HHsearch results for GI: 254780882 and protein with PDBid: 2kj9_A
>2kj9_A Integrase; DNA_BRE_C superfamily, INTB, PSI-2, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum}
Probab=98.63 E-value=4.2e-08 Score=68.53 Aligned_cols=97 Identities=12% Similarity=0.092 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98999999999999998625488999999999999999998512147887896898999999999999861210133211
Q gi|254780882|r 11 SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90 (328)
Q Consensus 11 ~~~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~ 90 (328)
..++.+.+++|++. ...+++.|...|.+.++. +..+.++..++.+|+..+|..++..+...| ++.|+++
T Consensus 10 ~~TF~~va~~W~e~---k~~~~~~t~~~~~~~l~~-------~i~P~~G~~~i~~It~~~i~~~l~~i~~~g-~~~ta~r 78 (118)
T 2kj9_A 10 TRAFKTVAKSWFAT---KTTWSEDYQRSVWTRLET-------YLFPDIGNKDIAELDTGDLLVPIKKIEKLG-YLEIAMR 78 (118)
T ss_dssp CSBHHHHHHHHHHT---CCSSCHHHHHHHHHHHHH-------TSSTTGGGSBGGGCCHHHHHHHHHHHHTTT-CHHHHHH
T ss_pred CCCHHHHHHHHHHH---CCCCCHHHHHHHHHHHHH-------HHHHHHCCCCHHHHCHHHHHHHHHHHHHHC-CHHHHHH
T ss_conf 46799999999988---688888799999999997-------888985885699955599999999999935-8899999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 2344422223332101232222222222
Q gi|254780882|r 91 SLSGIKSFLKYLKKRKITTESNILNMRN 118 (328)
Q Consensus 91 ~ls~lr~f~~~~~~~~~i~~np~~~i~~ 118 (328)
.++.|+.+|+||+..|+++.||+.+|+.
T Consensus 79 ~~~~l~~if~~Av~~g~i~~NP~~~i~~ 106 (118)
T 2kj9_A 79 VKQYATAIMRYAVQQKMIRFNPAYDLEG 106 (118)
T ss_dssp HHHHHHHHHHHHHHTTSSSSCHHHHCCS
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 9999999999999878833385888987