HHsearch alignment for GI: 254780882 and conserved domain: cd01184
>cd01184 INT_SG2_C INT_SG2, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 2, C-terminal catalytic domain. The CD contains mainly predicted integrase/recombinases and phage-related integrases. Some have N-terminal domains, which show little sequence similarity to each other. Members of this subgroup are predominantly found in proteobacteria.
Probab=99.97 E-value=1.7e-32 Score=222.38 Aligned_cols=163 Identities=21% Similarity=0.301 Sum_probs=126.6
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCHHHHHH---HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE--C-------CCCCC
Q ss_conf 1110156787765310135677577532---0122210011233222221122222332322033--2-------37853
Q gi|254780882|r 129 LNEKQALTLVDNVLLHTSHETKWIDARN---SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI--Q-------GKGDK 196 (328)
Q Consensus 129 lt~~e~~~ll~~~~~~~~~~~~~~~~Rd---~~i~~ll~~TGlR~~El~~L~~~did~~~~~i~v--~-------gKg~K 196 (328)
T Consensus 1 f~~~e~~~ll~~~~~-----~~~~~~~~~~~y~~~ll~~~TGlR~~Ei~~L~~~Di~~~~g~~~i~i~~~~~~~~~Kt~~ 75 (181)
T cd01184 1 FTTEELKAIFASPAY-----TGWASQKDPHRYWLPLLGLYTGARVNEIAQLQVDDIREEDGVPCIDITNDDEDQSLKNAA 75 (181)
T ss_pred CCHHHHHHHHCCCCC-----CCCCCCCCCHHHHHHHHHHHHCCCHHHHHCCCHHHEEEECCEEEEEEECCCCCCCCCCCC
T ss_conf 998999999678000-----345467980599999999996907999971979897135998999996378776567877
Q ss_pred -CCCCCCCCCCHHH-HHHHHHHHCCCCCCCCCCCCCCCCC--CCCCCCCCHHHHHHHHHHHCCCC-CCCCCCCCHHHHHH
Q ss_conf -1000112210023-4322111001234466554321111--22111000123567899976869-99880541799999
Q gi|254780882|r 197 -IRIVPLLPSVRKA-ILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFAT 271 (328)
Q Consensus 197 -~R~Vpi~~~~~~~-l~~yl~~~~~~~~~~~~~~lF~~~~--g~~ls~~~i~~~~~~~~~~~gi~-~~~spH~lRHtfAt 271 (328)
T Consensus 76 s~R~vPl~~~l~~~~~~~~~~~~~----~~~~~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~H~lRHT~aT 151 (181)
T cd01184 76 SRRTIPVHPELIELGFLDYVEARR----AAGHKRLFPDLPAGKTGGYGSAVSKWFSRYLKKLGLKDKGKSFHSFRHTFIT 151 (181)
T ss_pred CEEEECCCHHHHHHHHHHHHHHHH----HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf 536416889999999999999987----1599612444447888861057999999999984999788978646899999
Q ss_pred HHHHCCCCHHHHHHHHCCCCHHHHH-HHHH
Q ss_conf 9998489988999983788878979-9996
Q gi|254780882|r 272 HLLSNGGDLRSIQSILGHFRLSTTQ-IYTN 300 (328)
Q Consensus 272 ~ll~~G~~~~~v~~~lGH~s~~tT~-~Y~h 300 (328)
T Consensus 152 ~l~~~gv~~~~v~~~lGHss~~tT~~~Ygk 181 (181)
T cd01184 152 ELRNAGVSRELIAAIMGHEEGTTTFGRYGK 181 (181)
T ss_pred HHHHCCCCHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 999869899999998289998864253081