HHsearch alignment for GI: 254780882 and conserved domain: PRK09692

>PRK09692 integrase; Provisional.
Probab=99.97  E-value=3.3e-30  Score=208.01  Aligned_cols=280  Identities=13%  Similarity=0.105  Sum_probs=196.7

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999999999999986254889999999999999999985121478878968989999999999998612101332112
Q gi|254780882|r   12 FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS   91 (328)
Q Consensus        12 ~~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~   91 (328)
T Consensus       105 ~tf~~va~~w~~~~~~--~~~~~~~~~~~r~le---~~v----~p~iG~~~i~~I~~~di~~~l~~i~~rg-~~~~a~r~  174 (413)
T PRK09692        105 NTFQLVAERWWNVKKA--SVTEDYAEDIWRSLE---RDV----FPAIGDVSVTDIKAHTLVQAVQPVQARG-ALETVRRL  174 (413)
T ss_pred             HHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHH---HHH----HHHHCCCCCCCCCHHHHHHHHHHHHHCC-HHHHHHHH
T ss_conf             1999999999998754--325779999999999---888----7985888410078999999987999739-89999999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCC
Q ss_conf             3444222233321012322222222222--22212111111101567877653101356775775320122210011233
Q gi|254780882|r   92 LSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR  169 (328)
Q Consensus        92 ls~lr~f~~~~~~~~~i~~np~~~i~~~--k~~~~~p~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR  169 (328)
T Consensus       175 ~~~l~~i~~~A~~~gli~~nP~~~~~~~~~~p~~~~~~~l~~~el~~l~~~l~~~~~~----~~~~--~~l~l~lLt~~R  248 (413)
T PRK09692        175 CQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMQTMRTASIS----LSTR--CLFMWQLLTITR  248 (413)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC----HHHH--HHHHHHHHHCCC
T ss_conf             9999999999996586445854343452568754577768989999999999857997----3578--999999997232


Q ss_pred             CCCCCCCCCCCCCCCCCCEEE---CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC--CCCCCCCCCHH
Q ss_conf             222221122222332322033---2378531000112210023432211100123446655432111--12211100012
Q gi|254780882|r  170 ISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI--RGKPLNPGVFQ  244 (328)
Q Consensus       170 ~~El~~L~~~did~~~~~i~v---~gKg~K~R~Vpi~~~~~~~l~~yl~~~~~~~~~~~~~~lF~~~--~g~~ls~~~i~  244 (328)
T Consensus       249 ~~Ev~~arW~eiD~~~~~W~IPaer~K~~~~h~VPLs~qA~~iL~~l~~~------~~~~~~vFps~~~~~~~~s~~t~~  322 (413)
T PRK09692        249 PAEAAEARWEEVDIEAQEWKIPAARMKMNRDHTVPLSDEAIAILEMMKPL------SGNREFIFPSRIKPNQPMNSQTVN  322 (413)
T ss_pred             HHHHHCCCHHHEECCCCEEEECHHHCCCCCCCEECCCHHHHHHHHHHHHH------CCCCEEECCCCCCCCCCCCHHHHH
T ss_conf             68773677999557888799756884898871527869999999999986------199769803699999978889999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHH-HHHHHHHHCHHHHHHHHHHHHHHH
Q ss_conf             3567899976869998805417999999998489988999983788878-979999619899999999999981
Q gi|254780882|r  245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDWMMEIYDQT  317 (328)
Q Consensus       245 ~~~~~~~~~~gi~~~~spH~lRHtfAt~ll~~G~~~~~v~~~lGH~s~~-tT~~Y~h~~~~~~~~~l~~~~~~~  317 (328)
T Consensus       323 ~al----~~~~~~~~~t~Hd~RrT~~T~l~e~g~~~~viE~~L~H~~~~~v~~~Ynr~~yl~eRr~~mq~Wady  392 (413)
T PRK09692        323 ASL----KRAGFGGVLVSHGLRSIASTALNEQGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADF  392 (413)
T ss_pred             HHH----HHCCCCCCEECCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_conf             999----9669999765848457799989976999999999868999982899956775999999999999999