HHsearch alignment for GI: 254780882 and conserved domain: PRK02436
>PRK02436 xerD site-specific tyrosine recombinase XerD-like protein; Reviewed.
Probab=100.00 E-value=0 Score=391.64 Aligned_cols=247 Identities=21% Similarity=0.263 Sum_probs=208.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999986254889999999999999999985121478878968989999999999998612101332112344422
Q gi|254780882|r 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97 (328)
Q Consensus 18 ~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~ls~lr~ 97 (328)
T Consensus 1 l~~fl~~l~~ek~lS~nTi~aY~~DL~~F~~fl~~------------~i~~~~i~~y~~~L~--~~~~st~~Rklsslr~ 66 (247)
T PRK02436 1 MKNYIEPFLASKALSVNSQKSYRYDLQQFCQLVGE------------RVNQTSLKLYQNSLA--NLKLSAQKRKLSAVNQ 66 (247)
T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH------------HCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHH
T ss_conf 98899999998691499999999999999999873------------589999999999987--1679999999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22333210123222222222222221211111110156787765310135677577532012221001123322222112
Q gi|254780882|r 98 FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 (328)
Q Consensus 98 f~~~~~~~~~i~~np~~~i~~~k~~~~~p~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~L~ 177 (328)
T Consensus 67 F~~fL~~~~~i~~~~~-~~~~~k~~~~~~~~~~~~~~~~~~~~~----------~~~~~r~i~~ll~~tGlRvSEl~~L~ 135 (247)
T PRK02436 67 FLYFLYQKKYLDSFFK-LKETAKVMRSEKQQPEILDLSSFYQET----------PFPEGQLIALLILELGLTPSEIAGLK 135 (247)
T ss_pred HHHHHHHCCCCCCCCC-HHCCCCCCCCCCCCCHHHHHHHHHCCC----------CCHHHHHHHHHHHHHCCHHHHHHCCC
T ss_conf 9999997687667520-420588988765413186799885646----------78568999999999694799997891
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 22223323220332378531000112210023432211100123446655432111122111000123567899976869
Q gi|254780882|r 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 (328)
Q Consensus 178 ~~did~~~~~i~v~gKg~K~R~Vpi~~~~~~~l~~yl~~~~~~~~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~gi~ 257 (328)
T Consensus 136 ~~Did~~~~~i~v-~kg~k~R~Vpl~~~~~~~l~~y~~~--------~~~~l~-~~~g~~lsr~~~~~~lk~~~~~~g~~ 205 (247)
T PRK02436 136 VADIDLDFQVLTI-EKAGGKRVLPLPEALLPFLEQILNG--------KEVYLF-EHKGKPYSRQWFFNQLKSFVNSIGYP 205 (247)
T ss_pred HHHHCCCCCEEEE-ECCCEEEEEECCHHHHHHHHHHHHC--------CCCEEE-CCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9991988787999-0799078754679999999998715--------865011-68999667999999999999974999
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 9988054179999999984899889999837888789799996
Q gi|254780882|r 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 (328)
Q Consensus 258 ~~~spH~lRHtfAt~ll~~G~~~~~v~~~lGH~s~~tT~~Y~h 300 (328)
T Consensus 206 -~vtPH~LRHsFAthlL~~Gadlr~vQeLLGH~sisTTqiY~k 247 (247)
T PRK02436 206 -GLTAQKLREQFILKQKEAGKSIYELARLLGLKTPVTLEKYYK 247 (247)
T ss_pred -CCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHCC
T ss_conf -998710099999999987999999998808998788553069