HHsearch alignment of GI: 254780882 and MMDB domain: 2khv_A_
>2khv_A (A:) Phage integrase; solution structure, GFT, NESG, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=99.19 E-value=2.5e-11 Score=89.62 Aligned_cols=101 Identities=8% Similarity=0.056 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999862548899999999999999-99985121478878968989999999999998612101332112
Q gi|254780882|r 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFL-IFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 (328)
Q Consensus 13 ~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~-~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~ 91 (328)
++.+.+++|++.... .++|++|++.|+..++.++ .++ +..++.+++..+++.|+..+.. .|++|+++.
T Consensus 2 T~~~~~~~~~~~~~~-~~~~~~T~~~~~~~~~~~i~~~~--------g~~~i~~it~~~i~~~~~~~~~--~s~~t~~~~ 70 (106)
T 2khv_A 2 TFSECAALYIKAHRS-SWKNTKHADQWTNTIKTYCGPVI--------GPLSVQDVDTKLIMKVLDPIWE--QKPETASRL 70 (106)
T ss_dssp BHHHHHHHHHHTTGG-GGTTSTHHHHHHHHHHHHTHHHH--------TTSBSSSCCHHHHHHHHHHHHH--HCHHHHHHH
T ss_pred CHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHCCCC--------CCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_conf 799999999998420-47986699999999998735234--------9964999767999999999996--328999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 344422223332101232222222222222212
Q gi|254780882|r 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 (328)
Q Consensus 92 ls~lr~f~~~~~~~~~i~~np~~~i~~~k~~~~ 124 (328)
++.|+++|+||++.|+++.||+.+++.|+..++
T Consensus 71 ~~~l~~~f~~A~~~~~i~~Np~~~i~~~~~~~k 103 (106)
T 2khv_A 71 RGRIESVLDWATVRGYREGDNPARWRGYLEHHH 103 (106)
T ss_dssp HHHHHHHHHHHHHHTSSCSCCTTSCSSTTTTTT
T ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCC
T ss_conf 999999999999929767898188873020143