BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780882|ref|YP_003065295.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter asiaticus str. psy62] (328 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780882|ref|YP_003065295.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter asiaticus str. psy62] gi|254040559|gb|ACT57355.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter asiaticus str. psy62] Length = 328 Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/328 (100%), Positives = 328/328 (100%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI Sbjct: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK Sbjct: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN Sbjct: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP Sbjct: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN Sbjct: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 Query: 301 VNSKNGGDWMMEIYDQTHPSITQKDKKN 328 VNSKNGGDWMMEIYDQTHPSITQKDKKN Sbjct: 301 VNSKNGGDWMMEIYDQTHPSITQKDKKN 328 >gi|315122698|ref|YP_004063187.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496100|gb|ADR52699.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 324 Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust. Identities = 235/327 (71%), Positives = 279/327 (85%), Gaps = 7/327 (2%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 ME NL EIV+ ELL+ERQNWL +L++E GLSKLTLQSYE D RQFL F+AFYT EKI + Sbjct: 1 MERKNLHEIVTTELLEERQNWLNSLKVEHGLSKLTLQSYERDMRQFLTFMAFYTGEKIDL 60 Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 Q +RQL YT+IRAF+SKRR I +RSL RSLSGI+SFLKYLKKR+IT E+NILNM+NLK Sbjct: 61 QAMRQLLYTDIRAFVSKRRLHGIENRSLTRSLSGIRSFLKYLKKRQITGEANILNMKNLK 120 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 KSNSLP+ L+EKQAL L+ N ++T ++TKWI+ARNSAILYLLYGCGLRISE LSLTPQN Sbjct: 121 KSNSLPKPLSEKQALNLI-NYDINTHNDTKWINARNSAILYLLYGCGLRISETLSLTPQN 179 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240 I+DD+S+LRI GKG+K RIVPLL SVR+ I++YY LCPFD L+I+LPLFRG RGKPLNP Sbjct: 180 IIDDESSLRITGKGNKTRIVPLLSSVREIIMKYYTLCPFD--LHIELPLFRGARGKPLNP 237 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 GVFQRYIR LR+ L LP +TT HTLRHSFATH+LSNGGDLRSIQS+LGH RLS+TQ+YTN Sbjct: 238 GVFQRYIRYLRQNLSLPTTTTPHTLRHSFATHILSNGGDLRSIQSVLGHARLSSTQVYTN 297 Query: 301 VNSKNGGDWMMEIYDQTHPSITQKDKK 327 V+SK ++EIYDQ+HP +T +KK Sbjct: 298 VDSKR----IIEIYDQSHPIVTNNNKK 320 >gi|222150032|ref|YP_002550989.1| site-specific tyrosine recombinase XerC [Agrobacterium vitis S4] gi|221737014|gb|ACM37977.1| site-specific tyrosine recombinase XerC [Agrobacterium vitis S4] Length = 322 Score = 302 bits (773), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 156/321 (48%), Positives = 213/321 (66%), Gaps = 11/321 (3%) Query: 2 EGNNLPE---IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI 58 EG + E I + +L+ ERQNWL +L +R L+ TL +YE DTRQFL FL Y Sbjct: 8 EGPAVTELLLIAAPDLMAERQNWLASLSGQRRLADHTLTAYERDTRQFLGFLTGYFGGPP 67 Query: 59 TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118 +I I+ L +++RAF+S RR + G RSL R L+G++S L+YL+++ + + +R+ Sbjct: 68 SIDDIKALRPSDLRAFLSSRRKEGAGARSLGRHLAGVRSLLRYLERKGLVNAAGAGAIRS 127 Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178 K+ SLP+ L+ QALT+V +E WI AR++A+ LLYGCGLRISEAL LTP Sbjct: 128 PKQPKSLPKPLSAAQALTVVAAET--QLNEEPWIAARDAAVFALLYGCGLRISEALDLTP 185 Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238 +I+ +TLR+ GKG+K R+VPLLP VR+A+ Y LCP+ +L PLFRG RG L Sbjct: 186 ADIVATTTTLRVTGKGNKTRLVPLLPIVRQAVESYQSLCPY--HLPATEPLFRGARGGKL 243 Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 G+ QR +++LR LGLP + T H LRHSFATHLLS GGDLR+IQ +LGH LSTTQIY Sbjct: 244 QQGIIQREMQRLRSALGLPDTATPHALRHSFATHLLSGGGDLRTIQELLGHASLSTTQIY 303 Query: 299 TNVNSKNGGDWMMEIYDQTHP 319 T V+S ++++YD+ HP Sbjct: 304 TGVDSAR----LLDVYDRAHP 320 >gi|190893726|ref|YP_001980268.1| tyrosine site-specific integrase/recombinase [Rhizobium etli CIAT 652] gi|190699005|gb|ACE93090.1| tyrosine site-specific integrase/recombinase protein [Rhizobium etli CIAT 652] Length = 311 Score = 301 bits (772), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 150/316 (47%), Positives = 209/316 (66%), Gaps = 8/316 (2%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 N L I L+ ER WL+NL ER LS+ TL +YE DTRQFL FL + +T+ I Sbjct: 2 NELLVIADPRLMAERAAWLENLARERRLSEHTLDAYERDTRQFLTFLTGHLAGPVTLSDI 61 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 R+L + RAF++ RR Q G RSL R+L+G++S L++L+K+ + + +R+ K+ Sbjct: 62 RELRPADFRAFLAARRKQGSGARSLGRNLAGLRSLLRHLEKKGLVNAAGAAAIRSPKQPK 121 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 SLP+ L++ QA+T+V N H+ WI AR++A++ LLYGCGLRISEAL L P ++ Sbjct: 122 SLPKPLSDTQAITVVSNEA--QLHDEPWIAARDAAVMTLLYGCGLRISEALDLVPADLPK 179 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 +TLRI GKG+K R+VPLLP V +A+ +Y LCP+ +L PLFRG RG L + Sbjct: 180 GATTLRITGKGNKTRLVPLLPVVFEAVEKYRALCPY--HLENDAPLFRGARGGKLQAAII 237 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 QR +++LR GLP + T H LRHSFATHLL+ GGDLR+IQ +LGH LSTTQ+YT V++ Sbjct: 238 QRAMQKLRSAFGLPETATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDA 297 Query: 304 KNGGDWMMEIYDQTHP 319 ++E+YD+ HP Sbjct: 298 SR----LLEVYDRAHP 309 >gi|86359460|ref|YP_471352.1| site-specific tyrosine recombinase XerC [Rhizobium etli CFN 42] gi|86283562|gb|ABC92625.1| tyrosine site-specific integrase/recombinase protein [Rhizobium etli CFN 42] Length = 311 Score = 301 bits (771), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 153/317 (48%), Positives = 211/317 (66%), Gaps = 10/317 (3%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 N L I L+ ER WL+NL ER LS+ TL +YE DTRQFL FL + T+ I Sbjct: 2 NELLVIADPRLMAERAAWLENLARERRLSEHTLDAYERDTRQFLTFLTGHLAGPATLGDI 61 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 R+L ++RAF++ RR Q G RSL R+L+G++S L++L+K+ + + +R+ K+ Sbjct: 62 RELRPADLRAFLAARRRQGSGARSLGRNLAGLRSLLRHLEKKGLVNAAGAGAIRSPKQPK 121 Query: 124 SLPRALNEKQALTLV-DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 SLP+ L++ QA+T+V D L H+ WI AR++A++ LLYGCGLRISEAL+L P ++ Sbjct: 122 SLPKPLSDTQAITIVSDEAQL---HDEPWIAARDAAVMTLLYGCGLRISEALNLVPADLP 178 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242 +TLRI GKG+K R+VPLLP V A+ +Y LCP+DL PLFRG RG L + Sbjct: 179 KGATTLRITGKGNKTRLVPLLPVVFDAVEKYRALCPYDLESGE--PLFRGARGGKLQAAI 236 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 QR +++LR LGLP + T H LRHSFATHLL+ GGDLR+IQ +LGH LSTTQ+YT V+ Sbjct: 237 IQRAMQKLRGALGLPETATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVD 296 Query: 303 SKNGGDWMMEIYDQTHP 319 + ++E+YD+ HP Sbjct: 297 ASR----LLEVYDRAHP 309 >gi|241206644|ref|YP_002977740.1| site-specific tyrosine recombinase XerC [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860534|gb|ACS58201.1| integrase family protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 311 Score = 298 bits (764), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 149/317 (47%), Positives = 210/317 (66%), Gaps = 10/317 (3%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 N L I L+ ER WL+NL ER LS+ TL +YE DTRQFL FL + +T+ I Sbjct: 2 NELLVIADPRLMTERAAWLENLASERRLSEHTLDAYERDTRQFLTFLTGHLAGPVTLGDI 61 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 R+L + RAF++ RR Q G RSL R+L+G++S L++L+K+ + + +R+ K+ Sbjct: 62 RELRSADFRAFLAARRKQGSGARSLGRNLAGLRSLLRHLEKKGLVNAAGAAAVRSPKQPK 121 Query: 124 SLPRALNEKQALTLV-DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 SLP+ L++ QA+T+V D+ L H+ WI AR++A++ LLYGCGLRISEAL LTP ++ Sbjct: 122 SLPKPLSDTQAITVVSDDAQL---HDEPWIAARDAAVMTLLYGCGLRISEALDLTPADLQ 178 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242 +TLRI GKG+K R+VPLL + A+ +Y LCP+ +L PLFRG RG L + Sbjct: 179 KGATTLRITGKGNKTRLVPLLSVIFDAVEKYRTLCPY--HLEAGEPLFRGARGGKLQAAI 236 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 QR ++++R GLP + T H LRHSFATHLL+ GGDLR+IQ +LGH LSTTQ+YT V+ Sbjct: 237 IQRTMQKMRSAFGLPETATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVD 296 Query: 303 SKNGGDWMMEIYDQTHP 319 + ++E+YD+ HP Sbjct: 297 ASR----LLEVYDRAHP 309 >gi|209551233|ref|YP_002283150.1| site-specific tyrosine recombinase XerC [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536989|gb|ACI56924.1| tyrosine recombinase XerC [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 311 Score = 298 bits (763), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 151/316 (47%), Positives = 206/316 (65%), Gaps = 8/316 (2%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 N L I L+ ER WL+NL ER LS+ TL +YE DTRQFL FL + T+ I Sbjct: 2 NELLVIADPRLMAERAAWLENLARERRLSEHTLDAYERDTRQFLTFLTGHLAGPATLGDI 61 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 R+L + RAF++ RR Q G RSL R+L+G++S L+YL+K+ + + +R+ K+ Sbjct: 62 RELRPADFRAFLAARRKQGSGARSLGRNLAGLRSLLRYLEKKGLVNAAGAGAIRSPKQPK 121 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 SLP+ L++ QA+T+V N H+ WI AR++A++ LLYGCGLRISEAL L P ++ Sbjct: 122 SLPKPLSDTQAITVVSNEA--QLHDEPWIAARDAAVMTLLYGCGLRISEALDLIPSDLKK 179 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 +TLRI GKG+K R+VPLL V A+ +Y LCP+DL PLFRG RG L + Sbjct: 180 GATTLRITGKGNKTRLVPLLSVVFDAVEKYRTLCPYDLEPGE--PLFRGARGGKLQAAII 237 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 QR +++LR GLP + T H LRHSFATHLL+ GGDLR+IQ +LGH LSTTQ+YT V++ Sbjct: 238 QRAMQKLRSAFGLPETATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDA 297 Query: 304 KNGGDWMMEIYDQTHP 319 ++E+YD+ HP Sbjct: 298 SR----LLEVYDRAHP 309 >gi|222087447|ref|YP_002545984.1| tyrosine recombinase XerC [Agrobacterium radiobacter K84] gi|221724895|gb|ACM28051.1| tyrosine recombinase XerC [Agrobacterium radiobacter K84] Length = 311 Score = 298 bits (763), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 152/317 (47%), Positives = 207/317 (65%), Gaps = 10/317 (3%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 N L I +L+ ER WL+ L ER LS TL +YE DTRQFL FL + +I I Sbjct: 2 NELLIIADPKLMDERSRWLEVLGQERRLSAHTLDAYERDTRQFLTFLTGHLGGPASINDI 61 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 + L + R F++ RR G RSL R+L+G++S L+YL+K+ + + +R+ K+ Sbjct: 62 QALRPADFRGFLAARRKDGAGARSLGRNLAGLRSLLRYLEKKGLVNAAGAGAVRSPKQPK 121 Query: 124 SLPRALNEKQALTLV-DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 SLP+ L++ QA+T+V D LH E WI AR++A+L LLYGCGLRISEAL LTP +I Sbjct: 122 SLPKPLSDTQAITVVSDEAQLH---EEPWIAARDAAVLTLLYGCGLRISEALDLTPDDIR 178 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242 + LRI GKG+K R+VPLLP V +A+ Y +CP+ +L+ PLFRG RG L+PG+ Sbjct: 179 PGATALRITGKGNKTRLVPLLPVVAEAVERYRAICPY--HLDAGSPLFRGARGGKLHPGI 236 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 QR +++LR GLP + T H LRHSFATHLL+ GGDLR+IQ +LGH LSTTQ+YT V+ Sbjct: 237 IQRGMQKLRSAFGLPDTATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVD 296 Query: 303 SKNGGDWMMEIYDQTHP 319 ++E+YD+ HP Sbjct: 297 QSR----LLEVYDRAHP 309 >gi|325293997|ref|YP_004279861.1| site-specific tyrosine recombinase XerC [Agrobacterium sp. H13-3] gi|325061850|gb|ADY65541.1| site-specific tyrosine recombinase XerC [Agrobacterium sp. H13-3] Length = 311 Score = 295 bits (754), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 151/315 (47%), Positives = 204/315 (64%), Gaps = 11/315 (3%) Query: 8 EIVSF---ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64 EI++F +LL ERQ+WL + ER L+ T+++YE DTRQFL FL Y + +I I Sbjct: 3 EILTFATPDLLNERQSWLAAIAGERRLADNTVEAYERDTRQFLTFLTGYIGKPASIADIA 62 Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 L ++RAF++ RR + G RSL R L+G++SFL YL+K+++ + MR+ K+ S Sbjct: 63 DLRPVDLRAFLASRRKEGAGARSLGRHLAGLRSFLHYLQKKRLVNAAGATAMRSPKQPKS 122 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 LP+ L ++QAL + +E WI ARN+A+L LLYGCGLRISEAL L P + D Sbjct: 123 LPKPLTDRQALKITTTEA--QLNEEPWIAARNAAVLSLLYGCGLRISEALGLAPADFTPD 180 Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 +LRI GKG+K R+VPLL V +A+ Y LCP+ +L PLF G RG L P + Q Sbjct: 181 ARSLRITGKGNKTRMVPLLAVVTEAVEAYKKLCPY--HLAADQPLFLGARGGKLQPAIIQ 238 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 R +++LR GLP + T H LRHSFATHLL+ GGDLR+IQ +LGH LSTTQIYT V++ Sbjct: 239 REMQKLRGAFGLPENATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQIYTGVDTA 298 Query: 305 NGGDWMMEIYDQTHP 319 ++EIYD HP Sbjct: 299 R----LLEIYDNAHP 309 >gi|116254158|ref|YP_769996.1| site-specific tyrosine recombinase XerC [Rhizobium leguminosarum bv. viciae 3841] gi|115258806|emb|CAK09912.1| putative tyrosine recombinase [Rhizobium leguminosarum bv. viciae 3841] Length = 299 Score = 293 bits (750), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 146/306 (47%), Positives = 205/306 (66%), Gaps = 10/306 (3%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 + ER WL+NL ER LS+ TL +YE DTRQFL FL + T++ IR+L + RAF Sbjct: 1 MAERAAWLENLARERRLSEHTLDAYERDTRQFLTFLTGHLAGPATLRDIRELRPADFRAF 60 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 ++ RR Q G RSL R+L+G++S L++L+K+ + + +R+ K+ SLP+ L++ QA Sbjct: 61 LAARRKQGSGARSLGRNLAGLRSLLRHLEKKGLVNAAGAAAVRSPKQPKSLPKPLSDTQA 120 Query: 135 LTLV-DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 +T+V D L H+ WI AR++A++ LLYGCGLRISEAL LTP ++ +TLRI GK Sbjct: 121 ITVVSDEAQL---HDEPWIAARDAAVMTLLYGCGLRISEALDLTPADLQKGATTLRITGK 177 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 G+K R+VPLL V A+ +Y LCP+ +L PLFRG RG L + QR ++++R Sbjct: 178 GNKTRLVPLLSVVFDAVEKYRALCPY--HLESGEPLFRGARGGKLQAAIIQRTMQKMRSA 235 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 GLP + T H LRHSFATHLL+ GGDLR+IQ +LGH LSTTQ+YT V++ ++E+ Sbjct: 236 FGLPETATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDASR----LLEV 291 Query: 314 YDQTHP 319 YD+ HP Sbjct: 292 YDRAHP 297 >gi|150398130|ref|YP_001328597.1| site-specific tyrosine recombinase XerC [Sinorhizobium medicae WSM419] gi|150029645|gb|ABR61762.1| phage integrase family protein [Sinorhizobium medicae WSM419] Length = 313 Score = 286 bits (732), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 147/318 (46%), Positives = 204/318 (64%), Gaps = 12/318 (3%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 N L I E++ ER+ WL +L ER LS T+++YE DTRQFL FL + + I Sbjct: 4 NELLIIGHPEVMAERKRWLASLAEERRLSGKTVEAYERDTRQFLTFLTGHLAGPPRLSDI 63 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 R L ++R F+++RR G R+L R L+G++SFL+YL+K + + +R+ K+ Sbjct: 64 RALRPADLRGFLAQRRKGGAGARTLGRGLAGLRSFLRYLEKNGLANAAGAGAVRSPKQPK 123 Query: 124 SLPRALNEKQALTLV--DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 SLP+ L ++ AL +V D+ L E WI ARN+A+L LLYGCGLRI+EAL LTP + Sbjct: 124 SLPKPLTDRDALKVVTTDSQLA----EEPWIAARNAAVLTLLYGCGLRIAEALDLTPADF 179 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241 + +LR+ GKG K RIVPL+ + +A+ Y LCP+ ++ P+FRG RG L P Sbjct: 180 TETARSLRVTGKGGKTRIVPLIAAAAEAVTTYRKLCPY--HIEAGEPIFRGARGAKLQPA 237 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + QR +++LR LGLP S T H LRHSFATHLL+ GGDLR+IQ +LGH LSTTQ+YT V Sbjct: 238 IIQREMQKLRSALGLPDSATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGV 297 Query: 302 NSKNGGDWMMEIYDQTHP 319 +S ++EIYD+ HP Sbjct: 298 DSAR----LLEIYDRAHP 311 >gi|15889883|ref|NP_355564.1| site-specific tyrosine recombinase XerC [Agrobacterium tumefaciens str. C58] gi|34222928|sp|Q8UC70|XERC_AGRT5 RecName: Full=Tyrosine recombinase xerC gi|15157830|gb|AAK88349.1| site-specific recombinase [Agrobacterium tumefaciens str. C58] Length = 315 Score = 285 bits (730), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 151/317 (47%), Positives = 202/317 (63%), Gaps = 15/317 (4%) Query: 8 EIVSF---ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64 EI++F +LL ERQ+WL L ER L+ T+++YE DTRQFL FL Y I+ I Sbjct: 7 EILTFAEPDLLNERQSWLATLAGERRLADNTVEAYERDTRQFLRFLTGYIGRPAAIRDIA 66 Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 L ++RAF++ RR + G RSL R L+G++S L +L+K+ + + MR K+ S Sbjct: 67 DLRPVDLRAFLANRRKEGAGARSLGRHLAGLRSLLHHLQKKGLVNAAGATAMRAPKQPKS 126 Query: 125 LPRALNEKQAL--TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 LP+ L ++QAL T + L +E WI ARN+A+L LLYGCGLRISEAL LTP + Sbjct: 127 LPKPLTDRQALKITTAEAQL----NEEPWIAARNAAVLSLLYGCGLRISEALGLTPADFP 182 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242 +LRI GKG+K RIVPLL V +A+ Y LCP+ L + P+F G RG L P + Sbjct: 183 PGTRSLRITGKGNKTRIVPLLAVVTEAVDTYRKLCPYALAADE--PMFLGARGGKLQPAI 240 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 QR +++LR GLP + T H LRHSFATHLL+ GGDLR+IQ +LGH LSTTQ+YT V+ Sbjct: 241 IQREMQKLRGAFGLPENATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVD 300 Query: 303 SKNGGDWMMEIYDQTHP 319 + ++EIYD HP Sbjct: 301 TAR----LLEIYDNAHP 313 >gi|34222987|sp|Q92LK1|XERC_RHIME RecName: Full=Tyrosine recombinase xerC Length = 318 Score = 284 bits (726), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 145/318 (45%), Positives = 205/318 (64%), Gaps = 12/318 (3%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 N L I E++ ER+ WL +L ER LS+ T+ +YE DTRQFL FL + + I Sbjct: 9 NELLAIGHPEVMAERRRWLASLAEERRLSEKTVDAYERDTRQFLTFLTGHLAGPPRLSDI 68 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 L ++R F+++RR G R+L R L+G++SFL+YL++ + + +R+ K+ Sbjct: 69 CALRPADLRGFLAQRRKGGAGARTLGRGLAGLRSFLRYLERNGLANAAGAGAVRSPKQPK 128 Query: 124 SLPRALNEKQALTLV--DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 SLP+AL +++AL +V D L E WI ARN+A+L LLYGCGLRI+EAL LTP + Sbjct: 129 SLPKALTDREALKVVTADAQLA----EEPWIAARNAAVLTLLYGCGLRIAEALDLTPADF 184 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241 ++LR+ GKG K RIVP++ + +A+ Y LCP+ ++ + P+FRG RG L P Sbjct: 185 SGPVTSLRVTGKGGKTRIVPMIAAAAEAVETYRKLCPY--HIEPEEPIFRGARGAKLQPA 242 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + QR +++LR LGLP S T H LRHSFATHLL+ GGDLR+IQ +LGH LSTTQ+YT V Sbjct: 243 IIQREMQKLRAALGLPDSATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGV 302 Query: 302 NSKNGGDWMMEIYDQTHP 319 +S ++EIYD+ HP Sbjct: 303 DSAR----LLEIYDRAHP 316 >gi|227823634|ref|YP_002827607.1| site-specific tyrosine recombinase XerC [Sinorhizobium fredii NGR234] gi|227342636|gb|ACP26854.1| tyrosine recombinase XerC [Sinorhizobium fredii NGR234] Length = 310 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 149/318 (46%), Positives = 202/318 (63%), Gaps = 13/318 (4%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 N L I E++ ER WL +L ER LS+ T+++YE DTRQFL FL + + I Sbjct: 2 NELLVIGHPEVMAERHRWLASLAEERRLSEKTIEAYERDTRQFLTFLTGHLAGPPRLADI 61 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 R L ++R F+++RR G R+L R L+G++SFL+YL+K + + +R+ K+ Sbjct: 62 RTLRPADLRGFLAQRRKAGAGARTLGRGLAGLRSFLRYLEKHGLANAAGAGAVRSPKQPK 121 Query: 124 SLPRALNEKQALTLV--DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 SLP+ L ++ AL +V D L E WI ARN+A+L LLYGCGLRISEAL LTP + Sbjct: 122 SLPKPLTDRDALEVVTADAQLA----EEPWIAARNAAVLTLLYGCGLRISEALDLTPDD- 176 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241 ++LRI GKG K RIVPL+ + A+ Y LCP+ ++ P+FRG RG L P Sbjct: 177 FSGAASLRITGKGGKTRIVPLIAAATGAVATYRKLCPY--HIGPGEPIFRGARGAKLQPA 234 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + QR +++LR LGLP S T H LRHSFATHLL+ GGDLR+IQ +LGH LSTTQ+YT V Sbjct: 235 IIQREMQKLRSALGLPDSATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGV 294 Query: 302 NSKNGGDWMMEIYDQTHP 319 +S ++EIYD+ HP Sbjct: 295 DSAR----LLEIYDRAHP 308 >gi|15966799|ref|NP_387152.1| site-specific tyrosine recombinase XerC [Sinorhizobium meliloti 1021] gi|307301627|ref|ZP_07581386.1| integrase family protein [Sinorhizobium meliloti BL225C] gi|15076071|emb|CAC47625.1| Probable integrase/recombinase [Sinorhizobium meliloti 1021] gi|306903325|gb|EFN33914.1| integrase family protein [Sinorhizobium meliloti BL225C] Length = 330 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 145/318 (45%), Positives = 205/318 (64%), Gaps = 12/318 (3%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 N L I E++ ER+ WL +L ER LS+ T+ +YE DTRQFL FL + + I Sbjct: 21 NELLAIGHPEVMAERRRWLASLAEERRLSEKTVDAYERDTRQFLTFLTGHLAGPPRLSDI 80 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 L ++R F+++RR G R+L R L+G++SFL+YL++ + + +R+ K+ Sbjct: 81 CALRPADLRGFLAQRRKGGAGARTLGRGLAGLRSFLRYLERNGLANAAGAGAVRSPKQPK 140 Query: 124 SLPRALNEKQALTLV--DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 SLP+AL +++AL +V D L E WI ARN+A+L LLYGCGLRI+EAL LTP + Sbjct: 141 SLPKALTDREALKVVTADAQLA----EEPWIAARNAAVLTLLYGCGLRIAEALDLTPADF 196 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241 ++LR+ GKG K RIVP++ + +A+ Y LCP+ ++ + P+FRG RG L P Sbjct: 197 SGPVTSLRVTGKGGKTRIVPMIAAAAEAVETYRKLCPY--HIEPEEPIFRGARGAKLQPA 254 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + QR +++LR LGLP S T H LRHSFATHLL+ GGDLR+IQ +LGH LSTTQ+YT V Sbjct: 255 IIQREMQKLRAALGLPDSATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGV 314 Query: 302 NSKNGGDWMMEIYDQTHP 319 +S ++EIYD+ HP Sbjct: 315 DSAR----LLEIYDRAHP 328 >gi|163843939|ref|YP_001628343.1| site-specific tyrosine recombinase XerC [Brucella suis ATCC 23445] gi|163674662|gb|ABY38773.1| tyrosine recombinase XerC [Brucella suis ATCC 23445] Length = 315 Score = 282 bits (722), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 145/310 (46%), Positives = 201/310 (64%), Gaps = 13/310 (4%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L R+ WL++L+ R LS TL +YE DTRQFL FL + E +++ I L ++R Sbjct: 14 DLAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRIADLR 73 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 +F++ RR G R+L R L+G++S L++L+KR + + MR ++ SLP+ L Sbjct: 74 SFLANRRNDGAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKPLTAD 133 Query: 133 QALTLV--DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLR 189 A LV D + E WI ARN+A+L LLYGCGLRISEAL L+ + D + ++ Sbjct: 134 DARRLVSADGQMA----EEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARSMT 189 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 I GKG K R+VPLLP+V KA+ +Y LCPFDL+ PLFRG +G PL+ + QR +++ Sbjct: 190 ITGKGSKTRLVPLLPAVHKAVAQYRALCPFDLSAG--QPLFRGAKGGPLHAAIIQREMQK 247 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 LR LGLP S T H LRHSFATHLL GGDLR+IQ +LGH LSTTQ+YT V+++ Sbjct: 248 LRAGLGLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQR---- 303 Query: 310 MMEIYDQTHP 319 ++E+YD+THP Sbjct: 304 LLEVYDKTHP 313 >gi|23502766|ref|NP_698893.1| site-specific tyrosine recombinase XerC [Brucella suis 1330] gi|62290770|ref|YP_222563.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 1 str. 9-941] gi|82700682|ref|YP_415256.1| site-specific tyrosine recombinase XerC [Brucella melitensis biovar Abortus 2308] gi|161619834|ref|YP_001593721.1| site-specific tyrosine recombinase XerC [Brucella canis ATCC 23365] gi|189024985|ref|YP_001935753.1| site-specific tyrosine recombinase XerC [Brucella abortus S19] gi|225853354|ref|YP_002733587.1| site-specific tyrosine recombinase XerC [Brucella melitensis ATCC 23457] gi|254690060|ref|ZP_05153314.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 6 str. 870] gi|254694548|ref|ZP_05156376.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 3 str. Tulya] gi|254696173|ref|ZP_05158001.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 2 str. 86/8/59] gi|254700560|ref|ZP_05162388.1| site-specific tyrosine recombinase XerC [Brucella suis bv. 5 str. 513] gi|254704930|ref|ZP_05166758.1| site-specific tyrosine recombinase XerC [Brucella suis bv. 3 str. 686] gi|254707556|ref|ZP_05169384.1| site-specific tyrosine recombinase XerC [Brucella pinnipedialis M163/99/10] gi|254708907|ref|ZP_05170718.1| site-specific tyrosine recombinase XerC [Brucella pinnipedialis B2/94] gi|254715980|ref|ZP_05177791.1| site-specific tyrosine recombinase XerC [Brucella ceti M13/05/1] gi|254731091|ref|ZP_05189669.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 4 str. 292] gi|256030433|ref|ZP_05444047.1| site-specific tyrosine recombinase XerC [Brucella pinnipedialis M292/94/1] gi|256112250|ref|ZP_05453171.1| site-specific tyrosine recombinase XerC [Brucella melitensis bv. 3 str. Ether] gi|256158417|ref|ZP_05456315.1| site-specific tyrosine recombinase XerC [Brucella ceti M490/95/1] gi|256253837|ref|ZP_05459373.1| site-specific tyrosine recombinase XerC [Brucella ceti B1/94] gi|256258313|ref|ZP_05463849.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 9 str. C68] gi|256263161|ref|ZP_05465693.1| tyrosine recombinase xerC [Brucella melitensis bv. 2 str. 63/9] gi|256370318|ref|YP_003107829.1| tyrosine recombinase [Brucella microti CCM 4915] gi|260169343|ref|ZP_05756154.1| site-specific tyrosine recombinase XerC [Brucella sp. F5/99] gi|260546037|ref|ZP_05821777.1| tyrosine recombinase xerC [Brucella abortus NCTC 8038] gi|260567595|ref|ZP_05838065.1| tyrosine recombinase xerC [Brucella suis bv. 4 str. 40] gi|260755595|ref|ZP_05867943.1| tyrosine recombinase xerC [Brucella abortus bv. 6 str. 870] gi|260758821|ref|ZP_05871169.1| tyrosine recombinase xerC [Brucella abortus bv. 4 str. 292] gi|260760545|ref|ZP_05872888.1| tyrosine recombinase xerC [Brucella abortus bv. 2 str. 86/8/59] gi|260884621|ref|ZP_05896235.1| tyrosine recombinase xerC [Brucella abortus bv. 9 str. C68] gi|261214868|ref|ZP_05929149.1| tyrosine recombinase xerC [Brucella abortus bv. 3 str. Tulya] gi|261217745|ref|ZP_05932026.1| tyrosine recombinase xerC [Brucella ceti M13/05/1] gi|261220972|ref|ZP_05935253.1| tyrosine recombinase xerC [Brucella ceti B1/94] gi|261315040|ref|ZP_05954237.1| tyrosine recombinase xerC [Brucella pinnipedialis M163/99/10] gi|261316403|ref|ZP_05955600.1| tyrosine recombinase xerC [Brucella pinnipedialis B2/94] gi|261751064|ref|ZP_05994773.1| tyrosine recombinase xerC [Brucella suis bv. 5 str. 513] gi|261755626|ref|ZP_05999335.1| tyrosine recombinase xerC [Brucella suis bv. 3 str. 686] gi|261758859|ref|ZP_06002568.1| tyrosine recombinase xerC [Brucella sp. F5/99] gi|265987475|ref|ZP_06100032.1| tyrosine recombinase xerC [Brucella pinnipedialis M292/94/1] gi|265993679|ref|ZP_06106236.1| tyrosine recombinase xerC [Brucella melitensis bv. 3 str. Ether] gi|265996931|ref|ZP_06109488.1| tyrosine recombinase xerC [Brucella ceti M490/95/1] gi|294851157|ref|ZP_06791830.1| tyrosine recombinase XerC [Brucella sp. NVSL 07-0026] gi|297247158|ref|ZP_06930876.1| tyrosine recombinase XerC [Brucella abortus bv. 5 str. B3196] gi|306843367|ref|ZP_07475968.1| tyrosine recombinase XerC [Brucella sp. BO1] gi|34222806|sp|Q7ZAN7|XERC_BRUSU RecName: Full=Tyrosine recombinase xerC gi|23348785|gb|AAN30808.1| integrase/recombinase XerC [Brucella suis 1330] gi|62196902|gb|AAX75202.1| XerC, integrase/recombinase [Brucella abortus bv. 1 str. 9-941] gi|82616783|emb|CAJ11872.1| Phage integrase:Phage integrase, N-terminal SAM-like [Brucella melitensis biovar Abortus 2308] gi|161336645|gb|ABX62950.1| tyrosine recombinase XerC [Brucella canis ATCC 23365] gi|189020557|gb|ACD73279.1| Phage integrase [Brucella abortus S19] gi|225641719|gb|ACO01633.1| tyrosine recombinase XerC [Brucella melitensis ATCC 23457] gi|256000481|gb|ACU48880.1| tyrosine recombinase [Brucella microti CCM 4915] gi|260096144|gb|EEW80020.1| tyrosine recombinase xerC [Brucella abortus NCTC 8038] gi|260157113|gb|EEW92193.1| tyrosine recombinase xerC [Brucella suis bv. 4 str. 40] gi|260669139|gb|EEX56079.1| tyrosine recombinase xerC [Brucella abortus bv. 4 str. 292] gi|260670977|gb|EEX57798.1| tyrosine recombinase xerC [Brucella abortus bv. 2 str. 86/8/59] gi|260675703|gb|EEX62524.1| tyrosine recombinase xerC [Brucella abortus bv. 6 str. 870] gi|260874149|gb|EEX81218.1| tyrosine recombinase xerC [Brucella abortus bv. 9 str. C68] gi|260916475|gb|EEX83336.1| tyrosine recombinase xerC [Brucella abortus bv. 3 str. Tulya] gi|260919556|gb|EEX86209.1| tyrosine recombinase xerC [Brucella ceti B1/94] gi|260922834|gb|EEX89402.1| tyrosine recombinase xerC [Brucella ceti M13/05/1] gi|261295626|gb|EEX99122.1| tyrosine recombinase xerC [Brucella pinnipedialis B2/94] gi|261304066|gb|EEY07563.1| tyrosine recombinase xerC [Brucella pinnipedialis M163/99/10] gi|261738843|gb|EEY26839.1| tyrosine recombinase xerC [Brucella sp. F5/99] gi|261740817|gb|EEY28743.1| tyrosine recombinase xerC [Brucella suis bv. 5 str. 513] gi|261745379|gb|EEY33305.1| tyrosine recombinase xerC [Brucella suis bv. 3 str. 686] gi|262551399|gb|EEZ07389.1| tyrosine recombinase xerC [Brucella ceti M490/95/1] gi|262764660|gb|EEZ10581.1| tyrosine recombinase xerC [Brucella melitensis bv. 3 str. Ether] gi|263093066|gb|EEZ17216.1| tyrosine recombinase xerC [Brucella melitensis bv. 2 str. 63/9] gi|264659672|gb|EEZ29933.1| tyrosine recombinase xerC [Brucella pinnipedialis M292/94/1] gi|294819746|gb|EFG36745.1| tyrosine recombinase XerC [Brucella sp. NVSL 07-0026] gi|297174327|gb|EFH33674.1| tyrosine recombinase XerC [Brucella abortus bv. 5 str. B3196] gi|306276058|gb|EFM57758.1| tyrosine recombinase XerC [Brucella sp. BO1] gi|326409918|gb|ADZ66983.1| Phage integrase [Brucella melitensis M28] gi|326539631|gb|ADZ87846.1| tyrosine recombinase XerC [Brucella melitensis M5-90] Length = 315 Score = 281 bits (719), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 144/310 (46%), Positives = 201/310 (64%), Gaps = 13/310 (4%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L R+ WL++L+ R LS TL +YE DTRQFL FL + E +++ I L ++R Sbjct: 14 DLAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRIADLR 73 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 +F++ RR G R+L R L+G++S L++L+KR + + MR ++ SLP+ L Sbjct: 74 SFLANRRNDGAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKPLTAD 133 Query: 133 QALTLV--DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLR 189 A +V D + E WI ARN+A+L LLYGCGLRISEAL L+ + D + ++ Sbjct: 134 DARRVVSADGQMA----EEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARSMT 189 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 I GKG K R+VPLLP+V KA+ +Y LCPFDL+ PLFRG +G PL+ + QR +++ Sbjct: 190 ITGKGSKTRLVPLLPAVHKAVAQYRALCPFDLSAG--QPLFRGAKGGPLHAAIIQREMQK 247 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 LR LGLP S T H LRHSFATHLL GGDLR+IQ +LGH LSTTQ+YT V+++ Sbjct: 248 LRAGLGLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQR---- 303 Query: 310 MMEIYDQTHP 319 ++E+YD+THP Sbjct: 304 LLEVYDKTHP 313 >gi|225628115|ref|ZP_03786150.1| tyrosine recombinase XerC [Brucella ceti str. Cudo] gi|237816277|ref|ZP_04595270.1| tyrosine recombinase XerC [Brucella abortus str. 2308 A] gi|225616940|gb|EEH13987.1| tyrosine recombinase XerC [Brucella ceti str. Cudo] gi|237788344|gb|EEP62559.1| tyrosine recombinase XerC [Brucella abortus str. 2308 A] Length = 317 Score = 281 bits (719), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 144/310 (46%), Positives = 201/310 (64%), Gaps = 13/310 (4%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L R+ WL++L+ R LS TL +YE DTRQFL FL + E +++ I L ++R Sbjct: 16 DLAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRIADLR 75 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 +F++ RR G R+L R L+G++S L++L+KR + + MR ++ SLP+ L Sbjct: 76 SFLANRRNDGAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKPLTAD 135 Query: 133 QALTLV--DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLR 189 A +V D + E WI ARN+A+L LLYGCGLRISEAL L+ + D + ++ Sbjct: 136 DARRVVSADGQMA----EEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARSMT 191 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 I GKG K R+VPLLP+V KA+ +Y LCPFDL+ PLFRG +G PL+ + QR +++ Sbjct: 192 ITGKGSKTRLVPLLPAVHKAVAQYRALCPFDLSAG--QPLFRGAKGGPLHAAIIQREMQK 249 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 LR LGLP S T H LRHSFATHLL GGDLR+IQ +LGH LSTTQ+YT V+++ Sbjct: 250 LRAGLGLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQR---- 305 Query: 310 MMEIYDQTHP 319 ++E+YD+THP Sbjct: 306 LLEVYDKTHP 315 >gi|307316349|ref|ZP_07595793.1| integrase family protein [Sinorhizobium meliloti AK83] gi|306898189|gb|EFN28931.1| integrase family protein [Sinorhizobium meliloti AK83] Length = 330 Score = 281 bits (719), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 144/318 (45%), Positives = 204/318 (64%), Gaps = 12/318 (3%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 N L I E++ ER+ WL +L ER LS+ T+ +YE DTRQFL FL + + I Sbjct: 21 NELLAIGHPEVMAERRRWLASLAEERRLSEKTVDAYERDTRQFLTFLTGHLAGPPRLSDI 80 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 L ++R F+++RR G R+L R L+G++SFL+YL++ + + +R+ K+ Sbjct: 81 CALRPADLRGFLAQRRKGGAGARTLGRGLAGLRSFLRYLERNGLANAAGAGAVRSPKQPK 140 Query: 124 SLPRALNEKQALTLV--DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 SLP+AL +++AL +V D L E WI ARN+A+L LLYGCGLRI+EAL L P + Sbjct: 141 SLPKALTDREALKVVTADAQLA----EEPWIAARNAAVLTLLYGCGLRIAEALDLIPADF 196 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241 ++LR+ GKG K RIVP++ + +A+ Y LCP+ ++ + P+FRG RG L P Sbjct: 197 SGPVTSLRVTGKGGKTRIVPMIAAAAEAVETYRKLCPY--HIEPEEPIFRGARGAKLQPA 254 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + QR +++LR LGLP S T H LRHSFATHLL+ GGDLR+IQ +LGH LSTTQ+YT V Sbjct: 255 IIQREMQKLRAALGLPDSATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGV 314 Query: 302 NSKNGGDWMMEIYDQTHP 319 +S ++EIYD+ HP Sbjct: 315 DSAR----LLEIYDRAHP 328 >gi|254713666|ref|ZP_05175477.1| site-specific tyrosine recombinase XerC [Brucella ceti M644/93/1] gi|261321407|ref|ZP_05960604.1| tyrosine recombinase xerC [Brucella ceti M644/93/1] gi|261323863|ref|ZP_05963060.1| tyrosine recombinase xerC [Brucella neotomae 5K33] gi|261294097|gb|EEX97593.1| tyrosine recombinase xerC [Brucella ceti M644/93/1] gi|261299843|gb|EEY03340.1| tyrosine recombinase xerC [Brucella neotomae 5K33] Length = 308 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 144/310 (46%), Positives = 201/310 (64%), Gaps = 13/310 (4%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L R+ WL++L+ R LS TL +YE DTRQFL FL + E +++ I L ++R Sbjct: 7 DLAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRIADLR 66 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 +F++ RR G R+L R L+G++S L++L+KR + + MR ++ SLP+ L Sbjct: 67 SFLANRRNDGAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKPLTAD 126 Query: 133 QALTLV--DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLR 189 A +V D + E WI ARN+A+L LLYGCGLRISEAL L+ + D + ++ Sbjct: 127 DARRVVSADGQMA----EEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARSMT 182 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 I GKG K R+VPLLP+V KA+ +Y LCPFDL+ PLFRG +G PL+ + QR +++ Sbjct: 183 ITGKGSKTRLVPLLPAVHKAVAQYRALCPFDLSAG--QPLFRGAKGGPLHAAIIQREMQK 240 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 LR LGLP S T H LRHSFATHLL GGDLR+IQ +LGH LSTTQ+YT V+++ Sbjct: 241 LRAGLGLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQR---- 296 Query: 310 MMEIYDQTHP 319 ++E+YD+THP Sbjct: 297 LLEVYDKTHP 306 >gi|256059893|ref|ZP_05450079.1| site-specific tyrosine recombinase XerC [Brucella neotomae 5K33] Length = 309 Score = 281 bits (718), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 144/310 (46%), Positives = 201/310 (64%), Gaps = 13/310 (4%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L R+ WL++L+ R LS TL +YE DTRQFL FL + E +++ I L ++R Sbjct: 8 DLAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRIADLR 67 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 +F++ RR G R+L R L+G++S L++L+KR + + MR ++ SLP+ L Sbjct: 68 SFLANRRNDGAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKPLTAD 127 Query: 133 QALTLV--DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLR 189 A +V D + E WI ARN+A+L LLYGCGLRISEAL L+ + D + ++ Sbjct: 128 DARRVVSADGQMA----EEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARSMT 183 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 I GKG K R+VPLLP+V KA+ +Y LCPFDL+ PLFRG +G PL+ + QR +++ Sbjct: 184 ITGKGSKTRLVPLLPAVHKAVAQYRALCPFDLSAG--QPLFRGAKGGPLHAAIIQREMQK 241 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 LR LGLP S T H LRHSFATHLL GGDLR+IQ +LGH LSTTQ+YT V+++ Sbjct: 242 LRAGLGLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQR---- 297 Query: 310 MMEIYDQTHP 319 ++E+YD+THP Sbjct: 298 LLEVYDKTHP 307 >gi|163761399|ref|ZP_02168473.1| site-specific tyrosine recombinase XerC [Hoeflea phototrophica DFL-43] gi|162281394|gb|EDQ31691.1| site-specific tyrosine recombinase XerC [Hoeflea phototrophica DFL-43] Length = 316 Score = 281 bits (718), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 147/322 (45%), Positives = 202/322 (62%), Gaps = 11/322 (3%) Query: 1 MEGNNLPE---IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK 57 M+G + + I + +++ E+Q WL L ER L+ T ++YE D RQFL FL + Sbjct: 1 MDGQTMEKPLVIAAPDVVAEQQRWLAQLTEERRLADKTAEAYERDLRQFLGFLTLHLGGP 60 Query: 58 ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117 I + L ++RAF+++RR + G R+L R L+GI+SFL++L+++ + + R Sbjct: 61 PKISDLADLRPLDLRAFMAERRREGAGARTLGRGLAGIRSFLRHLERKGLANAAGATATR 120 Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 K+ SLP+ L+ + A +VD L S E WI AR++A+L LLYGCGLRISEAL LT Sbjct: 121 APKQPKSLPKPLSARDARRVVD-ADLQLSDE-PWIAARDAAVLTLLYGCGLRISEALGLT 178 Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +I D +LRI GKG K RIVPLLP R AI +Y +L PF + P+FRG RG P Sbjct: 179 RNDIPRDGESLRITGKGGKTRIVPLLPIARSAISDYLELSPFRPAADA--PMFRGARGCP 236 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L P + Q+ +R LR L LP + T H LRHSFATHLL+ GGDLR+IQ +LGH LSTTQ+ Sbjct: 237 LQPAIVQKAMRALRSALDLPETATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQV 296 Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319 YT V + ++EIYD+ HP Sbjct: 297 YTGVETSR----LLEIYDRAHP 314 >gi|148559918|ref|YP_001259740.1| site-specific tyrosine recombinase XerC [Brucella ovis ATCC 25840] gi|148371175|gb|ABQ61154.1| tyrosine recombinase XerC [Brucella ovis ATCC 25840] Length = 315 Score = 280 bits (717), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 143/310 (46%), Positives = 201/310 (64%), Gaps = 13/310 (4%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L R+ WL++L+ R LS TL +YE DTRQFL FL + E +++ I L ++R Sbjct: 14 DLAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRIADLR 73 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 +F++ RR G R+L R L+G++S L++L+KR + + MR ++ SLP+ L Sbjct: 74 SFLANRRNDGAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKPLTAD 133 Query: 133 QALTLV--DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLR 189 A +V D + E WI ARN+A+L LLYGCGLRISEAL L+ + D + ++ Sbjct: 134 DARRVVSADGQMA----EEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARSMT 189 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 I GKG K R+VPLLP+V KA+ +Y LCPFDL+ PLFRG +G PL+ + QR +++ Sbjct: 190 ITGKGSKTRLVPLLPAVHKAVAQYRALCPFDLSAG--QPLFRGAKGGPLHAAIIQREMQK 247 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 LR LGLP S T H LRHSFATHLL GGDLR+IQ +LGH LSTTQ+YT ++++ Sbjct: 248 LRAGLGLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGIDTQR---- 303 Query: 310 MMEIYDQTHP 319 ++E+YD+THP Sbjct: 304 LLEVYDKTHP 313 >gi|254717978|ref|ZP_05179789.1| site-specific tyrosine recombinase XerC [Brucella sp. 83/13] gi|265982921|ref|ZP_06095656.1| tyrosine recombinase xerC [Brucella sp. 83/13] gi|306838931|ref|ZP_07471758.1| tyrosine recombinase XerC [Brucella sp. NF 2653] gi|306842934|ref|ZP_07475568.1| tyrosine recombinase XerC [Brucella sp. BO2] gi|264661513|gb|EEZ31774.1| tyrosine recombinase xerC [Brucella sp. 83/13] gi|306286862|gb|EFM58387.1| tyrosine recombinase XerC [Brucella sp. BO2] gi|306406001|gb|EFM62253.1| tyrosine recombinase XerC [Brucella sp. NF 2653] Length = 315 Score = 280 bits (715), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 143/310 (46%), Positives = 200/310 (64%), Gaps = 13/310 (4%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L R+ WL++L+ R LS TL +YE DTRQFL FL + E +++ I L ++R Sbjct: 14 DLAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRIADLR 73 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 +F++ RR G R+L R L+G++S L++L+KR + + MR ++ SLP+ L Sbjct: 74 SFLANRRNDGAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKPLTAD 133 Query: 133 QALTLV--DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLR 189 A +V D + E WI ARN+A+L LLYGCGLRISEAL L+ + D + ++ Sbjct: 134 DARRVVSADGQMA----EEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARSMT 189 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 I GKG K R+VPLLP+V KA+ +Y LCPFDL+ PLFRG +G PL+ + QR +++ Sbjct: 190 ITGKGSKTRLVPLLPAVHKAVAQYRALCPFDLSAG--QPLFRGAKGGPLHAAIIQREMQK 247 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 LR LGLP S T H LRHSFATHLL GGDLR+IQ +LGH LSTTQ+YT V+++ Sbjct: 248 LRAGLGLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQR---- 303 Query: 310 MMEIYDQTHP 319 ++E+YD+ HP Sbjct: 304 LLEVYDKAHP 313 >gi|49476240|ref|YP_034281.1| site-specific tyrosine recombinase XerC [Bartonella henselae str. Houston-1] gi|49239048|emb|CAF28348.1| Integrase /recombinase xerC [Bartonella henselae str. Houston-1] Length = 326 Score = 279 bits (714), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 150/307 (48%), Positives = 196/307 (63%), Gaps = 9/307 (2%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 +L R+NWL NL R ++ T Q+YE DTRQFL FL + T + + L ++RA Sbjct: 22 VLAARKNWLDNLLGTRRMATYTAQAYERDTRQFLFFLCQHLGHTPTFKDLANLRVIDLRA 81 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 +++ RR I RSL R ++GI+SF YL + I + +R K SLP+ LN K Sbjct: 82 YLAYRRKHDISARSLSRGMAGIRSFFNYLSREGIASIPAAKLVRTPKHPKSLPKPLNIKS 141 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-LRIQG 192 AL LV + WI ARN+A+L LLYGCG+RISEALSLTP+ D Q T L + G Sbjct: 142 ALHLVKQE--NQQENEPWIIARNTAVLMLLYGCGMRISEALSLTPEQFSDPQKTSLFVTG 199 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 KG K R+VPL+ V +AI Y CP+ L L+ Q P+FRG RG PL P + Q+ +R LR Sbjct: 200 KGGKTRLVPLIKVVYEAIQNYLKCCPYPL-LDNQ-PMFRGARGGPLQPAIIQKTVRNLRA 257 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 YLGLP + T HTLRHSFATHLLS GGDLR+IQ +LGH LSTTQ+YT+V++K+ ++E Sbjct: 258 YLGLPETATPHTLRHSFATHLLSRGGDLRTIQELLGHACLSTTQVYTHVDTKH----LLE 313 Query: 313 IYDQTHP 319 IY + HP Sbjct: 314 IYQKAHP 320 >gi|17986431|ref|NP_539065.1| site-specific tyrosine recombinase XerC [Brucella melitensis bv. 1 str. 16M] gi|256045523|ref|ZP_05448406.1| site-specific tyrosine recombinase XerC [Brucella melitensis bv. 1 str. Rev.1] gi|260562833|ref|ZP_05833319.1| tyrosine recombinase xerC [Brucella melitensis bv. 1 str. 16M] gi|265991947|ref|ZP_06104504.1| tyrosine recombinase xerC [Brucella melitensis bv. 1 str. Rev.1] gi|34222942|sp|Q8YJD9|XERC_BRUME RecName: Full=Tyrosine recombinase xerC gi|17982026|gb|AAL51329.1| integrase [Brucella melitensis bv. 1 str. 16M] gi|260152849|gb|EEW87941.1| tyrosine recombinase xerC [Brucella melitensis bv. 1 str. 16M] gi|263003013|gb|EEZ15306.1| tyrosine recombinase xerC [Brucella melitensis bv. 1 str. Rev.1] Length = 315 Score = 278 bits (712), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 145/310 (46%), Positives = 202/310 (65%), Gaps = 13/310 (4%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L R+ WL++L+ R LS TL +YE DTRQFL FL + E +++ I L ++R Sbjct: 14 DLAAAREEWLKSLKTMRRLSDNTLIAYERDTRQFLQFLTGHLGEPPSLKEIGNLRIADLR 73 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 +F++ RR G R+L R L+G++S L++L+KR + + MR ++ SLP+ L Sbjct: 74 SFLANRRNDGAGARTLGRGLAGVRSLLRHLEKRGLVNAAGASAMRAPRQPKSLPKPLTAD 133 Query: 133 QALTLV--DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLR 189 A +V D + E WI ARN+A+L LLYGCGLRISEAL L+ + D + ++ Sbjct: 134 DARRVVSADGQMA----EEPWIAARNAAVLTLLYGCGLRISEALGLSGDALSDPSARSMT 189 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 I GKG K R+VPLLP+V KA+ +Y LCPFDL+ QL LFRG +G PL+ + QR +++ Sbjct: 190 ITGKGSKTRLVPLLPAVHKAVAQYRALCPFDLSAG-QL-LFRGAKGGPLHAAIIQREMQK 247 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 LR LGLP S T H LRHSFATHLL GGDLR+IQ +LGH LSTTQ+YT V+++ Sbjct: 248 LRAGLGLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQR---- 303 Query: 310 MMEIYDQTHP 319 ++E+YD+THP Sbjct: 304 LLEVYDKTHP 313 >gi|239833042|ref|ZP_04681371.1| tyrosine recombinase XerC [Ochrobactrum intermedium LMG 3301] gi|239825309|gb|EEQ96877.1| tyrosine recombinase XerC [Ochrobactrum intermedium LMG 3301] Length = 315 Score = 278 bits (712), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 142/310 (45%), Positives = 203/310 (65%), Gaps = 13/310 (4%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L R+ WL+ L+ R LS+ TL +YE DTRQFL FL + E +++ + L ++R Sbjct: 14 DLAAAREEWLKTLKDARRLSENTLDAYERDTRQFLNFLTGHLGEPPSLKDVGNLRIADLR 73 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 +F++ RR + +G R+L R L+G++S L++L+KR + + MR ++ SLP+ L + Sbjct: 74 SFLASRRNEGVGARTLGRGLAGVRSLLRHLEKRGLANAAGASAMRAPRQPKSLPKPLTAE 133 Query: 133 QALTLV--DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLR 189 A +V D L E WI ARN+A+L LLYGCGLRISEAL LT + D + ++ Sbjct: 134 DARRVVAADGQLA----EEPWIAARNAAVLTLLYGCGLRISEALGLTGDALSDSTALSIT 189 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 I GKG+K R+VPLLP V +A+ +Y LCPFDL+ + PLFRG +G L+ + QR +++ Sbjct: 190 ITGKGNKARLVPLLPVVHRAVAQYRTLCPFDLSADK--PLFRGAKGGILHAAIIQREMQK 247 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 LR LGLP S T H LRHSFATHLL GGDLR+IQ +LGH LSTTQ+YT V+++ Sbjct: 248 LRAGLGLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTER---- 303 Query: 310 MMEIYDQTHP 319 ++E+YD+ HP Sbjct: 304 LLEVYDKAHP 313 >gi|240851325|ref|YP_002972728.1| integrase /recombinase XerC [Bartonella grahamii as4aup] gi|240268448|gb|ACS52036.1| integrase /recombinase XerC [Bartonella grahamii as4aup] Length = 322 Score = 278 bits (710), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 151/319 (47%), Positives = 205/319 (64%), Gaps = 14/319 (4%) Query: 5 NLPEI-VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 N+P I +L R+NWL+ L R +S T+Q+YE DTRQFL FL + T+ + Sbjct: 12 NIPLIPADHAILNARKNWLECLVQTRRMSAQTMQAYERDTRQFLSFLCQHLSHTPTLTDL 71 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 L +++RA+++ RRT + RSL R ++GI+SF KYL + I +R+ K Sbjct: 72 AHLRISDLRAYLAYRRTNNVSARSLSRGVAGIRSFFKYLSREGIVNVPAAQLIRSPKHPK 131 Query: 124 SLPRALNEKQALTLV--DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 SLP+ L K AL +V +N L WI ARN+A+L LLYGCG+RISEALSLTP+ Sbjct: 132 SLPKPLAIKSALHIVKQENQL----ENEPWISARNAAVLMLLYGCGMRISEALSLTPEQF 187 Query: 182 MD-DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240 D ++++L I GKG K R+VPL+ V +A+ Y CP+ L +N Q P+FRG RG PL P Sbjct: 188 SDPEKTSLFITGKGGKTRLVPLIKVVYEAVQNYLKCCPYPL-VNNQ-PIFRGARGGPLQP 245 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + Q+ +R LR LGLP + T HTLRHSFATHLLS GGDLR+IQ +LGH LSTTQIYT+ Sbjct: 246 AIIQKTVRNLRASLGLPETATPHTLRHSFATHLLSRGGDLRTIQELLGHASLSTTQIYTH 305 Query: 301 VNSKNGGDWMMEIYDQTHP 319 V++ D +++IY + HP Sbjct: 306 VDT----DHLLKIYQKAHP 320 >gi|153008277|ref|YP_001369492.1| site-specific tyrosine recombinase XerC [Ochrobactrum anthropi ATCC 49188] gi|151560165|gb|ABS13663.1| tyrosine recombinase XerC [Ochrobactrum anthropi ATCC 49188] Length = 315 Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 140/310 (45%), Positives = 203/310 (65%), Gaps = 13/310 (4%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L R+ WL+ L+ R LS+ TL++YE DTRQFL FL + E +++ + L ++R Sbjct: 14 DLAAAREEWLKTLKDARRLSENTLEAYERDTRQFLNFLTGHLGEPPSLKDVGNLRIADLR 73 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 +F++ RR + +G R+L R L+G++S L++L+KR + + MR ++ SLP+ L + Sbjct: 74 SFLASRRNEGVGARTLGRGLAGVRSLLRHLEKRGLANAAGASAMRAPRQPKSLPKPLTAE 133 Query: 133 QALTLV--DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLR 189 A +V D + E WI ARN+A+L LLYGCGLRISEAL L + D + ++ Sbjct: 134 DARRVVAADGQMA----EEPWIAARNAAVLTLLYGCGLRISEALGLMGDALSDSTARSIT 189 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 I GKG+K R+VPLLP V +A+ +Y LCPFDL+ + PLFRG +G L+ + QR +++ Sbjct: 190 ITGKGNKARLVPLLPIVHRAVAQYRTLCPFDLSADK--PLFRGAKGGVLHAAIIQREMQK 247 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 LR LGLP S T H LRHSFATHLL GGDLR+IQ +LGH LSTTQ+YT V+++ Sbjct: 248 LRAGLGLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTER---- 303 Query: 310 MMEIYDQTHP 319 ++E+YD+ HP Sbjct: 304 LLEVYDKAHP 313 >gi|114706518|ref|ZP_01439419.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506] gi|114537910|gb|EAU41033.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506] Length = 319 Score = 276 bits (707), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 141/322 (43%), Positives = 201/322 (62%), Gaps = 9/322 (2%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 +N+ S +++E WL+ L ER S+ T+++YE D RQF+IFL Y + Sbjct: 2 SNVLIFASKSVMREISAWLEALRNERQASEETVEAYERDVRQFMIFLTDYHARPSELDDF 61 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 L ++R+F++ RR G RSL R LSGI+SFL++L+KR + + + MR K++ Sbjct: 62 ADLKPMDLRSFLAARRRDGAGARSLGRGLSGIRSFLRHLEKRGLASSAGAKAMRAPKQTK 121 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 LPR L+ AL + + ++ W+ AR+ A+L LLYGCGLRISEAL+L + D Sbjct: 122 GLPRPLSVAGALDVTEEADAFSTE--PWVGARDVAVLTLLYGCGLRISEALTLRGDALTD 179 Query: 184 DQS-TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242 + + ++ I+GKG K R+VPL+P+V +A+ Y LCP DL+ PLFRG+RG PL P + Sbjct: 180 EMARSMTIRGKGGKTRLVPLIPAVHEAVATYRRLCPHDLDAG--HPLFRGVRGGPLRPQI 237 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 QR + +LR GLP S T H LRHSFATHLL+ GGDLR+IQ +LGH LSTTQ YT V+ Sbjct: 238 VQRNMARLRGAFGLPPSATPHALRHSFATHLLAAGGDLRTIQDLLGHASLSTTQAYTAVD 297 Query: 303 SKNGGDWMMEIYDQTHPSITQK 324 + D ++ +YD HP +K Sbjct: 298 A----DRLLSVYDNAHPRARRK 315 >gi|163869253|ref|YP_001610509.1| site-specific tyrosine recombinase XerC [Bartonella tribocorum CIP 105476] gi|161018956|emb|CAK02514.1| integrase/recombinase XerC [Bartonella tribocorum CIP 105476] Length = 322 Score = 276 bits (705), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 147/313 (46%), Positives = 200/313 (63%), Gaps = 13/313 (4%) Query: 10 VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69 V +L R+NWL+ L R +S T Q+YE DTRQFL FL + + T+ + L + Sbjct: 18 VDHAVLTARKNWLECLVKTRRMSAQTAQAYERDTRQFLFFLCQHLGQAPTLNDLAHLRVS 77 Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 ++RA+++ RRT + RSL R ++GI+SF KYL + I +++ K SLP+ L Sbjct: 78 DLRAYLAYRRTNNVSARSLSRGVAGIRSFFKYLSREGIVNVPAAQLIKSPKHPKSLPKPL 137 Query: 130 NEKQALTLV--DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-DQS 186 + AL +V +N L WI+ARN+A+L LLYGCG+RISEALSLTP+ D +++ Sbjct: 138 AIQSALHIVKQENQL----ENEPWINARNAAVLMLLYGCGMRISEALSLTPEQFSDPEKT 193 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 +L I GKG K R+VPL+ V +A+ Y CP+ L N PLFRG RG PL P + Q+ Sbjct: 194 SLFITGKGRKTRLVPLIKIVYEAVQNYLKCCPYPLRDN--QPLFRGARGGPLQPAIIQKT 251 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 +R LR LGLP + T HTLRHSFATHLLS GGDLR+IQ +LGH LSTTQ YT+V++ Sbjct: 252 VRNLRASLGLPETATPHTLRHSFATHLLSRGGDLRTIQELLGHASLSTTQTYTHVDT--- 308 Query: 307 GDWMMEIYDQTHP 319 D ++EIY + HP Sbjct: 309 -DHLLEIYQKAHP 320 >gi|319899442|ref|YP_004159539.1| integrase/recombinase XerC [Bartonella clarridgeiae 73] gi|319403410|emb|CBI76978.1| integrase/recombinase XerC [Bartonella clarridgeiae 73] Length = 322 Score = 273 bits (698), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 146/317 (46%), Positives = 203/317 (64%), Gaps = 10/317 (3%) Query: 5 NLPEI-VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 N+P I LL R+NWL++L R ++ T +YE DTRQFL FL + + T+ + Sbjct: 12 NIPLIPADHTLLIARKNWLESLVQTRRMTAQTAIAYERDTRQFLFFLCQHLGYQPTLNDL 71 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 L + RA+++ RRTQ I RSL R+++ ++SF YL + K +R K Sbjct: 72 ANLRVADFRAYLAYRRTQNINARSLSRNMASLRSFFNYLSREKEVNVPAAKLVRTPKYPK 131 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 SLP+AL + AL +V + WI ARN+AIL LLYGCG+RISEAL+LTP+ D Sbjct: 132 SLPKALTIESALRIVKEE--NQQENEPWIIARNTAILILLYGCGMRISEALALTPEQFAD 189 Query: 184 DQ-STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242 +L + GKG K R+VP++P V +A+ Y CP+ L LN Q P+FRG+RGKPL P + Sbjct: 190 PSIKSLSVTGKGGKTRLVPMIPIVHEAVENYLKCCPYPL-LNNQ-PIFRGVRGKPLQPAI 247 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 QR ++ LR +LGLP +TT H LRHSFATHLLS GGDLR+IQ +LGH LSTTQ+YT+++ Sbjct: 248 IQRTVQNLRAHLGLPETTTPHALRHSFATHLLSRGGDLRTIQELLGHACLSTTQVYTHID 307 Query: 303 SKNGGDWMMEIYDQTHP 319 + ++++EIY + HP Sbjct: 308 T----NYLLEIYQKAHP 320 >gi|49474762|ref|YP_032804.1| site-specific tyrosine recombinase XerC [Bartonella quintana str. Toulouse] gi|49240266|emb|CAF26736.1| Integrase /recombinase xerC [Bartonella quintana str. Toulouse] Length = 322 Score = 273 bits (697), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 146/307 (47%), Positives = 196/307 (63%), Gaps = 9/307 (2%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 +L R+NWL NL R ++ T Q+YE DTRQFL FL + K T + L T++RA Sbjct: 22 VLAARKNWLDNLLQTRRMATHTAQAYERDTRQFLSFLCQHLGHKPTFHDLANLRVTDLRA 81 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 +++ RRT I RSL R ++G++SF YL + I + +R K S SLP+ L K Sbjct: 82 YLAYRRTLNISARSLSRGMAGLRSFFNYLSREGIVSIPASKLVRTPKYSKSLPKPLAIKS 141 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQG 192 AL +V + WI ARN+A+L LLYGCG+RISEAL+LTP+ D ++++L + G Sbjct: 142 ALHVVKQE--NQQENESWIIARNAAVLILLYGCGMRISEALALTPEQFSDPEKTSLFVTG 199 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 KG K R+VPL+ V + I Y CP+ L N P+FRG RG PL+P + QR +R LR Sbjct: 200 KGGKTRLVPLIKVVYETIQNYLKCCPYPLVEN--QPMFRGARGGPLHPAIIQRTVRNLRS 257 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 LGLP + T H+LRHSFATHLLS GGDLR+IQ +LGH LSTTQIYT+V++ D ++E Sbjct: 258 SLGLPETATPHSLRHSFATHLLSRGGDLRTIQELLGHASLSTTQIYTHVDT----DRLLE 313 Query: 313 IYDQTHP 319 IY + HP Sbjct: 314 IYQKAHP 320 >gi|319404836|emb|CBI78437.1| integrase/recombinase XerC [Bartonella rochalimae ATCC BAA-1498] Length = 321 Score = 271 bits (692), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 145/308 (47%), Positives = 198/308 (64%), Gaps = 11/308 (3%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 LL R+NWL +L R ++ T +YE DTRQFL FL + + T+ + L ++RA Sbjct: 21 LLIARKNWLDHLTQTRRMALHTAVAYERDTRQFLFFLCQHLGYQPTLDDLADLRVADLRA 80 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 +++ RRTQ I RSL R+++ ++SF YL + K+ +R K SLP+ L + Sbjct: 81 YLAYRRTQNISARSLSRNMASLRSFFNYLSREKLVNVPAAKLVRTPKHPKSLPKPLTIES 140 Query: 134 ALTLVDNVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQ 191 AL +V ET+ WI ARN+AIL LLYGCG+RISEAL+LTP+ D +L + Sbjct: 141 ALRIVKE---ENQQETEPWIIARNTAILILLYGCGMRISEALALTPEQFADPSIKSLSVN 197 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 GKG K R++PL+P V KAI Y CP+ L +N Q P+F G+RGKPL P + QR ++ LR Sbjct: 198 GKGGKTRLIPLIPIVHKAIENYLKCCPYPL-VNTQ-PIFLGVRGKPLQPAIIQRTVQNLR 255 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 LGLP +TT H LRHSFATHLLS GGDLR+IQ +LGH LSTTQIYT++++ + ++ Sbjct: 256 ARLGLPETTTPHALRHSFATHLLSRGGDLRTIQELLGHACLSTTQIYTHIDTNH----LL 311 Query: 312 EIYDQTHP 319 EIY + HP Sbjct: 312 EIYQKAHP 319 >gi|319406320|emb|CBI79957.1| integrase/recombinase XerC [Bartonella sp. AR 15-3] Length = 321 Score = 269 bits (688), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 146/310 (47%), Positives = 202/310 (65%), Gaps = 15/310 (4%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 LL R+NWL +L R ++ T+ +YE DTRQFL FL + + T+ + L ++RA Sbjct: 21 LLIARKNWLDHLTQTRRMAVHTVVAYERDTRQFLFFLCKHLGYQPTLNDLADLRVADLRA 80 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 +++ RRTQ I RSL R+++ ++SF YL + ++ +R K SLP++L + Sbjct: 81 YLAYRRTQNINARSLSRNMASLRSFFNYLSREQLVNVPAAKLVRTPKYPKSLPKSLTIES 140 Query: 134 ALTLV--DNVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-STLR 189 AL +V DN ET+ WI ARN+AIL LLYGCG+RISEAL+LTP+ D +L Sbjct: 141 ALRIVREDN-----QQETEPWIIARNTAILILLYGCGMRISEALALTPEKFSDPNIKSLP 195 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 I GKG K R++PL+P AI Y CP+ L +N Q P+FRG+RGKPL P + QR ++ Sbjct: 196 ITGKGGKTRLIPLIPIAHTAIKNYLKCCPYPL-VNNQ-PIFRGVRGKPLQPAIIQRTVQN 253 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 LR +LGLP +TT H LRHSFATHLLS GGDLR+IQ +LGH LSTTQIYT++++ + Sbjct: 254 LRAHLGLPETTTPHALRHSFATHLLSRGGDLRTIQELLGHACLSTTQIYTHIDTNH---- 309 Query: 310 MMEIYDQTHP 319 ++EIY + HP Sbjct: 310 LLEIYQKAHP 319 >gi|319407796|emb|CBI81447.1| integrase/recombinase XerC [Bartonella sp. 1-1C] Length = 321 Score = 269 bits (687), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 143/308 (46%), Positives = 198/308 (64%), Gaps = 11/308 (3%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 LL R+NWL +L R ++ T +YE DTRQFL FL + + + + L ++RA Sbjct: 21 LLIARKNWLDHLIQTRRMALHTAVAYERDTRQFLFFLCQHLGYQPALNDLADLHVADLRA 80 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 +++ RRTQ I RSL R+++ ++SF YL + K+ +R K SLP+ L + Sbjct: 81 YLAYRRTQNISARSLSRNMASLRSFFNYLSREKLVNVPAAKLVRTPKHRKSLPKPLTIES 140 Query: 134 ALTLVDNVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQ 191 AL +V ET+ WI ARN+AIL LLYGCG+RISEAL+LTP+ D +L + Sbjct: 141 ALRIVKE---ENQQETEPWIIARNTAILILLYGCGMRISEALALTPEQFADPSIKSLSVT 197 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 GKG K R++PL+P V KAI Y CP+ L +N Q P+F G+RGKPL P + QR ++ LR Sbjct: 198 GKGGKTRLIPLIPIVHKAIENYLKCCPYPL-VNTQ-PIFLGVRGKPLQPAIIQRAVQNLR 255 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 +LGLP +TT H LRHSFATHLLS GGDLR+IQ +LGH LSTTQ+YT++++ + ++ Sbjct: 256 AHLGLPETTTPHALRHSFATHLLSRGGDLRTIQELLGHACLSTTQVYTHIDTNH----LL 311 Query: 312 EIYDQTHP 319 EIY + HP Sbjct: 312 EIYQKAHP 319 >gi|319409399|emb|CBI83043.1| integrase/recombinase XerC [Bartonella schoenbuchensis R1] Length = 332 Score = 269 bits (687), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 141/324 (43%), Positives = 207/324 (63%), Gaps = 10/324 (3%) Query: 2 EGNNLPEIVSFE-LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 +G N P I + + LL R+ WL+ L R ++ T Q+YE DTRQFLIFL + ++T Sbjct: 9 KGQNAPLIPAEQGLLVARKKWLEGLVKTRRMATHTAQAYERDTRQFLIFLCHHLGHEVTC 68 Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 + + L ++RA+++ RRT KI RSL R+++ ++SF YL + I +R K Sbjct: 69 KDLADLRVVDLRAYLAHRRTLKISARSLSRNVASLRSFFNYLSREGIVDTLAAKLIRTPK 128 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 LP+ LN + AL ++ + + WI ARN A+L LLYGCG+RISEAL+LTP+ Sbjct: 129 HPKLLPKPLNVQAALHIIKPE--NQQEDEPWIIARNVAVLALLYGCGMRISEALALTPEQ 186 Query: 181 IMDDQ-STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239 D + ++L + GKG K R+VPL+ +V + + Y CP+ L ++ Q P+FRG+RG PL Sbjct: 187 FSDPEITSLSVIGKGGKTRLVPLIKTVYEMVETYLKCCPYPL-VSTQ-PMFRGVRGGPLQ 244 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 P + QR ++ LR LGLP +TT H LRHSFATHLLS GGDLR+IQ +LGH LSTTQ+YT Sbjct: 245 PAIIQRLVQNLRARLGLPETTTPHALRHSFATHLLSRGGDLRTIQELLGHACLSTTQVYT 304 Query: 300 NVNSKNGGDWMMEIYDQTHPSITQ 323 ++++ D ++E+Y + HP ++ Sbjct: 305 HIDT----DRLLEVYQKAHPRASK 324 >gi|260431124|ref|ZP_05785095.1| site-specific tyrosine recombinase XerC [Silicibacter lacuscaerulensis ITI-1157] gi|260414952|gb|EEX08211.1| site-specific tyrosine recombinase XerC [Silicibacter lacuscaerulensis ITI-1157] Length = 306 Score = 265 bits (678), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 135/301 (44%), Positives = 192/301 (63%), Gaps = 9/301 (2%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q WL++L G S T +Y D FL F+ + E+ + + ++S T++RA+++++ Sbjct: 13 QLWLESLSALAGRSDNTTNAYRRDVTDFLAFMTLHHNERQGLAALERISVTDMRAWMAQQ 72 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R +G RSL R LS +KSF ++L +R+ + +L+ R K + LPR L E A ++ Sbjct: 73 RDSGVGARSLARKLSAVKSFYRWLAEREGFEPTAVLSTRAPKFTKKLPRPLAEDAARAMI 132 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + V L +S + W+ AR+ A++ LLYGCGLRISEALSLT + +TLRI GKGDK R Sbjct: 133 ETVELQSSSD--WVAARDVAVVTLLYGCGLRISEALSLTGADA-PLPATLRIVGKGDKER 189 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 IVP++P+ R+A+ Y +LCP PLFRG+RGK LNP Q + + R LGLP Sbjct: 190 IVPVIPAARQAVDRYLELCPHPQGAT--EPLFRGVRGKALNPKAIQSVMAKARMQLGLPA 247 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + T H +RHSFATHLLS GGDLR+IQ +LGH LSTTQ YT V++ +ME+Y++TH Sbjct: 248 TATPHAMRHSFATHLLSAGGDLRAIQELLGHASLSTTQAYTAVDTAR----LMEVYNRTH 303 Query: 319 P 319 P Sbjct: 304 P 304 >gi|304394248|ref|ZP_07376171.1| tyrosine recombinase XerC [Ahrensia sp. R2A130] gi|303293688|gb|EFL88065.1| tyrosine recombinase XerC [Ahrensia sp. R2A130] Length = 342 Score = 264 bits (675), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 132/312 (42%), Positives = 193/312 (61%), Gaps = 16/312 (5%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 K R+ WL+ +E ER ++ T+++Y+ D +QF +FL Y ++ L +RA++ Sbjct: 37 KARERWLRWMETERRMAARTMEAYDRDLQQFCLFLTDYHGRPAKVKDFADLRPISLRAYL 96 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 ++RR G R+L R L+GI SF+++L+++ + + + I MR ++ +LP+ + QAL Sbjct: 97 AQRRNTGAGPRTLARGLAGIGSFIRHLERQGLASSAGITAMRAPRQPRTLPKPVRADQAL 156 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--------MDDQST 187 L + HE WI AR++A++ LLYGCGLR+ EAL LTP ++ T Sbjct: 157 RLTETS--EQLHEEPWIAARDAALMTLLYGCGLRLGEALGLTPFDLGITNMAAPTVTTDT 214 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 LRI GKG K R+VPLLP V +AI Y LCP + + P+FRG+RG P+ P VFQR + Sbjct: 215 LRITGKGGKTRLVPLLPVVGEAIASYLRLCPHVIEADA--PIFRGMRGGPVQPAVFQRAM 272 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 ++R LGLP + T H LRHSFATHLL NGGDLR+IQ +LGH LSTTQ YT V++++ Sbjct: 273 ARMRGALGLPSTATPHALRHSFATHLLGNGGDLRTIQELLGHASLSTTQKYTAVDTES-- 330 Query: 308 DWMMEIYDQTHP 319 +M + HP Sbjct: 331 --LMASWAAAHP 340 >gi|254460911|ref|ZP_05074327.1| tyrosine recombinase XerC [Rhodobacterales bacterium HTCC2083] gi|206677500|gb|EDZ41987.1| tyrosine recombinase XerC [Rhodobacteraceae bacterium HTCC2083] Length = 306 Score = 261 bits (668), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 130/301 (43%), Positives = 192/301 (63%), Gaps = 9/301 (2%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++WL+ + +G S+ T+++Y DT F+ F+ Y E + + +++ ++RA++++ Sbjct: 13 EHWLETQKSLKGGSENTIKAYSADTADFIGFMTSYKSEPQGLAALARITTRDMRAWMAQT 72 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R ++ RSL R LS +KSF ++L +R+ + +L +R K LPR L + A ++ Sbjct: 73 RGDEVSARSLARKLSSVKSFYRWLAEREGFEPTAVLTIRAPKFQKKLPRPLAVEAAKAMI 132 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + V T+H W+ AR+SA+L LLYGCGLRISEAL LT ++ + LRI GKG K R Sbjct: 133 ETVEYQTAH--TWVAARDSAVLTLLYGCGLRISEALGLTGADV-PLPTALRILGKGGKER 189 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +VP+LP+ R+A+ Y ++CP+ L N PLFRGIRG LNP Q + + R LGLP Sbjct: 190 VVPVLPAAREAVQAYLNICPYPLEPNA--PLFRGIRGGALNPRAVQSVMAKARMQLGLPA 247 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + T H +RHSFATHLLS GGDLRSIQ +LGH LSTTQ YT V++ +ME+Y++ H Sbjct: 248 TATPHAMRHSFATHLLSAGGDLRSIQELLGHSSLSTTQAYTAVDTAR----LMEVYERAH 303 Query: 319 P 319 P Sbjct: 304 P 304 >gi|121602434|ref|YP_988421.1| site-specific tyrosine recombinase XerC [Bartonella bacilliformis KC583] gi|120614611|gb|ABM45212.1| tyrosine recombinase xerC [Bartonella bacilliformis KC583] Length = 322 Score = 260 bits (664), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 135/307 (43%), Positives = 192/307 (62%), Gaps = 9/307 (2%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 +L RQ+WL++L ++ T+++YE DTRQFL FL + K T + L ++R+ Sbjct: 22 VLAARQSWLESLLHIHRMATRTVEAYERDTRQFLFFLCQHLGRKPTYHDLADLQVADLRS 81 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 +++ RR Q + RSL R+++ ++SF YL + + +R K + SLP+ L K Sbjct: 82 YMAYRRKQMVSTRSLSRNMASMRSFFNYLSRENLVDVPAAKLVRTPKYAKSLPKTLTMKA 141 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-LRIQG 192 ALT+V + + WI ARN+A+L LLYGCG+RISEAL+LTP+ D T L I G Sbjct: 142 ALTIVKQG--NQQEDEPWIAARNAAVLTLLYGCGMRISEALALTPKQFSDPNVTSLSIVG 199 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 KG K R+VPL+ +V +++ Y CP+ L N P+FRG RG PL P + QR ++ LR Sbjct: 200 KGGKTRLVPLIKTVYESVETYLKCCPYPLGDN--QPMFRGARGGPLQPAIIQRAVQNLRA 257 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 LGLP + T H LRHSFATHLLS GG+LR IQ +LGH LSTTQ+YT ++S D +++ Sbjct: 258 SLGLPKTATPHALRHSFATHLLSRGGNLRIIQELLGHASLSTTQVYTEIDS----DRLLD 313 Query: 313 IYDQTHP 319 IY + HP Sbjct: 314 IYQKAHP 320 >gi|254470878|ref|ZP_05084281.1| tyrosine site-specific integrase/recombinase protein [Pseudovibrio sp. JE062] gi|211960020|gb|EEA95217.1| tyrosine site-specific integrase/recombinase protein [Pseudovibrio sp. JE062] Length = 319 Score = 259 bits (663), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 141/318 (44%), Positives = 203/318 (63%), Gaps = 9/318 (2%) Query: 3 GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62 G +L I ++ ++W+ +L ER L++ TL++YE DTRQFL F+ Y E + ++ Sbjct: 8 GEDLLIICKPDVTAAIEDWIDHLGSERRLAERTLEAYERDTRQFLRFMTSYEGEPVALRH 67 Query: 63 IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122 + L + R F++ RR R+L R L+GI+SFL +L++R + +R + Sbjct: 68 LESLKPKDFRGFLATRRKDGAQTRTLARGLAGIRSFLSFLEERGEVNAAGAAAVRTPRLP 127 Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI- 181 SLP+ + ++A +V + L +T W++ARN+A+ LLYGCGLRISEALSLTP Sbjct: 128 RSLPKPIPVEEAKAIVSSDLAF--EDTPWVEARNAAVFTLLYGCGLRISEALSLTPATAP 185 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241 + +L+++GKG+K R+VP+LP V +AI Y D CP+DL+ N PLFRG+RG LN Sbjct: 186 KEGDKSLKVRGKGNKERLVPVLPVVVEAIEAYKDQCPYDLSANS--PLFRGVRGGALNAR 243 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + Q ++++R LGLP + T H LRHSFATHLLS GGDLRSIQ +LGH LSTTQIYT V Sbjct: 244 MIQLAMQKIRSALGLPDTATPHALRHSFATHLLSEGGDLRSIQELLGHASLSTTQIYTEV 303 Query: 302 NSKNGGDWMMEIYDQTHP 319 NS +++ YD+ HP Sbjct: 304 NSAQ----LLDAYDKAHP 317 >gi|110635731|ref|YP_675939.1| site-specific tyrosine recombinase XerC [Mesorhizobium sp. BNC1] gi|110286715|gb|ABG64774.1| tyrosine recombinase XerC subunit [Chelativorans sp. BNC1] Length = 313 Score = 257 bits (657), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 140/310 (45%), Positives = 191/310 (61%), Gaps = 13/310 (4%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 ELLK R WL +L+ ER L+ LTL +YE DTRQFL FL + + I L ++R Sbjct: 12 ELLKARAEWLSSLKEERRLAPLTLDAYERDTRQFLQFLTRHGGGAPGLCDIAALRPADLR 71 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 AF++ RR G R+L R L+G++SFL++L+KR + + +R + LP+ L Sbjct: 72 AFLAARRIDGAGARTLGRGLAGVRSFLRFLEKRGLANAAGAGALRAPRAPKGLPKPLTAA 131 Query: 133 QA--LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLR 189 A +T + L E WI ARN+A+ LLYG GLRI EAL L +I +S +LR Sbjct: 132 DAKRVTSGEGQLA----EEPWIAARNAAVFALLYGSGLRIGEALGLKGVDIAALRSGSLR 187 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 + GKG K R+VP+LP V +A+ EY LCP+ +L + PLFRG RG L P + QR +++ Sbjct: 188 VTGKGSKTRVVPVLPVVGEAVAEYQRLCPY--HLEAEAPLFRGARGGALQPAIIQREMQK 245 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 +R L LP + T H LRHSFATHLL GGDLR+IQ +LGH LSTTQ+YT V++ Sbjct: 246 MRSALNLPDTATPHALRHSFATHLLGRGGDLRAIQELLGHASLSTTQVYTAVDTSR---- 301 Query: 310 MMEIYDQTHP 319 ++EIY+ HP Sbjct: 302 LLEIYENAHP 311 >gi|332559009|ref|ZP_08413331.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides WS8N] gi|332276721|gb|EGJ22036.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides WS8N] Length = 306 Score = 257 bits (656), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 132/301 (43%), Positives = 182/301 (60%), Gaps = 10/301 (3%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + WL + G S T+++Y D +L FLA + E ++ + + + ++RA+++ Sbjct: 14 EAWLTHQRAIEGASAHTIRAYAADVTGWLAFLAGHLGEGYGLKMLASVPHADLRAWMAHE 73 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + +G RSL RSLS ++ F +L +R+ + +L+ R K LPR L+E A L+ Sbjct: 74 RARGLGARSLARSLSAVRQFTGWLAEREGVDATAVLSARGPKFRRKLPRPLSEADAKALL 133 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 V + + WI AR+ A++ LLYGCGLRISEAL L P LRI+GKGDK R Sbjct: 134 STVAEEAAED--WIRARDLAVVTLLYGCGLRISEALGL-PGTAHPLPEVLRIRGKGDKER 190 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +VP LP R+A+ Y LCPFDL + LFRG RG PLNP + R + + R LGLP Sbjct: 191 LVPSLPVAREAVARYAALCPFDLASGV---LFRGARGGPLNPRLVARTMERARATLGLPP 247 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + T H LRHSFATHLL+ GGDLRSIQ +LGH LSTTQ+YT V+ G +ME+Y + H Sbjct: 248 TATPHALRHSFATHLLNAGGDLRSIQELLGHASLSTTQVYTAVD----GARLMEVYAKAH 303 Query: 319 P 319 P Sbjct: 304 P 304 >gi|307942817|ref|ZP_07658162.1| tyrosine recombinase XerC [Roseibium sp. TrichSKD4] gi|307773613|gb|EFO32829.1| tyrosine recombinase XerC [Roseibium sp. TrichSKD4] Length = 320 Score = 256 bits (655), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 140/301 (46%), Positives = 188/301 (62%), Gaps = 10/301 (3%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR- 79 WL +L ER L+ TL SYE D RQFL FL + ++ + +L + R+F++KRR Sbjct: 24 WLDHLADERRLADKTLVSYERDVRQFLRFLTGHLGGAPCVKDLGELRPADYRSFLAKRRQ 83 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 K G RSL R LSG++SFL++L+KR + I +R + + SLP+ L A +V Sbjct: 84 ADKAGSRSLARGLSGVRSFLRFLEKRGELNAAAIGAVRPPRIAQSLPKPLTVPDAEEIVS 143 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIR 198 L S WI+ RN A+L LLYGCGLRISEALSLT + D T+RI GKG K R Sbjct: 144 GDLGLESE--TWIETRNMAVLTLLYGCGLRISEALSLTGRTAPKGDARTMRITGKGGKER 201 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +VP+LP V +AI Y CP+ + N PLF G RG LNP + Q+ + ++R LGLP Sbjct: 202 LVPMLPVVTQAIETYIAQCPYPITANG--PLFLGARGGALNPRLIQKAMEKMRSALGLPA 259 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 S T H LRHSFATHLL+ GGDLR+IQ ++GH LS+TQIYT ++S + ++ YD++H Sbjct: 260 SATPHALRHSFATHLLAGGGDLRTIQELMGHASLSSTQIYTQIDSAS----LLAAYDRSH 315 Query: 319 P 319 P Sbjct: 316 P 316 >gi|149915599|ref|ZP_01904125.1| tyrosine recombinase [Roseobacter sp. AzwK-3b] gi|149810491|gb|EDM70334.1| tyrosine recombinase [Roseobacter sp. AzwK-3b] Length = 304 Score = 256 bits (654), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 131/301 (43%), Positives = 185/301 (61%), Gaps = 9/301 (2%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q WL+ + +G + TL++Y D FL F+ + E I + ++ T++RA+++ Sbjct: 11 QGWLETQKALKGAADNTLEAYGRDVAGFLTFMTGHKGEMQGIAPLTRIGVTDMRAWMAFI 70 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + +G RSL R LS +KSF ++L +R+ + +L+ R K LPR L + A L+ Sbjct: 71 RGEDVGPRSLARKLSAVKSFYRWLAEREGFDATAVLSARAPKFQRKLPRPLAPEAAQDLI 130 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + L ++ T W+ AR+ A++ LLYGCGLRISEAL LT ++ ++ LRI GKG K R Sbjct: 131 DTLELQSA--TPWVAARDQAVVTLLYGCGLRISEALGLTGGDLPMGEA-LRITGKGGKER 187 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 IVP++ R A+ Y LCPFDL PLFRG+RG PLNP Q+ R LGLP Sbjct: 188 IVPVIAPARDAVAHYARLCPFDLRPGT--PLFRGMRGGPLNPRAVQKVTEAARTQLGLPA 245 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + T H +RHSFATHLL+ GGDLR+IQ +LGH LSTTQ YT V++ +ME+Y + H Sbjct: 246 TATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYTAVDTSR----LMEVYRKAH 301 Query: 319 P 319 P Sbjct: 302 P 302 >gi|118590571|ref|ZP_01547973.1| site-specific tyrosine recombinase XerC [Stappia aggregata IAM 12614] gi|118437034|gb|EAV43673.1| site-specific tyrosine recombinase XerC [Stappia aggregata IAM 12614] Length = 319 Score = 256 bits (654), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 139/310 (44%), Positives = 193/310 (62%), Gaps = 13/310 (4%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 EL + WL +L ER LS TL +YE D RQFL FL + ++ I L + R Sbjct: 18 ELNRRVDQWLDHLSDERRLSDKTLLAYERDLRQFLRFLTNHLGGAPDLKEIAALRPADFR 77 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F++ RR + RSL R L+GI+SFL++L++R + +R +++ SLP+ ++ K Sbjct: 78 GFLASRRRDGVQSRSLARGLAGIRSFLRFLERRGEVNAAASAAVRPPRQARSLPKPVSSK 137 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLR 189 A+ + L S W++ARN+A+L LLYGCGLRISEALSLT M ++ TLR Sbjct: 138 DAIDVTSGELAMESE--PWLEARNAAVLTLLYGCGLRISEALSLT--GAMAPRTGTKTLR 193 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 + GKG K RIVP+LP+V +A+ Y LCP+ ++ PLF G RG PLNP + Q + + Sbjct: 194 VVGKGGKERIVPILPAVCQAVEHYLKLCPYAISPGG--PLFLGARGGPLNPRMIQLAMAR 251 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 LR LGLP S T H LRHSFATHLL+ GGDLR+IQ +LGH L++TQIYT ++S + Sbjct: 252 LRGALGLPDSATPHALRHSFATHLLAGGGDLRTIQELLGHASLASTQIYTEIDSAH---- 307 Query: 310 MMEIYDQTHP 319 ++ YD+ HP Sbjct: 308 LLAAYDKAHP 317 >gi|254504224|ref|ZP_05116375.1| site-specific recombinase, phage integrase family protein [Labrenzia alexandrii DFL-11] gi|222440295|gb|EEE46974.1| site-specific recombinase, phage integrase family protein [Labrenzia alexandrii DFL-11] Length = 317 Score = 256 bits (654), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 141/304 (46%), Positives = 194/304 (63%), Gaps = 17/304 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL +L ER LS TL +YE D RQFL FL + I+ I L + R F+++RR Sbjct: 24 WLDHLSDERRLSDKTLIAYERDLRQFLRFLTDHLGGAPGIKDIADLRPADFRGFLAQRRR 83 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 K+ RSL R L+GI+SFLK+L++R + +R ++ SLP+ ++ K A+ + Sbjct: 84 NKVQSRSLARGLAGIRSFLKFLERRGEINAAASDAVRPPRQLRSLPKPVSAKDAIDITSG 143 Query: 141 VLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLT----PQNIMDDQSTLRIQGKGD 195 L + ET+ W++ARN+A+L LLYGCGLRISEALSLT PQ T+RI GKG Sbjct: 144 DL---AMETEAWVEARNAAVLTLLYGCGLRISEALSLTGKMAPQP---GTKTMRIIGKGR 197 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 K RIVP+LP+V +A+ Y LCP+ ++ + PLF G RG PLNP + Q + +LR LG Sbjct: 198 KERIVPILPAVCEAVAHYVKLCPYAISPDG--PLFLGARGGPLNPRMIQLSMAKLRGALG 255 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 LP + T H LRHSFATHLL+ GGDLR+IQ +LGH L++TQIYT ++S + ++ YD Sbjct: 256 LPETATPHALRHSFATHLLAGGGDLRTIQELLGHASLASTQIYTEIDSAH----LLAAYD 311 Query: 316 QTHP 319 + HP Sbjct: 312 KAHP 315 >gi|319780736|ref|YP_004140212.1| tyrosine recombinase XerC [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166624|gb|ADV10162.1| tyrosine recombinase XerC [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 312 Score = 254 bits (649), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 140/308 (45%), Positives = 190/308 (61%), Gaps = 9/308 (2%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L R++WL+ L ER LS T+++YE DTRQFL FL + I I L ++R Sbjct: 11 DLQAARESWLKMLARERRLSPETVEAYERDTRQFLHFLTGHCGGSPGISDIADLRPADLR 70 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F++ RR G R+L R L+GI+S L++L++R + + +R ++ SLP+ L Sbjct: 71 GFLAARRNGGAGARTLGRGLAGIRSLLRFLERRGLANAAGAAALRAPRQPKSLPKPLTAS 130 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-LRIQ 191 A +V + E WI ARN+A+L LLYG GLRISEAL L ++ T LR+ Sbjct: 131 DAKHIVS--IEGQLAEEPWIAARNAAVLTLLYGSGLRISEALGLAGADLASAADTVLRVA 188 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 GKG K R+VP+LP +AI EY LCP+ +L+ + LFRG RG PLNP + QR + +LR Sbjct: 189 GKGGKTRLVPVLPVALRAIAEYRRLCPY--HLDPKGLLFRGARGGPLNPAIVQRDMAKLR 246 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 L LP + T H LRHSFATHLL GGDLR+IQ +LGH LSTTQIYT V++ ++ Sbjct: 247 SALNLPDTATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQIYTGVDTAR----LL 302 Query: 312 EIYDQTHP 319 EIY+Q HP Sbjct: 303 EIYEQAHP 310 >gi|182680028|ref|YP_001834174.1| integrase family protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182635911|gb|ACB96685.1| integrase family protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 323 Score = 252 bits (644), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 132/302 (43%), Positives = 185/302 (61%), Gaps = 7/302 (2%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + WL +L ER +S LT ++Y D RQFL FLA + +++T +L+ ++RAF++ R Sbjct: 25 EAWLLHLSGERRVSALTAEAYARDLRQFLAFLAEHFGGAPSLETFAELTPADLRAFMTAR 84 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R Q +G RSL R L+G++SF ++L++ +R K + LP+ LN A +V Sbjct: 85 RNQDVGSRSLSRQLAGLRSFARFLEREGKGKALVFSAVRTPKLARHLPKPLNPTAACEVV 144 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKI 197 D + W+ AR++A+L LLYG GLRISEALSLT + + + L + GKG K Sbjct: 145 DVANRTDTERPAWVLARDAAVLGLLYGAGLRISEALSLTRREAPIGETDALTVTGKGRKT 204 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 R+VP++ VR+ I Y LCP+ L Q PLF G +G PL+P + Q + Q+R LGLP Sbjct: 205 RMVPIIEPVRRGIESYLALCPYPLP--PQGPLFVGAKGGPLSPRIIQLAVEQMRGALGLP 262 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 S T H LRHSFATHLL GGDLR+IQ +LGH LSTTQ+YT V+S+ ++E Y Sbjct: 263 KSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQLYTAVDSER----LLEAYRSA 318 Query: 318 HP 319 HP Sbjct: 319 HP 320 >gi|110679359|ref|YP_682366.1| site-specific tyrosine recombinase XerC [Roseobacter denitrificans OCh 114] gi|109455475|gb|ABG31680.1| tyrosine recombinase XerC [Roseobacter denitrificans OCh 114] Length = 306 Score = 251 bits (642), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 128/301 (42%), Positives = 183/301 (60%), Gaps = 9/301 (2%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q+WL + +G ++ TL +Y+ D FL F+ + + + +S T++RA++++ Sbjct: 13 QSWLAHQRAIKGAAENTLIAYQGDVIDFLSFITAHKGAPQGLGALADVSVTDMRAWMAQT 72 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + RSL R LS +K+F K+L R+ + +L+ R K LPR L A L+ Sbjct: 73 RETGVAARSLARKLSAVKAFYKWLALREGFEPTAVLSTRAPKFQKKLPRPLAPDAARNLI 132 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + + + H W+ AR+ A++ LL+GCGLRISEALSLT + +TLRI GKG K R Sbjct: 133 DAIEIQSQHP--WVCARDVAVVTLLWGCGLRISEALSLTAAD-APLPATLRISGKGGKER 189 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 IVP+LP+ R A+ Y +CP + PLFR +RG PL PG Q+ + R LGLP Sbjct: 190 IVPVLPAARDAVDAYVRMCPHPQTADA--PLFRAVRGGPLRPGAIQKVMAAARMQLGLPA 247 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + T H +RHSFATHLL+ GGDLR+IQ +LGH LSTTQ YT V++ +ME+YD+TH Sbjct: 248 TATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYTAVDTVR----LMEVYDRTH 303 Query: 319 P 319 P Sbjct: 304 P 304 >gi|254512300|ref|ZP_05124367.1| tyrosine recombinase XerC [Rhodobacteraceae bacterium KLH11] gi|221536011|gb|EEE38999.1| tyrosine recombinase XerC [Rhodobacteraceae bacterium KLH11] Length = 306 Score = 251 bits (640), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 127/302 (42%), Positives = 190/302 (62%), Gaps = 11/302 (3%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q+WL +L G S+ T +Y D +FL F+ + E+ + + +++ +++RA+++ + Sbjct: 13 QHWLDSLRALAGRSENTQNAYRGDVTEFLSFMTLHHSERQGLAALERITVSDMRAWMADQ 72 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + RSL R LS +KSF ++L +R+ + +L+ R K + LPR L E A ++ Sbjct: 73 RNSDVSARSLARKLSAVKSFYRWLAEREGFEPTAVLSTRAPKFTKKLPRPLAEDAARAMI 132 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKI 197 + V L ++ + W+ AR+ A++ LLYGCGLRISEALSLT + + D TLRI GKG+K Sbjct: 133 ETVELQSA--SDWVAARDVAVVTLLYGCGLRISEALSLTGADAPLPD--TLRILGKGEKE 188 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 R+VP++P+ R A+ Y LCP + + L FRG+RG LNP Q + + R LGLP Sbjct: 189 RVVPVIPAARSAVDRYLRLCPHPQSPDAAL--FRGVRGGALNPSAIQGVMAKARMQLGLP 246 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + T H +RHSFATHLLS GGDLR+IQ +LGH LSTTQ YT V++ +ME+Y++ Sbjct: 247 ATATPHAMRHSFATHLLSAGGDLRAIQELLGHASLSTTQAYTAVDTAR----LMEVYNRA 302 Query: 318 HP 319 HP Sbjct: 303 HP 304 >gi|90421041|ref|ZP_01228944.1| tyrosine recombinase XerC [Aurantimonas manganoxydans SI85-9A1] gi|90334676|gb|EAS48453.1| tyrosine recombinase XerC [Aurantimonas manganoxydans SI85-9A1] Length = 319 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 136/308 (44%), Positives = 186/308 (60%), Gaps = 11/308 (3%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 LL E+ WL L ER S T+++YE D RQFLIFL Y + + L ++R Sbjct: 13 LLDEKAAWLTILADERRSSPHTIEAYERDLRQFLIFLTDYHARPAQLGDLADLKTADLRG 72 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 F++ RR G +++ R L+G++SF+++L+++ + + + MR K+ SLPR L Sbjct: 73 FLAARRRDGAGAKTMGRGLAGVRSFIRHLERKGLASSAGAKAMRAPKQPKSLPRPLTVDD 132 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQ 191 A+ + + WI AR+ AIL LLYGCGLRISEALSL P + + D + ++ + Sbjct: 133 AMAVTEEA--GAFAADAWIAARDVAILTLLYGCGLRISEALSL-PGDALGDATARSMPVA 189 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 GKG K R+VPLLP+V +A EY CP+ L + L FRG RG PL P + QR + +LR Sbjct: 190 GKGGKTRLVPLLPAVLEAAAEYRRRCPYPLTADNAL--FRGARGGPLQPQIVQRAMARLR 247 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 LGLP S T H LRHSFATHLL+ GGDLR+IQ +LGH LSTTQ YT V+ +M Sbjct: 248 GVLGLPDSATPHALRHSFATHLLAGGGDLRTIQDLLGHASLSTTQNYTAVDQAR----LM 303 Query: 312 EIYDQTHP 319 IY+ HP Sbjct: 304 SIYEDAHP 311 >gi|99082221|ref|YP_614375.1| site-specific tyrosine recombinase XerC [Ruegeria sp. TM1040] gi|99038501|gb|ABF65113.1| phage integrase [Ruegeria sp. TM1040] Length = 311 Score = 250 bits (639), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 129/313 (41%), Positives = 187/313 (59%), Gaps = 9/313 (2%) Query: 7 PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66 P ++S Q WL L G + TL +Y D +FL F++ + + +RQ+ Sbjct: 6 PTLISPAARDALQRWLDGLGALEGAADNTLAAYRGDVVEFLSFMSLHFGAPQGLGALRQI 65 Query: 67 SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126 + ++RA+++ R+ G RSL R LS +K F +L KR+ + +L+ R K LP Sbjct: 66 TTADMRAWMASARSSGTGARSLARKLSAVKKFYGWLAKREGFEPTAVLSTRAPKFQKKLP 125 Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 R L++ A ++D V L + + W+ AR+ A++ LLYGCGLRISEAL L ++ + Sbjct: 126 RPLDQDAARAMIDTVELQS--QKDWVSARDVAVVTLLYGCGLRISEALGLLGKDA-PLPA 182 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 TLRI+GKG K R+VP+LP+ ++A+ Y LCP + LPLFRG+RG L+ + Q Sbjct: 183 TLRIKGKGGKERVVPVLPAAQQAVERYLALCPHPKEAH--LPLFRGVRGGALHARMIQGV 240 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 + RR LGLP + T H LRHSFATHLL GGDLR+IQ +LGH LSTTQ YT V++ + Sbjct: 241 MAGARRQLGLPATATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTAVDTAH- 299 Query: 307 GDWMMEIYDQTHP 319 +ME+Y + HP Sbjct: 300 ---LMEVYARAHP 309 >gi|218682269|ref|ZP_03529870.1| site-specific tyrosine recombinase XerC [Rhizobium etli CIAT 894] Length = 248 Score = 249 bits (637), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 121/251 (48%), Positives = 169/251 (67%), Gaps = 8/251 (3%) Query: 69 TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 + RAF++ RR Q G RSL R+L+G++S L++L+K+ + + +R+ K+ SLP+ Sbjct: 4 ADFRAFLAARRKQGSGARSLGRNLAGLRSLLRHLEKKGLVNAAGAGAIRSPKQPKSLPKP 63 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 L++ QA+T+V N H+ WI AR++A++ LLYGCGLRISEAL L P ++ +TL Sbjct: 64 LSDTQAITVVSNEA--QLHDEPWIAARDAAVMTLLYGCGLRISEALDLVPADLQKGATTL 121 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 RI GKG+K R+VPLL V A+ +Y LCP DL PLFRG RG L P + QR ++ Sbjct: 122 RITGKGNKTRLVPLLSVVFDAVEKYRTLCPHDLE--AAEPLFRGARGGKLQPAIIQRAMQ 179 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 +LR GLP + T H LRHSFATHLL+ GGDLR+IQ +LGH LSTTQ+YT V++ Sbjct: 180 KLRSAFGLPETATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDASR--- 236 Query: 309 WMMEIYDQTHP 319 ++E+YD+ HP Sbjct: 237 -LLEVYDRAHP 246 >gi|255264826|ref|ZP_05344168.1| site-specific tyrosine recombinase XerC [Thalassiobium sp. R2A62] gi|255107161|gb|EET49835.1| site-specific tyrosine recombinase XerC [Thalassiobium sp. R2A62] Length = 304 Score = 249 bits (637), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 127/311 (40%), Positives = 183/311 (58%), Gaps = 9/311 (2%) Query: 9 IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68 ++S L + WL + G S+ T ++Y+ D FL F+ + + I Q+ Sbjct: 1 MISPALRDALEGWLASTAALNGTSENTTKAYQADVAGFLAFMTVHHGGAQGLGPISQICV 60 Query: 69 TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 +++RA+++ R + + RSL RSLS +K+F + +R+ + +L+ R K LPR Sbjct: 61 SDMRAWMASERGRGVAARSLARSLSAVKTFYCWFAEREGFEPTAVLSTRAPKFQKKLPRP 120 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 L E A ++D V L + W+ AR+ A++ LLYGCGLRISEAL L +++ Q TL Sbjct: 121 LAEDAARAMIDTVELQAAE--PWVAARDMAVMTLLYGCGLRISEALGLCGRDVPLPQ-TL 177 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 RI GKG K R+VP++P A+ Y CP+ + + PLFRG+RG LNP Q+ Sbjct: 178 RILGKGGKERVVPVIPQACDAVAAYLRQCPYPVEPDA--PLFRGVRGGALNPRAIQKVTE 235 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 R LGLP + T H +RHSFATHLLS GGDLR+IQ +LGH LSTTQ YT V++ Sbjct: 236 AARLQLGLPATATPHAMRHSFATHLLSAGGDLRAIQELLGHASLSTTQTYTAVDTAR--- 292 Query: 309 WMMEIYDQTHP 319 +ME+YD+THP Sbjct: 293 -LMEVYDRTHP 302 >gi|146277269|ref|YP_001167428.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides ATCC 17025] gi|145555510|gb|ABP70123.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] Length = 306 Score = 249 bits (636), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 128/301 (42%), Positives = 180/301 (59%), Gaps = 10/301 (3%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + WL + + G S T+++Y D +L FLA + E + + + + ++RA+++ Sbjct: 14 EAWLTHQRVIEGASPHTIRAYAADVAGWLAFLAGHLGEGYGLPALASVPHADLRAWMAHE 73 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + +G RSL RSLS ++ F +L +R+ + +L+ R K LPR L+E A L+ Sbjct: 74 RARGLGARSLARSLSAVRQFTGWLAEREGVDATAVLSARGPKFRRKLPRPLSEGDAKALL 133 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 V + + WI AR+ A++ LLYGCGLRISEAL L P LRI GKG K R Sbjct: 134 LTVAEDGAED--WIRARDLAVVTLLYGCGLRISEALGL-PATAHPLPEVLRILGKGSKER 190 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +VP +P+ R+A+ Y LCPFDL PLFRG RG LNP + + + + R LGLP Sbjct: 191 LVPAIPAAREAVARYAALCPFDLTSG---PLFRGARGGALNPRLVAKVMERARATLGLPP 247 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + T H LRHSFATHLL+ GGDLR+IQ +LGH LSTTQ+YT V+ G +ME+Y + H Sbjct: 248 TATPHALRHSFATHLLNAGGDLRAIQELLGHASLSTTQVYTAVD----GARLMEVYARAH 303 Query: 319 P 319 P Sbjct: 304 P 304 >gi|254454192|ref|ZP_05067629.1| tyrosine recombinase XerC [Octadecabacter antarcticus 238] gi|198268598|gb|EDY92868.1| tyrosine recombinase XerC [Octadecabacter antarcticus 238] Length = 301 Score = 248 bits (634), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 129/300 (43%), Positives = 180/300 (60%), Gaps = 9/300 (3%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +WL + G + T+ +Y+ D FL F+ Y E + I +++ +++RA+++ R Sbjct: 7 DWLDHQRALNGAAANTITAYQTDLLGFLNFMTTYHGEAQGLGPISRITVSDMRAWMASER 66 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + + RSL RSLS +KSF ++L R+ + +L+ R+ K LPR L A ++D Sbjct: 67 GRGVAARSLARSLSAVKSFYRWLADREGFEPTAVLSTRSPKFQKKLPRPLAVDGARAMID 126 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 V L WI AR+ A++ LLYGCGLRISEAL LTP ++ +TLRI GKG K R+ Sbjct: 127 TVELQA--REPWIAARDVAVVTLLYGCGLRISEALGLTPTDV-PLPATLRIIGKGGKERL 183 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 VP++P+ R A+ Y D CP L + P+FRG RG PL P Q + R LGLP + Sbjct: 184 VPVIPAARAAVNAYLDACPHQLTAD--QPIFRGSRGGPLYPKAIQNVMASSRMQLGLPAT 241 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T H +RHSFATHLL+ GGDLRSIQ +LGH LSTTQ YT V++ +ME+YD HP Sbjct: 242 ATPHAMRHSFATHLLNAGGDLRSIQELLGHASLSTTQSYTAVDTAR----LMEVYDAAHP 297 >gi|126728166|ref|ZP_01743982.1| site-specific tyrosine recombinase XerC [Sagittula stellata E-37] gi|126711131|gb|EBA10181.1| site-specific tyrosine recombinase XerC [Sagittula stellata E-37] Length = 308 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 128/300 (42%), Positives = 186/300 (62%), Gaps = 9/300 (3%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +WL + + R S T+ +Y D F+ FL + E + + +++ +++RA+++ R Sbjct: 15 DWLDHAKALREASDNTITAYRADVIDFIAFLTQHHAEPQGLAPLARVTTSDMRAWMAHLR 74 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 +IG RS+ R LS +K+F ++L R+ + +L R K LPR L+E+ A ++D Sbjct: 75 RTEIGPRSMARKLSAVKTFYRWLADREGFEPTAVLATRAPKFQKKLPRPLSEEAARAMID 134 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 V + ++ T W AR++A++ LLYGCGLRISEALSLT +++ S LRI GKG+K R+ Sbjct: 135 TVEIQST--TSWQGARDAAVVTLLYGCGLRISEALSLTGRHLPLTDS-LRIVGKGNKERV 191 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 VP+LP R+A+ Y LCPF ++ L FRG RG PLNP + + Q R LGLP + Sbjct: 192 VPVLPVARRAVETYLSLCPFPPERDVAL--FRGARGGPLNPRLIAKVTEQARMQLGLPAT 249 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T H +RHSFATHLL GGDLR+IQ +LGH LSTTQ YT V+ + +M+IYD HP Sbjct: 250 ATPHAMRHSFATHLLHAGGDLRAIQELLGHASLSTTQAYTAVDQVH----LMKIYDACHP 305 >gi|192288610|ref|YP_001989215.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris TIE-1] gi|192282359|gb|ACE98739.1| integrase family protein [Rhodopseudomonas palustris TIE-1] Length = 323 Score = 248 bits (632), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 131/312 (41%), Positives = 188/312 (60%), Gaps = 8/312 (2%) Query: 10 VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69 + +L E WL +L ER LS TL++Y D RQFL FLA + ++T+ +L T Sbjct: 16 AAADLTAEMTKWLSHLRAERRLSGKTLEAYARDVRQFLQFLAEHWGGEVTLGRFARLEAT 75 Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 ++RAF++ RR +I RSL R+L+G++SF ++L++ + ++R K SLP+ L Sbjct: 76 DVRAFMAARRADEIAGRSLMRALAGMRSFGRFLEREGKGRVGALASVRAPKIKKSLPKPL 135 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQST 187 A L D W+ R++A++ LLYG GLRISEAL L +++ T Sbjct: 136 PIAAAKRLADADERAGEERETWVLIRDAAVMALLYGSGLRISEALGLKRRDVPAAGKGDT 195 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 L + GKG+K R+VP+L +V I EY CP+ NL P+F G RG PL+P + Q + Sbjct: 196 LIVHGKGNKTRMVPVLQNVLAQIAEYAAACPY--NLPPDGPMFVGARGGPLSPRIIQLAM 253 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 +LR LGLP S T H LRHSFATHLLS GGDLR+IQ +LGH LSTTQ+YT ++++ Sbjct: 254 ERLRGGLGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYTGIDTER-- 311 Query: 308 DWMMEIYDQTHP 319 ++E+Y+ HP Sbjct: 312 --LLEVYNSAHP 321 >gi|260425750|ref|ZP_05779730.1| site-specific recombinase, phage integrase family [Citreicella sp. SE45] gi|260423690|gb|EEX16940.1| site-specific recombinase, phage integrase family [Citreicella sp. SE45] Length = 308 Score = 248 bits (632), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 123/301 (40%), Positives = 187/301 (62%), Gaps = 9/301 (2%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +NWL + +G ++ T+ +Y D +F++FL + E ++ + +++ ++RAF++ Sbjct: 14 ENWLASARALKGAAENTITAYRADVLEFIVFLTTHHAEPQGLKPLARVTTPDMRAFMAHL 73 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R Q RS+ R LS +KSF ++L +R+ + ++ R K LPR L+E A ++ Sbjct: 74 RGQGAAPRSMARKLSAVKSFYRWLAEREGFEPTAVIMARAPKFQKKLPRPLDESAARAMI 133 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + V + ++ WI AR++A++ LLYGCGLRISEAL L ++ +S LRI GKG K R Sbjct: 134 ETVEMQSA--DSWIGARDAAVVTLLYGCGLRISEALGLRGRDWPMGES-LRITGKGGKER 190 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 IVP+LP R A+ Y LCPF+ + P+FRG RG LNP + Q+ + R LGLP Sbjct: 191 IVPVLPVARDAVGIYLQLCPFEPE--PEAPIFRGARGGALNPRLIQKVTEKARLQLGLPA 248 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + T H +RHSFATHLL+ GGDLR+IQ +LGH LSTTQ YT V+ + +M++Y+ +H Sbjct: 249 TATPHAMRHSFATHLLAAGGDLRAIQELLGHASLSTTQAYTAVDEVH----LMKVYEASH 304 Query: 319 P 319 P Sbjct: 305 P 305 >gi|294678724|ref|YP_003579339.1| tyrosine recombinase XerC [Rhodobacter capsulatus SB 1003] gi|294477544|gb|ADE86932.1| tyrosine recombinase XerC [Rhodobacter capsulatus SB 1003] Length = 307 Score = 248 bits (632), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 122/299 (40%), Positives = 187/299 (62%), Gaps = 9/299 (3%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W+ +L G + TL +Y D FL FL + E + + + L +++RA+++ R Sbjct: 16 WISHLRAIDGAASHTLTAYSSDVAGFLAFLHRHRGESLGLAQLAGLGQSDMRAWMAHERN 75 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + RSL R+LS +K+F+++L R+ +++L+ + K LPR L+ + A +++ Sbjct: 76 RGLSGRSLARALSAVKNFIRWLAAREGFDATHVLSAKAPKYQRKLPRPLSVEAAAEVLEQ 135 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 V + + WI AR+SA++ L+YGCGLR+SEAL+L + + LRI+GKGDK R+V Sbjct: 136 VEVQA--QEPWIAARDSAVMTLMYGCGLRVSEALALKGSDAPLPE-VLRIRGKGDKERLV 192 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 P+LP+ RKA+ +Y LCPF ++ PLFRG RG PLNP + + + + R LGLP + Sbjct: 193 PVLPAARKAVADYLRLCPFPMSRYE--PLFRGARGGPLNPRLVAKSMERARLGLGLPATA 250 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T H LRHSFATHLL+ GGDLR+IQ +LGH L+TTQ+YT V+ +M++Y HP Sbjct: 251 TPHALRHSFATHLLAEGGDLRAIQELLGHASLATTQVYTAVDQAR----LMQVYQAAHP 305 >gi|89068699|ref|ZP_01156085.1| tyrosine recombinase [Oceanicola granulosus HTCC2516] gi|89045662|gb|EAR51724.1| tyrosine recombinase [Oceanicola granulosus HTCC2516] Length = 307 Score = 247 bits (631), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 127/311 (40%), Positives = 184/311 (59%), Gaps = 9/311 (2%) Query: 9 IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68 ++S L + WL + RG S+ T+ +Y D FL F+A + + + + ++ Sbjct: 4 LISPALTDAAEAWLAHARALRGASEKTINAYRTDVLGFLAFMAEHHGGQQGLAPLARVGV 63 Query: 69 TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 +++RA+++ R + + RSL R+LS +K F +++ +R+ + +L+ R+ K LPR Sbjct: 64 SDMRAWMAHERGRGVSARSLARALSAVKGFYRWIAEREGFEPTAVLSTRSPKFQKKLPRP 123 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 L A ++D V L W+ AR+ A++ LLYGCGLRISEAL LT + + + Sbjct: 124 LAVDAAQAMIDRVELQA--REGWVAARDVAVVTLLYGCGLRISEALGLTGAAVPLPE-VV 180 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 RI GKG K R+VP++ R A+ Y LCP L + LPLFRG+RG LNP Q+ + Sbjct: 181 RIVGKGGKERVVPVIAPARDAVDAYARLCPHPLEPH--LPLFRGVRGGALNPRAIQKVME 238 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 Q R LGLP + T H LRHSFATHLL GGDLRSIQ +LGH LSTTQ YT V++ Sbjct: 239 QARLQLGLPATATPHALRHSFATHLLGAGGDLRSIQELLGHASLSTTQAYTAVDTAR--- 295 Query: 309 WMMEIYDQTHP 319 +ME+YD+ HP Sbjct: 296 -LMEVYDKAHP 305 >gi|316931849|ref|YP_004106831.1| integrase family protein [Rhodopseudomonas palustris DX-1] gi|315599563|gb|ADU42098.1| integrase family protein [Rhodopseudomonas palustris DX-1] Length = 323 Score = 247 bits (630), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 131/312 (41%), Positives = 188/312 (60%), Gaps = 8/312 (2%) Query: 10 VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69 + +L E WL +L ER LS TL++Y D RQFL FLA + ++T+ +L T Sbjct: 16 AAADLTAEMAKWLSHLRAERRLSGKTLEAYARDVRQFLQFLAGHWGGEVTLGRFARLEAT 75 Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 ++RAF++ RR I RSL R+L+G++SF ++L++ + ++R K SLP+ L Sbjct: 76 DVRAFMAARRADDIAGRSLMRALAGLRSFGRFLEREGKGRVGALASVRAPKIRKSLPKPL 135 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQST 187 A L D W+ R++A++ LLYG GLRISEAL L +++ T Sbjct: 136 PIAAAKRLADADERAGEERETWVLIRDAAVMALLYGSGLRISEALGLKRRDVPAPGKGDT 195 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 L + GKG+K R+VP+L +V + I EY CP+ NL P+F G RG PL+P + Q + Sbjct: 196 LIVHGKGNKTRMVPVLQNVLEQIAEYAAACPY--NLPPDGPMFVGARGGPLSPRIIQLAM 253 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 +LR LGLP S T H LRHSFATHLLS GGDLR+IQ +LGH LSTTQ+YT ++++ Sbjct: 254 ERLRGGLGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYTGIDTER-- 311 Query: 308 DWMMEIYDQTHP 319 ++E+Y+ HP Sbjct: 312 --LLEVYNSAHP 321 >gi|39933259|ref|NP_945535.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris CGA009] gi|39652884|emb|CAE25626.1| putative site-specific recombinase, INTEGRASE/RECOMBINASE RIPX (xerC) [Rhodopseudomonas palustris CGA009] Length = 371 Score = 247 bits (630), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 131/313 (41%), Positives = 188/313 (60%), Gaps = 8/313 (2%) Query: 9 IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68 + +L E WL +L ER LS TL++Y D RQFL FLA + ++T+ +L Sbjct: 63 CAAADLTAEMTKWLSHLRAERRLSGKTLEAYARDVRQFLQFLAGHWGGEVTLGRFARLEA 122 Query: 69 TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 T++RAF++ RR +I RSL R+L+G++SF ++L++ + ++R K SLP+ Sbjct: 123 TDVRAFMAARRADEIAGRSLMRALAGMRSFGRFLEREGKGRVGALASVRAPKIKKSLPKP 182 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQS 186 L A L D W+ R++A++ LLYG GLRISEAL L +++ Sbjct: 183 LPIAAAKRLADADERAGEERETWVLIRDAAVMALLYGSGLRISEALGLKRRDVPAPGKGD 242 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 TL + GKG+K R+VP+L +V I EY CP+ NL P+F G RG PL+P + Q Sbjct: 243 TLIVHGKGNKTRMVPVLQNVLAQIAEYAAACPY--NLPPDGPMFVGARGGPLSPRIIQLA 300 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 + +LR LGLP S T H LRHSFATHLLS GGDLR+IQ +LGH LSTTQ+YT ++++ Sbjct: 301 MERLRGGLGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYTGIDTER- 359 Query: 307 GDWMMEIYDQTHP 319 ++E+Y+ HP Sbjct: 360 ---LLEVYNSAHP 369 >gi|254475428|ref|ZP_05088814.1| tyrosine recombinase XerC [Ruegeria sp. R11] gi|214029671|gb|EEB70506.1| tyrosine recombinase XerC [Ruegeria sp. R11] Length = 305 Score = 246 bits (629), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 126/301 (41%), Positives = 182/301 (60%), Gaps = 9/301 (2%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++WL +L R + TL +Y D FL F+ + + + +++ ++RA+++ Sbjct: 12 EHWLAHLGGLRDAADNTLTAYRGDVVDFLAFMTQHFGSPQGLGALAEITTGDMRAWMAAT 71 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R G RSL R LS +KSF +L +R+ + +L+ R+ K LPR L E A ++ Sbjct: 72 RAGGTGARSLARKLSAVKSFYTWLAERQGFEATAVLSARSPKFQKKLPRPLAEDAAKAMI 131 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + V ++ + W+ AR+ A++ +LYGCGLRISEAL LT + + LRI GKG K R Sbjct: 132 ETVEYQST--SDWVAARDVAVVTVLYGCGLRISEALGLTGGD-APLPAVLRITGKGGKER 188 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 IVP+LP+ R A+ Y DLCP N PLFRG+RG PLN + ++ + Q R LGLP Sbjct: 189 IVPVLPAARAAVDRYLDLCPHPQETNA--PLFRGVRGGPLNASIIRKAMAQARAQLGLPA 246 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + T H LRHSFATHLL GGDLR+IQ +LGH LSTTQ YT V++ + +ME+Y++ H Sbjct: 247 TATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTAVDTAH----LMEVYNRAH 302 Query: 319 P 319 P Sbjct: 303 P 303 >gi|163733501|ref|ZP_02140944.1| site-specific tyrosine recombinase XerC [Roseobacter litoralis Och 149] gi|161393289|gb|EDQ17615.1| site-specific tyrosine recombinase XerC [Roseobacter litoralis Och 149] Length = 306 Score = 246 bits (628), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 127/301 (42%), Positives = 181/301 (60%), Gaps = 9/301 (2%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 QNWL + +G ++ TL +Y+ D FL F+ + + + +S T++RA++++ Sbjct: 13 QNWLAHQRAIKGAAENTLIAYQGDVIDFLSFITAHKGAPQGLGALADISVTDMRAWMAQT 72 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + RSL R LS +K+F K+L R+ + +L+ R K LPR L A L+ Sbjct: 73 RETGVAARSLARKLSAVKAFYKWLALREGFEPTAVLSTRAPKFQKKLPRPLAPDAARNLI 132 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + + + H W+ AR+ A++ LL+GCGLRISEALSL +TLRI GKG K R Sbjct: 133 DAIEIQSQHP--WVCARDVAVVTLLWGCGLRISEALSLA-AADAPLPATLRITGKGGKER 189 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 IVP+LP+ R A+ Y +CP + PLFR +RG PL PG Q+ + R LGLP Sbjct: 190 IVPVLPAARDAVDAYVRMCPHPQT--AEAPLFRAVRGGPLRPGTIQKVMAAARMQLGLPA 247 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + T H +RHSFATHLL+ GGDLR+IQ +LGH LSTTQ YT V++ +M++YD+TH Sbjct: 248 TATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYTAVDTVR----LMKVYDRTH 303 Query: 319 P 319 P Sbjct: 304 P 304 >gi|299135445|ref|ZP_07028635.1| tyrosine recombinase XerC [Afipia sp. 1NLS2] gi|298589853|gb|EFI50058.1| tyrosine recombinase XerC [Afipia sp. 1NLS2] Length = 327 Score = 245 bits (625), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 128/309 (41%), Positives = 190/309 (61%), Gaps = 8/309 (2%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 ++ E WL +L+ ER LS TL++YE D RQ L+FLA + + +++ + T++R Sbjct: 23 DIQAEAARWLAHLKSERRLSPKTLEAYERDLRQCLMFLAEHWGKPASLKAFAAIEATDVR 82 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 AF++ RR IG RSL R+L+G++SF ++L++ + +R K S +LP+ L Sbjct: 83 AFMAARRADDIGGRSLMRALAGLRSFGRFLEREGKGKVGALSAIRAPKISKTLPKPLAVS 142 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRI 190 A L + + WI AR++A++ LLYG GLRISEAL L ++I + + + Sbjct: 143 AARNLTEADIRAGEDRPPWIWARDAAVMALLYGSGLRISEALGLNRRDIPEPGRGDVITV 202 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 GKG+K R+VP+L V +A+ +Y CP+ L + P+F G RG PL+P + Q + +L Sbjct: 203 TGKGNKTRMVPVLQGVLEAVQDYIAQCPYP--LAPEKPVFVGARGGPLSPRIIQLTMERL 260 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 R LGLP S T H LRHSFATHLLS GGDLR+IQ +LGH LSTTQIYT ++++ + Sbjct: 261 RGALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDAER----L 316 Query: 311 MEIYDQTHP 319 M++Y HP Sbjct: 317 MDVYQSAHP 325 >gi|221640000|ref|YP_002526262.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides KD131] gi|221160781|gb|ACM01761.1| Phage integrase family protein [Rhodobacter sphaeroides KD131] Length = 306 Score = 244 bits (624), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 132/301 (43%), Positives = 180/301 (59%), Gaps = 10/301 (3%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + WL + G S T+++Y D +L FLA + E ++ + + + ++RA+++ Sbjct: 14 EAWLTHQRAIEGASAHTIRAYTADVTGWLAFLAGHLGEGYGLKRLASVPHADLRAWMAHE 73 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + +G RSL RSLS ++ F +L +R+ + +L+ R K LPR L+E A L+ Sbjct: 74 RARGLGARSLARSLSAVRQFTGWLAEREGVDATAVLSARGPKFRRKLPRPLSEADAKALL 133 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 V + + WI AR+ A++ LLYGCGLRISEAL L P LRI GKGDK R Sbjct: 134 STVAEDAAED--WIRARDLAVVTLLYGCGLRISEALGL-PGTAHPLPEVLRITGKGDKER 190 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +VP LP R A+ Y LCPFDL + LFRG RG PLNP + R + + R LGLP Sbjct: 191 LVPSLPVARAAVARYAALCPFDLGSGV---LFRGARGGPLNPRLVARTMERARATLGLPP 247 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + T H LRHSFATHLL+ GGDLRSIQ +LGH LSTTQ+YT V+ G +ME+Y + H Sbjct: 248 TATPHALRHSFATHLLNAGGDLRSIQELLGHASLSTTQVYTAVD----GARLMEVYAKAH 303 Query: 319 P 319 P Sbjct: 304 P 304 >gi|126733327|ref|ZP_01749074.1| tyrosine recombinase [Roseobacter sp. CCS2] gi|126716193|gb|EBA13057.1| tyrosine recombinase [Roseobacter sp. CCS2] Length = 304 Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 124/299 (41%), Positives = 183/299 (61%), Gaps = 9/299 (3%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL G ++ TL++Y+ D FL F+ Y E + I +++ ++RA+++ R Sbjct: 13 WLAGQRALAGTAENTLKAYQTDVMGFLAFMTQYNGESQGLAPIARVTVRDMRAWMAHERG 72 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + IG RSL RSLS +KSF ++L +R+ + +L+ R K LPR L A ++D Sbjct: 73 RGIGARSLARSLSAVKSFYRWLAEREGFEPTAVLSTRAPKFQRKLPRPLEVNAASAMIDT 132 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 V L + W+ AR++A++ LLYGCGLRISEAL LT ++ + LRI GKG K RIV Sbjct: 133 VELQANE--PWVAARDAAVVTLLYGCGLRISEALGLTSVDVPLPE-VLRIVGKGGKERIV 189 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 P++ R+A+ Y LCP+ + + P+FR +RG L+P Q+ + Q R LGLP + Sbjct: 190 PVIAEAREAVATYVRLCPYPVAQD--QPIFRAVRGGILSPRAIQKVMEQARLQLGLPATA 247 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T H +RHSFATHLL+ GGDLR+IQ +LGH LSTTQ YT V++ + +M +Y++ HP Sbjct: 248 TPHAMRHSFATHLLAAGGDLRAIQELLGHASLSTTQAYTAVDAAH----LMSVYEKAHP 302 >gi|77464133|ref|YP_353637.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides 2.4.1] gi|126462976|ref|YP_001044090.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides ATCC 17029] gi|77388551|gb|ABA79736.1| putative site-specific recombinase [Rhodobacter sphaeroides 2.4.1] gi|126104640|gb|ABN77318.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029] Length = 306 Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 132/301 (43%), Positives = 180/301 (59%), Gaps = 10/301 (3%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + WL + G S T+++Y D +L FLA + E ++ + + + ++RA+++ Sbjct: 14 EAWLTHQRAIEGASAHTIRAYTADVTGWLAFLAGHLGEGYGLKRLASVPHADLRAWMAHE 73 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + +G RSL RSLS ++ F +L +R+ + +L+ R K LPR L+E A L+ Sbjct: 74 RARGLGARSLARSLSAVRQFTGWLAEREGVDATAVLSARGPKFRRKLPRPLSEADAKALL 133 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 V + + WI AR+ A++ LLYGCGLRISEAL L P LRI GKGDK R Sbjct: 134 STVAEDAAED--WIRARDLAVVTLLYGCGLRISEALGL-PGTAHPLPEVLRITGKGDKER 190 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +VP LP R A+ Y LCPFDL + LFRG RG PLNP + R + + R LGLP Sbjct: 191 LVPSLPVARAAVARYAALCPFDLASGV---LFRGARGGPLNPRLVARTMERARATLGLPP 247 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + T H LRHSFATHLL+ GGDLRSIQ +LGH LSTTQ+YT V+ G +ME+Y + H Sbjct: 248 TATPHALRHSFATHLLNAGGDLRSIQELLGHASLSTTQVYTAVD----GARLMEVYAKAH 303 Query: 319 P 319 P Sbjct: 304 P 304 >gi|209883739|ref|YP_002287596.1| tyrosine recombinase XerC [Oligotropha carboxidovorans OM5] gi|209871935|gb|ACI91731.1| tyrosine recombinase XerC [Oligotropha carboxidovorans OM5] Length = 355 Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 129/316 (40%), Positives = 194/316 (61%), Gaps = 10/316 (3%) Query: 6 LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65 LP F+ E WL +L+ ER LS TL++YE D RQ + FLA + + +++ + Sbjct: 46 LPATGDFQ--AEVARWLAHLKSERRLSPKTLEAYERDLRQCIGFLAEHWGKPVSLASFAG 103 Query: 66 LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 + T++RAF++ RR+ + RSL R+L+G++SF ++L++ + +R K S SL Sbjct: 104 IEATDVRAFMASRRSHDVAGRSLMRALAGLRSFGRFLEREGKGKVGALSAIRAPKISKSL 163 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD- 184 P+ L A L + + WI AR++A++ LLYG GLRISEAL L ++I + Sbjct: 164 PKPLAVSAARHLTEAEIRAGEDRPPWIWARDAAVMALLYGSGLRISEALGLARRDIPEPG 223 Query: 185 -QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 + + GKG+K R+VP+L +V A+ +Y CP++L+ + P+F G RG PL+P + Sbjct: 224 RGDVITVTGKGNKTRMVPVLQAVLDAVQDYIAQCPYELSPD--KPVFVGARGGPLSPRII 281 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 Q + +LR LGLP S T H LRHSFATHLLS GGDLR+IQ +LGH LSTTQIYT +++ Sbjct: 282 QLTMERLRGALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDA 341 Query: 304 KNGGDWMMEIYDQTHP 319 + +M++Y HP Sbjct: 342 ER----LMDVYQSAHP 353 >gi|13473627|ref|NP_105195.1| site-specific tyrosine recombinase XerC [Mesorhizobium loti MAFF303099] gi|34222994|sp|Q98ED9|XERC_RHILO RecName: Full=Tyrosine recombinase xerC gi|14024377|dbj|BAB50981.1| site-specific recombinase, integrase/recombinase RipX; XerC [Mesorhizobium loti MAFF303099] Length = 312 Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 139/308 (45%), Positives = 190/308 (61%), Gaps = 9/308 (2%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L R++WL+ L ER LS T+++YE DTRQFL FL + I I L ++R Sbjct: 11 DLQAARESWLKMLARERRLSPETVEAYERDTRQFLHFLTGHCGGSPGISDIANLRPADLR 70 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F++ RR G R+L R L+GI+S L++L++R + + +R ++ SLP+ L Sbjct: 71 GFLAARRNAGAGARTLGRGLAGIRSLLRFLERRGLVNAAGAAALRAPRQPKSLPKPLTAS 130 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-LRIQ 191 A +V + E WI ARN+A+L LLYG GLRISEAL L ++ + T LR+ Sbjct: 131 DAKQVVS--VEGQLAEEPWIAARNAAVLTLLYGSGLRISEALGLAGADLASETDTVLRVT 188 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 GKG K R+VP+LP +AI EY LCP+ +L+ + LFRG RG PLNP + QR + +LR Sbjct: 189 GKGGKTRLVPVLPVALRAIAEYRRLCPY--HLDPKGLLFRGARGGPLNPAIIQRDMAKLR 246 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 L LP + T H LRHSFATHLL GGDLR+IQ +LGH LSTTQIYT V++ ++ Sbjct: 247 SALNLPDTATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQIYTGVDTAR----LL 302 Query: 312 EIYDQTHP 319 EIY+ HP Sbjct: 303 EIYESAHP 310 >gi|114764172|ref|ZP_01443410.1| tyrosine recombinase [Pelagibaca bermudensis HTCC2601] gi|114543324|gb|EAU46340.1| tyrosine recombinase [Roseovarius sp. HTCC2601] Length = 308 Score = 243 bits (621), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 124/301 (41%), Positives = 185/301 (61%), Gaps = 9/301 (2%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++WL +G S+ T+ +Y D +F++FL + E + + +++ ++RAF++ Sbjct: 14 ESWLTAARALKGNSENTITAYRADVLEFIVFLTSHHAEPQGLAPLARVTTPDMRAFLAHL 73 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R Q +G R++ R LS +KSF ++L + + + ++ R K LPR L E A ++ Sbjct: 74 RGQGVGSRTMARKLSAVKSFYRWLAELEGFEPTAVMMARAPKFQKKLPRPLAEDAAKAMI 133 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D V + + WI AR++A++ LLYGCGLRISEAL L +++ +S LRI GKG K R Sbjct: 134 DTVEMQAAD--SWIGARDAAVVTLLYGCGLRISEALGLRGRDLPLGES-LRIVGKGGKER 190 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 IVP+LP R+A+ Y LCP+D + P+FRG RG LNP + Q+ R LGLP Sbjct: 191 IVPVLPIARRALDTYLRLCPYDPEPDA--PVFRGKRGGALNPRLIQKVTEAARLQLGLPA 248 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + T H +RHSFATHLL+ GGDLR+IQ +LGH LSTTQ YT+V+ + +M++Y TH Sbjct: 249 TATPHAMRHSFATHLLAAGGDLRAIQELLGHASLSTTQAYTSVDEVH----LMKVYAATH 304 Query: 319 P 319 P Sbjct: 305 P 305 >gi|259417214|ref|ZP_05741133.1| site-specific tyrosine recombinase XerC [Silicibacter sp. TrichCH4B] gi|259346120|gb|EEW57934.1| site-specific tyrosine recombinase XerC [Silicibacter sp. TrichCH4B] Length = 311 Score = 243 bits (621), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 127/313 (40%), Positives = 185/313 (59%), Gaps = 9/313 (2%) Query: 7 PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66 P ++S Q WL L G + T +Y D FL F++ + + + Q+ Sbjct: 6 PTLISPAARDALQIWLDGLGALEGAADNTRTAYRGDVVDFLAFMSLHFGGPQGLGALSQI 65 Query: 67 SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126 + ++RA+++ R G RSL R LS +K F +L KR+ + +L+ R+ K LP Sbjct: 66 TTADMRAWMASSRNAGTGARSLARKLSAVKKFYGWLAKREGFEPTAVLSTRSPKFQKKLP 125 Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 R L++ A ++D V L + + W+ AR+ A++ LLYGCGLRISEAL L ++ + Sbjct: 126 RPLDKDAARAMIDTVELQSQQD--WVAARDVAVVTLLYGCGLRISEALGLLGKDA-PLPA 182 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 TLRI+GKG K RIVP+LP+ ++A+ Y LCP + LPLFRG+RG L+ + Q Sbjct: 183 TLRIKGKGGKERIVPVLPAAQQAVSRYLKLCPHPQEAS--LPLFRGVRGGGLHARMIQGV 240 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 + RR LGLP + T H +RHSFATHLL GGDLR+IQ +LGH LSTTQ YT V++ + Sbjct: 241 VADARRQLGLPATATPHAMRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTAVDTAH- 299 Query: 307 GDWMMEIYDQTHP 319 +ME+Y ++HP Sbjct: 300 ---LMEVYARSHP 309 >gi|56697962|ref|YP_168333.1| site-specific tyrosine recombinase XerC [Ruegeria pomeroyi DSS-3] gi|56679699|gb|AAV96365.1| tyrosine recombinase XerC [Ruegeria pomeroyi DSS-3] Length = 306 Score = 243 bits (619), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 126/301 (41%), Positives = 182/301 (60%), Gaps = 9/301 (2%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q WL G ++ T+ +Y D +F+ F+ + + + ++ ++RA++++ Sbjct: 13 QLWLDTQRALAGRAENTITAYRTDVVEFMSFMTLHFGATQGLAPLARIGVPDMRAWMAQM 72 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R IG RSL R LS +KSF ++L +R+ + +L+ R K LPR L E A ++ Sbjct: 73 RADGIGARSLARKLSAVKSFYRWLAEREGFEPTAVLSTRAPKFQRKLPRPLAEDAARAMI 132 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D V L +S WI AR+ A++ LLYGCGLRISEALSLT +TLRI+GKG K R Sbjct: 133 DTVELQSSK--PWIAARDMAVVTLLYGCGLRISEALSLT-GRAAPLPATLRIRGKGGKER 189 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +VP++P R A+ Y LCP+ + + PLFRG RG PLN Q + + R LGLP Sbjct: 190 LVPVIPVARAAVDTYLRLCPWPVE--PETPLFRGARGGPLNARSIQAVMAKARMQLGLPA 247 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + T H +RHSFATHLL GGDLR+IQ +LGH LSTTQ YT V++ + +M++Y+++H Sbjct: 248 TATPHAMRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTAVDTAH----LMDVYNRSH 303 Query: 319 P 319 P Sbjct: 304 P 304 >gi|254440821|ref|ZP_05054314.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] gi|198250899|gb|EDY75214.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] Length = 319 Score = 243 bits (619), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 125/311 (40%), Positives = 184/311 (59%), Gaps = 9/311 (2%) Query: 9 IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68 ++S + +WL + G + T+ +Y+ D FL F+ Y + I +++ Sbjct: 1 MISPAMSSALGDWLDHKRALNGAASNTITAYQTDLLGFLNFMTSYYSGAQGLGPISRITV 60 Query: 69 TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 +++RA+++ R++ + RSL RSLS +KSF ++L R+ + +L+ R+ K LPR Sbjct: 61 SDMRAWMASERSRGVAARSLARSLSAVKSFYRWLADREGFEPTAVLSTRSPKFQKKLPRP 120 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 L A ++D V L WI AR+ A++ LLYGCGLRISEAL L P ++ +TL Sbjct: 121 LAVDAARAMIDTVQLQAGEP--WIAARDMAVVTLLYGCGLRISEALGLIPADV-PLPATL 177 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 RI GKG K R+VP++P+ R A+ Y + CP ++ + P+FRG RG PL P Q + Sbjct: 178 RIIGKGGKERLVPVIPAARTAVNAYLEACPHPMDAD--QPIFRGSRGGPLYPRAIQIVMA 235 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 R LGLP + T H +RHSFATHLL+ GGDLRSIQ +LGH LSTTQ YT V++ Sbjct: 236 NARMQLGLPATATPHAMRHSFATHLLNAGGDLRSIQELLGHASLSTTQAYTAVDTAR--- 292 Query: 309 WMMEIYDQTHP 319 +M++YD HP Sbjct: 293 -LMKVYDAAHP 302 >gi|27375557|ref|NP_767086.1| site-specific tyrosine recombinase XerC [Bradyrhizobium japonicum USDA 110] gi|34222842|sp|Q89X68|XERC_BRAJA RecName: Full=Tyrosine recombinase xerC gi|27348694|dbj|BAC45711.1| xerC [Bradyrhizobium japonicum USDA 110] Length = 321 Score = 242 bits (617), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 130/308 (42%), Positives = 185/308 (60%), Gaps = 8/308 (2%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 + +E WL +L ER LS TL++Y D RQ L FL + E++T++ L T++RA Sbjct: 18 IAQEMTRWLSHLGAERRLSPKTLEAYGRDLRQCLDFLCNHWGERVTLKRFAALEATDVRA 77 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 F++ RR I RSL R+L+G++SF ++L++ + +R K + SLP+ L Sbjct: 78 FMAMRRADDIAGRSLMRALAGLRSFGRFLEREGKGKVGALSAIRAPKVAKSLPKPLPMAS 137 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQ 191 A L D WI AR++A++ LLYG GLRISEAL L + + + L + Sbjct: 138 AKRLADADERAGEERETWILARDAAVMALLYGSGLRISEALGLKRREVPKPGEGDVLVVT 197 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 GKG+K R+VP+L +V + EY +CP+ L + P+F G RG PL+P + Q + +LR Sbjct: 198 GKGNKTRMVPVLQNVLALVQEYVSMCPYPLP--AEGPIFVGARGGPLSPRIIQLAMERLR 255 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 LGLP S T H LRHSFATHLLS GGDLR+IQ +LGH LSTTQIYT ++S+ ++ Sbjct: 256 GALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHSSLSTTQIYTGIDSER----LL 311 Query: 312 EIYDQTHP 319 E+Y HP Sbjct: 312 EVYASAHP 319 >gi|83950126|ref|ZP_00958859.1| tyrosine recombinase [Roseovarius nubinhibens ISM] gi|83838025|gb|EAP77321.1| tyrosine recombinase [Roseovarius nubinhibens ISM] Length = 305 Score = 241 bits (614), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 128/302 (42%), Positives = 197/302 (65%), Gaps = 10/302 (3%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q WL +G S T+++Y D +FL F++ + + I + ++S T++R+++++ Sbjct: 11 QGWLDMSRALKGQSDNTIEAYGRDVAEFLTFMSLHLGGEAGIAALGRISVTDMRSWMAQM 70 Query: 79 RTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 R+ ++G RSL R LS +KSF+++L +R+ + +L+MR+ K + LPR L+ + A + Sbjct: 71 RSGGEVGPRSLARKLSAVKSFIRWLAEREGFDPTAVLSMRSPKFTRKLPRPLSAEHARDV 130 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 ++ +S WI +R+ A++ LLYGCGLRISEALSLT +++ + LRI+GKG K Sbjct: 131 IETAGQQSS--APWIGSRDMAVITLLYGCGLRISEALSLTGESLPLGE-MLRIRGKGGKE 187 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 R+VP++ + R A+ EY LCP+ L+ PLFRG RG PL+P + Q+ ++Q+R LGLP Sbjct: 188 RLVPVIGAARAAVAEYAKLCPYPLDEGA--PLFRGARGGPLSPRIVQKVVQQVRMQLGLP 245 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 S T H +RHSFATHLL+ GGDLR+IQ +LGH LSTTQ YT V++ ++EIY Sbjct: 246 ASATPHAMRHSFATHLLNAGGDLRTIQELLGHASLSTTQAYTAVDTAR----LLEIYRAA 301 Query: 318 HP 319 HP Sbjct: 302 HP 303 >gi|85713711|ref|ZP_01044701.1| phage integrase [Nitrobacter sp. Nb-311A] gi|85699615|gb|EAQ37482.1| phage integrase [Nitrobacter sp. Nb-311A] Length = 322 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 129/315 (40%), Positives = 186/315 (59%), Gaps = 8/315 (2%) Query: 7 PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66 P + ++ ++ WL +L ER LS TL++Y D RQ L+FL + E +T++ L Sbjct: 12 PACAASDVGQQIARWLTHLRAERRLSAKTLEAYARDVRQCLMFLGQHWGELVTLERFAAL 71 Query: 67 SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126 +IRAF++ RR + IG RSL RSL+G++SF ++L++ + + +R K SLP Sbjct: 72 EPGDIRAFMAARRAEDIGGRSLMRSLAGLRSFARFLEREGLGKVGALGAIRAPKVGKSLP 131 Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DD 184 + + A D WI AR++A++ LLYG GLRISEAL L +++ Sbjct: 132 KPIQMSAAKRFADASERAGEDREPWIWARDAAVMALLYGSGLRISEALGLKRRDVPLPGA 191 Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 L + GKG+K R+VP+L +V I EY +CP L+ + P+F G RG PL + Q Sbjct: 192 GDVLVVTGKGNKTRMVPVLHNVLALIHEYVAMCPHSLSPDG--PIFVGARGGPLRARIIQ 249 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + ++R LGLP S T H LRHSFATHLLS GGDLR+IQ +LGH LSTTQIYT ++S+ Sbjct: 250 LVMARMRGALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDSE 309 Query: 305 NGGDWMMEIYDQTHP 319 ++E+Y HP Sbjct: 310 R----LLEVYRTAHP 320 >gi|92116157|ref|YP_575886.1| site-specific tyrosine recombinase XerC [Nitrobacter hamburgensis X14] gi|91799051|gb|ABE61426.1| tyrosine recombinase XerC subunit [Nitrobacter hamburgensis X14] Length = 300 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 128/303 (42%), Positives = 182/303 (60%), Gaps = 12/303 (3%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL +L ER LS T ++Y D RQ L+FL+ + E +T++ L +++RAF++ RR Sbjct: 4 WLSHLRAERRLSPKTCEAYARDARQCLMFLSQHWGELVTLKRFAALEASDVRAFMAARRA 63 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 IG RSL R+L+G++SF ++L++ + + +R K SLP+ + A D Sbjct: 64 DDIGGRSLMRALAGLRSFARFLEREGLGKVGALSAIRAPKVGKSLPKPIQMSAAKRFADA 123 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL----TPQNIMDDQSTLRIQGKGDK 196 WI AR++A++ LLYG GLRISEAL L PQ D L + GKG+K Sbjct: 124 SERAGEDREPWIWARDAAVMALLYGSGLRISEALGLKRRDVPQPGAGD--VLVVTGKGNK 181 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 R+VP+L +V + EY +CP +L + P+F G RG PL+P + Q + ++R LGL Sbjct: 182 TRMVPVLQNVLALVHEYVAVCPH--SLPPEGPIFVGARGGPLSPRIIQLTMARMRGALGL 239 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 P S T H LRHSFATHLLS GGDLR+IQ +LGH LSTTQIYT ++S+ ++E+Y Sbjct: 240 PDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDSER----LLEVYKT 295 Query: 317 THP 319 HP Sbjct: 296 AHP 298 >gi|149201080|ref|ZP_01878055.1| site-specific tyrosine recombinase XerC [Roseovarius sp. TM1035] gi|149145413|gb|EDM33439.1| site-specific tyrosine recombinase XerC [Roseovarius sp. TM1035] Length = 306 Score = 240 bits (613), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 124/300 (41%), Positives = 183/300 (61%), Gaps = 9/300 (3%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 WL + +G + T+ +Y D FL F+ + E + + +++ +++RA+++ R Sbjct: 12 TWLATQKALKGAAANTIDAYARDVGDFLRFMTLHNGETQGLGALSRITTSDMRAWMAHTR 71 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 +G RSL R LS +KSF ++L +R+ + +L +R+ K LPR L+ + A +++ Sbjct: 72 GGDVGPRSLARKLSAVKSFYRWLSEREGFEPTAVLAIRSPKFQRKLPRPLSPEAASDMIN 131 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 L T WI AR+ A++ LLYGCGLRISEALSLT ++ Q LRI GKG K R+ Sbjct: 132 T--LDAQSLTPWIAARDQAVVTLLYGCGLRISEALSLTGADLPLGQ-VLRIIGKGGKERL 188 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 VP++ R A+ +Y LCP+D+ N PLF G RG L+P + Q+ + Q R LGLP + Sbjct: 189 VPVIEPARAAVAQYARLCPYDIPRNG--PLFLGARGGALSPRLIQKVMEQARAQLGLPAT 246 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T H +RHSFATHLL+ GGDLR+IQ +LGH LSTTQ YT V++ +ME+Y + HP Sbjct: 247 ATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYTGVDTAR----LMEVYARAHP 302 >gi|83943902|ref|ZP_00956359.1| tyrosine recombinase [Sulfitobacter sp. EE-36] gi|83845149|gb|EAP83029.1| tyrosine recombinase [Sulfitobacter sp. EE-36] Length = 315 Score = 239 bits (611), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 119/301 (39%), Positives = 183/301 (60%), Gaps = 9/301 (2%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q+WL + +G ++ T+ +Y+ D FL F+ + + + + Q++ +++RA++++ Sbjct: 18 QSWLDHQRALKGAAENTITAYQGDLVDFLAFMTLHKGDSQGLGALSQITISDMRAWMAQT 77 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R+ +G RS+ R LS +K+F ++L +R+ + +L+ R+ K LPR L A ++ Sbjct: 78 RSGDVGPRSMARKLSAVKAFYRWLAEREGFEPTAVLSTRSPKFPKKLPRPLAIDAAQAMI 137 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D+V + + H W+ AR+ A+L LL+GCGLRISEAL L + + LRI GKG K R Sbjct: 138 DSVEMQSRH--AWVAARDVAVLTLLWGCGLRISEALGLKGADAPLPE-VLRIIGKGGKER 194 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +VP+LP+ R A+ Y +CPF + PLFR +RG PL + + R LGLP Sbjct: 195 VVPVLPAARDAVDAYLRVCPFGKERDA--PLFRAMRGGPLAARAISQVMADARMQLGLPA 252 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 S T H LRHSFATHLL GGDLR+IQ +LGH LSTTQ YT V++ +M++Y++ H Sbjct: 253 SATPHALRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYTAVDTAR----LMDVYNRAH 308 Query: 319 P 319 P Sbjct: 309 P 309 >gi|84501636|ref|ZP_00999808.1| tyrosine recombinase [Oceanicola batsensis HTCC2597] gi|84390257|gb|EAQ02816.1| tyrosine recombinase [Oceanicola batsensis HTCC2597] Length = 310 Score = 239 bits (611), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 123/305 (40%), Positives = 188/305 (61%), Gaps = 9/305 (2%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +WL ++ RG S+ T+ +Y D +L F+ + I + +++ +++RA++++ R Sbjct: 15 DWLSGMKSLRGASEATIGAYRRDLVDYLSFMTEHLGGPQGIAALGRVTTSDMRAWMARER 74 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 +G RSL R LS +K+F ++L +R+ + +L+ R + SLPR L E A +++ Sbjct: 75 GAGLGARSLARKLSAVKTFYRWLAEREGLEVTPVLSARAPRYQRSLPRPLAEDAARAMIE 134 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 V +S W+ AR++A++ LLYGCGLRISEALSLT ++ S LRI+GKG K RI Sbjct: 135 TV--GSSDTRPWVAARDAAVVTLLYGCGLRISEALSLTVDDLPLGDS-LRIRGKGGKERI 191 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 VPL+ R+A+ Y ++ P + PLFR IRG L+ Q+ + + R LGLP + Sbjct: 192 VPLIAPARQAVEAYLEIMPHPVTSGA--PLFRAIRGGALSARTVQKSMERARMGLGLPAT 249 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T H +RHSFATHLLS GGDLRSIQ +LGH LSTTQ+YT V++ +ME+Y+ +HP Sbjct: 250 ATPHAMRHSFATHLLSAGGDLRSIQDLLGHASLSTTQVYTGVDTAR----LMEVYEASHP 305 Query: 320 SITQK 324 ++ Sbjct: 306 RAARR 310 >gi|91975033|ref|YP_567692.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris BisB5] gi|91681489|gb|ABE37791.1| tyrosine recombinase XerC subunit [Rhodopseudomonas palustris BisB5] Length = 329 Score = 239 bits (611), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 130/312 (41%), Positives = 187/312 (59%), Gaps = 8/312 (2%) Query: 10 VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69 S +L E WL +L ER LS TL++Y D RQFLIFLA + +T+ +L T Sbjct: 22 ASADLNAEFTRWLSHLRAERRLSGKTLEAYARDLRQFLIFLAGHWGGVVTLGRFARLEAT 81 Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 ++RAF++ RR I RSL R+L+G++SF ++L++ + + ++R K SLP+ + Sbjct: 82 DVRAFMAARRGDAIAGRSLMRALAGLRSFGRFLEREGKGSVGALSSVRAPKIKKSLPKPI 141 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQST 187 A L D WI R++A++ LLYG GLRISEAL L +++ T Sbjct: 142 QIAAAKRLADADERAGEDRETWILVRDAAVMALLYGSGLRISEALGLRRRDVPAPGKGDT 201 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 L + GKG+K R+VP+L +V I +Y CP L + P+F G RG PL+P + Q + Sbjct: 202 LIVLGKGNKTRMVPVLQNVLAQIADYASACPHPLPPDG--PMFVGARGGPLSPRIIQLAM 259 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 +LR LGLP S T H LRHSFATHLL+ GGDLR+IQ +LGH LSTTQ+YT ++++ Sbjct: 260 ERLRGSLGLPDSATPHALRHSFATHLLTRGGDLRAIQELLGHASLSTTQVYTGIDTER-- 317 Query: 308 DWMMEIYDQTHP 319 ++E+Y+ HP Sbjct: 318 --LLEVYNSAHP 327 >gi|218532541|ref|YP_002423357.1| tyrosine recombinase XerC [Methylobacterium chloromethanicum CM4] gi|218524844|gb|ACK85429.1| tyrosine recombinase XerC [Methylobacterium chloromethanicum CM4] Length = 365 Score = 239 bits (610), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 126/302 (41%), Positives = 182/302 (60%), Gaps = 8/302 (2%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + W + L ER ++ T+++YE D RQFLI A + TI + L ++RAF++ R Sbjct: 28 RGWREALARERRMAANTVEAYERDLRQFLIHRAARSGTP-TIAGLIALKPRDLRAFMAAR 86 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + IG RSL R L+G++SF ++L++ + + + +R+ K LPR L AL + Sbjct: 87 RAEGIGGRSLMRMLAGLRSFARFLEREGHGSVAALGAVRSPKVERRLPRPLPISAALAMT 146 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKI 197 W+ AR++A++ LLYG GLRISEAL LT ++ M +R+ GKG K+ Sbjct: 147 APETRPDDDRAPWVLARDAAVIALLYGSGLRISEALGLTARDAPMPGIDEVRVTGKGGKV 206 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 R VP+LP+V +A+ Y LCP L+ + PLF G++G PL+P V Q + LR LGLP Sbjct: 207 RAVPVLPAVAEAVAAYLSLCPH--PLDPEGPLFVGVKGGPLSPRVVQYAVSALRGALGLP 264 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 S T H LRHSFATHLL+ G+LR+IQ +LGH LSTTQIYT V++ +M ++ Sbjct: 265 ESATPHALRHSFATHLLARRGELRAIQELLGHASLSTTQIYTKVDAAR----LMSAFEDA 320 Query: 318 HP 319 HP Sbjct: 321 HP 322 >gi|254563619|ref|YP_003070714.1| ptyrosine recombinase xerC, integrase/recombinase Ripx [Methylobacterium extorquens DM4] gi|254270897|emb|CAX26902.1| ptyrosine recombinase xerC, integrase/recombinase Ripx (xerC) [Methylobacterium extorquens DM4] Length = 365 Score = 239 bits (610), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 126/302 (41%), Positives = 182/302 (60%), Gaps = 8/302 (2%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + W + L ER ++ T+++YE D RQFLI A + TI + L ++RAF++ R Sbjct: 28 RGWREALARERRMAANTVEAYERDLRQFLIHRAARSGTP-TIAGLIALKPRDLRAFMAAR 86 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + IG RSL R L+G++SF ++L++ + + + +R+ K LPR L AL + Sbjct: 87 RAEGIGGRSLMRMLAGLRSFARFLEREGHGSVAALGAVRSPKVERRLPRPLPISAALAMT 146 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKI 197 W+ AR++A++ LLYG GLRISEAL LT ++ M +R+ GKG K+ Sbjct: 147 APETRPDDDRAPWVLARDAAVIALLYGSGLRISEALGLTARDAPMPGIDEVRVTGKGGKV 206 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 R VP+LP+V +A+ Y LCP L+ + PLF G++G PL+P V Q + LR LGLP Sbjct: 207 RAVPVLPAVAEAVAAYLSLCPH--PLDPEGPLFVGVKGGPLSPRVVQYAVSALRGALGLP 264 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 S T H LRHSFATHLL+ G+LR+IQ +LGH LSTTQIYT V++ +M ++ Sbjct: 265 ESATPHALRHSFATHLLARRGELRAIQELLGHASLSTTQIYTKVDAAR----LMSAFEDA 320 Query: 318 HP 319 HP Sbjct: 321 HP 322 >gi|86139170|ref|ZP_01057740.1| tyrosine recombinase [Roseobacter sp. MED193] gi|85824014|gb|EAQ44219.1| tyrosine recombinase [Roseobacter sp. MED193] Length = 312 Score = 239 bits (610), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 127/301 (42%), Positives = 184/301 (61%), Gaps = 9/301 (2%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q WLQ L G S T+ +Y+ D FL F+ ++ + + +++ +++R+++++ Sbjct: 19 QLWLQGLRALDGASDNTINAYQGDISSFLAFMTQHSGAPQGLGALARITTSDMRSWMAQE 78 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R G RSL R LS +KSF ++L +R+ + +L R K LPR L+E A ++ Sbjct: 79 RNAGTGARSLARRLSAVKSFYRWLAEREGFELTAVLAARAPKFQKKLPRPLDEDAARAVI 138 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + V L ++ T WI AR+ A++ LLYGCGLRISEAL+LT + S+LRI GKG K R Sbjct: 139 ETVELQSN--TDWIAARDVAVVTLLYGCGLRISEALALTGKT-APLPSSLRILGKGGKER 195 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +VP++ + R+A+ Y L P+ + PLFRG RG LNP Q + Q R LGLP Sbjct: 196 LVPVIAAAREAVARYIALSPYPNEADG--PLFRGARGGALNPRQIQGAMAQARAQLGLPA 253 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 S T H LRHSFATHLL GGDLR+IQ +LGH LSTTQ YT V++ + +M +Y+++H Sbjct: 254 SATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTAVDTAH----LMAVYNRSH 309 Query: 319 P 319 P Sbjct: 310 P 310 >gi|86747397|ref|YP_483893.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris HaA2] gi|86570425|gb|ABD04982.1| tyrosine recombinase XerC subunit [Rhodopseudomonas palustris HaA2] Length = 351 Score = 239 bits (609), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 131/317 (41%), Positives = 188/317 (59%), Gaps = 9/317 (2%) Query: 5 NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64 +LP + +L E WL +L ER LS TL++Y D RQFL FLA + ++T+ Sbjct: 40 DLP-CAAADLNAEFTRWLSHLRAERRLSGKTLEAYARDLRQFLFFLAGHWGGEVTLGRFA 98 Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 +L T++RAF++ RR I RSL R+L+G++SF ++L++ + + +R K S Sbjct: 99 RLETTDVRAFMAARRGDAIAGRSLMRALAGLRSFGRFLEREGKGSVGALSAVRAPKIKKS 158 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-- 182 LP+ + A L D W+ R++A++ LLYG GLRISEAL L +++ Sbjct: 159 LPKPIQIAAAKRLADADERAGEDRETWVLVRDAAVMALLYGSGLRISEALGLKRRDVPAP 218 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242 TL + GKG+K R+VP+L +V I +Y CP L + P+F G RG PL+P + Sbjct: 219 GKGDTLIVLGKGNKTRMVPVLDAVLAQIADYAKACPHPLPPDG--PMFVGARGGPLSPRI 276 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 Q + +LR LGLP S T H LRHSFATHLLS GGDLR+IQ +LGH LSTTQIYT ++ Sbjct: 277 IQLAMERLRGALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGID 336 Query: 303 SKNGGDWMMEIYDQTHP 319 ++ ++E+Y HP Sbjct: 337 TER----LLEVYASAHP 349 >gi|83954474|ref|ZP_00963185.1| tyrosine recombinase [Sulfitobacter sp. NAS-14.1] gi|83840758|gb|EAP79929.1| tyrosine recombinase [Sulfitobacter sp. NAS-14.1] Length = 315 Score = 239 bits (609), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 118/301 (39%), Positives = 183/301 (60%), Gaps = 9/301 (2%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q+WL + +G ++ T+ +Y+ D FL F+ + + + + +++ +++RA++++ Sbjct: 18 QSWLDHQRALKGAAENTITAYQGDLVDFLAFMTLHKGDSQGLGALSKITISDMRAWMAQT 77 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R+ +G RS+ R LS +K+F ++L +R+ + +L+ R+ K LPR L A ++ Sbjct: 78 RSGDVGPRSMARKLSAVKAFYRWLAEREGFEPTAVLSTRSPKFPKKLPRPLAIDAAQAMI 137 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D+V + + H W+ AR+ A+L LL+GCGLRISEAL L + + LRI GKG K R Sbjct: 138 DSVEMQSRH--AWVAARDVAVLTLLWGCGLRISEALGLKGADAPLPE-VLRIIGKGGKER 194 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +VP+LP+ R A+ Y +CPF + PLFR +RG PL + + R LGLP Sbjct: 195 VVPVLPAARDAVEAYLRVCPFGKERDA--PLFRAVRGGPLAARAISQVMADARMQLGLPA 252 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 S T H LRHSFATHLL GGDLR+IQ +LGH LSTTQ YT V++ +M++Y++ H Sbjct: 253 SATPHALRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYTAVDTAR----LMDVYNRAH 308 Query: 319 P 319 P Sbjct: 309 P 309 >gi|163853685|ref|YP_001641728.1| tyrosine recombinase XerC [Methylobacterium extorquens PA1] gi|240141109|ref|YP_002965589.1| ptyrosine recombinase xerC, integrase/recombinase Ripx (xerC) [Methylobacterium extorquens AM1] gi|163665290|gb|ABY32657.1| tyrosine recombinase XerC [Methylobacterium extorquens PA1] gi|240011086|gb|ACS42312.1| ptyrosine recombinase xerC, integrase/recombinase Ripx (xerC) [Methylobacterium extorquens AM1] Length = 365 Score = 239 bits (609), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 126/302 (41%), Positives = 182/302 (60%), Gaps = 8/302 (2%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + W + L ER ++ T+++YE D RQFLI A + TI + L ++RAF++ R Sbjct: 28 RGWREALARERRMAANTVEAYERDLRQFLIHRAARSGTP-TIAGLIALKPRDLRAFMAAR 86 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + IG RSL R L+G++SF ++L++ + + + +R+ K LPR L AL + Sbjct: 87 RAEGIGGRSLMRMLAGLRSFARFLEREGHGSVAALGAVRSPKVERRLPRPLPISAALAMT 146 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKI 197 W+ AR++A++ LLYG GLRISEAL LT ++ M +R+ GKG K+ Sbjct: 147 APETRPDDDRAPWVLARDAAVIALLYGSGLRISEALGLTARDAPMPGIDEVRVTGKGGKV 206 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 R VP+LP+V +A+ Y LCP L+ + PLF G++G PL+P V Q + LR LGLP Sbjct: 207 RAVPVLPAVAEAVAAYLSLCPH--PLDPEGPLFVGVKGGPLSPRVVQYAVSALRGALGLP 264 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 S T H LRHSFATHLL+ G+LR+IQ +LGH LSTTQIYT V++ +M ++ Sbjct: 265 ESATPHALRHSFATHLLARRGELRAIQELLGHASLSTTQIYTKVDAAR----LMSAFEDA 320 Query: 318 HP 319 HP Sbjct: 321 HP 322 >gi|85706394|ref|ZP_01037488.1| tyrosine recombinase XerC [Roseovarius sp. 217] gi|85669167|gb|EAQ24034.1| tyrosine recombinase XerC [Roseovarius sp. 217] Length = 306 Score = 238 bits (608), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 124/299 (41%), Positives = 183/299 (61%), Gaps = 9/299 (3%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL + +G + T+ +Y D FL F+ + E + + +++ +++RA+++ R Sbjct: 13 WLAAQKALKGAAANTIDAYARDVGDFLRFMTQHHGETQGLGALSRITTSDMRAWMAHTRG 72 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 +G RSL R LS +KSF ++L +R+ + +L+ R+ K LPR L+ + A ++D Sbjct: 73 GDVGPRSLARKLSAVKSFYRWLSEREGFEPTAVLSTRSPKFQRKLPRPLSPEAASEMIDT 132 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 L T WI AR+ A++ LLYGCGLRISEAL LT + + + LRI GKG K R+V Sbjct: 133 --LEVQSLTPWIAARDQAVVTLLYGCGLRISEALGLTGAD-LPIGTVLRILGKGGKERLV 189 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 P++ R A+ +Y LCP+D+ N PLF G RG L+P + Q+ + Q R LGLP + Sbjct: 190 PVIEPARAAVTQYARLCPYDIPRNG--PLFLGARGGALSPRLIQKVMEQTRAQLGLPATA 247 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T H +RHSFATHLL+ GGDLR+IQ +LGH LSTTQ YT V++ +ME+Y +THP Sbjct: 248 TPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYTGVDTAR----LMEVYARTHP 302 >gi|89053521|ref|YP_508972.1| site-specific tyrosine recombinase XerC [Jannaschia sp. CCS1] gi|88863070|gb|ABD53947.1| phage integrase [Jannaschia sp. CCS1] Length = 307 Score = 238 bits (608), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 126/300 (42%), Positives = 172/300 (57%), Gaps = 9/300 (3%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 WL +L RG ++ TL +Y D +FL F A + +R L ++RA++S +R Sbjct: 15 GWLTHLRGVRGRAEATLTAYGADVGEFLAFQADHLGGSPGPAALRTLQTRDLRAWMSSQR 74 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + +G RSL R LS +K+F + +R + +L+MR K + LPR L E A ++ Sbjct: 75 ARDVGARSLARRLSAVKAFYNWWAERDGFDATAVLSMRAPKHTRRLPRPLTEVGAKDMIA 134 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 L + W+ AR+ A++ LLYGCGLRISEAL LT +++ LRI GKG K R Sbjct: 135 G--LADQDDRDWVQARDMAVVTLLYGCGLRISEALGLT-ADLLPLPGILRITGKGGKERE 191 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 VP+LP+ + A Y LCP DL PLFR IRG L P + + + R LGLP + Sbjct: 192 VPVLPAAQDACARYAQLCPHDLAPGT--PLFRAIRGGALGPRAVAKVMEKTRLQLGLPAT 249 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T H +RHSFATHLL GGDLR+IQ +LGH LSTTQ YT V++ +ME+Y HP Sbjct: 250 ATPHAMRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYTAVDTAR----LMEVYANAHP 305 >gi|260464185|ref|ZP_05812378.1| tyrosine recombinase XerC [Mesorhizobium opportunistum WSM2075] gi|259029988|gb|EEW31271.1| tyrosine recombinase XerC [Mesorhizobium opportunistum WSM2075] Length = 312 Score = 238 bits (608), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 140/310 (45%), Positives = 189/310 (60%), Gaps = 13/310 (4%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L R+ WL+ L ER LS T+++YE DTRQFL FL + I I L ++R Sbjct: 11 DLQAAREGWLKMLARERRLSPETVEAYERDTRQFLHFLTGHCGGSPGISDIANLRPADLR 70 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F++ RR G R+L R L+GI+S L++L++R + + +R ++ SLP+ L Sbjct: 71 GFLAARRNAGAGARTLGRGLAGIRSLLRFLERRGLANAAGAAALRAPRQPKSLPKPLTAS 130 Query: 133 QA--LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-LR 189 A + V+ L E WI ARN+A+L LLYG GLRISEAL L ++ + T LR Sbjct: 131 DAKHVVSVEGQLA----EEPWIAARNAAVLTLLYGSGLRISEALGLAGADLASEADTVLR 186 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 + GKG K R+VP+LP +AI EY LCP +L+ + LFRG RG PLNP + QR + + Sbjct: 187 VTGKGGKTRLVPVLPVALRAIAEYRRLCPH--HLDPKGLLFRGARGGPLNPAIIQRDMAK 244 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 LR L LP + T H LRHSFATHLL GGDLR+IQ +LGH LSTTQIYT V++ Sbjct: 245 LRSALNLPDTATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQIYTGVDTTR---- 300 Query: 310 MMEIYDQTHP 319 ++EIY+ HP Sbjct: 301 LLEIYESAHP 310 >gi|284928595|ref|YP_003422327.1| hypothetical protein Dshi_5002 [Dinoroseobacter shibae DFL 12] gi|251736500|gb|ACT10200.1| hypothtical protein [Dinoroseobacter shibae DFL 12] Length = 308 Score = 238 bits (608), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 129/301 (42%), Positives = 179/301 (59%), Gaps = 9/301 (2%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + WL +L TL +Y+ D FL FLA + + +R+++ +++RA+++ Sbjct: 15 ETWLTHLRALDDSPASTLSAYQRDVAGFLGFLARHDGGLASPARLRRITQSDMRAWMAAE 74 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + +G RSL R+LS +KSF +++ +R + +L R+ K LPR L E AL ++ Sbjct: 75 RRRGLGARSLARALSAVKSFFRWVGERDGFEPTAVLAARSPKYQRKLPRPLAEDAALEMI 134 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 V L + WI AR+ A++ LLYGCGLRISEAL LT L I+GKGDK R Sbjct: 135 AQVELQAA--DSWIAARDVAVVTLLYGCGLRISEALGLT-GAAAPLPEVLTIRGKGDKER 191 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 IVP+LP+ R A+ Y L P L + PLFRG RG LNP V + + Q R LGLP Sbjct: 192 IVPVLPAARTAVDTYLRLSPHPLEKDG--PLFRGKRGGQLNPRVIAKVMEQARMQLGLPS 249 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 S T H +RHSFATHLL+ GGDLR+IQ +LGH LSTTQ YT V++ ++E+Y+ H Sbjct: 250 SATPHAMRHSFATHLLAAGGDLRAIQELLGHASLSTTQAYTAVDATR----LLEVYNAAH 305 Query: 319 P 319 P Sbjct: 306 P 306 >gi|75674624|ref|YP_317045.1| site-specific tyrosine recombinase XerC [Nitrobacter winogradskyi Nb-255] gi|123773314|sp|Q3SVJ8|XERC_NITWN RecName: Full=Tyrosine recombinase xerC gi|74419494|gb|ABA03693.1| tyrosine recombinase XerC subunit [Nitrobacter winogradskyi Nb-255] Length = 321 Score = 238 bits (607), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 126/315 (40%), Positives = 188/315 (59%), Gaps = 8/315 (2%) Query: 7 PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66 P + ++ ++ WL +L ER LS TL++Y D RQ L+FL + E++T++ L Sbjct: 11 PACAASDIGQQIVRWLTHLRAERRLSPKTLEAYARDVRQCLMFLGQHWSEQVTLEGFVAL 70 Query: 67 SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126 +IR+F++ RR IG RSL RSL+G++SF ++L++ + + +R K S+P Sbjct: 71 EPADIRSFMAARRADDIGGRSLMRSLAGLRSFARFLEREGLGKVGALGAIRAPKVGKSVP 130 Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 + ++ A D WI AR++A++ LLYG GLRISEAL L +++ + Sbjct: 131 KPIHMSAAKRFADASERAGEDREPWIWARDAAVMALLYGSGLRISEALGLKRRDVPPPGA 190 Query: 187 --TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 L + GKG+K R+VP+L +V I EY +CP +L + P+F G RG PL + Q Sbjct: 191 GDVLVVTGKGNKTRMVPVLQNVLALIHEYVAMCPH--SLPPEGPIFVGARGGPLRARIIQ 248 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + ++R LGLP S T H LRHSFATHLLS GGDLR+IQ +LGH LSTTQIYT ++S+ Sbjct: 249 LVMARMRGALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDSE 308 Query: 305 NGGDWMMEIYDQTHP 319 ++++Y HP Sbjct: 309 R----LLDVYRTAHP 319 >gi|90421704|ref|YP_530074.