HHsearch alignment for GI: 254780882 and conserved domain: PRK02436

>PRK02436 xerD site-specific tyrosine recombinase XerD-like protein; Reviewed.
Probab=100.00  E-value=0  Score=391.64  Aligned_cols=247  Identities=21%  Similarity=0.263  Sum_probs=208.8

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999986254889999999999999999985121478878968989999999999998612101332112344422
Q gi|254780882|r   18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS   97 (328)
Q Consensus        18 ~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~ls~lr~   97 (328)
T Consensus         1 l~~fl~~l~~ek~lS~nTi~aY~~DL~~F~~fl~~------------~i~~~~i~~y~~~L~--~~~~st~~Rklsslr~   66 (247)
T PRK02436          1 MKNYIEPFLASKALSVNSQKSYRYDLQQFCQLVGE------------RVNQTSLKLYQNSLA--NLKLSAQKRKLSAVNQ   66 (247)
T ss_pred             CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH------------HCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHH
T ss_conf             98899999998691499999999999999999873------------589999999999987--1679999999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             22333210123222222222222221211111110156787765310135677577532012221001123322222112
Q gi|254780882|r   98 FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT  177 (328)
Q Consensus        98 f~~~~~~~~~i~~np~~~i~~~k~~~~~p~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~L~  177 (328)
T Consensus        67 F~~fL~~~~~i~~~~~-~~~~~k~~~~~~~~~~~~~~~~~~~~~----------~~~~~r~i~~ll~~tGlRvSEl~~L~  135 (247)
T PRK02436         67 FLYFLYQKKYLDSFFK-LKETAKVMRSEKQQPEILDLSSFYQET----------PFPEGQLIALLILELGLTPSEIAGLK  135 (247)
T ss_pred             HHHHHHHCCCCCCCCC-HHCCCCCCCCCCCCCHHHHHHHHHCCC----------CCHHHHHHHHHHHHHCCHHHHHHCCC
T ss_conf             9999997687667520-420588988765413186799885646----------78568999999999694799997891


Q ss_pred             CCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf             22223323220332378531000112210023432211100123446655432111122111000123567899976869
Q gi|254780882|r  178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP  257 (328)
Q Consensus       178 ~~did~~~~~i~v~gKg~K~R~Vpi~~~~~~~l~~yl~~~~~~~~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~gi~  257 (328)
T Consensus       136 ~~Did~~~~~i~v-~kg~k~R~Vpl~~~~~~~l~~y~~~--------~~~~l~-~~~g~~lsr~~~~~~lk~~~~~~g~~  205 (247)
T PRK02436        136 VADIDLDFQVLTI-EKAGGKRVLPLPEALLPFLEQILNG--------KEVYLF-EHKGKPYSRQWFFNQLKSFVNSIGYP  205 (247)
T ss_pred             HHHHCCCCCEEEE-ECCCEEEEEECCHHHHHHHHHHHHC--------CCCEEE-CCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             9991988787999-0799078754679999999998715--------865011-68999667999999999999974999


Q ss_pred             CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             9988054179999999984899889999837888789799996
Q gi|254780882|r  258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN  300 (328)
Q Consensus       258 ~~~spH~lRHtfAt~ll~~G~~~~~v~~~lGH~s~~tT~~Y~h  300 (328)
T Consensus       206 -~vtPH~LRHsFAthlL~~Gadlr~vQeLLGH~sisTTqiY~k  247 (247)
T PRK02436        206 -GLTAQKLREQFILKQKEAGKSIYELARLLGLKTPVTLEKYYK  247 (247)
T ss_pred             -CCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHCC
T ss_conf             -998710099999999987999999998808998788553069