HHsearch alignment for GI: 254780882 and conserved domain: TIGR02225
>TIGR02225 recomb_XerD tyrosine recombinase XerD; InterPro: IPR011932 Proteins in this entry are part of the wider so-called "phage" integrase fmaily which describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This entry represents the chromosomally-encoded polypeptide XerD, which is closely related to, and interacts with, another chromosomally-encoded polypeptide, XerC (IPR011931 from INTERPRO). These proteins are site-specific tyrosine recombinases, which act by catalyzing the cutting and rejoining of the recombining DNA molecules . They form a cyclic heterotetrameric complex composed of two molecules of XerC and two molecules of XerD. The XerC-XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. XerD is composed of two domains, an N-terminal alpha-helical domain, and a C-terminal domain composed mostly of alpha helices, with a three-stranded antiprallel beta sheet along one edge . The active site is found at the extreme C-terminal end of the polypeptide. Most of the C-terminal domain is structurally homologous to that of other "phage" integrases, but the active site regions of these enzymes are stucturally distinct.; GO: 0003677 DNA binding, 0006310 DNA recombination, 0007049 cell cycle, 0007059 chromosome segregation, 0015074 DNA integration, 0051301 cell division.
Probab=100.00 E-value=0 Score=598.55 Aligned_cols=293 Identities=32% Similarity=0.515 Sum_probs=272.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999862548899999999999999999851214788789689899999999999986121013321123444222
Q gi|254780882|r 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSF 98 (328)
Q Consensus 19 e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~ls~lr~f 98 (328)
T Consensus 1 ~~Fl~~L~~E~GLs~NT~~aYrrDL~~f~~~L~~~~----~g-~~~~~~~~~i~~fl~~l~~~g~~~~S~AR~lsalR~F 75 (305)
T TIGR02225 1 DDFLDYLWVERGLSQNTLEAYRRDLEKFLEYLEESE----RG-DLAEVDRGDIEDFLAELKEAGLSARSIARALSALRSF 75 (305)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CC-CHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 948899999863538889999999999999862224----78-7641687899999999986687700288999999999
Q ss_pred HHHHHHHCCCCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHHHH-HHCCCCC-CCHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 23332101232222222-22222221211111110156787765-3101356-775775320122210011233222221
Q gi|254780882|r 99 LKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVDNV-LLHTSHE-TKWIDARNSAILYLLYGCGLRISEALS 175 (328)
Q Consensus 99 ~~~~~~~~~i~~np~~~-i~~~k~~~~~p~~lt~~e~~~ll~~~-~~~~~~~-~~~~~~Rd~~i~~ll~~TGlR~~El~~ 175 (328)
T Consensus 76 y~fL~~e~~~~~dP~~~~~~~PK~~~~LP~vLt~~EV~~LL~~p~~~~~~~g~kr~-~lRDrAmLElLYATGlRVSELv~ 154 (305)
T TIGR02225 76 YRFLLREGLREDDPSALRIETPKVARKLPKVLTVEEVEALLAAPIDVDTPLGGKRP-ALRDRAMLELLYATGLRVSELVG 154 (305)
T ss_pred HHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCH-HHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 99998688745573366420342245788837989999998500246776767640-16547999999864883553305
Q ss_pred CCCCCCCCCCCC-EE-ECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-CCC--CCCC---CCCCCC-CCCCCCCCHHHH
Q ss_conf 122222332322-03-32378531000112210023432211100123-446--6554---321111-221110001235
Q gi|254780882|r 176 LTPQNIMDDQST-LR-IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLN--IQLP---LFRGIR-GKPLNPGVFQRY 246 (328)
Q Consensus 176 L~~~did~~~~~-i~-v~gKg~K~R~Vpi~~~~~~~l~~yl~~~~~~~-~~~--~~~~---lF~~~~-g~~ls~~~i~~~ 246 (328)
T Consensus 155 L~~~d~~l~~g~~~~~v~GKG~KERlVP~G~~A~~~l~~Yl~~~R~~~~~~~~~~~d~~~~LFln~~~G~~lsRQ~~W~~ 234 (305)
T TIGR02225 155 LRLEDVNLDEGVKVRKVRGKGSKERLVPLGEEAIEALERYLKEARPLLLKKKKKSSDAKSALFLNRREGGPLSRQGFWKI 234 (305)
T ss_pred CCHHHHHCCCCEEEEEEEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 61665200277379998616884120220289999999999874067641778887554311246888888788999999
Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHCCCH
Q ss_conf 678999768699988054179999999984899889999837888789799996198999999999999817300
Q gi|254780882|r 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321 (328)
Q Consensus 247 ~~~~~~~~gi~~~~spH~lRHtfAt~ll~~G~~~~~v~~~lGH~s~~tT~~Y~h~~~~~~~~~l~~~~~~~~~~~ 321 (328)
T Consensus 235 ~K~~A~~aGI~k~isPHtLRHSFATHLLenGADLR~VQeLLGHadisTTQIYTHV~----~~~L~~~~~~~HPRa 305 (305)
T TIGR02225 235 LKEYAKRAGIEKPISPHTLRHSFATHLLENGADLRVVQELLGHADISTTQIYTHVA----RERLKEVHKKHHPRA 305 (305)
T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHH----HHHHHHHHHHHCCCC
T ss_conf 99999981889899975104679999873688276887774322147889999987----999999999628899