HHsearch alignment for GI: 254780882 and conserved domain: pfam02899
>pfam02899 Phage_integr_N Phage integrase, N-terminal SAM-like domain.
Probab=99.65 E-value=7.6e-16 Score=118.28 Aligned_cols=83 Identities=35% Similarity=0.570 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999986254889999999999999999985121478878968989999999999998612101332112344422
Q gi|254780882|r 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97 (328)
Q Consensus 18 ~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~ls~lr~ 97 (328)
T Consensus 1 i~~fl~~L~~er~~S~~Ti~aY~~dL~~f~~~l~~~------~~~~~~i~~~~i~~yl~~l~~~~~s~~Ti~r~lsalr~ 74 (83)
T pfam02899 1 IDQFLEYLSLERGLSPNTVRAYRRDLKAFLKFLAEG------GLSLDQLTTDDVRAFLAELLREGLSAASLARRLSALRS 74 (83)
T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC------CCCHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 988899999885849999999999999999999874------99988868998999999987089889999999999999
Q ss_pred HHHHHHHHC
Q ss_conf 223332101
Q gi|254780882|r 98 FLKYLKKRK 106 (328)
Q Consensus 98 f~~~~~~~~ 106 (328)
T Consensus 75 F~~~l~~eG 83 (83)
T pfam02899 75 FFQFLKREG 83 (83)
T ss_pred HHHHHHHHC
T ss_conf 999999719