HHsearch alignment for GI: 254780882 and conserved domain: PRK05084
>PRK05084 xerS site-specific tyrosine recombinase XerS; Reviewed.
Probab=100.00 E-value=0 Score=438.39 Aligned_cols=300 Identities=22% Similarity=0.315 Sum_probs=251.5
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC------CCCCCCCHHHCCHHHHHHHHHHHHH----
Q ss_conf 989999999999999986254889999999999999999985121------4788789689899999999999986----
Q gi|254780882|r 11 SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE------EKITIQTIRQLSYTEIRAFISKRRT---- 80 (328)
Q Consensus 11 ~~~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~------~~~~~~~~~~i~~~~i~~~l~~l~~---- 80 (328)
T Consensus 14 ~~~~P~~i~ey~~~~~-~~~~Sp~Ti~~Y~~DL~~F~~fL~~~~~~~~~~~~~i~~~~l~~l~~~di~~y~~~L~~~~~~ 92 (360)
T PRK05084 14 KAEMPWYVLEYYQSKL-ATPYSPTTLYEYLTEYRRFFNWLIDEGLTVATKIKDIPLSTLENLTKKDVELFILYLRERPSL 92 (360)
T ss_pred HHHCHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHCCCC
T ss_conf 8867099999999886-059898999999999999999998649875556332778999756699999999999852223
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCCCCCCCCCCCCCCCC--------CCCCCCCCHHHHHHH
Q ss_conf ------12101332112344422223332101-------232222222222222212--------111111101567877
Q gi|254780882|r 81 ------QKIGDRSLKRSLSGIKSFLKYLKKRK-------ITTESNILNMRNLKKSNS--------LPRALNEKQALTLVD 139 (328)
Q Consensus 81 ------~~~s~~T~~~~ls~lr~f~~~~~~~~-------~i~~np~~~i~~~k~~~~--------~p~~lt~~e~~~ll~ 139 (328)
T Consensus 93 ~~~~~~~~~s~~tinRklsaLrsFfkyL~~~~~~~~~~~y~~~n~~~~i~~~k~~~~~~~r~~~~~~~~l~~~e~~~ll~ 172 (360)
T PRK05084 93 NGHLTGEGVSQTTINRTLSALKSLFKYLTEETENEDGEPYFYRNVMKKISLKKKKETLAARAENLKQKLFLGDETVEFLD 172 (360)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHH
T ss_conf 43212257678899999999999999999852022322133115265257776532122310000120055678999997
Q ss_pred HHHHCCCCCCC--------HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHH
Q ss_conf 65310135677--------5775320122210011233222221122222332322033237853100011221002343
Q gi|254780882|r 140 NVLLHTSHETK--------WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211 (328)
Q Consensus 140 ~~~~~~~~~~~--------~~~~Rd~~i~~ll~~TGlR~~El~~L~~~did~~~~~i~v~gKg~K~R~Vpi~~~~~~~l~ 211 (328)
T Consensus 173 ~i~~~~~~~l~~~~~~~~~~~~~RD~aIi~ll~~tGlRvsEl~~L~~~DId~~~~~i~V~~Kg~K~r~vpi~~~~~~~l~ 252 (360)
T PRK05084 173 FIDNEYEQKLSNRALSSFKKNKERDLAIIALLLGSGIRVSELVNLDLKDLNLKQMTIDVTRKGGKRDSVPIAPFALPYLE 252 (360)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHCCCHHHCCCCCCEEEEEECCCCEEEEECCHHHHHHHH
T ss_conf 65244341202555443012367999999999985879999976979985878997999847984468877899999999
Q ss_pred HHHHHHCCCCC-CCCCCCCCCCCCC---CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 22111001234-4665543211112---2111000123567899976869998805417999999998489988999983
Q gi|254780882|r 212 EYYDLCPFDLN-LNIQLPLFRGIRG---KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 (328)
Q Consensus 212 ~yl~~~~~~~~-~~~~~~lF~~~~g---~~ls~~~i~~~~~~~~~~~gi~~~~spH~lRHtfAt~ll~~G~~~~~v~~~l 287 (328)
T Consensus 253 ~yl~~r~~~~~~~~~~~~lF~~~~~~~~~rls~~~i~~~v~k~~~~~~~--~itpH~LRHtfAT~Ll~~G~dl~~vq~lL 330 (360)
T PRK05084 253 EYLKIRAQRYKAEKNDTALFLTKYRGKPNRISASAIEKMVAKYSEAFGV--RVTPHKLRHTLATRLYDATKDQVLVADQL 330 (360)
T ss_pred HHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 9999708743577888815764689988822499999999999986799--97841329999999998799999999985
Q ss_pred CCCCHHHHHHHHHHCHHHHHHHHHHH
Q ss_conf 78887897999961989999999999
Q gi|254780882|r 288 GHFRLSTTQIYTNVNSKNGGDWMMEI 313 (328)
Q Consensus 288 GH~s~~tT~~Y~h~~~~~~~~~l~~~ 313 (328)
T Consensus 331 GH~si~TT~iYthv~~~~~r~a~~~l 356 (360)
T PRK05084 331 GHTSTQVTDLYTHIVNDEQKDALDKL 356 (360)
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 89987999998868999999999863