HHsearch alignment for GI: 254780882 and conserved domain: cd01190
>cd01190 INT_SG5 INT_SG5, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 5, N- and C-terminal domains. The CD contains mainly predicted bacterial integrase/recombinases.
Probab=96.18 E-value=0.018 Score=34.67 Aligned_cols=62 Identities=21% Similarity=0.236 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCC--------------CCCCHHHCCHHHHHHHHHH
Q ss_conf 9999999999986254889999999999999999985121478--------------8789689899999999999
Q gi|254780882|r 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI--------------TIQTIRQLSYTEIRAFISK 77 (328)
Q Consensus 16 ~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~--------------~~~~~~~i~~~~i~~~l~~ 77 (328)
T Consensus 11 ~~i~~y~~~L~~~rg~s~~Tin~~l~~L~~f~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~l~~eei~~ll~~ 86 (260)
T cd01190 11 PLILAFLDHLENDRGNSIRTRNARLAALHSFFRYAAREVPEHLPTIQRVLAIPMKRFKRPLVTYLTREEVQALLAA 86 (260)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHC
T ss_conf 9999999999984699999999999999999999998084014553710148878889999988999999999818