HHsearch alignment of GI: 254780882 and MMDB domain: 2khv_A_

>2khv_A (A:) Phage integrase; solution structure, GFT, NESG, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=99.19  E-value=2.5e-11  Score=89.62  Aligned_cols=101  Identities=8%  Similarity=0.056  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999862548899999999999999-99985121478878968989999999999998612101332112
Q gi|254780882|r   13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFL-IFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS   91 (328)
Q Consensus        13 ~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~-~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~   91 (328)
                      ++.+.+++|++.... .++|++|++.|+..++.++ .++        +..++.+++..+++.|+..+..  .|++|+++.
T Consensus         2 T~~~~~~~~~~~~~~-~~~~~~T~~~~~~~~~~~i~~~~--------g~~~i~~it~~~i~~~~~~~~~--~s~~t~~~~   70 (106)
T 2khv_A            2 TFSECAALYIKAHRS-SWKNTKHADQWTNTIKTYCGPVI--------GPLSVQDVDTKLIMKVLDPIWE--QKPETASRL   70 (106)
T ss_dssp             BHHHHHHHHHHTTGG-GGTTSTHHHHHHHHHHHHTHHHH--------TTSBSSSCCHHHHHHHHHHHHH--HCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHCCCC--------CCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_conf             799999999998420-47986699999999998735234--------9964999767999999999996--328999999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             344422223332101232222222222222212
Q gi|254780882|r   92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNS  124 (328)
Q Consensus        92 ls~lr~f~~~~~~~~~i~~np~~~i~~~k~~~~  124 (328)
                      ++.|+++|+||++.|+++.||+.+++.|+..++
T Consensus        71 ~~~l~~~f~~A~~~~~i~~Np~~~i~~~~~~~k  103 (106)
T 2khv_A           71 RGRIESVLDWATVRGYREGDNPARWRGYLEHHH  103 (106)
T ss_dssp             HHHHHHHHHHHHHHTSSCSCCTTSCSSTTTTTT
T ss_pred             HHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCC
T ss_conf             999999999999929767898188873020143