Query gi|254780882|ref|YP_003065295.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter asiaticus str. psy62] Match_columns 328 No_of_seqs 176 out of 10042 Neff 8.9 Searched_HMMs 13730 Date Wed Jun 1 10:50:18 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780882.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1a0pa2 d.163.1.1 (A:111-292) 100.0 1.1E-33 8.4E-38 226.8 4.4 176 127-307 1-178 (182) 2 d1aiha_ d.163.1.1 (A:) Integra 100.0 1.2E-30 8.9E-35 207.9 4.7 164 126-322 4-167 (170) 3 d1f44a2 d.163.1.1 (A:130-343) 99.9 7.3E-28 5.3E-32 190.5 6.2 185 125-316 4-212 (214) 4 d1ae9a_ d.163.1.1 (A:) Integra 99.9 1.1E-24 7.8E-29 170.7 4.2 165 127-301 2-169 (179) 5 d1a0pa1 a.60.9.1 (A:3-100) Rec 99.8 6.7E-19 4.9E-23 134.5 7.5 95 16-116 4-98 (98) 6 d1f44a1 a.60.9.1 (A:20-129) Cr 99.4 1.7E-13 1.2E-17 100.8 5.4 84 16-105 3-86 (110) 7 d1a41a_ d.163.1.2 (A:) Eukaryo 96.9 0.0011 8.2E-08 39.4 6.0 122 159-300 40-196 (230) 8 d1k4ta2 d.163.1.2 (A:431-640,A 95.9 0.0048 3.5E-07 35.5 4.6 101 173-290 74-203 (263) 9 d1a0pa1 a.60.9.1 (A:3-100) Rec 92.1 0.043 3.2E-06 29.5 2.7 40 68-107 3-43 (98) 10 d2e1za1 c.55.1.2 (A:4-192) Pro 35.1 11 0.00077 14.6 3.8 24 248-272 158-181 (189) No 1 >d1a0pa2 d.163.1.1 (A:111-292) Recombinase XerD {Escherichia coli [TaxId: 562]} Probab=99.97 E-value=1.1e-33 Score=226.77 Aligned_cols=176 Identities=36% Similarity=0.490 Sum_probs=146.1 Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC Q ss_conf 11111015678776531013567757753201222100112332222211222223323220332378531000112210 Q gi|254780882|r 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 (328) Q Consensus 127 ~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~L~~~did~~~~~i~v~gKg~K~R~Vpi~~~~ 206 (328) +.||.+|+.++++++.. ....++||++||.++++||||++|+++|+|+||+++.+.+.+.+|+.|.|.++..... T Consensus 1 k~Lt~eei~~ll~~~~~-----~~~~~lRd~~l~~l~~~tG~R~~ei~~L~~~~i~~~~~~i~~~~~~~k~r~~~~~~~~ 75 (182) T d1a0pa2 1 KDLSEAQVERLLQAPLI-----DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 75 (182) T ss_dssp CCCCHHHHHHHHHCSCT-----TSHHHHHHHHHHHHHHHHCCCHHHHTTCBGGGEETTTTEEEEECSSSCEEEEECCHHH T ss_pred CCCCHHHHHHHHHCCCC-----CCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCEEEEEECCCCEEEEEEECCHH T ss_conf 98999999999827463-----8818799999999999967764774202141411443289983689801257520013 Q ss_pred HHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHHHCCCCHHHHH Q ss_conf 023432211100123-446655432111122111000123567899976869-998805417999999998489988999 Q gi|254780882|r 207 RKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQ 284 (328) Q Consensus 207 ~~~l~~yl~~~~~~~-~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~gi~-~~~spH~lRHtfAt~ll~~G~~~~~v~ 284 (328) ...+..++....... ......+++++..+.+++.+++++.++++++.+|++ .+++||+|||||||.|+++|+|+.