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris BisB18] gi|90103718|gb|ABD85755.1| tyrosine recombinase XerC subunit [Rhodopseudomonas palustris BisB18] Length = 324 Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 131/312 (41%), Positives = 186/312 (59%), Gaps = 8/312 (2%) Query: 10 VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69 + +L+ E WL L ER LS TL++Y D RQ L FL + + +++I+ L Sbjct: 17 AAADLVAEATRWLAYLRSERRLSPKTLEAYTRDLRQCLTFLNEHWDAQVSIKRFAALEAG 76 Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 +IRAF++ RR +IG RSL R+L+G++SF ++L++ + +R K SLP+ + Sbjct: 77 DIRAFMASRRADEIGGRSLMRALAGLRSFGRFLEREGKGKVGALSAIRAPKVGKSLPKPI 136 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQST 187 A L D + WI AR++A++ LLYG GLRISEAL L +++ T Sbjct: 137 QIAGAKRLADATERAGENREPWIWARDAAVMALLYGSGLRISEALGLKRRDVPLPGKGDT 196 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 L + GKG+K R+VP+L +V I +Y +CP L Q P+F G RG PL+P + Q + Sbjct: 197 LIVTGKGNKTRMVPVLQNVLSLIQDYVAVCPHPLPQ--QGPIFVGARGGPLSPRIIQLTM 254 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 +LR LGLP S T H LRHSFATHLLS GG+LR+IQ +LGH LSTTQIYT ++S+ Sbjct: 255 ERLRGALGLPDSATPHALRHSFATHLLSRGGELRAIQELLGHTSLSTTQIYTGIDSER-- 312 Query: 308 DWMMEIYDQTHP 319 + E+Y HP Sbjct: 313 --LFEVYKTAHP 322 >gi|126737207|ref|ZP_01752942.1| tyrosine recombinase [Roseobacter sp. SK209-2-6] gi|126721792|gb|EBA18495.1| tyrosine recombinase [Roseobacter sp. SK209-2-6] Length = 328 Score = 238 bits (606), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 128/316 (40%), Positives = 183/316 (57%), Gaps = 9/316 (2%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 NN ++S +NWL L G S+ T+ +Y+ D FL F+ + ++ + Sbjct: 20 NNAGLLISPACRDALENWLLGLTALSGASENTITAYQGDLTSFLGFMTLHRGSPQGLKAL 79 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 + ++RA++++ R G RSL R LS +KSF ++L +R+ + +L R K Sbjct: 80 ADIKTADMRAWMAQERGSGTGPRSLARRLSAVKSFYRWLAEREGFEPTAVLAARAPKFQK 139 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 LPR L E+ A +++ V ET WI AR+ A++ LLYGCGLRISEAL L + Sbjct: 140 KLPRPLAEEAAKAVLERV--EQQSETDWIGARDLAVVTLLYGCGLRISEALGLKGGDA-P 196 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 ++LRI GKG K R+VP+L + R A+ Y LCP + + PLFRG+RG LNP Sbjct: 197 LPASLRILGKGGKERLVPVLDAARDAVDHYLALCPH--SAEKETPLFRGVRGGALNPRQI 254 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 Q + ++R LGLP S T H LRHSFATHLL GGDLR+IQ +LGH LSTTQ Y V++ Sbjct: 255 QSTMAKVRAQLGLPASATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYAAVDT 314 Query: 304 KNGGDWMMEIYDQTHP 319 + +M +Y++ HP Sbjct: 315 AH----LMAVYNRAHP 326 >gi|146337558|ref|YP_001202606.1| site-specific tyrosine recombinase XerC [Bradyrhizobium sp. ORS278] gi|146190364|emb|CAL74360.1| Tyrosine recombinase (integrase/recombinase) [Bradyrhizobium sp. ORS278] Length = 327 Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 128/319 (40%), Positives = 190/319 (59%), Gaps = 10/319 (3%) Query: 5 NLPEIVSFE--LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62 +LP+++ + +++ WL +L ER LS T+++Y D RQ L FL + E +T+ Sbjct: 13 DLPDLIGADDGVVRAMTQWLAHLRSERRLSPKTVEAYARDLRQCLQFLCTHWGEPVTLPR 72 Query: 63 IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122 L ++IRAF++ RR I RSL R+L+G++SF ++L++ + +R K + Sbjct: 73 FAALEASDIRAFMAMRRADDIAGRSLMRTLAGLRSFGRFLEREGQGKVGALAGVRAPKIA 132 Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 SLP+ L A L D W+ AR++A++ LLYG GLRISEAL L + + Sbjct: 133 KSLPKPLPMDSAKRLTDADERAGESRETWVLARDAAVMALLYGSGLRISEALGLKRREVP 192 Query: 183 --DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240 + L + GKG+K R+VP+L +V I EY LCP+ L + P+F G +G PL+P Sbjct: 193 RPGEGDVLIVTGKGNKTRMVPVLQNVLALIDEYARLCPY--PLPAEGPMFLGAKGGPLSP 250 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + Q + +LR LGLP S T H LRHSFATHLLS GGDLR+IQ +LGH LSTTQ+YT Sbjct: 251 RIIQLAMERLRGALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYTG 310 Query: 301 VNSKNGGDWMMEIYDQTHP 319 ++S+ ++++Y HP Sbjct: 311 IDSER----LLQVYASAHP 325 >gi|84514470|ref|ZP_01001834.1| tyrosine recombinase [Loktanella vestfoldensis SKA53] gi|84511521|gb|EAQ07974.1| tyrosine recombinase [Loktanella vestfoldensis SKA53] Length = 306 Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 122/300 (40%), Positives = 179/300 (59%), Gaps = 9/300 (3%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +WL + G+++ T+ +Y D F+ FL + + + + +++ +++RA+++ R Sbjct: 14 HWLDHERALAGVAENTIVAYRADVLGFMAFLTQHNGDTQGLGPLARVTLSDMRAWMAHER 73 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + + RSL RSLS +KSF ++L R+ + +L+ R K LPR L+ A ++D Sbjct: 74 GRGVAARSLARSLSAVKSFYRWLAAREGFEPTAVLSTRAPKFQPKLPRPLSAPAASDMID 133 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + L W+ AR++A++ LLYGCGLRISEALSL ++ LRI GKG K RI Sbjct: 134 QIGLQAC--DPWVAARDTAVVTLLYGCGLRISEALSLQGRD-APLPPVLRITGKGGKQRI 190 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 VP+L R A+ Y LCP++ + PLFR IRG PL P Q+ + Q R LGLP + Sbjct: 191 VPVLDIARDAVAGYLRLCPYEQAADA--PLFRAIRGGPLAPRAIQKVVEQTRLQLGLPGT 248 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T H LRHSFATHL++ GGDLR IQ +LGH LSTTQ YT V++ +M +YD+ HP Sbjct: 249 ATPHALRHSFATHLMAAGGDLRCIQELLGHASLSTTQAYTAVDAAQ----LMAVYDRAHP 304 >gi|126725541|ref|ZP_01741383.1| site-specific tyrosine recombinase XerC [Rhodobacterales bacterium HTCC2150] gi|126704745|gb|EBA03836.1| site-specific tyrosine recombinase XerC [Rhodobacterales bacterium HTCC2150] Length = 306 Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 125/302 (41%), Positives = 179/302 (59%), Gaps = 11/302 (3%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 QNWL +++ ++ TL +Y D FL FL + E I ++ + +IR++++ Sbjct: 13 QNWLSHIKSLDDAAQNTLDAYTRDLTSFLSFLTQHFGETSGISALKAVGQRDIRSWMAFE 72 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + RSL R LS +KSF ++ + + + +L+ R K LPR + A ++ Sbjct: 73 RGSGVSARSLARKLSAVKSFYRWFGEHEGFEPTAVLSARTPKFQKKLPRPIAPDAARAMI 132 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKI 197 D V L + E W+ R++A++ +LYGCGLRISEAL L + + D LRI GKG K Sbjct: 133 DTVPLQS--EKNWVGLRDTAVVTVLYGCGLRISEALGLLGSDAPLPD--VLRILGKGGKE 188 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 RIVP++P+ ++A+ EY CP + + PLFRGIRG LNP + Q + + R LGLP Sbjct: 189 RIVPVIPAAKRAVDEYIRACPHPIEADS--PLFRGIRGGALNPRIIQGVVAKARMQLGLP 246 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + T H LRHSFATHLL GGDLRSIQ +LGH LSTTQ YT V++ +ME+YD+ Sbjct: 247 ATATPHALRHSFATHLLEAGGDLRSIQELLGHASLSTTQAYTAVDTAR----LMEVYDKA 302 Query: 318 HP 319 HP Sbjct: 303 HP 304 >gi|163745808|ref|ZP_02153167.1| site-specific tyrosine recombinase XerC [Oceanibulbus indolifex HEL-45] gi|161380553|gb|EDQ04963.1| site-specific tyrosine recombinase XerC [Oceanibulbus indolifex HEL-45] Length = 314 Score = 236 bits (601), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 121/319 (37%), Positives = 184/319 (57%), Gaps = 9/319 (2%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 M P ++S Q WL + +G ++ T+ +Y D +FL F+ + + + Sbjct: 1 MSAEANPLLISPAARDALQTWLTHQSALKGAAENTVTAYRGDVTEFLAFMTLHKGDTQGL 60 Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 + +++ +++RA++++ R+ +G RS+ R LS +K+F ++L +R+ + +L R+ K Sbjct: 61 GALAKITISDMRAWMARMRSGGVGSRSVARKLSAVKAFYRWLAEREGFEPTAVLLTRSPK 120 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 LPR L E A L+D V T W+ AR+ A+L +L+GCGLRISEAL+L + Sbjct: 121 FQKKLPRPLAEDAARALIDCV--ETQARAPWVAARDVAVLTMLWGCGLRISEALALKGGD 178 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240 S+LRI GKG K R+VP+LP+ R A+ +Y +CP + PLFR IRG L Sbjct: 179 A-PLPSSLRILGKGGKERVVPVLPAARAAVEDYLAVCPHPQEPHA--PLFRAIRGGALGA 235 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + + R LGLP + T H +RHSFATHLL GGDLR+IQ +LGH LSTTQ YT Sbjct: 236 RAVAQVMADARMQLGLPATATPHAMRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYTA 295 Query: 301 VNSKNGGDWMMEIYDQTHP 319 V++ +ME+Y+ HP Sbjct: 296 VDTAR----LMEVYNNAHP 310 >gi|188583991|ref|YP_001927436.1| tyrosine recombinase XerC [Methylobacterium populi BJ001] gi|179347489|gb|ACB82901.1| tyrosine recombinase XerC [Methylobacterium populi BJ001] Length = 367 Score = 235 bits (600), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 125/303 (41%), Positives = 181/303 (59%), Gaps = 12/303 (3%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLA--FYTEEKITIQTIRQLSYTEIRAFISK 77 W + L ER ++ T+++YE D RQFL + A F T TI + L ++RAF++ Sbjct: 29 GWREALARERRMAANTVEAYERDLRQFLAYRAARFGTP---TIAGLIALKPRDLRAFMAA 85 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 RR + IG RSL R L+G++SF ++L++ + + + +R+ K LPR L AL + Sbjct: 86 RRAEGIGGRSLMRMLAGLRSFARFLEREGHGSVAALGAVRSPKVERRLPRPLPVPAALAM 145 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDK 196 W+ AR++A++ LLYG GLRISEAL L ++ + +R+ GKG K Sbjct: 146 TAPGTRPDDSREPWVLARDAAVIALLYGSGLRISEALGLAARDAPVPGIDEVRVTGKGGK 205 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +R VP+LP+V +A+ Y LCP L+ + PLF G++G PL+P V Q + LR LGL Sbjct: 206 VRAVPVLPAVAEAVAAYLSLCPH--PLDPEGPLFVGVKGGPLSPRVVQYAVAALRGALGL 263 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 P S T H LRHSFATHLL+ G+LR+IQ +LGH LSTTQIYT V++ +M ++ Sbjct: 264 PESATPHALRHSFATHLLARQGELRAIQELLGHASLSTTQIYTKVDAAR----LMSAFED 319 Query: 317 THP 319 HP Sbjct: 320 AHP 322 >gi|154244121|ref|YP_001415079.1| integrase family protein [Xanthobacter autotrophicus Py2] gi|154158206|gb|ABS65422.1| integrase family protein [Xanthobacter autotrophicus Py2] Length = 342 Score = 235 bits (599), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 122/316 (38%), Positives = 182/316 (57%), Gaps = 6/316 (1%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 + L V+ E+ + WL L ER LS TL++Y D L+ L + + + Sbjct: 14 HGLLSAVTPEVGAAIEGWLAGLAHERRLSPKTLEAYARDLAVVLLRLTDHLGACPGLGDL 73 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 L+ ++RA ++ RR + R+L R L+ +SF ++L++ + + +R K Sbjct: 74 AGLTTADVRAVLAARRADGVAPRTLVRLLAAARSFGRHLEREGLGKVGALTAVRAPKVPR 133 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 SLP+ ++ A L D W+ AR++A++ LLYG GLRISEALSLTP+++ Sbjct: 134 SLPKPVSIAAARALSDPTTRAGEDREDWVLARDAAVIALLYGAGLRISEALSLTPRDVPA 193 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 D ++ + GKG K R+VPL+ VR++I EY +CP L + PLFRG RG PL+P + Sbjct: 194 DAESITVTGKGRKTRMVPLIAPVRRSIAEYRAICPH--ALGPEGPLFRGTRGGPLSPRIV 251 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 Q + ++R LGLP S T H LRH+FATHLLS GG++R+IQ +LGH LSTTQIYT V++ Sbjct: 252 QLAVERMRGALGLPQSATPHALRHAFATHLLSRGGEIRAIQELLGHASLSTTQIYTEVDA 311 Query: 304 KNGGDWMMEIYDQTHP 319 +M + HP Sbjct: 312 TA----LMAAWRSAHP 323 >gi|84683488|ref|ZP_01011391.1| tyrosine recombinase XerC [Maritimibacter alkaliphilus HTCC2654] gi|84668231|gb|EAQ14698.1| tyrosine recombinase XerC [Rhodobacterales bacterium HTCC2654] Length = 313 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 121/302 (40%), Positives = 179/302 (59%), Gaps = 11/302 (3%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 WL +L G + T+++Y D FL FL+ + + ++ +++RA+++ Sbjct: 16 SGWLDHLRALDGAAANTIEAYRKDVVSFLAFLSAHHGTSHGRTALASVTISDMRAWMASE 75 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + RSL R+LS +K F ++L R S +L+ R K + LPR ++++ A ++ Sbjct: 76 RAGGLSARSLARALSAVKGFYRWLSDRDGFDASTVLSTRAPKFTAKLPRPVSQEAAEEVI 135 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ-NIMDDQSTLRIQGKGDKI 197 + WI AR++A++ LLYGCGLRISEAL LT + + + D LRI GKG K Sbjct: 136 STTAIQA--RDGWIGARDAAVVTLLYGCGLRISEALGLTGRAHPLPD--VLRIVGKGGKE 191 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 R+VP+LP+ R A+ Y LCP+ + + PLF G RGK L P Q+ + R LGLP Sbjct: 192 RLVPVLPAARDAVASYVRLCPYPVTDDT--PLFYGARGKALGPRTVQKAMESARLQLGLP 249 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + T H +RHSFATHLL+ GGDLR+IQ +LGH LSTTQ YT V+++ +ME+YD+ Sbjct: 250 ATATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYTAVDTQR----LMEVYDRA 305 Query: 318 HP 319 HP Sbjct: 306 HP 307 >gi|119385228|ref|YP_916284.1| site-specific tyrosine recombinase XerC [Paracoccus denitrificans PD1222] gi|119374995|gb|ABL70588.1| phage integrase family protein [Paracoccus denitrificans PD1222] Length = 312 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 125/301 (41%), Positives = 178/301 (59%), Gaps = 9/301 (2%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + WL + R S T+++Y+ D FL FL Y T+ L+ T++RAF + Sbjct: 19 ERWLASERAARDRSDHTIRAYQADLLAFLTFLGSYHGTPALPATLAGLTQTDMRAFAAAE 78 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + + RSL R LS +SF++++ R S L R K + SLPR L +QA ++ Sbjct: 79 RGRGLSARSLARRLSATRSFIRWMSDRHGFDASRALASRGPKYTRSLPRPLAPEQAQDVL 138 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + + ++H WI R++A+L LL+GCGLRISEAL L + + L I+GKG + R Sbjct: 139 E--ITGSTHPEAWIATRDAAVLTLLWGCGLRISEALGLNGAD-WPLREALTIRGKGGRER 195 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VP+LP R+AI +Y LCP+ L + PLFRG RG L+P + +RQ R+ LGLP Sbjct: 196 QVPVLPIAREAIADYLRLCPYPLQ--AKAPLFRGARGGRLSPTLISGAMRQARQVLGLPP 253 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + T H LRHSFATHLL+ GGDLR+IQ +LGH LSTTQ+YT V+ + ++ +Y H Sbjct: 254 TATPHALRHSFATHLLTAGGDLRTIQELLGHASLSTTQVYTGVDDAH----LLAVYRAAH 309 Query: 319 P 319 P Sbjct: 310 P 310 >gi|323137166|ref|ZP_08072245.1| integrase family protein [Methylocystis sp. ATCC 49242] gi|322397524|gb|EFY00047.1| integrase family protein [Methylocystis sp. ATCC 49242] Length = 336 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 130/323 (40%), Positives = 185/323 (57%), Gaps = 12/323 (3%) Query: 2 EGNNLPEIVSF----ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK 57 E LP F ++ +E WLQ L ER S+ T+ +Y D FL FL + K Sbjct: 18 EARPLPGPAFFSAAPQIAEEAALWLQALSGERRASRHTIDAYARDVGVFLRFLTEHLGAK 77 Query: 58 ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117 + + ++RAF+++RR + RSL R+L+ +++FL++L+K+ + +R Sbjct: 78 PDAAALSAMQPADLRAFLARRRNDGLESRSLLRALAAVRNFLRFLEKKGLARTDVFGAVR 137 Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 K+ +SLP+AL A L+D W+ AR++A++ LLYG GLRISEALS+ Sbjct: 138 APKRPHSLPKALTVGDARDLIDPEQRAGEAREPWVLARDAAVMALLYGVGLRISEALSIQ 197 Query: 178 PQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 + + + I GKG K R +P++ VR+AI Y +CP+DL PLF G RG Sbjct: 198 RADAPIGRTDRVTITGKGGKTRTLPVIEPVRRAIEAYLAICPYDLAGG---PLFVGARGG 254 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 PL+P + Q I++LR LGLP S T H LRHSFATHLL GGDLR+IQ +LGH LSTTQ Sbjct: 255 PLSPRIVQLAIQRLRGALGLPDSATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQ 314 Query: 297 IYTNVNSKNGGDWMMEIYDQTHP 319 IYT V+ K +++ Y HP Sbjct: 315 IYTAVDKKR----LLDAYRSAHP 333 >gi|115522315|ref|YP_779226.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris BisA53] gi|115516262|gb|ABJ04246.1| tyrosine recombinase XerC subunit [Rhodopseudomonas palustris BisA53] Length = 342 Score = 234 bits (597), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 126/312 (40%), Positives = 185/312 (59%), Gaps = 8/312 (2%) Query: 10 VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69 S +L E WL +L ER LS TL++Y D RQFL FL + ++++ +L Sbjct: 35 ASKDLTAEIVRWLGHLRAERRLSPKTLEAYARDLRQFLGFLCEHWGTQVSVARFAKLEAG 94 Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 ++RAF++ RR IG RSL R+L+G++SF ++L++ + +R K +LP+ + Sbjct: 95 DVRAFMASRRADAIGGRSLMRALAGLRSFGRFLEREGKGKVGALSAIRAPKVGKTLPKPI 154 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQST 187 A L D WI R++A++ LLYG GLRISEAL L +++ T Sbjct: 155 QIASAKRLTDPDERAGEERENWILVRDAAVMALLYGSGLRISEALGLKRRDVPLPGQGDT 214 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 L + GKG+K R+VP+L SV +++ +Y +CP L + +F G RG PL+P + Q + Sbjct: 215 LIVTGKGNKTRMVPVLQSVLQSVADYVAICPHPLAADRA--IFVGARGGPLSPRIIQLTM 272 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 ++R LGLP S T H LRHSFATHLLS GG+LR+IQ +LGH LSTTQIYT ++S+ Sbjct: 273 ERMRGALGLPDSATPHALRHSFATHLLSRGGELRAIQELLGHASLSTTQIYTGIDSER-- 330 Query: 308 DWMMEIYDQTHP 319 ++E+Y HP Sbjct: 331 --LLEVYATAHP 340 >gi|328545835|ref|YP_004305944.1| Site-specific recombinase, phage integrase family protein [polymorphum gilvum SL003B-26A1] gi|326415575|gb|ADZ72638.1| Site-specific recombinase, phage integrase family protein [Polymorphum gilvum SL003B-26A1] Length = 316 Score = 233 bits (593), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 137/300 (45%), Positives = 185/300 (61%), Gaps = 9/300 (3%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL +L ER LS TL +YE D RQFL FL + + +R L + RAF+++RR Sbjct: 23 WLDHLGDERRLSDKTLVAYERDVRQFLRFLTDHLGGTPGMAELRDLRPADFRAFLARRRR 82 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 RSL R L+GI+SFL +L++R + +R ++ SLP+ ++ A +V Sbjct: 83 AGAQSRSLARGLAGIRSFLGFLERRGEVNAAAAGAIRPPRQPRSLPKPVSAADARAIVSG 142 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLRIQGKGDKIRI 199 L + WI+ARN+A+L LLYGCGLR++EALSLT + + TL I+GKG K RI Sbjct: 143 ELAMEAE--PWIEARNAAVLTLLYGCGLRLAEALSLTGRTAPRRGTKTLTIRGKGGKERI 200 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 VP+LP V +A+ Y LCP+ + PLF G RG PLNP + Q +++LR L LP S Sbjct: 201 VPVLPVVCEAVDAYLKLCPYTPEPDG--PLFLGARGGPLNPRLVQLAMQKLRSALALPDS 258 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T H LRHSFATHLL+ GGDLR+IQ +LGH LSTTQIYT V++ ++E YD+ HP Sbjct: 259 ATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQIYTEVDTAR----LLEAYDKAHP 314 >gi|154251910|ref|YP_001412734.1| integrase family protein [Parvibaculum lavamentivorans DS-1] gi|154155860|gb|ABS63077.1| integrase family protein [Parvibaculum lavamentivorans DS-1] Length = 326 Score = 233 bits (593), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 127/301 (42%), Positives = 183/301 (60%), Gaps = 9/301 (2%) Query: 17 ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 E +NW +L ER +S+ TL +Y D +F FL + T++ + +L + RAF+S Sbjct: 31 EIRNWYSHLMGERRMSEATLINYHRDLTRFFEFLVDHLGGPATLKDLGRLELRDFRAFVS 90 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 +RR + RSL R LS ++SF ++L + + + ++ +R+ K +++P+ L A Sbjct: 91 QRRKDGLQSRSLARMLSSVRSFFRFLDRTHVLSNASATALRSPKLPHAIPKPLTAAGARE 150 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L+D +HE WI AR+ A+L LLYGCGLR+SEAL L ++ + LRI GKG K Sbjct: 151 LLDEA--EIAHEEPWIGARDIAVLTLLYGCGLRVSEALGLN-RSEAPLKDVLRITGKGGK 207 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 R+VP+LP+ R A+ +Y LCP L + PLF G RG L + + +LRR LGL Sbjct: 208 ERVVPVLPAARMAVDDYLRLCPHGLAKDD--PLFVGSRGARLGQRQVRETMTRLRRRLGL 265 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 P S T H LRHSFATHLL+ GGDLRSIQ +LGH LSTTQ+YT V++ ++E+YD+ Sbjct: 266 PESATPHALRHSFATHLLAGGGDLRSIQELLGHASLSTTQMYTEVDAAR----LLEVYDK 321 Query: 317 T 317 Sbjct: 322 A 322 >gi|114571348|ref|YP_758028.1| phage integrase family protein [Maricaulis maris MCS10] gi|114341810|gb|ABI67090.1| phage integrase family protein [Maricaulis maris MCS10] Length = 311 Score = 232 bits (592), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 131/299 (43%), Positives = 182/299 (60%), Gaps = 9/299 (3%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +L ER LS TL +Y+ D F FL + + T+ LS + RA+++ RR Sbjct: 17 FLAHLSGERRLSPRTLDAYQRDLDNFGAFLCEHHGRLPDLMTLGDLSSRDFRAYMASRRR 76 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RSL R+LS I++F Y K+R + + + + K S P+ ++E A +L+ Sbjct: 77 DGLSARSLARALSAIRTFFDYAKRRWGVDNAALSLVESPKLLRSAPKPVSESAAKSLLAE 136 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + W+ AR++A+L LLYGCGLRISEALSLT N + TLRI GKG+K RIV Sbjct: 137 TGARGGPD--WVSARDNAVLLLLYGCGLRISEALSLT-GNDLPIGDTLRIAGKGNKTRIV 193 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 P+LP+V +AI +Y LCPF + L FRG+RG L+ Q +++LR LGLP + Sbjct: 194 PVLPAVAEAISQYVALCPFATKDDAAL--FRGVRGGNLSARSVQALMQELRGRLGLPETA 251 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T H LRH+FATHLL++GGDLR+IQ +LGH LSTTQIY +V S ++ IYD THP Sbjct: 252 TPHALRHAFATHLLAHGGDLRAIQELLGHASLSTTQIYADVESAR----LLSIYDGTHP 306 >gi|217977361|ref|YP_002361508.1| integrase family protein [Methylocella silvestris BL2] gi|217502737|gb|ACK50146.1| integrase family protein [Methylocella silvestris BL2] Length = 329 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 133/308 (43%), Positives = 182/308 (59%), Gaps = 7/308 (2%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 EL + WL +L ER +++LTL +Y D RQFL F A + ++ + LS ++R Sbjct: 25 ELASCARAWLAHLGGERRVAELTLAAYSRDLRQFLSFAAIHFGAPPSLAMVSTLSPADLR 84 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 AF++ RR +G RSL R L+G++SF YL++ + + + +R K LP+ L Sbjct: 85 AFMAARRAAGVGSRSLLRQLAGLRSFTHYLQRSGVQQSAALGAVRAPKAPRRLPKPLTAA 144 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS-LTPQNIMDDQSTLRIQ 191 A + WI AR++A+L LLYG GLRISEALS L + ++ TLRI Sbjct: 145 AACAVTSVESRAGEDRPTWILARDAAVLGLLYGAGLRISEALSILRADAPIGERDTLRIT 204 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 GKG KIR P++ VR+A+ Y LCP+ +L + LF G +G PL+P + Q + ++R Sbjct: 205 GKGGKIREAPVIAPVRQAVEAYLKLCPY--HLPPERHLFVGAKGGPLSPRIIQLAVERMR 262 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 LGLP S T H LRHSFATHLLS GGDLRSIQ +LGH LSTTQIYT V+S ++ Sbjct: 263 GALGLPDSATPHALRHSFATHLLSRGGDLRSIQELLGHASLSTTQIYTAVDSAR----LI 318 Query: 312 EIYDQTHP 319 E Y HP Sbjct: 319 EAYRSAHP 326 >gi|83944764|ref|ZP_00957130.1| integrase/recombinase XerC, putative [Oceanicaulis alexandrii HTCC2633] gi|83851546|gb|EAP89401.1| integrase/recombinase XerC, putative [Oceanicaulis alexandrii HTCC2633] Length = 313 Score = 231 bits (589), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 121/299 (40%), Positives = 181/299 (60%), Gaps = 9/299 (3%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +LE ER LS T+++Y+ D FL + ++T++ + LS + RA+++ RR Sbjct: 19 FLSHLEGERRLSPRTVEAYDRDLSGLFEFLTGHLGGRLTLKALSDLSSADWRAWLADRRR 78 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 +G R+L+R LS ++F Y ++R + + + K PR ++E A +L+ Sbjct: 79 DGVGPRTLQRGLSAARTFFSYGRRRWGLDNPALGLVESPKAQRRQPRPVSESAAKSLLKE 138 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 T + WI AR++A+L LLYGCGLRISEAL+LT ++ + LR+ GKG K RIV Sbjct: 139 A--ETGAKEPWIGARDAAVLSLLYGCGLRISEALALTGRDHPLPE-VLRVAGKGGKTRIV 195 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 P+LP+VR+A+ Y D CP+ + + PLFR RG PL Q ++ +R LGLP + Sbjct: 196 PVLPAVRQAVSAYVDACPYQIERDE--PLFRASRGGPLQARAMQSAMQTMRSRLGLPATA 253 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T H LRH+FATHLL++GGDLR+IQ +LGH LSTTQIY ++ ++ I+ THP Sbjct: 254 TPHALRHAFATHLLAHGGDLRAIQDLLGHASLSTTQIYADIEQSR----LIAIHAATHP 308 >gi|254466182|ref|ZP_05079593.1| tyrosine recombinase XerC [Rhodobacterales bacterium Y4I] gi|206687090|gb|EDZ47572.1| tyrosine recombinase XerC [Rhodobacterales bacterium Y4I] Length = 306 Score = 231 bits (589), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 126/301 (41%), Positives = 175/301 (58%), Gaps = 9/301 (2%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q WL+ L S TL +Y D FL F+ + + + +++ ++RA+++ Sbjct: 13 QLWLERLGGLEDASANTLAAYRGDVTAFLAFMTQHFGGPQGLGALARITTADMRAWMASE 72 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R G RSL R LS +K+F ++L KR+ + +L R K LPR L + A ++ Sbjct: 73 RNSGTGARSLARKLSAVKTFYRWLAKREGFEPAAVLLARAPKFQKKLPRPLAPEAAKAVL 132 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + V L + ET W+ AR+ A++ LLYGCGLRISEAL L + Q LRI GKG K R Sbjct: 133 EAVELQS--ETDWVAARDVAVVTLLYGCGLRISEALGLKGADAPLPQ-VLRILGKGRKER 189 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +VP+LP+ R A+ Y +LCP PLFRG+RG LNP Q + + R LGLP Sbjct: 190 VVPVLPAARAAVDRYLELCPHPQERAA--PLFRGVRGGALNPRQIQGVMAKTRAQLGLPA 247 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + T H LRHSFATHLL GGDLR+IQ +LGH LSTTQ YT V++ + +M++Y + H Sbjct: 248 TATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQTYTAVDTTH----LMDVYMRAH 303 Query: 319 P 319 P Sbjct: 304 P 304 >gi|148252009|ref|YP_001236594.1| site-specific tyrosine recombinase XerC [Bradyrhizobium sp. BTAi1] gi|146404182|gb|ABQ32688.1| tyrosine recombinase XerC subunit [Bradyrhizobium sp. BTAi1] Length = 324 Score = 231 bits (589), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 124/308 (40%), Positives = 182/308 (59%), Gaps = 8/308 (2%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 +++ WL +L ER LS T+++Y D RQ L FL + +T+ L +IRA Sbjct: 21 VIRAMMQWLAHLRSERRLSPKTVEAYARDLRQCLQFLCTHWGGPVTLARFAALEAADIRA 80 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 F++ RR I RSL R+L+G++SF ++L++ + +R K + SLP+ L Sbjct: 81 FMAMRRADDIAGRSLMRTLAGLRSFGRFLEREGQGKVGALAGIRAPKIAKSLPKPLPMDA 140 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQ 191 A L D W+ AR++A++ LLYG GLRISEAL L + + + L + Sbjct: 141 AKRLADADERAGETRETWVLARDAAVMALLYGSGLRISEALGLKRREVPRPGEGDVLVVT 200 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 GKG+K R+VP+L +V + I +Y LCP+ L + P+F G +G PL+P + Q + +LR Sbjct: 201 GKGNKTRMVPVLQNVLQLIDDYARLCPY--PLPAEGPMFLGAKGGPLSPRIIQLAMERLR 258 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 LGLP S T H LRHSFATHLLS GGDLR+IQ +LGH LSTTQ+YT ++S+ ++ Sbjct: 259 GALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYTGIDSER----LL 314 Query: 312 EIYDQTHP 319 ++Y HP Sbjct: 315 QVYASAHP 322 >gi|310816227|ref|YP_003964191.1| site-specific tyrosine recombinase XerC [Ketogulonicigenium vulgare Y25] gi|308754962|gb|ADO42891.1| site-specific tyrosine recombinase XerC [Ketogulonicigenium vulgare Y25] Length = 307 Score = 229 bits (584), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 127/312 (40%), Positives = 179/312 (57%), Gaps = 11/312 (3%) Query: 9 IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68 ++S L WL + G + TL +Y D FL F+ + I Q+ Sbjct: 1 MISAALADALDRWLVHSGAIEGKAGATLVAYRHDVSTFLTFMTLHHGGPQGFAAIAQIEV 60 Query: 69 TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 ++RA++++ R + RSL R+LS +K F +L R+ + +L R K +LPR Sbjct: 61 ADMRAWMAQMRGTGLSSRSLARALSAVKGFYTWLAAREGFEPTAVLAARAPKFQRNLPRP 120 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQST 187 L A L+D V + ++ W+ AR+ A++ LLYG GLRISEALSLT ++ + D Sbjct: 121 LEVDDARRLMDRVEVQSNE--PWVAARDLAVITLLYGSGLRISEALSLTGEDYPLPD--V 176 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 LR+ GKG K R+VP+LP A+ +Y P+ PLFRG+RG L+P + Q+ I Sbjct: 177 LRMTGKGGKQRLVPVLPIAAAAVKDYVRRTPYAPVAGA--PLFRGVRGGALSPRIIQKMI 234 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 Q+R LGLP S T H LRHSFATHLL+ GGDLRSIQ +LGH LSTTQ YT V++ + Sbjct: 235 EQVRLQLGLPASATPHALRHSFATHLLAAGGDLRSIQELLGHASLSTTQAYTAVDAAH-- 292 Query: 308 DWMMEIYDQTHP 319 +M+IYD+ HP Sbjct: 293 --LMQIYDRAHP 302 >gi|83592556|ref|YP_426308.1| site-specific tyrosine recombinase XerC [Rhodospirillum rubrum ATCC 11170] gi|83575470|gb|ABC22021.1| tyrosine recombinase XerC subunit [Rhodospirillum rubrum ATCC 11170] Length = 330 Score = 229 bits (584), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 123/299 (41%), Positives = 180/299 (60%), Gaps = 9/299 (3%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL L+ ER S+ TL +Y D FL FL Y E+ + T+ L + RA+++ R T Sbjct: 38 WLGWLQGERRASRHTLDAYGRDLAAFLTFLRDYRGEEPGLATLASLGPADFRAYMAARLT 97 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q + S+ R+LS +++ ++L + + I +R+ ++ ++P+AL+E +AL + Sbjct: 98 QGLSRPSMARALSTLRNLFRWLDREGVLRNGAIATIRSPRQPQAVPKALSESEALDALS- 156 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + + W+ R+ A+ LLYGCGLR+ EAL L + + +RI GKG K R+V Sbjct: 157 -VASDLQDDPWLAKRDLALFTLLYGCGLRLGEALDLD-RGDLPSGEVMRITGKGRKERLV 214 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 PLLP V +A+ +Y CPF + PLF G RGK LNPGV QR +R+LR +LGLP + Sbjct: 215 PLLPVVVEALADYLAACPFAGGPDD--PLFLGSRGKRLNPGVVQRQMRRLRGFLGLPETA 272 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T H LRHSFATHLL+ GGDLR+IQ +LGH LSTTQ YT V++ ++ ++ THP Sbjct: 273 TPHALRHSFATHLLAQGGDLRTIQELLGHASLSTTQRYTKVDAGT----LVGLHGATHP 327 >gi|158425627|ref|YP_001526919.1| putative site-specific recombinase [Azorhizobium caulinodans ORS 571] gi|158332516|dbj|BAF90001.1| putative site-specific recombinase [Azorhizobium caulinodans ORS 571] Length = 327 Score = 228 bits (582), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 120/305 (39%), Positives = 176/305 (57%), Gaps = 12/305 (3%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + WL L ER LS T +Y D L L + + T+ + L+ ++RA ++ R Sbjct: 29 EGWLARLAHERRLSPKTQDAYARDLTVVLNLLTLHLGHRPTVADMAALAPADVRAVLAAR 88 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + + R+L R ++ +SF ++L++ + + +R K SLP+ ++ A L Sbjct: 89 RMEGVAPRTLVRLMAAARSFGRHLEREGLGKVGALAAVRAPKVPRSLPKPVSVSDAKALA 148 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT----PQNIMDDQSTLRIQGKG 194 D W+ AR++A++ LLYGCGLRISEAL LT P+ DQ T + GKG Sbjct: 149 DPATRAGEDRAPWVLARDAAVIALLYGCGLRISEALGLTRSMMPEPGGGDQIT--VTGKG 206 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 +K R+VPLLP V +A+ +Y LCP+ L + PLFRG +G PL+ + Q + ++R L Sbjct: 207 NKTRMVPLLPQVTQAVADYAALCPYVLEPDK--PLFRGAKGGPLSARIVQMAVERMRGAL 264 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 GLP S T H LRHSFATHLL+ GG+LR+IQ +LGH LSTTQ+YT V++ +M+ Y Sbjct: 265 GLPDSATPHALRHSFATHLLARGGELRAIQELLGHASLSTTQVYTAVDATR----LMDAY 320 Query: 315 DQTHP 319 HP Sbjct: 321 RAAHP 325 >gi|163742251|ref|ZP_02149639.1| site-specific tyrosine recombinase XerC [Phaeobacter gallaeciensis 2.10] gi|161384581|gb|EDQ08962.1| site-specific tyrosine recombinase XerC [Phaeobacter gallaeciensis 2.10] Length = 311 Score = 228 bits (581), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 120/285 (42%), Positives = 170/285 (59%), Gaps = 9/285 (3%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T+ +Y D +FL F+ + + + ++S ++RA+++ R G RSL R LS Sbjct: 34 TVTAYRGDVVEFLAFMTHHFGGPQGLGALAEISTGDMRAWMAATRATGTGARSLARKLSA 93 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 +KSF +L +R+ + +L+ R+ K LPR L E A +++ V ++ T W+ A Sbjct: 94 VKSFYTWLAERQGFEPTAVLSARSPKFQKKLPRPLAEDAARAVIETVEFQST--TDWVAA 151 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ A++ LLYGCGLRISEAL LT + + LRI GKG K RIVP+L + R A+ Y Sbjct: 152 RDVAVVTLLYGCGLRISEALGLTGAD-APLPAVLRITGKGGKERIVPVLSAARAAVDRYL 210 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 LCP PLFRG+RG LN + + + Q R LGLP S T H LRHSFATHLL Sbjct: 211 RLCPHPQERAA--PLFRGVRGGALNARLIRSAMAQARAQLGLPASATPHALRHSFATHLL 268 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 GGDLR+IQ +LGH LSTTQ YT V++ + +M++Y++ HP Sbjct: 269 EAGGDLRAIQELLGHASLSTTQAYTAVDTAH----LMDVYNRAHP 309 >gi|254486283|ref|ZP_05099488.1| tyrosine recombinase XerC [Roseobacter sp. GAI101] gi|214043152|gb|EEB83790.1| tyrosine recombinase XerC [Roseobacter sp. GAI101] Length = 314 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 116/305 (38%), Positives = 177/305 (58%), Gaps = 11/305 (3%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q WL + +G ++ T+ +Y+ D FL F+ + + I + + ++ +++R+++++ Sbjct: 19 QTWLDHQRALKGAAENTITAYQGDVTDFLAFMTLHKGDSIGLGALANITISDMRSWMART 78 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R +G RSL R LS +K+F ++L +R+ + +L+ R+ K LPR L A ++ Sbjct: 79 RGPDVGPRSLARKLSAVKAFYRWLAEREGFEPTAVLSTRSPKFPKKLPRPLAVDAAKAMI 138 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKI 197 D V L + W+ AR+ A+L LL+GCGLRISEAL L + + D LRI GKG K Sbjct: 139 DCVELQSPRP--WVAARDVAVLTLLWGCGLRISEALGLKGADAPLPD--VLRIVGKGGKE 194 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 R+VP+LP+ R A+ Y CP L F+ +RG PL + + R LGLP Sbjct: 195 RVVPVLPAARDAVDAYLRACPHPQEHGTAL--FKAVRGGPLAARAIAQVMADARMQLGLP 252 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + T H +RHSFATHLL GGDLR+IQ +LGH LSTTQ YT V++ +M++Y++ Sbjct: 253 ATATPHAMRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYTAVDTAR----LMDVYNRA 308 Query: 318 HPSIT 322 HP T Sbjct: 309 HPKAT 313 >gi|163738332|ref|ZP_02145747.1| phage integrase [Phaeobacter gallaeciensis BS107] gi|161388253|gb|EDQ12607.1| phage integrase [Phaeobacter gallaeciensis BS107] Length = 311 Score = 228 bits (580), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 120/285 (42%), Positives = 170/285 (59%), Gaps = 9/285 (3%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T+ +Y D +FL F+ + + + ++S ++RA+++ R G RSL R LS Sbjct: 34 TITAYRGDVVEFLAFMTHHFGGPQGLGALAEISTGDMRAWMAATRATGTGARSLARKLSA 93 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 +KSF +L +R+ + +L+ R+ K LPR L E A +++ V ++ T W+ A Sbjct: 94 VKSFYTWLAERQGFEPTAVLSARSPKFQKKLPRPLAEDAARAVIETVEFQST--TDWVAA 151 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ A++ LLYGCGLRISEAL LT + + LRI GKG K RIVP+L + R A+ Y Sbjct: 152 RDVAVVTLLYGCGLRISEALGLTGAD-APLPAVLRITGKGGKERIVPVLHAARAAVDRYL 210 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 LCP PLFRG+RG LN + + + Q R LGLP S T H LRHSFATHLL Sbjct: 211 RLCPHPQERAA--PLFRGVRGGALNARLIRSAMAQARAQLGLPASATPHALRHSFATHLL 268 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 GGDLR+IQ +LGH LSTTQ YT V++ + +M++Y++ HP Sbjct: 269 EAGGDLRAIQELLGHASLSTTQAYTAVDTAH----LMDVYNRAHP 309 >gi|114769433|ref|ZP_01447059.1| tyrosine recombinase [alpha proteobacterium HTCC2255] gi|114550350|gb|EAU53231.1| tyrosine recombinase [alpha proteobacterium HTCC2255] Length = 305 Score = 226 bits (577), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 121/301 (40%), Positives = 181/301 (60%), Gaps = 9/301 (2%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +NWL +L G ++ T+ +Y D F+ FL+ + + + + ++S ++R++IS Sbjct: 12 ENWLSSLSAVGGRAEKTIDAYRHDVSHFIHFLSQHNGKMPSKAILSKVSVKDMRSWISHA 71 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + RSL R+LS IKSF +++ + + + +L+ R K LPR + + A L+ Sbjct: 72 RRSGLSPRSLARALSAIKSFYRWMGQTYGVSTTAVLSTRTPKFEKPLPRPVKKSDAKDLI 131 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + L + HE WI+ARN A++ LLYGCGLRISEALS+T + L+I GKG+K R Sbjct: 132 KQIDLQSEHE--WINARNVAVITLLYGCGLRISEALSITFDKTPLPE-VLKIIGKGNKER 188 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 IVP+LP + A+ Y CP+ N +L F+G RG PLN + ++ + Q R LGLP Sbjct: 189 IVPILPVAKAAVKNYLKCCPYSFLPNDRL--FKGARGGPLNQRLIRKVMEQTRIQLGLPS 246 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + T H++RHSFATHLL GGDLR IQ +LGH LS+TQ YT V+ +M++Y + H Sbjct: 247 TATPHSMRHSFATHLLEAGGDLRVIQELLGHASLSSTQAYTAVDQTR----LMDVYKKAH 302 Query: 319 P 319 P Sbjct: 303 P 303 >gi|260576668|ref|ZP_05844655.1| integrase family protein [Rhodobacter sp. SW2] gi|259021153|gb|EEW24462.1| integrase family protein [Rhodobacter sp. SW2] Length = 307 Score = 225 bits (574), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 125/301 (41%), Positives = 173/301 (57%), Gaps = 9/301 (2%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + WL L G + T+ +Y D +L FL+ + + + + ++RA+++ Sbjct: 14 EAWLTQLRALDGAADHTITAYSADVAGYLSFLSLHRGGTEGLAALTAVPLADLRAWMAHE 73 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + + RSL R+LS +K F +L +R+ + +L+ R K LPR L+ A ++ Sbjct: 74 KGRGLSPRSLARALSAVKGFTGWLAEREGADATAVLSARAPKFRRKLPRPLSVDAAADVL 133 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D V WI AR++A++ LLYGCGLRISEAL LT LRI GKG K R Sbjct: 134 DRV--GDQSLEPWIAARDAAVVTLLYGCGLRISEALGLT-GATHPLPEVLRITGKGGKQR 190 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +VP+LP+ R A+ Y LCPF+L PLFRG RG LNP + + R LGLP Sbjct: 191 LVPVLPAARAAVARYVSLCPFELAATG--PLFRGARGGALNPRQIALVMEKTRAQLGLPA 248 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 S T H LRHSFATHLLS GGDLR+IQ +LGH LSTTQ YT V+++ +ME+YD+ H Sbjct: 249 SATPHALRHSFATHLLSAGGDLRAIQELLGHASLSTTQGYTAVDTQR----LMEVYDKAH 304 Query: 319 P 319 P Sbjct: 305 P 305 >gi|307295097|ref|ZP_07574939.1| integrase family protein [Sphingobium chlorophenolicum L-1] gi|306879571|gb|EFN10789.1| integrase family protein [Sphingobium chlorophenolicum L-1] Length = 298 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 119/301 (39%), Positives = 179/301 (59%), Gaps = 13/301 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + W ++L ++R S T+++Y + + FL + E +T + + ++RAF++ R Sbjct: 9 EQWRRHLALDRRRSVHTVRAYVATAERLVAFLEEHRGEAVTAAMLAGIEQADLRAFLTVR 68 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R IG+ S R LS ++ FL+++ ++ + ++ + LPR ++ +A+ L Sbjct: 69 RMDGIGNVSAARELSAVRGFLRFVGG----EDARVPMLKGPRVKRGLPRPVSPDEAVALA 124 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 ++ T+ E +WI AR+ A+L LLYG GLRI EA+ LT ++ TLR+ GK K R Sbjct: 125 GDIA-ETARE-EWIGARDWAVLLLLYGAGLRIGEAMGLT-GAVLPLGETLRVTGKRGKTR 181 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 IVPLLP VR AI Y LCPF + PLFRG RG PL+P + +R ++ R LGL Sbjct: 182 IVPLLPQVRSAIDAYVALCPFGAERDA--PLFRGARGGPLSPALIRRAVQGARGRLGLSD 239 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 TT H LRHSFATHLL G DLRS+Q +LGH LS+TQIYT+V++ + +++IY H Sbjct: 240 RTTPHALRHSFATHLLGRGADLRSLQELLGHASLSSTQIYTHVDAAH----LLDIYRNAH 295 Query: 319 P 319 P Sbjct: 296 P 296 >gi|254294584|ref|YP_003060607.1| integrase family protein [Hirschia baltica ATCC 49814] gi|254043115|gb|ACT59910.1| integrase family protein [Hirschia baltica ATCC 49814] Length = 318 Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 124/300 (41%), Positives = 191/300 (63%), Gaps = 10/300 (3%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 ++++L ER +S+ T+ Y D FL FL + + + + L+ +++RA+++ RR Sbjct: 26 FVEHLTHERRMSEHTIDGYRRDVGNFLGFLVNHLGGEAHVNDLVNLTPSDVRAWLAFRRA 85 Query: 81 -QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + S+ R+LS +++F KYL ++ + I ++ K+ LPR ++++ A L+ Sbjct: 86 NDDLQATSISRALSAVRAFFKYLDRQLDKPNARIQMVKAPKRPQRLPRPVSQEIAKNLLK 145 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 V WI AR++A++ L+YG GLRISEALSLT ++ + LRIQGKG+K+R+ Sbjct: 146 EV--ENQDVEPWIAARDAAMVALMYGAGLRISEALSLTDADV-PARDILRIQGKGNKVRL 202 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 VPL+P+VR A+ YY+ PF L+ + + PLFRG++GK LNP + Q+ I +LR +GLP + Sbjct: 203 VPLIPAVRDALNVYYEKRPF-LS-DEEGPLFRGVKGKKLNPRIIQKLIEKLRISMGLPDT 260 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T H LRHSFATHLL+NG DLRSIQ++LGH LS+TQIYT V + D + I+ HP Sbjct: 261 ATPHALRHSFATHLLANGADLRSIQTLLGHASLSSTQIYTGVEA----DRLKAIHKAAHP 316 >gi|254417725|ref|ZP_05031449.1| site-specific recombinase, phage integrase family protein [Brevundimonas sp. BAL3] gi|196183902|gb|EDX78878.1| site-specific recombinase, phage integrase family protein [Brevundimonas sp. BAL3] Length = 309 Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 130/301 (43%), Positives = 178/301 (59%), Gaps = 10/301 (3%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL++L ER LS TL++Y R ++ FL + E ++++ + ++ E+RA +++RR+ Sbjct: 15 WLEHLAHERRLSPRTLEAYGHIGRLYVAFLERHRGEALSLKGLGTVTAAEVRAHMAERRS 74 Query: 81 --QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + RSL +SLS I+ F +L +R T + +R + SLPR + E QA L+ Sbjct: 75 GDHPLAARSLSQSLSAIRGFHAFLDRRLDTPAPQLALVRGPRIKPSLPRPVTEDQARGLL 134 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 E W AR+ A+L LLYGCGLRISE LSLT + + TLR+ GKG K R Sbjct: 135 AEPNADPDAE-PWEAARDRAVLTLLYGCGLRISEGLSLTRADAPLGE-TLRVLGKGSKTR 192 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 IVP+LP+VR A+ Y L PF L + L FR RG PL+P Q +++LR LGLP Sbjct: 193 IVPVLPAVRAAVDAYLALQPFPLQPSDAL--FRARRGGPLSPRHVQASVQRLRGRLGLPE 250 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 TT H LRHSFATHLL G DLRSIQ +LGH LSTTQ YT V+++ ++ Y H Sbjct: 251 RTTPHALRHSFATHLLGAGADLRSIQELLGHASLSTTQKYTGVDAER----LLNAYAAAH 306 Query: 319 P 319 P Sbjct: 307 P 307 >gi|294012827|ref|YP_003546287.1| integrase/recombinase XerC [Sphingobium japonicum UT26S] gi|292676157|dbj|BAI97675.1| integrase/recombinase XerC [Sphingobium japonicum UT26S] Length = 298 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 119/301 (39%), Positives = 179/301 (59%), Gaps = 13/301 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + W ++L ++R S T+++Y + L FL + E T + + ++RAF++ R Sbjct: 9 EQWRRHLALDRRRSVHTVRAYVATAERLLAFLEEHRGEAATAAMLAGIEQADLRAFLTVR 68 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R IG+ S R LS ++ FL+++ ++ + ++ + LPR ++ +A+ L Sbjct: 69 RMDGIGNVSAARELSAVRGFLRFVGG----EDARVPMLKGPRVKRGLPRPVSPDEAVALA 124 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 ++ T+ E +WI AR+ A+L LLYG GLRI EA++LT ++ TLR+ GK K R Sbjct: 125 GDIA-ETARE-EWIGARDWAVLLLLYGAGLRIGEAMALT-GAVLPLGETLRVTGKRGKTR 181 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 IVPLLP VRKA+ Y LCPF + PLFRG RG PL+P + +R ++ R LGL Sbjct: 182 IVPLLPQVRKAMEAYVALCPFGQEKDA--PLFRGARGGPLSPALIRRAVQGARGRLGLSD 239 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 TT H LRHSFATHLL G DLRS+Q +LGH LS+TQIYT V++ + ++++Y H Sbjct: 240 RTTPHALRHSFATHLLGRGADLRSLQELLGHASLSSTQIYTQVDAAH----LLDVYRNAH 295 Query: 319 P 319 P Sbjct: 296 P 296 >gi|220920293|ref|YP_002495594.1| integrase family protein [Methylobacterium nodulans ORS 2060] gi|259710433|sp|B8I9N8|XERC_METNO RecName: Full=Tyrosine recombinase xerC gi|219944899|gb|ACL55291.1| integrase family protein [Methylobacterium nodulans ORS 2060] Length = 322 Score = 223 bits (567), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 121/308 (39%), Positives = 178/308 (57%), Gaps = 8/308 (2%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L + WL L+ ER S+ T+++Y D RQFL LA + I + L ++R Sbjct: 15 DLREAAAAWLAVLKTERRFSENTVEAYGRDLRQFLAHLA-RSGAAPDIPALVALKPRDLR 73 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 AF++ RR + + RSL R+L+ ++SF ++L + T S + +R+ K LPR L Sbjct: 74 AFMAARRAEGVSGRSLMRALAALRSFARHLDREGHGTVSALSAVRSPKVERRLPRPLPVA 133 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQ 191 A+ + + W+ AR++A+L LLYG GLRI EAL + ++ + D TL I Sbjct: 134 AAVAMASPDIRAGEDRPDWVLARDAAVLALLYGAGLRIGEALGIRRKDAPVGDIDTLTIL 193 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 GKG K R+VP++ V+ A+ +Y +CP L + PLF G +G PL+P + Q + LR Sbjct: 194 GKGQKTRMVPVIAPVQAAVADYLAVCPHPLPPDG--PLFVGQKGGPLSPRIVQLAVASLR 251 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 LGLP S T H LRHSFATHLL+ GDLR+IQ +LGH L+TTQ+YT V+S ++ Sbjct: 252 GALGLPDSATPHALRHSFATHLLARQGDLRAIQDLLGHASLATTQVYTKVDSAR----LL 307 Query: 312 EIYDQTHP 319 +D HP Sbjct: 308 SAFDAAHP 315 >gi|300024727|ref|YP_003757338.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888] gi|299526548|gb|ADJ25017.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888] Length = 327 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 130/308 (42%), Positives = 185/308 (60%), Gaps = 10/308 (3%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L + ++WL +L ERG S T ++Y D QFL FL + + + ++ R Sbjct: 24 DLKRAVEDWLAHLINERGQSAATREAYARDVTQFLAFLKTHLGRAPCLGDLSRVDTKVFR 83 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 AF++ RR + RSL RSLS +++F ++L++ +L + K +S+P+ L Sbjct: 84 AFLAHRRKSDVVSRSLARSLSSLRTFFRWLEREGRLQNRAVLQVALPKIPHSVPKPLTVD 143 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQ 191 A LV +WI+AR++A+L LLYG GLRISEALSLTP + ++ + + I Sbjct: 144 GAAELVAT---KNDDRAEWINARDTAVLLLLYGAGLRISEALSLTPNSAPLNGRDVMHIT 200 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 GKG K R+VP LP + +AI +Y LCPF L+ + PLF G RG PL+P + Q + ++R Sbjct: 201 GKGGKDRLVPALPIISEAIAKYMRLCPFPLSGDG--PLFLGARGGPLSPRLIQLAMARMR 258 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 R LGLP + T H LRHSFATHLLS G DLR IQ +LGH LSTTQ+YT V+ D ++ Sbjct: 259 RELGLPETATPHALRHSFATHLLSAGADLRQIQELLGHASLSTTQVYTEVDR----DRLL 314 Query: 312 EIYDQTHP 319 +YDQ HP Sbjct: 315 SVYDQAHP 322 >gi|163792312|ref|ZP_02186289.1| Integrase [alpha proteobacterium BAL199] gi|159182017|gb|EDP66526.1| Integrase [alpha proteobacterium BAL199] Length = 323 Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 117/300 (39%), Positives = 183/300 (61%), Gaps = 9/300 (3%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +W + L+ E+ +S TL +Y D F+ FLA + + + + + L + RA++++R Sbjct: 28 DWREWLKSEKRVSPHTLAAYGRDLGGFVNFLAGHLGDTVNLSALGTLQPADFRAWLARRA 87 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + S R+LS I+ F ++L++R + + + + +R + S+P+AL +A ++ Sbjct: 88 GGGLEKSSTARALSTIRGFFRFLERRGLASNAAVGVVRGPRVPRSIPKALTVDEARDALE 147 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 +V T + WI AR+SA+L LLYGCGLR+ EAL L + ++ TL I GKG K R+ Sbjct: 148 SVGELT--DEPWIAARDSAVLTLLYGCGLRVGEALDLN-RRVVPLSDTLTITGKGGKARM 204 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 VP+LP VR+A+ +Y + CP+ L + PLF G+RG L Q+ I+ LR +LGLP + Sbjct: 205 VPVLPVVRRAVADYLERCPYRLGPDD--PLFVGVRGGRLGARRVQQSIQTLRCWLGLPET 262 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T H LRHSFATHLL+ GGDLR+IQ +LGH LSTTQ YT V++ +++++ HP Sbjct: 263 ATPHALRHSFATHLLAGGGDLRAIQELLGHASLSTTQRYTEVDAAR----LLDVHRSAHP 318 >gi|144898915|emb|CAM75779.1| Tyrosine recombinase xerC [Magnetospirillum gryphiswaldense MSR-1] Length = 314 Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 121/300 (40%), Positives = 168/300 (56%), Gaps = 9/300 (3%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 W L E+ S TL Y D F FL + + + + QL + RAF++ R+ Sbjct: 20 QWRDWLAGEKRSSPHTLDGYARDVSAFTTFLLGHLGGEADLAALGQLQPADFRAFLAARQ 79 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 +G S+ R +S ++ F KYL + + I +++ + SLP+ L + A+ + Sbjct: 80 ADGLGRSSVARLMSSLRGFFKYLDRHDLVHNPAINAVKSPRPPKSLPKPLAAEDAIEALS 139 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 H+ W+ AR+ A+ LLYGCGLR+ EAL+L ++I + + I GKG K R+ Sbjct: 140 TA--GELHDEPWLAARDVALFTLLYGCGLRLGEALALQKRDIPAGDA-MTITGKGRKQRL 196 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 VP+LP VR+AI EY LCP L + PLF G RG LNPGV QR +R+LR +GLP + Sbjct: 197 VPVLPIVRQAIGEYVTLCPHPLAADG--PLFVGARGGLLNPGVVQRQMRRLRALMGLPDT 254 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T H LRHSFATHLL+ GGDLR+IQ +LGH LSTTQ YT V+ + Y HP Sbjct: 255 ATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQRYTQVDEAR----LTRAYRDAHP 310 >gi|94495392|ref|ZP_01301972.1| phage integrase [Sphingomonas sp. SKA58] gi|94424780|gb|EAT09801.1| phage integrase [Sphingomonas sp. SKA58] Length = 312 Score = 218 bits (556), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 117/299 (39%), Positives = 174/299 (58%), Gaps = 13/299 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W +L ++R S T+++Y+ + + FL + E +T + L ++RAF++ RR Sbjct: 25 WRAHLALDRRRSVHTVRAYQATAERLVAFLEQHRGEAVTQAMLASLEQADLRAFLTSRRM 84 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 IG+ S R LS ++ FL+++ ++ ++ + LPR ++ +A+ L + Sbjct: 85 DGIGNLSAARELSAVRGFLRFVGG----EDARPPRLKGPRVKRGLPRPVSPDEAMALAAD 140 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + T+ E WI AR+ A+L LLYG GLRI EA+ LT + TLR+ GK K R+V Sbjct: 141 IA-ETARE-GWIGARDWAVLLLLYGAGLRIGEAMGLT-GAVWPLGDTLRVTGKRGKTRLV 197 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 PLLP +R AI Y CP+ L + PLFRG RG PL+P + +R ++ R LGL T Sbjct: 198 PLLPQLRAAIESYVAACPYPLERDA--PLFRGARGGPLSPALIRRAVQGARGRLGLSERT 255 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T H LRHSFATHLL G DLRS+Q +LGH LS+TQIYT V++ + +++IY HP Sbjct: 256 TPHALRHSFATHLLGRGADLRSLQELLGHASLSSTQIYTQVDAAH----LLDIYRNAHP 310 >gi|197106796|ref|YP_002132173.1| integrase/recombinase XerC [Phenylobacterium zucineum HLK1] gi|196480216|gb|ACG79744.1| integrase/recombinase XerC [Phenylobacterium zucineum HLK1] Length = 308 Score = 218 bits (555), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 125/288 (43%), Positives = 173/288 (60%), Gaps = 8/288 (2%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 R WL LE ER S TL++Y ++L FL + E ++ + + ++ E+RA+++ Sbjct: 11 RAAWLGRLEHERRASPRTLEAYGFVVARYLAFLERHRGEALSAKDLGSVTAGEVRAWLAH 70 Query: 78 RRTQK--IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 R+ + + RSL ++LS I++F ++L +R + + +R + PR ++E QA+ Sbjct: 71 LRSGETPLSPRSLSQALSAIRTFHRFLDRRLEIPNAAVGLVRGPRVKPGAPRPVSEDQAI 130 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKG 194 L+ E W AR+ A+L LLYGCGLRISEALSL + + +Q LRI GKG Sbjct: 131 GLIAEPAFDPDRE-GWEAARDQAVLTLLYGCGLRISEALSLRRSDAPLPEQ--LRITGKG 187 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 K RIVP+LP+VR+A+ Y PF L + PLFR RG PL+P Q ++QLR L Sbjct: 188 AKTRIVPVLPAVREAVDAYLTQVPFGLAPDE--PLFRAKRGGPLSPRHVQATVQQLRGRL 245 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 GLP S T H LRHSFATHLL G DLRSIQ +LGH LSTTQ YT V+ Sbjct: 246 GLPASATPHALRHSFATHLLGAGADLRSIQELLGHASLSTTQRYTEVD 293 >gi|114798167|ref|YP_761981.1| putative tyrosine recombinase XerC [Hyphomonas neptunium ATCC 15444] gi|114738341|gb|ABI76466.1| putative tyrosine recombinase XerC [Hyphomonas neptunium ATCC 15444] Length = 299 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 120/299 (40%), Positives = 184/299 (61%), Gaps = 8/299 (2%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L ER ++ T+++Y D FL FL + + + + + +IRA++++RR Sbjct: 7 FLDYLTRERRMATKTVEAYGSDLSFFLAFLRVHMGAEPSPALLADVRARDIRAYLAERRR 66 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + D ++ R LS IK+ ++L + + + ++ ++ LPR ++ A L+ Sbjct: 67 EGLSDATVARILSSIKALYRWLDRAHGVGNAEVGYLQGPRRPQRLPRPVSIDAAKDLISE 126 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 E WI AR++A+L LLYG GLRISEALSLT ++ + LRI+GKG K+RIV Sbjct: 127 AENEPDQE-PWIGARDAAVLSLLYGGGLRISEALSLTGADVPAPER-LRIKGKGGKVRIV 184 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 PL+P+VR AI Y D+CP+ L + PLFRG +G LNP + Q ++++R YLGLP + Sbjct: 185 PLIPAVRDAIHVYADICPWALTRDK--PLFRGAKGGALNPRLIQGLMQRMRAYLGLPDTA 242 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T H LRH+FATHLL+NG DLR+IQ++LGH LSTTQ+YT ++S + E++ HP Sbjct: 243 TPHALRHAFATHLLANGADLRAIQTLLGHASLSTTQVYTGIDSSR----LREVHAAAHP 297 >gi|296532590|ref|ZP_06895295.1| tyrosine recombinase XerC [Roseomonas cervicalis ATCC 49957] gi|296267081|gb|EFH13001.1| tyrosine recombinase XerC [Roseomonas cervicalis ATCC 49957] Length = 307 Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 124/306 (40%), Positives = 175/306 (57%), Gaps = 10/306 (3%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 L+ R WL LE ER S+ TL +Y D +FL FL + + ++ L ++RAF Sbjct: 8 LEARALWLDWLEKERRASRHTLAAYGADLAEFLGFLTRHLGAEPDFAALQALRPADLRAF 67 Query: 75 ISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 +++R + +G+ + R L+ I+ FL++L KR I +R K PR L Q Sbjct: 68 LAERAMRDGVGNATRARQLAAIRGFLRFLAKRHGLVPQAIAGLRGPKVVPPAPRPLTPDQ 127 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 AL + + + + + R+SA+ LLYGCGLRISEAL+L + + L+++GK Sbjct: 128 ALDVTRDA--GSVENSTVLALRDSALFTLLYGCGLRISEALALNLADAPRAGAGLKVRGK 185 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 GDK R+VP+LP+V +AI Y L PLF G RG L+ G+ QR +R RR Sbjct: 186 GDKERVVPVLPAVEQAIAAYLRL---RGGGEPDAPLFLGARGGRLDAGMAQRALRNYRRL 242 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 +GLP S T H LRHSFATHLL+ G DLRSIQ +LGH LSTTQ YT+V+S ++E Sbjct: 243 VGLPESATPHALRHSFATHLLTAGADLRSIQELLGHASLSTTQRYTSVDSAR----LLET 298 Query: 314 YDQTHP 319 + + HP Sbjct: 299 WQKAHP 304 >gi|170741374|ref|YP_001770029.1| integrase family protein [Methylobacterium sp. 4-46] gi|259710434|sp|B0UNY7|XERC_METS4 RecName: Full=Tyrosine recombinase xerC gi|168195648|gb|ACA17595.1| integrase family protein [Methylobacterium sp. 4-46] Length = 320 Score = 216 bits (550), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 127/304 (41%), Positives = 175/304 (57%), Gaps = 14/304 (4%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +WL L ER S T+++Y D RQFL A + I ++ L ++RAF++ RR Sbjct: 22 SWLTLLARERRFSPNTVEAYARDLRQFLAHRARAGTQP-DIPSLVALKPRDLRAFMAARR 80 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + IG RSL R+L+ ++SF ++L++ T S + +R+ K LPR L A+ L Sbjct: 81 AEGIGGRSLMRALASLRSFARHLEREGHGTVSALSAVRSPKVERRLPRPLPVAAAVALAS 140 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL----TPQNIMDDQSTLRIQGKGD 195 + W+ AR++A+L LLYG GLRI EAL L P +D TL I GKG Sbjct: 141 PDIRAGEDRPDWVLARDAAVLALLYGAGLRIGEALGLRRKDAPVGGLD---TLTIVGKGQ 197 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 K R+VP++ V+ A+ EY CP+ L + PLF G +G PL+P V Q + LR LG Sbjct: 198 KTRMVPVIAPVQAALAEYLAACPYALAPDG--PLFVGQKGGPLSPRVVQLAVASLRGALG 255 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 LP S T H LRHSFATHLL+ GDLR+IQ +LGH L+TTQIYT V+S +M ++ Sbjct: 256 LPDSATPHALRHSFATHLLARQGDLRAIQDLLGHASLATTQIYTKVDSAR----LMSAFE 311 Query: 316 QTHP 319 HP Sbjct: 312 AAHP 315 >gi|114328726|ref|YP_745883.1| site-specific tyrosine recombinase XerC [Granulibacter bethesdensis CGDNIH1] gi|114316900|gb|ABI62960.1| integrase/recombinase (XerC/CodV family) [Granulibacter bethesdensis CGDNIH1] Length = 300 Score = 216 bits (549), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 116/304 (38%), Positives = 174/304 (57%), Gaps = 11/304 (3%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 + R++W+ L E+ + LT ++Y D FL FLA + + + + +L ++ RA++ Sbjct: 5 QARRDWIDWLRDEKRAAPLTCRAYGDDVAAFLGFLATHQGAEPDMAMLGRLGLSDFRAWL 64 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 + + G+ + R L+ I+SF +L++R S + +R K LPRAL++ QAL Sbjct: 65 ASEAVKGAGNATRARHLASIRSFFHFLRQRHALENSALPLLRTPKAKPPLPRALDQTQAL 124 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 ++ + E + AR++A+ LLYGCGLR+ EAL L + D TLRI GKG Sbjct: 125 AAARDI--GEASENPFTQARDTALFALLYGCGLRLGEALGLMVGDSQHD--TLRITGKGG 180 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 + R+VP++PSVR ++ ++ P PLF G+RG LNPGV QR +RQ R Sbjct: 181 RQRMVPVIPSVRTSLSDWLRFHPVP---EASAPLFVGVRGARLNPGVAQRTLRQFRTLYN 237 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 LP T H LRHSFATHLL+ G DLR+IQ +LGH LSTTQ YT V+ ++ ++ Sbjct: 238 LPEHATPHALRHSFATHLLAAGADLRAIQDLLGHASLSTTQRYTQVDQAQ----LLAVWQ 293 Query: 316 QTHP 319 + HP Sbjct: 294 KAHP 297 >gi|329890948|ref|ZP_08269291.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568] gi|328846249|gb|EGF95813.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568] Length = 304 Score = 215 bits (548), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 128/301 (42%), Positives = 174/301 (57%), Gaps = 10/301 (3%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL++L ER LS TL++Y R +L FL + + + ++ E RA +++RR+ Sbjct: 10 WLEHLAHERRLSPRTLEAYGHIGRLYLAFLERHRGGPQSAADLGSVTAAEARAHLAERRS 69 Query: 81 --QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + RSL ++L+ I+ F +L +R + +R K SLPR ++E QA L+ Sbjct: 70 GDRPLNARSLSQTLAAIRGFHAFLDRRLGVATPQLALVRGPKVKPSLPRPVSEDQAKGLL 129 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 E W AR+ A+L LLYGCGLRISEALSL + +S LRI GKGDK R Sbjct: 130 HEPEADPDME-PWEAARDRAVLTLLYGCGLRISEALSLKRSDAPLPES-LRITGKGDKTR 187 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +VP+LP VR+A Y L PF ++ + L FR RG PL+ Q +++LR LGLP Sbjct: 188 MVPVLPEVREATQAYLALQPFVIDADQAL--FRARRGGPLSARHVQATVQRLRGRLGLPA 245 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 S T H LRHSFATHLL G DLRSIQ +LGH LSTTQ YT V++ ++ Y Q H Sbjct: 246 SATPHALRHSFATHLLGAGADLRSIQELLGHASLSTTQKYTQVDAAR----LLAAYAQAH 301 Query: 319 P 319 P Sbjct: 302 P 302 >gi|218513302|ref|ZP_03510142.1| site-specific tyrosine recombinase XerC [Rhizobium etli 8C-3] Length = 210 Score = 215 bits (548), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 104/216 (48%), Positives = 144/216 (66%), Gaps = 8/216 (3%) Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163 K+ + + +R+ K+ SLP+ L++ QA+T+V N H+ WI AR++A++ LL Sbjct: 1 KKGLVNAAGAAAIRSPKQPKSLPKPLSDTQAITVVSNEA--QLHDEPWIAARDAAVMTLL 58 Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223 YGCGLRISEAL L P ++ +TLRI GKG+K R+VPLLP V A+ +Y LCP+ +L Sbjct: 59 YGCGLRISEALDLVPADLPKGAATLRITGKGNKTRLVPLLPVVFDAVEKYRALCPY--HL 116 Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283 PLFRG RG L + QR +++LR GLP + T H LRHSFATHLL+ GGDLR+I Sbjct: 117 ENDAPLFRGARGGKLQAAIIQRAMQKLRSAFGLPETATPHALRHSFATHLLAGGGDLRTI 176 Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 Q +LGH LSTTQ+YT V++ ++E+YD+ HP Sbjct: 177 QELLGHASLSTTQVYTGVDASR----LLEVYDRAHP 208 >gi|157804202|ref|YP_001492751.1| site-specific tyrosine recombinase XerC [Rickettsia canadensis str. McKiel] gi|166918899|sp|A8F033|XERC_RICCK RecName: Full=Tyrosine recombinase xerC gi|157785465|gb|ABV73966.1| tyrosine recombinase [Rickettsia canadensis str. McKiel] Length = 305 Score = 215 bits (547), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 120/304 (39%), Positives = 181/304 (59%), Gaps = 19/304 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W Q L +++ S T+ SY D + FL F+ +Y + +TI I+ IR++++KR Sbjct: 13 WQQYLILQKNYSHHTVVSYNNDLKHFLEFMHYYNSDLVTINHIKTADIRLIRSWLAKRNC 72 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 S+ R LS +K+F K+L+K I ++++ KK+ LP++L+E D+ Sbjct: 73 NNFTTSSISRGLSAVKNFYKFLEKTTQLNSHIIFSIKSPKKTKLLPKSLSE-------DD 125 Query: 141 VLLHTSH-----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 V++ H KW++ RN A+L L+Y GLRISEALS+T + + + +RI GKG Sbjct: 126 VVISLKHIEEYGNVKWVELRNKALLVLIYATGLRISEALSITKLH-LQNLEFIRIIGKGS 184 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 K RI+P LP V+ I +Y ++ P+ L N P+FRG +GK L P VF R + +L+R+ G Sbjct: 185 KERIIPWLPIVKNLITQYLEILPYKLGEN--EPIFRGKQGKKLQPTVFNRELIKLKRFYG 242 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 LP TAH+ RHSFA+HLL +G DLRSIQ +LGH LSTTQ YT + K+ ++ +Y Sbjct: 243 LPEHLTAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTKTSIKH----LVSVYT 298 Query: 316 QTHP 319 +P Sbjct: 299 SAYP 302 >gi|51473985|ref|YP_067742.1| site-specific tyrosine recombinase XerC [Rickettsia typhi str. Wilmington] gi|81389926|sp|Q68VT2|XERC_RICTY RecName: Full=Tyrosine recombinase xerC gi|51460297|gb|AAU04260.1| DNA integrase/recombinase XerC [Rickettsia typhi str. Wilmington] Length = 305 Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 124/312 (39%), Positives = 186/312 (59%), Gaps = 22/312 (7%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 EL+K+ W + L ++R S T+ +Y D + FL F+ +Y E +TI I+ + IR Sbjct: 8 ELIKQ---WQKYLILQRNYSNNTVIAYNNDLKHFLEFMNYYNSELVTINHIKTVDIRLIR 64 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 ++++KR+ + S+ R LS +K+F K+L+K + I ++++ KK+ LP+AL+ Sbjct: 65 SWLAKRKYENFTASSIARGLSTVKNFYKFLEKTILLNSHIIFSIKSPKKAKLLPKALS-- 122 Query: 133 QALTLVDNVLLHTSH-----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 VD+VL+ H KW++ RN A+L L+Y GLRISEALS+T + + + Sbjct: 123 -----VDDVLISLEHIEGYGNVKWVELRNKALLVLIYAAGLRISEALSITKLH-LQNLEF 176 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 ++I GKG K RI+P LP R I +Y + P+ L+ N P+FRG GK L P VF R + Sbjct: 177 IKIIGKGSKERIIPWLPFARNLITKYLGILPYKLDEN--EPIFRGKHGKKLQPSVFNREL 234 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 +L+R GLP TAH+ RHSFA+HLL G DLRSIQ +LGH LSTTQ YT + K+ Sbjct: 235 IKLKRVYGLPEYLTAHSFRHSFASHLLEYGADLRSIQELLGHKSLSTTQKYTQTSIKH-- 292 Query: 308 DWMMEIYDQTHP 319 + +Y+ +P Sbjct: 293 --LEAVYNTAYP 302 >gi|170747361|ref|YP_001753621.1| integrase family protein [Methylobacterium radiotolerans JCM 2831] gi|170653883|gb|ACB22938.1| integrase family protein [Methylobacterium radiotolerans JCM 2831] Length = 326 Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 122/300 (40%), Positives = 174/300 (58%), Gaps = 8/300 (2%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W++ L ER +S T+++Y D RQFL LA + TI + L +IR F++ RR Sbjct: 30 WIEALARERRMSSNTVEAYGRDLRQFLHHLA-SRQGTPTIPMLIGLKVRDIRGFMAARRA 88 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 ++ RSL R L+G++SF ++L++ T S + +R+ K LPR L A+ L D Sbjct: 89 DEVSGRSLMRMLAGLRSFARFLEREGFGTVSALGGVRSPKVPRRLPRPLPVSAAVALTDT 148 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRI 199 + W+ AR++A+L LLYG GLRISEAL L+ ++ + + + GKG K R+ Sbjct: 149 AIRAGEEREPWVLARDAAVLALLYGAGLRISEALGLSRRDAPLPGVDQVTVLGKGGKQRM 208 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 VP+LP V +A+ +Y CP L L F G RG PL+P + Q + + R LGLP S Sbjct: 209 VPILPVVAQAVADYVAACPLPLPPEGPL--FLGARGGPLSPRIIQYTVARARGALGLPES 266 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T H LRHSFATHLL+ G+LR+IQ +LGH LSTTQ+YT V++ +M Y HP Sbjct: 267 ATPHALRHSFATHLLARQGELRAIQELLGHASLSTTQLYTQVDAAR----LMSAYAAAHP 322 >gi|326402863|ref|YP_004282944.1| tyrosine recombinase XerC [Acidiphilium multivorum AIU301] gi|325049724|dbj|BAJ80062.1| tyrosine recombinase XerC [Acidiphilium multivorum AIU301] Length = 313 Score = 213 bits (541), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 118/302 (39%), Positives = 170/302 (56%), Gaps = 9/302 (2%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 R +L L ER + LT+ +Y D +FL F+ + + T + LS + RA+++K Sbjct: 17 RVEFLDFLAGERRAAALTVSTYGADLAEFLGFVTRHIGAEPTGADLAALSLADFRAWLAK 76 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 + +G+ + + LS ++SF ++L++R +R K LPRAL A + Sbjct: 77 AASDGVGNATRAKKLSAVRSFFRWLRQRHGMINEAPGLLRTPKSRRPLPRALTAPDAAAV 136 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 VD+ L + + AR++A++ LLYG GLRI EAL L ++ + + L ++GKG + Sbjct: 137 VDS--LGDDAASPALAARDTALMALLYGAGLRIHEALGLNIGDLPPEGAPLSVRGKGGRQ 194 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 RIVPLLP +R+ I + P PLF G RG LNPGV QR +R RR GLP Sbjct: 195 RIVPLLPVLRREIASWLRHHPAP---TPDAPLFLGARGARLNPGVVQRRLRDFRRLNGLP 251 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T H LRHSFATHLL+NG DLR+IQ +LGH LSTTQ YT V++ D +M ++ Sbjct: 252 EHATPHALRHSFATHLLANGADLRAIQELLGHASLSTTQRYTAVDA----DRLMAVWQAA 307 Query: 318 HP 319 HP Sbjct: 308 HP 309 >gi|296446249|ref|ZP_06888196.1| integrase family protein [Methylosinus trichosporium OB3b] gi|296256286|gb|EFH03366.1| integrase family protein [Methylosinus trichosporium OB3b] Length = 339 Score = 212 bits (540), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 130/320 (40%), Positives = 184/320 (57%), Gaps = 14/320 (4%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 E+ + Q+WL L E+ S+ TL +Y D R FL FLA + + L+ ++R Sbjct: 30 EIARAAQDWLDYLSGEKRCSRHTLAAYARDARFFLAFLAEHKGAPANAALLGALAPADLR 89 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 AF+++RR Q + +RSL R L+ ++S +++L+KR + +R K+ ++LP+AL Sbjct: 90 AFMARRRAQGVENRSLLRGLAAVRSLMRFLEKRDLAKTDVFAAIRAPKRPHALPKALGVA 149 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL----TPQNIMDDQSTL 188 A LVD WI AR++A L LLYG GLRISEALS+ P +D + Sbjct: 150 DARELVDPATRAGEAREPWIIARDAAALALLYGAGLRISEALSIDRDAAPIGKID---RV 206 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 I GKG K R+ P++ VR+AI +Y LCP +L+ PLF G RG L+P + Q + Sbjct: 207 TIHGKGGKTRVAPIIEPVRRAIEDYIRLCPHELSGG---PLFIGARGGRLSPRILQLAME 263 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 ++R LGLP S T H LRHSFATHLL GGDLRSIQ +LGH LSTTQIY V+ + Sbjct: 264 RMRGALGLPDSATPHALRHSFATHLLGRGGDLRSIQELLGHASLSTTQIYAAVDKQR--- 320 Query: 309 WMMEIYDQTHPSITQKDKKN 328 ++E Y HP + + + Sbjct: 321 -LLEAYRSAHPRAGRGESRE 339 >gi|218458541|ref|ZP_03498632.1| site-specific tyrosine recombinase XerC [Rhizobium etli Kim 5] Length = 198 Score = 212 bits (540), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 103/204 (50%), Positives = 140/204 (68%), Gaps = 8/204 (3%) Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175 +R+ K+ SLP+ L++ QA+T+V N H+ WI AR++A++ LLYGCGLRISEAL Sbjct: 1 IRSPKQPKSLPKPLSDTQAITVVSNEA--QLHDEPWIAARDAAVMTLLYGCGLRISEALD 58 Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235 L P ++ +TLRI GKG+K R+VPLLP V A+ +Y LCP+ +L PLFRG RG Sbjct: 59 LVPADLPKGAATLRITGKGNKTRLVPLLPVVFDAVEKYRTLCPY--HLESGAPLFRGARG 116 Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 L + QR +++LR GLP + T H LRHSFATHLL+ GGDLR+IQ +LGH LSTT Sbjct: 117 GKLQAAIIQRAMQKLRSAFGLPETATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTT 176 Query: 296 QIYTNVNSKNGGDWMMEIYDQTHP 319 Q+YT V++ ++E+YD+ HP Sbjct: 177 QVYTGVDASR----LLEVYDRAHP 196 >gi|148260195|ref|YP_001234322.1| site-specific tyrosine recombinase XerC [Acidiphilium cryptum JF-5] gi|146401876|gb|ABQ30403.1| phage integrase family protein [Acidiphilium cryptum JF-5] Length = 313 Score = 212 bits (539), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 118/302 (39%), Positives = 170/302 (56%), Gaps = 9/302 (2%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 R +L L ER + LT+ +Y D +FL F+ + + T + LS + RA+++K Sbjct: 17 RVEFLDFLVGERRAAALTVSTYGADLAEFLGFVTRHIGAEPTGADLAALSLADFRAWLAK 76 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 + +G+ + + LS ++SF ++L++R +R K LPRAL A + Sbjct: 77 AASDGVGNATRAKKLSAVRSFFRWLRQRHGMINEAPGLLRTPKSRRPLPRALTAPDAAAV 136 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 VD+ L + + AR++A++ LLYG GLRI EAL L ++ + + L ++GKG + Sbjct: 137 VDS--LGDDAASPALAARDTALMALLYGAGLRIHEALGLNIGDLPPEGAPLSVRGKGGRQ 194 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 RIVPLLP +R+ I + P PLF G RG LNPGV QR +R RR GLP Sbjct: 195 RIVPLLPVLRREIASWLRHHPAP---TPDAPLFLGARGARLNPGVVQRRLRDFRRLNGLP 251 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T H LRHSFATHLL+NG DLR+IQ +LGH LSTTQ YT V++ D +M ++ Sbjct: 252 EHATPHALRHSFATHLLANGADLRAIQELLGHASLSTTQRYTAVDA----DRLMAVWQAA 307 Query: 318 HP 319 HP Sbjct: 308 HP 309 >gi|67459687|ref|YP_247311.1| site-specific tyrosine recombinase XerC [Rickettsia felis URRWXCal2] gi|75535922|sp|Q4UJZ3|XERC_RICFE RecName: Full=Tyrosine recombinase xerC gi|67005220|gb|AAY62146.1| Tyrosine recombinase XerC [Rickettsia felis URRWXCal2] Length = 305 Score = 212 bits (539), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 119/304 (39%), Positives = 179/304 (58%), Gaps = 19/304 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W + L+++R S T+ SY D + FL F+ +Y E +TI I+ IR++++KR Sbjct: 13 WQKYLDLQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRLIRSWLAKRNC 72 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 S+ R LS +K+F ++L+K I ++++ KK+ LP+AL+E D+ Sbjct: 73 DNFTTSSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSE-------DD 125 Query: 141 VLLHTSH-----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 V++ H KW++ RN A+L L+Y GLRISEALS+T + + + +RI GKG Sbjct: 126 VVISLEHIEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLH-LQNLEFIRIIGKGS 184 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 K RI+P LP + I +Y ++ P+ L N P+FRG +GK L P VF R + +L+ + G Sbjct: 185 KERIIPWLPIAKNLITQYLEILPYKLGDN--EPIFRGKQGKKLQPPVFNRELIKLKHFYG 242 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 LP TAH+ RHSFA+HLL +G DLRSIQ +LGH LSTTQ YT + K+ + +Y Sbjct: 243 LPQHLTAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTKTSIKH----LEAVYT 298 Query: 316 QTHP 319 +P Sbjct: 299 TAYP 302 >gi|16124599|ref|NP_419163.1| site-specific tyrosine recombinase XerC [Caulobacter crescentus CB15] gi|221233288|ref|YP_002515724.1| site-specific tyrosine recombinase XerC [Caulobacter crescentus NA1000] gi|13421495|gb|AAK22331.1| integrase/recombinase XerC, putative [Caulobacter crescentus CB15] gi|220962460|gb|ACL93816.1| integrase/recombinase, XerC-CodV family [Caulobacter crescentus NA1000] Length = 304 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 123/304 (40%), Positives = 173/304 (56%), Gaps = 16/304 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR- 79 WL +L +ER S T+++Y + +L FL + E +++ + ++S ++R +++ RR Sbjct: 10 WLDHLTLERRASPRTVRAYGDNVLAYLNFLEAHRGEALSLSALAEISAADLRGYLAWRRQ 69 Query: 80 -TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + RSL ++LS I++F +YL +R + + +R + LPR ++E QA L+ Sbjct: 70 GEHALAPRSLSQALSSIRAFHRYLDQRHGVANAAVDLVRGPRLKIGLPRPVSEDQARDLI 129 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ---STLRIQGKGD 195 T + W AR+ A+L LL+GCGLRISEALSL M D +TLRI GKG Sbjct: 130 TQAAEDTERD-PWETARDEAVLTLLWGCGLRISEALSLR----MSDAPLAATLRITGKGG 184 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 K RIVP+L +VR AI Y D PF NL LFR RG PL+P Q ++ LR LG Sbjct: 185 KTRIVPVLDAVRDAIEAYLDELPF--NLAPDEALFRAKRGGPLSPRHVQGLVQTLRGRLG 242 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 L T H RH+FATHLL G DLR+IQ +LGH LSTTQ YT V++ ++ Y Sbjct: 243 LSDRVTPHAFRHAFATHLLGAGADLRAIQDLLGHASLSTTQRYTQVDAAG----LLAAYQ 298 Query: 316 QTHP 319 HP Sbjct: 299 AAHP 302 >gi|157964965|ref|YP_001499789.1| site-specific tyrosine recombinase XerC [Rickettsia massiliae MTU5] gi|166918900|sp|A8F2V6|XERC_RICM5 RecName: Full=Tyrosine recombinase xerC gi|157844741|gb|ABV85242.1| Tyrosine recombinase XerC [Rickettsia massiliae MTU5] Length = 305 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 119/304 (39%), Positives = 178/304 (58%), Gaps = 19/304 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W + L ++R S T+ SY D + FL F+ +Y E +TI I+ IR++++KR Sbjct: 13 WQKYLVLQRNYSNHTVISYNNDLKHFLEFMNYYNSEFVTINHIKTADIRLIRSWLAKRHC 72 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 S+ R LS +K+F ++L+K I ++++ KK+ LP+AL+E D+ Sbjct: 73 DNFTTSSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSE-------DD 125 Query: 141 VLLHTSH-----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 V++ H KW++ RN A+L L+Y GLRISEALS+T + + + +RI GKG Sbjct: 126 VVISLEHIEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLH-LQNLEFIRIIGKGS 184 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 K RI+P LP + I +Y ++ P+ L N P+FRG +GK L P VF R + +L+ + G Sbjct: 185 KERIIPWLPIAKNLITQYLEILPYKLGDN--EPIFRGKQGKKLQPPVFNRELIKLKHFYG 242 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 LP TAH+ RHSFA+HLL +G DLRSIQ +LGH LSTTQ YT + K+ + +Y Sbjct: 243 LPQHLTAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTKTSIKH----LEAVYT 298 Query: 316 QTHP 319 +P Sbjct: 299 TAYP 302 >gi|157829099|ref|YP_001495341.1| site-specific tyrosine recombinase XerC [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933823|ref|YP_001650612.1| site-specific tyrosine recombinase XerC [Rickettsia rickettsii str. Iowa] gi|166918901|sp|A8GTV8|XERC_RICRS RecName: Full=Tyrosine recombinase xerC gi|189030082|sp|B0BVE6|XERC_RICRO RecName: Full=Tyrosine recombinase xerC gi|157801580|gb|ABV76833.1| site-specific tyrosine recombinase XerC [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908910|gb|ABY73206.1| integrase/recombinase (XerC/CodV family) [Rickettsia rickettsii str. Iowa] Length = 305 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 118/304 (38%), Positives = 179/304 (58%), Gaps = 19/304 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W + L ++R S T+ SY D + FL F+ +Y E +TI I+ IR++++KR Sbjct: 13 WQKYLVLQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRLIRSWLAKRNC 72 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 S+ R LS +K+F ++L+K I ++++ KK+ LP+AL+E D+ Sbjct: 73 DNFAASSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSE-------DD 125 Query: 141 VLLHTSH-----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 V++ H KW++ RN A+L L+Y GLRISEALS+T + + + +RI GKG Sbjct: 126 VVISLEHIEEYGNIKWVELRNKALLVLIYASGLRISEALSITKLH-LQNLEFIRIIGKGS 184 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 K RI+P LP + I +Y ++ P+ L N P+FRG +GK L P VF R + +L+ + G Sbjct: 185 KERIIPWLPIAKNLITQYLEILPYKLGDN--EPIFRGKQGKKLQPPVFNRELIKLKHFYG 242 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 LP TAH+ RHSFA+HLL +G DLRS+Q++LGH LSTTQ YT + K+ + +Y Sbjct: 243 LPQHLTAHSFRHSFASHLLEHGADLRSLQALLGHKSLSTTQNYTKTSIKH----LEAVYT 298 Query: 316 QTHP 319 +P Sbjct: 299 TAYP 302 >gi|157827676|ref|YP_001496740.1| site-specific tyrosine recombinase XerC [Rickettsia bellii OSU 85-389] gi|166918898|sp|A8GXV3|XERC_RICB8 RecName: Full=Tyrosine recombinase xerC gi|157802980|gb|ABV79703.1| site-specific tyrosine recombinase XerC [Rickettsia bellii OSU 85-389] Length = 305 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 116/299 (38%), Positives = 182/299 (60%), Gaps = 9/299 (3%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W + L +++ S TL SY D + FL F+ +Y + +T+ I+ +R++++KR+ Sbjct: 13 WQKYLSLQKNYSNHTLISYNNDLKHFLEFMNYYNSDIVTMDYIKAADIRLMRSWLAKRKC 72 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 S+ R LS IK+F K+L+K + ++++ KKS LP+AL+E++ +D+ Sbjct: 73 DNFVTSSIARGLSAIKNFYKFLEKTAELHNHVVFSIKSPKKSKLLPKALSEEEVNISLDH 132 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + + + ++WI+ RN A+L L+Y GLRISEALS+T ++ + + ++I GKG K R++ Sbjct: 133 IEEYGN--SQWIEIRNKALLVLIYASGLRISEALSITKLHLQNLE-FIKIMGKGSKERVI 189 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 P L R I EY + P++L + P+FRG +GK L P VF R + +L+R+ GLP Sbjct: 190 PWLAIARNLITEYLEKLPYELKDD--EPIFRGKQGKKLQPPVFNRELIKLKRFYGLPEHL 247 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 +AH+ RHSFA+HLL NG DLRSIQ +LGH LSTTQ YT + K+ + Y HP Sbjct: 248 SAHSFRHSFASHLLENGADLRSIQELLGHKSLSTTQSYTKTSIKH----LETAYVTAHP 302 >gi|238650850|ref|YP_002916705.1| site-specific tyrosine recombinase XerC [Rickettsia peacockii str. Rustic] gi|259710438|sp|C4K256|XERC_RICPU RecName: Full=Tyrosine recombinase xerC gi|238624948|gb|ACR47654.1| site-specific tyrosine recombinase XerC [Rickettsia peacockii str. Rustic] Length = 305 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 118/304 (38%), Positives = 178/304 (58%), Gaps = 19/304 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W + L ++R S T+ SY D + FL F+ +Y E +TI I+ IR++++KR Sbjct: 13 WQKYLVLQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRLIRSWLAKRNC 72 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 S+ R LS +K+F ++L+K I ++++ KK+ LP+AL+E D+ Sbjct: 73 DNFTASSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSE-------DD 125 Query: 141 VLLHTSH-----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 V++ H KW++ RN A+L L+Y GLRISEALS+T + + + +RI GKG Sbjct: 126 VVISLEHIEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLH-LQNLEFIRIIGKGS 184 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 K RI+P LP + I +Y ++ P+ L N P+FRG +GK L P VF R + +L+ + G Sbjct: 185 KERIIPWLPIAKNLITQYLEILPYKLGDN--EPIFRGKQGKELQPSVFNRELIKLKHFYG 242 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 LP TAH+ RHSFA+HLL +G DLRS+Q +LGH LSTTQ YT + K+ + +Y Sbjct: 243 LPQHLTAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQNYTKTSIKH----LEAVYT 298 Query: 316 QTHP 319 +P Sbjct: 299 TAYP 302 >gi|229587180|ref|YP_002845681.1| site-specific tyrosine recombinase XerC [Rickettsia africae ESF-5] gi|259710437|sp|C3PLU8|XERC_RICAE RecName: Full=Tyrosine recombinase xerC gi|228022230|gb|ACP53938.1| Tyrosine recombinase XerC [Rickettsia africae ESF-5] Length = 305 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 119/304 (39%), Positives = 178/304 (58%), Gaps = 19/304 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W + L ++R S T+ SY D + FL F+ +Y E +TI I+ IR++++KR Sbjct: 13 WQKYLVLQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRLIRSWLAKRNC 72 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 S+ R LS +K+F ++L+K I ++++ KK+ LP+AL+E D+ Sbjct: 73 DNFTASSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSE-------DD 125 Query: 141 VLLHTSH-----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 V++ H KWI+ RN A+L L+Y GLRISEALS+T + + + +RI GKG Sbjct: 126 VVISLEHIEEYGNVKWIELRNKALLVLIYASGLRISEALSITKLH-LQNLEFIRIIGKGS 184 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 K RI+P LP + I +Y ++ P+ L N P+FRG +GK L P VF R + +L+ + G Sbjct: 185 KERIIPWLPIAKNLITQYLEILPYKLGDN--EPIFRGKQGKKLQPPVFNRELIKLKHFYG 242 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 LP TAH+ RHSFA+HLL +G DLRS+Q +LGH LSTTQ YT + K+ + +Y Sbjct: 243 LPQHLTAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQSYTKTSIKH----LEAVYT 298 Query: 316 QTHP 319 +P Sbjct: 299 TAYP 302 >gi|91204992|ref|YP_537347.1| site-specific tyrosine recombinase XerC [Rickettsia bellii RML369-C] gi|122990944|sp|Q1RK56|XERC_RICBR RecName: Full=Tyrosine recombinase xerC gi|91068536|gb|ABE04258.1| Tyrosine recombinase XerC [Rickettsia bellii RML369-C] Length = 305 Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 116/299 (38%), Positives = 182/299 (60%), Gaps = 9/299 (3%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W + L +++ S TL SY D + FL F+ +Y + +T+ I+ +R++++KR+ Sbjct: 13 WQKYLSLQKNYSNHTLISYNNDLKHFLEFMNYYNSDIVTMDYIKAADIRLMRSWLAKRKC 72 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 S+ R LS IK+F K+L+K + ++++ KKS LP+AL+E++ +D+ Sbjct: 73 DNFVTSSIARGLSAIKNFYKFLEKTAELHNHVVFSIKSPKKSKLLPKALSEEEVNISLDH 132 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + + + ++WI+ RN A+L L+Y GLRISEALS+T ++ + + ++I GKG K R++ Sbjct: 133 IEEYGN--SQWIEIRNKALLVLIYASGLRISEALSITKLHLQNLE-FIKIMGKGSKERVI 189 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 P L R I EY + P++L + P+FRG +GK L P VF R + +L+R+ GLP Sbjct: 190 PWLAIARNLITEYLEKLPYELKDD--EPIFRGKQGKKLQPPVFNRELIKLKRFYGLPEYL 247 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 +AH+ RHSFA+HLL NG DLRSIQ +LGH LSTTQ YT + K+ + Y HP Sbjct: 248 SAHSFRHSFASHLLENGADLRSIQELLGHKSLSTTQSYTKTSIKH----LETAYVTAHP 302 >gi|15893191|ref|NP_360905.1| site-specific tyrosine recombinase XerC [Rickettsia conorii str. Malish 7] gi|34222950|sp|Q92G55|XERC_RICCN RecName: Full=Tyrosine recombinase xerC gi|15620404|gb|AAL03806.1| integrase/recombinase [Rickettsia conorii str. Malish 7] Length = 305 Score = 210 bits (534), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 118/304 (38%), Positives = 178/304 (58%), Gaps = 19/304 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W + L ++R S T+ SY D + FL F+ +Y E +TI I+ IR++++KR Sbjct: 13 WQKYLALQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRLIRSWLAKRNC 72 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 S+ R LS +K+F ++L+K I ++++ KK+ LP+AL+E D+ Sbjct: 73 DNFTASSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSE-------DD 125 Query: 141 VLLHTSH-----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 V++ H KW++ RN A+L L+Y GLRISEALS+T + + + +RI GKG Sbjct: 126 VVISLEHIEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLH-LQNLEFIRIIGKGS 184 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 K RI+P LP + I +Y ++ P+ L N P+FRG +GK L P VF R + +L+ + G Sbjct: 185 KERIIPWLPIAKNLITQYLEILPYKLGDN--EPIFRGKQGKKLQPPVFNRELIKLKHFYG 242 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 LP TAH+ RHSFA+HLL +G DLRS+Q +LGH LSTTQ YT + K+ + +Y Sbjct: 243 LPQHLTAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQNYTKTSIKH----LEAVYT 298 Query: 316 QTHP 319 +P Sbjct: 299 TAYP 302 >gi|239946786|ref|ZP_04698539.1| tyrosine recombinase XerC [Rickettsia endosymbiont of Ixodes scapularis] gi|239921062|gb|EER21086.1| tyrosine recombinase XerC [Rickettsia endosymbiont of Ixodes scapularis] Length = 305 Score = 209 bits (533), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 119/304 (39%), Positives = 178/304 (58%), Gaps = 19/304 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W + L ++R S T+ SY D + FL F+ +Y E +TI I+ IR++++KR Sbjct: 13 WQKYLVLQRNCSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRLIRSWLAKRNC 72 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 S+ R LS +K+F ++L+K I ++++ KK+ LP+AL+E D+ Sbjct: 73 NNFTTSSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSE-------DD 125 Query: 141 VLLHTSH-----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 V++ H KW++ RN A+L L+Y GLRISEALS+T + + + +RI GKG Sbjct: 126 VVISLEHIEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLH-LQNLEFIRIIGKGS 184 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 K RI+P LP + I +Y ++ P+ L N P+FRG +GK L P VF R + +L+ + G Sbjct: 185 KERIIPWLPITKNLITKYLEILPYKLGDN--EPIFRGKQGKKLQPPVFNRELIKLKHFYG 242 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 LP TAH+ RHSFA+HLL +G DLRSIQ +LGH LSTTQ YT + K+ + +Y Sbjct: 243 LPQHLTAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTKTSIKH----LEAVYT 298 Query: 316 QTHP 319 +P Sbjct: 299 TAYP 302 >gi|34581137|ref|ZP_00142617.1| integrase/recombinase [Rickettsia sibirica 246] gi|28262522|gb|EAA26026.1| integrase/recombinase [Rickettsia sibirica 246] Length = 305 Score = 209 bits (533), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 118/304 (38%), Positives = 178/304 (58%), Gaps = 19/304 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W + L ++R S T+ SY D + FL F+ +Y E +TI I+ IR++++KR Sbjct: 13 WQKYLVLQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRLIRSWLAKRNC 72 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 S+ R LS +K+F ++L+K I ++++ KK+ LP+AL+E D+ Sbjct: 73 DNFTASSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSE-------DD 125 Query: 141 VLLHTSH-----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 V++ H KW++ RN A+L L+Y GLRISEALS+T + + + +RI GKG Sbjct: 126 VVISLEHIEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLH-LQNLEFIRIIGKGS 184 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 K RI+P LP + I +Y ++ P+ L N P+FRG +GK L P VF R + +L+ + G Sbjct: 185 KERIIPWLPIAKNLITQYLEILPYKLGDN--EPIFRGKQGKKLQPPVFNRELIKLKHFYG 242 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 LP TAH+ RHSFA+HLL +G DLRS+Q +LGH LSTTQ YT + K+ + +Y Sbjct: 243 LPQHLTAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQNYTKTSIKH----LEAVYT 298 Query: 316 QTHP 319 +P Sbjct: 299 NAYP 302 >gi|296284090|ref|ZP_06862088.1| phage integrase [Citromicrobium bathyomarinum JL354] Length = 299 Score = 209 bits (532), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 113/301 (37%), Positives = 171/301 (56%), Gaps = 18/301 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI--QTIRQLSYTEIRAFISKR 78 W +L ER LS T+++Y + L EE Q + +L +RA +++R Sbjct: 5 WESHLATERRLSPHTVRAYIRAAERLL-------EETPATDWQGVARLGAPALRAQLARR 57 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + +RS R LS +++FL + + ++ +R + +LPR + +AL L Sbjct: 58 RADGLSNRSAARELSALRAFLAFARAEAGFDDAQAPRLRGPRIKRTLPRPVTPDEALHLA 117 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + + +W R+ A+L LLYG G+R+ EALSLT ++ + T+R+ GKG K R Sbjct: 118 ERIG--EERREEWTGLRDRAVLLLLYGAGMRLGEALSLTGEHAQIGE-TIRVTGKGGKTR 174 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 + P+LP++R AI Y CP DL + PLFRG RG PL+PG+ Q+ + Q+R +GLP Sbjct: 175 VAPILPAIRSAIAAYVAACPHDLAPDK--PLFRGQRGGPLSPGLVQKAMAQVRGEIGLPA 232 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + T H LRHSFATHLL G DLRS+Q +LGH L +TQIYT V++ + +++ Y H Sbjct: 233 NATPHALRHSFATHLLGAGADLRSLQELLGHASLGSTQIYTEVDAAS----LLDTYRNAH 288 Query: 319 P 319 P Sbjct: 289 P 289 >gi|15604648|ref|NP_221166.1| site-specific tyrosine recombinase XerC [Rickettsia prowazekii str. Madrid E] gi|34223090|sp|Q9ZCE0|XERC_RICPR RecName: Full=Tyrosine recombinase xerC gi|3861343|emb|CAA15242.1| PROBABLE INTEGRASE/RECOMBINASE RIPX (xerC) [Rickettsia prowazekii] gi|292572467|gb|ADE30382.1| Tyrosine recombinase XerC [Rickettsia prowazekii Rp22] Length = 305 Score = 208 bits (530), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 119/312 (38%), Positives = 186/312 (59%), Gaps = 22/312 (7%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 EL+K+ W + L +++ S T+ +Y D + FL F+ +Y E +T+ I+ IR Sbjct: 8 ELIKQ---WQKYLILQKNYSNNTVIAYNNDLKHFLEFMNYYNSELVTLNHIKTADIRLIR 64 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 ++++KR+ + S+ R LS +K+F K+L+K + I ++++ KK+ LP+ L+ Sbjct: 65 SWLAKRKCENFTASSIARGLSTVKNFYKFLEKTLLLNNHIIFSIKSPKKAKLLPKGLS-- 122 Query: 133 QALTLVDNVLLHTSH-----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 VD+VL+ H KW++ RN A++ L+Y GLRISEALS+T + + + Sbjct: 123 -----VDDVLISLEHIEEYGNVKWVELRNKALIVLIYAAGLRISEALSITKLH-LQNLEF 176 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 ++I GKG K RI+P LP + I +Y ++ P+ L+ N P+FRG +GK L P VF R + Sbjct: 177 IKIIGKGSKERIIPWLPLTKNLITKYLEILPYKLDEN--EPIFRGRQGKKLQPSVFNREL 234 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 +L+R GLP TAH+ RHSFA+HLL G DLRSIQ +LGH LSTTQ YT + K+ Sbjct: 235 IKLKRIYGLPEYLTAHSFRHSFASHLLEYGADLRSIQELLGHKSLSTTQKYTQTSIKH-- 292 Query: 308 DWMMEIYDQTHP 319 + +Y+ +P Sbjct: 293 --LEAVYNTAYP 302 >gi|295691144|ref|YP_003594837.1| integrase family protein [Caulobacter segnis ATCC 21756] gi|295433047|gb|ADG12219.1| integrase family protein [Caulobacter segnis ATCC 21756] Length = 309 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 119/301 (39%), Positives = 175/301 (58%), Gaps = 10/301 (3%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL +L +ER S T+++Y + +L FL + E +++ + ++S ++R +++ RR Sbjct: 15 WLDHLTLERRASPRTVRAYGDNVLAYLNFLENHRGEALSVAALGEISAADLRGYLAFRRQ 74 Query: 81 QK--IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + RS+ ++LS I++F +Y+ +R + I +R + LPR ++E QA L+ Sbjct: 75 GENALAPRSISQALSSIRAFHRYVDQRHGVANAAIGLVRGPRLKIGLPRPVSEDQARDLI 134 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 T E W AR+ A+L LL+GCGLRISEALSLT ++ + LRI GKG K R Sbjct: 135 FEASGDTERE-PWETARDEAVLTLLWGCGLRISEALSLTWSDV-PLGAALRITGKGGKTR 192 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 I P+L +VR+A+ Y D PF L + PLFR RG PL+P Q ++ LR LGL Sbjct: 193 IAPVLDAVREAVAVYADELPFVLGPD--EPLFRAKRGGPLSPRHVQALVQTLRGRLGLSD 250 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 T H RH+FATHLL G DLR+IQ +LGH LSTTQ YT V++ ++ Y H Sbjct: 251 RVTPHAFRHAFATHLLGAGADLRTIQELLGHASLSTTQRYTQVDAAG----LLAAYQAAH 306 Query: 319 P 319 P Sbjct: 307 P 307 >gi|312112853|ref|YP_004010449.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100] gi|311217982|gb|ADP69350.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100] Length = 344 Score = 207 bits (528), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 123/304 (40%), Positives = 172/304 (56%), Gaps = 12/304 (3%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 WL L + TL++YE D+RQFL LA +T+ + L+ + R+F++ RR Sbjct: 47 GWLAYLRDAHRYADNTLEAYERDSRQFLAHLAGKDARPVTLARLNALTPHDFRSFLADRR 106 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 RSL R+LS ++S + L++ +IL + K LP+ + E +A +VD Sbjct: 107 DDGAQSRSLSRTLSALRSLFRTLERTGALQNRSILAVALPKLPPRLPKPVTEAKAKEVVD 166 Query: 140 NVLLH---TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGD 195 L ++H W ARN A+L LLYG GLRISEAL L ++ + + LRI+GKG Sbjct: 167 EAALDGELSAH--PWTGARNQAVLLLLYGSGLRISEALGLNRKDAPLGPRDVLRIRGKGG 224 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 + R+ P+LP + AI +Y + CP L Q PLF G++G LNP + Q + +LR L Sbjct: 225 RERLAPVLPVAQTAIADYIEQCPH--KLEPQGPLFVGVKGGRLNPRIVQLLLARLRTNLA 282 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 LP + T H LRHSFATHLLS G DLR IQ +LGH LSTTQ YT V+ D + + Y Sbjct: 283 LPATATPHALRHSFATHLLSRGADLRVIQELLGHASLSTTQGYTAVDR----DRLFQAYS 338 Query: 316 QTHP 319 + HP Sbjct: 339 KAHP 342 >gi|157826278|ref|YP_001493998.1| site-specific tyrosine recombinase XerC [Rickettsia akari str. Hartford] gi|166918897|sp|A8GQ15|XERC_RICAH RecName: Full=Tyrosine recombinase xerC gi|157800236|gb|ABV75490.1| site-specific tyrosine recombinase XerC [Rickettsia akari str. Hartford] Length = 305 Score = 207 bits (528), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 118/304 (38%), Positives = 176/304 (57%), Gaps = 19/304 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W + L ++R S T+ SY D + FL F+ +Y E +TI I+ IR++++KR Sbjct: 13 WQKYLVLQRNYSNYTVISYNNDLKNFLEFMNYYNSELVTINHIKNADIRLIRSWLAKRNY 72 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 S+ R LS +K+F ++L+K I ++++ KK+ LP+AL+E D+ Sbjct: 73 DNFTTSSIARGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSE-------DD 125 Query: 141 VLLHTSH-----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 V++ H KW++ RN ++L L+Y GLRISEALS+T + + + +RI GKG Sbjct: 126 VVVSLEHIEEYGNVKWVELRNKSLLVLIYASGLRISEALSITKLH-LQNLEFIRIIGKGS 184 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 K RI+P LP + I +Y ++ P+ L N P+FRG RGK L P VF R + +L+ + G Sbjct: 185 KERIIPWLPIAKNLITQYLEILPYKLGDN--EPIFRGKRGKKLQPQVFNRELIKLKHFYG 242 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 LP TAH+ RHSFA+HLL G +LRSIQ +LGH LSTTQ YT + K + +Y Sbjct: 243 LPQHLTAHSFRHSFASHLLERGAELRSIQELLGHKSLSTTQNYTKTSIKR----LEAVYT 298 Query: 316 QTHP 319 +P Sbjct: 299 TAYP 302 >gi|302381671|ref|YP_003817494.1| integrase [Brevundimonas subvibrioides ATCC 15264] gi|302192299|gb|ADK99870.1| integrase family protein [Brevundimonas subvibrioides ATCC 15264] Length = 314 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 126/301 (41%), Positives = 174/301 (57%), Gaps = 10/301 (3%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL++L ER LS TL++Y RQ+L FL + E + + ++ E+RA +++RR+ Sbjct: 20 WLEHLAHERRLSPRTLEAYGHIGRQYLAFLERHRGEAQRLPDLGTVTAAELRAHLAERRS 79 Query: 81 --QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + RSL ++LS I++F +L +R T + +R + +LPR ++ QA L+ Sbjct: 80 GDHPLNARSLSQTLSAIRTFHVFLDRRCDTPAPQLALVRGPRVKATLPRPVSADQARGLL 139 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L E W R++A+L LLYGCGLRISEALSLT + + TLRI GKG K R Sbjct: 140 AEPGLDPDVE-PWEALRDTAVLSLLYGCGLRISEALSLTRADAPLPE-TLRITGKGGKTR 197 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +VP+LP VR A+ PF L+ L FR RG L+ Q +++LR LGLP Sbjct: 198 LVPVLPVVRSAVDAALAAQPFPLSPPDAL--FRARRGGALSARHVQATVQRLRGRLGLPA 255 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 S T H LRHSFATHLL G DLRSIQ +LGH LSTTQ YT V++ + ++ Y H Sbjct: 256 SATPHALRHSFATHLLGAGADLRSIQELLGHASLSTTQKYTAVDAAH----LLGAYAAAH 311 Query: 319 P 319 P Sbjct: 312 P 312 >gi|298293261|ref|YP_003695200.1| integrase family protein [Starkeya novella DSM 506] gi|296929772|gb|ADH90581.1| integrase family protein [Starkeya novella DSM 506] Length = 328 Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 115/289 (39%), Positives = 162/289 (56%), Gaps = 8/289 (2%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + WL L ER LS T ++Y D FL LA + I + LS E+RA I+ R Sbjct: 29 KGWLARLGHERRLSPKTREAYARDMSIFLGLLARQIGRQPEIADLANLSPREVRAVIAAR 88 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + I R+ R L+ +SF +++++ + + +R + + +LPR L+ A + Sbjct: 89 RAEGIEARTQMRFLAAARSFGRHMEREGLGKVGALTAVRAPRIARTLPRPLSPADARAMA 148 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT----PQNIMDDQSTLRIQGKG 194 D W+ R++A++ LLYG GLRISEAL L P+ DQ + + GKG Sbjct: 149 DPATRAGEEREPWVLMRDAAVIALLYGSGLRISEALGLMRRDMPEPGRGDQ--IVVHGKG 206 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 K R+VP+L V + + Y CP++L + L FRG +G PL+P + Q + ++R L Sbjct: 207 GKTRMVPVLRQVAEMVDAYVCACPYELEPSSSL--FRGAKGGPLSPRIVQLAVERMRGGL 264 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 GLP S T H LRHSFATHLL GGDLRSIQ +LGH LSTTQIY V+S Sbjct: 265 GLPDSATPHALRHSFATHLLGRGGDLRSIQELLGHASLSTTQIYAAVDS 313 >gi|103485754|ref|YP_615315.1| phage integrase [Sphingopyxis alaskensis RB2256] gi|98975831|gb|ABF51982.1| phage integrase [Sphingopyxis alaskensis RB2256] Length = 297 Score = 206 bits (524), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 117/301 (38%), Positives = 181/301 (60%), Gaps = 13/301 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++W +L E+ S+ T ++Y +F FL+ + + + L+ ++RA+++ R Sbjct: 7 RDWDAHLAHEKRRSEHTRRAYIATAERFCAFLSLHRGGAVDAAMLTALTPNDLRAYLADR 66 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + +G+ S R LS +++FL+++ + +++ MR + LPR ++ +A+ L Sbjct: 67 RAEGLGNASAARELSALRAFLRFVGG----SNASVPQMRGPRVKKGLPRPVSPAEAMQLA 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 NV + W+ AR+ A+L LLYG GLRI EAL+LT M TLR+ GK +K R Sbjct: 123 QNV--EDNAREGWVGARDFALLLLLYGAGLRIGEALALT-GAAMPLGDTLRVTGKRNKTR 179 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 IVP+LP+V KA+ Y CP+ + + PLF G+RG PL+PGV + +R RR LGL Sbjct: 180 IVPILPAVAKAVARYVAACPWPIAR--ETPLFLGVRGGPLHPGVVRVSVRSARRALGLSD 237 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 TT H LRHSFATHLL+ G DLRS+Q +LGH L++TQIYT V++ + +++IY H Sbjct: 238 RTTPHALRHSFATHLLAGGADLRSLQELLGHASLASTQIYTAVDAAH----LLDIYRSAH 293 Query: 319 P 319 P Sbjct: 294 P 294 >gi|167644210|ref|YP_001681873.1| site-specific tyrosine recombinase XerC [Caulobacter sp. K31] gi|167346640|gb|ABZ69375.1| integrase family protein [Caulobacter sp. K31] Length = 306 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 126/301 (41%), Positives = 174/301 (57%), Gaps = 10/301 (3%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL++L ER S T+++Y + +L FL + E ++ + ++ E+RA+++ RR Sbjct: 12 WLEHLTHERRASPRTVRAYGDNVLAYLNFLERHRGEPQSVSDLGGITAAELRAYLAFRRE 71 Query: 81 QKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + G RSL +SLS I++F +YL R T + I +R + PR ++E QA L+ Sbjct: 72 GENGLSPRSLSQSLSSIRAFHRYLDHRLDTPNAAIGLVRGPRIKVGAPRPVSEDQAHGLI 131 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + L + E W AR+ A+L LL+GCGLRISE LSL ++ +S LRI GKG K R Sbjct: 132 AEISLDSDRE-DWEVARDEAVLTLLWGCGLRISEGLSLLRRDAPLAES-LRITGKGGKTR 189 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 IVP+L VR+ I Y PF L + PLFR RG PL+P Q ++ LR LGL Sbjct: 190 IVPVLDIVRERIDAYLAALPFALEPDD--PLFRAKRGGPLSPRHVQATMQHLRSRLGLSD 247 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 T H LRHSFATHLL G DLRSIQ +LGH LSTTQ YT V++ ++ Y + H Sbjct: 248 RATPHALRHSFATHLLGAGADLRSIQDLLGHASLSTTQRYTQVDAAG----LLAAYGKAH 303 Query: 319 P 319 P Sbjct: 304 P 304 >gi|87200080|ref|YP_497337.1| phage integrase [Novosphingobium aromaticivorans DSM 12444] gi|87135761|gb|ABD26503.1| phage integrase [Novosphingobium aromaticivorans DSM 12444] Length = 297 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 109/301 (36%), Positives = 171/301 (56%), Gaps = 13/301 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + W +L + R S T+++Y +FL L + ++ ++ +RA ++ R Sbjct: 8 EAWNAHLALGRRRSPHTVRAYAATAARFLRGLPGEQD----WSSLARIDAATLRAHLADR 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R +G+ S R LS +K+F+ + +++ +++ +R + LPR + +A+ L Sbjct: 64 RADGLGNVSAARELSALKTFIAFAREQAGHEDASRPRLRGPRVKRGLPRPITPDEAVNLA 123 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + V + WI AR+ A+L LLYG G+RI+EAL+L P + + + I GKG + R Sbjct: 124 ETVADDAA--VPWIAARDRAVLLLLYGAGMRIAEALAL-PASALPLGEAVTITGKGGRQR 180 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +VPLLP VR + +Y CP+ L + PLFRG +G PL G+ QR + + R LGLP Sbjct: 181 VVPLLPIVRAGVDDYVRQCPWPLEKDK--PLFRGAKGGPLAQGMVQRAVARARIALGLPA 238 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + T H LRHSFATHLL G DLRS+Q +LGH LS+TQIYT V++ ++++Y H Sbjct: 239 TATPHALRHSFATHLLGAGADLRSLQELLGHASLSSTQIYTRVDAAT----LLDVYRNAH 294 Query: 319 P 319 P Sbjct: 295 P 295 >gi|83313349|ref|YP_423613.1| site-specific tyrosine recombinase XerC [Magnetospirillum magneticum AMB-1] gi|82948190|dbj|BAE53054.1| Integrase [Magnetospirillum magneticum AMB-1] Length = 314 Score = 203 bits (516), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 120/307 (39%), Positives = 176/307 (57%), Gaps = 9/307 (2%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L + ++W Q L ER S TL Y D FL FL + + + + L + R Sbjct: 13 DLARAVESWWQWLGSERRASSHTLDGYGRDLAAFLTFLTEHLAAEPDLAALASLGAGDFR 72 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 AF+++R +G SL R +S ++ F K+L + + + +++ + S+P+ L Sbjct: 73 AFLARRTQDGLGRSSLARLMSTLRGFFKFLDRHDLVHNPALKAVKSPRPPKSVPKPLAPD 132 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 +AL + + H+ W+ AR+ A+ LLYG GLR+ EALSLT +++ T+ I G Sbjct: 133 EALEALSSA--GELHDEPWLAARDVALFTLLYGAGLRLGEALSLTRRDL-PKGDTMVITG 189 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 KG+K R+VP+LP VR AI +Y P+ P+F G RG PLNPGV QR +R+LR+ Sbjct: 190 KGNKQRVVPVLPVVRDAIADYLKRLPYPAEPTD--PIFLGARGGPLNPGVVQRQMRRLRQ 247 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 +GLP + T H LRHSFATHLL+ GGDLR+IQ +LGH LSTTQ YT V++ + Sbjct: 248 MMGLPETATPHALRHSFATHLLAGGGDLRTIQELLGHSSLSTTQRYTEVDAAR----LTR 303 Query: 313 IYDQTHP 319 +Y HP Sbjct: 304 VYRDAHP 310 >gi|209965542|ref|YP_002298457.1| tyrosine recombinase XerC, putative [Rhodospirillum centenum SW] gi|259710436|sp|B6IPE2|XERC_RHOCS RecName: Full=Tyrosine recombinase xerC gi|209959008|gb|ACI99644.1| tyrosine recombinase XerC, putative [Rhodospirillum centenum SW] Length = 341 Score = 202 bits (515), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 117/301 (38%), Positives = 167/301 (55%), Gaps = 8/301 (2%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + W + LE ERG S TL+SY D FL F+A + + + L RA+++ R Sbjct: 21 ERWGRWLEHERGASTHTLRSYRADLAGFLAFVAEHRGRPPGLNDLGALDLGAFRAWLAAR 80 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 G + R +SG++SF ++ + + I + K LPR L A L+ Sbjct: 81 AADGAGAATRSRGVSGVRSFFRWADRSGLLHNPAIALLTAPKAQRPLPRPLAADDAALLL 140 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + E WI R+ A+ LLYGCGLRISEA+ L ++ +++R+ GKG K R Sbjct: 141 EEAA--AVPEAPWIGLRDRALFTLLYGCGLRISEAIGLNRSDLPAGAASVRVLGKGGKQR 198 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VP+LP+VR+A+ Y P+ PLF G +G L+P V +R +R LR LGLP Sbjct: 199 DVPVLPAVREAVAAYLAAVPW--GGGRAAPLFVGAKGDRLSPDVARRQMRHLRALLGLPD 256 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 STT H LRHSFATHLL G DLR+IQ +LGH LSTTQ YT+V++++ ++ +Y+ H Sbjct: 257 STTPHALRHSFATHLLGGGADLRAIQDLLGHASLSTTQRYTDVDAEH----LLSVYETAH 312 Query: 319 P 319 P Sbjct: 313 P 313 >gi|148285154|ref|YP_001249244.1| site-specific tyrosine recombinase XerC [Orientia tsutsugamushi str. Boryong] gi|146740593|emb|CAM81243.1| tyrosine recombinase XerC [Orientia tsutsugamushi str. Boryong] Length = 312 Score = 202 bits (514), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 122/308 (39%), Positives = 187/308 (60%), Gaps = 11/308 (3%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-EKITIQTIRQLSYTEIRAFISKRR 79 WL +L+ + S T SY D +QFL F+ Y ++ + + +R+++S+R Sbjct: 14 WLNHLKNYKNYSINTCNSYNNDLQQFLNFIVDYCNLSELKTSHLCSVDIRLMRSWLSQRY 73 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + S R+LS +++F KYL K+ I +R+ K + LP+AL+ + + Sbjct: 74 NLQYNSSSNSRALSSVRNFYKYLFKQHNLVNKIISAVRSPKLAKRLPKALDIEDTVACTT 133 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + + KWI AR+ A+L+LLYG GLRISEALS+T ++ + +L I+GKG+KIR+ Sbjct: 134 EI--NNIANDKWIGARDKALLFLLYGQGLRISEALSVTKVSLKSE--SLIIKGKGNKIRL 189 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 +P L ++ + +Y +L P+ L N PLF G RGK L P VF R++ +LRR L LP S Sbjct: 190 IPWLDITKQLVSDYVNLVPYSLTENS--PLFVGKRGKKLQPAVFGRHLIKLRRQLNLPES 247 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T HT RH FA+HLL+NG DLRSIQ +LGH LS+TQIYT +NS D++ +Y+++HP Sbjct: 248 LTPHTFRHCFASHLLNNGADLRSIQELLGHQSLSSTQIYTKINS----DFLTSVYNKSHP 303 Query: 320 SITQKDKK 327 + +++ K Sbjct: 304 LVREQNNK 311 >gi|315497300|ref|YP_004086104.1| integrase family protein [Asticcacaulis excentricus CB 48] gi|315415312|gb|ADU11953.1| integrase family protein [Asticcacaulis excentricus CB 48] Length = 304 Score = 202 bits (514), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 124/304 (40%), Positives = 176/304 (57%), Gaps = 10/304 (3%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS- 76 R WLQ L+ ++ +S TL++Y ++ L I + + L+ +IR +++ Sbjct: 7 RLQWLQYLKAQKRVSPRTLEAYGHAFSLYIGHLRKALGADIDLNDLSHLTSADIRGWMAY 66 Query: 77 -KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 + + + + RSL + LS IKSF YL + ++ + + SLPR LNE QA Sbjct: 67 LRGKDEPLSARSLAQHLSAIKSFHSYLDLHMGYANAQVVLTQGPRLKTSLPRPLNEDQAQ 126 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L+ + L +++W AR+ A+L LLYGCGLRISEALSLT ++ + TLRI GKG+ Sbjct: 127 GLLTEIEL-DGDKSEWEAARDRAVLLLLYGCGLRISEALSLTAKDTPLAE-TLRIVGKGN 184 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 K R+VP+L +VR+A+ Y L PF L + LFR RG PL+P Q ++ LR LG Sbjct: 185 KTRLVPVLEAVREAVDTYRRLQPF--TLTEEDALFRAPRGGPLSPRHVQLSVQHLRSRLG 242 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 L T H LRHSFATHLL +G DLRSIQ +LGH LSTTQ YT V+++ ++ Y Sbjct: 243 LSDRATPHALRHSFATHLLGSGADLRSIQELLGHASLSTTQKYTQVDAER----LLSAYA 298 Query: 316 QTHP 319 HP Sbjct: 299 AAHP 302 >gi|85708628|ref|ZP_01039694.1| tyrosine recombinase [Erythrobacter sp. NAP1] gi|85690162|gb|EAQ30165.1| tyrosine recombinase [Erythrobacter sp. NAP1] Length = 265 Score = 199 bits (507), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 101/261 (38%), Positives = 155/261 (59%), Gaps = 9/261 (3%) Query: 59 TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118 T + + ++R+ ++ RR Q + + S R LS +K+ + Y + + + + Sbjct: 9 TWHDVAAVEAHDLRSHLASRRAQGLSNSSAARELSALKALIAYARSEAGDPDPSAPRLCG 68 Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178 + LPR + +A+ + D L+ + WI AR+ A+L L+YG GLRI+EALSL Sbjct: 69 PRLKKGLPRPVTPDEAVNIAD--LIDGTASEDWIGARDRAVLLLMYGSGLRIAEALSLEG 126 Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238 ++ + + TL++ GKG K R+VP+LP R+A+ EY + CP+ L PLFRG +G PL Sbjct: 127 RDAVLGE-TLQVTGKGGKQRLVPILPITREAVAEYANACPW--PLPTHEPLFRGAKGGPL 183 Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + G+ Q+ + + RR LGLP + T H LRHSFATHLL G DLRS+Q +LGH L +TQIY Sbjct: 184 SAGMVQKAMARARRALGLPDTATPHALRHSFATHLLGAGADLRSLQELLGHASLGSTQIY 243 Query: 299 TNVNSKNGGDWMMEIYDQTHP 319 T V++ + ++E Y HP Sbjct: 244 TKVDAAS----LLETYRGAHP 260 >gi|332187766|ref|ZP_08389500.1| phage integrase, N-terminal SAM-like domain protein [Sphingomonas sp. S17] gi|332012116|gb|EGI54187.1| phage integrase, N-terminal SAM-like domain protein [Sphingomonas sp. S17] Length = 292 Score = 199 bits (507), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 111/300 (37%), Positives = 170/300 (56%), Gaps = 16/300 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++ ++L ++ S T+++Y + FL + ++ + +++ T++RA+++ RR Sbjct: 7 DYYRHLTVDLRRSDHTVRAYVATAERLTGFLTRHWGSEVDAGALSRITATDLRAYLAFRR 66 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + + S R LS +++FL++ ++ ++ S+PR + L + Sbjct: 67 GEGLTAASTARELSAVRTFLQFAGIEPPA-------LKGPRRKRSMPRPQAPADIIALAE 119 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 +V + WI AR+ A+L LLYG GLRI EAL+L P I+ TLR+ GK DK RI Sbjct: 120 DVAEDAAE--PWIAARDWAVLLLLYGAGLRIGEALAL-PAAILPLGETLRVLGKRDKTRI 176 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 VPLLP VR+AI Y PF + + PLFRG +G PL+P + +R +R R LGL Sbjct: 177 VPLLPQVREAIERYAAQMPF--AVEGREPLFRGAKGGPLSPAIIRRSVRGARERLGLGAR 234 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 TT H LRHSFATHLL G DLR +Q +LGH LS+TQIYT V++ +++IY HP Sbjct: 235 TTPHALRHSFATHLLGRGADLRQLQELLGHASLSSTQIYTAVDAAR----LLDIYRTAHP 290 >gi|85374026|ref|YP_458088.1| tyrosine recombinase XerC [Erythrobacter litoralis HTCC2594] gi|84787109|gb|ABC63291.1| tyrosine recombinase XerC [Erythrobacter litoralis HTCC2594] Length = 264 Score = 199 bits (507), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 101/249 (40%), Positives = 148/249 (59%), Gaps = 9/249 (3%) Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 +R ++ RR + + + S R LS +K+F+ Y + E+ +R + LPR + Sbjct: 21 LRRHLAARRAEGLANTSAARELSALKAFIAYARSETGDAEATAPRLRGPRIKKGLPRPVT 80 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 +A+ L D V S WI R+ A+L LLYG GLRI+EALSLT + + +S L++ Sbjct: 81 PDEAINLADTV--DASAADDWIGKRDRAVLLLLYGAGLRIAEALSLTGKAVPLGES-LQV 137 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 GKG K R+VP+LP + A+ +Y CP+ + + PLFRG +G PL+ G+ Q+ + Sbjct: 138 TGKGGKQRVVPILPLIGDAVADYAKTCPW--PIEPKGPLFRGAKGGPLSQGMIQKTTARA 195 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 RR LGLP + T H LRHSFATHLL G DLRS+Q +LGH L +TQIYT V++ + Sbjct: 196 RRALGLPDTATPHALRHSFATHLLGAGADLRSLQELLGHASLGSTQIYTKVDAAT----L 251 Query: 311 MEIYDQTHP 319 ++ Y + HP Sbjct: 252 LDTYRKAHP 260 >gi|23014819|ref|ZP_00054617.1| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1] Length = 314 Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 120/307 (39%), Positives = 175/307 (57%), Gaps = 9/307 (2%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L + ++W Q L E+ S TL Y D FL FL + + + + L + R Sbjct: 13 DLARAVESWRQWLGSEKRASAHTLDGYGRDLAAFLTFLTEHLAAEPDLAALAALGPGDFR 72 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 AF+++R +G SL R +S ++ F K+L + + I +++ + S+P+ L Sbjct: 73 AFLARRTQDGLGRSSLARLMSTLRGFFKFLDRHGLVHNPAIKAVKSPRPPKSIPKPLAPD 132 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 +AL + + H+ W+ AR+ A+ LLYG GLR+ EALSL ++ + T+ I G Sbjct: 133 EALEALSSA--GELHDEPWLAARDVALFSLLYGAGLRLGEALSLLRRD-LPKGDTMVITG 189 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 KG+K R+VP+LP VR AI +Y PF P+F G RG PLNPGV QR +R+LR+ Sbjct: 190 KGNKQRVVPVLPVVRDAIADYLKRLPFPSESTD--PVFLGARGGPLNPGVVQRQMRRLRQ 247 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 +GLP + T H LRHSFATHLL+ GGDLR+IQ +LGH LSTTQ YT V++ + Sbjct: 248 VMGLPDTATPHALRHSFATHLLAGGGDLRTIQELLGHSSLSTTQRYTEVDAAR----LTR 303 Query: 313 IYDQTHP 319 +Y HP Sbjct: 304 VYRDAHP 310 >gi|56552810|ref|YP_163649.1| site-specific tyrosine recombinase XerC [Zymomonas mobilis subsp. mobilis ZM4] gi|56544384|gb|AAV90538.1| integrase family protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 307 Score = 199 bits (506), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 116/300 (38%), Positives = 177/300 (59%), Gaps = 15/300 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 W Q L+ S ++++Y +F+ FL + + I T+++ EIRAF++ RR Sbjct: 19 QWEQYLQFSLRRSPHSIRAYMATVHRFISFLGNHRGDLIDKNTLQKTDIAEIRAFLAYRR 78 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + + S+ R +SGI++FL+++ I ++ + +PR L+ + A+ L Sbjct: 79 QSGLANSSVAREISGIRAFLRFIGLDPIPA------IKGARVKKGIPRPLSPEDAVALAK 132 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 S + WI+AR+ A+L LLYG GLRISEAL+LT + I+ Q+TLR+ GK KIRI Sbjct: 133 EASEEASEQ--WIEARDLALLLLLYGSGLRISEALNLTCE-ILPLQTTLRVVGKRSKIRI 189 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 VPLL V++A+ Y LCP+ + + P FRG +G L+ V +R +R+ R +LGL Sbjct: 190 VPLLEKVKRAMETYVRLCPYAFSGS--QPFFRGAKGGVLSADVLRRTVRKARYHLGLDNK 247 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T H LRHSFA+HLL G DLRS+Q +LGH LS+TQIYT V++ ++++Y HP Sbjct: 248 ATPHALRHSFASHLLGRGADLRSLQELLGHASLSSTQIYTAVDAAR----LLDVYRAAHP 303 >gi|241762668|ref|ZP_04760738.1| integrase family protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241372739|gb|EER62461.1| integrase family protein [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 307 Score = 198 bits (504), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 116/300 (38%), Positives = 176/300 (58%), Gaps = 15/300 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 W Q L+ S +++Y +F+ FL + + I T+++ EIRAF++ RR Sbjct: 19 QWEQYLQFSLRRSPHGIRAYMATVHRFISFLGNHRGDLIDKNTLQKTDIAEIRAFLAYRR 78 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + + S+ R +SGI++FL+++ I ++ + +PR L+ + A+ L Sbjct: 79 QSGLANSSVAREISGIRAFLRFIGLDPIPA------IKGARVKKGIPRPLSPEDAVALAK 132 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 S + WI+AR+ A+L LLYG GLRISEAL+LT + I+ Q+TLR+ GK KIRI Sbjct: 133 EASEEASEQ--WIEARDLALLLLLYGSGLRISEALNLTCE-ILPLQTTLRVVGKRSKIRI 189 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 VPLL V++A+ Y LCP+ + + P FRG +G L+ V +R +R+ R +LGL Sbjct: 190 VPLLEKVKRAMETYVRLCPYAFSGS--QPFFRGAKGGVLSADVLRRTVRKARYHLGLDNK 247 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T H LRHSFA+HLL G DLRS+Q +LGH LS+TQIYT V++ ++++Y HP Sbjct: 248 ATPHALRHSFASHLLGRGADLRSLQELLGHASLSSTQIYTAVDAAR----LLDVYRAAHP 303 >gi|260753463|ref|YP_003226356.1| site-specific tyrosine recombinase XerC [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552826|gb|ACV75772.1| integrase family protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 307 Score = 198 bits (504), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 115/300 (38%), Positives = 177/300 (59%), Gaps = 15/300 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 W Q L+ S ++++Y +F+ FL + + I T+++ EIRAF++ RR Sbjct: 19 QWEQYLQFSLRRSPHSIRAYMATVHRFISFLGNHRGDLIDKNTLQKTDIAEIRAFLAYRR 78 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + + S+ R +SGI++FL+++ I ++ + +PR L+ + A+ L Sbjct: 79 QSGLANSSVAREISGIRAFLRFIGLDPIPA------IKGARVKKGIPRPLSPEDAVALAK 132 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 S + WI+AR+ A+L LLYG GLRISEAL+LT + I+ Q+TLR+ GK KIRI Sbjct: 133 EASEEASEQ--WIEARDLALLLLLYGSGLRISEALNLTCE-ILPLQTTLRVVGKRSKIRI 189 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 VPLL V++A+ Y LCP+ + + P FRG +G L+ V +R +R+ R +LG+ Sbjct: 190 VPLLEKVKRAMETYVRLCPYAFSGS--QPFFRGAKGGVLSADVLRRTVRKARYHLGVDNK 247 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T H LRHSFA+HLL G DLRS+Q +LGH LS+TQIYT V++ ++++Y HP Sbjct: 248 ATPHALRHSFASHLLGRGADLRSLQELLGHASLSSTQIYTAVDAAR----LLDVYRAAHP 303 >gi|288959341|ref|YP_003449682.1| integrase/recombinase [Azospirillum sp. B510] gi|288911649|dbj|BAI73138.1| integrase/recombinase [Azospirillum sp. B510] Length = 321 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 114/302 (37%), Positives = 169/302 (55%), Gaps = 12/302 (3%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKR 78 +W + LE E+ +S+ TL +Y D +FL FL F+ ++ + L + RA++S+ Sbjct: 25 HWRRWLESEKVVSRHTLSAYTADVAEFLRFLTEFHGGSPPSLNDLGDLKAADFRAWMSRL 84 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S R L+ +++ +++ + + + K PR L E A L+ Sbjct: 85 AMDGLVGASRARKLAAVRNLFRWMDRGGRLHNPAVATLATPKVKRPAPRPLTEIDADRLL 144 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKI 197 E WI R+ A+ LLYGCGLRISEAL L ++ + D TLR+ GKG K Sbjct: 145 --EEAEREREEPWIGKRDRALFTLLYGCGLRISEALGLAARDAPLGD--TLRVTGKGRKD 200 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 R++P+LP+V +A+ Y D CPF L PLF G RG LN + Q +++LR +G+P Sbjct: 201 RMIPILPAVTEAVRAYLDSCPF--TLAPDGPLFVGTRGGRLNASIAQHQMQKLRALMGMP 258 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + T H LRHSFATHLL++GGDLR+IQ +LGH LSTTQ YT+V ++ +M +Y Sbjct: 259 DNATPHALRHSFATHLLADGGDLRAIQDLLGHASLSTTQRYTDVENEQ----LMNVYRNA 314 Query: 318 HP 319 HP Sbjct: 315 HP 316 >gi|189184773|ref|YP_001938558.1| site-specific tyrosine recombinase XerC [Orientia tsutsugamushi str. Ikeda] gi|189181544|dbj|BAG41324.1| integrase/recombinase XerC [Orientia tsutsugamushi str. Ikeda] Length = 312 Score = 197 bits (500), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 124/308 (40%), Positives = 186/308 (60%), Gaps = 11/308 (3%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-EKITIQTIRQLSYTEIRAFISKRR 79 WL L+ + S T SY D +QFL F+ Y ++ I + + +R+++S+R Sbjct: 14 WLNYLKNYKNYSINTCSSYNNDLQQFLNFIVDYCNLSELKISHLCSVDIRLMRSWLSQRY 73 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + S R+LS +++F KYL K I +R+ K + LP+AL+ + + Sbjct: 74 NLQYNSSSNSRALSSVRNFYKYLFKHHNLVNKIICAVRSPKLAKRLPKALDIQDTVACTT 133 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + + KWI AR+ A+L LLYG GLRISEALS+T ++ + +L I+GKG+KIR+ Sbjct: 134 EI--NNIANDKWIGARDKALLLLLYGQGLRISEALSVTKASLKSE--SLIIKGKGNKIRL 189 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 +P L ++ + +Y +L P+ L N PLF G RGK L P VF R++ +LRR L LP S Sbjct: 190 IPWLDITKQLLSDYVNLVPYSLTDNS--PLFVGKRGKKLQPAVFGRHLIKLRRQLNLPES 247 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 TAHT RH FA+HLL+NG DLRSIQ +LGH LS+TQIYT +NS D++ +Y+++HP Sbjct: 248 LTAHTFRHCFASHLLNNGADLRSIQELLGHQSLSSTQIYTKINS----DFLTSVYNKSHP 303 Query: 320 SITQKDKK 327 + +++ K Sbjct: 304 LVREQNNK 311 >gi|73667280|ref|YP_303296.1| Phage integrase, N-terminal SAM- like [Ehrlichia canis str. Jake] gi|72394421|gb|AAZ68698.1| Phage integrase, N-terminal SAM- like protein [Ehrlichia canis str. Jake] Length = 310 Score = 197 bits (500), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 112/306 (36%), Positives = 175/306 (57%), Gaps = 12/306 (3%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W+ LE ER S T+ +Y D +FL FL Y +T++ + + ++R + + R Sbjct: 13 WVSWLEKERRYSVNTVDAYVRDVNKFLGFLYTYVLRPVTLEDVVNIKVADLRKWFTFRYQ 72 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + RSLS +K+F +YL + +I + K ++LP+ L + ++N Sbjct: 73 ANVEAITNARSLSALKNFFRYLSRTYDVDNQSIFCLSRPKLKSALPKTLGQFH----IEN 128 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 ++ + S W+ R+ AI+ LLYGCGLRISEA+ L Q++ + + I GKG+K RI+ Sbjct: 129 IVNYYSLHDNWVFKRDFAIIMLLYGCGLRISEAVGLKFQDVRTGE--ILITGKGNKERIL 186 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 P+LP VR ++ EY CP+ LN +F G+ GK L F I+++ +GLP Sbjct: 187 PILPVVRNSLDEYIKFCPYHTKLNSVGNEYIFVGVNGKKLGRTYFANRIQKICEKIGLPD 246 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 +TT H RHSFATHLL +G D+RSIQ +LGH LSTTQIYT+++ K+ +++ Y H Sbjct: 247 TTTPHVFRHSFATHLLLSGADIRSIQELLGHANLSTTQIYTHLDHKS----IIDHYKNFH 302 Query: 319 PSITQK 324 P + +K Sbjct: 303 PQVIKK 308 >gi|149184521|ref|ZP_01862839.1| phage integrase [Erythrobacter sp. SD-21] gi|148831841|gb|EDL50274.1| phage integrase [Erythrobacter sp. SD-21] Length = 299 Score = 195 bits (496), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 108/288 (37%), Positives = 165/288 (57%), Gaps = 14/288 (4%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 S T+++Y + L L + ++I +LS ++R ++ RR+ + + S R Sbjct: 21 SPHTVRAYHKAAERLLSRLHLHEFDQIA-----ELSAGKLRTHLASRRSDGLSNASAARE 75 Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 LS +KSF+ + + + +++ MR + LPR + A+ L + + W Sbjct: 76 LSALKSFIGFARAQAGHEQTDAPRMRGPRLKKGLPRPVTPDDAIGLAETI--EELAVDGW 133 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211 + AR+ A+L LLYG G+RISEALSL ++ + TL + GKG+K R+VPLLP VR ++ Sbjct: 134 VGARDRAVLLLLYGAGMRISEALSLKGGDLPLGE-TLTVTGKGNKQRVVPLLPLVRDSVA 192 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 Y CP+ L + PLFRG++G L+ GV Q+ + RR LGLP + T H LRHSFAT Sbjct: 193 TYVKQCPW--PLGPKDPLFRGVKGGVLSQGVVQKATARARRALGLPDTATPHALRHSFAT 250 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HLL G DLRS+Q +LGH L +TQIYT V++ + +++ Y HP Sbjct: 251 HLLGAGADLRSLQELLGHASLGSTQIYTKVDAAS----LLDTYRNAHP 294 >gi|326387918|ref|ZP_08209524.1| phage integrase [Novosphingobium nitrogenifigens DSM 19370] gi|326207964|gb|EGD58775.1| phage integrase [Novosphingobium nitrogenifigens DSM 19370] Length = 298 Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 119/317 (37%), Positives = 172/317 (54%), Gaps = 24/317 (7%) Query: 5 NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64 LPEI+S W +L R S T+++Y R+ + L E+ + R Sbjct: 2 TLPEILS--------AWHDHLAHGRRRSPHTVRAYVATARRLITRL----EQDGALHWAR 49 Query: 65 --QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122 L T +R +++ RR IG+ S R LS +K+F+ + + + +R + Sbjct: 50 LGALDATALRHYLADRREHGIGNVSAARELSALKAFIAFART-QADMPPGAPRLRGPRVK 108 Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 LPR + A+ L + V + WI AR++A+L LLYG GLRI EAL+L P I+ Sbjct: 109 KGLPRPITPDDAVNLAETVAEDATE--PWIAARDTAVLLLLYGSGLRIGEALAL-PAGIL 165 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242 ++ I GKG + R+V LLP VR A+ Y L P+ L + PLFRG +G PL+ G+ Sbjct: 166 PAGESMVITGKGGRQRLVALLPVVRAALERYAALVPWPLGKDD--PLFRGAKGGPLSAGM 223 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 +R + + R LGLP S T H LRHSFATHLL G DLRS+Q +LGH LS+TQIYT V+ Sbjct: 224 IRRAMARARVALGLPPSATPHALRHSFATHLLGAGADLRSLQELLGHASLSSTQIYTKVD 283 Query: 303 SKNGGDWMMEIYDQTHP 319 + ++++Y HP Sbjct: 284 AAR----LLDVYRSAHP 296 >gi|294085404|ref|YP_003552164.1| phage integrase family protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292664979|gb|ADE40080.1| phage integrase family protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 299 Score = 192 bits (487), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 113/304 (37%), Positives = 173/304 (56%), Gaps = 16/304 (5%) Query: 17 ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 R WL L E+ + T+ +YE D + +LA +K+T R T R +I+ Sbjct: 6 HRAAWLAWLAEEKRYGRNTIDAYETDLDDYTSYLA-TQPDKLTSSPNR----TVFRGWIA 60 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + + ++ R +S ++SFL++ ++ + ++ +R + ++P++L+ A Sbjct: 61 SMSGRDLARTTIARRVSALRSFLRFASRQNLLDVPDLSWLRAPRPPRTVPKSLSVDDAQA 120 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGD 195 L+ + + WI AR+ A+L LLYG GLRISEALSL Q+ + D L I GKG+ Sbjct: 121 LLAAIFARRGDD--WIKARDFAVLMLLYGAGLRISEALSLRRQDAPLGDW--LSIMGKGN 176 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 K+R VP+L + +A+ EY DLCP L L+ PLF RG L QR + LR L Sbjct: 177 KMRDVPVLRAAAQAVDEYIDLCP--LALDSDKPLFVSSRGGALGARAVQRLVESLRVELD 234 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 LP T H LRH+FATHLL NGGDLR+IQ +LGH L+TTQ+YT+V+ + +++++ Sbjct: 235 LPAHVTPHALRHAFATHLLGNGGDLRAIQQLLGHVSLATTQLYTHVDEAH----LVKVHQ 290 Query: 316 QTHP 319 +THP Sbjct: 291 ETHP 294 >gi|269958529|ref|YP_003328316.1| site-specific tyrosine recombinase [Anaplasma centrale str. Israel] gi|269848358|gb|ACZ49002.1| site-specific tyrosine recombinase [Anaplasma centrale str. Israel] Length = 312 Score = 192 bits (487), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 116/317 (36%), Positives = 178/317 (56%), Gaps = 20/317 (6%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIR 72 LL +WL L +ER S T+ +YE D F F+ E++ ++ I++L E+R Sbjct: 6 LLSAINDWLCWLRVERKCSPNTVAAYERDIMDFYKFICGEPCERVAGLKDIQELRSAELR 65 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 ++++ R Q S R+++ ++SF +YL ++ S + N+ SLP+ L E Sbjct: 66 SWLADRFKQGKQSSSNARAVAVVRSFFRYLHRKCGMNGSVVSNISRPIVRKSLPKVLEES 125 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 Q ++ W R+ A+ LLYGCGLRISEA+++ ++ Q LR+ G Sbjct: 126 QIRKVMGE-----REAPHWTHTRDLAVSALLYGCGLRISEAVNVKFCDL--GQDGLRVLG 178 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYI 247 KG K R++P+LP VR+AI EY CP +L + +F G+RG L+ F + Sbjct: 179 KGSKERVIPVLPWVRRAIDEYVANCP---HLRVHSASGTEYIFVGLRGGRLSRTYFAHRM 235 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 R+LRR +GLP +TT HTLRHSFATHL G D+R +Q +LGH L+TTQIYT+++ + Sbjct: 236 RKLRRRVGLPETTTPHTLRHSFATHLFLEGADIRVVQELLGHASLATTQIYTHLDYNS-- 293 Query: 308 DWMMEIYDQTHPSITQK 324 ++E Y + HP T+K Sbjct: 294 --VIENYREFHPQTTKK 308 >gi|88607829|ref|YP_504822.1| tyrosine recombinase XerC [Anaplasma phagocytophilum HZ] gi|88598892|gb|ABD44362.1| tyrosine recombinase XerC [Anaplasma phagocytophilum HZ] Length = 319 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 118/309 (38%), Positives = 172/309 (55%), Gaps = 17/309 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK--ITIQTIRQLSYTEIRAFISKR 78 W++ LE E+ SK T+ +Y D R FL + +EK + I + L TE R +I+ R Sbjct: 21 WVKCLEEEKRYSKHTVAAYLRDIRDFLQVVYGLRQEKSVVLITEMENLPMTEFRRWITIR 80 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q S R++S I++F +YL++ + ++ N LP+ L + L +V Sbjct: 81 CNQGKQSVSNLRAISAIRNFFRYLQRNHGIKNDVVFHIVNPIVRKGLPKVLEKSHVLKMV 140 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 S W R++AI+ LLYGCGLRISEA+ L ++ D +R+ GKG K R Sbjct: 141 -------SENIHWTSRRDAAIVALLYGCGLRISEAVGLRFGDLEAD--AVRVLGKGKKER 191 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 I+P+LP V+K + Y + CPF N +F G+RGK L+ F ++ LRR +GL Sbjct: 192 IIPILPWVQKLLDGYVESCPFHGTGCGNKASYVFLGVRGKVLDRTYFAHRMQALRRNMGL 251 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 P STT H LRHSFATHL G D+R IQ +LGH LSTTQIYT+++ K+ +++ Y Sbjct: 252 PESTTPHALRHSFATHLFLEGADIRVIQELLGHENLSTTQIYTHLDHKS----IIDNYMG 307 Query: 317 THPSITQKD 325 HP +K+ Sbjct: 308 FHPQTVKKN 316 >gi|162148139|ref|YP_001602600.1| site-specific tyrosine recombinase XerC [Gluconacetobacter diazotrophicus PAl 5] gi|161786716|emb|CAP56299.1| Tyrosine recombinase xerC [Gluconacetobacter diazotrophicus PAl 5] Length = 324 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 114/318 (35%), Positives = 170/318 (53%), Gaps = 30/318 (9%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +W+++ ER S LT+ +Y D +FL F+ + + + + +LS ++RA+++ Sbjct: 12 DWMRD---ERRASPLTIAAYRGDLDRFLDFIGAHVGGTVDLAVLDRLSLADLRAWLAFEH 68 Query: 80 TQ--KIGDRSLKRS-------------LSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 Q + R RS +S ++SF +YL +R T + + + Sbjct: 69 AQGHALAQRDRGRSSTPDRAARTRARRVSAMRSFYRYLARRHGVTNPAPGLLAAPRTKSP 128 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--- 181 LPR L+E QAL + D V T AR++A+ LLYGCGLRISEAL L +++ Sbjct: 129 LPRPLSEAQALDVPDGV--GDLAVTPLGQARDAALFLLLYGCGLRISEALGLDVRDLDHA 186 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241 + TL ++GKG + R+VP+LP+V + + ++ P L PLF G+RG L P Sbjct: 187 LSAGGTLLVRGKGGRERLVPILPAVARVLTDWRARHPAPLP---DAPLFPGVRGGRLQPA 243 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 V QR +R R GLP T H LRHSFATHL+ G DLR+IQ +LGH LSTTQ YT Sbjct: 244 VAQRAMRAWRDMAGLPDHATPHALRHSFATHLMEGGADLRTIQELLGHASLSTTQRYTLA 303 Query: 302 NSKNGGDWMMEIYDQTHP 319 + +ME++ + HP Sbjct: 304 DEAR----LMEVWTRAHP 317 >gi|329114535|ref|ZP_08243294.1| Tyrosine recombinase XerC [Acetobacter pomorum DM001] gi|326696015|gb|EGE47697.1| Tyrosine recombinase XerC [Acetobacter pomorum DM001] Length = 315 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 112/316 (35%), Positives = 174/316 (55%), Gaps = 26/316 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS-- 76 Q +L+ + +E+ S LT+++Y+ D +FL F+ + + + + +S + RA+++ Sbjct: 8 QKFLEWMAVEKQASPLTIEAYQGDLARFLGFMTTHLDGLPDMVGLGLISLRDFRAWLAYE 67 Query: 77 ---------KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127 ++ + R+ R +S ++SF KYL +R+ I + + LPR Sbjct: 68 QAEASKPTARKTSSDQATRTRARRVSAVRSFFKYLARRQGVENPAIQLLSTPRTKKPLPR 127 Query: 128 ALNEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSL--TPQNIMD 183 L + QAL +++ L HT E + R++A+ LLYGCGLRISEAL+L ++M Sbjct: 128 PLAKDQALAAPEDISDLAHTPMEQQ----RDAALFLLLYGCGLRISEALNLNIADLDVMR 183 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 + LRI GKG K R+VP+LP V++A+ + P PLF GIRGK L P + Sbjct: 184 SSNVLRILGKGGKERLVPVLPVVQQALEAWRGRHPAP---TPDAPLFVGIRGKRLQPAIA 240 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 Q+ +R+ R GLP T H LRHSFATHL+ G DLR IQ +LGH LSTTQ YT + Sbjct: 241 QKAMREWRHLSGLPDYVTPHALRHSFATHLMEGGADLRVIQELLGHASLSTTQRYTLADE 300 Query: 304 KNGGDWMMEIYDQTHP 319 +++++ + HP Sbjct: 301 AR----LLDVWTRAHP 312 >gi|68171192|ref|ZP_00544598.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia chaffeensis str. Sapulpa] gi|88658398|ref|YP_507161.1| phage integrase family site specific recombinase [Ehrlichia chaffeensis str. Arkansas] gi|67999386|gb|EAM86029.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia chaffeensis str. Sapulpa] gi|88599855|gb|ABD45324.1| site-specific recombinase, phage integrase family [Ehrlichia chaffeensis str. Arkansas] Length = 311 Score = 189 bits (479), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 112/307 (36%), Positives = 173/307 (56%), Gaps = 11/307 (3%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W+ ++ ER + T+ SY D +F+ FL +T++ I + ++R + + R Sbjct: 13 WVSWIKKERRYATNTVDSYLRDVNKFIEFLYMCVLRPVTLEDIIGVKVADLRKWFAFRYQ 72 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 I + RSLS +K+F +YL + + + K ++LPR L + ++D Sbjct: 73 ANIEAVTNARSLSALKNFFRYLSRTYNIDGQAVFCLSRPKLKSTLPRTLTQSHIQKIIDY 132 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 L +T WI R+ A++ LLYGCGLRISEA++L QNI ++ L I GK K RI+ Sbjct: 133 YALL---DTDWIVKRDFALIVLLYGCGLRISEAVNLKFQNIRREE--LLIIGKRSKERIL 187 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 P+LP VR+++ EY CP+ + LN +F G+RGK L F I+++ + +GLP Sbjct: 188 PILPIVRQSLDEYVRCCPYHMELNSVKNEYVFVGVRGKKLKRTYFANRIQKICKEIGLPD 247 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 T H RHSFATHL G D+RSIQ +LGH LSTTQIYT+++ K+ +++ Y H Sbjct: 248 VITPHAFRHSFATHLFLGGADIRSIQELLGHANLSTTQIYTHLDHKS----VIDHYKNFH 303 Query: 319 PSITQKD 325 P + +K+ Sbjct: 304 PQVIKKN 310 >gi|258542904|ref|YP_003188337.1| site-specific tyrosine recombinase XerC [Acetobacter pasteurianus IFO 3283-01] gi|256633982|dbj|BAH99957.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO 3283-01] gi|256637042|dbj|BAI03011.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO 3283-03] gi|256640094|dbj|BAI06056.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO 3283-07] gi|256643151|dbj|BAI09106.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO 3283-22] gi|256646206|dbj|BAI12154.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO 3283-26] gi|256649258|dbj|BAI15199.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO 3283-32] gi|256652245|dbj|BAI18179.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655302|dbj|BAI21229.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO 3283-12] Length = 315 Score = 188 bits (478), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 111/316 (35%), Positives = 174/316 (55%), Gaps = 26/316 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS-- 76 Q +L+ + +E+ S LT+++Y+ D +FL F+ + + + + +S + RA+++ Sbjct: 8 QKFLEWMAVEKQASPLTIEAYQGDLARFLGFMTTHLDGLPDMIGLGLISLRDFRAWLAYE 67 Query: 77 ---------KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127 ++ + R+ R +S ++SF KYL +R+ I + + LPR Sbjct: 68 QAEASKPTARKTSSDQATRTRARRVSAVRSFFKYLARRQGVENPAIQLLSTPRTKKPLPR 127 Query: 128 ALNEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSL--TPQNIMD 183 L + QAL +++ L HT E + R++A+ LLYGCGLRISEAL+L ++M Sbjct: 128 PLAKDQALAAPEDISDLAHTPMEQQ----RDAALFLLLYGCGLRISEALNLNIADLDVMR 183 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 + LRI GKG K R+VP+LP V++A+ + P PLF G+RGK L P + Sbjct: 184 SSNVLRILGKGGKERLVPVLPVVQQALEAWRTRHPAP---TPDAPLFVGVRGKRLQPAIA 240 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 Q+ +R+ R GLP T H LRHSFATHL+ G DLR IQ +LGH LSTTQ YT + Sbjct: 241 QKAMREWRHLSGLPDYVTPHALRHSFATHLMEGGADLRVIQELLGHASLSTTQRYTLADE 300 Query: 304 KNGGDWMMEIYDQTHP 319 +++++ + HP Sbjct: 301 AR----LLDVWTRAHP 312 >gi|209542780|ref|YP_002275009.1| site-specific tyrosine recombinase XerC [Gluconacetobacter diazotrophicus PAl 5] gi|209530457|gb|ACI50394.1| integrase family protein [Gluconacetobacter diazotrophicus PAl 5] Length = 324 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 113/318 (35%), Positives = 169/318 (53%), Gaps = 30/318 (9%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +W+++ ER S LT+ +Y D +FL F+ + + + + +LS ++RA+++ Sbjct: 12 DWMRD---ERRASPLTIAAYRGDLDRFLDFIGAHVGGTVDLAVLDRLSLADLRAWLAFEH 68 Query: 80 TQ--KIGDRSLKRS-------------LSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 Q + R RS +S ++SF +YL +R T + + + Sbjct: 69 AQGHALAQRDRGRSSTPDRAARTRARRVSAMRSFYRYLARRHGVTNPAPGLLAAPRTKSP 128 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--- 181 LPR L+E QAL + D V T AR++A+ LLYGCGLRISEAL L +++ Sbjct: 129 LPRPLSEAQALDVPDGV--GDLAVTPLGQARDAALFLLLYGCGLRISEALGLDVRDLDHA 186 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241 + TL ++GKG + R+VP+LP+V + + ++ P L PLF G+RG L P Sbjct: 187 LSAGGTLLVRGKGGRERLVPILPAVARVLTDWRARHPAPLP---DAPLFPGVRGGRLQPA 243 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 V QR +R R GLP T H LRHSFATHL+ G DLR+IQ +LGH LSTTQ YT Sbjct: 244 VAQRAMRAWRDMAGLPDHATPHALRHSFATHLMEGGADLRTIQELLGHASLSTTQRYTLA 303 Query: 302 NSKNGGDWMMEIYDQTHP 319 + + E++ + HP Sbjct: 304 DEAR----LTEVWTRAHP 317 >gi|58039205|ref|YP_191169.1| site-specific tyrosine recombinase XerC [Gluconobacter oxydans 621H] gi|58001619|gb|AAW60513.1| Site-specific recombinase, integrase/recombinase RipX, XerC [Gluconobacter oxydans 621H] Length = 321 Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 113/318 (35%), Positives = 171/318 (53%), Gaps = 21/318 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK- 77 ++W + L ER S T+++Y D L F + ++T+ + +LS ++RA+++ Sbjct: 12 RDWTEWLTHERRASPRTVEAYRHDVLLALTFFQQHLGAEVTLADLGKLSLADLRAWLAHE 71 Query: 78 --------RRTQKIGDRSLKRS--LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127 RR R+ R+ +S ++SF +YL R + + + LPR Sbjct: 72 TARSEQPTRRPTSADSRARSRARHVSALRSFFRYLGLRHDLSNPAPSLLATPRTKKRLPR 131 Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-DQS 186 L E A + + ET R+ A+ LLYG GLRI EALSL +++ + Q+ Sbjct: 132 PLGEDAARAAAEGI--SDDAETSLAALRDRALFTLLYGTGLRIGEALSLDIRDLTNAGQN 189 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 LR+ GKG K R+VPLLP+V +A+ + P + PLF G+RG LNPGV QR Sbjct: 190 MLRVVGKGGKERLVPLLPAVMEALESWKAAHP---SPTPDAPLFCGVRGGRLNPGVAQRA 246 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 +R R+ GLP S T H LRHSFATHL+ G DLR+IQ ++GH LSTTQ YT + K+ Sbjct: 247 MRTWRKGEGLPDSATPHALRHSFATHLMEGGADLRTIQELMGHASLSTTQAYTLADEKH- 305 Query: 307 GDWMMEIYDQTHPSITQK 324 +++++ + HP Q+ Sbjct: 306 ---LLDVWRKAHPRAGQE 320 >gi|88607956|ref|YP_506332.1| phage integrase family site specific recombinase [Neorickettsia sennetsu str. Miyayama] gi|88600125|gb|ABD45593.1| site-specific recombinase, phage integrase family [Neorickettsia sennetsu str. Miyayama] Length = 307 Score = 186 bits (471), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 120/316 (37%), Positives = 174/316 (55%), Gaps = 16/316 (5%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 ME P + F +L E WL ++ S TL +Y D FL FL+ + E + Sbjct: 1 MECKIDPSV--FTILDEWTRWLGGVKC---FSSNTLVAYSRDLMAFLDFLSTFRGEPVRF 55 Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 ++ + ++RA+++ RR I R+ R+LS +KSF KYL K K ++L + Sbjct: 56 TSLDCIDSKDLRAWLASRRKNSISFRTNARALSSVKSFFKYLAKHKGIINEDVLGVVLRF 115 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 K N+LPR+L K+ + L++ + +T WI RN A+ YLLYG GLRISEALSLT + Sbjct: 116 KPNTLPRSLTFKEIIELIEKF---SFLKTSWIVKRNIALCYLLYGSGLRISEALSLTVAD 172 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240 + + S ++I GKG + R++ LLP VR A+ +Y CPF + L L R G L Sbjct: 173 LTN--SEIKIIGKGGRERMIRLLPIVRVALSDYIASCPFQPDAGGFLFLDRN--GNKLCR 228 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 R +RR LP T H LRHSFATHLL G +R IQ +LGH L++T++YT Sbjct: 229 TAVARAFLSIRRGFNLPDHITPHALRHSFATHLLQEGVGVRKIQELLGHASLASTEVYTK 288 Query: 301 VNSKNGGDWMMEIYDQ 316 +N+++ +ME Y Q Sbjct: 289 LNAES----LMEKYKQ 300 >gi|56417058|ref|YP_154132.1| integrase/recombinase ripx [Anaplasma marginale str. St. Maries] gi|222475424|ref|YP_002563841.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str. Florida] gi|56388290|gb|AAV86877.1| integrase/recombinase ripx [Anaplasma marginale str. St. Maries] gi|222419562|gb|ACM49585.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str. Florida] Length = 316 Score = 182 bits (463), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 113/318 (35%), Positives = 172/318 (54%), Gaps = 14/318 (4%) Query: 11 SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFL-IFLAFYTEEKITIQTIRQLSYT 69 S +LL NWL L ER S T+ +YE D F E +++Q +++L Sbjct: 7 SGDLLSAINNWLCWLREERRYSPNTVAAYERDIMDFYRSVCGEPCERSVSLQEVQELRSA 66 Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 E R++++ R Q S R++S ++SF +YL + S + N+ SLP+ L Sbjct: 67 EFRSWLADRFKQGKQSASNARAISVVRSFFRYLHHKCGMKSSVVFNISKPIVRRSLPKVL 126 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 E Q +++ + W R+ A+ LLYGCGLRISEA+++ ++ D+ LR Sbjct: 127 EEPQMRKVMEE-----PEDLHWTHRRDLAVSALLYGCGLRISEAVNIKFCDLRQDE--LR 179 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYI 247 + GKG K R++P+LP VR I EY CP + +F G+RG L+ F + Sbjct: 180 VLGKGSKERVIPILPWVRCIIDEYVASCPHQRVHGASSTEYVFVGLRGGRLSRTYFAYRM 239 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 + LRR +GLP +TT HTLRHSFATHL G D+R +Q +LGH L+TTQ+YT+++ + Sbjct: 240 KGLRRRIGLPETTTPHTLRHSFATHLFLEGADIRVVQELLGHASLATTQVYTHLDYNS-- 297 Query: 308 DWMMEIYDQTHPSITQKD 325 ++E Y HP +K+ Sbjct: 298 --VIENYRGFHPQTIKKN 313 >gi|255003412|ref|ZP_05278376.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str. Puerto Rico] Length = 312 Score = 182 bits (462), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 113/318 (35%), Positives = 172/318 (54%), Gaps = 14/318 (4%) Query: 11 SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFL-IFLAFYTEEKITIQTIRQLSYT 69 S +LL NWL L ER S T+ +YE D F E +++Q +++L Sbjct: 3 SGDLLSAINNWLCWLREERRYSPNTVAAYERDIMDFYRSVCGEPCERSVSLQEVQELRSA 62 Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 E R++++ R Q S R++S ++SF +YL + S + N+ SLP+ L Sbjct: 63 EFRSWLADRFKQGKQSASNARAISVVRSFFRYLHHKCGMKSSVVFNISKPIVRRSLPKVL 122 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 E Q +++ + W R+ A+ LLYGCGLRISEA+++ ++ D+ LR Sbjct: 123 EEPQMRKVMEE-----PEDLHWTHRRDLAVSALLYGCGLRISEAVNIKFCDLRQDE--LR 175 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYI 247 + GKG K R++P+LP VR I EY CP + +F G+RG L+ F + Sbjct: 176 VLGKGSKERVIPILPWVRCIIDEYVASCPHQRVHGASSTEYVFVGLRGGRLSRTYFAYRM 235 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 + LRR +GLP +TT HTLRHSFATHL G D+R +Q +LGH L+TTQ+YT+++ + Sbjct: 236 KGLRRRIGLPETTTPHTLRHSFATHLFLEGADIRVVQELLGHASLATTQVYTHLDYNS-- 293 Query: 308 DWMMEIYDQTHPSITQKD 325 ++E Y HP +K+ Sbjct: 294 --VIENYRGFHPQTIKKN 309 >gi|255004532|ref|ZP_05279333.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str. Virginia] Length = 311 Score = 182 bits (461), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 113/318 (35%), Positives = 174/318 (54%), Gaps = 15/318 (4%) Query: 11 SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFL-IFLAFYTEEKITIQTIRQLSYT 69 S +LL NWL L ER S T+ +YE D F E +++Q +++L Sbjct: 3 SGDLLSAINNWLCWLREERRYSPNTVAAYERDIMDFYRSVCGEPCERSVSLQEVQELRSA 62 Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 E R++++ R Q S R++S ++SF +YL + S + N + + + SLP+ L Sbjct: 63 EFRSWLADRFKQGKQSASNARAISVVRSFFRYLHHKCGMKSSVVFNTKPIVR-RSLPKVL 121 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 E Q +++ + W R+ A+ LLYGCGLRISEA+++ ++ D+ LR Sbjct: 122 EEPQMRKVMEE-----PEDLHWTHRRDLAVSALLYGCGLRISEAVNIKFCDLRQDE--LR 174 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYI 247 + GKG K R++P+LP VR I EY CP + +F G+RG L+ F + Sbjct: 175 VLGKGSKERVIPILPWVRCIIDEYVASCPHQRVHGASSTEYVFVGLRGGRLSRTYFAYRM 234 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 + LRR +GLP +TT HTLRHSFATHL G D+R +Q +LGH L+TTQ+YT+++ + Sbjct: 235 KGLRRRIGLPETTTPHTLRHSFATHLFLEGADIRVVQELLGHASLATTQVYTHLDYNS-- 292 Query: 308 DWMMEIYDQTHPSITQKD 325 ++E Y HP +K+ Sbjct: 293 --VIENYRGFHPQTIKKN 308 >gi|218673354|ref|ZP_03523023.1| site-specific tyrosine recombinase XerC [Rhizobium etli GR56] Length = 199 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 92/200 (46%), Positives = 131/200 (65%), Gaps = 2/200 (1%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 N L I L+ ER WL+NL ER LS+ TL +YE DTRQFL FL + +T+ I Sbjct: 2 NELLVIADPRLMAERAAWLENLARERRLSEHTLDAYERDTRQFLTFLTGHLAGPVTLSDI 61 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 R+L + RAF++ RR Q G RSL R+L+G++S L++L+K+ + + +R+ K+ Sbjct: 62 RELRPADFRAFLAARRKQGSGARSLGRNLAGLRSLLRHLEKKGLVNAAGAAAIRSPKQPK 121 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 SLP+ L++ QA+T+V N H+ WI AR++A++ LLYGCGLRISEAL L P ++ Sbjct: 122 SLPKPLSDTQAITVVSNE--AQLHDEPWIAARDAAVMTLLYGCGLRISEALDLVPADLPT 179 Query: 184 DQSTLRIQGKGDKIRIVPLL 203 +TLRI GKG+K R+VPLL Sbjct: 180 GAATLRITGKGNKTRLVPLL 199 >gi|329847560|ref|ZP_08262588.1| tyrosine recombinase xerD [Asticcacaulis biprosthecum C19] gi|328842623|gb|EGF92192.1| tyrosine recombinase xerD [Asticcacaulis biprosthecum C19] Length = 303 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 116/305 (38%), Positives = 171/305 (56%), Gaps = 13/305 (4%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 R W L+ +R S TL +Y R + +L + E ++ + +++ ++R +++ Sbjct: 7 RTAWFGWLKGQRRCSAHTLAAYGHAFRGYTDYLRQHWGEA-SLDDVARVTSADLRGWMAY 65 Query: 78 RRTQK--IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 R ++ + RSL + LS +KSF YL + MR + +LPR LNE QA+ Sbjct: 66 LRGKENPLSARSLAQHLSAVKSFHSYLDLHLDRGNVQVGLMRGPRLKATLPRPLNEDQAI 125 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKG 194 L+ + + W ++R+ A+ LLYG GLRISEALSLT + + D +LRI GKG Sbjct: 126 GLLAETRMDADRD-DWENSRDEAVYMLLYGLGLRISEALSLTVADTPLGD--SLRITGKG 182 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 +K+R++P+L +VR+AI Y PF L +L FR RG L+P Q ++ LR L Sbjct: 183 NKMRVLPVLEAVREAIERYKSQQPFILAATDRL--FRAKRGGELSPRHVQATMQHLRSRL 240 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 GL T H LRHSFATH+L +G DLRSIQ +LGH LSTTQ YT V+++ ++ Y Sbjct: 241 GLSDRATPHALRHSFATHMLGSGADLRSIQELLGHASLSTTQKYTQVDAER----LLSAY 296 Query: 315 DQTHP 319 HP Sbjct: 297 AAAHP 301 >gi|254796806|ref|YP_003081643.1| site-specific recombinase, phage integrase family [Neorickettsia risticii str. Illinois] gi|254590046|gb|ACT69408.1| site-specific recombinase, phage integrase family [Neorickettsia risticii str. Illinois] Length = 307 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 116/316 (36%), Positives = 173/316 (54%), Gaps = 16/316 (5%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 ME P + + +L E WL +++ S TL +Y DT FL FL+ + E + Sbjct: 1 MECRIDPSV--YAILDEWTRWLGSVKC---FSSNTLVAYSRDTIAFLDFLSTFRGESVNC 55 Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 ++ + ++RA+++ RR I R+ R+LS +KSF +YL K ++L + Sbjct: 56 ASLEGIDDKDLRAWLASRRKNSISFRTNARALSSVKSFFRYLAKHNGIINEDVLGVVLRF 115 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 K N+LPR+L K+ + L++ + +T WI RN A+ YLLYG GLRISEALSLT + Sbjct: 116 KPNTLPRSLTFKEIIELIEKF---SFLKTGWIVKRNIALCYLLYGSGLRISEALSLTVAD 172 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240 + + + ++I GKG + R++ LLP VR A+ +Y CPF L+ L L R G L Sbjct: 173 LANTE--IKIMGKGSRERMIRLLPIVRVALADYIASCPFQLDGGGFLFLDRN--GNKLCR 228 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 +RR L T H LRHSFATHLL G +R IQ +LGH L++T +YT Sbjct: 229 TAVAGAFLSIRRRFNLSNHITPHALRHSFATHLLQEGVGVRKIQELLGHASLASTAVYTK 288 Query: 301 VNSKNGGDWMMEIYDQ 316 +N+++ +ME Y Q Sbjct: 289 LNAES----LMEKYRQ 300 >gi|225630477|ref|YP_002727268.1| site-specific recombinase, phage integrase family [Wolbachia sp. wRi] gi|225592458|gb|ACN95477.1| site-specific recombinase, phage integrase family [Wolbachia sp. wRi] Length = 306 Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 112/308 (36%), Positives = 170/308 (55%), Gaps = 10/308 (3%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + W + L R S TL+SY D + + FL + ++ + T++ LS E+R++++ R Sbjct: 8 EKWYEWLRCNRSYSPNTLESYMRDLKDLISFLNTHIGGEVNVGTLKNLSIPELRSWLTSR 67 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + RS R+LS I++F KY+K + ++ + +LP+AL+ TL+ Sbjct: 68 YARGVNARSNTRALSVIRNFFKYIKNNHNIDNEAVFSLSRPIQRRTLPKALSIPNIKTLL 127 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + L E W+ R AI+ LLYG GLRISEAL+L +I + +L + GKGDK R Sbjct: 128 KEMKLSDLGEP-WVVKREIAIIVLLYGTGLRISEALNLRVSDI--NNESLIVTGKGDKQR 184 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 V +LP V+K I EY CP+ L+ LF G+RGK L ++++RR L LP Sbjct: 185 QVFILPVVKKCIQEYIKACPY---LDEAQHLFVGVRGKKLGRTYVANRLQKIRRMLNLPE 241 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + H RHSFATHLL D+RSIQ +LGH L TTQIYT++N ++ + +Y Sbjct: 242 ILSPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQIYTHLNYQD----VFNMYKNFQ 297 Query: 319 PSITQKDK 326 + +K K Sbjct: 298 QGLEKKSK 305 >gi|148553149|ref|YP_001260731.1| phage integrase family protein [Sphingomonas wittichii RW1] gi|148498339|gb|ABQ66593.1| phage integrase family protein [Sphingomonas wittichii RW1] Length = 308 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 109/299 (36%), Positives = 166/299 (55%), Gaps = 11/299 (3%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W +L +R S+ T+++Y + + FL + + + +L ++R ++++RR Sbjct: 19 WADHLRRDRRRSEHTVRAYLATAHRLIAFLGRHRGAAVDGALLARLDRGDLRGYLAERRG 78 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + + S R LS +++FL Y+ +R+ + + +KK +PR + + ++ Sbjct: 79 EGLSNVSTARELSAVRNFLDYVAEREGAAKPVKVKGPRIKKG--VPRPVAPDDIAAIAED 136 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 S WI AR+ A+L LLYG GLRI EA++LT +I+ TL + GK K RIV Sbjct: 137 AA--ESAAEPWIAARDEAVLLLLYGAGLRIGEAMALT-GDILPLGDTLSVTGKRAKTRIV 193 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 P+L VR+AI Y L P L FRG RG PL P + +R +R R LGL T Sbjct: 194 PMLAPVREAIERYVALSPHGAAPGEIL--FRGARGGPLAPELIRRAMRAARVRLGLGERT 251 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T H LRHSFATHLL G DLRS+Q +LGH LS+TQ+YT V++ + +M++Y HP Sbjct: 252 TPHALRHSFATHLLGRGADLRSLQELLGHASLSSTQVYTGVDAAH----LMDVYRNAHP 306 >gi|58617409|ref|YP_196608.1| integrase/recombinase [Ehrlichia ruminantium str. Gardel] gi|58417021|emb|CAI28134.1| Integrase/recombinase [Ehrlichia ruminantium str. Gardel] Length = 318 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 110/315 (34%), Positives = 173/315 (54%), Gaps = 12/315 (3%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 EL +W +E E+ S T+ SY D + + FL T +T+ + + ++R Sbjct: 11 ELYDIVNDWKIWMEQEKRYSLNTVVSYVRDLDKLIEFLHKSTGCSVTLNDLVHVKIGDLR 70 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 + + R + + RSLS +++F +YL + + + +LP+ L Sbjct: 71 KWFASRYQCGVEAVTNARSLSALRNFFRYLSRMYYIDSQAVFYLSRPHLKKTLPKVLAGS 130 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 +++ + W+D RN AI+ LLYG G RISE ++L Q++ +D+ L I G Sbjct: 131 HIEIILN---YYKQLPQNWVDMRNFAIMMLLYGSGFRISEVVNLKFQDVREDR--LFITG 185 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQL 250 KG+K R+VP+L V K++ +Y + CP+ L N Q +F G+RGK L+ F +++L Sbjct: 186 KGNKERVVPILSVVYKSLCQYIECCPYYLGARPNNQY-IFVGVRGKKLSRTHFANIMQKL 244 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 R +GLP TTAHT RHSFATHL G D+RS+Q +LGH LSTTQIYT+++ K+ + Sbjct: 245 RAEMGLPDITTAHTFRHSFATHLFIGGADIRSVQELLGHTSLSTTQIYTHLDHKS----I 300 Query: 311 MEIYDQTHPSITQKD 325 +E Y HP I +K+ Sbjct: 301 IEHYKAFHPQIVKKN 315 >gi|57239387|ref|YP_180523.1| integrase/recombinase [Ehrlichia ruminantium str. Welgevonden] gi|57161466|emb|CAH58391.1| putative integrase/recombinase XerD or XerC [Ehrlichia ruminantium str. Welgevonden] Length = 312 Score = 179 bits (453), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 108/314 (34%), Positives = 171/314 (54%), Gaps = 10/314 (3%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 EL +W +E E+ S T+ SY D + + FL T +T+ + + ++R Sbjct: 5 ELYDIVNDWKIWMEQEKRYSLNTVVSYVRDLDKLIKFLHKSTGCSVTLNDLVHVKIGDLR 64 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 + + R + + RSLS +++F +YL + + + +LP+ L Sbjct: 65 KWFASRYQCGVEAVTNARSLSALRNFFRYLSRMYYIDSQAVFYLSRPHLKKTLPKVLAGS 124 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 +++ + W+D RN AI+ LLYG G RISE ++L Q++ +D+ L I G Sbjct: 125 HIEIILN---YYKQLPQNWVDMRNFAIMMLLYGSGFRISEVVNLKFQDVREDR--LFITG 179 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLR 251 KG+K R+VP+L V K++ +Y + CP+ L +F G+RGK L+ F +++LR Sbjct: 180 KGNKERVVPILSMVYKSLCQYIECCPYYLGARPSNQYIFVGVRGKKLSRTHFANIMQKLR 239 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 +GLP TTAHT RHSFATHL G D+RS+Q +LGH LSTTQIYT+++ K+ ++ Sbjct: 240 AEMGLPDITTAHTFRHSFATHLFIGGADIRSVQELLGHTSLSTTQIYTHLDHKS----II 295 Query: 312 EIYDQTHPSITQKD 325 E Y HP I +K+ Sbjct: 296 EHYKAFHPQIVKKN 309 >gi|225677009|ref|ZP_03788023.1| site-specific recombinase, phage integrase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590948|gb|EEH12161.1| site-specific recombinase, phage integrase [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 310 Score = 178 bits (452), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 112/309 (36%), Positives = 174/309 (56%), Gaps = 9/309 (2%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + W + L R S TL+SY D + + FL + ++ + T+ +LS E+R++++ R Sbjct: 8 EKWYEWLRCNRSYSPNTLESYMRDLKDLISFLNTHIGGEVNVGTLEKLSVPELRSWLTSR 67 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + RS R+LS I++F KY+K + ++ + +LP+AL+ TL+ Sbjct: 68 YARGVNARSNARALSVIRNFFKYIKNNYNIDNEAVFSLSRPIQRRTLPKALSIPNIKTLL 127 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + L E+ W+ R AI+ LLY GLRISEAL+L +I ++ +L + GKGDK R Sbjct: 128 KEMKLSDLGES-WVVKREIAIIVLLYSTGLRISEALNLRVSDINNE--SLIVTGKGDKQR 184 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 V +LP V+K I EY CP+ L +N + LF G+RGK L ++++RR L LP Sbjct: 185 QVFILPVVKKCIQEYVKTCPY-LGINDEAQYLFLGVRGKKLGRTYVANRLQKIRRILNLP 243 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + H RHSFATHLL D+RSIQ +LGH L TTQ+YT++N ++ + +Y Sbjct: 244 EILSPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQVYTHLNYQD----VFNMYKNF 299 Query: 318 HPSITQKDK 326 S+ +K K Sbjct: 300 QQSLEKKPK 308 >gi|58579355|ref|YP_197567.1| integrase/recombinase [Ehrlichia ruminantium str. Welgevonden] gi|58417981|emb|CAI27185.1| Integrase/recombinase [Ehrlichia ruminantium str. Welgevonden] Length = 318 Score = 178 bits (452), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 108/314 (34%), Positives = 171/314 (54%), Gaps = 10/314 (3%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 EL +W +E E+ S T+ SY D + + FL T +T+ + + ++R Sbjct: 11 ELYDIVNDWKIWMEQEKRYSLNTVVSYVRDLDKLIKFLHKSTGCSVTLNDLVHVKIGDLR 70 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 + + R + + RSLS +++F +YL + + + +LP+ L Sbjct: 71 KWFASRYQCGVEAVTNARSLSALRNFFRYLSRMYYIDSQAVFYLSRPHLKKTLPKVLAGS 130 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 +++ + W+D RN AI+ LLYG G RISE ++L Q++ +D+ L I G Sbjct: 131 HIEIILN---YYKQLPQNWVDMRNFAIMMLLYGSGFRISEVVNLKFQDVREDR--LFITG 185 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLR 251 KG+K R+VP+L V K++ +Y + CP+ L +F G+RGK L+ F +++LR Sbjct: 186 KGNKERVVPILSMVYKSLCQYIECCPYYLGARPSNQYIFVGVRGKKLSRTHFANIMQKLR 245 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 +GLP TTAHT RHSFATHL G D+RS+Q +LGH LSTTQIYT+++ K+ ++ Sbjct: 246 AEMGLPDITTAHTFRHSFATHLFIGGADIRSVQELLGHTSLSTTQIYTHLDHKS----II 301 Query: 312 EIYDQTHPSITQKD 325 E Y HP I +K+ Sbjct: 302 EHYKAFHPQIVKKN 315 >gi|190570559|ref|YP_001974917.