HHsearch alignment of GI: 254780882 and MMDB domain: 2khq_A_
>2khq_A (A:) Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp}
Probab=99.51 E-value=6.2e-14 Score=105.96 Aligned_cols=102 Identities=10% Similarity=0.107 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999862548899999999999999999851214788789689899999999999986121013321123
Q gi|254780882|r 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92 (328)
Q Consensus 13 ~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~l 92 (328)
++.+.+++|+++++. +++|++|+++|+..++.|..|++ ..++.+++..++.+|+.++.. +.|++|+++.+
T Consensus 3 t~~~~~~~~~~~~~~-~~~s~~T~~~y~~~~~~~~~~~~--------~~~i~~i~~~~i~~~~~~l~~-~~s~~t~~~~~ 72 (110)
T 2khq_A 3 TFADYFYQWYEVNKL-PHVSESTKRHYESAYKHIKDHFR--------HKLLKDIKRTEYQKFLNEYGL-THSYETIRKLN 72 (110)
T ss_dssp BHHHHHHHHHHHHTG-GGSCHHHHHHHHHHHHHHHHHCS--------SCBGGGCCHHHHHHHHHHHHH-HSCHHHHHHHH
T ss_pred EHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHCCHHHHC--------CCHHHHCCHHHHHHHHHHHHH-CCCHHHHHHHH
T ss_conf 389999999998642-77899999999998860177738--------106854369999999998630-15889999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 44422223332101232222222222222212
Q gi|254780882|r 93 SGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 (328)
Q Consensus 93 s~lr~f~~~~~~~~~i~~np~~~i~~~k~~~~ 124 (328)
++|++||+||++.|+++.||+.+++.|+..++
T Consensus 73 ~~l~~~f~~a~~~~~i~~nP~~~i~~~~~~~~ 104 (110)
T 2khq_A 73 SYIRNAFDDAIHEGYVIKNPTYKAELHASVLE 104 (110)
T ss_dssp HHHHHHHHHHHHTTCCCCCGGGGCCCCCGGGC
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCEECCCHHH
T ss_conf 99999999999887910198777874643112