+|+ T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~H~~Rht~at~l~~~G~~~~~I~ 155 (182) T d1a0pa2 76 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQ 155 (182) T ss_dssp HHHHHHHHHHTHHHHHTTCCCCBSSBCTTSSBCCHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHCSSCGGGS T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHH T ss_conf 35566655311230012345654210235773668999999999999849985783614146589996556499999999 Q ss_pred HHHCCCCHHHHHHHHHHCHHHHH Q ss_conf 98378887897999961989999 Q gi|254780882|r 285 SILGHFRLSTTQIYTNVNSKNGG 307 (328) Q Consensus 285 ~~lGH~s~~tT~~Y~h~~~~~~~ 307 (328) ++|||+|++||++|+|++.++.+ T Consensus 156 ~~lGH~s~~tt~~Y~~~~~e~~r 178 (182) T d1a0pa2 156 MLLGHSDLSTTQIYTHVATERLR 178 (182) T ss_dssp SCC--CCCCHHHHHHHHHHHHHH T ss_pred HHHCCCCHHHHHHHHCCCHHHHH T ss_conf 99589988999987687999999 No 2 >d1aiha_ d.163.1.1 (A:) Integrase {Bacteriophage HP1 [TaxId: 10690]} Probab=99.96 E-value=1.2e-30 Score=207.85 Aligned_cols=164 Identities=24% Similarity=0.291 Sum_probs=123.8 Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC Q ss_conf 11111101567877653101356775775320122210011233222221122222332322033237853100011221 Q gi|254780882|r 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 (328) Q Consensus 126 p~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~L~~~did~~~~~i~v~gKg~K~R~Vpi~~~ 205 (328) ..+||.+|+.++++++.....+ ..++++.+++.||||+||+++|+|+||+++.. ..+.+|++++|.|||++. T Consensus 4 ~~~Lt~eEi~~l~~~~~~~~~~-------~~~~~i~l~~~tG~R~~E~~~L~~~dI~~~~~-~~~~~K~~~~r~ipl~~~ 75 (170) T d1aiha_ 4 LAFLYERDIYRLLAECDNSRNP-------DLGLIVRICLATGARWSEAETLTQSQVMPYKI-TFTNTKSKKNRTVPISDE 75 (170) T ss_dssp CCCCCHHHHHHHHHHHTTSSST-------THHHHHHHHHHHCCCHHHHHTCBTTTEETTEE-EEESSSSSCEEEEECCHH T ss_pred CCCCCHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCE-EECCCCCCCHHHHHHHHH T ss_conf 6689999999999986365896-------69999999999777611244433102442110-211444430057766999 Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHH Q ss_conf 00234322111001234466554321111221110001235678999768699988054179999999984899889999 Q gi|254780882|r 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285 (328) Q Consensus 206 ~~~~l~~yl~~~~~~~~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~gi~~~~spH~lRHtfAt~ll~~G~~~~~v~~ 285 (328) +.+.|..+ .+++|... .............+++++++||+|||||||.|+++|+|+.+|++ T Consensus 76 ~~~~l~~~------------~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~H~lRht~at~l~~~g~~~~~i~~ 135 (170) T d1aiha_ 76 LFDMLPKK------------RGRLFNDA--------YESFENAVLRAEIELPKGQLTHVLRHTFASHFMMNGGNILVLKE 135 (170) T ss_dssp HHHHSCCC------------SSBSSCCC--------HHHHHHHHHHTTCCCCTTCTTTHHHHHHHHHHHHTTCCHHHHHH T ss_pred HHHHHHHH------------HCCCCCCC--------HHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHCCCCCHHHHHH T ss_conf 99998751------------00110111--------12443345666502577610111046551455216989999999 Q ss_pred HHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHH Q ss_conf 8378887897999961989999999999998173000 Q gi|254780882|r 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322 (328) Q Consensus 286 ~lGH~s~~tT~~Y~h~~~~~~~~~l~~~~~~~~~~~~ 322 (328) +|||+|++||++|+|+++++. ++++ +.