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190356831|emb|CAQ54200.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 306 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 109/308 (35%), Positives = 172/308 (55%), Gaps = 10/308 (3%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + W L+ R S TL+SY D + + FL + E++ + ++ +LS E+R++ + R Sbjct: 8 EKWYDWLKYNRSYSPNTLESYMRDLKDLISFLNTHIGEEVNVGSLEKLSIPELRSWFTSR 67 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + RS R+LS I++F KY+K + ++ + +LP+AL+ TL+ Sbjct: 68 YARGVNARSNTRALSVIRNFFKYIKNNYEINNEAVFSLSRPIQRRTLPKALSISNIETLL 127 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + L E W+ R AI+ LLYG GLRI+EAL+L +I ++ +L + GKGDK R Sbjct: 128 KEMKLPDLGEP-WVVKREIAIVVLLYGTGLRITEALNLKVSDISNE--SLIVTGKGDKQR 184 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 V +LP V+K I +Y CP + + LF G+RGK L ++++RR+L LP Sbjct: 185 QVFILPVVKKCIQKYIKACP---HFDEAGHLFVGVRGKKLGRTYVANRLQKIRRFLNLPE 241 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + H RHSFATHLL D+RSIQ +LGH L TTQ+YT++N ++ + +Y Sbjct: 242 ILSPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQVYTHLNYQD----VFNMYKNFQ 297 Query: 319 PSITQKDK 326 S+ +K K Sbjct: 298 KSLNKKSK 305 >gi|242280181|ref|YP_002992310.1| integrase family protein [Desulfovibrio salexigens DSM 2638] gi|242123075|gb|ACS80771.1| integrase family protein [Desulfovibrio salexigens DSM 2638] Length = 319 Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 113/317 (35%), Positives = 172/317 (54%), Gaps = 22/317 (6%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 NNLPE V Q ++ L++E+ S TL+SY D QF FL K T+ Sbjct: 9 NNLPEPV--------QVFMTYLDVEKRSSAATLRSYAKDISQFEEFL---ETRKKTLAVP 57 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 +++ +RAF++K Q++ ++ R LS ++SF KY+ K + ++ +RN K+ Sbjct: 58 EKITSDLVRAFLAKLHGQRLAKSTMSRKLSSLRSFFKYMTKHRFIQNDPMVGIRNPKQEI 117 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 PR+LN QA+ L+D H E D R+ A+ +LYG GLR+SEA++L +I Sbjct: 118 RHPRSLNVDQAVNLMD---AHVGDEP--ADKRDLALAEMLYGSGLRVSEAITLDLFDIDT 172 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGV 242 +R+ GKG+K R+ PL + KA+ +Y + L Q LF G RG +N Sbjct: 173 SSGVVRVSGKGNKERLSPLSDAACKAVNDYLAVRAELGPALEEQ-ALFVGNRGGRINRRQ 231 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 R + ++ GL H LRHSFA+H+L +G D+RS+Q +LGH LSTTQ YT++N Sbjct: 232 VNRILARMAEGAGLHEGVHPHMLRHSFASHMLQSGADMRSVQELLGHEHLSTTQRYTHLN 291 Query: 303 SKNGGDWMMEIYDQTHP 319 + +M +YD+ HP Sbjct: 292 LQ----QIMNVYDKAHP 304 >gi|42520593|ref|NP_966508.1| phage integrase family site specific recombinase [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410332|gb|AAS14442.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Drosophila melanogaster] Length = 309 Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 111/308 (36%), Positives = 169/308 (54%), Gaps = 7/308 (2%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + W + L R S TL+SY D + + FL + ++ + T+ +LS E+R++++ R Sbjct: 8 EKWYEWLRRNRSYSPNTLESYMRDLKDLISFLNTHIGGEVNVGTLEKLSVPELRSWLTSR 67 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + RS R+LS I++F KY+K + ++ + +LP+AL+ TL+ Sbjct: 68 YARGVNARSNTRALSVIRNFFKYIKNNHNIDNEAVFSLSRPIQRRTLPKALSIPDIKTLL 127 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + L E+ W+ R AI+ LLY GLRISEAL+L +I + +L + GKGDK R Sbjct: 128 KEMKLSDLGES-WVVKREIAIIVLLYSTGLRISEALNLRVSDI--NNESLIVTGKGDKQR 184 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 V +LP V+K I EY CP+ N LF G+RGK L ++++RR L LP Sbjct: 185 QVFILPVVKKCIQEYVKACPYLGTNNETQYLFLGVRGKKLGRTYVANRLQKIRRMLNLPE 244 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + H RHSFATHLL D+RSIQ +LGH L TTQIYT++N ++ + +Y Sbjct: 245 ILSPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQIYTHLNYQD----VFNMYKNFQ 300 Query: 319 PSITQKDK 326 + +K K Sbjct: 301 QGLEKKSK 308 >gi|296114852|ref|ZP_06833500.1| site-specific tyrosine recombinase XerC [Gluconacetobacter hansenii ATCC 23769] gi|295978558|gb|EFG85288.1| site-specific tyrosine recombinase XerC [Gluconacetobacter hansenii ATCC 23769] Length = 324 Score = 176 bits (446), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 111/323 (34%), Positives = 161/323 (49%), Gaps = 37/323 (11%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +W+ + ER S T ++Y D +FL FL + ++ + + LS ++RA+++ Sbjct: 12 DWMAD---ERRASPRTTEAYRGDLHRFLDFLGGHLGGEVDVAALDALSLADLRAWLAFEH 68 Query: 80 TQKIGDRSLKR-------------SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126 Q + R R +S ++SF +YL + + + +LP Sbjct: 69 DQALRPRPGHRVTTRDRAARTRARRVSALRSFFRYLARHHGVDNPAPALLAAPRVKKTLP 128 Query: 127 RALNEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--- 181 R L+ + AL + V + HT R+ A+ LLYGCGLRISEALSL ++ Sbjct: 129 RPLSHEDALEVPQGVGEIAHTPMARM----RDGALFLLLYGCGLRISEALSLDVADLDRA 184 Query: 182 -----MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 D+ LRI GKG K R+VPLLP V +A+ E+ P + PLF G+RG Sbjct: 185 MALGGGADEGVLRIMGKGGKERMVPLLPVVGRALREWRRHHPAPVA---GAPLFPGVRGG 241 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 L V QR +R R GLP T H LRHSFATHL+ G DLR IQ +LGH LSTTQ Sbjct: 242 RLQAAVAQRAMRTWRHMAGLPDHATPHALRHSFATHLMEGGADLRVIQELLGHASLSTTQ 301 Query: 297 IYTNVNSKNGGDWMMEIYDQTHP 319 YT + +++++ + HP Sbjct: 302 RYTLADESR----LLDVWTRAHP 320 >gi|78356628|ref|YP_388077.1| site-specific recombinase XerD-like [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219033|gb|ABB38382.1| Site-specific recombinase XerD-like protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 332 Score = 176 bits (445), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 113/314 (35%), Positives = 170/314 (54%), Gaps = 26/314 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 ++ L +E+G S T++ Y CD QF FL +++ T + I F++ Sbjct: 22 YMGYLALEKGYSSATVRGYACDLAQFEDFL---QRRDMSLDTPADIVPRTIHDFLADLHR 78 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKK----RKITTESNILNMRNLKKSNSLPRALNEKQALT 136 Q +G S+ R LS ++ F +YL + R + TE I N R ++S PRALN QA Sbjct: 79 QHVGKSSMGRKLSALRGFFRYLARKGFIRSVPTE-GITNPRQAQRS---PRALNVDQAYA 134 Query: 137 LVDN---------VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 ++D V + +H+ + + R+ A+ LLYG GLRISEAL+L + Sbjct: 135 VLDTRTQAASRAQVHVRQAHKREQL-TRDLALAELLYGSGLRISEALALDLCHTDPSSGL 193 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 +++ GKG K RIVPL + R+A+ + D+ D++ + +F G RG LN R Sbjct: 194 IKVTGKGSKERIVPLSDTSRQALQLWLDVRETLDVSGGAEQAVFLGARGGRLNRRQALRI 253 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 I L R GLP + + H LRHSFATHLL G D+RS+Q +LGH RL+TTQ YT++ + Sbjct: 254 IEDLCRAAGLPQAVSPHALRHSFATHLLEAGADMRSVQELLGHERLTTTQRYTHLTLRK- 312 Query: 307 GDWMMEIYDQTHPS 320 ++E+YD+ HP Sbjct: 313 ---IVEVYDRAHPG 323 >gi|317153571|ref|YP_004121619.1| tyrosine recombinase XerC [Desulfovibrio aespoeensis Aspo-2] gi|316943822|gb|ADU62873.1| tyrosine recombinase XerC [Desulfovibrio aespoeensis Aspo-2] Length = 313 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 105/310 (33%), Positives = 173/310 (55%), Gaps = 16/310 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L +L +E+G S+ T++SY D QF FL K +++ +++ +R+F+++ Sbjct: 15 RGFLAHLAVEKGYSEATIRSYGTDLEQFDGFL---KRSKRSLEHPERVTRDHVRSFLAEM 71 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 ++G ++ R LS ++++ +YL + ++ T +RN K+ P+ LN QA+ ++ Sbjct: 72 HRLRLGKATMGRKLSSLRAYFRYLLRHRMITTDPTATIRNPKQEKRHPQVLNVDQAVAMM 131 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + ++ E R+ A+ +LYG GLRISEA+ L ++ D +R+ GKG K R Sbjct: 132 EAMI-----EPDPEGLRDLALAEVLYGSGLRISEAVGLDLNDV--DSDVIRVTGKGSKER 184 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGL 256 IVPL + K I Y + + N + LF +R GK LN R + +L GL Sbjct: 185 IVPLSDAAVKRIRRYMEQRHALIGDNYAEQALFLSVRSGKRLNRRQANRIVAKLGGLAGL 244 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 P H LRHSFATH+L G DLRS+Q +LGH RL+TTQ YT+++ ++ +M++YDQ Sbjct: 245 PKDVHPHMLRHSFATHMLEAGADLRSVQELLGHERLTTTQRYTHLDMQH----LMQVYDQ 300 Query: 317 THPSITQKDK 326 HP + K Sbjct: 301 AHPRAKEDGK 310 >gi|323697647|ref|ZP_08109559.1| integrase family protein [Desulfovibrio sp. ND132] gi|323457579|gb|EGB13444.1| integrase family protein [Desulfovibrio desulfuricans ND132] Length = 316 Score = 172 bits (435), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 108/303 (35%), Positives = 168/303 (55%), Gaps = 16/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L LE+E+G S T++SY D QF FL K +++ +L+ +R F+++ Sbjct: 16 RGFLAFLEVEKGYSPATIRSYGTDLEQFEEFL---RGRKASLERPARLNRDHVRGFLAEL 72 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 +++ S+ R LS ++++ KYL + K+ T+ + +RN K+ P+ LN QA++L+ Sbjct: 73 HRRQMTKTSMGRKLSSLRAYFKYLLRHKVITKDPVAGIRNPKQEKHHPQVLNVDQAVSLM 132 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + + E R+ A+ +LYG GLRISEA+ L ++ D +R+ GKG K R Sbjct: 133 EARV-----EPDPEGLRDVALAEVLYGSGLRISEAIGLDLNDV--DSDVIRVTGKGSKER 185 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGL 256 IVPL + I Y L N + LF R GK L+ R + +L + GL Sbjct: 186 IVPLSDAAVARIRRYLGQRHAFLKGNYAEQALFLSSRAGKRLDRRQANRIVARLGKLAGL 245 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 PL HTLRHSFATH+L G DLRS+Q +LGH L+TTQ YT+++ + +M++YD Sbjct: 246 PLDVHPHTLRHSFATHMLEAGADLRSVQELLGHENLTTTQRYTHLDMQR----IMQVYDH 301 Query: 317 THP 319 HP Sbjct: 302 AHP 304 >gi|298529953|ref|ZP_07017355.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509327|gb|EFI33231.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 312 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 114/318 (35%), Positives = 176/318 (55%), Gaps = 14/318 (4%) Query: 10 VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69 ++ L E +L +L++E+G S TLQ+Y D Q+ FL T K T + + + Sbjct: 4 IADSLPDEATAFLAHLDVEKGFSGATLQAYSKDLLQWEEFL--QTRNK-TCASPQDIVRA 60 Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 ++ AF+ + + S+ R LS +++F ++L+K+KI ++ +RN K+ P L Sbjct: 61 DVHAFLVQMHKLNLSKSSMARKLSSLRTFFRFLQKQKIIQQNPCTGVRNPKQEKPQPGVL 120 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 N QAL +V L E + R+ A+ +LYG GLR+SEALSL ++ QS +R Sbjct: 121 NVDQALEMVQAQL-----EPSPRNTRDLALAEVLYGSGLRVSEALSLDLDDVDQGQSLVR 175 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 +QGKG K R+ L + + +Y L F+ +L + LF G+RG L+ R I+ Sbjct: 176 VQGKGRKERLAFLTRPGLERLSQYIALRHAFEPDLR-EKALFLGMRGGRLHRREAVRIIQ 234 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 +L + + HTLRHSFATH+L G DLR +Q +LGH R+STTQ YT++N D Sbjct: 235 RLGQIFARAQGVSPHTLRHSFATHMLQAGADLRIVQELLGHSRISTTQRYTHLNL----D 290 Query: 309 WMMEIYDQTHPSITQKDK 326 +M+ YD+ HP +KDK Sbjct: 291 QVMQTYDKAHPLAREKDK 308 >gi|304322147|ref|YP_003855790.1| integrase/recombinase XerC [Parvularcula bermudensis HTCC2503] gi|303301049|gb|ADM10648.1| integrase/recombinase XerC, putative [Parvularcula bermudensis HTCC2503] Length = 315 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 103/299 (34%), Positives = 163/299 (54%), Gaps = 8/299 (2%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L++LE + S T+++Y +F F + ++ + I + + RAF++ RR Sbjct: 19 FLRHLETQTRASPYTIRNYRQTIDRFSDFARRHRGGEVDLVDIARWRTADFRAFLADRRA 78 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + I +L+ LS +K +++ +R + + + +R K LPR + + AL L + Sbjct: 79 EGIAPPTLRLDLSALKQLFRFIDRRTGSETTPLYALRTPKAPRRLPRPIGQAPALALAEA 138 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 H W R+ A+ LLYG GLR+SEAL+L +++ +LR+ GKG K+R V Sbjct: 139 A----EHTQDWTVHRDRALFALLYGAGLRLSEALALDRRDLPPRGVSLRVLGKGAKMRDV 194 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 PLL VR I Y D + N LF G +G+ L+PGV QR +R+ R LGL Sbjct: 195 PLLDVVRTRIDTYLDHRDKAIPGNTAPALFLGAKGRRLSPGVAQRALRRERATLGLSDDA 254 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T H LRH+FATHLL+ G DLR++Q++LGH L TTQ YT +++ ++ ++ HP Sbjct: 255 TPHALRHAFATHLLAAGTDLRTLQTLLGHSSLKTTQGYTEIDAGR----LLAVHAAAHP 309 >gi|303248297|ref|ZP_07334559.1| integrase family protein [Desulfovibrio fructosovorans JJ] gi|302490322|gb|EFL50234.1| integrase family protein [Desulfovibrio fructosovorans JJ] Length = 331 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 102/306 (33%), Positives = 158/306 (51%), Gaps = 9/306 (2%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L ++G S TL +Y D QF FL I++ T +++ R F+++ Sbjct: 25 FLDYLAAQKGYSPATLAAYGVDLDQFEEFL---RGRGISLATPEKVAREHGRGFLAELHR 81 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 ++ S+ R LS ++ F +Y+ ++K+ + ++N K P+ALN +A+ LV Sbjct: 82 RREAKTSMGRKLSALRGFFRYMLRKKLVAADPLAGLKNPKTDKRQPKALNVDEAVALVSP 141 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + + R+ A+ LLYG GLR++EA+ L ++ Q R+ GKG K R+ Sbjct: 142 APGAPAADGSREACRDLALAELLYGSGLRVAEAVGLDLDDVSIAQGVARVYGKGGKERLA 201 Query: 201 PLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 PL + R+ + EY F + Q F G RG LN R + L R G+ Sbjct: 202 PLSDASRERLREYAMRRAEFTPDPREQA-FFLGSRGGRLNRRQAARIVDALAREAGIAKH 260 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T H LRHSFATHLL +G D+RS+Q +LGH RLSTTQ YT++ +M++YD+ HP Sbjct: 261 THPHMLRHSFATHLLESGADMRSVQELLGHARLSTTQRYTHLELAR----IMQVYDKAHP 316 Query: 320 SITQKD 325 + D Sbjct: 317 RSDEAD 322 >gi|58697179|ref|ZP_00372594.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Drosophila simulans] gi|58536507|gb|EAL59887.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Drosophila simulans] Length = 278 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 101/264 (38%), Positives = 152/264 (57%), Gaps = 6/264 (2%) Query: 42 DTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY 101 D + + FL + ++ + T++ LS E+R++++ R + + RS R+LS I++F KY Sbjct: 3 DLKDLISFLNTHIGGEVNVGTLKNLSIPELRSWLTSRYARGVNARSNTRALSVIRNFFKY 62 Query: 102 LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161 +K + ++ + +LP+AL+ TL+ + L E W+ R AI+ Sbjct: 63 IKNNHNIDNEAVFSLSRPIQRRTLPKALSIPNIKTLLKEMKLSDLGEP-WVVKREIAIIV 121 Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221 LLYG GLRISEAL+L +I + +L + GKGDK R V +LP V+K I EY CP+ Sbjct: 122 LLYGTGLRISEALNLRVSDI--NNESLIVTGKGDKQRQVFILPVVKKCIQEYIKACPY-- 177 Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281 L+ LF G+RGK L ++++RR L LP + H RHSFATHLL D+R Sbjct: 178 -LDEAQHLFVGVRGKKLGRTYVANRLQKIRRMLNLPEILSPHAFRHSFATHLLQEDIDIR 236 Query: 282 SIQSILGHFRLSTTQIYTNVNSKN 305 SIQ +LGH L TTQIYT++N ++ Sbjct: 237 SIQQLLGHSSLETTQIYTHLNYQD 260 >gi|283852866|ref|ZP_06370128.1| integrase family protein [Desulfovibrio sp. FW1012B] gi|283571776|gb|EFC19774.1| integrase family protein [Desulfovibrio sp. FW1012B] Length = 319 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 101/299 (33%), Positives = 155/299 (51%), Gaps = 7/299 (2%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +L +E+G S TL +Y D QF LA +T+ ++ R F+++ Sbjct: 21 YLDHLRVEKGYSPATLAAYAEDLAQFEESLAG---RGLTLAAPGAVTLEAARGFLAELHR 77 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 +++ S+ R LS ++ +L+++K T + ++N K P+ALN +A+ LV Sbjct: 78 RRVAKSSMGRKLSALRGLFTFLRRKKRVTGDPLAGLKNPKTDKRQPKALNVDEAVALVTP 137 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + + R+ A+ LLYG GLR+SEA++L ++ Q +R+ GKG K R+ Sbjct: 138 GPESPAADGSREACRDLALAELLYGSGLRVSEAMTLDVDDLDLSQGIVRVMGKGGKERLA 197 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 PL + R + EY + F G RG L+ R I L R GL Sbjct: 198 PLSDAARVRLGEYARRRAEFAPAPREPAFFLGARGGRLDRRQAARIIDALARGAGLARHA 257 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHSFATHLL +G D+RS+Q +LGH RLSTTQ YT+++ +M++YDQ HP Sbjct: 258 HPHMLRHSFATHLLESGADMRSVQELLGHARLSTTQRYTHLDLAR----LMQVYDQAHP 312 >gi|332704250|ref|ZP_08424338.1| Tyrosine recombinase xerC [Desulfovibrio africanus str. Walvis Bay] gi|332554399|gb|EGJ51443.1| Tyrosine recombinase xerC [Desulfovibrio africanus str. Walvis Bay] Length = 313 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 114/320 (35%), Positives = 169/320 (52%), Gaps = 18/320 (5%) Query: 9 IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68 I FEL +L +L++E+G S T+Q+Y D QF FL + ++ + Sbjct: 8 IPEFELPDSCLAFLVHLDVEKGYSPATVQAYGRDVEQFERFL---SRRDRSLAEPEGVDR 64 Query: 69 TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 ++R+F+++ + S+ R LS +++ +YL+K + T + + + N K+ P++ Sbjct: 65 DDVRSFLAELHRMGVRKSSMSRKLSSLRTLFRYLRKSGLATGNPMAGVGNPKQDKRHPKS 124 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 LN QAL +++ S + + R+ A+ LLYG GLRISEAL L +I L Sbjct: 125 LNVDQALAVMEA---QVSAGPEGL--RDLALAELLYGSGLRISEALDLNVDDIDPGSGIL 179 Query: 189 RIQGKGDKIRIVPLL-PSVR--KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245 R+ GKG K RIVPL SVR K+ L P + + LF G RG LN R Sbjct: 180 RVMGKGRKERIVPLSDASVRRLKSYLVQRHAFPVEPQ---ERALFLGSRGGRLNRRQAAR 236 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + + GLP S + HTLRHSFA+HLL +G LRS+Q +LGH RL+TTQ YT++N Sbjct: 237 IVEHMAGLAGLPQSISPHTLRHSFASHLLQSGAGLRSVQELLGHKRLTTTQRYTHLNLAQ 296 Query: 306 GGDWMMEIYDQTHPSITQKD 325 + YD HP +KD Sbjct: 297 ----ITRAYDAAHPRSKKKD 312 >gi|213019194|ref|ZP_03335001.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995303|gb|EEB55944.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 278 Score = 166 bits (421), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 101/285 (35%), Positives = 161/285 (56%), Gaps = 10/285 (3%) Query: 42 DTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY 101 D + + FL + E++ + ++ +LS E+R++ + R + + RS R+LS I++F KY Sbjct: 3 DLKDLISFLNTHIGEEVNVGSLEKLSIPELRSWFTSRYARGVNARSNTRALSVIRNFFKY 62 Query: 102 LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161 +K + ++ + +LP+AL+ TL+ + L E W+ R AI+ Sbjct: 63 IKNNYEINNEAVFSLSRPIQRRTLPKALSISNIETLLKEMKLPDLGEP-WVVKREIAIVV 121 Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221 LLYG GLRI+EAL+L +I ++ +L + GKGDK R V +LP V+K I +Y CP Sbjct: 122 LLYGTGLRITEALNLKVSDISNE--SLIVTGKGDKQRQVFILPVVKKCIQKYIKACP--- 176 Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281 + + LF G+RGK L ++++RR+L LP + H RHSFATHLL D+R Sbjct: 177 HFDEAGHLFVGVRGKKLGRTYVANRLQKIRRFLNLPEILSPHAFRHSFATHLLQEDIDIR 236 Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326 SIQ +LGH L TTQ+YT++N ++ + +Y S+ +K K Sbjct: 237 SIQQLLGHSSLETTQVYTHLNYQD----VFNMYKNFQKSLNKKSK 277 >gi|239787464|emb|CAX83935.1| Tyrosine recombinase XerC subunit [uncultured bacterium] Length = 321 Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 104/303 (34%), Positives = 164/303 (54%), Gaps = 10/303 (3%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 ++L +ER LS T+ +Y D F + +T + +RQ+ ++RAF+ + + Sbjct: 13 RHLAVERRLSPNTVSAYLRDLELFGRYWCQRHGGGLTEEQLRQMRPEDLRAFMGMGQREG 72 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 +L+R ++ ++++ +YL++ + + + + K++ LPRA E+ L++++ Sbjct: 73 AAKSTLQRRMASVRAWFRYLEREGLAENNPAALVASPKQAQRLPRAPTEEDTARLIESLP 132 Query: 143 LHTSHE--TKWIDAR---NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 T W R + AIL LLYG GLRI E L ++ Q+ +R+ GKG K Sbjct: 133 PPGPQSPLTGWARVRLLRDGAILELLYGSGLRIGELCGLDRLDLNLRQAEVRVLGKGGKE 192 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 R+VPL +A+ Y + + L P+F G +G LNP QR + +LRR LGL Sbjct: 193 RLVPLGSMAIQALERYLEARKAEAPPPDHLGPVFTGRQGGRLNPREVQRLVVKLRRRLGL 252 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 P T H LRH+FATHLL G DLRSIQ +LGH L+TTQ YT+++ N + +IYD Sbjct: 253 PEKVTPHALRHAFATHLLQAGADLRSIQEMLGHASLTTTQRYTHLDLAN----LTKIYDA 308 Query: 317 THP 319 HP Sbjct: 309 AHP 311 >gi|94986556|ref|YP_594489.1| site-specific recombinase XerC [Lawsonia intracellularis PHE/MN1-00] gi|94730805|emb|CAJ54167.1| Site-specific recombinase XerC [Lawsonia intracellularis PHE/MN1-00] Length = 313 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 110/305 (36%), Positives = 165/305 (54%), Gaps = 12/305 (3%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L + +G S T +Y D QF ++L +T++ ++ I+ F + Sbjct: 8 ETFLSWLNLHKGFSLATQDAYRRDISQFEVYLRTI---GLTLEHPEHINKKHIQQFSASL 64 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 +K+ S+ R L+ ++S +YL K ++ + + N K+ P LN Q L+ Sbjct: 65 YYKKLTRTSIARKLAALRSLFRYLLKTHHIKDNPAVGVHNPKQHVKYPEILNVDQVFLLL 124 Query: 139 D--NVLLHTSHE--TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 N +L TSH I RN+A+L LLYG GLRISEAL L +I + +R+ GKG Sbjct: 125 KGANNILKTSHTGLELAIAHRNNALLELLYGSGLRISEALCLNVSDIRTEDGFVRVIGKG 184 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 +K R+ PL + A+ E+ + L Q LF G+RGK L+ R + +L Sbjct: 185 NKERLAPLSDTSIVALEEWLAIRHMVATLGEQ-ALFVGVRGKRLHRRQTIRILEELCLQA 243 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 GLPL+T HTLRHSFATHLL G +LR++Q +LGH RLSTTQ YT++ D +++ Y Sbjct: 244 GLPLTTAPHTLRHSFATHLLEGGANLRAVQELLGHARLSTTQRYTHITL----DKLIQAY 299 Query: 315 DQTHP 319 D+ HP Sbjct: 300 DKAHP 304 >gi|303326955|ref|ZP_07357397.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3] gi|302862943|gb|EFL85875.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3] Length = 331 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 107/321 (33%), Positives = 169/321 (52%), Gaps = 16/321 (4%) Query: 7 PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66 P++ ++ + +L L +++G S T ++Y D Q +FL E+ + ++ Sbjct: 24 PDMAGLQI----EAFLSWLAVQKGASDATQKAYGADLTQLAVFL---REQGADLARPGEV 76 Query: 67 SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126 S I+AF++ + S+ R L+ ++SF ++L + +E+ +RN ++ P Sbjct: 77 SRKHIQAFLAWLFRRGEAKSSMARKLAAVRSFFRFLLRSGRVSENVAAQVRNPRQEKHHP 136 Query: 127 RALNEKQALTLVDN---VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 RALN + L+D +H + + R+ A+ LLYG GLRISEALSL + Sbjct: 137 RALNVDETFALLDTPKAAPPSEAHAARLL-CRDLALAELLYGSGLRISEALSLDLDDAQL 195 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 LR+ GKG + R+ PL + +A+ + + L L + LF G RG LN Sbjct: 196 RSRVLRVMGKGSRERLSPLSDTSCEALAAWLAERSY-LALPEEQALFVGARGARLNRREA 254 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 R I L R GL + + H+LRHSFATHLL+ G DLRS+Q +LGH RL+TTQ YT V+ Sbjct: 255 ARIIAGLCRRAGLAFTVSPHSLRHSFATHLLAAGADLRSVQELLGHRRLTTTQRYTQVSL 314 Query: 304 KNGGDWMMEIYDQTHPSITQK 324 ++ ++ YDQ HP +K Sbjct: 315 EH----LIRAYDQAHPRSGKK 331 >gi|330993163|ref|ZP_08317100.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1] gi|329759714|gb|EGG76221.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1] Length = 349 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 119/324 (36%), Positives = 164/324 (50%), Gaps = 28/324 (8%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI-- 75 R +L +E ER S LTL +Y D +FL FL + + + LS ++RA++ Sbjct: 27 RDAFLHWMETERRASPLTLAAYRGDLDRFLAFLVGHLGAGPDLAALAGLSLADLRAWLAH 86 Query: 76 ------SKRR--TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127 S RR TQ R+ R +S ++SF +YL + + + LPR Sbjct: 87 EHAAALSGRRATTQDRAARTRARRVSALRSFYRYLARYHGVDNPAPGLLATPRTRRPLPR 146 Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS- 186 L QAL + + V +H T R+ A+ LLYGCGLRISEAL L +++ Q+ Sbjct: 147 PLPTAQALDVPEGVA-DIAH-TPLARVRDGALFMLLYGCGLRISEALGLDVRDLDRAQAL 204 Query: 187 --------TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238 LRIQGKG + R+VP+LP V A+ + + P PLF G+RG L Sbjct: 205 GEGTKGDGVLRIQGKGGRERMVPVLPQVMAALRRWRGVHPLP---QADAPLFVGVRGGRL 261 Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 G+ QR +R R GLP T H LRHSFATHL+ G DLR IQ +LGH LSTTQ Y Sbjct: 262 QAGIAQRAMRTWRHMAGLPEHATPHALRHSFATHLMEGGADLRVIQDLLGHASLSTTQRY 321 Query: 299 TNVNSKNGGDWMMEIYDQTHPSIT 322 T + +M+++ + HP T Sbjct: 322 TLADEAR----LMDVWTRAHPHAT 341 >gi|220904240|ref|YP_002479552.1| integrase family protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868539|gb|ACL48874.1| integrase family protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 373 Score = 162 bits (411), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 102/309 (33%), Positives = 163/309 (52%), Gaps = 16/309 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + +++G S+ T ++Y D Q FL ++I + + ++ ++AF++ Sbjct: 68 EAFLAWMTVQKGASEATRKAYAVDLAQLAEFL---RGQEIDLGQPQTVTRRHMQAFLAWL 124 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S+ R L+ +SF ++ + E+ +RN ++ PRALN + L+ Sbjct: 125 FRKGEAKSSMARKLAAARSFFRFQMRGGKVAENVAAQVRNPRQEKRHPRALNVDETFALL 184 Query: 139 DNVL--------LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 D+ + S E + I R+ A+ LLYG GLRISEALSL ++ LR+ Sbjct: 185 DSATGPGGKRGPVAGSAEEERILCRDLALAELLYGSGLRISEALSLDVDDVQLSSRVLRV 244 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 GKG + R+ PL + + + + P L L + LF G RG LN R + +L Sbjct: 245 MGKGSRERLAPLSDTSFSCLKAWLEERPL-LALPDEAALFVGARGARLNRREAARIVERL 303 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 R GL + + H+LRHSFATHLL G D+RS+Q +LGH RL+TTQ YT V+ ++ + Sbjct: 304 CRRAGLTFTVSPHSLRHSFATHLLEAGADMRSVQELLGHQRLTTTQRYTQVSLES----L 359 Query: 311 MEIYDQTHP 319 M+ YDQ HP Sbjct: 360 MQTYDQAHP 368 >gi|295399802|ref|ZP_06809783.1| tyrosine recombinase XerC [Geobacillus thermoglucosidasius C56-YS93] gi|312111686|ref|YP_003990002.1| tyrosine recombinase XerC [Geobacillus sp. Y4.1MC1] gi|294978205|gb|EFG53802.1| tyrosine recombinase XerC [Geobacillus thermoglucosidasius C56-YS93] gi|311216787|gb|ADP75391.1| tyrosine recombinase XerC [Geobacillus sp. Y4.1MC1] Length = 300 Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 100/304 (32%), Positives = 159/304 (52%), Gaps = 17/304 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +++ L+IE+ S+ T+ Y+ D QF F+ + I + +++Y+++R +++K Sbjct: 9 QLFIEYLQIEKNYSQYTIVCYQRDIEQFFEFM-----NEQGIHDLAEVTYSDVRLYLTKL 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 QK RS+ R +S ++SF K+L + K E+ KK +P L E++ Sbjct: 64 YEQKQSSRSVSRKISSLRSFYKFLLREKKVLENPFALAALPKKEQKIPNFLYEQEL---- 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 +L H + I RN A+L LLY G+R+SE + +I ST+ I GKG K R Sbjct: 120 -EILFHVNDVNTAIGQRNQAMLELLYATGVRVSECCHIQLSDIDFSSSTILIHGKGSKQR 178 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLG 255 VP ++A+ Y +L N + LF RG PL P + + ++ + Sbjct: 179 YVPFGRFAKEALERYIHHGRRELLQNAKAAHAYLFVNARGNPLTPRGARYILDEMVKKAA 238 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 L + H LRH+FATHLL+ G D+R++Q +LGH LS+TQ+YT+V D + IY Sbjct: 239 LTQHVSPHVLRHTFATHLLNEGADMRAVQELLGHAHLSSTQVYTHVTK----DRLRHIYL 294 Query: 316 QTHP 319 QTHP Sbjct: 295 QTHP 298 >gi|212703032|ref|ZP_03311160.1| hypothetical protein DESPIG_01070 [Desulfovibrio piger ATCC 29098] gi|212673620|gb|EEB34103.1| hypothetical protein DESPIG_01070 [Desulfovibrio piger ATCC 29098] Length = 327 Score = 159 bits (402), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 115/338 (34%), Positives = 181/338 (53%), Gaps = 29/338 (8%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 +E + + E + E +++L L+++RGLS T +Y D RQ +FLA + ++ Sbjct: 5 IEKDTMEEELDPRTTLEIESFLAWLDVQRGLSPTTQIAYGTDLRQLALFLA---QRGASL 61 Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL-NMRNL 119 ++S I+A++++ ++ R L+ ++F +Y ++R TE+N+ +RN Sbjct: 62 ARPAEVSKKHIQAWLARLYALGEAKSTMARKLAAARTFFRY-QQRMGRTENNVAAQVRNP 120 Query: 120 KKSNSLPRALNEKQALTLVD--NVLLHTSHE------TKWIDARNSAILYLLYGCGLRIS 171 K+ PR LN QA ++D + L T + AR+ A+ LLYG GLRIS Sbjct: 121 KQEQRHPRVLNVDQAFAVLDTPDALAGTGSPRIPPATGDALAARDHALAELLYGSGLRIS 180 Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQL 227 EAL L ++ D+S +R+ GKG + R+ PL + ++R + + L P + Sbjct: 181 EALGLDVTDLRLDESVVRVFGKGARERMSPLSDTSVTALRAWLEQRGTLAP-----EGEK 235 Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286 LF G RG L+ R I +L R G+ P+S H LRHSFATHLL G DLRS+Q + Sbjct: 236 ALFVGARGGRLDRREAMRRIERLCRNAGVEPVSP--HALRHSFATHLLDAGADLRSVQEL 293 Query: 287 LGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 LGH RL+TTQ YT V+ + +M +YD+ HP +K Sbjct: 294 LGHQRLTTTQRYTRVSLER----LMHLYDEAHPRAQKK 327 >gi|167752437|ref|ZP_02424564.1| hypothetical protein ALIPUT_00681 [Alistipes putredinis DSM 17216] gi|167660678|gb|EDS04808.1| hypothetical protein ALIPUT_00681 [Alistipes putredinis DSM 17216] Length = 309 Score = 159 bits (401), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 100/306 (32%), Positives = 163/306 (53%), Gaps = 17/306 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFL----AFYTEEKITIQTIRQLSYTEIRAF 74 Q +LQ L R S LT+Q+Y D FL +L A + +IT++ +R+ Sbjct: 3 QEFLQYLATVRRFSPLTVQNYRRDVTNFLEWLDVPEADFDPRRITVEDVREW-------I 55 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 + + T+ +G S+ R LS ++SF +YL + + + + LK S +P + + Sbjct: 56 VHRTETKHLGAASMNRELSSLRSFFRYLHRTGRIDKEVMYRIHALKTSRRIPAFVPSTRM 115 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 ++D L S ++ RNS I+ L Y CGLR++E + + + D + L+++GKG Sbjct: 116 EGILDE-LDRESESPEFKFVRNSLIVLLFYSCGLRLAELVGIDRDDFSGDYTALKVRGKG 174 Query: 195 DKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 DK RIVP+LP VR+ IL Y D + + ++ + LF +GK ++ R ++ R Sbjct: 175 DKERIVPILPPVREKILHYLDEIDRQGICISKEKALFLNQQGKRISRSTVYRTVQSQLRQ 234 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ + H LRH+FAT LL+NG D+R+IQ +LGH L TQ+YT+ N + +I Sbjct: 235 GGVQGKKSPHVLRHTFATELLNNGADMRAIQELLGHASLQATQVYTH----NSIAKLQKI 290 Query: 314 YDQTHP 319 Y + HP Sbjct: 291 YSKAHP 296 >gi|256828291|ref|YP_003157019.1| integrase family protein [Desulfomicrobium baculatum DSM 4028] gi|256577467|gb|ACU88603.1| integrase family protein [Desulfomicrobium baculatum DSM 4028] Length = 312 Score = 158 bits (400), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 98/306 (32%), Positives = 165/306 (53%), Gaps = 12/306 (3%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L+ +RG S T+ +Y D +FL ++ +++ +I A+++ Sbjct: 15 FLLYLDAQRGYSPATVAAYGTDLEGAHLFLGRRSK---GFDAPGEVTKADITAYLADLHR 71 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + S+ R LS +++F ++L++RK+ E + N K P+ LN QA+ LV+ Sbjct: 72 RGLAKSSVCRKLSALRAFYRFLRQRKMVVEDPCAALANPKLPKVHPKVLNVDQAIHLVET 131 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + + + + + R+ A+L +LYG GLR+SEAL L ++ DQ +R+ GKG K R+V Sbjct: 132 EI---TLDPEGL--RDLALLEVLYGSGLRVSEALGLDFAHVDLDQKLVRVLGKGRKERLV 186 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 PL + + Y + + +F G RG L+ R ++++ G P S Sbjct: 187 PLTGPAAERLARYIEQRGAFAPAAREQAVFLGKRGGRLSRKQADRIVKEMAVRSGAPCSI 246 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 + HTLRHSFA+H+L G DLRS+Q +LGH R+STTQ YT+++ +M +YD HP Sbjct: 247 SPHTLRHSFASHMLQAGADLRSVQELLGHSRISTTQRYTHLDLAQ----VMRVYDAAHPL 302 Query: 321 ITQKDK 326 +KD+ Sbjct: 303 AAKKDE 308 >gi|158522508|ref|YP_001530378.1| integrase family protein [Desulfococcus oleovorans Hxd3] gi|158511334|gb|ABW68301.1| integrase family protein [Desulfococcus oleovorans Hxd3] Length = 308 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 103/304 (33%), Positives = 159/304 (52%), Gaps = 19/304 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY--TEEKITIQTIRQLSYTEIRAFISKR 78 ++++L E+G S T ++Y D ++FL FL+ TE + + I S IR +++ Sbjct: 17 FVESLASEKGYSPNTCRAYSADLKEFLAFLSPPDDTEHPVCLDDI---SVIAIRGYLAFL 73 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 +K+ ++ R LS ++SF +YL+KR I T + + + K +P L+ V Sbjct: 74 HKKKMDKSTVSRKLSVLRSFFRYLEKRGIMTGNPARAVLSPKIGRKIPAFLS-------V 126 Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 D++ LL S +D RN AI +Y G+R+SEA L ++ D+ R+ GKG K Sbjct: 127 DDMFRLLDASTGDTLLDLRNRAIFETIYSTGIRVSEAAGLDAAHVETDERVFRVYGKGAK 186 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 R+VP+ +I Y + + ++ PLF L R ++Q G Sbjct: 187 ERVVPVGKKALASIAAYRTRLFEETGIGVEEGPLFLNKNRGRLTTRSMDRILKQTALRCG 246 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 L +S + H LRHSFATH+L G DLR++Q ILGH LSTTQ YT+V+ D +ME+YD Sbjct: 247 LTVSLSPHALRHSFATHMLDAGADLRTVQEILGHKSLSTTQKYTHVSM----DKLMEVYD 302 Query: 316 QTHP 319 HP Sbjct: 303 HAHP 306 >gi|146297890|ref|YP_001192481.1| phage integrase family protein [Flavobacterium johnsoniae UW101] gi|146152308|gb|ABQ03162.1| phage integrase family protein [Flavobacterium johnsoniae UW101] Length = 298 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 116/311 (37%), Positives = 169/311 (54%), Gaps = 27/311 (8%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE----KITIQTIRQLSYTE 70 +K+ Q++L+ IERGLSK T+++Y D + +FL E KIT +TI+Q Y Sbjct: 7 IKDYQSYLR---IERGLSKNTIENYSFDIERLCLFLETNQIEVSPLKITDETIQQFIYA- 62 Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 ISK ++ RS R +SG+KSF YL +S + + + K LP L Sbjct: 63 ----ISK----EVNPRSQARIISGLKSFFSYLVFEDYRNDSPLELIESPKTGRKLPDTLA 114 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 K+ L+D + L +S+E + RN AIL LYGCGLR+SE +SL ++ D+ ++I Sbjct: 115 VKEIDALIDAIDL-SSNEGE----RNRAILESLYGCGLRVSELVSLKISDLYFDEGFIKI 169 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIR 248 GKG+K R VP+ +K I Y + LN+ + LF RG L + I+ Sbjct: 170 TGKGNKERFVPIGKLTQKYIQIYQNEVRVHLNIKKGCEDTLFLNRRGNQLTRAMIFTIIK 229 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 L + L S + HTLRHSFATHLL NG DLRSIQ +LGH ++TT+IY +++ Sbjct: 230 DLAVKINLNKSISPHTLRHSFATHLLENGADLRSIQLMLGHESITTTEIYVHLDRS---- 285 Query: 309 WMMEIYDQTHP 319 ++ E+ HP Sbjct: 286 FLKEVMHSYHP 296 >gi|171910181|ref|ZP_02925651.1| hypothetical protein VspiD_03395 [Verrucomicrobium spinosum DSM 4136] Length = 318 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 101/304 (33%), Positives = 163/304 (53%), Gaps = 22/304 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L +E+ER S TL++Y ++ + + + T L+ + R ++ ++ Sbjct: 31 DFLTFMEVERSASPKTLENYRHA-------MSTFRKSQPACMTWESLTPDDFRLYLYEQM 83 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 ++G +++ + ++SF K+L +R+ ++ +L ++ K LP L Q TL+ Sbjct: 84 KAELGRATIRLHFAALRSFFKFLTRRRGLVKNPLLEVQLPKPEKKLPVVLTLSQVETLL- 142 Query: 140 NVLLHTSHETK---WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 N+ L+T E + W R++AIL L Y G+RISE SL +++ TLR+ GKG K Sbjct: 143 NLPLNTPREKQAPAWAPERDAAILELFYSTGVRISELASLNVEDVDVYSETLRVIGKGRK 202 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RI P+ +A+ Y L + PLFR GK + + + + G Sbjct: 203 ERICPVGGPAIRAMQRYQS------RLGVYSGPLFRSKVGKRMTNQAINNVVEKYWKLSG 256 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 LP+ T H LRHSFATHLL+NG DLRS+Q++LGH LSTTQIYT+V ++ M E+Y+ Sbjct: 257 LPVQVTPHKLRHSFATHLLNNGADLRSVQTLLGHASLSTTQIYTHVTTER----MKEVYE 312 Query: 316 QTHP 319 HP Sbjct: 313 DAHP 316 >gi|302879884|ref|YP_003848448.1| tyrosine recombinase XerC [Gallionella capsiferriformans ES-2] gi|302582673|gb|ADL56684.1| tyrosine recombinase XerC [Gallionella capsiferriformans ES-2] Length = 317 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 106/309 (34%), Positives = 162/309 (52%), Gaps = 23/309 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +L L ER SKLT +SY D E T + +L + IR +I++ Sbjct: 28 QGYLAWLLGERRYSKLTAESYARDLAHLF--------ELSTGLALNELKVSHIRRYIAQL 79 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + +G RSL R LS + F YL + T++ + +R K + +LP+ L+ QA+ +V Sbjct: 80 HSSGLGGRSLARLLSAWRGFYNYLLRDHGFTDNPCVGLRAPKSARALPQVLSPDQAVRMV 139 Query: 139 DNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGD 195 D T D+ R+ A+ L Y GLR+ E + L ++I D +R+ GKG Sbjct: 140 DL-------PTDAPDSIRDKAMFELFYSSGLRLMELIDLDAESIRSDITAGEVRVTGKGH 192 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 K RIVPL A+ E+ + P N+ + LF G RG ++P V Q ++Q G Sbjct: 193 KTRIVPLGGCAISALHEWLAVRPTLANIG-ERALFVGARGARISPRVVQLRMKQWGIKQG 251 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + S H LRHSFATH+L + GDLR++Q +LGH +STTQ+YT+++ + ++ +IYD Sbjct: 252 ITSSVHPHMLRHSFATHVLQSSGDLRAVQEMLGHASISTTQVYTHLDFQ----YLSKIYD 307 Query: 316 QTHPSITQK 324 HP +K Sbjct: 308 AAHPRAKRK 316 >gi|227893483|ref|ZP_04011288.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047] gi|227864708|gb|EEJ72129.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047] Length = 303 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 102/316 (32%), Positives = 174/316 (55%), Gaps = 18/316 (5%) Query: 9 IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68 +V+ +L + ++L+ ++ERGLS T+ +Y D ++L F+ EK + + Sbjct: 3 MVNSKLQDQIDDYLRYSQVERGLSSNTISAYRQDLEEYLSFI-----EKEGMPSW-PTEA 56 Query: 69 TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 +++ AF++++R S+ R +S ++ F ++L ++ I + +L + KK LP A Sbjct: 57 SDVDAFLARQRDLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTA 116 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 L +++ N LL + + R+ AIL LY G+R+SE ++L Q++ DD + Sbjct: 117 LTQEEV-----NKLLEQPDVKRKLGLRDRAILETLYATGMRVSELINLELQDLHDDLGLV 171 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI---QLPLFRGIRGKPLNPGVFQR 245 R+ GKG K R++P+ P I +Y L L++ +F RGK L + Sbjct: 172 RVIGKGSKERLIPISPVALNWIKKYEKEVRDPLILHVGQNDEHIFLNSRGKMLTRQAIWQ 231 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 I++ + G+ T HTLRH+FATHLL NG DLR +Q ILGH +STTQIYTN++ K+ Sbjct: 232 MIKKYCQMAGIVKDVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKH 291 Query: 306 GGDWMMEIYDQTHPSI 321 ++++Y +THP + Sbjct: 292 ----ILQVYQKTHPRL 303 >gi|212639574|ref|YP_002316094.1| site-specific tyrosine recombinase XerC [Anoxybacillus flavithermus WK1] gi|254799325|sp|B7GGC7|XERC_ANOFW RecName: Full=Tyrosine recombinase xerC gi|212561054|gb|ACJ34109.1| Site-specific recombinase XerD [Anoxybacillus flavithermus WK1] Length = 300 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 98/304 (32%), Positives = 162/304 (53%), Gaps = 21/304 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +++ L+IE+ S+ T+ Y+ D +F F+ E+ I+ ++Q+SY+++R F+++ Sbjct: 11 FIEYLQIEKNYSEYTIACYKHDIGEFFEFM-----EREQIKQLQQVSYSDVRLFLTELHQ 65 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL--NEKQALTLV 138 +K RS+ R +S ++SF K+L + KI +E+ KK +P L +E + L +V Sbjct: 66 RKQSSRSIARKMSSLRSFYKFLLREKIVSENPFALASLPKKEQKIPHFLYPDELEQLFVV 125 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 +++ I RN A++ LLY G+R+SE ++ +I T+ I GKG+K R Sbjct: 126 NDL-------NTAIGQRNQAMIELLYATGIRVSECCNIRLSHIDFSVCTILISGKGNKQR 178 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLG 255 VP ++A+ Y L + P LF RG L P + + + Sbjct: 179 YVPFGTYAKEALERYIQDGRQQLASKAKTPTDVLFLNARGGALTPRGVRHILNDIVERAA 238 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 L L + HT RH+FATHLL+ G DLRS+Q +LGH LS+TQ+YT+V D + +Y Sbjct: 239 LSLKVSPHTFRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTK----DHLRYVYL 294 Query: 316 QTHP 319 +HP Sbjct: 295 HSHP 298 >gi|229815095|ref|ZP_04445432.1| hypothetical protein COLINT_02137 [Collinsella intestinalis DSM 13280] gi|229809325|gb|EEP45090.1| hypothetical protein COLINT_02137 [Collinsella intestinalis DSM 13280] Length = 333 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 97/312 (31%), Positives = 162/312 (51%), Gaps = 20/312 (6%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 EL + R +L +L +ER L+ T+ +YE D R +L FL + IR+ ++ Sbjct: 35 ELERCRGEYLNHLTVERNLAANTIAAYERDLRAYLAFLGERGTRRPD-DVIRR----DVE 89 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F++ +R D S+ R+LS +K F +++ + +++ + +R K + LP ++ + Sbjct: 90 DFVAAKRADHAADASVNRALSAVKGFHRFMVREGLSSVNPTATLRVPKMGDHLPDVISIE 149 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 A L+D T+ R+ A+L +LYGCGLR SE L + D+ +R+ G Sbjct: 150 AAERLLDQDFPATA-----AGMRDRAVLEVLYGCGLRASELCGLDVNEVYLDEGFVRVMG 204 Query: 193 KGDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 KG K R+VPL+ + R+ + Y +L + + +F +RG L+ Sbjct: 205 KGSKERLVPLVGTARRVLGTYLAEARSELFSHTRSASASAAVFLNMRGTRLSRQSVHAIC 264 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 + R +G+ HTLRHSFATH+L+ G DLR++Q ILGH ++TTQIYT+++ Sbjct: 265 ERYGRMVGID-GLHPHTLRHSFATHMLAGGADLRALQEILGHADIATTQIYTHIDRTQ-- 321 Query: 308 DWMMEIYDQTHP 319 + E+Y HP Sbjct: 322 --LREVYLAAHP 331 >gi|194016964|ref|ZP_03055577.1| tyrosine recombinase XerD [Bacillus pumilus ATCC 7061] gi|194011570|gb|EDW21139.1| tyrosine recombinase XerD [Bacillus pumilus ATCC 7061] Length = 296 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 105/308 (34%), Positives = 163/308 (52%), Gaps = 28/308 (9%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +++ + +ERGLS+ T+ SY+ D + +L FL T E++T I+ ++ I ++ K + Sbjct: 7 DFIHFMTVERGLSENTIVSYKRDLQNYLSFLM--THEQLT--DIKDVTRLHIIHYLKKLK 62 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + ++ R LS I+SF ++L + K+TT+ N+ K LP+ L+ + L+D Sbjct: 63 EEGKSSKTSVRHLSSIRSFHQFLLREKVTTDDPSWNIETQKTERKLPKVLSLGEVEKLLD 122 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 HT D R+ A+L LLY G+R+SE L LT ++ +R GKG K RI Sbjct: 123 TPNQHTP-----FDYRDKAMLELLYATGIRVSEMLDLTLADVHLTMGFIRCFGKGRKERI 177 Query: 200 VPLLPSVRKAILEYYDLC--------PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 VP+ + AI EY + P D LF GK ++ F + +++ Sbjct: 178 VPIGEAAASAIEEYLEKGRSKLLKKQPAD-------ALFLNHHGKKMSRQGFWKNLKKRA 230 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 G+ T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V + Sbjct: 231 LEAGIQKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTR----LK 286 Query: 312 EIYDQTHP 319 ++Y + HP Sbjct: 287 DVYHKFHP 294 >gi|221135227|ref|ZP_03561530.1| site-specific tyrosine recombinase XerD [Glaciecola sp. HTCC2999] Length = 303 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 101/299 (33%), Positives = 160/299 (53%), Gaps = 13/299 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ L +E+GLS TL +Y+ D RQ FL T++ + ++ T+IRA++S R+ Sbjct: 16 FLEVLYLEKGLSDNTLSAYQTDLRQLCRFL---TQQDAAFSLV-DITDTDIRAYLSHRQA 71 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS R+LS +K+F+KY KI + + +++ K + SLP +L E Q Sbjct: 72 NNVSARSTARALSSLKTFIKYCLSEKIRDDDPLRHIKPPKVAVSLPDSLTEAQV-----E 126 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LL + R+ A+L +LY GLR++E + L + Q +R+ GKG+K R+V Sbjct: 127 SLLAAPDTALAVGQRDKAMLEVLYATGLRVTELVGLRLDQMSLLQGVVRVIGKGNKERLV 186 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 PL +A+ + +L + +F RG + F I+ G+ + Sbjct: 187 PLGEPAIEALTLFLQQGRHELLKHSSDVVFPSTRGTQMTRQTFWHRIKHYAMVAGIQVHL 246 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V S+ + I + HP Sbjct: 247 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVASER----LTHIIESHHP 301 >gi|52080868|ref|YP_079659.1| site-specific tyrosine recombinase XerD [Bacillus licheniformis ATCC 14580] gi|52786240|ref|YP_092069.1| site-specific tyrosine recombinase XerD [Bacillus licheniformis ATCC 14580] gi|319645175|ref|ZP_07999408.1| RipX protein [Bacillus sp. BT1B_CT2] gi|52004079|gb|AAU24021.1| site-specific integrase/recombinase [Bacillus licheniformis ATCC 14580] gi|52348742|gb|AAU41376.1| RipX [Bacillus licheniformis ATCC 14580] gi|317392984|gb|EFV73778.1| RipX protein [Bacillus sp. BT1B_CT2] Length = 296 Score = 156 bits (394), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 99/302 (32%), Positives = 162/302 (53%), Gaps = 14/302 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++++ +ERGLS T+ SYE D + A Y EE+ + + Q++ I F+ Sbjct: 6 KDFIHYAVVERGLSHNTVVSYERDLNSY----AAYLEEQEQLSSFDQVTRLHIIQFLKHL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + +++ R L+ I+SF ++L + K+T + +++ + K +LP+ L+ ++ TL+ Sbjct: 62 KDAGKSGKTVARHLASIRSFHQFLLREKVTAQDPSVHIESQKTERTLPKVLSLQEVETLL 121 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D L T R+ A+L LLY G+R+SE ++L ++ +R GKG K R Sbjct: 122 DTPKL-----TGPFGYRDKAMLELLYATGIRVSEMIALKLSDVHLSMGFIRCFGKGRKER 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 IVPL + A+ EY L N + LF G+ ++ F + ++++ G+ Sbjct: 177 IVPLGEAASHAVGEYLSKARGKLLKKNTEDALFLNHHGRQMSRQGFWKNLKKIALEAGIN 236 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V + ++Y Q Sbjct: 237 KELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTR----LKDVYRQY 292 Query: 318 HP 319 HP Sbjct: 293 HP 294 >gi|314939481|ref|ZP_07846715.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a04] gi|314941112|ref|ZP_07848010.1| tyrosine recombinase XerD [Enterococcus faecium TX0133C] gi|314948724|ref|ZP_07852096.1| tyrosine recombinase XerD [Enterococcus faecium TX0082] gi|314951697|ref|ZP_07854740.1| tyrosine recombinase XerD [Enterococcus faecium TX0133A] gi|314993956|ref|ZP_07859283.1| tyrosine recombinase XerD [Enterococcus faecium TX0133B] gi|314997520|ref|ZP_07862465.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a01] gi|313588431|gb|EFR67276.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a01] gi|313591558|gb|EFR70403.1| tyrosine recombinase XerD [Enterococcus faecium TX0133B] gi|313596161|gb|EFR75006.1| tyrosine recombinase XerD [Enterococcus faecium TX0133A] gi|313600113|gb|EFR78956.1| tyrosine recombinase XerD [Enterococcus faecium TX0133C] gi|313641283|gb|EFS05863.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a04] gi|313644790|gb|EFS09370.1| tyrosine recombinase XerD [Enterococcus faecium TX0082] Length = 300 Score = 155 bits (393), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 108/308 (35%), Positives = 167/308 (54%), Gaps = 16/308 (5%) Query: 14 LLKERQN-WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 ++KE+ N +L L IERGLS T QSYE D Q+L FL E+KI + + + + Sbjct: 5 IMKEQINDYLHYLNIERGLSANTRQSYERDLEQYLHFLQ---EQKIA--SWQDVDRFLVI 59 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F+ K +K ++ R +S ++ F ++L++ +IT + ++ KK+ LP L Sbjct: 60 RFLEKLHEEKKATATVTRMISSLRRFHQFLRQERITDHDPMQHIDTPKKAQKLPSTLT-- 117 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 LT V+ L+ TK + R+ AIL ++Y G+R+SE + L ++ ++ G Sbjct: 118 --LTEVEK-LIEAPDTTKTLGIRDRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVG 174 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 KGDK RI+PL + + Y D P + ++ +F GK L+ + ++QL Sbjct: 175 KGDKERIIPLGDYAIQWLERYLDEARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLV 234 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 R G+ T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT++ K M Sbjct: 235 REAGIYKEVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR----MT 290 Query: 312 EIYDQTHP 319 ++Y Q P Sbjct: 291 DVYKQHFP 298 >gi|119503715|ref|ZP_01625797.1| site-specific tyrosine recombinase XerC [marine gamma proteobacterium HTCC2080] gi|119460223|gb|EAW41316.1| site-specific tyrosine recombinase XerC [marine gamma proteobacterium HTCC2080] Length = 304 Score = 155 bits (393), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 94/299 (31%), Positives = 169/299 (56%), Gaps = 16/299 (5%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 R +S+ TL+ Y D R+F+ F A ++ T ++R+ +++R ++S+ Q + S+ Sbjct: 20 RQVSRHTLEGYGRDIRRFVSFCAVSNKQSAT--SVRE---SDVRNWVSQLHRQGLSPTSI 74 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 +R+LS ++S ++L +R +T + L ++ K+ +LP+ L+ N L E Sbjct: 75 QRALSSVRSLYRFLSERDVTLGNPALGVQAPKRPRNLPKTLDADSV-----NHLFQWQPE 129 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 T +D R+ AI LLY GLR+SE +S ++ ++ + + GKG K R +P+ Sbjct: 130 TT-LDFRDMAIAELLYSSGLRLSELVSANINDLEFNERMITVTGKGRKTRTLPVGGPALT 188 Query: 209 AILEYYDLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 A+ ++ L P + ++ PLF RG ++P Q ++++ R+ LP H LRH Sbjct: 189 AVTKWLSLRPLGNEDVGPASPLFVSARGTRISPRSVQLRLQRMARFSALPGKLHPHMLRH 248 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326 SFA+H+L + GDLR++Q +LGH +STTQIYT+++ ++ + ++YD HP +K+K Sbjct: 249 SFASHMLESSGDLRAVQELLGHSDISTTQIYTHLDFQH----LSKVYDAAHPRARRKNK 303 >gi|187476668|ref|YP_784691.1| site-specific tyrosine recombinase XerC [Bordetella avium 197N] gi|115421254|emb|CAJ47759.1| tyrosine recombinase [Bordetella avium 197N] Length = 325 Score = 155 bits (392), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 101/326 (30%), Positives = 167/326 (51%), Gaps = 28/326 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++WLQ+L+ +R S TL +Y D A T+ + +Q LS + IR I++ Sbjct: 9 EDWLQHLQTQRRYSSHTLAAYRHDLESLA---ALATQAGLALQ---DLSVSHIRQQIARL 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q +G RSL R L+ + F ++ + + +R K +LP+AL+ QA ++ Sbjct: 63 HAQGLGPRSLARRLAAWRGFYQWWAPHIGLARNPVAGVRAPKAPRALPKALSVDQAQAML 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL-----------TPQNIMD-DQS 186 D+ S T + R+ AI LLY GLR+SE +SL P ++ ++ Sbjct: 123 DHAPAQLS--TDPVSLRDHAISELLYSSGLRLSELVSLDTHYHRHTGSEEPAGWLNRAEA 180 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI----QLPLFRGIRGKPLNPGV 242 + + GKG K RIVP+ + A+ ++ P L+ LF G RG ++P V Sbjct: 181 EVVVLGKGGKRRIVPVGSAALAALDKWLQARPTLLSAATPAADSYALFLGARGARISPRV 240 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 Q + +L + G+P H LRHSFA+H+L + DLR++Q +LGH ++TTQ+YT ++ Sbjct: 241 VQLQLARLAQQAGVPAHVHPHVLRHSFASHVLQSAQDLRAVQELLGHANIATTQVYTRLD 300 Query: 303 SKNGGDWMMEIYDQTHPSITQKDKKN 328 ++ + ++YDQ HP +K + N Sbjct: 301 FQH----LAKVYDQAHPRANRKPEDN 322 >gi|262369523|ref|ZP_06062851.1| site-specific tyrosine recombinase [Acinetobacter johnsonii SH046] gi|262315591|gb|EEY96630.1| site-specific tyrosine recombinase [Acinetobacter johnsonii SH046] Length = 308 Score = 155 bits (392), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 103/320 (32%), Positives = 177/320 (55%), Gaps = 16/320 (5%) Query: 10 VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69 ++FE ++ WL+ EI+ S TLQ+YE D FL+F ++K+ + + T Sbjct: 1 MTFEPMQLLAMWLKQREIQNQ-SAHTLQAYERDVSDFLLFC---EQKKLELGDV---EAT 53 Query: 70 EIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 ++R FI+++ Q++ SL+R LS I+ F+K+ ++ + + + + +K LP Sbjct: 54 DLREFIAQKVEYQQLSSSSLQRMLSSIRQFMKWAEQGQHLAFNPADDFQLKRKPRPLPGL 113 Query: 129 LNEKQALTLVDNVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 ++ + ++D L E + W R+ A+L LLY GLR++E L ++I ++ Sbjct: 114 VDIETINQILDQALPEKEVEQQMWY--RDKALLELLYSSGLRLAEVQGLRIKDIDFNRQL 171 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 LRI GKG+K R+VP + A++++ + P ++ + +F +G PL + Sbjct: 172 LRITGKGNKTRVVPFGSKAKDAVMKWLSIYPLWNGDFVPDAQVFITQKGNPLGMRQIENR 231 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 ++ + G+ + H LRH FA+H+LSN GDLR++Q +LGH LSTTQIYT+V+ Sbjct: 232 VKFQAQRAGVNIDLHPHLLRHCFASHMLSNSGDLRAVQEMLGHSNLSTTQIYTHVDF--- 288 Query: 307 GDWMMEIYDQTHPSITQKDK 326 D + ++YDQTHP QK K Sbjct: 289 -DRLAQVYDQTHPRAQQKVK 307 >gi|88813056|ref|ZP_01128298.1| Tyrosine recombinase XerC [Nitrococcus mobilis Nb-231] gi|88789689|gb|EAR20814.1| Tyrosine recombinase XerC [Nitrococcus mobilis Nb-231] Length = 301 Score = 155 bits (392), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 102/311 (32%), Positives = 164/311 (52%), Gaps = 19/311 (6%) Query: 21 WLQ----NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 WL+ +L ER L++LT Q Y D L LA Y + + Q++ T IR FI+ Sbjct: 4 WLERFDAHLRTERRLARLTRQHYRRD----LETLAGYCG-ALGLSGWEQVNATHIRRFIA 58 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 R + RSL+R LS I++ +YL + +T + +R K LP AL+ + Sbjct: 59 WRHRSGLAGRSLQRMLSSIRTLYRYLIREGVTRSNPGTGVRAPKTRQRLPEALDVDETAH 118 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L+D + + R+ A+ LLY CGLR++E L+ + ++ LR+ GKG K Sbjct: 119 LLDE-----PPASDPLRVRDVAMFELLYSCGLRLAELAGLSTDAVTGREAELRVTGKGCK 173 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +R+VP+ R A+L + L P L + + LF G+ L+ Q + +L + GL Sbjct: 174 MRVVPIGRQARCALLRWLTLRP-GLARSDEPALFVARHGRRLSHRSIQVRLERLAQRRGL 232 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 H LRHSFA+HLL + GDLR++Q +LGH + TTQ+YT+++ ++ + ++YD Sbjct: 233 HRRVHPHMLRHSFASHLLESSGDLRAVQELLGHAHIGTTQVYTHLDFQH----LTKVYDA 288 Query: 317 THPSITQKDKK 327 HP +K ++ Sbjct: 289 AHPRARRKPRE 299 >gi|257877980|ref|ZP_05657633.1| phage integrase [Enterococcus faecium 1,230,933] gi|257881234|ref|ZP_05660887.1| phage integrase [Enterococcus faecium 1,231,502] gi|257884899|ref|ZP_05664552.1| phage integrase [Enterococcus faecium 1,231,501] gi|257889821|ref|ZP_05669474.1| phage integrase [Enterococcus faecium 1,231,410] gi|258616535|ref|ZP_05714305.1| integrase/recombinase XerD, putative [Enterococcus faecium DO] gi|260559031|ref|ZP_05831217.1| phage integrase [Enterococcus faecium C68] gi|261207565|ref|ZP_05922250.1| phage integrase [Enterococcus faecium TC 6] gi|289565077|ref|ZP_06445530.1| tyrosine recombinase XerD [Enterococcus faecium D344SRF] gi|293556722|ref|ZP_06675285.1| tyrosine recombinase XerD [Enterococcus faecium E1039] gi|293563380|ref|ZP_06677829.1| tyrosine recombinase XerD [Enterococcus faecium E1162] gi|293568038|ref|ZP_06679376.1| tyrosine recombinase XerD [Enterococcus faecium E1071] gi|294614864|ref|ZP_06694759.1| tyrosine recombinase XerD [Enterococcus faecium E1636] gi|294618694|ref|ZP_06698228.1| tyrosine recombinase XerD [Enterococcus faecium E1679] gi|294622985|ref|ZP_06701875.1| tyrosine recombinase XerD [Enterococcus faecium U0317] gi|257812208|gb|EEV40966.1| phage integrase [Enterococcus faecium 1,230,933] gi|257816892|gb|EEV44220.1| phage integrase [Enterococcus faecium 1,231,502] gi|257820737|gb|EEV47885.1| phage integrase [Enterococcus faecium 1,231,501] gi|257826181|gb|EEV52807.1| phage integrase [Enterococcus faecium 1,231,410] gi|260074788|gb|EEW63104.1| phage integrase [Enterococcus faecium C68] gi|260077948|gb|EEW65654.1| phage integrase [Enterococcus faecium TC 6] gi|289163084|gb|EFD10931.1| tyrosine recombinase XerD [Enterococcus faecium D344SRF] gi|291589259|gb|EFF21069.1| tyrosine recombinase XerD [Enterococcus faecium E1071] gi|291592326|gb|EFF23940.1| tyrosine recombinase XerD [Enterococcus faecium E1636] gi|291595077|gb|EFF26420.1| tyrosine recombinase XerD [Enterococcus faecium E1679] gi|291597613|gb|EFF28774.1| tyrosine recombinase XerD [Enterococcus faecium U0317] gi|291601054|gb|EFF31343.1| tyrosine recombinase XerD [Enterococcus faecium E1039] gi|291604641|gb|EFF34126.1| tyrosine recombinase XerD [Enterococcus faecium E1162] Length = 295 Score = 155 bits (391), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 108/307 (35%), Positives = 166/307 (54%), Gaps = 16/307 (5%) Query: 15 LKERQN-WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 +KE+ N +L L IERGLS T QSYE D Q+L FL E+KI + + + + Sbjct: 1 MKEQINDYLHYLNIERGLSANTRQSYERDLEQYLHFLQ---EQKIA--SWQDVDRFLVIR 55 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 F+ K +K ++ R +S ++ F ++L++ +IT + ++ KK+ LP L Sbjct: 56 FLEKLHEEKKATATVTRMISSLRRFHQFLRQERITDHDPMQHIDTPKKAQKLPSTLT--- 112 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 LT V+ L+ TK + R+ AIL ++Y G+R+SE + L ++ ++ GK Sbjct: 113 -LTEVEK-LIEAPDTTKTLGIRDRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGK 170 Query: 194 GDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 GDK RI+PL + + Y D P + ++ +F GK L+ + ++QL R Sbjct: 171 GDKERIIPLGDYAIQWLERYLDEARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVR 230 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 G+ T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT++ K M + Sbjct: 231 EAGIYKEVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR----MTD 286 Query: 313 IYDQTHP 319 +Y Q P Sbjct: 287 VYKQHFP 293 >gi|28493419|ref|NP_787580.1| integrase/recombinase [Tropheryma whipplei str. Twist] gi|28476460|gb|AAO44549.1| integrase/recombinase [Tropheryma whipplei str. Twist] Length = 316 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 105/307 (34%), Positives = 170/307 (55%), Gaps = 18/307 (5%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 L++E +L+N+ RG S T ++Y D F ++ + + + ++++R +S ++R+ Sbjct: 25 LIREFIIYLENV---RGYSSHTCRAYYRDLMCFGEYIITH-DSRENVKSLRDVSIQDLRS 80 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 ++ + + RS++R++S +KSF ++ RKIT ++ +R K ++ LP L+EK+ Sbjct: 81 WLYSQSHKSA--RSIRRAVSSLKSFFRWAYDRKITAQNTAAALRAPKSTSQLPSVLSEKR 138 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 ++ N SH I RN+AI LLY +R+SE +SL +I D T+R+ GK Sbjct: 139 IAQILGNF----SHTVPVIQLRNTAIFELLYASAIRVSELVSLDLDSIDHDLCTVRVDGK 194 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 K R+V A+ Y ++ L+ LF G RG+ +NP V R + +L Sbjct: 195 NGKQRVVLFGKPASHALDLYLNMRHTLLSDRSSKALFLGSRGRRINPRVVYRLVSEL--- 251 Query: 254 LGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 L +P H LRHS ATH+L NG DLRS+Q ILGH LSTTQIYT+V+ + ++ Sbjct: 252 LEMPKGPRGPHVLRHSAATHMLDNGADLRSLQEILGHSSLSTTQIYTHVSLER----LIS 307 Query: 313 IYDQTHP 319 Y+Q HP Sbjct: 308 SYNQAHP 314 >gi|28572470|ref|NP_789250.1| DNA recombinase [Tropheryma whipplei TW08/27] gi|28410602|emb|CAD66988.1| putative DNA recombinase [Tropheryma whipplei TW08/27] Length = 306 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 105/307 (34%), Positives = 170/307 (55%), Gaps = 18/307 (5%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 L++E +L+N+ RG S T ++Y D F ++ + + + ++++R +S ++R+ Sbjct: 15 LIREFIIYLENV---RGYSSHTCRAYYRDLMCFGEYIITH-DSRENVKSLRDVSIQDLRS 70 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 ++ + + RS++R++S +KSF ++ RKIT ++ +R K ++ LP L+EK+ Sbjct: 71 WLYSQSHKSA--RSIRRAVSSLKSFFRWAYDRKITAQNTAAALRAPKSTSQLPSVLSEKR 128 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 ++ N SH I RN+AI LLY +R+SE +SL +I D T+R+ GK Sbjct: 129 IAQILGNF----SHTVPVIQLRNTAIFELLYASAIRVSELVSLDLDSIDHDLCTVRVDGK 184 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 K R+V A+ Y ++ L+ LF G RG+ +NP V R + +L Sbjct: 185 NGKQRVVLFGKPASHALDLYLNMRHTLLSDRSSKALFLGSRGRRINPRVVYRLVSEL--- 241 Query: 254 LGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 L +P H LRHS ATH+L NG DLRS+Q ILGH LSTTQIYT+V+ + ++ Sbjct: 242 LEMPKGPRGPHVLRHSAATHMLDNGADLRSLQEILGHSSLSTTQIYTHVSLER----LIS 297 Query: 313 IYDQTHP 319 Y+Q HP Sbjct: 298 SYNQAHP 304 >gi|311030726|ref|ZP_07708816.1| site-specific tyrosine recombinase XerD [Bacillus sp. m3-13] Length = 296 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 96/302 (31%), Positives = 163/302 (53%), Gaps = 14/302 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++++ L +E+GL+ T+ SYE D + +L++L+ E I ++ +S + I F+ Sbjct: 6 KDFIHFLVVEKGLASNTVVSYERDLKSYLLYLSKVEE----ISSLEAVSRSTIIQFLKFL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 +++ R ++ I+SF ++L + K+TT+ +++ K+ LP+ ++ ++ L+ Sbjct: 62 TENGKSSKTIARHIASIRSFHQFLLREKVTTQDPTVHIDRPKQEQKLPQVMSVEEVQALL 121 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + +K R+ A+L LLY G+R+SE +SL ++ +R GKG+K R Sbjct: 122 D-----SPDTSKVFGMRDKAMLELLYATGMRVSELISLNLSDVHLTMGFVRCIGKGNKER 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 I+PL + AI Y + L LF + G L F + +++L + G+ Sbjct: 177 IIPLGTMAQNAITNYIEESRSQLLKKKTTDALFVNLYGNRLTRQGFWKILKKLTKEAGIE 236 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V M ++Y Sbjct: 237 KELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTR----MKDVYSMF 292 Query: 318 HP 319 HP Sbjct: 293 HP 294 >gi|257898863|ref|ZP_05678516.1| phage integrase [Enterococcus faecium Com15] gi|293570233|ref|ZP_06681302.1| tyrosine recombinase XerD [Enterococcus faecium E980] gi|257836775|gb|EEV61849.1| phage integrase [Enterococcus faecium Com15] gi|291609640|gb|EFF38901.1| tyrosine recombinase XerD [Enterococcus faecium E980] Length = 295 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 103/307 (33%), Positives = 163/307 (53%), Gaps = 16/307 (5%) Query: 15 LKERQN-WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 +KE+ N +L L IERGLS T QSYE D Q+L FL E+ + + + + + Sbjct: 1 MKEQINDYLHYLNIERGLSANTRQSYERDLEQYLHFL-----EEQKVASWQDVDRFLVIR 55 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 F+ K +K ++ R +S ++ F ++L++ +IT + ++ KK+ LP L + Sbjct: 56 FLEKMHEEKKATATVTRMISSLRRFHQFLRQERITDHDPMQHIDTPKKAQKLPSTLTLAE 115 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L++ TK + R+ AIL ++Y G+R+SE + L ++ ++ GK Sbjct: 116 VEKLIE-----APDTTKTLGIRDRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGK 170 Query: 194 GDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 GDK RI+PL + + Y D P + ++ +F GK L+ + ++QL R Sbjct: 171 GDKERIIPLGDYAIQWLERYLDEARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVR 230 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 G+ T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT++ K M + Sbjct: 231 EAGIYKEVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR----MTD 286 Query: 313 IYDQTHP 319 +Y Q P Sbjct: 287 VYKQHFP 293 >gi|311068948|ref|YP_003973871.1| site-specific tyrosine recombinase XerD [Bacillus atrophaeus 1942] gi|310869465|gb|ADP32940.1| site-specific tyrosine recombinase XerD [Bacillus atrophaeus 1942] Length = 296 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 97/302 (32%), Positives = 161/302 (53%), Gaps = 14/302 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++++ + +ERGLS+ T+ SYE D + + +FL E + + + +++ I ++ Sbjct: 6 KDFIHYVMVERGLSQNTMMSYERDLKSYSLFLT----ETLQVTSWNEVTRIHIIQYLKHL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + ++ R L+ I+SF ++L + K+T + +++ K +LP+ L+ K+ L+ Sbjct: 62 KDSGKSGKTSARHLASIRSFHQFLLREKVTDKDPSVHIETQKTERTLPKVLSLKEVELLL 121 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D L T R+ A+L LLY G+R+SE + L ++ +R GKG K R Sbjct: 122 DTPKL-----TSPFGYRDKAMLELLYATGIRVSEMIDLKTSDVHLSMGFVRCFGKGRKER 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 IVP+ + AI EY L N+ LF GK ++ F + ++++ G+ Sbjct: 177 IVPIGETAAHAIEEYLAKARGKLLKKNVSDALFLNHHGKQISRQGFWKNLKKIALEAGIK 236 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V + ++Y Q Sbjct: 237 KELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTR----LKDVYKQY 292 Query: 318 HP 319 HP Sbjct: 293 HP 294 >gi|319651425|ref|ZP_08005554.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2] gi|317396956|gb|EFV77665.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2] Length = 297 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 99/303 (32%), Positives = 167/303 (55%), Gaps = 15/303 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++++ L +E+GL+K T+ SYE D + +L +L +EEKI+ ++ + T+I F+ Sbjct: 6 RDFIHYLLVEKGLAKNTIVSYERDLKSYLKYLK--SEEKIS--SLESVQRTQIVQFLGFL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + Q ++L R ++ I++F ++L + K +++ + SLP+ LN ++ TL+ Sbjct: 62 KKQGKSSKTLARHIASIRAFHQFLLREKAVGHDPSVHIETPQMERSLPKVLNMQEVETLL 121 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + R+ A+L LLY G+R+SE + L ++ +R GKG+K R Sbjct: 122 DFPEI-----KDHFGLRDKAMLELLYATGIRVSELIGLNIGDVHLTMGFVRCIGKGNKER 176 Query: 199 IVPLLPSVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 IVP+ + +A+ +Y + F + LF GK L+ F + +++L + G+ Sbjct: 177 IVPIGKTASEALEKYLNEGRGKFAPKKHKDEALFLNHHGKRLSRQGFWKILKRLAQEAGI 236 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V + ++Y Q Sbjct: 237 EKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTR----LKDVYSQ 292 Query: 317 THP 319 HP Sbjct: 293 YHP 295 >gi|261419412|ref|YP_003253094.1| site-specific tyrosine recombinase XerC [Geobacillus sp. Y412MC61] gi|297530613|ref|YP_003671888.1| tyrosine recombinase XerC [Geobacillus sp. C56-T3] gi|319766227|ref|YP_004131728.1| tyrosine recombinase XerC [Geobacillus sp. Y412MC52] gi|261375869|gb|ACX78612.1| tyrosine recombinase XerC [Geobacillus sp. Y412MC61] gi|297253865|gb|ADI27311.1| tyrosine recombinase XerC [Geobacillus sp. C56-T3] gi|317111093|gb|ADU93585.1| tyrosine recombinase XerC [Geobacillus sp. Y412MC52] Length = 300 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 102/308 (33%), Positives = 161/308 (52%), Gaps = 25/308 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +++ L+IE+ S+ T+ Y D QF F+ ++ I + ++SY+++R +++K Sbjct: 9 QLFMEYLQIEKNYSQYTIVCYRRDIEQFFRFM-----DEEGIGALNEVSYSDVRLYLTKL 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL--NEKQALT 136 Q++ RS+ R +S ++SF K+L + E+ KK +P L E +AL Sbjct: 64 YEQQLASRSVARKISSLRSFYKFLLREGRVAENPFALATLPKKEQKIPNFLYPKELEALF 123 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 LV++ E + RN+A+L LLY G R+SE + ++ T+ I GKG+K Sbjct: 124 LVND-------ENTALGQRNAALLELLYATGARVSECCHIQLSDVDFVAETVLIHGKGNK 176 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLR 251 R VP R+A+ Y +L +LP LF RG PL P + + ++ Sbjct: 177 QRYVPFGRPAREALERYIHRGRRELTR--KLPADHRYLFVNARGNPLTPRGVRHILDRIV 234 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 L + + H LRH+FATHLL+ G DLRS+Q +LGH LS+TQ+YT+V D + Sbjct: 235 EAAALTQNISPHVLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTK----DRLR 290 Query: 312 EIYDQTHP 319 IY Q HP Sbjct: 291 HIYLQAHP 298 >gi|227551150|ref|ZP_03981199.1| site-specific DNA tyrosine recombinase [Enterococcus faecium TX1330] gi|227179712|gb|EEI60684.1| site-specific DNA tyrosine recombinase [Enterococcus faecium TX1330] Length = 300 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 102/308 (33%), Positives = 164/308 (53%), Gaps = 16/308 (5%) Query: 14 LLKERQN-WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 ++KE+ N +L L IERGLS T QSYE D Q+L FL E+ + + + + + Sbjct: 5 IMKEQINDYLHYLNIERGLSANTRQSYERDLEQYLHFL-----EEQKVASWQDVDRFLVI 59 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F+ K +K ++ R +S ++ F ++L++ ++T + ++ KK+ LP L Sbjct: 60 RFLEKLHEEKKATATVTRMISSLRRFHQFLRQERVTDHDPMQHIDTPKKAQKLPSTLTLA 119 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + L++ TK + R+ AIL ++Y G+R+SE + L ++ ++ G Sbjct: 120 EVEKLIE-----APDTTKTLGIRDRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVG 174 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 KGDK RI+PL + + Y D P + ++ +F GK L+ + ++QL Sbjct: 175 KGDKERIIPLGDYAIQWLERYLDEARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLV 234 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 R G+ T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT++ K M Sbjct: 235 REAGIYKEVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR----MT 290 Query: 312 EIYDQTHP 319 ++Y Q P Sbjct: 291 DVYKQHFP 298 >gi|15614092|ref|NP_242395.1| integrase/recombinase [Bacillus halodurans C-125] gi|34223074|sp|Q9KCP0|XERD_BACHD RecName: Full=Tyrosine recombinase xerD gi|10174146|dbj|BAB05248.1| integrase/recombinase [Bacillus halodurans C-125] Length = 299 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 100/302 (33%), Positives = 160/302 (52%), Gaps = 14/302 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +L ++ERGLS T+QSY D +Q++ Y E I++ R ++ I ++ Sbjct: 9 QQFLHFQKVERGLSNNTIQSYGRDLKQYIQ----YVERVEEIRSARNITRETILHYLYHL 64 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R Q + S+ R+++ I+SF ++L + K++ +++ K + LP+AL ++ Sbjct: 65 REQGRAETSIARAVAAIRSFHQFLLREKLSDSDPTVHVEIPKATKRLPKALTIEEV---- 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL++ RN A+L LLY G+R+SE + LT +I +R GKG+K R Sbjct: 121 -EALLNSPQGRDPFSLRNKAMLELLYATGMRVSELIGLTLSDIHLSMGFVRCLGKGNKER 179 Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 I+P+ +A+ Y L +F G+PL+ F + ++QL + + + Sbjct: 180 IIPIGQVATEAVESYLANGRGKLMKKQSHDHVFVNHHGRPLSRQGFWKMLKQLAKNVNID 239 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V M ++Y Sbjct: 240 KPLTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTR----MRDVYAHF 295 Query: 318 HP 319 HP Sbjct: 296 HP 297 >gi|297571163|ref|YP_003696937.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595] gi|296931510|gb|ADH92318.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595] Length = 313 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 105/319 (32%), Positives = 171/319 (53%), Gaps = 14/319 (4%) Query: 2 EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61 E ++ P FE + ER + + LE+ RGLS T ++Y + R L F+ ++++ T Sbjct: 6 ETDHFP--TQFEQILER--YQRELELRRGLSAHTCRAYLHEARSLLEFVCKHSDDPAT-- 59 Query: 62 TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121 ++ ++ ++R +++ + S+ R + I++F ++L K T +++ K Sbjct: 60 SLPEIDIRDMRLWLADNQQAGHSRASIARHSASIRTFTRWLFKNAYTAADPGTQLKSPKV 119 Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 SN LP L +QA L+ V + + + R++AI+ LLY +R+SE L+ T + Sbjct: 120 SNELPHVLTVEQARELL-RVAKERTADGNALAIRDAAIVELLYATAIRVSE-LTGTDVSD 177 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNP 240 + S LR+ GKGDK RIVP R A++ + D+ L N + LF G RGK ++P Sbjct: 178 VSPSSNLRVIGKGDKERIVPFGRPARNALMAWLDVRGTLLEKNPTEQALFVGARGKRIDP 237 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + + QL + GLP T H LRHS ATHLL G DLR++Q ILGH + TTQ YT+ Sbjct: 238 RTVRTLLTQLTKAAGLP-DITPHDLRHSAATHLLDGGSDLRTVQEILGHSSIGTTQRYTH 296 Query: 301 VNSKNGGDWMMEIYDQTHP 319 V+++ + + Q HP Sbjct: 297 VSAER----LRAAFGQAHP 311 >gi|295692872|ref|YP_003601482.1| tyrosine recombinase xerd [Lactobacillus crispatus ST1] gi|295030978|emb|CBL50457.1| Tyrosine recombinase xerD [Lactobacillus crispatus ST1] Length = 301 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 102/324 (31%), Positives = 172/324 (53%), Gaps = 26/324 (8%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 ME NNL + + ++L+ ++ERGLS T+ +Y D +F F+ E + Sbjct: 1 MEKNNLKDQID--------DYLRYSQVERGLSDNTINAYRQDLEEFRTFVE--NEGMASW 50 Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 T +++ AF++++R S+ R +S ++ F ++L ++ I + +L + K Sbjct: 51 PT----EASDVDAFLARQRDLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPK 106 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 K LP AL++ + N LL + + + R+ AIL LY G+R+SE ++L Q+ Sbjct: 107 KERRLPTALSQAEM-----NRLLEQPNTKRKLGIRDRAILETLYATGMRVSELINLELQD 161 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI---QLPLFRGIRGKP 237 + D+ +R+ GKG+K R++P+ P I +Y + L L + +F RGK Sbjct: 162 LHDNLGLVRVLGKGEKERLIPISPVALDWIKKYENEVRDPLILQVGKSDEHIFLNNRGKK 221 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + + I++ + + T HTLRH+FATHLL NG DLR +Q ILGH +STTQI Sbjct: 222 ITRQAIWQMIKKYCQMAAITKDVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQI 281 Query: 298 YTNVNSKNGGDWMMEIYDQTHPSI 321 YTN++ K ++ +Y +THP + Sbjct: 282 YTNLSQKQ----ILNVYQKTHPRL 301 >gi|227879087|ref|ZP_03996976.1| integrase-recombinase [Lactobacillus crispatus JV-V01] gi|256843076|ref|ZP_05548564.1| tyrosine recombinase XerD [Lactobacillus crispatus 125-2-CHN] gi|256850272|ref|ZP_05555701.1| integrase/recombinase [Lactobacillus crispatus MV-1A-US] gi|262046336|ref|ZP_06019298.1| tyrosine recombinase XerD [Lactobacillus crispatus MV-3A-US] gi|293379759|ref|ZP_06625891.1| tyrosine recombinase XerD [Lactobacillus crispatus 214-1] gi|312977261|ref|ZP_07789009.1| tyrosine recombinase XerD [Lactobacillus crispatus CTV-05] gi|227861328|gb|EEJ68958.1| integrase-recombinase [Lactobacillus crispatus JV-V01] gi|256614496|gb|EEU19697.1| tyrosine recombinase XerD [Lactobacillus crispatus 125-2-CHN] gi|256712909|gb|EEU27901.1| integrase/recombinase [Lactobacillus crispatus MV-1A-US] gi|260573207|gb|EEX29765.1| tyrosine recombinase XerD [Lactobacillus crispatus MV-3A-US] gi|290923668|gb|EFE00539.1| tyrosine recombinase XerD [Lactobacillus crispatus 214-1] gi|310895692|gb|EFQ44758.1| tyrosine recombinase XerD [Lactobacillus crispatus CTV-05] Length = 301 Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 98/305 (32%), Positives = 165/305 (54%), Gaps = 18/305 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L+ ++ERGLS T+ +Y D +F F+ E + T +++ AF++++R Sbjct: 12 DYLRYSQVERGLSDNTINAYRQDLEEFQTFVE--NEGMASWPT----EASDVDAFLARQR 65 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 S+ R +S ++ F ++L ++ I + +L + KK LP AL++ + Sbjct: 66 DLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALSQAEM----- 120 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 N LL + + + R+ AIL LY G+R+SE ++L Q++ DD +R+ GKG+K R+ Sbjct: 121 NRLLEQPNTKRKLGIRDRAILETLYATGMRVSELINLELQDLHDDLGLVRVLGKGEKERL 180 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNI---QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +P+ P I +Y + L L + +F RGK + + I++ + + Sbjct: 181 IPISPVALDWIKKYENEVRDPLILQVGKSDEHIFLNNRGKKITRQAIWQMIKKYCQMAAI 240 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 T HTLRH+FATHLL NG DLR +Q ILGH +STTQIYTN++ K ++ +Y + Sbjct: 241 TKDVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKQ----ILNVYQK 296 Query: 317 THPSI 321 THP + Sbjct: 297 THPRL 301 >gi|210634278|ref|ZP_03298051.1| hypothetical protein COLSTE_01973 [Collinsella stercoris DSM 13279] gi|210158880|gb|EEA89851.1| hypothetical protein COLSTE_01973 [Collinsella stercoris DSM 13279] Length = 302 Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 106/320 (33%), Positives = 160/320 (50%), Gaps = 35/320 (10%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 EL + + +L +L +ER LS T+ +Y D + FLA E +T ++ ++ Sbjct: 3 ELERCCREYLGHLSVERNLSPYTVAAYRRDLEAYRAFLA---ERGVTGPD--SVTRRDVE 57 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F++ RR D S+ R+LS +K ++L + I+T +R K + LP ++ Sbjct: 58 DFVAHRRETGAADASVNRALSAVKGLHRFLVREGISTTYPTSAIRTPKAAKHLPDVISID 117 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 QA L+D T+ AR+ A L +LYGCGLR+SE L +++ D+ L + G Sbjct: 118 QACALLDQPFPATA-----AGARDHAALEVLYGCGLRVSELTGLDVRDLHLDEEFLLVMG 172 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF-----QRYI 247 KG K R+ P+ S +A+ Y L L + L R ++P VF R Sbjct: 173 KGSKERLAPITGSALRALEAY-------LTLGARDELMGHARAAGVSPAVFLNARGTRLS 225 Query: 248 RQ-----LRRY---LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 RQ RY +G+ HTLRHSFATH+L+ G DLR +Q ILGH ++TTQIYT Sbjct: 226 RQSVHAICERYGRMVGIE-GLHPHTLRHSFATHMLAGGADLRVLQEILGHADIATTQIYT 284 Query: 300 NVNSKNGGDWMMEIYDQTHP 319 +V+ + E+Y HP Sbjct: 285 HVDQTQ----LREVYLAAHP 300 >gi|315640716|ref|ZP_07895818.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952] gi|315483471|gb|EFU73965.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952] Length = 310 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 109/324 (33%), Positives = 163/324 (50%), Gaps = 29/324 (8%) Query: 2 EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61 E N P I F+ + Q L +ERG S+ T +Y D QFL FL E+ + Sbjct: 8 EQENTPSIQWFD------EFSQYLIVERGYSEKTQAAYAEDFFQFLDFL-----EQSGSR 56 Query: 62 TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121 + Y ++R ++S Q+ S+ R ++ ++SF +YL KR + TE+ + KK Sbjct: 57 DFLAIDYRDVRIYLSFLNDQEYSRNSISRKVASLRSFYQYLLKRMVLTENPFAYVHLKKK 116 Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 + LPR E + L D+V T+ ++ RN A+L +LYGCGLR+SE ++T +I Sbjct: 117 NQKLPRFFYEDELQQLFDSV-----KGTEPLEQRNLALLEILYGCGLRVSECAAITLTSI 171 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRG 235 + L + GKG K RIVP KA+ Y L F + LF G Sbjct: 172 DWEHQILLVYGKGSKERIVPFNEHANKAMSHYIQNGRKELLTQFKKEHDY---LFVNHLG 228 Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 P+ + + QL + L H LRH+FATHLL+NG D+R++Q +LGH LSTT Sbjct: 229 SPVTATGIEYILNQLLKRSQLDSEIHPHKLRHTFATHLLNNGADMRTVQELLGHANLSTT 288 Query: 296 QIYTNVNSKNGGDWMMEIYDQTHP 319 QIY +V ++ + + Y + HP Sbjct: 289 QIYAHVTKES----LQKNYRKFHP 308 >gi|291612618|ref|YP_003522775.1| tyrosine recombinase XerC [Sideroxydans lithotrophicus ES-1] gi|291582730|gb|ADE10388.1| tyrosine recombinase XerC [Sideroxydans lithotrophicus ES-1] Length = 299 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 103/310 (33%), Positives = 159/310 (51%), Gaps = 27/310 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +L L ER S LT ++Y D R+ E + L IR +I++ Sbjct: 12 QGYLAYLNNERNYSPLTAENYARDIRRLF--------ELAGATPLPDLKSHHIRRYIAQL 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 +G RSL R LS + F YL + + + +R K +LP AL+ +A+ LV Sbjct: 64 HGSGLGGRSLARVLSAWRGFYGYLMRDHGCKSNPCVGLRAPKAPKTLPHALSPDEAVKLV 123 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + +L+ T +DAR+ A+ LLY GLR++E +SL P ++ +++R+ GKG+K R Sbjct: 124 E-MLVATP-----LDARDKAMFELLYSSGLRLAELVSLDPIDMDFADASVRVTGKGNKTR 177 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYL 254 IVPL A+ + + I P LF G G ++P Q +RQ Sbjct: 178 IVPLGSHAIDALKAW-----LAVRDQIAKPGETALFVGKNGARISPRTVQLQLRQRGITQ 232 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ H LRHSFATH+L + GDLR++Q +LGH +STTQ+YT+++ + ++ +IY Sbjct: 233 GIASGVHPHLLRHSFATHVLQSSGDLRAVQEMLGHASISTTQVYTHLDFQ----YLAKIY 288 Query: 315 DQTHPSITQK 324 D HP +K Sbjct: 289 DGAHPRAKKK 298 >gi|257887731|ref|ZP_05667384.1| phage integrase [Enterococcus faecium 1,141,733] gi|257896226|ref|ZP_05675879.1| phage integrase [Enterococcus faecium Com12] gi|293379533|ref|ZP_06625675.1| tyrosine recombinase XerD [Enterococcus faecium PC4.1] gi|257823785|gb|EEV50717.1| phage integrase [Enterococcus faecium 1,141,733] gi|257832791|gb|EEV59212.1| phage integrase [Enterococcus faecium Com12] gi|292641842|gb|EFF60010.1| tyrosine recombinase XerD [Enterococcus faecium PC4.1] Length = 295 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 102/307 (33%), Positives = 163/307 (53%), Gaps = 16/307 (5%) Query: 15 LKERQN-WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 +KE+ N +L L IERGLS T QSYE D Q+L FL E+ + + + + + Sbjct: 1 MKEQINDYLHYLNIERGLSANTRQSYERDLEQYLHFL-----EEQKVASWQDVDRFLVIR 55 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 F+ K +K ++ R +S ++ F ++L++ ++T + ++ KK+ LP L + Sbjct: 56 FLEKLHEEKKATATVTRMISSLRRFHQFLRQERVTDHDPMQHIDTPKKAQKLPSTLTLAE 115 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L++ TK + R+ AIL ++Y G+R+SE + L ++ ++ GK Sbjct: 116 VEKLIE-----APDTTKTLGIRDRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGK 170 Query: 194 GDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 GDK RI+PL + + Y D P + ++ +F GK L+ + ++QL R Sbjct: 171 GDKERIIPLGDYAIQWLERYLDEARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVR 230 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 G+ T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT++ K M + Sbjct: 231 EAGIYKEVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR----MTD 286 Query: 313 IYDQTHP 319 +Y Q P Sbjct: 287 VYKQHFP 293 >gi|117923766|ref|YP_864383.1| tyrosine recombinase XerC subunit [Magnetococcus sp. MC-1] gi|117607522|gb|ABK42977.1| tyrosine recombinase XerC subunit [Magnetococcus sp. MC-1] Length = 335 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 104/313 (33%), Positives = 159/313 (50%), Gaps = 16/313 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q + +L ER LS T + Y D F F A Y E +T + QL I AF+ + Sbjct: 7 QRFFDHLMQERRLSVHTEKGYRRDLEAFSAFYAEYEGEPLTPTKLAQLDGDHILAFLGRG 66 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + +++R ++ ++++ Y+++ + + + + + K LPRA + +Q L L+ Sbjct: 67 HREGLARTTMQRRMAALRAWFNYMQREGLVSGNPAAAVSSPKAPKRLPRAPSVEQTLNLL 126 Query: 139 DNVLLHT-SHETKWIDA---------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 D S E D R++A+L LLY GLRISEA +L ++ L Sbjct: 127 DKSTPRPLSPEASDFDTSAWAVLRSLRDTALLELLYSAGLRISEACNLDRADVDLRGGEL 186 Query: 189 RIQ-GKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 R++ GKG K R+VPL + AI + L+ P+F G GK LN QR Sbjct: 187 RVRHGKGGKQRMVPLGRTAVAAIEAWLQARTRAKPQLDPMGPIFTGQLGKRLNSREGQRL 246 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 + + R L LP S T H LRH+FATHLL G DLR+IQ ++GH LS TQ YT+++ + Sbjct: 247 LEKWRARLDLPESVTPHALRHAFATHLLQAGADLRAIQEMMGHASLSATQKYTHLDMQA- 305 Query: 307 GDWMMEIYDQTHP 319 + ++YD HP Sbjct: 306 ---LAKVYDAAHP 315 >gi|254429866|ref|ZP_05043573.1| tyrosine recombinase XerD [Alcanivorax sp. DG881] gi|196196035|gb|EDX90994.1| tyrosine recombinase XerD [Alcanivorax sp. DG881] Length = 312 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 103/305 (33%), Positives = 154/305 (50%), Gaps = 20/305 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +WL +E+GLS+ +L +Y D Q ++L ++ T+ + E F++ R Sbjct: 19 SWLDQQWLEKGLSEHSLSNYRRDISQLAVWL---QHQQATLLACERYQLLE---FLAARH 72 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q + RS+ R LS +KSF ++LK+ E L + K LP+ L+E L+ Sbjct: 73 QQGLSARSVARQLSAVKSFYRWLKREGRIAEDPALLIERPKLGRPLPKTLSEADVEALLA 132 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 L T + R+ A+L +LY GLR++E ++LT I Q +R+ GKGDK R+ Sbjct: 133 APDLSTP-----LGLRDRAMLEVLYATGLRVTELVTLTQSQINPRQGLIRVIGKGDKERL 187 Query: 200 VPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 VPL + Y L D Q LF RG + F I+QL Sbjct: 188 VPLGEEALHWLARYAQEGRPQLLAADQQGGNQELLFPSRRGTCMTRQTFWHRIKQLAVVA 247 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + + ++Y Sbjct: 248 GVQKKLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQQR----LQDVY 303 Query: 315 DQTHP 319 + HP Sbjct: 304 QKHHP 308 >gi|56419747|ref|YP_147065.1| site-specific tyrosine recombinase XerC [Geobacillus kaustophilus HTA426] gi|56379589|dbj|BAD75497.1| integrase/recombinase [Geobacillus kaustophilus HTA426] Length = 289 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 101/305 (33%), Positives = 159/305 (52%), Gaps = 25/305 (8%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 ++ L+IE+ S+ T+ Y D QF F+ ++ I + ++SY+++R +++K Q Sbjct: 1 MEYLQIEKNYSQYTIVCYRRDIEQFFRFM-----DEEGIGALNEVSYSDVRLYLTKLYEQ 55 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL--NEKQALTLVD 139 ++ RS+ R +S ++SF K+L + E+ KK +P L E +AL LV+ Sbjct: 56 QLASRSVARKISSLRSFYKFLLREGRAAENPFALATLPKKEQKIPNFLYPKELEALFLVN 115 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + E + RN+A+L LLY G R+SE + ++ T+ I GKG+K R Sbjct: 116 D-------ENTALGQRNAALLELLYATGARVSECCHIQLSDVDFVAETVLIHGKGNKQRY 168 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYL 254 VP R+A+ Y +L +LP LF RG PL P + + ++ Sbjct: 169 VPFGRPAREALERYIHRGRRELTR--KLPADHRYLFVNARGNPLTPRGVRHILDRIVEAA 226 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 L + + H LRH+FATHLL+ G DLRS+Q +LGH LS+TQ+YT+V D + IY Sbjct: 227 ALTQNISPHVLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTK----DRLRHIY 282 Query: 315 DQTHP 319 Q HP Sbjct: 283 LQAHP 287 >gi|188586285|ref|YP_001917830.1| tyrosine recombinase XerD subunit [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350972|gb|ACB85242.1| tyrosine recombinase XerD subunit [Natranaerobius thermophilus JW/NM-WN-LF] Length = 295 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 97/296 (32%), Positives = 166/296 (56%), Gaps = 15/296 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +ERGLS+ TL SY D + FL FL ++ +T +++ T I ++ + + Sbjct: 12 LNVERGLSENTLNSYLRDLKNFLEFL---NQQGVT--KWQEVKRTHIMKYLIFMKEKGKA 66 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 ++ R+++ ++SF ++L + + +E+ ++ K+ LP L+ ++ VD LL+ Sbjct: 67 SATVTRNIASVRSFFQFLLQEGMISENPSTDLETPKQEKKLPEILSPQE----VDK-LLN 121 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 T + R+ A+L +LY G+R+SE +SL +++ + + +GKGDK RIVPL Sbjct: 122 QPDTTDFKGKRDKAMLEVLYATGMRVSELISLNVEHVDSNNGYILCKGKGDKERIVPLGK 181 Query: 205 SVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 K++ +Y L N+ P LF GK L+ F + +++ +G+ T H Sbjct: 182 MAIKSVSDYISKSRPQLRKNLSEPALFLNHHGKRLSRQGFWKILKKYAEKIGIKQKITPH 241 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 TLRHSFATHLL NG DLR++Q +LGH +STTQIYT++ + + ++Y ++HP Sbjct: 242 TLRHSFATHLLENGADLRAVQEMLGHSDISTTQIYTHLTKQR----LKDVYSKSHP 293 >gi|239908039|ref|YP_002954780.1| tyrosine recombinase XerC [Desulfovibrio magneticus RS-1] gi|239797905|dbj|BAH76894.1| tyrosine recombinase XerC [Desulfovibrio magneticus RS-1] Length = 308 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 105/313 (33%), Positives = 156/313 (49%), Gaps = 15/313 (4%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +L L +G S T+ +YE D QF FL + + ++ +R F+++ Sbjct: 3 EFLTALAAVKGYSPATVAAYEDDLAQFEAFL---RGRGLGLDAPEAITRDHVRGFLAELH 59 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 ++ S+ R LS ++ F KY ++K ++N K PRALN +A+ LV Sbjct: 60 RRRAAKSSMGRKLSTLRGFFKYQLQKKRLAADPTAGLKNPKAERRGPRALNADEAVALVT 119 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + + R+ A+ LLYG GLRISEAL L ++ Q R+ GKG K R+ Sbjct: 120 PPPAAPAADGSAAACRDLALAELLYGSGLRISEALGLDLDDLDLSQGIARVMGKGSKERL 179 Query: 200 VPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 PL + R+ + EY +L P + +L LF G RG L+ R + L + G Sbjct: 180 APLSDASRERLREYLRRRGELGPGPM----ELALFLGNRGGRLDRRQAARIVDALAKGAG 235 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 L H LRHSFATHLL +G DLRS+Q +LGH RL+TT YTN++ ++ IYD Sbjct: 236 LARHAHPHMLRHSFATHLLESGADLRSVQELLGHARLTTTTRYTNLDLAR----IVGIYD 291 Query: 316 QTHPSITQKDKKN 328 + HP K + + Sbjct: 292 KAHPRSDHKGEGD 304 >gi|297537394|ref|YP_003673163.1| tyrosine recombinase XerC [Methylotenera sp. 301] gi|297256741|gb|ADI28586.1| tyrosine recombinase XerC [Methylotenera sp. 301] Length = 294 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 103/309 (33%), Positives = 168/309 (54%), Gaps = 25/309 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++LQ+L ERGLS LTL++Y D Q L LA + + T+ + T+IR +I+ Sbjct: 6 DYLQHLTFERGLSALTLKNYARDI-QLLESLA----DNTALDTV---TNTQIRRYIATLH 57 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + + +++ R+LS + F YL K T++ ++ +R K + +LP+AL+ QA+ VD Sbjct: 58 GRGLSGKTIARALSAWRGFYNYLTHHKGYTQNPVMGLRAPKSAKTLPQALSTDQAVKFVD 117 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 ++ R+ AIL L Y GLR++E ++L + + T+ + GKG+K RI Sbjct: 118 ------IKGDGPLERRDHAILELFYSSGLRLAELVNLDIGMLDFSEGTVTVTGKGNKTRI 171 Query: 200 VPLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 VP+ AI + + D+N N LF +GK + P Q +++ G Sbjct: 172 VPMGSHAVSAIQTWLQSRALIKIADINPN---ALFVTQQGKRITPRAVQYRVKEWSIKQG 228 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 L +S H LRHSFA+H+L + DLR++Q +LGH +STTQIYT+++ ++ + IYD Sbjct: 229 LNISMHPHLLRHSFASHVLQSSQDLRAVQEMLGHANISTTQIYTHLDFQH----LASIYD 284 Query: 316 QTHPSITQK 324 HP +K Sbjct: 285 SAHPRAKKK 293 >gi|89091916|ref|ZP_01164871.1| tyrosine recombinase [Oceanospirillum sp. MED92] gi|89083651|gb|EAR62868.1| tyrosine recombinase [Oceanospirillum sp. MED92] Length = 299 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 105/319 (32%), Positives = 173/319 (54%), Gaps = 26/319 (8%) Query: 15 LKERQ--NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +KE Q ++ L ER LS TL +Y D +F F TEE+ I ++ ++R Sbjct: 1 MKEAQLEQFIHYLANERQLSPHTLDNYTRDINRFFDF----TEEQ-GIPAWSSVTAKQVR 55 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F ++ Q + +S++RSLS ++SF ++L + + ++ ++ K LP L+ Sbjct: 56 QFAAQIHRQGLAGKSIQRSLSALRSFFRFLSREGVVDQNPADAVQAPKSQRKLPETLDVD 115 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 Q L+D + + AR+SAI+ L+Y GLRISE + L ++ +LR+ G Sbjct: 116 QIDRLLDIPV------KDAVSARDSAIMELIYSSGLRISELVGLDIHSLDLADHSLRVLG 169 Query: 193 KGDKIRIVPLLPSVRKAI---LEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 KG+K R +P+ +AI L+Y ++L FD N LF RGK ++ Q+ + Sbjct: 170 KGNKQRELPIGRKALQAIDRWLDYRHELASFDEN-----ALFVSSRGKRISVRTVQQRMY 224 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 +YL + H LRHSFA+H+L + GDLR++Q +LGH +STTQIYT+++ ++ Sbjct: 225 HWGKYLEVNGHVHPHRLRHSFASHMLESSGDLRAVQELLGHEDISTTQIYTHLDFQH--- 281 Query: 309 WMMEIYDQTHPSITQKDKK 327 +M++Y+ HP +K KK Sbjct: 282 -LMQVYEGAHPRAHKKGKK 299 >gi|78224235|ref|YP_385982.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15] gi|78195490|gb|ABB33257.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15] Length = 294 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 106/308 (34%), Positives = 155/308 (50%), Gaps = 24/308 (7%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 +E ++++LE ER +S TL +Y D QF F+ T + + L A + Sbjct: 3 QEIAAFIRHLETERNVSPHTLAAYRSDLAQFREFVRQETGAAAEPEGVSHLLIRRWLALL 62 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 + T+ S+ R L+ +++F K+L + ++ + KK +P L+ +A Sbjct: 63 HRDHTKS----SVGRKLAAVRAFFKHLIRTGRLVKNPAELVSTPKKEKKVPYHLSIDEAT 118 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 LV+ T E + R+ AIL LY CG+R+SE L I D T R+ GKG Sbjct: 119 ALVE-----TPKEPDILSLRDRAILETLYSCGVRVSELTGLNIGGIDLDDGTARVLGKGG 173 Query: 196 KIRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 K RIVP+ S+ +A L +Y + P D PLF RG L P +R + + Sbjct: 174 KERIVPV-GSIARAALSHYLTARNHPPLDA------PLFTNARGGRLTPRSVRRVVDKHI 226 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 + + HTLRH+FATHLL G DLR+IQ +LGH LSTTQ YT+V G D +M Sbjct: 227 LRIAAMRKISPHTLRHTFATHLLEGGADLRAIQELLGHASLSTTQKYTHV----GIDRLM 282 Query: 312 EIYDQTHP 319 E+YD+ HP Sbjct: 283 EVYDKAHP 290 >gi|169831443|ref|YP_001717425.1| tyrosine recombinase XerD [Candidatus Desulforudis audaxviator MP104C] gi|169638287|gb|ACA59793.1| tyrosine recombinase XerD [Candidatus Desulforudis audaxviator MP104C] Length = 295 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 103/304 (33%), Positives = 162/304 (53%), Gaps = 23/304 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +L +ERGLS+ TL +Y D +QF FLA ++ + L + I A++ ++ Sbjct: 8 FLNHLHVERGLSENTLAAYRGDLQQFGAFLAAQG-----VRDLNDLQASHITAYLLAQK- 61 Query: 81 QKIGDR--SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 ++G R ++ R LS +++FLK+L + T + + K++ LPR L V Sbjct: 62 -RLGRRPATVARRLSAVRAFLKFLTAEGLVTANPAEYTGSPKQAQRLPRVLR-------V 113 Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 D V LL + R+ A++ +LY GLR+SEA++L ++ +R GKG + Sbjct: 114 DEVDRLLTAPDTANPMGLRDRALMEVLYASGLRVSEAVNLKVGDLDLRGGLVRCVGKGGR 173 Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 R+VP+ + + EY P L LF RG+PL + +++ R G Sbjct: 174 ERVVPVGGEAVRLVDEYLARSRPLLLKGRRTRFLFVNRRGQPLTRQTVWKLLKRYAREAG 233 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + T HTLRHSFATHLL NG DLR++Q +LGH + TTQIYT++ S+ + +YD Sbjct: 234 IQKEITPHTLRHSFATHLLENGADLRAVQEMLGHADIVTTQIYTHLTSRG----LRAVYD 289 Query: 316 QTHP 319 +THP Sbjct: 290 RTHP 293 >gi|163859107|ref|YP_001633405.1| site-specific tyrosine recombinase XerC [Bordetella petrii DSM 12804] gi|163262835|emb|CAP45138.1| putative integrase/recombinase [Bordetella petrii] Length = 326 Score = 152 bits (385), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 99/319 (31%), Positives = 158/319 (49%), Gaps = 27/319 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WLQ+L R S TL +Y D RQ + + + QL+ IR F+++ Sbjct: 19 WLQHLRAHRRYSPHTLDAYRRDLRQLAVL------AQAAGLPLEQLANGHIRQFVARLHA 72 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q +G RSL R+L+ + F ++ + + +R K + LP+AL+ +QA L+D+ Sbjct: 73 QGLGPRSLARTLAAWRGFYQWWAPGAGLAGNPVAGVRAPKAARGLPKALSVEQAQALLDH 132 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNIMD---------DQSTLR 189 + + + R+ A+ LLY GLR+SE L + + D D + + Sbjct: 133 ATSRLATDPAGL--RDRAMFELLYSSGLRLSELVGLDIRYERSADYESRSWLNLDDAEVV 190 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCP----FDLNLNIQLPLFRGIRGKPLNPGVFQR 245 + GKG K R VP+ + A+ + D P + LF G RG+ + P V Q Sbjct: 191 VLGKGGKRRAVPVGQAALTALRRWIDARPQLAAAAASAGDAAALFVGARGRRIAPRVVQL 250 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + +L + GLP H LRHSFA+H+L + DLR++Q +LGH +STTQIYT ++ ++ Sbjct: 251 QLARLAQAAGLPAHVHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQIYTRLDFQH 310 Query: 306 GGDWMMEIYDQTHPSITQK 324 + + YDQ HP +K Sbjct: 311 ----LAKAYDQAHPRAGRK 325 >gi|269219629|ref|ZP_06163483.1| integrase/recombinase XerC [Actinomyces sp. oral taxon 848 str. F0332] gi|269210871|gb|EEZ77211.1| integrase/recombinase XerC [Actinomyces sp. oral taxon 848 str. F0332] Length = 303 Score = 152 bits (384), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 104/304 (34%), Positives = 162/304 (53%), Gaps = 21/304 (6%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFL----AFYTEEKITIQTIRQLSYTEIRAFISKR 78 + L + RGLS+ T+ +Y + R L F+ EE + + R L ++RA++++ Sbjct: 12 RELRLRRGLSENTVAAYVREARSLLEFIWEIAGGDVEEPMDL---RGLELADVRAWLARS 68 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + +L R + I++F ++L ++ T ++ + N+LPR LN++QA L Sbjct: 69 QAKGRSRSTLARHSASIRTFCRWLHRKGHTDVDAAARLKAPRADNALPRVLNQEQARRLA 128 Query: 139 DNV-LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 ++ L S + + R+ A + LLY G+RI E SL ++ D STLR+ GKGDK Sbjct: 129 EHAGRLAASGDP--LALRDHAAVELLYASGIRIGELCSLDVDSLGAD-STLRVIGKGDKE 185 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RIVP R+A+ Y P L ++ LF G RG L+P ++ I +L G Sbjct: 186 RIVPFGVPARRALTAYL---PARAQLLVRPNRALFLGARGGRLDPRTLRKTIHRLAASAG 242 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 +P + H LRHS ATHLL G DLR++Q ILGH L TTQ YT+V+S+ + + Sbjct: 243 VP-DISPHDLRHSAATHLLDGGSDLRTVQEILGHASLGTTQRYTHVSSER----LRAAFT 297 Query: 316 QTHP 319 Q HP Sbjct: 298 QAHP 301 >gi|302389829|ref|YP_003825650.1| tyrosine recombinase XerD subunit [Thermosediminibacter oceani DSM 16646] gi|302200457|gb|ADL08027.1| tyrosine recombinase XerD subunit [Thermosediminibacter oceani DSM 16646] Length = 299 Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 107/318 (33%), Positives = 164/318 (51%), Gaps = 38/318 (11%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 ELLK+ +L+ L +E+GL++ T++SY D + +L+FL I I+ S T I Sbjct: 7 ELLKQ---FLEFLSVEKGLARNTIESYRRDLKSYLVFL-----RSQHIPDIKFTSKTTII 58 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 +++ + S+ R+ + IKSF +L + + E +N+ K LPR L + Sbjct: 59 SYLLLMQKSGKASSSISRACAAIKSFYHFLVRERYIQEDPTVNLDTPKLEKKLPRVLTVE 118 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + LL + + R+ +L +LY G+R+SE +SLT ++ D LR G Sbjct: 119 EV-----ERLLEQPDTSNPLGFRDKTMLEVLYATGIRVSELISLTVDDVNLDMGFLRCLG 173 Query: 193 KGDKIRIVPL-----------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241 KG K RIVP+ + VRK IL+ + NI LF G+ L Sbjct: 174 KGSKERIVPIGSFAVNYLRQYINDVRKKILK-------GKSTNI---LFVNHMGQALTRQ 223 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 F + I++ R G+ T HTLRHSFATHL+ NG DLR++Q +LGH +STTQ+YT++ Sbjct: 224 GFWKIIKKYARKAGINKVITPHTLRHSFATHLIENGADLRAVQEMLGHADISTTQVYTHI 283 Query: 302 NSKNGGDWMMEIYDQTHP 319 + E+YD+THP Sbjct: 284 TRTR----IKEVYDKTHP 297 >gi|257784281|ref|YP_003179498.1| tyrosine recombinase XerD [Atopobium parvulum DSM 20469] gi|257472788|gb|ACV50907.1| tyrosine recombinase XerD [Atopobium parvulum DSM 20469] Length = 302 Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 96/308 (31%), Positives = 165/308 (53%), Gaps = 12/308 (3%) Query: 12 FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71 +L + R ++ + +ERGLS TL +Y D +L +L + +KIT + Q++ +++ Sbjct: 1 MDLAQARTEYIAYVAVERGLSVNTLDAYTRDLEGYLFWL---SGKKIT--SPNQVTRSDV 55 Query: 72 RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131 +I R + S++R + I++F K++ +I S ++ + LP +++ Sbjct: 56 EEYIGSLRDLGMAPASVERHTAAIRNFHKFMAVEQICESSPAEDLPTTARIQRLPDVISQ 115 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 ++A L+D ++ + R+ AIL LLYGCGLR+SE L + ++ + LR+ Sbjct: 116 EKAEELLDQPFPNSP-----LGIRDKAILELLYGCGLRVSELCDLEVRGVLLEDELLRVF 170 Query: 192 GKGDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 GKG K R+VP+L S +A+ Y ++ L +F RG ++ + + Sbjct: 171 GKGSKERVVPVLGSAYRALKTYLFEARSLLLKHGQVSEVFVNARGGRISRQSVHKLVANY 230 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 R +G+ HTLRHSFATHLL G DLRS+Q +LGH +STTQ+YT+V+ + D Sbjct: 231 GRVVGIE-GLHPHTLRHSFATHLLEGGADLRSVQELLGHVDISTTQLYTHVDRSHIRDVY 289 Query: 311 MEIYDQTH 318 +E + + H Sbjct: 290 LEAHPRAH 297 >gi|332140209|ref|YP_004425947.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype'] gi|327550231|gb|AEA96949.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype'] Length = 308 Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 96/285 (33%), Positives = 157/285 (55%), Gaps = 10/285 (3%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +++ L +E+GLS+ T QSY D + +F I+ I LS +++ +++ R Sbjct: 21 GFIEMLWLEKGLSEHTQQSYRTDLSKLAVF-----SNNQGIKDIAVLSTEQLQDYLAYRH 75 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + + RS +R+LS I++F YL ++I +S + + N K +LP +L+E+Q V+ Sbjct: 76 DKGLSTRSTQRALSAIRAFFVYLISKQIRVDSPVSALSNPKTPKALPASLSEQQ----VE 131 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + LL+ I+ R+ ++L +LY GLR+SE + LT I Q +R+ GKG+K R+ Sbjct: 132 D-LLNAPQTDDPIECRDRSMLEVLYATGLRVSELIGLTMDQISLQQGVVRVVGKGNKERL 190 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 VPL + +L Y L ++ RG+ + F I+ G+ Sbjct: 191 VPLGEEAIEWLLTYIKTARPILATKTSDFVYLSKRGQKMTRQTFWHRIKYYAVKAGIEQH 250 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ Sbjct: 251 LSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATE 295 >gi|121535764|ref|ZP_01667566.1| tyrosine recombinase XerD [Thermosinus carboxydivorans Nor1] gi|121305663|gb|EAX46603.1| tyrosine recombinase XerD [Thermosinus carboxydivorans Nor1] Length = 295 Score = 152 bits (383), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 109/302 (36%), Positives = 162/302 (53%), Gaps = 19/302 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 ++ L +ERGL++ TL+SY D RQF +FL +K+ I I+ + I +++ ++ Sbjct: 8 FINYLAVERGLAQNTLESYGRDLRQFQLFL---QNDKLDI--IKDSNRNTILNYLNNLQS 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN--EKQALTLV 138 + ++ R+L+ IKSF +YL + + + N+ + K LP+ L+ E + L Sbjct: 63 KGRAVSTISRNLAAIKSFYQYLVRERYIDKDPAANLESPKLEKKLPKILSIAEVEELLKQ 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 N LL T R+ A+L LLY G+R+SE +SL ++ D ++ GKG K R Sbjct: 123 PNSLLPTG-------LRDKAMLELLYATGIRVSELISLNITDVNLDMGYIKCYGKGAKER 175 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 IVPL K + EY L P LF G L F + I++ + + Sbjct: 176 IVPLGSIAAKCVQEYIAKGRPKLVRTYDEPALFVNHHGNRLTRQGFWKIIKKYAQEANIT 235 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T HTLRHSFATHLL NG DLRS+Q +LGH +STTQIYT+V +KN + E+YD+ Sbjct: 236 KEITPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHV-TKN---RLKEVYDKA 291 Query: 318 HP 319 HP Sbjct: 292 HP 293 >gi|327183467|gb|AEA31914.1| tyrosine recombinase xerD [Lactobacillus amylovorus GRL 1118] Length = 301 Score = 152 bits (383), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 101/312 (32%), Positives = 168/312 (53%), Gaps = 18/312 (5%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 EL + ++L+ ++ERGLS T+ +Y D ++L +F +E ++ +++ Sbjct: 5 ELQDQIDDYLRFSQVERGLSTNTISAYRQDLEEYL---SFIKKEGVSSWPT---EASDVD 58 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 AF++++R S+ R +S ++ F ++L ++ I + +L + KK LP AL+ + Sbjct: 59 AFLARQRDLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALSRE 118 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + N LL + + R+ AIL LY G+R+SE ++L Q+I +D +R+ G Sbjct: 119 EV-----NRLLEQPDVEQKLGLRDRAILETLYATGMRVSELINLELQDIHEDLGLIRVLG 173 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI---QLPLFRGIRGKPLNPGVFQRYIRQ 249 KG K R++P+ P I +Y L L LF RG L + I++ Sbjct: 174 KGSKERLIPISPVALHWIDKYQKQVRDPLILKSGKNDEHLFLNNRGGKLTRQAIWQMIKK 233 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 + G+ T HTLRH+FATHLL NG DLR +Q ILGH +STTQIYTN++ K+ Sbjct: 234 YCQMAGITKDVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKH---- 289 Query: 310 MMEIYDQTHPSI 321 ++++Y +THP + Sbjct: 290 ILQVYQKTHPRL 301 >gi|300361568|ref|ZP_07057745.1| tyrosine recombinase XerD [Lactobacillus gasseri JV-V03] gi|300354187|gb|EFJ70058.1| tyrosine recombinase XerD [Lactobacillus gasseri JV-V03] Length = 302 Score = 152 bits (383), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 99/305 (32%), Positives = 165/305 (54%), Gaps = 20/305 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L+ ++ERGLS T+ SY D ++L +L E T ++ Y + AF++ + Sbjct: 12 EDYLRFSQVERGLSPNTIISYRTDLEEYLDYLQDQNE------TSWEVDYLVVDAFLAAQ 65 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + S+ R +S ++ F ++L ++ I ++ + + K LP AL+E++ V Sbjct: 66 KDKGKATTSISRMISSLRKFYQWLLRQDIIERDPLIKIDSPKSERRLPTALSEEE----V 121 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D +L T + R+ A+L LLY G+R+SE ++L +I D +R+ GKG K R Sbjct: 122 DKLLAAPDTNTP-LGIRDRAMLELLYATGMRVSELINLRTGDIHSDLKIIRVLGKGSKER 180 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 +VP+ V + LE Y D + +F G L + I++ + + Sbjct: 181 LVPI-TEVALSWLEKYQKDVRDAQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKYCQLV 239 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ + T HTLRH+FATHLL NG DLR +Q ILGH ++TTQIYTN+ K+ ++E+Y Sbjct: 240 GITKNVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKH----ILEVY 295 Query: 315 DQTHP 319 +Q HP Sbjct: 296 NQAHP 300 >gi|157692850|ref|YP_001487312.1| site-specific tyrosine recombinase XerD [Bacillus pumilus SAFR-032] gi|157681608|gb|ABV62752.1| tyrosine recombinase [Bacillus pumilus SAFR-032] Length = 296 Score = 152 bits (383), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 102/308 (33%), Positives = 162/308 (52%), Gaps = 28/308 (9%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +++ + +ERGLS+ T+ SY+ D + +L FL T E+++ I+ ++ I ++ + + Sbjct: 7 DFIHFMTVERGLSENTIVSYKRDLQNYLSFLM--THEQLS--DIKDVTRLHIIHYLKQLK 62 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + ++ R LS I+SF ++L + K+T + N+ K LP+ L+ + L+D Sbjct: 63 EEGKSSKTSVRHLSSIRSFHQFLLREKVTKDDPSWNIETQKTERKLPKVLSLGEVEKLLD 122 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 HT D R+ A+L LLY G+R+SE L LT ++ +R GKG K RI Sbjct: 123 TPNQHTP-----FDYRDKAMLELLYATGIRVSEMLDLTLADVHLTMGFIRCFGKGRKERI 177 Query: 200 VPLLPSVRKAILEYYDLC--------PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 VP+ + AI EY + P D LF GK ++ F + +++ Sbjct: 178 VPIGEAAASAIEEYLEKGRGKLLKKQPAD-------ALFLNHHGKKMSRQGFWKNLKKRA 230 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 G+ T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V + Sbjct: 231 LEAGIQKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTR----LK 286 Query: 312 EIYDQTHP 319 ++Y + HP Sbjct: 287 DVYHKFHP 294 >gi|224369851|ref|YP_002604015.1| site-specific recombinase XerD (DNA replication, recombination and repair) [Desulfobacterium autotrophicum HRM2] gi|223692568|gb|ACN15851.1| site-specific recombinase XerD (DNA replication, recombination and repair) [Desulfobacterium autotrophicum HRM2] Length = 297 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 100/305 (32%), Positives = 155/305 (50%), Gaps = 21/305 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIF------LAFYTEEKITIQTIRQLSYTEIRAF 74 +LQ L E+G S T+++Y D FL F +A T+E++ ++ IR +R F Sbjct: 6 FLQTLSSEKGYSPHTIRAYGGDLTAFLGFCFPGKPVAAITDEQL-LKEIRDSETNPVRGF 64 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 + +K+ R++ R LS +KSF YL + + K S+P+ L + Sbjct: 65 LMDLAKKKVTRRTISRRLSALKSFFNYLVVVGKIEVNPAQGVSAPKLPRSIPQFLTVDEL 124 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 TL+D++ T +D RN A+ L Y G+R+SE +L +I + +R++GKG Sbjct: 125 FTLLDSIKTRT-----VVDKRNRAVFELFYSTGMRVSELSNLNVGDIDRESHLVRVRGKG 179 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 ++ R+VP+ KA+ +Y + LF + +R + L + Sbjct: 180 NRERLVPVGDRALKAVDDYRTCIDGEFG-----ALFLNRDAHRFSDSSIRRVLSVLVKAC 234 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 GL + + HTLRHSFATH+L G DLR IQ ILGH LS+TQIYT+V +ME+Y Sbjct: 235 GLGVPVSPHTLRHSFATHMLDAGADLRGIQEILGHASLSSTQIYTHVTYAR----LMEVY 290 Query: 315 DQTHP 319 D+ HP Sbjct: 291 DRAHP 295 >gi|227890931|ref|ZP_04008736.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus salivarius ATCC 11741] gi|227867340|gb|EEJ74761.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus salivarius ATCC 11741] Length = 290 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 102/302 (33%), Positives = 167/302 (55%), Gaps = 17/302 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L L++ERGLS+ T+ SY D + FL +L + I + +Q++ I ++ + Sbjct: 2 DYLHYLKVERGLSENTINSYGIDLKLFLEYL-----RENEIPSFKQVNKEVIVNYMQAEK 56 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + S+ RS+S ++ F +YL + KI + +L + KK LP+ L +++ Sbjct: 57 NNNKANSSILRSVSSLRKFFQYLAQEKIIEKDPMLLIDTPKKKQHLPQVLTKEEV----- 111 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 LLH+ + + + R+ A+L L+Y GLRISE ++L +++ TL+ GKG K RI Sbjct: 112 EKLLHSPNTGQVLGLRDRAMLELMYATGLRISEIINLKLEDLHLTMGTLQTLGKGHKERI 171 Query: 200 VPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYLGLP 257 VP+ K + Y + P L LF G L GV++ ++R+ G+ Sbjct: 172 VPVGDEAIKWVNRYLEEARPKLLKQKRSNYLFLNFHGNNLTRQGVWKNLKAEVRK-AGIQ 230 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + T HTLRHSFATH+L NG DLR +Q +LGH +STTQIYT++++K + +IY++ Sbjct: 231 KNITPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHLSNKQ----LTDIYNRA 286 Query: 318 HP 319 HP Sbjct: 287 HP 288 >gi|114566378|ref|YP_753532.1| hypothetical protein Swol_0842 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337313|gb|ABI68161.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 290 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 97/300 (32%), Positives = 162/300 (54%), Gaps = 17/300 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLA---FYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 + +E+ S TL SY+ D QF FL+ E++ ++ I S+ +R ++++ + + Sbjct: 1 MRVEKSASNFTLSSYKTDLSQFFAFLSQKKGINPEEVGVELI---SHNSVRKYLAQMQEK 57 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 + ++ R L+ ++SF+K+L + I ++ I + K+ LPR L ++ ++ Sbjct: 58 GLSRATMARKLAALRSFIKFLCRENILADNPIAAVSTPKQERKLPRFLYTREI-----DL 112 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 L++ + R+ AIL LY GLR+SE +L +I + +++ GKG K RIVP Sbjct: 113 LMNAPDLSMAAGKRDRAILETLYASGLRVSELTNLDKPDIDFGEDYIKVLGKGGKERIVP 172 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 L R+A+L Y L Q LF G+ L+ + I + + + Sbjct: 173 LGSKAREALLLYLQQGRVYLEAKGQASPALFLNKNGQRLSTRSIRNIINKYVETIAINQK 232 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRHSFATHLL+NG DLRS+Q +LGH +LSTTQIYT+++ + + +I+ QTHP Sbjct: 233 VSPHTLRHSFATHLLNNGADLRSVQELLGHVKLSTTQIYTHLSR----EKIKDIHQQTHP 288 >gi|69248064|ref|ZP_00604609.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus faecium DO] gi|68194583|gb|EAN09074.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus faecium DO] Length = 284 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 103/296 (34%), Positives = 159/296 (53%), Gaps = 15/296 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 + IERGLS T QSYE D Q+L FL E+KI + + + + F+ K +K Sbjct: 1 MNIERGLSANTRQSYERDLEQYLHFLQ---EQKIA--SWQDVDRFLVIRFLEKLHEEKKA 55 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 ++ R +S ++ F ++L++ +IT + ++ KK+ LP L LT V+ L+ Sbjct: 56 TATVTRMISSLRRFHQFLRQERITDHDPMQHIDTPKKAQKLPSTLT----LTEVEK-LIE 110 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 TK + R+ AIL ++Y G+R+SE + L ++ ++ GKGDK RI+PL Sbjct: 111 APDTTKTLGIRDRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGKGDKERIIPLGD 170 Query: 205 SVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 + + Y D P + ++ +F GK L+ + ++QL R G+ T H Sbjct: 171 YAIQWLERYLDEARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVREAGIYKEVTPH 230 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 TLRHSFATHLL NG DLR++Q +LGH +STTQIYT++ K M ++Y Q P Sbjct: 231 TLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR----MTDVYKQHFP 282 >gi|291515062|emb|CBK64272.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 300 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 97/305 (31%), Positives = 163/305 (53%), Gaps = 19/305 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFL----AFYTEEKITIQTIRQLSYTEIRAFI 75 ++++ LE ER S LT+++Y D QFL +L A + ++IT IR+ + Sbjct: 4 DFVRYLEAERRYSPLTVRNYRHDVEQFLAWLGVDDARFEPQRITTDDIREW-------IL 56 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 + T ++ S+ R +S +++ ++L + + + +L+ S LP + E + Sbjct: 57 YRTETGRVSAASMNREISSLRALFRWLLRTGAVGRDVVHPIPSLRTSQRLPAFVPESRMN 116 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 +V + ++ RNS I+ LLY CGLR++E + + + D S+LRI+GKGD Sbjct: 117 GIVSECECDSE---DFVRERNSLIILLLYTCGLRLAELVGIDRDDFSADFSSLRIRGKGD 173 Query: 196 KIRIVPLLPSVRKAILEYYDLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 K RIVP+L VR+ IL Y L ++ ++ + LF +GK ++ R +++ Sbjct: 174 KERIVPMLEFVREKILHYIGLIERQNICISSEKALFLTHKGKRISRTAVYRTVQEELDRA 233 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ + H LRH+FATHLL++G D+R IQ +LGH L TQ+YT+ N + EIY Sbjct: 234 GVQGKKSPHVLRHTFATHLLNSGADMREIQELLGHASLQATQVYTH----NSIARLREIY 289 Query: 315 DQTHP 319 + HP Sbjct: 290 AKAHP 294 >gi|138894733|ref|YP_001125186.1| site-specific tyrosine recombinase XerC [Geobacillus thermodenitrificans NG80-2] gi|134266246|gb|ABO66441.1| Integrase/recombinase (XerC/CodV family) [Geobacillus thermodenitrificans NG80-2] Length = 309 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 102/306 (33%), Positives = 159/306 (51%), Gaps = 21/306 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +L+ L+IE+ S+ T+ Y D QFL F+ EE I + +++Y+++R +++K Sbjct: 18 QLFLEYLQIEKNYSQYTIVCYRRDIEQFLQFM---NEE--GIDELNEVAYSDVRLYLTKL 72 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q++ RS+ R +S ++SF K+L + T E+ KK +P L ++ Sbjct: 73 YGQQLASRSVARKISSLRSFYKFLLREGWTAENPFALAALPKKEQKIPNFLYREEL---- 128 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L + + RN+A+L LLY G R+SE + ++ ST+ I GKG+K R Sbjct: 129 -EALFRVNDGNTAVGQRNAALLELLYATGARVSECCHIRLSDLDFAASTVLIHGKGNKQR 187 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRY 253 VP R+A+ Y + L +LP LF RG PL P + + ++ Sbjct: 188 YVPFGRPAREALERY--IGGGRRELVGKLPADHRYLFVNARGNPLTPRGVRYILDRIVET 245 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 L + + H LRH+FATHLL+ G DLRS+Q +LGH LS+TQ+YT+V D + I Sbjct: 246 AALTQNISPHVLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTK----DRLRCI 301 Query: 314 YDQTHP 319 Y Q HP Sbjct: 302 YLQAHP 307 >gi|315038190|ref|YP_004031758.1| tyrosine recombinase XerD [Lactobacillus amylovorus GRL 1112] gi|312276323|gb|ADQ58963.1| tyrosine recombinase XerD [Lactobacillus amylovorus GRL 1112] Length = 301 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 101/312 (32%), Positives = 168/312 (53%), Gaps = 18/312 (5%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 EL + ++L+ ++ERGLS T+ +Y D ++L +F +E ++ +++ Sbjct: 5 ELQDQIDDYLRFSQVERGLSTNTISAYRQDLEEYL---SFIKKEGMSSWPT---EASDVD 58 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 AF++++R S+ R +S ++ F ++L ++ I + +L + KK LP AL+ + Sbjct: 59 AFLARQRDLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALSRE 118 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + N LL + + R+ AIL LY G+R+SE ++L Q+I +D +R+ G Sbjct: 119 EV-----NRLLEQPDVEQKLGLRDRAILETLYATGMRVSELINLELQDIHEDLGLIRVLG 173 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI---QLPLFRGIRGKPLNPGVFQRYIRQ 249 KG K R++P+ P I +Y L L LF RG L + I++ Sbjct: 174 KGSKERLIPISPVALHWIDKYQKQVRDPLILKSGKNDEHLFLNNRGGKLTRQAIWQMIKK 233 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 + G+ T HTLRH+FATHLL NG DLR +Q ILGH +STTQIYTN++ K+ Sbjct: 234 YCQMAGITKDVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKH---- 289 Query: 310 MMEIYDQTHPSI 321 ++++Y +THP + Sbjct: 290 ILQVYQKTHPRL 301 >gi|116629539|ref|YP_814711.1| integrase [Lactobacillus gasseri ATCC 33323] gi|238852689|ref|ZP_04643099.1| tyrosine recombinase XerD [Lactobacillus gasseri 202-4] gi|311110818|ref|ZP_07712215.1| tyrosine recombinase XerD [Lactobacillus gasseri MV-22] gi|116095121|gb|ABJ60273.1| tyrosine recombinase XerD subunit [Lactobacillus gasseri ATCC 33323] gi|238834835|gb|EEQ27062.1| tyrosine recombinase XerD [Lactobacillus gasseri 202-4] gi|311065972|gb|EFQ46312.1| tyrosine recombinase XerD [Lactobacillus gasseri MV-22] Length = 302 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 98/305 (32%), Positives = 165/305 (54%), Gaps = 20/305 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L+ ++ERGLS T+ SY D ++L +L E T ++ Y + AF++ + Sbjct: 12 EDYLRFSQVERGLSPNTIISYRTDLEEYLDYLQDQNE------TSWEVDYLVVDAFLATQ 65 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + S+ R +S ++ F ++L ++ I ++ + + K LP AL+E++ V Sbjct: 66 KDKGKATTSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEE----V 121 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D +L T + R+ A+L +LY G+R+SE ++L +I D +R+ GKG K R Sbjct: 122 DKLLAAPDTNTP-LGIRDRAMLEVLYATGMRVSELINLRTGDIHADLKIIRVLGKGSKER 180 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 +VP+ V + LE Y D + +F G L + I++ + + Sbjct: 181 LVPI-TEVALSWLEKYQTDVRDAQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKYCQLI 239 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ + T HTLRH+FATHLL NG DLR +Q ILGH ++TTQIYTN+ K+ ++E+Y Sbjct: 240 GITKNVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKH----ILEVY 295 Query: 315 DQTHP 319 +Q HP Sbjct: 296 NQAHP 300 >gi|296117987|ref|ZP_06836570.1| tyrosine recombinase XerD [Corynebacterium ammoniagenes DSM 20306] gi|295969218|gb|EFG82460.1| tyrosine recombinase XerD [Corynebacterium ammoniagenes DSM 20306] Length = 322 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 100/318 (31%), Positives = 155/318 (48%), Gaps = 21/318 (6%) Query: 7 PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66 PE+VS Q WL +L +E+G SK T+ +Y D ++++ +L I T+ ++ Sbjct: 19 PELVSVA-----QGWLDHLAVEKGASKNTVSNYRRDLKRYVSWLT-----TANISTLSEV 68 Query: 67 SYTEIRAFISKRRTQKIGDRSLK-----RSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121 S + ++++ R G + L R+L + K+ + + Sbjct: 69 SSHHVESYVADLRRGWDGQKPLSSASTSRALIVARGLHKFALSEGLIDVDVAAEVAPPSP 128 Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 LP +L+ + L+D+V +D R+ A+L +LYG G R+SE L L ++ Sbjct: 129 GKHLPDSLSIDEVTRLIDSVP--AGEVATAVDIRDKALLEMLYGTGARVSELLDLAVDDV 186 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241 D L + GKG K R+VPL R AI EY L+ LF GKPL+ Sbjct: 187 ADSPEILTVTGKGSKQRLVPLGSHARTAIEEYLVRARPQLSRGKSHALFLNTLGKPLSRQ 246 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 I+Q + GL + HTLRHSFATHLL G D+R++Q +LGH ++TTQIYT+V Sbjct: 247 SAWAVIQQAVQRAGLDKKVSPHTLRHSFATHLLQGGADVRTVQELLGHSSVTTTQIYTHV 306 Query: 302 NSKNGGDWMMEIYDQTHP 319 + D + E++ HP Sbjct: 307 TA----DSLREVWRVAHP 320 >gi|292493801|ref|YP_003529240.1| tyrosine recombinase XerC [Nitrosococcus halophilus Nc4] gi|291582396|gb|ADE16853.1| tyrosine recombinase XerC [Nitrosococcus halophilus Nc4] Length = 300 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 101/318 (31%), Positives = 167/318 (52%), Gaps = 30/318 (9%) Query: 16 KERQNWLQ----NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71 +E+Q W+Q +L+ ERGLS T+ SY D + F ++ IQ +L ++ Sbjct: 3 EEQQAWIQRFLTHLQYERGLSGQTIVSYRRDLAKVATFC-----DRHGIQGWGELDAQKV 57 Query: 72 RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131 RA ++ + + RS++R LS ++SF YL++ + + K LP AL+ Sbjct: 58 RALVAAHHQKGLSGRSIQRLLSALRSFSTYLQREGVVENHPAQGVSAPKGKRQLPHALDV 117 Query: 132 KQALTLV-----DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 Q L+ D +LL R+ A+L L Y GLR++E + L + + + + Sbjct: 118 DQVAQLLKGEPSDQLLL-----------RDQAMLELFYSSGLRLAELVGLNLRELDLEAA 166 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 +R+ GKG K R VPL + A+L + + N Q +F +G+ L+P Q+ Sbjct: 167 LVRVVGKGAKTREVPLGRQAKAALLAWLPVREAWTPRN-QDAVFVSRQGRRLSPRGVQKR 225 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 +R GL ++ H LRH+FA+HLL + GDLR++Q +LGH +STTQIYT+++ ++ Sbjct: 226 LRIWGLRQGLDVAIHPHRLRHAFASHLLESSGDLRAVQELLGHADISTTQIYTHLDFQH- 284 Query: 307 GDWMMEIYDQTHPSITQK 324 + ++YDQTHP +K Sbjct: 285 ---LAKVYDQTHPRARKK 299 >gi|282852078|ref|ZP_06261436.1| tyrosine recombinase XerD [Lactobacillus gasseri 224-1] gi|282556838|gb|EFB62442.1| tyrosine recombinase XerD [Lactobacillus gasseri 224-1] Length = 296 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 98/305 (32%), Positives = 165/305 (54%), Gaps = 20/305 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L+ ++ERGLS T+ SY D ++L +L E T ++ Y + AF++ + Sbjct: 6 EDYLRFSQVERGLSPNTIISYRTDLEEYLDYLQDQNE------TSWEVDYLVVDAFLATQ 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + S+ R +S ++ F ++L ++ I ++ + + K LP AL+E++ V Sbjct: 60 KDKGKATTSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEE----V 115 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D +L T + R+ A+L +LY G+R+SE ++L +I D +R+ GKG K R Sbjct: 116 DKLLAAPDTNTP-LGIRDRAMLEVLYATGMRVSELINLRTGDIHADLKIIRVLGKGSKER 174 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 +VP+ V + LE Y D + +F G L + I++ + + Sbjct: 175 LVPI-TEVALSWLEKYQTDVRDAQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKYCQLI 233 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ + T HTLRH+FATHLL NG DLR +Q ILGH ++TTQIYTN+ K+ ++E+Y Sbjct: 234 GITKNVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKH----ILEVY 289 Query: 315 DQTHP 319 +Q HP Sbjct: 290 NQAHP 294 >gi|297205885|ref|ZP_06923280.1| tyrosine recombinase XerD [Lactobacillus jensenii JV-V16] gi|297149011|gb|EFH29309.1| tyrosine recombinase XerD [Lactobacillus jensenii JV-V16] Length = 300 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 108/331 (32%), Positives = 172/331 (51%), Gaps = 45/331 (13%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 M+ NNL ++ F L+ +ERGLSK T+ SY+ D QF+ +L +EKIT Sbjct: 1 MKKNNLDQVADF---------LRFCSLERGLSKNTVDSYQLDLNQFIEYL---DKEKITD 48 Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 L I ++++K+R + ++ R ++ ++ F +YL ++ I ++ + K Sbjct: 49 WPEDPLI---IDSYLAKQRDEGKKTSTISRGITTLRRFYRYLLRQHILVVDPLIQIDTPK 105 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 + LP AL++K+ L+ + T+ R+ AIL LLY G+R+SE ++L + Sbjct: 106 QEKRLPLALSQKEVEQLLAQPDIKTT-----TGLRDRAILELLYATGMRVSELINLKEAD 160 Query: 181 IMDDQSTLRIQGKGDKIRIVPL-----------LPSVRK-AILEYYDLCPFDLNLNIQLP 228 + D +R+ GKG K R+VP+ L +VR A+L+ C F Sbjct: 161 LHTDLKIIRVLGKGSKERLVPVTDFALNWLDKYLKNVRDPALLKKGVACDF--------- 211 Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288 LF R L + I++ + + T HTLRH+FATHLL NG DLR +Q ILG Sbjct: 212 LFLNNRAGQLTRQAVWQSIKKYSKLAKIDKDITPHTLRHTFATHLLENGADLRVVQEILG 271 Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H +STTQIYTN++ K+ + ++Y +THP Sbjct: 272 HSDISTTQIYTNLSQKH----IFDVYQKTHP 298 >gi|254427826|ref|ZP_05041533.1| tyrosine recombinase XerC [Alcanivorax sp. DG881] gi|196193995|gb|EDX88954.1| tyrosine recombinase XerC [Alcanivorax sp. DG881] Length = 307 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 96/308 (31%), Positives = 165/308 (53%), Gaps = 16/308 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +L ER LS T+ SY+ D + L + +T+ IR L+ T R Sbjct: 15 FLTHLASERRLSPHTVSSYQRDLVEARKVLGTQPWDTLTVHDIRSLAAT-------LHRK 67 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 K G ++++R LS +++F +YL + + ++ +++R K LP+AL+ Q L+D Sbjct: 68 GKSG-KTIQRMLSTLRTFFRYLMREGLARDNPAMDIRAPKSGKRLPKALDADQVSHLLDA 126 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 +H ++ + R+ A++ LLY CGLR++E LSL +I L + GKG+K R + Sbjct: 127 ----GTHSSEPLALRDQAMMELLYACGLRLAELLSLNLDSIDLRDGQLLVTGKGNKTRQL 182 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 P+ A+ + + P + Q LF G+ L+P Q+ +++ GL Sbjct: 183 PVGKPALTAVRRWLKVRPLLIKSGEQTALFISKNGRRLSPSSVQQRLKRHALERGLDDHL 242 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 H LRHSFATHLL + GDLR++Q +LGH L+TTQ+YT+++ ++ + ++YD HP Sbjct: 243 HPHKLRHSFATHLLESSGDLRAVQELLGHADLATTQVYTHLDFQH----LAQVYDGAHPR 298 Query: 321 ITQKDKKN 328 ++ ++ Sbjct: 299 AQRRKDED 306 >gi|227889862|ref|ZP_04007667.1| integrase-recombinase [Lactobacillus johnsonii ATCC 33200] gi|227849726|gb|EEJ59812.1| integrase-recombinase [Lactobacillus johnsonii ATCC 33200] Length = 296 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 95/308 (30%), Positives = 167/308 (54%), Gaps = 26/308 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L+ ++ERGLS T+ SY D ++L +L E T ++ Y + +F++ + Sbjct: 6 EDYLRFSQVERGLSPNTIVSYRTDLEEYLSYLEDQNE------TSWEVDYLVVDSFLATQ 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + S+ R +S ++ F ++L ++ I ++ + + K LP AL+E++ L+ Sbjct: 60 KDKGKATTSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEEVTKLL 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D +TS + R+ A+L +LY G+R+SE ++L +I + +R+ GKG K R Sbjct: 120 DAPDTNTS-----LGIRDRAMLEVLYATGMRVSELINLRTGDIHSELKIIRVLGKGSKER 174 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-------LFRGIRGKPLNPGVFQRYIRQLR 251 +VP + + L + + D+ N L +F G L + I++ Sbjct: 175 LVP----ITEVALSWLEKYQKDVRENQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKYC 230 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 + +G+ + T HTLRH+FATHLL NG DLR +Q ILGH ++TTQIYTN+ K+ ++ Sbjct: 231 QLIGITKNVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKH----IL 286 Query: 312 EIYDQTHP 319 E+Y+Q HP Sbjct: 287 EVYNQAHP 294 >gi|329667457|gb|AEB93405.1| integrase/recombinase XerD [Lactobacillus johnsonii DPC 6026] Length = 296 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 96/308 (31%), Positives = 166/308 (53%), Gaps = 26/308 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L+ ++ERGLS T+ SY D ++L +L E T ++ Y + AF++ + Sbjct: 6 EDYLRFSQVERGLSPNTIVSYRTDLEEYLSYLEDQNE------TSWEVDYLVVDAFLATQ 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + S+ R +S ++ F ++L ++ I ++ + + K LP AL+E++ L+ Sbjct: 60 KDKGKATTSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEEVTKLL 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D +T + R+ A+L +LY G+R+SE ++L +I + +R+ GKG K R Sbjct: 120 DAPDTNTR-----LGIRDRAMLEVLYATGMRVSELINLRTGDIHSELKIIRVLGKGSKER 174 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-------LFRGIRGKPLNPGVFQRYIRQLR 251 +VP V + L + + D+ N L +F G L + I++ Sbjct: 175 LVP----VTEVALSWLEKYQKDVRENQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKYC 230 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 + +G+ + T HTLRH+FATHLL NG DLR +Q ILGH ++TTQIYTN+ K+ ++ Sbjct: 231 QLIGITKNVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKH----IL 286 Query: 312 EIYDQTHP 319 E+Y+Q HP Sbjct: 287 EVYNQAHP 294 >gi|256851002|ref|ZP_05556391.1| tyrosine recombinase XerD [Lactobacillus jensenii 27-2-CHN] gi|260661214|ref|ZP_05862128.1| tyrosine recombinase XerD [Lactobacillus jensenii 115-3-CHN] gi|282932045|ref|ZP_06337503.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1] gi|256616064|gb|EEU21252.1| tyrosine recombinase XerD [Lactobacillus jensenii 27-2-CHN] gi|260548151|gb|EEX24127.1| tyrosine recombinase XerD [Lactobacillus jensenii 115-3-CHN] gi|281303812|gb|EFA95956.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1] Length = 300 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 108/331 (32%), Positives = 172/331 (51%), Gaps = 45/331 (13%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 M+ NNL ++ F L+ +ERGLSK T+ SY+ D QF+ +L +EKIT Sbjct: 1 MKKNNLDQVADF---------LRFCSLERGLSKNTVDSYQLDLNQFIEYL---DKEKITD 48 Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 L I ++++K+R + ++ R ++ ++ F +YL ++ I ++ + K Sbjct: 49 WPEDPLI---IDSYLAKQRDEGKKTSTISRGITTLRRFYRYLLRQHILVVDPLIQIDTPK 105 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 + LP AL++K+ L+ + T+ R+ AIL LLY G+R+SE ++L + Sbjct: 106 QEKRLPLALSQKEVEQLLAQPDIKTT-----TGLRDRAILELLYATGMRVSELINLKEAD 160 Query: 181 IMDDQSTLRIQGKGDKIRIVPL-----------LPSVRK-AILEYYDLCPFDLNLNIQLP 228 + D +R+ GKG K R+VP+ L +VR A+L+ C F Sbjct: 161 LHTDLKIIRVLGKGSKERLVPVTDFALSWLDKYLKNVRDPALLKKGVACDF--------- 211 Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288 LF R L + I++ + + T HTLRH+FATHLL NG DLR +Q ILG Sbjct: 212 LFLNNRAGQLTRQAVWQSIKKYSKLAKIDKDITPHTLRHTFATHLLENGADLRVVQEILG 271 Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H +STTQIYTN++ K+ + ++Y +THP Sbjct: 272 HSDISTTQIYTNLSQKH----IFDVYQKTHP 298 >gi|196247646|ref|ZP_03146348.1| tyrosine recombinase XerC [Geobacillus sp. G11MC16] gi|196212430|gb|EDY07187.1| tyrosine recombinase XerC [Geobacillus sp. G11MC16] Length = 300 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 101/306 (33%), Positives = 158/306 (51%), Gaps = 21/306 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +L+ L+IE+ S+ T+ Y D QFL F+ EE I + +++Y+++R +++K Sbjct: 9 QLFLEYLQIEKNYSQYTIVCYRRDIEQFLQFM---NEE--GIDELNEVAYSDVRLYLTKL 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q++ RS+ R +S ++SF K+L + E+ KK +P L ++ Sbjct: 64 YGQQLASRSVARKISSLRSFYKFLLREGWAAENPFALAALPKKEQKIPNFLYREEL---- 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L + + RN+A+L LLY G R+SE + ++ ST+ I GKG+K R Sbjct: 120 -EALFRVNDGNTAVGQRNAALLELLYATGARVSECCHIRLSDLDFAASTVLIHGKGNKQR 178 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRY 253 VP R+A+ Y + L +LP LF RG PL P + + ++ Sbjct: 179 YVPFGRPAREALERY--IGGGRRELVGKLPADHRYLFVNARGNPLTPRGVRYILDRIVET 236 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 L + + H LRH+FATHLL+ G DLRS+Q +LGH LS+TQ+YT+V D + I Sbjct: 237 AALTQNISPHVLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTK----DRLRRI 292 Query: 314 YDQTHP 319 Y Q HP Sbjct: 293 YLQAHP 298 >gi|296133169|ref|YP_003640416.1| tyrosine recombinase XerD [Thermincola sp. JR] gi|296031747|gb|ADG82515.1| tyrosine recombinase XerD [Thermincola potens JR] Length = 295 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 98/302 (32%), Positives = 159/302 (52%), Gaps = 15/302 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + ++ L +ERGL++ TL+SY D ++ FL+ K I + T + A++ Sbjct: 6 EEFIYYLTVERGLAENTLESYARDLERYSAFLS-----KHGITKFEATNKTNVMAYLLHL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + Q ++ R L+ +KSF +YL + K + +N+ + K LPR L+ ++ Sbjct: 61 QKQGKATSTISRHLASLKSFYQYLLREKHIEQDPTVNLESPKLQKKLPRVLSVEEV---- 116 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 +LL+ + +R+ A+L LLY G+R+SE +SL ++ + +R GKG K R Sbjct: 117 -EILLNQPRLNEPAGSRDKAMLELLYATGIRVSELISLDLDHVNLEMGYVRCFGKGSKER 175 Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 I+P+ +K + EY L + LF G+ + F + I++ R G+ Sbjct: 176 IIPIGSLAKKYVEEYLHRGRVRLIKSKGETALFVNHHGRRMTRQGFWKIIKKYAREAGIK 235 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T HTLRHSFATHLL NG DLRS+Q +LGH ++TTQIYT++ + E+Y +T Sbjct: 236 KDITPHTLRHSFATHLLENGADLRSVQEMLGHADITTTQIYTHLTRGR----LREVYSKT 291 Query: 318 HP 319 HP Sbjct: 292 HP 293 >gi|325956642|ref|YP_004292054.1| tyrosine recombinase xerD [Lactobacillus acidophilus 30SC] gi|325333207|gb|ADZ07115.1| tyrosine recombinase xerD [Lactobacillus acidophilus 30SC] Length = 301 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 101/312 (32%), Positives = 168/312 (53%), Gaps = 18/312 (5%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 EL + ++L+ ++ERGLS T+ +Y D ++L +F +E ++ +++ Sbjct: 5 ELQDQIDDYLRFSQVERGLSTNTISAYRQDLEEYL---SFIKKEGMSSWPT---EASDVD 58 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 AF++++R S+ R +S ++ F ++L ++ I + +L + KK LP AL+ + Sbjct: 59 AFLARQRDLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALSGE 118 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + N LL + + R+ AIL LY G+R+SE ++L Q+I +D +R+ G Sbjct: 119 EV-----NRLLEQPDVEQKLGLRDRAILETLYATGMRVSELINLELQDIHEDLGLIRVLG 173 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI---QLPLFRGIRGKPLNPGVFQRYIRQ 249 KG K R++P+ P I +Y L L LF RG L + I++ Sbjct: 174 KGSKERLIPISPVALHWIDKYQKQVRDPLILKSGKNDEHLFLNNRGGKLTRQAIWQMIKK 233 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 + G+ T HTLRH+FATHLL NG DLR +Q ILGH +STTQIYTN++ K+ Sbjct: 234 YCQMAGITKDVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKH---- 289 Query: 310 MMEIYDQTHPSI 321 ++++Y +THP + Sbjct: 290 ILQVYQKTHPRL 301 >gi|219669732|ref|YP_002460167.1| integrase family protein [Desulfitobacterium hafniense DCB-2] gi|219539992|gb|ACL21731.1| integrase family protein [Desulfitobacterium hafniense DCB-2] Length = 298 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 99/288 (34%), Positives = 152/288 (52%), Gaps = 14/288 (4%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 S+ TL +Y D QF +F A E+ T+ Q+ +R+F+ + + + +S+ R Sbjct: 20 SQHTLMAYHKDLIQFFVFAARELGEEPEKVTVDQVDIYIVRSFLGEMTDRGLERKSMARK 79 Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 LS +++F K+L + I ++ I + K LP L+ ++ + L+ T Sbjct: 80 LSALRAFFKFLCREGILQKNPIQRIATPKLGRKLPHFLSLEEL-----DRLIRTPDCATL 134 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211 + AR+ IL LLYG GLR+SE L Q+I S LR++GKG+K RIVPL +A Sbjct: 135 LGARDQVILELLYGSGLRVSELADLNRQDIDAGSSLLRVRGKGNKERIVPLTNYALEAAR 194 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 +Y ++ + Q L +G L+ +R + L GL H LRHSFAT Sbjct: 195 QY-----LEMREDKQEALLLNYQGTRLSVRSIRRILDGLALEAGLSQHLHPHMLRHSFAT 249 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HLL G DLRS+Q +LGH +LS+TQIYT++ + + E+Y+Q HP Sbjct: 250 HLLDGGADLRSVQELLGHAKLSSTQIYTHLTK----ERLREVYEQNHP 293 >gi|315640591|ref|ZP_07895697.1| integrase/recombinase XerD [Enterococcus italicus DSM 15952] gi|315483619|gb|EFU74109.1| integrase/recombinase XerD [Enterococcus italicus DSM 15952] Length = 296 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 104/304 (34%), Positives = 163/304 (53%), Gaps = 18/304 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L L IERGLS T SYE D +Q+ F+ + I + +Q+ I AF+ + Sbjct: 6 EDYLHFLTIERGLSLNTRSSYERDLKQYYTFV-----QTKQITSWQQIDRYTILAFLEQL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + ++ R +S ++ F ++L++ + T + ++ KK LP L+ K+ L+ Sbjct: 61 KKENKSTATITRMISSLRRFHQFLRQERHTDHDPMQHIDTPKKVQKLPDTLSLKEVERLI 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D T K + R+ AIL ++Y GLR+SE + L +I + + L+ GKGDK R Sbjct: 121 D-----TPDTRKILGIRDRAILEVMYATGLRVSELIQLQLSDIHLNMALLQTIGKGDKER 175 Query: 199 IVPLLPSVRKAILEYY--DLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 IVPL + LE Y D P ++ + LF GK L + ++++ R G Sbjct: 176 IVPL-GDMAIHWLEVYLSDARPILVSKQPNETALFVNSHGKKLTRQGIWKNLKEIVRAAG 234 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT++ K M ++Y Sbjct: 235 IHKTVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR----MTDVYK 290 Query: 316 QTHP 319 Q P Sbjct: 291 QYFP 294 >gi|239996020|ref|ZP_04716544.1| tyrosine recombinase [Alteromonas macleodii ATCC 27126] Length = 308 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 95/285 (33%), Positives = 153/285 (53%), Gaps = 10/285 (3%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +++ L +E+GLS T QSY D + IF + I + T QL + +++ R Sbjct: 21 GFIEMLWLEKGLSDHTQQSYRTDLTKLAIFSNNQGVKDIAVLTTEQL-----QDYLAYRH 75 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + + RS +R+LS I++F +L +++ +S + + N K +LP +L+E+Q L++ Sbjct: 76 DKGLSTRSTQRALSAIRAFFVFLISKQVRVDSPVSALSNPKTPKALPSSLSEQQVEDLLN 135 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 L I+ R+ ++L +LY GLR+SE + LT I Q +R+ GKG+K R+ Sbjct: 136 APLTDDP-----IECRDKSMLEVLYATGLRVSELIGLTMDQISLQQGVVRVVGKGNKERL 190 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 VPL + +L Y L +F RG+ + F I+ G+ Sbjct: 191 VPLGEDAIEWLLTYIKTARPILASKASDVVFLSKRGQKMTRQTFWHRIKYYAVKAGIEQH 250 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ Sbjct: 251 LSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATE 295 >gi|189423412|ref|YP_001950589.1| tyrosine recombinase XerC [Geobacter lovleyi SZ] gi|254799343|sp|B3E1H7|XERC_GEOLS RecName: Full=Tyrosine recombinase xerC gi|189419671|gb|ACD94069.1| tyrosine recombinase XerC [Geobacter lovleyi SZ] Length = 317 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 110/325 (33%), Positives = 166/325 (51%), Gaps = 23/325 (7%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 EL + +L+ L +R S T+ +Y D F F+ ++ +T+ L Sbjct: 3 ELAHQVARFLEFLATQRSASPHTIAAYRNDLNGFSSFVRSERGNTVSTKTVDHLLLRLYL 62 Query: 73 ----AFISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPR 127 + K++ S+ R L+ +++F +L + R++ L + K+ LP Sbjct: 63 ASLNGGLDKQQRAGYAKSSIGRKLAAVRAFFGWLVRTRQLEVNPAEL-IATPKREQRLPF 121 Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 LN Q +TL++ HT E AR++AIL LLY GLR+SE L ++ Sbjct: 122 HLNIDQTVTLIE-APGHTGQEQPTF-ARDTAILELLYSSGLRVSELTGLAVADLDRAAGM 179 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 +R+QGKG K RIVP+ + +A+ +Y L PLF G RG +N +R + Sbjct: 180 VRVQGKGGKERIVPVGSAALEALEQY---LAGRGQLADDAPLFLGCRGARIN----RRTV 232 Query: 248 RQL--RRYLGLPL--STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 QL R G+P S + HTLRH+FATH+L G DLRSIQ +LGH LSTTQ YT+V Sbjct: 233 AQLVKRWASGIPAFRSISPHTLRHTFATHMLEGGADLRSIQELLGHSSLSTTQKYTHV-- 290 Query: 304 KNGGDWMMEIYDQTHPSITQKDKKN 328 G D ++E+YD+ HP + D++N Sbjct: 291 --GLDRLLEVYDKAHPRARETDQQN 313 >gi|42519008|ref|NP_964938.1| integrase/recombinase XerD [Lactobacillus johnsonii NCC 533] gi|41583295|gb|AAS08904.1| integrase/recombinase XerD [Lactobacillus johnsonii NCC 533] Length = 296 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 95/308 (30%), Positives = 166/308 (53%), Gaps = 26/308 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L+ ++ERGLS T+ SY D ++L +L E T ++ Y + AF++ + Sbjct: 6 EDYLRFSQVERGLSPNTIVSYRTDLEEYLSYLEDQNE------TSWEVDYLVVDAFLATQ 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + S+ R +S ++ F ++L ++ I ++ + + K LP AL+E++ L+ Sbjct: 60 KDKGKATTSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEEVTKLL 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D +T + R+ A+L +LY G+R+SE ++L +I + +R+ GKG K R Sbjct: 120 DAPDTNTR-----LGIRDRAMLEVLYATGMRVSELINLRTGDIHSELKIIRVLGKGSKER 174 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-------LFRGIRGKPLNPGVFQRYIRQLR 251 +VP + + L + + D+ N L +F G L + I++ Sbjct: 175 LVP----ITEVALSWLEKYQKDVRENQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKYC 230 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 + +G+ + T HTLRH+FATHLL NG DLR +Q ILGH ++TTQIYTN+ K+ ++ Sbjct: 231 QLIGITKNVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKH----IL 286 Query: 312 EIYDQTHP 319 E+Y+Q HP Sbjct: 287 EVYNQAHP 294 >gi|118578727|ref|YP_899977.1| tyrosine recombinase XerC [Pelobacter propionicus DSM 2379] gi|166918893|sp|A1AKP9|XERC_PELPD RecName: Full=Tyrosine recombinase xerC gi|118501437|gb|ABK97919.1| tyrosine recombinase XerC [Pelobacter propionicus DSM 2379] Length = 302 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 108/306 (35%), Positives = 156/306 (50%), Gaps = 16/306 (5%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 L+++ + + +LE ER LS TL +Y+ D RQF F+A + T + + L +R Sbjct: 4 LMEQIRAFRLHLETERNLSPHTLAAYDRDLRQFAAFVAAEMGDSATAEDVDHLL---LRR 60 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 ++++ TQ I S R L+ I+SF ++L + + + + K+ LP L+ Q Sbjct: 61 YLAQLGTQ-IRKSSQGRKLAAIRSFYRHLLRLGSVSRNPAELIATPKREQRLPFHLDIDQ 119 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 A L+ T E + R+ AIL LY GLR+SE L ++I LR+ GK Sbjct: 120 A-----TALMETPTEEENYGLRDRAILETLYSSGLRVSELTGLAIRDINLAGGMLRVMGK 174 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 G K RIVPL +AI EY D PLF RG +N R + Sbjct: 175 GGKERIVPLGSRAVRAIQEYLDSRG---GGTATAPLFLNSRGDRINRRSVARIVDAHVHE 231 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 + + HTLRH+FATH+L G DLR+IQ +LGH LSTTQ YT+V+ D +ME+ Sbjct: 232 IAAFKHISPHTLRHTFATHMLEGGADLRAIQELLGHASLSTTQKYTHVSL----DRLMEV 287 Query: 314 YDQTHP 319 YD+ HP Sbjct: 288 YDKAHP 293 >gi|300113125|ref|YP_003759700.1| tyrosine recombinase XerC [Nitrosococcus watsonii C-113] gi|299539062|gb|ADJ27379.1| tyrosine recombinase XerC [Nitrosococcus watsonii C-113] Length = 300 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 102/318 (32%), Positives = 168/318 (52%), Gaps = 30/318 (9%) Query: 16 KERQNWLQ----NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71 +ERQ W+Q +L+ ERGLS T+ SY D + + F + I + L ++ Sbjct: 3 EERQIWIQKFLLHLQYERGLSPQTVVSYRRDLAKVMAFCG-----RNGIGNWQALDAQKV 57 Query: 72 RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131 RA ++ + RS++R LS ++SF YL++ I + + + +LP L+ Sbjct: 58 RALVAAYHQTGLSGRSIQRLLSALRSFYVYLQRENIVDHNPAQGISAPRGKRALPPTLDV 117 Query: 132 KQALTLVD-----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 QA L++ ++LL R+ AIL L Y GLR++E + L + D + Sbjct: 118 DQAAQLLNTKPCGDLLL-----------RDQAILELFYSSGLRLAELVGLNLSALDLDTA 166 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 +R+ GKG K R VPL + A+L + + ++ + Q +F RG+ L+P Q+ Sbjct: 167 LVRVVGKGAKTREVPLGRRAKAALLAWLPIRAGWISQS-QEAVFVTRRGRRLSPRAVQKR 225 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 +R G ++ H LRH+FA+HLL + GDLR++Q +LGH +STTQIYT+++ ++ Sbjct: 226 LRLWGLRQGFDVAIHPHRLRHAFASHLLESSGDLRAVQELLGHADISTTQIYTHLDFQH- 284 Query: 307 GDWMMEIYDQTHPSITQK 324 + +IYDQTHP +K Sbjct: 285 ---LAKIYDQTHPRARKK 299 >gi|329894263|ref|ZP_08270149.1| Site-specific recombinase XerD [gamma proteobacterium IMCC3088] gi|328923194|gb|EGG30516.1| Site-specific recombinase XerD [gamma proteobacterium IMCC3088] Length = 298 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 96/302 (31%), Positives = 162/302 (53%), Gaps = 14/302 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + ++ L +ERGLS +L +Y D + +L ++ + + +RQ +++ ++ R Sbjct: 8 EQFIDALWMERGLSDNSLSAYRTDLAHYQAWL----DKAVAGRQLRQADGADLQRYLGLR 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q RS R LS ++SF +Y ++ ++ + K +LP++L+E+ V Sbjct: 64 LKQGRSPRSTARLLSCLRSFYRYALRQNWCVTDPTADVESPKMGRALPKSLSEQD----V 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D +L + E+ I+ R+ A+L LLY CGLR+SE + LT NI +Q +R+ GKG K R Sbjct: 120 DALLSAPNVESP-IELRDKAMLELLYACGLRVSELVGLTQLNISVNQGVVRVLGKGSKER 178 Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ + Y + P + LF IRG+ + F I+ + G+ Sbjct: 179 LVPMGEEALDWLTRYLREGRPLIVEKKANDWLFPSIRGQGMTRQTFWHRIKLYAKRAGIK 238 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + HTLRH+FATHLL++G DLR +Q +LGH L+TTQIYT+V + + +++ + Sbjct: 239 APLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLTTTQIYTHVAQQR----LQDLHAKH 294 Query: 318 HP 319 HP Sbjct: 295 HP 296 >gi|224370397|ref|YP_002604561.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2] gi|223693114|gb|ACN16397.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2] Length = 295 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 97/301 (32%), Positives = 161/301 (53%), Gaps = 17/301 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 ++ +L +ERGL++ +L SY D F FL E I + Q+ I A++ Sbjct: 8 YMAHLTLERGLAQNSLTSYAMDLATFADFL-----ETNQISALDQVDTVVILAWLVHLEA 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQALTLVD 139 + + RS R L ++ F ++L +T SN L + ++ K+ + LPR L++ Q Sbjct: 63 KGLSPRSRARHLIAVRGFYRFLALENLT-RSNPLRLIDIPKAGTRLPRFLSQDQV----- 116 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 LL T RN+A+L +LYG GLR+SE + L + + +R+ GKG + RI Sbjct: 117 TALLEMPDRTTHRGLRNAAMLEILYGAGLRVSELVGLKTEQVDLVACFVRLFGKGSRERI 176 Query: 200 VPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VP R+ +E+ + P+ L N LF G P+ F + +++ G+ + Sbjct: 177 VPFGSHARQRTMEWLEWGRPWMLKKNASRYLFVARAGNPMTRQGFWKLLKKYALGAGISI 236 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + HTLRHSFATHLL G DLRS+Q++LGH +++TQIYT+V+ + ++++++ + H Sbjct: 237 KVSPHTLRHSFATHLLEGGADLRSVQTMLGHADIASTQIYTHVSRQ----YLVDMHKKYH 292 Query: 319 P 319 P Sbjct: 293 P 293 >gi|326692503|ref|ZP_08229508.1| tyrosine recombinase XerD [Leuconostoc argentinum KCTC 3773] Length = 298 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 97/301 (32%), Positives = 160/301 (53%), Gaps = 16/301 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L + IERGLS T+ SY D QF A+ T EK+T++ + + + A++++ R Sbjct: 11 DYLHYIRIERGLSDNTINSYRQDLTQFG---AYLTAEKLTLEAV---DHVVVLAWLNQLR 64 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + S+ R ++ ++ F YL + KI + + +++ KK+ LP L+ + Sbjct: 65 LVGKSNNSVIRMVTSLRKFFGYLAQEKIVLPNPMRDIQPPKKATHLPAVLSVAEI----- 119 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + LL +T +D RN ++ ++Y GLR+SE ++L ++ ++ GKGDK RI Sbjct: 120 DALLAVPTDTTPLDIRNRTLIEVMYATGLRVSELVNLKLSDLHLQLGLIQTIGKGDKERI 179 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +P+ + Y+ L P +F RG L + I++L G+ Sbjct: 180 IPIGEVAADWLTRYFASSRLALLKGKASPYVFLNDRGGQLTRQGVWKIIKKLVVEAGITK 239 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + HTLRHSFATH+L NG DLR +Q +LGH +STTQIYT+++ K + E+YDQ H Sbjct: 240 DVSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISKKR----LSEVYDQYH 295 Query: 319 P 319 P Sbjct: 296 P 296 >gi|221195834|ref|ZP_03568887.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626] gi|221184308|gb|EEE16702.