HHsearch results for GI: 254780882 and protein with PDBid: 2kd1_A

>2kd1_A DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579}
Probab=99.38  E-value=9.8e-13  Score=97.51  Aligned_cols=107  Identities=8%  Similarity=0.120  Sum_probs=90.7

Q ss_pred             HCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             14989999999999999986254889999999999999999985121478878968989999999999998612101332
Q gi|254780882|r    9 IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL   88 (328)
Q Consensus         9 ~~~~~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~   88 (328)
                      +.+.++.+.++.|++...  .+++++|+++|+..++.++...       ++...+.+++..++..|+..+...++|++|+
T Consensus         3 ps~~Tf~~~~~~w~~~~~--~~~~~~T~~~y~~~~~~~i~~~-------~g~~~l~~i~~~~i~~~~~~~~~~~~s~~t~   73 (118)
T 2kd1_A            3 PSKLSYGEYLESWFNTKR--HSVGIQTAKVLKGYLNSRIIPS-------LGNIKLAKLTSLHMQNYVNSLRDEGLKRGTI   73 (118)
T ss_dssp             CSCSBHHHHHHHHHHHHH--HHHCHHHHHHHHHHHTTTHHHH-------TTSSBGGGCCHHHHHHHHHHHHHHTCCHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHH-------HCCCCHHHCCHHHHHHHHHHHHCCCCCHHHH
T ss_conf             641589999999999983--7289999999999999999998-------6887699989999999987400011589999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             112344422223332101232222222222222212
Q gi|254780882|r   89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS  124 (328)
Q Consensus        89 ~~~ls~lr~f~~~~~~~~~i~~np~~~i~~~k~~~~  124 (328)
                      ++.++.|+++|+||++.|+++.||+.+++.||..++
T Consensus        74 ~~~~~~l~~~~~~Av~~~~i~~NP~~~ik~pk~~kk  109 (118)
T 2kd1_A           74 EKIIKVIRNSLEHAIDLELITKNVAAKTKLPKADKE  109 (118)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCSSCTTTTCCCCSCCCC
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCC
T ss_conf             999999999999999886935393630938999986