HHsearch results for GI: 254780882 and protein with PDBid: 2a3v_A

>2a3v_A Site-specific recombinase INTI4; protein-DNA complex, recombination; HET: DNA; 2.80A {Vibrio cholerae o1 biovar eltor str}
Probab=100.00  E-value=0  Score=312.72  Aligned_cols=272  Identities=29%  Similarity=0.409  Sum_probs=215.6

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHH-HHHHHHHH
Q ss_conf             89999999999999986254889999999999999999985121478878968989999999999998612-10133211
Q gi|254780882|r   12 FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKR   90 (328)
Q Consensus        12 ~~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~-~s~~T~~~   90 (328)
                      .++++.+++||..    |++|++|+++|..++++|+.|++.        ..+.+++..+|..|+.++..++ .++++.++
T Consensus         3 ~~fl~~~~~yl~~----r~~s~~T~~~Y~~~l~~f~~~~~~--------~~~~~i~~~~i~~~~~~l~~~~~~s~~~~~~   70 (320)
T 2a3v_A            3 SQFLLSVREFMQT----RYYAKKTIEAYLHWITRYIHFHNK--------KHPSLMGDKEVEEFLTYLAVQGKVATKTQSL   70 (320)
T ss_dssp             HHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHHTTSSS--------CCGGGCCHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHHHHCC--------CCHHHCCHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf             8999999999998----596899999999999999999722--------7932399999999999999848956999999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf             23444222233321012322222222222222121111111015678776531013567757753201222100112332
Q gi|254780882|r   91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI  170 (328)
Q Consensus        91 ~ls~lr~f~~~~~~~~~i~~np~~~i~~~k~~~~~p~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~  170 (328)
                      .+++++.++.|+...+....++   +..||.+++.|++++.+|...+....           ..++++++.+++.||+|+
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~---~~~~k~~k~~~~~l~~~e~~~~~~~~-----------~~~~~~~~~ll~~tG~R~  136 (320)
T 2a3v_A           71 ALNSLSFLYKEILKTPLSLEIR---FQRSQLERKLPVVLTRDEIRRLLEIV-----------DPKHQLPIKLLYGSGLRL  136 (320)
T ss_dssp             HHHHHHHHHHHTSSCCCCTTCC---CCCCCCCCCCCCCCCHHHHHHHTTSS-----------CHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHHHHHCCCCCCC---CCCCCCCCCCCCCCCHHHHHHHHHCC-----------CHHHHHHHHHHHHHCCCH
T ss_conf             9999999998866403573356---76678788899767899999998556-----------817899999999828737


Q ss_pred             CCCCCCCCCCCCCCCCCEEE-CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC----C----------------------C
Q ss_conf             22221122222332322033-2378531000112210023432211100123----4----------------------4
Q gi|254780882|r  171 SEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDL----N----------------------L  223 (328)
Q Consensus       171 ~El~~L~~~did~~~~~i~v-~gKg~K~R~Vpi~~~~~~~l~~yl~~~~~~~----~----------------------~  223 (328)
                      +|+++|+|+|++++.+.+.+ .+||+++|.+|++..+.+.+.+|+...+...    .                      .
T Consensus       137 ~E~~~l~~~d~~~~~~~i~~~~~k~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (320)
T 2a3v_A          137 MECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYE  216 (320)
T ss_dssp             HHHHTCBGGGEETTTTEEEEEEETTTEEEEEECCGGGHHHHHHHHHHHHHHHHHHTSCTTBCCSCCSTTCTTTSTTGGGC
T ss_pred             HHHHHHHHHHHHCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHH
T ss_conf             88888787751033323036636787013872659999999999998565432233211344212037776645353010


Q ss_pred             CCCCCCCCC-----------CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCH
Q ss_conf             665543211-----------112211100012356789997686999880541799999999848998899998378887
Q gi|254780882|r  224 NIQLPLFRG-----------IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL  292 (328)
Q Consensus       224 ~~~~~lF~~-----------~~g~~ls~~~i~~~~~~~~~~~gi~~~~spH~lRHtfAt~ll~~G~~~~~v~~~lGH~s~  292 (328)
                      ....++|.+           ..|.+++...++..++++++++|++.++|||+|||||||+|+++|+|+..||++|||+|+
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~s~H~lRHtfaT~ll~~g~~l~~vq~~lGHss~  296 (320)
T 2a3v_A          217 FRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDV  296 (320)
T ss_dssp             GGGSBSSBCSSCEEETTTTEEECCBCCHHHHHHHHHHHHHTTCCCSCCCHHHHHHHHHHHHHHTTCCHHHHHHHHTCSSH
T ss_pred             CCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCH
T ss_conf             13310024555555543233235646589999999999998599999888777899999999878999999988389988


Q ss_pred             HHHHHHHHHCHHHHHHH
Q ss_conf             89799996198999999
Q gi|254780882|r  293 STTQIYTNVNSKNGGDW  309 (328)
Q Consensus       293 ~tT~~Y~h~~~~~~~~~  309 (328)
                      +||++|+|+.++..+++
T Consensus       297 ~tT~~Y~hl~~~~~~~~  313 (320)
T 2a3v_A          297 KTTQIYTHVLDRGASGV  313 (320)
T ss_dssp             HHHGGGCC------CCC
T ss_pred             HHHHHHHCCCHHHHHHH
T ss_conf             99999982799789999