HHsearch alignment of GI: 254780882 and MMDB domain: 2kj9_A_
>2kj9_A (A:) Integrase; DNA_BRE_C superfamily, INTB, PSI-2, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum}
Probab=99.22 E-value=1.8e-11 Score=90.58 Aligned_cols=108 Identities=11% Similarity=0.044 Sum_probs=88.8
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 43149899999999999999862548899999999999999999851214788789689899999999999986121013
Q gi|254780882|r 7 PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 (328)
Q Consensus 7 ~~~~~~~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~ 86 (328)
......++.+++++|++. .++++++|+.+|++.+..++ .+.++..++.+|+..++..|+..+.. +.+++
T Consensus 6 ~~~~~~Tf~~~~~~~l~~---~~~~~~~T~~~~~~~~~~~i-------~~~~g~~~i~~it~~~i~~~~~~~~~-~~s~~ 74 (118)
T 2kj9_A 6 KRNNTRAFKTVAKSWFAT---KTTWSEDYQRSVWTRLETYL-------FPDIGNKDIAELDTGDLLVPIKKIEK-LGYLE 74 (118)
T ss_dssp SSSSCSBHHHHHHHHHHT---CCSSCHHHHHHHHHHHHHTS-------STTGGGSBGGGCCHHHHHHHHHHHHT-TTCHH
T ss_pred HHHCCCCHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHHH-------HHHHCCCCHHHHHHHHHHHHHHHHHH-CCCCH
T ss_conf 777347799999999998---78888879999999999887-------89867885999558999999999999-07928
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 321123444222233321012322222222222222121
Q gi|254780882|r 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 (328)
Q Consensus 87 T~~~~ls~lr~f~~~~~~~~~i~~np~~~i~~~k~~~~~ 125 (328)
|+++.++.|+++|+||++.++|+.||+.+++.|+..+..
T Consensus 75 t~~~~~~~l~~if~~Av~~~~i~~NP~~~v~~~k~~~~~ 113 (118)
T 2kj9_A 75 IAMRVKQYATAIMRYAVQQKMIRFNPAYDLEGAVQKLEH 113 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSSCHHHHCCSCSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCC
T ss_conf 899999999999999998788121848889876689865