HHsearch alignment for GI: 254780882 and conserved domain: PRK09871

>PRK09871 tyrosine recombinase; Provisional.
Probab=100.00  E-value=0  Score=324.95  Aligned_cols=189  Identities=25%  Similarity=0.298  Sum_probs=169.6

Q ss_pred             CCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC-CCCCCCCCCCCCC
Q ss_conf             111110156787765310135677577532012221001123322222112222233232203323-7853100011221
Q gi|254780882|r  127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPS  205 (328)
Q Consensus       127 ~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~L~~~did~~~~~i~v~g-Kg~K~R~Vpi~~~  205 (328)
T Consensus         5 ryLt~~Ev~~Ll~a~~~------~~~~~Rd~aii~ll~~tGlR~sEl~~L~~~Did~~~~~i~i~~~k~g~~~~~pl~~~   78 (198)
T PRK09871          5 RYLTGKEVQAMMQAVCY------GATGARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFD   78 (198)
T ss_pred             CCCCHHHHHHHHHCCCC------CCCCHHHHHHHHHHHHHCCHHHHHHCCCHHHCCCCCCEEEEEECCCCEEEEEECCHH
T ss_conf             76999999999844143------985448999999999978689999788887758779969999789974898748699


Q ss_pred             CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHH
Q ss_conf             00234322111001234466554321111221110001235678999768699988054179999999984899889999
Q gi|254780882|r  206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS  285 (328)
Q Consensus       206 ~~~~l~~yl~~~~~~~~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~gi~~~~spH~lRHtfAt~ll~~G~~~~~v~~  285 (328)
T Consensus        79 ~~~~l~~~~~~r~~~~~~~~~~~lF~s~~G~~ls~~~~~~~ik~~~~~aG~~~~~~pH~LRHTfAt~Ll~~G~dl~~Iq~  158 (198)
T PRK09871         79 EREAVERWTQERANWKGADRTDAIFISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGYELAERGADTRLIQD  158 (198)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHH
T ss_conf             99999999998777512677884143588994799999999999999849998889985579999999986999999999


Q ss_pred             HHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHCCC
Q ss_conf             8378887897999961989999999999998173000122
Q gi|254780882|r  286 ILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKD  325 (328)
Q Consensus       286 ~lGH~s~~tT~~Y~h~~~~~~~~~l~~~~~~~~~~~~~~~  325 (328)
T Consensus       159 lLGHssi~TT~~Yth~~~~----~l~~~~~~~~p~~~~~~  194 (198)
T PRK09871        159 YLGHRNIRHTVRYTASNAA----RFAGLWERNNLINEKLK  194 (198)
T ss_pred             HHCCCCHHHHHHHHCCCHH----HHHHHHHHHCCCCCCCC
T ss_conf             9389977899998858999----99999999496100100