HHsearch alignment for GI: 254780882 and conserved domain: PRK01287
>PRK01287 xerC site-specific tyrosine recombinase XerC; Reviewed.
Probab=100.00 E-value=0 Score=501.25 Aligned_cols=299 Identities=25% Similarity=0.361 Sum_probs=269.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHH------HHHHHH
Q ss_conf 99999999999999862548899999999999999999851214788789689899999999999986------121013
Q gi|254780882|r 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT------QKIGDR 86 (328)
Q Consensus 13 ~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~------~~~s~~ 86 (328)
T Consensus 22 ~~~~ll~~Fl~yL~-er~~S~~Ti~aY~~dL~~F~~fl~~~-----g~~~~~~vt~~~l~~y~~~L~~~r~~~g~~ls~~ 95 (361)
T PRK01287 22 SLYALLLRFVEWLQ-ERNWSERTLKVQTHHTYHFILWCEER-----GLYYAADVTRPVLERYQRYLYQYRKTNGEPLSQG 95 (361)
T ss_pred HHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHC-----CCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 79999999999999-83998999999999999999999984-----8999375899999999999998654068877999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCC
Q ss_conf 32112344422223332101232222222222222212111-11110156787765310135677577532012221001
Q gi|254780882|r 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165 (328)
Q Consensus 87 T~~~~ls~lr~f~~~~~~~~~i~~np~~~i~~~k~~~~~p~-~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~ 165 (328)
T Consensus 96 T~~r~LsalrsFf~~l~~~~~i~~nP~~~i~~PK~~k~lP~~~Ls~~Ev~~LL~~~-----~~~~~~g~RDrAil~LLy~ 170 (361)
T PRK01287 96 TQRTQLTPLRVWFKWLTKQNLILYNPAADIELPKLEKRLPRYILSIDETEAILAAP-----DPTTLQGLRDRALLELLWS 170 (361)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCC-----CCCCCHHHHHHHHHHHHHH
T ss_conf 99999999999999999879935375876327776555777679999999998474-----5588065999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEE-CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 1233222221122222332322033-2378531000112210023432211100123-4466554321111221110001
Q gi|254780882|r 166 CGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVF 243 (328)
Q Consensus 166 TGlR~~El~~L~~~did~~~~~i~v-~gKg~K~R~Vpi~~~~~~~l~~yl~~~~~~~-~~~~~~~lF~~~~g~~ls~~~i 243 (328)
T Consensus 171 tGLRvsEl~~L~~~DId~~~~~i~v~~GKG~KeR~VPl~~~~~~~L~~Yl~~~r~~~~~~~~~~~lFvs~~G~~ls~~~v 250 (361)
T PRK01287 171 TGIRRSELARLDLYDVDGSRKTVTVRQGKGNKDRVVPLGERALVWLQRYLQQVRPQLIVNPDSGALFVAMDGDGLQRNGI 250 (361)
T ss_pred HCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCHHHH
T ss_conf 37779888716664667888838873488874002027699999999999986176412788775212889995878999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHC
Q ss_conf 23567899976869998805417999999998489988999983788878979999619899999999999981730001
Q gi|254780882|r 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323 (328)
Q Consensus 244 ~~~~~~~~~~~gi~~~~spH~lRHtfAt~ll~~G~~~~~v~~~lGH~s~~tT~~Y~h~~~~~~~~~l~~~~~~~~~~~~~ 323 (328)
T Consensus 251 ~~~vk~~~~~agi~k~~~pH~LRHTfAT~lL~~GadL~~VQelLGHasi~TTqiYtHv~~~~----l~~v~~~~HP~~~~ 326 (361)
T PRK01287 251 TNLVGRYIRAAGIEKKGACHLFRHAMATQMLENGADLRWIQAMLGHASLETTQIYTQVSIRH----LQAVHASTHPAEQM 326 (361)
T ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHH----HHHHHHHHCCCCCC
T ss_conf 99999999980899999821059999999998699999999986899778999998479999----99999981998889
Q ss_pred CCC
Q ss_conf 223
Q gi|254780882|r 324 KDK 326 (328)
Q Consensus 324 ~~~ 326 (328)
T Consensus 327 ~~~ 329 (361)
T PRK01287 327 ADE 329 (361)
T ss_pred CCC
T ss_conf 863