HHsearch results for GI: 254780882 and protein with PDBid: 3m4a_A
>3m4a_A Putative type I topoisomerase; type IB, topib, protein-DNA complex, isomerase-DNA complex; HET: DNA; 1.65A {Deinococcus radiodurans} PDB: 2f4q_A*
Probab=97.12 E-value=0.00037 Score=43.95 Aligned_cols=130 Identities=18% Similarity=0.209 Sum_probs=82.1
Q ss_pred CCCCCCCCCCCCCCC-----------CCCCCCCCCCCCCCCEEE--CCCCCCCCCCCCCC-CCHHHHHHHHHHHCCCCCC
Q ss_conf 122210011233222-----------221122222332322033--23785310001122-1002343221110012344
Q gi|254780882|r 158 AILYLLYGCGLRISE-----------ALSLTPQNIMDDQSTLRI--QGKGDKIRIVPLLP-SVRKAILEYYDLCPFDLNL 223 (328)
Q Consensus 158 ~i~~ll~~TGlR~~E-----------l~~L~~~did~~~~~i~v--~gKg~K~R~Vpi~~-~~~~~l~~yl~~~~~~~~~ 223 (328)
+++.|+-.|++|+|- ++.|+.+||.++.+.|.+ .||.|+...+-|.+ .+...|....+ ..
T Consensus 126 ~~v~Lld~~~iRVGne~Y~~en~SyGlTTLr~~HV~i~~~~i~~~F~GK~Gv~~~~~i~d~~l~~~l~~l~~------~~ 199 (346)
T 3m4a_A 126 LMTRLLHVARFRVGSDIYARQHKTYGLSTLRQRHVVVDGNTVTFRFKGKHGVSQHKATSDRTLAANMQKLLD------LP 199 (346)
T ss_dssp HHHHHHHHHCCCCCCHHHHHHHCCCCGGGCBGGGEEEETTEEEEEEECGGGCEEEEEECCHHHHHHHHHHHT------SC
T ss_pred HHHHHHHHHCCCCCCCCCHHHCCCCCEEEEECCCEEEECCEEEEEEECCCCEEEEEEECCHHHHHHHHHHHH------CC
T ss_conf 999999984330688210121498150021003358868969999976887388877468899999999984------57
Q ss_pred CCCCCCCCCCCCC---CCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH-----HCCCC-------------HHH
Q ss_conf 6655432111122---11100012356789997686999880541799999999-----84899-------------889
Q gi|254780882|r 224 NIQLPLFRGIRGK---PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL-----SNGGD-------------LRS 282 (328)
Q Consensus 224 ~~~~~lF~~~~g~---~ls~~~i~~~~~~~~~~~gi~~~~spH~lRHtfAt~ll-----~~G~~-------------~~~ 282 (328)
....++|....|+ +++...++.+++.+. | .+|+-+||--.||.++ +.+.+ +..
T Consensus 200 g~~lf~~~~~~~g~~~~v~s~dVN~YLk~~~---g---~~TaKdFRTw~at~~~~~~L~~~~~~~s~~~~kk~i~~ai~~ 273 (346)
T 3m4a_A 200 GPWLFQTVDAGGGERRRIHSTELNAYLREVI---G---PFTAKDFRTWGGTLLAAEYLAQQGTESSERQAKKVLVDCVKF 273 (346)
T ss_dssp SSBSCEEECCCC-CEEECCHHHHHHHHHHHH---T---TSCHHHHHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHCCCCCCCEECCCHHHHHHHHHHHC---C---CCCHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 8153310015688710167999999999866---9---987313034354999999998367889989999999999999
Q ss_pred HHHHHCCCCHHHH-HHHHH
Q ss_conf 9998378887897-99996
Q gi|254780882|r 283 IQSILGHFRLSTT-QIYTN 300 (328)
Q Consensus 283 v~~~lGH~s~~tT-~~Y~h 300 (328)
|++.||| ..+++ .-|.|
T Consensus 274 VA~~Lgn-TpaVcRksYI~ 291 (346)
T 3m4a_A 274 VADDLGN-TPAVTRGSYIC 291 (346)
T ss_dssp HHHHHTS-CHHHHHHHTSC
T ss_pred HHHHHCC-CHHHHHHHCCC
T ss_conf 9998489-75445564378