HHsearch alignment for GI: 254780882 and conserved domain: cd01189
>cd01189 INT_phiLC3_C phiLC3 phage and phage-related integrases, site-specific recombinases, DNA breaking-rejoining enzymes, C-terminal catalytic domain. This CD includes various bacterial (mainly gram positive) and phage integrases, including those similar to Lactococcus phage phiLC3, TPW22, Tuc2009, BK5-T, A2, bIL285, bIL286, bIL311, ul36 and phi g1e; Staphylococcus aureus phage phi13 and phi42; Oenococcus oeni phage fOg44; Streptococcus thermophilus phage O1205 and Sfi21; and Streptococcus pyogenes phage T12 and T270.
Probab=100.00 E-value=4.4e-37 Score=250.93 Aligned_cols=171 Identities=27% Similarity=0.374 Sum_probs=146.3
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC--------------C
Q ss_conf 11111015678776531013567757753201222100112332222211222223323220332--------------3
Q gi|254780882|r 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--------------G 192 (328)
Q Consensus 127 ~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~L~~~did~~~~~i~v~--------------g 192 (328)
T Consensus 1 ~yLt~~Ei~~ll~~~~~~~-------~~~~~~~~~l~~~tGlR~~Ei~~L~~~did~~~~~i~v~~~~~~~~~~~~~~~~ 73 (191)
T cd01189 1 KFLTKEELKKLLEYLKKHE-------NSFSKLLILLLAYTGLRIGEALALTWSDIDFENNTITINKTWDYKTGGYIFKPP 73 (191)
T ss_pred CCCCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHCCCHHHHHHCCHHHCCCCCCEEEEECCEEECCCCEEECCC
T ss_conf 9899999999999875668-------978999999999978149999728999946555858984101211353033577
Q ss_pred CCCC-CCCCCCCCCCHHHHHHHHHHHCCC---CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHH
Q ss_conf 7853-100011221002343221110012---344665543211112211100012356789997686999880541799
Q gi|254780882|r 193 KGDK-IRIVPLLPSVRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 (328)
Q Consensus 193 Kg~K-~R~Vpi~~~~~~~l~~yl~~~~~~---~~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~gi~~~~spH~lRHt 268 (328)
T Consensus 74 Kt~~~~R~v~i~~~~~~~L~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~~~~~~~~~~~~~~~~gi~-~~~~H~lRHT 152 (191)
T cd01189 74 KTKSSIRTIPLDKKTIAILKEYKKEQKKYLLGEINNDDELVFTNKGGKISTPSTINKRLKRICKKAGIP-KITFHGLRHT 152 (191)
T ss_pred CCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCC-CCCHHHHHHH
T ss_conf 788872488479999999999999977764035789874376469999178889999999999980898-0563435999
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCCHHHH-HHHHHHCHHH
Q ss_conf 999999848998899998378887897-9999619899
Q gi|254780882|r 269 FATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKN 305 (328)
Q Consensus 269 fAt~ll~~G~~~~~v~~~lGH~s~~tT-~~Y~h~~~~~ 305 (328)
T Consensus 153 ~aT~l~~~G~~~~~i~~~lGH~s~~~T~~~Y~h~~~~~ 190 (191)
T cd01189 153 HASLLLEAGVSIKYVSERLGHADISTTLDTYSHLLPEK 190 (191)
T ss_pred HHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCC
T ss_conf 99999996999999999858998899997711669465