HHsearch results for GI: 254780882 and protein with PDBid: 1a0p_A
>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1
Probab=100.00 E-value=0 Score=335.89 Aligned_cols=281 Identities=30% Similarity=0.426 Sum_probs=229.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999862548899999999999999999851214788789689899999999999986121013321123444
Q gi|254780882|r 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95 (328)
Q Consensus 16 ~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~ls~l 95 (328)
..||+||+++..|||+||+|+++|+.+|+.|..||.... .++.+++..+|.+|+.++...+.+++|+++++++|
T Consensus 4 ~~i~~fl~~l~~er~ls~~T~~~Y~~~l~~f~~~l~~~~------~~~~~i~~~~i~~~~~~l~~~~~s~~t~~~~l~~l 77 (290)
T 1a0p_A 4 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG------LTLATAQSDDLQALLAERLEGGYKATSSARLLSAV 77 (290)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHTS------CCTTTCCHHHHHHHHHSCC-------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC------CCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 999999999999869089999999999999999998859------99376999999999999987799889999999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 22223332101232222222222222212111111101567877653101356775775320122210011233222221
Q gi|254780882|r 96 KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175 (328)
Q Consensus 96 r~f~~~~~~~~~i~~np~~~i~~~k~~~~~p~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~ 175 (328)
++||+|+..++++..+|+..+..|+..+..+......+....+. ..........|+++++.+++.||||++|+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~tG~R~~Ei~~ 152 (290)
T 1a0p_A 78 RRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ-----APLIDQPLELRDKAMLEVLYATGLRVSELVG 152 (290)
T ss_dssp HHHHHHHHHTTSSSSCTTSCC----------CCCCHHHHHHHHH-----CSCTTSHHHHHHHHHHHHHHHHCCCHHHHTT
T ss_pred HHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHH-----HHHCCCCHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 99999999824334681765037776666765100899999875-----2100134118999999999995877899980
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 122222332322033237853100011221002343221110012-3446655432111122111000123567899976
Q gi|254780882|r 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 (328)
Q Consensus 176 L~~~did~~~~~i~v~gKg~K~R~Vpi~~~~~~~l~~yl~~~~~~-~~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~ 254 (328)
|+|+|||++.+.+.+.+||+|+|.+|........+..+....... ......+++|+..++.+.+...+.+.++.+++.+
T Consensus 153 L~~~did~~~~~i~~~~K~~k~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (290)
T 1a0p_A 153 LTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLA 232 (290)
T ss_dssp CBGGGEETTTTEEEEECSSSCEEEEECCHHHHHHHHHHHHHTHHHHHTTCCCCBSSBCTTSSBCCHHHHHHHHHHHHHHT
T ss_pred CCHHHCCCCCCEEEECCCCCCEEEECCHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 94999575799898668899401411327777789999985001110134455545333566542378999999999994
Q ss_pred CCC-CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCHHHHH
Q ss_conf 869-99880541799999999848998899998378887897999961989999
Q gi|254780882|r 255 GLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 (328)
Q Consensus 255 gi~-~~~spH~lRHtfAt~ll~~G~~~~~v~~~lGH~s~~tT~~Y~h~~~~~~~ 307 (328)
|+. .++|||+|||||||.|+++|+|+..||++|||+|++||++|+|++.++.+
T Consensus 233 ~~~~~~~s~H~lRht~at~l~~~G~~~~~i~~~lGH~s~~tT~~Y~~~~~~~lr 286 (290)
T 1a0p_A 233 GIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 286 (290)
T ss_dssp TCCGGGCCHHHHHHHHHHHHHHHCSSCGGGSSCC--CCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHH
T ss_conf 578999874517799999999878999999988189988999999878999999