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626] Length = 311 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 97/318 (30%), Positives = 167/318 (52%), Gaps = 16/318 (5%) Query: 12 FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71 +L++ + +L + +ERGLS TL +YE D + +L+ I ++ + Sbjct: 1 MDLVQALKEFLAYVAVERGLSHNTLDAYERDLNGYSDWLS-----SCGIHNPCAVTQQIL 55 Query: 72 RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131 +I++ R + S++R + I++F ++L +I S ++ + + LP ++ Sbjct: 56 ETYIAELREIGLAPASVERHTAAIRNFHRFLVAEQICATSPADDLSSTARPLRLPDVISR 115 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 ++A L+D E R+ AIL +LYGCGLR+SE L + ++ D+ LR+ Sbjct: 116 EKAAELLDQPF-----ERSPRGIRDKAILEVLYGCGLRVSEVSGLEVRGVLLDEELLRVF 170 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQL 250 GKG K R+VP+ + ++A+ EY + ++ Q P +F RG L+ + Sbjct: 171 GKGSKERVVPIFGTAQEALREYLEGARGAFLIHGQSPYVFLNRRGGRLSRQWIHTSVAAY 230 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 R +G+ + HTLRHSFATHLL G DLRS+Q +LGH +STTQ+YT+V+ + + Sbjct: 231 GRAVGIE-NLHPHTLRHSFATHLLEGGADLRSVQELLGHVDISTTQLYTHVDRSH----V 285 Query: 311 MEIYDQTHPSITQKDKKN 328 E+Y HP + +K+ Sbjct: 286 REVYLSAHPRAHEAFRKD 303 >gi|206889353|ref|YP_002249196.1| tyrosine recombinase XerC [Thermodesulfovibrio yellowstonii DSM 11347] gi|254799359|sp|B5YFZ8|XERC_THEYD RecName: Full=Tyrosine recombinase xerC gi|206741291|gb|ACI20348.1| tyrosine recombinase XerC [Thermodesulfovibrio yellowstonii DSM 11347] Length = 301 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 96/305 (31%), Positives = 165/305 (54%), Gaps = 24/305 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 N+L ++++++G S TL++Y+ D +F F E ++ IR FIS++ Sbjct: 10 NFLNHIKLQKGDSSHTLRAYKNDLEEFFNFAKVEPE---------KVEPIVIRGFISEQI 60 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + ++ R LS ++SF YL + + ++K +LP+ L A LV+ Sbjct: 61 LKGKSKTTVARKLSTLRSFFSYLYSEGFIKINPARVVSSVKIKRALPKFLTVDDAFKLVE 120 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 E K+ R+ AIL L Y G+R+SE L +++ + ++++GKG K RI Sbjct: 121 -----APSEDKFTVQRDKAILELFYSSGIRVSELCGLNLEDLDLKEGLIKVRGKGKKERI 175 Query: 200 VPLLPSVRKAILEYYDLCPF-----DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 VP+ ++A+ +Y + L+L+ + PLF RG+ ++ +R + + +++ Sbjct: 176 VPVGQKAKEALKKYLAIRQILRIKKKLSLD-ETPLFINNRGQRISDRQVRRIVEKYAKFI 234 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ HTLRH+FA+HLL G DLR IQ +LGH LSTTQIYT+V+ K+ ++E+Y Sbjct: 235 GVLEKIGPHTLRHTFASHLLMEGADLRVIQELLGHASLSTTQIYTHVDLKH----LIEVY 290 Query: 315 DQTHP 319 D++HP Sbjct: 291 DKSHP 295 >gi|90961911|ref|YP_535827.1| integrase/recombinase XerD/RipX family [Lactobacillus salivarius UCC118] gi|90821105|gb|ABD99744.1| Integrase/recombinase, XerD/RipX family [Lactobacillus salivarius UCC118] Length = 297 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 103/302 (34%), Positives = 166/302 (54%), Gaps = 17/302 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L L++ERGLS+ T+ SY D F +FL + E +I + +Q++ I ++ + Sbjct: 9 DYLHYLKVERGLSENTINSYGID---FKLFLEYLRENEIP--SFKQVNKEVIVNYMQSEK 63 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + S+ RS+S ++ F +YL + KI + +L + KK LP+ L +++ Sbjct: 64 NNNKANSSILRSVSSLRKFFQYLAQEKIIEKDPMLLIDTPKKKQHLPQVLTKEEV----- 118 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 LL + + + + R+ A+L L+Y GLRISE ++L +++ TL+ GKG K RI Sbjct: 119 EKLLRSPNTGQVLGLRDRAMLELMYATGLRISEIINLKLEDLHLTMGTLQTLGKGHKERI 178 Query: 200 VPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYLGLP 257 VP+ K + Y + P L LF G L GV++ ++R+ G+ Sbjct: 179 VPVGDEAIKWVNRYLEEARPKLLKQKRSNYLFLNFHGNNLTRQGVWKNLKAEVRK-AGIQ 237 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + T HTLRHSFATH+L NG DLR +Q +LGH +STTQIYT++++K D IY++ Sbjct: 238 KNITPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHLSNKQLAD----IYNRA 293 Query: 318 HP 319 HP Sbjct: 294 HP 295 >gi|300812172|ref|ZP_07092616.1| tyrosine recombinase XerD [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496857|gb|EFK31935.1| tyrosine recombinase XerD [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 301 Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 102/320 (31%), Positives = 168/320 (52%), Gaps = 35/320 (10%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L ++ ++L+ +IERGLS T+ +Y+ D L FLAF EE++ L EI Sbjct: 6 KLAEQINDYLRYSQIERGLSPNTIAAYKQD---LLEFLAFVKEEQMPAWP---LEAVEID 59 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 AF++K R + S+ R +S + F ++L ++++ + + K+ +P AL E Sbjct: 60 AFLAKERDLGKANSSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEA 119 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + L++ L T + R+ A++ LLY G+R+SEA++L ++ D +++ G Sbjct: 120 EVGKLLEQPDLTTD-----LGIRDRALVELLYATGMRVSEAVNLQLADVHADLQLIKVLG 174 Query: 193 KGDKIRIVPL-----------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241 KG K R++P+ LP + +L+ + LF RG L Sbjct: 175 KGSKERLIPVSALALDWIKRYLPVRDQQLLKRGKSSDY---------LFLNSRGGQLTRQ 225 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + I++ + G+ T HTLRHSFATHLL +G DLR +Q ILGH +STTQIYTN+ Sbjct: 226 AVWQKIKKYCQQAGIAKDVTPHTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYTNL 285 Query: 302 NSKNGGDWMMEIYDQTHPSI 321 K+ ++++Y +THP I Sbjct: 286 TQKH----ILDVYQKTHPRI 301 >gi|268319602|ref|YP_003293258.1| tyrosine recombinase xerD [Lactobacillus johnsonii FI9785] gi|262397977|emb|CAX66991.1| tyrosine recombinase xerD [Lactobacillus johnsonii FI9785] Length = 302 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 94/308 (30%), Positives = 166/308 (53%), Gaps = 26/308 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L+ ++ERGLS T+ SY D ++L +L E+ ++ Y + AF++ + Sbjct: 12 EDYLRFSQVERGLSPNTIVSYRTDLEEYLSYLEDQNEKSW------EVDYLVVDAFLATQ 65 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + S+ R +S ++ F ++L ++ I ++ + + K LP AL+E++ L+ Sbjct: 66 KDKGKATTSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEEVTKLL 125 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D +T + R+ A+L +LY G+R+SE ++L +I + +R+ GKG K R Sbjct: 126 DAPDTNTR-----LGIRDRAMLEVLYATGMRVSELINLRTGDIHSELKIIRVLGKGSKER 180 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-------LFRGIRGKPLNPGVFQRYIRQLR 251 +VP + + L + + D+ N L +F G L + I++ Sbjct: 181 LVP----ITEVALSWLEKYQKDVRENQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKYC 236 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 + +G+ + T HTLRH+FATHLL NG DLR +Q ILGH ++TTQIYTN+ K+ ++ Sbjct: 237 QLIGITKNVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKH----IL 292 Query: 312 EIYDQTHP 319 E+Y+Q HP Sbjct: 293 EVYNQAHP 300 >gi|329895691|ref|ZP_08271114.1| site-specific tyrosine recombinase XerC [gamma proteobacterium IMCC3088] gi|328922209|gb|EGG29563.1| site-specific tyrosine recombinase XerC [gamma proteobacterium IMCC3088] Length = 306 Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 91/289 (31%), Positives = 153/289 (52%), Gaps = 15/289 (5%) Query: 31 LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90 LS TL+ Y+ D F+ L E I L +R++ + R + + S+ R Sbjct: 24 LSAHTLKHYQRDIDSFVAQL-----EPSDADNIHSLKEYHVRSWANSLRRKGLAPASIAR 78 Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150 LS ++S+ ++ KR + + +R K++ LP+A++ Q ++ L+ S Sbjct: 79 HLSSVRSWFQFCAKRFGLSHNPAAGVRAPKQARKLPKAMDADQ----INQCLVAPSESD- 133 Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210 +D R+ A+ LLY CGLR+SE SLT I Q + + GKG+K R +P+ A+ Sbjct: 134 -LDTRDLAMAELLYSCGLRLSELQSLTLAQIDIQQRLVTVTGKGNKTRQIPIGGVALDAL 192 Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 ++ P +L P+F +GK L+P Q + +L ++ +P+ H +RHSFA Sbjct: 193 KKWMRQHPLAGDLQASTPVFTTRQGKALSPRSIQTRLDRLAKHNAIPVHVHPHMMRHSFA 252 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 +HLL + GDLR++Q +LGH +STTQIYT+++ ++ + + YD HP Sbjct: 253 SHLLESSGDLRAVQELLGHSNISTTQIYTHLDFQH----LAKTYDAAHP 297 >gi|319954373|ref|YP_004165640.1| tyrosine recombinase xerc [Cellulophaga algicola DSM 14237] gi|319423033|gb|ADV50142.1| Tyrosine recombinase xerC [Cellulophaga algicola DSM 14237] Length = 298 Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 103/307 (33%), Positives = 166/307 (54%), Gaps = 19/307 (6%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 L + QN+L+ IERGLS+ ++ SY D ++ L+FL KI I Q+ ++ F Sbjct: 7 LNDYQNYLK---IERGLSENSISSYSLDIQKLLLFLE---TNKIVTSPI-QIDKHIVQQF 59 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 I + ++ + RS R +SG+KSF YL ++ + + + K LP L+E + Sbjct: 60 IYEI-SKDVNPRSQARIISGLKSFFNYLVFEDYRIDNPLELIESPKTGRKLPDTLSEDEI 118 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 L+ + L T RN AIL LYGCG+R+SE ++L ++ ++ +++ GKG Sbjct: 119 NDLIAAINLSTPE-----GERNRAILETLYGCGVRVSELINLKISDLFFEEDFIKVTGKG 173 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 DK R VP+ +K I Y + LN+ + LF RG+ L + I+QL Sbjct: 174 DKQRFVPISDINKKYINLYKNEIRVHLNIQKGFEDILFLNRRGRQLTRAMIFTIIKQLAI 233 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 + L + + HT RHSFATHLL NG DLR+IQ +LGH ++TT++Y +V+ + + + Sbjct: 234 KIDLKKTISPHTFRHSFATHLLENGADLRAIQQMLGHESITTTEVYMHVDRSH----LAQ 289 Query: 313 IYDQTHP 319 + ++ HP Sbjct: 290 VLNEFHP 296 >gi|325684289|gb|EGD26462.1| integrase/recombinase XerD [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 301 Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 102/320 (31%), Positives = 168/320 (52%), Gaps = 35/320 (10%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L ++ ++L+ +IERGLS T+ +Y D L FLAF EE++ L EI Sbjct: 6 KLAEQINDYLRYSQIERGLSPNTIAAYHQD---LLEFLAFVKEEQMPAWP---LEAVEID 59 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 AF++K R + S+ R +S + F ++L ++++ + + K+ +P AL E Sbjct: 60 AFLAKERDLGKANSSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEA 119 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + L++ L T + R+ A++ LLY G+R+SEA++L ++ D +++ G Sbjct: 120 EVGKLLEQPDLTTD-----LGIRDRALVELLYATGIRVSEAVNLKLADVHADLQLIKVLG 174 Query: 193 KGDKIRIVPL-----------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241 KG+K R++P+ LP + +L+ + LF RG L Sbjct: 175 KGNKERLIPVSALALDWIKRYLPVRDQQLLKRGKSSDY---------LFLNSRGGQLTRQ 225 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + I++ + G+ T HTLRHSFATHLL +G DLR +Q ILGH +STTQIYTN+ Sbjct: 226 AVWQKIKKYCQQAGIAKDVTPHTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYTNL 285 Query: 302 NSKNGGDWMMEIYDQTHPSI 321 K+ ++++Y +THP I Sbjct: 286 TQKH----ILDVYQKTHPRI 301 >gi|313123528|ref|YP_004033787.1| tyrosine recombinase xerd subunit [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280091|gb|ADQ60810.1| Tyrosine recombinase XerD subunit [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 301 Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 102/320 (31%), Positives = 167/320 (52%), Gaps = 35/320 (10%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L ++ ++L+ +IERGLS T+ +Y D L FLAF EE++ L EI Sbjct: 6 KLAEQINDYLRYSQIERGLSPNTIAAYHQD---LLEFLAFVKEEQMPAWP---LEAVEID 59 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 AF++K R + S+ R +S + F ++L ++++ + + K+ +P AL E Sbjct: 60 AFLAKERDLGKANSSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEA 119 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + L++ L T + R+ A++ LLY G+R+SEA++L ++ D +++ G Sbjct: 120 EVGKLLEQPDLTTD-----LGIRDRALVELLYATGMRVSEAVNLKLADVHADLQLIKVLG 174 Query: 193 KGDKIRIVPL-----------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241 KG K R++P+ LP + +L+ + LF RG L Sbjct: 175 KGSKERLIPVSALALDWIKRYLPVRDQQLLKRGKSSDY---------LFLNSRGGQLTRQ 225 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + I++ + G+ T HTLRHSFATHLL +G DLR +Q ILGH +STTQIYTN+ Sbjct: 226 AVWQKIKKYCQQAGIAKDVTPHTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYTNL 285 Query: 302 NSKNGGDWMMEIYDQTHPSI 321 K+ ++++Y +THP I Sbjct: 286 TQKH----ILDVYQKTHPRI 301 >gi|241896013|ref|ZP_04783309.1| integrase/recombinase [Weissella paramesenteroides ATCC 33313] gi|241870744|gb|EER74495.1| integrase/recombinase [Weissella paramesenteroides ATCC 33313] Length = 308 Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 99/314 (31%), Positives = 160/314 (50%), Gaps = 13/314 (4%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 E + +Q +L L IER S T ++YE D +FL FL+ K + + ++ ++R Sbjct: 5 EAERAKQLFLDYLRIERQYSLETQKAYEGDIAEFLTFLSGTQATKSIV--LSNITSFDVR 62 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F+S+ + G R++ R +S ++SF ++L ++ E+ + + K LPR +K Sbjct: 63 VFLSELYEKGDGSRTIARKVSSLRSFYRFLINNEMVAENPFVGIVLKKPGQHLPRYFYQK 122 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + + D V+ S + RN +L +LYG G R+SE ++T QN+ + I G Sbjct: 123 ELTKMFDVVMTDQS----ALGLRNHLLLEMLYGTGARVSEIANMTLQNVDSHARVVTITG 178 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 KG+K RIVP A+ +Y L + LF RG P+ + ++Q Sbjct: 179 KGNKTRIVPFGRYAADALAKYLKTGRPVLASKQADTSNKLFLNQRGAPVTTAGIEYILKQ 238 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 + + GL TAH RH+FAT LL+N DLR++Q +LGH LSTTQIYT+V + D Sbjct: 239 IGKKSGLTQEVTAHMFRHTFATDLLNNQADLRTVQQLLGHSSLSTTQIYTHVTT----DA 294 Query: 310 MMEIYDQTHPSITQ 323 + + Y P ++ Sbjct: 295 LQKSYRNFFPRASE 308 >gi|308274298|emb|CBX30897.1| Tyrosine recombinase xerD [uncultured Desulfobacterium sp.] Length = 298 Score = 149 bits (375), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 107/303 (35%), Positives = 158/303 (52%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +L L +E+GLSK TL+SY D ++ FL K I+ I + I I Sbjct: 9 DQYLNYLVVEKGLSKKTLESYGSDIATYIDFLG-----KKGIKDISEADTPTILMHIIAL 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN-SLPRALNEKQALTL 137 R + RS R L ++ F K+L + K+ T ++ + +L KS LP L + + +L Sbjct: 64 REDGLKARSRARHLVTLRGFYKFLVREKLIT-TDPTRVIDLPKSGFYLPNVLTQDEVKSL 122 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 L +K R+SA++ LLY GLR+SE + L ++ D +R+ GKG K Sbjct: 123 -----LSVPDVSKPAGLRDSAMIELLYAAGLRVSELVGLKLFDVNMDACFVRVFGKGSKE 177 Query: 198 RIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 RIVP+ ++ + EY + P L N+ LF G GKPL F + I++ + Sbjct: 178 RIVPIGTFAKEKVSEYINTARPLILKNNMSNFLFVGRGGKPLTRQGFWKIIKRYSTLGKI 237 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + T H+LRHSFATHLL G DLRS+Q +LGH +STTQIYT+V D + +I+ + Sbjct: 238 TKTITPHSLRHSFATHLLEGGADLRSVQLMLGHVDISTTQIYTHVVR----DHLKKIHSK 293 Query: 317 THP 319 HP Sbjct: 294 YHP 296 >gi|238855202|ref|ZP_04645521.1| tyrosine recombinase XerD [Lactobacillus jensenii 269-3] gi|260664565|ref|ZP_05865417.1| tyrosine recombinase XerD [Lactobacillus jensenii SJ-7A-US] gi|282932504|ref|ZP_06337929.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1] gi|313471969|ref|ZP_07812461.1| tyrosine recombinase XerD [Lactobacillus jensenii 1153] gi|238832094|gb|EEQ24412.1| tyrosine recombinase XerD [Lactobacillus jensenii 269-3] gi|260561630|gb|EEX27602.1| tyrosine recombinase XerD [Lactobacillus jensenii SJ-7A-US] gi|281303453|gb|EFA95630.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1] gi|313449040|gb|EFR61308.1| tyrosine recombinase XerD [Lactobacillus jensenii 1153] Length = 300 Score = 149 bits (375), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 108/331 (32%), Positives = 172/331 (51%), Gaps = 45/331 (13%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 M+ NNL ++ F L+ +ERGLSK T+ SY+ D QF+ +L +EKI+ Sbjct: 1 MKKNNLDQVADF---------LRFCSLERGLSKNTVNSYQLDLNQFVEYL---DKEKISD 48 Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 L I ++++K+R + ++ R ++ ++ F +YL ++ I ++ + K Sbjct: 49 WPEDPLV---IDSYLAKQRDEGKKTSTISRGITTLRRFYRYLLRQHILVVDPLIQIDTPK 105 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 + LP AL++K+ L+ L+T+ R+ AIL LLY G+R+SE ++L + Sbjct: 106 QEKRLPLALSQKEVSELLAQPNLNTA-----TGLRDRAILELLYATGMRVSELINLKETD 160 Query: 181 IMDDQSTLRIQGKGDKIRIVPL-----------LPSVRK-AILEYYDLCPFDLNLNIQLP 228 + D +R+ GKG K R+VP+ L VR A+L+ C F Sbjct: 161 LHTDLKIIRVLGKGSKERLVPVTDFALNWVDKYLKEVRDPALLKKGVACDF--------- 211 Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288 LF R L + I++ + + T HTLRH+FATHLL NG DLR +Q ILG Sbjct: 212 LFLNNRAGQLTRQAVWQSIKKYSKLARIDKDITPHTLRHTFATHLLENGADLRVVQEILG 271 Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H +STTQIYTN++ K+ + ++Y +THP Sbjct: 272 HSDISTTQIYTNLSQKH----IFDVYLKTHP 298 >gi|300214635|gb|ADJ79051.1| Integrase/recombinase, XerD/RipX family [Lactobacillus salivarius CECT 5713] Length = 297 Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 102/302 (33%), Positives = 165/302 (54%), Gaps = 17/302 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L L++ERGLS+ T+ SY D + FL +L + I + +Q++ I ++ + Sbjct: 9 DYLHYLKVERGLSENTINSYGIDLKLFLEYL-----RENEIPSFKQVNKEVIVNYMQSEK 63 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + S+ RS+S ++ F +YL + KI + +L + KK LP+ L +++ Sbjct: 64 NNNKANSSILRSVSSLRKFFQYLAQEKIIEKDPMLLIDTPKKKQHLPQVLTKEEV----- 118 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 LL + + + + R+ A+L L+Y GLRISE ++L +++ TL+ GKG K RI Sbjct: 119 EKLLRSPNTGQVLGLRDRAMLELMYATGLRISEIINLKLEDLHLTMGTLQTLGKGHKERI 178 Query: 200 VPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYLGLP 257 VP+ K + Y + P L LF G L GV++ ++R+ G+ Sbjct: 179 VPVGDEAIKWVNRYLEEARPKLLKQKRSNYLFLNFHGNNLTRQGVWKNLKAEVRK-AGIQ 237 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + T HTLRHSFATH+L NG DLR +Q +LGH +STTQIYT++++K D IY++ Sbjct: 238 KNITPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHLSNKQLAD----IYNRA 293 Query: 318 HP 319 HP Sbjct: 294 HP 295 >gi|221310269|ref|ZP_03592116.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp. subtilis str. 168] gi|221314592|ref|ZP_03596397.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319515|ref|ZP_03600809.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp. subtilis str. JH642] gi|221323791|ref|ZP_03605085.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp. subtilis str. SMY] gi|255767509|ref|NP_390232.2| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp. subtilis str. 168] gi|321311827|ref|YP_004204114.1| site-specific tyrosine recombinase XerD [Bacillus subtilis BSn5] gi|251757430|sp|P46352|XERD_BACSU RecName: Full=Tyrosine recombinase xerD gi|225185137|emb|CAB14283.2| site-specific tyrosine recombinase for chromosome partitioning [Bacillus subtilis subsp. subtilis str. 168] gi|320018101|gb|ADV93087.1| site-specific tyrosine recombinase XerD [Bacillus subtilis BSn5] Length = 296 Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 98/302 (32%), Positives = 159/302 (52%), Gaps = 14/302 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++++ + +ERGLS+ T+ SYE D + + ++L E + + ++ I ++ Sbjct: 6 KDFIHYVMVERGLSQNTIVSYERDLKSYSLYLT----ETLHVTDWNHVTRIHIIQYLKHL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + ++ R L+ I+SF ++L + K+T + +++ K +LP+ L AL V Sbjct: 62 KDSGKSGKTSARHLASIRSFHQFLLREKVTDKDPSVHIETQKTERALPKVL----ALNEV 117 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + LL T T R+ A+L LLY G+R+SE + L ++ +R GKG K R Sbjct: 118 ER-LLDTPKLTSPFGYRDKAMLELLYATGIRVSEMIELKTADVHLSMGFIRCFGKGRKER 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 IVP+ + AI EY L N+ LF GK ++ F + ++++ G+ Sbjct: 177 IVPIGEAAASAIEEYMTKARGKLLKNNVSDALFLNHHGKQISRQGFWKNLKKIALEAGIK 236 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V + ++Y Q Sbjct: 237 KELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTR----LKDVYKQF 292 Query: 318 HP 319 HP Sbjct: 293 HP 294 >gi|104773902|ref|YP_618882.1| site-specific recombinase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422983|emb|CAI97665.1| Site-specific recombinase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 298 Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 102/320 (31%), Positives = 168/320 (52%), Gaps = 35/320 (10%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L ++ ++L+ +IERGLS T+ +Y+ D L FLAF EE++ L EI Sbjct: 3 KLAEQINDYLRYSQIERGLSPNTIAAYQQD---LLEFLAFVKEEQMPAWP---LEAVEID 56 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 AF++K R + S+ R +S + F ++L ++++ + + K+ +P AL E Sbjct: 57 AFLAKERDLGKANSSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEA 116 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + L++ L T + R+ A+L LLY G+R+SEA++L ++ + +++ G Sbjct: 117 EVGKLLEQPDLTTD-----LGIRDRALLELLYATGMRVSEAVNLQLADVHANLQLIKVLG 171 Query: 193 KGDKIRIVPL-----------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241 KG K R++P+ LP + +L+ + LF RG L Sbjct: 172 KGSKERLIPVSALALDWIKRYLPVRDQQLLKRGKSSDY---------LFLNSRGGQLTRQ 222 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + I++ + G+ T HTLRHSFATHLL +G DLR +Q ILGH +STTQIYTN+ Sbjct: 223 AVWQKIKKYCQQAGIAKDVTPHTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYTNL 282 Query: 302 NSKNGGDWMMEIYDQTHPSI 321 K+ ++++Y +THP I Sbjct: 283 TQKH----ILDVYQKTHPRI 298 >gi|328957336|ref|YP_004374722.1| site-specific tyrosine recombinase XerD [Carnobacterium sp. 17-4] gi|328673660|gb|AEB29706.1| site-specific tyrosine recombinase XerD [Carnobacterium sp. 17-4] Length = 299 Score = 148 bits (374), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 96/303 (31%), Positives = 163/303 (53%), Gaps = 16/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +++ L IERGLSK T++SY+ D RQ+L+F+ E+I + Q+ + +F+ Sbjct: 9 EEYIRFLTIERGLSKNTIESYKRDIRQYLVFI-----EQIKVTKWDQIDRYTVLSFLQDL 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + ++ ++ R +S ++ F ++LK+ +I+ +L++ KK+ LP+ L+ K+ Sbjct: 64 KEKEKSAGTIIRMISCLRQFHQFLKQEQISQSDPMLHIDTPKKAQKLPKVLSIKEV---- 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + L+ T + + + R+ A+L ++Y GLR+SE L ++ ++ GKGDK R Sbjct: 120 -DRLIETPNTGETLGLRDRAMLEVMYATGLRVSELTELKLDDLHLSLGLIQTIGKGDKER 178 Query: 199 IVPLLPSVRKAILEY--YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 I+PL I +Y Y + + LF G+ L + ++ + + G+ Sbjct: 179 IIPLGDLAITWIEKYLRYSRTKLEKDGQRSPHLFLNHHGRKLTRQGVWKNLKIIVKKAGI 238 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 T HTLRHSFATHLL NG DLR +Q +LGH +STTQIYT++ K M +Y Sbjct: 239 EKEVTPHTLRHSFATHLLENGADLRVVQELLGHSDISTTQIYTHITKKR----MSSVYKT 294 Query: 317 THP 319 HP Sbjct: 295 YHP 297 >gi|301299326|ref|ZP_07205611.1| tyrosine recombinase XerD [Lactobacillus salivarius ACS-116-V-Col5a] gi|300853066|gb|EFK80665.1| tyrosine recombinase XerD [Lactobacillus salivarius ACS-116-V-Col5a] Length = 290 Score = 148 bits (374), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 102/302 (33%), Positives = 165/302 (54%), Gaps = 17/302 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L L++ERGLS+ T+ SY D + FL +L + I + +Q++ I ++ + Sbjct: 2 DYLHYLKVERGLSENTINSYGIDLKLFLEYL-----RENEIPSFKQVNKEVIVNYMQSEK 56 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + S+ RS+S ++ F +YL + KI + +L + KK LP+ L +++ Sbjct: 57 NNNKANSSILRSVSSLRKFFQYLAQEKIIEKDPMLLIDTPKKKQHLPQVLTKEEV----- 111 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 LL + + + + R+ A+L L+Y GLRISE ++L +++ TL+ GKG K RI Sbjct: 112 EKLLRSPNTGQVLGLRDRAMLELMYATGLRISEIINLKLEDLHLTMGTLQTLGKGHKERI 171 Query: 200 VPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYLGLP 257 VP+ K + Y + P L LF G L GV++ ++R+ G+ Sbjct: 172 VPVGDEAIKWVNRYLEEARPKLLKQKRSNYLFLNFHGNNLTRQGVWKNLKAEVRK-AGIQ 230 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + T HTLRHSFATH+L NG DLR +Q +LGH +STTQIYT++++K D IY++ Sbjct: 231 KNITPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHLSNKQLAD----IYNRA 286 Query: 318 HP 319 HP Sbjct: 287 HP 288 >gi|110835195|ref|YP_694054.1| integrase/recombinase XerC [Alcanivorax borkumensis SK2] gi|122959294|sp|Q0VM16|XERC_ALCBS RecName: Full=Tyrosine recombinase xerC gi|110648306|emb|CAL17782.1| integrase/recombinase XerC [Alcanivorax borkumensis SK2] Length = 307 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 97/309 (31%), Positives = 165/309 (53%), Gaps = 16/309 (5%) Query: 11 SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70 S L+ +L +L ER LS T+ Y+ D + L + +T+ +R L+ Sbjct: 5 SHNTLQTVNTFLTHLASERRLSPHTVNGYQRDLIEARTLLGSQPWDTLTVHDMRSLA--- 61 Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 S R K G ++++R LS +++F +YL + + ++ +++R K LP+AL+ Sbjct: 62 ----ASLHRQGKSG-KTIQRMLSTLRTFFRYLMREGLARDNPAIDIRAPKSGKRLPKALD 116 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 Q L+D + ++ + R+ AI+ LLY CGLR++E LSL +I +S L + Sbjct: 117 VDQVSHLLDA----GTSNSEPLALRDQAIMELLYACGLRLAELLSLNLDSIDLHESQLLV 172 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 GKG+K R +P+ A+ + + P + + Q LF G+ L+P Q+ +++ Sbjct: 173 TGKGNKTRQLPVGKPALTAVRRWLQVRPMLIKSSDQNALFISKNGRRLSPSSVQQRLKRH 232 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 GL H LRHSFATHLL + GDLR++Q +LGH L+TTQ+YT+++ ++ + Sbjct: 233 ALERGLDAHLHPHKLRHSFATHLLESSGDLRAVQELLGHADLATTQVYTHLDFQH----L 288 Query: 311 MEIYDQTHP 319 ++YD HP Sbjct: 289 AQVYDGAHP 297 >gi|291484781|dbj|BAI85856.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp. natto BEST195] Length = 296 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 98/302 (32%), Positives = 159/302 (52%), Gaps = 14/302 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++++ + +ERGLS+ T+ SYE D + + ++L E + + ++ I ++ Sbjct: 6 KDFIHYVMVERGLSQNTIVSYERDLKSYSLYLT----ETLHVTDWNHVTRIHIIQYLKHL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + ++ R L+ I+SF ++L + K+T + +++ K +LP+ L AL V Sbjct: 62 KDSGKSGKTSARHLASIRSFHQFLLREKVTDKDPSVHIETQKTERALPKVL----ALNEV 117 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + LL T T R+ A+L LLY G+R+SE + L ++ +R GKG K R Sbjct: 118 ER-LLDTPKLTSPFGYRDKAMLELLYATGIRVSEMIELKTTDVHLSMGFVRCFGKGRKER 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 IVP+ + AI EY L N+ LF GK ++ F + ++++ G+ Sbjct: 177 IVPIGEAAASAIEEYMTKARGKLLKNNVSDALFLNHHGKQISRQGFWKNLKKIALEAGIK 236 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V + ++Y Q Sbjct: 237 KELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTR----LKDVYKQF 292 Query: 318 HP 319 HP Sbjct: 293 HP 294 >gi|228992829|ref|ZP_04152754.1| Tyrosine recombinase xerD [Bacillus pseudomycoides DSM 12442] gi|228998874|ref|ZP_04158459.1| Tyrosine recombinase xerD [Bacillus mycoides Rock3-17] gi|228760890|gb|EEM09851.1| Tyrosine recombinase xerD [Bacillus mycoides Rock3-17] gi|228766878|gb|EEM15516.1| Tyrosine recombinase xerD [Bacillus pseudomycoides DSM 12442] Length = 296 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 93/302 (30%), Positives = 161/302 (53%), Gaps = 14/302 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++++ + +E+GL+K T+ SYE D + ++ +L + I+T +++ I F+ Sbjct: 6 KDFIHYMIVEKGLAKNTVVSYERDLKSYVKYLQHVEQ----IKTFHEVTRIHIVNFLQYL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + ++L R ++ I+SF ++L + ++ +++ + LP+ L+ + Sbjct: 62 KENGKSSKTLARHIASIRSFHQFLLRERVVEHDPSVHIETPQGERKLPKVLSVSEV---- 117 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL T ET R+ A+L LLY GLR+SE ++L +++ +R GKG+K R Sbjct: 118 -EALLQTPKETSAFGIRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCVGKGNKER 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 I+PL +AI Y + +L + LF G L+ F + +++L + + Sbjct: 177 IIPLGSLATEAIQRYIEKGRKELMGKKTVDALFLNHHGNRLSRQGFWKILKRLAKEANIE 236 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V+ + ++Y Q Sbjct: 237 KELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKAR----LKDVYKQF 292 Query: 318 HP 319 HP Sbjct: 293 HP 294 >gi|126663469|ref|ZP_01734466.1| site-specific recombinase [Flavobacteria bacterium BAL38] gi|126624417|gb|EAZ95108.1| site-specific recombinase [Flavobacteria bacterium BAL38] Length = 299 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 105/311 (33%), Positives = 164/311 (52%), Gaps = 27/311 (8%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE----KITIQTIRQLSYTE 70 +KE QN+L+ +ERGLSK T+++Y D + ++FL + + I+ +TI+Q Y E Sbjct: 8 IKEYQNYLR---LERGLSKNTIENYTFDIEKLVVFLNTHDIQVSPIHISEETIQQFIY-E 63 Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 I + K+ RS R +SG+KSF YL ++ + + K LP L Sbjct: 64 IAS--------KVNARSQSRLISGLKSFFNYLVFEDYRKDTPLELIEVPKTGRKLPDTLA 115 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 ++ L+ + L T RN A+L LY CGLR+SE + L ++ ++ ++I Sbjct: 116 TEEIDALIAAIDLSTPE-----GERNRAMLETLYSCGLRVSELVGLKISDLFFEEGFIKI 170 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDL--CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 GKG+K R VP+ S K I Y +L + + + LF RGK L + I+ Sbjct: 171 TGKGNKQRFVPVGGSTIKYITSYMNLIRVHYTVQKGHEDTLFLNRRGKQLTRAMVFTIIK 230 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 L + L + + HT RHSFATHLL NG DLRSIQ +LGH ++TT++Y +++ K Sbjct: 231 DLAVKINLNKTISPHTFRHSFATHLLENGADLRSIQLMLGHESITTTEVYMHLDRK---- 286 Query: 309 WMMEIYDQTHP 319 ++ E+ + HP Sbjct: 287 FLSEVLNNYHP 297 >gi|293602487|ref|ZP_06684933.1| phage integrase family site-specific recombinase [Achromobacter piechaudii ATCC 43553] gi|292819249|gb|EFF78284.1| phage integrase family site-specific recombinase [Achromobacter piechaudii ATCC 43553] Length = 335 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 102/319 (31%), Positives = 153/319 (47%), Gaps = 27/319 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL++LE R S TL Y R+ K+ + I + IR FI++ Sbjct: 28 WLRHLETNRRYSPHTLDGYR---RELHFLHELADRAKLPLDKI---ANGHIRQFIARLHA 81 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q G RSL R+L+ + F ++ + + +R K LP+AL+ +Q L+D Sbjct: 82 QGRGPRSLARTLAAWRGFYQWWAPAVDLAGNPVAGVRAPKAPRGLPKALSVEQTQALLDR 141 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNIMD---------DQSTLR 189 ++E + R+ A+ LLY GLR+SE L L D D++ + Sbjct: 142 PAAKVANEP--VALRDQAMFELLYSSGLRLSELVGLDLRYTRTADYESAGWLKLDEAEVE 199 Query: 190 IQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245 + GKG K R VP+ L ++ K I L P LF G RGK ++P V Q Sbjct: 200 VLGKGGKRRSVPVGQAALAALSKWIAARPQLAPPSPAPQDAAALFLGARGKRISPRVVQL 259 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + Q + GLP H LRHSFA+H+L + DLR++Q +LGH +STTQIYT ++ ++ Sbjct: 260 QLAQFAQAAGLPTHVHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQIYTRLDFQH 319 Query: 306 GGDWMMEIYDQTHPSITQK 324 + + YDQ HP +K Sbjct: 320 ----LAKAYDQAHPRAGRK 334 >gi|69246761|ref|ZP_00604109.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus faecium DO] gi|257878024|ref|ZP_05657677.1| phage integrase [Enterococcus faecium 1,230,933] gi|257881190|ref|ZP_05660843.1| phage integrase [Enterococcus faecium 1,231,502] gi|257884853|ref|ZP_05664506.1| phage integrase [Enterococcus faecium 1,231,501] gi|257889777|ref|ZP_05669430.1| phage integrase [Enterococcus faecium 1,231,410] gi|257892286|ref|ZP_05671939.1| phage integrase [Enterococcus faecium 1,231,408] gi|261207608|ref|ZP_05922293.1| phage integrase [Enterococcus faecium TC 6] gi|289565120|ref|ZP_06445573.1| tyrosine recombinase XerC [Enterococcus faecium D344SRF] gi|293556768|ref|ZP_06675331.1| tyrosine recombinase XerC [Enterococcus faecium E1039] gi|293563426|ref|ZP_06677875.1| tyrosine recombinase XerC [Enterococcus faecium E1162] gi|293568161|ref|ZP_06679497.1| tyrosine recombinase XerC [Enterococcus faecium E1071] gi|294614817|ref|ZP_06694712.1| tyrosine recombinase XerC [Enterococcus faecium E1636] gi|294617496|ref|ZP_06697127.1| tyrosine recombinase XerC [Enterococcus faecium E1679] gi|294622307|ref|ZP_06701350.1| tyrosine recombinase XerC [Enterococcus faecium U0317] gi|68195115|gb|EAN09575.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus faecium DO] gi|257812252|gb|EEV41010.1| phage integrase [Enterococcus faecium 1,230,933] gi|257816848|gb|EEV44176.1| phage integrase [Enterococcus faecium 1,231,502] gi|257820691|gb|EEV47839.1| phage integrase [Enterococcus faecium 1,231,501] gi|257826137|gb|EEV52763.1| phage integrase [Enterococcus faecium 1,231,410] gi|257828665|gb|EEV55272.1| phage integrase [Enterococcus faecium 1,231,408] gi|260077991|gb|EEW65697.1| phage integrase [Enterococcus faecium TC 6] gi|289163127|gb|EFD10974.1| tyrosine recombinase XerC [Enterococcus faecium D344SRF] gi|291589151|gb|EFF20963.1| tyrosine recombinase XerC [Enterococcus faecium E1071] gi|291592279|gb|EFF23893.1| tyrosine recombinase XerC [Enterococcus faecium E1636] gi|291596236|gb|EFF27498.1| tyrosine recombinase XerC [Enterococcus faecium E1679] gi|291598199|gb|EFF29297.1| tyrosine recombinase XerC [Enterococcus faecium U0317] gi|291601100|gb|EFF31389.1| tyrosine recombinase XerC [Enterococcus faecium E1039] gi|291604687|gb|EFF34172.1| tyrosine recombinase XerC [Enterococcus faecium E1162] Length = 301 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 103/310 (33%), Positives = 160/310 (51%), Gaps = 27/310 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +L+ L +ERG S+ T ++YE D F FL E+ + + Y +R ++S Sbjct: 8 QKFLRYLIVERGYSEKTKEAYEEDILHFKHFL-----EESGDADLLKAEYFTVRVYLSAL 62 Query: 79 RTQK--IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN-SLPRALNEKQAL 135 + S+ R ++ ++SF +YL K ++ E N + +LKK N LPR E + Sbjct: 63 ADHRPSYSRNSISRKIASLRSFYQYLLKEEVIKE-NPFSYVHLKKKNLRLPRFFYENEMQ 121 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L D+V + +D RN A+L +LYG G+R+SE SL+ +I D + I GKG+ Sbjct: 122 ALFDSVAGDSP-----LDLRNRALLEVLYGSGIRLSECSSLSVSDIDFDSEVMLIHGKGN 176 Query: 196 KIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 K R PL + A+ EY+ + + +I +F GKP+ P + + Q Sbjct: 177 KERYAPLGSFAQDALQEYFREGRQVLMTKYHEEHDI---VFVNHHGKPITPTGIEYVLNQ 233 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 + + L H LRH+FATHLL+NG DLR++Q +LGH LSTTQIY +V ++ Sbjct: 234 MIKKSSLDSDIHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKES---- 289 Query: 310 MMEIYDQTHP 319 + + Y HP Sbjct: 290 LQKNYRSFHP 299 >gi|314938036|ref|ZP_07845346.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a04] gi|314941978|ref|ZP_07848839.1| tyrosine recombinase XerC [Enterococcus faecium TX0133C] gi|314948769|ref|ZP_07852141.1| tyrosine recombinase XerC [Enterococcus faecium TX0082] gi|314951787|ref|ZP_07854826.1| tyrosine recombinase XerC [Enterococcus faecium TX0133A] gi|314991806|ref|ZP_07857264.1| tyrosine recombinase XerC [Enterococcus faecium TX0133B] gi|314995847|ref|ZP_07860934.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a01] gi|313589951|gb|EFR68796.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a01] gi|313593617|gb|EFR72462.1| tyrosine recombinase XerC [Enterococcus faecium TX0133B] gi|313596066|gb|EFR74911.1| tyrosine recombinase XerC [Enterococcus faecium TX0133A] gi|313599230|gb|EFR78075.1| tyrosine recombinase XerC [Enterococcus faecium TX0133C] gi|313642611|gb|EFS07191.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a04] gi|313644835|gb|EFS09415.1| tyrosine recombinase XerC [Enterococcus faecium TX0082] Length = 314 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 103/310 (33%), Positives = 160/310 (51%), Gaps = 27/310 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +L+ L +ERG S+ T ++YE D F FL E+ + + Y +R ++S Sbjct: 21 QKFLRYLIVERGYSEKTKEAYEEDILHFKHFL-----EESGDADLLKAEYFTVRVYLSAL 75 Query: 79 RTQK--IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN-SLPRALNEKQAL 135 + S+ R ++ ++SF +YL K ++ E N + +LKK N LPR E + Sbjct: 76 ADHRPSYSRNSISRKIASLRSFYQYLLKEEVIKE-NPFSYVHLKKKNLRLPRFFYENEMQ 134 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L D+V + +D RN A+L +LYG G+R+SE SL+ +I D + I GKG+ Sbjct: 135 ALFDSVAGDSP-----LDLRNRALLEVLYGSGIRLSECSSLSVSDIDFDSEVMLIHGKGN 189 Query: 196 KIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 K R PL + A+ EY+ + + +I +F GKP+ P + + Q Sbjct: 190 KERYAPLGSFAQDALQEYFREGRQVLMTKYHEEHDI---VFVNHHGKPITPTGIEYVLNQ 246 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 + + L H LRH+FATHLL+NG DLR++Q +LGH LSTTQIY +V ++ Sbjct: 247 MIKKSSLDSDIHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKES---- 302 Query: 310 MMEIYDQTHP 319 + + Y HP Sbjct: 303 LQKNYRSFHP 312 >gi|260559074|ref|ZP_05831260.1| phage integrase [Enterococcus faecium C68] gi|260074831|gb|EEW63147.1| phage integrase [Enterococcus faecium C68] Length = 301 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 103/310 (33%), Positives = 160/310 (51%), Gaps = 27/310 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +L+ L +ERG S+ T ++YE D F FL E+ + + Y +R ++S Sbjct: 8 QKFLRYLIVERGYSEKTKEAYEEDILHFKHFL-----EESGDADLLKAEYFTVRVYLSAL 62 Query: 79 RTQK--IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN-SLPRALNEKQAL 135 + S+ R ++ ++SF +YL K ++ E N + +LKK N LPR E + Sbjct: 63 ADHRSSYSRNSISRKIASLRSFYQYLLKEEVIKE-NPFSYVHLKKKNLRLPRFFYENEMQ 121 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L D+V + +D RN A+L +LYG G+R+SE SL+ +I D + I GKG+ Sbjct: 122 ALFDSVAGDSP-----LDLRNRALLEVLYGSGIRLSECSSLSVSDIDFDSEVMLIHGKGN 176 Query: 196 KIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 K R PL + A+ EY+ + + +I +F GKP+ P + + Q Sbjct: 177 KERYAPLGSFAQDALQEYFREGRQVLMTKYHEEHDI---VFVNHHGKPITPTGIEYVLNQ 233 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 + + L H LRH+FATHLL+NG DLR++Q +LGH LSTTQIY +V ++ Sbjct: 234 MIKKSSLDSDIHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKES---- 289 Query: 310 MMEIYDQTHP 319 + + Y HP Sbjct: 290 LQKNYRSFHP 299 >gi|120555190|ref|YP_959541.1| tyrosine recombinase XerD [Marinobacter aquaeolei VT8] gi|120325039|gb|ABM19354.1| tyrosine recombinase XerD subunit [Marinobacter aquaeolei VT8] Length = 301 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 99/294 (33%), Positives = 152/294 (51%), Gaps = 14/294 (4%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 +E GL + T Q+Y D L L+ + E++ T+R T++ A++S+ + + Sbjct: 19 LEDGLGEKTRQAYASD----LYRLSGWLEQQAGAPTLRSARRTDLLAWMSRGLSDGLKTS 74 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 + R LSG++ F ++L + I E L + + + LP L E V+++L Sbjct: 75 TAARRLSGVRRFYRFLLREGIIAEDPTLRIDSPRLPRRLPDTLTEAD----VESLLTEPD 130 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 E ++ R+ A+L +LYGCGLR+SE LT + Q +RIQGKG K R+VPL Sbjct: 131 PELP-VELRDRAMLEILYGCGLRVSELTGLTVDQVNLRQGVVRIQGKGGKERLVPLGEEA 189 Query: 207 RKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 +L+Y +L LF G RG + F IR G+ + HTL Sbjct: 190 VDWLLQYMRQARGELLRGKTSDALFPGNRGTAMTRQAFWYRIRHYAIRCGITKHLSPHTL 249 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 RH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + + +++ HP Sbjct: 250 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARQR----LQDLHQAHHP 299 >gi|253997561|ref|YP_003049625.1| tyrosine recombinase XerC [Methylotenera mobilis JLW8] gi|253984240|gb|ACT49098.1| tyrosine recombinase XerC [Methylotenera mobilis JLW8] Length = 293 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 102/307 (33%), Positives = 162/307 (52%), Gaps = 23/307 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 ++Q+L ERGLS+LT +Y D I L E +QTI S+ +IR FI K Sbjct: 7 YIQHLTFERGLSQLTCINYRRD-----ISLLESLAEAADLQTI---SHAQIRRFIGKLHA 58 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 +++ +S+ R+LS + F YL T++ + +R K + +LP+AL+ QA+ VD Sbjct: 59 RELSSKSIARALSAWRGFYDYLIHHHGYTQNPVHGLRAPKAAKTLPQALSVDQAVNFVD- 117 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 +D R+ AIL L Y GLR++E ++L + T+ + GKG+K RIV Sbjct: 118 -----IQGGGTLDLRDHAILELFYSSGLRLAELVNLDIDRLDFTDGTVEVIGKGNKTRIV 172 Query: 201 PLLPSVRKAI---LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 PL +A+ L+ L P N Q +F +GK + P Q ++ G Sbjct: 173 PLGSHAAEAMQKWLQARALIP-TAETNKQ-AVFITQQGKRITPRAVQYRVKAWAIKQGAD 230 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + H LRHSFA+H+L + DLR++Q +LGH +STTQ+YT+++ ++ + ++YD Sbjct: 231 SNLHPHMLRHSFASHVLQSSQDLRAVQEMLGHANISTTQVYTHLDFQH----LAKVYDNA 286 Query: 318 HPSITQK 324 HP +K Sbjct: 287 HPRAKKK 293 >gi|281357422|ref|ZP_06243910.1| integrase family protein [Victivallis vadensis ATCC BAA-548] gi|281316025|gb|EFB00051.1| integrase family protein [Victivallis vadensis ATCC BAA-548] Length = 314 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 103/312 (33%), Positives = 154/312 (49%), Gaps = 19/312 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +LQ L +ER S T+++Y D L FL E + Q+ + R F+S Sbjct: 7 GFLQYLRVERNASSHTVEAYRSD---ILEFLRRVMEADESFNAWSQVERNQARRFVSSLF 63 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP--RALNEKQALT- 136 RS++R LS ++SF +Y+ + ++ ++ L + +K LP ++N+ LT Sbjct: 64 EAGDSKRSIQRKLSALRSFFRYMMRMELLGDNPFLKLPPIKADQPLPLVMSINQIDLLTK 123 Query: 137 --------LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 N + + ++ AR+ A++ ++Y GLRISE L +I Sbjct: 124 AVGEYWEMAAANGISKSDEAAEFAAARDLAMVEVIYSGGLRISETTGLDMGDIDLIGGIA 183 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 R++GKG K RI L +KA+ Y+ L P+F GK L P FQR + Sbjct: 184 RVRGKGKKERIAVLGRPSQKALRNYFKLRSTVGGGRAPGSPVFLNKFGKRLTPRSFQRNL 243 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 + LP T H LRHSFATHLL G DLRS+Q +LGH LSTTQIYT+V+++ Sbjct: 244 KNYLIAANLPPDLTPHKLRHSFATHLLDAGADLRSVQEMLGHENLSTTQIYTHVSAER-- 301 Query: 308 DWMMEIYDQTHP 319 M E+Y + HP Sbjct: 302 --MKEVYKEAHP 311 >gi|161507450|ref|YP_001577404.1| integrase/recombinase [Lactobacillus helveticus DPC 4571] gi|260101638|ref|ZP_05751875.1| integrase/recombinase XerD [Lactobacillus helveticus DSM 20075] gi|160348439|gb|ABX27113.1| Integrase/recombinase [Lactobacillus helveticus DPC 4571] gi|260084571|gb|EEW68691.1| integrase/recombinase XerD [Lactobacillus helveticus DSM 20075] gi|323466665|gb|ADX70352.1| Tyrosine recombinase xerD [Lactobacillus helveticus H10] gi|328467464|gb|EGF38539.1| tyrosine recombinase xerD [Lactobacillus helveticus MTCC 5463] Length = 301 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 101/324 (31%), Positives = 168/324 (51%), Gaps = 26/324 (8%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 ME N L + + ++L+ +IERGLS T+ +Y D ++L F+ + Sbjct: 1 MEKNKLQDQID--------DYLRYSQIERGLSSNTITAYRQDLEEYLAFVKKEGMDSWPT 52 Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 + +++ AF++++ S+ R +S ++ F ++L ++ I + +L + K Sbjct: 53 EA------SDVDAFLARQYDLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPK 106 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 K LP ALN+K+ N LL + + R+ AIL LY G+R+SE ++L Q+ Sbjct: 107 KERRLPVALNQKEI-----NDLLAQPDIKRKLGLRDRAILETLYATGMRVSELINLELQD 161 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI---QLPLFRGIRGKP 237 + +D +R+ GKG K R++P+ I +Y L L +F R K Sbjct: 162 LHEDLGLVRVLGKGSKERLIPISSVALHWIKQYQKEVRDPLILKAGQNDEHIFLNSRAKQ 221 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L + I++ + G+ T HTLRH+FATHLL NG DLR +Q ILGH +STTQI Sbjct: 222 LTRQAIWQMIKKYCQSAGITKDVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQI 281 Query: 298 YTNVNSKNGGDWMMEIYDQTHPSI 321 YTN++ K+ ++++Y +THP + Sbjct: 282 YTNLSQKH----ILQVYQKTHPRL 301 >gi|294500946|ref|YP_003564646.1| tyrosine recombinase XerC [Bacillus megaterium QM B1551] gi|294350883|gb|ADE71212.1| tyrosine recombinase XerC [Bacillus megaterium QM B1551] Length = 300 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 105/317 (33%), Positives = 164/317 (51%), Gaps = 30/317 (9%) Query: 13 ELLKERQN-WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71 E +K+ N +L+ L+IE+ SK T+ YE D IF++F EE+I Q ++ ++Y + Sbjct: 2 EFVKDVLNSFLEYLQIEKNYSKYTVDCYEKDIG---IFMSFMQEEQI--QNLQSVTYADA 56 Query: 72 RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALN 130 R F+++ ++ RS+ R +S +++F +YL + ++ E N + L KK PR L Sbjct: 57 RLFLTRLYEKQYSKRSMSRKISCLRTFYRYLNREELV-EDNPFALVTLPKKEERNPRFLY 115 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 E++ + L + T + RN ++L LLY G+R+SE S+ +I TL + Sbjct: 116 EEEIVKL-----FQMNDLTTPLGQRNQSLLELLYATGIRVSECASIKLSDIDFSLQTLLV 170 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYD--------LCPFDLNLNIQLPLFRGIRGKPLNPGV 242 GKG K R VP + A+ Y D P D + LF +G PL Sbjct: 171 YGKGKKQRYVPFGCYAKGALRVYIDNGRKLLLKKAPSDTH-----SLFLNYKGTPLTDRG 225 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + I QL + + + H LRH+FATH+L+ G DLR++Q +LGH LSTTQIYT+V Sbjct: 226 IRLVIDQLVKKTAENIHISPHVLRHTFATHMLNEGADLRTVQEMLGHEHLSTTQIYTHVT 285 Query: 303 SKNGGDWMMEIYDQTHP 319 D + +Y HP Sbjct: 286 K----DRLKAVYMNHHP 298 >gi|312880071|ref|ZP_07739871.1| integrase family protein [Aminomonas paucivorans DSM 12260] gi|310783362|gb|EFQ23760.1| integrase family protein [Aminomonas paucivorans DSM 12260] Length = 308 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 103/303 (33%), Positives = 163/303 (53%), Gaps = 21/303 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L L +ERG S+ TL++Y D F F A + + E+ F+ + Sbjct: 23 ESFLTYLALERGASEHTLRAYRSDLTHFEDFCARRGKPPCPPEE------NELTLFLREL 76 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES-NILNMRNLKKSNSLPRALNEKQALTL 137 + Q + S++R + ++SFL++L+++ S L++ + + LP+ L E + Sbjct: 77 QRQGLAASSVQRRAACLRSFLRFLQEQGEPAASREPLSLPD--RPAPLPQILTEGEV--- 131 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 LL T + +D R+ A+ L+YGCGLR SEA SL +++ TLR+QGKG+K Sbjct: 132 --GRLLETCDGSASLDLRDRALFELIYGCGLRASEACSLRLRDVDFTGGTLRVQGKGNKT 189 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 RIVPLL VRKA+ Y + + + L R +PL R +R+ G+P Sbjct: 190 RIVPLLGEVRKAVERYLAAGRGEAPGDPEALLLSRNR-RPLRREDLWRIVRRRGVQAGIP 248 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 S H LRHSFATHLL +G DLR++QS+LGH L TT+ YT+ + + + ++YD+ Sbjct: 249 SSRLHPHILRHSFATHLLRHGMDLRTLQSLLGHASLGTTEKYTHFDQE-----LRDVYDR 303 Query: 317 THP 319 HP Sbjct: 304 AHP 306 >gi|89895297|ref|YP_518784.1| hypothetical protein DSY2551 [Desulfitobacterium hafniense Y51] gi|89334745|dbj|BAE84340.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 298 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 98/288 (34%), Positives = 152/288 (52%), Gaps = 14/288 (4%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 S+ TL +Y D QF F A E+ T+ Q+ +R+F+ + + + +S+ R Sbjct: 20 SQHTLMAYHKDLIQFFEFAARELGEEPEKVTVDQVDIYIVRSFLGEMTERGLERKSMARK 79 Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 LS +++F K+L + I ++ I + K LP L+ ++ + L+ T Sbjct: 80 LSALRAFFKFLCREGILQKNPIQRIATPKLGRKLPHFLSLEEL-----DRLIRTPDCATL 134 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211 + AR+ IL LLYG GLR+SE L ++I + S LR++GKG+K RIVPL +A Sbjct: 135 LGARDQVILELLYGSGLRVSELADLNCRDIDEGTSLLRVRGKGNKERIVPLTHYALEAAR 194 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 +Y ++ + Q L +G L+ +R + L GL H LRHSFAT Sbjct: 195 QY-----LEMREDKQEALLLNYQGTRLSVRSIRRILDGLALEAGLSQHLHPHMLRHSFAT 249 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HLL G DLRS+Q +LGH +LS+TQIYT++ + + E+Y+Q HP Sbjct: 250 HLLDGGADLRSVQELLGHAKLSSTQIYTHLTK----ERLREVYEQNHP 293 >gi|1303994|dbj|BAA12649.1| YqkM [Bacillus subtilis] Length = 296 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 97/302 (32%), Positives = 159/302 (52%), Gaps = 14/302 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++++ + +ERGLS+ T+ SYE D + + ++L E + + ++ I ++ Sbjct: 6 KDFIHYVMVERGLSQNTIVSYERDLKSYSLYLT----ETLHVTDWNHVTRIHIIQYLKHL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + ++ R L+ I+SF ++L + K+T + +++ K +LP+ L AL V Sbjct: 62 KDSGKSGKTSARHLASIRSFHQFLLREKVTDKDPSVHIETQKTERALPKVL----ALNEV 117 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + LL T T R+ A+L LLY G+R+SE + L ++ +R GKG K R Sbjct: 118 ER-LLDTPKLTSPFGYRDKAMLELLYATGIRVSEMIELKTADVHLSMGFIRCFGKGRKER 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 IVP+ + AI EY L N+ LF GK ++ F + ++++ G+ Sbjct: 177 IVPIGEAAASAIEEYMTKARGKLLKNNVSDALFLNHHGKQISRQGFWKNLKKIALEAGIK 236 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T HTLRHSFATHLL +G DLR++Q +LGH +STTQIYT+V + ++Y Q Sbjct: 237 KELTPHTLRHSFATHLLEDGADLRAVQEMLGHADISTTQIYTHVTKTR----LKDVYKQF 292 Query: 318 HP 319 HP Sbjct: 293 HP 294 >gi|315653500|ref|ZP_07906421.1| integrase/recombinase XerD [Lactobacillus iners ATCC 55195] gi|315489191|gb|EFU78832.1| integrase/recombinase XerD [Lactobacillus iners ATCC 55195] Length = 297 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 98/307 (31%), Positives = 166/307 (54%), Gaps = 20/307 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L+ +IERGLS TL SY D L + +F IT + L I +F+++ Sbjct: 7 EDYLRFAQIERGLSNNTLLSYRQD---LLEYFSFLKSLGITTWEVDALI---IDSFLAQE 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + S+ R LS ++ F ++L ++ + + +L + + KK LP AL+ + L+ Sbjct: 61 RDKGKAIASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPTALSTTEVTKLI 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + T + R+ AIL LY G+R+SE ++L +I ++ +++ GKG K R Sbjct: 121 N-----MPDTTTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQR 175 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 ++P+ +V + ++ Y + + L + +F RG + + I++ + Sbjct: 176 LIPI-SNVAMSWIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLA 234 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ + T HTLRH+FATHLL NG DLR +Q ILGH +STTQIYTN+ K+ +M++Y Sbjct: 235 GINKNVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQKH----IMDVY 290 Query: 315 DQTHPSI 321 +THP I Sbjct: 291 KRTHPRI 297 >gi|134299829|ref|YP_001113325.1| tyrosine recombinase XerC [Desulfotomaculum reducens MI-1] gi|134052529|gb|ABO50500.1| tyrosine recombinase XerC subunit [Desulfotomaculum reducens MI-1] Length = 298 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 89/300 (29%), Positives = 161/300 (53%), Gaps = 10/300 (3%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 N++ L++++ S T+++Y+ D L + + + I ++ + +R F++ R Sbjct: 7 NFVNYLKVQKNFSIHTIEAYQKDLFDGLDYFSIVLNKPIEKMDHASINSSLVREFLAYLR 66 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + + ++ R L+ ++F K+L ++ + +L + N K+ LP+ L +++ LV+ Sbjct: 67 QKNLSRATVARKLASWRAFFKFLYNERLAYTNPMLRVANPKREKRLPKFLYQEETKQLVE 126 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + + + R+ A+L LLY G+R+SE ++L NI + +R+ GKG K R+ Sbjct: 127 ------APDHSPLGIRDRALLELLYATGIRVSELVALDLSNIDLARGYIRVMGKGSKERV 180 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 VP S A+ EY + + +F +G L+ ++ + + + LG+ L+ Sbjct: 181 VPFHQSAVAAMKEYCRNARPKMVIKDCEAVFVNYKGTRLSDRGIRKIVDKYCQRLGMKLN 240 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HT+RHSFATHLL NG DLRS+Q +LGH LSTTQIYT+V K + +Y +HP Sbjct: 241 VSPHTIRHSFATHLLDNGADLRSVQELLGHVSLSTTQIYTHVTKKK----IKRVYKMSHP 296 >gi|77918237|ref|YP_356052.1| site-specific recombinase [Pelobacter carbinolicus DSM 2380] gi|77544320|gb|ABA87882.1| site-specific recombinase [Pelobacter carbinolicus DSM 2380] Length = 332 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 107/321 (33%), Positives = 166/321 (51%), Gaps = 24/321 (7%) Query: 11 SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI---TIQTIRQLS 67 F++ + + ++LE+ER LS TL++Y D +F FL E+ T I Q+ Sbjct: 28 GFDMDRLIARFCRHLEVERNLSPHTLRAYRQDLTEFSRFLKQEAGEEGSSNTASAIEQVD 87 Query: 68 YTEIRAFISK--RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 +R ++++ +R +K ++ R LS ++SF +YL ++ S + K+ L Sbjct: 88 ALVLRRYLARLHKRNRKT---TIGRKLSAVRSFFRYLVRQGELAVSPAETVATPKREQYL 144 Query: 126 PRALNEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 P+ L VD V L+ + + + R+ AIL L Y GLR+ E L ++ Sbjct: 145 PKVLT-------VDEVFALIKAADGDEPLTVRDRAILELFYSSGLRVGELEGLDVGHVDL 197 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 +R++GKGDK RIVP+ R+A+ Y L + Q PLF RG L+ Sbjct: 198 RDGLVRVRGKGDKERIVPMGRPARQALGRY--LAERGVPDREQ-PLFLNYRGGRLSSRSI 254 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 +R +++ G+ + H LRH+FATHLL G DLR+IQ +LGH LSTTQ YT V+ Sbjct: 255 ERNLKKWLLCAGILKDASPHALRHTFATHLLDGGADLRAIQELLGHASLSTTQKYTQVSL 314 Query: 304 KNGGDWMMEIYDQTHPSITQK 324 D +ME+YD+THP +K Sbjct: 315 ----DRLMEVYDRTHPRGRKK 331 >gi|257869544|ref|ZP_05649197.1| phage integrase [Enterococcus gallinarum EG2] gi|257803708|gb|EEV32530.1| phage integrase [Enterococcus gallinarum EG2] Length = 296 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 107/305 (35%), Positives = 165/305 (54%), Gaps = 22/305 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L L IERGLS+ T +SYE D Q+L FL TE+ I + + + I +F+ + + Sbjct: 7 DYLHYLTIERGLSQNTRKSYERDLEQYLTFL---TEQHI--KDWQAVDRVLILSFLQQLQ 61 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 ++ R +S ++ F ++L++ + T + ++ + KK LP L +L+ V+ Sbjct: 62 QSGKSSATIIRMVSSLRRFHQFLRQERFTDHDPMQHIDSPKKQQKLPDTL----SLSEVE 117 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 L+ T + + R+ AIL ++Y GLR+SE + L +++ L+ GKGDK RI Sbjct: 118 R-LIETPDTKEVLGIRDRAILEVMYATGLRVSELIGLQLKDLHLSMGLLQTTGKGDKERI 176 Query: 200 VPLLPSVRKAILEYYDLC-PFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYL 254 VPL + I Y + PF L + P LF GK L+ + ++ L R Sbjct: 177 VPLGDLAIQWIETYLEEARPF---LTRKHPEESHLFVNNHGKQLSRQGIWKNLKALVRKA 233 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ + T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT++ K M E+Y Sbjct: 234 GITKNVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR----MTEVY 289 Query: 315 DQTHP 319 Q P Sbjct: 290 KQHFP 294 >gi|306836032|ref|ZP_07469022.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726] gi|304568059|gb|EFM43634.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726] Length = 296 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 99/301 (32%), Positives = 150/301 (49%), Gaps = 15/301 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q WL +L +ERG+S TL +Y D R+++ +LA +Q +RQ++ + A++ Sbjct: 9 QTWLNHLAVERGVSANTLSNYRRDIRRYVDWLA-----DNGVQDLRQVTRPMVEAYLKDL 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R +K+ S R+L + K+ + LP L+ + L+ Sbjct: 64 R-EKMAVSSANRALIVARGLHKFAVAEGEVDSDVAAEVSPPSTGQHLPETLSVDEVSRLI 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 ++ T ET +D R+ A+L +LYG G RISE +SL ++ L + GKGDK R Sbjct: 123 ES----TPTETP-VDLRDRALLEVLYGTGARISEVISLNVDDVATADDVLMLHGKGDKER 177 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +VPL R+AI Y L LF RG L+ I+ + L Sbjct: 178 LVPLGSHARQAIDAYLVRARPVLGKGKTAALFLNTRGGALSRQSAWSIIKTAAQRSQLDK 237 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 S + HTLRHSFATHLL G D+R++Q +LGH ++TTQIYT+V + D + E++ H Sbjct: 238 SISPHTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTA----DSLREVWRTAH 293 Query: 319 P 319 P Sbjct: 294 P 294 >gi|295706292|ref|YP_003599367.1| tyrosine recombinase XerC [Bacillus megaterium DSM 319] gi|294803951|gb|ADF41017.1| tyrosine recombinase XerC [Bacillus megaterium DSM 319] Length = 300 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 105/317 (33%), Positives = 164/317 (51%), Gaps = 30/317 (9%) Query: 13 ELLKERQN-WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71 E +K+ N +L+ L+IE+ SK T+ YE D IF++F EE+I Q ++ ++Y + Sbjct: 2 EFVKDVLNSFLEYLQIEKNYSKYTVDCYEKDIG---IFMSFMQEEQI--QNLQSVTYADA 56 Query: 72 RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALN 130 R F+++ ++ RS+ R +S +++F +YL + ++ E N + L KK PR L Sbjct: 57 RLFLTRLYEKQYSKRSMSRKISCLRTFYRYLNREELV-EDNPFALVTLPKKEERNPRFLY 115 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 E++ + L + T + RN ++L LLY G+R+SE S+ +I TL + Sbjct: 116 EEEIVKL-----FQMNDLTTPLGQRNQSLLELLYATGIRVSECSSIKLSDIDFSLQTLLV 170 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYD--------LCPFDLNLNIQLPLFRGIRGKPLNPGV 242 GKG K R VP + A+ Y D P D + LF +G PL Sbjct: 171 YGKGKKQRYVPFGCYAKGALRVYIDNGRKLLLKKAPSDTH-----SLFLNYKGTPLTDRG 225 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + I QL + + + H LRH+FATH+L+ G DLR++Q +LGH LSTTQIYT+V Sbjct: 226 IRLVIDQLVKKTAENIHISPHVLRHTFATHMLNEGADLRTVQEMLGHEHLSTTQIYTHVT 285 Query: 303 SKNGGDWMMEIYDQTHP 319 D + +Y HP Sbjct: 286 K----DRLKAVYMNHHP 298 >gi|116513910|ref|YP_812816.1| integrase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093225|gb|ABJ58378.1| tyrosine recombinase XerD subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325125576|gb|ADY84906.1| Integrase-recombinase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 298 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 101/320 (31%), Positives = 167/320 (52%), Gaps = 35/320 (10%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L ++ ++L+ +IERGLS T+ +Y+ D L FLAF EE++ L EI Sbjct: 3 KLAEQINDYLRYSQIERGLSPNTIAAYQQD---LLEFLAFVKEEQMPAWP---LEAVEID 56 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 AF++K R + S+ R +S + F ++L ++++ + + K+ +P AL E Sbjct: 57 AFLAKERDLGKANSSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEA 116 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + L++ L T + R+ +L LLY G+R+SEA++L ++ + +++ G Sbjct: 117 EVGKLLEQPDLTTD-----LGIRDRVLLELLYATGMRVSEAVNLQLADVHANLQLIKVLG 171 Query: 193 KGDKIRIVPL-----------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241 KG K R++P+ LP + +L+ + LF RG L Sbjct: 172 KGSKERLIPVSALALDWIKRYLPVRDQQLLKRGKSSDY---------LFLNSRGGQLTRQ 222 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + I++ + G+ T HTLRHSFATHLL +G DLR +Q ILGH +STTQIYTN+ Sbjct: 223 AVWQKIKKYCQQAGIAKDVTPHTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYTNL 282 Query: 302 NSKNGGDWMMEIYDQTHPSI 321 K+ ++++Y +THP I Sbjct: 283 TQKH----ILDVYQKTHPRI 298 >gi|296332285|ref|ZP_06874747.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674986|ref|YP_003866658.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus subtilis subsp. spizizenii str. W23] gi|296150599|gb|EFG91486.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413230|gb|ADM38349.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus subtilis subsp. spizizenii str. W23] Length = 296 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 97/302 (32%), Positives = 159/302 (52%), Gaps = 14/302 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++++ + +ERGLS+ T+ SYE D + + ++L E + + ++ I ++ Sbjct: 6 KDFIHYVMVERGLSQNTVVSYERDLKSYSLYLT----ETLHVTDWNHVTRIHIIQYLKHL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + ++ R L+ I+SF ++L + K+T + +++ K +LP+ L AL V Sbjct: 62 KDSGKSGKTSARHLASIRSFHQFLLREKVTDKDPSVHIETQKTERALPKVL----ALNEV 117 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + LL T T R+ A+L LLY G+R+SE + L ++ +R GKG K R Sbjct: 118 ER-LLDTPKLTSPFGYRDKAMLELLYATGIRVSEMIELKTADVHLSMGFVRCFGKGRKER 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 IVP+ + AI EY L N+ LF GK ++ F + ++++ G+ Sbjct: 177 IVPIGEAAASAIEEYITKARGKLLKNNVSDALFLNHHGKQISRQGFWKNLKKIALEAGIK 236 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T HTLRHSFA+HLL NG DLR++Q +LGH +STTQIYT+V + ++Y Q Sbjct: 237 KELTPHTLRHSFASHLLENGADLRAVQEMLGHADISTTQIYTHVTKTR----LKDVYKQF 292 Query: 318 HP 319 HP Sbjct: 293 HP 294 >gi|309807082|ref|ZP_07701061.1| tyrosine recombinase XerD [Lactobacillus iners LactinV 03V1-b] gi|309809309|ref|ZP_07703178.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 2503V10-D] gi|325911997|ref|ZP_08174399.1| tyrosine recombinase XerD [Lactobacillus iners UPII 143-D] gi|325912838|ref|ZP_08175216.1| tyrosine recombinase XerD [Lactobacillus iners UPII 60-B] gi|329921320|ref|ZP_08277758.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 1401G] gi|308166512|gb|EFO68712.1| tyrosine recombinase XerD [Lactobacillus iners LactinV 03V1-b] gi|308170422|gb|EFO72446.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 2503V10-D] gi|325476182|gb|EGC79346.1| tyrosine recombinase XerD [Lactobacillus iners UPII 143-D] gi|325477831|gb|EGC80965.1| tyrosine recombinase XerD [Lactobacillus iners UPII 60-B] gi|328934612|gb|EGG31116.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 1401G] Length = 296 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 98/307 (31%), Positives = 166/307 (54%), Gaps = 20/307 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L+ +IERGLS TL SY D L + +F IT + L I +F+++ Sbjct: 6 EDYLRFAQIERGLSNNTLLSYRQD---LLEYFSFLKSLGITTWEVDALI---IDSFLAQE 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + S+ R LS ++ F ++L ++ + + +L + + KK LP AL+ + L+ Sbjct: 60 RDKGKAIASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPTALSTTEVTKLI 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + T + R+ AIL LY G+R+SE ++L +I ++ +++ GKG K R Sbjct: 120 N-----MPDTTTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQR 174 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 ++P+ +V + ++ Y + + L + +F RG + + I++ + Sbjct: 175 LIPI-SNVAMSWIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLA 233 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ + T HTLRH+FATHLL NG DLR +Q ILGH +STTQIYTN+ K+ +M++Y Sbjct: 234 GINKNVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQKH----IMDVY 289 Query: 315 DQTHPSI 321 +THP I Sbjct: 290 KRTHPRI 296 >gi|283768283|ref|ZP_06341195.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa W1219] gi|283104675|gb|EFC06047.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa W1219] Length = 297 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 103/305 (33%), Positives = 157/305 (51%), Gaps = 17/305 (5%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI-RAF 74 K +++L + + R S T ++Y D F+ +L EK I T +++ + F Sbjct: 5 KSLKSFLDYIRLARTGSLHTEKAYRRDVENFIAYL-----EKKKIHTWKRVDKNFLLEYF 59 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 + R+ + + S R LS ++SF +YL + + + + +N+K S LP L Q Sbjct: 60 TTLRQKNHLSNSSYDRHLSSLRSFFRYLNVVEGIGHNPMSSFKNVKTSRPLPEYLTVDQV 119 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 L+D+ L + K + RN I+ LLY CGLRISE ++ Q+I +R+ GK Sbjct: 120 QDLLDSFDLE---DKKGL--RNRCIVELLYACGLRISECANIKIQDIHFRDYYVRVMGKE 174 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 K RIVP + + +Y L + + P F+G +GK ++ Q + + R L Sbjct: 175 SKERIVPFYKELGDLLTKY--LKKYGSFSQLSDPFFKGSKGKAISVRSIQLLLEKKGREL 232 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 LP H LRHSFATHLL NG DLR +QS+LGH LSTTQIYT+V+ D + + Sbjct: 233 KLPFQLHPHVLRHSFATHLLDNGADLRIVQSLLGHENLSTTQIYTHVSQ----DTLRRVI 288 Query: 315 DQTHP 319 +THP Sbjct: 289 AETHP 293 >gi|91774554|ref|YP_544310.1| tyrosine recombinase XerC subunit [Methylobacillus flagellatus KT] gi|91708541|gb|ABE48469.1| tyrosine recombinase XerC subunit [Methylobacillus flagellatus KT] Length = 291 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 99/306 (32%), Positives = 162/306 (52%), Gaps = 19/306 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +L+ L+ ERGLS LT++ Y D + L F + + + L + IR FI+ Sbjct: 5 QRYLEYLQFERGLSLLTVKHYRRD-----LELLFDLKSGMALDA---LQPSHIRRFIATL 56 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + +++ R LSG + F YL KR T + +MR K SLP+AL QA+ LV Sbjct: 57 HGRGLSGKTIARHLSGWRGFFDYLVKRHGATCNPCHDMRAPKSPKSLPKALAIDQAVQLV 116 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + R+ AIL L Y GLR+SE L ++ + T+++ GKG K R Sbjct: 117 D------MKGEDVLSIRDKAILELFYSSGLRLSEVTGLNIGDLNLHEGTVKVLGKGSKSR 170 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 IVP+ +A+ ++ + ++ + Q +F G+ ++ Q I+Q G+ Sbjct: 171 IVPIGRHAIQAMQDWLAVRQPAISSDEQ-AVFLNRNGRRISGRAIQYRIKQWAIRRGISS 229 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + H LRHSFA+H+L + GDLR++Q +LGH +STTQ+YT+++ ++ + ++YD H Sbjct: 230 NVHPHMLRHSFASHVLQSSGDLRAVQEMLGHANISTTQVYTHLDFQH----LAKVYDAAH 285 Query: 319 PSITQK 324 P +K Sbjct: 286 PRARKK 291 >gi|313158817|gb|EFR58200.1| phage integrase, N-terminal SAM domain protein [Alistipes sp. HGB5] Length = 300 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 96/306 (31%), Positives = 160/306 (52%), Gaps = 21/306 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFL----AFYTEEKITIQTIRQLSYTEIRAFI 75 +++ L ER S LT+++Y+ D QFL +L + + +T + IR+ I Sbjct: 4 EFIRYLSAERRYSPLTVRNYKHDVEQFLAWLDCDESRFDPRSVTTEQIREW-------II 56 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM-RNLKKSNSLPRALNEKQA 134 + K+ S+ R ++ +++F ++L R E +I M LK S LP + E + Sbjct: 57 FRTEEGKLSAGSMNREVASLRAFFRWLH-RTGAVEKDIFRMISTLKTSRRLPAFVPESRM 115 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 T+V + RNS I+ + Y CGLR++E + + + D ++LR++GKG Sbjct: 116 TTIVSEC---GPDSEDFQTERNSLIILMFYACGLRLAELVGIDRSDFSADYTSLRVRGKG 172 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 DK R+VP+L +R+ IL Y L ++ ++ + LF +GK ++ V R +++ Sbjct: 173 DKQRMVPILEFLREKILHYLGLIERQNICISSEKALFLTHKGKRISRSVVYRTVQEELTR 232 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ + H LRH+FATHLL+ G D+R IQ +LGH L TQ+YT+ N + EI Sbjct: 233 AGVQGKKSPHVLRHTFATHLLNGGADMREIQELLGHASLQATQVYTH----NSIARLREI 288 Query: 314 YDQTHP 319 Y + HP Sbjct: 289 YAKAHP 294 >gi|110833664|ref|YP_692523.1| integrase/recombinase XerD [Alcanivorax borkumensis SK2] gi|110646775|emb|CAL16251.1| integrase/recombinase XerD [Alcanivorax borkumensis SK2] Length = 312 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 100/305 (32%), Positives = 153/305 (50%), Gaps = 20/305 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +WL +E+GLS+ +L +Y D Q +L +++ + + E F++ R Sbjct: 19 SWLDQQWLEKGLSEHSLSNYRRDLSQLACWL---QGQRVALLGCERYQLLE---FLAYRH 72 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q + RS+ R LS +KSF ++LK+ +E L + K LP+ L+E L+ Sbjct: 73 QQGLSARSVARQLSAVKSFYRWLKREGRISEDPALLIERPKLGRPLPKTLSEADVEALLA 132 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 L T + R+ A+L +LY GLR++E ++LT + Q +R+ GKGDK R+ Sbjct: 133 APDLSTP-----LGLRDRAMLEVLYATGLRVTELVTLTQSQVNPRQGVIRVIGKGDKERL 187 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYL 254 VPL + Y L P LF RG + F I+QL Sbjct: 188 VPLGEEALHWLERYLREGRALLMGGAATPGNQELLFPSRRGTCMTRQTFWHRIKQLAVVA 247 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + + ++Y Sbjct: 248 GVQKKLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQQR----LQDVY 303 Query: 315 DQTHP 319 + HP Sbjct: 304 QKHHP 308 >gi|325285115|ref|YP_004260905.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489] gi|324320569|gb|ADY28034.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489] Length = 298 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 106/301 (35%), Positives = 160/301 (53%), Gaps = 24/301 (7%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFL--AFYTEEKITI--QTIRQLSYTEIRAFISKRRT 80 L+IERGL + ++ +Y D + + FL TE I+I +T +Q Y EI A Sbjct: 14 LKIERGLMENSITNYVLDVEKLITFLNKKNITESPISISKETTQQFIY-EISA------- 65 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 I RS R +SG+KSF YL ++ + + K LP L+ ++ L+D Sbjct: 66 -SINPRSQARIISGLKSFFNYLIFEDYRADNPMDLIEAPKIGRKLPDTLSVEEINDLIDA 124 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + L +K RN A+L LYGCGLR+SE +L ++ + +R+ GKGDK R V Sbjct: 125 IDL-----SKPEGERNRAMLETLYGCGLRVSELTNLRLSDLFFKEDFIRVTGKGDKQRFV 179 Query: 201 PLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 P+ +K I Y D LN+ + LF RG+ L + I+QL +GL Sbjct: 180 PISNINKKYINIYKDEIRNHLNIKKGFEDILFLNRRGRQLTRAMIFTIIKQLAETIGLKK 239 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + + HTLRHSFATHLL NG DLR+IQ +LGH ++TT++Y +++ K+ + ++ + H Sbjct: 240 TISPHTLRHSFATHLLENGADLRAIQQMLGHESITTTEVYVHIDRKH----LSQVIENYH 295 Query: 319 P 319 P Sbjct: 296 P 296 >gi|77163851|ref|YP_342376.1| site-specific tyrosine recombinase XerC [Nitrosococcus oceani ATCC 19707] gi|254435837|ref|ZP_05049344.1| tyrosine recombinase XerC [Nitrosococcus oceani AFC27] gi|76882165|gb|ABA56846.1| tyrosine recombinase XerC subunit [Nitrosococcus oceani ATCC 19707] gi|207088948|gb|EDZ66220.1| tyrosine recombinase XerC [Nitrosococcus oceani AFC27] Length = 300 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 99/313 (31%), Positives = 164/313 (52%), Gaps = 20/313 (6%) Query: 16 KERQNWLQ----NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71 +E+Q W+Q +L+ ERGLS T+ SY D + + F + I ++L + Sbjct: 3 EEQQIWIQKFFTHLQYERGLSPQTVVSYRRDLAKAIAFCG-----RNGIGNWQELDAQRV 57 Query: 72 RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131 RA + + RS++R LS ++SF YL++ I + + K +LP +L+ Sbjct: 58 RALVVAHHQAGLSGRSIQRLLSALRSFYVYLQRENIVDHNPAQGISAPKGKRALPPSLDV 117 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 Q L++ + + R+ AIL L Y GLR++E + L + D + +R+ Sbjct: 118 DQTAQLLN------TQPCSDLLLRDQAILELFYSSGLRLAELVGLNLSALDLDTALVRVV 171 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 GKG K R VPL + A+L + + +N + Q +F G+ L+P Q+ +R Sbjct: 172 GKGAKTREVPLGRRAKVALLAWLPVRAGWINQS-QEAVFITRHGRRLSPRAVQKRLRLWG 230 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 G ++ H LRH+FA+HLL + GDLR++Q +LGH +STTQIYT+++ ++ + Sbjct: 231 LRQGFDVAIHPHRLRHAFASHLLESSGDLRAVQELLGHADISTTQIYTHLDFQH----LA 286 Query: 312 EIYDQTHPSITQK 324 +IYDQTHP +K Sbjct: 287 KIYDQTHPRARKK 299 >gi|332799335|ref|YP_004460834.1| Tyrosine recombinase xerC [Tepidanaerobacter sp. Re1] gi|332697070|gb|AEE91527.1| Tyrosine recombinase xerC [Tepidanaerobacter sp. Re1] Length = 295 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 100/303 (33%), Positives = 162/303 (53%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +N+LQ L +E+GL+K T+ +Y D + ++ +L +KIT I + + I +++ Sbjct: 6 ENFLQYLSVEKGLAKNTIDAYRRDLKSYIYYLK---TKKIT--NINSTNRSTIASYLLLM 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S+ R+ + IKSF ++L I +E +N+ K LP+ L+ ++ Sbjct: 61 QKNGKASSSISRACAAIKSFYQFLFMEHIISEDPTVNLDAPKLEQRLPKVLSVEEI---- 116 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL + R+ ++L LLY G+R+SE +S++ +++ + LR GKG K R Sbjct: 117 -EKLLCQPDMANPLGIRDRSMLELLYATGMRVSELISISVEDVNLEMGFLRCVGKGSKER 175 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 IVP+ S+ L+ Y L + LN + LF +G + F + I++ + G+ Sbjct: 176 IVPI-GSIAVKYLKLYTLDARNKILNGKKSKILFLNRQGSAMTRQGFWKIIKKYSQQAGI 234 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 T HT RHSFATHLL NG DLR +Q ILGH +STTQIYT++ + + E+YD Sbjct: 235 NKKITPHTFRHSFATHLLENGADLRVVQEILGHSDISTTQIYTHITR----NKIKEVYDN 290 Query: 317 THP 319 THP Sbjct: 291 THP 293 >gi|329571616|gb|EGG53297.1| tyrosine recombinase XerC [Enterococcus faecalis TX1467] Length = 298 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 98/322 (30%), Positives = 163/322 (50%), Gaps = 29/322 (9%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 ME N PE+ + L+ +ERG S+ T ++Y+ D + F FL + +T+ Sbjct: 1 MEEKNWPELFARYLI-----------VERGYSEKTKKAYQEDIQHFFSFLKTSGNDYLTV 49 Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 + + ++RA++S+ Q+ S+ R ++ ++SF ++L K + E+ + K Sbjct: 50 EHL------DVRAYLSELYDQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKK 103 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 K LPR EK+ + L ++ + +D RN A+L +LYG G+R+SE +LT Sbjct: 104 KQLRLPRFFYEKEM-----DALFESAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVDA 158 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKP 237 + S L + GKG+K R VP + A+ +Y + L Q +F G+ Sbjct: 159 VDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENSRALLMTKYQKKHPYVFVNHHGEQ 218 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + P + + QL + L H LRH+FATHLL+NG D+R++Q +LGH LSTTQI Sbjct: 219 ITPTGIEYVLNQLIKKSSLNAEIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQI 278 Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319 Y +V ++ + + Y HP Sbjct: 279 YAHVTKES----LQKNYRTFHP 296 >gi|312872390|ref|ZP_07732460.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2062A-h1] gi|312873969|ref|ZP_07734005.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2052A-d] gi|312875440|ref|ZP_07735443.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2053A-b] gi|311088951|gb|EFQ47392.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2053A-b] gi|311090518|gb|EFQ48926.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2052A-d] gi|311092213|gb|EFQ50587.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2062A-h1] Length = 296 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 98/307 (31%), Positives = 166/307 (54%), Gaps = 20/307 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L+ +IERGLS TL SY D L + +F IT + L I +F+++ Sbjct: 6 EDYLRFAQIERGLSNNTLLSYRQD---LLEYFSFLKSLGITTWEVDALI---IDSFLAQE 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + S+ R LS ++ F ++L ++ + + +L + + KK LP AL+ + L+ Sbjct: 60 RDKGKAIASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPIALSTTEVTKLI 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + T + R+ AIL LY G+R+SE ++L +I ++ +++ GKG K R Sbjct: 120 N-----MPDTTTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQR 174 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 ++P+ +V + ++ Y + + L + +F RG + + I++ + Sbjct: 175 LIPI-SNVAMSWIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLA 233 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ + T HTLRH+FATHLL NG DLR +Q ILGH +STTQIYTN+ K+ +M++Y Sbjct: 234 GINKNVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQKH----IMDVY 289 Query: 315 DQTHPSI 321 +THP I Sbjct: 290 KRTHPRI 296 >gi|288555956|ref|YP_003427891.1| integrase/recombinase [Bacillus pseudofirmus OF4] gi|288547116|gb|ADC50999.1| integrase/recombinase [Bacillus pseudofirmus OF4] Length = 295 Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 97/305 (31%), Positives = 161/305 (52%), Gaps = 15/305 (4%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 K+ +L ++IERGL++ T+QSY D + FL + I IQT + ++ I ++ Sbjct: 3 KDVSEFLHYIQIERGLAENTIQSYRRDLLNYAKFL----QNVIDIQTFKDVTRHMIVDYL 58 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 + Q + ++ R+++ I++F ++L + K++ + +++ K S LP+ L+ ++ Sbjct: 59 FFLKEQGRAEATIARTIASIRAFHQFLLREKLSEQDPSVHLDIPKASKRLPKVLSLEEVE 118 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L+ T + RN A++ LY G+R+SE ++L + +R GKG+ Sbjct: 119 ALL------TISGQDHLSIRNRAMMETLYATGMRVSELINLKLTDTHLSMGFVRCIGKGN 172 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 K RI+PL KA+ Y + L N +F G+PL F + +++L Sbjct: 173 KERIIPLGQQATKALQLYLEQARSTMLKKNRHEYVFVNHYGRPLTRQGFWKIVKKLAEAA 232 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 + T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V M ++Y Sbjct: 233 KIEKELTPHTLRHSFATHLLENGADLRAVQEMLGHVDISTTQIYTHVTKTR----MKDVY 288 Query: 315 DQTHP 319 Q HP Sbjct: 289 AQYHP 293 >gi|269792633|ref|YP_003317537.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100268|gb|ACZ19255.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 297 Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 94/302 (31%), Positives = 163/302 (53%), Gaps = 25/302 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L+ L +ER S T Q+Y D +++ F A + + + + F++ Sbjct: 15 ESFLEYLSLERAFSPNTCQAYRRDLSKYVSFCAERGRDPVPPEV------DTVSLFLASL 68 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R+Q S++R+ + IKSF ++L + + + + M K + +P L E + L L+ Sbjct: 69 RSQGAAKSSVQRAAACIKSFSRFLGE--VGEDPGKVPMLP-DKPSPMPAILTEGEVLRLL 125 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + T+ + D R+ A++ LLYGCGLR SE SLT +++ T+R++GKGDK+R Sbjct: 126 EA----TAGDAPG-DLRDRAMIELLYGCGLRASELCSLTMKDLDLSSGTVRVRGKGDKVR 180 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 ++PL+ R A+ Y + Q P+F+G RG P + + I++ R + Sbjct: 181 VLPLVGETRSALERY-----LKVRGTHQGPIFQGDRGGPFRREMLWKMIQRRGRQACIAA 235 Query: 259 STT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 S H LRHS ATHLL G DLR++Q +LGH + TT++YT+ + + + ++YD++ Sbjct: 236 SRLHPHILRHSCATHLLRRGMDLRTLQCLLGHSSVRTTEVYTHFDLE-----LRDVYDRS 290 Query: 318 HP 319 HP Sbjct: 291 HP 292 >gi|257887688|ref|ZP_05667341.1| phage integrase [Enterococcus faecium 1,141,733] gi|257823742|gb|EEV50674.1| phage integrase [Enterococcus faecium 1,141,733] Length = 301 Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 102/310 (32%), Positives = 160/310 (51%), Gaps = 27/310 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +L+ L +ERG S+ T ++YE D F FL E+ + + Y +R ++S Sbjct: 8 QKFLRYLIVERGYSEKTKEAYEEDILHFKHFL-----EESGDADLLKAEYFTVRVYLSAL 62 Query: 79 RTQK--IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN-SLPRALNEKQAL 135 + S+ R ++ ++SF +YL K ++ E N + +LKK N LPR E + Sbjct: 63 ADHRPSYSRNSISRKIASLRSFYQYLLKEEVIKE-NPFSYVHLKKKNLRLPRFFYENEMQ 121 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L D+V ++ +D RN A+L +LYG G+R+SE +L +I D + I GKG+ Sbjct: 122 ALFDSVAGDST-----LDLRNRALLEVLYGSGIRLSECSNLLVSDIDFDSEVMLIHGKGN 176 Query: 196 KIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 K R PL + A+ EY+ + + +I +F GKP+ P + + Q Sbjct: 177 KERYAPLGSFAQDALQEYFTEGRQVLMTKYHEEHDI---VFVNHHGKPITPTGIEYVLNQ 233 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 + + L H LRH+FATHLL+NG DLR++Q +LGH LSTTQIY +V ++ Sbjct: 234 IIKKSSLDSDIHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKES---- 289 Query: 310 MMEIYDQTHP 319 + + Y HP Sbjct: 290 LQKNYRSFHP 299 >gi|259500665|ref|ZP_05743567.1| integrase/recombinase XerD [Lactobacillus iners DSM 13335] gi|259168049|gb|EEW52544.1| integrase/recombinase XerD [Lactobacillus iners DSM 13335] Length = 297 Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 97/307 (31%), Positives = 165/307 (53%), Gaps = 20/307 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L+ +IERGLS TL SY D L + +F IT + L I +F ++ Sbjct: 7 EDYLRFAQIERGLSNNTLLSYRQD---LLEYFSFLKSLGITTWEVDALI---IDSFFAQE 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + S+ R LS ++ F ++L ++ + + +L + + KK LP A++ + L+ Sbjct: 61 RDKGKAIASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPTAMSTTEVTKLI 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + T + R+ AIL LY G+R+SE ++L +I ++ +++ GKG K R Sbjct: 121 N-----MPDTTTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQR 175 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 ++P+ +V + ++ Y + + L + +F RG + + I++ + Sbjct: 176 LIPI-SNVAMSWIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLA 234 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ + T HTLRH+FATHLL NG DLR +Q ILGH +STTQIYTN+ K+ +M++Y Sbjct: 235 GINKNVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQKH----IMDVY 290 Query: 315 DQTHPSI 321 +THP I Sbjct: 291 KRTHPRI 297 >gi|300173433|ref|YP_003772599.1| tyrosine recombinase XerD [Leuconostoc gasicomitatum LMG 18811] gi|299887812|emb|CBL91780.1| tyrosine recombinase XerD [Leuconostoc gasicomitatum LMG 18811] Length = 298 Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 96/301 (31%), Positives = 160/301 (53%), Gaps = 16/301 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L + IERGLS T++SY D +QF +++ T EK+ + I ++ I +++ R Sbjct: 11 DYLHYIRIERGLSDNTIKSYHQDLQQFALYV---TTEKLQLNDIDHIA---ILTWLNNLR 64 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q + S+ R ++ ++ F YL + + + + ++R KK+ LP L + Sbjct: 65 EQGKSNNSVIRMVTSLRKFFGYLLQEGLILHNPMTDVRPPKKAEHLPSVLTVAEI----- 119 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + LL ET + RN ++ +LY GLR+SE ++L ++ ++ GKGDK RI Sbjct: 120 DALLAVPTETTPLGVRNRTLIEVLYATGLRVSELVNLKMSDLHLQLGLIQTIGKGDKERI 179 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +P+ + +Y+ L + P +F RG L+ + I++L G+ Sbjct: 180 IPIGEVAADWLEKYFSNSRLLLLKGNESPFVFLNDRGNQLSRQGVWKIIKKLVLLAGITK 239 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + HTLRHSFATH+L NG DLR +Q +LGH +STTQIYT+++ K + E+YD H Sbjct: 240 DVSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISKKR----LSEVYDNFH 295 Query: 319 P 319 P Sbjct: 296 P 296 >gi|77919114|ref|YP_356929.1| site-specific recombinase [Pelobacter carbinolicus DSM 2380] gi|77545197|gb|ABA88759.1| tyrosine recombinase XerD subunit [Pelobacter carbinolicus DSM 2380] Length = 295 Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 103/300 (34%), Positives = 153/300 (51%), Gaps = 15/300 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L +E+GLS TL +Y D ++L FL+ + + Q+S + AF+S + Sbjct: 8 FLNYLVVEKGLSANTLDAYGRDLARYLEFLSVKG-----VTGLEQVSPPMVVAFLSALKE 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + RS R L ++ F ++L + T + + K LP+ L + Sbjct: 63 RGLSARSRARKLVSLRMFHRFLLAENLATTNPAAQVAAPKSFAKLPQILTPDEV-----E 117 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LL T D R+ A+L +LY GLR+SE + LT Q++ D L GK K RIV Sbjct: 118 SLLSAPGNTTCFDLRDKAMLEILYATGLRVSELVGLTLQDLQLDVGYLTAFGKRAKQRIV 177 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 PL + R+A+LEY +L + LF G L F + +++ G+ + Sbjct: 178 PLGDAAREAVLEYLSHGRGELAGEVGSGFLFLNRSGNGLTRQGFWKMMKRRAMEAGINKN 237 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T HTLRHSFATHLL NG DLR++Q++LGH +STTQIYT+V + M I+ Q HP Sbjct: 238 ITPHTLRHSFATHLLDNGADLRAVQAMLGHADISTTQIYTHVTRER----MKVIHQQHHP 293 >gi|169827113|ref|YP_001697271.1| tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41] gi|168991601|gb|ACA39141.1| Tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41] Length = 299 Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 93/302 (30%), Positives = 158/302 (52%), Gaps = 15/302 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + ++ +++E+ S T++ YE D FL FL ++ I + + Y R +++K Sbjct: 10 EQFMLYIQVEKNFSVHTVREYESDLLDFLAFL-----QREGINDLASVEYIHARLYVTKL 64 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 +K S+ R +S I+SF ++L ++ + ++ + KK + LP E++ + L Sbjct: 65 YDEKRARASISRKISSIRSFFRFLNRQYGFDDGAFRSLYHPKKESRLPNFFYEEELMQLF 124 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D +T + K + RN AIL LLY G+R+SE S+ +++ S +R+ GKG K R Sbjct: 125 DA---NTGDDLKSL--RNMAILELLYATGIRVSELTSIQVKDVDFHYSIIRVMGKGRKER 179 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 I+P A+L+Y + P + LF +RG L P + + ++ L Sbjct: 180 IIPFGQFASLAMLDYIEQARPRLMKKTNHQQLFVNMRGGELTPRGVRHVLNEMIDKASLH 239 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 H LRH+FATHLL+NG DLR++Q +LGH LS+TQ+YT+V ++ + + Y Sbjct: 240 TKIYPHMLRHTFATHLLNNGADLRTVQELLGHSHLSSTQVYTHVTKEH----LRQTYMNA 295 Query: 318 HP 319 HP Sbjct: 296 HP 297 >gi|254481807|ref|ZP_05095050.1| tyrosine recombinase XerD [marine gamma proteobacterium HTCC2148] gi|214037936|gb|EEB78600.1| tyrosine recombinase XerD [marine gamma proteobacterium HTCC2148] Length = 298 Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 106/306 (34%), Positives = 161/306 (52%), Gaps = 19/306 (6%) Query: 17 ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 E + ++ + +E+GLS TL SY D RQF +LA +++ I T R E++A++ Sbjct: 7 EIERYIDAMWMEKGLSDNTLSSYRRDLRQFNDWLA-KSKKSSVISTDR----AELQAYLG 61 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 R Q RS R +S + F KYL + T L++ + K LPR+L+E Sbjct: 62 ARLQQGQSQRSTARFMSCARGFYKYLLREGRLTVDPTLDVDSPKLGRPLPRSLSEGDVDK 121 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L+D L + ++ R+ +L +LY CGLR+SE L I +Q +R+ GKG K Sbjct: 122 LLDAPDLDIA-----LEYRDRTMLEMLYACGLRVSELTGLQINQISINQGVVRVFGKGSK 176 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRY 253 R+VP+ A L+ Y P L +P +F RG+ + F I+ + Sbjct: 177 ERLVPMGEEA-LAWLQGYLAGP-RAELLKGIPSDVVFPSKRGRQMTRQTFWYRIKIYAKR 234 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ + + HTLRH+FATHLL++G DLR +Q +LGH L+TTQIYT+V + M E+ Sbjct: 235 AGIKQNLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLTTTQIYTHVAKQR----MQEL 290 Query: 314 YDQTHP 319 + Q HP Sbjct: 291 HAQHHP 296 >gi|302191354|ref|ZP_07267608.1| tyrosine recombinase XerD [Lactobacillus iners AB-1] gi|312871387|ref|ZP_07731482.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 3008A-a] gi|311093040|gb|EFQ51389.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 3008A-a] Length = 296 Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 97/307 (31%), Positives = 165/307 (53%), Gaps = 20/307 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L+ +IERGLS TL SY D L + +F IT + L I +F ++ Sbjct: 6 EDYLRFAQIERGLSNNTLLSYRQD---LLEYFSFLKSLGITTWEVDALI---IDSFFAQE 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + S+ R LS ++ F ++L ++ + + +L + + KK LP A++ + L+ Sbjct: 60 RDKGKAIASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPTAMSTTEVTKLI 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + T + R+ AIL LY G+R+SE ++L +I ++ +++ GKG K R Sbjct: 120 N-----MPDTTTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQR 174 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 ++P+ +V + ++ Y + + L + +F RG + + I++ + Sbjct: 175 LIPI-SNVAMSWIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLA 233 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ + T HTLRH+FATHLL NG DLR +Q ILGH +STTQIYTN+ K+ +M++Y Sbjct: 234 GINKNVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQKH----IMDVY 289 Query: 315 DQTHPSI 321 +THP I Sbjct: 290 KRTHPRI 296 >gi|262089688|gb|ACY24783.1| XerD tyrosine recombinase [uncultured organism] Length = 323 Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 101/315 (32%), Positives = 158/315 (50%), Gaps = 19/315 (6%) Query: 6 LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65 +P + +L+ E +L + +E+GLS T +SY D QF ++L + I + Sbjct: 25 VPTVADSQLIAE---YLDAIWMEKGLSHNTQESYRRDLSQFAMWLNQQGRQLIGVDPALV 81 Query: 66 LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 Y +IR QK+ R+ R LS ++ +YL + +ES + + N K S SL Sbjct: 82 QDYLDIRL------QQKLSSRTSARFLSCVRGLYRYLLRESRISESPVALIDNPKLSRSL 135 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 P++L+E LL + + R+ +L +LY CGLR++E + LT I Q Sbjct: 136 PKSLSETDV-----EALLAAPDLSDPVGLRDRTMLEVLYACGLRVTELVELTMPQINLRQ 190 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 + +R+ GKG K R++P+ ++ Y + P LN +F R +P+ F Sbjct: 191 NVVRVMGKGSKERLIPMGEEAAAWLVRYLREARPVLLNNMPDEVVFPSTRAQPMTRQTFW 250 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 I+ G+ + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V Sbjct: 251 YRIKHWAMVAGIKKDLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKL 310 Query: 305 NGGDWMMEIYDQTHP 319 M + + Q HP Sbjct: 311 R----MKQQHAQHHP 321 >gi|257898819|ref|ZP_05678472.1| phage integrase [Enterococcus faecium Com15] gi|257836731|gb|EEV61805.1| phage integrase [Enterococcus faecium Com15] Length = 301 Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 102/310 (32%), Positives = 159/310 (51%), Gaps = 27/310 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +L+ L +ERG S+ T ++YE D F FL E+ + + Y +R ++S Sbjct: 8 QKFLRYLIVERGYSEKTKEAYEEDILHFKHFL-----EESGDADLLKAEYFTVRVYLSAL 62 Query: 79 RTQK--IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN-SLPRALNEKQAL 135 + S+ R ++ ++SF +YL K ++ E N + +LKK N LPR E + Sbjct: 63 ADHRPSYSRNSISRKIASLRSFYQYLLKEEVIKE-NPFSYVHLKKKNLRLPRFFYEDEMQ 121 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L D+V + +D RN A+L +LYG G+R+SE +L +I D + I GKG+ Sbjct: 122 ALFDSVAGDSP-----LDLRNRALLEVLYGSGIRLSECSNLLVSDIDFDSEVMLIHGKGN 176 Query: 196 KIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 K R PL + A+ EY+ + + +I +F GKP+ P + + Q Sbjct: 177 KERYAPLGSFAQDALQEYFTEGRQVLMTKYHEEHDI---VFVNHHGKPITPTGIEYVLNQ 233 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 + + L H LRH+FATHLL+NG DLR++Q +LGH LSTTQIY +V ++ Sbjct: 234 MIKKSSLDSDIHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKES---- 289 Query: 310 MMEIYDQTHP 319 + + Y HP Sbjct: 290 LQKNYRSFHP 299 >gi|293570278|ref|ZP_06681347.1| tyrosine recombinase XerC [Enterococcus faecium E980] gi|291609685|gb|EFF38946.1| tyrosine recombinase XerC [Enterococcus faecium E980] Length = 301 Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 102/310 (32%), Positives = 159/310 (51%), Gaps = 27/310 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +L+ L +ERG S+ T ++YE D F FL E+ + + Y +R ++S Sbjct: 8 QKFLRYLIVERGYSEKTKEAYEEDILHFKHFL-----EESGDADLLKAEYFTVRVYLSAL 62 Query: 79 RTQK--IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN-SLPRALNEKQAL 135 + S+ R ++ ++SF +YL K ++ E N + +LKK N LPR E + Sbjct: 63 ADHRPSYSRNSISRKIASLRSFYQYLLKEEVIKE-NPFSYVHLKKKNLRLPRFFYENEMQ 121 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L D+V + +D RN A+L +LYG G+R+SE +L +I D + I GKG+ Sbjct: 122 ALFDSVAGDSP-----LDLRNRALLEVLYGSGIRLSECSNLLVSDIDFDSEVMLIHGKGN 176 Query: 196 KIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 K R PL + A+ EY+ + + +I +F GKP+ P + + Q Sbjct: 177 KERYAPLGSFAQDALQEYFTEGRQVLMTKYHEEHDI---VFVNHHGKPITPTGIEYVLNQ 233 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 + + L H LRH+FATHLL+NG DLR++Q +LGH LSTTQIY +V ++ Sbjct: 234 MIKKSSLDSDIHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKES---- 289 Query: 310 MMEIYDQTHP 319 + + Y HP Sbjct: 290 LQKNYRSFHP 299 >gi|227503694|ref|ZP_03933743.1| site-specific tyrosine recombinase XerD [Corynebacterium accolens ATCC 49725] gi|227075730|gb|EEI13693.1| site-specific tyrosine recombinase XerD [Corynebacterium accolens ATCC 49725] Length = 296 Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 98/301 (32%), Positives = 148/301 (49%), Gaps = 15/301 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q WL +L +ERG+S TL +Y D R+++ +LA +Q +RQ++ + A++ Sbjct: 9 QTWLNHLAVERGVSANTLSNYRRDIRRYVDWLAVNE-----VQDLRQVTRPMVEAYLKDL 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + + S R+L + K+ + LP L+ + L+ Sbjct: 64 R-ETMAVSSANRALIVARGLHKFAVAEGEIDSDVAAEVSPPSTGQHLPETLSVDEVTQLI 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + T ET +D R+ A+L +LYG G RISE +SL ++ L + GKGDK R Sbjct: 123 EA----TPTETP-VDLRDRALLEVLYGTGARISEVISLNVDDVATGDDVLVLHGKGDKER 177 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +VPL R+AI Y L LF RG L+ I+ + L Sbjct: 178 LVPLGSHARQAIDAYLVRARPVLGKGKTAALFLNTRGGALSRQSAWSIIKTAAQRSQLDK 237 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 S + HTLRHSFATHLL G D+R++Q +LGH ++TTQIYT+V + D + E++ H Sbjct: 238 SISPHTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTA----DSLREVWRTAH 293 Query: 319 P 319 P Sbjct: 294 P 294 >gi|192360546|ref|YP_001981926.1| tyrosine recombinase XerD [Cellvibrio japonicus Ueda107] gi|190686711|gb|ACE84389.1| tyrosine recombinase XerD [Cellvibrio japonicus Ueda107] Length = 299 Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 102/282 (36%), Positives = 151/282 (53%), Gaps = 13/282 (4%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L L +E+GLS+ T +SY D QF +LA + T TE++A+++ R Q Sbjct: 13 LDQLWMEKGLSENTQESYRRDLEQFAGWLAAGQGPDLLAVTA-----TEVQAYLAWRHQQ 67 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM-RNLKKSNSLPRALNEKQALTLVDN 140 + RS R LS ++ F + L+ R+ N L + N K S SLP++L+E V+N Sbjct: 68 HLSSRSTARFLSCLRGFYR-LQIREGHLHDNPLALVENPKLSRSLPKSLSESD----VEN 122 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LL + R+ +L +LY CGLR+SE + LT + Q+ +R+ GKG K R+V Sbjct: 123 -LLSAPDVDDPVGLRDKTMLEVLYACGLRVSELVGLTMSQVNLRQNVVRVMGKGSKERLV 181 Query: 201 PLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ + Y + P LN +F RG+P+ F I+ + G+ Sbjct: 182 PMGEEAAAWLQRYLREARPVLLNNFPDEVVFPSSRGQPMTRQTFWYRIKHWAQVAGINKP 241 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V Sbjct: 242 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHV 283 >gi|260062440|ref|YP_003195520.1| putative tyrosine recombinase [Robiginitalea biformata HTCC2501] gi|88784003|gb|EAR15174.1| putative tyrosine recombinase [Robiginitalea biformata HTCC2501] Length = 300 Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 104/302 (34%), Positives = 161/302 (53%), Gaps = 16/302 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L L +ERGLS+ +++SY D R+ +LA E IT ++I + +I AFI Sbjct: 9 DYLHYLRLERGLSENSVRSYRRDVRKLAGYLA-ENEPGITPKSIDR---KDIEAFIHHVG 64 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 T + RS R +SG+K F YL I N +L ++ L R L + ++ +D Sbjct: 65 TD-LKARSQARLISGLKGFFGYL----IFEGYRKDNPMDLIEAPKLGRKLPDTLSVEEID 119 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 ++ + RN AIL LYGCGLR+SE L L ++ D+ +++ GKG K R Sbjct: 120 RLVAEIDRSAPEGE-RNLAILETLYGCGLRVSELLGLRLSDLFFDEGFIKVTGKGSKDRF 178 Query: 200 VPLLPSVRKAILEYY-DLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 VP+ P R+ IL Y ++ P + +F RG+ L+ + IR L GL Sbjct: 179 VPIGPYNRECILRYIREVRPHQQPQAGFEDVVFLNRRGRGLSRAMIFTIIRDLAARAGLR 238 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + + HT RHSFATHLL NG D+R+IQ +LGH ++TT++Y +V+ + + E+ + Sbjct: 239 KNVSPHTFRHSFATHLLQNGADIRAIQQMLGHESITTTEVYMHVDRTH----LAEVVREH 294 Query: 318 HP 319 HP Sbjct: 295 HP 296 >gi|25028109|ref|NP_738163.1| site-specific tyrosine recombinase XerD [Corynebacterium efficiens YS-314] gi|259507166|ref|ZP_05750066.1| tyrosine recombinase XerD [Corynebacterium efficiens YS-314] gi|34222804|sp|Q7ZAN4|XERD_COREF RecName: Full=Tyrosine recombinase xerD gi|23493393|dbj|BAC18363.1| putative integrase/recombinase [Corynebacterium efficiens YS-314] gi|259165247|gb|EEW49801.1| tyrosine recombinase XerD [Corynebacterium efficiens YS-314] Length = 304 Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 96/306 (31%), Positives = 148/306 (48%), Gaps = 16/306 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + WL +L +ERGLS TL SY D ++ +L E I I +++ + A++ Sbjct: 8 RTWLTHLAVERGLSSNTLSSYRRDIERYCDWL-----EAARIGDISEIATATVEAYVMDL 62 Query: 79 RTQKIGDRSLKRSLSG-----IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 R G L S +G ++ K+ + ++ LP L+ + Sbjct: 63 RRGVDGRAPLSASSAGRALIVVRGLHKFALAEGLVGVDVAADVSPPSTGRHLPDTLSVPE 122 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 TL+D + TS +D R+ A+L +LYG G RISEA+ L ++ LRI GK Sbjct: 123 VETLIDAI--PTSDIATPVDIRDRALLEVLYGTGARISEAVGLMVDDVTHTPEVLRITGK 180 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 G K R+VP R A+ +Y L+ LF RG PL+ +++ Sbjct: 181 GSKQRMVPYGSMARAAVDDYLVRARPALSKGRTPVLFLNQRGGPLSRQSAWAALKKAAGR 240 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ + HTLRHSFATHLL G D+R +Q +LGH ++TTQIYT+V ++N + ++ Sbjct: 241 AGIAKDISPHTLRHSFATHLLEGGADVRVVQELLGHSSVTTTQIYTHVTAEN----LRQV 296 Query: 314 YDQTHP 319 + HP Sbjct: 297 WRSAHP 302 >gi|308174137|ref|YP_003920842.1| site-specific tyrosine recombinase [Bacillus amyloliquefaciens DSM 7] gi|307607001|emb|CBI43372.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus amyloliquefaciens DSM 7] gi|328554079|gb|AEB24571.1| site-specific tyrosine recombinase XerD [Bacillus amyloliquefaciens TA208] gi|328912472|gb|AEB64068.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus amyloliquefaciens LL3] Length = 296 Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 93/302 (30%), Positives = 158/302 (52%), Gaps = 14/302 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++++ + +ERGLS+ T+ SYE D + + +FL E + I + ++ I ++ Sbjct: 6 KDFIHYVRVERGLSQNTMMSYERDLKSYSLFLT----ETLQITSWNDVTRLHIIQYLKHL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + ++ R L+ I+SF ++L + K + +++ K +LP+ L ++ L+ Sbjct: 62 KDSGKSGKTSARHLASIRSFHQFLLREKAADKDPSVHIETQKTERALPKVLALQEVERLL 121 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D L + R+ A+L LLY G+R+SE + L ++ +R GKG K R Sbjct: 122 DTPKLDSP-----FGLRDKAMLELLYATGIRVSEMIELKLSDVHLTMGFVRCFGKGRKER 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 IVP+ + AI Y + L N+ LF G+ ++ F + ++++ G+ Sbjct: 177 IVPIGEAASHAIEAYIEKARGKLLKKNVTEALFLNHHGRQISRQGFWKNLKKIALEAGIK 236 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V+ + ++Y Q Sbjct: 237 KELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKDVYKQY 292 Query: 318 HP 319 HP Sbjct: 293 HP 294 >gi|312951578|ref|ZP_07770474.1| tyrosine recombinase XerC [Enterococcus faecalis TX0102] gi|310630544|gb|EFQ13827.1| tyrosine recombinase XerC [Enterococcus faecalis TX0102] Length = 299 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 101/322 (31%), Positives = 162/322 (50%), Gaps = 28/322 (8%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 ME N PE+ + L+ +ERG S+ T ++Y+ D + F FL T Sbjct: 1 MEEKNWPELFARYLI-----------VERGYSEKTKKAYQEDIQHFFSFLK--TSGNDNY 47 Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 T+ L E+RA++S+ Q+ S+ R ++ ++SF ++L K + E+ + K Sbjct: 48 LTVEHL---EVRAYLSELYDQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKK 104 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 K LPR EK+ + L ++ + +D RN A+L +LYG G+R+SE +LT Sbjct: 105 KQLRLPRFFYEKEM-----DALFESAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVDA 159 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKP 237 + S L + GKG+K R VP + A+ +Y + L Q +F G+ Sbjct: 160 VDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGEQ 219 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + P + + QL + L + H LRH+FATHLL+NG D+R++Q +LGH LSTTQI Sbjct: 220 ITPTGIEYVLNQLIKKSSLNVEIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQI 279 Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319 Y +V ++ + + Y HP Sbjct: 280 YAHVTKES----LQKNYRTFHP 297 >gi|237748814|ref|ZP_04579294.1| site specific integrase/recombinase [Oxalobacter formigenes OXCC13] gi|229380176|gb|EEO30267.1| site specific integrase/recombinase [Oxalobacter formigenes OXCC13] Length = 317 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 105/328 (32%), Positives = 169/328 (51%), Gaps = 36/328 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L +R LS T+ +Y D + LI LA T+ + LS ++IR F SK Sbjct: 5 YLDTLTGQRQLSDQTVINYRRDLEE-LIELANQTK-------LATLSSSDIRRFTSKLHA 56 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + RS+ R LS + F ++L + +T+ + + ++ KK+ LP+AL+ A+ +V + Sbjct: 57 KGLNPRSISRKLSAWRGFYRWLIEENLTSANPVEDIHAPKKNKPLPKALSVDDAVRVVAS 116 Query: 141 VLLHTSHETKWIDAR-----NSAILYLLYGCGLRISEALSLTPQNIMD-----------D 184 TS + R N A+ LLY GLR+SE SL I D + Sbjct: 117 ----TSEKEAVEQDRATLLCNHAMFELLYSSGLRVSELTSLDIHAIKDTGYRSASWINLE 172 Query: 185 QSTLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240 + + + GKG+K RIVP+ + ++R +L L L LF RG+ ++P Sbjct: 173 EKEVTVTGKGNKTRIVPIGDAAVHAIRNWLLTRETLIDPSLQQEHTNALFINSRGRRISP 232 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 Q ++ LGLP+S H LRHSFA+H+L + GDLR++Q +LGH +++TQIYT Sbjct: 233 RTVQLRLKSHANALGLPVSVHPHVLRHSFASHILQSSGDLRAVQEMLGHSSIASTQIYTA 292 Query: 301 VNSKNGGDWMMEIYDQTHPSITQKDKKN 328 ++ + + ++YD HP K++KN Sbjct: 293 LDFQR----LAQVYDAAHPRAKTKNEKN 316 >gi|257896182|ref|ZP_05675835.1| phage integrase [Enterococcus faecium Com12] gi|293377182|ref|ZP_06623390.1| tyrosine recombinase XerC [Enterococcus faecium PC4.1] gi|257832747|gb|EEV59168.1| phage integrase [Enterococcus faecium Com12] gi|292644202|gb|EFF62304.1| tyrosine recombinase XerC [Enterococcus faecium PC4.1] Length = 301 Score = 145 bits (366), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 102/310 (32%), Positives = 159/310 (51%), Gaps = 27/310 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +L+ L +ERG S+ T ++YE D F FL E+ + + Y +R ++S Sbjct: 8 QKFLRYLIVERGYSEKTKEAYEEDILHFKHFL-----EESGDADLLKAEYFTVRVYLSAL 62 Query: 79 RTQK--IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN-SLPRALNEKQAL 135 + S+ R ++ ++SF +YL K ++ E N + +LKK N LPR E + Sbjct: 63 ADHRPSYSRNSISRKIASLRSFYQYLLKEEVIKE-NPFSYVHLKKKNLRLPRFFYENEMQ 121 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L D+V + +D RN A+L +LYG G+R+SE +L +I D + I GKG+ Sbjct: 122 ALFDSVAGDSP-----LDLRNRALLEVLYGSGIRLSECSNLLVSDIDFDSEVMLIHGKGN 176 Query: 196 KIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 K R PL + A+ EY+ + + +I +F GKP+ P + + Q Sbjct: 177 KERYAPLGSFAQDALQEYFTEGRQVLMTKYHEEHDI---VFVNHHGKPITPTGIEYVLNQ 233 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 + + L H LRH+FATHLL+NG DLR++Q +LGH LSTTQIY +V ++ Sbjct: 234 IIKKSSLDSDIHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKES---- 289 Query: 310 MMEIYDQTHP 319 + + Y HP Sbjct: 290 LQKNYRSFHP 299 >gi|255325630|ref|ZP_05366727.1| tyrosine recombinase XerD [Corynebacterium tuberculostearicum SK141] gi|255297240|gb|EET76560.1| tyrosine recombinase XerD [Corynebacterium tuberculostearicum SK141] Length = 296 Score = 145 bits (366), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 95/301 (31%), Positives = 152/301 (50%), Gaps = 15/301 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q WL +L +ERG+S TL +Y D R++L +L ++ +R ++ + A++ Sbjct: 9 QTWLNHLAVERGVSANTLSNYRRDVRRYLAWLG-----DNGVEDLRSVTRPMVEAYLKDL 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R+ + S R+L + K+ + + + LP L+ + L+ Sbjct: 64 RSH-MAVSSANRALIVARGLHKFAVSEGVVDVDVAVEVTPPSTGQHLPETLSVDEVTALI 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + T ET +D R+ A+L +LYG G RISE +SL ++ Q +R++GKGDK R Sbjct: 123 EA----TPTETP-VDVRDRALLEMLYGTGARISEIVSLNVDDVSSAQEVIRLRGKGDKER 177 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 IVP+ R+A+ Y L+ LF RG L+ ++ + L Sbjct: 178 IVPVGSHARQALDAYLVRARPALSKGKTPALFLNTRGGALSRQSAWTVLKTAAQRAQLGK 237 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 S + HTLRHSFATHLL G D+R++Q +LGH ++TTQIYT+V + D + E++ H Sbjct: 238 SISPHTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTA----DSLREVWRTAH 293 Query: 319 P 319 P Sbjct: 294 P 294 >gi|227551195|ref|ZP_03981244.1| site-specific recombinase XerD [Enterococcus faecium TX1330] gi|227179663|gb|EEI60635.1| site-specific recombinase XerD [Enterococcus faecium TX1330] Length = 314 Score = 145 bits (366), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 102/310 (32%), Positives = 159/310 (51%), Gaps = 27/310 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +L+ L +ERG S+ T ++YE D F FL E+ + + Y +R ++S Sbjct: 21 QKFLRYLIVERGYSEKTKEAYEEDILHFKHFL-----EESGDADLLKAEYFTVRVYLSAL 75 Query: 79 RTQK--IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN-SLPRALNEKQAL 135 + S+ R ++ ++SF +YL K ++ E N + +LKK N LPR E + Sbjct: 76 ADHRPSYSRNSISRKIASLRSFYQYLLKEEVIKE-NPFSYVHLKKKNLRLPRFFYENEMQ 134 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L D+V + +D RN A+L +LYG G+R+SE +L +I D + I GKG+ Sbjct: 135 ALFDSVAGDSP-----LDLRNRALLEVLYGSGIRLSECSNLLVSDIDFDSEVMLIHGKGN 189 Query: 196 KIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 K R PL + A+ EY+ + + +I +F GKP+ P + + Q Sbjct: 190 KERYAPLGSFAQDALQEYFTEGRQVLMTKYHEEHDI---VFVNHHGKPITPTGIEYVLNQ 246 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 + + L H LRH+FATHLL+NG DLR++Q +LGH LSTTQIY +V ++ Sbjct: 247 IIKKSSLDSDIHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKES---- 302 Query: 310 MMEIYDQTHP 319 + + Y HP Sbjct: 303 LQKNYRSFHP 312 >gi|126654062|ref|ZP_01725888.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905] gi|126589442|gb|EAZ83589.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905] Length = 299 Score = 145 bits (366), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 93/302 (30%), Positives = 157/302 (51%), Gaps = 15/302 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + ++ +++E+ S T++ YE D FL FL + I + + Y R +++K Sbjct: 10 EQFMLYIQVEKNFSVHTVREYESDLLDFLAFL-----QGEGIHDLASVEYIHARLYVTKL 64 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 +K S+ R +S I+SF ++L ++ + ++ + KK + LP E++ + L Sbjct: 65 YDEKRARASISRKISSIRSFFRFLNRQYGFDDGAFRSLYHPKKESRLPNFFYEEELMQLF 124 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D +T + K + RN AIL LLY G+R+SE S+ +++ S +R+ GKG K R Sbjct: 125 DA---NTGDDLKSL--RNMAILELLYATGIRVSELTSIQVKDVDFHYSIIRVMGKGRKER 179 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 I+P A+L+Y + P + LF +RG L P + + ++ L Sbjct: 180 IIPFGQFASLAMLDYIEQARPRLMKKTNHQQLFVNMRGGELTPRGVRHVLNEMIDKASLH 239 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 H LRH+FATHLL+NG DLR++Q +LGH LS+TQ+YT+V ++ + + Y Sbjct: 240 TKIYPHMLRHTFATHLLNNGADLRTVQELLGHSHLSSTQVYTHVTKEH----LRQTYMNA 295 Query: 318 HP 319 HP Sbjct: 296 HP 297 >gi|89898086|ref|YP_515196.1| site-specific tyrosine recombinase XerD [Chlamydophila felis Fe/C-56] gi|89331458|dbj|BAE81051.1| integrase/recombinase [Chlamydophila felis Fe/C-56] Length = 298 Score = 145 bits (366), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 101/299 (33%), Positives = 153/299 (51%), Gaps = 25/299 (8%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L ++RGLS+ ++ +Y D FL A I +I ++S + F+ + ++ Sbjct: 18 LSVDRGLSRNSISAYSQDITLFLKISA--------ITSIEEISQDSVYLFVQQLHKRQES 69 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 + +L R L +K F ++LK+ ++ ++ + K LP L K+ L+ + Sbjct: 70 ESTLARRLIALKVFFRFLKETELLDHPPLIEHPKIWKR--LPSVLTPKEVDALL--AIPK 125 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 TS + I AR+SAIL+ LY G+R+SE L ++ DD LR+ GKG K R+VPL Sbjct: 126 TSETSPMISARDSAILHTLYSTGIRVSELCGLCIGDVSDD--FLRVTGKGSKTRLVPLGE 183 Query: 205 SVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 K I Y LCPF Q P LF +RG L R I + + Sbjct: 184 RACKTIDAY--LCPFRETFQKQRPEEHHLFLSVRGHKLERSCVWRRIHHYAKQITHK-QV 240 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H+LRH+FATHLL N DLR IQ +LGH R+++T+IYT+V S D ++E + HP Sbjct: 241 SPHSLRHAFATHLLDNKADLRVIQEMLGHARIASTEIYTHVAS----DTLIENFLSHHP 295 >gi|119356400|ref|YP_911044.1| tyrosine recombinase XerC subunit [Chlorobium phaeobacteroides DSM 266] gi|119353749|gb|ABL64620.1| tyrosine recombinase XerC subunit [Chlorobium phaeobacteroides DSM 266] Length = 328 Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 95/314 (30%), Positives = 166/314 (52%), Gaps = 16/314 (5%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-EKITIQTIRQLSYTEIRAF 74 +E + +L L+ + +S+ T+ +Y D QF F+ + E + +++ Q++ +R F Sbjct: 19 REAERFLGYLKTSKNVSRHTITAYRNDLDQFFSFMQRHLELQHMSLFDPEQVTVASVRLF 78 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 + + + +S+ R L+ +KSF +YL++ + S + + + +P L E+Q Sbjct: 79 MGDLLQRGLQPKSIARKLASVKSFYRYLQETGVIKSSVLSLVSTPRYPRHVPGFLTEQQT 138 Query: 135 LTLV---DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 + D+ L + ++ R+ ++L +LYGCGLRISE + L P +I Q ++I Sbjct: 139 EKIFEQEDSGLFGSDDTFEF--HRDISVLEMLYGCGLRISELIDLCPDDINFLQGYVKIT 196 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP------LFRGIRGKPLNPGVFQR 245 GKG K RIVPL +A+ +Y+++ +N + +F RGK L P + QR Sbjct: 197 GKGQKQRIVPLGTQAAEAVRKYFEVRRNFFRINKLMDEKELNHVFVTKRGKKLYPMLVQR 256 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 ++ + H LRH+FATHLL+NG DL+S+ +LGH L+TT+IYT+V Sbjct: 257 ITKKYLMSVTEQKEKNPHLLRHTFATHLLNNGADLKSVSEMLGHSSLATTEIYTHVTFGR 316 Query: 306 GGDWMMEIYDQTHP 319 + E+Y + HP Sbjct: 317 ----LKEVYRKAHP 326 >gi|257876556|ref|ZP_05656209.1| phage integrase [Enterococcus casseliflavus EC20] gi|257810722|gb|EEV39542.1| phage integrase [Enterococcus casseliflavus EC20] Length = 296 Score = 145 bits (365), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 102/305 (33%), Positives = 160/305 (52%), Gaps = 22/305 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L L IERGLS+ T SY+ D +Q+L FL +K + +Q+ + +F+ + Sbjct: 7 DYLHYLTIERGLSQNTRASYQRDLQQYLAFL-----QKKQVTQWQQIDRVIVLSFLQSLQ 61 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 ++ R +S ++ F +YL++ ++T + ++ + KK LP L+ ++ L++ Sbjct: 62 EAGKSSATVIRMVSSLRRFHQYLRQERLTDHDPMQHIDSPKKQQKLPDTLSLQEVERLIE 121 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 T + R+ AIL ++Y GLR+SE + L ++ L+ GKGDK RI Sbjct: 122 -----TPDTRAVLGIRDRAILEVMYATGLRVSELIGLKLNDLHLSMGLLQTTGKGDKERI 176 Query: 200 VPLLPSVRKAILEYY-DLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYL 254 VPL + I Y D P+ L + P LF G L+ + ++ L R Sbjct: 177 VPLGDLAIQWIETYLSDARPY---LTRKTPDESHLFVNNHGTQLSRQGIWKNLKALVRQA 233 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ + T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT++ K M E+Y Sbjct: 234 GITKNVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR----MTEVY 289 Query: 315 DQTHP 319 Q P Sbjct: 290 KQHFP 294 >gi|189499552|ref|YP_001959022.1| integrase family protein [Chlorobium phaeobacteroides BS1] gi|189494993|gb|ACE03541.1| integrase family protein [Chlorobium phaeobacteroides BS1] Length = 330 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 98/318 (30%), Positives = 172/318 (54%), Gaps = 28/318 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKRR 79 +++ + +R S+ T ++Y D QF FL+ + EK + ++ ++R F+ Sbjct: 20 FVEYMRAQRKYSEHTCKAYSKDITQFYEFLSLQHGGEKAADPGL--VTRIDMRLFLGFLL 77 Query: 80 TQKIGDRSLKRSLSGIKSFLKYL---KKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + + +S+ R L+ +KSF YL + K++ + ++ R S ++P LNE+Q T Sbjct: 78 KKGLQPKSIARKLASVKSFYNYLLETGRIKVSVPAQVVTPRF---SKTVPGFLNEEQTET 134 Query: 137 LVDNVLL----------HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 L D++L +T +E ++ +R+ AIL LLYGCGLRISE + L + + +Q Sbjct: 135 LFDHILAAPQHLSGSSKNTRYEDEFTYSRDRAILELLYGCGLRISEVVHLEREQVNIEQG 194 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP--FDL---NLNIQLPLFRGIRGKPLNPG 241 ++I GKG+K R++PL +A+ Y+++ F + ++ +F +G + P Sbjct: 195 FMKINGKGNKQRVLPLGSYAVEALKNYFEVKRNFFRMKKGEVSAAAYVFVTKKGIGIYPV 254 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + QR ++ + H LRHSFATH+L+NG DL+S+ +LGH L+TT+IYT+V Sbjct: 255 LVQRLTKKYLSAVTELKYKNPHALRHSFATHMLNNGADLKSVSEMLGHANLTTTEIYTHV 314 Query: 302 NSKNGGDWMMEIYDQTHP 319 + E+YD+ HP Sbjct: 315 TF----GRVREVYDKAHP 328 >gi|257867648|ref|ZP_05647301.1| phage integrase [Enterococcus casseliflavus EC30] gi|257873977|ref|ZP_05653630.1| phage integrase [Enterococcus casseliflavus EC10] gi|257801731|gb|EEV30634.1| phage integrase [Enterococcus casseliflavus EC30] gi|257808141|gb|EEV36963.1| phage integrase [Enterococcus casseliflavus EC10] Length = 296 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 102/305 (33%), Positives = 160/305 (52%), Gaps = 22/305 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L L IERGLS+ T SY+ D +Q+L FL +K + +Q+ + +F+ + Sbjct: 7 DYLHYLTIERGLSQNTRASYQRDLQQYLAFL-----QKKQVTQWQQIDRVIVLSFLQSLQ 61 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 ++ R +S ++ F +YL++ ++T + ++ + KK LP L+ ++ L++ Sbjct: 62 DAGKSSATVIRMVSSLRRFHQYLRQERLTDHDPMQHIDSPKKQQKLPDTLSLQEVERLIE 121 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 T + R+ AIL ++Y GLR+SE + L ++ L+ GKGDK RI Sbjct: 122 -----TPDTRAVLGIRDRAILEVMYATGLRVSELIGLKLNDLHLSMGLLQTTGKGDKERI 176 Query: 200 VPLLPSVRKAILEYY-DLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYL 254 VPL + I Y D P+ L + P LF G L+ + ++ L R Sbjct: 177 VPLGDLAIQWIETYLSDARPY---LTRKTPDESHLFVNNHGTQLSRQGIWKNLKALVRQA 233 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ + T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT++ K M E+Y Sbjct: 234 GITKNVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR----MTEVY 289 Query: 315 DQTHP 319 Q P Sbjct: 290 KQHFP 294 >gi|254360931|ref|ZP_04977077.1| site-specific recombinase XerD [Mannheimia haemolytica PHL213] gi|261493842|ref|ZP_05990354.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495108|ref|ZP_05991572.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2 str. OVINE] gi|153092410|gb|EDN73473.1| site-specific recombinase XerD [Mannheimia haemolytica PHL213] gi|261309178|gb|EEY10417.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310444|gb|EEY11635.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 297 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 100/303 (33%), Positives = 155/303 (51%), Gaps = 18/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L E GLS+ T+ SY D +F +++E K + L + +++ F+ +R Sbjct: 9 EQFLDTLWQEHGLSENTVASYRSDLERFS---DYFSEPKAFLS----LDHIDLQGFLGER 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q S R LS ++ F ++L + L + + K+ SLP++L+E Q + L+ Sbjct: 62 LEQGYKATSSARMLSCLRKFFRFLCLEHYRQDDPTLTLSSPKRGASLPKSLSEDQVMDLL 121 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + I+ R+ A+L LLY GLR++E +SL+ NI Q +RI GKGDK R Sbjct: 122 D-----APNTLDPIELRDKAMLELLYATGLRVTELVSLSMDNISLKQGVVRIIGKGDKER 176 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL I E++ P LN +F RG+ + F I+ G+ Sbjct: 177 LVPLGEEANYWIQEFFQYGRPILLNNQQSDVVFPSRRGQQMTRQTFWHRIKHYAVLAGID 236 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHL+++G DLR +Q +LGH LSTTQIYT V + ++ Q Sbjct: 237 ADKLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTQVAKAR----LKSLHQQ 292 Query: 317 THP 319 HP Sbjct: 293 FHP 295 >gi|320096216|ref|ZP_08027802.1| integrase/recombinase XerD [Actinomyces sp. oral taxon 178 str. F0338] gi|319976842|gb|EFW08599.1| integrase/recombinase XerD [Actinomyces sp. oral taxon 178 str. F0338] Length = 299 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 89/301 (29%), Positives = 148/301 (49%), Gaps = 10/301 (3%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 W +L RG S T+++Y D FLAF + L+ RA+++ Sbjct: 7 DQWGAHLRHSRGASAHTVRAYTAD---LAAFLAFTGTDPADPGAASALTLRAARAWLADS 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + ++ R ++ +++F + + + + + + LPR +++ +A L+ Sbjct: 64 VARGAARSTVSRHVAALRNFSAWAHREGLAPTDAAAALASARADQRLPRVVDQDEAAALL 123 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + S + + R+ AIL L+Y G+R+SEA SLT +I T+R+ GKGDK R Sbjct: 124 ECARSRASADDP-VSVRDWAILELIYATGIRVSEACSLTTSSIDPAALTVRVLGKGDKER 182 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VP R A+ ++ L + LF G +G P++P V + I ++ G+ Sbjct: 183 TVPFGVPARDALDQWTVRARPSLAVGTDA-LFVGAKGGPIDPRVVRAMIHRMCARAGV-R 240 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 H LRHS ATHLL G DLR++Q ILGH L+TTQ YT+V++ + ++Y + H Sbjct: 241 DIAPHGLRHSAATHLLQGGADLRAVQEILGHSSLATTQRYTHVDAGR----LSDVYRRAH 296 Query: 319 P 319 P Sbjct: 297 P 297 >gi|258405018|ref|YP_003197760.1| integrase family protein [Desulfohalobium retbaense DSM 5692] gi|257797245|gb|ACV68182.1| integrase family protein [Desulfohalobium retbaense DSM 5692] Length = 306 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 114/328 (34%), Positives = 171/328 (52%), Gaps = 26/328 (7%) Query: 2 EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61 E + LPE V + +L L+ +RG S T+++Y D QF L + + Sbjct: 3 EQSRLPETV--------ETFLAYLDGQRGASPATVRAYRRDLEQFEAVL---RRRGLDMD 51 Query: 62 TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121 +Q+ ++ F + Q + S+ R LS ++ F ++ +R+ + ++ N K+ Sbjct: 52 RPQQIDREAVQGFAADLHRQGLRRSSVSRKLSAVRRFFRFCLQRQWVDTNPAHSVANPKQ 111 Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 P+ L +QAL L+D H ++ K R+ A+ LLYG GLRISEAL L +I Sbjct: 112 EVRHPKVLTVEQALELMDT---HLPNDPKGC--RDLALAELLYGSGLRISEALQLDIDDI 166 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNP 240 + +R+ GKG K R+ PL + + Y + ++ Q P LF G+RGK L Sbjct: 167 EPGRGVVRVVGKGGKERLAPLTEPGQSRLRRYLEQR-RAFVVDPQEPALFLGLRGKRLQR 225 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 R + +L + GLP + H LRHSFATHLL +G DLRS+Q +LGH RLSTTQ YT+ Sbjct: 226 REANRILARLSQTAGLPEEISPHVLRHSFATHLLRSGADLRSVQELLGHSRLSTTQRYTH 285 Query: 301 VNSKNGGDWMMEIYDQTHPSITQKDKKN 328 ++ D +M+ YDQ HP K KKN Sbjct: 286 LSL----DGIMQTYDQAHP----KAKKN 305 >gi|227541999|ref|ZP_03972048.1| site-specific tyrosine recombinase XerD [Corynebacterium glucuronolyticum ATCC 51866] gi|227182214|gb|EEI63186.1| site-specific tyrosine recombinase XerD [Corynebacterium glucuronolyticum ATCC 51866] Length = 360 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 97/308 (31%), Positives = 152/308 (49%), Gaps = 21/308 (6%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 K + W+ L +ERG ++ T+ SY D +L F+ +++ ++ T+I AF+ Sbjct: 68 KVARQWITYLTVERGKARNTIASYRRDLASYLDFVGE--------RSLDSIAATDIEAFL 119 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 + S++R LS I+ F + + I + ++ LP L+ + Sbjct: 120 QSLGRHGLAVTSVRRMLSTIRGFHAFARDEGIVADDVAHDITPPAMPQHLPDTLSVDEI- 178 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQG 192 N L+ + + RN A+L LLYG G RISE LSL +I + T L + G Sbjct: 179 ----NTLIESQAGDSAVALRNKALLELLYGTGARISEVLSLAVDDITALEETDGILVLTG 234 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLR 251 KGDK RIVP+ R+A+ Y LN LF +RG K ++ + ++Q Sbjct: 235 KGDKQRIVPVGSHARQAVDAYLVRGRPQLNKGKSAALFLNVRGGKAMSRQSAWQVVKQAA 294 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 G+ + HTLRHSFATHLL G D+RS+Q +LGH ++TTQIYT++ + D + Sbjct: 295 TEAGITKDISPHTLRHSFATHLLEGGADVRSVQELLGHASVTTTQIYTHITA----DSLR 350 Query: 312 EIYDQTHP 319 ++ HP Sbjct: 351 AMWRTAHP 358 >gi|152981264|ref|YP_001354893.1| site specific integrase/recombinase protein [Janthinobacterium sp. Marseille] gi|151281341|gb|ABR89751.1| site specific integrase/recombinase protein [Janthinobacterium sp. Marseille] Length = 319 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 97/316 (30%), Positives = 163/316 (51%), Gaps = 21/316 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +L NL +R L+ LT SY D + L F A ++ K T+ + ++ +IR F ++ Sbjct: 12 GYLDNLISQRQLAPLTTVSYRRDLLELLAF-ATASDSKATLTGV---THFQIRKFAAQLH 67 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q + RS+ R LS + F +L ++ T + + ++ K+S LP+AL A+ LV Sbjct: 68 AQGLNARSIARKLSAWRGFFTWLSEQNAITSNPVDGIKAPKRSKPLPKALAADDAVRLVA 127 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL----------TPQNIMD-DQSTL 188 S ++ + N A+ LLY GLR+SE + L T +D D + Sbjct: 128 EHAPGKSADSA-MQLCNHAMFELLYSSGLRVSELVGLDVRYAQEARYTSAGWIDFDAHEV 186 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 + GKG+K+R VP+ + A+ + + + L+ PLF RG ++ V Q ++ Sbjct: 187 MVTGKGNKMRTVPIGQAAMDALKAWLAVRDTLVKLDPH-PLFLSERGTRVSARVVQLRLK 245 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 + +GLP H LRHSFA+H+L + GDLR++Q +LGH ++ TQIYT+++ + Sbjct: 246 AHGQAIGLPTDVHPHVLRHSFASHVLQSSGDLRAVQEMLGHASIAATQIYTSLDFQR--- 302 Query: 309 WMMEIYDQTHPSITQK 324 + ++YD HP +K Sbjct: 303 -LAQVYDAAHPRAKKK 317 >gi|229163028|ref|ZP_04290984.1| Tyrosine recombinase xerD [Bacillus cereus R309803] gi|228620434|gb|EEK77304.1| Tyrosine recombinase xerD [Bacillus cereus R309803] Length = 296 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 95/304 (31%), Positives = 161/304 (52%), Gaps = 18/304 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++++ + +E+GL+K T+ SYE D + ++ +L + K T +++ I F+ Sbjct: 6 KDFIHYMVVEKGLAKNTVVSYERDLKSYVKYLQNVEQTK----TFHEVTRLHIVNFLQHL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + ++L R ++ I+SF ++L + + +++ + LP+ L+ V Sbjct: 62 KENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLS-------V 114 Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 D V LL T T R+ A+L LLY GLR+SE ++L +++ +R GKG+K Sbjct: 115 DEVEALLQTPKMTSAFGVRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNK 174 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RI+PL +AI +Y + +L + LF G L+ F + +++L + Sbjct: 175 ERIIPLGSLATEAIQKYIEKGRRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEAN 234 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V+ + ++Y Sbjct: 235 IEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKDVYK 290 Query: 316 QTHP 319 Q HP Sbjct: 291 QFHP 294 >gi|110598394|ref|ZP_01386667.1| Tyrosine recombinase XerD [Chlorobium ferrooxidans DSM 13031] gi|110340003|gb|EAT58505.1| Tyrosine recombinase XerD [Chlorobium ferrooxidans DSM 13031] Length = 304 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 98/302 (32%), Positives = 162/302 (53%), Gaps = 13/302 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L + IER S+ T SY D ++L+F+ + I++++I + +IR FI++ Sbjct: 13 ESFLNYMLIERNFSENTRVSYRNDLERYLLFMQ---QNAISLESI---TPNQIREFITEL 66 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + SL R++S I+S K+L + T+ + N+ K++ LP L + L L+ Sbjct: 67 YLTGLEASSLARNISAIRSLHKFLLSERTTSINPAENLHQPKQARYLPTVLTIDETLRLL 126 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + LL ++ R+ I+ LLY G+R+SE +S+ QN+ + +RI GKG K R Sbjct: 127 EAPLLQNPQSKYFL--RDKTIVELLYATGVRVSELISIQQQNLYLEAGFVRIFGKGSKER 184 Query: 199 IVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ + + I Y L+ N LF RGKPL+ +RQ G+ Sbjct: 185 LVPVGSAATEWITRYQRELRQGLSGRNSGDYLFLNARGKPLSRMAIFSMVRQYAIIAGIE 244 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + HT RH+FATHLL G DLR++Q +LGH +STTQIYT+++ ++ E++ Sbjct: 245 KQISPHTFRHTFATHLLEGGADLRAVQEMLGHSSISTTQIYTHIDR----SFVKEVHKTF 300 Query: 318 HP 319 HP Sbjct: 301 HP 302 >gi|332312396|gb|EGJ25491.1| Tyrosine recombinase xerD [Listeria monocytogenes str. Scott A] Length = 302 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 96/309 (31%), Positives = 162/309 (52%), Gaps = 27/309 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L L +ERGLS T+++YE D R F+ Y + + L ++I F++ Sbjct: 11 EDFLHFLIVERGLSANTIKAYERDLRYFVS----YMDVAKGLTDPNTLERSDIVGFMAFA 66 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + RS+ R ++ ++SF YL + ++ + K++ LP+ LN + Sbjct: 67 RQEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLN-------L 119 Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 D+V LL +S + + R+ A++ +LY GLR++E +SL ++ ++ GKGDK Sbjct: 120 DDVEKLLSSSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDK 179 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI------RGKPLNPGVFQRYIRQL 250 RI+PL + + +Y + + ++ P +R G+ L F + ++ + Sbjct: 180 ERIIPLGKTATTVLEKYLE----EARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGI 235 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 + G+ T HTLRHSFATHLL NG DLRS+Q +LGH +STTQIYT+V + Sbjct: 236 AKESGIEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLR----L 291 Query: 311 MEIYDQTHP 319 ++Y Q HP Sbjct: 292 KDVYKQFHP 300 >gi|78187478|ref|YP_375521.1| phage/XerD family site-specific recombinase [Chlorobium luteolum DSM 273] gi|78167380|gb|ABB24478.1| site-specific recombinase, phage/XerD family [Chlorobium luteolum DSM 273] Length = 341 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 108/335 (32%), Positives = 174/335 (51%), Gaps = 37/335 (11%) Query: 7 PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT---EEKITIQTI 63 P +S L++E +L + ++ LS T+ +Y D RQF FLA ++ E +++ T Sbjct: 20 PATLSERLIEE---FLLSGRGQKNLSGTTIVAYRTDLRQFFGFLARHSGSGEFDLSLVTP 76 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 + +R F+ + + RS+ R L+ +KSF ++L + + TES + + + S Sbjct: 77 -----SLVRMFMGDLLRRGLQQRSIARKLASLKSFFRFLHESRHLTESALSAVSMPRYSR 131 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDAR----------NSAILYLLYGCGLRISEA 173 +P L E +A L ++V+ H + R ++AIL +LYGCGLRISE Sbjct: 132 PIPSFLTEPEASMLFEDVVPMAPHREGFAHGRELQRNFTLLRDAAILEMLYGCGLRISEL 191 Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD--LCPFDLNLNIQLP--- 228 L ++ +++ GKG K RIVPL A+ +Y++ L F ++++ L Sbjct: 192 TGLRQSDLEMVGGFVKLTGKGRKQRIVPLGAPAVSALKKYFEVRLNFFRISVDGALGESD 251 Query: 229 -LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS---TTAHTLRHSFATHLLSNGGDLRSIQ 284 +F +GK + P + QR R RYL HTLRH+FATHLL+ G DL+S+ Sbjct: 252 FVFLTNKGKQIYPMLVQRMTR---RYLAAVTEQKKKNPHTLRHTFATHLLNGGADLQSVS 308 Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 +LGH LSTT+IYT+V + + E+Y + HP Sbjct: 309 EMLGHSNLSTTEIYTHVTF----ERLREVYRKAHP 339 >gi|257063600|ref|YP_003143272.1| tyrosine recombinase XerD [Slackia heliotrinireducens DSM 20476] gi|256791253|gb|ACV21923.1| tyrosine recombinase XerD [Slackia heliotrinireducens DSM 20476] Length = 309 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 102/313 (32%), Positives = 157/313 (50%), Gaps = 27/313 (8%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 L +R ++L L +ERG S LT+ SY D ++ FL + + ++ ++ A Sbjct: 11 FLPDRNDYLAYLSVERGSSSLTVGSYATDLNDYISFLG-----ERGVPDSAAITRDDVVA 65 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK-SNSLPRALNEK 132 + R + D S++R LS +K F ++L +T + N ++ +L K + LP L+ Sbjct: 66 YEYDLRRRGYADSSIERHLSALKGFHRFLVGEGVT-KGNPADLVSLPKVPDRLPDVLSVS 124 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + N LL + + R+ A L LLYGCGLR SE +SL ++ + LR+ G Sbjct: 125 EV-----NELLDQPFKDGPLGLRDQAALELLYGCGLRASELISLDLGDVFFAEGILRVMG 179 Query: 193 KGDKIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 KG + RIVP+ S ++ +L+Y + P + + L RG L+ Sbjct: 180 KGSRERIVPIGGSAQRVLLDYLENGRPKLAKPSKTDGAVIL----NARGGRLSRQALHTI 235 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 +R +G P HTLRHSFATH+L G DLR+IQ ILGH +STTQIY +V+ + Sbjct: 236 VRTAGATIGRP-DLHPHTLRHSFATHMLEGGADLRTIQEILGHSDISTTQIYVHVDRSH- 293 Query: 307 GDWMMEIYDQTHP 319 + E Y HP Sbjct: 294 ---IREEYLAAHP 303 >gi|311739368|ref|ZP_07713203.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC 33035] gi|311305184|gb|EFQ81252.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC 33035] Length = 296 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 95/301 (31%), Positives = 152/301 (50%), Gaps = 15/301 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q WL +L +ERG+S TL +Y D R++L +L ++ +R ++ + A++ Sbjct: 9 QTWLNHLAVERGVSANTLSNYRRDVRRYLSWLG-----DNGVEDLRSVTRPMVEAYLKDL 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R+ + S R+L + K+ + + + LP L+ + L+ Sbjct: 64 RSH-MAVSSANRALIVARGLHKFAVSEGVVDVDVAVEVTPPSTGQQLPETLSVDEVTALI 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + T ET +D R+ A+L +LYG G RISE +SL ++ Q +R++GKGDK R Sbjct: 123 EA----TPTETP-VDVRDRALLEMLYGTGARISEIVSLNVDDVSSAQEVIRLRGKGDKER 177 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 IVP+ R+A+ Y L+ LF RG L+ ++ + L Sbjct: 178 IVPVGSHARQALDAYLVRARPALSKGKTPALFLNTRGGALSRQSAWTVLKTAAQRAQLGK 237 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 S + HTLRHSFATHLL G D+R++Q +LGH ++TTQIYT+V + D + E++ H Sbjct: 238 SISPHTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTA----DSLREVWRTAH 293 Query: 319 P 319 P Sbjct: 294 P 294 >gi|229545742|ref|ZP_04434467.1| site-specific recombinase XerD [Enterococcus faecalis TX1322] gi|229309192|gb|EEN75179.1| site-specific recombinase XerD [Enterococcus faecalis TX1322] Length = 299 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 100/322 (31%), Positives = 162/322 (50%), Gaps = 28/322 (8%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 ME N PE+ + L+ +ERG S+ T ++Y+ D + F +FL T Sbjct: 1 MEEKNWPELFARYLI-----------VERGYSEKTKKAYQEDIQHFFLFLK--TSGNDNY 47 Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 T+ L ++RA++S+ Q+ S+ R ++ ++SF ++L K + E+ + K Sbjct: 48 LTVEHL---DVRAYLSELYDQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKK 104 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 K LPR EK+ + L ++ + +D RN A+L +LYG G+R+SE +LT Sbjct: 105 KQLRLPRFFYEKEM-----DALFESAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVDA 159 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKP 237 + S L + GKG+K R VP + A+ +Y + L Q +F G+ Sbjct: 160 VDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGEQ 219 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + P + + QL + L H LRH+FATHLL+NG D+R++Q +LGH LSTTQI Sbjct: 220 ITPTGIEYVLNQLIKKSSLNAEIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQI 279 Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319 Y +V ++ + + Y HP Sbjct: 280 YAHVTKES----LQKNYRTFHP 297 >gi|148266023|ref|YP_001232729.1| tyrosine recombinase XerC [Geobacter uraniireducens Rf4] gi|146399523|gb|ABQ28156.1| tyrosine recombinase XerD subunit [Geobacter uraniireducens Rf4] Length = 294 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 100/303 (33%), Positives = 153/303 (50%), Gaps = 20/303 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK- 77 + + + L ER +S TL +Y D QFL AF E+ + +++ IR ++++ Sbjct: 6 EQFCRYLSTERNVSPHTLGAYRSDLEQFL---AFIDREQRPGADVNSVTHLLIRRYMAQL 62 Query: 78 -RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + QK S+ R L+ I++F +YL + + ++ + K +P LN + Sbjct: 63 HKDHQK---SSIGRKLAAIRAFFRYLLREGLAAKNPAELVSTPKMEKKVPFHLNIDEVTA 119 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 LV+ + RN AIL LY CG+R+SE L ++ D+ R+ GKG+K Sbjct: 120 LVE-----APQSADSLSLRNRAILETLYSCGIRVSELTGLNVGDVDMDERLARVLGKGNK 174 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 RIVP+ R A+ Y L + N ++ PL RG L R I + + Sbjct: 175 ERIVPVGTYARNALAAY--LASRN-NPSMDAPLILNARGGRLTSRSVARIIDKYIIKIAA 231 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + HTLRH+FATH+L G DLR+IQ +LGH LSTTQ YT+V+ D +ME+YD+ Sbjct: 232 MKKVSPHTLRHTFATHMLEGGADLRAIQELLGHSSLSTTQKYTHVSI----DRLMEVYDK 287 Query: 317 THP 319 HP Sbjct: 288 AHP 290 >gi|167041136|gb|ABZ05896.1| putative Phage integrase family protein [uncultured marine microorganism HF4000_001A02] Length = 298 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 91/304 (29%), Positives = 163/304 (53%), Gaps = 17/304 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q+++ L++ER L++ +L+SYE D +Q+ +L + ++ ++TIR ++ IR+F+ K Sbjct: 6 QDYMTMLKVERNLARNSLESYERDLQQYHQYL----KTELKLKTIRNVTLGHIRSFVRKL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + S+KR++S I+++ +L + N L + +PR L + + Sbjct: 62 SNRGLAANSIKRAVSSIRTYHNFLSAEGHMKD----NPAQLLDTPKIPRKLPNVLTIQEI 117 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D +L E + R+ AI ++Y CGLR++E +I+ D +R+QGKG K R Sbjct: 118 DKIL-GIIPENAPMAQRDLAIFEMMYSCGLRVTELCDFKTSDILWDSEMIRVQGKGSKQR 176 Query: 199 IVPLLPSVRKAILEYYDL---CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 VP+ P R+ + Y + D N N+ +F G+ L + +++ Sbjct: 177 FVPIGPIARENLKNYLNHERNTLADKNPNVA-EVFLSRNGRKLTRMMIWVLLKKWTESAE 235 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + HTLRHSFATHLL G DLRS+Q +LGH ++TTQ+YT+++ ++ + E++ Sbjct: 236 VKKEVSPHTLRHSFATHLLEGGADLRSVQEMLGHTDITTTQVYTHLDKEH----LKEVHR 291 Query: 316 QTHP 319 HP Sbjct: 292 TYHP 295 >gi|260556505|ref|ZP_05828723.1| tyrosine recombinase XerC [Acinetobacter baumannii ATCC 19606] gi|260409764|gb|EEX03064.1| tyrosine recombinase XerC [Acinetobacter baumannii ATCC 19606] Length = 308 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 102/311 (32%), Positives = 173/311 (55%), Gaps = 26/311 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL+ +I+ S+ T+ +YE D + FL F +K+ + R + +++R ++++R Sbjct: 15 WLKERKIQNQ-SEHTITAYERDVKSFLEFCEL---KKVDL---RNVEASDLREYLAQRVE 67 Query: 81 Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q ++ S++R L+ I+ F+K+ ++ K E N + LK+ PR L + V+ Sbjct: 68 QDQLSSSSMQRHLTSIRQFMKWAEQGKYL-EINPTDDFKLKRQ---PRPLPGMIDIETVN 123 Query: 140 NVLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 +L E K ID R+ A+L LLY GLR++E LT ++I ++ +RI GKG+ Sbjct: 124 QILDQPMPE-KPIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGN 182 Query: 196 KIRIVPLLPSVRKAILEY---YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 K RIVP ++++L + Y++ + N P+F RG L P ++ ++ + Sbjct: 183 KTRIVPFGKKAKESLLNWLKIYNIWKGHFDQNA--PVFISQRGGALTPRQIEKRVKLQAQ 240 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 G+ + H LRH FA+H+LS+ GDLRS+Q +LGH LSTTQIYT+++ D + + Sbjct: 241 RAGVNVDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDF----DHLAQ 296 Query: 313 IYDQTHPSITQ 323 +YDQ HP T+ Sbjct: 297 VYDQAHPRATK 307 >gi|227489005|ref|ZP_03919321.1| site-specific tyrosine recombinase XerD [Corynebacterium glucuronolyticum ATCC 51867] gi|227091081|gb|EEI26393.1| site-specific tyrosine recombinase XerD [Corynebacterium glucuronolyticum ATCC 51867] Length = 360 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 97/308 (31%), Positives = 155/308 (50%), Gaps = 21/308 (6%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 K + W+ L +ERG ++ T+ SY D +L F+ +++ ++ T+I AF+ Sbjct: 68 KVARQWITYLTVERGKARNTIASYRRDLASYLDFVGE--------RSLDSIAATDIEAFL 119 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 + S++R LS I+ F + + I + ++ LP L+ + Sbjct: 120 QSLGRHGLAVTSVRRMLSTIRGFHAFARDEGIVADDVAHDITPPAMPQHLPDTLSVDEIN 179 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQG 192 TL+++ ++ + RN A+L LLYG G RISE LSL +I + T L + G Sbjct: 180 TLIESQAGDSA-----VALRNKALLELLYGTGARISEVLSLAVDDITALEETDGILVLTG 234 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLR 251 KGDK RIVP+ R+A+ Y LN LF +RG K ++ + ++Q Sbjct: 235 KGDKQRIVPVGSHARQAVDAYLVRGRPQLNKGKSAALFLNVRGGKAMSRQSAWQVVKQAA 294 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 G+ + HTLRHSFATHLL G D+RS+Q +LGH ++TTQIYT++ + D + Sbjct: 295 TEAGITKDISPHTLRHSFATHLLEGGADVRSVQELLGHASVTTTQIYTHITA----DSLR 350 Query: 312 EIYDQTHP 319 ++ HP Sbjct: 351 AMWRTAHP 358 >gi|152976499|ref|YP_001376016.1| site-specific tyrosine recombinase XerD [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025251|gb|ABS23021.1| tyrosine recombinase XerD [Bacillus cytotoxicus NVH 391-98] Length = 296 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 93/303 (30%), Positives = 162/303 (53%), Gaps = 16/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISK 77 ++++ + +E+GL+K T+ SYE D + ++ +L +K+ ++T +++ +I F+ Sbjct: 6 KDFIHYMVVEKGLAKNTVVSYERDLKSYVKYL-----QKVEQMKTFHEVTRMQIVNFLQH 60 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 R ++L R ++ I+SF ++L + + +++ + LP+ L+ + Sbjct: 61 LRENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVSEV--- 117 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 LL T T R+ A+L LLY GLR+SE ++L +++ +R GKG+K Sbjct: 118 --EALLQTPKTTSAYGIRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCVGKGNKE 175 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 RI+PL +AI Y + +L + LF G L+ F + +++L + + Sbjct: 176 RIIPLGSLATEAIQRYIEKGRKELMGKKAVDALFLNHHGNRLSRQGFWKILKRLAKEANI 235 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V+ + ++Y Q Sbjct: 236 EKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKDVYKQ 291 Query: 317 THP 319 HP Sbjct: 292 FHP 294 >gi|218778680|ref|YP_002429998.1| tyrosine recombinase XerD [Desulfatibacillum alkenivorans AK-01] gi|218760064|gb|ACL02530.1| tyrosine recombinase XerD [Desulfatibacillum alkenivorans AK-01] Length = 298 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 100/303 (33%), Positives = 157/303 (51%), Gaps = 19/303 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++ L +E+GLS+ TL++Y D F FL +K I + + +I + R Sbjct: 10 QYMNYLLVEKGLSQNTLEAYGKDLGVFTDFL-----QKRKIDDLTKADTPDIVQHLIDLR 64 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLV 138 Q +G R+ R L I+ +L++ KI N K LP+ L+ +++V Sbjct: 65 AQGLGARTRARHLVAIRGLFSFLEQEKIIKH-------NPAKLVDLPKTGLHLPDVISVV 117 Query: 139 D-NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 + LL +E + AR+ A++ L Y GLR+SE +++ Q+I D +R+ GKG K Sbjct: 118 EIEQLLEAPNEMDILGARDRAMMELAYASGLRVSELINVRVQDIHLDAGFVRVMGKGSKE 177 Query: 198 RIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 RIVP+ R+ I Y D P L LF G+P+ F + +++ G+ Sbjct: 178 RIVPMGRQAREKIKTYMDHDRPILLKGKPGEYLFVVRGGRPMTRQAFWKLLKKYALKAGI 237 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + T HTLRHSFA+HLL G DLR +Q +LGH +STTQIYT+V + ++EI+++ Sbjct: 238 AKNITPHTLRHSFASHLLEGGADLRVVQEMLGHVDISTTQIYTHVARER----LIEIHER 293 Query: 317 THP 319 HP Sbjct: 294 YHP 296 >gi|89091996|ref|ZP_01164951.1| tyrosine recombinase XerD [Oceanospirillum sp. MED92] gi|89083731|gb|EAR62948.1| tyrosine recombinase XerD [Oceanospirillum sp. MED92] Length = 306 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 95/300 (31%), Positives = 161/300 (53%), Gaps = 16/300 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L + +E+GLS TL SY D QF ++L T++ + + ++ +I+ +++ R Sbjct: 20 YLDAIWMEKGLSDNTLSSYRRDLVQFSVWL---TDQGVIM---KRCCRVDIQKYLAWRVK 73 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 ++ S R LS ++ F +YL + ++ +E +L + + KK LP+ L E + L+D Sbjct: 74 ERRKASSTSRMLSCLRGFYRYLLREEMISEDPLLLIDSPKKGRPLPKTLTESEVELLLDA 133 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 L + R+ A+L +LY GLR+SE ++L I +Q LR+ GKG K R+V Sbjct: 134 PDLSDP-----VQYRDRAMLEVLYATGLRVSELVALRLHEINLNQGVLRVMGKGGKERLV 188 Query: 201 PLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 PL ++ Y ++ P ++ LF RG+ + F I++ G+ + Sbjct: 189 PLGEEAIHWVMRYMGEVRPALFTHDVSDVLFPSRRGQQMTRQTFWHRIKRHALTAGIDKT 248 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + + ++ + HP Sbjct: 249 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQQR----LQSLHQEHHP 304 >gi|332521441|ref|ZP_08397895.1| integrase family protein [Lacinutrix algicola 5H-3-7-4] gi|332042840|gb|EGI79039.1| integrase family protein [Lacinutrix algicola 5H-3-7-4] Length = 298 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 99/292 (33%), Positives = 153/292 (52%), Gaps = 20/292 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L+IERGLS ++ +Y D ++ + L EE + + + I+ FI ++ I Sbjct: 14 LKIERGLSNNSIDNYSFDVKKLIKHL----EENNIVSSPVNIQKQTIQEFIYAI-SKTIN 68 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 RS R +SG+K F YL ++ + + K LP L+E++ L+ V L Sbjct: 69 SRSQSRLISGLKGFFNYLVFEDYRFDNPLDTIDAPKIGRKLPDTLSEQEINNLISAVDLS 128 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 T RN IL LLYGCGLR+SE L ++ D+ +++ GKGDK R VP++P Sbjct: 129 TPQ-----GERNRCILELLYGCGLRVSELTHLKISDLFFDEGYIKVTGKGDKQRFVPIVP 183 Query: 205 SVRKAILEYYDLCPFDLNLNIQLP------LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 + +K I Y + ++ ++ +P LF RGK L + ++ L + L Sbjct: 184 ATQKFINIYRN----EVRNHMVIPSEYKDTLFLNRRGKQLTRAMIFTIVKSLAIKINLGK 239 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 + + HT RHSFATHLL NG DLR+IQ +LGH ++TT+IY +V+ + D M Sbjct: 240 TISPHTFRHSFATHLLENGADLRAIQLMLGHESITTTEIYMHVDKSHLKDVM 291 >gi|196034794|ref|ZP_03102201.1| integrase/recombinase XerD [Bacillus cereus W] gi|195992333|gb|EDX56294.1| integrase/recombinase XerD [Bacillus cereus W] Length = 296 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 94/304 (30%), Positives = 161/304 (52%), Gaps = 18/304 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++++ + +E+GL+K T+ SYE D + ++ +L + K + +++ I F+ Sbjct: 6 KDFIHYMVVEKGLAKNTVVSYERDLKSYVKYLQKVEQAK----SFHEVTRLHIVNFLQHL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + ++L R ++ I+SF ++L + + +++ + LP+ L+ V Sbjct: 62 KENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLS-------V 114 Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 D V LL T T R+ A+L LLY GLR+SE ++L +++ +R GKG+K Sbjct: 115 DEVEALLQTPKMTSVFGVRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCVGKGNK 174 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RI+PL +AI +Y + +L + LF G L+ F + +++L + Sbjct: 175 ERIIPLGSLATEAIQKYIEKGRRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEAN 234 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V+ + ++Y Sbjct: 235 IEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKDVYK 290 Query: 316 QTHP 319 Q HP Sbjct: 291 QFHP 294 >gi|23099302|ref|NP_692768.1| integrase:recombinase [Oceanobacillus iheyensis HTE831] gi|34222800|sp|Q7ZAM3|XERD_OCEIH RecName: Full=Tyrosine recombinase xerD gi|22777531|dbj|BAC13803.1| integrase : recombinase [Oceanobacillus iheyensis HTE831] Length = 297 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 103/303 (33%), Positives = 157/303 (51%), Gaps = 16/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++ L IERGLS TL SY+ D +L Y ++ T ++S T+I F+ Sbjct: 7 EDFFHFLRIERGLSDNTLSSYKRDLTNYLQ----YMKDHDKTATWDKISRTDIMGFLYML 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + Q ++ R +S I+SF ++L + +IT+ L++ KK LP L++ + Sbjct: 63 KDQGKSTATISRHISSIRSFHQFLIREQITSNDPSLHIETPKKDRKLPDILSQDEV---- 118 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + LL TK + RN A+L LLY GLR+SE +SL ++ ++ GKG K R Sbjct: 119 -DRLLEIKMNTK-LSVRNKAMLELLYATGLRVSELISLNVSDLHLMMGFVQCFGKGSKER 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 IVPL + + + +Y L N + LF G+ L F + ++ L G+ Sbjct: 177 IVPLGDTAKHYLEKYISEARDSLIKKNNREDALFVNQHGRRLTRQGFWKILKGLTLEAGI 236 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + T HTLRHSFATHLL NG DLR +Q +LGH +STTQ+YT+V + ++Y Sbjct: 237 LKTITPHTLRHSFATHLLENGADLRLVQEMLGHADISTTQVYTHVTKAR----LKDMYQS 292 Query: 317 THP 319 HP Sbjct: 293 YHP 295 >gi|57234018|ref|YP_181928.1| tyrosine recombinase XerD [Dehalococcoides ethenogenes 195] gi|57224466|gb|AAW39523.1| tyrosine recombinase XerD [Dehalococcoides ethenogenes 195] Length = 302 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 93/302 (30%), Positives = 155/302 (51%), Gaps = 9/302 (2%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q++L L +E+G S+ T ++YE D RQ + F + I + + A++ Sbjct: 6 QSFLNYLMVEKGFSENTTEAYENDLRQMMTFADKEAAKSGKIPGWENFTRQTMLAYMLDL 65 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + ++ R ++ KSF ++ E+ N+ K LP A++ Q L+ Sbjct: 66 KERNYAITTVVRKMAAAKSFFNFMVAEGKLKENPTENISTPKVGKPLPDAISISQVRALL 125 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + + S E K R+ A+L LLY G+R++E ++L ++ + +R GKG K R Sbjct: 126 NQPVKSGSSEAK----RDKAMLELLYASGMRVTELVNLNVLDVDLKEGFVRCFGKGRKER 181 Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 ++P+ P ++I EY ++ P + + LF RG L + ++ R GL Sbjct: 182 MIPIYPQAAQSIQEYLTEIRPNLVRAETEKALFLNRRGDRLTRQGLWQILKGYAREAGLD 241 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T HTLRHSFATH+LS G DLRS+Q +LGH +STTQIYT++ S++ + Y++ Sbjct: 242 DVVTPHTLRHSFATHMLSGGADLRSVQELLGHANISTTQIYTHLTSEH----IKRSYEKA 297 Query: 318 HP 319 HP Sbjct: 298 HP 299 >gi|217963893|ref|YP_002349571.1| tyrosine recombinase XerD [Listeria monocytogenes HCC23] gi|290892115|ref|ZP_06555111.1| integrase/recombinase XerD [Listeria monocytogenes FSL J2-071] gi|217333163|gb|ACK38957.1| tyrosine recombinase XerD [Listeria monocytogenes HCC23] gi|290558238|gb|EFD91756.1| integrase/recombinase XerD [Listeria monocytogenes FSL J2-071] gi|307571537|emb|CAR84716.1| integrase/recombinase [Listeria monocytogenes L99] Length = 297 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 96/309 (31%), Positives = 162/309 (52%), Gaps = 27/309 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L L +ERGLS T+++YE D R F+ Y + + L ++I F++ Sbjct: 6 EDFLHFLIVERGLSANTIKAYERDLRYFVS----YMDVAKGLTDPNTLERSDIVGFMAFA 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + RS+ R ++ ++SF YL + ++ + K++ LP+ LN + Sbjct: 62 RQEGKSPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLN-------L 114 Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 D+V LL +S + + R+ A++ +LY GLR++E +SL ++ ++ GKGDK Sbjct: 115 DDVEKLLSSSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDK 174 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI------RGKPLNPGVFQRYIRQL 250 RI+PL + + +Y + + ++ P +R G+ L F + ++ + Sbjct: 175 ERIIPLGKTATTVLEKYLE----EARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGI 230 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 + G+ T HTLRHSFATHLL NG DLRS+Q +LGH +STTQIYT+V + Sbjct: 231 AKESGIEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLR----L 286 Query: 311 MEIYDQTHP 319 ++Y Q HP Sbjct: 287 KDVYKQFHP 295 >gi|30264167|ref|NP_846544.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str. Ames] gi|47778274|ref|YP_020956.2| site-specific tyrosine recombinase XerD [Bacillus anthracis str. 'Ames Ancestor'] gi|49186997|ref|YP_030249.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str. Sterne] gi|49480325|ref|YP_038149.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65321483|ref|ZP_00394442.1| COG4974: Site-specific recombinase XerD [Bacillus anthracis str. A2012] gi|118479292|ref|YP_896443.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis str. Al Hakam] gi|165871247|ref|ZP_02215897.1| integrase/recombinase XerD [Bacillus anthracis str. A0488] gi|167633747|ref|ZP_02392071.1| integrase/recombinase XerD [Bacillus anthracis str. A0442] gi|167639424|ref|ZP_02397695.1| integrase/recombinase XerD [Bacillus anthracis str. A0193] gi|170687265|ref|ZP_02878483.1| integrase/recombinase XerD [Bacillus anthracis str. A0465] gi|170705812|ref|ZP_02896275.1| integrase/recombinase XerD [Bacillus anthracis str. A0389] gi|177652642|ref|ZP_02935058.1| integrase/recombinase XerD [Bacillus anthracis str. A0174] gi|190565945|ref|ZP_03018864.1| integrase/recombinase XerD [Bacillus anthracis Tsiankovskii-I] gi|196038584|ref|ZP_03105892.1| integrase/recombinase XerD [Bacillus cereus NVH0597-99] gi|196047216|ref|ZP_03114432.1| integrase/recombinase XerD [Bacillus cereus 03BB108] gi|218905229|ref|YP_002453063.1| integrase/recombinase XerD [Bacillus cereus AH820] gi|225866075|ref|YP_002751453.1| integrase/recombinase XerD [Bacillus cereus 03BB102] gi|227816868|ref|YP_002816877.1| integrase/recombinase XerD [Bacillus anthracis str. CDC 684] gi|228929139|ref|ZP_04092166.