HHsearch alignment for GI: 254780882 and conserved domain: PHA00730
>PHA00730 int integrase.
Probab=98.62 E-value=1e-06 Score=61.26 Aligned_cols=198 Identities=18% Similarity=0.246 Sum_probs=111.0
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99999999851214788789689899999999999986121013321123444222233321012322222222222222
Q gi|254780882|r 43 TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122 (328)
Q Consensus 43 l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~ls~lr~f~~~~~~~~~i~~np~~~i~~~k~~ 122 (328)
T Consensus 98 ~~effe~~l~~k----------~ise~T~K~Yv~~l~kp-~~~s--n~~~kA~r~f~~~~~~r~~~~-----~lK~kK~~ 159 (322)
T PHA00730 98 NSEFFELTLRQR----------KISEKTIKDYINCIKQP-RKES--NNCIKAYRLFYRFLLNRDPPK-----ELKVKKTK 159 (322)
T ss_pred HHHHHHHHHHHC----------CCCHHHHHHHHHHHHHH-HHHH--HHHHHHHHHHHHHHHCCCCHH-----HHHHCCCC
T ss_conf 899999998752----------67688999999998756-5540--214999999999972246377-----65220368
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCEEECCCCCCC
Q ss_conf 12111111101567877653101356775775320122210011233222221122-----2223323220332378531
Q gi|254780882|r 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP-----QNIMDDQSTLRIQGKGDKI 197 (328)
Q Consensus 123 ~~~p~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~L~~-----~did~~~~~i~v~gKg~K~ 197 (328)
T Consensus 160 pDl-~VPT~eeVk~tL~~~key~~v---------y~vYrllLESG~RlsEaLkvLn~y~p~~dv~e~~~~~y-------- 221 (322)
T PHA00730 160 PDL-RIPTLEEIKRTLQLVKEYENL---------YLLYRLLLESGSRLSEALKVLNNYNPQNDIREDGFSIY-------- 221 (322)
T ss_pred CCC-CCCCHHHHHHHHHHHCCCCCH---------HHHHHHHHHHCHHHHHHHHHHHCCCHHHHCCCCCEEEE--------
T ss_conf 862-478889999999875047641---------46899998713028999999741480543035876999--------
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 000112210023432211100123446655432111--122111000123567899976869998805417999999998
Q gi|254780882|r 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI--RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275 (328)
Q Consensus 198 R~Vpi~~~~~~~l~~yl~~~~~~~~~~~~~~lF~~~--~g~~ls~~~i~~~~~~~~~~~gi~~~~spH~lRHtfAt~ll~ 275 (328)
T Consensus 222 ---~L---------~w~R------g~K~~fy~fhit~Lk~~~It~~~i~~~~----~~~~---~v~~KYiRKfvatKm~e 276 (322)
T PHA00730 222 ---IL---------NWTR------GQKKSFYLFHITPLKQIKITKAYIDKYV----RRLN---LVPPKYIRKFVATKMLE 276 (322)
T ss_pred ---EE---------HHHC------CCCCEEEEEEECCCEEEEECHHHHHHHH----HCCC---CCCHHHHHHHHHHHHHH
T ss_conf ---83---------2221------6775699999425424566188886665----4046---68789999999999999
Q ss_pred CCCCHHHHHHHHCCCCHHH-HHHHHHH
Q ss_conf 4899889999837888789-7999961
Q gi|254780882|r 276 NGGDLRSIQSILGHFRLST-TQIYTNV 301 (328)
Q Consensus 276 ~G~~~~~v~~~lGH~s~~t-T~~Y~h~ 301 (328)
T Consensus 277 lgip~dvvdFiqGR~p~~ilt~HY~dL 303 (322)
T PHA00730 277 LGIPSEVVDFIQGRTPSRILTKHYLDL 303 (322)
T ss_pred HCCCHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 689688999964788550468999999