HHsearch results for GI: 254780882 and protein with PDBid: 2kd1_A
>2kd1_A DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579}
Probab=99.38 E-value=9.8e-13 Score=97.51 Aligned_cols=107 Identities=8% Similarity=0.120 Sum_probs=90.7
Q ss_pred HCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 14989999999999999986254889999999999999999985121478878968989999999999998612101332
Q gi|254780882|r 9 IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 (328)
Q Consensus 9 ~~~~~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~ 88 (328)
+.+.++.+.++.|++... .+++++|+++|+..++.++... ++...+.+++..++..|+..+...++|++|+
T Consensus 3 ps~~Tf~~~~~~w~~~~~--~~~~~~T~~~y~~~~~~~i~~~-------~g~~~l~~i~~~~i~~~~~~~~~~~~s~~t~ 73 (118)
T 2kd1_A 3 PSKLSYGEYLESWFNTKR--HSVGIQTAKVLKGYLNSRIIPS-------LGNIKLAKLTSLHMQNYVNSLRDEGLKRGTI 73 (118)
T ss_dssp CSCSBHHHHHHHHHHHHH--HHHCHHHHHHHHHHHTTTHHHH-------TTSSBGGGCCHHHHHHHHHHHHHHTCCHHHH
T ss_pred CCCCCHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHH-------HCCCCHHHCCHHHHHHHHHHHHCCCCCHHHH
T ss_conf 641589999999999983--7289999999999999999998-------6887699989999999987400011589999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 112344422223332101232222222222222212
Q gi|254780882|r 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 (328)
Q Consensus 89 ~~~ls~lr~f~~~~~~~~~i~~np~~~i~~~k~~~~ 124 (328)
++.++.|+++|+||++.|+++.||+.+++.||..++
T Consensus 74 ~~~~~~l~~~~~~Av~~~~i~~NP~~~ik~pk~~kk 109 (118)
T 2kd1_A 74 EKIIKVIRNSLEHAIDLELITKNVAAKTKLPKADKE 109 (118)
T ss_dssp HHHHHHHHHHHHHHHHTTSCSSCTTTTCCCCSCCCC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCC
T ss_conf 999999999999999886935393630938999986