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228947809|ref|ZP_04110096.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229093151|ref|ZP_04224269.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-42] gi|229123612|ref|ZP_04252807.1| Tyrosine recombinase xerD [Bacillus cereus 95/8201] gi|229186335|ref|ZP_04313500.1| Tyrosine recombinase xerD [Bacillus cereus BGSC 6E1] gi|229604915|ref|YP_002868390.1| integrase/recombinase XerD [Bacillus anthracis str. A0248] gi|254683858|ref|ZP_05147718.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str. CNEVA-9066] gi|254721693|ref|ZP_05183482.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str. A1055] gi|254736205|ref|ZP_05193911.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str. Western North America USA6153] gi|254744094|ref|ZP_05201777.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str. Kruger B] gi|254754126|ref|ZP_05206161.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str. Vollum] gi|254758184|ref|ZP_05210211.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str. Australia 94] gi|301055587|ref|YP_003793798.1| tyrosine recombinase [Bacillus anthracis CI] gi|30258812|gb|AAP28030.1| integrase/recombinase XerD [Bacillus anthracis str. Ames] gi|47551979|gb|AAT33431.2| integrase/recombinase XerD [Bacillus anthracis str. 'Ames Ancestor'] gi|49180924|gb|AAT56300.1| integrase/recombinase XerD [Bacillus anthracis str. Sterne] gi|49331881|gb|AAT62527.1| integrase/recombinase (tyrosine recombinase) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118418517|gb|ABK86936.1| tyrosine recombinase XerD subunit [Bacillus thuringiensis str. Al Hakam] gi|164713166|gb|EDR18693.1| integrase/recombinase XerD [Bacillus anthracis str. A0488] gi|167512483|gb|EDR87858.1| integrase/recombinase XerD [Bacillus anthracis str. A0193] gi|167531153|gb|EDR93840.1| integrase/recombinase XerD [Bacillus anthracis str. A0442] gi|170129352|gb|EDS98216.1| integrase/recombinase XerD [Bacillus anthracis str. A0389] gi|170668882|gb|EDT19627.1| integrase/recombinase XerD [Bacillus anthracis str. A0465] gi|172081977|gb|EDT67045.1| integrase/recombinase XerD [Bacillus anthracis str. A0174] gi|190562864|gb|EDV16830.1| integrase/recombinase XerD [Bacillus anthracis Tsiankovskii-I] gi|196021965|gb|EDX60656.1| integrase/recombinase XerD [Bacillus cereus 03BB108] gi|196030307|gb|EDX68906.1| integrase/recombinase XerD [Bacillus cereus NVH0597-99] gi|218535959|gb|ACK88357.1| integrase/recombinase XerD [Bacillus cereus AH820] gi|225786005|gb|ACO26222.1| integrase/recombinase XerD [Bacillus cereus 03BB102] gi|227002405|gb|ACP12148.1| integrase/recombinase XerD [Bacillus anthracis str. CDC 684] gi|228597129|gb|EEK54784.1| Tyrosine recombinase xerD [Bacillus cereus BGSC 6E1] gi|228659747|gb|EEL15392.1| Tyrosine recombinase xerD [Bacillus cereus 95/8201] gi|228690125|gb|EEL43919.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-42] gi|228811796|gb|EEM58130.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228830429|gb|EEM76039.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229269323|gb|ACQ50960.1| integrase/recombinase XerD [Bacillus anthracis str. A0248] gi|300377756|gb|ADK06660.1| tyrosine recombinase [Bacillus cereus biovar anthracis str. CI] Length = 296 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 94/304 (30%), Positives = 161/304 (52%), Gaps = 18/304 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++++ + +E+GL+K T+ SYE D + ++ +L + K + +++ I F+ Sbjct: 6 KDFIHYMVVEKGLAKNTVVSYERDLKSYVKYLQKVEQAK----SFHEVTRLHIVNFLQHL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + ++L R ++ I+SF ++L + + +++ + LP+ L+ V Sbjct: 62 KENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLS-------V 114 Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 D V LL T T R+ A+L LLY GLR+SE ++L +++ +R GKG+K Sbjct: 115 DEVEALLQTPKMTSAFGVRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCVGKGNK 174 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RI+PL +AI +Y + +L + LF G L+ F + +++L + Sbjct: 175 ERIIPLGSLATEAIQKYIEKGRRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEAN 234 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V+ + ++Y Sbjct: 235 IEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKDVYK 290 Query: 316 QTHP 319 Q HP Sbjct: 291 QFHP 294 >gi|332534749|ref|ZP_08410577.1| site-specific recombinase XerD [Pseudoalteromonas haloplanktis ANT/505] gi|332035836|gb|EGI72320.1| site-specific recombinase XerD [Pseudoalteromonas haloplanktis ANT/505] Length = 308 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 93/301 (30%), Positives = 161/301 (53%), Gaps = 17/301 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L +L +E+G+S+ TL +Y D +F +FL E +T+ + +I ++++ R Sbjct: 23 ETFLDSLYLEQGVSENTLSAYRSDLDKFCLFLK--GENLMTVTGL------DIESYLAHR 74 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + RS RS+S +K F +Y + KI ++S +LN+ K SLP+ L+E + Sbjct: 75 VDLGLKPRSTARSISALKRFYQYFVREKIISDSPMLNIAQPKAGQSLPKTLSEAEV---- 130 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL+ + + + R+ A+L LLY GLR+SE + L + I Q+ + ++GKG+K R Sbjct: 131 -EALLNAPNTEEAMGLRDKAMLELLYATGLRVSELVGLRMEQINLRQAVVFVKGKGNKER 189 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +VPL + ++ + + +F RG + F I+ + Sbjct: 190 LVPLGEEAMYWLEQFLKGGRAQMIKHATDFVFPSKRGVGMTRQTFWHRIKHYAILASVES 249 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + HT+RH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + ++ + H Sbjct: 250 PLSPHTMRHAFATHLLNHGADLRVVQMMLGHSDLSTTQIYTHVANER----LKSVHAEHH 305 Query: 319 P 319 P Sbjct: 306 P 306 >gi|58337257|ref|YP_193842.1| integrase-recombinase [Lactobacillus acidophilus NCFM] gi|227903842|ref|ZP_04021647.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796] gi|58254574|gb|AAV42811.1| integrase-recombinase [Lactobacillus acidophilus NCFM] gi|227868729|gb|EEJ76150.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796] Length = 301 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 98/305 (32%), Positives = 168/305 (55%), Gaps = 18/305 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L+ +IERGLS T+ +Y D ++L F+ +E +T T++ AF++++ Sbjct: 12 DYLRYSQIERGLSVNTINAYRQDLEEYLTFVK---KENMTSWPTEA---TDVDAFLARQH 65 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 S+ R +S ++ F ++L ++ I + +L + KK + LP AL + + + L+D Sbjct: 66 DLNKATSSISRLISSLRKFYQWLARQNIQKLNPMLEIDLPKKEHKLPIALTQDEVVNLLD 125 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + + + R+ AIL LY G+R+SE ++L Q++ +D +R+ GKG K R+ Sbjct: 126 Q-----PNTKQKLGLRDKAILETLYATGMRVSELINLKLQDLHEDLGLVRVLGKGAKERL 180 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNI---QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +P+ + +Y L LN+ +F RGK L + I++ + G+ Sbjct: 181 IPISSVALDWLKKYEKQVRDPLILNVGKDDEHIFLNNRGKQLTRQAIWQMIKKYCQLAGI 240 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 T HTLRH+FATHLL NG DLR +Q ILGH +STTQIYTN++ K+ ++++Y + Sbjct: 241 AKDVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKH----ILQVYQK 296 Query: 317 THPSI 321 THP + Sbjct: 297 THPRL 301 >gi|46908189|ref|YP_014578.1| integrase/recombinase XerD [Listeria monocytogenes serotype 4b str. F2365] gi|47093384|ref|ZP_00231151.1| integrase/recombinase XerD [Listeria monocytogenes str. 4b H7858] gi|226224560|ref|YP_002758667.1| integrase/recombinase [Listeria monocytogenes Clip81459] gi|254825549|ref|ZP_05230550.1| integrase/recombinase XerD [Listeria monocytogenes FSL J1-194] gi|254852857|ref|ZP_05242205.1| integrase/recombinase XerD [Listeria monocytogenes FSL R2-503] gi|254931873|ref|ZP_05265232.1| integrase/recombinase XerD [Listeria monocytogenes HPB2262] gi|254992940|ref|ZP_05275130.1| integrase/recombinase [Listeria monocytogenes FSL J2-064] gi|255520096|ref|ZP_05387333.1| integrase/recombinase [Listeria monocytogenes FSL J1-175] gi|300763733|ref|ZP_07073730.1| tyrosine recombinase XerD [Listeria monocytogenes FSL N1-017] gi|71153414|sp|Q71Y59|XERD_LISMF RecName: Full=Tyrosine recombinase xerD gi|46881459|gb|AAT04755.1| integrase/recombinase XerD [Listeria monocytogenes serotype 4b str. F2365] gi|47018255|gb|EAL09021.1| integrase/recombinase XerD [Listeria monocytogenes str. 4b H7858] gi|225877022|emb|CAS05731.1| Putative integrase/recombinase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606190|gb|EEW18798.1| integrase/recombinase XerD [Listeria monocytogenes FSL R2-503] gi|293583424|gb|EFF95456.1| integrase/recombinase XerD [Listeria monocytogenes HPB2262] gi|293594790|gb|EFG02551.1| integrase/recombinase XerD [Listeria monocytogenes FSL J1-194] gi|300515469|gb|EFK42519.1| tyrosine recombinase XerD [Listeria monocytogenes FSL N1-017] gi|328466303|gb|EGF37460.1| tyrosine recombinase xerD [Listeria monocytogenes 1816] gi|328472797|gb|EGF43646.1| tyrosine recombinase xerD [Listeria monocytogenes 220] Length = 297 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 96/309 (31%), Positives = 162/309 (52%), Gaps = 27/309 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L L +ERGLS T+++YE D R F+ Y + + L ++I F++ Sbjct: 6 EDFLHFLIVERGLSANTIKAYERDLRYFVS----YMDVAKGLTDPNTLERSDIVGFMAFA 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + RS+ R ++ ++SF YL + ++ + K++ LP+ LN + Sbjct: 62 RQEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLN-------L 114 Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 D+V LL +S + + R+ A++ +LY GLR++E +SL ++ ++ GKGDK Sbjct: 115 DDVEKLLSSSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDK 174 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI------RGKPLNPGVFQRYIRQL 250 RI+PL + + +Y + + ++ P +R G+ L F + ++ + Sbjct: 175 ERIIPLGKTATTVLEKYLE----EARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGI 230 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 + G+ T HTLRHSFATHLL NG DLRS+Q +LGH +STTQIYT+V + Sbjct: 231 AKESGIEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLR----L 286 Query: 311 MEIYDQTHP 319 ++Y Q HP Sbjct: 287 KDVYKQFHP 295 >gi|167585124|ref|ZP_02377512.1| site-specific tyrosine recombinase XerC [Burkholderia ubonensis Bu] Length = 306 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 94/318 (29%), Positives = 164/318 (51%), Gaps = 33/318 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L NL+ R LS TL++Y + + A + + LS ++R +++ Sbjct: 9 YLSNLKHVRQLSDHTLRAYTHELGELKKLAAG--------RPLEALSAVDMRGAVARAHA 60 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS+ LS ++F ++L +R + + +R K++ +LP+AL+ A L+D Sbjct: 61 AGLSARSISHRLSAWRAFYRWLAQRIEMPANPVAAVRAPKRAKTLPKALSVDDATALMDA 120 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-----------QSTLR 189 L T+ R+ AIL LLY GLR++E + L + D ++ + Sbjct: 121 PLPGTTEGL-----RDHAILELLYSSGLRLAELIGLDVRYAQADGYRSAGWLDLAEAEVT 175 Query: 190 IQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 ++GKG+K R VP+ RKAI L + + + PLF +RG ++PGV + + Sbjct: 176 VRGKGNKERKVPV---GRKAIDALNAWLAVRGEFVKHDPHPLFLSVRGNRMSPGVVRERV 232 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 ++ G+P H LRHSFATH+L + GDLR++Q +LGH ++ TQ+YT+++ ++ Sbjct: 233 KRAALAAGIPAHVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQVYTSLDFQH-- 290 Query: 308 DWMMEIYDQTHPSITQKD 325 + +IYD HP ++D Sbjct: 291 --LAKIYDSAHPRAKKRD 306 >gi|329943079|ref|ZP_08291853.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila psittaci Cal10] gi|313848235|emb|CBY17236.1| putative site-specific recombinase [Chlamydophila psittaci RD1] gi|328814626|gb|EGF84616.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila psittaci Cal10] Length = 299 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 105/303 (34%), Positives = 158/303 (52%), Gaps = 33/303 (10%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L ++RGLS ++ +Y D FL A I +I ++S + F+ + +K Sbjct: 18 LSVDRGLSCNSISAYIQDITLFLKINA--------ITSIAEISQDSVHLFVDQLHKRKEA 69 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 + +L R L +K F ++LK+ K+ ++ + K LP L K+ TL+ + Sbjct: 70 EATLARRLIALKVFFRFLKEAKLLEHPPLIEHPKIWKR--LPTVLTPKEVDTLL--AIPK 125 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + + I R++AIL+ LY G+R+SE L ++ DD LR+ GKG K R+VPL Sbjct: 126 KTTTSSMISTRDTAILHTLYSTGIRVSELCGLHIGDVSDD--FLRVTGKGSKTRLVPLGK 183 Query: 205 SVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLN-PGVFQR---YIRQLRRYLGL 256 KAI Y LCPF NL + P LF IRG+ L V++R Y +Q+ Sbjct: 184 LASKAIDAY--LCPFRENLQKKQPEEHHLFLSIRGRKLERSCVWKRIHYYAKQVTHKRVS 241 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 P H+LRH+FATHLL N DLR IQ +LGH R+++T++YT+V D +ME + Sbjct: 242 P-----HSLRHAFATHLLDNKADLRVIQEMLGHARIASTEVYTHV----AADTLMENFLS 292 Query: 317 THP 319 HP Sbjct: 293 YHP 295 >gi|154686593|ref|YP_001421754.1| site-specific tyrosine recombinase XerD [Bacillus amyloliquefaciens FZB42] gi|154352444|gb|ABS74523.1| XerD [Bacillus amyloliquefaciens FZB42] Length = 296 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 93/302 (30%), Positives = 156/302 (51%), Gaps = 14/302 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++++ + +ERGLS+ T+ SYE D + + +FL E + I + ++ I ++ Sbjct: 6 KDFIHYVRVERGLSQNTMMSYERDLKSYSLFLT----ETLQITSWNDVTRLHIIQYLKHI 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + ++ R L+ I+SF ++L + K + +++ K +LP+ L + L+ Sbjct: 62 KDSGKSGKTSARHLASIRSFHQFLLREKAADKDPSVHIETQKTERTLPKVLALHEVERLL 121 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D L + R+ A+L LLY G+R+SE + L ++ +R GKG K R Sbjct: 122 DTPKLDSP-----FGLRDKAMLELLYATGIRVSEMIELKLSDVHLTMGFVRCFGKGRKER 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 IVP+ + AI Y + L N+ LF G+ ++ F + ++++ G+ Sbjct: 177 IVPIGEAASHAIEAYIEKARGKLLKKNVTEALFLNHHGRQISRQGFWKNLKKIALEAGIK 236 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V + ++Y Q Sbjct: 237 KELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTR----LKDVYKQY 292 Query: 318 HP 319 HP Sbjct: 293 HP 294 >gi|311109403|ref|YP_003982256.1| tyrosine recombinase XerC [Achromobacter xylosoxidans A8] gi|310764092|gb|ADP19541.1| tyrosine recombinase XerC [Achromobacter xylosoxidans A8] Length = 331 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 101/319 (31%), Positives = 159/319 (49%), Gaps = 27/319 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL++LE R S TL Y + FL LA + K+ + I IR F+++ Sbjct: 24 WLRHLETNRRYSPHTLDGYRREL-HFLRELADHA--KLPLDKI---GNGHIRQFVARLHA 77 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q G RSL R+L+ + F ++ + + +R K LP+AL+ +Q L+D Sbjct: 78 QGRGPRSLARTLAAWRGFYQWWAPAIELAGNPVAGVRAPKAPRGLPKALSVEQTQALLDR 137 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL-----------TPQNIMDDQSTLR 189 + E + R+ A+L LLY GLR+SE + L + + +++ + Sbjct: 138 APAQVATEPAAL--RDQAMLELLYSSGLRLSELVGLDLRYERSGNYESRGWLSLEEAEVI 195 Query: 190 IQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245 + GKG K R VP+ L ++RK I L PF LF G RG+ ++P V Q Sbjct: 196 VLGKGGKRRSVPVGQAALEALRKWIAVRPQLTPFTAQPEDAAALFLGARGRRISPRVVQL 255 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + ++ + G+P H LRHSFA+H+L + DLR++Q +LGH +STTQIYT ++ ++ Sbjct: 256 QLARIAQQAGVPTHVHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQIYTRLDFQH 315 Query: 306 GGDWMMEIYDQTHPSITQK 324 + YDQ HP +K Sbjct: 316 ----LARAYDQAHPRAGRK 330 >gi|52141402|ref|YP_085426.1| site-specific tyrosine recombinase XerD [Bacillus cereus E33L] gi|228987282|ref|ZP_04147403.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229157674|ref|ZP_04285749.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 4342] gi|51974871|gb|AAU16421.1| integrase/recombinase (tyrosine recombinase) [Bacillus cereus E33L] gi|228625631|gb|EEK82383.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 4342] gi|228772511|gb|EEM20956.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 296 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 94/304 (30%), Positives = 161/304 (52%), Gaps = 18/304 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++++ + +E+GL+K T+ SYE D + ++ +L + K + +++ I F+ Sbjct: 6 KDFIHYMVVEKGLAKNTVVSYERDLKSYVKYLQKVEQAK----SFHEVTRLHIVNFLQHL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + ++L R ++ I+SF ++L + + +++ + LP+ L+ V Sbjct: 62 KENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLS-------V 114 Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 D V LL T T R+ A+L LLY GLR+SE ++L +++ +R GKG+K Sbjct: 115 DEVEALLQTPKMTSAFGVRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNK 174 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RI+PL +AI +Y + +L + LF G L+ F + +++L + Sbjct: 175 ERIIPLGSLATEAIQKYIEKGRRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEAN 234 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V+ + ++Y Sbjct: 235 IEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKDVYK 290 Query: 316 QTHP 319 Q HP Sbjct: 291 QFHP 294 >gi|315152400|gb|EFT96416.1| tyrosine recombinase XerC [Enterococcus faecalis TX0031] Length = 299 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 100/322 (31%), Positives = 162/322 (50%), Gaps = 28/322 (8%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 ME N PE+ + L+ +ERG S+ T ++Y+ D + F FL T Sbjct: 1 MEEKNWPELFARYLI-----------VERGYSEKTKKAYQEDIQHFFSFLK--TSGNDNY 47 Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 T+ L ++RA++S+ Q+ S+ R ++ ++SF ++L K + E+ + K Sbjct: 48 LTVEHL---DVRAYLSELYDQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKK 104 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 K LPR EK+ + L ++ + +D RN A+L +LYG G+R+SE +LT Sbjct: 105 KQLRLPRFFYEKEM-----DALFESAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVDA 159 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKP 237 + S L + GKG+K R VP + A+ +Y + L Q +F G+ Sbjct: 160 VDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGEQ 219 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + P + + QL + L + H LRH+FATHLL+NG D+R++Q +LGH LSTTQI Sbjct: 220 ITPTGIEYVLNQLIKKSSLNVEIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQI 279 Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319 Y +V ++ + + Y HP Sbjct: 280 YAHVTKES----LQKNYRTFHP 297 >gi|152988673|ref|YP_001351339.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa PA7] gi|166918894|sp|A6VE54|XERC_PSEA7 RecName: Full=Tyrosine recombinase xerC gi|150963831|gb|ABR85856.1| tyrosine recombinase XerC [Pseudomonas aeruginosa PA7] Length = 303 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 103/309 (33%), Positives = 158/309 (51%), Gaps = 27/309 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L++L ER +S TL Y+ R L LA EK + L +R F+++ Sbjct: 8 FLEHLRSERQVSAHTLDGYQ---RDLLKILAL--AEKAGLTDWNALDTRTLRTFVARLHQ 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q RSL R LS + F +YL + + K LPR L+ +AL L+D Sbjct: 63 QGQSSRSLARLLSATRGFYQYLLREGRCRHDPANGLSAPKSPRKLPRTLDADRALQLLDG 122 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + E +I R+ A+L L Y GLR+SE + L + + + +R++GKG+K+R + Sbjct: 123 AV-----EDDFIARRDQALLELFYSSGLRLSELVGLDLEWLDLKEGLVRVRGKGNKVREL 177 Query: 201 PLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR-RYLG 255 P+ + R+A+ + L P D +F G GK L P Q +RQ R LG Sbjct: 178 PVGKAARQALEAWLPLRAQATPEDG------AVFIGRGGKRLTPRAVQLRVRQAGVRELG 231 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 L H LRHSFA+HLL + GDLR++Q +LGH ++TTQIYT+++ ++ + +YD Sbjct: 232 QHLHP--HMLRHSFASHLLESSGDLRAVQELLGHADIATTQIYTHLDFQH----LASVYD 285 Query: 316 QTHPSITQK 324 + HP +K Sbjct: 286 RAHPRAKRK 294 >gi|16803994|ref|NP_465479.1| hypothetical protein lmo1955 [Listeria monocytogenes EGD-e] gi|47097098|ref|ZP_00234668.1| integrase/recombinase XerD [Listeria monocytogenes str. 1/2a F6854] gi|224498595|ref|ZP_03666944.1| hypothetical protein LmonF1_02414 [Listeria monocytogenes Finland 1988] gi|224501245|ref|ZP_03669552.1| hypothetical protein LmonFR_01770 [Listeria monocytogenes FSL R2-561] gi|254827160|ref|ZP_05231847.1| integrase/recombinase XerD [Listeria monocytogenes FSL N3-165] gi|254899348|ref|ZP_05259272.1| hypothetical protein LmonJ_06029 [Listeria monocytogenes J0161] gi|254912513|ref|ZP_05262525.1| tyrosine recombinase XerD [Listeria monocytogenes J2818] gi|254936840|ref|ZP_05268537.1| integrase/recombinase XerD [Listeria monocytogenes F6900] gi|255028942|ref|ZP_05300893.1| hypothetical protein LmonL_06711 [Listeria monocytogenes LO28] gi|34222939|sp|Q8Y5V0|XERD_LISMO RecName: Full=Tyrosine recombinase xerD gi|16411408|emb|CAD00033.1| lmo1955 [Listeria monocytogenes EGD-e] gi|47014543|gb|EAL05506.1| integrase/recombinase XerD [Listeria monocytogenes str. 1/2a F6854] gi|258599542|gb|EEW12867.1| integrase/recombinase XerD [Listeria monocytogenes FSL N3-165] gi|258609436|gb|EEW22044.1| integrase/recombinase XerD [Listeria monocytogenes F6900] gi|293590498|gb|EFF98832.1| tyrosine recombinase XerD [Listeria monocytogenes J2818] Length = 297 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 95/309 (30%), Positives = 162/309 (52%), Gaps = 27/309 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L L +ERGLS T+++YE D F+ ++ E + L ++I F++ Sbjct: 6 EDFLHFLIVERGLSANTIKAYERDLHYFVSYMDVTKE----LTDPNTLERSDIVGFMAFA 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + RS+ R ++ ++SF YL + ++ + K++ LP+ LN + Sbjct: 62 RQEGKSPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLN-------L 114 Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 D+V LL +S + + R+ A++ +LY GLR++E +SL ++ ++ GKGDK Sbjct: 115 DDVEKLLSSSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDK 174 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI------RGKPLNPGVFQRYIRQL 250 RI+PL + + +Y + + ++ P +R G+ L F + ++ + Sbjct: 175 ERIIPLGKTATTVLEKYLE----EARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGI 230 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 + G+ T HTLRHSFATHLL NG DLRS+Q +LGH +STTQIYT+V + Sbjct: 231 AKESGIEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLR----L 286 Query: 311 MEIYDQTHP 319 ++Y Q HP Sbjct: 287 KDVYKQFHP 295 >gi|254831444|ref|ZP_05236099.1| hypothetical protein Lmon1_08823 [Listeria monocytogenes 10403S] gi|284802400|ref|YP_003414265.1| hypothetical protein LM5578_2156 [Listeria monocytogenes 08-5578] gi|284995542|ref|YP_003417310.1| hypothetical protein LM5923_2107 [Listeria monocytogenes 08-5923] gi|284057962|gb|ADB68903.1| hypothetical protein LM5578_2156 [Listeria monocytogenes 08-5578] gi|284061009|gb|ADB71948.1| hypothetical protein LM5923_2107 [Listeria monocytogenes 08-5923] Length = 297 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 95/309 (30%), Positives = 162/309 (52%), Gaps = 27/309 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L L +ERGLS T+++YE D F+ ++ E + L ++I F++ Sbjct: 6 EDFLHFLIVERGLSANTIKAYERDLHYFVSYMDVTKE----LTDPNTLERSDIVGFMAFA 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + RS+ R ++ ++SF YL + ++ + K++ LP+ LN + Sbjct: 62 RQEGKSPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAKGLPKVLN-------L 114 Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 D+V LL +S + + R+ A++ +LY GLR++E +SL ++ ++ GKGDK Sbjct: 115 DDVEKLLSSSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDK 174 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI------RGKPLNPGVFQRYIRQL 250 RI+PL + + +Y + + ++ P +R G+ L F + ++ + Sbjct: 175 ERIIPLGKTATTVLEKYLE----EARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGI 230 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 + G+ T HTLRHSFATHLL NG DLRS+Q +LGH +STTQIYT+V + Sbjct: 231 AKESGIEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLR----L 286 Query: 311 MEIYDQTHP 319 ++Y Q HP Sbjct: 287 KDVYKQFHP 295 >gi|42783204|ref|NP_980451.1| site-specific tyrosine recombinase XerD [Bacillus cereus ATCC 10987] gi|206976263|ref|ZP_03237171.1| integrase/recombinase XerD [Bacillus cereus H3081.97] gi|217961583|ref|YP_002340153.1| site-specific tyrosine recombinase XerD [Bacillus cereus AH187] gi|229140825|ref|ZP_04269370.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST26] gi|229198213|ref|ZP_04324921.1| Tyrosine recombinase xerD [Bacillus cereus m1293] gi|42739132|gb|AAS43059.1| integrase/recombinase XerD [Bacillus cereus ATCC 10987] gi|206745459|gb|EDZ56858.1| integrase/recombinase XerD [Bacillus cereus H3081.97] gi|217064224|gb|ACJ78474.1| integrase/recombinase XerD [Bacillus cereus AH187] gi|228585232|gb|EEK43342.1| Tyrosine recombinase xerD [Bacillus cereus m1293] gi|228642615|gb|EEK98901.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST26] gi|324327997|gb|ADY23257.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis serovar finitimus YBT-020] Length = 296 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 94/304 (30%), Positives = 161/304 (52%), Gaps = 18/304 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++++ + +E+GL+K T+ SYE D + ++ +L + K + +++ I F+ Sbjct: 6 KDFIHYMVVEKGLAKNTVVSYERDLKSYVKYLQNVEQAK----SFHEVTRLHIVNFLQHL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + ++L R ++ I+SF ++L + + +++ + LP+ L+ V Sbjct: 62 KENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLS-------V 114 Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 D V LL T T R+ A+L LLY GLR+SE ++L +++ +R GKG+K Sbjct: 115 DEVEALLQTPKMTSAFGVRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNK 174 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RI+PL +AI +Y + +L + LF G L+ F + +++L + Sbjct: 175 ERIIPLGSLATEAIQKYIEKGRRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEAN 234 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V+ + ++Y Sbjct: 235 IEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKDVYK 290 Query: 316 QTHP 319 Q HP Sbjct: 291 QFHP 294 >gi|239500991|ref|ZP_04660301.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB900] Length = 304 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 95/310 (30%), Positives = 174/310 (56%), Gaps = 24/310 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL+ +I+ S+ T+ +YE D R FL F +K+ + R + +++R ++++R Sbjct: 11 WLKERKIQ-NQSEHTITAYERDVRSFLEFCEL---KKVDL---RNVEASDLREYLAQRVE 63 Query: 81 Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q ++ S++R L+ I+ F+K+ ++ K + + + ++ LP ++ + ++D Sbjct: 64 QDQLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILD 123 Query: 140 NVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + + + W+ R+ A+L LLY GLR++E LT ++I ++ +RI GKG+K R Sbjct: 124 QPMPEKPVDQQLWL--RDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTR 181 Query: 199 IVPLLPSVRKAILEY---YDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 IVP ++++L + Y++ FD N ++ F RG L P ++ ++ + Sbjct: 182 IVPFGKKAKESLLNWLKIYNIWKGHFDQNASV----FISQRGSALTPRQIEKRVKLQAQR 237 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ + H LRH FA+H+LS+ GDLRS+Q +LGH LSTTQIYT+++ D + ++ Sbjct: 238 AGVNVDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDF----DHLAQV 293 Query: 314 YDQTHPSITQ 323 YDQ HP T+ Sbjct: 294 YDQAHPRATK 303 >gi|153005549|ref|YP_001379874.1| tyrosine recombinase XerC [Anaeromyxobacter sp. Fw109-5] gi|152029122|gb|ABS26890.1| tyrosine recombinase XerC [Anaeromyxobacter sp. Fw109-5] Length = 311 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 105/322 (32%), Positives = 153/322 (47%), Gaps = 25/322 (7%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 L E Q + L ER S T+++Y D Q+ +LA Q + S +RA Sbjct: 8 LPPEVQRFAVYLRTERRASPHTVKAYLTDLSQYAAYLAGAG------QGVVPSSPALVRA 61 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 F++ R + G SL R LS I++ ++L + + + ++ K+ LP+ L E++ Sbjct: 62 FLA-RAAGEAGATSLGRKLSAIRTLYRFLVREGLAAGNPARSVSGPKRPMRLPQVLPEEE 120 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 LV+ L ++ R+ A L LLY GLR+SE L +I +R+ GK Sbjct: 121 VAALVEAPELAAP-----LEQRDRAFLELLYASGLRVSELTGLDLASIDLSGRLVRVLGK 175 Query: 194 GDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 +K RIVP S +A+ Y D L + + LF RG L+P R + Sbjct: 176 RNKERIVPFGASAGEAVRRYLDEARPILAAGRDHATAEEALFLNYRGGRLSPRSVARRLD 235 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 + GLP H LRH FATHLL NG DLR IQ +LGH LSTTQ YT+V D Sbjct: 236 RWVLATGLPRHVHPHVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTHV------D 289 Query: 309 W--MMEIYDQTHPSITQKDKKN 328 W + +YD HP ++ ++ Sbjct: 290 WKRLAAVYDAAHPRAKRERERG 311 >gi|145295553|ref|YP_001138374.1| site-specific tyrosine recombinase XerD [Corynebacterium glutamicum R] gi|140845473|dbj|BAF54472.1| hypothetical protein [Corynebacterium glutamicum R] Length = 304 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 95/306 (31%), Positives = 149/306 (48%), Gaps = 16/306 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + WL +L +ERGLS TL +Y D ++ +L E + IR ++ + +++ Sbjct: 8 KTWLTHLAVERGLSANTLSNYRRDVERYCDWL-----EAAGLDDIRDITTAHVESYVKDL 62 Query: 79 RTQKIGDRSLKRSLSG-----IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 R G ++L S +G + K+ ++ LP L+ + Sbjct: 63 RRGIDGQQALSASSAGRALIVARGLHKFALMEGEVAADVAADVSPPAMGRHLPDTLSINE 122 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L+D + H+ T +D R+ A++ LLYG G RISEA+ L ++ + LRI GK Sbjct: 123 VALLIDAIP-HSDIATP-VDLRDRALVELLYGTGARISEAIGLAVDDVSEMPEVLRITGK 180 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 G K RIVP ++A+ EY L+ LF RG PL+ +++ Sbjct: 181 GSKKRIVPFGSMAQQAVREYLIRARPALSKGKSHALFLNQRGGPLSRQSAWAVLKKTVER 240 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 GL + HTLRHSFATHLL G D+R +Q +LGH ++TTQIYT++ + D + E+ Sbjct: 241 AGLDKDISPHTLRHSFATHLLEGGADVRVVQELLGHSSVTTTQIYTHITA----DSLREV 296 Query: 314 YDQTHP 319 + HP Sbjct: 297 WRGAHP 302 >gi|228922841|ref|ZP_04086139.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836896|gb|EEM82239.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 296 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 95/304 (31%), Positives = 161/304 (52%), Gaps = 18/304 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++++ + +E+GL+K T+ SYE D + ++ +L + K T +++ I F+ Sbjct: 6 KDFIHYMVVEKGLAKNTVVSYERDLKSYIKYLQNVEQTK----TFHEVTRLHIVNFLQYL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + ++L R ++ I+SF ++L + + +++ + LP+ L+ V Sbjct: 62 KENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLS-------V 114 Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 D V LL T T R+ A+L LLY GLR+SE ++L +++ +R GKG+K Sbjct: 115 DEVEALLQTPKMTSAFGIRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNK 174 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RI+PL +AI +Y + +L + LF G L+ F + +++L + Sbjct: 175 ERIIPLGSLATEAIQKYIEKGRRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEAN 234 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V+ + ++Y Sbjct: 235 IEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKDVYK 290 Query: 316 QTHP 319 Q HP Sbjct: 291 QFHP 294 >gi|319785871|ref|YP_004145346.1| tyrosine recombinase XerC [Pseudoxanthomonas suwonensis 11-1] gi|317464383|gb|ADV26115.1| tyrosine recombinase XerC [Pseudoxanthomonas suwonensis 11-1] Length = 291 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 95/306 (31%), Positives = 160/306 (52%), Gaps = 20/306 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q++L++L +ER +S TL +Y D Q L AF E + ++ +R F++ Sbjct: 5 QDFLEHLRVERAMSPHTLDAYRRDL-QALQDWAFERGEDVV-----RMDGGRLREFVASE 58 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + SL+R LS +S+ +L K + S + +R + LP+ L+ +A+ LV Sbjct: 59 HRRGLSPTSLQRRLSACRSYYAWLLKHGVIEASPAIGLRAPRAPRKLPQVLDVDEAVQLV 118 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + + TS + R+ A+L L Y GLR+SE +L +++ DQ + + GKG + R Sbjct: 119 E---VDTSAP---LGLRDRALLELFYSSGLRLSELCALRWRDLHLDQGLVTVLGKGSRQR 172 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VP+ R+A+ E+ + + F G G P++ Q +RQL GL Sbjct: 173 SVPVGSHARRALEEWRSSTGAGSDDFV----FPGRGGGPISQRAVQVRMRQLAARQGLFK 228 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 H LRHSFA+H+L + GDLR +Q +LGH ++TTQIYT+++ ++ + ++YD H Sbjct: 229 HVHPHMLRHSFASHVLESSGDLRGVQELLGHADIATTQIYTHLDFQH----LAKVYDAAH 284 Query: 319 PSITQK 324 P +K Sbjct: 285 PRAKRK 290 >gi|228916729|ref|ZP_04080294.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228935411|ref|ZP_04098229.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824163|gb|EEM69977.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228842916|gb|EEM87999.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 296 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 94/304 (30%), Positives = 161/304 (52%), Gaps = 18/304 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++++ + +E+GL+K T+ SYE D + ++ +L + K + +++ I F+ Sbjct: 6 KDFIHYMVVEKGLAKNTVVSYERDLKSYVKYLQKVEQAK----SFHEVTRLHIVNFLQHL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL--NEKQALT 136 + ++L R ++ I+SF ++L + + +++ + LP+ L NE +AL Sbjct: 62 KENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVNEVEAL- 120 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L T T R+ A+L LLY GLR+SE ++L +++ +R GKG+K Sbjct: 121 ------LQTPKMTSAFGVRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCVGKGNK 174 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RI+PL +AI +Y + +L + LF G L+ F + +++L + Sbjct: 175 ERIIPLGSLATEAIQKYIEKGRRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEAN 234 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V+ + ++Y Sbjct: 235 IEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKDVYK 290 Query: 316 QTHP 319 Q HP Sbjct: 291 QFHP 294 >gi|28198608|ref|NP_778922.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa Temecula1] gi|182681291|ref|YP_001829451.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa M23] gi|73920479|sp|Q87DI2|XERC_XYLFT RecName: Full=Tyrosine recombinase xerC gi|254799363|sp|B2IA18|XERC_XYLF2 RecName: Full=Tyrosine recombinase xerC gi|28056692|gb|AAO28571.1| site-specific recombinase [Xylella fastidiosa Temecula1] gi|182631401|gb|ACB92177.1| tyrosine recombinase XerC [Xylella fastidiosa M23] gi|307579742|gb|ADN63711.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa subsp. fastidiosa GB514] Length = 294 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 93/308 (30%), Positives = 156/308 (50%), Gaps = 19/308 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++ L +ERG+S TL +Y R +A+ ++ + + L +++AF+S Sbjct: 6 EDFFAFLHVERGMSSHTLDAYR---RDIGALIAWGGQQ--AVGEVVALDRAQLQAFVSAE 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + +SL+R LS + F +L KR + +R K LPR L+ +A++ V Sbjct: 61 HRRGLSAKSLQRRLSACRGFYTWLVKRGHIAVNPAAGLRAPKALRKLPRILDADEAVSFV 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 +T + R+ A+L L Y GLR+SE L + D + + GKG + R Sbjct: 121 -----QIPTDTP-LGLRDRALLELFYSSGLRLSELCGLRWDGLDLDAGLVSVLGKGSRQR 174 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +VP+ A+ E+ C Q P+F G G P++ Q I+QL + G+ Sbjct: 175 VVPVGSYALSALREW---CASSGG-GAQQPVFPGRYGGPISARAVQVRIKQLAQRQGMAK 230 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 H LRHSFA+HLL + GDLR +Q +LGH ++TTQIYT+++ + ++ ++YD H Sbjct: 231 HVHPHMLRHSFASHLLESSGDLRGVQELLGHADITTTQIYTHLDFQ----YLSKVYDAAH 286 Query: 319 PSITQKDK 326 P +K + Sbjct: 287 PRARRKAR 294 >gi|169632680|ref|YP_001706416.1| site-specific tyrosine recombinase [Acinetobacter baumannii SDF] gi|169151472|emb|CAP00223.1| site-specific tyrosine recombinase [Acinetobacter baumannii] Length = 308 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 95/310 (30%), Positives = 174/310 (56%), Gaps = 24/310 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL+ +I+ S+ T+ +YE D R FL F +K+ + R + +++R ++++R Sbjct: 15 WLKERKIQ-NQSEHTITAYERDVRSFLEFCEL---KKVDL---RNVEASDLREYLAQRVE 67 Query: 81 Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q ++ S++R L+ I+ F+K+ ++ K + + + ++ LP ++ + ++D Sbjct: 68 QDQLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILD 127 Query: 140 NVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + + + W+ R+ A+L LLY GLR++E LT ++I ++ +RI GKG+K R Sbjct: 128 QPMPEKPVDQQLWL--RDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTR 185 Query: 199 IVPLLPSVRKAILEY---YDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 IVP ++++L + Y++ FD N ++ F RG L P ++ ++ + Sbjct: 186 IVPFGKKAKESLLNWLKIYNIWKGHFDQNASV----FISQRGGALTPRQIEKRVKLQAQR 241 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ + H LRH FA+H+LS+ GDLRS+Q +LGH LSTTQIYT+++ D + ++ Sbjct: 242 AGVNVDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDF----DHLAQV 297 Query: 314 YDQTHPSITQ 323 YDQ HP T+ Sbjct: 298 YDQAHPRATK 307 >gi|262376584|ref|ZP_06069812.1| tyrosine recombinase XerC [Acinetobacter lwoffii SH145] gi|262308294|gb|EEY89429.1| tyrosine recombinase XerC [Acinetobacter lwoffii SH145] Length = 305 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 96/307 (31%), Positives = 166/307 (54%), Gaps = 16/307 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL+ EI+ SK TLQ+Y D FL F E++ + + T++R F++++ Sbjct: 10 WLKEREIQ-NQSKHTLQAYARDVSDFL---EFCQREQLNLNDV---EATDLRQFLAEKVE 62 Query: 81 Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q ++ SL+R LS I+ F+K+ ++ + + + + ++S LP ++ + ++D Sbjct: 63 QHQLSPSSLQRMLSSIRQFMKWAEQAQHLAFNPADDFQLKRQSRPLPGMVDIETVNQIID 122 Query: 140 NVLLHTS-HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + W+ R+ AIL LLY GLR++E +L ++I ++ LRI GKG+K R Sbjct: 123 QPAPENEIQQQMWL--RDKAILELLYSSGLRLAELQNLRIKDIDFNRQLLRITGKGNKTR 180 Query: 199 IVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 IVP + +++ + + P ++ + + +F +G PL + ++ + G+ Sbjct: 181 IVPFGSKAKASVMAWLQVYPLWNGDFVPEANVFITQKGNPLGARQIENRVKFQAQRAGVN 240 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + H LRH FA+H+LSN DLR++Q +LGH LSTTQIYT+V+ D + +IYDQ Sbjct: 241 VDLHPHLLRHCFASHMLSNSRDLRAVQEMLGHSNLSTTQIYTHVDF----DHLAQIYDQA 296 Query: 318 HPSITQK 324 HP K Sbjct: 297 HPRAQHK 303 >gi|19552635|ref|NP_600637.1| site-specific tyrosine recombinase XerD [Corynebacterium glutamicum ATCC 13032] gi|62390303|ref|YP_225705.1| site-specific tyrosine recombinase XerD [Corynebacterium glutamicum ATCC 13032] gi|34222909|sp|Q8NQL5|XERD_CORGL RecName: Full=Tyrosine recombinase xerD gi|21324187|dbj|BAB98812.1| Integrase [Corynebacterium glutamicum ATCC 13032] gi|41325640|emb|CAF21429.1| INTEGRASE/RECOMBINASE XERD [Corynebacterium glutamicum ATCC 13032] Length = 304 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 95/306 (31%), Positives = 149/306 (48%), Gaps = 16/306 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + WL +L +ERGLS TL +Y D ++ +L E + IR ++ + +++ Sbjct: 8 KTWLTHLAVERGLSANTLSNYRRDVERYCDWL-----EAAGLDDIRDITTAHVESYVKDL 62 Query: 79 RTQKIGDRSLKRSLSG-----IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 R G ++L S +G + K+ ++ LP L+ + Sbjct: 63 RRGIDGQQALSASSAGRALIVARGLHKFALMEGEVAADVAADVSPPAMGRHLPDTLSINE 122 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L+D + H+ T +D R+ A++ LLYG G RISEA+ L ++ + LRI GK Sbjct: 123 VALLIDAIP-HSDIATP-VDLRDRALVELLYGTGARISEAIGLAVDDVSEMPEVLRITGK 180 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 G K RIVP ++A+ EY L+ LF RG PL+ +++ Sbjct: 181 GSKQRIVPFGSMAQQAVREYLVRARPALSKGKSHALFLNQRGGPLSRQSAWAVLKKTVER 240 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 GL + HTLRHSFATHLL G D+R +Q +LGH ++TTQIYT++ + D + E+ Sbjct: 241 AGLDKDISPHTLRHSFATHLLEGGADVRVVQELLGHSSVTTTQIYTHITA----DSLREV 296 Query: 314 YDQTHP 319 + HP Sbjct: 297 WRGAHP 302 >gi|229031733|ref|ZP_04187726.1| Tyrosine recombinase xerD [Bacillus cereus AH1271] gi|228729617|gb|EEL80604.1| Tyrosine recombinase xerD [Bacillus cereus AH1271] Length = 296 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 94/304 (30%), Positives = 161/304 (52%), Gaps = 18/304 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++++ + +E+GL+K T+ SYE D + ++ +L + K + +++ I F+ Sbjct: 6 KDFIHYMVVEKGLAKNTVVSYERDLKSYVKYLQNVEQAK----SFHEVTRLHIVNFLQHL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + ++L R ++ I+SF ++L + + +++ + LP+ L+ + Sbjct: 62 KENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLS-------I 114 Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 D V LL T T R+ A+L LLY GLR+SE ++L ++I +R GKG+K Sbjct: 115 DEVEALLQTPKMTSAFGVRDKAMLELLYATGLRVSELIALNLEDIHLTMGFVRCIGKGNK 174 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RI+PL +AI +Y + +L + LF G L+ F + +++L + Sbjct: 175 ERIIPLGSLATEAIQKYIEKGRRELMGKRVVDALFLNHHGNRLSRQGFWKILKRLAKEAN 234 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V+ + ++Y Sbjct: 235 IEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKAR----LKDVYK 290 Query: 316 QTHP 319 Q HP Sbjct: 291 QFHP 294 >gi|223985629|ref|ZP_03635679.1| hypothetical protein HOLDEFILI_02985 [Holdemania filiformis DSM 12042] gi|223962396|gb|EEF66858.1| hypothetical protein HOLDEFILI_02985 [Holdemania filiformis DSM 12042] Length = 323 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 110/316 (34%), Positives = 155/316 (49%), Gaps = 17/316 (5%) Query: 8 EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT--IQTIRQ 65 E +L+ + +++ + R S T SY D +F +LA E+KIT Q + Sbjct: 9 EAAKKQLMSVAEEFVEFIVARRSGSPATADSYGRDLERFAAYLA---EKKITDFSQVDKA 65 Query: 66 LSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 + + + S + T+ KI D S R LS ++SF YL + K + +R K + + Sbjct: 66 VMFDYVTLLRSGKITRCKISDSSFSRMLSTLRSFYHYLIRYKGVKVNPTRGLRAPKLNRT 125 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 +P L Q +TL D+ L+ RN AIL +Y CGLR+SE SLT + + Sbjct: 126 IPEFLTFDQMMTLFDSFDLNDPAAL-----RNRAILETMYACGLRVSEVCSLTLAELDLN 180 Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 + L + GKGDK RIVP +R + Y D L +F RG P+ P Sbjct: 181 ERILTVTGKGDKQRIVPFYKRLRTLLTRYLRDSRALYLKEEHGF-VFVSQRGAPITPRAV 239 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 Q + Q + GL H LRHSFATHLL NG DLR++Q +LGH LSTTQIYT+V Sbjct: 240 QLILAQAGQDAGLNQPLHPHILRHSFATHLLDNGVDLRTVQELLGHSSLSTTQIYTHVTV 299 Query: 304 KNGGDWMMEIYDQTHP 319 D + + D HP Sbjct: 300 ----DRLKQSVDAAHP 311 >gi|270308385|ref|YP_003330443.1| integrase/recombinase [Dehalococcoides sp. VS] gi|270154277|gb|ACZ62115.1| integrase/recombinase [Dehalococcoides sp. VS] Length = 302 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 94/302 (31%), Positives = 155/302 (51%), Gaps = 9/302 (2%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q++L L +E+G S+ T ++YE D RQ + F + I + + A++ Sbjct: 6 QSFLNYLMVEKGFSENTTEAYENDLRQMMTFADKEAAKFGKIPGWENFTRQTMLAYMLDL 65 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + ++ R ++ KSF ++ E+ N+ K LP A++ Q L+ Sbjct: 66 KERNYAITTVVRKMAAAKSFFNFMVAEGKLKENPTENISTPKVGKPLPDAISISQVRALL 125 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + + S E K R+ A+L LLY G+R++E ++L +I + +R GKG K R Sbjct: 126 NQPVKSGSSEAK----RDKAMLELLYASGMRVTELVNLNVLDIDLKEGFVRCFGKGRKER 181 Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 ++P+ P ++I EY ++ P + + LF RG L + ++ R GL Sbjct: 182 MIPIYPQAAQSIQEYLTEIRPNLVRAETEKALFLNRRGDRLTRQGLWQILKGYAREAGLD 241 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T HTLRHSFATH+LS G DLRS+Q +LGH +STTQIYT++ S++ + Y++ Sbjct: 242 DVVTPHTLRHSFATHMLSGGADLRSVQELLGHANISTTQIYTHLTSEH----IRRSYEKA 297 Query: 318 HP 319 HP Sbjct: 298 HP 299 >gi|256959059|ref|ZP_05563230.1| integrase [Enterococcus faecalis DS5] gi|257079090|ref|ZP_05573451.1| phage integrase [Enterococcus faecalis JH1] gi|294781639|ref|ZP_06746975.1| tyrosine recombinase XerC [Enterococcus faecalis PC1.1] gi|307270938|ref|ZP_07552221.1| tyrosine recombinase XerC [Enterococcus faecalis TX4248] gi|256949555|gb|EEU66187.1| integrase [Enterococcus faecalis DS5] gi|256987120|gb|EEU74422.1| phage integrase [Enterococcus faecalis JH1] gi|294451335|gb|EFG19801.1| tyrosine recombinase XerC [Enterococcus faecalis PC1.1] gi|306512436|gb|EFM81085.1| tyrosine recombinase XerC [Enterococcus faecalis TX4248] gi|315037059|gb|EFT48991.1| tyrosine recombinase XerC [Enterococcus faecalis TX0027] Length = 299 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 100/322 (31%), Positives = 161/322 (50%), Gaps = 28/322 (8%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 ME N PE+ + L+ +ERG S+ T ++Y+ D + F FL T Sbjct: 1 MEEKNWPELFARYLI-----------VERGYSEKTKKAYQEDIQHFFSFLK--TSGNDNY 47 Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 T+ L ++RA++S+ Q+ S+ R ++ ++SF ++L K + E+ + K Sbjct: 48 LTVEHL---DVRAYLSELYDQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKK 104 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 K LPR EK+ + L ++ + +D RN A+L +LYG G+R+SE +LT Sbjct: 105 KQLRLPRFFYEKEM-----DALFESAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVDA 159 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKP 237 + S L + GKG+K R VP + A+ +Y + L Q +F G+ Sbjct: 160 VDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENSRALLMTKYQKKHPYVFVNHHGEQ 219 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + P + + QL + L H LRH+FATHLL+NG D+R++Q +LGH LSTTQI Sbjct: 220 ITPTGIEYVLNQLIKKSSLNAEIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQI 279 Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319 Y +V ++ + + Y HP Sbjct: 280 YAHVTKES----LQKNYRTFHP 297 >gi|162447539|ref|YP_001620671.1| site-specific tyrosine recombinase [Acholeplasma laidlawii PG-8A] gi|161985646|gb|ABX81295.1| site-specific tyrosine recombinase [Acholeplasma laidlawii PG-8A] Length = 301 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 101/314 (32%), Positives = 168/314 (53%), Gaps = 17/314 (5%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 L+K+ +L N E GLSK T+ +Y D + + FL Y + ++ + + I Sbjct: 4 LIKDFSYYLNN---ELGLSKNTIDAYMRDLKDYESFLDKYHK----LKDVDNIQSKHIEG 56 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 ++ + + + +++ R L+ IKSF K+L K E + K +LP L+ + Sbjct: 57 YLKSIKKKGLSAKTISRKLTSIKSFHKFLLMEKEVDEDVTHKIARPKIEKTLPTVLSVDE 116 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 +++++ + ++ + RN A+L L+YG GLR+SE L++ ++I QS + + GK Sbjct: 117 VISILEVI-----DKSTTLGLRNMALLELIYGSGLRVSELLNIKLKDIHMQQSYVIVTGK 171 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 G K R+VP+ AI Y DL LF +GK L+ F + +++L Sbjct: 172 GSKERMVPISDMAIIAIRNYLVKARDDLIKEKTDYLFINNQGKTLSRVGFFKVLKKLASE 231 Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 L P + HTLRHSFATHLL NG DLRS+Q++LGH +STTQIYT+++ + + Sbjct: 232 ANLDPEKVSPHTLRHSFATHLLENGMDLRSLQNLLGHEDISTTQIYTHISQSR----LKQ 287 Query: 313 IYDQTHPSITQKDK 326 +Y++THP + +K Sbjct: 288 VYNKTHPRAKENNK 301 >gi|30022176|ref|NP_833807.1| site-specific tyrosine recombinase XerD [Bacillus cereus ATCC 14579] gi|206971233|ref|ZP_03232184.1| integrase/recombinase XerD [Bacillus cereus AH1134] gi|218235095|ref|YP_002368894.1| site-specific tyrosine recombinase XerD [Bacillus cereus B4264] gi|218899252|ref|YP_002447663.1| integrase/recombinase XerD [Bacillus cereus G9842] gi|228902600|ref|ZP_04066751.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 4222] gi|228909920|ref|ZP_04073741.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 200] gi|228941242|ref|ZP_04103795.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228954374|ref|ZP_04116400.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960355|ref|ZP_04122008.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pakistani str. T13001] gi|228974174|ref|ZP_04134744.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980765|ref|ZP_04141070.1| Tyrosine recombinase xerD [Bacillus thuringiensis Bt407] gi|229047783|ref|ZP_04193363.1| Tyrosine recombinase xerD [Bacillus cereus AH676] gi|229071595|ref|ZP_04204813.1| Tyrosine recombinase xerD [Bacillus cereus F65185] gi|229081347|ref|ZP_04213850.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-2] gi|229111564|ref|ZP_04241115.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-15] gi|229129370|ref|ZP_04258341.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-Cer4] gi|229146665|ref|ZP_04275032.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST24] gi|229152292|ref|ZP_04280485.1| Tyrosine recombinase xerD [Bacillus cereus m1550] gi|229180370|ref|ZP_04307713.1| Tyrosine recombinase xerD [Bacillus cereus 172560W] gi|296504585|ref|YP_003666285.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis BMB171] gi|29897733|gb|AAP11008.1| DNA integration/recombination/invertion protein [Bacillus cereus ATCC 14579] gi|206734005|gb|EDZ51176.1| integrase/recombinase XerD [Bacillus cereus AH1134] gi|218163052|gb|ACK63044.1| integrase/recombinase XerD [Bacillus cereus B4264] gi|218543889|gb|ACK96283.1| integrase/recombinase XerD [Bacillus cereus G9842] gi|228603117|gb|EEK60595.1| Tyrosine recombinase xerD [Bacillus cereus 172560W] gi|228631254|gb|EEK87890.1| Tyrosine recombinase xerD [Bacillus cereus m1550] gi|228636835|gb|EEK93298.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST24] gi|228653975|gb|EEL09842.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-Cer4] gi|228671946|gb|EEL27239.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-15] gi|228701969|gb|EEL54452.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-2] gi|228711531|gb|EEL63488.1| Tyrosine recombinase xerD [Bacillus cereus F65185] gi|228723575|gb|EEL74940.1| Tyrosine recombinase xerD [Bacillus cereus AH676] gi|228778934|gb|EEM27196.1| Tyrosine recombinase xerD [Bacillus thuringiensis Bt407] gi|228785514|gb|EEM33523.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228799379|gb|EEM46343.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pakistani str. T13001] gi|228805306|gb|EEM51899.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228818401|gb|EEM64473.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228849755|gb|EEM94588.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 200] gi|228857041|gb|EEN01550.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 4222] gi|296325637|gb|ADH08565.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis BMB171] gi|326941864|gb|AEA17760.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis serovar chinensis CT-43] Length = 296 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 95/304 (31%), Positives = 161/304 (52%), Gaps = 18/304 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++++ + +E+GL+K T+ SYE D + ++ +L + K T +++ I F+ Sbjct: 6 KDFIHYMVVEKGLAKNTVVSYERDLKSYVKYLQNVEQTK----TFHEVTRLHIVNFLQYL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + ++L R ++ I+SF ++L + + +++ + LP+ L+ V Sbjct: 62 KENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLS-------V 114 Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 D V LL T T R+ A+L LLY GLR+SE ++L +++ +R GKG+K Sbjct: 115 DEVEALLQTPKMTSAFGIRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNK 174 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RI+PL +AI +Y + +L + LF G L+ F + +++L + Sbjct: 175 ERIIPLGSLATEAIQKYIEKGRRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEAN 234 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V+ + ++Y Sbjct: 235 IEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKDVYK 290 Query: 316 QTHP 319 Q HP Sbjct: 291 QFHP 294 >gi|217967855|ref|YP_002353361.1| tyrosine recombinase XerD [Dictyoglomus turgidum DSM 6724] gi|217336954|gb|ACK42747.1| tyrosine recombinase XerD [Dictyoglomus turgidum DSM 6724] Length = 296 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 105/312 (33%), Positives = 164/312 (52%), Gaps = 25/312 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L L+ E+ +S T+ SY D F+IFL +EK+ I+ +++ + R +S Sbjct: 6 EDFLFYLKFEKNMSPNTIDSYRRDLEDFIIFLQ---KEKVNIKNLKREEWQ--RYLVSLY 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 KI +S+ R +S I+SFLK+L + + M K LP L+ K+ + Sbjct: 61 NRYKI--KSIARKISSIRSFLKFLLREGYINRNYSSFMIIPKIPMYLPEILDNKE----I 114 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 +N L + RN AIL Y G+R+SE ++L Q+I ++ +R GKGDK R Sbjct: 115 EN-FLKIPDPLSPLGIRNIAILETFYATGMRVSELVNLDVQSINLEEKYVRCFGKGDKER 173 Query: 199 IVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 I+PL + S++K +L P D + LF +G+ + I+ + L Sbjct: 174 IIPLGDYAVESLKKYLLVRDSFNPKD-----EKALFLNKKGERITRQGVWFIIKTYSKIL 228 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 GLP + HT RHSFATHLLSNG D+R +Q +LGH ++TTQIYT++ S + E+Y Sbjct: 229 GLPKKVSPHTFRHSFATHLLSNGADIRIVQELLGHSDVATTQIYTHIVSSK----LHEVY 284 Query: 315 DQTHPSITQKDK 326 + HP + DK Sbjct: 285 QKAHPLTRRNDK 296 >gi|149200277|ref|ZP_01877298.1| integrase/recombinase [Lentisphaera araneosa HTCC2155] gi|149136641|gb|EDM25073.1| integrase/recombinase [Lentisphaera araneosa HTCC2155] Length = 318 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 97/305 (31%), Positives = 165/305 (54%), Gaps = 17/305 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLSYTEIRAFISKRRTQK 82 L+ E+ S T ++Y D +F+ + +E I Q++ +Q+ + +I + K Sbjct: 17 LKTEKNFSLHTQKAYFFDIVEFIT--QTWGDEAIEAQSLAWKQIDKNAAKGYIFSLQESK 74 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 I +L R S ++S + ++ ++ + + +++ KK SLP L+ + TL+ + Sbjct: 75 ISKNTLLRKCSSLRSLYNFFQREELQSTNPFQDIKAAKKDKSLPLILSREDISTLLSSPA 134 Query: 143 LHTSHE----TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + + + ++ +R++AIL ++Y GLRI EAL + I ++STL+I GKG K R Sbjct: 135 PYWAQKKGKNNDFMASRDAAILEIIYSGGLRIQEALDINFDQINLEESTLKIFGKGKKQR 194 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLN---IQLPLFRGIRG-KPLNPGVFQRYIRQLRRYL 254 L ++A+ +Y+ C + LN P+F ++ K L+ QR ++ + Sbjct: 195 TAYLGNPAKQALEQYF-ACRKNAELNWTSANDPVFINLKDLKRLSARSIQRNLKAYLQSC 253 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 LP T H LRHSFATHLL G DLRS+Q +LGH LSTTQIYT++++ D +++ Y Sbjct: 254 QLPPDITPHKLRHSFATHLLDAGADLRSVQELLGHENLSTTQIYTHIST----DRLLQAY 309 Query: 315 DQTHP 319 DQ HP Sbjct: 310 DQAHP 314 >gi|169795024|ref|YP_001712817.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE] gi|301345401|ref|ZP_07226142.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB056] gi|301511585|ref|ZP_07236822.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB058] gi|332854278|ref|ZP_08435278.1| putative tyrosine recombinase XerC [Acinetobacter baumannii 6013150] gi|332865654|ref|ZP_08436480.1| putative tyrosine recombinase XerC [Acinetobacter baumannii 6013113] gi|169147951|emb|CAM85814.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE] gi|332728094|gb|EGJ59483.1| putative tyrosine recombinase XerC [Acinetobacter baumannii 6013150] gi|332735175|gb|EGJ66255.1| putative tyrosine recombinase XerC [Acinetobacter baumannii 6013113] Length = 308 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 104/313 (33%), Positives = 174/313 (55%), Gaps = 30/313 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL+ +I+ S+ T+ +YE D R FL F +K+ + R + +++R ++++R Sbjct: 15 WLKERKIQ-NQSEHTITAYERDVRSFLEFCEL---KKVDL---RNVEASDLREYLAQRVE 67 Query: 81 Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q ++ S++R L+ I+ F+K+ ++ K E N + LK+ PR L + V+ Sbjct: 68 QDQLSSSSMQRHLTSIRQFMKWAEQGKYL-EINPTDDFKLKRQ---PRPLPGMIDIETVN 123 Query: 140 NVLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 +L E K ID R+ A+L LLY GLR++E LT ++I ++ +RI GKG+ Sbjct: 124 QILDQPMPE-KPIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGN 182 Query: 196 KIRIVPLLPSVRKAILEY---YDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 K RIVP ++++L + Y++ FD N ++ F RG L P ++ ++ Sbjct: 183 KTRIVPFGKKAKESLLNWLKIYNIWKGHFDQNASV----FISQRGGALTPRQIEKRVKLQ 238 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 + G+ + H LRH FA+H+LS+ GDLRS+Q +LGH LSTTQIYT+++ D + Sbjct: 239 AQRAGVNVDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDF----DHL 294 Query: 311 MEIYDQTHPSITQ 323 ++YDQ HP T+ Sbjct: 295 AQVYDQAHPRATK 307 >gi|229086660|ref|ZP_04218828.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-44] gi|228696607|gb|EEL49424.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-44] Length = 296 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 92/302 (30%), Positives = 160/302 (52%), Gaps = 14/302 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++++ + +E+GL+K T+ SYE D + ++ +L + I+T +++ I F+ Sbjct: 6 KDFIHYMIVEKGLAKNTVVSYERDLKSYVKYLQNVEQ----IKTFHEVTRIHIVNFLQYL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + ++L R ++ I+SF ++L + ++ +++ + LP+ L+ + Sbjct: 62 KENGKSSKTLARHIASIRSFHQFLLRERVVEHDPSVHIETPQGERKLPKVLSVGEV---- 117 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL T T R+ A+L LLY GLR+SE ++L +++ +R GKG+K R Sbjct: 118 -EALLQTPKATSAFGIRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKER 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 I+PL +AI Y + +L + LF G L+ F + +++L + + Sbjct: 177 IIPLGSLATEAIQRYIEKGRRELVGKKTVDALFLNHHGNRLSRQGFWKILKRLAKEANIE 236 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V+ + ++Y Q Sbjct: 237 KELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKDVYKQF 292 Query: 318 HP 319 HP Sbjct: 293 HP 294 >gi|256827378|ref|YP_003151337.1| tyrosine recombinase XerD [Cryptobacterium curtum DSM 15641] gi|256583521|gb|ACU94655.1| tyrosine recombinase XerD [Cryptobacterium curtum DSM 15641] Length = 302 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 105/306 (34%), Positives = 155/306 (50%), Gaps = 18/306 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ERG + T+++YE D +++ FLA I + ++ I AF S Sbjct: 6 REFLSYLRVERGAATSTVRAYEHDLTRYVEFLASLQPAGTAI-SWSHITRDNIVAFESSL 64 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + Q + S R+LS IKSF ++L+ +++ + KK LP L+ + Sbjct: 65 KDQGLALTSRARALSSIKSFHRFLEVDGRCSKNPASLISLPKKPQRLPDVLS-------I 117 Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 D V LL +S + +D R+ A+L +LYGCGLR SE L + D L ++GKGDK Sbjct: 118 DTVGRLLDSSIGDRPVDLRDRALLEVLYGCGLRASELCGLDVDRVNTDDGVLLVRGKGDK 177 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 RIVPL + KA+ +Y + L + +F RG L R +R Sbjct: 178 ERIVPLAGTAEKALCDYLEHGRPVLARAGRTSTMAVFLNARGSRLTRQSVHRIVRNAGLR 237 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 +G+ + HTLRHS ATHLL G DLR IQ +LGH ++TTQIYT+V + + E Sbjct: 238 VGID-NLHPHTLRHSCATHLLEGGADLRIIQDMLGHSDIATTQIYTHVQQTH----LQEE 292 Query: 314 YDQTHP 319 Y HP Sbjct: 293 YRSAHP 298 >gi|297620964|ref|YP_003709101.1| Tyrosine recombinase XerD [Waddlia chondrophila WSU 86-1044] gi|297376265|gb|ADI38095.1| Tyrosine recombinase XerD [Waddlia chondrophila WSU 86-1044] Length = 292 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 95/306 (31%), Positives = 165/306 (53%), Gaps = 16/306 (5%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 ++++ ++L L E+GL++ T+++Y+ D F+ L E IQ ++ EI Sbjct: 1 MIEQLDDFLIYLGSEKGLTQNTIEAYQRDVFSFISHL-----ESKGIQGFNEVGQEEIVD 55 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 F+S +++++ ++ R L IK F ++LK+ + + L +++ K +P L ++ Sbjct: 56 FLSYLKSRQLAVSTISRHLIAIKVFFRFLKREGVVENNVSLYLQSPKGWQIIPDVLTMEE 115 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L++ TS R+ AIL LLY CGLR+SE + +++ ++ T+R+ GK Sbjct: 116 MEILLNQPDPETSE-----GVRDRAILELLYACGLRVSELCQMKIEDL--EEETVRVFGK 168 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 G K RIVPL +AI Y +++ LF RGKP+N + + I++ Sbjct: 169 GRKERIVPLGSHASQAINRYLAKRADCKSIDEAGYLFVNKRGKPMNRVLIWKMIKEYGAQ 228 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ S + HT+RHSFATHLL NG +LR IQ +LGH +S+T YT+++ + + Sbjct: 229 AGITKSLSPHTMRHSFATHLLDNGAELRVIQEMLGHASISSTDRYTHISRIH----LQNA 284 Query: 314 YDQTHP 319 +D+ HP Sbjct: 285 FDRYHP 290 >gi|323340732|ref|ZP_08080984.1| integrase/recombinase XerD [Lactobacillus ruminis ATCC 25644] gi|323091855|gb|EFZ34475.1| integrase/recombinase XerD [Lactobacillus ruminis ATCC 25644] Length = 300 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 98/310 (31%), Positives = 170/310 (54%), Gaps = 17/310 (5%) Query: 12 FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71 EL + ++L L+ ERGLS+ T+ SY D +QF+ +L +E KIT + + I Sbjct: 4 IELQRILNDYLHYLKAERGLSENTVSSYGLDLQQFINYL---SEHKIT--DLNDVDKQVI 58 Query: 72 RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131 ++ + + S+ R ++ ++ F + +K+ + + ++++ K LP L+ Sbjct: 59 VDYLDYLMNKGKANASIIRCVTSLRKFFQSMKQDEKIQDDPMISIETPKGEKHLPEVLSI 118 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 ++ +LL+ ++ + RN AIL L+Y GLR+SE ++L +++ D ++ Sbjct: 119 EEV-----EMLLNAPDTSQTLGIRNRAILELMYATGLRVSEVVNLKLEDLHLDVGIIQTM 173 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLN-PGVFQRYIRQ 249 GKG K RIVP+ I Y + +L N + P LF G+ L G+++ + Sbjct: 174 GKGRKERIVPIGDEAIVWINNYLNDARPELCKNKRSPFLFVNFHGERLTRQGIWKNLKNE 233 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 +++ G+ + T HTLRHSFATH+L NG DLR +Q +LGH +STTQIYT+++ K Sbjct: 234 VKK-AGISKNVTPHTLRHSFATHILENGADLRIVQELLGHSDISTTQIYTHISKKR---- 288 Query: 310 MMEIYDQTHP 319 + +IYD++HP Sbjct: 289 LSKIYDESHP 298 >gi|229192302|ref|ZP_04319267.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 10876] gi|228591252|gb|EEK49106.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 10876] Length = 296 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 95/304 (31%), Positives = 161/304 (52%), Gaps = 18/304 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++++ + +E+GL+K T+ SYE D + ++ +L + K T +++ I F+ Sbjct: 6 KDFIHYMVVEKGLAKNTVVSYERDLKSYVKYLQNVEQTK----TFHEVTRLHIVNFLQYL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + ++L R ++ I+SF ++L + + +++ + LP+ L+ V Sbjct: 62 KENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLS-------V 114 Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 D V LL T T R+ A+L LLY GLR+SE ++L +++ +R GKG+K Sbjct: 115 DEVEALLQTPKMTSAFGIRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNK 174 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RI+PL +AI +Y + +L + LF G L+ F + +++L + Sbjct: 175 ERIIPLGSLATEAIQKYIEKGRRELIGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEAN 234 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V+ + ++Y Sbjct: 235 IEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKDVYK 290 Query: 316 QTHP 319 Q HP Sbjct: 291 QFHP 294 >gi|319764396|ref|YP_004128333.1| tyrosine recombinase xerc [Alicycliphilus denitrificans BC] gi|330826617|ref|YP_004389920.1| tyrosine recombinase XerC [Alicycliphilus denitrificans K601] gi|317118957|gb|ADV01446.1| tyrosine recombinase XerC [Alicycliphilus denitrificans BC] gi|329311989|gb|AEB86404.1| tyrosine recombinase XerC [Alicycliphilus denitrificans K601] Length = 320 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 95/325 (29%), Positives = 159/325 (48%), Gaps = 27/325 (8%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L E +L+++ +E+ L+ TL Y D ++ F A + +R L+ +R Sbjct: 10 QLPPEALQYLEHVRVEKRLAARTLTLYTLDLQRLAAFAA-----DAGLPLLR-LTGAHVR 63 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F+++ R + LSG + F + ++ + + + ++R K LP+AL Sbjct: 64 RFVAQMHAAGRSGRGIALILSGWRGFYAWAARQGLVPHNPVQDVRAPKAPKPLPKALPVD 123 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNIMDDQS---- 186 +A+ L ++ S W++AR++AI+ LLYGCGLR+ E L + P Q Sbjct: 124 EAVRLAEH---EESGADPWLEARDAAIVELLYGCGLRVGELVGLDVAPSPAAHQQGRGWI 180 Query: 187 -----TLRIQGKGDKIRIVPLLPSVRKAILEYYDL--CPFDLNLNIQLPLFRGIRGKPLN 239 + GKG K R VP+ + +A+ + + PF LF G RG L+ Sbjct: 181 DLQAGEAHVFGKGAKRRSVPVGRAAAEALRGWLAVRAQPFG-GAAADAALFVGRRGARLS 239 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 +RQ + GL H LRHSFA+HLL + GDLR++Q +LGH ++TTQ+YT Sbjct: 240 AQSVWLRLRQRSQRAGLTTPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYT 299 Query: 300 NVNSKNGGDWMMEIYDQTHPSITQK 324 ++ ++ + +YDQ HP +K Sbjct: 300 RLDFQH----LARVYDQAHPRARRK 320 >gi|225174860|ref|ZP_03728857.1| tyrosine recombinase XerD [Dethiobacter alkaliphilus AHT 1] gi|225169500|gb|EEG78297.1| tyrosine recombinase XerD [Dethiobacter alkaliphilus AHT 1] Length = 295 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 92/302 (30%), Positives = 158/302 (52%), Gaps = 15/302 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++++ L +E+GL+K TL+SY D R + +L ++ I ++ + S + I ++ Sbjct: 6 RDFIHYLSVEKGLAKNTLESYNRDLRTYYTYL-----KQNGITSLEETSRSNIVGYLLSL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + +L R+++ I+SF YL + + E+ + + K LPR L ++ Sbjct: 61 QNMGKATSTLSRNMASIRSFYNYLFQERHLVENPAAELESPKLEKKLPRVLTPQEM---- 116 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 ++LL +T+ R+ A+L ++Y G+R+SE +SL ++ D +R GKG K R Sbjct: 117 -DLLLEQPDQTQVTGIRDKAMLEVIYATGIRVSELMSLDIGDVNLDAGFIRCLGKGSKER 175 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 I+PL + + Y + P + + LF G L F + +++ G+ Sbjct: 176 IIPLGSVAIRNVGRYLNEGRPKLVRQAGEASLFVNQHGNRLTRQGFWKILKKYATRAGIT 235 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T HT+RHSFATHLL NG DLRS+Q +LGH +STTQIYT V + ++Y+++ Sbjct: 236 KEITPHTMRHSFATHLLENGADLRSVQEMLGHADISTTQIYTQVTKHK----LRDVYEKS 291 Query: 318 HP 319 HP Sbjct: 292 HP 293 >gi|229174766|ref|ZP_04302290.1| Tyrosine recombinase xerD [Bacillus cereus MM3] gi|228608756|gb|EEK66054.1| Tyrosine recombinase xerD [Bacillus cereus MM3] Length = 296 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 93/304 (30%), Positives = 161/304 (52%), Gaps = 18/304 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++++ + +E+GL+K T+ SYE D + ++ +L + K + +++ I F+ Sbjct: 6 KDFIHYMVVEKGLAKNTVVSYERDLKSYVKYLQNVEQAK----SFHEVTRLHIVNFLQHL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + ++L R ++ I+SF ++L + + +++ + LP+ L+ + Sbjct: 62 KENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLS-------I 114 Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 D V LL T T R+ A+L LLY GLR+SE ++L +++ +R GKG+K Sbjct: 115 DEVEALLQTPKMTSAFGVRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNK 174 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RI+PL +AI +Y + +L + LF G L+ F + +++L + Sbjct: 175 ERIIPLGSLATEAIQKYIEKGRRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEAN 234 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V+ + ++Y Sbjct: 235 IEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKAR----LKDVYK 290 Query: 316 QTHP 319 Q HP Sbjct: 291 QFHP 294 >gi|315282996|ref|ZP_07871279.1| tyrosine recombinase XerD [Listeria marthii FSL S4-120] gi|313613367|gb|EFR87228.1| tyrosine recombinase XerD [Listeria marthii FSL S4-120] Length = 297 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 96/309 (31%), Positives = 165/309 (53%), Gaps = 27/309 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L L +ERGLS T+++Y+ D F+ ++ T + +T I L ++I F++ Sbjct: 6 EDFLHFLIVERGLSANTIKAYQRDLHYFVSYME--TSKNLTDPNI--LERSDIVGFMAFA 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + RS+ R ++ ++SF YL + ++ + K++ SLP+ LN + Sbjct: 62 RQEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQSLPKVLN-------L 114 Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 D+V LL +S + + R+ A++ +LY GLR++E + L ++ ++ GKGDK Sbjct: 115 DDVEKLLSSSDTSTPLGLRDQAMMEILYATGLRVTELVRLKMDDLHLHMGFIQTIGKGDK 174 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI------RGKPLNPGVFQRYIRQL 250 RI+PL + + +Y + + ++ P +R G+ L F + ++ + Sbjct: 175 ERIIPLGKTATTVLEQYLE----EARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGI 230 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 + G+ T HTLRHSFATHLL NG DLRS+Q +LGH +STTQIYT+V + Sbjct: 231 AKESGIEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLR----L 286 Query: 311 MEIYDQTHP 319 ++Y Q HP Sbjct: 287 KDVYKQFHP 295 >gi|256965045|ref|ZP_05569216.1| phage integrase [Enterococcus faecalis HIP11704] gi|307273143|ref|ZP_07554389.1| tyrosine recombinase XerC [Enterococcus faecalis TX0855] gi|256955541|gb|EEU72173.1| phage integrase [Enterococcus faecalis HIP11704] gi|306510128|gb|EFM79152.1| tyrosine recombinase XerC [Enterococcus faecalis TX0855] Length = 299 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 100/322 (31%), Positives = 161/322 (50%), Gaps = 28/322 (8%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 ME N PE+ + L+ +ERG S+ T ++Y+ D + F FL T Sbjct: 1 MEEKNWPELFARYLI-----------VERGYSEKTKKAYQEDIQHFFSFLK--TSGNDNY 47 Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 T+ L ++RA++S+ Q+ S+ R ++ ++SF ++L K + E+ + K Sbjct: 48 LTVEHL---DVRAYLSELYDQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKK 104 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 K LPR EK+ + L ++ + +D RN A+L +LYG G+R+SE +LT Sbjct: 105 KELRLPRFFYEKEM-----DALFESAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVDA 159 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKP 237 + S L + GKG+K R VP + A+ +Y + L Q +F G+ Sbjct: 160 VDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGEQ 219 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + P + + QL + L H LRH+FATHLL+NG D+R++Q +LGH LSTTQI Sbjct: 220 ITPTGIEYVLNQLIKKSSLNAEIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQI 279 Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319 Y +V ++ + + Y HP Sbjct: 280 YAHVTKES----LQKNYRTFHP 297 >gi|257085103|ref|ZP_05579464.1| phage integrase [Enterococcus faecalis Fly1] gi|256993133|gb|EEU80435.1| phage integrase [Enterococcus faecalis Fly1] gi|315168954|gb|EFU12971.1| tyrosine recombinase XerC [Enterococcus faecalis TX1341] Length = 299 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 100/322 (31%), Positives = 161/322 (50%), Gaps = 28/322 (8%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 ME N PE+ + L+ +ERG S+ T ++Y+ D + F FL T Sbjct: 1 MEEKNWPELFARYLI-----------VERGYSEKTKKAYQEDIQHFFSFLK--TSGNDNY 47 Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 T+ L ++RA++S+ Q+ S+ R ++ ++SF ++L K + E+ + K Sbjct: 48 LTVEHL---DVRAYLSELYDQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKK 104 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 K LPR EK+ + L ++ + +D RN A+L +LYG G+R+SE +LT Sbjct: 105 KQLRLPRFFYEKEM-----DALFESAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVDA 159 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKP 237 + S L + GKG+K R VP + A+ +Y + L Q +F G+ Sbjct: 160 VDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGRALLMTKYQKKHPYIFVNHHGEQ 219 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + P + + QL + L H LRH+FATHLL+NG D+R++Q +LGH LSTTQI Sbjct: 220 ITPTGIEYVLNQLIKKSSLNAEIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQI 279 Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319 Y +V ++ + + Y HP Sbjct: 280 YAHVTKES----LQKNYRTFHP 297 >gi|213158313|ref|YP_002320364.1| tyrosine recombinase XerC [Acinetobacter baumannii AB0057] gi|215482572|ref|YP_002324764.1| Tyrosine recombinase xerC [Acinetobacter baumannii AB307-0294] gi|301594795|ref|ZP_07239803.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB059] gi|213057473|gb|ACJ42375.1| tyrosine recombinase XerC [Acinetobacter baumannii AB0057] gi|213986400|gb|ACJ56699.1| Tyrosine recombinase xerC [Acinetobacter baumannii AB307-0294] Length = 304 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 104/313 (33%), Positives = 174/313 (55%), Gaps = 30/313 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL+ +I+ S+ T+ +YE D R FL F +K+ + R + +++R ++++R Sbjct: 11 WLKERKIQ-NQSEHTITAYERDVRSFLEFCEL---KKVDL---RNVEASDLREYLAQRVE 63 Query: 81 Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q ++ S++R L+ I+ F+K+ ++ K E N + LK+ PR L + V+ Sbjct: 64 QDQLSSSSMQRHLTSIRQFMKWAEQGKYL-EINPTDDFKLKRQ---PRPLPGMIDIETVN 119 Query: 140 NVLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 +L E K ID R+ A+L LLY GLR++E LT ++I ++ +RI GKG+ Sbjct: 120 QILDQPMPE-KPIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGN 178 Query: 196 KIRIVPLLPSVRKAILEY---YDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 K RIVP ++++L + Y++ FD N ++ F RG L P ++ ++ Sbjct: 179 KTRIVPFGKKAKESLLNWLKIYNIWKGHFDQNASV----FISQRGGALTPRQIEKRVKLQ 234 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 + G+ + H LRH FA+H+LS+ GDLRS+Q +LGH LSTTQIYT+++ D + Sbjct: 235 AQRAGVNVDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDF----DHL 290 Query: 311 MEIYDQTHPSITQ 323 ++YDQ HP T+ Sbjct: 291 AQVYDQAHPRATK 303 >gi|116873397|ref|YP_850178.1| integrase/recombinase [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742275|emb|CAK21399.1| integrase/recombinase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 297 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 96/309 (31%), Positives = 166/309 (53%), Gaps = 27/309 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L L +E+GLS T+++Y+ D R F+ ++ T + +T I L ++I F++ Sbjct: 6 EDFLHFLIVEKGLSANTIKAYQRDLRYFVSYME--TSKNLTDPNI--LERSDIVGFMAFA 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + RS+ R ++ ++SF YL + ++ + K++ SLP+ LN + Sbjct: 62 RQEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQSLPKVLN-------L 114 Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 D+V LL +S + + R+ A++ +LY GLR++E + L ++ ++ GKGDK Sbjct: 115 DDVEKLLSSSDISTPLGLRDQAMMEILYATGLRVTELVRLKMDDLHLHMGFIQTIGKGDK 174 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI------RGKPLNPGVFQRYIRQL 250 RI+PL + + +Y + + ++ P +R G+ L F + ++ + Sbjct: 175 ERIIPLGKTATTVLEQYLE----EARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGI 230 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 + G+ T HTLRHSFATHLL NG DLRS+Q +LGH +STTQIYT+V + Sbjct: 231 AKESGIEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLR----L 286 Query: 311 MEIYDQTHP 319 ++Y Q HP Sbjct: 287 KDVYKQFHP 295 >gi|194333561|ref|YP_002015421.1| tyrosine recombinase XerD [Prosthecochloris aestuarii DSM 271] gi|194311379|gb|ACF45774.1| tyrosine recombinase XerD [Prosthecochloris aestuarii DSM 271] Length = 304 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 98/315 (31%), Positives = 156/315 (49%), Gaps = 21/315 (6%) Query: 10 VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69 + F + ++L L +ER S T QSY D ++L+++ +++ +++I+ Sbjct: 4 LEFPYIDHLDSFLNYLTLERNFSVNTRQSYTNDLSRYLLYM---QQQQKAVESIK---LD 57 Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 +IR FI + RS+ R++S I+S K+L KI + N+R K +LP+ L Sbjct: 58 DIREFIHTLSATGMEARSIARNISAIRSLHKFLVAEKIVQVNETNNLRQPKPLKALPKVL 117 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 +A L+D L S + R+ AIL LY G+R+SE + + N D+ +R Sbjct: 118 THDEAFKLLDAPLAKDSSSRYAL--RDKAILEFLYATGVRVSELVDVCQNNCFLDEGFIR 175 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQ 244 I GKG K R+VP+ S I Y D +L + I LF RG L Sbjct: 176 IFGKGSKERLVPIGSSAVSWIKRYLD----ELRMRIANDRSADFLFLNARGGRLTRMTVY 231 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + G+ + + HTLRH+FATHLL G DLR++Q +LGH + TQIYT+++ Sbjct: 232 NIVTHYSLIAGISKTISPHTLRHTFATHLLEGGADLRAVQEMLGHSSILATQIYTHIDRS 291 Query: 305 NGGDWMMEIYDQTHP 319 ++ E++ HP Sbjct: 292 ----FLCEVHKSFHP 302 >gi|257422531|ref|ZP_05599521.1| recombinase [Enterococcus faecalis X98] gi|257164355|gb|EEU94315.1| recombinase [Enterococcus faecalis X98] gi|315155672|gb|EFT99688.1| tyrosine recombinase XerC [Enterococcus faecalis TX0043] Length = 299 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 100/322 (31%), Positives = 161/322 (50%), Gaps = 28/322 (8%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 ME N PE+ + L+ +ERG S+ T ++Y+ D + F FL T Sbjct: 1 MEEKNWPELFARYLI-----------VERGYSEKTKKAYQEDIQHFFSFLK--TSGNDNY 47 Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 T+ L ++RA++S+ Q+ S+ R ++ ++SF ++L K + E+ + K Sbjct: 48 LTVEHL---DVRAYLSELYDQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKK 104 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 K LPR EK+ + L ++ + +D RN A+L +LYG G+R+SE +LT Sbjct: 105 KQLRLPRFFYEKEM-----DALFESAQGEQPLDLRNKALLEVLYGTGIRVSECANLTVDA 159 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKP 237 + S L + GKG+K R VP + A+ +Y + L Q +F G+ Sbjct: 160 VDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGEQ 219 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + P + + QL + L H LRH+FATHLL+NG D+R++Q +LGH LSTTQI Sbjct: 220 ITPTGIEYVLNQLIKKSSLNAEIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQI 279 Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319 Y +V ++ + + Y HP Sbjct: 280 YAHVTKES----LQKNYRTFHP 297 >gi|323140540|ref|ZP_08075467.1| tyrosine recombinase XerC [Phascolarctobacterium sp. YIT 12067] gi|322414992|gb|EFY05784.1| tyrosine recombinase XerC [Phascolarctobacterium sp. YIT 12067] Length = 302 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 98/319 (30%), Positives = 165/319 (51%), Gaps = 27/319 (8%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 NN PE +L LE+E+ S+ T++SY+ D F F+ ++ Q Sbjct: 6 NNYPE-----------RFLTYLEVEKNCSQHTIESYQKDLAAFAEFMLRRNKQNFFWQ-- 52 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 Q ++R ++++ ++ R++ R +S ++SF KYL + + S + +R K Sbjct: 53 -QTGPLDVRGYLAELNEKQYARRTIARRISALRSFFKYLVREAVIEYSPLTKVRTPKLEK 111 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 LP L+E + N LL ++K + R+ A+L +LY G R+SE + LT + + Sbjct: 112 KLPAFLDEIEI-----NELLAMPDKSKVLGVRDQAVLEMLYATGCRVSELVGLTLERVDL 166 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNP 240 + + GKG+K R++P+ + A+ YY + L L Q +F RG L Sbjct: 167 SNRFVLLLGKGNKERVMPVGHTCCAALSTYYRVRQ-QLMLQYQQKHDFIFVNNRGGRLTD 225 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 +R + + L + + + HT+RHSFATHLL +G DLRS+Q +LGH LSTTQIYT+ Sbjct: 226 RSVRRILEKYINMLAIHKNVSPHTIRHSFATHLLEHGADLRSVQELLGHANLSTTQIYTH 285 Query: 301 VNSKNGGDWMMEIYDQTHP 319 V++++ + +Y + HP Sbjct: 286 VSNEH----VTNVYKKNHP 300 >gi|307289187|ref|ZP_07569143.1| tyrosine recombinase XerC [Enterococcus faecalis TX0109] gi|306499896|gb|EFM69257.1| tyrosine recombinase XerC [Enterococcus faecalis TX0109] gi|315164096|gb|EFU08113.1| tyrosine recombinase XerC [Enterococcus faecalis TX1302] Length = 299 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 100/322 (31%), Positives = 161/322 (50%), Gaps = 28/322 (8%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 ME N PE+ + L+ +ERG S+ T ++Y+ D + F FL T Sbjct: 1 MEEKNWPELFARYLI-----------VERGYSEKTKKAYQEDIQHFFSFLK--TSGSDNY 47 Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 T+ L ++RA++S+ Q+ S+ R ++ ++SF ++L K + E+ + K Sbjct: 48 LTVEHL---DVRAYLSELYDQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKK 104 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 K LPR EK+ + L ++ + +D RN A+L +LYG G+R+SE +LT Sbjct: 105 KQLRLPRFFYEKEM-----DALFESAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVDA 159 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKP 237 + S L + GKG+K R VP + A+ +Y + L Q +F G+ Sbjct: 160 VDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGEQ 219 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + P + + QL + L H LRH+FATHLL+NG D+R++Q +LGH LSTTQI Sbjct: 220 ITPTGIEYVLNQLIKKSSLNAEIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQI 279 Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319 Y +V ++ + + Y HP Sbjct: 280 YAHVTKES----LQKNYRTFHP 297 >gi|29376202|ref|NP_815356.1| phage integrase family site specific recombinase [Enterococcus faecalis V583] gi|227518833|ref|ZP_03948882.1| site-specific recombinase XerD [Enterococcus faecalis TX0104] gi|227553450|ref|ZP_03983499.1| site-specific recombinase XerD [Enterococcus faecalis HH22] gi|229549931|ref|ZP_04438656.1| site-specific recombinase XerD [Enterococcus faecalis ATCC 29200] gi|255972714|ref|ZP_05423300.1| phage integrase [Enterococcus faecalis T1] gi|256619143|ref|ZP_05475989.1| integrase [Enterococcus faecalis ATCC 4200] gi|256762579|ref|ZP_05503159.1| phage integrase [Enterococcus faecalis T3] gi|256853205|ref|ZP_05558575.1| site-specific recombinase [Enterococcus faecalis T8] gi|256961848|ref|ZP_05566019.1| phage integrase [Enterococcus faecalis Merz96] gi|257082471|ref|ZP_05576832.1| phage integrase [Enterococcus faecalis E1Sol] gi|257086664|ref|ZP_05581025.1| phage integrase [Enterococcus faecalis D6] gi|257416173|ref|ZP_05593167.1| integrase [Enterococcus faecalis AR01/DG] gi|257419375|ref|ZP_05596369.1| phage integrase [Enterococcus faecalis T11] gi|293382913|ref|ZP_06628831.1| tyrosine recombinase XerC [Enterococcus faecalis R712] gi|293389598|ref|ZP_06634055.1| tyrosine recombinase XerC [Enterococcus faecalis S613] gi|300860343|ref|ZP_07106430.1| tyrosine recombinase XerC [Enterococcus faecalis TUSoD Ef11] gi|307274878|ref|ZP_07556041.1| tyrosine recombinase XerC [Enterococcus faecalis TX2134] gi|307291916|ref|ZP_07571785.1| tyrosine recombinase XerC [Enterococcus faecalis TX0411] gi|312907617|ref|ZP_07766608.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 512] gi|312910234|ref|ZP_07769081.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 516] gi|29343665|gb|AAO81426.1| site-specific recombinase, phage integrase family [Enterococcus faecalis V583] gi|227073746|gb|EEI11709.1| site-specific recombinase XerD [Enterococcus faecalis TX0104] gi|227177426|gb|EEI58398.1| site-specific recombinase XerD [Enterococcus faecalis HH22] gi|229304944|gb|EEN70940.1| site-specific recombinase XerD [Enterococcus faecalis ATCC 29200] gi|255963732|gb|EET96208.1| phage integrase [Enterococcus faecalis T1] gi|256598670|gb|EEU17846.1| integrase [Enterococcus faecalis ATCC 4200] gi|256683830|gb|EEU23525.1| phage integrase [Enterococcus faecalis T3] gi|256711664|gb|EEU26702.1| site-specific recombinase [Enterococcus faecalis T8] gi|256952344|gb|EEU68976.1| phage integrase [Enterococcus faecalis Merz96] gi|256990501|gb|EEU77803.1| phage integrase [Enterococcus faecalis E1Sol] gi|256994694|gb|EEU81996.1| phage integrase [Enterococcus faecalis D6] gi|257158001|gb|EEU87961.1| integrase [Enterococcus faecalis ARO1/DG] gi|257161203|gb|EEU91163.1| phage integrase [Enterococcus faecalis T11] gi|291079578|gb|EFE16942.1| tyrosine recombinase XerC [Enterococcus faecalis R712] gi|291081215|gb|EFE18178.1| tyrosine recombinase XerC [Enterococcus faecalis S613] gi|295113045|emb|CBL31682.1| tyrosine recombinase XerC subunit [Enterococcus sp. 7L76] gi|300849382|gb|EFK77132.1| tyrosine recombinase XerC [Enterococcus faecalis TUSoD Ef11] gi|306496914|gb|EFM66462.1| tyrosine recombinase XerC [Enterococcus faecalis TX0411] gi|306508326|gb|EFM77433.1| tyrosine recombinase XerC [Enterococcus faecalis TX2134] gi|310626645|gb|EFQ09928.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 512] gi|311289507|gb|EFQ68063.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 516] gi|315027186|gb|EFT39118.1| tyrosine recombinase XerC [Enterococcus faecalis TX2137] gi|315029303|gb|EFT41235.1| tyrosine recombinase XerC [Enterococcus faecalis TX4000] gi|315034051|gb|EFT45983.1| tyrosine recombinase XerC [Enterococcus faecalis TX0017] gi|315145127|gb|EFT89143.1| tyrosine recombinase XerC [Enterococcus faecalis TX2141] gi|315147344|gb|EFT91360.1| tyrosine recombinase XerC [Enterococcus faecalis TX4244] gi|315150456|gb|EFT94472.1| tyrosine recombinase XerC [Enterococcus faecalis TX0012] gi|315158157|gb|EFU02174.1| tyrosine recombinase XerC [Enterococcus faecalis TX0312] gi|315160539|gb|EFU04556.1| tyrosine recombinase XerC [Enterococcus faecalis TX0645] gi|315169812|gb|EFU13829.1| tyrosine recombinase XerC [Enterococcus faecalis TX1342] gi|315172224|gb|EFU16241.1| tyrosine recombinase XerC [Enterococcus faecalis TX1346] gi|315575784|gb|EFU87975.1| tyrosine recombinase XerC [Enterococcus faecalis TX0309B] gi|315580436|gb|EFU92627.1| tyrosine recombinase XerC [Enterococcus faecalis TX0309A] gi|323480809|gb|ADX80248.1| tyrosine recombinase XerC [Enterococcus faecalis 62] gi|327535213|gb|AEA94047.1| tyrosine recombinase XerC [Enterococcus faecalis OG1RF] Length = 299 Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 100/322 (31%), Positives = 161/322 (50%), Gaps = 28/322 (8%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 ME N PE+ + L+ +ERG S+ T ++Y+ D + F FL T Sbjct: 1 MEEKNWPELFARYLI-----------VERGYSEKTKKAYQEDIQHFFSFLK--TSGNDNY 47 Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 T+ L ++RA++S+ Q+ S+ R ++ ++SF ++L K + E+ + K Sbjct: 48 LTVEHL---DVRAYLSELYDQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKK 104 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 K LPR EK+ + L ++ + +D RN A+L +LYG G+R+SE +LT Sbjct: 105 KQLRLPRFFYEKEM-----DALFESAQGEQPLDLRNQALLEVLYGTGIRVSECANLTVDA 159 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKP 237 + S L + GKG+K R VP + A+ +Y + L Q +F G+ Sbjct: 160 VDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGEQ 219 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + P + + QL + L H LRH+FATHLL+NG D+R++Q +LGH LSTTQI Sbjct: 220 ITPTGIEYVLNQLIKKSSLNAEIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQI 279 Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319 Y +V ++ + + Y HP Sbjct: 280 YAHVTKES----LQKNYRTFHP 297 >gi|325571148|ref|ZP_08146720.1| integrase/recombinase XerD [Enterococcus casseliflavus ATCC 12755] gi|325156233|gb|EGC68419.1| integrase/recombinase XerD [Enterococcus casseliflavus ATCC 12755] Length = 296 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 101/305 (33%), Positives = 159/305 (52%), Gaps = 22/305 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L L IERGLS+ T SY+ D +Q+L FL +K + +Q+ + +F+ + Sbjct: 7 DYLHYLTIERGLSQNTRASYQRDLQQYLAFL-----QKKQVTQWQQIDRVIVLSFLQSLQ 61 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 ++ R +S ++ F ++L++ + T + ++ + KK LP L+ ++ L++ Sbjct: 62 EAGKSSATVIRMVSSLRRFHQFLRQERFTDHDPMQHIDSPKKQQKLPDTLSLQEVERLIE 121 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 T + R+ AIL ++Y GLR+SE + L ++ L+ GKGDK RI Sbjct: 122 -----TPDTRAVLGIRDRAILEVMYATGLRVSELIGLKLNDLHLSMGLLQTTGKGDKERI 176 Query: 200 VPLLPSVRKAILEYY-DLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYL 254 VPL + I Y D P+ L + P LF G L+ + ++ L R Sbjct: 177 VPLGDLAIQWIETYLSDARPY---LTRKTPDESHLFVNNHGTQLSRQGIWKNLKALVRQA 233 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ + T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT++ K M E+Y Sbjct: 234 GITKNVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKR----MTEVY 289 Query: 315 DQTHP 319 Q P Sbjct: 290 KQHFP 294 >gi|315655029|ref|ZP_07907933.1| integrase/recombinase XerD [Mobiluncus curtisii ATCC 51333] gi|315490685|gb|EFU80306.1| integrase/recombinase XerD [Mobiluncus curtisii ATCC 51333] Length = 323 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 103/330 (31%), Positives = 162/330 (49%), Gaps = 20/330 (6%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY-TEEKIT 59 M NN + + E+ + WL + RGLS T+++Y D R+ + FL + + T Sbjct: 1 MSENNPAAVFAEEITADFGQWL---SVNRGLSPQTVRAYLTDLRELMTFLVDSDSGDGPT 57 Query: 60 IQTIRQ--LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117 Q +R + IRA++ + +L R ++ ++F + + R I N+R Sbjct: 58 AQQLRVDLANPARIRAWLGAMSRAGMSRATLARRVASFRTFSSWAQVRDIVPGDAGQNLR 117 Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW----IDARNSAILYLLYGCGLRISEA 173 ++ N+LP L+ A L++ + E + R+ A L LLY G+R+SE Sbjct: 118 AMRPDNALPTVLSATDAAHLLETARVAAYPEASTAPNPVKLRDWAALELLYATGIRVSEL 177 Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----L 229 L NI Q T+R+ GKGDK R+VP A+ EY + L +N + P + Sbjct: 178 TGLELGNINKSQRTIRVTGKGDKQRVVPYGIPAGLALEEYLEKGRPAL-VNPEKPALNRV 236 Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289 F G +G L+ + + + +L G+P H LRH+ ATHLL G DLRS+Q ILGH Sbjct: 237 FLGAKGGMLDTRIVRGMLHRLTAQAGVP-DLGPHGLRHTAATHLLDGGADLRSVQEILGH 295 Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 L+TTQ YT+++ D + +Y Q HP Sbjct: 296 ASLATTQRYTHLSM----DKLRAVYLQAHP 321 >gi|225874532|ref|YP_002755991.1| putative tyrosine recombinase XerD [Acidobacterium capsulatum ATCC 51196] gi|225794156|gb|ACO34246.1| putative tyrosine recombinase XerD [Acidobacterium capsulatum ATCC 51196] Length = 302 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 102/311 (32%), Positives = 157/311 (50%), Gaps = 25/311 (8%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +LL++ Q++L+ +E+GL L+ Q+Y+ D L+ A Y E T + + Sbjct: 8 DLLRDYQSYLR---VEKGLRPLSCQAYQSD----LLLFAEYLESMNT--ALLDARSEHVA 58 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F+ T + RS+ R LS ++ F K+L K +NM + LP++L ++ Sbjct: 59 GFLEHLNTHGVVSRSVARKLSCLRGFYKWLILDKRIHRDPTINMDSPSAWKILPKSLAQE 118 Query: 133 QALTLVDNVLLHTSH-ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 ++D L H E I RN AIL LLY GLR+SE L ++ D + ++ Sbjct: 119 DMTAMLDRARLLAEHPEADGIALRNYAILELLYAGGLRVSELTGLRVADLSLDAGRVLVR 178 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL---NIQLPLFRGIRGKPLNPGVFQRYIR 248 GKGDK R+VPL A+ +Y D +L Q LF RGKPL + Y+ Sbjct: 179 GKGDKERLVPLGQPAVAALRQYLDRGRAELARKARGAQGALFLSARGKPLT----REYVW 234 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 +L R G + H LRHS ATH++ +G DLR++Q+ LGH ++TTQ+YT+V + Sbjct: 235 KLVRQYG----ASPHMLRHSAATHMVEHGADLRTVQTFLGHADIATTQVYTHVALGH--- 287 Query: 309 WMMEIYDQTHP 319 + + Q HP Sbjct: 288 -LKAVVRQHHP 297 >gi|255534331|ref|YP_003094702.1| Integrase [Flavobacteriaceae bacterium 3519-10] gi|255340527|gb|ACU06640.1| Integrase [Flavobacteriaceae bacterium 3519-10] Length = 302 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 97/297 (32%), Positives = 152/297 (51%), Gaps = 15/297 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L+ ER S TL +Y D R+ L+ Y E + ++SY I+ ++ + QK Sbjct: 15 LKYERNFSDNTLDAYLRDIRK----LSDYAEFHLDGTGPLEISYENIQEYLFQLSKQKFS 70 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 +RS R +S IK+F KYL + + ++ + + K LP L+ + ++ + + Sbjct: 71 ERSQARWISSIKAFFKYLAEDEAREDNPTTLLESPKLGLYLPDTLSFEDVERIIKAINIS 130 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 T + RN ++ +LYGCGLR+SE + L NI + L++ GKGDK R VPL Sbjct: 131 TD-----LGRRNQCMIEVLYGCGLRVSELIDLKISNINFKELYLKVDGKGDKSRFVPLAT 185 Query: 205 SVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 K I EY + +N + LF RG ++ + I++L G+ + Sbjct: 186 YTAKLIKEYIQEIRSKYKINKKCEDVLFLNSRGSAMSRVIVFIIIKELTEKAGINKKISP 245 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HT RHSFATHLL NG DLR IQ +LGH ++TT+IYT++ ++ D ++ HP Sbjct: 246 HTFRHSFATHLLQNGADLRYIQEMLGHSSITTTEIYTHLKNEELRDVILNF----HP 298 >gi|327440847|dbj|BAK17212.1| site-specific recombinase XerD [Solibacillus silvestris StLB046] Length = 300 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 101/304 (33%), Positives = 161/304 (52%), Gaps = 17/304 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L +++ER LS TLQSY+ D L+ A + + I + I ++ Sbjct: 9 EDYLHFIKVERQLSDNTLQSYKRD----LVAYARHIHYEQQIMEFDNVMREHILLYLDSL 64 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R+ +++ R +S I+SF ++L + K+T + +++ KK SLP+ L+ ++ + Sbjct: 65 RSVGKSSKTISRQISSIRSFHQFLLREKVTNQDPTVHLEMPKKELSLPKVLSIEE----I 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D +L S E K R+ AIL ++YG G+RISE + L +++ +R+ GKG K R Sbjct: 121 DALLTAPSVE-KPQGTRDIAILEMMYGSGMRISELIDLNLEDVHLTMGFVRVFGKGGKER 179 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 I+PL S +A + Y + L L L F RGK + I++ G Sbjct: 180 IIPLGRSAIQACINYLEQARPQL-LGDALKNDAFFITQRGKRFTRQGCWKIIKEHAATAG 238 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + T H LRHSFATHL+ NG DLR++Q +LGH +STTQIYT+V+ + E+Y Sbjct: 239 ISKEITPHVLRHSFATHLIENGADLRAVQELLGHADISTTQIYTHVSKTR----LSEVYK 294 Query: 316 QTHP 319 Q HP Sbjct: 295 QFHP 298 >gi|116618399|ref|YP_818770.1| tyrosine recombinase XerD subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097246|gb|ABJ62397.1| tyrosine recombinase XerD subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 297 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 95/301 (31%), Positives = 164/301 (54%), Gaps = 16/301 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L + IERGLS+ T++SY D QF +L EK+ + Q+ + I ++++K R Sbjct: 10 DYLHYIRIERGLSENTIKSYHQDLVQFGEYL---NGEKLVLD---QVDHIVILSWLNKLR 63 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + S+ R ++ +++F YL + K+ + + ++R KK+ LP L+ ++ Sbjct: 64 DLGKSNSSVIRMVTTLRNFFGYLVREKVVAHNPMNDVRPPKKAEHLPAVLSIEEI----- 118 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + LL E + RN +L ++Y GLR+SE ++L ++ ++ GKGDK RI Sbjct: 119 DRLLQAPIEDTPLGLRNRTLLEVMYATGLRVSELVNLKMSDLHLQLGLIQTLGKGDKERI 178 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +P+ + Y++ L + + P +F RG ++ + I++L G+ Sbjct: 179 IPIGEIAIDWLTRYFNESRIVLLKDKESPYVFLNDRGNQISRQGIWKIIKKLVTTAGITK 238 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + HTLRHSFATH+L NG DLR +Q +LGH +STTQIYT+++ K + E+YD+ H Sbjct: 239 DVSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISKKR----LSEVYDEYH 294 Query: 319 P 319 P Sbjct: 295 P 295 >gi|89099048|ref|ZP_01171927.1| tyrosine recombinase [Bacillus sp. NRRL B-14911] gi|89086178|gb|EAR65300.1| tyrosine recombinase [Bacillus sp. NRRL B-14911] Length = 297 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 92/303 (30%), Positives = 161/303 (53%), Gaps = 15/303 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++++ L IE+GL+ T+ SYE D + +L F+ + + ++ ++ I F+ K Sbjct: 6 KDFVHFLLIEKGLANNTIVSYERDLKNYLKFIV----KSEGLASLNEVQRVHIVQFLKKL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + Q ++L R ++ I++F ++L + K+ +++ + ++ SLP+ L+ + TL Sbjct: 62 KEQGKSAKTLARHIASIRAFHQFLLREKVCENDPSVHIESPQQERSLPKVLSMAEVETL- 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L + ++ R+ A+L LLY G+R+SE + L ++ +R GKG+K R Sbjct: 121 ----LESPSDSSHYSLRDKAMLELLYATGIRVSELIGLQIGDVHLTMGFVRCIGKGNKER 176 Query: 199 IVPLLPSVRKAILEY--YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 I+P+ + +AI Y + F LF G+ L F + +++L G+ Sbjct: 177 IIPIGKTASEAIERYLLHGRPNFVSKSRRDDTLFLNHHGRQLTRQGFWKILKKLAGDAGI 236 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V + ++Y + Sbjct: 237 EKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTR----LKDVYSK 292 Query: 317 THP 319 HP Sbjct: 293 FHP 295 >gi|15838084|ref|NP_298772.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa 9a5c] gi|34223079|sp|Q9PD96|XERC_XYLFA RecName: Full=Tyrosine recombinase xerC gi|9106507|gb|AAF84292.1|AE003977_15 site-specific recombinase [Xylella fastidiosa 9a5c] Length = 294 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 92/307 (29%), Positives = 155/307 (50%), Gaps = 19/307 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++ L +ERG+S TL +Y R +A+ ++ + + L +++AF++ Sbjct: 7 DFFAFLHVERGMSAHTLDAYR---RDIGALIAWGVQQ--AVGEVVALDRAQLQAFVAAEH 61 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + + +SL+R LS + F +L KR + +R K LPR L+ +A++ V Sbjct: 62 RRGLSAKSLQRRLSACRGFYAWLVKRGHIAINPAAGLRAPKALRKLPRILDADEAVSFV- 120 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 +T + R+ A+L L Y GLR+SE L + D + + GKG + R+ Sbjct: 121 ----QIPTDTP-LGLRDRALLELFYSSGLRLSELCGLRWGGVDLDAGLVSVLGKGSRQRV 175 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 VP+ A+ E+ C Q P+F G G P++ Q I+QL + G+ Sbjct: 176 VPVGSYALSALREW---CASSGG-GAQQPVFPGRYGGPISARAVQVRIKQLAQRQGMAKH 231 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHSFA+HLL + GDLR +Q +LGH ++TTQIYT+++ + ++ ++YD HP Sbjct: 232 VHPHMLRHSFASHLLESSGDLRGVQELLGHADITTTQIYTHLDFQ----YLSKVYDAAHP 287 Query: 320 SITQKDK 326 +K + Sbjct: 288 RARRKAR 294 >gi|299536758|ref|ZP_07050066.1| tyrosine recombinase xerC [Lysinibacillus fusiformis ZC1] gi|298727770|gb|EFI68337.1| tyrosine recombinase xerC [Lysinibacillus fusiformis ZC1] Length = 299 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 95/302 (31%), Positives = 157/302 (51%), Gaps = 15/302 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + ++ +++E+ S T++ YE D FL FL TE I + + Y R +++K Sbjct: 10 EQFMLYIQVEKNFSVHTVREYESDLLDFLTFLQ--TE---GIDDLASVEYIHARLYVTKL 64 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 +K S+ R +S I+SF ++L ++ + ++ + KK + LP E++ L Sbjct: 65 YDEKRARASISRKISSIRSFFRFLNRQYGLDDGAFRSLYHPKKESRLPNFFYEEELKQLF 124 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D +T + K + RN AIL LLY G+R+SE S+ +++ S +R+ GKG K R Sbjct: 125 DA---NTGDDLKSL--RNIAILELLYATGIRVSELTSIQVEDVDFHYSIIRVMGKGRKER 179 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 I+P A+ +Y + P + L LF +RG L P + + ++ L Sbjct: 180 IIPFGQFASLAMQDYIEQARPRLMKKTNHLQLFVNMRGGELTPRGVRHILNEMIDKASLH 239 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 H LRH+FATHLL+NG DLR++Q +LGH LS+TQ+YT+V ++ + + Y Sbjct: 240 TKIYPHMLRHTFATHLLNNGADLRTVQELLGHSHLSSTQVYTHVTKEH----LRQTYMNA 295 Query: 318 HP 319 HP Sbjct: 296 HP 297 >gi|323702534|ref|ZP_08114197.1| tyrosine recombinase XerD [Desulfotomaculum nigrificans DSM 574] gi|323532508|gb|EGB22384.1| tyrosine recombinase XerD [Desulfotomaculum nigrificans DSM 574] Length = 296 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 98/307 (31%), Positives = 148/307 (48%), Gaps = 20/307 (6%) Query: 19 QNWLQN----LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 + WLQ L +ERGL++ TL SY D Q+L L +K + I Q + + Sbjct: 2 ERWLQEFIHYLAVERGLAQNTLASYRIDLSQYLSHL-----KKQGVTAIDQANRNHVLTH 56 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 + K + ++ R L+ +K F ++L + TE +N+ + K LP+ L + Sbjct: 57 LYKLQKSGKAPATISRHLAALKHFYRFLLADGVVTEDPTVNLESPKLGQRLPQVLTTAEV 116 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 L+ L R+ A+L L+Y G+R+SE ++L +++ D +R GKG Sbjct: 117 EALLSQPQL-----ADPAGLRDKAMLELIYATGIRVSEMVTLDIEHVELDMGYIRCFGKG 171 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLNPGVFQRYIRQLRR 252 K RI+PL + EY L LF +GK L F + +++ R Sbjct: 172 SKERIIPLGAVAAHYVREYLARSRVKLTKGKTEHRALFVNAQGKRLTRQGFWKILKKYAR 231 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 + T HTLRHSFATHLL NG DLRS+Q +LGH +STTQIYT++ + E Sbjct: 232 EANINKHITPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHLTKIR----LRE 287 Query: 313 IYDQTHP 319 +Y HP Sbjct: 288 VYTNAHP 294 >gi|16801135|ref|NP_471403.1| hypothetical protein lin2069 [Listeria innocua Clip11262] gi|34222947|sp|Q92A53|XERD_LISIN RecName: Full=Tyrosine recombinase xerD gi|16414570|emb|CAC97299.1| lin2069 [Listeria innocua Clip11262] gi|313618111|gb|EFR90213.1| tyrosine recombinase XerD [Listeria innocua FSL S4-378] gi|313623100|gb|EFR93374.1| tyrosine recombinase XerD [Listeria innocua FSL J1-023] Length = 297 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 96/308 (31%), Positives = 160/308 (51%), Gaps = 27/308 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L L +E+GLS T+++YE D L + Y + T+ L +I F++ R Sbjct: 7 DFLHFLIVEKGLSANTIKAYERD----LHYFVSYMDTSRTLTDPDTLERNDIVGFMAFAR 62 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + RS+ R ++ ++SF YL + ++ + K++ SLP+ LN +D Sbjct: 63 KEGKSPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQSLPKVLN-------LD 115 Query: 140 NV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 +V LL +S + + R+ A+L +LY GLR++E + L ++ ++ GKGDK Sbjct: 116 DVEKLLSSSDTSTPLGLRDQAMLEILYATGLRVTELVKLKMDDLHLQMGFIQTIGKGDKE 175 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI------RGKPLNPGVFQRYIRQLR 251 RI+PL + + +Y + + ++ P +R G+ L F + ++ + Sbjct: 176 RIIPLGKTATTVLEQYLE----EARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIA 231 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 + G+ T HTLRHSFATHLL NG DLRS+Q +LGH +STTQIYT+V + Sbjct: 232 KESGIEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLR----LK 287 Query: 312 EIYDQTHP 319 ++Y Q HP Sbjct: 288 DVYKQFHP 295 >gi|284048585|ref|YP_003398924.1| tyrosine recombinase XerC [Acidaminococcus fermentans DSM 20731] gi|283952806|gb|ADB47609.1| tyrosine recombinase XerC [Acidaminococcus fermentans DSM 20731] Length = 311 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 98/311 (31%), Positives = 159/311 (51%), Gaps = 25/311 (8%) Query: 19 QNWLQN----LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR--QLSYTEIR 72 + W ++ LE+E+ S LT+++Y D R F F+A TE+ R Q++ +IR Sbjct: 14 EKWPEDFALYLEVEKDDSPLTIENYLADIRHFKEFMAQRTED------FRWPQVTVLDIR 67 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 +++++ + + R++ R +S ++SF +YL++ + +R K LP L E Sbjct: 68 SYLAQMHDRDLSRRTIARRISSLRSFYRYLRREGRVKTNPFTRVRTPKLEKKLPVFLEEF 127 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + N+LL T + R+ AIL LY G R+SE + LT + + G Sbjct: 128 EI-----NLLLRMPDCTTVLGRRDRAILEFLYSTGCRVSELVGLTLTRVDLGNRYAILLG 182 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIR 248 KG K R+VPL A+ +Y L Q P +F RG+PL+ +R + Sbjct: 183 KGRKERLVPLGHPCVAAMEDYLRHSRGTLMEKYQAPRHQTVFVNSRGRPLSARSVRRILD 242 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 + L + HT+RH+FATHLL +G DLR++Q +LGH LSTTQIYT+V ++ Sbjct: 243 KYVEMTALQKHVSPHTIRHTFATHLLDHGADLRAVQELLGHVSLSTTQIYTHVTAER--- 299 Query: 309 WMMEIYDQTHP 319 + +Y++ HP Sbjct: 300 -LTAVYEKHHP 309 >gi|317486704|ref|ZP_07945521.1| phage integrase [Bilophila wadsworthia 3_1_6] gi|316922087|gb|EFV43356.1| phage integrase [Bilophila wadsworthia 3_1_6] Length = 339 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 102/323 (31%), Positives = 159/323 (49%), Gaps = 27/323 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 W+ + ++G S T+ +Y D QF +L E+ ++ +L + + + Sbjct: 20 TWMTD---QKGFSPATISAYRTDLLQFEEWL---HREQHSLARPGELEKYHFQDYSAHLF 73 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + S+ R LS ++S +YL K K ++ +RN K+ P ALN Q TL+D Sbjct: 74 HEGQARSSIGRKLSALRSLFRYLMKMKKIDKNPAKLVRNPKRELRHPTALNVDQMFTLLD 133 Query: 140 NVLLHTSHETKWIDARNS----------------AILYLLYGCGLRISEALSLTPQNIMD 183 + + +R + A+ LLYG GLRISEAL L ++ Sbjct: 134 EASVESGGAAGLDGSRQAEQTVTDREHAGHTRDLALAELLYGSGLRISEALDLDVDDVDP 193 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 +R+ GKG K RI PL + +A+ + + + + LF G RGK LN Sbjct: 194 ASGFIRVIGKGSKERIAPLSDTSVRALFLWLRVRAL-IAPPAEKALFVGNRGKRLNRRQA 252 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 R + ++R+ GLP + HTLRH+FATH+L NG D+RS+Q +LGH LSTTQ YT++ Sbjct: 253 ARILDEIRKSAGLPQHLSPHTLRHTFATHMLENGADMRSVQELLGHASLSTTQRYTHITL 312 Query: 304 KNGGDWMMEIYDQTHPSITQKDK 326 D +M +YD+ HP + + K Sbjct: 313 ----DHLMRVYDKAHPRSSVRGK 331 >gi|229075797|ref|ZP_04208774.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-18] gi|229098560|ref|ZP_04229501.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-29] gi|229104696|ref|ZP_04235358.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-28] gi|229117586|ref|ZP_04246958.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-3] gi|228665906|gb|EEL21376.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-3] gi|228678760|gb|EEL32975.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-28] gi|228684882|gb|EEL38819.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-29] gi|228707349|gb|EEL59545.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-18] Length = 296 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 93/304 (30%), Positives = 162/304 (53%), Gaps = 18/304 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++++ + +E+GL+K T+ SYE D + ++ +L + ++T +++ I F+ Sbjct: 6 KDFIHYMIVEKGLAKNTVVSYERDLKSYVKYLQNVEQ----MKTFHEVTRLHIVNFLQYL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + ++L R ++ I+SF ++L + + +++ + LP+ L+ + Sbjct: 62 KENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLS-------I 114 Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 D V LL T T R+ A+L LLY GLR+SE ++L +++ +R GKG+K Sbjct: 115 DEVEALLQTPKMTSAFGIRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNK 174 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RI+PL +AI +Y + +L + LF G L+ F + +++L + Sbjct: 175 ERIIPLGSLATEAIQKYIEKGRRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEAN 234 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V+ + ++Y Sbjct: 235 IEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKAR----LKDVYK 290 Query: 316 QTHP 319 Q HP Sbjct: 291 QFHP 294 >gi|311693653|gb|ADP96526.1| site-specific tyrosine recombinase XerD [marine bacterium HP15] Length = 300 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 97/294 (32%), Positives = 150/294 (51%), Gaps = 14/294 (4%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 +E GL + T Q+Y D L+ L+ + E + +R + T++ A++S Q + Sbjct: 18 LEDGLGEKTRQAYRSD----LLRLSEWLESQPGKPLLRDVRRTDLLAWMSSGLAQGVKSS 73 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 + R LSG++ F ++L + + TE L + + + LP +L E + + LL Sbjct: 74 TAARRLSGLRRFYRFLLREGLITEDPTLRIDSPRLPRRLPDSLTEGEV-----DALLSEP 128 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 I+ R+ A+L +LYGCGLR+SE L + Q +RI GKGDK R+VPL Sbjct: 129 DPGIAIELRDKAMLEILYGCGLRVSELTELRVDQVNLRQGVVRITGKGDKERLVPLGEEA 188 Query: 207 RKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 +L+Y + P L LF G R + F I+ +G+ + HTL Sbjct: 189 VDWLLQYMKEGRPELLKGRSCDALFPGNRAAAMTRQTFWHRIKHYAVRVGIRKHLSPHTL 248 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 RH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + + ++ HP Sbjct: 249 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARQR----LQSLHQAHHP 298 >gi|224541324|ref|ZP_03681863.1| hypothetical protein CATMIT_00484 [Catenibacterium mitsuokai DSM 15897] gi|224525761|gb|EEF94866.1| hypothetical protein CATMIT_00484 [Catenibacterium mitsuokai DSM 15897] Length = 310 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 103/310 (33%), Positives = 167/310 (53%), Gaps = 22/310 (7%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 + E++ +L L+ ++ S LTLQSYE + FL+F+ +E I++Q ++ Y I+ + Sbjct: 1 MDEKKAFLHYLKYQKNYSVLTLQSYERELTDFLLFIG---KESISLQ---EVDYYVIQNY 54 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 + + + ++ LS ++SF KYL ++ + + +LK + P L + Sbjct: 55 LIYLNEKHLSHTTINHYLSSLRSFFKYLCQQNSVVSNPFSQVHSLKTGSRNPDFLYVDEM 114 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 + +D++ HTS + RN A+L L+Y GLR+SE +SL I ++ +R+ GKG Sbjct: 115 MGYLDSIDTHTS-----LGVRNKALLELMYASGLRVSEVVSLRLSQIDFNRQMIRVLGKG 169 Query: 195 DKIRIVPLLPSVRKAILEYYD---LCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQL 250 K R VP +K +L+Y + + + +F RGK L N GV R + Sbjct: 170 SKEREVPFHDYAKKWLLQYINDDRISIMNEYHEAHDYVFVNRRGKKLTNRGVENIIDRTM 229 Query: 251 RRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 YL PL HT+RHSFATHLL G D+R +Q +LGH LSTTQIYT+V+ ++ Sbjct: 230 --YLYDPLRKIHPHTIRHSFATHLLDAGMDIRVVQELLGHSSLSTTQIYTHVSQEH---- 283 Query: 310 MMEIYDQTHP 319 + E+Y++T P Sbjct: 284 LREVYNRTCP 293 >gi|255975766|ref|ZP_05426352.1| phage integrase [Enterococcus faecalis T2] gi|307277985|ref|ZP_07559069.1| tyrosine recombinase XerC [Enterococcus faecalis TX0860] gi|312899495|ref|ZP_07758825.1| tyrosine recombinase XerC [Enterococcus faecalis TX0470] gi|255968638|gb|EET99260.1| phage integrase [Enterococcus faecalis T2] gi|306505382|gb|EFM74568.1| tyrosine recombinase XerC [Enterococcus faecalis TX0860] gi|311293365|gb|EFQ71921.1| tyrosine recombinase XerC [Enterococcus faecalis TX0470] Length = 299 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 100/322 (31%), Positives = 160/322 (49%), Gaps = 28/322 (8%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 ME N PE+ + L+ +ERG S+ T ++Y+ D + F FL T Sbjct: 1 MEEKNWPELFARYLI-----------VERGYSEKTKKAYQEDIQHFFSFLK--TSGNDNY 47 Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 T+ L ++RA++S+ Q+ S+ R ++ ++SF ++L K + E+ + K Sbjct: 48 LTVEHL---DVRAYLSELYDQEYSRNSISRKIASLRSFYQFLLKNEAIQENPFSYVHMKK 104 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 K LPR EK+ + L ++ +D RN A+L +LYG G+R+SE +LT Sbjct: 105 KQLRLPRFFYEKEM-----DALFESAQGEHPLDLRNQALLEVLYGTGIRVSECANLTVDA 159 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKP 237 + S L + GKG+K R VP + A+ +Y + L Q +F G+ Sbjct: 160 VDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGEQ 219 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + P + + QL + L H LRH+FATHLL+NG D+R++Q +LGH LSTTQI Sbjct: 220 ITPTGIEYVLNQLIKKSSLNAEIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQI 279 Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319 Y +V ++ + + Y HP Sbjct: 280 YAHVTKES----LQKNYRTFHP 297 >gi|320355009|ref|YP_004196348.1| tyrosine recombinase XerD [Desulfobulbus propionicus DSM 2032] gi|320123511|gb|ADW19057.1| tyrosine recombinase XerD [Desulfobulbus propionicus DSM 2032] Length = 306 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 102/303 (33%), Positives = 161/303 (53%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +LQ+L ++R L++ T+ +Y+ D F F F + I I+ I + + + +R Sbjct: 17 QLFLQHLTLQRRLARNTVAAYQADLEFFFRF--FSDADAILIERIDKEHVQQFFQYCHQR 74 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R IG RS R L+ +++F ++L+ R + + + + K SLP+ L + V Sbjct: 75 R---IGARSNARRLAALRAFFRFLQDRGVLAGNPLAEIDAPKIGRSLPKVLT----IAEV 127 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D +L S T + RN A+L+LLY GLR+SE ++L LRI GKG+K R Sbjct: 128 DALLRPPSPPTP-LAIRNHAMLHLLYASGLRVSELVNLPVNGCNLHTGHLRILGKGNKER 186 Query: 199 IVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 IVP +V IL Y + P L LF RG+ + F + +R++ G+ Sbjct: 187 IVPF-SAVAGTILRDYIERVRPLLLKGKGSPLLFCSNRGEAMTRHRFWQIVREIALIAGI 245 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + + H LRHSFATHL++ G DLRS+Q +LGH ++TTQIYT+V++ D + + + Sbjct: 246 RKAISPHVLRHSFATHLVAGGADLRSVQMMLGHSDIATTQIYTHVDA----DRLKSTHRR 301 Query: 317 THP 319 HP Sbjct: 302 FHP 304 >gi|184159192|ref|YP_001847531.1| site-specific recombinase XerC [Acinetobacter baumannii ACICU] gi|332876021|ref|ZP_08443807.1| putative tyrosine recombinase XerC [Acinetobacter baumannii 6014059] gi|183210786|gb|ACC58184.1| Site-specific recombinase XerC [Acinetobacter baumannii ACICU] gi|332735887|gb|EGJ66928.1| putative tyrosine recombinase XerC [Acinetobacter baumannii 6014059] Length = 308 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 94/310 (30%), Positives = 174/310 (56%), Gaps = 24/310 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL+ +I+ S+ T+ +YE D + FL F +K+ + R + +++R ++++R Sbjct: 15 WLKERKIQNQ-SEHTITAYERDVKSFLEFCEL---KKVDL---RNVEASDLREYLAQRVE 67 Query: 81 Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q ++ S++R L+ I+ F+K+ ++ K + + + ++ LP ++ + ++D Sbjct: 68 QDQLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILD 127 Query: 140 NVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + + + W+ R+ A+L LLY GLR++E LT ++I ++ +RI GKG+K R Sbjct: 128 QPMPEKPVDQQLWL--RDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTR 185 Query: 199 IVPLLPSVRKAILEY---YDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 IVP ++++L + Y++ FD N ++ F RG L P ++ ++ + Sbjct: 186 IVPFGKKAKESLLNWLKIYNIWKGHFDQNASV----FISQRGGALTPRQIEKRVKLQAQR 241 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ + H LRH FA+H+LS+ GDLRS+Q +LGH LSTTQIYT+++ D + ++ Sbjct: 242 AGVNVDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDF----DHLAQV 297 Query: 314 YDQTHPSITQ 323 YDQ HP T+ Sbjct: 298 YDQAHPRATK 307 >gi|77359472|ref|YP_339047.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas haloplanktis TAC125] gi|76874383|emb|CAI85604.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas haloplanktis TAC125] Length = 308 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 93/301 (30%), Positives = 159/301 (52%), Gaps = 17/301 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +E+G+S+ TL +Y D +F FL + + T+ L ++ ++++ R Sbjct: 23 ETFLDCLYLEQGVSENTLSAYRSDLDKFCQFL-----KGKNLMTVTGL---DVESYLAHR 74 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + RS RS+S +K F +Y + K+ ++S +LN+ K SLP+ L+E + Sbjct: 75 VDLGLKPRSTARSISALKRFYQYFVREKLISDSPMLNIAQPKAGQSLPKTLSEAEV---- 130 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL + + + R+ A+L LLY GLR+SE + L + I Q+ + ++GKG+K R Sbjct: 131 -EALLSAPNTDEPMGLRDKAMLELLYATGLRVSELVGLRIEQINLRQAVVFVKGKGNKER 189 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +VPL + ++ + + + +F RG + F ++ + Sbjct: 190 LVPLGEEAMYWLEQFLKVGRAQMIKHATDFVFPSKRGVGMTRQTFWHRVKHYAILASIES 249 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 S + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + + ++ Q H Sbjct: 250 SLSPHTLRHAFATHLLNHGADLRVVQMMLGHSDLSTTQIYTHV----ANERLKSVHAQHH 305 Query: 319 P 319 P Sbjct: 306 P 306 >gi|332287662|ref|YP_004422563.1| site-specific tyrosine recombinase xerD [Chlamydophila psittaci 6BC] gi|325506468|gb|ADZ18106.1| site-specific tyrosine recombinase xerD [Chlamydophila psittaci 6BC] gi|328914913|gb|AEB55746.1| integrase/recombinase XerD [Chlamydophila psittaci 6BC] Length = 299 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 104/303 (34%), Positives = 158/303 (52%), Gaps = 33/303 (10%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L ++RGLS ++ +Y D FL A I +I ++S + F+ + +K Sbjct: 18 LSVDRGLSCNSISAYIQDITLFLKINA--------ITSIAEISQDSVHLFVDQLHKRKEA 69 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 + +L R L +K F ++LK+ K+ ++ + K LP L K+ TL+ + Sbjct: 70 EATLARRLIALKVFFRFLKEAKLLEHPPLIEHPKIWKR--LPTVLTPKEVDTLL--AIPK 125 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + + I R++AIL+ LY G+R+SE L ++ DD LR+ GKG K R+VPL Sbjct: 126 KTTTSSMISTRDTAILHTLYSTGIRVSELCGLHIGDVSDD--FLRVTGKGSKTRLVPLGK 183 Query: 205 SVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLN-PGVFQR---YIRQLRRYLGL 256 +AI Y LCPF NL + P LF IRG+ L V++R Y +Q+ Sbjct: 184 LASEAIDAY--LCPFRENLQKKQPEEHHLFLSIRGRKLERSCVWKRIHYYAKQVTHKRVS 241 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 P H+LRH+FATHLL N DLR IQ +LGH R+++T++YT+V D +ME + Sbjct: 242 P-----HSLRHAFATHLLDNKADLRVIQEMLGHARIASTEVYTHV----AADTLMENFLS 292 Query: 317 THP 319 HP Sbjct: 293 YHP 295 >gi|258544388|ref|ZP_05704622.1| tyrosine recombinase XerD [Cardiobacterium hominis ATCC 15826] gi|258520347|gb|EEV89206.1| tyrosine recombinase XerD [Cardiobacterium hominis ATCC 15826] Length = 289 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 85/302 (28%), Positives = 155/302 (51%), Gaps = 19/302 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + + + +E GL++ ++ SY D R E++ + + S +++A +++ Sbjct: 4 ERFCEAMWLEAGLAEASVASYRRDLR---------LAERLCAKPLSDFSAADVQAVLAQL 54 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + SL R ++ F ++ + ++ + + + ++ LPR+L+E + L+ Sbjct: 55 LDLQRKASSLARMRVSLRRFFAWMVEERLRADDPTVLLEAVRHEKPLPRSLSEAEVERLL 114 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L T R++A+L LLY CGLR+SE + L + ++ LR++GKGDK+R Sbjct: 115 AAPDLATP-----AGLRDAAMLELLYACGLRVSELVGLPLSAVFLQEAVLRVRGKGDKVR 169 Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ + + Y + P L + LF RG +N F + I +G+ Sbjct: 170 LVPMGEQAAEMVERYCREARPLLLEGRVSDVLFIAARGGAMNRRTFWKLIHDYAIAVGIR 229 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + + HTLRH+FATHL+++G DLR +Q +LGH LSTTQIYT+V + +++ Sbjct: 230 TAVSPHTLRHAFATHLVNHGADLRVVQMLLGHSNLSTTQIYTHVAEAR----LAKVFAAH 285 Query: 318 HP 319 HP Sbjct: 286 HP 287 >gi|330504633|ref|YP_004381502.1| site-specific tyrosine recombinase XerD [Pseudomonas mendocina NK-01] gi|328918919|gb|AEB59750.1| site-specific tyrosine recombinase XerD [Pseudomonas mendocina NK-01] Length = 313 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 99/302 (32%), Positives = 149/302 (49%), Gaps = 16/302 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ +E+GLS T +Y D F A+ + +Q I I ++ R Sbjct: 25 ERFLEAQWLEKGLSAHTQAAYRSDLEHFN---AWLDARGLALQHI---GRDAILDHLAWR 78 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q RS R LSG++ F ++L + + +E L + + LP++L+E Sbjct: 79 LEQGYQARSTARFLSGVRGFYRFLLREMLISEDPTLQVELPQIGRPLPKSLSEADV---- 134 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL I R+ A+L +LY CGLR+SE + LT + + Q LR+ GKG K R Sbjct: 135 -EALLQAPDLDDPIGLRDRAMLEVLYACGLRVSELVGLTLEQVNLRQGVLRVFGKGSKER 193 Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL I Y + P L LF +RG+ + F I+ R G+ Sbjct: 194 LVPLGEEAIAWIERYMREARPLLLGGKPSDVLFPSLRGEQMTRQTFWHRIKHQARVAGIS 253 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT++ + E++ Q Sbjct: 254 KALSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIARAR----LQELHAQH 309 Query: 318 HP 319 HP Sbjct: 310 HP 311 >gi|81428639|ref|YP_395639.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus sakei subsp. sakei 23K] gi|78610281|emb|CAI55330.1| Site-specific DNA tyrosine recombinase, XerD [Lactobacillus sakei subsp. sakei 23K] Length = 294 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 102/306 (33%), Positives = 159/306 (51%), Gaps = 24/306 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR----AF 74 Q++L L+IERGLS+ T QSY D +Q+ FL +K+T S+TE R F Sbjct: 6 QDYLHYLKIERGLSENTRQSYRQDLKQYQQFLV---SQKLT-------SFTEDRFIVLGF 55 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 + + T + S+ RS+S ++ F +YL + + +L + + K+ LP L+ ++ Sbjct: 56 LQAQTTAQKAQSSITRSISTLRKFYQYLAREGRIQKDPMLQIDSPKQGRHLPAVLSSEEI 115 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 LL T + + R+ AIL +LY GLR+SE + L ++ ++ GKG Sbjct: 116 -----ERLLKTPDTSTPLGLRDRAILEVLYATGLRVSELVHLKLTDLHLSLGLIQTLGKG 170 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRY 253 DK RI+P+ I +Y + L P LF G L + ++ + + Sbjct: 171 DKERIIPIGDVAVDWINQYLERSRNRLTKGKDSPYLFVNFHGNGLTRQGIWKNLKAIVQA 230 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ T HTLRHSFAT LL NG DLR +Q +LGH +STTQIYT+++ K+ + E+ Sbjct: 231 AGIDKDVTPHTLRHSFATVLLENGADLRIVQELLGHSDISTTQIYTHISKKH----LTEV 286 Query: 314 YDQTHP 319 Y ++HP Sbjct: 287 YQRSHP 292 >gi|301063905|ref|ZP_07204380.1| tyrosine recombinase XerC [delta proteobacterium NaphS2] gi|300441980|gb|EFK06270.1| tyrosine recombinase XerC [delta proteobacterium NaphS2] Length = 329 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 99/318 (31%), Positives = 160/318 (50%), Gaps = 20/318 (6%) Query: 12 FELLKER--QNWLQNLEIERGLSKLTLQSYECDTRQFLIF----LAFYTEEKITIQTIRQ 65 F LL E + +++ L E+G SK T ++Y D QF F +A +E +I + Sbjct: 19 FGLLLEEGIKRFIRYLHDEKGYSKHTQRNYRVDLEQFASFVAREMALPLKETDLDFSIEE 78 Query: 66 LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 + IR F+ K+ ++ R LS ++SF +L+K ++ + +++ K + Sbjct: 79 IESKTIRKFVGSL-YGKLKRTTIARKLSAVRSFFLFLEKEELIKTNPAGELQSPKLEKYI 137 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 P L + L+D + + + R+ AIL +LY CG+R++E + +I DQ Sbjct: 138 PSHLPVDEVFRLMD-----LPNRERSLGLRDLAILEVLYSCGIRVAELAGMNVSSIDHDQ 192 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI----QLPLFRGIRGKPLNPG 241 +++ GKG+K R+VP+ KA+ Y D PL RG L Sbjct: 193 RLVKVTGKGNKERLVPIGRQALKAVKAYLAATDEDRRRAALRGEGEPLIMNFRGGRLTTR 252 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 R +++ GL + H++RH+FATH+L G DLRS+Q +LGH LSTTQ YT+V Sbjct: 253 SIGRIVKKYAGAGGLTEDISPHSMRHTFATHMLDGGADLRSVQELLGHKSLSTTQKYTHV 312 Query: 302 NSKNGGDWMMEIYDQTHP 319 + D +ME+YD+THP Sbjct: 313 SL----DRLMEVYDKTHP 326 >gi|222053854|ref|YP_002536216.1| tyrosine recombinase XerC [Geobacter sp. FRC-32] gi|221563143|gb|ACM19115.1| tyrosine recombinase XerC [Geobacter sp. FRC-32] Length = 294 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 100/307 (32%), Positives = 155/307 (50%), Gaps = 21/307 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-- 77 + + L IER +S T+ Y D FL+F EK+ + +S+ IR +I+ Sbjct: 7 QFCRYLAIERNVSPHTVAGYRSD---LTFFLSFLDREKVQAD-VGSISHLLIRRYIAGLY 62 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 + QK S+ R L+ I++ KYL ++ + +++ + KK +P L + TL Sbjct: 63 KDHQK---SSIGRQLAAIRALFKYLLRQGLVSKNPAELVSTPKKEKKIPYHLTIDEVTTL 119 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 V+ + + R+ AIL LLY CG+R+SE +L + ++ +R+ GKG+K Sbjct: 120 VE-----APQQEDLLSLRDRAILELLYSCGIRVSELTALNVGEVEMNERLIRVCGKGNKE 174 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 RIVP+ RKA+ D + PL RG L R + + + Sbjct: 175 RIVPI---GRKALEALADYLSARNTPPEEAPLILNARGTRLTSRSVARIVDRYIVKIATM 231 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + HTLRH+FATH+L G DLR+IQ +LGH LSTTQ YT+V+ D +ME+YD+ Sbjct: 232 KKISPHTLRHTFATHMLEGGADLRAIQELLGHASLSTTQKYTHVSI----DRLMEVYDKA 287 Query: 318 HPSITQK 324 HP +K Sbjct: 288 HPKARKK 294 >gi|85859268|ref|YP_461470.1| integrase/recombinase [Syntrophus aciditrophicus SB] gi|123725256|sp|Q2LT92|XERC_SYNAS RecName: Full=Tyrosine recombinase xerC gi|85722359|gb|ABC77302.1| integrase/recombinase [Syntrophus aciditrophicus SB] Length = 310 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 108/320 (33%), Positives = 161/320 (50%), Gaps = 31/320 (9%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA--FYTEEKITIQTIRQLSYTE 70 EL+KE ++ ++ER LS T ++Y D QF I+L ++ + + + Y Sbjct: 3 ELIKEFDRYM---DLERNLSTHTRKNYLSDLNQFKIYLEENHRVPTELKTEAWQNVDYMM 59 Query: 71 IRAFIS---KRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLP 126 +RAF+ +RR +K+ ++ R L+ +++F KYL +KRKI N ++ S P Sbjct: 60 VRAFLGALYRRRVKKV---TIARKLASLRAFFKYLHQKRKIQC--------NPLEAVSTP 108 Query: 127 RALNEKQALTLVDN--VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 R A+ VD VLL+ R+ AIL L Y G+R+SE + +++ Sbjct: 109 RTEKYIPAVLSVDEIFVLLNLPFPEDVFGLRDRAILELFYSSGIRVSELTGINEEDMDFS 168 Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-----LNIQLPLFRGIRGKPLN 239 Q +RI+GKG K RIVP+ +A+ Y P +PLF R L+ Sbjct: 169 QGLIRIRGKGKKERIVPIGQPASEAVQRYMMKKPGSETSGKAVATCPVPLFVNRRQGRLS 228 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 R + + GL + HTLRHSFATHL+ G DLRSIQ +LGH LSTTQ YT Sbjct: 229 ARSVARILSKYVSMSGLQKQISPHTLRHSFATHLMDAGADLRSIQELLGHESLSTTQKYT 288 Query: 300 NVNSKNGGDWMMEIYDQTHP 319 V+ + +M +YD+ HP Sbjct: 289 AVSV----NRLMAVYDRAHP 304 >gi|329571728|gb|EGG53409.1| tyrosine recombinase XerD [Enterococcus faecalis TX1467] Length = 305 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 97/304 (31%), Positives = 163/304 (53%), Gaps = 20/304 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L L+IERGLS T +SYE D ++++ FL ++ + + ++ I F+ Sbjct: 7 DYLHYLQIERGLSNNTRRSYERDLKKYVAFL-----QEQGLHSWDEVDRYMITEFLQSLH 61 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 ++ S+ R +S ++ F ++L++ +++ + + ++ + KK LP L+ VD Sbjct: 62 EEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLS-------VD 114 Query: 140 NV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 V L+ T +K + RN AIL ++Y GLR+SE + + ++ L+ GKGDK Sbjct: 115 EVTRLIETPDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKE 174 Query: 198 RIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RI+PL + I Y + L N + LF G+PL+ + ++Q+ R Sbjct: 175 RIIPLGDYAIQWIERYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREAQ 234 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + T HTLRHSFATHLL NG DLR +Q +LGH +STTQIYT++ + M ++Y Sbjct: 235 IEKNITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQR----MADVYK 290 Query: 316 QTHP 319 + P Sbjct: 291 EHFP 294 >gi|322509106|gb|ADX04560.1| xerC [Acinetobacter baumannii 1656-2] gi|323519136|gb|ADX93517.1| site-specific recombinase XerC [Acinetobacter baumannii TCDC-AB0715] Length = 295 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 94/310 (30%), Positives = 174/310 (56%), Gaps = 24/310 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL+ +I+ S+ T+ +YE D + FL F +K+ + R + +++R ++++R Sbjct: 2 WLKERKIQ-NQSEHTITAYERDVKSFLEFCEL---KKVDL---RNVEASDLREYLAQRVE 54 Query: 81 Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q ++ S++R L+ I+ F+K+ ++ K + + + ++ LP ++ + ++D Sbjct: 55 QDQLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILD 114 Query: 140 NVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + + + W+ R+ A+L LLY GLR++E LT ++I ++ +RI GKG+K R Sbjct: 115 QPMPEKPVDQQLWL--RDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTR 172 Query: 199 IVPLLPSVRKAILEY---YDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 IVP ++++L + Y++ FD N ++ F RG L P ++ ++ + Sbjct: 173 IVPFGKKAKESLLNWLKIYNIWKGHFDQNASV----FISQRGGALTPRQIEKRVKLQAQR 228 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ + H LRH FA+H+LS+ GDLRS+Q +LGH LSTTQIYT+++ D + ++ Sbjct: 229 AGVNVDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDF----DHLAQV 284 Query: 314 YDQTHPSITQ 323 YDQ HP T+ Sbjct: 285 YDQAHPRATK 294 >gi|92115230|ref|YP_575158.1| phage integrase [Chromohalobacter salexigens DSM 3043] gi|123083908|sp|Q1QSU9|XERC_CHRSD RecName: Full=Tyrosine recombinase xerC gi|91798320|gb|ABE60459.1| phage integrase [Chromohalobacter salexigens DSM 3043] Length = 298 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 97/296 (32%), Positives = 146/296 (49%), Gaps = 23/296 (7%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 S TL +Y D FL E I L ++R F+ RT+ + RSL R Sbjct: 17 SPATLDAYRRDLTALARFL-----EASGIDDWAALDVAQVRRFMGAERTRGLAPRSLARR 71 Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 + + F +L + I + + + ++ LPR ++ Q +D T H+ Sbjct: 72 RAALSRFADHLVRSGILDHNPVALTQTPRQPRHLPRPVDVDQLARFLD-----TPHDGTP 126 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGKGDKIRIVPLLPSVRKAI 210 + R+ A+L L Y CGLR++E LT ++ D D LR+ GKG+K R +P+ + A+ Sbjct: 127 LAVRDQAMLELFYSCGLRLAE---LTALDVTDLDARRLRVVGKGNKPRQMPIGRRAQAAL 183 Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 ++Y L L + + LF G RG L Q+ + QL R GL H LRHSFA Sbjct: 184 ADWYRLR-GQLAGHDEPALFVGQRGARLGHRAVQKRLAQLARERGLAEHLHPHRLRHSFA 242 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW--MMEIYDQTHPSITQK 324 +HLL + DLR++Q +LGH LSTTQ+YT + DW + + YDQ HP ++ Sbjct: 243 SHLLESSQDLRAVQELLGHANLSTTQVYTRL------DWQHLADAYDQAHPRARRR 292 >gi|315127593|ref|YP_004069596.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas sp. SM9913] gi|315016107|gb|ADT69445.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas sp. SM9913] Length = 308 Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 92/301 (30%), Positives = 160/301 (53%), Gaps = 17/301 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L +L +E+G+S+ TL +Y D +F FL E +T+ ++ ++ ++++ R Sbjct: 23 ETFLDSLYLEQGVSENTLSAYRSDLDKFCQFLK--GESLMTVTSL------DVESYLAHR 74 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + RS RS+S +K F +Y + KI ++S ++N+ K SLP+ L+E + Sbjct: 75 VDLGLKPRSTARSISALKRFYQYFVREKIISDSPMVNIAQPKAGQSLPKTLSEAEV---- 130 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL + + + R+ A+L LLY GLR++E + L + I Q+ + ++GKG+K R Sbjct: 131 -EALLSAPNIEEPMGLRDKAMLELLYATGLRVTELVGLRMEQINLRQAVVFVKGKGNKER 189 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +VPL + ++ L + + +F RG + F I+ + Sbjct: 190 LVPLGEEAMYWLEQFLKLGRAQMIKHATDFVFPSKRGVGMTRQTFWHRIKHYAILASVES 249 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + + ++ + H Sbjct: 250 PLSPHTLRHAFATHLLNHGADLRVVQMMLGHSDLSTTQIYTHV----ANERLKSVHAEHH 305 Query: 319 P 319 P Sbjct: 306 P 306 >gi|332286571|ref|YP_004418482.1| site-specific tyrosine recombinase XerC [Pusillimonas sp. T7-7] gi|330430524|gb|AEC21858.1| site-specific tyrosine recombinase XerC [Pusillimonas sp. T7-7] Length = 316 Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 99/322 (30%), Positives = 157/322 (48%), Gaps = 31/322 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + WL +L+ R S TL Y D + A + T IRQ +++ Sbjct: 9 EQWLAHLQGHRRYSIHTLSGYRQDLHHLIQCHADLKLDHCTESHIRQA--------VARL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q + RSL R+L+ + F ++ + + + +R K SLP+AL+ +Q L+ Sbjct: 61 HGQGLQPRSLARALAAWRGFFQWWAPQAGMESNPVAGVRAPKIPRSLPKALSVEQTQVLL 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI------------MDDQS 186 D L ID R+ A+ +LY GLR++E +SL + +D+Q Sbjct: 121 DRPQLPAPDTA--IDCRDQAMFEVLYSSGLRLAELVSLDWRYARTGGYESQSWVQLDEQE 178 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKPLNPGV 242 + ++GKG K R VPL AI + L + + LF G RGK ++P V Sbjct: 179 AI-VKGKGGKTRNVPLGGKAIAAIQTWLQKRDQLLGGSSDPDTAAALFLGARGKRISPRV 237 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 Q + +L +GLP+ H+LRHSFA+H+L + DLR++Q +LGH +STTQIYT ++ Sbjct: 238 VQLQLNKLATLVGLPVHVHPHSLRHSFASHMLQSAQDLRAVQELLGHANISTTQIYTRLD 297 Query: 303 SKNGGDWMMEIYDQTHPSITQK 324 ++ + + YDQ HP +K Sbjct: 298 FQH----LAQAYDQAHPRAGRK 315 >gi|315163991|gb|EFU08008.1| tyrosine recombinase XerD [Enterococcus faecalis TX1302] Length = 296 Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 97/304 (31%), Positives = 163/304 (53%), Gaps = 20/304 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L L+IERGLS T +SYE D ++++ FL ++ + + ++ I F+ Sbjct: 7 DYLHYLQIERGLSNNTRRSYERDLKKYVAFL-----QEQGLHSWDEVDRYMITEFLQSLH 61 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 ++ S+ R +S ++ F ++L++ +++ + + ++ + KK LP L+ VD Sbjct: 62 EEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLS-------VD 114 Query: 140 NV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 V L+ T +K + RN AIL ++Y GLR+SE + + ++ L+ GKGDK Sbjct: 115 EVTRLIETPDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKE 174 Query: 198 RIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RI+PL + I Y + L N + LF G+PL+ + ++Q+ R Sbjct: 175 RIIPLGDYAIQWIQRYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREAQ 234 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + T HTLRHSFATHLL NG DLR +Q +LGH +STTQIYT++ + M ++Y Sbjct: 235 IEKNITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQR----MADVYK 290 Query: 316 QTHP 319 + P Sbjct: 291 EHFP 294 >gi|296112007|ref|YP_003622389.1| integrase/recombinase [Leuconostoc kimchii IMSNU 11154] gi|295833539|gb|ADG41420.1| integrase/recombinase [Leuconostoc kimchii IMSNU 11154] Length = 298 Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 91/301 (30%), Positives = 159/301 (52%), Gaps = 16/301 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L + IERGLS T++SY+ D +QF +++ T E + + + + I ++++ R Sbjct: 11 DYLHYIRIERGLSDNTIKSYQQDLKQFSVYM---TAENLNLNAV---DHVVILTWLNQLR 64 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + S+ R ++ ++ F YL + + + + +++ KK+ LP L+ + Sbjct: 65 ELNKSNNSVIRMVTSLRKFFGYLLQENVIRHNPMSDVKPPKKAEHLPAVLSVAEI----- 119 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + LL E + RN A++ ++Y GLR+SE ++L ++ ++ GKGDK RI Sbjct: 120 DALLQVPTEKTALGLRNRALIEVMYATGLRVSELVNLKMSDLHLQLGLIQTIGKGDKERI 179 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +P+ + + Y+ L + P +F RG L+ + I+ L G+ Sbjct: 180 IPIGEIATEWLERYFSHSRLTLLKDKVSPFVFLNDRGTQLSRQGVWKIIKNLVSAAGIDK 239 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + HTLRHSFATH+L NG DLR +Q +LGH +STTQIYT+++ K + E+YD H Sbjct: 240 DVSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISKKR----LSEVYDAFH 295 Query: 319 P 319 P Sbjct: 296 P 296 >gi|328952112|ref|YP_004369446.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109] gi|328452436|gb|AEB08265.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109] Length = 295 Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 102/302 (33%), Positives = 154/302 (50%), Gaps = 15/302 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + Q+L +ERGL+ LT+++Y D FL + T+ L + F++ Sbjct: 6 EQFFQHLIVERGLAPLTVEAYAHDLAGLRSFLTGLGRSRWDETTLEDLQF-----FLNHL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q +G RS R LS ++ ++L R+ TT N L + S LP+ L L V Sbjct: 61 EEQGVGPRSRARKLSAVRQLYRFLL-RQGTTSHNPLEWLD---SPKLPKGLPTVLGLEEV 116 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D LL T + R+ A+L LLY G+R+SE + LT + + + ++GKG K R Sbjct: 117 DR-LLAAPDPTTPLGQRDDAMLELLYATGMRVSELVGLTASQLDLRRGVVLVRGKGGKER 175 Query: 199 IVPL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 ++P+ + +V K L + P L LF G L F + ++ R GLP Sbjct: 176 LIPMVMRAVEKLQLYLQYVRPVLLKRQKTPELFLNRSGTGLTRQGFWKILKGYARQTGLP 235 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + HTLRHSFATHLL G DLR++Q +LGH +STTQIYT++++ + EI+ Q Sbjct: 236 KDLSPHTLRHSFATHLLWQGADLRALQLLLGHADISTTQIYTHLHTAR----LQEIHRQA 291 Query: 318 HP 319 HP Sbjct: 292 HP 293 >gi|29376101|ref|NP_815255.1| integrase/recombinase XerD, putative [Enterococcus faecalis V583] gi|227518728|ref|ZP_03948777.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis TX0104] gi|227553337|ref|ZP_03983386.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis HH22] gi|255975876|ref|ZP_05426462.1| phage integrase [Enterococcus faecalis T2] gi|256619040|ref|ZP_05475886.1| integrase [Enterococcus faecalis ATCC 4200] gi|256762466|ref|ZP_05503046.1| phage integrase [Enterococcus faecalis T3] gi|256958957|ref|ZP_05563128.1| integrase [Enterococcus faecalis DS5] gi|256961950|ref|ZP_05566121.1| phage integrase [Enterococcus faecalis Merz96] gi|256965148|ref|ZP_05569319.1| phage integrase [Enterococcus faecalis HIP11704] gi|257078988|ref|ZP_05573349.1| phage integrase [Enterococcus faecalis JH1] gi|257082573|ref|ZP_05576934.1| phage integrase [Enterococcus faecalis E1Sol] gi|257085206|ref|ZP_05579567.1| phage integrase [Enterococcus faecalis Fly1] gi|257086767|ref|ZP_05581128.1| phage integrase [Enterococcus faecalis D6] gi|257416070|ref|ZP_05593064.1| integrase [Enterococcus faecalis AR01/DG] gi|257419273|ref|ZP_05596267.1| phage integrase [Enterococcus faecalis T11] gi|293383018|ref|ZP_06628936.1| tyrosine recombinase XerD [Enterococcus faecalis R712] gi|293389493|ref|ZP_06633950.1| tyrosine recombinase XerD [Enterococcus faecalis S613] gi|294781340|ref|ZP_06746683.1| tyrosine recombinase XerD [Enterococcus faecalis PC1.1] gi|300860304|ref|ZP_07106391.1| tyrosine recombinase XerD [Enterococcus faecalis TUSoD Ef11] gi|307271041|ref|ZP_07552324.1| tyrosine recombinase XerD [Enterococcus faecalis TX4248] gi|307273248|ref|ZP_07554494.1| tyrosine recombinase XerD [Enterococcus faecalis TX0855] gi|307274985|ref|ZP_07556148.1| tyrosine recombinase XerD [Enterococcus faecalis TX2134] gi|307278097|ref|ZP_07559181.1| tyrosine recombinase XerD [Enterococcus faecalis TX0860] gi|312907511|ref|ZP_07766502.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 512] gi|312910129|ref|ZP_07768976.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 516] gi|29343563|gb|AAO81325.1| integrase/recombinase XerD, putative [Enterococcus faecalis V583] gi|227073809|gb|EEI11772.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis TX0104] gi|227177524|gb|EEI58496.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis HH22] gi|255968748|gb|EET99370.1| phage integrase [Enterococcus faecalis T2] gi|256598567|gb|EEU17743.1| integrase [Enterococcus faecalis ATCC 4200] gi|256683717|gb|EEU23412.1| phage integrase [Enterococcus faecalis T3] gi|256949453|gb|EEU66085.1| integrase [Enterococcus faecalis DS5] gi|256952446|gb|EEU69078.1| phage integrase [Enterococcus faecalis Merz96] gi|256955644|gb|EEU72276.1| phage integrase [Enterococcus faecalis HIP11704] gi|256987018|gb|EEU74320.1| phage integrase [Enterococcus faecalis JH1] gi|256990603|gb|EEU77905.1| phage integrase [Enterococcus faecalis E1Sol] gi|256993236|gb|EEU80538.1| phage integrase [Enterococcus faecalis Fly1] gi|256994797|gb|EEU82099.1| phage integrase [Enterococcus faecalis D6] gi|257157898|gb|EEU87858.1| integrase [Enterococcus faecalis ARO1/DG] gi|257161101|gb|EEU91061.1| phage integrase [Enterococcus faecalis T11] gi|291079683|gb|EFE17047.1| tyrosine recombinase XerD [Enterococcus faecalis R712] gi|291081110|gb|EFE18073.1| tyrosine recombinase XerD [Enterococcus faecalis S613] gi|294451570|gb|EFG20029.1| tyrosine recombinase XerD [Enterococcus faecalis PC1.1] gi|300849343|gb|EFK77093.1| tyrosine recombinase XerD [Enterococcus faecalis TUSoD Ef11] gi|306505494|gb|EFM74680.1| tyrosine recombinase XerD [Enterococcus faecalis TX0860] gi|306508433|gb|EFM77540.1| tyrosine recombinase XerD [Enterococcus faecalis TX2134] gi|306510233|gb|EFM79257.1| tyrosine recombinase XerD [Enterococcus faecalis TX0855] gi|306512539|gb|EFM81188.1| tyrosine recombinase XerD [Enterococcus faecalis TX4248] gi|310626539|gb|EFQ09822.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 512] gi|311289402|gb|EFQ67958.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 516] gi|315027289|gb|EFT39221.1| tyrosine recombinase XerD [Enterococcus faecalis TX2137] gi|315033946|gb|EFT45878.1| tyrosine recombinase XerD [Enterococcus faecalis TX0017] gi|315036955|gb|EFT48887.1| tyrosine recombinase XerD [Enterococcus faecalis TX0027] gi|315144440|gb|EFT88456.1| tyrosine recombinase XerD [Enterococcus faecalis TX2141] gi|315147241|gb|EFT91257.1| tyrosine recombinase XerD [Enterococcus faecalis TX4244] gi|315150560|gb|EFT94576.1| tyrosine recombinase XerD [Enterococcus faecalis TX0012] gi|315160468|gb|EFU04485.1| tyrosine recombinase XerD [Enterococcus faecalis TX0645] gi|315169058|gb|EFU13075.1| tyrosine recombinase XerD [Enterococcus faecalis TX1341] gi|315172335|gb|EFU16352.1| tyrosine recombinase XerD [Enterococcus faecalis TX1346] gi|315575890|gb|EFU88081.1| tyrosine recombinase XerD [Enterococcus faecalis TX0309B] gi|315580542|gb|EFU92733.1| tyrosine recombinase XerD [Enterococcus faecalis TX0309A] gi|323480700|gb|ADX80139.1| tyrosine recombinase XerD [Enterococcus faecalis 62] Length = 296 Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 97/304 (31%), Positives = 163/304 (53%), Gaps = 20/304 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L L+IERGLS T +SYE D ++++ FL ++ + + ++ I F+ Sbjct: 7 DYLHYLQIERGLSNNTRRSYERDLKKYVAFL-----QEQGLHSWDEVDRYMITEFLQSLH 61 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 ++ S+ R +S ++ F ++L++ +++ + + ++ + KK LP L+ VD Sbjct: 62 EEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLS-------VD 114 Query: 140 NV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 V L+ T +K + RN AIL ++Y GLR+SE + + ++ L+ GKGDK Sbjct: 115 EVTRLIETPDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKE 174 Query: 198 RIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RI+PL + I Y + L N + LF G+PL+ + ++Q+ R Sbjct: 175 RIIPLGDYAIQWIERYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREAQ 234 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + T HTLRHSFATHLL NG DLR +Q +LGH +STTQIYT++ + M ++Y Sbjct: 235 IEKNITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQR----MADVYK 290 Query: 316 QTHP 319 + P Sbjct: 291 EHFP 294 >gi|285019335|ref|YP_003377046.1| tyrosine recombinase [Xanthomonas albilineans GPE PC73] gi|283474553|emb|CBA17054.1| probable tyrosine recombinase protein [Xanthomonas albilineans] Length = 296 Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 96/308 (31%), Positives = 156/308 (50%), Gaps = 25/308 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +L L +ER +S TL +Y R+ L L + + + + L ++R FI+ Sbjct: 10 EFLAYLRVERRMSAHTLDAY----RRDLAALTTWAADNLLGEPA-ALGAEQLRQFIAAEH 64 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + + +SL+R LS +SF +L K S +R K LP+ L+ +A+ LV+ Sbjct: 65 RRGLSPKSLQRRLSACRSFYVWLLKHGHIEASPAAALRAPKAPRKLPQVLDADEAVRLVE 124 Query: 140 ---NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 +V L R+ A+L L Y GLR+SE +L +++ + + GKG K Sbjct: 125 VPTDVPL---------GLRDRALLELFYSSGLRLSELCALRWRDLDAASGLVSVHGKGGK 175 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 R+VP+ RKA+ E+ + + + P+F G G P+ Q I+QL GL Sbjct: 176 QRLVPIGSHARKALSEWRE----EHCADAAAPVFPGRGGVPIGARAVQIRIKQLAARQGL 231 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 H LRHSFA+H+L + GDLR +Q +LGH ++TTQIYT+++ ++ + ++YD Sbjct: 232 FKHVHPHMLRHSFASHILESSGDLRGVQELLGHADIATTQIYTHLDFQH----LAKVYDA 287 Query: 317 THPSITQK 324 HP +K Sbjct: 288 AHPRAKRK 295 >gi|15600473|ref|NP_253967.