||+.. T Consensus 136 ~lGH~~~~~t~~Y~~~~~~~~----~~a~-~~~p~~~ 167 (170) T d1aiha_ 136 ILGHSTIEMTMRYAHFAPSHL----ESAV-KFNPLSN 167 (170) T ss_dssp HHTCSSHHHHGGGGGGSCCCT----THHH-HHSTTTS T ss_pred HHCCCCHHHHHHHHCCCHHHH----HHHH-HHCCCCC T ss_conf 808999899998876799999----9999-8685768 No 3 >d1f44a2 d.163.1.1 (A:130-343) Cre recombinase {Bacteriophage P1 [TaxId: 10678]} Probab=99.94 E-value=7.3e-28 Score=190.50 Aligned_cols=185 Identities=16% Similarity=0.117 Sum_probs=131.4 Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---EEEC-CC---CCCC Q ss_conf 111111101567877653101356775775320122210011233222221122222332322---0332-37---8531 Q gi|254780882|r 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQ-GK---GDKI 197 (328) Q Consensus 125 ~p~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~L~~~did~~~~~---i~v~-gK---g~K~ 197 (328) .+.+++.+|+..+...+. ......++||++|+.|+|.||||++|+++|+|+||++..+. +.+. +| +.+. T Consensus 4 ~~~~~~~~e~~~~~~~~~----~~~~~~~~R~~ali~l~~~tGlR~~Ei~~L~~~di~~~~~~~~~i~i~~~k~~~~~~~ 79 (214) T d1f44a2 4 QALAFERTDFDQVRSLME----NSDRCQDIRNLAFLGIAYNTLLRIAEIARIRVKDISRTDGGRMLIHIGRTKTLVSTAG 79 (214) T ss_dssp CCCCCCHHHHHHHHHHHT----TCCCHHHHHHHHHHHHHHHHCCCHHHHHHCBGGGEEECGGGCEEEEECC--------C T ss_pred CCCCCCHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEECCCCCCEEEEEEECCCCCCCEE T ss_conf 467799999999999986----2472263899999999999810777787512311202333103666630245643300 Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC---------CCCCCCCCCCHHHHHHHH---HHHC----CC-CCCC Q ss_conf 00011221002343221110012344665543211---------112211100012356789---9976----86-9998 Q gi|254780882|r 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG---------IRGKPLNPGVFQRYIRQL---RRYL----GL-PLST 260 (328) Q Consensus 198 R~Vpi~~~~~~~l~~yl~~~~~~~~~~~~~~lF~~---------~~g~~ls~~~i~~~~~~~---~~~~----gi-~~~~ 260 (328) +.+++++.....+..++..+.... ...+++|.. ..+.+++.+.+...++.. .+.+ |. ..++ T Consensus 80 ~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (214) T d1f44a2 80 VEKALSLGVTKLVERWISVSGVAD--DPNNYLFCRVRKNGVAAPSATSQLSTRALEGIFEATHRLIYGAKDDSGQRYLAW 157 (214) T ss_dssp EEEECCHHHHHHHHHHHHHHCGGG--STTSBSSCCBCTTSCBCCCSSCCCCHHHHHHHHHHHHHHHHCSCCTTCCTTSSC T ss_pred CCCCCCHHHHHHHHHHHHHHCCCC--CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 102453668887754455423332--322133211001244456433334433233332223222222222011356678 Q ss_pred CCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHH Q ss_conf 80541799999999848998899998378887897999961989999999999998 Q gi|254780882|r 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 (328) Q Consensus 261 spH~lRHtfAt~ll~~G~~~~~v~~~lGH~s~~tT~~Y~h~~~~~~~~~l~~~~~~ 316 (328) |||+|||||||.|+++|+|+..||++|||+|++||++|++..++ ...