HHsearch alignment for GI: 254780882 and conserved domain: cd01194
>cd01194 INT_Tn554A_C Tn544A and related transposases, DNA breaking-rejoining enzymes, integrase/recombinases, C-terminal catalytic domain. This CD includes various bacterial transposases similar to TnpA from transposon Tn554.
Probab=100.00 E-value=1.3e-39 Score=266.86 Aligned_cols=170 Identities=25% Similarity=0.374 Sum_probs=147.0
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC----------CCCCCCC
Q ss_conf 111015678776531013567757753201222100112332222211222223323220332----------3785310
Q gi|254780882|r 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ----------GKGDKIR 198 (328)
Q Consensus 129 lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~L~~~did~~~~~i~v~----------gKg~K~R 198 (328)
T Consensus 1 LT~~Ev~~ll~a~~----------~~Rd~~i~~ll~~TGlR~gE~~~L~~~Did~~~~~i~i~~~~~~~~~~~~K~~~~r 70 (186)
T cd01194 1 LTPSEVQRLINACG----------NLRDKFLFALLYETGLRIGEALGLRIEDIDLAENQIWLVPREDNANGARAKSGRER 70 (186)
T ss_pred CCHHHHHHHHHHCC----------HHHHHHHHHHHHHHCCCHHHHHHCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCEE
T ss_conf 99899999998154----------03899999999996989888970889872576998999854455555203688425
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC----CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 0011221002343221110012344665543211112----211100012356789997686999880541799999999
Q gi|254780882|r 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG----KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 (328)
Q Consensus 199 ~Vpi~~~~~~~l~~yl~~~~~~~~~~~~~~lF~~~~g----~~ls~~~i~~~~~~~~~~~gi~~~~spH~lRHtfAt~ll 274 (328)
T Consensus 71 ~vpi~~~l~~~~~~~~~~~~~~-~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~H~lRHT~at~l~ 147 (186)
T cd01194 71 RIPVSQYLIDLYVDYVTEIYYL-EELESDYVFVNVKGGNQGKPLNYTDVYDLVRRLKKKTGI--DFTPHMFRHTHATELI 147 (186)
T ss_pred EEECCHHHHHHHHHHHHHHHHH-HCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCC--CCCCCCCHHHHHHHHH
T ss_conf 8877799999999999997633-215777445633577568877799999999999998499--8774575999999999
Q ss_pred HCCCCHHHHHHHHCCCCHHHH-HHHHHHCHHHHHHHHH
Q ss_conf 848998899998378887897-9999619899999999
Q gi|254780882|r 275 SNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMM 311 (328)
Q Consensus 275 ~~G~~~~~v~~~lGH~s~~tT-~~Y~h~~~~~~~~~l~ 311 (328)
T Consensus 148 ~~G~~~~~v~~~lGH~~~~tT~~~Y~h~~~e~~~~~~~ 185 (186)
T cd01194 148 RAGWSIEVVADRLGHAHVQTTLNTYGHLSEEDIRREFN 185 (186)
T ss_pred HCCCCHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHC
T ss_conf 87999999999828998799999845689999999865