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa PAO1] gi|254238023|ref|ZP_04931346.1| site-specific recombinase Sss [Pseudomonas aeruginosa C3719] gi|34222782|sp|Q51566|XERC_PSEAE RecName: Full=Tyrosine recombinase xerC gi|9951593|gb|AAG08665.1|AE004940_9 site-specific recombinase Sss [Pseudomonas aeruginosa PAO1] gi|126169954|gb|EAZ55465.1| site-specific recombinase Sss [Pseudomonas aeruginosa C3719] Length = 303 Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 102/309 (33%), Positives = 156/309 (50%), Gaps = 27/309 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L++L ER +S TL Y R L LA EK + L +R F+++ Sbjct: 8 FLEHLRSERQVSAHTLDGYR---RDLLKILAL--AEKAGLSDWNALDTRSLRTFVARLHQ 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q RSL R LS + +YL + + K LPR L+ +AL L+D Sbjct: 63 QGQSSRSLARLLSATRGLYQYLLREGRCRHDPANGLSAPKSPRKLPRTLDADRALQLLDG 122 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + E +I R+ A+L L Y GLR+SE + L + + + +R++GKG+K+R + Sbjct: 123 AV-----EDDFIARRDQALLELFYSSGLRLSELVGLDLEWLDLKEGLVRVRGKGNKVREL 177 Query: 201 PLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR-RYLG 255 P+ + R+A+ + L P D +F G GK L P Q +RQ R LG Sbjct: 178 PVGKAARQALEAWLPLRTQAAPEDG------AVFIGRSGKRLTPRAIQLRVRQAGVRELG 231 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 L H LRHSFA+HLL + GDLR++Q +LGH ++TTQIYT+++ ++ + +YD Sbjct: 232 QHLHP--HMLRHSFASHLLESSGDLRAVQELLGHADIATTQIYTHLDFQH----LASVYD 285 Query: 316 QTHPSITQK 324 + HP +K Sbjct: 286 RAHPRAKRK 294 >gi|119470495|ref|ZP_01613198.1| site-specific tyrosine recombinase XerD [Alteromonadales bacterium TW-7] gi|119446196|gb|EAW27473.1| site-specific tyrosine recombinase XerD [Alteromonadales bacterium TW-7] Length = 308 Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 92/301 (30%), Positives = 158/301 (52%), Gaps = 17/301 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L +L +E+G+S+ TL +Y D +F FL + + ++ +I ++++ R Sbjct: 23 ETFLDSLYLEQGVSENTLSAYRSDLDKFCQFLKG--------ENLMTVTGHDIESYLAHR 74 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + RS RS+S +K F +Y + K+ T++ +LN+ K SLP+ L+E + Sbjct: 75 VDLGLKPRSTARSISALKRFYQYFVREKMITDTPMLNIAQPKAGQSLPKTLSETEV---- 130 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL+ + + + R+ A+L LLY GLR+SE + L + I Q+ + ++GKG+K R Sbjct: 131 -EALLNAPNTEEPMGLRDKAMLELLYATGLRVSELVGLRMEQINLRQAVVFVKGKGNKER 189 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +VPL + + + + + +F RG + F I+ + Sbjct: 190 LVPLGEEAMHWLELFLKVGRAQMIKHATDFVFPSKRGVGMTRQTFWHRIKHYAILASVES 249 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + + ++ Q H Sbjct: 250 PLSPHTLRHAFATHLLNHGADLRVVQMMLGHSDLSTTQIYTHV----ANERLKSVHAQHH 305 Query: 319 P 319 P Sbjct: 306 P 306 >gi|47568147|ref|ZP_00238851.1| integrase/recombinase XerD [Bacillus cereus G9241] gi|222097540|ref|YP_002531597.1| site-specific tyrosine recombinase xerd [Bacillus cereus Q1] gi|47555137|gb|EAL13484.1| integrase/recombinase XerD [Bacillus cereus G9241] gi|221241598|gb|ACM14308.1| integrase/recombinase (tyrosine recombinase) [Bacillus cereus Q1] Length = 285 Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 94/296 (31%), Positives = 156/296 (52%), Gaps = 18/296 (6%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 +E+GL+K T+ SYE D + ++ +L + K + +++ I F+ + + Sbjct: 3 VEKGLAKNTVVSYERDLKSYVKYLQNVEQAK----SFHEVTRLHIVNFLQHLKENGKSSK 58 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--LLH 144 +L R ++ I+SF ++L + + +++ + LP+ L+ VD V LL Sbjct: 59 TLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLS-------VDEVEALLQ 111 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 T T R+ A+L LLY GLR+SE ++L +++ +R GKG+K RI+PL Sbjct: 112 TPKMTSAFGVRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGS 171 Query: 205 SVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 +AI +Y + +L + LF G L+ F + +++L + + T H Sbjct: 172 LATEAIQKYIEKGRRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPH 231 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 TLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V+ + ++Y Q HP Sbjct: 232 TLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKDVYKQFHP 283 >gi|118579574|ref|YP_900824.1| tyrosine recombinase XerD [Pelobacter propionicus DSM 2379] gi|118502284|gb|ABK98766.1| tyrosine recombinase XerD subunit [Pelobacter propionicus DSM 2379] Length = 295 Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 98/300 (32%), Positives = 155/300 (51%), Gaps = 15/300 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L + +ERGL+ T Q+Y D ++L FLA + + +++ +I +F+ + R Sbjct: 8 FLGYIAVERGLATNTRQAYSRDLGRYLDFLAERGKNEPA-----EVTAADIASFLVRLRD 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + S R LS I+ F K+L K ++ + + + LP L + VD Sbjct: 63 EGLAPASRARCLSAIRMFHKFLMIEKYCDDNPSAILEAPRTLHKLPAFLEPAE----VDR 118 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 L T D R+ A+L LLY GLR+SE +++T + + D L + GKGDK R+V Sbjct: 119 -LFSACAGTSGEDLRDRAMLELLYATGLRVSELVTITLRQVNLDVGYLMVVGKGDKERLV 177 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ S R + Y + + L+ + P LF G ++ F IR+ + + Sbjct: 178 PIGESARGRVRRYIEEARYRLDPQGRTPHLFLSRLGDAMSRQAFWNLIRKRAKLAAIAKD 237 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRHSFATHLL NG DLRS+Q +LGH LS+TQIYT+V + + ++ + HP Sbjct: 238 ISPHTLRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVTRER----LKRLHQEIHP 293 >gi|147677545|ref|YP_001211760.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI] gi|146273642|dbj|BAF59391.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI] Length = 295 Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 91/302 (30%), Positives = 159/302 (52%), Gaps = 15/302 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + ++ +L +ERGLS+ TL SY D +F+ F A K ++++ Q + A++ + Sbjct: 6 EEFIYHLAVERGLSENTLVSYRADLAKFISFCA-----KAGLKSVEQAGRDTVMAYLFQL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + ++ R L+ I++F ++ I ++ K + LPR L+ ++ Sbjct: 61 QLDGRSTATISRHLASIRAFYRFAVGEGILPADPSSDLETPKPAQKLPRVLSVEEV---- 116 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 ++L+ + R+ A+L LLY G+R+SE +SL +++ + +R GKG + R Sbjct: 117 -DLLMGQPGSGEPAGLRDKAMLELLYATGMRVSELVSLNLEHVNLENGFVRCLGKGSRER 175 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 I+P+ + + EY + + L+ + LF G+ L F + I++ R + Sbjct: 176 IIPVGDVAVRWLKEYLERARYKLSKPGRTDALFVNQHGRRLTRQGFWKIIKKYARKAKIK 235 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T HTLRHSFATHLL NG DLRS+Q +LGH +STTQIYT++ + ++Y++T Sbjct: 236 KVITPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHLTRNR----LRDVYNRT 291 Query: 318 HP 319 HP Sbjct: 292 HP 293 >gi|319649574|ref|ZP_08003730.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2] gi|317398736|gb|EFV79418.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2] Length = 300 Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 88/301 (29%), Positives = 160/301 (53%), Gaps = 16/301 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +++ L+IE+ S+ T++ Y+ D +F +F+A + I + +++Y ++R ++++ Sbjct: 12 FIEYLQIEKNYSQYTIEHYQHDISEFFMFMA-----EQAIADLTKVAYQDVRIYLTELYD 66 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 +K+ +S+ R +S ++SF K+L + + E+ + K LP E + + L + Sbjct: 67 KKMSRKSVARKISSLRSFFKFLLREEKVAENPFALVSIPKAQKKLPEFFYEAEMMQLFNA 126 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 T + RN A+L LLY G+R+SE + +++ ST+ ++GKG K R V Sbjct: 127 CEASTP-----LGQRNKALLELLYATGIRVSECSQIRLKDLDMYLSTVLVRGKGSKERYV 181 Query: 201 PLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 P + A+ Y + L N N+Q LF RG PL + + ++ L Sbjct: 182 PFGSFAQDALDTYINHGREKLLANGNVQENLFLNARGGPLTARGIRTILDRIIEKSSLTG 241 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 H LRH+FATHL++NG D+R++Q +LGH LS+TQ+YT+V + +++ + Y H Sbjct: 242 KIHPHMLRHTFATHLMANGADMRTVQELLGHAFLSSTQVYTHVTN----EYLKKTYMAHH 297 Query: 319 P 319 P Sbjct: 298 P 298 >gi|107104381|ref|ZP_01368299.1| hypothetical protein PaerPA_01005457 [Pseudomonas aeruginosa PACS2] gi|116053429|ref|YP_793754.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa UCBPP-PA14] gi|218894383|ref|YP_002443253.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa LESB58] gi|254243833|ref|ZP_04937155.1| site-specific recombinase Sss [Pseudomonas aeruginosa 2192] gi|296392138|ref|ZP_06881613.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa PAb1] gi|313106696|ref|ZP_07792914.1| site-specific recombinase [Pseudomonas aeruginosa 39016] gi|122256552|sp|Q02E82|XERC_PSEAB RecName: Full=Tyrosine recombinase xerC gi|254799351|sp|B7V5H1|XERC_PSEA8 RecName: Full=Tyrosine recombinase xerC gi|115588650|gb|ABJ14665.1| site-specific recombinase [Pseudomonas aeruginosa UCBPP-PA14] gi|126197211|gb|EAZ61274.1| site-specific recombinase Sss [Pseudomonas aeruginosa 2192] gi|218774612|emb|CAW30429.1| site-specific recombinase Sss [Pseudomonas aeruginosa LESB58] gi|310879416|gb|EFQ38010.1| site-specific recombinase [Pseudomonas aeruginosa 39016] Length = 303 Score = 142 bits (357), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 102/309 (33%), Positives = 156/309 (50%), Gaps = 27/309 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L++L ER +S TL Y R L LA EK + L +R F+++ Sbjct: 8 FLEHLRSERQVSAHTLDGYR---RDLLKILAL--AEKAGLSDWNALDTRSLRTFVARLHQ 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q RSL R LS + +YL + + K LPR L+ +AL L+D Sbjct: 63 QGQSSRSLARLLSATRGLYQYLLREGRCRHDPANGLSAPKSPRKLPRTLDADRALQLLDG 122 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + E +I R+ A+L L Y GLR+SE + L + + + +R++GKG+K+R + Sbjct: 123 AV-----EDDFIARRDQALLELFYSSGLRLSELVGLDLEWLDLKEGLVRVRGKGNKVREL 177 Query: 201 PLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR-RYLG 255 P+ + R+A+ + L P D +F G GK L P Q +RQ R LG Sbjct: 178 PVGKAARQALEAWLPLRAQAAPEDG------AVFIGRGGKRLTPRAIQLRVRQAGVRELG 231 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 L H LRHSFA+HLL + GDLR++Q +LGH ++TTQIYT+++ ++ + +YD Sbjct: 232 QHLHP--HMLRHSFASHLLESSGDLRAVQELLGHADIATTQIYTHLDFQH----LASVYD 285 Query: 316 QTHPSITQK 324 + HP +K Sbjct: 286 RAHPRAKRK 294 >gi|229550039|ref|ZP_04438764.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis ATCC 29200] gi|255972820|ref|ZP_05423406.1| phage integrase [Enterococcus faecalis T1] gi|257089862|ref|ZP_05584223.1| phage integrase [Enterococcus faecalis CH188] gi|257422642|ref|ZP_05599632.1| phage integrase [Enterococcus faecalis X98] gi|312951470|ref|ZP_07770366.1| tyrosine recombinase XerD [Enterococcus faecalis TX0102] gi|229304845|gb|EEN70841.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis ATCC 29200] gi|255963838|gb|EET96314.1| phage integrase [Enterococcus faecalis T1] gi|256998674|gb|EEU85194.1| phage integrase [Enterococcus faecalis CH188] gi|257164466|gb|EEU94426.1| phage integrase [Enterococcus faecalis X98] gi|310630436|gb|EFQ13719.1| tyrosine recombinase XerD [Enterococcus faecalis TX0102] gi|315152507|gb|EFT96523.1| tyrosine recombinase XerD [Enterococcus faecalis TX0031] gi|315155785|gb|EFT99801.1| tyrosine recombinase XerD [Enterococcus faecalis TX0043] gi|315158048|gb|EFU02065.1| tyrosine recombinase XerD [Enterococcus faecalis TX0312] gi|315577730|gb|EFU89921.1| tyrosine recombinase XerD [Enterococcus faecalis TX0630] gi|327535109|gb|AEA93943.1| tyrosine recombinase XerD [Enterococcus faecalis OG1RF] Length = 296 Score = 142 bits (357), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 97/304 (31%), Positives = 163/304 (53%), Gaps = 20/304 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L L+IERGLS T +SYE D ++++ FL ++ + + ++ I F+ Sbjct: 7 DYLHYLQIERGLSNNTRRSYERDLKKYVAFL-----QEQGLHSWDEVDRYMITEFLQSLH 61 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 ++ S+ R +S ++ F ++L++ +++ + + ++ + KK LP L+ VD Sbjct: 62 EEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLS-------VD 114 Query: 140 NV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 V L+ T +K + RN AIL ++Y GLR+SE + + ++ L+ GKGDK Sbjct: 115 EVTRLIETPDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKE 174 Query: 198 RIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RI+PL + I Y + L N + LF G+PL+ + ++Q+ R Sbjct: 175 RIIPLGDYAIQWIERYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREAR 234 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + T HTLRHSFATHLL NG DLR +Q +LGH +STTQIYT++ + M ++Y Sbjct: 235 IEKNITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQR----MADVYK 290 Query: 316 QTHP 319 + P Sbjct: 291 EHFP 294 >gi|193214435|ref|YP_001995634.1| integrase family protein [Chloroherpeton thalassium ATCC 35110] gi|193087912|gb|ACF13187.1| integrase family protein [Chloroherpeton thalassium ATCC 35110] Length = 336 Score = 142 bits (357), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 102/325 (31%), Positives = 163/325 (50%), Gaps = 33/325 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFL----AFYTEEKITIQTIRQLSYTEIRAFIS 76 +L+ L ER +S T+ +Y D QFL FL + + I++ + + IR F+ Sbjct: 17 FLKYLANERNMSAYTVTAYRKDLSQFLEFLKKEFELPSSQDISLADVET---STIRLFLG 73 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + +S+ R L+ +KSF K+L S N+ K +LP LNE Q T Sbjct: 74 ELLDAGYQSKSIGRKLASVKSFFKFLVYINHLPASPAANVTTPKAKKTLPTFLNETQTQT 133 Query: 137 LVDNVLLH-----------TSHET----KWI--DARNSAILYLLYGCGLRISEALSLTPQ 179 L D +L H HE +W R+ AIL + Y CGLR++E + L Sbjct: 134 LFDEILDHFNEAFYHDNRAKKHEKVNTLEWDFRYNRDRAILEMFYSCGLRLAELIGLNIM 193 Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP--FDL---NLNIQLPLFRGIR 234 + +++ GKG K RI+PL S +K + Y ++ F++ N+ + +F + Sbjct: 194 ELDFQNGFVKVLGKGRKQRIIPLGESAQKTLKNYLEIKKKFFEMKRSNVLEREAVFVTEK 253 Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 GK + P + QR +++ + + H LRH+FATHLL+NG DLRS+ +LGH LST Sbjct: 254 GKRVYPVLVQRLVKKYLSPVTEQKKKSPHVLRHTFATHLLNNGADLRSVSEMLGHSNLST 313 Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHP 319 T+IYT+++ + + ++Y Q HP Sbjct: 314 TEIYTHISF----ERLKQVYQQAHP 334 >gi|312962849|ref|ZP_07777336.1| integrase/recombinase XerD [Pseudomonas fluorescens WH6] gi|311282876|gb|EFQ61470.1| integrase/recombinase XerD [Pseudomonas fluorescens WH6] Length = 298 Score = 142 bits (357), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 102/308 (33%), Positives = 158/308 (51%), Gaps = 32/308 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISKRR 79 +L L +E+GLS T Q+Y D +F + E+ + I R+L I ++ R Sbjct: 12 FLDALWLEKGLSDNTRQAYRSD---LALFNGWLQEKHLELINAGREL----ILDHLAWRL 64 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q RS R LSG++ F +YL + K+ T L + + LP++L+E Sbjct: 65 EQNYKPRSTARFLSGVRGFYRYLLREKLITLDPTLQIDMPQLGRPLPKSLSEADV----- 119 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 LL ++ I R+ A+L +LY CGLR++E +SLT + + Q LR+ GKG K R+ Sbjct: 120 EALLAAPDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERL 179 Query: 200 VPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 VP+ +R+A E P D+ LF +RG+ + F I+ Sbjct: 180 VPMGEEAIVWVERYMREARSELLGGRPSDV-------LFPSLRGEQMTRQTFWHRIKHQA 232 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 + G+ + + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + Sbjct: 233 KVAGIGKTLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----LQ 288 Query: 312 EIYDQTHP 319 +++ + HP Sbjct: 289 DMHAKHHP 296 >gi|256003998|ref|ZP_05428984.1| tyrosine recombinase XerD [Clostridium thermocellum DSM 2360] gi|281417393|ref|ZP_06248413.1| tyrosine recombinase XerD [Clostridium thermocellum JW20] gi|255992126|gb|EEU02222.1| tyrosine recombinase XerD [Clostridium thermocellum DSM 2360] gi|281408795|gb|EFB39053.1| tyrosine recombinase XerD [Clostridium thermocellum JW20] gi|316940575|gb|ADU74609.1| tyrosine recombinase XerD [Clostridium thermocellum DSM 1313] Length = 294 Score = 142 bits (357), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 103/304 (33%), Positives = 159/304 (52%), Gaps = 22/304 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L L+ ++ LS TLQSY+ D Q++ +L + + IQ I + T + A++ + Sbjct: 7 HFLDFLKNDKRLSLNTLQSYKRDIEQYITYL-----KDMKIQNIANTNKTTVIAYLLHLQ 61 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + ++ R+L+ I+SF +YL K+ I ++ N+ + K LP+ L+ K+ Sbjct: 62 KKGRATSTISRNLASIRSFYQYLTKKGIISQDPTENLESPKVEKKLPQILSTKEV----- 116 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 +LL R+ A+L LLY G+R+SE +SL ++ + +R KG + RI Sbjct: 117 ELLLEQPKCDDLKGYRDKAMLELLYATGIRVSELISLDLDDVNLEMQYIRC-NKGARERI 175 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLG 255 VP+ A+ EY NL IQ P LF + GK L F + I+Q + Sbjct: 176 VPIGSVSVNALQEY---LTKSRNLLIQRPDEKALFVNVNGKRLTRQGFWKIIKQYKNQAK 232 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + T HTLRHSFA HLL NG DLRSIQ +LGH +S+TQIY + + + EIY Sbjct: 233 INKDITPHTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQIYAQL----AKNRIKEIYK 288 Query: 316 QTHP 319 +THP Sbjct: 289 KTHP 292 >gi|119478678|ref|ZP_01618568.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143] gi|119448404|gb|EAW29656.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143] Length = 300 Score = 142 bits (357), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 99/301 (32%), Positives = 165/301 (54%), Gaps = 18/301 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L + +ERG+S+ TL SY D QF +L +++ T+ +R+ +I A+++ R Sbjct: 14 FLDGIWMERGVSENTLSSYRQDLMQFNQWL---LDQQTTMLAVRK---NDIEAYLAFRLM 67 Query: 81 QKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 +KI RS R LS ++ F +Y L++ +I+ + L++ + K LP++L+E+ Sbjct: 68 RKISARSTARLLSCLRGFYQYQLRESRISLDPT-LDIDSPKMGRPLPKSLSEQDV----- 121 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 LL+ + ++ R+ A+L LLY GLR++E ++L + +Q +R+ GKG K R+ Sbjct: 122 EALLNAPDTDEPLELRDKAMLELLYASGLRVTELITLQVGQLSVNQGVVRVMGKGSKERL 181 Query: 200 VPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VP + Y D P L + +F RG + F I+ + G+ Sbjct: 182 VPTGEEALDWLQRYMKDGRPALLGARMSDTMFPSRRGAVMTRQTFWYRIKIYAQRAGIRQ 241 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 S + HTLRH+FATHL+++G DLR +Q +LGH LSTTQIYT+V + M +++ Q H Sbjct: 242 SLSPHTLRHAFATHLINHGADLRVVQLLLGHSDLSTTQIYTHVAKER----MKDLHAQHH 297 Query: 319 P 319 P Sbjct: 298 P 298 >gi|289432900|ref|YP_003462773.1| tyrosine recombinase XerD [Dehalococcoides sp. GT] gi|288946620|gb|ADC74317.1| tyrosine recombinase XerD [Dehalococcoides sp. GT] Length = 302 Score = 142 bits (357), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 92/302 (30%), Positives = 154/302 (50%), Gaps = 9/302 (2%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q++L L +E+G S+ T ++YE D RQ F + I + + A++ Sbjct: 6 QSFLNYLMVEKGFSENTSEAYENDLRQMTTFADKEAAKSGKIPGWDNFTRQTMLAYMLDL 65 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + ++ R ++ KSF ++ E+ N+ K LP A++ Q L+ Sbjct: 66 KERNYAITTVVRKMAAAKSFFNFMVAEGKLKENPTENISTPKVGKPLPDAISISQVRALL 125 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + + S E K R+ A+L LLY G+R++E ++L ++ + +R GKG K R Sbjct: 126 NQPVKSGSSEAK----RDKAMLELLYASGMRVTELVNLNMLDVDLKEGFVRCFGKGRKER 181 Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 ++P+ P +++ EY ++ P + + LF RG L + ++ R GL Sbjct: 182 MIPIYPQAAQSVQEYLNEIRPNLVRAEAEKALFLNRRGDRLTRQGLWQILKAYAREAGLD 241 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T HTLRHSFATH+LS G DLRS+Q +LGH +STTQIYT++ S++ + Y++ Sbjct: 242 DVVTPHTLRHSFATHMLSGGADLRSVQELLGHANISTTQIYTHLTSEH----IRRSYEKA 297 Query: 318 HP 319 HP Sbjct: 298 HP 299 >gi|229134899|ref|ZP_04263706.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST196] gi|228648574|gb|EEL04602.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST196] Length = 296 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 93/304 (30%), Positives = 161/304 (52%), Gaps = 18/304 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++++ + +E+GL+K T+ SYE D + ++ +L + K T +++ I F+ Sbjct: 6 KDFIHYMIVEKGLAKNTVVSYERDLKSYVKYLQNVEQTK----TFHEVTRLHIVNFLQHL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + ++L R ++ I+SF ++L + + +++ + LP+ L+ + Sbjct: 62 KENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLS-------I 114 Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 D V LL T+ R+ A+L LLY GLR+SE ++L +++ +R GKG+K Sbjct: 115 DEVEALLQTTKTASAFGIRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNK 174 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RI+PL +AI +Y + +L + LF G L+ F + +++L + Sbjct: 175 ERIIPLGSLATEAIQKYIEKGRRELMGKKAVDALFLNHHGNRLSRQGFWKILKRLAKEAN 234 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V+ + ++Y Sbjct: 235 IAKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKDVYK 290 Query: 316 QTHP 319 Q HP Sbjct: 291 QFHP 294 >gi|125973194|ref|YP_001037104.1| tyrosine recombinase XerD subunit [Clostridium thermocellum ATCC 27405] gi|125713419|gb|ABN51911.1| tyrosine recombinase XerD subunit [Clostridium thermocellum ATCC 27405] Length = 296 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 103/304 (33%), Positives = 159/304 (52%), Gaps = 22/304 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L L+ ++ LS TLQSY+ D Q++ +L + + IQ I + T + A++ + Sbjct: 9 HFLDFLKNDKRLSLNTLQSYKRDIEQYITYL-----KDMKIQNIANTNKTTVIAYLLHLQ 63 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + ++ R+L+ I+SF +YL K+ I ++ N+ + K LP+ L+ K+ Sbjct: 64 KKGRATSTISRNLASIRSFYQYLTKKGIISQDPTENLESPKVEKKLPQILSTKEV----- 118 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 +LL R+ A+L LLY G+R+SE +SL ++ + +R KG + RI Sbjct: 119 ELLLEQPKCDDLKGYRDKAMLELLYATGIRVSELISLDLDDVNLEMQYIRC-NKGARERI 177 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLG 255 VP+ A+ EY NL IQ P LF + GK L F + I+Q + Sbjct: 178 VPIGSVSVNALQEY---LTKSRNLLIQRPDEKALFVNVNGKRLTRQGFWKIIKQYKNQAK 234 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + T HTLRHSFA HLL NG DLRSIQ +LGH +S+TQIY + + + EIY Sbjct: 235 INKDITPHTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQIYAQL----AKNRIKEIYK 290 Query: 316 QTHP 319 +THP Sbjct: 291 KTHP 294 >gi|193078105|gb|ABO13046.2| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC 17978] Length = 308 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 100/314 (31%), Positives = 174/314 (55%), Gaps = 32/314 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL+ +I+ S+ T+ +Y+ D + FL F +K+ + R + +++R ++++R Sbjct: 15 WLKERKIQ-NQSEHTITAYKRDVKSFLEFCEL---KKVDL---RNVEASDLREYLAQRVE 67 Query: 81 Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q ++ S++R L+ I+ F+K+ ++ K E N + LK+ PR L + +V+ Sbjct: 68 QDQLSSSSMQRHLTSIRQFMKWAEQGKYL-EINPTDDFKLKRQ---PRPLPGMIDIEMVN 123 Query: 140 NVLLHTSHETK-----WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 +L E W+ R+ A+L LLY GLR++E LT ++I ++ +RI GKG Sbjct: 124 QILDQPMPEKPVDQQLWL--RDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKG 181 Query: 195 DKIRIVPLLPSVRKAILEY---YDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 +K RIVP ++++L + Y++ FD N ++ F RG L P ++ ++ Sbjct: 182 NKTRIVPFGKKAKESLLNWLKIYNIWKGHFDQNASV----FISQRGGALTPRQIEKRVKL 237 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 + G+ + H LRH FA+H+LS+ GDLRS+Q +LGH LSTTQIYT+++ D Sbjct: 238 QAQRAGVNVDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDF----DH 293 Query: 310 MMEIYDQTHPSITQ 323 + ++YDQ HP T+ Sbjct: 294 LAQVYDQAHPRATK 307 >gi|73748904|ref|YP_308143.1| tyrosine recombinase XerD [Dehalococcoides sp. CBDB1] gi|147669665|ref|YP_001214483.1| tyrosine recombinase XerD subunit [Dehalococcoides sp. BAV1] gi|73660620|emb|CAI83227.1| tyrosine recombinase XerD [Dehalococcoides sp. CBDB1] gi|146270613|gb|ABQ17605.1| tyrosine recombinase XerD subunit [Dehalococcoides sp. BAV1] Length = 302 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 92/302 (30%), Positives = 154/302 (50%), Gaps = 9/302 (2%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q++L L +E+G S+ T ++YE D RQ F + I + + A++ Sbjct: 6 QSFLNYLMVEKGFSENTSEAYENDLRQMTTFADKEAAKSGKIPGWDNFTRQTMLAYMLDL 65 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + ++ R ++ KSF ++ E+ N+ K LP A++ Q L+ Sbjct: 66 KERNYAITTVVRKMAAAKSFFNFMVAEGKLKENPTENISTPKVGKPLPDAISISQVRALL 125 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + + S E K R+ A+L LLY G+R++E ++L ++ + +R GKG K R Sbjct: 126 NQPIKSGSSEAK----RDKAMLELLYASGMRVTELVNLNMLDVDLKEGFVRCFGKGRKER 181 Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 ++P+ P +++ EY ++ P + + LF RG L + ++ R GL Sbjct: 182 MIPIYPQAAQSVQEYLNEIRPNLVRAEAEKALFLNRRGDRLTRQGLWQILKAYAREAGLD 241 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T HTLRHSFATH+LS G DLRS+Q +LGH +STTQIYT++ S++ + Y++ Sbjct: 242 DVVTPHTLRHSFATHMLSGGADLRSVQELLGHANISTTQIYTHLTSEH----IRRSYEKA 297 Query: 318 HP 319 HP Sbjct: 298 HP 299 >gi|293374710|ref|ZP_06621018.1| tyrosine recombinase XerC [Turicibacter sanguinis PC909] gi|325840598|ref|ZP_08167079.1| tyrosine recombinase XerC [Turicibacter sp. HGF1] gi|292646624|gb|EFF64626.1| tyrosine recombinase XerC [Turicibacter sanguinis PC909] gi|325490247|gb|EGC92580.1| tyrosine recombinase XerC [Turicibacter sp. HGF1] Length = 301 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 96/311 (30%), Positives = 165/311 (53%), Gaps = 21/311 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 ++ L+ E+ S+ TL +YE D +++ F ++ I + Y+++R++++ T Sbjct: 8 YMDYLKYEKRYSEHTLLNYERDVKEWFSFC-----QREGINEF-EFDYSDVRSYLNDCYT 61 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 ++ ++ R LS ++S+ ++L K K ++ L M+ KK+ +LP+ L E++ L D+ Sbjct: 62 HQLSRSTMSRKLSSLRSYYQFLLKEKQVKQNPFLIMKGPKKAETLPQFLYEEELQALFDS 121 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + +T + RN A+L LLYG G+R+SE + + + T+ I GKG K R V Sbjct: 122 I-----DQTSILGCRNYALLELLYGTGIRVSECCQMKQSQLNVELGTVLIHGKGGKDRYV 176 Query: 201 PLLPSVRKAILEYYDLCPFDL----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 P+ +AI Y L NL + LF G PL + + ++ Sbjct: 177 PIGEFAVEAIEAYLQRSRPQLLKKSNLETDV-LFLNHLGTPLTERGVRDILSRMTNQTAK 235 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H +RH+FATHLL+NG DLRS+Q +LGH LS+TQIYT+V+ ++ + + Y Sbjct: 236 HIKVAPHMIRHTFATHLLNNGADLRSVQELLGHENLSSTQIYTHVSKEH----LRQAYAL 291 Query: 317 THPSITQKDKK 327 HP +KD+K Sbjct: 292 AHPR-ARKDRK 301 >gi|261405985|ref|YP_003242226.1| integrase family protein [Paenibacillus sp. Y412MC10] gi|261282448|gb|ACX64419.1| integrase family protein [Paenibacillus sp. Y412MC10] Length = 294 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 99/301 (32%), Positives = 155/301 (51%), Gaps = 16/301 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++Q LE E+GLS+ T+ SY D + FL AF E ++T R+++ T + ++ + R Sbjct: 7 EYVQYLEDEKGLSRSTIASYRADLQGFL---AFAAEREVT--HPREVNRTLLGLYVGRLR 61 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q SL R + ++SF +YL ++ + + + N K P++L +Q VD Sbjct: 62 QQGKAASSLLRCTASLRSFFQYLVRQAVIVQDPTQLLDNPKPERKPPKSLTVEQ----VD 117 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 +L T AR+ A+L LLY G+++SE ++L+ +I + LR G K RI Sbjct: 118 KLLSAPDSGTPQ-GARDKAMLELLYASGIKVSELVNLSIHDIHLEMRFLRCAVSGGKERI 176 Query: 200 VPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +P+ P +++ Y D+ + + LF G L F + I++ + G+ Sbjct: 177 LPITPIAAESVAFYVRDMRDKLMRDAGEDALFLNSLGTRLTRQGFWKIIKKYGKLAGIDE 236 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 T HTLRHSFA HLL NG DLRS+Q +LGH LSTT +Y + M E+YD H Sbjct: 237 DITPHTLRHSFAMHLLGNGADLRSVQEMLGHSALSTTGMYQSAKKS-----MKEVYDHYH 291 Query: 319 P 319 P Sbjct: 292 P 292 >gi|229545847|ref|ZP_04434572.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis TX1322] gi|256853102|ref|ZP_05558472.1| phage integrase [Enterococcus faecalis T8] gi|307292019|ref|ZP_07571888.1| tyrosine recombinase XerD [Enterococcus faecalis TX0411] gi|229309046|gb|EEN75033.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis TX1322] gi|256711561|gb|EEU26599.1| phage integrase [Enterococcus faecalis T8] gi|306497017|gb|EFM66565.1| tyrosine recombinase XerD [Enterococcus faecalis TX0411] gi|315029408|gb|EFT41340.1| tyrosine recombinase XerD [Enterococcus faecalis TX4000] Length = 296 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 96/299 (32%), Positives = 160/299 (53%), Gaps = 16/299 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L L+IERGLS T +SYE D ++++ FL ++ + + ++ I F+ Sbjct: 7 DYLHYLQIERGLSNNTRRSYERDLKKYVAFL-----QEQGLHSWDEVDRYMITEFLQSLH 61 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 ++ S+ R +S ++ F ++L++ +++ + + ++ + KK LP L+ VD Sbjct: 62 EEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKIQKLPSTLS-------VD 114 Query: 140 NV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 V L+ T +K + RN AIL ++Y GLR+SE + + ++ L+ GKGDK Sbjct: 115 EVTRLIETPDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKE 174 Query: 198 RIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RI+PL + I Y + L N + LF G+PL+ + ++Q+ R Sbjct: 175 RIIPLGDYAIQWIERYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREAQ 234 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 + + T HTLRHSFATHLL NG DLR +Q +LGH +STTQIYT++ + D E + Sbjct: 235 IEKNITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQRMADVYKEYF 293 >gi|160876749|ref|YP_001556065.1| tyrosine recombinase XerD [Shewanella baltica OS195] gi|160862271|gb|ABX50805.1| tyrosine recombinase XerD [Shewanella baltica OS195] Length = 309 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 102/300 (34%), Positives = 158/300 (52%), Gaps = 16/300 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +L +GLS TL +Y D R F + A ++ +T+ ++ Q ++RA+++ R Sbjct: 23 FLDDLWSNKGLSDNTLSAYRTDLRHFDRYQA---QQGVTLLSVSQ---ADVRAYLAFRVE 76 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q S R LS ++ F YL + K + + + + K + LP +L+E Q VD Sbjct: 77 QDFARTSSARLLSSLRRFYTYLVQTKQISADPMALVESPKLTRHLPDSLSESQ----VDR 132 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 +L + E ++ R+ A+L LLY GLR+SE + LT + + Q +RI GKG K R+V Sbjct: 133 LLSEPNVEDA-VECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLV 191 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 PL + Y +L N Q + F RG+ + F I+ G+ + Sbjct: 192 PLGELAITEVESYMKFARQELLGNKQSDVVFPSKRGQMMTRQTFWHRIKLYALRAGIETA 251 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + E++ Q HP Sbjct: 252 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARAR----LQELHQQHHP 307 >gi|288941805|ref|YP_003444045.1| tyrosine recombinase XerC [Allochromatium vinosum DSM 180] gi|288897177|gb|ADC63013.1| tyrosine recombinase XerC [Allochromatium vinosum DSM 180] Length = 320 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 93/309 (30%), Positives = 158/309 (51%), Gaps = 13/309 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L +L ER LS+ T+++Y D Q ++LA E + I L IR + + R Sbjct: 20 ERFLAHLAHERQLSEHTVRAYRHDLNQIAVWLADQGEP--GAEPIASLDEAGIRRYTAWR 77 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q + ++L+R LS ++ F ++L + + + +R K LP + Q L+ Sbjct: 78 HRQGVSGKTLQRELSSLRGFYRWLLRENQAVANPAVGLRAPKSPRKLPHTFDADQLGALL 137 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D V + + R++A++ L Y GLR++E +S+ +I + L + GKG K R Sbjct: 138 DPV------DEDPLMIRDTAMVELFYSSGLRLAELVSIDLGDIDMSEGELGVIGKGSKSR 191 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VP+ R+AI E + L + LF +RG ++P ++ + + G Sbjct: 192 RVPVGRKAREAI-ERWLAVRSALADRDERALFVSLRGGRIHPRTVEKRLARWAVERGASR 250 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 H LRHSFA+HLL + GDLR++Q +LGH + TTQIYT+++ ++ + ++YDQ H Sbjct: 251 HLHPHLLRHSFASHLLESSGDLRAVQELLGHTDIGTTQIYTHLDFQH----LAQVYDQAH 306 Query: 319 PSITQKDKK 327 P +K K Sbjct: 307 PRARKKASK 315 >gi|299137337|ref|ZP_07030519.1| integrase family protein [Acidobacterium sp. MP5ACTX8] gi|298600742|gb|EFI56898.1| integrase family protein [Acidobacterium sp. MP5ACTX8] Length = 317 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 95/317 (29%), Positives = 164/317 (51%), Gaps = 23/317 (7%) Query: 7 PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66 P I + LL+E ++ +L +ERGL L+ ++Y+ R +F F T+ T RQ Sbjct: 6 PTINAASLLRE---YMTHLRVERGLRPLSCEAYQ---RDLEMFAEFLEGANATLLTARQE 59 Query: 67 SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126 S + F+ R I RS+ R LS ++ F ++L K +N+ + LP Sbjct: 60 S---VSGFMQHLREHGIESRSVARKLSCLRGFYRWLLMDKRIPHDPTVNIESPSSWKVLP 116 Query: 127 RALNEKQALTLVDNV-LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 ++L E + +++ + S R+ AIL LLY GLR+ E +SL +++ + Sbjct: 117 KSLAETEVNEMLERTGVAARSDAADGASLRDHAILELLYAGGLRVGEIVSLRQEDLRLES 176 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGV 242 ++++++GKGDK RIVP+ S +A+ Y +L +Q LF +RG PL Sbjct: 177 ASVQVRGKGDKERIVPIGRSAIEALEAYVQRGRPELMRSKSGVQRTLFLSVRGNPLTTQK 236 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + +R + + + H LRHS ATH++ +G DLR++Q++LGH ++TTQ+YT++ Sbjct: 237 VWQMVRSVNSH------ASPHKLRHSCATHMVEHGADLRTVQTLLGHADIATTQVYTHL- 289 Query: 303 SKNGGDWMMEIYDQTHP 319 D + +++ HP Sbjct: 290 ---AIDRLKQVHRLHHP 303 >gi|307289082|ref|ZP_07569038.1| tyrosine recombinase XerD [Enterococcus faecalis TX0109] gi|306499791|gb|EFM69152.1| tyrosine recombinase XerD [Enterococcus faecalis TX0109] Length = 296 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 97/304 (31%), Positives = 163/304 (53%), Gaps = 20/304 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L L+IERGLS T +SYE D ++++ FL ++ + + ++ I F+ Sbjct: 7 DYLHYLQIERGLSNNTRRSYERDLKKYVDFL-----QEQGLHSWDEVDRYMITEFLQSLH 61 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 ++ S+ R +S ++ F ++L++ +++ + + ++ + KK LP L+ VD Sbjct: 62 EEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLS-------VD 114 Query: 140 NV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 V L+ T +K + RN AIL ++Y GLR+SE + + ++ L+ GKGDK Sbjct: 115 EVTRLIETPDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKE 174 Query: 198 RIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RI+PL + I Y + L N + LF G+PL+ + ++Q+ R Sbjct: 175 RIIPLGDYAIQWIQRYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREAQ 234 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + T HTLRHSFATHLL NG DLR +Q +LGH +STTQIYT++ + M ++Y Sbjct: 235 IEKNITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQR----MADVYK 290 Query: 316 QTHP 319 + P Sbjct: 291 EHFP 294 >gi|170703226|ref|ZP_02894029.1| tyrosine recombinase XerC [Burkholderia ambifaria IOP40-10] gi|170131859|gb|EDT00384.1| tyrosine recombinase XerC [Burkholderia ambifaria IOP40-10] Length = 306 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 94/318 (29%), Positives = 164/318 (51%), Gaps = 33/318 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L NL+ R LS+ TL++Y + + A + + L+ ++R +++ Sbjct: 9 YLSNLKHVRQLSEHTLRAYTHELDELKKLAAG--------RPLDTLTAVDMRGAVARAHA 60 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS+ LS ++F ++L +R + + +R K+ +LP+AL+ A L+D Sbjct: 61 GGLSARSIAHRLSAWRAFYRWLAQRIEMPANPVAAVRAPKRPKTLPKALSVDDASALMDA 120 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT----------PQNIMD-DQSTLR 189 L T+ R+ AIL L Y GLR++E + L +D D++ + Sbjct: 121 PLAGTTEGI-----RDHAILELFYSSGLRLAELIGLDVMYTQADGYRSAGWLDLDEAEVT 175 Query: 190 IQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 ++GKG+K R VP+ RKAI L + + + PLF +RG + PGV + + Sbjct: 176 VRGKGNKERKVPV---GRKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMAPGVVRERV 232 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 ++ G+P + H LRHSFATH+L + GDLR++Q +LGH +S TQ+YT+++ ++ Sbjct: 233 KRAALTAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYTSLDFQH-- 290 Query: 308 DWMMEIYDQTHPSITQKD 325 + +IYD HP ++D Sbjct: 291 --LAKIYDSAHPRAKKRD 306 >gi|254468110|ref|ZP_05081516.1| tyrosine recombinase XerD [beta proteobacterium KB13] gi|207086920|gb|EDZ64203.1| tyrosine recombinase XerD [beta proteobacterium KB13] Length = 298 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 99/300 (33%), Positives = 157/300 (52%), Gaps = 19/300 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 ++ +L +E GLSK TL SY D +Q I+ + IT I++ Y R +SK Sbjct: 15 FINSLWLEDGLSKNTLDSYRYDLKQLAIWYSNRDIAHITKSEIQE--YLAYRFPLSK--- 69 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 RS+ R L+ ++ F +YL + I E L + K S +LP++LNE + Sbjct: 70 ----SRSIARLLACLRRFYRYLVRENIIHEDPTLMIEAPKPSKALPKSLNENEV-----E 120 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LL+ + + R+ A+L LLY CGLR+SE +++ + + +RI GKGDK R+V Sbjct: 121 KLLNAPNISDDQGLRDRAMLELLYACGLRVSELITIMVTEVSLNDGVIRITGKGDKTRLV 180 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ I +Y +L + LF +RG + F I++ G+ + Sbjct: 181 PMGEEASHWIEQYLKSSRDNLLKEKKSKYLFVTLRGAAMTRQAFWYLIKRYAVASGIKHA 240 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H LRH+FATHLL++G DLR +Q +LGH +STTQIYT+V + + +++ + HP Sbjct: 241 ISPHVLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARER----LKDLHQKHHP 296 >gi|325982877|ref|YP_004295279.1| tyrosine recombinase XerC [Nitrosomonas sp. AL212] gi|325532396|gb|ADZ27117.1| tyrosine recombinase XerC [Nitrosomonas sp. AL212] Length = 297 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 98/313 (31%), Positives = 156/313 (49%), Gaps = 35/313 (11%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 ++ +L ER LS LT +SY D R L E + + Q+ IR I++ Sbjct: 12 YIDHLAYERRLSPLTCKSYARDIRVLL--------EHLGTDDLAQVQSPNIRQAIAQLHG 63 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL--- 137 + +G RSL R LS F +L ++ + +R K LP AL+ +A L Sbjct: 64 KGLGGRSLARMLSAWCGFYNFLIRKHGFQHNPCYAVRVPKSPQKLPHALSPDEATRLLQF 123 Query: 138 -VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 V+N+LL AR+SA+ L Y GLR++E L P+++ + T+R+ GKG K Sbjct: 124 PVENILL----------ARDSAMFELFYSSGLRLAELTHLRPEDVHFAEGTIRVLGKGGK 173 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRR 252 RIVP+ +I + L L I P LF RG ++ ++ R Sbjct: 174 ARIVPVGEYALHSITTW-----LALRLQIIKPNVTALFLSRRGDAISMRAIAYRLKSRAR 228 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 GL + H LRHSFA+H+L + GDLR++Q +LGH +++TQ+YT+++ ++ + + Sbjct: 229 QQGLHQNVHPHVLRHSFASHVLQSSGDLRAVQEMLGHAHITSTQVYTHLDFQH----LAK 284 Query: 313 IYDQTHPSITQKD 325 IYD HP +++ Sbjct: 285 IYDAAHPRAKKRN 297 >gi|56461653|ref|YP_156934.1| site-specific recombinase XerC [Idiomarina loihiensis L2TR] gi|56180663|gb|AAV83385.1| Site-specific recombinase XerC [Idiomarina loihiensis L2TR] Length = 300 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 96/308 (31%), Positives = 158/308 (51%), Gaps = 17/308 (5%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 +Q W+Q L+ ERGL++LTL++Y Q LI E I + L I + Sbjct: 7 QQKWMQQLQGERGLAELTLKNY-----QRLIAADLTALELQKITEPKALRVPVIERLLVG 61 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 R +G+RS+ LS ++F +++ + ++ +++ K LP+ L+ Sbjct: 62 WRRNGLGERSIALKLSAWRTFCQFMVESNAMDDNPAMSVSAPKIPKRLPKNLD------- 114 Query: 138 VDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 VD++ T A R++A++ LLY G+R++E +SL +I LR+ GKG K Sbjct: 115 VDSISHLLDLPTDDDLAIRDAAMMELLYASGIRLAELVSLDLDHIDHRMMQLRVTGKGSK 174 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 RIVP KA+ ++ + LN +L LF R + ++P Q+ + + G+ Sbjct: 175 TRIVPFGRCAEKALKKWLSVRQAWLNQKPELALFVSKRLQRISPRTVQQRLNYWGKQQGV 234 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 H LRHSFA+H+L + GDLR++Q +LGH LSTTQ+YT+++ K + +YD Sbjct: 235 VGDLHPHKLRHSFASHMLESSGDLRAVQEMLGHANLSTTQVYTHLDFKR----LASVYDS 290 Query: 317 THPSITQK 324 HP +K Sbjct: 291 AHPRARKK 298 >gi|205373757|ref|ZP_03226559.1| site-specific tyrosine recombinase XerD [Bacillus coahuilensis m4-4] Length = 297 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 101/303 (33%), Positives = 158/303 (52%), Gaps = 15/303 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L L+IERGLS TL SYE D + + L TE+ I+ + + I F++ Sbjct: 6 KDFLHFLQIERGLSSNTLVSYERDLKSYCNHLK-NTEQ---IEDLNHVVRGNIIEFLAFL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + Q +++ R ++ I+SF ++L + KIT +++ K SLP+ L+ + TL+ Sbjct: 62 KDQGKSSKTIARHIASIRSFHQFLLREKITDHDPTVHIDTPKAERSLPKVLSLDEVETLL 121 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D+ L K R+ A+L +LY G+R+SE + L +++ +R GKG+K R Sbjct: 122 DSPNLQ-----KPSGIRDKAMLEILYATGIRVSELIELNLEDVHLTMGFVRCIGKGNKER 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 I+PL + EY + L + LF G L F + ++ L + Sbjct: 177 IIPLGNHAITILKEYLEKARPKLRSSKYRTDALFLNHHGNRLTRQGFWKILKGLATKANI 236 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V + E+Y + Sbjct: 237 QKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTR----LKEVYSK 292 Query: 317 THP 319 HP Sbjct: 293 FHP 295 >gi|107024018|ref|YP_622345.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia AU 1054] gi|116691105|ref|YP_836728.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia HI2424] gi|105894207|gb|ABF77372.1| Tyrosine recombinase XerC [Burkholderia cenocepacia AU 1054] gi|116649194|gb|ABK09835.1| tyrosine recombinase XerC [Burkholderia cenocepacia HI2424] Length = 306 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 90/316 (28%), Positives = 160/316 (50%), Gaps = 29/316 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L NL+ R LS+ TL++Y + + A E +T ++R + + Sbjct: 9 YLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLEALTA--------ADMRGAVVRGHA 60 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS+ LS ++F ++ +R + + +R K+ SLP+AL+ A+ L+D Sbjct: 61 AGLSARSISHRLSAWRAFYRWFAQRVEMPANPVAGVRAPKREKSLPKALSVDDAVALMDA 120 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-----------QSTLR 189 L T+ R+ AIL L Y GLR++E + L + D ++ + Sbjct: 121 PLAGTTESI-----RDHAILELFYSSGLRLAELVGLDVRYTQADGYRSAGWLDLAEAEVT 175 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 ++GKG+K R VP+ A+ + + + + PLF +RG ++PGV + +++ Sbjct: 176 VRGKGNKERKVPVGSKAIDALNAWLAVRDEFVKHDPH-PLFVSVRGNRMSPGVVRERVKR 234 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 G+P + H LRHSFATH+L + GDLR++Q +LGH ++ TQIYT+++ ++ Sbjct: 235 AALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQH---- 290 Query: 310 MMEIYDQTHPSITQKD 325 + +IYD HP ++D Sbjct: 291 LAKIYDSAHPRAKKRD 306 >gi|289177291|gb|ADC84537.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium animalis subsp. lactis BB-12] Length = 309 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 88/304 (28%), Positives = 151/304 (49%), Gaps = 16/304 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L ++++ERGLS T+Q+YE D Q++ +L + I ++ ++ F++ + Sbjct: 14 FLAHIDVERGLSAATVQAYENDIDQYVRWLG-----EQGIAKAASITSNDVEDFVAAQSK 68 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 SL R L+ I F ++++ ++ + ++R K + +LP L + L+D Sbjct: 69 SGTSAVSLARRLASIHMFHRFMQSERVVADDVSQSVRPPKSAETLPEVLTVDEVQRLLDA 128 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + E + R+SA+L L+Y G R+SEA+ L ++ D +R+ GKG K R+V Sbjct: 129 ARHDDASEA--VSMRDSALLELMYATGCRVSEAVGLDFTDVDMDAQVVRLTGKGAKQRLV 186 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQ-----LPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 P A+ Y + +L + +F RGK L I+ Sbjct: 187 PFGTYAANALRAYVEHARPELENKAKGERERSAIFLNKRGKRLTRQSVWEIIKHAGALAH 246 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + HTLRHSFATH+L G D+R++Q +LGH + TTQ+YT+V+ D ++E Y Sbjct: 247 VSKPLHPHTLRHSFATHMLQGGADVRTVQELLGHASVKTTQMYTHVSQ----DTLIETYI 302 Query: 316 QTHP 319 +HP Sbjct: 303 TSHP 306 >gi|229019302|ref|ZP_04176128.1| Tyrosine recombinase xerD [Bacillus cereus AH1273] gi|229025548|ref|ZP_04181956.1| Tyrosine recombinase xerD [Bacillus cereus AH1272] gi|228735730|gb|EEL86317.1| Tyrosine recombinase xerD [Bacillus cereus AH1272] gi|228741987|gb|EEL92161.1| Tyrosine recombinase xerD [Bacillus cereus AH1273] Length = 296 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 93/304 (30%), Positives = 160/304 (52%), Gaps = 18/304 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++++ + +E+GL+K T+ SYE D + ++ +L + K T +++ I F+ Sbjct: 6 KDFIHYMIVEKGLAKNTVVSYERDLKSYVKYLQNVEQTK----TFHEVTRIHIVNFLQYL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + ++L R ++ I+SF ++L + + +++ + LP+ L+ + Sbjct: 62 KENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLS-------I 114 Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 D V LL T R+ A+L LLY GLR+SE ++L +++ +R GKG+K Sbjct: 115 DEVEALLQTPKAVSAFGIRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNK 174 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RI+PL +AI +Y + +L + LF G L+ F + +++L + Sbjct: 175 ERIIPLGSLATEAIQKYIEKGRRELMGKKAVDALFLNHHGNRLSRQGFWKILKRLAKEAN 234 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V+ + ++Y Sbjct: 235 IEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKAR----LKDVYK 290 Query: 316 QTHP 319 Q HP Sbjct: 291 QFHP 294 >gi|328955348|ref|YP_004372681.1| integrase family protein [Coriobacterium glomerans PW2] gi|328455672|gb|AEB06866.1| integrase family protein [Coriobacterium glomerans PW2] Length = 314 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 92/312 (29%), Positives = 155/312 (49%), Gaps = 20/312 (6%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 ++ + ++L L +ERGLS+ T+ Y R ++AF +E I + + ++ Sbjct: 14 QIARAADSYLSYLSVERGLSENTIAGYR---RDLSSYIAFLLDEGI--DRLDGIDRADVE 68 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 AF+ +R S++R+LS +K F ++ + +T ++R ++ + LP ++ + Sbjct: 69 AFVCAKRDGGYSSASIERALSAVKGFHRFAIREGLTETHPTASLRLPRREDRLPAVISIE 128 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 QA L+D T+ AR+ A L +LYGCGLR+SE + L +++ D+ L G Sbjct: 129 QARALLDQPFAPTA-----AGARDRATLEVLYGCGLRVSELIGLDVRDLHLDEEFLHALG 183 Query: 193 KGDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 KG K R+VP+ + A+ Y +L + + G L+ Sbjct: 184 KGSKERLVPITGTAAAAMEAYMSGPRSELAAHARRASPSPAVLLNKNGGRLSRQAVHACC 243 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 + R G+ HTLRHSFATH+L+ G DLR +Q ILGH ++TTQ+YT+++ Sbjct: 244 ERWGRIAGID-GLHPHTLRHSFATHMLAGGADLRVLQEILGHASITTTQLYTHLDRAQ-- 300 Query: 308 DWMMEIYDQTHP 319 + EIY HP Sbjct: 301 --ITEIYLGAHP 310 >gi|315268949|gb|ADT95802.1| tyrosine recombinase XerD [Shewanella baltica OS678] Length = 300 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 102/300 (34%), Positives = 158/300 (52%), Gaps = 16/300 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +L +GLS TL +Y D R F + A ++ +T+ ++ Q ++RA+++ R Sbjct: 14 FLDDLWSNKGLSDNTLSAYRTDLRHFDRYQA---QQGVTLLSVSQ---ADVRAYLAFRVE 67 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q S R LS ++ F YL + K + + + + K + LP +L+E Q VD Sbjct: 68 QDFARTSSARLLSSLRRFYTYLVQTKQISADPMALVESPKLTRHLPDSLSESQ----VDR 123 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 +L + E ++ R+ A+L LLY GLR+SE + LT + + Q +RI GKG K R+V Sbjct: 124 LLSEPNVEDA-VECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLV 182 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 PL + Y +L N Q + F RG+ + F I+ G+ + Sbjct: 183 PLGELAITEVESYMKFARQELLGNKQSDVVFPSKRGQMMTRQTFWHRIKLYALRAGIETA 242 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + E++ Q HP Sbjct: 243 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARAR----LQELHQQHHP 298 >gi|153002033|ref|YP_001367714.1| tyrosine recombinase XerD [Shewanella baltica OS185] gi|151366651|gb|ABS09651.1| tyrosine recombinase XerD [Shewanella baltica OS185] Length = 309 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 102/300 (34%), Positives = 157/300 (52%), Gaps = 16/300 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +L +GLS TL +Y D R F + A ++ +T+ + Q ++RA+++ R Sbjct: 23 FLDDLWSNKGLSDNTLSAYRTDLRHFDRYQA---QQGVTLLAVSQ---ADVRAYLAFRVE 76 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q S R LS ++ F YL + K + + + + K + LP +L+E Q VD Sbjct: 77 QDFARTSSARLLSSLRRFYTYLVQTKQISADPMALVESPKLTRHLPDSLSESQ----VDR 132 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 +L + E ++ R+ A+L LLY GLR+SE + LT + + Q +RI GKG K R+V Sbjct: 133 LLSEPNVEDA-VECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLV 191 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 PL + Y +L N Q + F RG+ + F I+ G+ + Sbjct: 192 PLGELAITEVESYMKFARQELLGNKQSDVVFPSKRGQMMTRQTFWHRIKLYALRAGIETA 251 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + E++ Q HP Sbjct: 252 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARAR----LQELHQQHHP 307 >gi|297570024|ref|YP_003691368.1| tyrosine recombinase XerD [Desulfurivibrio alkaliphilus AHT2] gi|296925939|gb|ADH86749.1| tyrosine recombinase XerD [Desulfurivibrio alkaliphilus AHT2] Length = 356 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 99/323 (30%), Positives = 157/323 (48%), Gaps = 33/323 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT--------------------- 59 +LQ L ER L+ TL +Y+ D F FLA T Sbjct: 41 FLQYLAAERRLATNTLAAYQSDLLSFFAFLARATAPVAATVDAGATGTAGKDRGAGLASA 100 Query: 60 --IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117 I I Q+ +RA+++ R +K RS R +S +++F ++L+ ++ + Sbjct: 101 RPITEINQIGPEHLRAYLAACRQEKAAPRSTSRRISALRAFFRFLQGEQLLGHDPAALLD 160 Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 K +LP+ L+ + V+ +L + + RN A+L+LLY G+R+SE + L Sbjct: 161 LPKIGRALPKVLSSAE----VEQLLAPPAPPASILALRNHAMLHLLYATGMRVSELVKL- 215 Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGK 236 P ++ LRI GKG K R+VP + R+A+ Y P L LF RG Sbjct: 216 PVAAVNQAGHLRILGKGSKERLVPFGEAARQAMAVYITQARPRLLKKRRSDFLFVTGRGT 275 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + F + +R+ R G+ + H LRHSFATHLL +G DLR++Q +LGH ++TTQ Sbjct: 276 AMTRLRFWQIVRKSARERGIAREISPHVLRHSFATHLLEHGADLRAVQVMLGHADIATTQ 335 Query: 297 IYTNVNSKNGGDWMMEIYDQTHP 319 IYT+V++ + + I+ + HP Sbjct: 336 IYTHVDT----NRLKAIHRKFHP 354 >gi|304410563|ref|ZP_07392181.1| tyrosine recombinase XerD [Shewanella baltica OS183] gi|307304656|ref|ZP_07584406.1| tyrosine recombinase XerD [Shewanella baltica BA175] gi|304351047|gb|EFM15447.1| tyrosine recombinase XerD [Shewanella baltica OS183] gi|306912058|gb|EFN42482.1| tyrosine recombinase XerD [Shewanella baltica BA175] Length = 300 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 102/300 (34%), Positives = 157/300 (52%), Gaps = 16/300 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +L +GLS TL +Y D R F + A ++ +T+ + Q ++RA+++ R Sbjct: 14 FLDDLWSSKGLSDNTLSAYRTDLRHFDRYQA---QQGVTLLAVSQ---ADVRAYLAFRVE 67 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q S R LS ++ F YL + K + + + + K + LP +L+E Q VD Sbjct: 68 QDFARTSSARLLSSLRRFYTYLVQTKQISADPMALVESPKLTRHLPDSLSESQ----VDR 123 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 +L + E ++ R+ A+L LLY GLR+SE + LT + + Q +RI GKG K R+V Sbjct: 124 LLSEPNVEDA-VECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLV 182 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 PL + Y +L N Q + F RG+ + F I+ G+ + Sbjct: 183 PLGELAITEVESYMKFARQELLGNKQSDVVFPSKRGQMMTRQTFWHRIKLYALRAGIETA 242 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + E++ Q HP Sbjct: 243 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARAR----LQELHQQHHP 298 >gi|264680261|ref|YP_003280171.1| phage integrase [Comamonas testosteroni CNB-2] gi|262210777|gb|ACY34875.1| phage integrase [Comamonas testosteroni CNB-2] Length = 348 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 97/332 (29%), Positives = 161/332 (48%), Gaps = 38/332 (11%) Query: 5 NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64 LPE+V ++L+++ +++ L++ T Y D + F +E +T+Q Sbjct: 15 QLPEVV--------HSYLEHVRVQKRLAERTHTLYALDLIKLQSFAQAAAQELLTLQP-- 64 Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 + IR F ++ R + LSG +SF ++ +R++ + + +R K + Sbjct: 65 ----SHIRRFAAQMHGAGRSARGIALILSGWRSFFRWAAQRELVPFNPVEGVRGPKAAKP 120 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQN-- 180 LP+AL A+ L H W++AR+ A+ LLY CGLR++E L L P Sbjct: 121 LPKALAVDDAVQLAS---FHNPEADPWMEARDVAMTELLYSCGLRVAELVGLDLRPDQQS 177 Query: 181 -------IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL------ 227 I + +QGKG K RIVP+ +A+ + L L QL Sbjct: 178 RHEGRGWIDLEAGDAHVQGKGSKRRIVPVGRMAIEALQRWLALRSSALVGTAQLKAQDEA 237 Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 LF G RG+ L+ ++Q + GL H LRHSFA+H+L + GDLR++Q +L Sbjct: 238 ALFVGRRGERLSAQSVWSRLKQRGQQAGLATGVHPHVLRHSFASHMLQSSGDLRAVQELL 297 Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 GH ++TTQIYT ++ ++ + + Y++ HP Sbjct: 298 GHSSIATTQIYTRLDFQH----LAQAYEKAHP 325 >gi|229592394|ref|YP_002874513.1| site-specific tyrosine recombinase XerD [Pseudomonas fluorescens SBW25] gi|229364260|emb|CAY51975.1| integrase/recombinase [Pseudomonas fluorescens SBW25] Length = 298 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 101/308 (32%), Positives = 157/308 (50%), Gaps = 32/308 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISKRR 79 +L L +E+GLS T Q+Y D +F + E+ + I R+L I ++ R Sbjct: 12 FLDALWLEKGLSDNTRQAYRSD---LALFNGWLQEKNLELINAGREL----ILDHLAWRL 64 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q RS R LSG++ F +YL + K+ L + + LP++L+E Sbjct: 65 EQNYKPRSTARFLSGVRGFYRYLLREKLIALDPTLQVEMPQLGRPLPKSLSEADV----- 119 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + LL ++ I R+ A+L +LY CGLR++E +SLT + + Q LR+ GKG K R+ Sbjct: 120 DALLAAPDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERL 179 Query: 200 VPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 VP+ +R A E P D+ LF +RG+ + F I+ Sbjct: 180 VPMGEEAIVWVERYMRDARGELLGGRPSDV-------LFPSLRGEQMTRQTFWHRIKHQA 232 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 + G+ + + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + Sbjct: 233 KVAGIGKALSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----LQ 288 Query: 312 EIYDQTHP 319 +++ + HP Sbjct: 289 DMHAKHHP 296 >gi|229168834|ref|ZP_04296553.1| Tyrosine recombinase xerD [Bacillus cereus AH621] gi|228614682|gb|EEK71788.1| Tyrosine recombinase xerD [Bacillus cereus AH621] Length = 296 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 93/304 (30%), Positives = 160/304 (52%), Gaps = 18/304 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++++ + +E+GL+K T+ SYE D + ++ +L + K T +++ I F+ Sbjct: 6 KDFIHYMIVEKGLAKNTVVSYERDLKSYVKYLQNVEQTK----TFHEVTRLHIVNFLQHL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + ++L R ++ I+SF ++L + + +++ + LP+ L+ + Sbjct: 62 KENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLS-------I 114 Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 D V LL T R+ A+L LLY GLR+SE ++L +++ +R GKG+K Sbjct: 115 DEVEALLQTPKTASAFGIRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNK 174 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RI+PL +AI +Y + +L + LF G L+ F + +++L + Sbjct: 175 ERIIPLGSLATEAIQKYIEKGRRELMGKKAVDALFLNHHGNRLSRQGFWKILKRLAKEAN 234 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V+ + ++Y Sbjct: 235 IAKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKAR----LKDVYK 290 Query: 316 QTHP 319 Q HP Sbjct: 291 QFHP 294 >gi|53802409|ref|YP_112927.1| tyrosine recombinase XerD [Methylococcus capsulatus str. Bath] gi|53756170|gb|AAU90461.1| tyrosine recombinase XerD [Methylococcus capsulatus str. Bath] Length = 309 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 104/303 (34%), Positives = 159/303 (52%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q ++++L +E GLS TL++Y D R F +LA ++T L+ +I A++ R Sbjct: 20 QRFVESLWVEEGLSPHTLKAYGSDLRLFAAWLATNRCAELT-----ALTGEDIEAYLGWR 74 Query: 79 RTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 ++K R+ R LS I+ F Y L++ +IT + L + K LP L E + Sbjct: 75 HSRKSKSRTSARVLSSIRHFCAYRLRRGEITGDPCAL-IAPPKLGRFLPDTLTESE---- 129 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 V+ +L +T + R+ A+L +LY GLR+SE + L+ I Q +RI GKGDK Sbjct: 130 VEALLAAPDVDTP-LGFRDRAMLEMLYATGLRVSELVGLSFGQISLRQGVVRISGKGDKD 188 Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 R+VP+ + Y D + P L LF RG + F I++ G+ Sbjct: 189 RLVPVGEEALDWLERYLDKVRPVTLKGRQSDFLFVTDRGGAMTRQAFWHLIKRYAGQAGI 248 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + + E++ + Sbjct: 249 SKPLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQER----LKELHTR 304 Query: 317 THP 319 HP Sbjct: 305 FHP 307 >gi|82751090|ref|YP_416831.1| site-specific recombinase [Staphylococcus aureus RF122] gi|82656621|emb|CAI81047.1| site-specific recombinase [Staphylococcus aureus RF122] Length = 295 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 102/304 (33%), Positives = 167/304 (54%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTI-RQLSYTEIRAFIS 76 + +L+ ++IE+GLS T+ +Y D +++ ++ TE I+ I I RQL + I Sbjct: 6 EEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYM---TEHHISHIDFIDRQLIQECLGHLID 62 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + ++ K S+ R +S I+SF ++ + K + + + + K LP LN + L Sbjct: 63 QGQSAK----SIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLA 118 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L++ + L+ K R+ +L LLY G+R+SE + L +N+ +R+ GKGDK Sbjct: 119 LLETLDLN-----KINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDK 173 Query: 197 IRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RIVPL +V + + Y + + P L + LF + GKPL+ + I+Q Sbjct: 174 ERIVPLGDAVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKAN 233 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + T HTLRHSFATHLL NG DLR++Q +LGH +STTQ+YT+V+ + ++Y+ Sbjct: 234 IKKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYN 289 Query: 316 QTHP 319 Q HP Sbjct: 290 QFHP 293 >gi|183602465|ref|ZP_02963831.1| probable integrase/recombinase [Bifidobacterium animalis subsp. lactis HN019] gi|219683221|ref|YP_002469604.1| tyrosine recombinase XerD [Bifidobacterium animalis subsp. lactis AD011] gi|241191181|ref|YP_002968575.1| Integrase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196587|ref|YP_002970142.1| Integrase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218384|gb|EDT89029.1| probable integrase/recombinase [Bifidobacterium animalis subsp. lactis HN019] gi|219620871|gb|ACL29028.1| tyrosine recombinase XerD [Bifidobacterium animalis subsp. lactis AD011] gi|240249573|gb|ACS46513.1| Integrase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251141|gb|ACS48080.1| Integrase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295794174|gb|ADG33709.1| Integrase [Bifidobacterium animalis subsp. lactis V9] Length = 307 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 88/304 (28%), Positives = 151/304 (49%), Gaps = 16/304 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L ++++ERGLS T+Q+YE D Q++ +L + I ++ ++ F++ + Sbjct: 12 FLAHIDVERGLSAATVQAYENDIDQYVRWLG-----EQGIAKAASITSNDVEDFVAAQSK 66 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 SL R L+ I F ++++ ++ + ++R K + +LP L + L+D Sbjct: 67 SGTSAVSLARRLASIHMFHRFMQSERVVADDVSQSVRPPKSAETLPEVLTVDEVQRLLDA 126 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + E + R+SA+L L+Y G R+SEA+ L ++ D +R+ GKG K R+V Sbjct: 127 ARHDDASEA--VSMRDSALLELMYATGCRVSEAVGLDFTDVDMDAQVVRLTGKGAKQRLV 184 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQ-----LPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 P A+ Y + +L + +F RGK L I+ Sbjct: 185 PFGTYAANALRAYVEHARPELENKAKGERERSAIFLNKRGKRLTRQSVWEIIKHAGALAH 244 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + HTLRHSFATH+L G D+R++Q +LGH + TTQ+YT+V+ D ++E Y Sbjct: 245 VSKPLHPHTLRHSFATHMLQGGADVRTVQELLGHASVKTTQMYTHVSQ----DTLIETYI 300 Query: 316 QTHP 319 +HP Sbjct: 301 TSHP 304 >gi|134297261|ref|YP_001120996.1| site-specific tyrosine recombinase XerC [Burkholderia vietnamiensis G4] gi|134140418|gb|ABO56161.1| tyrosine recombinase XerC [Burkholderia vietnamiensis G4] Length = 306 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 94/318 (29%), Positives = 161/318 (50%), Gaps = 33/318 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L NL+ R LS+ TL+ Y + + A + + L+ T++R +++ Sbjct: 9 YLSNLKHVRQLSEHTLRGYTHELDELKKLAAG--------RPLETLTATDVRGAVARAHA 60 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS+ LS ++F ++L R + + +R K+ +LP+AL+ A L+D Sbjct: 61 GGLSARSISHRLSAWRAFYRWLALRIEMPANPVAAVRAPKRPKTLPKALSVDDASALMDA 120 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-----------QSTLR 189 L T+ R+ AIL L Y GLR++E + L D ++ + Sbjct: 121 PLPDTTEGI-----RDHAILELFYSSGLRLAELVGLDAMYTQADGYRSAGWLDLAEAEVT 175 Query: 190 IQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 ++GKG+K R VP+ RKAI L + + + PLF +RG + PGV + + Sbjct: 176 VRGKGNKERKVPV---GRKAIAALNAWLAVRGEFVKHDPHPLFLSVRGNRMAPGVVRERV 232 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 ++ G+P + H LRHSFATH+L + GDLR++Q +LGH ++ TQIYT+++ ++ Sbjct: 233 KRAALSAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQH-- 290 Query: 308 DWMMEIYDQTHPSITQKD 325 + +IYD HP ++D Sbjct: 291 --LAKIYDSAHPRAKKRD 306 >gi|253732140|ref|ZP_04866305.1| site-specific recombinase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724095|gb|EES92824.1| site-specific recombinase [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 295 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 103/304 (33%), Positives = 164/304 (53%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTI-RQLSYTEIRAFIS 76 + +L+ ++IE+GLS T+ +Y D +++ ++ TE I+ I I RQL + I Sbjct: 6 EEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYM---TEHHISHIDFIDRQLIQECLGHLID 62 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + ++ K S+ R +S I+SF ++ + K + + + + K LP LN + L Sbjct: 63 QGQSAK----SIARFISTIRSFHQFAIREKYAVKDPTVLLDSPKYDKKLPDVLNVDEVLA 118 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L L T K R+ +L LLY G+R+SE + L +N+ +R+ GKGDK Sbjct: 119 L-----LETPDLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDK 173 Query: 197 IRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RIVPL +V + + Y + + P L + LF + GKPL+ + I+Q Sbjct: 174 ERIVPLGDAVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKAN 233 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + T HTLRHSFATHLL NG DLR++Q +LGH +STTQ+YT+V+ + ++Y+ Sbjct: 234 IKKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYN 289 Query: 316 QTHP 319 Q HP Sbjct: 290 QFHP 293 >gi|295428073|ref|ZP_06820705.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus EMRSA16] gi|295128431|gb|EFG58065.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus EMRSA16] Length = 297 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 103/304 (33%), Positives = 164/304 (53%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTI-RQLSYTEIRAFIS 76 + +L+ ++IE+GLS T+ +Y D +++ ++ TE I+ I I RQL + I Sbjct: 8 EEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYM---TEHHISHIDFIDRQLIQECLGHLID 64 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + ++ K S+ R +S I+SF ++ + K + + + + K LP LN + L Sbjct: 65 QGQSAK----SIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLA 120 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L L T K R+ +L LLY G+R+SE + L +N+ +R+ GKGDK Sbjct: 121 L-----LETPDLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDK 175 Query: 197 IRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RIVPL +V + + Y + + P L + LF + GKPL+ + I+Q Sbjct: 176 ERIVPLGDAVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKAN 235 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + T HTLRHSFATHLL NG DLR++Q +LGH +STTQ+YT+V+ + ++Y+ Sbjct: 236 IKKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYN 291 Query: 316 QTHP 319 Q HP Sbjct: 292 QFHP 295 >gi|194367246|ref|YP_002029856.1| site-specific tyrosine recombinase XerC [Stenotrophomonas maltophilia R551-3] gi|194350050|gb|ACF53173.1| tyrosine recombinase XerC [Stenotrophomonas maltophilia R551-3] Length = 296 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 94/310 (30%), Positives = 161/310 (51%), Gaps = 21/310 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +LQ+L++ER +S TL +Y D L L+ + E + + L +R F++ Sbjct: 5 QAFLQHLQVERRMSAHTLDAYRRD----LDALSVWAEPRGM--AVEALDAETLRQFVADE 58 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + +SL+R LS +SF +L K + ++ + LP+ L+ +A+ LV Sbjct: 59 HRRGLSAKSLQRRLSACRSFYAWLLKHGRIEVNPAATLKAPRAPRRLPQVLDADEAVQLV 118 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + L E + R+ A+L L Y GLR+SE +LT +++ + + GKG++ R Sbjct: 119 E---LEPEGE---LGRRDRALLELFYSSGLRLSEVCALTWRDLDFASGLVNVMGKGNRQR 172 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VP R+A+ + + +P+F G R P++ Q IRQL + GL Sbjct: 173 RVPFGRPAREALQAWR----AESGGGPAMPVFPG-RNGPISQRAVQIRIRQLAQRQGLFK 227 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 H LRHSFA+H+L + GDLR +Q +LGH ++TTQIYT+++ ++ + ++YD H Sbjct: 228 HVHPHMLRHSFASHILESSGDLRGVQELLGHADIATTQIYTHLDFQH----LAKVYDAAH 283 Query: 319 PSITQKDKKN 328 P ++ K + Sbjct: 284 PRAKRRSKDD 293 >gi|206558906|ref|YP_002229666.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia J2315] gi|198034943|emb|CAR50815.1| tyrosine recombinase XerC [Burkholderia cenocepacia J2315] Length = 306 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 92/318 (28%), Positives = 163/318 (51%), Gaps = 33/318 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L NL+ R LS+ TL++Y + + A + + L+ ++R +++ Sbjct: 9 YLSNLKHVRQLSEHTLRAYTHELDELKKLAAG--------RPLDALTAADMRGAVARAHA 60 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS+ LS ++F ++L +R + + +R K+ +LP+AL+ A L+D Sbjct: 61 GGLSARSISHRLSAWRAFYRWLAQRIEMPANPVAAVRAPKRPKTLPKALSVDDASALMDA 120 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-----------QSTLR 189 L T+ R+ AIL L Y GLR++E + L D ++ + Sbjct: 121 PLAGTTEGI-----RDHAILELFYSSGLRLAELIGLDVTYTQADGYRSAGWLDLAEAEVT 175 Query: 190 IQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 ++GKG+K R VP+ RKAI L + + + PLF +RG ++PGV + + Sbjct: 176 VRGKGNKERKVPV---GRKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMSPGVVRERV 232 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 ++ G+P + H LRHSFATH+L + GDLR++Q +LGH ++ TQ+YT+++ ++ Sbjct: 233 KRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQVYTSLDFQH-- 290 Query: 308 DWMMEIYDQTHPSITQKD 325 + +IYD HP ++D Sbjct: 291 --LAKIYDSAHPRAKKRD 306 >gi|170734437|ref|YP_001766384.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia MC0-3] gi|169817679|gb|ACA92262.1| tyrosine recombinase XerC [Burkholderia cenocepacia MC0-3] Length = 306 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 93/318 (29%), Positives = 161/318 (50%), Gaps = 33/318 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L NL+ R LS+ TL++Y + + A E +T ++R + + Sbjct: 9 YLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLEALTA--------ADMRGAVVRGHA 60 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS+ LS ++F ++ +R + + +R K+ SLP+AL+ A+ L+D Sbjct: 61 AGLSARSISHRLSAWRAFYRWFAQRVEMPANPVAGVRAPKREKSLPKALSVDDAVALMDA 120 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-----------QSTLR 189 L T+ R+ AIL L Y GLR++E + L + D ++ + Sbjct: 121 PLAGTTEGI-----RDHAILELFYSSGLRLAELVGLDVRYTQADGYRSAGWLDLAEAEVT 175 Query: 190 IQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 ++GKG+K R VP+ KAI L + + + PLF +RG ++PGV + + Sbjct: 176 VRGKGNKERKVPV---GSKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMSPGVVRERV 232 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 ++ G+P + H LRHSFATH+L + GDLR++Q +LGH ++ TQIYT+++ ++ Sbjct: 233 KRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQH-- 290 Query: 308 DWMMEIYDQTHPSITQKD 325 + +IYD HP ++D Sbjct: 291 --LAKIYDSAHPRAKKRD 306 >gi|15924487|ref|NP_372021.1| site-specific recombinase [Staphylococcus aureus subsp. aureus Mu50] gi|15927078|ref|NP_374611.1| site-specific recombinase [Staphylococcus aureus subsp. aureus N315] gi|21283180|ref|NP_646268.1| site-specific recombinase [Staphylococcus aureus subsp. aureus MW2] gi|49483747|ref|YP_040971.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MRSA252] gi|49486335|ref|YP_043556.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MSSA476] gi|57650453|ref|YP_186382.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus COL] gi|87160007|ref|YP_494143.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195302|ref|YP_500106.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267981|ref|YP_001246924.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus JH9] gi|150394046|ref|YP_001316721.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus JH1] gi|151221617|ref|YP_001332439.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus str. Newman] gi|156979816|ref|YP_001442075.1| site-specific recombinase [Staphylococcus aureus subsp. aureus Mu3] gi|161509725|ref|YP_001575384.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140082|ref|ZP_03564575.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253314865|ref|ZP_04838078.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253733255|ref|ZP_04867420.1| site-specific recombinase [Staphylococcus aureus subsp. aureus TCH130] gi|255006283|ref|ZP_05144884.2| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257425620|ref|ZP_05602044.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus 55/2053] gi|257428281|ref|ZP_05604679.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus 65-1322] gi|257430918|ref|ZP_05607298.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 68-397] gi|257433607|ref|ZP_05609965.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus E1410] gi|257436520|ref|ZP_05612564.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus M876] gi|257793574|ref|ZP_05642553.1| tyrosine recombinase XerD [Staphylococcus aureus A9781] gi|258411126|ref|ZP_05681406.1| tyrosine recombinase xerD [Staphylococcus aureus A9763] gi|258419910|ref|ZP_05682871.1| tyrosine recombinase XerD [Staphylococcus aureus A9719] gi|258423151|ref|ZP_05686044.1| tyrosine recombinase XerD [Staphylococcus aureus A9635] gi|258437328|ref|ZP_05689312.1| tyrosine recombinase xerD [Staphylococcus aureus A9299] gi|258443533|ref|ZP_05691872.1| tyrosine recombinase xerD [Staphylococcus aureus A8115] gi|258446740|ref|ZP_05694894.1| tyrosine recombinase xerD [Staphylococcus aureus A6300] gi|258448655|ref|ZP_05696767.1| tyrosine recombinase xerD [Staphylococcus aureus A6224] gi|258451155|ref|ZP_05699190.1| tyrosine recombinase xerD [Staphylococcus aureus A5948] gi|258454271|ref|ZP_05702241.1| tyrosine recombinase xerD [Staphylococcus aureus A5937] gi|262049084|ref|ZP_06021961.1| site-specific recombinase [Staphylococcus aureus D30] gi|262051169|ref|ZP_06023393.1| site-specific recombinase [Staphylococcus aureus 930918-3] gi|269203124|ref|YP_003282393.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ED98] gi|282892996|ref|ZP_06301230.1| tyrosine recombinase XerD [Staphylococcus aureus A8117] gi|282904077|ref|ZP_06311965.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus C160] gi|282905904|ref|ZP_06313759.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus Btn1260] gi|282908814|ref|ZP_06316632.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911133|ref|ZP_06318935.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus WBG10049] gi|282914302|ref|ZP_06322088.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus M899] gi|282919271|ref|ZP_06327006.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus C427] gi|282924596|ref|ZP_06332264.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus C101] gi|282924746|ref|ZP_06332413.1| tyrosine recombinase XerD [Staphylococcus aureus A9765] gi|282928967|ref|ZP_06336554.1| tyrosine recombinase XerD [Staphylococcus aureus A10102] gi|283958259|ref|ZP_06375710.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus A017934/97] gi|284024557|ref|ZP_06378955.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 132] gi|293503379|ref|ZP_06667226.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 58-424] gi|293510394|ref|ZP_06669100.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus M809] gi|293530933|ref|ZP_06671615.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus M1015] gi|294848527|ref|ZP_06789273.1| tyrosine recombinase XerD [Staphylococcus aureus A9754] gi|295406617|ref|ZP_06816422.1| tyrosine recombinase XerD [Staphylococcus aureus A8819] gi|296276353|ref|ZP_06858860.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus MR1] gi|297207783|ref|ZP_06924218.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245799|ref|ZP_06929664.1| tyrosine recombinase XerD [Staphylococcus aureus A8796] gi|297590959|ref|ZP_06949597.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus MN8] gi|300911864|ref|ZP_07129307.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus TCH70] gi|304380916|ref|ZP_07363576.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|60416269|sp|P0A0N9|XERD_STAAM RecName: Full=Tyrosine recombinase xerD gi|60416270|sp|P0A0P0|XERD_STAAN RecName: Full=Tyrosine recombinase xerD gi|60416271|sp|P0A0P1|XERD_STAAW RecName: Full=Tyrosine recombinase xerD gi|60416272|sp|P0A0P2|XERD_STAAU RecName: Full=Tyrosine recombinase xerD gi|81649271|sp|Q6G967|XERD_STAAS RecName: Full=Tyrosine recombinase xerD gi|81651036|sp|Q6GGK1|XERD_STAAR RecName: Full=Tyrosine recombinase xerD gi|81694449|sp|Q5HFS5|XERD_STAAC RecName: Full=Tyrosine recombinase xerD gi|3747042|gb|AAC64162.1| tyrosine recombinase XerD [Staphylococcus aureus] gi|13701296|dbj|BAB42590.1| site-specific recombinase [Staphylococcus aureus subsp. aureus N315] gi|14247268|dbj|BAB57659.1| site-specific recombinase [Staphylococcus aureus subsp. aureus Mu50] gi|21204620|dbj|BAB95316.1| site-specific recombinase [Staphylococcus aureus subsp. aureus MW2] gi|49241876|emb|CAG40569.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MRSA252] gi|49244778|emb|CAG43214.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MSSA476] gi|57284639|gb|AAW36733.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus COL] gi|87125981|gb|ABD20495.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202860|gb|ABD30670.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741050|gb|ABQ49348.1| tyrosine recombinase XerD subunit [Staphylococcus aureus subsp. aureus JH9] gi|149946498|gb|ABR52434.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus JH1] gi|150374417|dbj|BAF67677.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus str. Newman] gi|156721951|dbj|BAF78368.1| site-specific recombinase [Staphylococcus aureus subsp. aureus Mu3] gi|160368534|gb|ABX29505.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253728795|gb|EES97524.1| site-specific recombinase [Staphylococcus aureus subsp. aureus TCH130] gi|257271314|gb|EEV03460.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus 55/2053] gi|257275122|gb|EEV06609.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus 65-1322] gi|257278348|gb|EEV08984.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 68-397] gi|257281700|gb|EEV11837.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus E1410] gi|257283871|gb|EEV13994.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus M876] gi|257787546|gb|EEV25886.1| tyrosine recombinase XerD [Staphylococcus aureus A9781] gi|257840276|gb|EEV64740.1| tyrosine recombinase xerD [Staphylococcus aureus A9763] gi|257844095|gb|EEV68483.1| tyrosine recombinase XerD [Staphylococcus aureus A9719] gi|257846601|gb|EEV70622.1| tyrosine recombinase XerD [Staphylococcus aureus A9635] gi|257848533|gb|EEV72521.1| tyrosine recombinase xerD [Staphylococcus aureus A9299] gi|257850939|gb|EEV74882.1| tyrosine recombinase xerD [Staphylococcus aureus A8115] gi|257854315|gb|EEV77264.1| tyrosine recombinase xerD [Staphylococcus aureus A6300] gi|257857933|gb|EEV80822.1| tyrosine recombinase xerD [Staphylococcus aureus A6224] gi|257861210|gb|EEV84023.1| tyrosine recombinase xerD [Staphylococcus aureus A5948] gi|257863550|gb|EEV86308.1| tyrosine recombinase xerD [Staphylococcus aureus A5937] gi|259160806|gb|EEW45826.1| site-specific recombinase [Staphylococcus aureus 930918-3] gi|259162753|gb|EEW47318.1| site-specific recombinase [Staphylococcus aureus D30] gi|262075414|gb|ACY11387.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ED98] gi|269940989|emb|CBI49373.1| integrase/recombinase [Staphylococcus aureus subsp. aureus TW20] gi|282313431|gb|EFB43826.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus C101] gi|282317081|gb|EFB47455.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus C427] gi|282321483|gb|EFB51808.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus M899] gi|282324828|gb|EFB55138.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus WBG10049] gi|282327078|gb|EFB57373.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331196|gb|EFB60710.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus Btn1260] gi|282589374|gb|EFB94465.1| tyrosine recombinase XerD [Staphylococcus aureus A10102] gi|282592753|gb|EFB97759.1| tyrosine recombinase XerD [Staphylococcus aureus A9765] gi|282595695|gb|EFC00659.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus C160] gi|282764314|gb|EFC04440.1| tyrosine recombinase XerD [Staphylococcus aureus A8117] gi|283470776|emb|CAQ49987.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ST398] gi|283790408|gb|EFC29225.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus A017934/97] gi|285817178|gb|ADC37665.1| Site-specific recombinase XerD [Staphylococcus aureus 04-02981] gi|290920201|gb|EFD97267.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus M1015] gi|291095045|gb|EFE25310.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 58-424] gi|291466758|gb|EFF09278.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus M809] gi|294824553|gb|EFG40976.1| tyrosine recombinase XerD [Staphylococcus aureus A9754] gi|294968364|gb|EFG44388.1| tyrosine recombinase XerD [Staphylococcus aureus A8819] gi|296887800|gb|EFH26698.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177450|gb|EFH36702.1| tyrosine recombinase XerD [Staphylococcus aureus A8796] gi|297575845|gb|EFH94561.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus MN8] gi|298694781|gb|ADI98003.1| site-specific recombinase [Staphylococcus aureus subsp. aureus ED133] gi|300886110|gb|EFK81312.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus TCH70] gi|302751329|gb|ADL65506.1| site-specific recombinase XerD [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340643|gb|EFM06577.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438035|gb|ADQ77106.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus TCH60] gi|312829886|emb|CBX34728.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129770|gb|EFT85760.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus CGS03] gi|315195394|gb|EFU25781.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus CGS00] gi|315198812|gb|EFU29140.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus CGS01] gi|320140619|gb|EFW32473.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus MRSA131] gi|320144155|gb|EFW35924.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus MRSA177] gi|329314175|gb|AEB88588.1| Tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus T0131] gi|329725291|gb|EGG61778.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 21189] gi|329727344|gb|EGG63800.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 21172] Length = 295 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 103/304 (33%), Positives = 164/304 (53%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTI-RQLSYTEIRAFIS 76 + +L+ ++IE+GLS T+ +Y D +++ ++ TE I+ I I RQL + I Sbjct: 6 EEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYM---TEHHISHIDFIDRQLIQECLGHLID 62 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + ++ K S+ R +S I+SF ++ + K + + + + K LP LN + L Sbjct: 63 QGQSAK----SIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLA 118 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L L T K R+ +L LLY G+R+SE + L +N+ +R+ GKGDK Sbjct: 119 L-----LETPDLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDK 173 Query: 197 IRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RIVPL +V + + Y + + P L + LF + GKPL+ + I+Q Sbjct: 174 ERIVPLGDAVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKAN 233 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + T HTLRHSFATHLL NG DLR++Q +LGH +STTQ+YT+V+ + ++Y+ Sbjct: 234 IKKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYN 289 Query: 316 QTHP 319 Q HP Sbjct: 290 QFHP 293 >gi|193215186|ref|YP_001996385.1| tyrosine recombinase XerD [Chloroherpeton thalassium ATCC 35110] gi|193088663|gb|ACF13938.1| tyrosine recombinase XerD [Chloroherpeton thalassium ATCC 35110] Length = 305 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 101/306 (33%), Positives = 157/306 (51%), Gaps = 20/306 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ER LS+ T SY D ++L+++ + + + + ++ ++R FI++ Sbjct: 13 REFLNYLRLERNLSENTKASYAHDLTRYLLYV------QDSHENLDEVRAEDVRKFITEL 66 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYL----KKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 + S+ R++S I+S K+L K RK E IL K LP LN+++ Sbjct: 67 HDLGLEASSISRNISAIRSLHKFLSAEKKIRKNVAEEVILP----KLGKYLPTVLNQQEV 122 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 L++ + LH + + R+ AIL LY G+R+SE + L QN+ D RI GKG Sbjct: 123 DKLLE-MPLHPENPKPKLAIRDKAILEFLYATGVRVSELVELKQQNLFFDSGFARIFGKG 181 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 K R+VP+ S A+ Y L N LF RGK L +++ + Sbjct: 182 AKERLVPVGSSAIHAVETYQKTIRIKLVNRASADFLFLNARGKKLTRMSIYNIVQEYAQQ 241 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ S + HTLRHSFATHLL G DLRS+Q +LGH + TQIYT+V+ ++ E+ Sbjct: 242 AGIEKSISPHTLRHSFATHLLEGGADLRSVQEMLGHSSIKATQIYTHVDRA----FIKEV 297 Query: 314 YDQTHP 319 + HP Sbjct: 298 HKSFHP 303 >gi|190575908|ref|YP_001973753.1| site-specific tyrosine recombinase XerC [Stenotrophomonas maltophilia K279a] gi|190013830|emb|CAQ47468.1| putative integrase/recombinase [Stenotrophomonas maltophilia K279a] Length = 298 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 95/301 (31%), Positives = 157/301 (52%), Gaps = 21/301 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +LQ+L++ER +S TL +Y D L L+ + E + + L +R F++ Sbjct: 5 QAFLQHLQVERRMSAHTLDAYRRD----LDALSVWAEPRGV--AVEALDADALRQFVADE 58 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + +SL+R LS +SF +L K S ++ + LP+ L+ +A+ LV Sbjct: 59 HRRGLSAKSLQRRLSACRSFYAWLLKHGRIEVSPAATLKAPRAPRRLPQVLDADEAVQLV 118 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + L E + R+ A+L L Y GLR+SE +LT +++ D + + GKG++ R Sbjct: 119 E---LEPEGE---LGRRDRALLELFYSSGLRLSEVCALTWRDLDFDSGLVNVLGKGNRQR 172 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VP R+A+ + + P+F G R P++ Q IRQL + GL Sbjct: 173 RVPFGRPAREALQAWR----AESGGGPASPVFPG-RNGPISQRAVQIRIRQLAQRQGLFK 227 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 H LRHSFA+H+L + GDLR +Q +LGH ++TTQIYT+++ ++ + ++YD H Sbjct: 228 HVHPHMLRHSFASHILESSGDLRGVQELLGHADIATTQIYTHLDFQH----LAKVYDAAH 283 Query: 319 P 319 P Sbjct: 284 P 284 >gi|49084748|gb|AAT51227.1| PA5280 [synthetic construct] Length = 304 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 101/309 (32%), Positives = 156/309 (50%), Gaps = 27/309 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L++L ER +S TL Y R L LA EK + L +R F+++ Sbjct: 8 FLEHLRSERQVSAHTLDGYR---RDLLKILAL--AEKAGLSDWNALDTRSLRTFVARLHQ 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q RSL R LS + +YL + + K LPR L+ +AL L+D Sbjct: 63 QGQSSRSLARLLSATRGLYQYLLREGRCRHDPANGLSAPKSPRKLPRTLDADRALQLLDG 122 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + E +I R+ A+L L Y GLR+SE + L + + + +R++GKG+++R + Sbjct: 123 AV-----EDDFIARRDQALLELFYSSGLRLSELVGLDLEWLDLKEGLVRVRGKGNRVREL 177 Query: 201 PLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR-RYLG 255 P+ + R+A+ + L P D +F G GK L P Q +RQ R LG Sbjct: 178 PVGKAARQALEAWLPLRTQAAPEDG------AVFIGRSGKRLTPRAIQLRVRQAGVRELG 231 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 L H LRHSFA+HLL + GDLR++Q +LGH ++TTQIYT+++ ++ + +YD Sbjct: 232 QRLHP--HMLRHSFASHLLESSGDLRAVQELLGHADIATTQIYTHLDFQH----LASVYD 285 Query: 316 QTHPSITQK 324 + HP +K Sbjct: 286 RAHPRAKRK 294 >gi|305667659|ref|YP_003863946.1| putative tyrosine recombinase [Maribacter sp. HTCC2170] gi|88709709|gb|EAR01942.1| putative tyrosine recombinase [Maribacter sp. HTCC2170] Length = 298 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 101/303 (33%), Positives = 157/303 (51%), Gaps = 16/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q++ L IERGLS ++++Y D + + FL + I I+ + ++AFI + Sbjct: 8 QDFQHYLRIERGLSDNSIKNYVWDVEKLVGFLDV---NDMVISPIK-IDKETVQAFIYEI 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + I RS R +SG+KSF YL ++ + + + K LP L+E + L+ Sbjct: 64 -AKTINPRSQARIISGLKSFFNYLNFEDYRQDNPMDLLESPKIGRKLPDTLSEDEINQLI 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + L +K RN A+L LYGCGLR+SE + L ++ ++ +++ GKG+K R Sbjct: 123 DAIDL-----SKPEGERNRAMLETLYGCGLRVSELIGLKISDLFFEEDFIKVTGKGNKQR 177 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 VP+ +K I Y + LF RGK L + I+QL + L Sbjct: 178 FVPISDFNKKYINIYRKEIRVHQKIQKGFDDILFLNRRGKQLTRAMIFTIIKQLAVKIDL 237 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 S + HT RHSFATHLL NG DLR+IQ +LGH ++TT++Y +V+ + D M ++ Sbjct: 238 GKSISPHTFRHSFATHLLQNGADLRAIQQMLGHESITTTEVYMHVDRTHLADVM----NK 293 Query: 317 THP 319 HP Sbjct: 294 YHP 296 >gi|227431702|ref|ZP_03913732.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352526|gb|EEJ42722.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 298 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 93/301 (30%), Positives = 164/301 (54%), Gaps = 16/301 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L + IERGLS+ T++SY D QF +L EK+ + Q+ + I +++++ R Sbjct: 11 DYLHYIRIERGLSENTIKSYHQDLVQFGEYL---NGEKLVLD---QVDHIVILSWLNQLR 64 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + S+ R ++ +++F YL + K+ + + ++R KK+ LP L+ ++ Sbjct: 65 DLGKSNSSVIRMVTTLRNFFGYLVREKVVAHNPMNDVRPPKKAEHLPAVLSIEEI----- 119 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + LL E + RN ++ ++Y GLR+SE ++L ++ ++ GKGDK RI Sbjct: 120 DRLLQAPIEDTPLGLRNRTLIEVMYATGLRVSELVNLKMSDLHLQLGLIQTLGKGDKERI 179 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +P+ + Y++ L + + P +F RG ++ + I++L G+ Sbjct: 180 IPIGEIAIDWLTRYFNESRIVLLKDKESPYVFLNDRGNQISRQGIWKIIKKLVTTAGITK 239 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + HTLRHSFATH+L NG DLR +Q +LGH +STTQIYT+++ K + E+YD+ H Sbjct: 240 DVSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISKKR----LSEVYDEYH 295 Query: 319 P 319 P Sbjct: 296 P 296 >gi|329730857|gb|EGG67235.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 21193] Length = 295 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 103/304 (33%), Positives = 164/304 (53%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTI-RQLSYTEIRAFIS 76 + +L+ ++IE+GLS T+ +Y D +++ ++ TE I+ I I RQL + I Sbjct: 6 EEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYM---TEHHISHIDFIDRQLILECLGHLID 62 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + ++ K S+ R +S I+SF ++ + K + + + + K LP LN + L Sbjct: 63 QGQSAK----SIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLA 118 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L L T K R+ +L LLY G+R+SE + L +N+ +R+ GKGDK Sbjct: 119 L-----LETPDLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDK 173 Query: 197 IRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RIVPL +V + + Y + + P L + LF + GKPL+ + I+Q Sbjct: 174 ERIVPLGDAVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKAN 233 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + T HTLRHSFATHLL NG DLR++Q +LGH +STTQ+YT+V+ + ++Y+ Sbjct: 234 IKKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYN 289 Query: 316 QTHP 319 Q HP Sbjct: 290 QFHP 293 >gi|163791502|ref|ZP_02185908.1| integrase/recombinase XerD, putative [Carnobacterium sp. AT7] gi|159873225|gb|EDP67323.1| integrase/recombinase XerD, putative [Carnobacterium sp. AT7] Length = 296 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 100/303 (33%), Positives = 163/303 (53%), Gaps = 16/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ L IERGLSK T++SY+ D Q+L F+ E K+T Q+ + +F+ K Sbjct: 6 EEYLRFLTIERGLSKNTIESYKRDISQYLTFIE---ENKLTEWV--QIDRYVVLSFLQKL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + ++ R +S ++ F ++LK+ +++ +L++ KK+ LP+ L+ K+ V Sbjct: 61 KENQKSAGTIIRMISCLRQFHQFLKQEQLSLTDPMLHIDTPKKAQKLPKVLSIKE----V 116 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D L+ T + + + R+ A+L +LY GLR+SE L ++ ++ GKGDK R Sbjct: 117 DR-LIETPNTGETLGLRDRAMLEVLYATGLRVSELTELKLNDLHLSLGLIQTIGKGDKER 175 Query: 199 IVPLLPSVRKAILEY--YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 I+PL + I +Y Y + + LF G+ L + ++ L + G+ Sbjct: 176 ILPLGDMAIEWIEKYRRYSRSKLEKEGHRSPYLFLNHHGRKLTRQGVWKNLKILVKKAGI 235 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 T HTLRHSFATHLL NG DLR +Q +LGH +STTQIYT++ + M +Y Sbjct: 236 EKEVTPHTLRHSFATHLLENGADLRVVQELLGHSDISTTQIYTHITKQR----MSSVYKT 291 Query: 317 THP 319 HP Sbjct: 292 YHP 294 >gi|167579401|ref|ZP_02372275.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis TXDOH] Length = 306 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 90/319 (28%), Positives = 160/319 (50%), Gaps = 33/319 (10%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L NL R LS TL++Y + + + + + L+ ++R +++ Sbjct: 8 DYLSNLRHVRKLSDHTLRAYAHELGEL--------RKLANGRPLESLTAVDMRGAVARAH 59 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + RS+ LS ++F ++ + + + +R K++ +LP+AL+ A L+D Sbjct: 60 AGGLSARSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKRAKTLPKALSVDDAAALMD 119 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-----------QSTL 188 T+ R+ AIL L Y GLR++E + L + D ++ + Sbjct: 120 APTAGTAEHL-----RDHAILELFYSSGLRLAELIGLDVEYTKDGDYRSEGWLDLAEAEV 174 Query: 189 RIQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 ++GKGDK R VP+ RKAI L + + PLF +RG ++PGV + Sbjct: 175 TVRGKGDKERKVPV---GRKAIDALNAWLAVRGEFVKRDARPLFLSVRGNRMSPGVVRER 231 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 +++ G+P + H LRHSFATH+L + GDLR++Q +LGH +S TQ+YT+++ ++ Sbjct: 232 VKRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQH- 290 Query: 307 GDWMMEIYDQTHPSITQKD 325 + +IYD HP ++D Sbjct: 291 ---LAKIYDSAHPRAKKRD 306 >gi|332994410|gb|AEF04465.1| tyrosine recombinase [Alteromonas sp. SN2] Length = 305 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 91/285 (31%), Positives = 151/285 (52%), Gaps = 10/285 (3%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++ L +E+GLS T QSY D + IF I+ I L+ ++ +++ R Sbjct: 18 GFIDMLWLEKGLSDHTQQSYRTDLTKLAIFC-----NNQGIKDIAVLTTEMMQDYLAYRH 72 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + + RS +R++S +++F YL ++I ++ I ++ N K SLP +L+E+Q L+ Sbjct: 73 DKGLSARSTQRAMSALRAFYTYLIGKQIRVDNPISSLSNPKLPKSLPASLSERQVEDLLA 132 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 L+ I+ R+ ++L +LY GLR+SE + L + Q +R+ GKG+K R+ Sbjct: 133 APLIEDP-----IECRDKSMLEVLYATGLRVSELIGLQMSEVSLQQGVVRVTGKGNKDRL 187 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 VPL + +L Y L ++ RG+ + F I+ + Sbjct: 188 VPLGEDAIEWLLTYIKTARPVLATKQSDYVYLSKRGQKMTRQTFWHRIKYYAVKANIEQH 247 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ Sbjct: 248 LSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATE 292 >gi|146308415|ref|YP_001188880.1| site-specific tyrosine recombinase XerD [Pseudomonas mendocina ymp] gi|145576616|gb|ABP86148.1| tyrosine recombinase XerD subunit [Pseudomonas mendocina ymp] Length = 298 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 99/302 (32%), Positives = 149/302 (49%), Gaps = 16/302 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ L +E+GLS T +Y D F +L + +Q I I ++ R Sbjct: 10 ERFLETLWLEKGLSAHTRAAYRSDLEHFNHWL---DGRGLQLQCI---GRDAILDHLAWR 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q RS R LSG++ F ++L + + E L + + LP++L+E Sbjct: 64 LEQGYQARSTARFLSGVRGFYRFLLREGVVEEDPSLQVELPQIGRPLPKSLSEADV---- 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL I R+ A+L +LY CGLR+SE + LT + + Q LR+ GKG K R Sbjct: 120 -EALLQAPDLDDPIGLRDRAMLEVLYACGLRVSELVGLTLEQVNLRQGVLRVFGKGSKER 178 Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL I Y + P L LF +RG+ + F I+ + G+ Sbjct: 179 LVPLGEEAIAWIERYSREARPLLLGGKPSDVLFPSLRGEQMTRQTFWHRIKHQAKVAGIG 238 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 S + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT++ + E++ + Sbjct: 239 KSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIARAR----LQELHAKH 294 Query: 318 HP 319 HP Sbjct: 295 HP 296 >gi|293609893|ref|ZP_06692195.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828345|gb|EFF86708.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 304 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 92/306 (30%), Positives = 170/306 (55%), Gaps = 24/306 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL+ +I+ S+ T+ +YE D + FL F E K +R + +++R ++++R Sbjct: 11 WLKERKIQ-NQSEHTINAYERDVKSFLEF----CEHKQL--DLRNIEASDLREYLAQRVE 63 Query: 81 Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q ++ S++R L+ I+ F+K+ ++ K + + + ++ LP ++ + ++D Sbjct: 64 QDQLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILD 123 Query: 140 NVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + + + W+ R+ A+L LLY GLR++E LT +++ ++ +RI GKG+K R Sbjct: 124 QPMPEKPVDQQLWL--RDKAMLELLYSSGLRLAELQGLTVKDVDFNRQLVRITGKGNKTR 181 Query: 199 IVPLLPSVRKAILEYYDLCP-----FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 IVP ++++L + + FD N ++ F +RG L P ++ ++ + Sbjct: 182 IVPFGKKAKESLLNWLKVYKIWKGHFDQNDSV----FISLRGGALTPRQIEKRVKLQAQR 237 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ + H LRH FA+H+LS+ GDLRS+Q +LGH LSTTQIYT+++ D + ++ Sbjct: 238 AGVNVDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDF----DHLAQV 293 Query: 314 YDQTHP 319 YDQ HP Sbjct: 294 YDQAHP 299 >gi|163941832|ref|YP_001646716.1| site-specific tyrosine recombinase XerD [Bacillus weihenstephanensis KBAB4] gi|229013300|ref|ZP_04170441.1| Tyrosine recombinase xerD [Bacillus mycoides DSM 2048] gi|229061763|ref|ZP_04199096.1| Tyrosine recombinase xerD [Bacillus cereus AH603] gi|163864029|gb|ABY45088.1| tyrosine recombinase XerD [Bacillus weihenstephanensis KBAB4] gi|228717509|gb|EEL69173.1| Tyrosine recombinase xerD [Bacillus cereus AH603] gi|228748067|gb|EEL97931.1| Tyrosine recombinase xerD [Bacillus mycoides DSM 2048] Length = 296 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 93/304 (30%), Positives = 160/304 (52%), Gaps = 18/304 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++++ + +E+GL+K T+ SYE D + ++ +L + K T +++ I F+ Sbjct: 6 KDFIHYMIVEKGLAKNTVVSYERDLKSYVKYLQNVEQTK----TFHEVTRLHIVNFLQHL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + ++L R ++ I+SF ++L + + +++ + LP+ L+ + Sbjct: 62 KENGKSSKTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLS-------I 114 Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 D V LL T R+ A+L LLY GLR+SE ++L +++ +R GKG+K Sbjct: 115 DEVEALLQTPKTASAFGIRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNK 174 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RI+PL +AI +Y + +L + LF G L+ F + +++L + Sbjct: 175 ERIIPLGSLATEAIQKYIEKGRRELMGKKAVDALFLNHHGNRLSRQGFWKILKRLAKEAN 234 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V+ + ++Y Sbjct: 235 IAKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKDVYK 290 Query: 316 QTHP 319 Q HP Sbjct: 291 QFHP 294 >gi|256819226|ref|YP_003140505.1| tyrosine recombinase XerD [Capnocytophaga ochracea DSM 7271] gi|315224660|ref|ZP_07866483.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287] gi|256580809|gb|ACU91944.1| tyrosine recombinase XerD [Capnocytophaga ochracea DSM 7271] gi|314945288|gb|EFS97314.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287] Length = 303 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 106/313 (33%), Positives = 164/313 (52%), Gaps = 39/313 (12%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY--TEEKITIQ--TIRQLSYTEIRAF 74 QN+L+ ++RGLS+ T+ SY D + + +L Y TE TIQ T+RQ Y Sbjct: 10 QNYLR---LQRGLSQNTVVSYGLDIEKLIGYLEKYNITEPPDTIQVDTLRQFVYE----- 61 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 +SK ++ RS R +S +KSF K++ K + + + + K LP L+ K+ Sbjct: 62 VSK----ELNARSQARLISALKSFFKFMISEKGREDFPMSLIDSPKIGVKLPDTLSLKEI 117 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 ++ ++ L T RN AI+ LYGCGLR+SE +SL ++ ++ +R+ GKG Sbjct: 118 DAMLASIDLSTDE-----GHRNKAIIETLYGCGLRVSELVSLRLSDLFFEEDFIRVMGKG 172 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI--------RGKPLNPGVFQRY 246 K R+VP+ +K I Y + N QL + +G RGK L + Sbjct: 173 SKQRLVPIESYTQKQINNYIN------NQRKQLKIAKGHEDYVFLNRRGKQLTRAMIFTI 226 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 +RQ+ +GL + + HT RHSFATHLL NG +LR+IQ +LGH ++TT+IY +V Sbjct: 227 VRQVAENIGLQKTISPHTFRHSFATHLLENGANLRAIQMMLGHENITTTEIYVHVEK--- 283 Query: 307 GDWMMEIYDQTHP 319 ++ E + HP Sbjct: 284 -SYLREALVKYHP 295 >gi|194333360|ref|YP_002015220.1| integrase family protein [Prosthecochloris aestuarii DSM 271] gi|194311178|gb|ACF45573.1| integrase family protein [Prosthecochloris aestuarii DSM 271] Length = 335 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 103/321 (32%), Positives = 166/321 (51%), Gaps = 28/321 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT--EEKITIQTIRQLSYTEIRAFIS 76 + +L + +ER S+ T ++Y D QF F+ + +K I +S ++R F+ Sbjct: 21 KGFLDYVTLERHFSRHTREAYRTDICQFYTFIRYQHTLADKDPIDPA-SISVLDVRLFMG 79 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKR---KITTESNILNMRNLKKSNSLPRALNEKQ 133 + + + +S+ R L+ +KSF YL + K++ S ++ R S +P L+E++ Sbjct: 80 ELLEKGLQPKSIARKLAAVKSFYNYLLETGAVKVSVPSQVITPRF---SKPVPGFLSERE 136 Query: 134 ALTLVDNVL-LHTSHET---------KWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 L D +L L E + AR+ A+L +LYGCGLRISE + L +N+ Sbjct: 137 TEKLFDELLSLPAPGEALGAVRAGDGGFTYARDRALLEVLYGCGLRISEVIGLQYENVNL 196 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLP----LFRGIRGKPL 238 S LR+ GKG K RIVPL R A+ Y+++ F N + P +F +G+ + Sbjct: 197 QDSLLRVSGKGGKQRIVPLGGPARTALRNYFEVRRNFFRMKNEESPDASYVFVTKKGRRI 256 Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 P + QR R+ + H LRHSFATH+L++G DL+S+ +LGH L+TT+IY Sbjct: 257 YPVLVQRVTRKYLSAVTEIKYKNPHVLRHSFATHMLNSGADLKSVSEMLGHTNLTTTEIY 316 Query: 299 TNVNSKNGGDWMMEIYDQTHP 319 T+V + E+Y + HP Sbjct: 317 THVTFGR----IKEVYLKAHP 333 >gi|227513310|ref|ZP_03943359.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus buchneri ATCC 11577] gi|227083511|gb|EEI18823.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus buchneri ATCC 11577] Length = 295 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 94/303 (31%), Positives = 160/303 (52%), Gaps = 19/303 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L L +ERGLS+ T++SY+ D + + F T++ + L+Y E + Sbjct: 7 DYLHFLRVERGLSENTIKSYQQDLSEAIHFFQKTTKDISKVDQFLILNYLE------NLQ 60 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 +K ++ R++S +++F +YL + + + +L + + K+S +LP L+ + Sbjct: 61 QEKKSRNTVIRTVSSLRNFFRYLAQFGVVPDDPMLKVDSPKQSKTLPDVLSVSEV----- 115 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 N LL + +K + R+ A+L LY GLR+SE ++L ++ ++ GKGD+ RI Sbjct: 116 NKLLSMPNVSKPLGVRDRAMLETLYATGLRVSELVNLRLVDLHLPMKLIQTVGKGDRERI 175 Query: 200 VPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +P+ I +Y DL N +F G+ L + I++ + G+ Sbjct: 176 IPIGDVAIDWITQYLKTTRIDLLRKRTNTDF-VFLNAHGRRLTRQAIWQMIKKYVKLAGI 234 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 T HTLRHSFATHLL NG DLR +Q +LGH +STTQIYT+++ K+ + E+Y + Sbjct: 235 KRHVTPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHISHKH----LTEVYQK 290 Query: 317 THP 319 HP Sbjct: 291 FHP 293 >gi|300088077|ref|YP_003758599.1| tyrosine recombinase XerD [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527810|gb|ADJ26278.1| tyrosine recombinase XerD [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 303 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 93/301 (30%), Positives = 152/301 (50%), Gaps = 9/301 (2%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 N+L L +E+G S T +Y D Q F ++ + ++ +++ + Sbjct: 7 NFLNYLMVEKGFSGNTRDAYHNDLYQLADFSTRCLRQRGDQDLWDNFNRQDMLSYLLDLK 66 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + ++ R L+ KSF +L + ++ N+ + K LP A++ +Q L++ Sbjct: 67 ERNYAVTTVVRKLAAAKSFFSFLLEENKIRQNPTDNIESPKVGKPLPDAISVQQVKALLE 126 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 L E K R+ A+L LLY G+R+SE + L ++ D+ +R GKG+K RI Sbjct: 127 QPTLAGGPEAK----RDRAMLELLYASGMRVSELIGLDLADVDCDEEQVRCFGKGNKERI 182 Query: 200 VPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +P+ P + + EY + + P + N + LF RG+ L + +++ GL Sbjct: 183 IPIHPQAARIVSEYIEEVRPRLVRSNDEKALFLNRRGERLTRQGLWQILKEYAVAAGLNG 242 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 T HTLRHSFATH+L+ G DLRS+Q +LGH +STTQIYT++ S D + YD H Sbjct: 243 QVTPHTLRHSFATHMLNGGADLRSVQELLGHANISTTQIYTHLTS----DHIRRAYDSAH 298 Query: 319 P 319 P Sbjct: 299 P 299 >gi|312900737|ref|ZP_07760034.1| tyrosine recombinase XerD [Enterococcus faecalis TX0470] gi|295112966|emb|CBL31603.1| tyrosine recombinase XerD subunit [Enterococcus sp. 7L76] gi|311292218|gb|EFQ70774.1| tyrosine recombinase XerD [Enterococcus faecalis TX0470] gi|315169704|gb|EFU13721.1| tyrosine recombinase XerD [Enterococcus faecalis TX1342] Length = 296 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 96/304 (31%), Positives = 162/304 (53%), Gaps = 20/304 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L L+IERGLS T +SYE D ++++ FL ++ + + ++ I F+ Sbjct: 7 DYLHYLQIERGLSNNTRRSYERDLKKYVAFL-----QEQGLHSWDEVDRYMITEFLQSLH 61 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 ++ S+ R +S ++ F ++L++ +++ + + ++ + KK LP L+ VD Sbjct: 62 EEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLS-------VD 114 Query: 140 NV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 V L+ +K + RN AIL ++Y GLR+SE + + ++ L+ GKGDK Sbjct: 115 EVTRLIEAPDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKE 174 Query: 198 RIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RI+PL + I Y + L N + LF G+PL+ + ++Q+ R Sbjct: 175 RIIPLGDYAIQWIERYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREAQ 234 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + T HTLRHSFATHLL NG DLR +Q +LGH +STTQIYT++ + M ++Y Sbjct: 235 IEKNITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQR----MADVYK 290 Query: 316 QTHP 319 + P Sbjct: 291 EHFP 294 >gi|312110344|ref|YP_003988660.1| tyrosine recombinase XerD [Geobacillus sp. Y4.1MC1] gi|311215445|gb|ADP74049.1| tyrosine recombinase XerD [Geobacillus sp. Y4.1MC1] Length = 299 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 96/306 (31%), Positives = 161/306 (52%), Gaps = 16/306 (5%) Query: 17 ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 E +++L L +ER L+K T+ SYE D +++ A Y IQ+ +S I F+ Sbjct: 5 ELKDFLHYLTVERNLAKNTIVSYERDLKKY----AHYLRHVEQIQSWNDVSRLHIMQFLK 60 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + + +++ R ++ I+SF ++L + KI + +++ + + +LP+ L+ ++ Sbjct: 61 FLKEKGSSPKTIARHIASIRSFHQFLLREKIADQDPSVHIESPQMERTLPKVLSLEEVEA 120 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L++ +T I R+ A++ LLY G+R+SE ++L ++ +R GKG+K Sbjct: 121 LLEAPKTNTP-----IGIRDKAMIELLYATGMRVSELVNLNLSDVHLTMGFVRCYGKGNK 175 Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQLRRY 253 RIVP+ A+ Y + P +N + LF G L F + +++L + Sbjct: 176 ERIVPIGSMALDALKAYLETARPKLINPKKRATDALFLNHYGDRLTRQGFWKILKKLAKE 235 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 + T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V D + Sbjct: 236 ANIEKELTPHTLRHSFATHLLENGADLRAVQELLGHADISTTQIYTHVTKTRLKD----V 291 Query: 314 YDQTHP 319 Y Q HP Sbjct: 292 YKQFHP 297 >gi|313884807|ref|ZP_07818559.1| putative tyrosine recombinase XerC [Eremococcus coleocola ACS-139-V-Col8] gi|312619498|gb|EFR30935.1| putative tyrosine recombinase XerC [Eremococcus coleocola ACS-139-V-Col8] Length = 304 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 100/311 (32%), Positives = 165/311 (53%), Gaps = 18/311 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 ++ ++ E+ S LT Q+Y+ D ++F FLA +++ + +SY +IR FI+ Sbjct: 8 FITYIQDEKRYSPLTAQAYQRDLKEFAHFLASSGNDQV-----QSISYYDIRLFIAFLNE 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK-KSNSLPRALNEKQALTLVD 139 +++ S+ R LS ++SF K+++ + + N +++ N + K LP E + Sbjct: 63 KRLSRTSIARKLSTLRSFFKFMQV-ETKLDQNPMDLVNYQVKKQRLPDFFYEDEM----- 116 Query: 140 NVLLHTSHETKW-IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL + E++ + RN AIL +LY GLR+SE L + LR+ GKG+K R Sbjct: 117 QALLKAAAESEHPLALRNQAILEVLYASGLRVSECRLLELGQVDFLAQVLRVHGKGNKER 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 IVP+ S + + +Y L++ Q +F +GK L + + ++ L Sbjct: 177 IVPMSDSASQTMQDYIKYLRPKLDVTGQAKQVFLSNKGKTLTTRQVSQILNEIVAEGALN 236 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 LS H LRH+FATHLL+NG DLRS+Q +LGH LS+TQIYT++ D + E Y Sbjct: 237 LSIHPHKLRHTFATHLLNNGADLRSVQEMLGHADLSSTQIYTHITK----DKLRENYMHL 292 Query: 318 HPSITQKDKKN 328 HP ++ K++ Sbjct: 293 HPRAHRQTKED 303 >gi|325123125|gb|ADY82648.1| site-specific tyrosine recombinase [Acinetobacter calcoaceticus PHEA-2] Length = 295 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 90/306 (29%), Positives = 169/306 (55%), Gaps = 24/306 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL+ +I+ S+ T+ +YE D + FL F + +R + +++R ++++R Sbjct: 2 WLKERKIQ-NQSEHTITAYERDVKSFLEFCEHKQLD------LRNIEASDLREYLAQRVE 54 Query: 81 Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q ++ S++R L+ I+ F+K+ ++ K + + + ++ LP ++ + ++D Sbjct: 55 QDQLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILD 114 Query: 140 NVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + + + W+ R+ A+L LLY GLR++E LT +++ ++ +RI GKG+K R Sbjct: 115 QPMPEKPVDQQLWL--RDKAMLELLYSSGLRLAELQGLTVKDVDFNRQLVRITGKGNKTR 172 Query: 199 IVPLLPSVRKAILEYYDLCP-----FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 IVP ++++L + + FD N ++ F +RG L P ++ ++ + Sbjct: 173 IVPFGKKAKESLLNWLKVYKIWKGHFDQNDSV----FISLRGGALTPRQIEKRVKLQAQR 228 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ + H LRH FA+H+LS+ GDLRS+Q +LGH LSTTQIYT+++ D + ++ Sbjct: 229 AGVNVDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDF----DHLAQV 284 Query: 314 YDQTHP 319 YDQ HP Sbjct: 285 YDQAHP 290 >gi|254246904|ref|ZP_04940225.1| Phage integrase [Burkholderia cenocepacia PC184] gi|124871680|gb|EAY63396.1| Phage integrase [Burkholderia cenocepacia PC184] Length = 355 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 92/318 (28%), Positives = 162/318 (50%), Gaps = 33/318 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L NL+ R LS+ TL++Y + + A + + L+ ++R + + Sbjct: 58 YLSNLKHVRQLSEHTLRAYTHELDELKKLAAG--------RPLDALTAADMRGAVVRGHA 109 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS+ LS ++F ++ +R + + +R K+ SLP+AL+ A+ L+D Sbjct: 110 AGLSARSISHRLSAWRAFYRWFAQRVEMPANPVAGVRAPKREKSLPKALSVDDAVALMDA 169 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-----------QSTLR 189 L T+ R+ AIL L Y GLR++E + L + D ++ + Sbjct: 170 PLAGTTESI-----RDHAILELFYSSGLRLAELVGLDVRYTQADGYRSAGWLDLAEAEVT 224 Query: 190 IQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 ++GKG+K R VP+ KAI L + + + PLF +RG ++PGV + + Sbjct: 225 VRGKGNKERKVPV---GSKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMSPGVVRERV 281 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 ++ G+P + H LRHSFATH+L + GDLR++Q +LGH ++ TQIYT+++ ++ Sbjct: 282 KRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQH-- 339 Query: 308 DWMMEIYDQTHPSITQKD 325 + +IYD HP ++D Sbjct: 340 --LAKIYDSAHPRAKKRD 355 >gi|33594003|ref|NP_881647.1| site-specific tyrosine recombinase XerC [Bordetella pertussis Tohama I] gi|33564077|emb|CAE43345.1| putative integrase/recombinase [Bordetella pertussis Tohama I] gi|332383420|gb|AEE68267.1| site-specific tyrosine recombinase XerC [Bordetella pertussis CS] Length = 326 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 95/323 (29%), Positives = 156/323 (48%), Gaps = 27/323 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +WL++L+ R S TL Y D RQ + + +++ IR F+++ Sbjct: 16 DWLRHLQAHRRYSAHTLDGYTRDLRQLA------QQAAAAGLPLERVANGHIRHFVARLH 69 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q +G RSL R+L+ + F ++ + +R K LP+AL+ +Q L+D Sbjct: 70 AQGLGPRSLARALAAWRGFYQWWAPAAGLPGNPATGVRAPKAPRGLPKALSVEQTQVLLD 129 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL------TPQN-----IMDDQSTL 188 + + E + R+ A+ LLY GLR++E +SL TP+ + D + + Sbjct: 130 HAPARLATEPAAL--RDHAMFELLYSSGLRLAELVSLDLRYERTPEYESRSWLNRDDAEV 187 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL----FRGIRGKPLNPGVFQ 244 + GKG K R VP+ S A+ ++ P F G RG+ + P V Q Sbjct: 188 IVVGKGGKRRSVPVGQSALAALDKWLQARPQLAAAGAGAQDAAALFVGARGRRIAPRVVQ 247 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + +L + GLP H LRHSFA+H+L + DLR++Q +LGH +STTQ+YT ++ + Sbjct: 248 LQLARLAQAAGLPAHVHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQVYTRLDFQ 307 Query: 305 NGGDWMMEIYDQTHPSITQKDKK 327 + + YDQ HP +K + Sbjct: 308 H----LARAYDQAHPRAGRKTSR 326 >gi|239826606|ref|YP_002949230.1| site-specific tyrosine recombinase XerC [Geobacillus sp. WCH70] gi|239806899|gb|ACS23964.1| tyrosine recombinase XerC [Geobacillus sp. WCH70] Length = 300 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 103/306 (33%), Positives = 161/306 (52%), Gaps = 25/306 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +++ L++E+ S+ T+ Y+ D QF F+ + I + +++Y ++R +++K Sbjct: 11 FIEYLQVEKNYSQYTIVCYQRDVEQFFEFM-----NEQGIHHLHEVTYNDVRLYLTKLYE 65 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ--ALTLV 138 QK RS+ R +S ++SF K+L + K E+ KK +P L E++ L V Sbjct: 66 QKQSSRSISRKISSLRSFYKFLLREKKVKENPFALAALPKKEQKIPNFLYEQELEKLFYV 125 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 ++V I RN AIL LLY G+R+SE + +I ST+ I GKG+K R Sbjct: 126 NDV-------NTAIGQRNQAILELLYATGVRVSECCHIQLSDIDFSVSTILIHGKGNKQR 178 Query: 199 IVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNP-GVFQRYI-RQLRRY 253 VP ++A+ Y +L + LF RG PL P GV RYI ++ + Sbjct: 179 YVPFGRFAKEALERYIHHGRRELLQKAKSAHAYLFVNARGNPLTPRGV--RYILDEIVKK 236 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 L + + H LRH+FATHLL+ G D+R++Q +LGH LS+TQ+YT+V D + I Sbjct: 237 AALTQNISPHVLRHTFATHLLNEGADMRTVQELLGHAHLSSTQVYTHVTK----DRLRHI 292 Query: 314 YDQTHP 319 Y THP Sbjct: 293 YLHTHP 298 >gi|297616683|ref|YP_003701842.1| tyrosine recombinase XerD [Syntrophothermus lipocalidus DSM 12680] gi|297144520|gb|ADI01277.1| tyrosine recombinase XerD [Syntrophothermus lipocalidus DSM 12680] Length = 296 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 99/296 (33%), Positives = 152/296 (51%), Gaps = 14/296 (4%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L ERGLS+ TLQ+Y D FL+ Y E++ I I Q+ ++ F+ Sbjct: 12 LNFERGLSENTLQAYRRDIGSFLV----YCEKERGISDISQVKRHDVVDFLGWLLKGGRA 67 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 SL R+LS +KSF ++++K + + N+ + + LPR L+ + LL Sbjct: 68 YSSLARTLSALKSFFRFMQKERYILTNPTDNIESPQVVRRLPRVLSVSEV-----EKLLE 122 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + R+ A+L L+Y GLR+SE L+L ++I +R GKG K RIVP+ Sbjct: 123 QPNPVTVRGIRDRAMLELMYATGLRVSELLALQLEDINLVAGFVRCLGKGRKERIVPVNK 182 Query: 205 SVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 + + Y L +++ LF +GK L+ F + + R G+ H Sbjct: 183 TSVFWVERYISRSRNHLVKSSLERTLFVNAKGKKLSRQGFWKILNGYARQAGIEKEIHPH 242 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 TLRHSFATHLL NG DLR++Q +LGH +STTQIYT++ + E+Y+++HP Sbjct: 243 TLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHLTKSR----LREVYEKSHP 294 >gi|228473046|ref|ZP_04057803.1| tyrosine recombinase XerD [Capnocytophaga gingivalis ATCC 33624] gi|228275628|gb|EEK14405.1| tyrosine recombinase XerD [Capnocytophaga gingivalis ATCC 33624] Length = 301 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 100/316 (31%), Positives = 168/316 (53%), Gaps = 33/316 (10%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT----EEKITIQTIRQLSY 68 +LLK+ +++L+ IERG+S ++QSY D + ++ + E I+ +T+R+ Y Sbjct: 8 KLLKDFEHYLK---IERGMSPNSVQSYLFDLEKLSDYINLHQIEERPENISAETLREFVY 64 Query: 69 TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 ++++++ RS R +S +KSF KYL + + + K LP Sbjct: 65 ---------QQSKELQARSQSRLISSLKSFFKYLLLENYREDFPMEYIDTPKYGMKLPDT 115 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 L+ ++ L+ + L TS RN AI+ LYGCGLR+SE ++L ++ ++ + Sbjct: 116 LSVEEIDALIAGIDLSTSE-----GHRNRAIIETLYGCGLRVSELVNLHLSDLFFEEGFI 170 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-----RGKPLNPGVF 243 R+ GKGDK R+VP+ +K I Y ++ Q+ F I RGK L + Sbjct: 171 RVLGKGDKQRLVPISEYTQKQINNYIQHQRKEVP---QVKEFTDIVFLNRRGKQLTRAMI 227 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 I+Q +GL + + HT RHSFATHLL NG +LR+IQ +LGH ++TT+IYT+++ Sbjct: 228 FTIIKQTAAAIGLTKTISPHTFRHSFATHLLENGANLRAIQLMLGHESITTTEIYTHIDH 287 Query: 304 KNGGDWMMEIYDQTHP 319 ++ ++ + HP Sbjct: 288 ----SYLSQVVNTYHP 299 >gi|149372373|ref|ZP_01891561.1| integrase [unidentified eubacterium SCB49] gi|149354763|gb|EDM43326.1| integrase [unidentified eubacterium SCB49] Length = 295 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 97/310 (31%), Positives = 165/310 (53%), Gaps = 33/310 (10%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFL--AFYTEEKITIQTIRQLSYTEIRAFISK 77 +++ L +ER SK T+ +YE D F FL F E+ + + +Y+ IR++I Sbjct: 5 SFIDYLLLERNYSKHTIVAYERDLETFFKFLKTTFSEEDPVNV------NYSMIRSWIVC 58 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 Q I +RS+ R +S +K++ K+L K K T + + ++LK S + E T Sbjct: 59 LVEQGISNRSINRKVSSLKTYYKFLLKTKQITATPLAKHKSLKVSKKIQVPFYE----TE 114 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 +D V+ H T + AR+ I+ L YG G+R +E +SL +++ + +++ GK +K Sbjct: 115 IDEVITLLDHPTDFKTARDKLIVALFYGTGMRRAELISLKLKDVDLAEGVVKVLGKRNKE 174 Query: 198 RIVPLLPSVRKAILEYYDL--------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 R++PLLPSV K++ Y + L N L ++ + + +N G F ++ Sbjct: 175 RLIPLLPSVLKSVDLYLKFRKEIVVVDSDYLLLTNKGLKIYETLVYRLIN-GYFSTTSQK 233 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 +++ + H LRHSFATHLL+ G DL S++ +LGH L++TQ+YT+ N Sbjct: 234 VKK--------SPHILRHSFATHLLNEGADLNSVKELLGHASLASTQVYTH----NSIAT 281 Query: 310 MMEIYDQTHP 319 + E+Y +THP Sbjct: 282 LKEVYRKTHP 291 >gi|127511704|ref|YP_001092901.1| tyrosine recombinase XerD [Shewanella loihica PV-4] gi|126636999|gb|ABO22642.1| tyrosine recombinase XerD [Shewanella loihica PV-4] Length = 303 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 99/302 (32%), Positives = 153/302 (50%), Gaps = 16/302 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L +L +GLS TLQ+Y D F +L ++ ++ + Q E+R +++ R Sbjct: 15 EPFLDDLWAAKGLSDHTLQAYRSDLSHFDRYL---NKQGSSLLSTSQ---AEVRDYLALR 68 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ F KYL +K+ + ++ K + LP AL+E V Sbjct: 69 VEHGFAKTSSARLLSSLRRFYKYLLAKKLIEVDPMAMIKPPKLARKLPDALSEAD----V 124 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D +L + E ++AR+ A+L LLY GLR+SE + LT + Q +RI GKG K R Sbjct: 125 DRLLSEPNREDP-VEARDRAMLELLYASGLRVSELVGLTLDQMSLRQGVVRIVGKGSKER 183 Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP I +Y F+L +F RG + F I+ + G+ Sbjct: 184 LVPFGEQAGAEIEDYLKAARFELLKGKASDVVFPSKRGNMMTRQTFWHRIKLYAQRAGIA 243 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + +++ Sbjct: 244 VHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKAR----LAQLHQAH 299 Query: 318 HP 319 HP Sbjct: 300 HP 301 >gi|257089964|ref|ZP_05584325.1| phage integrase [Enterococcus faecalis CH188] gi|312903388|ref|ZP_07762568.1| tyrosine recombinase XerC [Enterococcus faecalis TX0635] gi|256998776|gb|EEU85296.1| phage integrase [Enterococcus faecalis CH188] gi|310633264|gb|EFQ16547.1| tyrosine recombinase XerC [Enterococcus faecalis TX0635] gi|315577626|gb|EFU89817.1| tyrosine recombinase XerC [Enterococcus faecalis TX0630] Length = 299 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 99/322 (30%), Positives = 159/322 (49%), Gaps = 28/322 (8%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 ME N PE+ + L+ +ERG S+ T ++Y+ D + F FL T Sbjct: 1 MEEKNWPELFARYLI-----------VERGYSEKTKKAYQEDIQHFFSFLK--TSGNDNY 47 Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 T+ L ++RA++S+ Q+ S+ R ++ ++SF ++ K + E+ + K Sbjct: 48 LTVEHL---DVRAYLSELYDQEYSRNSISRKIASLRSFYQFSLKNEAIQENPFSYVHMKK 104 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 K LPR EK+ + L ++ +D RN A+L +LYG G+R+SE +LT Sbjct: 105 KQLRLPRFFYEKEM-----DALFESAQGEHPLDLRNQALLEVLYGTGIRVSECANLTVDA 159 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKP 237 + S L + GKG+K R VP + A+ +Y + L Q +F G+ Sbjct: 160 VDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGRALLMTKYQKKHPYVFVNHHGEQ 219 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + P + + QL + L H LRH+FATHLL+NG D+R++Q +LGH LSTTQI Sbjct: 220 ITPTGIEYVLNQLIKKSSLNAEIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQI 279 Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319 Y +V ++ + + Y HP Sbjct: 280 YAHVTKES----LQKNYRTFHP 297 >gi|78067906|ref|YP_370675.1| site-specific tyrosine recombinase XerC [Burkholderia sp. 383] gi|77968651|gb|ABB10031.1| Tyrosine recombinase XerC [Burkholderia sp. 383] Length = 306 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 91/318 (28%), Positives = 166/318 (52%), Gaps = 33/318 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L NL+ R LS+ TL+ Y + + ++ + + L+ ++R +++ + Sbjct: 9 YLSNLKHVRQLSEHTLRGYTHELDEL--------KKLANGRPLEALTAADMRGAVARAHS 60 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS+ LS ++F ++L +R + + +R K++ +LP+AL+ A L++ Sbjct: 61 GGLSARSISHRLSAWRAFYRWLAQRIEMPANPVAAVRAPKRAKTLPKALSVDDASALMNA 120 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-----------QSTLR 189 L +T+ R+ AIL L Y GLR++E + L D ++ + Sbjct: 121 PLANTTEGI-----RDHAILELFYSSGLRLAELIGLDVMYTQADGYRSAGWLDLAEAEVT 175 Query: 190 IQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 ++GKG+K R VP+ RKAI L + + + PLF +RG ++PGV + + Sbjct: 176 VRGKGNKERKVPV---GRKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMSPGVVRERV 232 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 ++ G+P + H LRHSFATH+L + GDLR++Q +LGH +S TQ+YT+++ ++ Sbjct: 233 KRAALTAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYTSLDFQH-- 290 Query: 308 DWMMEIYDQTHPSITQKD 325 + +IYD HP ++D Sbjct: 291 --LAKIYDSAHPRAKKRD 306 >gi|295399051|ref|ZP_06809033.1| tyrosine recombinase XerD [Geobacillus thermoglucosidasius C56-YS93] gi|294978517|gb|EFG54113.1| tyrosine recombinase XerD [Geobacillus thermoglucosidasius C56-YS93] Length = 299 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 96/306 (31%), Positives = 161/306 (52%), Gaps = 16/306 (5%) Query: 17 ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 E +++L L +ER L+K T+ SYE D +++ A Y IQ+ +S I F+ Sbjct: 5 ELKDFLHYLTVERNLAKNTIVSYERDLKKY----AHYLRHVEQIQSWNDVSRLHIMQFLK 60 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + + +++ R ++ I+SF ++L + KI + +++ + + +LP+ L+ ++ Sbjct: 61 FLKEKGSSPKTIARHIASIRSFHQFLLREKIADQDPSVHIESPQMERTLPKVLSLEEVEA 120 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L++ +T I R+ A++ LLY G+R+SE ++L ++ +R GKG+K Sbjct: 121 LLEAPKTNTP-----IGIRDKAMIELLYATGMRVSELVNLNLSDVHLTMGFVRCYGKGNK 175 Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQLRRY 253 RIVP+ A+ Y + P +N + LF G L F + +++L + Sbjct: 176 ERIVPVGSMALDALKAYLETARPKLINPKKRTTDALFLNHYGDRLTRQGFWKILKKLAKE 235 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 + T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V D + Sbjct: 236 ANIEKELTPHTLRHSFATHLLENGADLRAVQELLGHADISTTQIYTHVTKTRLKD----V 291 Query: 314 YDQTHP 319 Y Q HP Sbjct: 292 YKQFHP 297 >gi|149913845|ref|ZP_01902377.1| tyrosine recombinase XerD [Roseobacter sp. AzwK-3b] gi|149812129|gb|EDM71960.1| tyrosine recombinase XerD [Roseobacter sp. AzwK-3b] Length = 323 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 98/333 (29%), Positives = 165/333 (49%), Gaps = 38/333 (11%) Query: 15 LKERQNW----LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70 +++ ++W L+ E G ++ TLQ+Y D F +LA + TI Q + Sbjct: 1 MRQGRHWISAFLEAQAAELGAAQNTLQAYARDLSDFDAWLASQGD------TIEQADQSR 54 Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 + A++ Q + + R LS IK ++ + ++ ++ + ++ +S LP+ L+ Sbjct: 55 VEAYLVHCDAQGLARATRARRLSAIKQLYRFAFEERLRDDNPAITIKGPGRSRKLPKTLS 114 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 EK+ L+ H T + RN+ ++ LLY G+R+SE ++L + L I Sbjct: 115 EKEVDLLLGAARTHGRSATDRV--RNTCLMELLYATGMRVSELVALPVAAARGNPQMLLI 172 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF------- 243 +GKG K R+VPL P R ++E+ L L GKP +P +F Sbjct: 173 RGKGGKERMVPLSPDARDVMVEW-------LKLRDAADAAARKAGKPGSPFLFPSSGKIG 225 Query: 244 ----QRY---IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 R+ I++L G+ P T HTLRH+FATHLL+NG DLR+IQ++LGH ++TT Sbjct: 226 HLTRHRFYMLIKELAVAGGVSPDKVTPHTLRHAFATHLLANGADLRAIQTLLGHADVATT 285 Query: 296 QIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328 +IYT+V + + E+ + HP +K+ Sbjct: 286 EIYTHVLEER----LRELVQEHHPLAVASRRKS 314 >gi|254521772|ref|ZP_05133827.1| tyrosine recombinase XerC [Stenotrophomonas sp. SKA14] gi|219719363|gb|EED37888.1| tyrosine recombinase XerC [Stenotrophomonas sp. SKA14] Length = 296 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 95/310 (30%), Positives = 160/310 (51%), Gaps = 21/310 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +LQ+L++ER +S TL +Y D L L+ + E + + L +R F++ Sbjct: 5 QAFLQHLQVERRMSAHTLDAYRRD----LDALSVWAEPRGM--AVEALDAETLRQFVADE 58 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + +SL+R LS +SF +L K S ++ + LP+ L+ +A+ LV Sbjct: 59 HRRGLSAKSLQRRLSACRSFYAWLLKHGRIEVSPAATLKAPRAPRRLPQVLDADEAVQLV 118 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + L E + R+ A+L L Y GLR+SE +LT +++ + + GKG++ R Sbjct: 119 E---LEPEGE---LGRRDRALLELFYSSGLRLSEVCALTWRDLDFASGLVNVMGKGNRQR 172 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VP R+A+ + + P+F G R P++ Q IRQL + GL Sbjct: 173 RVPFGRPAREALQAWR----AESGGGPASPVFPG-RNGPISQRAVQIRIRQLAQRQGLFK 227 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 H LRHSFA+H+L + GDLR +Q +LGH ++TTQIYT+++ ++ + ++YD H Sbjct: 228 HVHPHMLRHSFASHILESSGDLRGVQELLGHADIATTQIYTHLDFQH----LAKVYDAAH 283 Query: 319 PSITQKDKKN 328 P ++ K + Sbjct: 284 PRAKRRSKGD 293 >gi|161526251|ref|YP_001581263.1| site-specific tyrosine recombinase XerC [Burkholderia multivorans ATCC 17616] gi|189349035|ref|YP_001944663.1| site-specific tyrosine recombinase XerC [Burkholderia multivorans ATCC 17616] gi|160343680|gb|ABX16766.1| tyrosine recombinase XerC [Burkholderia multivorans ATCC 17616] gi|189333057|dbj|BAG42127.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616] Length = 306 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 94/318 (29%), Positives = 162/318 (50%), Gaps = 33/318 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L NL+ R LS+ TL++Y + + A + + L +IR +++ Sbjct: 9 YLSNLKYVRQLSEHTLRAYTHELDELKKLAAG--------RPLDTLVAADIRGAVARAHA 60 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS+ LS ++F ++L +R + + +R K+ +LP+AL+ A L+D Sbjct: 61 GGLSARSISHRLSAWRAFYRWLAQRVEMPANPVAAVRAPKRPKTLPKALSVDDASALMDA 120 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT----------PQNIMD-DQSTLR 189 L T+ R+ AIL L Y GLR++E + L +D ++ + Sbjct: 121 PLADTTEGI-----RDHAILELFYSSGLRLAELIGLDVAYTQTGDYRSAGWLDLAEAEVT 175 Query: 190 IQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 ++GKG+K R VP+ RKAI L + + + PLF +RG ++PGV + + Sbjct: 176 VRGKGNKERKVPV---GRKAIDALNAWLAVRGEFVKHDPHPLFLSVRGNRMSPGVVRERV 232 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 ++ G+P H LRHSFATH+L + GDLR++Q +LGH +S TQ+YT+++ ++ Sbjct: 233 KRAALAAGIPAHVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYTSLDFQH-- 290 Query: 308 DWMMEIYDQTHPSITQKD 325 + +IYD HP ++D Sbjct: 291 --LAKIYDSAHPRAKKRD 306 >gi|227510303|ref|ZP_03940352.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189955|gb|EEI70022.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 295 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 94/303 (31%), Positives = 160/303 (52%), Gaps = 19/303 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L L +ERGLS+ T++SY+ D + + F T++ + L+Y E + Sbjct: 7 DYLHFLRVERGLSENTIKSYQQDLSEAIHFFQKTTKDISKVDQFLILNYLE------NLQ 60 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 +K ++ R++S +++F +YL + + + +L + + K+S +LP L+ + Sbjct: 61 QEKKSRNTVIRTVSSLRNFFRYLAQFGVVPDDPMLKVDSPKQSKTLPDVLSVSEV----- 115 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 N LL + +K + R+ A+L LY GLR+SE ++L ++ ++ GKGD+ RI Sbjct: 116 NKLLSMPNVSKPLGVRDRAMLETLYATGLRVSELVNLRLVDLHLPMKLIQTVGKGDRERI 175 Query: 200 VPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +P+ I +Y DL N +F G+ L + I++ + G+ Sbjct: 176 IPIGDVAIDWITKYLKTTRIDLLRKRTNTDF-VFLNAHGRRLTRQAIWQMIKKYVKLAGI 234 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 T HTLRHSFATHLL NG DLR +Q +LGH +STTQIYT+++ K+ + E+Y + Sbjct: 235 KRHVTPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHISHKH----LTEVYQK 290 Query: 317 THP 319 HP Sbjct: 291 FHP 293 >gi|304389803|ref|ZP_07371762.1| integrase/recombinase XerD [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315657108|ref|ZP_07909992.1| integrase/recombinase XerD [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|304326979|gb|EFL94218.1| integrase/recombinase XerD [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492211|gb|EFU81818.1| integrase/recombinase XerD [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 323 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 102/330 (30%), Positives = 159/330 (48%), Gaps = 20/330 (6%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY-TEEKIT 59 M NN + + E+ + WL + RGLS T+++Y D R+ + FL + + Sbjct: 1 MSENNPAAVFAREITADFGQWL---SVNRGLSPQTVRAYLTDLRELMTFLVDSDSGDGPA 57 Query: 60 IQTIRQ--LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117 Q +R + IRA++ + +L R ++ ++F + + R I N+R Sbjct: 58 AQQLRADLANPARIRAWLGAMSRAGMSRATLARRVASFRTFASWAQVRGIVPGDAGQNLR 117 Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW----IDARNSAILYLLYGCGLRISEA 173 + N+LP L+ A L++ E + R+ A L LLY G+R+SE Sbjct: 118 ASRPDNALPTVLSATDAAHLLETARAAAYPEASTAPNPVKLRDWAALELLYATGIRVSEL 177 Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----L 229 L NI Q T+R+ GKGDK R+VP A+ EY + L +N + P + Sbjct: 178 TGLELGNINKSQRTVRVTGKGDKQRVVPYGIPAGLALEEYLEKGRPAL-VNPEKPALNRV 236 Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289 F G +G L+ + + + +L G+P H LRH+ ATHLL G DLRS+Q ILGH Sbjct: 237 FLGAKGGMLDTRIVRGMLHRLTAQAGVP-DLGPHGLRHTAATHLLDGGADLRSVQEILGH 295 Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 L+TTQ YT+++ D + +Y Q HP Sbjct: 296 ASLATTQRYTHLSM----DKLRAVYLQAHP 321 >gi|197116868|ref|YP_002137295.1| site-specific recombinase, XerC [Geobacter bemidjiensis Bem] gi|197086228|gb|ACH37499.1| site-specific recombinase, XerC [Geobacter bemidjiensis Bem] Length = 293 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 105/310 (33%), Positives = 149/310 (48%), Gaps = 31/310 (10%) Query: 17 ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 E + + LE ER +S TL +Y D QFL FLA E ++ + IR +++ Sbjct: 4 ELEQFYSYLETERNVSPHTLAAYRSDLEQFLSFLARERE----APRAEEVDHLAIRRYLA 59 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + + S+ R LS I++ +YL + ++ + KK LP LN Q Sbjct: 60 QLH-KGCAKSSIGRKLSAIRALFRYLMREGKLEKNPAELVSTPKKEKRLPFHLNIDQVSA 118 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTL-RIQGK 193 LV + + R+ A+L LY CG+R+SE LT N+ MD + L R+ GK Sbjct: 119 LVT-----APAGSSGLPLRDRAVLETLYSCGIRVSE---LTGMNVGDMDLAAGLARVMGK 170 Query: 194 GDKIRIVPLLPSVRKAILEY----YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 G K R+VP+ R A+ Y D P + PL RG L R + Sbjct: 171 GGKERLVPVGSCARSALAAYLAERADPGPAE-------PLILNARGGRLTRRSVARIVDA 223 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 + + HTLRH+FATHLL G DLR+IQ +LGH LSTTQ YT+V+ D Sbjct: 224 HMLLIAAMRKVSPHTLRHTFATHLLEGGADLRAIQELLGHASLSTTQKYTHVSI----DK 279 Query: 310 MMEIYDQTHP 319 +ME+YD+ HP Sbjct: 280 LMEVYDKAHP 289 >gi|257095701|ref|YP_003169342.1| tyrosine recombinase XerC [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048225|gb|ACV37413.1| tyrosine recombinase XerC [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 304 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 97/307 (31%), Positives = 159/307 (51%), Gaps = 20/307 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L +R LS T+ +Y D + E + + IR F++ T Sbjct: 13 YLDELAGQRRLSPHTVSNYRHDLETLCALIG----ELPSDSGFAAIETHHIRRFVAILHT 68 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + +G RSL R+LS + F ++L +R +TT + + ++R K LP+AL+ +A N Sbjct: 69 RGLGGRSLGRTLSAWRGFYRWLVQRGMTTLNPVDSVRPPKSPKGLPKALSPDEA-----N 123 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-QSTLRIQGKGDKIRI 199 LL E ++ R+ AI L Y GLR++E +L + D +R+ GK +K+RI Sbjct: 124 RLLAAQSEN-LLEIRDQAIFELFYSSGLRLAELAALDIGCLEDLLAGEVRVLGKRNKLRI 182 Query: 200 VPLLPSVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 VP+ R+A+ + C L + LF G RG+ L + Q + + R GLP Sbjct: 183 VPVGSQAREAVALWAGQRAC---LAAADETALFVGQRGRRLGVRMIQLRLLRRGRAQGLP 239 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 H LRHSFA+H+L + GDLR++Q +LGH +++TQ+YT+++ ++ + +YDQ Sbjct: 240 ARVHPHMLRHSFASHVLQSSGDLRAVQEMLGHASIASTQVYTHLDFQH----LAAVYDQA 295 Query: 318 HPSITQK 324 HP +K Sbjct: 296 HPRAKRK 302 >gi|237746680|ref|ZP_04577160.1| site specific integrase/recombinase [Oxalobacter formigenes HOxBLS] gi|229378031|gb|EEO28122.1| site specific integrase/recombinase [Oxalobacter formigenes HOxBLS] Length = 326 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 99/327 (30%), Positives = 160/327 (48%), Gaps = 29/327 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L L +R LS TL SY D Q E + +LS T+IR F+S+ Sbjct: 12 KSYLDTLSGQRKLSGNTLDSYRRDLAQL--------TEMAGETGLNRLSSTDIRRFVSRL 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + RS+ R LS + F ++L + + + ++ KKS LP+AL+ A+ LV Sbjct: 64 HASGLSPRSIGRKLSAWRGFFQWLVDEALLSTNPAEDIHAPKKSKPLPKALSVDDAVRLV 123 Query: 139 DNVLLHTSHETKWIDAR--NSAILYLLYGCGLRISEALSLTPQNIMD-----------DQ 185 + T+ + A + A+ LLY GLR+SE L Q + ++ Sbjct: 124 SSGPADTNASSAGQAAALCDRAMFELLYSSGLRVSELTGLDIQAVRQAGYVSAGWIDLNE 183 Query: 186 STLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241 + + GKG+K RIVP + +VR + +L + LF RGK ++P Sbjct: 184 KEVTVTGKGNKTRIVPAGDAAITAVRNWLAARDNLVHPEALPRDAFALFVNSRGKRISPR 243 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 Q ++ + LGLP++ H LRHSFA+H+L + GDLR++Q +LGH +++TQIYT + Sbjct: 244 QVQLRLKAHAKRLGLPVNVHPHVLRHSFASHILQSSGDLRAVQEMLGHSSIASTQIYTAL 303 Query: 302 NSKNGGDWMMEIYDQTHPSITQKDKKN 328 + ++ + +YD HP K N Sbjct: 304 DFQH----LAAVYDSAHPRAKTKKSGN 326 >gi|312797553|ref|YP_004030475.1| integrase/recombinase (XerC/CodV family) [Burkholderia rhizoxinica HKI 454] gi|312169328|emb|CBW76331.1| Integrase/recombinase (XerC/CodV family) [Burkholderia rhizoxinica HKI 454] Length = 312 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 100/323 (30%), Positives = 163/323 (50%), Gaps = 43/323 (13%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +L ER LS TL+ Y + L LA E + QL+ ++R +S+ + Sbjct: 11 YLDSLAHERRLSAHTLRGYAHEL-DMLRQLAGTRE-------LTQLTPVDVRGAVSRAHS 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS+ LS +SF ++L + T + + +R K++ +LP+AL+ A+TL++ Sbjct: 63 GGLSPRSIAHRLSVWRSFYRWLALHQPLTMNPVAGVRAPKRAKTLPKALSVDDAVTLMEA 122 Query: 141 VLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQ-----------STL 188 + T DA R+ A+L L Y CGLR++E + L + Q + + Sbjct: 123 SCIETP------DALRDRAMLELFYSCGLRLAELIGLDIAFVNTAQYRSVGWIDLGTADV 176 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL------PLFRGIRGKPLNPGV 242 + GKG K R VP+ A+ + L + QL PLF RG ++ GV Sbjct: 177 TVLGKGGKRRTVPIGSKALDALHRW-------LAVRDQLLKHDPHPLFLSARGMRMSAGV 229 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + +R+ G+P H LRHSFATHLL + GDLR++Q +LGH ++ TQ+YT+++ Sbjct: 230 VRERVRRAALAAGVPSHVHPHVLRHSFATHLLQSSGDLRAVQELLGHASVAATQVYTSLD 289 Query: 303 SKNGGDWMMEIYDQTHPSITQKD 325 ++ + IYDQ HP ++D Sbjct: 290 FQH----LARIYDQAHPRAKKRD 308 >gi|15678913|ref|NP_276030.1| integrase-recombinase protein [Methanothermobacter thermautotrophicus str. Delta H] gi|73920472|sp|O26979|XERCL_METTH RecName: Full=Probable tyrosine recombinase xerC-like gi|2621988|gb|AAB85391.1| integrase-recombinase protein [Methanothermobacter thermautotrophicus str. Delta H] Length = 311 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 100/308 (32%), Positives = 157/308 (50%), Gaps = 34/308 (11%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA----FYTEE 56 +E N PE++ +++L LEI R S T+++Y+ + F FL Y + Sbjct: 18 LERYNFPELI--------EDYLIELEI-RNYSPNTIKTYKSIVKNFYEFLMNEDDLYDDR 68 Query: 57 KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116 ++ R + Y +R +K+ + +K F ++ + + + Sbjct: 69 RVLRSFKRYIQYL--------KRDKKVTQNYIYLVTVVVKKFFEF------SGIDCLEEV 114 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHET--KWIDARNSAILYLLYGCGLRISEAL 174 + K++ SLP++LNE + +L++ V + ++I R+ IL LLY GLR+SE + Sbjct: 115 KAPKRTKSLPKSLNEDEVKSLINAVEVADDGSVIRRFIKTRDRLILSLLYSSGLRVSELV 174 Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234 SL +I D+ T+RI+GKGDK RIV + R +++Y ++ LF Sbjct: 175 SLRINDIDPDERTIRIRGKGDKDRIVLFDENTRDLLMDY-----LKRRIHESEYLFLNRF 229 Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 G PL P Q I+ R G+ T H LRHSFATHLL NG D+R+IQ +LGH LST Sbjct: 230 GDPLTPRYVQMMIKNYARKAGIKKKVTPHILRHSFATHLLKNGVDIRAIQQLLGHSNLST 289 Query: 295 TQIYTNVN 302 TQIYT+V+ Sbjct: 290 TQIYTSVD 297 >gi|255026410|ref|ZP_05298396.1| hypothetical protein LmonocytFSL_08880 [Listeria monocytogenes FSL J2-003] Length = 290 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 91/292 (31%), Positives = 155/292 (53%), Gaps = 23/292 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L L +ERGLS T+++YE D F+ ++ E + L ++I F++ Sbjct: 6 EDFLHFLIVERGLSANTIKAYERDLHYFVSYMDVTKE----LTDPNTLERSDIVGFMAFA 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + RS+ R ++ ++SF YL + ++ + K++ LP+ LN + Sbjct: 62 RQEGKSPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAKGLPKVLN-------L 114 Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 D+V LL +S + + R+ A++ +LY GLR++E +SL ++ ++ GKGDK Sbjct: 115 DDVEKLLSSSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDK 174 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI------RGKPLNPGVFQRYIRQL 250 RI+PL + + +Y + + ++ P +R G+ L F + ++ + Sbjct: 175 ERIIPLGKTATTVLEKYLE----EARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGI 230 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + G+ T HTLRHSFATHLL NG DLRS+Q +LGH +STTQIYT+V Sbjct: 231 AKESGIEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVT 282 >gi|193212222|ref|YP_001998175.1| integrase family protein [Chlorobaculum parvum NCIB 8327] gi|254799328|sp|B3QM22|XERC_CHLP8 RecName: Full=Tyrosine recombinase xerC gi|193085699|gb|ACF10975.1| integrase family protein [Chlorobaculum parvum NCIB 8327] Length = 336 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 102/327 (31%), Positives = 169/327 (51%), Gaps = 39/327 (11%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-EKITIQTIRQLSYTEIRAFISK 77 + +L +L+ R +S T+ +Y CD Q+ FL +++ ++ ++R F+ Sbjct: 21 EPFLSHLQAARNVSPKTVTAYRCDLLQYFSFLKEQAGLDRLEAVEPERVEVADVRLFMGH 80 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 + I RS+ R L+ +KSF ++L + + S + + + +PR ++E++A L Sbjct: 81 LLDKGIQPRSIARKLASVKSFYRFLLETGRISSSPLSLVVTPRLDKKVPRFVSEEEARQL 140 Query: 138 V-------DNVLLH---TSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 DN L E + + R+ A+L +LYGCGLR+SE ++L ++ Sbjct: 141 FRRFESQEDNAALQGDGKKAEVRQFETFRDRAVLEVLYGCGLRLSELIALERADVDLVHG 200 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-QLPL---------FRGIRGK 236 L++ GKG K RIVPL +A+ +Y F++ N ++PL F RG+ Sbjct: 201 FLKVTGKGRKQRIVPLGEPAVEALRKY-----FEVRRNFFRIPLERTGESSRVFVTSRGR 255 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTT----AHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 L P + QR + RYL P+S + H LRHSFATH+L+ G DL+S+ +LGH L Sbjct: 256 QLYPMLVQRMTK---RYL-TPVSESEKKNPHILRHSFATHMLNGGADLKSVSEMLGHSSL 311 Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHP 319 +TT++YT+V + EIYD+ HP Sbjct: 312 TTTELYTHVTFSR----LKEIYDKAHP 334 >gi|149181661|ref|ZP_01860154.1| site-specific tyrosine recombinase XerD [Bacillus sp. SG-1] gi|148850639|gb|EDL64796.1| site-specific tyrosine recombinase XerD [Bacillus sp. SG-1] Length = 297 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 92/306 (30%), Positives = 161/306 (52%), Gaps = 21/306 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q+++ L +E+GL+K ++ SY+ D + ++ F+ + + ++ + I F+ Sbjct: 6 QDYIHFLIVEKGLAKNSVDSYQRDLKNYMKFI----QNVDSAESWNDVQRVNITGFLGHL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + +++ R ++ I+SF ++L + K+T + +++ + K SLP+ L+ + Sbjct: 62 KNEGKSAKTVARHVASIRSFHQFLLREKVTDQDPSIHIESPKMERSLPKVLS-------I 114 Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 D V LL E+ + R+ A+L +LY G+R+SE + L ++ +R GKG+K Sbjct: 115 DEVEALLEAPQESSALGIRDKAMLEVLYATGIRVSELIRLKMDDVHLKMGFVRCIGKGNK 174 Query: 197 IRIVPLLPSVRKAILEYYDL---CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 RI+P+ + +LE Y L + LF GK L+ F + ++ L Sbjct: 175 ERIIPIGKAA-ITVLEKYLLEGRPKLVSKKHKDDSLFLNHHGKGLSRQGFWKILKGLAAE 233 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 + T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V M ++ Sbjct: 234 AKITKELTPHTLRHSFATHLLENGADLRAVQEMLGHVDISTTQIYTHVTKTR----MKDV 289 Query: 314 YDQTHP 319 Y + HP Sbjct: 290 YSKFHP 295 >gi|15615028|ref|NP_243331.1| integrase/recombinase [Bacillus halodurans C-125] gi|34223073|sp|Q9KA25|XERC_BACHD RecName: Full=Tyrosine recombinase xerC gi|10175085|dbj|BAB06184.1| integrase/recombinase [Bacillus halodurans C-125] Length = 303 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 99/304 (32%), Positives = 154/304 (50%), Gaps = 19/304 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L++E+ S T+ +YE D R F F+ E+ +I + +SY +R +++ Sbjct: 12 FLLYLKMEKNHSPHTIVNYELDLRHFRDFM-----EQQSIPSFAAVSYAFVRHYLTVLYE 66 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q+ ++ R LS ++SF ++L + K E+ L K LP L E++ L+D Sbjct: 67 QEYARSTVSRKLSTLRSFYQFLVREKWVMENPFLLAHTPKGVKKLPSFLYEEEMEQLLDA 126 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + + + RN A+ +Y GLR+SE L Q++ T+ + GKG K R V Sbjct: 127 L-----NGDSPLQLRNRALFETIYASGLRVSECCGLKLQDVDLSIGTVFVFGKGRKERYV 181 Query: 201 PLLPSVRKAILEYYDLCPFDL---NLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLG 255 P+ AI EY + L + ++ LP LF RG PL ++ + Q Sbjct: 182 PIGSFACDAIQEYIENGREKLLKKSKSVDLPGDLFLNYRGGPLTERGVRKILHQALDQAA 241 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 L + H+LRHSFATHLL+NG DLR +Q +LGH LSTTQ+YT+V D + ++Y Sbjct: 242 LSTRVSPHSLRHSFATHLLNNGADLRVVQDLLGHENLSTTQVYTHVTK----DRLRDVYR 297 Query: 316 QTHP 319 HP Sbjct: 298 THHP 301 >gi|229824242|ref|ZP_04450311.1| hypothetical protein GCWU000282_01546 [Catonella morbi ATCC 51271] gi|229786596|gb|EEP22710.1| hypothetical protein GCWU000282_01546 [Catonella morbi ATCC 51271] Length = 331 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 98/304 (32%), Positives = 157/304 (51%), Gaps = 15/304 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +LQ + +ER S+ TL +Y+ D F F+ E ++Q++Y ++R +++ Sbjct: 37 FLQYISVERRYSQKTLAAYQQDLAAFQSFI-----ETSGGGDLKQIAYQDVRLYLAYLNE 91 Query: 81 QKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q S++R LS ++SF Y L + I T L +KK +LP+ E++ L D Sbjct: 92 QAYAKTSIRRKLSSLRSFFTYCLSQGWIETNPMELVQYQVKK-KTLPQFFYEQELTQLFD 150 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + L + W R+ +L +LY G+R+SE L+ + + + +R+ GKG+K RI Sbjct: 151 S-LYKREDDAAW---RDRMLLEVLYATGMRVSELSELSLERLNLEVQLIRVLGKGNKERI 206 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 VPL S +AI +Y ++ N L +G P++P + ++ L + L Sbjct: 207 VPLGDSATQAIRDYLSHLRPKIDRNNSPYLLLTDKGAPMSPRQIRTRLKSLVEEQAMNLK 266 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHSFATHLL+ G DLR++Q +LGH LS+TQIYT+V D + Y + HP Sbjct: 267 IYPHKLRHSFATHLLNKGADLRTVQELLGHANLSSTQIYTHVTK----DQLRSQYLKAHP 322 Query: 320 SITQ 323 Q Sbjct: 323 RAKQ 326 >gi|294501141|ref|YP_003564841.1| tyrosine recombinase XerD [Bacillus megaterium QM B1551] gi|294351078|gb|ADE71407.1| tyrosine recombinase XerD [Bacillus megaterium QM B1551] Length = 297 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 98/306 (32%), Positives = 159/306 (51%), Gaps = 21/306 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q+++ L +ERGL+K T+ SYE D +++ A Y E +++ +++ I F+ Sbjct: 6 QDFIHYLVVERGLAKNTIDSYERDLKKY----AQYLEHVEQLKSFNEVTRLHIVNFLKYL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q+ +++ R ++ +SF ++L + K +++ + LP+ LN ++ Sbjct: 62 SDQQKSSKTIARHVASTRSFHQFLLREKAADTDPSVHIDTPQLERKLPKVLNAEEV---- 117 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL---RIQGKGD 195 LL+ + R+ A+L LLY G+R+SE ++L NI D T+ R GKG+ Sbjct: 118 -EALLNVFDTSTPFGIRDKAMLELLYATGIRVSELVNL---NIDDAHLTMGFIRCIGKGN 173 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQLRRY 253 K RIVP+ +AI EY L + LF G+ L F + +++L Sbjct: 174 KERIVPIGRLATEAIEEYLQHSRSVLTKQKEQDKALFVNHHGRRLTRQGFWKILKKLASE 233 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 + T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V + ++ Sbjct: 234 AKIEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKAR----LKDV 289 Query: 314 YDQTHP 319 Y+Q HP Sbjct: 290 YNQFHP 295 >gi|312903284|ref|ZP_07762464.1| tyrosine recombinase XerD [Enterococcus faecalis TX0635] gi|310633160|gb|EFQ16443.1| tyrosine recombinase XerD [Enterococcus faecalis TX0635] Length = 296 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 96/304 (31%), Positives = 163/304 (53%), Gaps = 20/304 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L L+IERGLS T +SYE D ++++ FL ++ + + ++ I F+ Sbjct: 7 DYLHYLQIERGLSNNTRRSYERDLKKYVAFL-----QEQGLHSWDEVDRYMITEFLQSLH 61 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 ++ S+ R +S ++ F ++L++ +++ + + ++ + KK LP L+ VD Sbjct: 62 EEQQASASVIRMISSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLS-------VD 114 Query: 140 NV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 V L+ T +K + RN AIL ++Y GLR+SE + + ++ L+ GKGDK Sbjct: 115 EVTRLIETPDTSKPLGMRNRAILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKE 174 Query: 198 RIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RI+PL + I Y + L N + LF G+PL+ + ++++ R Sbjct: 175 RIIPLGDYAIQWIERYMNEARPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKRIVREAR 234 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + T HTLRHSFATHLL NG DLR +Q +LGH +STTQIYT++ + M ++Y Sbjct: 235 IEKNITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQR----MADVYK 290 Query: 316 QTHP 319 + P Sbjct: 291 EHFP 294 >gi|239827607|ref|YP_002950231.1| site-specific tyrosine recombinase XerD [Geobacillus sp. WCH70] gi|239807900|gb|ACS24965.1| tyrosine recombinase XerD [Geobacillus sp. WCH70] Length = 299 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 95/306 (31%), Positives = 161/306 (52%), Gaps = 16/306 (5%) Query: 17 ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 E +++L L +ER L+K T+ SYE D +++ A Y IQ+ ++ I F+ Sbjct: 5 ELKDFLHYLTVERNLAKNTIISYERDLKKY----AHYLRHVEQIQSWNDVTRLHIMQFLK 60 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + + +++ R ++ I+SF ++L + K+ + +++ + + +LP+ L+ ++ Sbjct: 61 FLKEKGNSPKTIARHIASIRSFHQFLLREKVAEQDPSVHIESPQMERTLPKVLSLEEVEA 120 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L++ +T I R+ A+L LLY G+R+SE ++L ++ +R GKG K Sbjct: 121 LLEAPKTNTP-----IGVRDKAMLELLYATGMRVSELVNLNLSDVHLTMGFVRCYGKGKK 175 Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQLRRY 253 RIVP+ A+ Y + P +N + LF G+ L F + +++L + Sbjct: 176 ERIVPVGSMALNALKVYLETARPKLINSKKRTTDALFLNHHGERLTRQGFWKILKKLAKE 235 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 + T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V D + Sbjct: 236 ANIEKELTPHTLRHSFATHLLENGADLRAVQELLGHADISTTQIYTHVTKTRLKD----V 291 Query: 314 YDQTHP 319 Y Q HP Sbjct: 292 YKQYHP 297 >gi|167835019|ref|ZP_02461902.