HHsearch alignment of GI: 254780882 and MMDB domain: 1z1b_A_167-356
>1z1b_A (A:167-356) Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda}
Probab=99.93 E-value=1.6e-26 Score=184.56 Aligned_cols=175 Identities=17% Similarity=0.143 Sum_probs=128.5
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 22222121111111015678776531013567757753201222100112332222211222223323220332378531
Q gi|254780882|r 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 (328)
Q Consensus 118 ~~k~~~~~p~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~L~~~did~~~~~i~v~gKg~K~ 197 (328)
.||.+++.+++++.+|+.++++++.... .|++++|.|++.||||+||+++|+|+|||++...+.+...+.+.
T Consensus 3 k~k~~~~~~~~lt~eei~~l~~~~~~~~--------~~~~~~~~l~~~tGlR~~E~~~l~~~di~~~~~~~~~~~~~~~~ 74 (190)
T 1z1b_A 3 RAAKSKVRRSRLTADEYLKIYQAAESSP--------CWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKI 74 (190)
T ss_dssp CCCCCCCCBCCCCHHHHHHHHHHTTSSC--------HHHHHHHHHHHHHCCCHHHHTTCBGGGEETTEEEEECTTTCCEE
T ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCC--------CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 2223344332220366766420122455--------02457889998741244664333322122322222234443302
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC--CCCCCCCCHHHHHHHHHH
Q ss_conf 000112210023432211100123446655432111122111000123567899976869--998805417999999998
Q gi|254780882|r 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP--LSTTAHTLRHSFATHLLS 275 (328)
Q Consensus 198 R~Vpi~~~~~~~l~~yl~~~~~~~~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~gi~--~~~spH~lRHtfAt~ll~ 275 (328)
.. +........+.................++|++..|...........+.++.+.++.. ...++|.+||||||.|++
T Consensus 75 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~t~at~l~~ 153 (190)
T 1z1b_A 75 AI-PTALHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYE 153 (190)
T ss_dssp EE-ETTCEETTTTEEHHHHHHHHHHHTCSSBSSCCTTSCCCCHHHHHHHHHHHHHHHTCCCSSBCCCTTHHHHHHHHHHH
T ss_pred EC-CCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 12-55421025677654433310345777314115567757888999999999998599978899974828999999998
Q ss_pred CCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 48998899998378887897999961
Q gi|254780882|r 276 NGGDLRSIQSILGHFRLSTTQIYTNV 301 (328)
Q Consensus 276 ~G~~~~~v~~~lGH~s~~tT~~Y~h~ 301 (328)
+|+|+..||++|||+|++||++|.+.
T Consensus 154 ~g~~~~~i~~~lGH~~~~~T~~yy~~ 179 (190)
T 1z1b_A 154 KQISDKFAQHLLGHKSDTMASQXRDD 179 (190)
T ss_dssp HHTCHHHHHHHHTCSSHHHHHHHTCC
T ss_pred CCCCHHHHHHHHCCCCHHHHHHHHCC
T ss_conf 69999999998389988999988327