HHsearch alignment for GI: 254780882 and conserved domain: cd01185
>cd01185 INT_Tn4399 Tn4399 and related integrases, DNA breaking-rejoining enzymes, integrase/recombinases, N- and C-terminal domains. This CD includes various bacterial integrases, including cLV25, a Bacteroides fragilis chromosomal transfer factor integrase similar to the Bacteroides mobilizable transposon, Tn4399, integrase.
Probab=100.00 E-value=0 Score=383.75 Aligned_cols=284 Identities=20% Similarity=0.256 Sum_probs=237.4
Q ss_pred HHCCHHHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHH-HHHHHH
Q ss_conf 314989999999999999-986254889999999999999999985121478878968989999999999998-612101
Q gi|254780882|r 8 EIVSFELLKERQNWLQNL-EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGD 85 (328)
Q Consensus 8 ~~~~~~l~~~~e~~L~~l-~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~-~~~~s~ 85 (328)
T Consensus 9 ~~~~~tf~~~~~~~~e~~~~~~k~~S~~Ti~~Y~~~l~~f~~Fl~~~~~~--~di~~~~i~~~~i~~f~~~L~~~k~~s~ 86 (299)
T cd01185 9 KEMQQTFLAYFDKHNDERERVGKDKAQSTWKRYRTHLKNLREFIECTYKE--IDIALLELTREFILEFKLFLRKEKKLSR 86 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC--CCCCHHHCCHHHHHHHHHHHHHCCCCCH
T ss_conf 78899999999999999998677567999999999999999999982887--7788788479999999999987579888
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCC
Q ss_conf 33211234442222333210123222222222222221211111110156787765310135677577532012221001
Q gi|254780882|r 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165 (328)
Q Consensus 86 ~T~~~~ls~lr~f~~~~~~~~~i~~np~~~i~~~k~~~~~p~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~ 165 (328)
T Consensus 87 ~Ti~~~l~~lr~~~~~a~~~~~i~~nP~~~i~~~k~~~~~~~~Lt~eEi~~ll~~~~----~~~~~~~~r~~~l~~~--~ 160 (299)
T cd01185 87 NTAVHYLSWLKKLLKIAYRDKGLRDNPFAKFKCKKEEETDREYLTPDELQKLAETPC----KDPRLELVRRAFLFSC--F 160 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHCCC----CCCCHHHHHHHHHHHH--H
T ss_conf 899999999999999999889921192965617888998999999999999982714----7874699999999998--8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC---EEE-CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1233222221122222332322---033-237853100011221002343221110012344665543211112211100
Q gi|254780882|r 166 CGLRISEALSLTPQNIMDDQST---LRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241 (328)
Q Consensus 166 TGlR~~El~~L~~~did~~~~~---i~v-~gKg~K~R~Vpi~~~~~~~l~~yl~~~~~~~~~~~~~~lF~~~~g~~ls~~ 241 (328)
T Consensus 161 TGlR~~El~~L~~~dI~~~~~~~~~i~~~~~Kt~~~~~ipl~~~~~~~l~~~~~--------~~~~~lF~~-----~~~~ 227 (299)
T cd01185 161 TGLRYSDIKKLTWEEIVEDSDGEKWIRKRRQKTKVEVYIPLLDEALQILGKYPD--------EKEGLVFPL-----LKNS 227 (299)
T ss_pred HCCCHHHHHHCCHHHHHHCCCCEEEEEECCCCCCEEEEEECHHHHHHHHHHHHC--------CCCCCCCCC-----CCHH
T ss_conf 098899998396998213369648998516744224320015999999998522--------675440688-----8756
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHH
Q ss_conf 01235678999768699988054179999999984899889999837888789799996198999999999
Q gi|254780882|r 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 (328)
Q Consensus 242 ~i~~~~~~~~~~~gi~~~~spH~lRHtfAt~ll~~G~~~~~v~~~lGH~s~~tT~~Y~h~~~~~~~~~l~~ 312 (328)
T Consensus 228 ~~~~~lk~~~~~agi~~~it~H~lRHTfAt~ll~~G~~l~~vq~~LGHssi~tT~~Y~hv~~e~~~e~~~k 298 (299)
T cd01185 228 NMNKPLKEWAKLAGIKKHITFHCARHTFATLQLLSGGPIETVSKMLGHTNIKTTQVYARVTDEKKSEDMNK 298 (299)
T ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHC
T ss_conf 89999999999828899998114099999999987989999998818998899999987798899999963