HHsearch alignment of GI: 254780882 and MMDB domain: 2kob_A_

>2kob_A (A:) Uncharacterized protein; alpha beta, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium leptum dsm 753}
Probab=99.44  E-value=2.9e-13  Score=101.73  Aligned_cols=104  Identities=16%  Similarity=0.166  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999999999999986254889999999999999999985121478878968989999999999998612101332112
Q gi|254780882|r   12 FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS   91 (328)
Q Consensus        12 ~~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~   91 (328)
                      .++.+.+++|+.+++. +++|++|+++|+..++.|..|++.        ..+.+|+..+|+.|+.   +.+.+++|+++.
T Consensus         2 ~t~~~~~~~~l~~~~~-~~~s~~T~~~y~~~~~~~~~~~g~--------~~i~~it~~~i~~~l~---~~~~s~~t~~~~   69 (108)
T 2kob_A            2 DSFGDWAEKFLKSKEA-DGVSVSQLNSYKNYCRNHLSPLYM--------KSLSEILPADIQSIIN---ETKLAKNTLKAI   69 (108)
T ss_dssp             CBHHHHHHHHHHHHHH-HTCCHHHHHHHHHHHHHTSHHHHT--------SBGGGCCHHHHHHHHH---HCCCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHCCC-CCCCCCEEEHHHHHHHCCCCCCCC--------CCCCCCCHHHHHHHHH---HHCCHHHHHHHH
T ss_conf             3699999999998140-786846531233333122100277--------5401026888740000---101018899999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             344422223332101232222222222222212111
Q gi|254780882|r   92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR  127 (328)
Q Consensus        92 ls~lr~f~~~~~~~~~i~~np~~~i~~~k~~~~~p~  127 (328)
                      +++|++||+||+++|++..||+.+++.|+.+++.++
T Consensus        70 ~~~l~~~~~~a~~~~~i~~NP~~~i~~~~~~~~~~~  105 (108)
T 2kob_A           70 RNTASQIFRLAIENRAIDFNPADYVRIPKIALEHHH  105 (108)
T ss_dssp             HHHHHHHHHHHHHTTSSSSCGGGTCCCCCCCCSSCC
T ss_pred             HHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCC
T ss_conf             999999999998778923690530857898864456