HHsearch alignment of GI: 254780882 and MMDB domain: 2kkv_A_
>2kkv_A (A:) Integrase; protein structure, PSI, nesgc, structural genomics, protein structure initiative, northeast structural genomics consortium; NMR {Salmonella enterica subsp}
Probab=99.35 E-value=1.1e-12 Score=98.24 Aligned_cols=117 Identities=11% Similarity=0.105 Sum_probs=95.1
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 43149899999999999999862548899999999999999999851214788789689899999999999986121013
Q gi|254780882|r 7 PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 (328)
Q Consensus 7 ~~~~~~~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~ 86 (328)
+...+.++.+.+++|++. .++++++|+..|+..++.|+. +.++..++.+|+..++..|+..+... .+++
T Consensus 2 ~~~~~~t~~~~~~~~~~~---~~~~~~~T~~~y~~~~~~~i~-------~~~g~~~i~~it~~~i~~~~~~l~~~-~~~~ 70 (121)
T 2kkv_A 2 ENSGAYTFETIAREWHES---NKRWSEDHRSRVLRYLELYIF-------PHIGSSDIRQLKTSHLLAPIKEVDTS-GKHD 70 (121)
T ss_dssp CSCCCCSHHHHHHHHHTT---CCSSCHHHHHHHHHHHHHHHS-------SSSTTSCTTCCCSGGGHHHHHHHHHT-TTHH
T ss_pred CCCHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHHHH-------HHHCCCCHHHHCHHHHHHHHHHHHCC-CCHH
T ss_conf 442404899999999997---797888499999999998999-------99388269997637667777487504-7879
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC--CCCCCCCCCCCHH
Q ss_conf 32112344422223332101232222222222222--2121111111015
Q gi|254780882|r 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRALNEKQA 134 (328)
Q Consensus 87 T~~~~ls~lr~f~~~~~~~~~i~~np~~~i~~~k~--~~~~p~~lt~~e~ 134 (328)
|+++.++.|+++|+||++.|++..||+.+++.++. ....+++|+.+|+
T Consensus 71 t~~~~~~~l~~~~~~Av~~~~i~~NP~~~v~~~~~~~~~~~~~~lt~~Ei 120 (121)
T 2kkv_A 71 VAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGALSTTKARHYPLEHHHHH 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSCSCSCSSSSCCCSCCCCCSSCCTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 99999999999999999878901186878987469999898998766677