HHsearch results for GI: 254780882 and protein with PDBid: 2a3v_A
>2a3v_A Site-specific recombinase INTI4; protein-DNA complex, recombination; HET: DNA; 2.80A {Vibrio cholerae o1 biovar eltor str}
Probab=100.00 E-value=0 Score=312.72 Aligned_cols=272 Identities=29% Similarity=0.409 Sum_probs=215.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHH-HHHHHHHH
Q ss_conf 89999999999999986254889999999999999999985121478878968989999999999998612-10133211
Q gi|254780882|r 12 FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKR 90 (328)
Q Consensus 12 ~~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~-~s~~T~~~ 90 (328)
.++++.+++||.. |++|++|+++|..++++|+.|++. ..+.+++..+|..|+.++..++ .++++.++
T Consensus 3 ~~fl~~~~~yl~~----r~~s~~T~~~Y~~~l~~f~~~~~~--------~~~~~i~~~~i~~~~~~l~~~~~~s~~~~~~ 70 (320)
T 2a3v_A 3 SQFLLSVREFMQT----RYYAKKTIEAYLHWITRYIHFHNK--------KHPSLMGDKEVEEFLTYLAVQGKVATKTQSL 70 (320)
T ss_dssp HHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHHTTSSS--------CCGGGCCHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHHHHCC--------CCHHHCCHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 8999999999998----596899999999999999999722--------7932399999999999999848956999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 23444222233321012322222222222222121111111015678776531013567757753201222100112332
Q gi|254780882|r 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170 (328)
Q Consensus 91 ~ls~lr~f~~~~~~~~~i~~np~~~i~~~k~~~~~p~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~ 170 (328)
.+++++.++.|+...+....++ +..||.+++.|++++.+|...+.... ..++++++.+++.||+|+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~---~~~~k~~k~~~~~l~~~e~~~~~~~~-----------~~~~~~~~~ll~~tG~R~ 136 (320)
T 2a3v_A 71 ALNSLSFLYKEILKTPLSLEIR---FQRSQLERKLPVVLTRDEIRRLLEIV-----------DPKHQLPIKLLYGSGLRL 136 (320)
T ss_dssp HHHHHHHHHHHTSSCCCCTTCC---CCCCCCCCCCCCCCCHHHHHHHTTSS-----------CHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHCCCCCCC---CCCCCCCCCCCCCCCHHHHHHHHHCC-----------CHHHHHHHHHHHHHCCCH
T ss_conf 9999999998866403573356---76678788899767899999998556-----------817899999999828737
Q ss_pred CCCCCCCCCCCCCCCCCEEE-CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC----C----------------------C
Q ss_conf 22221122222332322033-2378531000112210023432211100123----4----------------------4
Q gi|254780882|r 171 SEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDL----N----------------------L 223 (328)
Q Consensus 171 ~El~~L~~~did~~~~~i~v-~gKg~K~R~Vpi~~~~~~~l~~yl~~~~~~~----~----------------------~ 223 (328)
+|+++|+|+|++++.+.+.+ .+||+++|.+|++..+.+.+.+|+...+... . .
T Consensus 137 ~E~~~l~~~d~~~~~~~i~~~~~k~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (320)
T 2a3v_A 137 MECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYE 216 (320)
T ss_dssp HHHHTCBGGGEETTTTEEEEEEETTTEEEEEECCGGGHHHHHHHHHHHHHHHHHHTSCTTBCCSCCSTTCTTTSTTGGGC
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHH
T ss_conf 88888787751033323036636787013872659999999999998565432233211344212037776645353010
Q ss_pred CCCCCCCCC-----------CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCH
Q ss_conf 665543211-----------112211100012356789997686999880541799999999848998899998378887
Q gi|254780882|r 224 NIQLPLFRG-----------IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 (328)
Q Consensus 224 ~~~~~lF~~-----------~~g~~ls~~~i~~~~~~~~~~~gi~~~~spH~lRHtfAt~ll~~G~~~~~v~~~lGH~s~ 292 (328)
....++|.+ ..|.+++...++..++++++++|++.++|||+|||||||+|+++|+|+..||++|||+|+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~s~H~lRHtfaT~ll~~g~~l~~vq~~lGHss~ 296 (320)
T 2a3v_A 217 FRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDV 296 (320)
T ss_dssp GGGSBSSBCSSCEEETTTTEEECCBCCHHHHHHHHHHHHHTTCCCSCCCHHHHHHHHHHHHHHTTCCHHHHHHHHTCSSH
T ss_pred CCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCH
T ss_conf 13310024555555543233235646589999999999998599999888777899999999878999999988389988
Q ss_pred HHHHHHHHHCHHHHHHH
Q ss_conf 89799996198999999
Q gi|254780882|r 293 STTQIYTNVNSKNGGDW 309 (328)
Q Consensus 293 ~tT~~Y~h~~~~~~~~~ 309 (328)
+||++|+|+.++..+++
T Consensus 297 ~tT~~Y~hl~~~~~~~~ 313 (320)
T 2a3v_A 297 KTTQIYTHVLDRGASGV 313 (320)
T ss_dssp HHHGGGCC------CCC
T ss_pred HHHHHHHCCCHHHHHHH
T ss_conf 99999982799789999