HHsearch alignment for GI: 254780882 and conserved domain: cd01189

>cd01189 INT_phiLC3_C phiLC3 phage and phage-related integrases, site-specific recombinases, DNA breaking-rejoining enzymes, C-terminal catalytic domain. This CD includes various bacterial (mainly gram positive) and phage integrases, including those similar to Lactococcus phage phiLC3, TPW22, Tuc2009, BK5-T, A2, bIL285, bIL286, bIL311, ul36 and phi g1e; Staphylococcus aureus phage phi13 and phi42; Oenococcus oeni phage fOg44; Streptococcus thermophilus phage O1205 and Sfi21; and Streptococcus pyogenes phage T12 and T270.
Probab=100.00  E-value=4.4e-37  Score=250.93  Aligned_cols=171  Identities=27%  Similarity=0.374  Sum_probs=146.3

Q ss_pred             CCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC--------------C
Q ss_conf             11111015678776531013567757753201222100112332222211222223323220332--------------3
Q gi|254780882|r  127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--------------G  192 (328)
Q Consensus       127 ~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~L~~~did~~~~~i~v~--------------g  192 (328)
T Consensus         1 ~yLt~~Ei~~ll~~~~~~~-------~~~~~~~~~l~~~tGlR~~Ei~~L~~~did~~~~~i~v~~~~~~~~~~~~~~~~   73 (191)
T cd01189           1 KFLTKEELKKLLEYLKKHE-------NSFSKLLILLLAYTGLRIGEALALTWSDIDFENNTITINKTWDYKTGGYIFKPP   73 (191)
T ss_pred             CCCCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHCCCHHHHHHCCHHHCCCCCCEEEEECCEEECCCCEEECCC
T ss_conf             9899999999999875668-------978999999999978149999728999946555858984101211353033577


Q ss_pred             CCCC-CCCCCCCCCCHHHHHHHHHHHCCC---CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHH
Q ss_conf             7853-100011221002343221110012---344665543211112211100012356789997686999880541799
Q gi|254780882|r  193 KGDK-IRIVPLLPSVRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS  268 (328)
Q Consensus       193 Kg~K-~R~Vpi~~~~~~~l~~yl~~~~~~---~~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~gi~~~~spH~lRHt  268 (328)
T Consensus        74 Kt~~~~R~v~i~~~~~~~L~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~~~~~~~~~~~~~~~~gi~-~~~~H~lRHT  152 (191)
T cd01189          74 KTKSSIRTIPLDKKTIAILKEYKKEQKKYLLGEINNDDELVFTNKGGKISTPSTINKRLKRICKKAGIP-KITFHGLRHT  152 (191)
T ss_pred             CCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCC-CCCHHHHHHH
T ss_conf             788872488479999999999999977764035789874376469999178889999999999980898-0563435999


Q ss_pred             HHHHHHHCCCCHHHHHHHHCCCCHHHH-HHHHHHCHHH
Q ss_conf             999999848998899998378887897-9999619899
Q gi|254780882|r  269 FATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKN  305 (328)
Q Consensus       269 fAt~ll~~G~~~~~v~~~lGH~s~~tT-~~Y~h~~~~~  305 (328)
T Consensus       153 ~aT~l~~~G~~~~~i~~~lGH~s~~~T~~~Y~h~~~~~  190 (191)
T cd01189         153 HASLLLEAGVSIKYVSERLGHADISTTLDTYSHLLPEK  190 (191)
T ss_pred             HHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCC
T ss_conf             99999996999999999858998899997711669465