HHsearch alignment for GI: 254780882 and conserved domain: cd01185
>cd01185 INT_Tn4399 Tn4399 and related integrases, DNA breaking-rejoining enzymes, integrase/recombinases, N- and C-terminal domains. This CD includes various bacterial integrases, including cLV25, a Bacteroides fragilis chromosomal transfer factor integrase similar to the Bacteroides mobilizable transposon, Tn4399, integrase.
Probab=95.02 E-value=0.067 Score=31.16 Aligned_cols=39 Identities=18% Similarity=0.023 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999998625488999999999999999998512
Q gi|254780882|r 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT 54 (328)
Q Consensus 16 ~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~ 54 (328)
T Consensus 69 ~~i~~f~~~L~~~k~~s~~Ti~~~l~~lr~~~~~a~~~~ 107 (299)
T cd01185 69 EFILEFKLFLRKEKKLSRNTAVHYLSWLKKLLKIAYRDK 107 (299)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999987579888899999999999999999889