HHsearch results for GI: 254780882 and protein with PDBid: 1ae9_A

>1ae9_A Lambda integrase; DNA recombination, site-specific recombination; 1.90A {Enterobacteria phage lambda} SCOP: d.163.1.1
Probab=99.89  E-value=4.3e-24  Score=168.47  Aligned_cols=166  Identities=18%  Similarity=0.183  Sum_probs=128.2

Q ss_pred             CCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf             11111015678776531013567757753201222100112332222211222223323220332378531000112210
Q gi|254780882|r  127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV  206 (328)
Q Consensus       127 ~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~L~~~did~~~~~i~v~gKg~K~R~Vpi~~~~  206 (328)
                      +.||.||+.++++++....+    +  +  ++++.|++.||||+||+++|+|+||+++...+ +..|+++.+.||+.+..
T Consensus         2 ~~lt~eE~~~l~~~~~~~~~----~--~--~~~~~l~~~TG~R~~E~~~L~~~di~~~~~~~-~~~k~~~~~~~~~~~~~   72 (179)
T 1ae9_A            2 SRLTADEYLKIYQAAESSPC----W--L--RLAMELAVVTGQRVGDLCEMKWSDIVDGYLYV-EQSKTGVKIAIPTALHI   72 (179)
T ss_dssp             CCCCHHHHHHHHHHGGGSCH----H--H--HHHHHHHHHHCCCHHHHHHCBGGGEETTEEEE-ECTTTCCEEEEETTCEE
T ss_pred             CCCCHHHHHHHHHHHHHCCH----H--H--HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE-EECCCCEEEEEECCHHH
T ss_conf             99999999999998756889----9--9--99999999975759999836201033401478-74255303455466889


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC---CCCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf             02343221110012344665543211112211100012356789997686---999880541799999999848998899
Q gi|254780882|r  207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL---PLSTTAHTLRHSFATHLLSNGGDLRSI  283 (328)
Q Consensus       207 ~~~l~~yl~~~~~~~~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~gi---~~~~spH~lRHtfAt~ll~~G~~~~~v  283 (328)
                      ...+..+..............++|.+..|+++........+.++.+.++.   ....++|++||++++ ++++|+|+..|
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~g~~~~~i  151 (179)
T 1ae9_A           73 DALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSAR-LYEKQISDKFA  151 (179)
T ss_dssp             GGGTEEHHHHHHHHHHHTCCSBSSCCTTSCCCCHHHHHHHHHHHHHHHTCCCSSSCCCTTHHHHHHHH-HHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HHHCCCCHHHH
T ss_conf             99999998877531135776411103577754442047899999999852356540148789999999-99959999999


Q ss_pred             HHHHCCCCHHHHHHHHHHC
Q ss_conf             9983788878979999619
Q gi|254780882|r  284 QSILGHFRLSTTQIYTNVN  302 (328)
Q Consensus       284 ~~~lGH~s~~tT~~Y~h~~  302 (328)
                      |++|||+|++||++|.+..
T Consensus       152 ~~~~GH~s~~~t~~Y~~~~  170 (179)
T 1ae9_A          152 QHLLGHKSDTMASQFRDDR  170 (179)
T ss_dssp             HHHHTC--------CEECS
T ss_pred             HHHHCCCCHHHHHHHHHCC
T ss_conf             9983899999999998566