HHsearch alignment of GI: 254780882 and MMDB domain: 2kj8_A_
>2kj8_A (A:) Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12}
Probab=99.23 E-value=2.2e-11 Score=89.95 Aligned_cols=112 Identities=5% Similarity=-0.013 Sum_probs=90.3
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98999999999999998625488999999999999999998512147887896898999999999999861210133211
Q gi|254780882|r 11 SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90 (328)
Q Consensus 11 ~~~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~ 90 (328)
+.++.+.+++|+++.+ ++++++|+..|...++.++...- +..++.+|+..++..|+.++.. +.|++|+++
T Consensus 4 ~~t~~~~~~~~~~~~~--~~~~~~t~~~~~~~~~~~i~~~~-------g~~~l~~i~~~~i~~~~~~~~~-~~s~~t~~~ 73 (118)
T 2kj8_A 4 NNSFSAIYKEWYEHKK--QVWSVGYATELAKMFDDDILPII-------GGLEIQDIEPMQLLEVIRRFED-RGAMERANK 73 (118)
T ss_dssp TTBHHHHHHHHHHHHT--TTSCHHHHHHHHHHHHHHHHHHH-------TTSBTTSCCHHHHHHHHHHHHT-TTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHH-------CCCCHHHHCHHHHHHHHHHHHH-CCCCHHHHH
T ss_conf 4559999999999860--41899999999999999978885-------8780999189999999999998-399448899
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC--CCCCCC
Q ss_conf 234442222333210123222222222222221211--111110
Q gi|254780882|r 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP--RALNEK 132 (328)
Q Consensus 91 ~ls~lr~f~~~~~~~~~i~~np~~~i~~~k~~~~~p--~~lt~~ 132 (328)
.++.|+++|+||+..|++..||+.+++.++...+.+ ++++.|
T Consensus 74 ~~~~l~~~~~~A~~~g~i~~NP~~~i~~~~~~~~~~~~~~lt~E 117 (118)
T 2kj8_A 74 ARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNLEHHHHH 117 (118)
T ss_dssp HHHHHHHHHHHHHHTTSCSCCSHHHHHHHHHHGGGTSCCSSCSC
T ss_pred HHHHHHHHHHHHHHCCCHHCCCHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 99999999999998688300877789863699888777555677