HHsearch alignment for GI: 254780882 and conserved domain: cd01187
>cd01187 INT_SG4 INT_SG4, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 4, N- and C-terminal domains. The CD contains mainly predicted bacterial integrase/recombinases for which not much biochemical characterization is available.
Probab=100.00 E-value=0 Score=390.72 Aligned_cols=284 Identities=20% Similarity=0.189 Sum_probs=237.9
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999998625488999999999999999998512147887896898999999999999861210133211234
Q gi|254780882|r 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93 (328)
Q Consensus 14 l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~ls 93 (328)
T Consensus 1 l~~~i~~yl~~~r~-~G~~~~t---~~~~L~~F~~fl~~~~--------~~~~~~~~~~~w~~~--~~~~s~~t~~~rls 66 (299)
T cd01187 1 LRQALEEYIALRRA-LGYKYRT---PARLLRDFVRFLERHG--------AGFITTDLALRWAAS--PPSAQPATWAGRLG 66 (299)
T ss_pred CHHHHHHHHHHHHH-CCCCHHH---HHHHHHHHHHHHHHCC--------CCCCCHHHHHHHHHH--CCCCCHHHHHHHHH
T ss_conf 96999999999998-7998156---8999999999998679--------988899999999987--79998899999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 44222233321012322222222222222121111111015678776531013567757753201222100112332222
Q gi|254780882|r 94 GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173 (328)
Q Consensus 94 ~lr~f~~~~~~~~~i~~np~~~i~~~k~~~~~p~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El 173 (328)
T Consensus 67 ~lr~F~~~l~~~g~~~~~P~~~~~~~k~~~~~P~~lt~~Ei~~Ll~a~~~~~-~~~~~~~~~~~~l~~Lly~tGlR~sEl 145 (299)
T cd01187 67 VVRRFARHRRRADPRTEVPPADLFPRRPRRPTPYIYTDEEIQRLLAAALQLP-PTSGLRPWTYRTLFGLLAVTGLRLGEA 145 (299)
T ss_pred HHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 9999999999869956690765457899999999999999999984110169-961057689999999999958889998
Q ss_pred CCCCCCCCCCCCCCEEEC-CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHH---HHHHH
Q ss_conf 211222223323220332-37853100011221002343221110012344665543211112211100012---35678
Q gi|254780882|r 174 LSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ---RYIRQ 249 (328)
Q Consensus 174 ~~L~~~did~~~~~i~v~-gKg~K~R~Vpi~~~~~~~l~~yl~~~~~~~~~~~~~~lF~~~~g~~ls~~~i~---~~~~~ 249 (328)
T Consensus 146 ~~L~~~Dvd~~~~~i~v~~gKg~K~R~Vpl~~~~~~~L~~yl~~r~~~~~~~~~~~lF~~~~g~~l~~~~~~~~~~~~r~ 225 (299)
T cd01187 146 LRLRLSDVDLDSGILTVRDSKFGKSRLVPLHASTRAALRDYLARRDRLLPAPDSSAFFVSSRGGRLSYGGHRVFYALSRE 225 (299)
T ss_pred HCCCCCCCCCCCCEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 03343305676784765418899707985669999999999998476426898986745899897877789999999999
Q ss_pred HHHHCCC--CCCCCCCCCHHHHHHHHH----HCCCCHH----HHHHHHCCCCHHHHHHHHHHCHHHHHHHHHH
Q ss_conf 9997686--999880541799999999----8489988----9999837888789799996198999999999
Q gi|254780882|r 250 LRRYLGL--PLSTTAHTLRHSFATHLL----SNGGDLR----SIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 (328)
Q Consensus 250 ~~~~~gi--~~~~spH~lRHtfAt~ll----~~G~~~~----~v~~~lGH~s~~tT~~Y~h~~~~~~~~~l~~ 312 (328)
T Consensus 226 ~~~~~~~~~~~~~~pH~LRHtfAt~~l~~~~~~G~di~~~L~~lq~~LGH~si~tT~~Y~h~~~e~l~~a~~r 298 (299)
T cd01187 226 IGLRGWAQRGRGPRLHDLRHRFAVTRLTRWYRAGADVERKLPVLATYLGHANITDTYWYLHASPELMELAARR 298 (299)
T ss_pred HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHH
T ss_conf 9986066668999976571389999999998679973433999999748998688898880399999999850