++.++.++ T Consensus 158 t~HslRht~at~l~~~G~~~~~i~~~~GH~s~~~~~~Y~~~~~~-~~~~~~~~l~~ 212 (214) T d1f44a2 158 SGHSARVGAARDMARAGVSIPEIMQAGGWTNVNIVMNFIRNLDS-ETGAMVRLLED 212 (214) T ss_dssp CTTHHHHHHHHHHHHTTCCHHHHHHHHTCCCHHHHHHHTTTCCS-CCCHHHHHHTT T ss_pred CHHHHHCCCCHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHH-HHHHHHHHHHC T ss_conf 66664133002797779999999999689998999998603347-79999998862 No 4 >d1ae9a_ d.163.1.1 (A:) Integrase (Int) {Bacteriophage lambda [TaxId: 10710]} Probab=99.89 E-value=1.1e-24 Score=170.74 Aligned_cols=165 Identities=18% Similarity=0.201 Sum_probs=128.3 Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC Q ss_conf 11111015678776531013567757753201222100112332222211222223323220332378531000112210 Q gi|254780882|r 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 (328) Q Consensus 127 ~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~L~~~did~~~~~i~v~gKg~K~R~Vpi~~~~ 206 (328) +.||.||+.++++++....+ +. ++++.|++.||||++|+++|+|+||+.+...+ ..+|+++.+.+|+.+.. T Consensus 2 ~~lt~ee~~~l~~~~~~~~~----~~----~~~~~l~~~tG~R~~El~~L~~~di~~~~~~i-~~~K~~~~~~~~~~~~~ 72 (179) T d1ae9a_ 2 SRLTADEYLKIYQAAESSPC----WL----RLAMELAVVTGQRVGDLCEMKWSDIVDGYLYV-EQSKTGVKIAIPTALHI 72 (179) T ss_dssp CCCCHHHHHHHHHHGGGSCH----HH----HHHHHHHHHHCCCHHHHHHCBGGGEETTEEEE-ECTTTCCEEEEETTCEE T ss_pred CCCCHHHHHHHHHHHHHCCH----HH----HHHHHHHHHHCCCCCCCCCCCEEEEEECCEEE-EECCCCCCCCCCCCHHH T ss_conf 98999999999998756889----99----99999999967998764666202663011146-41133332346674156 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC---CCCCCCCCHHHHHHHHHHCCCCHHHH Q ss_conf 023432211100123446655432111122111000123567899976869---99880541799999999848998899 Q gi|254780882|r 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP---LSTTAHTLRHSFATHLLSNGGDLRSI 283 (328) Q Consensus 207 ~~~l~~yl~~~~~~~~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~gi~---~~~spH~lRHtfAt~ll~~G~~~~~v 283 (328) ...+..+...............++.+..|.+++...+.+.+....+.++.. ...++|++||+ ||.++++|+|+..| T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~lR~~-~t~~~~~g~~~~~i 151 (179) T d1ae9a_ 73 DALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSL-SARLYEKQISDKFA 151 (179) T ss_dssp GGGTEEHHHHHHHHHHHTCCSBSSCCTTSCCCCHHHHHHHHHHHHHHHTCCCSSSCCCTTHHHHH-HHHHHHHHTCHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHH-HHHHHHCCCCHHHH T ss_conf 77887765544331135776521333047763345303466666531134433231037788888-88999849999999 Q ss_pred HHHHCCCCHHHHHHHHHH Q ss_conf 998378887897999961 Q gi|254780882|r 284 QSILGHFRLSTTQIYTNV 301 (328) Q Consensus 284 ~~~lGH~s~~tT~~Y~h~ 301 (328) |.+|||+|++||++|.