HHsearch alignment of GI: 254780882 and MMDB domain: 2kj9_A_

>2kj9_A (A:) Integrase; DNA_BRE_C superfamily, INTB, PSI-2, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum}
Probab=99.22  E-value=1.8e-11  Score=90.58  Aligned_cols=108  Identities=11%  Similarity=0.044  Sum_probs=88.8

Q ss_pred             HHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             43149899999999999999862548899999999999999999851214788789689899999999999986121013
Q gi|254780882|r    7 PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR   86 (328)
Q Consensus         7 ~~~~~~~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~   86 (328)
                      ......++.+++++|++.   .++++++|+.+|++.+..++       .+.++..++.+|+..++..|+..+.. +.+++
T Consensus         6 ~~~~~~Tf~~~~~~~l~~---~~~~~~~T~~~~~~~~~~~i-------~~~~g~~~i~~it~~~i~~~~~~~~~-~~s~~   74 (118)
T 2kj9_A            6 KRNNTRAFKTVAKSWFAT---KTTWSEDYQRSVWTRLETYL-------FPDIGNKDIAELDTGDLLVPIKKIEK-LGYLE   74 (118)
T ss_dssp             SSSSCSBHHHHHHHHHHT---CCSSCHHHHHHHHHHHHHTS-------STTGGGSBGGGCCHHHHHHHHHHHHT-TTCHH
T ss_pred             HHHCCCCHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHHH-------HHHHCCCCHHHHHHHHHHHHHHHHHH-CCCCH
T ss_conf             777347799999999998---78888879999999999887-------89867885999558999999999999-07928


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             321123444222233321012322222222222222121
Q gi|254780882|r   87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL  125 (328)
Q Consensus        87 T~~~~ls~lr~f~~~~~~~~~i~~np~~~i~~~k~~~~~  125 (328)
                      |+++.++.|+++|+||++.++|+.||+.+++.|+..+..
T Consensus        75 t~~~~~~~l~~if~~Av~~~~i~~NP~~~v~~~k~~~~~  113 (118)
T 2kj9_A           75 IAMRVKQYATAIMRYAVQQKMIRFNPAYDLEGAVQKLEH  113 (118)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSSSSCHHHHCCSCSSSSSS
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCC
T ss_conf             899999999999999998788121848889876689865