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis MSMB43] Length = 306 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 90/319 (28%), Positives = 161/319 (50%), Gaps = 33/319 (10%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L NL R LS TL++Y + + ++ + + L+ ++R +++ Sbjct: 8 DYLSNLRHVRKLSDHTLRAYAHELDEL--------KKLANGRPLESLTAVDMRGAVARAH 59 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + RS+ LS ++F ++ + + + +R K + +LP+AL+ A L+D Sbjct: 60 AGGLSARSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKHAKTLPKALSVDDAAALMD 119 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-----------QSTL 188 T+ + R+ AIL L Y GLR++E + L + D ++ + Sbjct: 120 APTAGTAE-----NLRDHAILELFYSSGLRLAELIGLDIEYAKDGDYRSEGWLDLAEAEV 174 Query: 189 RIQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 ++GKGDK R VP+ RKAI L + + PLF +RG ++PGV + Sbjct: 175 TVRGKGDKERKVPV---GRKAIDALNAWLAVRGEFVKRDPRPLFLSVRGNRMSPGVVRER 231 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 +++ G+P + H LRHSFATH+L + GDLR++Q +LGH +S TQ+YT+++ ++ Sbjct: 232 VKRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQH- 290 Query: 307 GDWMMEIYDQTHPSITQKD 325 + +IYD HP ++D Sbjct: 291 ---LAKIYDSAHPRAKKRD 306 >gi|304315042|ref|YP_003850189.1| site-specific recombinase/integrase [Methanothermobacter marburgensis str. Marburg] gi|302588501|gb|ADL58876.1| predicted site-specific recombinase/integrase [Methanothermobacter marburgensis str. Marburg] Length = 311 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 105/309 (33%), Positives = 156/309 (50%), Gaps = 36/309 (11%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA----FYTEE 56 +E N PE++ +++L LEI R S T+++Y + F FL Y + Sbjct: 18 LERYNFPELI--------EDYLVELEI-RNYSPNTIKTYRSIVKNFYEFLMEEDDLYDDR 68 Query: 57 KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL-N 115 ++ R + Y +R + + + IK F ++ +E + L Sbjct: 69 RVLRSFKRYIQYL--------KRDKNVTQNYIYLVTVVIKKFFEF-------SEIDCLQE 113 Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHT--SHETKWIDARNSAILYLLYGCGLRISEA 173 ++ K++ SLP++LNE + + L++ V L S ++I R+ IL LLY GLR+SE Sbjct: 114 VKAPKRTKSLPKSLNEDEVMRLINAVELSDDGSPIKRFIKTRDRLILSLLYSSGLRVSEL 173 Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233 +SL +I T+RI+GKGDK RIV S R ++EY ++ LF Sbjct: 174 VSLKVNDIDMGDRTIRIRGKGDKDRIVLFDESTRDLLVEY-----LSRRIHESEYLFLNR 228 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 G PL P Q I+ R G+ T H LRHSFATHLL NG D+R+IQ +LGH LS Sbjct: 229 FGDPLTPRYVQMMIKNYARKAGINKKVTPHILRHSFATHLLKNGVDIRAIQQLLGHSNLS 288 Query: 294 TTQIYTNVN 302 TTQIYT+V+ Sbjct: 289 TTQIYTSVD 297 >gi|221201912|ref|ZP_03574949.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2M] gi|221207582|ref|ZP_03580590.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2] gi|221215807|ref|ZP_03588766.1| tyrosine recombinase XerC [Burkholderia multivorans CGD1] gi|221164343|gb|EED96830.1| tyrosine recombinase XerC [Burkholderia multivorans CGD1] gi|221172428|gb|EEE04867.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2] gi|221178332|gb|EEE10742.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2M] Length = 306 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 94/318 (29%), Positives = 162/318 (50%), Gaps = 33/318 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L NL+ R LS+ TL++Y + + A + + L +IR +++ Sbjct: 9 YLSNLKHVRQLSEHTLRAYTHELDELKKLAAG--------RPLDTLVAADIRGAVARAHA 60 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS+ LS ++F ++L +R + + +R K+ +LP+AL+ A L+D Sbjct: 61 GGLSARSISHRLSAWRAFYRWLAQRVEMPANPVAAVRAPKRPKTLPKALSVDDASALMDA 120 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT----------PQNIMD-DQSTLR 189 L T+ R+ AIL L Y GLR++E + L +D ++ + Sbjct: 121 PLADTTEGI-----RDHAILELFYSSGLRLAELIGLDVAYTQTGDYRSAGWLDLAEAEVT 175 Query: 190 IQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 ++GKG+K R VP+ RKAI L + + + PLF +RG ++PGV + + Sbjct: 176 VRGKGNKERKVPV---GRKAIDALNAWLAVRGEFVKHDPHPLFLSVRGNRMSPGVVRERV 232 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 ++ G+P H LRHSFATH+L + GDLR++Q +LGH +S TQ+YT+++ ++ Sbjct: 233 KRAALAAGIPAHVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYTSLDFQH-- 290 Query: 308 DWMMEIYDQTHPSITQKD 325 + +IYD HP ++D Sbjct: 291 --LAKIYDSAHPRAKKRD 306 >gi|317401433|gb|EFV82066.1| integrase/recombinase [Achromobacter xylosoxidans C54] Length = 324 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 98/320 (30%), Positives = 155/320 (48%), Gaps = 27/320 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL++LE R S TL Y R+ A K+ ++ +L IR F+++ Sbjct: 17 WLRHLESNRRYSPHTLDGYR---RELGFLHALAERAKLPLE---RLGNGHIRQFVARLHA 70 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q G RSL R+L+ + F ++ + + +R K SLP+AL+ +Q L+D Sbjct: 71 QGRGPRSLARTLAAWRGFYQWWAPAIGLAGNPVAGVRAPKAPRSLPKALSVEQTQALLDR 130 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNIMD---------DQSTLR 189 + E + R+ A+ LLY GLR+SE L L D D++ + Sbjct: 131 APAKVATEPAAL--RDQAMFELLYSSGLRLSELVGLDLRYARSADYESRGWLNLDEAEVI 188 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCP----FDLNLNIQLPLFRGIRGKPLNPGVFQR 245 + GKG K R VP+ + A+ + + P + + LF G RG+ ++P V Q Sbjct: 189 VLGKGGKRRSVPVGQAAVAALQRWIEARPQLAPPAASPSDAAALFLGARGRRISPRVVQL 248 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + + + GLP H LRHSFA+H+L + DLR++Q +LGH +STTQIYT ++ ++ Sbjct: 249 QLAHVAQAAGLPTHVHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQIYTRLDFQH 308 Query: 306 GGDWMMEIYDQTHPSITQKD 325 + YDQ HP +K Sbjct: 309 ----LARAYDQAHPRAGRKS 324 >gi|167917076|ref|ZP_02504167.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei BCC215] Length = 310 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 89/319 (27%), Positives = 162/319 (50%), Gaps = 33/319 (10%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L NL R LS TL++Y + + + + + L+ ++R+ +++ Sbjct: 12 DYLSNLRHVRKLSDHTLRAYAHELDEL--------KRLANGRPLDSLTAIDMRSAVARAH 63 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + RS+ LS ++F ++ + + + +R K++ +LP+AL+ L+D Sbjct: 64 AGGLSARSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKRAKTLPKALSVDDTAALMD 123 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-----------QSTL 188 T+ R+ AIL L Y GLR++E + L + + D ++ + Sbjct: 124 APTAGTAESL-----RDHAILELFYSSGLRLAELIGLDIEYVKDGAYRSAGWLDLAEAEV 178 Query: 189 RIQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 + GKGDK R VP+ RKA+ L + +L + PLF +RG ++PGV + Sbjct: 179 TVHGKGDKERKVPV---GRKALDALHAWLAVRGELVKHDPRPLFLSVRGNRMSPGVVRER 235 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 +++ G+P + H LRHSFATH+L + GDLR++Q +LGH +S TQ+YT+++ ++ Sbjct: 236 VKRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQH- 294 Query: 307 GDWMMEIYDQTHPSITQKD 325 + +IYD HP ++D Sbjct: 295 ---LAKIYDSAHPRAKKRD 310 >gi|213963184|ref|ZP_03391442.1| tyrosine recombinase XerD [Capnocytophaga sputigena Capno] gi|213954268|gb|EEB65592.1| tyrosine recombinase XerD [Capnocytophaga sputigena Capno] Length = 303 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 98/311 (31%), Positives = 159/311 (51%), Gaps = 32/311 (10%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFY----TEEKITIQTIRQLSYTEIRAFISKRRT 80 L ++RGLS+ T SY D + + +L Y T I T+RQ Y E+ Sbjct: 13 LRLQRGLSQNTAVSYGLDIEKLICYLEKYNITETPNNIEEDTLRQFVY-EV--------A 63 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + RS R +S +KSF K++ K + + + + K LP L+ ++ ++ + Sbjct: 64 KDLNARSQARLISALKSFFKFMMYEKGREDFPMSLIESPKIGVKLPDTLSLQEIDAMLAS 123 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + L T RN A++ +LY CGLR+SE +SL ++ D+ +R+ GKG K R+V Sbjct: 124 IDLSTDE-----GHRNKAMIEMLYACGLRVSELISLRLSDLFFDEDFIRVMGKGSKQRLV 178 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI--------RGKPLNPGVFQRYIRQLRR 252 P+ +K + +Y D N QL + +G RGK L + +RQ+ Sbjct: 179 PIEAYTQKQVKQYID------NQRRQLKIAKGHEDFVFLNRRGKQLTRAMIFTIVRQVAE 232 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 +GL + + HT RHSFATHLL NG +LR+IQ +LGH ++TT+IY +V + +++ Sbjct: 233 NIGLQKTISPHTFRHSFATHLLENGANLRAIQMMLGHENITTTEIYVHVEKSYLREALIK 292 Query: 313 IYDQTHPSITQ 323 + + S TQ Sbjct: 293 YHPRQKMSFTQ 303 >gi|325839425|ref|ZP_08166864.1| tyrosine recombinase XerD [Turicibacter sp. HGF1] gi|325490545|gb|EGC92861.1| tyrosine recombinase XerD [Turicibacter sp. HGF1] Length = 305 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 102/307 (33%), Positives = 166/307 (54%), Gaps = 17/307 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L +L I+RGLS T SYE D ++L++L + ++ + ++ ++ ++ Sbjct: 11 DFLAHLLIDRGLSLNTKISYERDLTEYLLYL-----QNQSVHQLDEIRREHVQQYLITLY 65 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + + +S+ R LS I+SF +YL KI+ N L +S L R L E ++ V+ Sbjct: 66 ERNLNTKSVARHLSAIRSFHQYLMIEKISNT----NPCELIESPKLKRHLPEILSIDEVE 121 Query: 140 NVLLHTSHETKWI-DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 ++L +S TK + D RN A++ L+Y GLR+SE L L ++ +R GKGDK R Sbjct: 122 HLL--SSFNTKTVNDIRNKAMVELMYASGLRVSELLQLKLDDVHLSMMFVRCVGKGDKER 179 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 IVP+ + + Y D +L LF G+ + F + +++ + G+ Sbjct: 180 IVPIGEVATELLQLYLDTARPNLLKKSNDWLFLNRFGEVMTRQGFWKILKKQAKEAGIEK 239 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + H LRHSFATHL+ NG DLR +Q +LGH +STTQIYT+++ ++ D +YD H Sbjct: 240 EISPHKLRHSFATHLIENGVDLRLVQEMLGHSDISTTQIYTHISKEHLKD----VYDLYH 295 Query: 319 PSITQKD 325 P +QKD Sbjct: 296 PR-SQKD 301 >gi|83590344|ref|YP_430353.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC 39073] gi|83573258|gb|ABC19810.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC 39073] Length = 295 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 97/300 (32%), Positives = 153/300 (51%), Gaps = 15/300 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L +ERGL++ TL SY D +QFL++L E +++ R ++ + A++ K + Sbjct: 8 FLYYLVVERGLAENTLASYNSDLQQFLLYL-----EGAGVKSPRDVTRGLLVAYLVKMQQ 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 ++ + L+ +KSF +L + ++ ++ + ++S LP+ L + L++ Sbjct: 63 DGRSPATISQHLAALKSFYHFLLRERLVESDPTADLESPRQSKKLPQVLTVAEVEKLLNQ 122 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 T R+ A+L LLY GLR+SE +SL + + +R GKG K R+V Sbjct: 123 PRTDTP-----AGLRDKAMLELLYATGLRVSELVSLNVDQVNLEGEFVRCLGKGSKERVV 177 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ + Y + L P LF G+ L+ + ++ R L Sbjct: 178 PMGQVACFYVRTYIENGRGKLIKRATEPALFVNHHGRRLSRQGCWKILKGYVRAANLKKD 237 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T HTLRHSFATHLL NG DLRS+Q +LGH + TTQIYT++ K + EIYD THP Sbjct: 238 ITPHTLRHSFATHLLENGADLRSVQELLGHADIGTTQIYTHLTRKK----IREIYDHTHP 293 >gi|39995600|ref|NP_951551.1| PfpI family intracellular peptidase [Geobacter sulfurreducens PCA] gi|39982363|gb|AAR33824.1| site-specific recombinase, phage integrase family [Geobacter sulfurreducens PCA] gi|298504620|gb|ADI83343.1| site-specific recombinase, XerC [Geobacter sulfurreducens KN400] Length = 294 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 99/303 (32%), Positives = 151/303 (49%), Gaps = 16/303 (5%) Query: 17 ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 E +++ LE ER +S T +YE D QF F+ E +S+ +R +++ Sbjct: 4 EVTTFIRYLENERAVSPHTRAAYESDLAQFRDFV---RGELGAGAGAAAISHLLVRRWLA 60 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + Q S+ R L+ +++F YL + + + K+ +P LN + Sbjct: 61 QLH-QSHARSSIGRKLAAVRAFFTYLVRTGALPRNPAELVSTPKREKKVPFHLNIDEVTA 119 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 LV+ + E + R+ AIL LY CG+R+SE L I T+R+ GKG K Sbjct: 120 LVE-----SPREPGVLSLRDRAILETLYSCGVRVSELTGLNVGGIDLADGTVRVLGKGGK 174 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 R+VP+ R A+ Y L + + +++PLF RG L +R + + + Sbjct: 175 ERVVPIGSHARLALSSY--LAARN-HPPLEVPLFTNARGGRLTARSVRRVVDKHILKVAA 231 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + HTLRH+FATHLL G DLR+IQ +LGH LSTTQ YT+V G D +ME+YD+ Sbjct: 232 MRKISPHTLRHTFATHLLEGGADLRAIQELLGHASLSTTQKYTHV----GIDRLMEVYDK 287 Query: 317 THP 319 HP Sbjct: 288 AHP 290 >gi|167032086|ref|YP_001667317.1| site-specific tyrosine recombinase XerD [Pseudomonas putida GB-1] gi|166858574|gb|ABY96981.1| tyrosine recombinase XerD [Pseudomonas putida GB-1] Length = 298 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 100/309 (32%), Positives = 152/309 (49%), Gaps = 32/309 (10%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKR 78 +L L +E+GLS T SY D +F + E+ +++ R+L I ++ R Sbjct: 11 QFLDALWLEKGLSDNTRVSYRSD---LALFNGWLQEQAVSLPDAGREL----ILDHLAWR 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q RS R LSG++ F +YL + ++ L + + LP++L+E Sbjct: 64 LDQGYKPRSTARFLSGLRGFFRYLLRERLVAIDPTLQVDMPQLGKPLPKSLSEADV---- 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL + I R+ A+L +LY CGLR++E +SLT + Q LR+ GKG K R Sbjct: 120 -EALLQAPDLGEAIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKER 178 Query: 199 IVPLLPSV--------RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 +VP+ R E + P D+ LF +RG+ + F I+ Sbjct: 179 LVPMGEEAVVWLERYQRDGRAELLNGRPSDV-------LFPSLRGEQMTRQTFWHRIKHH 231 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 R G+ + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + Sbjct: 232 ARVAGIDKPLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKAR----L 287 Query: 311 MEIYDQTHP 319 +++ Q HP Sbjct: 288 QQLHAQHHP 296 >gi|283782965|ref|YP_003373719.1| tyrosine recombinase XerD [Gardnerella vaginalis 409-05] gi|283441042|gb|ADB13508.1| tyrosine recombinase XerD [Gardnerella vaginalis 409-05] Length = 319 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 97/320 (30%), Positives = 168/320 (52%), Gaps = 19/320 (5%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI-TIQT 62 NN+PE + + Q ++ +++IERGLSK T+ +Y D + + +L Y E KI I T Sbjct: 12 NNIPEEFALHI----QRFIAHIDIERGLSKKTVSAYASDLQDYTCWL--YNERKIKDITT 65 Query: 63 IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122 I QL +I ++I +G R++ R L+ I + +++ ++ K++ Sbjct: 66 ISQL---DIESYIRTLNELGLGTRTVARRLASIHEWHRFMLAHGDIQADVSAQVKAPKQA 122 Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 + LP L+ ++ +++ S + I R++A+L LY G RISEA+ + ++I Sbjct: 123 DYLPDVLSIEEVNRVIEAAGNFGSSDA--ISIRDTALLEFLYATGARISEAVGVKFEDID 180 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL---FRGIRGKPLN 239 ++S +++ GKG K R+VP+ +A+ Y + +L L + L F RG L+ Sbjct: 181 LNESVVKLTGKGSKQRLVPIGGCAVRALRNYMEKSRPELALKGKRELHTIFLNKRGSALS 240 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 + Q L HTLRHS ATHL++ G D+R++Q +LGH ++TTQIYT Sbjct: 241 RQSAWEIVTQAGERAKLDKPLHPHTLRHSLATHLIAGGADVRTVQELLGHASVTTTQIYT 300 Query: 300 NVNSKNGGDWMMEIYDQTHP 319 +++ D ++E Y +HP Sbjct: 301 HISP----DALVEAYVMSHP 316 >gi|115353184|ref|YP_775023.1| site-specific tyrosine recombinase XerC [Burkholderia ambifaria AMMD] gi|115283172|gb|ABI88689.1| tyrosine recombinase XerC [Burkholderia ambifaria AMMD] Length = 306 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 92/318 (28%), Positives = 162/318 (50%), Gaps = 33/318 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L NL+ R LS+ TL++Y + + A + + L+ ++R +++ Sbjct: 9 YLSNLKHVRQLSEHTLRAYSHELDELKKLAAG--------RPLDTLTAVDMRGAVARAHA 60 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS+ LS ++F ++L + + + +R K+ +LP+AL+ A L+D Sbjct: 61 GGLSARSISHRLSAWRAFYRWLAQHIEMPANPVAAVRAPKRPKTLPKALSVDDASALMDA 120 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-----------QSTLR 189 L T+ R+ AIL L Y GLR++E + L + D ++ + Sbjct: 121 PLAGTTEGI-----RDHAILELFYSSGLRLAELVGLDVRYTQADGYRSAGWLDLAEAEVT 175 Query: 190 IQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 ++GKG+K R VP+ RKAI L + + + PLF +RG + PGV + + Sbjct: 176 VRGKGNKERKVPV---GRKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMAPGVVRERV 232 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 ++ G+P + H LRHSFATH+L + GDLR++Q +LGH +S TQ+YT+++ ++ Sbjct: 233 KRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQH-- 290 Query: 308 DWMMEIYDQTHPSITQKD 325 + +IYD HP ++D Sbjct: 291 --LAKIYDSAHPRAKKRD 306 >gi|298253373|ref|ZP_06977165.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1] gi|297532768|gb|EFH71654.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1] Length = 319 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 97/320 (30%), Positives = 168/320 (52%), Gaps = 19/320 (5%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI-TIQT 62 NN+PE + + Q ++ +++IERGLSK T+ +Y D + + +L Y E KI I T Sbjct: 12 NNIPEEFALHI----QRFIAHIDIERGLSKKTVSAYASDLQDYTCWL--YDERKIKDIAT 65 Query: 63 IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122 I QL +I ++I +G R++ R L+ I + +++ ++ K++ Sbjct: 66 ISQL---DIESYIRTLNELGLGTRTVARRLASIHEWHRFMLAHGDIQADVSAQVKAPKQA 122 Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 + LP L+ ++ +++ S + I R++A+L LY G RISEA+ + ++I Sbjct: 123 DYLPDVLSIEEVNRVIEAAGNFGSSDA--ISIRDTALLEFLYATGARISEAVGVKFEDID 180 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL---FRGIRGKPLN 239 ++S +++ GKG K R+VP+ +A+ Y + +L L + L F RG L+ Sbjct: 181 LNESVVKLTGKGSKQRLVPIGGCAVRALRNYMEKSRPELALKGKRELHTIFLNKRGNALS 240 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 + Q L HTLRHS ATHL++ G D+R++Q +LGH ++TTQIYT Sbjct: 241 RQSAWAIVTQAGERAKLDKPLHPHTLRHSLATHLIAGGADVRTVQELLGHASVTTTQIYT 300 Query: 300 NVNSKNGGDWMMEIYDQTHP 319 +++ D ++E Y +HP Sbjct: 301 HISP----DALVEAYVMSHP 316 >gi|317129216|ref|YP_004095498.1| tyrosine recombinase XerC [Bacillus cellulosilyticus DSM 2522] gi|315474164|gb|ADU30767.1| tyrosine recombinase XerC [Bacillus cellulosilyticus DSM 2522] Length = 297 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 95/309 (30%), Positives = 159/309 (51%), Gaps = 19/309 (6%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 EL+K+ ++ L++E+ S T +Y+ D F F + + I T +SY +IR Sbjct: 4 ELIKQ---FITYLQLEKQASNHTTLNYKNDILDFYAF-----TKSLKISTFVDVSYNDIR 55 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 +++ + S+ R +S ++SF +L + +I E+ ++ K LP E+ Sbjct: 56 DYLTVLHQKAYSRNSIARKISALRSFYSFLMREEIVKENPFQSVTTPKGGKRLPTFFFEE 115 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + L D ++ +K + RN+AIL LLY G+R+SE +SL + +D TL ++G Sbjct: 116 ELAKLFD-----STDTSKPLGKRNNAILELLYATGIRVSECVSLNLMDYDNDIGTLFVRG 170 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 KG K R VP+ +A+ +Y + L N + LF RG L+ + + + Sbjct: 171 KGKKERYVPVGSFAMEALNDYLNNGRPHLRSNQTNKDALFVNYRGGRLSDRSIRTILNNI 230 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 R + H LRH+FATH+L+ G DLR++Q +LGH RLS+TQ+YT+V D + Sbjct: 231 VRDASTASRISPHVLRHTFATHMLNEGADLRTVQELLGHSRLSSTQVYTHVTK----DRL 286 Query: 311 MEIYDQTHP 319 ++Y HP Sbjct: 287 RDVYRSAHP 295 >gi|332521253|ref|ZP_08397709.1| integrase family protein [Lacinutrix algicola 5H-3-7-4] gi|332042981|gb|EGI79179.1| integrase family protein [Lacinutrix algicola 5H-3-7-4] Length = 296 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 92/299 (30%), Positives = 155/299 (51%), Gaps = 12/299 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 ++ LE+ER S+LT+++Y D F +L E TI+ +Y++IR++I + Sbjct: 6 FVDYLELERNYSQLTIKAYSKDIEAFQKYLKKNHE----TTTIKTANYSQIRSWIVQLVE 61 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 KI +R++ R +S + ++ K+L K + + + + LK S + ++ + +D+ Sbjct: 62 SKISNRTINRKISALNTYYKFLLKIEQLKTNPLAKHKALKTSKKIQVPFSQTEVAMAIDD 121 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + HE + RN I+ L Y G+R E ++L ++I TL++ GK +K R V Sbjct: 122 L----QHENNFKGLRNKLIIELFYSTGIRRIELVNLKIKDINQANKTLKVLGKRNKERYV 177 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 PLL SV K I +Y + N+ Q LF RG + + R I + + Sbjct: 178 PLLDSVNKTINQYIEKRQELKNIKDQEYLFLTKRGVKIYETLVYRIINEYFSLASNKVKK 237 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H LRHSFATHLL+ G DL +++ +LGH L+ TQ+YT+ N + E+Y + HP Sbjct: 238 SPHILRHSFATHLLNQGADLNAVKELLGHSSLAATQVYTH----NSIAQLKEVYLKAHP 292 >gi|332881238|ref|ZP_08448888.1| tyrosine recombinase XerD [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680614|gb|EGJ53561.1| tyrosine recombinase XerD [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 317 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 96/288 (33%), Positives = 154/288 (53%), Gaps = 17/288 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + Q L++ERGLS TL +Y D R+ L FL E + +T+ S ++ F+++ Sbjct: 21 RRYYQYLKLERGLSGNTLDAYTEDLRKLLGFL---WEGGLDFRTV---SVDDLHQFMAEL 74 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 IG RS+ R LSGI+SF ++L K + + + K LP L + ++ Sbjct: 75 ADVGIGPRSMARILSGIRSFYRFLYVEKEIVQDPTELLESPKIGRHLPEVLTVAEIDAMI 134 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + L RN AIL +LY CGLR+SE L ++ ++ +R++GKG K R Sbjct: 135 AGIDLSQPE-----GQRNRAILEMLYSCGLRVSELCGLRISDLFLEEGFIRVKGKGGKER 189 Query: 199 IVPLLP-SVRKAILEYYDLCPFDLNL---NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 +VP+ +VR+ LE + LC +++ N RG L+ ++++L Sbjct: 190 LVPISGRAVRE--LENWFLCRNLIHIKPGNEDFVFLSLRRGASLSRITIFYWVKELAVAA 247 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 G+ + HT RHSFATHLL G +LR+IQ++LGH +STT+IYT+++ Sbjct: 248 GIQKKISPHTFRHSFATHLLEGGANLRAIQAMLGHESISTTEIYTHID 295 >gi|311742411|ref|ZP_07716220.1| tyrosine recombinase XerD [Aeromicrobium marinum DSM 15272] gi|311314039|gb|EFQ83947.1| tyrosine recombinase XerD [Aeromicrobium marinum DSM 15272] Length = 310 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 97/306 (31%), Positives = 156/306 (50%), Gaps = 19/306 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L +L +ERGL+ TL SY D R++L +LA E+ +++ ++ F++ R Sbjct: 14 DYLSHLGVERGLADNTLLSYRRDLRRYLGYLAEIGREQPD-----EITEADLLGFVALLR 68 Query: 80 TQK-----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 T +G S+ R + ++ ++ + ++ ++ + + LP+AL A Sbjct: 69 TGDDLTGPLGAASVARHVVTVRGLHRFWLREQLVATDVAGAVKPPRPAQRLPKAL----A 124 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 L V+ +L + R+ A+L LLYG G RISEA+ + ++ D+STL ++GKG Sbjct: 125 LEQVEAILDAAGAPGTRLAQRDRALLELLYGTGARISEAVGIDVDDLDLDESTLLLRGKG 184 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRY 253 K RIVP+ AI +Y L+ P LF RG L+ + + R Sbjct: 185 GKHRIVPVGSFAATAIGDYLVGARVALSSTAASPALFLNSRGGRLSRQSAWTVLTRAARR 244 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ + HTLRHSFATHLL G D+R +Q +LGH ++TTQIYT V + + E+ Sbjct: 245 AGVETDVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVER----LREV 300 Query: 314 YDQTHP 319 Y HP Sbjct: 301 YATAHP 306 >gi|53717850|ref|YP_106836.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei K96243] gi|76808989|ref|YP_331806.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei 1710b] gi|126451479|ref|YP_001064490.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei 1106a] gi|134283593|ref|ZP_01770292.1| tyrosine recombinase XerC [Burkholderia pseudomallei 305] gi|167736614|ref|ZP_02409388.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei 14] gi|167813712|ref|ZP_02445392.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei 91] gi|167822227|ref|ZP_02453698.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei 9] gi|167843822|ref|ZP_02469330.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei B7210] gi|167909037|ref|ZP_02496128.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei 112] gi|226199796|ref|ZP_03795347.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pakistan 9] gi|242316661|ref|ZP_04815677.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1106b] gi|254182208|ref|ZP_04888805.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1655] gi|254188137|ref|ZP_04894649.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pasteur 52237] gi|254196193|ref|ZP_04902617.1| tyrosine recombinase XerC [Burkholderia pseudomallei S13] gi|254261174|ref|ZP_04952228.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1710a] gi|254295751|ref|ZP_04963208.1| tyrosine recombinase XerC [Burkholderia pseudomallei 406e] gi|52208264|emb|CAH34195.1| integrase/recombinase [Burkholderia pseudomallei K96243] gi|76578442|gb|ABA47917.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1710b] gi|126225121|gb|ABN88661.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1106a] gi|134245002|gb|EBA45097.1| tyrosine recombinase XerC [Burkholderia pseudomallei 305] gi|157806287|gb|EDO83457.1| tyrosine recombinase XerC [Burkholderia pseudomallei 406e] gi|157935817|gb|EDO91487.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pasteur 52237] gi|169652936|gb|EDS85629.1| tyrosine recombinase XerC [Burkholderia pseudomallei S13] gi|184212746|gb|EDU09789.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1655] gi|225928147|gb|EEH24183.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pakistan 9] gi|242139900|gb|EES26302.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1106b] gi|254219863|gb|EET09247.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1710a] Length = 310 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 88/319 (27%), Positives = 163/319 (51%), Gaps = 33/319 (10%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L NL R LS TL++Y + + ++ + + L+ ++R+ +++ Sbjct: 12 DYLSNLRHVRKLSDHTLRAYAHELDEL--------KKLANGRPLDSLTAVDMRSAVARAH 63 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + RS+ LS ++F ++ + + + +R K++ +LP+AL+ L+D Sbjct: 64 AGGLSARSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKRAKTLPKALSVDDTAALMD 123 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-----------QSTL 188 T+ R+ AIL L Y GLR++E + L + + D ++ + Sbjct: 124 APTAGTAESL-----RDHAILELFYSSGLRLAELIGLDIEYVKDGAYRSAGWLDLAEAEV 178 Query: 189 RIQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 ++GKGDK R VP+ RKA+ L + + + PLF +RG ++PGV + Sbjct: 179 TVRGKGDKERKVPV---GRKALDALHAWLAVRGEFVKHDPRPLFLSVRGNRMSPGVVRER 235 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 +++ G+P + H LRHSFATH+L + GDLR++Q +LGH +S TQ+YT+++ ++ Sbjct: 236 VKRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQH- 294 Query: 307 GDWMMEIYDQTHPSITQKD 325 + +IYD HP ++D Sbjct: 295 ---LAKIYDSAHPRAKKRD 310 >gi|302335890|ref|YP_003801097.1| tyrosine recombinase XerD [Olsenella uli DSM 7084] gi|301319730|gb|ADK68217.1| tyrosine recombinase XerD [Olsenella uli DSM 7084] Length = 321 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 101/310 (32%), Positives = 157/310 (50%), Gaps = 29/310 (9%) Query: 12 FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71 +L + + +L L IERG S TL++Y D +++ L + +S +I Sbjct: 1 MDLTRAKDEYLNYLAIERGSSPNTLEAYGRDLGRYVAHLRGRGADDPD-----AVSRHDI 55 Query: 72 RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131 A++ + S++RS++ IK F +++ +IT ++ +K+ LP L+ Sbjct: 56 EAYLETLAEGGLSPSSVQRSVAAIKGFHRFMVSEQITENHPTADLPLPRKALHLPDTLSH 115 Query: 132 KQALTLVDNVLLHTSHETKWIDA-------------RNSAILYLLYGCGLRISEALSLTP 178 +Q L+D A R+ AIL +LYGCGLR+SE SL Sbjct: 116 EQVFRLLDEPFQDACRPAPRALADGGTDDSGAARFYRDKAILEVLYGCGLRVSELCSLEL 175 Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLP-LFRGIRGK 236 ++++ D LRI GKG K R+VP+L + +A+ Y D P L P +F G RG Sbjct: 176 RDVLLDDEVLRILGKGSKERVVPILGTAARALGSYLEDWRPLLLKPPRICPAVFLGSRGT 235 Query: 237 PLNP----GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 ++ G+ +RY R L GL H+LRHS+ATHLL G DLR++Q +LGH + Sbjct: 236 KISRQAVFGIVERYGR-LTGIEGL----HPHSLRHSYATHLLEGGMDLRAVQELLGHASI 290 Query: 293 STTQIYTNVN 302 STTQ+YT+V+ Sbjct: 291 STTQLYTHVD 300 >gi|300871744|ref|YP_003786617.1| tyrosine recombinase XerD [Brachyspira pilosicoli 95/1000] gi|300689445|gb|ADK32116.1| tyrosine recombinase, XerD [Brachyspira pilosicoli 95/1000] Length = 307 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 97/315 (30%), Positives = 165/315 (52%), Gaps = 35/315 (11%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 LL+E ++LQ L + T+ SY D ++++ FL E I YT IR Sbjct: 16 LLEEFADYLQTL----NYAAHTINSYTKDLKEYIKFL-----EDNNIDFNDATHYT-IRD 65 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 + + + +K+ + + R LS IK F KYL + + ++ I+NM++ K+ + + L Sbjct: 66 YFASLKNKKLKNATTSRHLSSIKKFYKYLIRNGYSDKTRIINMKSPKREEHIAKFL---- 121 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 +L +D +L E + R+ + +Y GLR SE +S+ + +TLRI GK Sbjct: 122 SLNDIDKIL-EIDDENDFTIIRDKMMAIFMYAIGLRASELISIKLNMMHKGSTTLRILGK 180 Query: 194 GDKIRIVPLLPSV---------RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 G K+R +PL+P + ++AI++ + N N LF GKP++ + Sbjct: 181 GSKVREIPLIPIIYDNWDLYMQKRAIIQ----REYGSNNNY---LFVNRFGKPISDRSVR 233 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 +++L R + + + HTLRH+FATHLL+N ++R +Q +LGH +STTQ YT+V + Sbjct: 234 NSMKRLMRMANISVDFSPHTLRHTFATHLLNNDAEIRGVQELLGHESISTTQRYTHVTN- 292 Query: 305 NGGDWMMEIYDQTHP 319 D + E+Y++ HP Sbjct: 293 ---DRLFEVYNRAHP 304 >gi|126665073|ref|ZP_01736056.1| site-specific tyrosine recombinase XerD [Marinobacter sp. ELB17] gi|126630443|gb|EBA01058.1| site-specific tyrosine recombinase XerD [Marinobacter sp. ELB17] Length = 314 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 99/294 (33%), Positives = 146/294 (49%), Gaps = 14/294 (4%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 +E GLS+ T ++Y D +L + I T R +++ ++S + Sbjct: 32 LEDGLSEKTREAYRSDLGGLAQWLQGQPGTPLLIATQR----SDLLTWLSGGLAGGVKAS 87 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 + R LSGI+ F +YL + + E L + + K + LP L E + N LL Sbjct: 88 TAARRLSGIRRFYRYLLREGLIPEDPTLRIESPKLTRPLPDTLTEAEV-----NALLTEP 142 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 I+ R+ A+L +LYGCGLR++E SL + Q +RI GKGDK R+VPL Sbjct: 143 DPEVPIELRDKAMLEILYGCGLRVTELTSLRLDQVNLRQGVVRITGKGDKDRLVPLGEEA 202 Query: 207 RKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + Y + P L + LF G R K + F I+ G+ + HTL Sbjct: 203 IDWLQRYIKEARPELLKGHACDDLFPGNRPKAMTRQTFWHRIKHYAARTGIQKHLSPHTL 262 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 RH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + + E++ Q HP Sbjct: 263 RHAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVARQR----LQELHRQHHP 312 >gi|171320566|ref|ZP_02909590.1| tyrosine recombinase XerC [Burkholderia ambifaria MEX-5] gi|171094193|gb|EDT39276.1| tyrosine recombinase XerC [Burkholderia ambifaria MEX-5] Length = 306 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 92/318 (28%), Positives = 162/318 (50%), Gaps = 33/318 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L NL+ R LS+ TL++Y + + A + + L+ ++R +++ Sbjct: 9 YLSNLKHVRQLSEHTLRAYTHELDELKKLAAG--------RPLDALTAVDMRGAVARAHA 60 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS+ LS ++F ++L +R + + +R K+ +LP+AL+ A L+D Sbjct: 61 GGLSARSIAHRLSAWRAFYRWLAQRIEMPANPVAAVRAPKRPKTLPKALSVDDASALMDA 120 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-----------QSTLR 189 L T+ R+ AIL L Y GLR++E + L D ++ + Sbjct: 121 PLAGTTEGI-----RDHAILELFYSSGLRLAELVGLDVMYTQADGYRSAGWLDLAEAEVT 175 Query: 190 IQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 ++GKG+K R VP+ RKAI L + + + PLF +RG + PGV + + Sbjct: 176 VRGKGNKERKVPV---GRKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMAPGVVRDRV 232 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 ++ G+P + H LRHSFATH+L + GDLR++Q +LGH ++ TQ+YT+++ ++ Sbjct: 233 KRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQVYTSLDFQH-- 290 Query: 308 DWMMEIYDQTHPSITQKD 325 + +IYD HP ++D Sbjct: 291 --LAKIYDSAHPRAKKRD 306 >gi|186474845|ref|YP_001856315.1| site-specific tyrosine recombinase XerC [Burkholderia phymatum STM815] gi|184191304|gb|ACC69269.1| tyrosine recombinase XerC [Burkholderia phymatum STM815] Length = 307 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 92/323 (28%), Positives = 162/323 (50%), Gaps = 41/323 (12%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +L +LE ER LS TL++Y + + + + L+ T+IR +++ Sbjct: 9 TYLSSLEHERRLSAHTLRAYTHELGELKTL--------ANGRPLESLTATDIRGAVARAH 60 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + RS+ LS ++F ++L R + + +R K++ +LP+AL+ VD Sbjct: 61 AGGLSARSIGHRLSAWRAFYRWLAGRVDLPANPVATVRAPKRAKTLPKALS-------VD 113 Query: 140 NV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-----------IMDDQS 186 + L+ T R+ A+L L Y GLR+SE + L Q + D + Sbjct: 114 DTHKLMETPATATAEGLRDHAMLELFYSSGLRLSELVGLDAQYADADGYRSQGWLKLDDA 173 Query: 187 TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242 + + GKG++ R+VP+ L ++R + +L D + PLF +RG ++P V Sbjct: 174 EVEVLGKGNRRRVVPVGSKALEALRAWLAVRGELVKHDPH-----PLFVSVRGNRMSPNV 228 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + +++ G+P + H LRHSFATH+L + GDLR++Q +LGH ++ TQ+YT ++ Sbjct: 229 VRDRVKRAALTAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASIAATQVYTGLD 288 Query: 303 SKNGGDWMMEIYDQTHPSITQKD 325 ++ + IYDQ HP ++D Sbjct: 289 FQH----LARIYDQAHPRAKKRD 307 >gi|254251134|ref|ZP_04944452.1| Site-specific recombinase XerC [Burkholderia dolosa AUO158] gi|124893743|gb|EAY67623.1| Site-specific recombinase XerC [Burkholderia dolosa AUO158] Length = 306 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 93/318 (29%), Positives = 160/318 (50%), Gaps = 33/318 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L NL+ R LS+ TL++Y + + A E +T ++R +++ Sbjct: 9 YLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLETLTA--------VDMRGAVARAHA 60 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS+ LS ++F ++L + + + +R K+ +LP+AL+ A L+D Sbjct: 61 GGLSARSIAHRLSAWRAFYRWLAQHVEMPANPVAAVRAPKRPKTLPKALSVDDASALMDA 120 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-----------QSTLR 189 L T+ R+ AIL L Y GLR++E + L D ++ + Sbjct: 121 PLADTTEGI-----RDRAILELFYSSGLRLAELIGLDVAYAQADGYRSAGWLDLAEAEVT 175 Query: 190 IQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 ++GKG+K R VP+ RKAI L + + + PLF +RG + PGV + + Sbjct: 176 VRGKGNKERKVPV---GRKAIDALNAWLAVRGEFVRHDPHPLFLSVRGNRMAPGVVRERV 232 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 ++ G+P + H LRHSFATH+L + GDLR++Q +LGH ++ TQIYT+++ ++ Sbjct: 233 KRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQH-- 290 Query: 308 DWMMEIYDQTHPSITQKD 325 + +IYD HP ++D Sbjct: 291 --LAKIYDSAHPRAKKRD 306 >gi|172062036|ref|YP_001809688.1| site-specific tyrosine recombinase XerC [Burkholderia ambifaria MC40-6] gi|171994553|gb|ACB65472.1| tyrosine recombinase XerC [Burkholderia ambifaria MC40-6] Length = 306 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 92/318 (28%), Positives = 162/318 (50%), Gaps = 33/318 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L NL+ R LS+ TL++Y + + A + + L+ ++R +++ Sbjct: 9 YLSNLKHVRQLSEHTLRAYTHELDELKKLAAG--------RPLDTLTAVDMRGAVARAHA 60 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS+ LS ++F ++L + + + +R K+ +LP+AL+ A L+D Sbjct: 61 GGLSARSISHRLSAWRAFYRWLAQHIEMPANPVAAVRAPKRPKTLPKALSVDDASALMDA 120 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-----------QSTLR 189 L T+ R+ AIL L Y GLR++E + L + D ++ + Sbjct: 121 PLAGTTEGI-----RDHAILELFYSSGLRLAELVGLDVRYTQADGYRSAGWLDLAEAEVT 175 Query: 190 IQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 ++GKG+K R VP+ RKAI L + + + PLF +RG + PGV + + Sbjct: 176 VRGKGNKERKVPV---GRKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMAPGVVRERV 232 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 ++ G+P + H LRHSFATH+L + GDLR++Q +LGH +S TQ+YT+++ ++ Sbjct: 233 KRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQH-- 290 Query: 308 DWMMEIYDQTHPSITQKD 325 + +IYD HP ++D Sbjct: 291 --LAKIYDSAHPRAKKRD 306 >gi|258515282|ref|YP_003191504.1| tyrosine recombinase XerD [Desulfotomaculum acetoxidans DSM 771] gi|257778987|gb|ACV62881.1| tyrosine recombinase XerD [Desulfotomaculum acetoxidans DSM 771] Length = 296 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 97/302 (32%), Positives = 150/302 (49%), Gaps = 16/302 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 N++ L +ERGL++ TL +Y D + FL F + I++ I ++ + Sbjct: 7 NFIYYLAVERGLAENTLSAYRMDLQNFLSFC-----QDKQIKSWSDAGKNTILMYMMFLK 61 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q + ++ R L+ +KSF ++L ++ S +M + K S LP L+ + Sbjct: 62 QQAMSPATISRRLAALKSFFRFLTSEQVVEFSPTESMESPKLSQKLPNVLSTSEV----- 116 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 +LL ++ R+ A+L LLY G+R+SE + L +++ + +R GKG K RI Sbjct: 117 ELLLMQPKISQPAGIRDKAMLELLYATGIRVSELVDLNLEDVSIAEQFIRCYGKGSKERI 176 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 VPL + EY L Q LF G+ L F + I++ R + Sbjct: 177 VPLGSLSASFVEEYLQKGRVKLIKKAQTTNALFLNHHGQRLTRQGFWKIIKKYGRQGKID 236 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T HTLRHSFATHLL NG DLRS+Q +LGH +STTQIYT++ + E+Y + Sbjct: 237 KPITPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHLTKTR----LKEVYKNS 292 Query: 318 HP 319 HP Sbjct: 293 HP 294 >gi|149372788|ref|ZP_01891809.1| site-specific recombinase [unidentified eubacterium SCB49] gi|149354485|gb|EDM43050.1| site-specific recombinase [unidentified eubacterium SCB49] Length = 299 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 100/303 (33%), Positives = 155/303 (51%), Gaps = 28/303 (9%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L IERGLS T+ +Y D + +L E ++ I I +S I+ FI + + + Sbjct: 14 LRIERGLSDNTIANYALDILKLTKWLE---ENEMAISPI-DISEKTIQEFIYEI-AKTVA 68 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S R +SG+K F YL + T + + M + K LP L+EK+ L+ + L Sbjct: 69 PSSQSRVISGLKGFFNYLVFEEYRTTNPLELMESPKIGRKLPDTLSEKEIDLLISEIDLS 128 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + RN AIL LYGCGLR+SE ++L ++ ++ +++ GKGDK R VP+ Sbjct: 129 SPQ-----GERNRAILETLYGCGLRVSEIINLKISDLFFEEGFIKVTGKGDKERFVPIGD 183 Query: 205 SVRKAILEYYDLCPFDLNLNIQLP--------LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 + K I Y + + + P LF RGK L + I++L G+ Sbjct: 184 NTIKFINIYRN------EIRVHEPIKPEASDTLFLNRRGKGLTRAMIFTIIKRLLEKTGI 237 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + + HT RHSFATHLL G DLR+IQ +LGH ++TT+IYT+++ + + E+ + Sbjct: 238 QKNVSPHTFRHSFATHLLERGADLRAIQQMLGHESITTTEIYTHIDKSH----LTEVIHK 293 Query: 317 THP 319 HP Sbjct: 294 FHP 296 >gi|323489648|ref|ZP_08094875.1| tyrosine recombinase xerD [Planococcus donghaensis MPA1U2] gi|323396779|gb|EGA89598.1| tyrosine recombinase xerD [Planococcus donghaensis MPA1U2] Length = 300 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 92/302 (30%), Positives = 158/302 (52%), Gaps = 15/302 (4%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +++ L +ER L+ TL SYE D + +L +L +E +++++++ I + + Sbjct: 10 DYIHFLRVERQLADNTLSSYERDLKVYLQYL----KEVEQLESLKKVERVHILNHLRHLK 65 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 R++ R +S I+SF +++ + +I +++ + LP L+ ++ Sbjct: 66 ETTKTPRTVARHISSIRSFHQFMIRERIVETDPTVHLEMPQMDKKLPNILSIEEV----- 120 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + L+ K R+ A+L LLY G+R+SE ++L +++ +R GKG K RI Sbjct: 121 DALIQVPATNKANGLRDQAMLELLYASGMRVSECINLDIEDVHLTMGFVRCTGKGGKERI 180 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +PL S + Y + DL + + LF RGK L F + ++Q + G+ Sbjct: 181 IPLGKSALTSCQTYLEQGRIDLVKSGEKTDALFINQRGKRLTRQGFWKLLKQHAQKAGIQ 240 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T HTLRHSFATHLL NG D+R++Q +LGH +STTQIYT+V+ + ++Y Q Sbjct: 241 KELTPHTLRHSFATHLLENGADIRAVQEMLGHADISTTQIYTHVSKTR----LKDVYSQF 296 Query: 318 HP 319 HP Sbjct: 297 HP 298 >gi|227549328|ref|ZP_03979377.1| site-specific tyrosine recombinase XerD [Corynebacterium lipophiloflavum DSM 44291] gi|227078647|gb|EEI16610.1| site-specific tyrosine recombinase XerD [Corynebacterium lipophiloflavum DSM 44291] Length = 301 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 92/313 (29%), Positives = 143/313 (45%), Gaps = 19/313 (6%) Query: 12 FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71 LL+ WL +L +ERG++ TL +Y D +++ +L E I + +S + Sbjct: 1 MNLLQVATMWLDHLAVERGVAANTLSNYRRDVERYIAWL-----EAAGISRLDDVSTNHV 55 Query: 72 RAFISK-----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126 A+++ R + + S R+L + K+ +T + LP Sbjct: 56 EAYVADLRRGVGRAKPLSASSAGRALVVARGLHKFAVAEGLTQADVASAVAPPSAGEKLP 115 Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 L+ + L+D T D R+ A+L +LY G R+SE L L ++ D Sbjct: 116 DTLSIDEVARLLDACPTRTP-----CDLRDKALLEVLYATGARVSEVLGLVVDDVASDAD 170 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 L + GKG K R+VPL R+A+ Y L LF RG L+ Sbjct: 171 VLTVTGKGSKQRLVPLGSHAREAVDAYLVRGRPVLAKGSTYALFLNRRGTALSRQSAWGI 230 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 I+ GL + HTLRHSFATHLL G D+R++Q +LGH ++TTQIYT++ + N Sbjct: 231 IKDAAERAGLAKDISPHTLRHSFATHLLEGGADVRTVQELLGHASVTTTQIYTHITADN- 289 Query: 307 GDWMMEIYDQTHP 319 + E++ HP Sbjct: 290 ---LREVWRMAHP 299 >gi|468715|emb|CAA55226.1| sss [Pseudomonas aeruginosa] Length = 302 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 102/313 (32%), Positives = 155/313 (49%), Gaps = 27/313 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L++L ER +S TL Y R L LA EK + L +R F+++ Sbjct: 8 FLEHLRSERQVSAHTLDGYR---RDLLKILAL--AEKAGLSDWNALDTRSLRTFVARLHQ 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q RSL R LS + +YL + +R K LPR L+ +AL L+D Sbjct: 63 QGQSSRSLARLLSATRGLYQYLLREGRCRHDPANGLRAPKSPRKLPRTLDADRALQLLDG 122 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + E +I R+ A+L L Y GLR+SE + L + + + +R++GKG+K+R + Sbjct: 123 AV-----EDDFIARRDQALLELFYSSGLRLSELVGLDLEWLDLKEGLVRVRGKGNKVREL 177 Query: 201 PLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR-RYLG 255 P+ + R+A+ + L P D +F G GK L P Q +RQ R LG Sbjct: 178 PVGKAARQALEAWLPLRTQAAPEDG------AVFIGRSGKRLTPRAIQLRVRQAGVRELG 231 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 L H LRHSFA+HLL + GDLR++Q +LGH ++TTQIYT+++ ++ + +YD Sbjct: 232 QHLHP--HMLRHSFASHLLESSGDLRAVQELLGHADIATTQIYTHLDFQH----LASVYD 285 Query: 316 QTHPSITQKDKKN 328 P Q + Sbjct: 286 APIPRAKQGQRDG 298 >gi|282916763|ref|ZP_06324521.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus D139] gi|283770568|ref|ZP_06343460.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus H19] gi|282319250|gb|EFB49602.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus D139] gi|283460715|gb|EFC07805.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus H19] gi|302333169|gb|ADL23362.1| site-specific recombinase XerD [Staphylococcus aureus subsp. aureus JKD6159] Length = 295 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 102/304 (33%), Positives = 164/304 (53%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTI-RQLSYTEIRAFIS 76 + +L+ ++IE+GLS T+ +Y D +++ ++ TE I+ I I RQL + I Sbjct: 6 EEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYM---TEHHISHIDFIDRQLIQECLGHLID 62 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + ++ K S+ R +S I+SF ++ + K + + + + K LP LN + L Sbjct: 63 QGQSAK----SIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLA 118 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L L T K R+ +L LLY G+R+SE + L +++ +R+ GKGDK Sbjct: 119 L-----LETPDLNKINGYRDRTMLELLYATGMRVSELIHLELEHVNLIMGFVRVFGKGDK 173 Query: 197 IRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RIVPL +V + + Y + + P L + LF + GKPL+ + I+Q Sbjct: 174 ERIVPLGDAVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKAN 233 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + T HTLRHSFATHLL NG DLR++Q +LGH +STTQ+YT+V+ + ++Y+ Sbjct: 234 IKKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYN 289 Query: 316 QTHP 319 Q HP Sbjct: 290 QFHP 293 >gi|329929830|ref|ZP_08283506.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp. HGF5] gi|328935808|gb|EGG32269.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp. HGF5] Length = 294 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 98/301 (32%), Positives = 154/301 (51%), Gaps = 16/301 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++Q LE E+GLS+ T+ SY D + FL AF E ++T R+++ T + ++ + R Sbjct: 7 EYVQYLEDEKGLSRSTIASYRADLQGFL---AFAAEREVT--HPREVNRTLLGLYVGRLR 61 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q SL R + ++SF +YL ++ + + + N K P++L +Q VD Sbjct: 62 QQGKAASSLLRCTASLRSFFQYLVRQAVIVQDPTQLLDNPKPERKPPKSLTVEQ----VD 117 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 +L T AR+ A+L LLY G+++SE ++L+ +I + LR G K RI Sbjct: 118 KLLSAPDSGTPQ-GARDKAMLELLYASGIKVSELVNLSVHDIQLEMRFLRCAVSGGKERI 176 Query: 200 VPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +P+ P +++ Y D+ + + LF G L F + I++ + + Sbjct: 177 LPITPIAAESVALYVRDMRDKLMRDAGEDALFLNSLGTRLTRQGFWKIIKKYGKLADIDE 236 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 T HTLRHSFA HLL NG DLRS+Q +LGH LSTT +Y + M E+YD H Sbjct: 237 DITPHTLRHSFAMHLLGNGADLRSVQEMLGHSALSTTGMYQSAKKS-----MKEVYDHYH 291 Query: 319 P 319 P Sbjct: 292 P 292 >gi|299821615|ref|ZP_07053503.1| tyrosine recombinase XerD [Listeria grayi DSM 20601] gi|299817280|gb|EFI84516.1| tyrosine recombinase XerD [Listeria grayi DSM 20601] Length = 296 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 95/307 (30%), Positives = 157/307 (51%), Gaps = 24/307 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L L +E+GL+ T+Q+Y+ D R F FL E IT ++ + AFI+ Sbjct: 6 EDFLHYLVVEKGLAANTIQAYKRDLRYFDSFLEI---EGIT--DPNSITRGTVVAFIAFA 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R R++ R L+ ++SF +L + ++ + K++ +LP+ L+ ++ Sbjct: 61 RDADKSPRTIARYLASLRSFFHFLLHDQKMDHDPMIQIETPKQTKALPKVLHLEEV---- 116 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL + R+ A+L +LY GLR+SE + L ++ ++ GKGDK R Sbjct: 117 -EKLLAAPDPNSILGLRDQAMLEILYATGLRVSELIHLKLDDLHLHMGFIQTIGKGDKER 175 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI------RGKPLNPGVFQRYIRQLRR 252 I+PL + + +Y + + ++ P +R G L F + ++QL + Sbjct: 176 IIPLGHTATAVLTKYLE----EARPKLRKPKYRNDYVFLNHHGGGLTRQGFWKLLKQLAQ 231 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 G+ T HTLRHSFATHLL NG DLRS+Q +LGH +STTQIYT+V + + Sbjct: 232 KAGIDKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLR----LQD 287 Query: 313 IYDQTHP 319 +Y + HP Sbjct: 288 VYKKYHP 294 >gi|227488616|ref|ZP_03918932.1| site-specific tyrosine recombinase XerC [Corynebacterium glucuronolyticum ATCC 51867] gi|227543219|ref|ZP_03973268.1| site-specific tyrosine recombinase XerC [Corynebacterium glucuronolyticum ATCC 51866] gi|227091510|gb|EEI26822.1| site-specific tyrosine recombinase XerC [Corynebacterium glucuronolyticum ATCC 51867] gi|227181028|gb|EEI62000.1| site-specific tyrosine recombinase XerC [Corynebacterium glucuronolyticum ATCC 51866] Length = 295 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 90/302 (29%), Positives = 153/302 (50%), Gaps = 20/302 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++ +L G S+ T++ Y D L+ Y + + + T +RA++ + Sbjct: 11 EDYCDHLRFNEGKSEATIRGYRSD----LLLACEY------LNGVAGFTLTGLRAWLGEA 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + +L R + ++SF + K+ E +R KS+ LP L QA ++ Sbjct: 61 VSAGKSRATLARRTAAVRSFSAWAHKQGYLEEDAARRLRVPYKSHHLPTVLTSDQAGEMM 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 N H+ E +++ R+SAIL LLY G+R++E SL ++ ++T+++ GKG+K R Sbjct: 121 GNAGSHS--EPEFL--RDSAILELLYATGMRVAELCSLDVADVDGAKNTVKVTGKGNKQR 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP R A+ ++ + LF G+RG ++P +R + G+ Sbjct: 177 VVPFGAPARNALDQWISAGRGHFATADSGDALFLGVRGGRIDPRQVRRIVETAAANTGVD 236 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T H+LRH+ ATHLL G DLR++Q LGH L TTQIYT+V+ G+ + +IY+ Sbjct: 237 -GITPHSLRHTAATHLLEGGADLRAVQEFLGHSSLQTTQIYTHVS----GERLKKIYNNA 291 Query: 318 HP 319 HP Sbjct: 292 HP 293 >gi|70733299|ref|YP_263073.1| site-specific tyrosine recombinase XerC [Pseudomonas fluorescens Pf-5] gi|123748313|sp|Q4K3W0|XERC_PSEF5 RecName: Full=Tyrosine recombinase xerC gi|68347598|gb|AAY95204.1| tyrosine recombinase XerC [Pseudomonas fluorescens Pf-5] Length = 298 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 95/300 (31%), Positives = 150/300 (50%), Gaps = 19/300 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 + +L ER +S TLQ+Y D + L F EK+ +++ L +R+ I++ Sbjct: 8 YCAHLRSERQVSPHTLQAYRRDLEKVLGFC-----EKMQVRSWTDLDIQGLRSLIARLHQ 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q RSL R LS ++ YL + + T + K LP+ L+ + L L+D Sbjct: 63 QGQSSRSLARLLSAVRGLYHYLNREGLCTHDPANGLAPPKGERRLPKTLDTDRTLQLLDG 122 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + E ++ R+ AIL L Y CGLR+SE SL + +++ GKG K R++ Sbjct: 123 AV-----EDDFLAHRDQAILELFYSCGLRLSELTSLNLDQLDLADGLVQVHGKGSKTRVL 177 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPLS 259 P+ R A+ ++ L L+ LF +G+ L P Q ++ R LG L Sbjct: 178 PVGKKARSALEQWLPL--RALSNPPDGALFVSQKGRRLGPRAIQLRVKAAGERELGQNLH 235 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHSFA+HLL + DLR++Q +LGH + TTQIYT+++ ++ + +YD HP Sbjct: 236 P--HMLRHSFASHLLESSQDLRAVQELLGHSDIKTTQIYTHLDFQH----LAAVYDSAHP 289 >gi|323439501|gb|EGA97222.1| site-specific recombinase [Staphylococcus aureus O11] gi|323441531|gb|EGA99182.1| site-specific recombinase [Staphylococcus aureus O46] Length = 295 Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 102/304 (33%), Positives = 164/304 (53%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTI-RQLSYTEIRAFIS 76 + +L+ ++IE+GLS T+ +Y D +++ ++ TE I+ I I RQL + I Sbjct: 6 EEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYM---TEHHISHIDFIDRQLIQECLGHLID 62 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + ++ K S+ R +S I+SF ++ + K + + + + K LP LN + L Sbjct: 63 QGQSAK----SIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLA 118 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L L T K R+ +L LLY G+R+SE + L +++ +R+ GKGDK Sbjct: 119 L-----LETPDLNKINGYRDRTMLELLYATGMRVSELIHLELEHVNLIMGFVRVFGKGDK 173 Query: 197 IRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RIVPL +V + + Y + + P L + LF + GKPL+ + I+Q Sbjct: 174 ERIVPLGDTVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKAN 233 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + T HTLRHSFATHLL NG DLR++Q +LGH +STTQ+YT+V+ + ++Y+ Sbjct: 234 IKKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYN 289 Query: 316 QTHP 319 Q HP Sbjct: 290 QFHP 293 >gi|187930760|ref|YP_001901247.1| site-specific tyrosine recombinase XerC [Ralstonia pickettii 12J] gi|254799354|sp|B2U7W2|XERC_RALPJ RecName: Full=Tyrosine recombinase xerC gi|187727650|gb|ACD28815.1| tyrosine recombinase XerC [Ralstonia pickettii 12J] Length = 328 Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 100/325 (30%), Positives = 164/325 (50%), Gaps = 39/325 (12%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L+ ER LS TLQSY TR+ + + I + QL IR +++ Sbjct: 22 YLDALKFERQLSPHTLQSY---TRELAVLQRLGAQHAANID-LTQLQSHHIRRMMAQLHG 77 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVD 139 + RS+ R+LS + + K++ R +N ++ +R K LP+AL+ +QA+ L++ Sbjct: 78 DGLSGRSIARALSAWRGWFKWMALRDAAVTANPVDGVRAPKSPKRLPKALSVEQAVALME 137 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----------MD-DQSTL 188 L ET R+ A+ L Y CGLR+SE +SL +++ +D + + Sbjct: 138 Q-LPGDDAET----IRDRAVNELFYSCGLRLSELVSLDMRHVKAGAYESASWLDLEAREV 192 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYY---------DLCPFDLNLNIQLPLFRGIRGKPLN 239 ++ GKG K R VP+ +A+ + D P D + LF RGK L Sbjct: 193 QVLGKGSKRRTVPVGTKATEALAAWLAVRAQLAKSDAAPEDAHA-----LFLSPRGKRLA 247 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 Q +++ G+P H LRHSFATH+L + GDLR++Q +LGH +++TQ+YT Sbjct: 248 QRQIQLRMKRNAIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT 307 Query: 300 NVNSKNGGDWMMEIYDQTHPSITQK 324 +++ ++ + +IYDQ HP +K Sbjct: 308 SLDFQH----LAKIYDQAHPRAKKK 328 >gi|227524454|ref|ZP_03954503.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus hilgardii ATCC 8290] gi|227088413|gb|EEI23725.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus hilgardii ATCC 8290] Length = 295 Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 93/303 (30%), Positives = 159/303 (52%), Gaps = 19/303 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L L +ERGLS+ T++ Y+ D + + F T++ + L+Y E + Sbjct: 7 DYLHFLRVERGLSENTIKGYQQDLSEAIHFFQKTTKDISKVDQFLILNYLE------NLQ 60 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 +K ++ R++S +++F +YL + + + +L + + K+S +LP L+ + Sbjct: 61 QEKKSRNTVIRTVSSLRNFFRYLAQFGVVPDDPMLKVDSPKQSKTLPDVLSVSEV----- 115 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 N LL + +K + R+ A+L LY GLR+SE ++L ++ ++ GKGD+ RI Sbjct: 116 NKLLSMPNVSKPLGVRDRAMLETLYATGLRVSELVNLRLVDLHLPMKLIQTVGKGDRERI 175 Query: 200 VPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +P+ I +Y DL N +F G+ L + I++ + G+ Sbjct: 176 IPIGDVAIDWITQYLKTTRIDLLRKRTNTDF-VFLNAHGRRLTRQAIWQMIKKYVKLAGI 234 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 T HTLRHSFATHLL NG DLR +Q +LGH +STTQIYT+++ K+ + E+Y + Sbjct: 235 KRHVTPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHISHKH----LTEVYQK 290 Query: 317 THP 319 HP Sbjct: 291 FHP 293 >gi|83720176|ref|YP_440728.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis E264] gi|167617501|ref|ZP_02386132.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis Bt4] gi|257140623|ref|ZP_05588885.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis E264] gi|83654001|gb|ABC38064.1| tyrosine recombinase XerC [Burkholderia thailandensis E264] Length = 306 Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 89/319 (27%), Positives = 160/319 (50%), Gaps = 33/319 (10%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L NL R LS TL++Y + + + + + L+ ++R +++ Sbjct: 8 DYLSNLRHVRKLSDHTLRAYAHELGEL--------RKLANGRPLESLTAVDMRGAVARAH 59 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + RS+ LS ++F ++ + + + +R K++ +LP+AL+ A L+D Sbjct: 60 AGGLSARSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKRAKTLPKALSVDDAAALMD 119 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-----------QSTL 188 T+ R+ AIL L Y GLR++E + L + D ++ + Sbjct: 120 APTAGTAEHL-----RDHAILELFYSSGLRLAELIGLDVEYTKDGDYRSEGWLDLAEAEV 174 Query: 189 RIQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 ++GKG+K R VP+ RKAI L + + PLF +RG ++PGV + Sbjct: 175 TVRGKGEKERKVPV---GRKAIDALNAWLAVRGEFVKRDARPLFLSVRGNRMSPGVVRER 231 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 +++ G+P + H LRHSFATH+L + GDLR++Q +LGH +S TQ+YT+++ ++ Sbjct: 232 VKRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQH- 290 Query: 307 GDWMMEIYDQTHPSITQKD 325 + +IYD HP ++D Sbjct: 291 ---LAKIYDSAHPRAKKRD 306 >gi|53724457|ref|YP_104732.1| site-specific tyrosine recombinase XerC [Burkholderia mallei ATCC 23344] gi|67639320|ref|ZP_00438190.1| tyrosine recombinase XerC [Burkholderia mallei GB8 horse 4] gi|121598868|ref|YP_994214.1| site-specific tyrosine recombinase XerC [Burkholderia mallei SAVP1] gi|124383751|ref|YP_001028133.1| site-specific tyrosine recombinase XerC [Burkholderia mallei NCTC 10229] gi|126441319|ref|YP_001057248.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei 668] gi|126449297|ref|YP_001082944.1| site-specific tyrosine recombinase XerC [Burkholderia mallei NCTC 10247] gi|167003305|ref|ZP_02269093.1| tyrosine recombinase XerC [Burkholderia mallei PRL-20] gi|167892320|ref|ZP_02479722.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei 7894] gi|167900817|ref|ZP_02488022.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei NCTC 13177] gi|217424901|ref|ZP_03456397.1| tyrosine recombinase XerC [Burkholderia pseudomallei 576] gi|237810385|ref|YP_002894836.1| tyrosine recombinase XerC [Burkholderia pseudomallei MSHR346] gi|254175248|ref|ZP_04881909.1| tyrosine recombinase XerC [Burkholderia mallei ATCC 10399] gi|254201831|ref|ZP_04908195.1| tyrosine recombinase XerC [Burkholderia mallei FMH] gi|254207161|ref|ZP_04913512.1| tyrosine recombinase XerC [Burkholderia mallei JHU] gi|254359667|ref|ZP_04975938.1| tyrosine recombinase XerC [Burkholderia mallei 2002721280] gi|52427880|gb|AAU48473.1| integrase/recombinase XerC [Burkholderia mallei ATCC 23344] gi|121227678|gb|ABM50196.1| tyrosine recombinase XerC [Burkholderia mallei SAVP1] gi|124291771|gb|ABN01040.1| integrase/recombinase XerC [Burkholderia mallei NCTC 10229] gi|126220812|gb|ABN84318.1| tyrosine recombinase XerC [Burkholderia pseudomallei 668] gi|126242167|gb|ABO05260.1| tyrosine recombinase XerC [Burkholderia mallei NCTC 10247] gi|147747725|gb|EDK54801.1| tyrosine recombinase XerC [Burkholderia mallei FMH] gi|147752703|gb|EDK59769.1| tyrosine recombinase XerC [Burkholderia mallei JHU] gi|148028881|gb|EDK86813.1| tyrosine recombinase XerC [Burkholderia mallei 2002721280] gi|160696293|gb|EDP86263.1| tyrosine recombinase XerC [Burkholderia mallei ATCC 10399] gi|217391921|gb|EEC31947.1| tyrosine recombinase XerC [Burkholderia pseudomallei 576] gi|237506023|gb|ACQ98341.1| tyrosine recombinase XerC [Burkholderia pseudomallei MSHR346] gi|238519856|gb|EEP83322.1| tyrosine recombinase XerC [Burkholderia mallei GB8 horse 4] gi|243061115|gb|EES43301.1| tyrosine recombinase XerC [Burkholderia mallei PRL-20] Length = 310 Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 88/319 (27%), Positives = 162/319 (50%), Gaps = 33/319 (10%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L NL R LS TL++Y + + + + + L+ ++R+ +++ Sbjct: 12 DYLSNLRHVRKLSDHTLRAYAHELDEL--------KRLANGRPLDSLTAVDMRSAVARAH 63 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + RS+ LS ++F ++ + + + +R K++ +LP+AL+ L+D Sbjct: 64 AGGLSARSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKRAKTLPKALSVDDTAALMD 123 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-----------QSTL 188 T+ R+ AIL L Y GLR++E + L + + D ++ + Sbjct: 124 APTAGTAESL-----RDHAILELFYSSGLRLAELIGLDIEYVKDGAYRSAGWLDLAEAEV 178 Query: 189 RIQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 ++GKGDK R VP+ RKA+ L + + + PLF +RG ++PGV + Sbjct: 179 TVRGKGDKERKVPV---GRKALDALHAWLAVRGEFVKHDPRPLFLSVRGNRMSPGVVRER 235 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 +++ G+P + H LRHSFATH+L + GDLR++Q +LGH +S TQ+YT+++ ++ Sbjct: 236 VKRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQH- 294 Query: 307 GDWMMEIYDQTHPSITQKD 325 + +IYD HP ++D Sbjct: 295 ---LAKIYDSAHPRAKKRD 310 >gi|104783227|ref|YP_609725.1| site-specific tyrosine recombinase XerD [Pseudomonas entomophila L48] gi|95112214|emb|CAK16941.1| site-specific tyrosine recombinase, integrase family [Pseudomonas entomophila L48] Length = 298 Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 100/309 (32%), Positives = 152/309 (49%), Gaps = 32/309 (10%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKR 78 +L L +E+GLS T SY D +F + E+ + + R+L I ++ R Sbjct: 11 QFLDALWLEKGLSDNTRTSYRSD---LALFNGWLQEQGVALPDAGREL----ILDHLAWR 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q RS R LSG++ F +YL + ++ L + + LP++L+E Sbjct: 64 FDQAYKPRSTARFLSGVRGFYRYLLRERMIAVDPTLQVDMPQLGRPLPKSLSEADV---- 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL + I R+ A+L +LY CGLR++E +SLT + Q LR+ GKG K R Sbjct: 120 -EALLKAPDLGEAIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKER 178 Query: 199 IVPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 +VP+ +R E + P D+ LF +RG+ + F I+ Sbjct: 179 LVPMGEEAVLWLERYLRDGRAELLNGRPSDV-------LFPSLRGEQMTRQTFWHRIKHH 231 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 R G+ + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + Sbjct: 232 ARVAGIDKPLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKAR----L 287 Query: 311 MEIYDQTHP 319 +++ Q HP Sbjct: 288 QQLHAQHHP 296 >gi|54399934|gb|AAV34206.1| site-specific recombinase [Pseudomonas fluorescens] Length = 298 Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 102/309 (33%), Positives = 153/309 (49%), Gaps = 32/309 (10%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISKR 78 +L L +E+GLS T +Y D +F + E + I R+L I ++ R Sbjct: 11 QFLDALWLEKGLSDNTRDAYRSD---LALFNGWLQENHLELINAGREL----ILDHLAWR 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q RS R LSG++ F +YL + K+ L + + LP++L+E Sbjct: 64 LEQNYKPRSTARFLSGLRGFYRYLLREKLIAVDPTLRVEMPQLGRPLPKSLSEADV---- 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL ++ I R+ A+L +LY CGLR++E +SLT + + Q LR+ GKG K R Sbjct: 120 -EALLAAPDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKER 178 Query: 199 IVPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 +VP+ VR A E P D LF +RG+ + F I+ Sbjct: 179 LVPMGEEAIVWVERYVRDARHELLGGRPSD-------ALFPSLRGEQMTRQTFWHRIKHQ 231 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 + G+ S + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + Sbjct: 232 AKVAGINKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----L 287 Query: 311 MEIYDQTHP 319 +++ + HP Sbjct: 288 QDLHAKHHP 296 >gi|269215886|ref|ZP_06159740.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122] gi|269130836|gb|EEZ61912.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122] Length = 315 Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 98/317 (30%), Positives = 146/317 (46%), Gaps = 35/317 (11%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 LL +++L L IE+G S LT++SY D ++ FL + + R ++ + + Sbjct: 17 LLSSVRDFLSFLSIEKGSSDLTVRSYAADLEDYVAFL-----DSEGVHAARDVTRDALAS 71 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 +++ + S++R +S +K F +L + + + LP L+ Q Sbjct: 72 YVADLSGRGYAAASIERHVSALKGFHAFLVRDGLVASDPACALPLPGVPARLPDVLSIDQ 131 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 TL+D + RN+ L LLYGCGLR SE L + D+ LRI GK Sbjct: 132 VNTLLDQEF-----REGPLGVRNACALELLYGCGLRASELSGLDAGDAFLDEGILRIVGK 186 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-----------IRGKPLNPGV 242 G + RIVP+ S + + Y L PL R RG L+ Sbjct: 187 GSRERIVPIGGSAARCLASY---------LEDARPLLRSPRRLTPAVMLNARGGRLSRQS 237 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 +R+ +G+ HTLRHSFATHLL G DLR+IQ +LGH +STTQIYT+V+ Sbjct: 238 IHSIVREAGHVIGIK-DLHPHTLRHSFATHLLEGGADLRAIQEMLGHSDISTTQIYTHVD 296 Query: 303 SKNGGDWMMEIYDQTHP 319 + + E Y HP Sbjct: 297 RTH----VREEYLSAHP 309 >gi|217974605|ref|YP_002359356.1| tyrosine recombinase XerD [Shewanella baltica OS223] gi|217499740|gb|ACK47933.1| tyrosine recombinase XerD [Shewanella baltica OS223] Length = 300 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 101/300 (33%), Positives = 155/300 (51%), Gaps = 16/300 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +L +GLS TL +Y D R F + ++ +T+ + Q ++RA+++ R Sbjct: 14 FLDDLWSSKGLSDNTLSAYRTDLRHFD---RYQGQQGVTLLAVSQ---ADVRAYLAFRVE 67 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q S R LS ++ F YL + K + + + K + LP +L+E Q VD Sbjct: 68 QDFARTSSARLLSSLRRFYTYLVQTKQILADPMALVESPKLTRHLPDSLSESQ----VDR 123 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 +L + E ++ R+ A+L LLY GLR+SE + LT + + Q +RI GKG K R+V Sbjct: 124 LLSEPNVEDA-VECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLV 182 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 PL + Y +L N Q + F RG+ + F I+ G+ + Sbjct: 183 PLGELAITEVENYMKFARQELLGNKQSDVVFPSKRGQMMTRQTFWHRIKLYALRAGIETA 242 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + E++ Q HP Sbjct: 243 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARAR----LQELHQQHHP 298 >gi|313676501|ref|YP_004054497.1| integrase family protein [Marivirga tractuosa DSM 4126] gi|312943199|gb|ADR22389.1| integrase family protein [Marivirga tractuosa DSM 4126] Length = 293 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 87/302 (28%), Positives = 153/302 (50%), Gaps = 12/302 (3%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 R + + L+ E+ S TL SY+ D QF + Y E++ + + + IR+++ Sbjct: 2 RDTFFKYLQFEKRYSSHTLVSYQNDLDQF----SKYLEDQFQTCDLLKAEHRHIRSWVVN 57 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 + RS+ R + ++SF K+ R+ ++ ++ LK + LP+ + EK+ Sbjct: 58 LMQDGVKPRSINRKIIALRSFYKFAISREAIHQNPTQKIKALKSAKELPQFVQEKE---- 113 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 +DN+L H + R++ I+ LLYG G+R++E + L + T+RI GKG+K Sbjct: 114 MDNLLSHIVFPEDFEGNRDALIMELLYGTGMRLAELIGLKEDDFNRQAGTIRILGKGNKE 173 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 R+VP + + + +Y + N Q PL G P + R ++ + Sbjct: 174 RVVPFHLEIGRRLDKYIFHKKELFSHNGQSPLIVSNNGSKAYPMLINRITKKYLDQVTTI 233 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + H LRH+FATHLL+ G DL +++ +LGH L+ TQ+YT+ N D + +++DQ Sbjct: 234 SKRSPHVLRHTFATHLLNKGADLNAVKDMLGHSSLAATQVYTH----NSLDKLKKVFDQA 289 Query: 318 HP 319 HP Sbjct: 290 HP 291 >gi|293376592|ref|ZP_06622820.1| tyrosine recombinase XerD [Turicibacter sanguinis PC909] gi|292644818|gb|EFF62900.1| tyrosine recombinase XerD [Turicibacter sanguinis PC909] Length = 305 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 102/307 (33%), Positives = 165/307 (53%), Gaps = 17/307 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L +L I+RGLS T SYE D ++L++L + ++ + ++ ++ ++ Sbjct: 11 DFLAHLLIDRGLSLNTKISYERDLTEYLLYL-----QNQSVHQLDEIRREHVQQYLITLY 65 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + + +S+ R LS I+SF +YL KI+ N L +S L R L E ++ V+ Sbjct: 66 ERNLNTKSVARHLSAIRSFHQYLMIEKISNT----NPCELIESPKLKRHLPEILSIDEVE 121 Query: 140 NVLLHTSHETKWI-DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 ++L +S TK + D RN A++ L+Y GLR+SE L L ++ +R GKGDK R Sbjct: 122 HLL--SSFNTKTVNDIRNKAMVELMYASGLRVSELLQLKLDDVHLSMMFVRCVGKGDKER 179 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 IVP+ + + Y D L LF G+ + F + +++ + G+ Sbjct: 180 IVPIGEVATELLQLYLDTARPKLLKKSNDWLFLNRFGEVMTRQGFWKILKKQAKEAGIEK 239 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + H LRHSFATHL+ NG DLR +Q +LGH +STTQIYT+++ ++ D +YD H Sbjct: 240 EISPHKLRHSFATHLIENGVDLRLVQEMLGHSDISTTQIYTHISKEHLKD----VYDLYH 295 Query: 319 PSITQKD 325 P +QKD Sbjct: 296 PR-SQKD 301 >gi|126173088|ref|YP_001049237.1| tyrosine recombinase XerD [Shewanella baltica OS155] gi|125996293|gb|ABN60368.1| tyrosine recombinase XerD [Shewanella baltica OS155] Length = 309 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 101/300 (33%), Positives = 155/300 (51%), Gaps = 16/300 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +L +GLS TL +Y D R F + ++ +T+ + Q ++RA+++ R Sbjct: 23 FLDDLWSSKGLSDNTLSAYRTDLRHFD---RYQGQQGVTLLAVSQ---ADVRAYLAFRVE 76 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q S R LS ++ F YL + K + + + K + LP +L+E Q VD Sbjct: 77 QDFARTSSARLLSSLRRFYTYLVQTKQILADPMALVESPKLTRHLPDSLSESQ----VDR 132 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 +L + E ++ R+ A+L LLY GLR+SE + LT + + Q +RI GKG K R+V Sbjct: 133 LLSEPNVEDA-VECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLV 191 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 PL + Y +L N Q + F RG+ + F I+ G+ + Sbjct: 192 PLGELAITEVESYMKFARQELLGNKQSDVVFPSKRGQMMTRQTFWHRIKLYALRAGIETA 251 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + E++ Q HP Sbjct: 252 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARAR----LQELHQQHHP 307 >gi|189499779|ref|YP_001959249.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides BS1] gi|189495220|gb|ACE03768.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides BS1] Length = 305 Score = 139 bits (349), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 98/305 (32%), Positives = 158/305 (51%), Gaps = 21/305 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L L +ER S T+ SY D ++L+F+ ++E++I + + T+I+ FI + Sbjct: 15 SFLNYLTLERNFSSHTITSYANDLNRYLLFMQ-HSEKQI-----KAVVLTDIQHFIQELH 68 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + RS+ R++S I+SF K+L + I E+ ++ K LP L+ + L+D Sbjct: 69 EAGLESRSISRNISAIRSFHKFLIRENILEENAAKSLHQPKPGLHLPTVLSVDEVFRLLD 128 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 LL ++ R+ +L LLY G+R+SE +++ N D RI GKG K R+ Sbjct: 129 APLLEKPPGKYFL--RDKVLLELLYATGVRVSELINIQQSNCYLDAGFARIFGKGSKERL 186 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYL 254 VP+ + + I Y +L LN+ LF RGK L+ +R+L Sbjct: 187 VPVGHTAIEWIRRYQQ----ELRLNMANRESGDYLFLNARGKQLSRMSAWNIVRRLSSVA 242 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 GL + HTLRH+FATHLL G DLR++Q +LGH + TQIYT+++ ++ E + Sbjct: 243 GLTKKISPHTLRHTFATHLLEGGADLRAVQEMLGHSSIIATQIYTHIDR----SFIKEAH 298 Query: 315 DQTHP 319 HP Sbjct: 299 KTFHP 303 >gi|308069572|ref|YP_003871177.1| Tyrosine recombinase xerD [Paenibacillus polymyxa E681] gi|305858851|gb|ADM70639.1| Tyrosine recombinase xerD [Paenibacillus polymyxa E681] Length = 317 Score = 138 bits (348), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 92/311 (29%), Positives = 155/311 (49%), Gaps = 26/311 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q ++Q +E E+GLS+ TL++Y+ D +QF F E I+ + + + ++ + Sbjct: 9 QPFVQYMEEEKGLSRSTLEAYQRDVQQFAEFA-----ESCGIEQPDNVQRSHLVLYLGRL 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + Q ++ RS++ I+SF +L + IT + + LP+A +K ++ Sbjct: 64 KEQGKAAATISRSVASIRSFFHFLIREGITIHDPSVLL-------ELPKATKKKPSVLTQ 116 Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 D + LL T R+ A+L LLY G+R+SE ++L +++ D + G+ K Sbjct: 117 DEIERLLDAPDVTAPQGVRDKAMLELLYATGIRVSELIALNVRDVRTDLRFVHCGGEAGK 176 Query: 197 IRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYIR 248 R+VP+ + Y D L Q+ +F + G+ L+ F + I+ Sbjct: 177 ERVVPISREASQWAQAYMDEQRLLLLKSGQGEEAQVEQEAMFLNVSGQRLSRQGFWKMIK 236 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 + + G+ T HTLRHSFA H+L G DLRS+Q +LGH LSTTQ+Y +N Sbjct: 237 KYGQEAGISEDITPHTLRHSFAVHMLEGGADLRSVQEMLGHADLSTTQVYAQTARRN--- 293 Query: 309 WMMEIYDQTHP 319 M E+Y++ HP Sbjct: 294 -MKEVYEKHHP 303 >gi|325068736|ref|ZP_08127409.1| tyrosine recombinase XerD [Actinomyces oris K20] Length = 307 Score = 138 bits (348), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 99/315 (31%), Positives = 156/315 (49%), Gaps = 27/315 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L +L +ERGLS TL +YE D ++L +L I +++S ++ F+ Sbjct: 2 RGYLAHLRVERGLSPHTLSAYERDLGRYLRYL-----RSAGISAPQEVSRNDVAGFLEVL 56 Query: 79 RTQKIGDRSLK-----RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 RT G R L R+++ ++ + K+L T+E +R + LP+AL + Sbjct: 57 RTGSDGARPLASSSASRTVTAVRGWHKFLLAEGTTSEDPSATVRPPQPGRRLPKALGVDE 116 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L++ + S + R+ A+L +LY G RISEA+ L ++ D LR+ GK Sbjct: 117 VRRLLEAAGVDDSP----VSLRDRALLEVLYATGARISEAVGLVVDDLDTDSKLLRLFGK 172 Query: 194 GDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLR 251 G K R+VP+ +A+ Y P +P +F G+PL+ ++Q Sbjct: 173 GRKERVVPMGAYAWEALDAYLVRGRPVLAEKGRGVPQVFLNTLGRPLSRQSAWAVLQQAA 232 Query: 252 RYLGLPLSTTA-------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 GL + A HTLRHSFATHLL+ G D+R +Q +LGH ++TTQIYT V Sbjct: 233 ERAGLIGTDGADERRISPHTLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTKVTV- 291 Query: 305 NGGDWMMEIYDQTHP 319 D + E+Y +HP Sbjct: 292 ---DHLREVYATSHP 303 >gi|83643202|ref|YP_431637.1| site-specific tyrosine recombinase XerC [Hahella chejuensis KCTC 2396] gi|83631245|gb|ABC27212.1| tyrosine recombinase XerC [Hahella chejuensis KCTC 2396] Length = 301 Score = 138 bits (348), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 92/308 (29%), Positives = 160/308 (51%), Gaps = 15/308 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + ++ L ER S T+ SY D R+ + + + + + + L ++R +S+ Sbjct: 8 EAFIAYLHSERRYSVHTVSSYNRDLRRVVAYC-----DANGVASWKDLHTPQLRQALSEF 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + +G RSL R LS ++ F +YL + ++ E+ +R K + LP ++ QA L+ Sbjct: 63 HRRGLGSRSLHRLLSTVRRFYEYLLRERLVYENPANGVRAPKMTKRLPATMDVDQAKQLL 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D+ + E + ++ R+ AI L Y G+R+SE L ++ + R+ GKG K R Sbjct: 123 DSPV-----EEEELEIRDQAIAELFYTSGIRLSELAGLDLAHLDLSEGLARVLGKGGKER 177 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +VP+ RKA+ ++ L + + +F +RG L+ Q +RQ + G Sbjct: 178 LVPVGGQARKALRDWLQ-ARASLAVAGEPAVFVSLRGGRLSRRSIQERLRQWAQKKGFSG 236 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 H RHS A+HLL + GDLR++Q +LGH +STTQIYT++N ++ + E+YD+ H Sbjct: 237 RLYPHLFRHSCASHLLESSGDLRAVQELLGHADISTTQIYTHLNFQH----LAEVYDKAH 292 Query: 319 PSITQKDK 326 P ++ K Sbjct: 293 PRARKRKK 300 >gi|308234475|ref|ZP_07665212.1| integrase family protein [Atopobium vaginae DSM 15829] gi|328944068|ref|ZP_08241533.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829] gi|327492037|gb|EGF23811.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829] Length = 337 Score = 138 bits (348), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 94/293 (32%), Positives = 153/293 (52%), Gaps = 21/293 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++++Q+L + LS T ++YE D + ++ +L + + + I S+ ++R+++++ Sbjct: 42 ESFIQHLMTTQNLSPNTTRAYETDLKAYVRWLIKNSYDLLDI------SHKQLRSYLAQL 95 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + R++ R LS I+++ K+L ++ +T + + + + K +LP L+E Sbjct: 96 YAARYASRTINRHLSAIRAWYKWLVRKGLTKKDSAAALASPKIPKTLPHVLSESSI---- 151 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL T E R+ A+L LLY G RISEA L +I D +R+ GKG K R Sbjct: 152 -EKLLATCQEDTVCGLRDRALLELLYATGCRISEAAHLCVSDISFDSKQVRLFGKGSKER 210 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQ---------LPLFRGIRGKPLNPGVFQRYIRQ 249 IVP+ P + IL Y + L+ Q +F RGK ++ + Sbjct: 211 IVPIYPECAR-ILHMYLTTARPVLLSKQKNQAQAQTNQHVFISTRGKAMSDQALRYVFEH 269 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 R L T HT+RHSFAT LLS+G DLRS+Q +LGH L+TTQIYT+V+ Sbjct: 270 YMRLSHLQEIATPHTMRHSFATELLSHGADLRSVQELLGHASLATTQIYTHVS 322 >gi|170723312|ref|YP_001751000.1| site-specific tyrosine recombinase XerD [Pseudomonas putida W619] gi|169761315|gb|ACA74631.1| tyrosine recombinase XerD [Pseudomonas putida W619] Length = 298 Score = 138 bits (348), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 99/309 (32%), Positives = 152/309 (49%), Gaps = 32/309 (10%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKR 78 +L L +E+GLS T SY D +F + + + + R+L I ++ R Sbjct: 11 QFLDALWLEKGLSDNTRVSYRSD---LALFNGWLQDHGLALPAAGREL----ILDHLAWR 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q RS R LSG++ F +YL + K+ L + + LP++L+E Sbjct: 64 LDQGYKPRSTARFLSGLRGFFRYLLREKLIAVDPTLQIEMPQLGKPLPKSLSEADV---- 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + LL + I R+ A+L +LY CGLR++E +SL + Q LR+ GKG K R Sbjct: 120 -DALLQAPDLGEAIGQRDRAMLEVLYACGLRVTELVSLALDQVNLRQGVLRVMGKGSKER 178 Query: 199 IVPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 +VP+ +R +E + P D+ LF +RG+ + F I+ Sbjct: 179 LVPMGEEAVLWLERYLRDGRVELLNGRPSDV-------LFPSLRGEQMTRQTFWHRIKHH 231 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 R G+ + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + Sbjct: 232 ARIAGIDKPLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKAR----L 287 Query: 311 MEIYDQTHP 319 +++ Q HP Sbjct: 288 QQLHAQHHP 296 >gi|167568329|ref|ZP_02361203.1| site-specific tyrosine recombinase XerC [Burkholderia oklahomensis C6786] Length = 306 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 90/319 (28%), Positives = 162/319 (50%), Gaps = 33/319 (10%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L NL R LS TL++Y + + ++ + + L+ ++R +++ Sbjct: 8 DYLSNLRHVRKLSDHTLRAYAHELDEL--------KKLANGRPLESLTAVDVRGAVARAH 59 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + RS+ LS ++F ++ + + + +R K++ LP+AL+ A L+D Sbjct: 60 AGGLSARSISHRLSAWRAFYRWFAQHVEMNANPVATIRAPKRAKMLPKALSVDDAAALMD 119 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT----------PQNIMD-DQSTL 188 T+ R+ AIL L Y GLR++E + L + +D ++ + Sbjct: 120 APASGTAESL-----RDHAILELFYSSGLRLAELIGLDVAYVKIGEYRSEGWLDLAEAEV 174 Query: 189 RIQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 ++GKGDK R VP+ RKAI L + + + PLF +RG ++PGV + Sbjct: 175 TVRGKGDKERKVPV---GRKAIDALNAWLAVRGEFVRHDPHPLFLSVRGNRMSPGVVRGR 231 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 +++ G+P + H LRHSFATH+L + GDLR++Q +LGH +S TQ+YT+++ ++ Sbjct: 232 VKRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQH- 290 Query: 307 GDWMMEIYDQTHPSITQKD 325 + +IYD HP ++D Sbjct: 291 ---LAKIYDSAHPRAKKRD 306 >gi|167561111|ref|ZP_02354027.1| site-specific tyrosine recombinase XerC [Burkholderia oklahomensis EO147] Length = 306 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 90/319 (28%), Positives = 162/319 (50%), Gaps = 33/319 (10%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L NL R LS TL++Y + + ++ + + L+ ++R +++ Sbjct: 8 DYLSNLRHVRKLSDHTLRAYAHELDEL--------KKLANGRPLESLTAVDVRGAVARAH 59 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + RS+ LS ++F ++ + + + +R K++ LP+AL+ A L+D Sbjct: 60 AGGLSARSISHRLSAWRAFYRWFAQHVEMNANPVATIRAPKRAKMLPKALSVDDAAALMD 119 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT----------PQNIMD-DQSTL 188 T+ R+ AIL L Y GLR++E + L + +D ++ + Sbjct: 120 APASGTAESL-----RDHAILELFYSSGLRLAELIGLDVAYVKIGEYRSEGWLDLAEAEV 174 Query: 189 RIQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 ++GKGDK R VP+ RKAI L + + + PLF +RG ++PGV + Sbjct: 175 TVRGKGDKERKVPV---GRKAIDALNAWLAVRGEFVRHDPHPLFLSVRGNRMSPGVVRGR 231 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 +++ G+P + H LRHSFATH+L + GDLR++Q +LGH +S TQ+YT+++ ++ Sbjct: 232 VKRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQH- 290 Query: 307 GDWMMEIYDQTHPSITQKD 325 + +IYD HP ++D Sbjct: 291 ---LAKIYDSAHPRAKKRD 306 >gi|317128498|ref|YP_004094780.1| tyrosine recombinase XerD [Bacillus cellulosilyticus DSM 2522] gi|315473446|gb|ADU30049.1| tyrosine recombinase XerD [Bacillus cellulosilyticus DSM 2522] Length = 296 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 89/305 (29%), Positives = 159/305 (52%), Gaps = 14/305 (4%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 +E + +L L +ERGLSK T ++Y D ++ ++ + +K + +++ I ++ Sbjct: 3 QELREFLHYLIVERGLSKNTTEAYNRDLTAYIQYIESHENKK----DVNEINRPAIMQYL 58 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 + ++ R++S I++F ++L + ++++ +++ K+ LP+ L+ + Sbjct: 59 YFLKDNGRAPTTITRNISSIRAFHQFLLRERLSSSDPTIHISRPKQEKKLPKILSTTEVE 118 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L+ S + ++ RN A+L +LY G+R+SE L+ ++ D +R GKG+ Sbjct: 119 ALIS-----ASVKNPALNIRNKAMLEVLYATGIRVSELCQLSLSDLHLDMGFIRCIGKGN 173 Query: 196 KIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 K RI+P+ KA+ Y P L LF G ++ F + I+ L + Sbjct: 174 KERIIPIGNVATKALETYLQKSRPTLLKKQAHSILFVNHHGNKMSRQGFWKIIKLLAKEA 233 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 + T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT++ M ++Y Sbjct: 234 NIKKELTPHTLRHSFATHLLENGADLRAVQEMLGHVDISTTQIYTHITKTR----MKDVY 289 Query: 315 DQTHP 319 + HP Sbjct: 290 SRYHP 294 >gi|238028907|ref|YP_002913138.1| site-specific tyrosine recombinase XerC [Burkholderia glumae BGR1] gi|237878101|gb|ACR30434.1| Site-specific recombinase XerC [Burkholderia glumae BGR1] Length = 306 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 92/324 (28%), Positives = 159/324 (49%), Gaps = 45/324 (13%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L+ R LS TL+ Y + F + + + L+ ++R+ +++ Sbjct: 9 YLSYLQHVRQLSAHTLRGYAHELAALTAF--------ASGRPLASLTAADMRSAVARAHA 60 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS+ LS ++F ++ +R + + +R K++ +LP+AL+ A TL+++ Sbjct: 61 GGLSARSIAHRLSAWRAFYRWYAQRVEMPANPVATVRAPKRARALPKALSVDDANTLMES 120 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-----------QSTLR 189 T R+ AI+ L Y GLR++E + L + D ++ L Sbjct: 121 AFPDTPEGL-----RDRAIVELFYSSGLRLAELVGLDVHYVNADGYRSAGWLDRGEAELS 175 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--------LPLFRGIRGKPLNPG 241 + GKG K R VP+ RKA L D L ++ PLF +RG + PG Sbjct: 176 VLGKGGKERKVPV---GRKA------LEALDAWLAVREGWVRGDPHPLFLSVRGNRMAPG 226 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 V + +++ R G+P + H LRHSFATH+L + GDLR++Q +LGH +S TQ+YT++ Sbjct: 227 VVRERVKRAARVAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSL 286 Query: 302 NSKNGGDWMMEIYDQTHPSITQKD 325 + ++ + IYD HP ++D Sbjct: 287 DFQH----LARIYDSAHPRAKKRD 306 >gi|56963547|ref|YP_175278.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16] gi|56909790|dbj|BAD64317.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16] Length = 297 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 91/302 (30%), Positives = 156/302 (51%), Gaps = 15/302 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q ++ +++E+GLS T++SY D +Q+ +L +K I ++ + ++ ++ Sbjct: 8 QEFIHFIKVEKGLSPNTIESYARDLKQYGAYL-----KKRGIDQFAKVDRSTLQHYLFTL 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + ++ R+++ +++ ++L + K T L + + LP L+ ++ Sbjct: 63 KETGKSSATIARNVTTLRALHQFLYREKWTDHDPTLWIETPRIDKKLPGVLSIEEV---- 118 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + LL + RN A+L LLY G+R++E +SL ++ +R+ GKG+K R Sbjct: 119 -DALLAAPDSSTPFGVRNKAMLELLYASGMRVTELISLGLDDVHLSMGFVRVIGKGNKER 177 Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 IVPL KA+ Y + L LF G+P++ F + ++QL + + Sbjct: 178 IVPLGKEATKALNTYLERGRGALLKHERHDKLFVNHHGRPISRQGFWKIMKQLAKTANIE 237 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + HTLRHSFATHLL NG DLRS+Q +LGH LSTTQIYT+V M ++Y + Sbjct: 238 KDFSPHTLRHSFATHLLENGADLRSVQEMLGHADLSTTQIYTHVTKTR----MKDVYSRY 293 Query: 318 HP 319 HP Sbjct: 294 HP 295 >gi|51892959|ref|YP_075650.1| recombinase [Symbiobacterium thermophilum IAM 14863] gi|51856648|dbj|BAD40806.1| recombinase [Symbiobacterium thermophilum IAM 14863] Length = 294 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 97/302 (32%), Positives = 150/302 (49%), Gaps = 16/302 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++ L +ERGL+ TL+SY D RQ+ +L E+++ + + + + ++ K Sbjct: 6 HEFINYLSVERGLATNTLESYGRDLRQYYQYLG---EDQVDLDAVSRSTIINYLMYLQK- 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q ++ R L+ +K+F ++L + K N+ + K LPR L + Sbjct: 62 --QGKATATIARRLAALKAFYQFLVREKRIKTDPTANLESPKLEKRLPRVLTVSEV---- 115 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL + R+ A+L LLY G+R+SE +SL +++ + +R GKG K R Sbjct: 116 -ERLLAQPDPSLPAGLRDRAMLELLYATGIRVSELVSLNIEDVNLETGYIRCTGKGSKER 174 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 IVPL K + EY P + + LF G L F + +++ + Sbjct: 175 IVPLGSLAIKWVKEYLQQGRPKLVKDREEAALFVNHHGHRLTRQGFWKIVKKYAEDARID 234 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T HTLRHSFATHLL NG DLRS+Q +LGH +STTQIYT+V + E+Y +T Sbjct: 235 KEITPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHVTKGR----LKEVYART 290 Query: 318 HP 319 HP Sbjct: 291 HP 292 >gi|299769077|ref|YP_003731103.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1] gi|298699165|gb|ADI89730.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1] Length = 310 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 100/309 (32%), Positives = 167/309 (54%), Gaps = 30/309 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL+ +I+ S+ T+ +YE D + FL F + +R + +++R ++++R Sbjct: 15 WLKERKIQ-NQSEHTITAYERDVKSFLEFCELKQID------LRNIEASDLREYLAQRVE 67 Query: 81 Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q ++ S++R L+ I+ F+K+ ++ K E N + LK+ PR L + V Sbjct: 68 QDQLSSSSMQRHLTSIRQFMKWAEQGKYL-EINPTDDFKLKRQ---PRPLPGMIDIETV- 122 Query: 140 NVLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 N +L S K ID R+ A+L LLY GLR++E LT ++I ++ +RI GKG+ Sbjct: 123 NQILDQSMPEKPIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGN 182 Query: 196 KIRIVPLLPSVRKAILEYYDLCP-----FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 K RIVP ++++L + + FD N + F RG L P ++ ++ Sbjct: 183 KTRIVPFGKKAKESLLNWLKIYKIWKGHFDQNAFV----FISQRGGALTPRQIEKRVKLQ 238 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 + G+ + H LRH FA+H+LS+ GDLRS+Q +LGH LSTTQIYT+++ D + Sbjct: 239 AQRAGVNVDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDF----DHL 294 Query: 311 MEIYDQTHP 319 ++YD+ HP Sbjct: 295 AQVYDRAHP 303 >gi|298208960|ref|YP_003717139.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559] gi|83848887|gb|EAP86756.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559] Length = 298 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 102/311 (32%), Positives = 167/311 (53%), Gaps = 27/311 (8%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 LK+ Q++L+ IERGLS +++SY D + + FL EK ++T S +I A Sbjct: 7 LKDYQHYLK---IERGLSLNSIKSYSYDVEKLMKFL-----EKNDLKT----SPLKIDAN 54 Query: 75 ISKR----RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 I+K + + +RS R +SG+KSF YL + + N +L +S + R L Sbjct: 55 ITKAFVYDVAKHMNERSQARLISGLKSFFNYL----VFEDYRETNPVDLIESPRIGRKLP 110 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 + +L +DN++ H +K RN A++ LY CGLR+SE ++L ++ ++ +++ Sbjct: 111 DTLSLEEIDNLIAHID-LSKPEGERNRAMIDTLYSCGLRVSELITLNLSDLFFEEGFIKV 169 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 GKG+K R VP+ +K I Y D+ + LF RG+ L + ++ Sbjct: 170 TGKGNKQRFVPIAEHTQKLISIYKTEIRNHQDIKKGHEDTLFLNRRGRGLTRAMIFTIVK 229 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 L GL + + HT RHSFATHLL NG DLR+IQ +LGH ++TT+IY +++ + Sbjct: 230 NLSEKCGLQKTISPHTFRHSFATHLLENGADLRAIQQMLGHESITTTEIYMHLDQTH--- 286 Query: 309 WMMEIYDQTHP 319 + ++ +Q HP Sbjct: 287 -LRDVVNQFHP 296 >gi|110639086|ref|YP_679295.1| site-specific recombinase [Cytophaga hutchinsonii ATCC 33406] gi|110281767|gb|ABG59953.1| site-specific recombinase [Cytophaga hutchinsonii ATCC 33406] Length = 299 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 99/297 (33%), Positives = 154/297 (51%), Gaps = 15/297 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L++ER LS ++++YE D +F+ FL TE + Q+ I+ F+ + Sbjct: 14 LKLERSLSGNSVEAYEHDVIKFMQFLEL-TEPSVGPL---QVKGKHIQLFLEYITELGMS 69 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S R LSGIKSF ++L +I E + +L S L R L + + ++ +LL Sbjct: 70 AYSQARILSGIKSFFRFLLMEEIRDE----DPSSLIDSPKLGRKLPDTLSFPEIEQILLA 125 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 T RN A+L LY CGLR+SE L N+ D +++ GKG+K R+VP+ Sbjct: 126 IDLSTPE-GMRNRAMLETLYSCGLRVSELTDLKISNLFFDDGFVKVLGKGNKERLVPIGR 184 Query: 205 SVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 RK I Y + C D+ + +F RG L+ + I+ L +GL + + Sbjct: 185 DARKYIGMYRNEVRCHLDIVKGAENYVFLNRRGNKLSRVMVFTIIKNLAVKIGLKKTVSP 244 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HT RHSFATHL+ G DLR++Q +LGH ++TT+IYT+++ D++ +I HP Sbjct: 245 HTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTHLDR----DYLQQIIKDFHP 297 >gi|74318396|ref|YP_316136.1| tyrosine recombinase XerD [Thiobacillus denitrificans ATCC 25259] gi|74057891|gb|AAZ98331.1| tyrosine recombinase XerD [Thiobacillus denitrificans ATCC 25259] Length = 296 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 95/297 (31%), Positives = 150/297 (50%), Gaps = 15/297 (5%) Query: 24 NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83 +L +E GL++LTL +Y D R F +L +K +++ ++ ++ A++ R + Sbjct: 12 HLWLEDGLAELTLAAYRRDLRSFAGWL-----DKTRARSLDAVAPGDVEAYLGWRFAHHV 66 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 G RS R S +K F +YL + + LN+ K +LP +L+E T V+ +L Sbjct: 67 GPRSAARYTSALKRFYRYLLRENLIAADPTLNLDRPKLPRALPASLSE----TDVERLLE 122 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 +T R+ A+L LY GLR+SE + L + D LR+ GKG+K R+VPL Sbjct: 123 RADSDTPQ-GLRDRAMLETLYATGLRVSELVGLKLNALNLDDGVLRVTGKGNKDRLVPLG 181 Query: 204 PSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 + + Y L + +F RG + F I++ G+ + Sbjct: 182 EEAVRRLRHYLAEARSQLLRRQVSDAVFVTPRGAAMTRQAFWYLIKRRAAAAGVTRQLSP 241 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V + M ++ HP Sbjct: 242 HTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARER----MKRLHAAHHP 294 >gi|85711580|ref|ZP_01042638.1| Site-specific recombinase XerC [Idiomarina baltica OS145] gi|85694732|gb|EAQ32672.1| Site-specific recombinase XerC [Idiomarina baltica OS145] Length = 302 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 95/309 (30%), Positives = 161/309 (52%), Gaps = 17/309 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WLQ LE ERGL++LT+++Y Q L + ++ ++ QL+ + + R Sbjct: 10 WLQQLEGERGLAQLTIKNY-----QRLTGIDIEQLDRQGVEHAHQLTRSIFERLLVGWRR 64 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 +G+RS+ LS ++F++Y+ + + + ++ K LP+ L+ VD+ Sbjct: 65 DGLGERSIALKLSAWRTFVQYMLDYQHLNDDPLSGLKAPKIPKRLPKNLD-------VDS 117 Query: 141 VLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + A R+SA++ LLY GLR++E +SL +I LR+ GKG K RI Sbjct: 118 ISHLLELPLDDELAIRDSAMMELLYSSGLRLAELVSLDMDSIDLRYGQLRVVGKGSKTRI 177 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 VP+ KAI + + L + ++ LF R + ++ Q+ + + G+ + Sbjct: 178 VPVGKIAIKAIQRWLKVRANWLAMRPEVALFISQRNQRISQRTVQQRLNFWGKQQGVVGN 237 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHSFA+H+L + GDLR++Q +LGH LSTTQ+YT+++ K + E+YD HP Sbjct: 238 LHPHKLRHSFASHMLESSGDLRAVQELLGHANLSTTQVYTHLDFKR----LAEVYDSAHP 293 Query: 320 SITQKDKKN 328 T+ K + Sbjct: 294 RATKGKKSS 302 >gi|117921769|ref|YP_870961.1| tyrosine recombinase XerD [Shewanella sp. ANA-3] gi|117614101|gb|ABK49555.1| tyrosine recombinase XerD [Shewanella sp. ANA-3] Length = 300 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 99/300 (33%), Positives = 156/300 (52%), Gaps = 16/300 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +L +GLS TL +Y D R F + ++ ++ I ++ ++RA+++ R Sbjct: 14 FLDDLWSSKGLSDNTLSAYRTDLRHFDRY-----QQGQGLRLI-EVGQADVRAYLAYRVE 67 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q+ S R LS ++ F YL + K + + + K S LP +L+E Q VD Sbjct: 68 QQFARTSSARLLSSLRRFYTYLLQTKQIAGDPMALIESPKLSRQLPDSLSESQ----VDR 123 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 +L + + ++ R+ A+L LLY GLR+SE + LT + + Q +RI GKG K R+V Sbjct: 124 LLAEPNVDDP-VECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLV 182 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ + Y ++L NIQ + F R + + F I+ G+ Sbjct: 183 PMGELAITEVERYLSFARYELLGNIQSDVVFPSKRAQMMTRQTFWHRIKLYASRAGIETE 242 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + E++ Q HP Sbjct: 243 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARAR----LQELHQQHHP 298 >gi|330807709|ref|YP_004352171.1| Site-specific tyrosine recombinase XerD [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375817|gb|AEA67167.1| Site-specific tyrosine recombinase XerD [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 298 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 101/309 (32%), Positives = 154/309 (49%), Gaps = 32/309 (10%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISKR 78 +L L +E+GLS T +Y D +F + E + I R+L I ++ R Sbjct: 11 QFLDALWLEKGLSDNTRDAYRSD---LALFNGWLQENHLELINAGREL----ILDHLAWR 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q RS R LSG++ F +YL + K+ L + + LP++L+E Sbjct: 64 LEQNYKPRSTARFLSGLRGFYRYLLREKLIAVDPTLRVEMPQLGRPLPKSLSEADV---- 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL ++ I R+ A+L +LY CGLR++E +SLT + + Q LR+ GKG K R Sbjct: 120 -EALLAAPDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKER 178 Query: 199 IVPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 +VP+ +R A E P D+ LF +RG+ + F I+ Sbjct: 179 LVPMGEEAIVWVERYMRDARHELLGGRPSDV-------LFPSLRGEQMTRQTFWHRIKHQ 231 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 + G+ S + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + Sbjct: 232 AKVAGINKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----L 287 Query: 311 MEIYDQTHP 319 +++ + HP Sbjct: 288 QDLHAKHHP 296 >gi|289435303|ref|YP_003465175.1| integrase/recombinase XerD [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171547|emb|CBH28093.1| integrase/recombinase XerD [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 297 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 94/308 (30%), Positives = 161/308 (52%), Gaps = 27/308 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L L +E+GLS T+++YE D F+ ++ T +T L ++I F++ R Sbjct: 7 DFLHFLIVEKGLSANTIKAYERDLHYFVSYIN--TARPLT--DPNTLERSDIVGFMAFAR 62 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + RS+ R ++ ++SF YL + ++ + K++ LP+ LN +D Sbjct: 63 KEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLN-------LD 115 Query: 140 NV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 +V LL +S + + R+ A++ +LY GLR++E + L ++ ++ GKGDK Sbjct: 116 DVELLLSSSDTSTPLGLRDQAMMEILYATGLRVTELVQLKMDDLHLQMGFIQTIGKGDKE 175 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI------RGKPLNPGVFQRYIRQLR 251 RI+PL + + +Y + + ++ P +R G+ L F + ++ + Sbjct: 176 RIIPLGKTATTVLEQYLE----EARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIA 231 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 + G+ T HTLRHSFATHLL NG DLRS+Q +LGH +STTQIYT+V + Sbjct: 232 KESGIEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLR----LK 287 Query: 312 EIYDQTHP 319 ++Y Q HP Sbjct: 288 DVYKQFHP 295 >gi|170017033|ref|YP_001727952.1| site-specific recombinase XerD [Leuconostoc citreum KM20] gi|169803890|gb|ACA82508.1| Site-specific recombinase XerD [Leuconostoc citreum KM20] Length = 298 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 91/301 (30%), Positives = 163/301 (54%), Gaps = 16/301 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +++ + IERGLS+ T+ SY D QF ++L+ +E + + ++ + + +++++ R Sbjct: 11 DYIHYIRIERGLSENTITSYRQDLNQFGMYLS---QEHLLLG---EVDHIVVLSWLNRLR 64 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 T + S+ R ++ ++ F YL + + T + + +++ KK+ LP L+ ++ TL+ Sbjct: 65 TNGKSNSSVIRMVTSLRRFFGYLTQENMITHNPMSHVKPPKKAAHLPAVLSFEEIDTLLG 124 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + T + RN +L ++Y GLR+SE ++L ++ ++ GKGDK RI Sbjct: 125 VPVPSTP-----LGMRNRTLLEVMYATGLRVSELVNLKMSDLHIQLGLIQTLGKGDKERI 179 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +P+ + Y+ L + P +F RG L + I++L G+ Sbjct: 180 IPIGEVAVDWLERYFAGARLTLLKAQESPYVFVNDRGGQLTRQGVWKIIKKLVLEAGITK 239 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + HTLRHSFATH+L NG DLR +Q +LGH +STTQIYT+++ K + E+YD+ H Sbjct: 240 DVSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISKKR----LSEVYDEYH 295 Query: 319 P 319 P Sbjct: 296 P 296 >gi|163788788|ref|ZP_02183233.1| 3-dehydroquinate dehydratase [Flavobacteriales bacterium ALC-1] gi|159876025|gb|EDP70084.1| 3-dehydroquinate dehydratase [Flavobacteriales bacterium ALC-1] Length = 302 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 95/297 (31%), Positives = 160/297 (53%), Gaps = 12/297 (4%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L+IERGLSK ++++Y D ++ +++L EE I + ++ FI ++ + Sbjct: 14 LQIERGLSKNSIENYCYDIKKLIVYL----EENALIVSPITTDNAIVKQFIYTI-SKSLN 68 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNM-RNLKKSNSLPRALNEKQALTLVDNVLL 143 RS R +SG+++F YL E+N L++ + + LP L+ LV+N+ L Sbjct: 69 ARSQARLISGLRNFFDYLIFENYR-ETNPLDLIESPRIGRKLPDTLSIDDIDNLVNNIDL 127 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 + + RN AI+ LY CGLR+SE + L ++ D+ +++ GKGDK R VP+ Sbjct: 128 SYQYNGVNLGERNRAIIETLYSCGLRVSELIELKISDLFFDEGFIKVTGKGDKQRFVPIG 187 Query: 204 PSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 + + I + + ++ N + LF +GK L + I++L G+ + + Sbjct: 188 LTTQNYIAIWIGIRNHIEVQPNSKDNLFLNYKGKKLTRAMIFTIIKKLVEKSGITKNVSP 247 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HT RHSFATHLL NG DLR+IQ +LGH ++TT+IY +V+ + D + ++ HP Sbjct: 248 HTFRHSFATHLLENGADLRAIQMMLGHESITTTEIYMHVDRSHLSD----VLNKFHP 300 >gi|29840494|ref|NP_829600.1| site-specific tyrosine recombinase XerD [Chlamydophila caviae GPIC] gi|29834843|gb|AAP05478.1| integrase/recombinase XerD [Chlamydophila caviae GPIC] Length = 298 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 101/308 (32%), Positives = 153/308 (49%), Gaps = 31/308 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + ++ L ++RGL + ++ +Y D FL A + E+I S + F+ + Sbjct: 12 EQFILFLSVDRGLCRNSISAYCQDITLFLKINAITSTEEI--------SQDSVYLFVQQL 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 +K + +L R L +K F ++LK+ K+ ++ + K LP L K+ Sbjct: 64 HKRKEAESTLARRLIALKVFFRFLKEAKLLDHPPLIEHPKIWKR--LPSVLTPKEV---- 117 Query: 139 DNVLLHTSHETK---WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 + LL + ++K I AR++AIL LY G+R+SE L ++ DD LR+ GKG Sbjct: 118 -DALLSAAQQSKTSPIISARDTAILLTLYSTGIRVSELCDLCISDVSDD--FLRVTGKGS 174 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLR 251 K R+VPL KAI Y LCPF P LF +RG L R I Sbjct: 175 KTRLVPLGKVACKAIDAY--LCPFRETFQKLHPEEHHLFLSVRGHRLERSCVWRRIHYYA 232 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 + + + H+LRH+FATHLL N DLR IQ +LGH R+++T+IYT+V D +M Sbjct: 233 KQVTHK-RVSPHSLRHAFATHLLDNKADLRIIQEMLGHARIASTEIYTHV----AADTLM 287 Query: 312 EIYDQTHP 319 E + HP Sbjct: 288 ENFLSYHP 295 >gi|296110353|ref|YP_003620734.1| site-specific recombinase, phage integrase family [Leuconostoc kimchii IMSNU 11154] gi|295831884|gb|ADG39765.1| site-specific recombinase, phage integrase family [Leuconostoc kimchii IMSNU 11154] Length = 304 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 89/289 (30%), Positives = 144/289 (49%), Gaps = 11/289 (3%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 +E+Q + L ER S LTL++Y D +F+ FLA + R + ++R ++ Sbjct: 4 REQQLYRIYLVSERQYSPLTLKAYLSDIDEFINFLA----QNGGFTNFRAVQPLDVRVYL 59 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 + + + S+ R +S ++ F +++ + ++ N+ K N LP E + Sbjct: 60 NDLYERHLARTSISRKISSLRMFYQFMVANQFVIDNPFENIALRKHQNHLPEFFYETEMA 119 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 TL D + + W RN+A+L LY G R++E +LT + Q + I GKG+ Sbjct: 120 TLFDTA--YNQEDKLW--QRNAALLEFLYATGARVTEIATLTIAQLDFSQRLVLIHGKGN 175 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRR 252 K R VP +A+++Y DL P +F RG+P+ + QL + Sbjct: 176 KDRYVPFGHFAAQALMQYLSETRADLTAKQPAPHQVVFVNHRGEPITAAGITYILNQLMQ 235 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 L H LRH+FATHLL+NG D+R++Q +LGH LSTTQ+YT+V Sbjct: 236 RSALTGKIHPHMLRHTFATHLLNNGADMRTVQELLGHVNLSTTQMYTHV 284 >gi|189347316|ref|YP_001943845.1| tyrosine recombinase XerD [Chlorobium limicola DSM 245] gi|189341463|gb|ACD90866.1| tyrosine recombinase XerD [Chlorobium limicola DSM 245] Length = 306 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 94/302 (31%), Positives = 161/302 (53%), Gaps = 13/302 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +N+L +L +ER S T +SY D +++L+F+ E K I + +IR FIS+ Sbjct: 15 ENFLNHLSVERNFSVNTRESYRNDLKRYLLFMQ--DENK----AIGAVETADIRKFISEL 68 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + +L R++S I+S K+L + + ++ K + +LP L+ + ++L+ Sbjct: 69 HATGLEASTLGRNISAIRSLHKFLLIERTLETNPAETIQQPKLAKNLPDVLSLSEVMSLL 128 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + L + K++ R+ AIL LY G+R+SE +L Q++ D +RI GKG K R Sbjct: 129 E-APLQQNPPGKFL-LRDKAILEFLYAAGVRVSELTALQQQHLYFDAGFVRILGKGSKER 186 Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ + +AI +Y + + + LF RGK L+ +R+ G+ Sbjct: 187 LVPVGNAAIEAITQYQNQLRIGMVTKESEDCLFLNARGKKLSRMAVYLMVREYAALAGIR 246 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + + HTLRH+FATHLL G DLR++Q +LGH + TQIYT+++ ++ E++ Sbjct: 247 KNISPHTLRHTFATHLLEGGADLRAVQEMLGHSSILATQIYTHIDR----SFIREVHKTF 302 Query: 318 HP 319 HP Sbjct: 303 HP 304 >gi|322421383|ref|YP_004200606.1| tyrosine recombinase XerC [Geobacter sp. M18] gi|320127770|gb|ADW15330.1| tyrosine recombinase XerC [Geobacter sp. M18] Length = 292 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 104/308 (33%), Positives = 145/308 (47%), Gaps = 32/308 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + LE ER +S TL +Y D QF L+ + E Q+ + IR ++++ Sbjct: 6 EQFCSYLETERNVSPHTLAAYRSDLEQFASSLSRHGEP-----LPEQVDHLAIRRYLAQL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S+ R LS I++ ++L + ++ + KK LP LN Q LV Sbjct: 61 HKGH-AKSSIGRKLSAIRALFRFLLREGRLEKNPAELVSTPKKEKRLPFHLNIDQVSALV 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD---DQSTLRIQGKGD 195 + + R+ A+L LY CG+R+SE LT N+ D Q+ R+ GKG Sbjct: 120 E-----APAGAAGLPLRDRAVLETLYSCGIRVSE---LTGMNVGDLDLHQALARVMGKGG 171 Query: 196 KIRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 K RIVP+ RKA+ Y D P D PL RG L R + + Sbjct: 172 KERIVPVGSFARKALSAYLEERGDPPPCD-------PLILNSRGGRLTRRSVARIVDRHM 224 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 + + HTLRH+FATHLL G DLR IQ +LGH LSTTQ YT V+ D +M Sbjct: 225 LMIAAMRKVSPHTLRHTFATHLLEGGADLRCIQELLGHASLSTTQKYTQVSI----DRLM 280 Query: 312 EIYDQTHP 319 E+YDQ HP Sbjct: 281 EVYDQAHP 288 >gi|149377067|ref|ZP_01894817.1| integrase/recombinase XerD [Marinobacter algicola DG893] gi|149358603|gb|EDM47075.1| integrase/recombinase XerD [Marinobacter algicola DG893] Length = 310 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 95/294 (32%), Positives = 152/294 (51%), Gaps = 14/294 (4%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 +E GL + T Q+Y D L LA + +E+ + ++ T++ ++IS+ + Sbjct: 28 LEDGLGEKTRQAYRSD----LERLAAWLQEQPGKPLLTEVRRTDLLSWISRGLSDGFKTS 83 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 + R LSG++ F +YL + + E L + + + LP +L+E V+N+L Sbjct: 84 TAARRLSGLRRFFRYLLREGVIAEDPTLRIDSPRLPRRLPDSLSEDD----VENLLSEPD 139 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 E I+ R+ A++ +LYGCGLR+SE ++LT + Q +RI GKG+K R+VPL Sbjct: 140 PEVP-IELRDKAMMEILYGCGLRVSELVALTVDEVNLRQGVVRIVGKGNKERLVPLGEEA 198 Query: 207 RKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 ++ Y +L LF G R + F I+ G+ + HTL Sbjct: 199 VDWLVRYMREGRGELLKGRASNALFPGNRPTAMTRQTFWHRIKHYALRAGIHKHLSPHTL 258 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 RH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + + ++ HP Sbjct: 259 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARQR----LQSLHQAHHP 308 >gi|189346148|ref|YP_001942677.1| integrase family protein [Chlorobium limicola DSM 245] gi|189340295|gb|ACD89698.1| integrase family protein [Chlorobium limicola DSM 245] Length = 337 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 103/339 (30%), Positives = 165/339 (48%), Gaps = 38/339 (11%) Query: 2 EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61 +G PEI + +L L+ ++ +S TL +Y D QF IF+A + I Sbjct: 14 DGRRYPEI---------ERFLDYLKSQKNVSSHTLTAYRNDLDQFSIFIA----SHLGIG 60 Query: 62 TIR-----QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116 +R QL+ ++R ++ + +S+ R L+ +KSF +YL+ I S + + Sbjct: 61 DMRNFLPEQLAVVDVRLYMGYLLKNGLQPKSIARKLATLKSFYRYLQHIGIIRTSVLAYV 120 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA----------RNSAILYLLYGC 166 K ++P L E+Q L VL +S + A R+ A+L +LY C Sbjct: 121 TTPKYPRTVPGFLTEQQTEKLFGEVLSGSSADASRSGAQDIQEQFELERDRALLEVLYSC 180 Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL------CPFD 220 GLRISE L N+ + ++I GKG+K RIVPL +A+ +Y+++ Sbjct: 181 GLRISELTGLEMHNLSLENGYVKITGKGNKQRIVPLGSCAVEALKKYFEVRRNFFRIFLK 240 Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280 + +F +GK + P + QR R+ + H LRHSFATHLL++G DL Sbjct: 241 GDAGALAHVFVTKKGKKIYPMLVQRITRKYLTPVTEQKERNPHILRHSFATHLLNSGADL 300 Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 +S+ +LGH L+TT+IYT+V + E+Y + HP Sbjct: 301 KSVSEMLGHSSLTTTEIYTHVTFSR----LSEVYRKAHP 335 >gi|330997435|ref|ZP_08321286.1| tyrosine recombinase XerD [Paraprevotella xylaniphila YIT 11841] gi|329570809|gb|EGG52525.1| tyrosine recombinase XerD [Paraprevotella xylaniphila YIT 11841] Length = 317 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 92/287 (32%), Positives = 154/287 (53%), Gaps = 15/287 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + Q L++ERGLS+ TL +Y D R+ L F+++E++ R +S ++ F+++ Sbjct: 21 RRYYQYLKLERGLSENTLDAYTEDLRKLL---DFFSDEELDF---RAVSLDDLHQFMAEL 74 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 I RS+ R LSGI+SF ++L K + + + K LP L + ++ Sbjct: 75 ADVGISPRSMARILSGIRSFYRFLYVEKEIEQDPTELLESPKIGRRLPEVLTVAEIDAMI 134 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + + L RN AIL +LY CGLR+SE L ++ ++ +R++GKG+K R Sbjct: 135 EGIDLSQPE-----GQRNRAILEMLYSCGLRVSELCGLRISDLFLEEGFIRVKGKGEKER 189 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI---RGKPLNPGVFQRYIRQLRRYLG 255 +VP+ LE + LC + + F + RG L+ ++++L G Sbjct: 190 LVPISGRAVHE-LENWFLCRNLIRIKPGHEDFVFLSLRRGTALSRITIFYWVKELAVAAG 248 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + + + HT RHSFATHLL G +LR IQ++LGH +STT+IYT+++ Sbjct: 249 IQKTISPHTFRHSFATHLLEGGANLRVIQAMLGHESISTTEIYTHID 295 >gi|284044544|ref|YP_003394884.1| tyrosine recombinase XerD [Conexibacter woesei DSM 14684] gi|283948765|gb|ADB51509.1| tyrosine recombinase XerD [Conexibacter woesei DSM 14684] Length = 320 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 89/306 (29%), Positives = 157/306 (51%), Gaps = 21/306 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +++ LE+ERGLS+ TL++Y D Q+ +L ++ + ++ + ++ AF+ Sbjct: 21 DFIAYLELERGLSRNTLEAYRSDLLQYGAYLDRAGKDALRVE------HGDLAAFVGALA 74 Query: 80 TQKIG-----DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 G +++R ++ ++SF ++L++ +I ++ + LP+ L+ + Sbjct: 75 AGGDGRAPAAATTVQRKVACLRSFYRHLRREEILDRDPTAELKGPPRGKKLPKVLSRDEV 134 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 LL T R+ A+L L+Y CGLR SEA+ + + D LR GKG Sbjct: 135 -----QHLLSQPRGTGPAALRDRALLELMYACGLRASEAVDMQLDELDVDDGILRANGKG 189 Query: 195 DKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 +K R+VP+ A+ Y P + L + +F RG L + +++ R Sbjct: 190 NKERLVPIGSKALDALRHYLTRGRPQMVGLREEKRVFVNQRGHGLTRQGLYKIVQRHART 249 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 GL + HTLRH+FATHLL+ G DLRS+Q +LGH ++TTQIYT+++++ + ++ Sbjct: 250 AGLGDKMSPHTLRHTFATHLLAGGCDLRSLQEMLGHADIATTQIYTHLSAER----LRDV 305 Query: 314 YDQTHP 319 Y HP Sbjct: 306 YFDAHP 311 >gi|148264429|ref|YP_001231135.1| tyrosine recombinase XerD [Geobacter uraniireducens Rf4] gi|146397929|gb|ABQ26562.1| tyrosine recombinase XerD subunit [Geobacter uraniireducens Rf4] Length = 295 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 99/302 (32%), Positives = 159/302 (52%), Gaps = 19/302 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L +E+GL+K TL++Y D +L FLA ++ + + L E +++ + Sbjct: 8 FLNYLLVEKGLTKNTLEAYSRDLSVYLDFLA--ERKRTNPENVTALDVVE---HVTRLKD 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS R+LS I+ F ++L + + + K N LP L+ ++ +L Sbjct: 63 SGLAPRSRARALSAIRMFHRFLLVENYSVSNPTAIIETPKTVNRLPEVLSGREVESL--- 119 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 L T+ + R+ A+L +LY GLR+SE +SL +++ D L GKG+K R+V Sbjct: 120 --LATAKGDGTFEVRDRAMLEVLYATGLRVSELVSLKLRDVNIDAGYLLTMGKGEKERLV 177 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 P+ S R AI EY L + L+ + LF G ++ F I++ G+ Sbjct: 178 PMGESARTAIGEY--LAGIRILLDRKGDNEYLFLSRLGGKMSRQAFWNIIKKRSGAAGIR 235 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + + HTLRHSFATHLL NG DLRS+Q +LGH LS+TQIYT+V + + +++ + Sbjct: 236 KNISPHTLRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVTRER----LKKLHQEF 291 Query: 318 HP 319 HP Sbjct: 292 HP 293 >gi|109900015|ref|YP_663270.1| tyrosine recombinase XerD [Pseudoalteromonas atlantica T6c] gi|109702296|gb|ABG42216.1| tyrosine recombinase XerD [Pseudoalteromonas atlantica T6c] Length = 301 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 95/301 (31%), Positives = 153/301 (50%), Gaps = 13/301 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + +E+GLS+ TL +Y D +F FL + ++ + + +I ++++R Sbjct: 12 EQFLDTIWLEKGLSENTLDAYRSDLTKFSDFL----RAQSSVVNLLDIQTEDINQYMAER 67 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + +RS R LS ++ F Y+ + + + M+N K S LP+ L+E+Q V Sbjct: 68 FDNGLSERSSARCLSSLRRFSGYMLAHGLREDDPVSRMQNPKLSKPLPKTLSEQQ----V 123 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D+ LL+ I R+ A+L +LY GLR++E ++L + Q +R+ GKG+K R Sbjct: 124 DD-LLNAPQTDDPIQLRDKAMLEVLYATGLRVTELVTLRVGQLSISQGVVRVTGKGNKER 182 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +VPL + Y L N LF RG + F I+ + Sbjct: 183 LVPLGEEALDWLTTYMKEARGALLRNESDVLFPSNRGTIMTRQTFWHRIKFHATQANITS 242 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + + E+ H Sbjct: 243 DLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATAR----LQELVAAHH 298 Query: 319 P 319 P Sbjct: 299 P 299 >gi|78042632|ref|YP_360783.1| tyrosine recombinase XerD [Carboxydothermus hydrogenoformans Z-2901] gi|77994747|gb|ABB13646.1| tyrosine recombinase XerD [Carboxydothermus hydrogenoformans Z-2901] Length = 287 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 98/299 (32%), Positives = 161/299 (53%), Gaps = 18/299 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 ++ L +E+G S TL SY D +F+ FL EK I I S +I+ ++ Sbjct: 5 FIDYLLLEKGFSLNTLLSYRRDLEKFVSFL-----EKRNISIIDATS-KDIKLYLQDL-A 57 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 +K+ S+ R+L+ I+SF KYL + KI E+ L++ K LP L+ ++ + Sbjct: 58 RKLKPASVARNLAAIRSFYKYLLREKIVGENPALDVDGPKLGLKLPEILSYEEI-----D 112 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 +LL + W R+ A+L LLY GLR+SE ++L N+ D+ ++I GKG K+RIV Sbjct: 113 LLLKAPDLSTWEGVRDRAMLELLYATGLRVSELVNLELPNLYLDERYVKILGKGAKMRIV 172 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 P + +Y L + +++L + R +G F + +++ + G+ + Sbjct: 173 PFGEVAAHYLNQYLALRAKRKSNSLKLFITR--KGSGFTRQGFWKMLKRYGQKAGIVKNL 230 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T H +RHSFATHLL NG DLR +Q +LGH + TTQIYT++ ++ + E++ + HP Sbjct: 231 TPHLIRHSFATHLLENGADLRIVQELLGHSFIETTQIYTHLTTRK----LREVFRKAHP 285 >gi|330962350|gb|EGH62610.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. maculicola str. ES4326] Length = 290 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 97/303 (32%), Positives = 149/303 (49%), Gaps = 21/303 (6%) Query: 24 NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83 +L ER +S TL++Y D + L F +K + + L +R+F +++ Q Sbjct: 2 HLRSERQVSPHTLEAYRRDLGKVLAFC-----QKAGLSSWTNLDIQHLRSFTARQHQQGQ 56 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 RSL R LS ++ F KYL + I + K LP+ L+ +A L+D + Sbjct: 57 SSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRAAQLLDGAV- 115 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 E ++ R+ AIL LLY GLR+SE L + +++ GKG K R++P+ Sbjct: 116 ----EEDFLAQRDQAILELLYSSGLRLSELTGLNLDQLDLRAGLVQVLGKGSKTRVLPVG 171 Query: 204 PSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPLSTT 261 RKA+ + P N Q +F GK L P Q ++ R LG L Sbjct: 172 SKARKALESW---LPLRALTNPQDDAVFVSQHGKRLGPRAVQNRVKAAGERELGQNLHP- 227 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321 H LRHSFA+HLL + DLR++Q +LGH + TTQIYT+++ ++ + +YD HP Sbjct: 228 -HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATVYDSAHPRA 282 Query: 322 TQK 324 +K Sbjct: 283 KRK 285 >gi|326773392|ref|ZP_08232675.1| tyrosine recombinase XerD [Actinomyces viscosus C505] gi|326636622|gb|EGE37525.1| tyrosine recombinase XerD [Actinomyces viscosus C505] Length = 311 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 99/315 (31%), Positives = 155/315 (49%), Gaps = 27/315 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L +L +ERGLS TL +YE D ++L +L I + +S ++ F+ Sbjct: 6 RGYLAHLRVERGLSPHTLSAYERDLGRYLRYL-----RSAGISAPQDVSRNDVAGFLEVL 60 Query: 79 RTQKIGDRSLK-----RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 RT G R L R+++ ++ + K+L T+E +R + LP+AL + Sbjct: 61 RTGSDGARPLASSSASRTVTAVRGWHKFLLAEGTTSEDPSATVRPPQPGRRLPKALGVDE 120 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L++ + S + R+ A+L +LY G RISEA+ L ++ D LR+ GK Sbjct: 121 VCRLLEAAGVDDSP----VSLRDRALLEVLYATGARISEAVGLVVDDLDTDSRLLRLFGK 176 Query: 194 GDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLR 251 G K R+VP+ +A+ Y P +P +F G+PL+ ++Q Sbjct: 177 GRKERVVPMGAYAWEALDAYLVRGRPVLAEKGRGVPQVFLNTLGRPLSRQSAWAVLQQAA 236 Query: 252 RYLGLPLSTTA-------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 GL + A HTLRHSFATHLL+ G D+R +Q +LGH ++TTQIYT V Sbjct: 237 ERAGLIGTDGADERRISPHTLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTKVTV- 295 Query: 305 NGGDWMMEIYDQTHP 319 D + E+Y +HP Sbjct: 296 ---DHLREVYATSHP 307 >gi|6648971|gb|AAF21314.1| site-specific recombinase [Staphylococcus aureus] Length = 293 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 102/303 (33%), Positives = 163/303 (53%), Gaps = 19/303 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTI-RQLSYTEIRAFIS 76 + +L+ ++IE+GLS T+ +Y D +++ ++ TE I+ I I RQL + I Sbjct: 6 EEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYM---TEHHISHIDFIDRQLIQECLGHLID 62 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + ++ K S+ R +S I+SF ++ + K + + + + K LP LN + L Sbjct: 63 QGQSAK----SIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLA 118 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L L T K R+ +L LLY G+R+SE + L +N+ +R+ GKGDK Sbjct: 119 L-----LETPDLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDK 173 Query: 197 IRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RIVPL +V + + Y + + P L + LF + GKPL+ + I+Q Sbjct: 174 ERIVPLGDAVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKAN 233 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + T HTLRHSFATHLL NG DLR++Q +LGH +STTQ+YT+V+ + ++Y+ Sbjct: 234 IKKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYN 289 Query: 316 QTH 318 Q H Sbjct: 290 QFH 292 >gi|325971096|ref|YP_004247287.1| tyrosine recombinase xerC [Spirochaeta sp. Buddy] gi|324026334|gb|ADY13093.1| Tyrosine recombinase xerC [Spirochaeta sp. Buddy] Length = 300 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 103/315 (32%), Positives = 168/315 (53%), Gaps = 32/315 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-EKITIQTIRQLSYTEIRAFISK 77 +++ L ++R LS+ T Y + +FLA ++ E IT I +Y I+ Sbjct: 12 EDYTDYLAMQRRLSEATQSVY---AHELALFLAAGSDYETITASLIE--AYIVIQV---- 62 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 +T+ + +RS+ + LS ++SF +L+ KI ++ +L ++ ++ SLP+ + Q Sbjct: 63 -QTRHLSERSVAKLLSALRSFFSFLQMSKIREDNPVLLIQRGRQKQSLPQVASVAQV--- 118 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-LRIQGKGDK 196 + LL + + + R+ + L+Y CGLRISEA +L + D Q T +R+ GK K Sbjct: 119 --DALLESIDTSDLLGFRDRTLFELIYSCGLRISEACTL---QVSDYQKTSIRVVGKRHK 173 Query: 197 IRIVPLLPSVRKAILEYY-DLCPFDLNLNIQL-PLFRGIRGKPLN-PGVFQRYIRQLRRY 253 IRI+P+ R + Y D+ P + + + LF G RG L +++R+I Y Sbjct: 174 IRIIPVGEIARMWVDAYLKDIRPKLIGMRLSTKALFVGRRGHQLTRQAMYKRFIA----Y 229 Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 + L HTLRHSFATHLL G DLRS+Q +LGH + TTQIYT+V++K + + Sbjct: 230 CDVAGLDAKVHTLRHSFATHLLEGGADLRSVQELLGHSDIKTTQIYTHVDTKQ----LQK 285 Query: 313 IYDQTHPSITQKDKK 327 Y+Q H I K+ + Sbjct: 286 AYEQFHAGIHDKEDQ 300 >gi|229916183|ref|YP_002884829.1| tyrosine recombinase XerD [Exiguobacterium sp. AT1b] gi|229467612|gb|ACQ69384.1| tyrosine recombinase XerD [Exiguobacterium sp. AT1b] Length = 295 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 92/301 (30%), Positives = 155/301 (51%), Gaps = 14/301 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++LQ + +E+ +S T Q+Y D Q+ L ++ ++ +++ + I I + Sbjct: 7 ESFLQYMTVEKRMSANTRQAYASDLTQYASTLT-----QLGVEEWNEVTRSHIVKHIEEL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 SL+R++S I+ F +LK +TT L + + K LP ++ + L+ Sbjct: 62 SQAGRASSSLRRAVSSIRMFHHHLKMTGVTTTDPSLYLESPKAEKQLPDTWSQTEVERLL 121 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D+V + + R+ A+L LLYG G+R+SE L L ++ + L+ +GKG++ R Sbjct: 122 DSVPT-----SDPLSLRDRAMLELLYGTGMRVSELLGLDLDDLQFELGYLQCEGKGERAR 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 I+P+ + + Y L LF RG L+ F + I++ + G+ Sbjct: 177 IIPVSSVAQSFVERYIQQARNGLGGRETEALFLNGRGGRLSRQGFWKMIKRRAKLAGIEK 236 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 T H LRHSFATHLL NG DLR+IQ +LGH L+TTQ+YT+VN + ++Y + H Sbjct: 237 EITPHVLRHSFATHLLENGADLRAIQQMLGHADLATTQVYTHVNKSR----LHDVYRKHH 292 Query: 319 P 319 P Sbjct: 293 P 293 >gi|70728483|ref|YP_258232.1| site-specific tyrosine recombinase XerD [Pseudomonas fluorescens Pf-5] gi|68342782|gb|AAY90388.1| tyrosine recombinase XerD [Pseudomonas fluorescens Pf-5] Length = 298 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 99/308 (32%), Positives = 156/308 (50%), Gaps = 32/308 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI-QTIRQLSYTEIRAFISKRR 79 +L L +E+GLS T +Y D +F + E+ + + + R+L I ++ R Sbjct: 12 FLDALWLEKGLSDNTRDAYRSD---LALFNGWLQEQGLELPRAGREL----ILDHLAWRV 64 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q RS R LSG++ F +YL + K+ L + + LP++L+E Sbjct: 65 EQAYKPRSTARFLSGVRGFYRYLLREKLIEIDPTLQIDMPQLGRPLPKSLSEADV----- 119 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 LL ++ I R+ A+L +LY CGLR++E +SLT + + Q LR+ GKG K R+ Sbjct: 120 EALLAAPDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERL 179 Query: 200 VPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 VP+ +R A E P D+ LF +RG+ + F I+ Sbjct: 180 VPMGEEAIVWVERYMRDARAELLGGRPSDV-------LFPSLRGEQMTRQTFWHRIKHQA 232 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 + G+ + + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + Sbjct: 233 KVAGIGKALSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----LQ 288 Query: 312 EIYDQTHP 319 +++ + HP Sbjct: 289 DLHAKHHP 296 >gi|226328247|ref|ZP_03803765.1| hypothetical protein PROPEN_02140 [Proteus penneri ATCC 35198] gi|225202980|gb|EEG85334.1| hypothetical protein PROPEN_02140 [Proteus penneri ATCC 35198] Length = 312 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 96/303 (31%), Positives = 161/303 (53%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L N+ +E+GLS TL SY D + +LA + + +++ T+ ++++F++ R Sbjct: 23 EQFLDNIWLEQGLSANTLSSYRLDLQALGQWLAHHQLDWLSVSTL------DLQSFLATR 76 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S R LS ++ +YL + K+ + + K LP+ L+E+Q V Sbjct: 77 LDEGYKASSAARLLSTMRRLFQYLYREKLRLDDPSALLSTPKLPKRLPKDLSEQQ----V 132 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D+ LL+ + ++ R+ A+L +LY CGLR+SE + L+ +I Q LR+ GKGDK R Sbjct: 133 DD-LLNAPCIDEPLELRDKAMLEVLYACGLRVSELVGLSLSDISLRQGVLRVIGKGDKER 191 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL + +Y P + +F +RG+ + F I+ G+ Sbjct: 192 LVPLGEEAIYWLEQYLQYGRPTLMQGKTDDIVFPSLRGQKMTRQTFWHRIKHYAVIAGID 251 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + ++ Q Sbjct: 252 TEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKVLHQQ 307 Query: 317 THP 319 HP Sbjct: 308 HHP 310 >gi|295706488|ref|YP_003599563.1| tyrosine recombinase XerD [Bacillus megaterium DSM 319] gi|294804147|gb|ADF41213.1| tyrosine recombinase XerD [Bacillus megaterium DSM 319] Length = 297 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 97/306 (31%), Positives = 158/306 (51%), Gaps = 21/306 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q+++ L +ERGL+K T+ SYE D + + A Y E +++ +++ I F+ Sbjct: 6 QDFIHYLVVERGLAKNTIDSYERDLKNY----AQYLEHVEQLKSFNEVTRLHIVNFLKYL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q+ +++ R ++ +SF ++L + K +++ + LP+ LN ++ Sbjct: 62 SDQQKSSKTIARHVASTRSFHQFLLREKAADTDPSVHIDTPQLERKLPKVLNAEEV---- 117 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL---RIQGKGD 195 LL+ + R+ A+L LLY G+R+SE ++L NI D T+ R GKG+ Sbjct: 118 -EALLNVFDTSTPFGIRDKAMLELLYATGIRVSELVNL---NIDDAHLTMGFIRCIGKGN 173 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQLRRY 253 K RIVP+ +AI +Y L + LF G+ L F + +++L Sbjct: 174 KERIVPIGRLATEAIEDYLQHSRSVLTKQKEQDKALFVNHHGRRLTRQGFWKILKKLASE 233 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 + T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V + ++ Sbjct: 234 AKIEKELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKAR----LKDV 289 Query: 314 YDQTHP 319 Y+Q HP Sbjct: 290 YNQFHP 295 >gi|259046718|ref|ZP_05737119.1| integrase/recombinase XerC [Granulicatella adiacens ATCC 49175] gi|259036614|gb|EEW37869.1| integrase/recombinase XerC [Granulicatella adiacens ATCC 49175] Length = 318 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 93/289 (32%), Positives = 150/289 (51%), Gaps = 15/289 (5%) Query: 17 ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 E Q++L +++ER S T+ +YE D + F +L ++ I + +S ++R ++ Sbjct: 5 EMQDFLAYIKVERRYSPETIHAYERDIQHFCDYLT-----EVPITSWNDVSVVDVRIYLG 59 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-PRALNEKQAL 135 + S+ R LS ++SF +L +RK ESN + KK L P E + Sbjct: 60 VLHRENYNRSSISRFLSSLRSFYHFLVERK-AVESNPFASVSYKKGKMLLPEFFYEDEIE 118 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 ++++ + S +D RN A++ +LY G+R+SE +LT + + D S + + GKG Sbjct: 119 KFINSIDGNQS-----LDQRNKALVEVLYATGMRVSELTNLTLEQLDLDNSIILVIGKGS 173 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 K R VP+ R A+ Y + DL +F G PL + + +L + Sbjct: 174 KERYVPIGDFARTALETYLEEGRKDLMAKERKEHFFVFVNHLGDPLTTNGVRYILEKLIQ 233 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 GL L H LRH+FATHLL+NG D+R++Q +LGH LS+TQIYT+V Sbjct: 234 ESGLTLKIHPHMLRHTFATHLLNNGADMRTVQELLGHVSLSSTQIYTHV 282 >gi|313500307|gb|ADR61673.1| XerD [Pseudomonas putida BIRD-1] Length = 298 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 101/309 (32%), Positives = 149/309 (48%), Gaps = 32/309 (10%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKR 78 +L L +E+GLS T SY D +F + E +++ R L I ++ R Sbjct: 11 QFLDALWLEKGLSDNTRVSYRSD---LALFNGWLQEHSVSLPDAGRDL----ILDHLAWR 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q RS R LSG++ F +YL + K+ L + + LP++L+E Sbjct: 64 LDQGYKPRSTARFLSGLRGFFRYLLREKLVAIDPTLQVDMPQLGKPLPKSLSEADV---- 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL + I R+ A+L +LY CGLR++E +SLT + Q LR+ GKG K R Sbjct: 120 -EALLQAPDLGEAIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKER 178 Query: 199 IVPLLPSV--------RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 +VP+ R E + P D+ LF RG+ + F I+ Sbjct: 179 LVPMGEEAVVWLDRYQRDGRAELLNGRPSDV-------LFPSQRGEQMTRQTFWHRIKHH 231 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 R G+ + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + Sbjct: 232 ARVAGIDKPLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKAR----L 287 Query: 311 MEIYDQTHP 319 +++ Q HP Sbjct: 288 QQLHAQHHP 296 >gi|227536514|ref|ZP_03966563.1| integrase/recombinase XerD [Sphingobacterium spiritivorum ATCC 33300] gi|227243591|gb|EEI93606.1| integrase/recombinase XerD [Sphingobacterium spiritivorum ATCC 33300] Length = 297 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 92/310 (29%), Positives = 168/310 (54%), Gaps = 29/310 (9%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 ++++ + L++ERGL+ ++++Y D + ++ T++++T+ +QLS I+ F+ Sbjct: 7 KKDFKRYLQLERGLTSNSIEAYLNDIAKLEVYC---TDQQLTL---KQLSVHNIQEFLVW 60 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 T I S R +SG+K+F YL+ + T++ + +++ + S +P LN ++ L Sbjct: 61 INTFDISPYSQSRLISGLKAFFGYLQLEGLITKNPVELIQSPRLSRKIPVVLNIEEIDQL 120 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 + + L T+ RN AIL +LYGCGLR+SE ++L N+ ++++GKG+K Sbjct: 121 IGALDLSTAD-----GMRNKAILEILYGCGLRVSELVNLRISNLFLHIDFIKVEGKGNKE 175 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI--------RGKPLNPGVFQRYIRQ 249 R++P+ K + Y + + + P+ G RG L+ + I+ Sbjct: 176 RLIPIGQHAIKYLNIYLN------EIRVHQPVKAGFEDYVFLNKRGTSLSRVMIFLIIKD 229 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 L GL + HT RHSFA+HL+ G DLR++Q +LGH ++TT+IYT+++ D+ Sbjct: 230 LAAKTGLQKEISPHTFRHSFASHLVEGGADLRAVQDMLGHESITTTEIYTHIDR----DY 285 Query: 310 MMEIYDQTHP 319 + I Q HP Sbjct: 286 LHAIITQFHP 295 >gi|319646005|ref|ZP_08000235.1| tyrosine recombinase xerC [Bacillus sp. BT1B_CT2] gi|317391755|gb|EFV72552.1| tyrosine recombinase xerC [Bacillus sp. BT1B_CT2] Length = 305 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 94/311 (30%), Positives = 154/311 (49%), Gaps = 35/311 (11%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +++ L+IE+ SK T+ Y F FL I+ ++Y ++R F+++ Sbjct: 12 FIEYLQIEKNYSKYTIVGYISSIEDFERFLHVQG-----IKGFEDVTYPDVRIFLTEAHE 66 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + R++ + +S ++SF K+L + K+ E+ L + K+ +P+ L EK+ L + Sbjct: 67 KGLTRRTISKKISALRSFYKFLLREKLVKENPFLLVSLPKQDKRIPKFLYEKELEELFEV 126 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 L T + RN A+L LY G+R+SE SL ++ T+ + GKG K R + Sbjct: 127 SDLSTP-----LGQRNQALLEFLYATGMRVSELCSLKESDLDLFLDTVLVHGKGRKQRYI 181 Query: 201 PLLPSVRKAI------------LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 P R+A+ L+ + CPF +F RG PL P + + Sbjct: 182 PFGSFAREALDLYLQNGRRILLLKAKEPCPF---------IFLNQRGGPLTPRGVRYILG 232 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 +L + L H LRH+FATHLL+ G DLRS+Q +LGH LS+TQ+YT+V+ D Sbjct: 233 ELVKKTSGTLHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTHVSK----D 288 Query: 309 WMMEIYDQTHP 319 + + Y HP Sbjct: 289 MLRKTYMSHHP 299 >gi|307728182|ref|YP_003905406.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1003] gi|307582717|gb|ADN56115.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1003] Length = 307 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 92/318 (28%), Positives = 159/318 (50%), Gaps = 33/318 (10%) Query: 21 WLQNLEIERGLSKLTLQSY--ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +L NLE ER LS TL+ Y E D + L + ++ L+ +IR +++ Sbjct: 10 YLSNLEHERRLSAHTLRGYTHELDELRLLA----------KGRPLQSLTAVDIRGAVARA 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + RS+ LS ++F ++L R + + +R K+ +LP+AL+ A Sbjct: 60 HAGGLTARSISHRLSAWRAFYRWLAGRIDLPANPVATVRAPKQPKTLPKALSVDDA---- 115 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL-----------TPQNIMDDQST 187 N L+ T R+ A+L L Y GLR++E + L + + D + Sbjct: 116 -NRLMETPPAASAEGLRDHAMLELFYSSGLRLAELVGLDVRFADADGYRSAGWLKLDSAE 174 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 + + GKG++ RIVP+ +A+ + + + L+ PLF RG L+P V + + Sbjct: 175 VEVLGKGNRRRIVPVGSKALEALNAWLAVRDQMVRLDPH-PLFLSARGNRLSPNVVRERV 233 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 ++ G+P + H LRHSFATH+L + GDLR++Q +LGH ++ TQ+YT ++ ++ Sbjct: 234 KRAALVAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTGLDFQH-- 291 Query: 308 DWMMEIYDQTHPSITQKD 325 + +YDQ HP ++D Sbjct: 292 --LARVYDQAHPRAKKRD 307 >gi|26988201|ref|NP_743626.1| site-specific tyrosine recombinase XerD [Pseudomonas putida KT2440] gi|148549459|ref|YP_001269561.1| site-specific tyrosine recombinase XerD [Pseudomonas putida F1] gi|34222835|sp|Q88MV0|XERD_PSEPK RecName: Full=Tyrosine recombinase xerD gi|24982938|gb|AAN67090.1|AE016337_13 integrase/recombinase XerD [Pseudomonas putida KT2440] gi|148513517|gb|ABQ80377.1| tyrosine recombinase XerD subunit [Pseudomonas putida F1] Length = 298 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 101/309 (32%), Positives = 149/309 (48%), Gaps = 32/309 (10%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKR 78 +L L +E+GLS T SY D +F + E +++ R L I ++ R Sbjct: 11 QFLDALWLEKGLSDNTRVSYRSD---LALFNGWLQEHSVSLPDAGRDL----ILDHLAWR 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q RS R LSG++ F +YL + K+ L + + LP++L+E Sbjct: 64 LDQGYKPRSTARFLSGLRGFFRYLLREKLVAIDPTLQVDMPQLGKPLPKSLSEADV---- 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL + I R+ A+L +LY CGLR++E +SLT + Q LR+ GKG K R Sbjct: 120 -EALLQAPDLGEAIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKER 178 Query: 199 IVPLLPSV--------RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 +VP+ R E + P D+ LF RG+ + F I+ Sbjct: 179 LVPMGEEAVVWLERYQRDGRAELLNGRPSDV-------LFPSQRGEQMTRQTFWHRIKHH 231 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 R G+ + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + Sbjct: 232 ARVAGIDKPLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKAR----L 287 Query: 311 MEIYDQTHP 319 +++ Q HP Sbjct: 288 QQLHAQHHP 296 >gi|260583968|ref|ZP_05851716.1| tyrosine recombinase XerD [Granulicatella elegans ATCC 700633] gi|260158594|gb|EEW93662.1| tyrosine recombinase XerD [Granulicatella elegans ATCC 700633] Length = 297 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 93/295 (31%), Positives = 156/295 (52%), Gaps = 20/295 (6%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 +GLS+ T+ SY+ D +F FL ++ I+ +++ Y+ I F+ + S Sbjct: 15 QGLSQNTVMSYQRDLMKFYQFL-----KEQQIRDWKEVDYSLIVLFLQDLKQDGYATSST 69 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--LLHTS 146 R +S +K F K+L++ ++ + + ++ KKS LP+AL VD V +L++ Sbjct: 70 SRMISCLKKFFKFLQQEQLVETNPVQPLKVPKKSKMLPKALT-------VDEVTQVLNSC 122 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 + + R+ A+L LLY G+R+SE ++L ++ + L+ GKG+K RI+P+ + Sbjct: 123 DTSTVLGLRDKAMLELLYATGMRVSELITLKLSDLHLELGFLQTIGKGNKQRIIPIGQAA 182 Query: 207 RKAILEY--YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 + Y Y + N LF RG F + ++++ + G+ + HT Sbjct: 183 TNWVQHYLTYARVVLEQESNPVEYLFLNHRGNGFTRQGFWKNLKKIVQEAGVHKDVSPHT 242 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LRHSFATH+L G DLR +Q +LGH +STTQIYT++ ++ M EIY Q HP Sbjct: 243 LRHSFATHILEAGADLRIVQELLGHSDISTTQIYTHLTNER----MKEIYQQAHP 293 >gi|303236823|ref|ZP_07323402.1| tyrosine recombinase XerD [Prevotella disiens FB035-09AN] gi|302482991|gb|EFL46007.1| tyrosine recombinase XerD [Prevotella disiens FB035-09AN] Length = 318 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 91/280 (32%), Positives = 145/280 (51%), Gaps = 12/280 (4%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L++E+ S TL +Y D + L +LA EKI + + I F + IG Sbjct: 29 LKLEKAYSANTLDAYMRDVEKLLKYLA---NEKINPEEAK---LENIENFAAAVGDLGIG 82 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 RSL R LSG++ F +YL + + K+ LP L+ ++ +L + + L Sbjct: 83 ARSLARILSGVRQFFRYLVLEGYIEADPTELLESPKQPQHLPEVLSTEEVDSLENAIDL- 141 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 +KW RN AI+ +L+ CGLR+SE +L N+ D+ +R+ GKG K R+VP+ P Sbjct: 142 ----SKWEGHRNKAIIEVLFSCGLRVSELTNLKLSNLYADEQFVRVMGKGSKERLVPISP 197 Query: 205 SVRKAI-LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 K + + D + + +F RG L + I++ + G+ + + H Sbjct: 198 RALKELNFWFIDRNQMKIKEGEEDFVFLNRRGAHLTRTMILIMIKKYAQEAGIKKTISPH 257 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 TLRHSFAT LL G DLR+IQ++LGH + TT+IYT++++ Sbjct: 258 TLRHSFATALLEGGADLRAIQAMLGHESIGTTEIYTHIDT 297 >gi|52080216|ref|YP_079007.1| site-specific tyrosine recombinase XerC [Bacillus licheniformis ATCC 14580] gi|52785593|ref|YP_091422.1| site-specific tyrosine recombinase XerC [Bacillus licheniformis ATCC 14580] gi|81385577|sp|Q65JN5|XERC_BACLD RecName: Full=Tyrosine recombinase xerC gi|52003427|gb|AAU23369.1| site-specific integrase/recombinase [Bacillus licheniformis ATCC 14580] gi|52348095|gb|AAU40729.1| CodV [Bacillus licheniformis ATCC 14580] Length = 304 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 94/311 (30%), Positives = 154/311 (49%), Gaps = 35/311 (11%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +++ L+IE+ SK T+ Y F FL I+ ++Y ++R F+++ Sbjct: 11 FIEYLQIEKNYSKYTIVGYISSIEDFERFLHVQG-----IKGFEDVTYPDVRIFLTEAHE 65 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + R++ + +S ++SF K+L + K+ E+ L + K+ +P+ L EK+ L + Sbjct: 66 KGLTRRTISKKISALRSFYKFLLREKLVKENPFLLVSLPKQDKRIPKFLYEKELEELFEV 125 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 L T + RN A+L LY G+R+SE SL ++ T+ + GKG K R + Sbjct: 126 SDLSTP-----LGQRNQALLEFLYATGMRVSELCSLKESDLDLFLDTVLVHGKGRKQRYI 180 Query: 201 PLLPSVRKAI------------LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 P R+A+ L+ + CPF +F RG PL P + + Sbjct: 181 PFGSFAREALDLYLQNGRRILLLKAKEPCPF---------IFLNQRGGPLTPRGVRYILG 231 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 +L + L H LRH+FATHLL+ G DLRS+Q +LGH LS+TQ+YT+V+ D Sbjct: 232 ELVKKTSGTLHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTHVSK----D 287 Query: 309 WMMEIYDQTHP 319 + + Y HP Sbjct: 288 MLRKTYMSHHP 298 >gi|117928448|ref|YP_872999.1| tyrosine recombinase XerD [Acidothermus cellulolyticus 11B] gi|117648911|gb|ABK53013.1| tyrosine recombinase XerD [Acidothermus cellulolyticus 11B] Length = 311 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 97/311 (31%), Positives = 153/311 (49%), Gaps = 24/311 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L ++ +E+GL+K T+ Y D R++ FL E++ T R ++ I AF++ Sbjct: 11 EAYLAHVAVEKGLAKNTVAGYRRDLRRYQEFL----EQRGTTDP-RAVTEEHITAFLAAL 65 Query: 79 RTQK-----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 RT + S R++ ++ ++ IT + ++R LP+A+ + Sbjct: 66 RTGDADHPPLAVSSSARAVVAVRGLHRFAAMDGITADDPSRDVRPPTPGRRLPKAITVAE 125 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L+ V H E R+ A+L +LYG G RISEA+ L ++ D +R++GK Sbjct: 126 VERLLAAVDGHAPREL-----RDRALLEVLYGTGARISEAVGLAIDDLDLDAGLVRLRGK 180 Query: 194 GDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 G K R+VPL R A+ EY L + + + +F RG L+ +R Sbjct: 181 GSKQRVVPLGGYARSALREYLTAGRPALLAAARSGSARGAVFLNARGGRLSRQSAWTVLR 240 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 + GL + HTLRHSFATHLL G D+R +Q +LGH ++TTQIYT V D Sbjct: 241 RAALRAGLATVISPHTLRHSFATHLLEGGADIRVVQELLGHASVTTTQIYTLVTV----D 296 Query: 309 WMMEIYDQTHP 319 + E+Y HP Sbjct: 297 TLREVYAMAHP 307 >gi|308177312|ref|YP_003916718.1| tyrosine recombinase subunit XerC [Arthrobacter arilaitensis Re117] gi|307744775|emb|CBT75747.1| tyrosine recombinase subunit XerC [Arthrobacter arilaitensis Re117] Length = 334 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 100/319 (31%), Positives = 154/319 (48%), Gaps = 30/319 (9%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L+ L+ ERG S+ TL++Y+ D R FL E ++Q+S +R +++ Sbjct: 25 DYLEYLQRERGRSENTLRAYDVDLRNLGQFL----NEHAGDPALKQISVQMLRDWLAYLH 80 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP---------RALN 130 ++ +L R +S +K+F + K + L + KK LP R L+ Sbjct: 81 ESEVSRTTLARRISAVKNFFAWALKNHLVENDPALRLAAPKKERRLPHILQPSQIDRLLS 140 Query: 131 EKQALTLVDNVLLHTSHET------KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 E LT + T + I R+ I LLY GLRISE ++L +I + Sbjct: 141 EHAGLTEENEAARQKGDGTDQDPKARAIQCRDRVIAELLYASGLRISELVALDISDIDFE 200 Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILE----YYDLCPFDLNLNIQLPLFRGIRGKPLNP 240 + TLR+ GKG+K R+VP + I+E Y + + + L G+RG LN Sbjct: 201 RRTLRVLGKGNKERMVPFGKPAERVIIEWIRSYRRVVAAE---QAEDALLVGVRGSRLNV 257 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + I R LG ++ H LRH+ ATHLL G DLR++Q LGH L+TTQ+YT+ Sbjct: 258 RQAREVIASALRSLGDTSASGPHALRHTVATHLLDGGADLRAVQEFLGHASLATTQLYTH 317 Query: 301 VNSKNGGDWMMEIYDQTHP 319 V+ D + + Y Q HP Sbjct: 318 VSV----DRLRQSYRQAHP 332 >gi|282889659|ref|ZP_06298199.1| hypothetical protein pah_c003o054 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500486|gb|EFB42765.1| hypothetical protein pah_c003o054 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 304 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 97/309 (31%), Positives = 162/309 (52%), Gaps = 22/309 (7%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE--- 70 +E +++L + E+GLS T+++Y D + F A Y + Q +R+ E Sbjct: 12 FFREIKDFLVFIRSEKGLSSNTIEAYMRDVQNF----ANYAWQ----QEVRRYQAVEPEH 63 Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 + AF+ ++ ++ R+L +K F +LK+ ++ + + + K LP L+ Sbjct: 64 LIAFLGSLKSADYATSTISRTLVSLKVFFGFLKREGTIEQNPSMLLESPKLWQLLPDILD 123 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 ++ ++L++ R+ AI LLYG GLR+SE +LT +I DDQ +R+ Sbjct: 124 IEEV-----DLLMNQPDNKTAKGVRDRAIFELLYGSGLRVSEVCTLTIYSI-DDQ-YIRV 176 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 GKG K RIVP+ A+ +Y L + + + LF +RGK ++ R I++ Sbjct: 177 YGKGSKERIVPIGSQALMAVDQYLSLYRWQWDSEKEQSLFVTLRGKSMDRISIWRSIKEY 236 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 + G+ + + HTLRHSFATHLL+NG DLR IQ +LGH +S+T YT V+S + + Sbjct: 237 AQQAGITKTISPHTLRHSFATHLLNNGADLRVIQDLLGHANISSTDRYTRVSSAH----L 292 Query: 311 MEIYDQTHP 319 E + + HP Sbjct: 293 QEAFHRFHP 301 >gi|171464293|ref|YP_001798406.1| integrase family protein [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193831|gb|ACB44792.1| integrase family protein [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 333 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 95/324 (29%), Positives = 161/324 (49%), Gaps = 33/324 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +L L + R LS TL++Y D F T E + + S +R + + Sbjct: 13 QEYLHELHVLRQLSPHTLKAYGMDLSDLQNFALEDTVELLKV------SNGHVRRWAGRL 66 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKR---------KITTE---SNILNMRNLKKSNSLP 126 ++ RS+ R+LS + + +L ++ K+T+ + + +++ K+ SLP Sbjct: 67 HSKGKSPRSIARTLSAWRGWYDWLSEKDARRDVHAGKVTSALVANPVDDVKAPKRPKSLP 126 Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD--- 183 +AL+ +QAL LV+ + + R++AI+ LLY GLR+SE L + D Sbjct: 127 KALSVEQALALVNQAVKEAEEKKDLESIRDAAIIGLLYSSGLRLSELLGIDVIQSKDRQH 186 Query: 184 --------DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235 D + + + GKG K R VP+ K++ + +L + LF G Sbjct: 187 ESAGWLDWDAAEVTVLGKGGKRRSVPVGVPAMKSLAAWRELRDDGSYAEESIALFLSATG 246 Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 K L+P Q +R L GLP H +RHSFA+H+L + DLR++Q +LGH +++T Sbjct: 247 KRLSPRTVQARLRTLAMRAGLPTHVHPHMMRHSFASHVLQSSQDLRAVQEMLGHASIAST 306 Query: 296 QIYTNVNSKNGGDWMMEIYDQTHP 319 QIYT+++S++ + + YD+THP Sbjct: 307 QIYTSLDSQH----LAQAYDKTHP 326 >gi|119357566|ref|YP_912210.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides DSM 266] gi|119354915|gb|ABL65786.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides DSM 266] Length = 304 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 93/302 (30%), Positives = 158/302 (52%), Gaps = 13/302 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +N+L +L IER S+ T SY D ++L+ + + T++ I ++ ++IR FIS+ Sbjct: 13 ENFLNHLLIERNFSQNTRVSYRNDLHRYLLTV------QETMKPITSVTASDIRQFISEL 66 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + ++ R++S I+S ++L + + N+ K++ +LP L ++ L L+ Sbjct: 67 HETGLEPATIARNISAIRSLFRFLVIEHLLEANPAENIHQPKQAKNLPSVLTIEETLRLL 126 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + +L H R+ AIL LY G+R+SE L Q++ + +RI GKG K R Sbjct: 127 EAPIL--QHPPGKYLLRDKAILEFLYATGVRVSELTELQQQSLFLEAGFVRILGKGSKER 184 Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ S +I Y L N N Q +F RGK L+ +++ G+ Sbjct: 185 LVPIGLSAINSINRYRTELRIGLINRNSQDYVFLNARGKKLSRMAIYSMVQEYASLSGIE 244 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + HTLRH+FATHLL G DLR++Q +LGH + TQ+YT+++ ++ E++ Sbjct: 245 KKISPHTLRHTFATHLLEGGADLRAVQEMLGHSSILATQLYTHIDR----SFIKEVHKTF 300 Query: 318 HP 319 HP Sbjct: 301 HP 302 >gi|289667446|ref|ZP_06488521.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 305 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 93/310 (30%), Positives = 152/310 (49%), Gaps = 19/310 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-----RQLSYTEIRAF 74 +L L++ER +S TL +Y D + + A + E QT QL +R F Sbjct: 6 EFLSYLQVERQVSAHTLDAYRRDLAALVAWTAEHNTEDGAQQTATPLDTAQLDSAHLRQF 65 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 ++ + + +SL+R LS +S+ +L K S MR K LP+ L+ +A Sbjct: 66 VAAEHRRGLSPKSLQRRLSACRSYYAWLLKHGRIASSPAAAMRAPKSPRKLPQVLDADEA 125 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 + LV+ + R+ A+L L Y GLR+SE +L +++ D + + GKG Sbjct: 126 VRLVEVP------TDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVMVLGKG 179 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 K R+VP+ A+ E+ D + +F G G ++ Q I+QL Sbjct: 180 SKQRLVPVGSHAIAALREWLR----DSGASADTHVFPGRAGGAISQRAVQIRIKQLALRQ 235 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ H LRHSFA+H+L + GDLR +Q +LGH ++TTQIYT+++ ++ + ++Y Sbjct: 236 GMFKDVHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQH----LAKVY 291 Query: 315 DQTHPSITQK 324 D HP +K Sbjct: 292 DAAHPRAKRK 301 >gi|311030138|ref|ZP_07708228.1| site-specific tyrosine recombinase XerC [Bacillus sp. m3-13] Length = 302 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 95/305 (31%), Positives = 160/305 (52%), Gaps = 19/305 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L+ L+IE+ SK T+ Y+ D F F+ EE I+ +I ++++TE R ++++ Sbjct: 10 SFLEYLQIEKNYSKYTIVFYQKDIEDFFDFMK---EEAIS--SINEVTHTEARMYLTRLH 64 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 +K +S+ R S ++SF K+L + + ++ ++ K+ LP+ L ++ +D Sbjct: 65 QKKYARKSVARKTSSLRSFYKFLLREEKVEQNPFTSVSLPKQEKRLPQFLYSEE----LD 120 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + + ET + RN AIL LLY G+RISE + +I T+ + GKG+K R Sbjct: 121 KLFAVSDLETP-LGQRNQAILELLYATGIRISECCHIQIHDIDFQVGTILVTGKGNKQRY 179 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYL 254 +P + AI Y + L + P LF RG L P + + + + Sbjct: 180 IPFGSFAQDAIKIYLEDGRKSLLEKQKTPNSTKHLFLNFRGGALTPRGVRLILNDMVQQA 239 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 L + H LRH+FATH+L+ G DLR +Q +LGH LS+TQIYT+V ++ + + Y Sbjct: 240 CSTLHISPHMLRHTFATHMLNEGADLRVVQELLGHASLSSTQIYTHVTKEH----LQKTY 295 Query: 315 DQTHP 319 +Q HP Sbjct: 296 NQFHP 300 >gi|289664010|ref|ZP_06485591.