+. T Consensus 152 ~~~lGH~s~~~t~~Y~~~ 169 (179) T d1ae9a_ 152 QHLLGHKSDTMASQFRDD 169 (179) T ss_dssp HHHHTC--------CEEC T ss_pred HHHHCCCCHHHHHHHHHC T ss_conf 999589999999998736 No 5 >d1a0pa1 a.60.9.1 (A:3-100) Recombinase XerD {Escherichia coli [TaxId: 562]} Probab=99.76 E-value=6.7e-19 Score=134.51 Aligned_cols=95 Identities=20% Similarity=0.340 Sum_probs=87.5 Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999862548899999999999999999851214788789689899999999999986121013321123444 Q gi|254780882|r 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95 (328) Q Consensus 16 ~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~ls~l 95 (328) +.+++||+++..|||+||+|+++|+.++..|..||.... .++.+++..+|..|+.++.++|++++|+++++++| T Consensus 4 ~~ie~fl~~l~~erg~S~~Ti~aY~~dl~~f~~~l~~~~------~~~~~i~~~~i~~yl~~l~~~g~s~~Ti~r~lsal 77 (98) T d1a0pa1 4 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG------LTLATAQSDDLQALLAERLEGGYKATSSARLLSAV 77 (98) T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHTS------CCTTTCCHHHHHHHHHSCC-------CHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC------CCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH T ss_conf 999999999998849599999999999999999887616------44111558999999999985245510599999999 Q ss_pred HHHHHHHHHHCCCCCCCCCCC Q ss_conf 222233321012322222222 Q gi|254780882|r 96 KSFLKYLKKRKITTESNILNM 116 (328) Q Consensus 96 r~f~~~~~~~~~i~~np~~~i 116 (328) |+||+||..+|+++.||+..| T Consensus 78 r~ff~~l~~~~~i~~nP~~~i 98 (98) T d1a0pa1 78 RRLFQYLYREKFREDDPSAHL 98 (98) T ss_dssp HHHHHHHHHTTSSSSCTTSCC T ss_pred HHHHHHHHHCCCCCCCCCCCC T ss_conf 999999999789376833419 No 6 >d1f44a1 a.60.9.1 (A:20-129) Cre recombinase {Bacteriophage P1 [TaxId: 10678]} Probab=99.39 E-value=1.7e-13 Score=100.82 Aligned_cols=84 Identities=8% Similarity=0.143 Sum_probs=73.9 Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999862548899999999999999999851214788789689899999999999986121013321123444 Q gi|254780882|r 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95 (328) Q Consensus 16 ~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~ls~l 95 (328) ++.++|+++++.++++|+||+++|..||+.|..||..... ++-.++..+|..|+.++...|++++|+++++++| T Consensus 3 ~~~~~~~~~l~~~~~~S~nT~~aY~~dl~~f~~w~~~~~~------~~l~~~~~~v~~yl~~l~~~g~s~sTi~R~lsai 76 (110) T d1f44a1 3 EVRKNLMDMFRDRQAFSEHTWKMLLSVCRSWAAWCKLNNR------KWFPAEPEDVRDYLLYLQARGLAVKTIQQHLGQL 76 (110) T ss_dssp TTHHHHHSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHTTC------CTTTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH T ss_conf 8999999999998653898999999999999998865112------3462345378999999986388840899999999 Q ss_pred HHHHHHHHHH Q ss_conf 2222333210 Q gi|254780882|r 96 KSFLKYLKKR 105 (328) Q Consensus 96 r~f~~~~~~~ 105 (328) ++|++|+... T Consensus 77 r~f~r~~g~~ 86 (110) T d1f44a1 77 NMLHRRSGLP 86 (110) T ss_dssp HHHHHHTTCC T ss_pred HHHHHHCCCC T ss_conf 9999986999 No 7 >d1a41a_ d.163.1.2 (A:) Eukaryotic DNA topoisomerase I, catalytic core {Vaccinia virus [TaxId: 10245]} Probab=96.87 E-value=0.0011 Score=39.40 Aligned_cols=122 Identities=16% Similarity=0.188 Sum_probs=72.7 Q ss_pred CCCCCCCCCCCCCC-----------CCCCCCCCCCCCCCCEEE--CCCCCCCCCCCC--CCCCHHHHHHHHHHHCCCCCC Q ss_conf 22210011233222-----------221122222332322033--237853100011--221002343221110012344 Q gi|254780882|r 159 ILYLLYGCGLRISE-----------ALSLTPQNIMDDQSTLRI--QGKGDKIRIVPL--LPSVRKAILEYYDLCPFDLNL 223 (328) Q Consensus 159 i~~ll~~TGlR~~E-----------l~~L~~~did~~~~~i~v--~gKg~K~R~Vpi--~~~~~~~l~~yl~~~~~~~~~ 223 (328) ++.