HHsearch alignment for GI: 254780882 and conserved domain: cd01197

>cd01197 INT_FimBE_C FimB and FimE and related proteins, DNA breaking-rejoining enzymes, integrase/recombinases, catalytic domain. This CD includes those proteins similar to E.coli FimE and FimB regulatory proteins and Proteus mirabilis MrpI.
Probab=100.00  E-value=1.3e-43  Score=291.68  Aligned_cols=174  Identities=28%  Similarity=0.375  Sum_probs=156.4

Q ss_pred             CCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC-CCCCCCCCCCCCCC
Q ss_conf             11111015678776531013567757753201222100112332222211222223323220332-37853100011221
Q gi|254780882|r  127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPS  205 (328)
Q Consensus       127 ~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~L~~~did~~~~~i~v~-gKg~K~R~Vpi~~~  205 (328)
T Consensus         3 ~~Lt~eEi~~ll~~~~~~------~~~~Rd~~i~~ll~~tGlR~~El~~L~~~did~~~~~i~i~~~K~~~~~~~pl~~~   76 (180)
T cd01197           3 KYLTPSEVRSLLKAALDG------RYSARDYCLMLLMFRHGLRVSEACGLKLSDIDLESRQIYIRRLKGGFSTTHPLRDD   76 (180)
T ss_pred             CCCCHHHHHHHHHCCCCC------CCCHHHHHHHHHHHHHCCCHHHHHHCCHHHCCCCCCEEEEEEECCCCEEEECCCHH
T ss_conf             899999999999651507------64389999999999959529999518176561788848999704773036338289


Q ss_pred             CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHH
Q ss_conf             00234322111001234466554321111221110001235678999768699988054179999999984899889999
Q gi|254780882|r  206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS  285 (328)
Q Consensus       206 ~~~~l~~yl~~~~~~~~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~gi~~~~spH~lRHtfAt~ll~~G~~~~~v~~  285 (328)
T Consensus        77 ~~~~l~~~~~~~~~~-~~~~~~~lF~s~~g~~l~~~~i~~~~~~~~~~agl~~~~~~H~lRHt~At~l~~~G~~i~~Iq~  155 (180)
T cd01197          77 ELEALKNWLEIRAWK-GLPDSDWIFLSRRGGPLSRQQVYKLIRRLGAQAGLSIKVHPHMLRHACGYALANQGADTRLIQD  155 (180)
T ss_pred             HHHHHHHHHHHHHHC-CCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHH
T ss_conf             999999999986620-4775411222688884218889999999999828876678987789999999987999999999


Q ss_pred             HHCCCCHHHHHHHHHHCHHHHH
Q ss_conf             8378887897999961989999
Q gi|254780882|r  286 ILGHFRLSTTQIYTNVNSKNGG  307 (328)
Q Consensus       286 ~lGH~s~~tT~~Y~h~~~~~~~  307 (328)
T Consensus       156 ~LGH~~i~tT~~Yth~~~~~l~  177 (180)
T cd01197         156 YLGHRNIRHTVIYTASNAARFL  177 (180)
T ss_pred             HHCCCCHHHHHHHHHCCHHHHH
T ss_conf             8389987999999967999998