HHsearch alignment of GI: 254780882 and MMDB domain: 2kkv_A_

>2kkv_A (A:) Integrase; protein structure, PSI, nesgc, structural genomics, protein structure initiative, northeast structural genomics consortium; NMR {Salmonella enterica subsp}
Probab=99.35  E-value=1.1e-12  Score=98.24  Aligned_cols=117  Identities=11%  Similarity=0.105  Sum_probs=95.1

Q ss_pred             HHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             43149899999999999999862548899999999999999999851214788789689899999999999986121013
Q gi|254780882|r    7 PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR   86 (328)
Q Consensus         7 ~~~~~~~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~   86 (328)
                      +...+.++.+.+++|++.   .++++++|+..|+..++.|+.       +.++..++.+|+..++..|+..+... .+++
T Consensus         2 ~~~~~~t~~~~~~~~~~~---~~~~~~~T~~~y~~~~~~~i~-------~~~g~~~i~~it~~~i~~~~~~l~~~-~~~~   70 (121)
T 2kkv_A            2 ENSGAYTFETIAREWHES---NKRWSEDHRSRVLRYLELYIF-------PHIGSSDIRQLKTSHLLAPIKEVDTS-GKHD   70 (121)
T ss_dssp             CSCCCCSHHHHHHHHHTT---CCSSCHHHHHHHHHHHHHHHS-------SSSTTSCTTCCCSGGGHHHHHHHHHT-TTHH
T ss_pred             CCCHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHHHH-------HHHCCCCHHHHCHHHHHHHHHHHHCC-CCHH
T ss_conf             442404899999999997---797888499999999998999-------99388269997637667777487504-7879


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC--CCCCCCCCCCCHH
Q ss_conf             32112344422223332101232222222222222--2121111111015
Q gi|254780882|r   87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRALNEKQA  134 (328)
Q Consensus        87 T~~~~ls~lr~f~~~~~~~~~i~~np~~~i~~~k~--~~~~p~~lt~~e~  134 (328)
                      |+++.++.|+++|+||++.|++..||+.+++.++.  ....+++|+.+|+
T Consensus        71 t~~~~~~~l~~~~~~Av~~~~i~~NP~~~v~~~~~~~~~~~~~~lt~~Ei  120 (121)
T 2kkv_A           71 VAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGALSTTKARHYPLEHHHHH  120 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSSCSCSCSSSSCCCSCCCCCSSCCTTCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             99999999999999999878901186878987469999898998766677