HHsearch alignment for GI: 254780882 and conserved domain: PHA00730

>PHA00730 int integrase.
Probab=98.62  E-value=1e-06  Score=61.26  Aligned_cols=198  Identities=18%  Similarity=0.246  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             99999999851214788789689899999999999986121013321123444222233321012322222222222222
Q gi|254780882|r   43 TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS  122 (328)
Q Consensus        43 l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~ls~lr~f~~~~~~~~~i~~np~~~i~~~k~~  122 (328)
T Consensus        98 ~~effe~~l~~k----------~ise~T~K~Yv~~l~kp-~~~s--n~~~kA~r~f~~~~~~r~~~~-----~lK~kK~~  159 (322)
T PHA00730         98 NSEFFELTLRQR----------KISEKTIKDYINCIKQP-RKES--NNCIKAYRLFYRFLLNRDPPK-----ELKVKKTK  159 (322)
T ss_pred             HHHHHHHHHHHC----------CCCHHHHHHHHHHHHHH-HHHH--HHHHHHHHHHHHHHHCCCCHH-----HHHHCCCC
T ss_conf             899999998752----------67688999999998756-5540--214999999999972246377-----65220368


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCEEECCCCCCC
Q ss_conf             12111111101567877653101356775775320122210011233222221122-----2223323220332378531
Q gi|254780882|r  123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP-----QNIMDDQSTLRIQGKGDKI  197 (328)
Q Consensus       123 ~~~p~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~L~~-----~did~~~~~i~v~gKg~K~  197 (328)
T Consensus       160 pDl-~VPT~eeVk~tL~~~key~~v---------y~vYrllLESG~RlsEaLkvLn~y~p~~dv~e~~~~~y--------  221 (322)
T PHA00730        160 PDL-RIPTLEEIKRTLQLVKEYENL---------YLLYRLLLESGSRLSEALKVLNNYNPQNDIREDGFSIY--------  221 (322)
T ss_pred             CCC-CCCCHHHHHHHHHHHCCCCCH---------HHHHHHHHHHCHHHHHHHHHHHCCCHHHHCCCCCEEEE--------
T ss_conf             862-478889999999875047641---------46899998713028999999741480543035876999--------


Q ss_pred             CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             000112210023432211100123446655432111--122111000123567899976869998805417999999998
Q gi|254780882|r  198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI--RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS  275 (328)
Q Consensus       198 R~Vpi~~~~~~~l~~yl~~~~~~~~~~~~~~lF~~~--~g~~ls~~~i~~~~~~~~~~~gi~~~~spH~lRHtfAt~ll~  275 (328)
T Consensus       222 ---~L---------~w~R------g~K~~fy~fhit~Lk~~~It~~~i~~~~----~~~~---~v~~KYiRKfvatKm~e  276 (322)
T PHA00730        222 ---IL---------NWTR------GQKKSFYLFHITPLKQIKITKAYIDKYV----RRLN---LVPPKYIRKFVATKMLE  276 (322)
T ss_pred             ---EE---------HHHC------CCCCEEEEEEECCCEEEEECHHHHHHHH----HCCC---CCCHHHHHHHHHHHHHH
T ss_conf             ---83---------2221------6775699999425424566188886665----4046---68789999999999999


Q ss_pred             CCCCHHHHHHHHCCCCHHH-HHHHHHH
Q ss_conf             4899889999837888789-7999961
Q gi|254780882|r  276 NGGDLRSIQSILGHFRLST-TQIYTNV  301 (328)
Q Consensus       276 ~G~~~~~v~~~lGH~s~~t-T~~Y~h~  301 (328)
T Consensus       277 lgip~dvvdFiqGR~p~~ilt~HY~dL  303 (322)
T PHA00730        277 LGIPSEVVDFIQGRTPSRILTKHYLDL  303 (322)
T ss_pred             HCCCHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             689688999964788550468999999