HHsearch results for GI: 254780882 and protein with PDBid: 1ae9_A
>1ae9_A Lambda integrase; DNA recombination, site-specific recombination; 1.90A {Enterobacteria phage lambda} SCOP: d.163.1.1
Probab=99.89 E-value=4.3e-24 Score=168.47 Aligned_cols=166 Identities=18% Similarity=0.183 Sum_probs=128.2
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 11111015678776531013567757753201222100112332222211222223323220332378531000112210
Q gi|254780882|r 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 (328)
Q Consensus 127 ~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~L~~~did~~~~~i~v~gKg~K~R~Vpi~~~~ 206 (328)
+.||.||+.++++++....+ + + ++++.|++.||||+||+++|+|+||+++...+ +..|+++.+.||+.+..
T Consensus 2 ~~lt~eE~~~l~~~~~~~~~----~--~--~~~~~l~~~TG~R~~E~~~L~~~di~~~~~~~-~~~k~~~~~~~~~~~~~ 72 (179)
T 1ae9_A 2 SRLTADEYLKIYQAAESSPC----W--L--RLAMELAVVTGQRVGDLCEMKWSDIVDGYLYV-EQSKTGVKIAIPTALHI 72 (179)
T ss_dssp CCCCHHHHHHHHHHGGGSCH----H--H--HHHHHHHHHHCCCHHHHHHCBGGGEETTEEEE-ECTTTCCEEEEETTCEE
T ss_pred CCCCHHHHHHHHHHHHHCCH----H--H--HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE-EECCCCEEEEEECCHHH
T ss_conf 99999999999998756889----9--9--99999999975759999836201033401478-74255303455466889
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC---CCCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 02343221110012344665543211112211100012356789997686---999880541799999999848998899
Q gi|254780882|r 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL---PLSTTAHTLRHSFATHLLSNGGDLRSI 283 (328)
Q Consensus 207 ~~~l~~yl~~~~~~~~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~gi---~~~~spH~lRHtfAt~ll~~G~~~~~v 283 (328)
...+..+..............++|.+..|+++........+.++.+.++. ....++|++||++++ ++++|+|+..|
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~g~~~~~i 151 (179)
T 1ae9_A 73 DALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSAR-LYEKQISDKFA 151 (179)
T ss_dssp GGGTEEHHHHHHHHHHHTCCSBSSCCTTSCCCCHHHHHHHHHHHHHHHTCCCSSSCCCTTHHHHHHHH-HHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HHHCCCCHHHH
T ss_conf 99999998877531135776411103577754442047899999999852356540148789999999-99959999999
Q ss_pred HHHHCCCCHHHHHHHHHHC
Q ss_conf 9983788878979999619
Q gi|254780882|r 284 QSILGHFRLSTTQIYTNVN 302 (328)
Q Consensus 284 ~~~lGH~s~~tT~~Y~h~~ 302 (328)
|++|||+|++||++|.+..
T Consensus 152 ~~~~GH~s~~~t~~Y~~~~ 170 (179)
T 1ae9_A 152 QHLLGHKSDTMASQFRDDR 170 (179)
T ss_dssp HHHHTC--------CEECS
T ss_pred HHHHCCCCHHHHHHHHHCC
T ss_conf 9983899999999998566