|+-.|.+|+|- ++.|+.+||....+.+.+ .||+|+++.+-+ .+.+...+....+ .. T Consensus 40 vv~Lld~~~iRvGne~Ya~~n~SyGltTLr~~Hv~i~~~~i~f~F~GKsGv~~~~~i~~d~~l~~~l~~~~~------~~ 113 (230) T d1a41a_ 40 FMLMETMFFIRFGKMKYLKENETVGLLTLKNKHIEISPDEIVIKFVGKDKVSHEFVVHKSNRLYKPLLKLTD------DS 113 (230) T ss_dssp HHHHHHCCC---------CCHHHHHHHTCBGGGEEEETTEEEECEEETTTEEECCEEETTSSSHHHHHHHCC------TT T ss_pred HHHHHHHHCEECCCHHHHHHCCCCCEEEEEHHHEEEECCEEEEEEECCCCCEEEEEEECCHHHHHHHHHHHH------CC T ss_conf 999999736516886567625983512201310677189269987558773489988337899999999986------66 Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH-----H---CCCC-----------HHHHH Q ss_conf 665543211112211100012356789997686999880541799999999-----8---4899-----------88999 Q gi|254780882|r 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL-----S---NGGD-----------LRSIQ 284 (328) Q Consensus 224 ~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~gi~~~~spH~lRHtfAt~ll-----~---~G~~-----------~~~v~ 284 (328) .++.++|. .++...++.+++ .. .+|+.+||-..||.++ . ...+ +..|+ T Consensus 114 ~~~~~lf~-----~v~~~~vn~yl~----~~----~~taKdFRTw~at~~~~~~l~~~~~~~~~~~~~kk~i~~~i~~vA 180 (230) T d1a41a_ 114 SPEEFLFN-----KLSERKVYECIK----QF----GIRIKDLRTYGVNYTFLYNFWTNVKSISPLPSPKKLIALTIKQTA 180 (230) T ss_dssp CTTSBSST-----TCCHHHHHHHHH----HT----TCCHHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHH T ss_pred CCCCCCCC-----CCCCHHHHHHHH----HC----CCCHHHHHHHCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 95200000-----256337788888----73----760999998652899999998506877877788999999999999 Q ss_pred HHHCCCCHHHH-HHHHH Q ss_conf 98378887897-99996 Q gi|254780882|r 285 SILGHFRLSTT-QIYTN 300 (328) Q Consensus 285 ~~lGH~s~~tT-~~Y~h 300 (328) +.|||+ ++++ .-|.| T Consensus 181 ~~LgNT-paV~rksYI~ 196 (230) T d1a41a_ 181 EVVGHT-PSISKRAYMA 196 (230) T ss_dssp HHHSSC-CCHHHHHHHH T ss_pred HHHCCC-HHHHHHHCCC T ss_conf 995897-6667886579 No 8 >d1k4ta2 d.163.1.2 (A:431-640,A:713-765) Eukaryotic DNA topoisomerase I, catalytic core {Human (Homo sapiens) [TaxId: 9606]} Probab=95.91 E-value=0.0048 Score=35.50 Aligned_cols=101 Identities=22% Similarity=0.197 Sum_probs=62.4 Q ss_pred CCCCCCCCCCCC------CCCEEE--CCCCCCC--CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 221122222332------322033--2378531--000112210023432211100123446655432111122111000 Q gi|254780882|r 173 ALSLTPQNIMDD------QSTLRI--QGKGDKI--RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242 (328) Q Consensus 173 l~~L~~~did~~------~~~i~v--~gKg~K~--R~Vpi~~~~~~~l~~yl~~~~~~~~~~~~~~lF~~~~g~~ls~~~ 242 (328) ++.