HHsearch alignment for GI: 254780882 and conserved domain: PRK09871
>PRK09871 tyrosine recombinase; Provisional.
Probab=100.00 E-value=0 Score=324.95 Aligned_cols=189 Identities=25% Similarity=0.298 Sum_probs=169.6
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC-CCCCCCCCCCCCC
Q ss_conf 111110156787765310135677577532012221001123322222112222233232203323-7853100011221
Q gi|254780882|r 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPS 205 (328)
Q Consensus 127 ~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~L~~~did~~~~~i~v~g-Kg~K~R~Vpi~~~ 205 (328)
T Consensus 5 ryLt~~Ev~~Ll~a~~~------~~~~~Rd~aii~ll~~tGlR~sEl~~L~~~Did~~~~~i~i~~~k~g~~~~~pl~~~ 78 (198)
T PRK09871 5 RYLTGKEVQAMMQAVCY------GATGARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFD 78 (198)
T ss_pred CCCCHHHHHHHHHCCCC------CCCCHHHHHHHHHHHHHCCHHHHHHCCCHHHCCCCCCEEEEEECCCCEEEEEECCHH
T ss_conf 76999999999844143------985448999999999978689999788887758779969999789974898748699
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHH
Q ss_conf 00234322111001234466554321111221110001235678999768699988054179999999984899889999
Q gi|254780882|r 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285 (328)
Q Consensus 206 ~~~~l~~yl~~~~~~~~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~gi~~~~spH~lRHtfAt~ll~~G~~~~~v~~ 285 (328)
T Consensus 79 ~~~~l~~~~~~r~~~~~~~~~~~lF~s~~G~~ls~~~~~~~ik~~~~~aG~~~~~~pH~LRHTfAt~Ll~~G~dl~~Iq~ 158 (198)
T PRK09871 79 EREAVERWTQERANWKGADRTDAIFISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGYELAERGADTRLIQD 158 (198)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHH
T ss_conf 99999999998777512677884143588994799999999999999849998889985579999999986999999999
Q ss_pred HHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHCCC
Q ss_conf 8378887897999961989999999999998173000122
Q gi|254780882|r 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325 (328)
Q Consensus 286 ~lGH~s~~tT~~Y~h~~~~~~~~~l~~~~~~~~~~~~~~~ 325 (328)
T Consensus 159 lLGHssi~TT~~Yth~~~~----~l~~~~~~~~p~~~~~~ 194 (198)
T PRK09871 159 YLGHRNIRHTVRYTASNAA----RFAGLWERNNLINEKLK 194 (198)
T ss_pred HHCCCCHHHHHHHHCCCHH----HHHHHHHHHCCCCCCCC
T ss_conf 9389977899998858999----99999999496100100