HHsearch alignment for GI: 254780882 and conserved domain: PRK09692
>PRK09692 integrase; Provisional.
Probab=99.97 E-value=3.3e-30 Score=208.01 Aligned_cols=280 Identities=13% Similarity=0.105 Sum_probs=196.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999986254889999999999999999985121478878968989999999999998612101332112
Q gi|254780882|r 12 FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 (328)
Q Consensus 12 ~~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~ 91 (328)
T Consensus 105 ~tf~~va~~w~~~~~~--~~~~~~~~~~~r~le---~~v----~p~iG~~~i~~I~~~di~~~l~~i~~rg-~~~~a~r~ 174 (413)
T PRK09692 105 NTFQLVAERWWNVKKA--SVTEDYAEDIWRSLE---RDV----FPAIGDVSVTDIKAHTLVQAVQPVQARG-ALETVRRL 174 (413)
T ss_pred HHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHH---HHH----HHHHCCCCCCCCCHHHHHHHHHHHHHCC-HHHHHHHH
T ss_conf 1999999999998754--325779999999999---888----7985888410078999999987999739-89999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCC
Q ss_conf 3444222233321012322222222222--22212111111101567877653101356775775320122210011233
Q gi|254780882|r 92 LSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169 (328)
Q Consensus 92 ls~lr~f~~~~~~~~~i~~np~~~i~~~--k~~~~~p~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR 169 (328)
T Consensus 175 ~~~l~~i~~~A~~~gli~~nP~~~~~~~~~~p~~~~~~~l~~~el~~l~~~l~~~~~~----~~~~--~~l~l~lLt~~R 248 (413)
T PRK09692 175 CQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMQTMRTASIS----LSTR--CLFMWQLLTITR 248 (413)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC----HHHH--HHHHHHHHHCCC
T ss_conf 9999999999996586445854343452568754577768989999999999857997----3578--999999997232
Q ss_pred CCCCCCCCCCCCCCCCCCEEE---CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC--CCCCCCCCCHH
Q ss_conf 222221122222332322033---2378531000112210023432211100123446655432111--12211100012
Q gi|254780882|r 170 ISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI--RGKPLNPGVFQ 244 (328)
Q Consensus 170 ~~El~~L~~~did~~~~~i~v---~gKg~K~R~Vpi~~~~~~~l~~yl~~~~~~~~~~~~~~lF~~~--~g~~ls~~~i~ 244 (328)
T Consensus 249 ~~Ev~~arW~eiD~~~~~W~IPaer~K~~~~h~VPLs~qA~~iL~~l~~~------~~~~~~vFps~~~~~~~~s~~t~~ 322 (413)
T PRK09692 249 PAEAAEARWEEVDIEAQEWKIPAARMKMNRDHTVPLSDEAIAILEMMKPL------SGNREFIFPSRIKPNQPMNSQTVN 322 (413)
T ss_pred HHHHHCCCHHHEECCCCEEEECHHHCCCCCCCEECCCHHHHHHHHHHHHH------CCCCEEECCCCCCCCCCCCHHHHH
T ss_conf 68773677999557888799756884898871527869999999999986------199769803699999978889999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHH-HHHHHHHHCHHHHHHHHHHHHHHH
Q ss_conf 3567899976869998805417999999998489988999983788878-979999619899999999999981
Q gi|254780882|r 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDWMMEIYDQT 317 (328)
Q Consensus 245 ~~~~~~~~~~gi~~~~spH~lRHtfAt~ll~~G~~~~~v~~~lGH~s~~-tT~~Y~h~~~~~~~~~l~~~~~~~ 317 (328)
T Consensus 323 ~al----~~~~~~~~~t~Hd~RrT~~T~l~e~g~~~~viE~~L~H~~~~~v~~~Ynr~~yl~eRr~~mq~Wady 392 (413)
T PRK09692 323 ASL----KRAGFGGVLVSHGLRSIASTALNEQGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADF 392 (413)
T ss_pred HHH----HHCCCCCCEECCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_conf 999----9669999765848457799989976999999999868999982899956775999999999999999