|+.+||.+. .+.|.+ .||.|.. ..|++.+.+...|....+. ..+++.|| .+++... T Consensus 74 ~tTLr~eHv~l~~~~~~~~~~i~~~F~GK~gvr~~~~v~~~~~v~~~l~~~~~~------k~~~d~LF-----~~i~s~~ 142 (263) T d1k4ta2 74 CCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMEN------KQPEDDLF-----DRLNTGI 142 (263) T ss_dssp GGGCBGGGEEEEEEETTEEEEEEEEEECGGGCEEEEEEECCHHHHHHHHHHTTT------CCTTSBSS-----TTCCHHH T ss_pred EEECCHHHEEECCCCCCCCCEEEEEEECCCCEEEEEEEECCHHHHHHHHHHHHC------CCCCHHHC-----CCCCHHH T ss_conf 200222115761465677855899974477638999983588999999999876------69821111-----6688899 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH-----HCCCC--------------HHHHHHHHCCC Q ss_conf 12356789997686999880541799999999-----84899--------------88999983788 Q gi|254780882|r 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL-----SNGGD--------------LRSIQSILGHF 290 (328) Q Consensus 243 i~~~~~~~~~~~gi~~~~spH~lRHtfAt~ll-----~~G~~--------------~~~v~~~lGH~ 290 (328) ++.+ .+.+| ..+|+.+||--.||.++ +.+.+ ...|+-+++|. T Consensus 143 vN~y----Lk~~~--~g~TaKdFRTw~As~~~~~~L~~~~~~~~~~~~k~~~~n~Anr~VA~lcnHq 203 (263) T d1k4ta2 143 LNKH----LQDLM--EGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 203 (263) T ss_dssp HHHH----HHHHS--TTCCTTHHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHTTCB T ss_pred HHHH----HHHHC--CCCCEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCC T ss_conf 9999----99966--9972130213446999999998379998679999999999999999982887 No 9 >d1a0pa1 a.60.9.1 (A:3-100) Recombinase XerD {Escherichia coli [TaxId: 562]} Probab=92.07 E-value=0.043 Score=29.50 Aligned_cols=40 Identities=13% Similarity=0.361 Sum_probs=33.5 Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 999999999998-6121013321123444222233321012 Q gi|254780882|r 68 YTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKI 107 (328) Q Consensus 68 ~~~i~~~l~~l~-~~~~s~~T~~~~ls~lr~f~~~~~~~~~ 107 (328) ...|..|+.++. ++|+|+.|+..|...|+.|++|+..++. T Consensus 3 ~~~ie~fl~~l~~erg~S~~Ti~aY~~dl~~f~~~l~~~~~ 43 (98) T d1a0pa1 3 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL 43 (98) T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHTSC T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 89999999999988495999999999999999998876164 No 10 >d2e1za1 c.55.1.2 (A:4-192) Propionate kinase {Salmonella typhimurium [TaxId: 90371]} Probab=35.15 E-value=11 Score=14.59 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=19.0 Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHHH Q ss_conf 7899976869998805417999999 Q gi|254780882|r 248 RQLRRYLGLPLSTTAHTLRHSFATH 272 (328) Q Consensus 248 ~~~~~~~gi~~~~spH~lRHtfAt~ 272 (328) ..+.++.|+ .++.+|.+=|-+.+. T Consensus 158 ~~~~~~~gI-RRYGFHGlS~~yva~ 181 (189) T d2e1za1 158 WEYFSSLGV-RRYGFHGTSHRYVSR 181 (189) T ss_dssp HHHHHTTCC-SCCCSCHHHHHHHHH T ss_pred HHHHHHCCC-EEECHHHHHHHHHHH T ss_conf 999986596-062230772999999 Done!