HHsearch alignment for GI: 254780882 and conserved domain: PRK00236
>PRK00236 xerC site-specific tyrosine recombinase XerC; Reviewed.
Probab=100.00 E-value=0 Score=485.95 Aligned_cols=294 Identities=40% Similarity=0.620 Sum_probs=271.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 49899999999999999862548899999999999999999851214788789689899999999999986121013321
Q gi|254780882|r 10 VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 (328)
Q Consensus 10 ~~~~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~ 89 (328)
T Consensus 2 ~~~~~~~~i~~fl~~l~~~r~lS~~Ti~~Y~~~l~~f~~~~~~~-----~~~~l~~i~~~~i~~~~~~l~~~g~s~~Ti~ 76 (295)
T PRK00236 2 ADADLPAALEAFLEYLRVERGLSPHTLRAYRRDLRAFLAFLEEV-----GLADLQQLDLADLRAFLARLRRQGLSARSLA 76 (295)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC-----CCCCHHHCCHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 80778999999999999885907999999999999999999875-----9999476999999999999987699999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCC
Q ss_conf 12344422223332101232222222222222212111111101567877653101356775775320122210011233
Q gi|254780882|r 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169 (328)
Q Consensus 90 ~~ls~lr~f~~~~~~~~~i~~np~~~i~~~k~~~~~p~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR 169 (328)
T Consensus 77 ~~l~~lr~~~~~a~~~~~i~~nP~~~i~~~k~~~~~~~~lt~~e~~~ll~~~~~------~~~~~Rd~~i~~ll~~tGlR 150 (295)
T PRK00236 77 RRLSALRSFYRWLVRRGLLKANPAAGLRAPKAPKRLPKPLDVDQAKRLLDADAD------DPLALRDRAILELLYGSGLR 150 (295)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCC------CCHHHHHHHHHHHHHHHCCC
T ss_conf 999999999998876286145778751277766568850018999999971325------80658999999999981978
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 22222112222233232203323785310001122100234322111001234466554321111221110001235678
Q gi|254780882|r 170 ISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 (328)
Q Consensus 170 ~~El~~L~~~did~~~~~i~v~gKg~K~R~Vpi~~~~~~~l~~yl~~~~~~~~~~~~~~lF~~~~g~~ls~~~i~~~~~~ 249 (328)
T Consensus 151 ~~E~~~L~~~did~~~~~i~i~~Kg~K~R~Vpl~~~~~~~L~~yl~~~~~---~~~~~~lF~~~~g~~l~~~~i~~~~~~ 227 (295)
T PRK00236 151 LSELVGLDIDDLDLASGTVRVLGKGNKERTVPVGSAALEALEAYLARPLA---EEDDDALFLGARGGRLSPRVVQRRVKK 227 (295)
T ss_pred HHHHCCCCHHHCCCCCCEEEEECCCCEEEEEECCHHHHHHHHHHHHHCCC---CCCCCEEEECCCCCCCCHHHHHHHHHH
T ss_conf 33120563977277789898817898168986599999999999996776---789983775689995878899999999
Q ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHCCCH
Q ss_conf 999768699988054179999999984899889999837888789799996198999999999999817300
Q gi|254780882|r 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321 (328)
Q Consensus 250 ~~~~~gi~~~~spH~lRHtfAt~ll~~G~~~~~v~~~lGH~s~~tT~~Y~h~~~~~~~~~l~~~~~~~~~~~ 321 (328)
T Consensus 228 ~~~~~gi~~~~~~H~lRHt~At~l~~~G~~l~~vq~~LGHssi~tT~~Y~h~~~~~----l~~~~~~~~p~~ 295 (295)
T PRK00236 228 LRKKAGLPEHITPHKLRHSFATHLLESGGDLRAVQELLGHASLSTTQIYTHVDFQH----LAEVYDAAHPRA 295 (295)
T ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHH----HHHHHHHHCCCC
T ss_conf 99985999999899788999999998799999999881899889999988689999----999999878399