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 305 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 93/310 (30%), Positives = 152/310 (49%), Gaps = 19/310 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-----RQLSYTEIRAF 74 +L L++ER +S TL +Y D + + A + E QT QL +R F Sbjct: 6 EFLSYLQVERQVSAHTLDAYRRDLAALVAWTAEHNTEDGAQQTATPLDTAQLDSAHLRQF 65 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 ++ + + +SL+R LS +S+ +L K S MR K LP+ L+ +A Sbjct: 66 VAAEHRRGLSPKSLQRRLSACRSYYAWLLKHGRIASSPAAAMRAPKSPRKLPQVLDADEA 125 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 + LV+ + R+ A+L L Y GLR+SE +L +++ D + + GKG Sbjct: 126 VRLVEVP------TDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVMVLGKG 179 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 K R+VP+ A+ E+ D + +F G G ++ Q I+QL Sbjct: 180 SKQRLVPVGSHAIAALREWLR----DSGASADTHVFPGRAGGAISQRAVQIRIKQLAVRQ 235 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ H LRHSFA+H+L + GDLR +Q +LGH ++TTQIYT+++ ++ + ++Y Sbjct: 236 GMFKDVHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQH----LAKVY 291 Query: 315 DQTHPSITQK 324 D HP +K Sbjct: 292 DAAHPRAKRK 301 >gi|24372537|ref|NP_716579.1| integrase/recombinase XerD [Shewanella oneidensis MR-1] gi|34222794|sp|Q7ZAJ8|XERD_SHEON RecName: Full=Tyrosine recombinase xerD gi|24346549|gb|AAN54024.1|AE015540_4 integrase/recombinase XerD [Shewanella oneidensis MR-1] Length = 300 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 99/300 (33%), Positives = 154/300 (51%), Gaps = 16/300 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +L +GLS TL +Y D R F +L + +R + ++RA+++ R Sbjct: 14 FLDDLWSSKGLSDNTLSAYRTDLRHFDRYL------QSQGLRLRDVGQADVRAYLAYRVE 67 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q+ S R LS ++ F YL + K + + + + K S LP +L+E Q VD Sbjct: 68 QQFARTSSARLLSSLRRFYNYLLQTKQISGDPMAQIESPKLSRHLPDSLSESQ----VDR 123 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 +L + + ++ R+ A+L LLY GLR+SE + LT + + Q +RI GKG K R+V Sbjct: 124 LLAEPNVDDP-VECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIIGKGGKERLV 182 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ + Y +L +IQ + F R + + F I+ G+ Sbjct: 183 PMGEMAITEVEHYLTSARHELLGHIQSDVVFPSKRSQMMTRQTFWHRIKLYASRAGIETE 242 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + E++ Q HP Sbjct: 243 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARAR----LQELHQQHHP 298 >gi|189219748|ref|YP_001940389.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4] gi|189186606|gb|ACD83791.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4] Length = 280 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 96/294 (32%), Positives = 144/294 (48%), Gaps = 26/294 (8%) Query: 36 LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95 +++Y ++F F+ + ++ I+ R Y F+ KR K S++ + + Sbjct: 1 MRNYVQPLKEFFSFVKWQQCKEPKIEECRDYLY-----FLCKRPDLKPS--SIRVRFAAL 53 Query: 96 KSFLKYL-KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN---------VLLHT 145 +SF + +++KI ES + K +LPR L+ +Q L++ Sbjct: 54 RSFFNFFYREKKINKESPFSQVMLPKPDRNLPRYLSLEQVQALLNAPQKKWEKEKEKGKK 113 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 S +W R+ A L LYG GLR+ E SL +N L ++GK K R L Sbjct: 114 SRWNEWQWKRDQAWLETLYGAGLRVGELSSLKRKNFFPSDLALLVEGKRKKERYCILGEV 173 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 ++ Y + CPF+ LF RGKPL P FQ +++ GL S + H L Sbjct: 174 ATASLCSYLESCPFESEF-----LFVSSRGKPLTPRFFQLSLKEYLAIAGLDQSISPHKL 228 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 RH+FATHLL G DLRSIQ +LGH LSTTQIYT V++++ + E Y +THP Sbjct: 229 RHTFATHLLEGGADLRSIQELLGHAHLSTTQIYTAVSAEH----LKESYFRTHP 278 >gi|34222990|sp|Q93C64|XERD_LACCA RecName: Full=Tyrosine recombinase xerD gi|15778434|gb|AAL07436.1|AF413208_1 tyrosine recombinase [Lactobacillus casei] Length = 293 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 93/302 (30%), Positives = 156/302 (51%), Gaps = 19/302 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +++ L++ERGL++ T SY+ D F+A+ +++K QT + I+AF+ + Sbjct: 7 DFIHYLDVERGLARTTQVSYQQD---LTTFMAWLSDQK---QTTFPEDFGVIQAFLKHQN 60 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 K S+ R +S ++ F ++L + + + KK+ LP L+ + Sbjct: 61 DTK-APASVSRMISALRKFYRFLLREGAIKSDPMTKIDTPKKAQHLPATLSGTEI----- 114 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + L+ TK + R+ AI L+Y GLR+SE + L + + L++ GKGDK R+ Sbjct: 115 DALMAKPDTTKPLGLRDRAIFELMYATGLRVSEVVGLRLDQLHLAMNLLQVTGKGDKERL 174 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 VP+ P + Y L + Q P +F G L V + ++ +G+ Sbjct: 175 VPISPQAADWVNRYLQESRPRL-IKHQQPKAVFVNFHGHALTRQVIWKNLKAYIASVGIE 233 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T HTLRHSFAT LL NG DLR +Q +LGH +STTQIYT++++++ ++ +Y +T Sbjct: 234 KDVTPHTLRHSFATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQH----LVAVYHKT 289 Query: 318 HP 319 HP Sbjct: 290 HP 291 >gi|74318546|ref|YP_316286.1| tyrosine recombinase XerC [Thiobacillus denitrificans ATCC 25259] gi|74058041|gb|AAZ98481.1| tyrosine recombinase XerC [Thiobacillus denitrificans ATCC 25259] Length = 294 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 102/310 (32%), Positives = 151/310 (48%), Gaps = 27/310 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +LQ+L ER LS TL +Y D L LA T+ K + L+ +IR I K R Sbjct: 7 YLQHLAAERRLSAHTLSAYARD----LENLARLTDGK----PLDTLTSHDIRGAIVKLRA 58 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + S+ R LS + F + +R ++ +R K S +LP L+ L+D Sbjct: 59 GGLAAASVARQLSSWRGFYAFACRRLGYPDNPCAGLRPPKASRALPDILSPDACARLLDA 118 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + + R+ A+ L Y GLR+SE + + ++ R+ GKG K R+V Sbjct: 119 ----PDGDEDLLATRDRAMFELFYSSGLRLSELVGIDLPDLDLASGEARVTGKGKKTRLV 174 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 P+ R+A+ P L L ++ P LF G RG L P Q + + R GL Sbjct: 175 PV---GRQAVAAITAWLPLRLTL-VRTPTEALFVGQRGARLTPRNVQLRLARWARASGLG 230 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW--MMEIYD 315 H LRH+FATH+L + GDLR++Q +LGH +STTQ+YT++ DW + + YD Sbjct: 231 QHVHPHMLRHAFATHVLQSSGDLRAVQEMLGHASISTTQVYTHL------DWQHLAKAYD 284 Query: 316 QTHPSITQKD 325 Q HP +KD Sbjct: 285 QAHPRARKKD 294 >gi|229061434|ref|ZP_04198779.1| Tyrosine recombinase xerC [Bacillus cereus AH603] gi|228717857|gb|EEL69505.1| Tyrosine recombinase xerC [Bacillus cereus AH603] Length = 301 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 94/311 (30%), Positives = 160/311 (51%), Gaps = 31/311 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q ++ L+IER SK T+ SY+ D F+ F+ E+ I + ++Y ++R +++ Sbjct: 10 QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYLTTL 64 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137 QK+ +S+ R +S ++S ++L R+ + N + +L KK S+P+ L ++ Sbjct: 65 HDQKLARKSVARKVSSLRSLYRFLM-REGYQKDNPFALASLPKKELSIPKFLYAEEL--- 120 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 L S + RN A+L L+Y G+R+SE ++L +I T+ + GKG K Sbjct: 121 --EELFEVSDTGAPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 178 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248 R +P + A++ Y + N QL +F +GKPL + + Sbjct: 179 RYIPFGSYAQDALITYIE------NGRKQLAQKTEEQSHMVFLNAKGKPLTDQGVRYVLN 232 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 +L + L + + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ + Sbjct: 233 ELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 288 Query: 309 WMMEIYDQTHP 319 + +Y + HP Sbjct: 289 RLRSVYMKHHP 299 >gi|315023982|gb|EFT36984.1| tyrosine recombinase XerD [Riemerella anatipestifer RA-YM] Length = 303 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 91/303 (30%), Positives = 160/303 (52%), Gaps = 15/303 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q++ L+ E+ LS T+ +Y D ++ L ++ E K+ + +SY +I+ ++ + Sbjct: 8 QDFANALKFEKNLSNNTIDAYTRDIKK----LQYFAENKLNDTSALDISYEQIQEYLYQI 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 +RS R +S IK+F K+L + ++ ++ + K LP LN ++ +L+ Sbjct: 64 SKNYTNERSQSRWISSIKAFFKFLHEDELRADNPARLLETPKLGLYLPDTLNFEEIESLI 123 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + + +T + RN I+ LYGCGLR+SE + L N+ ++ + + GKG K R Sbjct: 124 EAI-----DKTTSLGKRNHTIIETLYGCGLRVSELVELKISNLNFEEEFIIVDGKGGKTR 178 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VPL + I +Y ++ +N + LF RG L + I+ L + Sbjct: 179 LVPLAQYTAELIKDYLLEVRSEIKINPKHSDILFLNRRGSKLTRVMVFIIIKDLALQANI 238 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + + HT RHSFATHLL NG DLR IQ +LGH ++TT+IYT++++++ + +M + Sbjct: 239 KKNISPHTFRHSFATHLLKNGADLRYIQEMLGHSSITTTEIYTHLDNEDLRETIM----K 294 Query: 317 THP 319 HP Sbjct: 295 YHP 297 >gi|294056182|ref|YP_003549840.1| integrase family protein [Coraliomargarita akajimensis DSM 45221] gi|293615515|gb|ADE55670.1| integrase family protein [Coraliomargarita akajimensis DSM 45221] Length = 307 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 101/302 (33%), Positives = 157/302 (51%), Gaps = 14/302 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 + +L +ER LS+ T+++Y F+ + + IR + ++R+F+ + Sbjct: 15 FCAHLALERRLSEYTVRNYRHAVEVFVESVQERGNWQGDFAAIRSV---DVRSFLVDQ-G 70 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK-SNSLPRALNEKQALTLVD 139 +K+ R+L +SG+++F YL+K+ ESN +L K LP+ L E Q L+D Sbjct: 71 RKVSRRTLHNQVSGLRAFYLYLRKQG-QVESNPFAGVSLPKLDKPLPKFLTESQMRRLLD 129 Query: 140 N-VLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 V L + + DA R+S IL LLYG GLR+SE +L I + R+ GKG K Sbjct: 130 APVELWKAGKLSEFDAFRDSLILELLYGGGLRVSELCALNHGAIDLQRGVARVIGKGQKE 189 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 R+ PL P + + + D L+ + R G+ + P + Q+ ++ LP Sbjct: 190 RLCPLGPVAIQCLKTFVDRFKLSAELDQAVACQRN--GRRMEPRMVQKQLKLHLAQAELP 247 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T H LRHS+ATHLL NG DLR++Q +LGH LSTTQ+YT+V+ + E + Q Sbjct: 248 SDMTPHKLRHSYATHLLDNGADLRAVQELLGHANLSTTQVYTHVSIAR----LKEAHKQA 303 Query: 318 HP 319 HP Sbjct: 304 HP 305 >gi|291299701|ref|YP_003510979.1| integrase family protein [Stackebrandtia nassauensis DSM 44728] gi|290568921|gb|ADD41886.1| integrase family protein [Stackebrandtia nassauensis DSM 44728] Length = 317 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 92/301 (30%), Positives = 145/301 (48%), Gaps = 15/301 (4%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++ +L E G S T++ Y D L+ LA ++ I L R++++ RR Sbjct: 29 QFVHHLTHECGRSAHTVRGYRADVTSLLVHLAATGTTRLAGVDIAGL-----RSWLANRR 83 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q I SL R +S +++F + ++ + ++ P L QA TL Sbjct: 84 AQGIARASLARKVSAVRAFTAWAHRQGHLDADAGARLSGPSVPHNPPEILRTDQAETLAA 143 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 T+ + R+ A++ LLY G+R+SE L ++ ++ LR+ GKG K R Sbjct: 144 A----TASDGSATGLRDRAVVELLYATGIRVSELCGLDVASVDRSRNVLRVFGKGAKERT 199 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VP +A+ +Y +L + L G+RG L+P +R +R G+P Sbjct: 200 VPFGIPAARAVDDYLQRARPELAADHSGDALLLGVRGGRLHPSTVRRVLRDWLSRTGMP- 258 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 S T H LRHS ATHLL G DLRS+Q +LGH + +TQIYT+V+++ + Y Q H Sbjct: 259 SLTPHGLRHSAATHLLDGGADLRSVQELLGHASIDSTQIYTHVSAER----LRGAYRQAH 314 Query: 319 P 319 P Sbjct: 315 P 315 >gi|163941569|ref|YP_001646453.1| site-specific tyrosine recombinase XerC [Bacillus weihenstephanensis KBAB4] gi|229013014|ref|ZP_04170179.1| Tyrosine recombinase xerC [Bacillus mycoides DSM 2048] gi|229134638|ref|ZP_04263448.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST196] gi|229168570|ref|ZP_04296293.1| Tyrosine recombinase xerC [Bacillus cereus AH621] gi|163863766|gb|ABY44825.1| tyrosine recombinase XerC [Bacillus weihenstephanensis KBAB4] gi|228614976|gb|EEK72078.1| Tyrosine recombinase xerC [Bacillus cereus AH621] gi|228648899|gb|EEL04924.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST196] gi|228748268|gb|EEL98128.1| Tyrosine recombinase xerC [Bacillus mycoides DSM 2048] Length = 301 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 94/311 (30%), Positives = 160/311 (51%), Gaps = 31/311 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q ++ L+IER SK T+ SY+ D F+ F+ E+ I + ++Y ++R +++ Sbjct: 10 QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYLTTL 64 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137 QK+ +S+ R +S ++S ++L R+ + N + +L KK S+P+ L ++ Sbjct: 65 HDQKLARKSVARKVSSLRSLYRFLM-REGYQKDNPFALASLPKKELSIPKFLYAEEL--- 120 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 L S + RN A+L L+Y G+R+SE ++L +I T+ + GKG K Sbjct: 121 --EELFEVSDTGAPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 178 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248 R +P + A++ Y + N QL +F +GKPL + + Sbjct: 179 RYIPFGSYAQDALITYIE------NGRKQLAQKTEEQSHMVFLNAKGKPLTDQGVRYVLN 232 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 +L + L + + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ + Sbjct: 233 ELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 288 Query: 309 WMMEIYDQTHP 319 + +Y + HP Sbjct: 289 RLRSVYMKHHP 299 >gi|254445051|ref|ZP_05058527.1| site-specific recombinase, phage integrase family protein [Verrucomicrobiae bacterium DG1235] gi|198259359|gb|EDY83667.1| site-specific recombinase, phage integrase family protein [Verrucomicrobiae bacterium DG1235] Length = 307 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 105/313 (33%), Positives = 161/313 (51%), Gaps = 16/313 (5%) Query: 13 ELLKERQNWLQ----NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68 E K R W++ +L ER LS T+++YE F FL T+ K + ++S Sbjct: 3 EAEKWRVVWVEPFVRHLSGERRLSAYTVRNYEAALETFFQFLD--TDSKWG-GNLGKVSL 59 Query: 69 TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 E R F+ +++ +++ R+L +SG+++F KY ++ + ++ + K LP Sbjct: 60 REARDFVIEQQ-RRVSRRTLHNYVSGLRTFFKYWIRQGKLEANPLVGLVLPKLPKKLPAF 118 Query: 129 LNEKQALTLVDNVLLHTSHE--TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 + +KQ L+D +L +E T + R+ +L LLYG G R+SE LT + D+ Sbjct: 119 MTQKQVKLLLDGPMLLLENESITAFQAWRDRLVLELLYGAGFRVSELCGLTYGQVSFDEG 178 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 RI GKG K RI PL V A+L+ + F + P+ R P Q Sbjct: 179 VARIVGKGGKSRICPL-GRVAMAVLDKWRR-EFAVGTAFADPVVLSNRRVKWTPRGVQLL 236 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 +++ LP+ T H +RHS+ATHLL NG DLR +Q +LGH +LSTTQIYT+VN Sbjct: 237 LKKYLALADLPMDLTPHKIRHSYATHLLDNGADLRLVQELLGHAKLSTTQIYTHVNIGR- 295 Query: 307 GDWMMEIYDQTHP 319 + E +DQ HP Sbjct: 296 ---LKEAFDQAHP 305 >gi|28211202|ref|NP_782146.1| integrase/recombinase [Clostridium tetani E88] gi|28203642|gb|AAO36083.1| integrase/recombinase [Clostridium tetani E88] Length = 303 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 84/295 (28%), Positives = 168/295 (56%), Gaps = 19/295 (6%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 +++GLSK TL +Y D +FL FL E+ + ++ + ++Y + S ++++K + Sbjct: 24 MDKGLSKNTLDAYIRDVNRFLDFLKEREEDILDVEEVTIMAYVQ-----SLQKSRK-ANS 77 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S+ R++ I++F K+L K+ E ++N K ++P+ L ++ ++LL+ Sbjct: 78 SIVRNVVSIRNFYKFLYKKGYIDEDPVINYELPKVKRNIPKVLTVEEV-----DILLNAP 132 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 + ++ R+ A+L ++Y G++++E L++T ++ S ++ +G +K RI+P+ Sbjct: 133 NISEEKGIRDKAMLEVMYATGVKVTELLNMTVFDVNLKLSYIKCRGSKNKERIIPIGAYA 192 Query: 207 RKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 + +Y + P N+NI LF ++G + F + +++ + G+ S ++T Sbjct: 193 VNCLDDYLSVRP---NINIYNLDYLFLNLKGTQMTRQGFWKIVKKYAKISGIKKSINSYT 249 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LRHSFA HLL NG D++S+Q +LGH L+ TQIY+ +++K+ + E+Y +THP Sbjct: 250 LRHSFAVHLLQNGADMKSVQELLGHSDLAATQIYSTISNKSK---IAEVYKKTHP 301 >gi|226945992|ref|YP_002801065.1| site-specific tyrosine recombinase XerD [Azotobacter vinelandii DJ] gi|226720919|gb|ACO80090.1| Site-specific tyrosine recombinase [Azotobacter vinelandii DJ] Length = 298 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 103/322 (31%), Positives = 156/322 (48%), Gaps = 29/322 (9%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT- 59 M G P+I F L+ L +E+GLS T +Y D +F + E + Sbjct: 1 MPGVEHPQIERF---------LEALWLEKGLSAHTRAAYRSDLE---LFNGWLCERGLAL 48 Query: 60 IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119 ++ R+L I ++ R RS R LSG++ F +YL + + L + Sbjct: 49 VEVGREL----ILDHLAWRVDAGYKARSTARFLSGLRGFFRYLLREGVIAGDPTLQVELP 104 Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 + LP++L+E LL + + R+ A+L +LY CGLR+SE + L + Sbjct: 105 QLGRPLPKSLSEADV-----EALLAAPEDDDPLGLRDRAMLEVLYACGLRVSELVGLRLE 159 Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKP 237 + Q +R+ GKG K R+VPL A LE Y + P L LF +RG+ Sbjct: 160 QLNLRQGVVRVFGKGSKERLVPLGEEA-IAWLERYLVEARPLLLGGRPSDVLFPSLRGEQ 218 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + F I+ R G+ S + HTLRH+FATHLL++G DLR +Q +LGH LSTTQI Sbjct: 219 MTRQTFWHRIKHHARLAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQI 278 Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319 YT++ + E++ + HP Sbjct: 279 YTHIARAR----LQELHARHHP 296 >gi|299533133|ref|ZP_07046518.1| phage integrase [Comamonas testosteroni S44] gi|298718910|gb|EFI59882.1| phage integrase [Comamonas testosteroni S44] Length = 348 Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 95/332 (28%), Positives = 159/332 (47%), Gaps = 38/332 (11%) Query: 5 NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64 LPE+V ++L+++ +++ L++ T Y D + F +E +T+Q Sbjct: 15 QLPEVV--------HSYLEHVRVQKRLAERTHTLYALDLIKLQSFAQAAAQELLTLQP-- 64 Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 + IR F ++ R + LSG +SF ++ +R++ + + +R K + Sbjct: 65 ----SHIRRFAAQMHGAGRSARGIALILSGWRSFFRWAAQRELVPFNPVEGVRGPKAAKP 120 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQN-- 180 LP+AL A+ L W++AR+ A+ LLY CGLR++E L L P Sbjct: 121 LPKALAVDDAVQLAS---FQNPEADPWMEARDVAMTELLYSCGLRVAELVGLDLRPDQQS 177 Query: 181 -------IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL--CPF----DLNLNIQL 227 I + +QGKG K RIVP+ A+ + L C L + Sbjct: 178 RHEGRGWIDLEAGDAHVQGKGSKRRIVPVGRMAILALQRWLALRSCALVGAAQLKAQDEA 237 Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 LF G RG+ L+ ++Q + GL H LRHSFA+H+L + GDLR++Q +L Sbjct: 238 ALFVGRRGERLSAQSVWSRLKQRGQQAGLATGVHPHVLRHSFASHMLQSSGDLRAVQELL 297 Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 GH ++TTQIYT ++ ++ + + Y++ HP Sbjct: 298 GHSSIATTQIYTRLDFQH----LAQAYEKAHP 325 >gi|257876703|ref|ZP_05656356.1| site-specific recombinase [Enterococcus casseliflavus EC20] gi|257810869|gb|EEV39689.1| site-specific recombinase [Enterococcus casseliflavus EC20] Length = 299 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 98/307 (31%), Positives = 154/307 (50%), Gaps = 21/307 (6%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY-TEEKITIQTIRQLSYTEIRAFIS 76 ++ + + L +ERG S+ T ++Y+ D F FL E+ + ++ Y ++R ++S Sbjct: 7 QEEFFRYLIVERGYSEKTKKAYQEDMNDFFHFLKESGNEDPLAVE------YRDVRVYLS 60 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 ++ S+ R ++ ++SF ++L K +I E+ + KK+ LPR EK+ Sbjct: 61 YLTERRYSRNSISRKMASLRSFYQFLTKHEIVKENPFAYIHLKKKNAKLPRFFYEKEMDA 120 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L +V + + RN A+L +LYG GLR+SE SLT I + L I GKG+K Sbjct: 121 LFQSVA-----GDEPLQQRNQALLEVLYGSGLRVSECSSLTLGAIDWESGVLLIHGKGNK 175 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 R VP + A+ Y L N ++ LF G + + + Q+ R Sbjct: 176 DRYVPFGSYAQAAVKRYLSSGRKQLMEKQNKEHEV-LFVNHLGDGITATGIEYVLNQIIR 234 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 L H LRH+FATHLL+NG D+R++Q +LGH LSTTQIY +V D + + Sbjct: 235 KSSLDSKIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTK----DSLQK 290 Query: 313 IYDQTHP 319 Y Q HP Sbjct: 291 NYRQFHP 297 >gi|229162767|ref|ZP_04290724.1| Tyrosine recombinase xerC [Bacillus cereus R309803] gi|228620649|gb|EEK77518.1| Tyrosine recombinase xerC [Bacillus cereus R309803] Length = 302 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 91/310 (29%), Positives = 157/310 (50%), Gaps = 29/310 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q ++ L+IER SK T+ SY+ D F+ F+ E+ I + ++Y ++R +++ Sbjct: 11 QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYLTTL 65 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 +K+ +S+ R +S ++S ++L + T++ KK S+P+ L ++ Sbjct: 66 HDEKLARKSVARKVSSLRSLYRFLMREGYRTDNPFALASLPKKELSIPKFLYAEEL---- 121 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L S + RN A+L L+YG G+R+SE ++L +I T+ + GKG K R Sbjct: 122 -EELFEVSDTETPLGQRNQALLELMYGTGIRVSECVNLQLTDIDFAVGTILVMGKGKKQR 180 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIRQ 249 +P + A++ Y + N QL +F +G PL + + + Sbjct: 181 YIPFGSYAQDALITYIE------NGRKQLANKTEEHSHMVFLNAKGTPLTSRGVRYVLNE 234 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 L + L + + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ + Sbjct: 235 LIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----ER 290 Query: 310 MMEIYDQTHP 319 + +Y + HP Sbjct: 291 LRSVYMKHHP 300 >gi|59711055|ref|YP_203831.1| site-specific tyrosine recombinase XerD [Vibrio fischeri ES114] gi|197335240|ref|YP_002155204.1| tyrosine recombinase XerD [Vibrio fischeri MJ11] gi|59479156|gb|AAW84943.1| site-specific tyrosine recombinase [Vibrio fischeri ES114] gi|197316730|gb|ACH66177.1| tyrosine recombinase XerD [Vibrio fischeri MJ11] Length = 298 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 96/303 (31%), Positives = 157/303 (51%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + +ERGLS+ TL SY D + L +L + +I + E +A++ + Sbjct: 9 ERFLDTMWMERGLSENTLASYRNDLVKLLQWL---EDNHYKCASISAMGLNEFQAYLVDK 65 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 ++ S R LS ++ F +YL + KI + + + K LP+ L+E+Q Sbjct: 66 EYKQT---SRARMLSALRRFFQYLHREKIRGDDPTALLASPKLPQRLPKDLSEEQV---- 118 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + LL+ + ++ R+ A+L LLY GLR++E +SLT +N+ Q +R+ GKGDK R Sbjct: 119 -DALLNAPNVEDPLELRDRAMLELLYATGLRVTELVSLTMENVSLRQGVVRVTGKGDKER 177 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ + I ++ P L +F R K + F I+ G+ Sbjct: 178 LVPMGENAVDWIEQFLTHGRPMLLGEKSSDVVFPSKRAKQMTRQTFWHRIKHYAVIAGID 237 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL+ G DLR +Q +LGH LSTTQIYT+V ++ + +I+ + Sbjct: 238 SDKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIHQE 293 Query: 317 THP 319 HP Sbjct: 294 HHP 296 >gi|295426297|ref|ZP_06818957.1| tyrosine recombinase XerD [Lactobacillus amylolyticus DSM 11664] gi|295064036|gb|EFG54984.1| tyrosine recombinase XerD [Lactobacillus amylolyticus DSM 11664] Length = 299 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 99/305 (32%), Positives = 167/305 (54%), Gaps = 20/305 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L+ +IERGLS+ T+ +Y D +FL FL +EKI + EI AF++++ Sbjct: 9 EDYLRFGQIERGLSENTITAYRQDLTEFLNFLQ---QEKIDSWPTEAV---EIDAFLARQ 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S+ R +S ++ F ++L ++ I + ++ + + KK LP AL + + + Sbjct: 63 KDLNKASSSISRMISSLRKFYQWLARQNIQKLNPMIEIDSPKKQRRLPVALTQDE----M 118 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D +L + E K + R+ A+L ++Y G+R+SE ++L +++ D +++ GKG K R Sbjct: 119 DRLLAAPNVEKK-LGLRDRALLEMMYATGMRVSEVINLQLEDVHPDLKLIKVFGKGSKER 177 Query: 199 IVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 +VP+ L + K E + N + +F RG L + I+ + Sbjct: 178 LVPVSNIALDWLAKYEKEVRESLVLKQGRNTEF-VFLNNRGGSLTRQAVWQIIKHYCQLA 236 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 + T HTLRH+FATHLL NG DLR +Q ILGH +STTQIYTN+ K+ ++E+Y Sbjct: 237 NINKDVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLTQKH----ILEVY 292 Query: 315 DQTHP 319 +THP Sbjct: 293 IETHP 297 >gi|323524461|ref|YP_004226614.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1001] gi|323381463|gb|ADX53554.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1001] Length = 307 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 89/320 (27%), Positives = 159/320 (49%), Gaps = 37/320 (11%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L NLE ER LS TL+ Y + + + + ++ L+ +IR +++ Sbjct: 10 YLSNLEHERRLSAHTLRGYAHELDELRLL--------TKGRPLQSLTAVDIRGAVARAHA 61 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS+ LS ++F ++L R + + +R K++ +LP+AL+ A N Sbjct: 62 GGLTARSISHRLSAWRAFYRWLAGRVDLPANPVATVRAPKQAKALPKALSVDDA-----N 116 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL-----------TPQNIMDDQSTLR 189 L+ + R+ A+L L Y GLR+SE + L + + D + + Sbjct: 117 RLMESPPAASAEGLRDHAMLELFYSSGLRLSELVGLDVRFADVDGHRSAGWLKLDSAEVE 176 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245 + GKG++ RIVP+ +A+ + ++ D + PLF RG L+P V + Sbjct: 177 VLGKGNQRRIVPVGSKALEALNAWLAVRDEMVKHDPH-----PLFLSARGNRLSPNVVRE 231 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 +++ G+P + H LRHSFATH+L + GDLR++Q +LGH ++ TQ+YT ++ ++ Sbjct: 232 RVKRAALVAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTGLDFQH 291 Query: 306 GGDWMMEIYDQTHPSITQKD 325 + +YDQ HP ++D Sbjct: 292 ----LAHVYDQAHPRAKKRD 307 >gi|260549307|ref|ZP_05823527.1| site-specific tyrosine recombinase [Acinetobacter sp. RUH2624] gi|260407713|gb|EEX01186.1| site-specific tyrosine recombinase [Acinetobacter sp. RUH2624] Length = 308 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 101/313 (32%), Positives = 170/313 (54%), Gaps = 30/313 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL+ +I+ S+ T+ +YE D + FL F +KI ++ + +++R ++++R Sbjct: 15 WLKERKIQNQ-SEHTITAYERDVKSFL---EFCDSKKINLKNVEA---SDLREYLAQRVE 67 Query: 81 Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q ++ S++R L+ I+ F+K+ ++ K E N + LK+ PR L + V+ Sbjct: 68 QDQLSASSMQRHLTSIRQFMKWAEQGKYL-EINPTDDFKLKRQ---PRPLPGMIDIETVN 123 Query: 140 NVLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 +L E K ID R+ A+L LLY GLR++E LT ++I ++ +RI GKG+ Sbjct: 124 QILDQPMPE-KPIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRHLVRITGKGN 182 Query: 196 KIRIVPLLPSVRKAILEYYDLCP-----FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 K RIVP ++++L + + FD N + F G L P ++ ++ Sbjct: 183 KTRIVPFGKKAKESLLNWLKVYKIWKGHFDQNAFV----FISQHGGVLTPRQIEKRVKLQ 238 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 + G+ + H LRH FA+H+LS+ GDLRS+Q +LGH LSTTQIYT+++ D + Sbjct: 239 AQRAGVNVDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDF----DHL 294 Query: 311 MEIYDQTHPSITQ 323 ++YDQ HP T+ Sbjct: 295 AQVYDQAHPRATK 307 >gi|90961925|ref|YP_535841.1| XerC/CodV family integrase/recombinase [Lactobacillus salivarius UCC118] gi|90821119|gb|ABD99758.1| Integrase/recombinase, XerC/CodV family [Lactobacillus salivarius UCC118] gi|300214646|gb|ADJ79062.1| Integrase/recombinase, XerC/CodV family [Lactobacillus salivarius CECT 5713] Length = 298 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 91/296 (30%), Positives = 155/296 (52%), Gaps = 25/296 (8%) Query: 21 WLQNLE----IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 W++ + IE+ S TL++Y D + F+ F+ +E ++ +++ ++ A++S Sbjct: 5 WIEEFKKYLLIEKQYSDETLKAYSEDLQHFVDFI----DETGGAKSFKEIGSNDVHAYMS 60 Query: 77 KRRTQKIGDR----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 + DR S+ R +S +++F +L K ++T E+ ++ + SLPR EK Sbjct: 61 Y-----LYDRYEMTSISRMISSLRAFYNFLIKNELTDENPFAYVQLKRHPRSLPRFFYEK 115 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + L + T +T+ + R+ A+L LYG G+R+SE L +N+ + + G Sbjct: 116 EMTALFEA----TEGDTQML-IRDRALLESLYGTGMRVSECTGLKMENVDLTNKKMLLHG 170 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQ 249 KGDK R+VP ++A+ Y++ L +F G PL P ++Q Sbjct: 171 KGDKDRLVPFGSYCQEALQRYFEQTRTPLMEKYHRDHDLVFVNHYGNPLTPAGVAYILKQ 230 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + + L S H LRH+FATHL+SNG DLR++Q +LGH LSTTQIYT+V ++ Sbjct: 231 IVKRSSLHTSIHPHELRHTFATHLMSNGADLRAVQELLGHSSLSTTQIYTHVTPEH 286 >gi|253997434|ref|YP_003049498.1| tyrosine recombinase XerD [Methylotenera mobilis JLW8] gi|253984113|gb|ACT48971.1| tyrosine recombinase XerD [Methylotenera mobilis JLW8] Length = 302 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 93/288 (32%), Positives = 146/288 (50%), Gaps = 23/288 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L + +E GLSK TL SY D F I+ + ++ +TI Y ++ +SK Sbjct: 16 SFLDAIWLEDGLSKNTLDSYRLDLTAFAIWASSQHKQLLTIDKADVQQYLAVKFPLSK-- 73 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL-- 137 RS+ R ++ ++ F +Y + + L + + K SLP++LNE++ + L Sbjct: 74 -----PRSIGRLIASLRRFYRYNLRENLIAIDPTLQIESPKLPRSLPKSLNEEEVMALLN 128 Query: 138 ---VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 VD+V + R+ A+L LLY GLR+SE +S+ + S +R+ GKG Sbjct: 129 APNVDDV----------VGLRDKAMLELLYASGLRVSELVSIKTSEVSMSDSVVRVTGKG 178 Query: 195 DKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 K R+VP+ + + I Y P L + LF RG + F I++ Sbjct: 179 SKTRLVPMGENAVEWISHYLKAARPQILQNRLSDALFVTNRGDAMTRQTFWHMIKRYALL 238 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G+ + H LRH+FATHLL++G DLR +Q +LGH +STTQIYT V Sbjct: 239 AGITKHMSPHVLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTYV 286 >gi|331701395|ref|YP_004398354.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929] gi|329128738|gb|AEB73291.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929] Length = 296 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 101/314 (32%), Positives = 162/314 (51%), Gaps = 39/314 (12%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L L +ERGLS T++SY D ++ AF+ + +I I Q I ++ Sbjct: 7 EDYLHYLRVERGLSDNTIKSYRQDLQEAG---AFFDKHAKSIADIDQFV---ILDYLETL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + Q ++ R +S ++ F +YL + + + +L + + KK+ +LP L Q Sbjct: 61 QRQHKARNTVIRVVSTLRRFFQYLVQFHVIVDDPMLKVDSPKKAQTLPDVLTVAQV---- 116 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 N LL K + R+ AIL LY GLR+SE ++L ++ + L+ GKGDK R Sbjct: 117 -NQLLSMPDTHKKLGLRDRAILETLYATGLRVSELVNLKLGDLHLPMNLLQTIGKGDKER 175 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----------QRYIR 248 I+P+ D+ LN IQ + + G+P + +F Q + Sbjct: 176 IIPI-----------SDVAIDWLNQYIQSTRVQLLSGRPNSEFLFLNAHGHQLTRQAIWQ 224 Query: 249 QLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 +++Y+ G+ T HTLRHSFATHLL NG DLR +Q +LGH +STTQIYT+V+ K+ Sbjct: 225 MIKKYVNQAGIKRHVTPHTLRHSFATHLLENGADLRIVQELLGHSDISTTQIYTHVSHKH 284 Query: 306 GGDWMMEIYDQTHP 319 + E+Y++ HP Sbjct: 285 ----LTEVYNKYHP 294 >gi|227112633|ref|ZP_03826289.1| site-specific tyrosine recombinase XerD [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 299 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 101/304 (33%), Positives = 159/304 (52%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ER L++ TL SY D R +LA + + + Q++ +++AF++ R Sbjct: 10 EQFLDALWLERNLAENTLASYRLDLRTLAEWLAHHDNDLLQAQSL------DLQAFLADR 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ F +YL + K ++ + + K LP+ L+E Q V Sbjct: 64 VEGGYKATSSARLLSAMRRFFQYLYREKCRSDDPSAVLSSPKLPQRLPKDLSEAQ----V 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D +L S E ++ R+ A+L +LY GLR+SE +SLT ++ Q +R+ GKG+K R Sbjct: 120 DTLLNAPSIEQP-LELRDKAMLEVLYATGLRVSELVSLTMSDVSLRQGVVRVLGKGNKER 178 Query: 199 IVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VPL I EYY P+ LN LF R + + F I+ + Sbjct: 179 LVPLGEEAVYWI-EYYLEHGRPWLLNGQTLDVLFPSNRARQMTRQTFWHRIKHYAVLASI 237 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Sbjct: 238 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQ 293 Query: 316 QTHP 319 Q HP Sbjct: 294 QHHP 297 >gi|297584490|ref|YP_003700270.1| tyrosine recombinase XerD [Bacillus selenitireducens MLS10] gi|297142947|gb|ADH99704.1| tyrosine recombinase XerD [Bacillus selenitireducens MLS10] Length = 296 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 94/296 (31%), Positives = 152/296 (51%), Gaps = 14/296 (4%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E+GLS T+++Y D +L FL ++ I + + ++ + ++ Sbjct: 12 LSVEKGLSTKTIEAYAGDLSGYLTFL----QDTYGIFSWKDVNKKHVLHYLQWMNQSGKA 67 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S+ R+LS IKS +L K E+ +++ +K LP+ L A++ V+ L Sbjct: 68 SSSISRTLSAIKSLHVFLMLEKEMDENPAVHIERPRKPAILPKTL----AISEVE-ALFS 122 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + + ID R A+L +LY G+R+SE +L +++ + ++ GKG+ RI+PL Sbjct: 123 AAEGNRPIDIRTVAMLEVLYSTGMRVSELCALELKDLNLEMGFVKCTGKGNTERIIPLGE 182 Query: 205 SVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 +AI Y D P + LF G ++ F + IR L G+ + H Sbjct: 183 FATEAIRIYLDHARPVMMKDKEHHDLFVNHHGHRISRQGFWKLIRSLATKAGIQKEISPH 242 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 TLRHSFATHLL NG DLRS+Q +LGH +STTQIYT+++ M ++Y + HP Sbjct: 243 TLRHSFATHLLENGADLRSVQEMLGHSDISTTQIYTHISQTR----MRDVYRKHHP 294 >gi|313673072|ref|YP_004051183.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939828|gb|ADR19020.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672] Length = 300 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 94/298 (31%), Positives = 160/298 (53%), Gaps = 19/298 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L+IE+ S T++SY D + + F+ +E I I +++ + +R +I+ + + Sbjct: 14 LKIEKNASDHTIRSYMNDLVELINFVK---DESIDI---KEIDFFALRGYITTLYDRSLS 67 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S++R +S IKSF K+L ++ E++ ++ KK L + N TL++ L Sbjct: 68 KSSIERKISTIKSFFKFLTQKGYLEENHARMLKFPKKEKKLFKVFNIDDLFTLLE---LP 124 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + + I R++ ++ L+YG G+R+SE + + +I +R++GKG K R++PL Sbjct: 125 DKNTPQGI--RDALLMELMYGTGVRVSELVGIKIDDIDFQGLRVRVRGKGKKERMIPLAE 182 Query: 205 ---SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 K L D P + LF G L+ +R + + + GLPL + Sbjct: 183 FHIDFIKKYLATRDDIPKSRTIKTD-KLFINKNGTSLSDRSVRRIVEKYLKMAGLPLDFS 241 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H+ RHSFATH+L +G DLR+IQS+LGH LSTTQ YT++N + +++IYD+ HP Sbjct: 242 PHSFRHSFATHMLESGADLRTIQSLLGHSSLSTTQKYTHLNLSD----ILKIYDEAHP 295 >gi|213964731|ref|ZP_03392931.1| tyrosine recombinase XerC [Corynebacterium amycolatum SK46] gi|213952924|gb|EEB64306.1| tyrosine recombinase XerC [Corynebacterium amycolatum SK46] Length = 304 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 93/301 (30%), Positives = 142/301 (47%), Gaps = 26/301 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L L R LS T+++Y D L L I +LS IRA + + Sbjct: 27 DFLDELTYSRRLSGATVRAYRADLMPLLAGL----------DHISELSTPVIRAHLGAKH 76 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + SL R + I+ F +L R+I L + KK LP L+ ++ V+ Sbjct: 77 AEGAARSSLARLTTSIRQFCSWLVARQILDADPSLRLSTPKKHQHLPEVLSPEK----VE 132 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + S E + AR+ AI+ LLY G+R+ E ++ + + + GKGDK RI Sbjct: 133 EAIEKVSSEDSAVAARDLAIVELLYATGMRVEELCKADVSDVNFSRHIISVVGKGDKQRI 192 Query: 200 VPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VP A+ + + F + + LF G+RG LNP RQ RR + Sbjct: 193 VPFGAPAEAALKGWLQVRGNFPASAQAEHALFLGVRGGRLNP-------RQARRVIHKWA 245 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + H LRHS AT ++ G DLR +Q +LGH L+TTQIYT+V++ D + E++ + H Sbjct: 246 DVSPHALRHSAATAMVEGGADLRVVQEMLGHSSLATTQIYTHVSA----DRLREVHKRAH 301 Query: 319 P 319 P Sbjct: 302 P 302 >gi|226227913|ref|YP_002762019.1| tyrosine recombinase XerC [Gemmatimonas aurantiaca T-27] gi|226091104|dbj|BAH39549.1| tyrosine recombinase XerC [Gemmatimonas aurantiaca T-27] Length = 324 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 98/311 (31%), Positives = 159/311 (51%), Gaps = 20/311 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +L +LE ER LS TLQ+Y D R+F +LA I +L+ T IR +++ Sbjct: 21 EFLTHLEKERDLSPNTLQAYRRDLREFASWLA--ATHGIAGWEWNELTRTNIRGYMAHLT 78 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + + RS+ R LS ++SF +++ + + + + + K +LP L+ QA TL+ Sbjct: 79 RRGLAKRSIARQLSAVRSFYRWMHRDERVDVNPARAVGSPKLPRTLPAYLDRTQAETLMQ 138 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNIMDDQSTLRIQGKGDKI 197 + + ++ D RN A+L L Y GLR+SE + L +++ Q ++++GKG K Sbjct: 139 HAATR-AQSLEFTDVRNLAMLELFYSSGLRLSELRGVDLADLDLVSQQ--VKVRGKGRKE 195 Query: 198 RIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGI-----RGKPLNPGVFQRYIR 248 RIVPL ++A+ Y L + + RG RG ++ Q + Sbjct: 196 RIVPLGDHAQRALRNYLVKRDALIAQASGGAVGRRVARGAVFLSERGARISARAVQHAMV 255 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 L + T H+LRH+FATHL+ G DLR++Q +LGH +STTQIYT+ + D Sbjct: 256 TLMSAVSEGADLTTHSLRHTFATHLVDAGADLRAVQELLGHASISTTQIYTHTSV----D 311 Query: 309 WMMEIYDQTHP 319 + ++Y Q HP Sbjct: 312 RLKKVYRQAHP 322 >gi|121997992|ref|YP_001002779.1| tyrosine recombinase XerC [Halorhodospira halophila SL1] gi|121589397|gb|ABM61977.1| tyrosine recombinase XerC subunit [Halorhodospira halophila SL1] Length = 304 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 94/319 (29%), Positives = 164/319 (51%), Gaps = 27/319 (8%) Query: 19 QNWLQ----NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 + WL+ +L ER L++ T + Y D F AF T+ + + +++ +RA+ Sbjct: 3 RGWLERFDRHLASERRLAEPTRRRYRQD---LDAFAAFCTDRGLA--SWAAVTHDVVRAW 57 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 ++ +R + + R+L R L+ ++SF ++L + +R + LP L+ + Sbjct: 58 VAHQRRRGLAGRTLGRQLAALRSFYRFLIREGAVAADPAAEVRPPQTRRRLPGTLDPDEV 117 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----DQSTLRI 190 L+D + + AR++A+ L+Y GLR+SE + L N+MD D + Sbjct: 118 AGLLDG-----ADPGDPLQARDAALYELIYSSGLRLSEVIGL---NMMDLDRRDGLVRVL 169 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 +GKG K R+VP+ +A+ + P + + +F G G L QR +++L Sbjct: 170 RGKGAKDRVVPVGRQALRALDAWLRHRPAWASAE-ETAIFVGRHGGRLGARTVQRRLQRL 228 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ H LRHSFATH+L + GDLR+IQ +LGH +STTQ+YT+++ ++ + Sbjct: 229 AHLRGVQRRVHPHMLRHSFATHMLESSGDLRAIQELLGHADISTTQVYTHLDFQH----L 284 Query: 311 MEIYDQTHP-SITQKDKKN 328 ++YDQ HP + +KD N Sbjct: 285 AQVYDQAHPRARRRKDPDN 303 >gi|253699136|ref|YP_003020325.1| tyrosine recombinase XerC [Geobacter sp. M21] gi|251773986|gb|ACT16567.1| tyrosine recombinase XerC [Geobacter sp. M21] Length = 293 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 105/310 (33%), Positives = 149/310 (48%), Gaps = 31/310 (10%) Query: 17 ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 E + + LE ER +S TL +Y D QFL FLA EE ++ + IR +++ Sbjct: 4 ELEQFYSYLETERNVSPHTLAAYRSDLEQFLSFLAKEREEP----RAEEVDHLAIRRYLA 59 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + + S+ R LS I++ +YL + ++ + K+ LP LN Q Sbjct: 60 QLH-KGCAKSSIGRKLSAIRALYRYLMREGKLEKNPAELVSTPKREKRLPFHLNIDQVSA 118 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTL-RIQGK 193 LV + R+ AIL LY CG+R+SE LT N+ MD + L R+ GK Sbjct: 119 LVT-----APAGGSELPLRDRAILETLYSCGIRVSE---LTGMNVGDMDLAAGLARVMGK 170 Query: 194 GDKIRIVPLLPSVRKAILEY----YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 G K R+VP+ A+ Y D P + PL RG L R + Sbjct: 171 GGKERLVPVGSCAGSALAAYLAERADPGPAE-------PLILNARGGRLTRRSVARIVDA 223 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 + + HTLRH+FATHLL G DLR+IQ +LGH LSTTQ YT+V+ D Sbjct: 224 HMLMIATMRKVSPHTLRHTFATHLLEGGADLRAIQELLGHASLSTTQKYTHVSI----DK 279 Query: 310 MMEIYDQTHP 319 +ME+YD++HP Sbjct: 280 LMEVYDKSHP 289 >gi|297539666|ref|YP_003675435.1| tyrosine recombinase XerD [Methylotenera sp. 301] gi|297259013|gb|ADI30858.1| tyrosine recombinase XerD [Methylotenera sp. 301] Length = 302 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 96/316 (30%), Positives = 161/316 (50%), Gaps = 37/316 (11%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 L E ++ +L +E GLSK TL+SY D F +L ++ +T+ +I+ + Sbjct: 11 LAELDTFIDHLWLEDGLSKNTLESYRLDLTSFAYWLTPQNKQLLTVDQ------ADIQQY 64 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 ++ + Q RS+ R ++ ++ F +YL + + + +++ K SLP++LNE++ Sbjct: 65 LAVKFPQS-QPRSISRLIASMRRFYRYLMRDNKISLDPTIQIQSPKLPRSLPKSLNEEEV 123 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 + L L+ + + R+ A+L LLY CGLR+SE + + + +RI GKG Sbjct: 124 IAL-----LNAPNIVEAAGLRDRAMLELLYACGLRVSELVGVKVTEVSVSDGVVRITGKG 178 Query: 195 DKIRIVPL-----------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 K R+VP+ L R AIL+ LC LF RG+ + F Sbjct: 179 SKTRLVPMGEEAVDWISRYLSDARSAILQK-RLCD---------ALFVTNRGEAMTRQAF 228 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 I++ G+ + H LRH+FATHLL++G DLR +Q +LGH +STTQIYT+V Sbjct: 229 WYLIKRYALLAGINKHMSPHVLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVAR 288 Query: 304 KNGGDWMMEIYDQTHP 319 + + +++ + HP Sbjct: 289 ER----LKQLHHKHHP 300 >gi|114331554|ref|YP_747776.1| tyrosine recombinase XerC [Nitrosomonas eutropha C91] gi|114308568|gb|ABI59811.1| tyrosine recombinase XerC subunit [Nitrosomonas eutropha C91] Length = 321 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 107/334 (32%), Positives = 165/334 (49%), Gaps = 25/334 (7%) Query: 2 EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT------- 54 + +LP + S LL E +L L R LS T Y D LI L T Sbjct: 6 DKQDLPALPS--LLGE---YLTYLSSTRSLSVQTQHHYRRD----LIALVRCTIAQHENG 56 Query: 55 EEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114 KI+ ++ +L +IR FI++ + + RSL R LS + F +YL + + L Sbjct: 57 NNKISDISLTRLHSHDIRHFIARLHSSGLSGRSLARMLSAWRGFYRYLIRHHHHNGNPCL 116 Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174 ++R K + LP AL+ +A L L + R+ AI L Y GLR++E Sbjct: 117 DVRVPKSPHKLPHALSPDEAAQL----LTFNPSSNDMLATRDLAIFELFYSSGLRLTELT 172 Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234 L P +I T+R+ GKG+K RIVP+ +A+ + L L + + LF R Sbjct: 173 QLQPTDIDFTGGTVRVTGKGNKTRIVPVGELALRALQAWLPLRSAWL-IPGETALFLSQR 231 Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 G+ ++P + Q + L HTLRHSFA+HLL + GDLR++Q +LGH + + Sbjct: 232 GRRIHPRTIAYRLHQRAQLQNLDSRVHPHTLRHSFASHLLQSSGDLRAVQEMLGHSSIRS 291 Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328 TQ+YT+++ ++ + +IYDQ HP +K K + Sbjct: 292 TQVYTHLDFQH----LAKIYDQAHPRARKKPKTD 321 >gi|156740074|ref|YP_001430203.1| integrase family protein [Roseiflexus castenholzii DSM 13941] gi|254799355|sp|A7NFG3|XERC_ROSCS RecName: Full=Tyrosine recombinase xerC gi|156231402|gb|ABU56185.1| integrase family protein [Roseiflexus castenholzii DSM 13941] Length = 314 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 92/290 (31%), Positives = 153/290 (52%), Gaps = 13/290 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L++L ER LS T+ +Y D QF FL + +++ ++ AF+ Sbjct: 6 EAFLRHLADERNLSANTIAAYRTDLEQFCEFL-----HGRRLFAWHDVTHDDVLAFLIDL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R ++ ++ R ++ +KSF +L R I + + K LPRAL +Q L+ Sbjct: 61 RERRYASSTVARRVAAVKSFFTFLTGRGIVQRDPTERIDSPKVDRDLPRALTPRQVDELL 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + L + E R+ A+L LLY G+R+SE ++L ++ +++ +R GK ++R Sbjct: 121 ELPLRSPTPER----IRDKAMLELLYATGVRVSELVALNVNDVDLERNEVRCIGKNGRVR 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 ++P+ S A+ EY+D+ L + + LF RGK L F ++Q LG Sbjct: 177 VLPINGSAATALEEYFDISRNQLARGSGSSTEALFLNHRGKRLTRQGFWLILKQYAEELG 236 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 L T H LRHSFA H+L+ G DLR++Q +LGH +STTQIYT++N ++ Sbjct: 237 LS-DLTPHVLRHSFAVHMLNAGFDLRAVQELLGHTSISTTQIYTHLNHES 285 >gi|148655021|ref|YP_001275226.1| phage integrase family protein [Roseiflexus sp. RS-1] gi|254799356|sp|A5URM3|XERC_ROSS1 RecName: Full=Tyrosine recombinase xerC gi|148567131|gb|ABQ89276.1| phage integrase family protein [Roseiflexus sp. RS-1] Length = 313 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 93/292 (31%), Positives = 147/292 (50%), Gaps = 13/292 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L++L ER L+ T+ +Y D QF F++ + R +S+ +I +F+ Sbjct: 6 EAFLRHLADERNLAANTIAAYRTDLDQFCDFVSARNRREW-----RDVSHDDILSFMLYL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R ++ ++ R ++ +KSF +L + + K LPRAL Q L+ Sbjct: 61 RERRYASSTVARRVAAVKSFFAFLTGSGAVPHDPTERIDSPKVDRDLPRALTPHQVDELL 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + L + E R+ A+L LLY G+R+SE ++L +I ST+R GK ++R Sbjct: 121 ELPLRSPTPER----IRDKAMLELLYATGMRVSELVALNMTDIDLVHSTVRCTGKNGRVR 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLG 255 ++P+ S A+ EY D L P LF RGK L F ++Q +G Sbjct: 177 VLPINGSAATALEEYCDNSRSQLARGSDAPIDALFLNHRGKRLTRQGFWLILKQYAEEMG 236 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 L T H LRHSFA H+L+ G DLR++Q +LGH +STTQIYT++N + Sbjct: 237 LG-ELTPHMLRHSFAVHMLNAGADLRAVQELLGHTSISTTQIYTHINHASSA 287 >gi|325290382|ref|YP_004266563.1| Tyrosine recombinase xerC [Syntrophobotulus glycolicus DSM 8271] gi|324965783|gb|ADY56562.1| Tyrosine recombinase xerC [Syntrophobotulus glycolicus DSM 8271] Length = 300 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 91/291 (31%), Positives = 149/291 (51%), Gaps = 12/291 (4%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 R LS T+ +Y+ D QF F A + + + +R +I + + + R++ Sbjct: 17 RNLSLHTISAYQSDLVQFTEFAAAELGVEFAEVELDLVDKIIVRTYIFQLADKGLSRRTV 76 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 R L+ I++F +YL + I +S +L + K +LPR L + LL + Sbjct: 77 ARKLAAIRAFFRYLSREGIVKQSPMLKINTPKLGQTLPRFLYPEHM-----EKLLAVLDD 131 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 + + R+ I+ LLYG GLR+SE + + +++ + + +RI+GKG K RIVPL Sbjct: 132 SSEMGQRDKLIIELLYGSGLRVSELVGINIEDLDLESAFVRIRGKGGKERIVPLTEPAVL 191 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 + Y D + Q L R +G ++ +R + +L + L H LRH+ Sbjct: 192 ELRRYLDRWGRSQH---QEALIRNYQGTRMSTRSVRRILDKLEKKANLNQHIYPHMLRHT 248 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 FATHLL G DLRS+Q +LGH +LS+TQIYT++ + + E+Y Q+HP Sbjct: 249 FATHLLDGGADLRSVQELLGHKKLSSTQIYTHLTREK----LREVYRQSHP 295 >gi|30248355|ref|NP_840425.1| phage integrase domain/SAM domain-containing protein [Nitrosomonas europaea ATCC 19718] gi|30138241|emb|CAD84249.1| Phage integrase:Phage integrase N-terminal SAM-like domain [Nitrosomonas europaea ATCC 19718] Length = 321 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 95/313 (30%), Positives = 152/313 (48%), Gaps = 17/313 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE------EKITIQTIRQLSYTEIRA 73 +L L R LS LT SY D + +A + ++T ++ +L +IR Sbjct: 18 EYLAYLASTRSLSLLTQHSYRRDLVALVCCIAAQHQSEHENGHEVTDASLTRLHSHDIRH 77 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 FI+ + RSL R LS + F +YL + TE+ ++R K LP AL+ + Sbjct: 78 FIAHLHHGGLSGRSLARMLSAWRGFYRYLMRHHHHTENPCQDIRVPKSPRKLPHALSPDE 137 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 A L+ + R+ A+ L Y GLR++E L P +I + +R+ GK Sbjct: 138 AAQLL------AFDPADALATRDLAMFELFYSSGLRLAELTRLQPTDIDFSEGIVRVTGK 191 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 G K RIVP+ +A+ + L L + + LF G+ ++P + Q R Sbjct: 192 GSKTRIVPVGEPALRALQAWLPLRSAWLT-SGETALFLSRHGQRIHPRTIAVRLHQRARL 250 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 L H LRHSFA+HLL + GDLR++Q +LGH + +TQ+YT+++ ++ + +I Sbjct: 251 QNLDDRVHPHALRHSFASHLLQSSGDLRAVQEMLGHSSIRSTQVYTHLDFQH----LAKI 306 Query: 314 YDQTHPSITQKDK 326 YDQ HP ++ K Sbjct: 307 YDQAHPRAKKRPK 319 >gi|332638608|ref|ZP_08417471.1| integrase/recombinase [Weissella cibaria KACC 11862] Length = 305 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 97/307 (31%), Positives = 153/307 (49%), Gaps = 15/307 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK-ITIQTIRQLSYTEIRAFISKRR 79 +L L +ER S+ T ++Y+ D +F+ FL + K + + TI Q + R F+S Sbjct: 10 FLDYLRVERQYSEDTQKAYQSDITEFVAFLTDSGDGKPVDLTTIDQY---DARVFLSMLY 66 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + R++ R +S +++F ++L++ + T + ++ K LPR EK+ L D Sbjct: 67 EKGDVSRTIARKVSSLRAFYRFLERNAVVTTNPFAGVQLKKAGQHLPRYFYEKELNKLFD 126 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 V+ TS +LYG G R+SEA LT + + I GKG+K RI Sbjct: 127 VVMADTSLLGLRNRLLLE----ILYGTGARVSEAAGLTLGMLDQAARVITITGKGNKTRI 182 Query: 200 VPLLPSVRKAILEYY-DLCPFDLNLN--IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 VP A+ Y D P L + + LF RG+ L + ++QL + GL Sbjct: 183 VPYGQYAADALASYLRDARPQLLAKSPVMHDKLFVNQRGQALTASGIEYILKQLAKKAGL 242 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 +AH RH++AT +L+NG DLR++Q +LGH LSTTQIYT+V + D + + Y Sbjct: 243 TQMISAHMFRHTYATDMLNNGADLRTVQQLLGHSSLSTTQIYTHVTT----DALQKSYRD 298 Query: 317 THPSITQ 323 P T+ Sbjct: 299 FFPRATE 305 >gi|114048718|ref|YP_739268.1| tyrosine recombinase XerD [Shewanella sp. MR-7] gi|113890160|gb|ABI44211.1| tyrosine recombinase XerD [Shewanella sp. MR-7] Length = 300 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 99/300 (33%), Positives = 155/300 (51%), Gaps = 16/300 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +L +GLS TL +Y D R F + ++ ++ I ++ ++RA+++ R Sbjct: 14 FLDDLWSSKGLSDNTLSAYRTDLRHFDRY-----QQSQGLRLI-EVGQADVRAYLAYRVQ 67 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q+ S R LS ++ F YL + K + + + K S LP +L+E Q VD Sbjct: 68 QQFARTSSARLLSSLRRFYTYLLQTKQIAGDPMALIESPKLSRQLPDSLSESQ----VDR 123 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 +L + + ++ R+ A+L LLY GLR+SE + LT + + Q +RI GKG K R+V Sbjct: 124 LLAEPNVDDP-VECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLV 182 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ + Y +L NIQ + F R + + F I+ G+ Sbjct: 183 PMGELAITEVERYLSFARHELLGNIQSDVVFPSKRSQMMTRQTFWHRIKLYASRAGIETE 242 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + E++ Q HP Sbjct: 243 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARAR----LQELHQQHHP 298 >gi|300173202|ref|YP_003772368.1| tyrosine recombinase XerC [Leuconostoc gasicomitatum LMG 18811] gi|299887581|emb|CBL91549.1| tyrosine recombinase XerC [Leuconostoc gasicomitatum LMG 18811] Length = 303 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 92/293 (31%), Positives = 153/293 (52%), Gaps = 12/293 (4%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 +E+Q + +E ER S LTL++Y D +F+IFL I +T++ L ++R ++ Sbjct: 4 REQQLYQVYIESERQYSPLTLKAYLSDIDEFVIFLT-KNGGFINFKTVQIL---DVRVYL 59 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 + +K+ ++ R +S ++ F +++ + T++ N+ K N LP E + Sbjct: 60 NDLYERKLARTTISRKISSLRMFYQFMIANQFVTDNPFDNVALRKHENHLPEFFYETEMT 119 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 TL D + + + W RN+AIL LY G R++E +L + Q + I GKG+ Sbjct: 120 TLFD--VAYNPEDLLW--QRNAAILEFLYATGARVAEIANLMTTQLDFSQRLVLIHGKGN 175 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRR 252 K R VP +A+ +Y L + Q+P +F RG+P+ + +L + Sbjct: 176 KDRYVPFGHFAAQALSQYLKETRPKL-IAKQVPHDFVFVNHRGEPITTAGITYILNELMK 234 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 L H LRH+FATHLL+NG D+R++Q +LGH LSTTQ+YT+V +N Sbjct: 235 RSTLTGKIHPHMLRHTFATHLLNNGADMRTVQELLGHVNLSTTQMYTHVTREN 287 >gi|297242750|ref|ZP_06926688.1| site-specific recombinase XerD [Gardnerella vaginalis AMD] gi|296888961|gb|EFH27695.1| site-specific recombinase XerD [Gardnerella vaginalis AMD] Length = 319 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 96/320 (30%), Positives = 167/320 (52%), Gaps = 19/320 (5%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI-TIQT 62 NN+PE + + Q ++ +++IERGLSK T+ +Y D + + +L Y E KI I T Sbjct: 12 NNIPEEFALHI----QRFIAHIDIERGLSKKTVSAYASDLQDYTCWL--YDERKIKDITT 65 Query: 63 IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122 I QL +I ++I +G R++ R L+ I + +++ ++ K++ Sbjct: 66 ISQL---DIESYIRTLNELGLGTRTVARRLASIHEWHRFMLAHGDIQADVSAQVKAPKQA 122 Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 + LP L+ ++ +++ S + I R++A+L LY G RISEA+ + ++I Sbjct: 123 DYLPDVLSIEEVNRVIEAAGNFGSSDA--ISIRDTALLEFLYATGARISEAVGVKFEDID 180 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL---FRGIRGKPLN 239 ++S +++ GKG K R+VP+ +A+ Y + +L + L F RG L+ Sbjct: 181 LNESVVKLTGKGSKQRLVPIGGCAVRALRNYMEKSRPELASKGKRELHTIFLNKRGNALS 240 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 + Q L HTLRHS ATHL++ G D+R++Q +LGH ++TTQIYT Sbjct: 241 RQSAWAIVTQAGERAKLDKPLHPHTLRHSLATHLIAGGADVRTVQELLGHASVTTTQIYT 300 Query: 300 NVNSKNGGDWMMEIYDQTHP 319 +++ D ++E Y +HP Sbjct: 301 HISP----DALVEAYVMSHP 316 >gi|289550729|ref|YP_003471633.1| Site-specific recombinase XerD [Staphylococcus lugdunensis HKU09-01] gi|289180261|gb|ADC87506.1| Site-specific recombinase XerD [Staphylococcus lugdunensis HKU09-01] Length = 295 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 99/304 (32%), Positives = 157/304 (51%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ ++IE+GLS T+ +Y D ++ ++L E I+ I + I+ + Sbjct: 6 EEYLKFIQIEKGLSPNTIGAYRRDLDKYKLYL-----ETRHIEHIDFIDRQTIQECLGYL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q +SL R +S I+SF ++ + K + + + K LP L + Sbjct: 61 IDQGSSAKSLARFISTIRSFHQFALREKYAAKDPTVLLETPKYEKKLPDVLE-------I 113 Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 D V LL +K R+ IL L+Y G+R+SE + + +NI +R+ GKGDK Sbjct: 114 DEVVRLLEAPDLSKKNGYRDRTILELMYATGMRVSELVHIEIENINVIMGFVRVFGKGDK 173 Query: 197 IRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RI+PL +V + Y ++ P L + LF + GKPL+ + I+Q Sbjct: 174 ERIIPLGDTVIDYLKTYMKEIRPQLLKSTVTNVLFLNMHGKPLSRQGIWKMIKQYGIKSN 233 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + T HTLRHSFATHLL NG DLR++Q +LGH +STTQ+YT+V+ + +IY+ Sbjct: 234 ITKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKAQ----IRQIYN 289 Query: 316 QTHP 319 Q HP Sbjct: 290 QYHP 293 >gi|228992559|ref|ZP_04152486.1| Tyrosine recombinase xerC [Bacillus pseudomycoides DSM 12442] gi|228767193|gb|EEM15829.1| Tyrosine recombinase xerC [Bacillus pseudomycoides DSM 12442] Length = 302 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 100/313 (31%), Positives = 164/313 (52%), Gaps = 35/313 (11%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q ++ L+IER SK T+ SY+ D F+ F+ E+ I + ++Y ++R +++ Sbjct: 11 QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYVDVRLYLTTL 65 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137 +K+ +S+ R +S ++S ++L R+ E N + +L KK S+P+ L ++ Sbjct: 66 HDEKLARKSVARKVSSLRSLYRFLM-REGYREDNPFALASLPKKELSIPKFLYVEEL--- 121 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 L S + R+ A+L L+Y G+R+SE +SL +I T+ + GKG K Sbjct: 122 --EKLFEVSDVKTPLGQRDQALLELMYATGIRVSECVSLQLTDIDFSVGTILVTGKGKKQ 179 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPL-NPGVFQRYI 247 R VP + A++ Y + N QL +F +GKPL + GV RYI Sbjct: 180 RYVPFGSYAQDALITYIE------NGRKQLAKKTEEHSQMVFLNAKGKPLTDRGV--RYI 231 Query: 248 -RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 +L + L + + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ Sbjct: 232 LNELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK--- 288 Query: 307 GDWMMEIYDQTHP 319 + + +Y + HP Sbjct: 289 -ERLRSVYMKHHP 300 >gi|150009884|ref|YP_001304627.1| tyrosine type site-specific recombinase [Parabacteroides distasonis ATCC 8503] gi|256838407|ref|ZP_05543917.1| tyrosine recombinase XerD [Parabacteroides sp. D13] gi|262382840|ref|ZP_06075977.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_33B] gi|298374238|ref|ZP_06984196.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_19] gi|301312384|ref|ZP_07218300.1| tyrosine recombinase XerD [Bacteroides sp. 20_3] gi|149938308|gb|ABR45005.1| tyrosine type site-specific recombinase [Parabacteroides distasonis ATCC 8503] gi|256739326|gb|EEU52650.1| tyrosine recombinase XerD [Parabacteroides sp. D13] gi|262295718|gb|EEY83649.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_33B] gi|298268606|gb|EFI10261.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_19] gi|300829567|gb|EFK60221.1| tyrosine recombinase XerD [Bacteroides sp. 20_3] Length = 301 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 94/296 (31%), Positives = 156/296 (52%), Gaps = 12/296 (4%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E+ LS ++ +Y D + L F +EK + ++++SY +++ FI++ R I Sbjct: 15 LRLEKSLSANSIDAYLTDLDKLL---RFAEDEK---KDVKEISYDDLQQFIAQLRDIGIH 68 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 RS R +SGIKSF ++L T + + K LP L + +++D + L Sbjct: 69 PRSQARIISGIKSFYRFLLLDNYITNDPTELLESPKIGLKLPEVLTVNEINSILDTIDL- 127 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 T RN A+L +LY CGLR+SE L +I + +R++GKG K R+VP+ Sbjct: 128 ----TLPEGQRNRAMLEVLYSCGLRVSELTGLRYSDIYPKEGFIRVEGKGSKQRLVPISE 183 Query: 205 SVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 + I Y YD + + LF RG L+ + I+Q G+ + + H Sbjct: 184 VALREIKNYLYDRNSVVVKKGFEDILFLSRRGTALSRIMVFHIIKQQTEAAGIHKNVSPH 243 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T RHSFATHLL G +LR+IQ +LGH +++TT+IYT+++ + ++E + ++ P Sbjct: 244 TFRHSFATHLLEGGANLRAIQEMLGHEKITTTEIYTHIDREFLRKEILEHHPRSRP 299 >gi|82701881|ref|YP_411447.1| tyrosine recombinase XerD [Nitrosospira multiformis ATCC 25196] gi|82409946|gb|ABB74055.1| Tyrosine recombinase XerD [Nitrosospira multiformis ATCC 25196] Length = 303 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 97/308 (31%), Positives = 156/308 (50%), Gaps = 16/308 (5%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 ELL E + L +E GLS+ T++SY D QF + A + + T+ +++++ Sbjct: 9 ELLDE---FCDALWLEDGLSRNTMESYRSDLEQFGDWFARQKPDDSSFLTV---THSDLL 62 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F++ R + + + R LS +K F ++L ++ LN+ + +LP +L E Sbjct: 63 GFMTGRFSAGMKASTTSRELSSLKRFYRFLLRQGKINADPTLNIDTPRLPRNLPVSLTEA 122 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 LL T + R+ A+L +LY GLR+SE +SL I D +RI G Sbjct: 123 DV-----EALLGAPDVTFPLGLRDRAMLEVLYASGLRVSELVSLESGQISLDMGVVRIMG 177 Query: 193 KGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 KG K R+ PL + ++ Y ++ P L+ LF RG + F I++ Sbjct: 178 KGGKERLTPLGEEALEWMVRYIKEIRPGLLDGKSSNALFVTYRGAGMTRQAFWYLIKRYA 237 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 R G+ + H LRH+FATHLL++G DLR +Q +LGH +STTQIYT+V + + Sbjct: 238 RQAGITKPLSPHGLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARER----LK 293 Query: 312 EIYDQTHP 319 +I++ HP Sbjct: 294 KIHEMHHP 301 >gi|167628445|ref|YP_001678944.1| tyrosine recombinase xerd, putative [Heliobacterium modesticaldum Ice1] gi|167591185|gb|ABZ82933.1| tyrosine recombinase xerd, putative [Heliobacterium modesticaldum Ice1] Length = 328 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 97/306 (31%), Positives = 151/306 (49%), Gaps = 16/306 (5%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 ++ +L +L +ERGLS T+ +Y D FLA + I ++ ++++ + Sbjct: 24 MRHGDAFLAHLAVERGLSGNTIDAYRRDLADLAAFLA-----ERGIGDPADVTRSDLQDY 78 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 + + + + R L+ IK + +L I + + + LP LN ++ Sbjct: 79 LYHTYRRGLSAATRARRLAAIKGYFGFLFDEAIRRDDPTELIDGPRLQRLLPDVLNVEEV 138 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 L+ + + R+ A+L +Y CGLR+SE ++LT + D +R+ GKG Sbjct: 139 AALLQ------APPRTIVGLRDRAMLETMYACGLRVSELIALTLDQVRLDLGLVRVVGKG 192 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 K RIVPL AI EY L + LF RGKPL F + ++ Sbjct: 193 MKERIVPLGGLAAAAIEEYLSRTRGTLAGHGAEKHLFLNQRGKPLTRQGFWKILKAYAAE 252 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ T HTLRHSFATHLLSNG DLR++Q +LGH +STTQIYT++ + E+ Sbjct: 253 AGIAKEVTPHTLRHSFATHLLSNGADLRAVQEMLGHADVSTTQIYTHLTMGR----LREV 308 Query: 314 YDQTHP 319 YD++HP Sbjct: 309 YDRSHP 314 >gi|255530752|ref|YP_003091124.1| integrase family protein [Pedobacter heparinus DSM 2366] gi|255343736|gb|ACU03062.1| integrase family protein [Pedobacter heparinus DSM 2366] Length = 294 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 92/301 (30%), Positives = 155/301 (51%), Gaps = 12/301 (3%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L L+ E+ S T+QSY+ D QF F+ E +T ++ Y IR FI Sbjct: 4 EHFLTYLQHEKRYSSHTIQSYQTDLLQFTDFMQQTFELPLT-----EVKYVHIRNFIVAL 58 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 +I + S+ R LS ++SF KYL + + + + + ++ K LP ++E + L+ Sbjct: 59 MEDEISENSVGRKLSALRSFYKYLLRENVLSSNPMALVKAPKVPKRLPVFVDEGKLDLLL 118 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D+ + + R+ ++ L+G G+R++E LSL +I +ST+R+ GK K R Sbjct: 119 DS---EEFFDGSFPSLRDKTVIETLFGTGIRLAELLSLKETDINFYESTIRVMGKRSKER 175 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 IVP+ ++R+ Y +L N LF +G P + R +++ Y+ Sbjct: 176 IVPIGKTLREQFRVYMELKTLQNFDNKTTMLFVTDKGAAAYPKLIYRTVQRYLTYVSTQD 235 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + H LRHS+AT LL+ G DL +I+ +LGH L+ TQ+YT+ N + + IY Q H Sbjct: 236 KKSPHVLRHSYATSLLNRGADLNAIKELLGHASLAATQVYTH----NSVERLKTIYKQAH 291 Query: 319 P 319 P Sbjct: 292 P 292 >gi|261337541|ref|ZP_05965425.1| tyrosine recombinase XerD [Bifidobacterium gallicum DSM 20093] gi|270277948|gb|EFA23802.1| tyrosine recombinase XerD [Bifidobacterium gallicum DSM 20093] Length = 306 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 99/314 (31%), Positives = 151/314 (48%), Gaps = 31/314 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFISK 77 + +L ++++ERGLS+ TL +Y D Q+L FL A E I+T ++ F+ Sbjct: 8 RKFLTSMDVERGLSRATLDAYRTDLEQYLTFLDARGLNEPTRIRT------EDVEQFVQH 61 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 Q + S+ R L+ ++ F ++L + + M K LP L+ L Sbjct: 62 LDAQGLQPASIARRLACVRMFHRFLLQERAVAVDVTATMHAPKTGEHLPDVLSVDDVFQL 121 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 +D S + R+ A+L +LY G R+SEA+ L +I + +R+ GKG K Sbjct: 122 LDTAQQMAS-TGDVVATRDWALLEMLYATGARVSEAVGLNLDDIDETDRVMRLTGKGSKQ 180 Query: 198 RIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 R+VP + +A+ +Y D P L + R +R LN +R R R+ Sbjct: 181 RLVPFGSTAAQALQQYLDASRPV---LEAKAKGERELRAVWLN----KRGKRLSRQSAWE 233 Query: 257 PLSTTA-----------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 L T A HTLRHSFATHL+ G D+RS+Q +LGH + TTQIYT+V+ Sbjct: 234 VLQTAAGRAKLTRPIHPHTLRHSFATHLIQGGADVRSVQELLGHASVQTTQIYTHVSP-- 291 Query: 306 GGDWMMEIYDQTHP 319 D ++E Y HP Sbjct: 292 --DSLIEAYAMAHP 303 >gi|188534907|ref|YP_001908704.1| Tyrosine recombinase XerD [Erwinia tasmaniensis Et1/99] gi|188029949|emb|CAO97833.1| Tyrosine recombinase XerD [Erwinia tasmaniensis Et1/99] Length = 297 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 98/303 (32%), Positives = 154/303 (50%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L IER L++ T+ SY D R +LA + Q I ++RAF+++R Sbjct: 8 EQFLDALWIERNLAQNTVASYRLDLRSLCDWLACQPLSLLNAQAI------DLRAFLAQR 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K+ + + + K LP+ L+E Q L+ Sbjct: 62 LEGGYKASSSARLLSAMRRLFQYLYREKLREDDPSALLSSPKLPQRLPKDLSEAQVERLL 121 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + L I+ R+ A+L LLY GLR++E + LT +I Q +R+ GKG+K R Sbjct: 122 QSPCLEQP-----IELRDKAMLELLYATGLRVTELVGLTLSDISLRQGVVRVLGKGNKER 176 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ I ++ + P+ LN LF R K + F I+ G+ Sbjct: 177 LVPMGEEAVHWIEQFIEYGRPWLLNGQTLDVLFPSNRAKQMTRQTFWHRIKHYATLAGID 236 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Q Sbjct: 237 SDKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQ 292 Query: 317 THP 319 HP Sbjct: 293 HHP 295 >gi|332877022|ref|ZP_08444775.1| tyrosine recombinase XerD [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685130|gb|EGJ57974.1| tyrosine recombinase XerD [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 304 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 99/318 (31%), Positives = 159/318 (50%), Gaps = 28/318 (8%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY----TEEKITIQTIRQLSYTEI 71 K +++ L ++RGLS+ T SY D + + +L Y T I T+RQ Y Sbjct: 5 KTNEDFQHYLRLQRGLSENTAVSYGLDIEKLIQYLEKYNITETPNNIGEDTLRQFVYEVG 64 Query: 72 RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131 + + RS R +S +K F KY+ K + + + + K LP L+ Sbjct: 65 KG---------LNARSQARLISSLKGFFKYMMYEKNREDFPMEIIESPKIGMKLPDTLSL 115 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 ++ ++ ++ L T RN AI+ LY CGLR+SE +SL ++ ++ +R+ Sbjct: 116 QEIDAMLASIDLSTEE-----GHRNKAIIETLYACGLRVSELVSLRLSDLFFEEDFIRVM 170 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQ 249 GKG K R++P+ +K I Y D L + + +F RGK L + +RQ Sbjct: 171 GKGSKQRLIPIEHYTQKQISHYIDNQRKSLKIAKGNEDYVFLNRRGKQLTRAMIFTIVRQ 230 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 + +GL + HT RHSFATHLL NG +LR+IQ +LGH ++TT+IY +V + Sbjct: 231 VAENIGLKKKISPHTFRHSFATHLLENGANLRAIQMMLGHENITTTEIYVHVEK----SY 286 Query: 310 MMEIYDQTHP----SITQ 323 + E+ ++ HP S+TQ Sbjct: 287 LREVLEKFHPRQKMSLTQ 304 >gi|62185317|ref|YP_220102.1| site-specific tyrosine recombinase XerD [Chlamydophila abortus S26/3] gi|62148384|emb|CAH64151.1| putative site-specific recombinase [Chlamydophila abortus S26/3] Length = 299 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 103/304 (33%), Positives = 157/304 (51%), Gaps = 35/304 (11%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI-TIQTIRQLSYTEIRAFISKRRTQKI 83 L ++RGLS ++ +Y D FL KI TI +I ++S + F+ + +K Sbjct: 18 LSVDRGLSSNSISAYCQDITLFL---------KINTITSIAEISQDSVHLFVRQLHKRKE 68 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 + +L R L +K F ++LK+ K+ ++ + K LP L ++ L+ + Sbjct: 69 AEATLARRLIALKVFFRFLKEAKLLEHPPLIEHPKIWKR--LPTVLTPQEVDALL--AIP 124 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 + + I R++AIL+ LY G+R+SE L ++ DD LR+ GKG K R+VPL Sbjct: 125 KKTPTSSLISTRDTAILHTLYSTGIRVSELCGLHIGDVSDD--FLRVTGKGSKTRLVPLG 182 Query: 204 PSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKPLN-PGVFQR---YIRQLRRYLG 255 AI Y LCPF NL + + LF IRG L V++R Y +Q+ Sbjct: 183 KLASAAIDAY--LCPFRENLQKKQSEEHHLFLSIRGHKLERSCVWKRIHYYAKQVTHKRV 240 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 P H+LRH+FATHLL N DLR IQ +LGH R+++T++YT+V D +ME + Sbjct: 241 SP-----HSLRHAFATHLLDNKADLRVIQEMLGHARIASTEVYTHV----AADTLMENFL 291 Query: 316 QTHP 319 HP Sbjct: 292 SYHP 295 >gi|298346458|ref|YP_003719145.1| putative integrase/recombinase XerD [Mobiluncus curtisii ATCC 43063] gi|298236519|gb|ADI67651.1| possible integrase/recombinase XerD [Mobiluncus curtisii ATCC 43063] Length = 323 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 101/330 (30%), Positives = 158/330 (47%), Gaps = 20/330 (6%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY-TEEKIT 59 M NN + + E+ + WL + RGLS T+++Y D R+ + FL + + Sbjct: 1 MSENNPAAVFAREITADFGQWL---SVNRGLSPQTVRAYLTDLRELMTFLVDSDSGDGPA 57 Query: 60 IQTIRQ--LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117 Q +R + IRA++ + +L R ++ ++F + + R I N+R Sbjct: 58 AQQLRADLANPARIRAWLGAMSRAGMSRATLARRVASFRTFASWAQVRGIVPGDAGQNLR 117 Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW----IDARNSAILYLLYGCGLRISEA 173 + N+LP L+ A L++ E + R+ A L LLY G+R+SE Sbjct: 118 ASRPDNALPTVLSATDAAHLLETARAAAYPEASTAPNPVKLRDWAALELLYATGIRVSEL 177 Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----L 229 L NI Q T+R+ GKGDK R+VP A+ EY + L +N + P + Sbjct: 178 TGLELGNINKSQRTVRVTGKGDKQRVVPYGIPAGLALEEYLEKGRPAL-VNPEKPALNRV 236 Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289 F G +G L+ + + + +L +P H LRH+ ATHLL G DLRS+Q ILGH Sbjct: 237 FLGAKGGMLDTRIVRGMLHRLTAQAEVP-DLGPHGLRHTAATHLLDGGADLRSVQEILGH 295 Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 L+TTQ YT+++ D + +Y Q HP Sbjct: 296 ASLATTQRYTHLSM----DKLRAVYLQAHP 321 >gi|325570911|ref|ZP_08146560.1| site-specific tyrosine recombinase XerC [Enterococcus casseliflavus ATCC 12755] gi|325156315|gb|EGC68498.1| site-specific tyrosine recombinase XerC [Enterococcus casseliflavus ATCC 12755] Length = 312 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 98/307 (31%), Positives = 154/307 (50%), Gaps = 21/307 (6%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY-TEEKITIQTIRQLSYTEIRAFIS 76 ++ + + L +ERG S+ T ++Y+ D F FL E+ + ++ Y ++R ++S Sbjct: 20 QEEFFRYLIVERGYSEKTKKAYQEDMGDFFHFLKESGNEDPLAVE------YRDVRVYLS 73 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 ++ S+ R ++ ++SF ++L K +I E+ + KK+ LPR EK+ Sbjct: 74 YLTEREYSRNSISRKMASLRSFYQFLTKHEIVKENPFAYIHLKKKNAKLPRFFYEKEMDA 133 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L +V + + RN A+L +LYG GLR+SE SLT I + L I GKG+K Sbjct: 134 LFQSVA-----GDEPLQQRNQALLEVLYGSGLRVSECSSLTLGAIDWESGVLLIHGKGNK 188 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 R VP + A+ Y L N ++ LF G + + + Q+ R Sbjct: 189 DRYVPFGSYAQAAVKRYLSSGRKQLMEKQNKEHEI-LFVNHLGDGITATGIEYVLNQIIR 247 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 L H LRH+FATHLL+NG D+R++Q +LGH LSTTQIY +V D + + Sbjct: 248 KSSLDSKIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTK----DSLQK 303 Query: 313 IYDQTHP 319 Y Q HP Sbjct: 304 NYRQFHP 310 >gi|228998607|ref|ZP_04158194.1| Tyrosine recombinase xerC [Bacillus mycoides Rock3-17] gi|229006107|ref|ZP_04163795.1| Tyrosine recombinase xerC [Bacillus mycoides Rock1-4] gi|228755183|gb|EEM04540.1| Tyrosine recombinase xerC [Bacillus mycoides Rock1-4] gi|228761075|gb|EEM10034.1| Tyrosine recombinase xerC [Bacillus mycoides Rock3-17] Length = 302 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 100/313 (31%), Positives = 164/313 (52%), Gaps = 35/313 (11%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q ++ L+IER SK T+ SY+ D F+ F+ E+ I + ++Y ++R +++ Sbjct: 11 QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYVDVRLYLTTL 65 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137 +K+ +S+ R +S ++S ++L R+ E N + +L KK S+P+ L ++ Sbjct: 66 HDEKLARKSVARKVSSLRSLYRFLM-REGYREDNPFALASLPKKDLSIPKFLYVEEL--- 121 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 L S + R+ A+L L+Y G+R+SE +SL +I T+ + GKG K Sbjct: 122 --EKLFEVSDVKTPLGQRDQALLELMYATGIRVSECVSLQLTDIDFSVGTILVTGKGKKQ 179 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPL-NPGVFQRYI 247 R VP + A++ Y + N QL +F +GKPL + GV RYI Sbjct: 180 RYVPFGSYAQDALITYIE------NGRKQLAKKTEEHSQMVFLNAKGKPLTDRGV--RYI 231 Query: 248 -RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 +L + L + + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ + Sbjct: 232 LNELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKER- 290 Query: 307 GDWMMEIYDQTHP 319 + +Y + HP Sbjct: 291 ---LRSVYMKHHP 300 >gi|218778262|ref|YP_002429580.1| tyrosine recombinase XerC [Desulfatibacillum alkenivorans AK-01] gi|218759646|gb|ACL02112.1| tyrosine recombinase XerC [Desulfatibacillum alkenivorans AK-01] Length = 315 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 93/308 (30%), Positives = 152/308 (49%), Gaps = 20/308 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF------YTEEKITIQTIRQLSYTEIR 72 ++L++L ER S T +Y D R+F ++A + E ++ + L+ Sbjct: 16 DSFLESLAAERRYSPATCLAYGKDLREFFSYVAESGLQGEISPENADVERVDNLAIRGYL 75 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F+ K+ + ++ R LS ++SF ++L+KR + ++ K+ ++ L Sbjct: 76 GFLHKKNEKS----TMARKLSSLRSFYRFLEKRGRVAVNPAQSVVTPKRKKTVAAHLTVD 131 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 +A L+D++L + AR+ A+ LY G+R+SE L + TLR+ G Sbjct: 132 EAFALLDSIL-----DDSLAGARDRAMFECLYSTGIRVSELAGLNMGRVNFSGKTLRVLG 186 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLR 251 KGDK RIVP+ + I Y D + N +F G L +R + ++ Sbjct: 187 KGDKERIVPVGAKALEHIKAYRDRLAVEGPKNPDPEAVFLNKNGGRLTTRSIRRILEKIV 246 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 R +GL + H LRH+FATH+L NG DLRS+Q +LGH +STT YT+V+ D +M Sbjct: 247 RDMGLNRPLSPHGLRHTFATHMLDNGADLRSVQELLGHASISTTGRYTHVSI----DRLM 302 Query: 312 EIYDQTHP 319 YD+ HP Sbjct: 303 AAYDKAHP 310 >gi|149177593|ref|ZP_01856195.1| integrase/recombinase [Planctomyces maris DSM 8797] gi|148843573|gb|EDL57934.1| integrase/recombinase [Planctomyces maris DSM 8797] Length = 313 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 107/326 (32%), Positives = 166/326 (50%), Gaps = 26/326 (7%) Query: 9 IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68 + S +L ++L+ L+IER S LTL+SY D + +L TE + + Q+ Sbjct: 7 VRSIDLHDAIDHFLRYLQIERNSSDLTLKSYAEDLESLVEYL---TEYEGALLPPDQIGI 63 Query: 69 TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 +E+R +++ + ++ R L+ ++SF +Y + + + +R + LP Sbjct: 64 SELRRYVAYLHECQYEKTTIARRLACLRSFFRYCCREGYSKTNPAKPLRTPRTGRKLPHF 123 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 L Q TL L + + R+ AIL LY GLR+SE ++L + D + + Sbjct: 124 LTTDQIGTL-----LEAPPANQKMGLRDRAILETLYSAGLRVSELVALNVSDWDQDANII 178 Query: 189 RIQGKGDKIRIVPLLPSVRKAI---LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245 R+ GKG K RI P+ KA+ LE + P + L L R L + R Sbjct: 179 RVLGKGRKERIAPIGSFAAKALTHWLEEREAKPGAHPDSDALFLNR------LKTRLTSR 232 Query: 246 YI-RQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + R L +YL GL T+ HTLRH+FATHLL G DLRS+Q +LGH L+TTQIYT+V Sbjct: 233 SVGRMLEKYLLQTGLDKKTSPHTLRHTFATHLLDGGADLRSVQELLGHKSLTTTQIYTHV 292 Query: 302 NSKNGGDWMMEIYDQTHPSITQKDKK 327 ++K ++E Y++ HP Q+ KK Sbjct: 293 STKR----LLETYEKAHPH-AQRSKK 313 >gi|228470587|ref|ZP_04055444.1| tyrosine recombinase XerD [Porphyromonas uenonis 60-3] gi|228307714|gb|EEK16690.1| tyrosine recombinase XerD [Porphyromonas uenonis 60-3] Length = 309 Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 93/294 (31%), Positives = 153/294 (52%), Gaps = 18/294 (6%) Query: 15 LKERQNWLQN----LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70 L+ RQ +Q L +E+ LS ++ SY D + ++ ++R+++ Sbjct: 3 LEPRQQLIQRYKTYLRLEQHLSDNSIDSYLYDVDKLYTYIGDMG------LSLREVTLQH 56 Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK-KRKITTESNILNMRNLKKSNSLPRAL 129 + F + I RSL R LSG+KSF ++L + +I + ++ ++ +P+ L Sbjct: 57 LNNFAAHLLDLGISMRSLARVLSGVKSFFRFLSLEEEIERDPT-----DMLQTPPIPKKL 111 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 E L +D+ LL E + +R++AI+ +LY CGLR+SE LT ++ D+ L Sbjct: 112 PEVLTLAEIDS-LLGAIDEERPEASRDTAIIEVLYSCGLRVSELCGLTYSDVFLDEGYLH 170 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 + GKG K R+VP+ P + Y D C ++ +F RG+P++ IR Sbjct: 171 VWGKGRKERLVPMSPKAVSDVQRYLNDPCRYNAKPEYDQYIFISRRGQPISRITVFCLIR 230 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 L G+ + HTLRHSFATHLL G DL +IQ ++GH ++TT+IYT+V+ Sbjct: 231 TLAELAGIHKEISPHTLRHSFATHLLEGGADLHAIQLMMGHESIATTEIYTHVD 284 >gi|269467899|gb|EEZ79638.1| site-specific recombinase XerC [uncultured SUP05 cluster bacterium] Length = 292 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 87/295 (29%), Positives = 154/295 (52%), Gaps = 20/295 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L++ERG + T Q+Y D ++ L F + E+ LS + F+ R Q I Sbjct: 12 LKVERGYALNTQQAYARDLQKLLAFTQTQSVERWA-----SLSSENLNLFVMTMRHQNIS 66 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 R+++R LS I+ FL YL + + + +++ K + SLP+ L+ ++ + ++ Sbjct: 67 GRTIRRHLSSIRGFLSYLVNQGLLEVNCAQGLQSPKVAKSLPKTLDYERLVQML------ 120 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 T + + + R++A++ +LY CGLR+SE + L +++ Q LR+ GKG K+R PL Sbjct: 121 TPKSSAFSELRDAAMVEVLYSCGLRVSELVGLDIEDVDASQGFLRVMGKGSKVRYTPLGE 180 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 S +K+I Y + LF R + ++ Q I+ +G+ ++ H Sbjct: 181 SAQKSINRYLQKTS-----HTNKALFVNNRQERISTRTVQNIIKNRALSVGIKVNVHPHM 235 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LRH+ ATH L + DLRS+Q LGH + +TQ+YT+++ + ++YD+ HP Sbjct: 236 LRHAAATHFLQSSHDLRSVQEFLGHKSIKSTQVYTHLDFLE----LSKVYDKCHP 286 >gi|116747518|ref|YP_844205.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB] gi|189030087|sp|A0LEB8|XERC_SYNFM RecName: Full=Tyrosine recombinase xerC gi|116696582|gb|ABK15770.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB] Length = 328 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 97/309 (31%), Positives = 151/309 (48%), Gaps = 24/309 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RR 79 ++ +L ERGLS T+++Y D QF + + Q+ IR +++ + Sbjct: 25 FIAHLRHERGLSAETVRAYAGDLDQFREHM--NATAGTADPRLSQVDADAIRGYLAALHK 82 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 T+K R+ R LS ++SF +L R++ E+ + K +P L L+D Sbjct: 83 TRKKTSRA--RKLSTLRSFYHFLNDRELVRENPAALVAYPKLGTKIPSFLGVDDVFHLLD 140 Query: 140 NVLLHTSHE-TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 ++ + W RN A+ +Y G+R+SE + ++ + +R+ GKG K R Sbjct: 141 SLNAGAARAGASWRRCRNWALFECMYSTGVRVSELAGMDESDVDFHEGMVRVLGKGSKER 200 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP--------LFRGIRGKPLNPGVFQRYIRQL 250 IVP+ A+ Y + L+ Q P LFR RG+ L R +R Sbjct: 201 IVPVGGKALDAVKLYLRV------LDSQFPEARRMGSALFRNARGRRLTTRSVHRLLRME 254 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 R GL + H LRH+FATHLL++G DLR+IQ +LGH LSTTQ YT+V+ D + Sbjct: 255 LRRCGLWQHLSPHGLRHTFATHLLNSGADLRAIQEMLGHSNLSTTQRYTHVHV----DQL 310 Query: 311 MEIYDQTHP 319 M++YD HP Sbjct: 311 MKVYDAAHP 319 >gi|294054307|ref|YP_003547965.1| tyrosine recombinase XerD [Coraliomargarita akajimensis DSM 45221] gi|293613640|gb|ADE53795.1| tyrosine recombinase XerD [Coraliomargarita akajimensis DSM 45221] Length = 312 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 96/306 (31%), Positives = 155/306 (50%), Gaps = 16/306 (5%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 + +PE L++ +++L LE+ERGL+ T+QSY D QF FL + I + Sbjct: 7 DTIPE----NLVEAVESFLVWLELERGLATNTVQSYAQDLCQFASFL-----HRAGIGSW 57 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 + + ++ A+ ++ S R LS ++ F ++L + +I + + K+ Sbjct: 58 QAVEAEQVSAWTAELAV-GYARSSQARKLSAVRMFARHLVREQIRADDFTELVSAPKQRR 116 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 SLP L+ ++ L++ + T H R+ AIL L Y GLR+SE L Q++ Sbjct: 117 SLPEVLSREEVDLLLNAPSMSTPH-----GLRDRAILELFYSSGLRVSELCGLPLQSVNL 171 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGV 242 D+ LR+ GKG K R+VP+ + A+ +Y + + +F RG+ ++ + Sbjct: 172 DEGFLRVYGKGSKERVVPIGAAAVAALKDYLAVGRSQFVQAKTGSEVFLSQRGQAISRKM 231 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 I+Q +G+ H LRHSFATHLL G DLR+IQ +LGH +STTQIYT V Sbjct: 232 VWVMIKQHATKVGIKKPIKPHLLRHSFATHLLEGGADLRAIQEMLGHADISTTQIYTAVQ 291 Query: 303 SKNGGD 308 + D Sbjct: 292 ANRLAD 297 >gi|300773591|ref|ZP_07083460.1| tyrosine recombinase XerD [Sphingobacterium spiritivorum ATCC 33861] gi|300759762|gb|EFK56589.1| tyrosine recombinase XerD [Sphingobacterium spiritivorum ATCC 33861] Length = 297 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 91/310 (29%), Positives = 166/310 (53%), Gaps = 29/310 (9%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 ++++ + L++ERGL+ ++++Y D + +F T +++T+ QLS ++ F+ Sbjct: 7 KKDFKRYLQLERGLAPHSIEAYLNDISKLEVFC---TNQQLTVN---QLSVDHLQEFLVW 60 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 T I + R +SG+K+F YL+ + T++ +++ + S +P LN ++ L Sbjct: 61 LNTFNISPYTQSRLISGLKAFFGYLQLEGLITKNPAELIQSPRLSRKIPVVLNIEEIDQL 120 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 + + L T+ RN AIL +LYGCGLR+SE ++L N+ ++++GKG+K Sbjct: 121 IGALDLSTTD-----GMRNKAILEILYGCGLRVSELVNLRISNLFLHIDFIKVEGKGNKE 175 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI--------RGKPLNPGVFQRYIRQ 249 R++P+ K + Y + + +Q P+ G RG L+ + I+ Sbjct: 176 RLIPIGQHAIKYLNIYLN------EIRVQQPVKAGFEDYVFLNKRGTSLSRVMIFLIIKD 229 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 L GL + HT RHSFA+HL+ G DLR++Q +LGH ++TT+IYT+++ D+ Sbjct: 230 LAAKTGLQKEISPHTFRHSFASHLVEGGADLRAVQDMLGHESITTTEIYTHIDR----DY 285 Query: 310 MMEIYDQTHP 319 + + Q HP Sbjct: 286 LHAVITQYHP 295 >gi|269103442|ref|ZP_06156139.1| site-specific recombinase XerD [Photobacterium damselae subsp. damselae CIP 102761] gi|268163340|gb|EEZ41836.1| site-specific recombinase XerD [Photobacterium damselae subsp. damselae CIP 102761] Length = 298 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 95/303 (31%), Positives = 158/303 (52%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + +ERGLS+ TL SY D + ++++ E K+ +++I S +++ + Sbjct: 9 ERFLDAMWMERGLSENTLASYRNDLTKLMMWM---KEHKLVLESI---SADDLQRYQQWL 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q S R +S I+ +YL + KI + + + K LP+ ++E Q Sbjct: 63 FDQDYKQTSRARMVSAIRRVFQYLHREKIRVDDPSAMLISPKLPKRLPKDISEAQV---- 118 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + LL + I+ R+ A+L LLY GLR++E +SLT +NI Q +R+ GKGDK R Sbjct: 119 -DALLDAPNVDDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVVGKGDKER 177 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ + I ++ P L +F R + + F I+ G+ Sbjct: 178 LVPMGENAVDWIEQFLAQGRPMLLGEKSSDVVFPSKRAQQMTRQTFWHRIKHYAVLAGID 237 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 T + H +RH+FATHLL+ G DLR +Q +LGH LSTTQIYT+V ++ + ++++Q Sbjct: 238 ADTLSPHVMRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHEQ 293 Query: 317 THP 319 HP Sbjct: 294 HHP 296 >gi|163791334|ref|ZP_02185747.1| site-specific recombinase, phage integrase family protein [Carnobacterium sp. AT7] gi|159873413|gb|EDP67504.1| site-specific recombinase, phage integrase family protein [Carnobacterium sp. AT7] Length = 299 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 96/302 (31%), Positives = 153/302 (50%), Gaps = 17/302 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +LQ L ER S+LT ++YE D F FL + + T++ ++R ++ + Sbjct: 10 FLQYLITERHYSELTKKAYEEDITHFESFLNQTGDTNFSNVTLQ-----DVRIYLGELNE 64 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q + S+ R +S +++F ++L K ++ ++ + KK+ LP+ EK+ L + Sbjct: 65 QGLSRNSISRKISSMRAFYQFLLKNQLVEDNPFSYIHLKKKTLRLPKFFYEKEMDALFEA 124 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 V K +D RN AIL +LYG G+R+SE + ++I D S L I GKG+K R V Sbjct: 125 V-----KGEKPLDFRNEAILEILYGTGIRVSECSGIQLKDIDFDLSVLLIHGKGNKERYV 179 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 P A+ +Y + L + LF G P+ + + Q+ + L Sbjct: 180 PFGHYAAVAMRDYMEKSRTPLMAKYKKSHDLLFVNHHGDPITSTGIEYVLNQVIKKSSLT 239 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 H LRHSFATHLL+NG D+R++Q +LGH LS+TQIY +V + + + Y Q Sbjct: 240 SDIHPHMLRHSFATHLLNNGADMRTVQELLGHASLSSTQIYAHVTK----ERLQKNYRQF 295 Query: 318 HP 319 HP Sbjct: 296 HP 297 >gi|172057038|ref|YP_001813498.1| tyrosine recombinase XerD [Exiguobacterium sibiricum 255-15] gi|171989559|gb|ACB60481.1| tyrosine recombinase XerD [Exiguobacterium sibiricum 255-15] Length = 294 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 95/301 (31%), Positives = 153/301 (50%), Gaps = 14/301 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + ++ L IER +S T +Y D Q+L L E+ I + +++ I I Sbjct: 6 ETFIDYLVIERQMSANTAAAYRNDLNQYLTTL-----EQQGISSAEEVTRHHIVLHIESL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + +++RS S I+SF ++L +R+I ++ K LP ++ + L+ Sbjct: 61 LQAQKSRATVRRSTSSIRSFHQFLVERQIVRHDPSRHLDLPKPDKKLPVVWSQTDIVRLL 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D+V+ + R++A+L LLYG G+R+SE L LT ++ + L GKG+K R Sbjct: 121 DSVV-----GNDPLVRRDAAMLELLYGTGMRVSELLQLTLSDLQLELGYLSCLGKGNKTR 175 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 I+P+ + ++ Y +L L +F RG L+ F + I++ + G+ Sbjct: 176 IIPISQTAIDSVSVYLELARNSLGGRQTDYVFLNSRGDRLSRQGFWKMIKRRAKEAGIEK 235 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 T H LRHSFATHLL NG DLR +Q +LGH LSTTQ+YT+VN + ++Y H Sbjct: 236 DITPHVLRHSFATHLLENGADLRVVQEMLGHADLSTTQMYTHVNKAR----LHDVYKNHH 291 Query: 319 P 319 P Sbjct: 292 P 292 >gi|315658225|ref|ZP_07911097.1| tyrosine recombinase XerD [Staphylococcus lugdunensis M23590] gi|315496554|gb|EFU84877.1| tyrosine recombinase XerD [Staphylococcus lugdunensis M23590] Length = 295 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 99/304 (32%), Positives = 157/304 (51%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ ++IE+GLS T+ +Y D ++ ++L E I+ I + I+ + Sbjct: 6 EEYLKFIQIEKGLSPNTIGAYRRDLDKYKLYL-----ETRHIEHIDFIDRQTIQECLGYL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q +SL R +S I+SF ++ + K + + + K LP L + Sbjct: 61 IDQGSSAKSLARFISTIRSFHQFALREKYAAKDPTVLLETPKYEKKLPDVLE-------I 113 Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 D V LL +K R+ IL L+Y G+R+SE + + +NI +R+ GKGDK Sbjct: 114 DEVVRLLEAPDLSKKNGYRDRTILELMYATGIRVSELVHIEIENINVIMGFVRVFGKGDK 173 Query: 197 IRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RI+PL +V + Y ++ P L + LF + GKPL+ + I+Q Sbjct: 174 ERIIPLGDTVIDYLKTYMKEIRPQLLKSTVTNVLFLNMHGKPLSRQGIWKMIKQYGIKSN 233 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + T HTLRHSFATHLL NG DLR++Q +LGH +STTQ+YT+V+ + +IY+ Sbjct: 234 ITKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKAQ----IRQIYN 289 Query: 316 QTHP 319 Q HP Sbjct: 290 QYHP 293 >gi|114319227|ref|YP_740910.1| tyrosine recombinase XerC [Alkalilimnicola ehrlichii MLHE-1] gi|114225621|gb|ABI55420.1| tyrosine recombinase XerC [Alkalilimnicola ehrlichii MLHE-1] Length = 304 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 92/301 (30%), Positives = 158/301 (52%), Gaps = 15/301 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L +L ERGLS TLQ+Y+ D +F + A E + + +S +IR F + R Sbjct: 9 RHFLHHLRYERGLSPHTLQAYQRDLTRFHHWCA---ENGLADRDA--VSAHDIRRFAAAR 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q + S++R+LS ++S +YL + T + + ++ LP L+ +A L+ Sbjct: 64 HRQGLAPGSVQRTLSSLRSLFRYLVREGRLTGNPAEGVAAPRRPRRLPGVLSPDEAARLL 123 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + S E + R+ A+ L+Y GLR++EA+ L + + + + GKG K R Sbjct: 124 EG-----SPEDDPLALRDRALYELIYSSGLRLAEAVGLDLGRLDLTEGLVEVVGKGAKTR 178 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VP+ R+A+ + + P L + +F RG L+ Q + +L G+ Sbjct: 179 RVPVGGKAREALQAWLAVRPA-LAGADEPAVFVSQRGGRLSARSVQARLARLATLSGVGR 237 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 H LRHSFA+HLL + GDLR++Q +LGH ++TTQ+YT+++ ++ + +YDQ H Sbjct: 238 PVHPHMLRHSFASHLLESSGDLRAVQELLGHADIATTQVYTHLDFQH----LARVYDQAH 293 Query: 319 P 319 P Sbjct: 294 P 294 >gi|222112165|ref|YP_002554429.1| tyrosine recombinase xerc [Acidovorax ebreus TPSY] gi|221731609|gb|ACM34429.1| tyrosine recombinase XerC [Acidovorax ebreus TPSY] Length = 323 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 96/336 (28%), Positives = 157/336 (46%), Gaps = 30/336 (8%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 N P V+ L E +L+++ +E+ L+ TL Y D ++ A + + + Sbjct: 2 NGTP--VALHLPPEALQYLEHVRVEKRLAARTLTLYTLDLQRLAAMAA-----GVDLPLL 54 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 R L+ IR F+++ R + LSG + F + ++ + + + ++R K Sbjct: 55 R-LTSAHIRRFVAQMHAGGRSGRGIALILSGWRGFYTWAARQGLVPHNPVQDVRAPKAPK 113 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNI 181 LP+AL +A+ L ++ + W++AR++AI+ LLYGCGLR+ E L + P Sbjct: 114 PLPKALPVDEAVRLAEH---QETGADPWLEARDAAIVELLYGCGLRVGELVGLDVAPSPA 170 Query: 182 MDDQS---------TLRIQGKGDKIRIVPL--LPSVRKAILEYYDLCPFDLNLNIQL--P 228 Q + GKG K R VP+ + PF +L Sbjct: 171 AHQQGRGWVDLQAGEAHVFGKGSKRRSVPVGRAAAAALQAWLAQRALPFGAAGAARLEPA 230 Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288 LF G RG L +RQ + GL H LRHSFA+HLL + GDLR++Q +LG Sbjct: 231 LFIGRRGARLTAQSVWLRLRQRSQVAGLTTPVHPHMLRHSFASHLLQSSGDLRAVQELLG 290 Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 H ++TTQ+YT ++ ++ + +YD HP +K Sbjct: 291 HANITTTQVYTRLDFQH----LARVYDAAHPRARRK 322 >gi|262278120|ref|ZP_06055905.1| site-specific recombinase XerC [Acinetobacter calcoaceticus RUH2202] gi|262258471|gb|EEY77204.1| site-specific recombinase XerC [Acinetobacter calcoaceticus RUH2202] Length = 310 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 90/306 (29%), Positives = 167/306 (54%), Gaps = 24/306 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL+ +I+ S+ T+ +YE D + FL F + +R + +++R ++++R Sbjct: 15 WLKERKIQ-NQSEHTITAYERDVKSFLEFCDLKQID------LRNVEASDLREYLAQRVE 67 Query: 81 Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q ++ S++R L+ I+ F+K+ ++ K + + + ++ LP ++ + ++D Sbjct: 68 QDQLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILD 127 Query: 140 NVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + + + W+ R+ A+L LLY GLR++E LT ++I ++ +RI GKG+K R Sbjct: 128 QPMPEKPVDQQLWL--RDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTR 185 Query: 199 IVPLLPSVRKAILEYYDLCP-----FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 IVP ++++L + + FD N + F RG L P ++ ++ + Sbjct: 186 IVPFGKKAKESLLNWLKIYKIWKGHFDQNAFV----FISQRGGVLTPRQIEKRVKLQAQR 241 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ + H LRH FA+H+LS+ GDLRS+Q +LGH LSTTQIYT+++ D + ++ Sbjct: 242 AGVNVDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDF----DHLAQV 297 Query: 314 YDQTHP 319 YD+ HP Sbjct: 298 YDRAHP 303 >gi|9622620|gb|AAF89876.1| putative site-specific recombinase XerD [Staphylococcus aureus] Length = 295 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 102/304 (33%), Positives = 161/304 (52%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTI-RQLSYTEIRAFIS 76 + +L+ ++IE+GLS T+ +Y D +++ ++ TE I+ I I RQL + I Sbjct: 6 EEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYM---TEHHISHIDFIDRQLIQECLGHLID 62 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + ++ K S+ R +S I+SF ++ + K + + + + K LP LN + L Sbjct: 63 QGQSAK----SIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLA 118 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L L T K R+ +L LLY G+R+SE + L +N+ +R+ GKGDK Sbjct: 119 L-----LETPDLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDK 173 Query: 197 IRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RIVPL +V + + Y + + P L + LF + GKPL+ + I+Q Sbjct: 174 ERIVPLGDAVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKAN 233 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + T HTLRHSFATHLL NG DLR++Q +LGH +STTQ+YT+V+ + ++Y Sbjct: 234 IKKKLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IKKMYY 289 Query: 316 QTHP 319 HP Sbjct: 290 PFHP 293 >gi|241896295|ref|ZP_04783591.1| site-specific recombinase XerD [Weissella paramesenteroides ATCC 33313] gi|241870456|gb|EER74207.1| site-specific recombinase XerD [Weissella paramesenteroides ATCC 33313] Length = 302 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 99/314 (31%), Positives = 157/314 (50%), Gaps = 41/314 (13%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L L +ERGLS T SY+ D QF +L E+ T+ + + + I AF+ + Sbjct: 14 DYLHYLTVERGLSANTKHSYQQDLVQFFQYLI--AEKYDTLTVVDRFT---IMAFLGQLE 68 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + ++ R +S ++ F ++++ + T + + + + KK+ LP L ++ Sbjct: 69 QKGKSRNTIIRMVSTLRKFFEFVQMNNLITSNPMDQVDSPKKAQHLPAVLTLEEV----- 123 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 LL + RN IL ++Y GLR+SE ++L N+ D ++ GKGDK RI Sbjct: 124 EALLQVPDTNTPLGLRNRTILEVMYATGLRVSELVNLRLDNLHLDLGLIQTIGKGDKERI 183 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF--------------QR 245 VP+ V LE Y LN PL GK +P V + Sbjct: 184 VPI-GDVAVKWLENY--------LNNSRPLL----GKQQDPHVIFLNDHGHQLTRQGVWK 230 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 I+Q + G+ + HTLRHSFATH+L NG DLR +Q +LGH +STTQIYT++++K Sbjct: 231 LIKQWVKQAGITKDVSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISNKR 290 Query: 306 GGDWMMEIYDQTHP 319 + E+Y++ HP Sbjct: 291 ----LTEVYEKAHP 300 >gi|169350488|ref|ZP_02867426.1| hypothetical protein CLOSPI_01256 [Clostridium spiroforme DSM 1552] gi|169292808|gb|EDS74941.1| hypothetical protein CLOSPI_01256 [Clostridium spiroforme DSM 1552] Length = 302 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 102/315 (32%), Positives = 165/315 (52%), Gaps = 17/315 (5%) Query: 14 LLK-ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 LLK E + + Q L +E+GLSK T+ +Y D QF Y + I I ++ +R Sbjct: 2 LLKDEIEEYKQYLIVEKGLSKNTINAYIKDLNQF----ESYLDHNFQITKINDIAKEHVR 57 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK-SNSLPRALNE 131 +I K ++KI S+ R L ++ F + K + ++NI++ +L K LP L++ Sbjct: 58 LYI-KELSKKISATSINRKLVSLRMFFTFATKETVI-DTNIMSDFDLPKIDKKLPIVLSK 115 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 ++ L+D++ ++ I +RN + L+Y GLR+SE +LT ++ + L+I Sbjct: 116 EEMQELLDSIEIND-----HISSRNRCMFELMYATGLRVSELTNLTISSLNINMGYLKII 170 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 GKGDK RIVPL R + +Y + LF G L+ ++Q+ Sbjct: 171 GKGDKERIVPLSNMARNILNDYLKHYRNEFIKKDSPLLFFNNHGNKLSREECYIILKQII 230 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 + + HT+RHSFATHLL NG DLRSIQ +LGH +STT IYT+++++ + Sbjct: 231 ERTTINKKISPHTIRHSFATHLLENGADLRSIQELLGHSNISTTTIYTHISNQK----IK 286 Query: 312 EIYDQTHPSITQKDK 326 + Y HP + +K+K Sbjct: 287 KEYQLFHPRVKKKNK 301 >gi|323489572|ref|ZP_08094799.1| tyrosine recombinase xerC [Planococcus donghaensis MPA1U2] gi|323396703|gb|EGA89522.1| tyrosine recombinase xerC [Planococcus donghaensis MPA1U2] Length = 297 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 85/303 (28%), Positives = 155/303 (51%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++++ +++E+ S+ T+ YE D F +FL + IR++ Y R +++K Sbjct: 8 ESFMSYIQLEKNYSEHTVHHYEHDLADFFLFL-----NAEGVPDIREVEYIHARNYVTKL 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 K+ ++ R +S I+SF +Y + E+ ++ + KK LP+ E++ L Sbjct: 63 YDAKLSRTTVSRKISAIRSFFRYANREYGLDEAAFRSLYHPKKEERLPQFFYEEELAQLF 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 +VL + RN+A+L LLY G+R+SE +S+ ++ +++ GKG K R Sbjct: 123 KSVL-----GDDKLSIRNTALLELLYATGMRVSECVSIRLTDLDQTMQIVKVMGKGRKER 177 Query: 199 IVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +P + A LE+Y D P + LF RG+ + + + + + + Sbjct: 178 YIPYGQFAQDA-LEHYLEDARPKLMKKQDHDYLFVNSRGEAVTDRGIRHILSECMKKASV 236 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 S H +RH+FATHL++NG D+R++Q +LGH LS+TQ+YT+V ++ + Y Sbjct: 237 NSSIYPHMIRHTFATHLINNGADIRTVQELLGHSHLSSTQVYTHVTKEH----LRNTYLN 292 Query: 317 THP 319 +HP Sbjct: 293 SHP 295 >gi|283782472|ref|YP_003373227.1| tyrosine recombinase XerC [Pirellula staleyi DSM 6068] gi|283440925|gb|ADB19367.1| tyrosine recombinase XerC [Pirellula staleyi DSM 6068] Length = 323 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 95/318 (29%), Positives = 156/318 (49%), Gaps = 27/318 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFL--AFYTEEKITIQTIRQLSYTEIRAFISK 77 +L+ L +ERG ++LT +SY D +L A+ E K + +++ ++R ++S Sbjct: 7 QFLRYLVVERGAAELTSKSYREDLTSLADYLTQAYGREPKPS-----EITPLDLRGYVSA 61 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 S+ R L+ +++F K+ ++ + + +RN +K LP L + Sbjct: 62 LHEAGYAKTSIARRLASLRTFYKFAQREGMADSNPAKPLRNPRKDRKLPHFLAGDEL--- 118 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 LL R+ A+L LY GLR+SE + + +++ D+ +RI+GKG K Sbjct: 119 --GKLLEAPPADDPAGLRDRAMLETLYSAGLRVSELVGMNDEDLDLDEGVVRIRGKGSKE 176 Query: 198 RIVPLLPSVRKAI---LEYYDLCPFDLNLNIQ--------LPLFRGIRGKPLNPGVFQRY 246 R+ PL +AI L + L ++ + P+F GK L R Sbjct: 177 RLAPLGSFALRAIKKWLAHRKLASISVSSTRKSASKAGHGTPVFTNKFGKRLTTRSVARM 236 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 + + + GL L TT HTLRH+FATHLL G D+RS+Q +LGH L TTQIYT+V++ Sbjct: 237 LEKYLKLTGLDLRTTPHTLRHTFATHLLDRGADIRSVQELLGHKSLVTTQIYTHVSTA-- 294 Query: 307 GDWMMEIYDQTHPSITQK 324 + +Y++ HP K Sbjct: 295 --ALKAVYERAHPRARNK 310 >gi|257874138|ref|ZP_05653791.1| site-specific recombinase [Enterococcus casseliflavus EC10] gi|257808302|gb|EEV37124.1| site-specific recombinase [Enterococcus casseliflavus EC10] Length = 299 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 98/307 (31%), Positives = 153/307 (49%), Gaps = 21/307 (6%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY-TEEKITIQTIRQLSYTEIRAFIS 76 ++ + + L +ERG S+ T ++Y+ D F FL E+ + ++ Y ++R ++S Sbjct: 7 QEEFFRYLIVERGYSEKTKKAYQEDMNDFFHFLKESGNEDPLAVE------YRDVRVYLS 60 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + S+ R ++ ++SF ++L K +I E+ + KK+ LPR EK+ Sbjct: 61 YLTERGYSRNSISRKMASLRSFYQFLTKHEIVKENPFAYIHLKKKNAKLPRFFYEKEMDA 120 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L +V + + RN A+L +LYG GLR+SE SLT I + L I GKG+K Sbjct: 121 LFQSVA-----GDEPLQQRNQALLEVLYGSGLRVSECSSLTLGAIDWESGVLLIHGKGNK 175 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 R VP + A+ Y L N ++ LF G + + + Q+ R Sbjct: 176 DRYVPFGSYAQAAVKRYLSSGRKQLMEKQNKEHEV-LFVNHLGDGITATGIEYVLNQIIR 234 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 L H LRH+FATHLL+NG D+R++Q +LGH LSTTQIY +V D + + Sbjct: 235 KSSLDSKIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTK----DSLQK 290 Query: 313 IYDQTHP 319 Y Q HP Sbjct: 291 NYRQFHP 297 >gi|254467807|ref|ZP_05081213.1| tyrosine recombinase XerC [beta proteobacterium KB13] gi|207086617|gb|EDZ63900.1| tyrosine recombinase XerC [beta proteobacterium KB13] Length = 295 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 103/319 (32%), Positives = 171/319 (53%), Gaps = 30/319 (9%) Query: 10 VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69 +S ELL + N+++ E+ LS+LT+++Y+ D + ++ ++K+T + + Sbjct: 1 MSNELLDQFLNYIK---FEKRLSELTIKNYQNDINRLILI----NDKKLT-----EFNSE 48 Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 +IR +SK + +SL R LS +S + K ++ ++ K LP+ L Sbjct: 49 DIRLSLSKLHASGLSGKSLSRILSSWRSCFLFFNKSQLMKYDPTSGIKAPKSQKKLPQTL 108 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 + Q L++ +T +ID R+ AIL Y GLR+SE +++ +I ++ TL+ Sbjct: 109 SIDQVFNLIN------IPQTNFIDTRDRAILEFFYSSGLRLSELVNIHLSDIDTNEQTLK 162 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLP---LFRGIRGKPLNPGVFQR 245 + GKG+K RIVPL RKAI E DL N LN + LF +GK L Q Sbjct: 163 VLGKGNKFRIVPL---GRKAI-EALDLWILQRNKLNKLVDDEFLFLNQQGKKLTARAIQY 218 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 ++ + +P + H LRHSFA+H+L + DLR++Q +LGH +STTQIYT+++ ++ Sbjct: 219 RLKFWAQKNNIPENIHPHLLRHSFASHVLQSSQDLRAVQELLGHSNISTTQIYTHLDFQH 278 Query: 306 GGDWMMEIYDQTHPSITQK 324 + +IYDQ HP +K Sbjct: 279 ----LSKIYDQAHPRSKKK 293 >gi|320104451|ref|YP_004180042.1| tyrosine recombinase XerD subunit [Isosphaera pallida ATCC 43644] gi|319751733|gb|ADV63493.1| tyrosine recombinase XerD subunit [Isosphaera pallida ATCC 43644] Length = 325 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 91/301 (30%), Positives = 145/301 (48%), Gaps = 13/301 (4%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +L L E LS TL +Y D + F + + + I L ++ A++ Sbjct: 35 GFLHYLMTECRLSPGTLAAYRGD---LVKFTRWRAAREAVPRPIAALQVGDLEAYVDYLH 91 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + ++ R LS + SF +YL +E+ + + LP + + Sbjct: 92 GLGLAPATVCRHLSSLSSFFRYLAIEGRLSENRVELVTAPSLWERLPTVIGPQAV----- 146 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + LL E W R+ AIL LY G R+SE LT +++ D ++ R+ GKGD+ RI Sbjct: 147 SQLLEAPAEWGWKGRRDRAILETLYATGCRVSEVAGLTIRDLDLDSASARVVGKGDRERI 206 Query: 200 VPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VPL ++A+ + + + +F G+PL+ G R ++ R GL Sbjct: 207 VPLGQPAQRALRRWLEERPRRVQRRPQVVAVFVSRTGRPLDRGSIWRIVKASARLAGLSA 266 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + + HTLRHSFATHLL+ G DLR++Q +LGH +STTQIYT V ++E++ + H Sbjct: 267 TVSPHTLRHSFATHLLAGGADLRAVQELLGHASISTTQIYTRVEVSR----LLEVHAKFH 322 Query: 319 P 319 P Sbjct: 323 P 323 >gi|86142675|ref|ZP_01061114.1| putative tyrosine recombinase [Leeuwenhoekiella blandensis MED217] gi|85830707|gb|EAQ49165.1| putative tyrosine recombinase [Leeuwenhoekiella blandensis MED217] Length = 298 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 95/289 (32%), Positives = 150/289 (51%), Gaps = 18/289 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L+IERGLS+ T+ +Y D + + ++ ++ E I ++ +++ FI +++ Sbjct: 14 LKIERGLSENTVVNYGLDISKLIKWIDEHSVEASPISITKE----QLQDFIYTY-AKELT 68 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S R +SG+K + +YL ++ + K LP L+E + ++D V L Sbjct: 69 ASSQARLISGLKGYFEYLVFEDYRKDNPTDLIEAPKVGRKLPDTLSEDEVNRIIDAVDL- 127 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 ++ RN AIL LYGCGLR+SE L+L ++ D+ + + GKGDK R VP+ P Sbjct: 128 ----SRPQGERNRAILETLYGCGLRVSEVLNLKLSDLFFDEGYILVTGKGDKQRFVPIAP 183 Query: 205 SVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 +K I Y D P NI LF RG L + ++Q + G+ Sbjct: 184 ITQKYIEIYRDQIRIHEAPKPEFKNI---LFLNRRGAQLTRAMIFTLVKQHTQKAGIKKK 240 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 + HT RHSFATHLL NG DLR+IQ +LGH ++TT++Y +V+ + D Sbjct: 241 ISPHTFRHSFATHLLQNGADLRAIQQMLGHESITTTEVYMHVDRSHLAD 289 >gi|227496090|ref|ZP_03926396.1| tyrosine recombinase [Actinomyces urogenitalis DSM 15434] gi|226834324|gb|EEH66707.1| tyrosine recombinase [Actinomyces urogenitalis DSM 15434] Length = 316 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 99/315 (31%), Positives = 158/315 (50%), Gaps = 22/315 (6%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 L + R+ +L +L +ERGLS TL +YE D ++ FL +Q + ++ ++ A Sbjct: 11 LERARRGYLAHLRVERGLSPNTLAAYERDLTRYCRFLLARG-----VQDLAAVTEADVAA 65 Query: 74 FISKRRTQKIGDRSLK-----RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 F+ RT G R+L R+++ ++ + K+L T + + LP+A Sbjct: 66 FLEAIRTGDDGGRALAASSASRTVTAVRGWHKFLLDEGNTDVDPSAAVHPPQVGRRLPKA 125 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 L+ ++ L++ S + R+ A+L LLY G RISEA+ L ++ + + Sbjct: 126 LSVEEVQALLEAASTDDSPRSL----RDRALLELLYATGARISEAVGLVIDDLDRESGCI 181 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRY 246 R+ GKG K RIVP+ A+ Y P +P +F G+PL+ Sbjct: 182 RLFGKGRKERIVPVGQYAWDALDAYLVQARPVLAAKGRGVPEVFLNTLGRPLSRQSAWGV 241 Query: 247 IRQL--RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 +RQ R LG + HTLRHSFATHLL+ G D+R +Q +LGH ++TTQIYT V + Sbjct: 242 LRQASARAGLGADKHVSPHTLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTKVTVE 301 Query: 305 NGGDWMMEIYDQTHP 319 + + E+Y +HP Sbjct: 302 H----LREVYATSHP 312 >gi|167756895|ref|ZP_02429022.1| hypothetical protein CLORAM_02444 [Clostridium ramosum DSM 1402] gi|167703070|gb|EDS17649.1| hypothetical protein CLORAM_02444 [Clostridium ramosum DSM 1402] Length = 302 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 95/302 (31%), Positives = 158/302 (52%), Gaps = 18/302 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L+ +R + T++SY+ RQ F F EE +I +SY +R +++K Sbjct: 12 YLDYLQYQRHYADKTIESYK---RQIDHFKQFLIEE--SIDDYNDVSYAMLRGYLTKLYE 66 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + ++ LS ++SF YL K ++ ++ L + + K + P L ++ L L+D+ Sbjct: 67 KNLSKTTINHKLSALRSFFNYLLKEELINDNPFLLIESQKVAKRNPDFLFPEEILGLLDS 126 Query: 141 VLLHTSHETKW-IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + ETK + RN A++ L+Y GLR SE ++L NI +Q L I GKG+K R Sbjct: 127 I------ETKDDLGIRNKAMMELMYASGLRCSEVVNLQLSNIDFNQMVLFIHGKGNKDRY 180 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLGLP 257 VP + +++Y +L + + F + G PL + + ++ R Sbjct: 181 VPFHDYAGEWLIKYIQEARENLMIKNEGHNFVFVNKFGNPLTNRGVENIVDRIMRLYDST 240 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 HT+RHSFATHLL+ G D+R++Q +LGH LSTTQIYT+++ D + E+Y + Sbjct: 241 KKIHPHTIRHSFATHLLNAGADIRTVQELLGHENLSTTQIYTHISR----DHLKEVYLKA 296 Query: 318 HP 319 HP Sbjct: 297 HP 298 >gi|254483258|ref|ZP_05096490.1| tyrosine recombinase XerC [marine gamma proteobacterium HTCC2148] gi|214036481|gb|EEB77156.1| tyrosine recombinase XerC [marine gamma proteobacterium HTCC2148] Length = 304 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 96/308 (31%), Positives = 162/308 (52%), Gaps = 19/308 (6%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 + KE ++L+++ R LS TL++Y+ D L L Y E+ I QT +L +IR Sbjct: 7 DACKEFIDYLRDV---RQLSPHTLENYQRD----LASLQRYGEQ-IKKQTAAELDEADIR 58 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 A++S+ + + S++RSLS +SF YL + + ++ +K LP+ L+ Sbjct: 59 AWVSQLHRRGLAGSSIQRSLSAARSFFNYLSRINGHPRNPAAAVQAPRKPRKLPKTLDAD 118 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 Q VD L+ + R+ A+ L Y GLR++E S+ +I L + G Sbjct: 119 Q----VDRYLMFEDDSPTAL--RDHAMAELFYSSGLRLAELNSVNINDIDRGSRLLTVTG 172 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 KG+K R VP+ + KAI ++ + P + + + LF RG+ ++ Q ++ Sbjct: 173 KGNKTRTVPVGSAALKAIDKWLTVRPDIAADEDASVALFTSNRGQRISVRNIQARLKLQG 232 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 R G+ H LRHSFA+H+L + GDLR++Q +LGH +STTQIYT+++ ++ + Sbjct: 233 RKAGMRQDVHPHMLRHSFASHMLESSGDLRAVQELLGHANISTTQIYTHLDFQH----LA 288 Query: 312 EIYDQTHP 319 ++YD HP Sbjct: 289 KVYDAAHP 296 >gi|223938389|ref|ZP_03630283.1| integrase family protein [bacterium Ellin514] gi|223892958|gb|EEF59425.1| integrase family protein [bacterium Ellin514] Length = 337 Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 103/336 (30%), Positives = 165/336 (49%), Gaps = 28/336 (8%) Query: 2 EGNNLPEI--VSFELLKERQNW----LQNLEIERGLSKLTLQSYECDTRQFLI-FLAFYT 54 EG+ PE VS + W L +L +RG S T ++Y RQ L+ F ++ Sbjct: 10 EGDPTPEPAEVSGTNSASEEKWIKTFLHHLAADRGASIYTQRNY----RQTLVEFYGWHR 65 Query: 55 EEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114 +E+ L + R ++ + +++ +++F K+L + + + S I Sbjct: 66 KERGVEPAWENLHRDDFRGYLRFLGRGNLSRAAIQLRFCALRTFYKFLIRHGVVSASPIK 125 Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVL--LHTSHE-------TKWIDARNSAILYLLYG 165 N+ K LP+ L +Q + L+ L L T + + + R+ AIL +Y Sbjct: 126 NVSLPKMEKRLPKFLTAQQMVELLGAPLKPLATPKKKGPGRPISATVCYRDVAILETIYS 185 Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225 CGLRISE LT Q+I ++ +R++GKG K R VP+ AI Y+ + + Sbjct: 186 CGLRISELCGLTAQDIDWNEQLVRVRGKGKKERQVPIGEPALTAIRNYWST--LEQSPGG 243 Query: 226 QLPLFRGI--RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283 P+F G + L+P V Q+ +++ GL S T H LRHS+ATH+L G DLRS+ Sbjct: 244 GSPVFLGETEKAAALSPRVLQQRLKKYLALAGLDPSLTPHKLRHSYATHMLDAGADLRSV 303 Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 Q +LGH L TTQ+YT+V+++ + YD HP Sbjct: 304 QELLGHAHLITTQVYTHVSTER----LKRAYDSAHP 335 >gi|254284183|ref|ZP_04959151.1| tyrosine recombinase XerD [gamma proteobacterium NOR51-B] gi|219680386|gb|EED36735.1| tyrosine recombinase XerD [gamma proteobacterium NOR51-B] Length = 299 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 97/306 (31%), Positives = 160/306 (52%), Gaps = 19/306 (6%) Query: 17 ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 E ++ L IERGLS TL +Y D RQF FL ++ I +++ ++ F++ Sbjct: 8 EIDQFIDALWIERGLSANTLAAYRRDLRQFADFL-----DERGIASLKAADAGALQGFLA 62 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 R +RS R LS ++ F +Y L++ +I + + + + SLP++++E Sbjct: 63 SRLKSGHSNRSAARFLSTLRGFYRYHLRENRIDRDPTQF-IDSPRLGRSLPKSISEAD-- 119 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 V+ +L + E ID R+ +L LLY CGLR++E L + +Q +R+ GKGD Sbjct: 120 --VERLLAAPNVEDP-IDFRDRTMLELLYACGLRVTELTGLQVSQLSLNQGVVRVVGKGD 176 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRY 253 K R++P+ + ++ P + L ++ LF RG + F I+ + Sbjct: 177 KERLIPIGEEALSWVQQFL-AGPRQVLLKERMSEVLFPSNRGGQMTRQTFWYRIKLHAKR 235 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ + HTLRH+FATHL+++G DLR +Q +LGH L+TTQIYT+V M ++ Sbjct: 236 AGIEAHLSPHTLRHAFATHLINHGADLRVVQMLLGHSDLTTTQIYTHVARHR----MQQL 291 Query: 314 YDQTHP 319 + Q HP Sbjct: 292 HAQHHP 297 >gi|325273831|ref|ZP_08140016.1| site-specific tyrosine recombinase XerD [Pseudomonas sp. TJI-51] gi|324101037|gb|EGB98698.1| site-specific tyrosine recombinase XerD [Pseudomonas sp. TJI-51] Length = 298 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 99/309 (32%), Positives = 149/309 (48%), Gaps = 32/309 (10%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKR 78 +L L +E+GLS T SY D +F + E + + R L I ++ R Sbjct: 11 QFLDALWLEKGLSDNTRVSYRSD---LALFNGWLHERSVALPDAGRDL----ILDHLAWR 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q RS R +SG++ F +YL + K+ L + + LP++L+E Sbjct: 64 LEQGYKPRSTARFISGLRGFFRYLLREKLVAIDPTLQVDMPQLGKPLPKSLSEADV---- 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL + I R+ A+L +LY CGLR++E +SL + Q LR+ GKG K R Sbjct: 120 -EALLQAPDLGEAIGQRDRAMLEVLYACGLRVTELVSLALDQVNLRQGVLRVMGKGSKER 178 Query: 199 IVPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 +VP+ +R E + P D+ LF +RG+ + F I+ Sbjct: 179 LVPMGEEAVVWLERYLRSGRAELLNGRPSDV-------LFPSLRGEQMTRQTFWHRIKHH 231 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 R G+ + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + Sbjct: 232 ARVAGIDKPLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKAR----L 287 Query: 311 MEIYDQTHP 319 +++ Q HP Sbjct: 288 QQLHAQHHP 296 >gi|253566424|ref|ZP_04843877.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|251944596|gb|EES85071.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|301165207|emb|CBW24778.1| putative tyrosine recombinase [Bacteroides fragilis 638R] Length = 317 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 94/285 (32%), Positives = 149/285 (52%), Gaps = 12/285 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + Q L++E+ LSK TL++Y D + L FL+ E I ++S T+++ F + Sbjct: 18 KKYQQYLKLEKSLSKNTLEAYLTDLEKLLSFLSAEGVE------ILEVSLTDLQRFAAGL 71 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 I RS R +SGIKSF +L + K LP L ++ ++ Sbjct: 72 HDIGIHARSQARIISGIKSFFHFLIIADYIEADPSELLEGPKIGFKLPEVLTVEEIDRII 131 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + L +K RN AIL LY CGLR+SE L ++ D+ ++++GKG K R Sbjct: 132 STIDL-----SKNEGQRNRAILETLYSCGLRVSELTGLKLSDLYFDEGFIKVEGKGSKQR 186 Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ P + I Y+ D ++ + + LF RG L+ + I++L G+ Sbjct: 187 LVPISPKAIQEIKLYFLDRNRINIKKDHEDYLFLSRRGTHLSRIMIFHLIKELADMAGIT 246 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + + HT RHSFATHLL G +LR+IQ +LGH +STT+IYT+++ Sbjct: 247 QNISPHTFRHSFATHLLEGGANLRAIQCMLGHESISTTEIYTHID 291 >gi|33599180|ref|NP_886740.1| site-specific tyrosine recombinase XerC [Bordetella bronchiseptica RB50] gi|33575226|emb|CAE30689.1| putative integrase/recombinase [Bordetella bronchiseptica RB50] Length = 326 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 95/323 (29%), Positives = 155/323 (47%), Gaps = 27/323 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +WL++L+ R S TL Y D RQ + +++ IR F+++ Sbjct: 16 DWLRHLQAHRRYSAHTLDGYTRDLRQLA------QLAAAAGLPLERVANGHIRHFVARLH 69 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q +G RSL R+L+ + F ++ + +R K LP+AL+ +Q L+D Sbjct: 70 AQGLGPRSLARALAAWRGFYQWWAPAAGLPGNPATGVRAPKAPRGLPKALSVEQTQVLLD 129 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL------TPQN-----IMDDQSTL 188 + + E + R+ A+ LLY GLR++E +SL TP+ + D + + Sbjct: 130 HAPARLATEPAAL--RDHAMFELLYSSGLRLAELVSLDLHYERTPEYESRSWLNRDDAEV 187 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL----FRGIRGKPLNPGVFQ 244 + GKG K R VP+ S A+ ++ P F G RG+ + P V Q Sbjct: 188 IVVGKGGKRRSVPVGQSALAALDKWLQARPQLAAAGAGAQDAAALFVGTRGRRIAPRVVQ 247 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + +L + GLP H LRHSFA+H+L + DLR++Q +LGH +STTQ+YT ++ + Sbjct: 248 LQLARLAQAAGLPAHVHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQVYTRLDFQ 307 Query: 305 NGGDWMMEIYDQTHPSITQKDKK 327 + + YDQ HP +K + Sbjct: 308 H----LARAYDQAHPRAGRKTSR 326 >gi|53715763|ref|YP_101755.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|60683694|ref|YP_213838.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343] gi|265767295|ref|ZP_06094961.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_16] gi|52218628|dbj|BAD51221.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|60495128|emb|CAH09949.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343] gi|263252600|gb|EEZ24112.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_16] Length = 317 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 94/285 (32%), Positives = 149/285 (52%), Gaps = 12/285 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + Q L++E+ LSK TL++Y D + L FL+ E I ++S T+++ F + Sbjct: 18 KKYQQYLKLEKSLSKNTLEAYLTDLEKLLSFLSAEGVE------ILEVSLTDLQRFAAGL 71 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 I RS R +SGIKSF +L + K LP L ++ ++ Sbjct: 72 HDIGIHARSQARIISGIKSFFHFLIIADYIEADPSELLEGPKIGFKLPEVLTVEEIDRII 131 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + L +K RN AIL LY CGLR+SE L ++ D+ ++++GKG K R Sbjct: 132 STIDL-----SKNEGQRNRAILETLYSCGLRVSELTGLKLSDLYFDEGFIKVEGKGSKQR 186 Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ P + I Y+ D ++ + + LF RG L+ + I++L G+ Sbjct: 187 LVPISPKAIQEIKLYFLDRNRINIKKDHEDYLFLSRRGTHLSRIMIFHLIKELADMAGIT 246 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + + HT RHSFATHLL G +LR+IQ +LGH +STT+IYT+++ Sbjct: 247 KNISPHTFRHSFATHLLEGGANLRAIQCMLGHESISTTEIYTHID 291 >gi|297617131|ref|YP_003702290.1| tyrosine recombinase XerC [Syntrophothermus lipocalidus DSM 12680] gi|297144968|gb|ADI01725.1| tyrosine recombinase XerC [Syntrophothermus lipocalidus DSM 12680] Length = 306 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 97/316 (30%), Positives = 156/316 (49%), Gaps = 26/316 (8%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA---FYTEEKITIQTIRQLSYTE 70 LL + +L++LEIE+G S LTL Y D +F+ A E+I + L Sbjct: 5 LLSHVKRFLEHLEIEKGASPLTLAGYRSDLERFVAHFADKRGIGPEEIGFEV---LDPRT 61 Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 +R +++ + + ++ R ++ ++SF KYL +I + + + ++ LPR L Sbjct: 62 VREYLAHLQECGLKRSTMARKVAALRSFGKYLCSSQIIEVNPVATVSTPRREKRLPRFLY 121 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 ++ LL + R+ AIL LLY G+R+ E + L + ++ +R+ Sbjct: 122 SQEV-----EALLAAPDGGDVLGLRDQAILELLYATGIRVGELVGLDLPDFDAEERFIRV 176 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNP----GVF 243 GKG K RIVP+ +A+ Y + L Q +F G L+ + Sbjct: 177 MGKGSKERIVPVGARAVEAMNRYLNSSRRVLAARKQGTENAIFLNRHGTRLSARGVRNIV 236 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 RY+ ++ L L + HTLRH+FATHLL+ G DLRS+Q +LGH RLSTTQ+YT+V + Sbjct: 237 NRYVEEI----ALRLKISPHTLRHTFATHLLNGGADLRSVQELLGHARLSTTQVYTHVTA 292 Query: 304 KNGGDWMMEIYDQTHP 319 + + IYD P Sbjct: 293 ----ERLKNIYDDKFP 304 >gi|330752024|emb|CBL80536.1| tyrosine recombinase [uncultured Flavobacteria bacterium] Length = 323 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 98/303 (32%), Positives = 160/303 (52%), Gaps = 19/303 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 QN+L+ IERGLS+ ++ +Y D + + ++ + KI+ I + + E I+K Sbjct: 36 QNYLK---IERGLSENSIANYTFDINKLVKWMVI-NDIKISPINIEKETLQEFIYTIAK- 90 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 ++ RS R +SG+K F YL + E N +L +S + R L + ++ + Sbjct: 91 ---ELNPRSQSRIISGLKGFFNYL----VFEEYRTTNPLDLIESPKIGRKLPDILSIEEI 143 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D ++ T TK RN I+ +LYGCGLR+SE ++L ++ D+ +++ GKG+K R Sbjct: 144 D-AIISTIDLTKPQGERNRGIIEVLYGCGLRVSELINLKISDLFFDEGFIKVTGKGNKQR 202 Query: 199 IVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 VP+ K I Y + + N Q LF RG L + +++L G+ Sbjct: 203 FVPIGSLTIKFIDIYRNEIRVHQVIKPNAQDTLFLNRRGNGLTRAMIFHIVKELTEKAGI 262 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + HT RHSFATHLL NG DLR+IQ +LGH ++TT+IYT+++ + + +I + Sbjct: 263 HKKISPHTFRHSFATHLLENGADLRAIQQMLGHESITTTEIYTHIDKSH----LTQIINN 318 Query: 317 THP 319 HP Sbjct: 319 FHP 321 >gi|322515725|ref|ZP_08068691.1| tyrosine recombinase XerD [Actinobacillus ureae ATCC 25976] gi|322118197|gb|EFX90503.1| tyrosine recombinase XerD [Actinobacillus ureae ATCC 25976] Length = 297 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 97/303 (32%), Positives = 155/303 (51%), Gaps = 18/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L E GLS+ T SY D +F +E T + L + ++++F+ +R Sbjct: 9 EQFLDTLWQEHGLSENTSASYRLDLERF-------SEWLPTPKAFLTLDHFDLQSFLGER 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q S R LS ++ F ++L + L + + +K +LP++L+E+Q + L+ Sbjct: 62 LEQGYKATSSARMLSCLRKFFRFLYIENYRQDDPTLTLISPRKPTNLPKSLSEEQVMDLL 121 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + ++ R+ A+L LLY GLR++E +SLT N+ Q +RI GKG+K R Sbjct: 122 D-----CPNTLDPVELRDKAMLELLYATGLRVTELVSLTTDNLNLRQGVMRIVGKGNKER 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ I E++ L NIQ + F RG + F I+ G+ Sbjct: 177 LVPIGEEASYWIQEFFQYGRAILLNNIQSDVVFPSRRGLQMTRQTFWHRIKHYAVLAGID 236 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHL+++G DLR +Q +LGH LSTTQIYT+V + ++ Q Sbjct: 237 SEKLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKAR----LKSLHQQ 292 Query: 317 THP 319 HP Sbjct: 293 FHP 295 >gi|237734604|ref|ZP_04565085.1| tyrosine recombinase xerC [Mollicutes bacterium D7] gi|229382424|gb|EEO32515.1| tyrosine recombinase xerC [Coprobacillus sp. D7] Length = 304 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 95/302 (31%), Positives = 158/302 (52%), Gaps = 18/302 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L+ +R + T++SY+ RQ F F EE +I +SY +R +++K Sbjct: 14 YLDYLQYQRHYADKTIESYK---RQIDHFKQFLIEE--SIDDYNDVSYAMLRGYLTKLYE 68 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + ++ LS ++SF YL K ++ ++ L + + K + P L ++ L L+D+ Sbjct: 69 KNLSKTTINHKLSALRSFFNYLLKEELINDNPFLLIESQKVAKRNPDFLFPEEILGLLDS 128 Query: 141 VLLHTSHETKW-IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + ETK + RN A++ L+Y GLR SE ++L NI +Q L I GKG+K R Sbjct: 129 I------ETKDDLGIRNKAMMELMYASGLRCSEVVNLQLSNIDFNQMVLFIHGKGNKDRY 182 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLGLP 257 VP + +++Y +L + + F + G PL + + ++ R Sbjct: 183 VPFHDYAGEWLIKYIQEARENLMIKNEGHNFVFVNKFGNPLTNRGVENIVDRIMRLYDST 242 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 HT+RHSFATHLL+ G D+R++Q +LGH LSTTQIYT+++ D + E+Y + Sbjct: 243 KKIHPHTIRHSFATHLLNAGADIRTVQELLGHENLSTTQIYTHISR----DHLKEVYLKA 298 Query: 318 HP 319 HP Sbjct: 299 HP 300 >gi|187734784|ref|YP_001876896.1| tyrosine recombinase XerC [Akkermansia muciniphila ATCC BAA-835] gi|187424836|gb|ACD04115.1| tyrosine recombinase XerC [Akkermansia muciniphila ATCC BAA-835] Length = 300 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 91/309 (29%), Positives = 152/309 (49%), Gaps = 20/309 (6%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA--FYTEEKITIQTIRQLSYTEIR 72 L+ Q++LQ LE+E+ S T++ Y RQF + A F E T +R + E++ Sbjct: 6 LEPEQDFLQYLEVEKQASPHTVEVYARALRQFRAWAADSFPGWENCTPDQMRDWLFQELK 65 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 + S++ + ++SF +++ +R + + + ++ +LP L Sbjct: 66 --------DEAATSSIRLRFAALRSFYRFMMRRHGLETNPMTGVSLPRRKKTLPVFLTLN 117 Query: 133 QALTLVD--NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 Q L L++ ++ W+ R++AIL L Y CG+R+SE + L ++ +++ Sbjct: 118 QMLELLELPYKTAVPANAPAWLPYRDAAILELFYSCGMRLSELVGLDVGSVDHRFRGVKV 177 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 GKG K RI+P+ A+ Y + N PLF G L+ Q + + Sbjct: 178 MGKGRKERILPVGTPALAALETYVSMACLPKNS----PLFVSRIGTRLSARSVQMMLNKY 233 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 + +P + + H +RH+FATH+L G DLRS+Q +LGH LSTTQIYT+V M Sbjct: 234 VKLSSIPFTISPHKIRHTFATHILEAGADLRSVQELLGHASLSTTQIYTHVTRAR----M 289 Query: 311 MEIYDQTHP 319 E+Y Q HP Sbjct: 290 AEVYRQAHP 298 >gi|258590894|emb|CBE67189.1| Tyrosine recombinase xerC [NC10 bacterium 'Dutch sediment'] Length = 349 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 105/334 (31%), Positives = 166/334 (49%), Gaps = 36/334 (10%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI--TIQTI------- 63 ++L++ + +L L+ ER S TL++Y D +QF FL ++ T+ + Sbjct: 23 QMLEQIEAYLLYLQAERAASPHTLKNYAIDLQQFRTFLRAGESSQLEPTVSAVERPVVRD 82 Query: 64 --------RQLSYTEI-----RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE 110 RQ+ EI RAF++ + I S+ R L+ ++SF +YL + + Sbjct: 83 TGRGDALHRQIKPGEIDVLAIRAFVADLHRRGIARSSIARKLATLRSFFRYLCREGVVAA 142 Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170 N L + LP+ L + VD LL + E AR+ AIL L Y G+R+ Sbjct: 143 ----NPAKLVSTPKLPKRLPAYLTVDEVDR-LLASPGEQDLPGARDLAILELFYASGIRL 197 Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQ 226 SE L +++ + +R++GKG K RIVP+ + ++R+ + DL + + Sbjct: 198 SELTGLDVRDVDIREGLVRVKGKGGKERIVPVGSKAIVALRRYLDRRSDLIHESKRVAPE 257 Query: 227 -LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285 + LF +G L+ R + + G+ T H LRHS+ATHLL G DLR+IQ Sbjct: 258 SVALFLNRQGGRLSQRSIARIVLKHLNQSGVGPKITPHGLRHSYATHLLQAGADLRAIQE 317 Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 +LGH RLSTTQ YT++N D +M +YD+ HP Sbjct: 318 LLGHSRLSTTQRYTHLNL----DHLMAVYDKAHP 347 >gi|300722127|ref|YP_003711410.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC 19061] gi|297628627|emb|CBJ89205.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC 19061] Length = 323 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 95/303 (31%), Positives = 156/303 (51%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + +E+ L++ TL SY D + +L Y + + +Q I E+++F+++R Sbjct: 34 EQFLDTIWLEKDLAENTLASYRLDLQALDNWLMNYGHDVLLVQVI------ELQSFLAER 87 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K+ + + K LP+ L+EKQ Sbjct: 88 VDGGYKASSSARLLSAMRRLFQYLYREKMREDDPTALLSAPKLPKRLPKDLSEKQV---- 143 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL+T + I+ R+ A+L +LY CGLR+SE + LT ++ Q +R+ GKG+K R Sbjct: 144 -EDLLNTPLTDQPIELRDKAMLEVLYACGLRVSELVGLTLSDVSLRQGVVRVVGKGNKER 202 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL + +Y + P+ LN + F RG + F I+ + Sbjct: 203 LVPLGEEAVYWLEKYLEYGRPWLLNGAVSDVFFPSKRGTQMTRQTFWHRIKHYAILAEID 262 Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + ++ Q Sbjct: 263 AERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKVLHQQ 318 Query: 317 THP 319 HP Sbjct: 319 HHP 321 >gi|317489856|ref|ZP_07948349.1| tyrosine recombinase XerD [Eggerthella sp. 1_3_56FAA] gi|325829949|ref|ZP_08163407.1| tyrosine recombinase XerD [Eggerthella sp. HGA1] gi|316911011|gb|EFV32627.1| tyrosine recombinase XerD [Eggerthella sp. 1_3_56FAA] gi|325488116|gb|EGC90553.1| tyrosine recombinase XerD [Eggerthella sp. HGA1] Length = 297 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 98/310 (31%), Positives = 156/310 (50%), Gaps = 21/310 (6%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 EL +E +L L +ERG S LT+ +Y D + + FL EK ++++ + I Sbjct: 3 ELYRE---YLAYLRVERGSSPLTVSAYAADLKDYAQFL-----EKRGVESLDDVDREVIV 54 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 A+ S + ++ R +S +K F ++L + + ++ K + LP L+ Sbjct: 55 AYESDLFGRGYAASTVDRHVSVLKGFHRFLVREGYARRNPADTIQLPKAPDRLPDVLSVA 114 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 Q + +L + + RN AIL +LYGCGLR+SE L + + ++ L I G Sbjct: 115 QV-----DAMLSRPLDEGPLALRNQAILEVLYGCGLRVSECTGLDLGDAILEEGYLHILG 169 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQ 249 KG+K RI P+ + +A+ +Y + +L + +F RG L + + Sbjct: 170 KGNKERIAPISGAALRALRDYLERGRPELVRSYAKSTSAVFLNARGGRLTRQSVHSLVAE 229 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 R++G+ + HTLRHSFATH+L+ G DLR IQ ILGH +STTQIYT+VN + Sbjct: 230 AGRFIGVA-NLHPHTLRHSFATHMLAGGADLRVIQEILGHSDISTTQIYTHVNRTH---- 284 Query: 310 MMEIYDQTHP 319 + E Y HP Sbjct: 285 IREEYLSAHP 294 >gi|309780244|ref|ZP_07674995.1| tyrosine recombinase XerC [Ralstonia sp. 5_7_47FAA] gi|308920947|gb|EFP66593.1| tyrosine recombinase XerC [Ralstonia sp. 5_7_47FAA] Length = 328 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 99/325 (30%), Positives = 163/325 (50%), Gaps = 39/325 (12%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L+ ER LS TL+SY TR+ + + + + QL IR +++ Sbjct: 22 YLDALKFERQLSPHTLESY---TRELAVLQRLGAQHAANVD-LTQLQSHHIRRMMAQLHG 77 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVD 139 + RS+ R+LS + + K++ R +N ++ +R K LP+AL+ +QA+ L++ Sbjct: 78 DGLSGRSIARALSAWRGWFKWMALRDAAVTANPVDGVRAPKSPKRLPKALSVEQAVALME 137 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----------MD-DQSTL 188 L ET R+ A+ L Y CGLR+SE +SL +++ +D + + Sbjct: 138 Q-LPGDDPET----VRDRAVNELFYSCGLRLSELVSLDMRHVKAGAYESASWLDLEAREV 192 Query: 189 RIQGKGDKIRIVPL---------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239 ++ GKG K R VP+ +A L D P D + LF RGK L Sbjct: 193 QVLGKGSKRRTVPVGTKAAEALAAWLAVRAQLARPDAAPEDAHA-----LFLSPRGKRLA 247 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 Q +++ G+P H LRHSFATH+L + GDLR++Q +LGH +++TQ+YT Sbjct: 248 QRQIQLRMKRNAIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT 307 Query: 300 NVNSKNGGDWMMEIYDQTHPSITQK 324 +++ ++ + +IYDQ HP +K Sbjct: 308 SLDFQH----LAKIYDQAHPRAKKK 328 >gi|88803246|ref|ZP_01118772.1| putative tyrosine recombinase [Polaribacter irgensii 23-P] gi|88780812|gb|EAR11991.1| putative tyrosine recombinase [Polaribacter irgensii 23-P] Length = 298 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 108/312 (34%), Positives = 156/312 (50%), Gaps = 29/312 (9%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 +KE Q +L+ IERGLSK T+ SY D + +F + + KITI I ++ I+ F Sbjct: 7 IKEYQMYLK---IERGLSKNTVDSYTKDIEKLCLF---FCKNKITISPI-NINSDLIKQF 59 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL----KKSNSLPRALN 130 I Q I RS R +SG++SF YL I E +LN +L K LP L+ Sbjct: 60 IYDIAKQ-INPRSQARIISGLRSFFDYL----IFEEYRVLNPTDLLETPKIGKKLPDTLS 114 Query: 131 EKQALTLVDNV-LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 + L + L H E RN +L +Y CGLR+SE ++L ++ ++ +R Sbjct: 115 QDDIDALFSAIDLSHPQGE------RNRTLLETMYSCGLRVSELITLKVSDLFFEEGFIR 168 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDL--CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 + GKG+K R VP+ I Y + + LF RGK L + + Sbjct: 169 VLGKGNKERYVPIHKDAESYISIYKRTIRTHIEPKKGFEDTLFLNRRGKGLTRQMIFIIL 228 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 + L + L + HTLRHSFATHLL NG DLR IQ ILGH ++TT+IY +V+ Sbjct: 229 KDLAFKIDLKKKISPHTLRHSFATHLLQNGADLRVIQQILGHESITTTEIYVHVDKT--- 285 Query: 308 DWMMEIYDQTHP 319 ++ E+ + HP Sbjct: 286 -YLKEVVETFHP 296 >gi|85859051|ref|YP_461253.1| integrase/recombinase [Syntrophus aciditrophicus SB] gi|85722142|gb|ABC77085.1| integrase/recombinase [Syntrophus aciditrophicus SB] Length = 296 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 94/314 (29%), Positives = 165/314 (52%), Gaps = 24/314 (7%) Query: 10 VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69 ++F+L+ E +L L +E+G S TL++Y D ++ + ++ I+ I ++S Sbjct: 1 MNFQLIDE---YLNYLTVEKGASHNTLEAYGRDLSRYSGLI-----QERGIKEIHEISPD 52 Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 ++ ++++ + + + S+ RSL+ ++ F K+L + K ++ + + K LP L Sbjct: 53 DVIYYMAELKRKGLSANSINRSLAALRGFYKFLLREKKIEQNPVAEIELAKVWMRLPDTL 112 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 + ++ L+ + T R++A+L L+Y GLR+SE +SLT +I L Sbjct: 113 SHEEMDQLLSQPGVRTDSAI-----RDTAMLELMYATGLRVSELISLTTGSINWQVGYLV 167 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245 +QGKG+K RIVP+ + + Y+D C N+ LF G+ + F + Sbjct: 168 VQGKGNKERIVPIGQVAYEHVRRYFDEVRPKCIRGAQTNV---LFLNKSGQGMTRQGFWK 224 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 +R+ GL HT RHSFA+HLL G DLRS+Q +LGH +STTQIYT+V ++ Sbjct: 225 LVRKYAVKAGLQKKVHPHTFRHSFASHLLEGGADLRSVQMMLGHADISTTQIYTHVTREH 284 Query: 306 GGDWMMEIYDQTHP 319 + +I+ + HP Sbjct: 285 ----LKDIHKKYHP 294 >gi|312879576|ref|ZP_07739376.1| integrase family protein [Aminomonas paucivorans DSM 12260] gi|310782867|gb|EFQ23265.1| integrase family protein [Aminomonas paucivorans DSM 12260] Length = 294 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 98/289 (33%), Positives = 136/289 (47%), Gaps = 22/289 (7%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 S+ T +Y D QF+ FL ++ ++ +R F+ S R Sbjct: 23 SENTTVNYAVDLAQFVEFLQLEG-----VEGPEGINRDRVRGFLRSLMGYGFAPTSAARK 77 Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 LS ++ F YL + + + +R K +LPRAL D V L Sbjct: 78 LSSVRGFTAYLTREGLVEQDPAAGVRGPKLPANLPRAL------AYPDVVRLLEEGPGGR 131 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211 R+ +L LLYG GLR+SEA L +++ ++ LR+ GKG K R VP V K +L Sbjct: 132 HAQRDRLMLELLYGSGLRVSEAAGLDWEDLEPEERWLRVLGKGQKGRAVPFGRGV-KELL 190 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 + + P + Q P+F G RG P + P R + Q R +GL T HTLRHSFA Sbjct: 191 QDWRPDP----VTRQGPVFPGERGAPRITPRTIHRLVTQSARRVGL-AGVTPHTLRHSFA 245 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 THLL G LR +Q +LGH L TTQ Y ++ S D M Y+Q HP Sbjct: 246 THLLEGGASLRVVQELLGHESLLTTQRYLDITS----DQMKRSYEQAHP 290 >gi|199598714|ref|ZP_03212128.1| Integrase [Lactobacillus rhamnosus HN001] gi|229552169|ref|ZP_04440894.1| integrase XerD [Lactobacillus rhamnosus LMS2-1] gi|258508373|ref|YP_003171124.1| tyrosine recombinase XerD [Lactobacillus rhamnosus GG] gi|258539584|ref|YP_003174083.1| tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705] gi|199590402|gb|EDY98494.1| Integrase [Lactobacillus rhamnosus HN001] gi|229314471|gb|EEN80444.1| integrase XerD [Lactobacillus rhamnosus LMS2-1] gi|257148300|emb|CAR87273.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus GG] gi|257151260|emb|CAR90232.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705] gi|259649687|dbj|BAI41849.1| integrase [Lactobacillus rhamnosus GG] Length = 293 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 92/302 (30%), Positives = 155/302 (51%), Gaps = 19/302 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +++ L++ERGL++ T SY+ D F+A+ +++K QT + I+AF+ + Sbjct: 7 DFIHYLDVERGLARTTQVSYQQD---LTTFMAWLSDQK---QTTFPEDFGVIQAFLKHQN 60 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 K S+ R +S ++ F ++L + + + KK+ LP L+ + Sbjct: 61 DTK-APASVSRMISALRKFYRFLLREGAIKSDPMTKIDTPKKAQHLPATLSGTEI----- 114 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + L+ TK + R+ AI L+Y GLR+SE + L + + L++ GKGDK R+ Sbjct: 115 DALMAKPDTTKPLGLRDRAIFELMYATGLRVSEVVGLRLDQLHLAMNLLQVTGKGDKERL 174 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 VP+ P + Y L + Q P +F G L + ++ +G+ Sbjct: 175 VPISPQAADWVNRYLQESRPRL-IKHQQPKAVFVNFHGHALTRQAIWKNLKAYIASVGIE 233 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T HTLRHSFAT LL NG DLR +Q +LGH +STTQIYT++++++ ++ +Y +T Sbjct: 234 KDVTPHTLRHSFATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQH----LVAVYHKT 289 Query: 318 HP 319 HP Sbjct: 290 HP 291 >gi|330936913|gb|EGH41038.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. pisi str. 1704B] Length = 298 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 101/308 (32%), Positives = 151/308 (49%), Gaps = 32/308 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISKRR 79 +L L +E+GLS T SY D +F + E + I R++ I ++ R Sbjct: 12 FLDALWLEKGLSDNTRDSYRSD---LALFNGWLQERNVDLISAGREV----ILDHLAWRV 64 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 RS R LSG++ F +YL + K+ + L + + LP++L+E Sbjct: 65 ENAYKPRSTARFLSGVRGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADV----- 119 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 LL ++ I R+ A+L +LY CGLR++E +SLT + + Q LR+ GKG K R+ Sbjct: 120 EALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERL 179 Query: 200 VPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 VP+ +R A E P D+ LF RG + F I+ Sbjct: 180 VPMGEESIVWVERYLRGARDELLGGKPSDV-------LFPSTRGDQMTRQTFWHRIKHQA 232 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 G+ S + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + Sbjct: 233 TVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----LQ 288 Query: 312 EIYDQTHP 319 E++ + HP Sbjct: 289 ELHAKHHP 296 >gi|241664950|ref|YP_002983310.1| site-specific tyrosine recombinase XerC [Ralstonia pickettii 12D] gi|240866977|gb|ACS64638.1| tyrosine recombinase XerC [Ralstonia pickettii 12D] Length = 328 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 100/325 (30%), Positives = 162/325 (49%), Gaps = 39/325 (12%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L ER LS TL+SY TR+ + + I + QL IR +++ Sbjct: 22 YLDALRFERQLSPHTLESY---TRELAVLQRLGAQHAANID-LTQLQSHHIRRMMAQLHG 77 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVD 139 + RS+ R+LS + + K++ R +N ++ +R K LP+AL+ +QA+ L++ Sbjct: 78 DGLSGRSIARALSAWRGWFKWMALRDAAVTANPVDGVRAPKSPKRLPKALSVEQAVALME 137 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----------MD-DQSTL 188 L ET R+ A+ L Y CGLR+SE +SL +++ +D + + Sbjct: 138 Q-LPGDDPET----VRDRAVNELFYSCGLRLSELVSLDMRHVKAGAYESASWLDLEAREV 192 Query: 189 RIQGKGDKIRIVPL---------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239 ++ GKG K R VP+ +A L D P D + LF RGK L Sbjct: 193 QVLGKGSKRRTVPVGTKAAQALAAWLAVRAQLAKPDAAPEDAHA-----LFLSPRGKRLA 247 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 Q +++ G+P H LRHSFATH+L + GDLR++Q +LGH +++TQ+YT Sbjct: 248 QRQIQLRMKRNAIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT 307 Query: 300 NVNSKNGGDWMMEIYDQTHPSITQK 324 +++ ++ + +IYDQ HP +K Sbjct: 308 SLDFQH----LAKIYDQAHPRAKKK 328 >gi|300718203|ref|YP_003743006.1| Tyrosine recombinase [Erwinia billingiae Eb661] gi|299064039|emb|CAX61159.1| Tyrosine recombinase [Erwinia billingiae Eb661] Length = 297 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 99/303 (32%), Positives = 160/303 (52%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L IER L++ T+ SY D L+ LA + + + + ++ +++ F+++R Sbjct: 8 EQFLDALWIERNLAENTVASYRLD----LLSLAGWLQHNES--NLLRVDAVDLQGFLAER 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K+ + + + K LP+ L+E Q + Sbjct: 62 VEGGYKATSSARLLSAMRRLFQYLYREKLREDDPSALLASPKLPQRLPKDLSEAQ----I 117 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D +L S E I+ R+ A+L LLY GLR++E +SLT N+ Q +R+ GKGDK R Sbjct: 118 DRLLQAPSVEQP-IELRDKAMLELLYATGLRVTELVSLTLNNVSLRQGVVRVIGKGDKER 176 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL I +Y + P+ LN LF R + + F I+ G+ Sbjct: 177 LVPLGEEAVHWIEQYLEYGRPWLLNGQTLDVLFPSSRAQQMTRQTFWHRIKHYATLAGID 236 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Q Sbjct: 237 SAKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQ 292 Query: 317 THP 319 HP Sbjct: 293 HHP 295 >gi|145220218|ref|YP_001130927.1| phage integrase family protein [Prosthecochloris vibrioformis DSM 265] gi|145206382|gb|ABP37425.1| phage integrase family protein [Chlorobium phaeovibrioides DSM 265] Length = 325 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 99/306 (32%), Positives = 165/306 (53%), Gaps = 32/306 (10%) Query: 31 LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90 LS+ T+ +Y D RQF L+ ++ L+ +IR F+++ + + RS+ R Sbjct: 33 LSEHTVLAYRTDIRQFFSILS-------PPDDLQLLTAADIRFFMAELIRRGLQPRSIAR 85 Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH--- 147 L+ ++SF YL++R + S + + + S+P L+ + L + V+ + Sbjct: 86 KLASVRSFFHYLQERGLLGHSVLQTLSMPRYQRSVPAFLSVSETRELFETVVPAARYRKG 145 Query: 148 ETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 E +D+ R++A L LLYGCGLRISE +L ++ +++ GKG K RIVPL Sbjct: 146 EAGLLDSFVLHRDAAALELLYGCGLRISELTALQDNDLELAGGFVKLTGKGRKQRIVPLG 205 Query: 204 PSVRKAILEYYDLCP--FDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 + A+ +Y+++ F + +L +F +GK + P + QR R +YL LP Sbjct: 206 LAAVSALKKYFEVRRNFFRMKRGTELVGNGYVFLTNKGKKIYPMLVQRMTR---KYL-LP 261 Query: 258 LST----TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 ++ H LRHSFATHLL++G DL+S+ +LGH LSTT+IYT+V+ + + E+ Sbjct: 262 VTEQKKKNPHILRHSFATHLLNSGADLQSVSEMLGHSNLSTTEIYTHVSF----ERLKEV 317 Query: 314 YDQTHP 319 Y + HP Sbjct: 318 YRKAHP 323 >gi|332527817|ref|ZP_08403855.1| tyrosine recombinase XerC subunit [Rubrivivax benzoatilyticus JA2] gi|332112212|gb|EGJ12188.1| tyrosine recombinase XerC subunit [Rubrivivax benzoatilyticus JA2] Length = 313 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 99/317 (31%), Positives = 153/317 (48%), Gaps = 29/317 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q WL +L +ER L+ TL Y R L LA +R +R ++++ Sbjct: 10 QRWLDHLGVERRLAPRTLALY----RDALGRLAASAAADGV--ELRAAQPHHVRRWMAQL 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 RT + RS+ LS + ++ + + + + ++ K LP+AL QA+ L Sbjct: 64 RTAGLAPRSIALVLSAWRGLYRWWGREGLVPANPVDGLKAPKTGKPLPKALPVDQAVALA 123 Query: 139 DNVLLHTSHETKWIDAR----NSAILYLLYGCGLRISE--ALSLTPQN-----IMDDQST 187 + HE + DAR + AI+ LLYGCGLRI E AL L P I + ++ Sbjct: 124 E-------HENEDGDARLAARDHAIVELLYGCGLRIGELLALDLAPSAGAAGWIDAEDAS 176 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 + GKG K R VP+ + L + L + LF RG+ L+ G + + Sbjct: 177 AHVLGKGRKRRSVPV-GAKALEALAAWLAVRGQLAAAGEPALFVSRRGERLSQGALRARL 235 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 +Q+ GLP H LRHS+A+HLL + GDLR++Q +LGH +STTQ+YT ++ ++ Sbjct: 236 KQIALQAGLPTHVHPHMLRHSYASHLLQSSGDLRAVQELLGHASISTTQVYTQLDFQH-- 293 Query: 308 DWMMEIYDQTHPSITQK 324 + YD HP +K Sbjct: 294 --LARAYDAAHPRAKRK 308 >gi|94266574|ref|ZP_01290258.1| Tyrosine recombinase XerD [delta proteobacterium MLMS-1] gi|93452792|gb|EAT03324.1| Tyrosine recombinase XerD [delta proteobacterium MLMS-1] Length = 325 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 97/302 (32%), Positives = 155/302 (51%), Gaps = 16/302 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +LQ L ER L+ TL +Y D F FLA I +++ +RA++ R Sbjct: 35 FLQYLAAERRLAANTLTAYHTDLLSFFDFLA-RRRPTPAISGPAEITPEHLRAYLEACRR 93 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALNEKQALTLV 138 ++I RS R LS +++F ++L++ + S +L++ K LP+ LN + Sbjct: 94 RQIAARSNARRLSALRAFFRFLRRENLIPADPSALLDLP--KPGRPLPKVLNLDEV---- 147 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 N LL + R+ A+L+LLY G+R+SE ++L P ++ LR+ GKG K R Sbjct: 148 -NQLLAGPAAATPLALRDHAMLHLLYATGMRVSELVNL-PVAAVNQAGHLRVLGKGSKER 205 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 ++P + +++ Y P L LF RG + F + IR R + Sbjct: 206 LIPFGAAAGRSLARYITQGRPRLLKKRRSDFLFVTNRGTAMTRLRFWQIIRDRARVCRID 265 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 H LRHSFATHLL +G DLR++Q++LGH ++TTQIYT+V+++ + +I+ Q Sbjct: 266 KEVGPHVLRHSFATHLLEHGADLRAVQAMLGHADIATTQIYTHVDAQR----LKKIHRQF 321 Query: 318 HP 319 HP Sbjct: 322 HP 323 >gi|145295931|ref|YP_001138752.1| site-specific tyrosine recombinase XerC [Corynebacterium glutamicum R] gi|140845851|dbj|BAF54850.1| hypothetical protein [Corynebacterium glutamicum R] Length = 315 Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 90/300 (30%), Positives = 159/300 (53%), Gaps = 21/300 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++ ++L++ G S T++ Y D L +A TI+ I S +R ++ Sbjct: 35 DFCEHLDLVVGRSAATIRGYRSD----LYAMAD------TIEDIDNFSLPTLRQWLGIAV 84 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + +L R + +K+F + +K + + K + LP+ L E+QA V+ Sbjct: 85 DEGKSRATLARRTASVKAFSSWAQKNGHLKADEAARLISPKITRDLPKILGEQQAGDFVE 144 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 N +++E +++ R+SAIL LLY G+R++E + +I D+ +R+ GKG+K R+ Sbjct: 145 NAA--STNEEEFL--RDSAILELLYATGMRVAELCGIDLPDIDYDRKMVRVLGKGNKERV 200 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 VP S KA+ + D+ D LF G+RG+ +N +R + ++ + G+ Sbjct: 201 VPFGESAHKALRNWLDV--RDEMAEDPKALFVGVRGQRINARQVRRIVDRVAKVTGVD-H 257 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H+LRH+ ATHLL G DLR +Q +LGH + TTQIYT+V++K ++E +++ HP Sbjct: 258 LSPHSLRHTAATHLLDGGADLRQVQELLGHSSMQTTQIYTHVSNKR----LLEAFNKAHP 313 >gi|222055852|ref|YP_002538214.1| tyrosine recombinase XerD [Geobacter sp. FRC-32] gi|221565141|gb|ACM21113.1| tyrosine recombinase XerD [Geobacter sp. FRC-32] Length = 295 Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 97/301 (32%), Positives = 157/301 (52%), Gaps = 17/301 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L++E+GL+K TL++Y D +L FLA + ++ + I + E A + +R Sbjct: 8 FLNYLQVEKGLTKNTLEAYSRDLSVYLDFLA--GQGRLDLDHITAMDVIEHLAGLKER-- 63 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS R+LS +K F ++L + + + + N LP L+ ++ Sbjct: 64 -GLSPRSRARALSAVKMFHRFLMVENHCPNNPAVIIEAPRSLNRLPDVLSGREV-----E 117 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 +LL ++ D R+ A+L +LY GLR+SE ++L +++ D L GKG+K R+V Sbjct: 118 LLLDSARSADLNDVRDLAMLEVLYATGLRVSELVALKLRDVNLDAGYLLTMGKGEKERLV 177 Query: 201 PLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 PL + R A EY D + ++ LF G + F I++ G+ Sbjct: 178 PLGETARLATAEYLRSARVKADRKGDCEI-LFISRLGDGMTRQAFWNIIKKRAAAAGIRK 236 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 S + H+LRHSFATHLL NG DLRS+Q +LGH LS+TQIYT+V + + +++ H Sbjct: 237 SISPHSLRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVTRER----LKQLHQDIH 292 Query: 319 P 319 P Sbjct: 293 P 293 >gi|134298963|ref|YP_001112459.1| tyrosine recombinase XerD [Desulfotomaculum reducens MI-1] gi|134051663|gb|ABO49634.1| tyrosine recombinase XerD subunit [Desulfotomaculum reducens MI-1] Length = 296 Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 95/302 (31%), Positives = 153/302 (50%), Gaps = 16/302 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++ L +ERGL++ TL SY D Q+L L +K + ++ Q I + + K + Sbjct: 7 EFIHYLAVERGLAQNTLASYRIDLSQYLDHL-----KKQGVSSLTQADRNHILSHLYKLQ 61 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 ++ R L+ +K F ++L +E +++ + K LP L+ ++ V+ Sbjct: 62 KDGKAPATISRHLAALKHFYRFLVSDGAVSEDYTVSLESPKLKQRLPHVLSTEE----VE 117 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 N LL + R+ A+L L+Y G+R+SE +SL ++ D ++ GKG K RI Sbjct: 118 N-LLCQPQLSDPAGLRDKAMLELIYATGIRVSEMVSLNLPDVELDMGYIKCFGKGAKERI 176 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +PL + I EY + L LF ++GK L F + I++ + + Sbjct: 177 IPLGSVAIRYIREYLERSRVKLTKGKTEHQALFVNVQGKRLTRQGFWKIIKKYAKEGRIN 236 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT++ + E+Y + Sbjct: 237 KPITPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHLTKLR----LREVYTKA 292 Query: 318 HP 319 HP Sbjct: 293 HP 294 >gi|227328397|ref|ZP_03832421.1| site-specific tyrosine recombinase XerD [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 299 Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 100/304 (32%), Positives = 159/304 (52%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ER L++ TL SY D R ++A + + Q++ +++AF++ R Sbjct: 10 EQFLDALWLERNLAENTLASYRLDLRTLAEWVAHHENGLLQAQSL------DLQAFLADR 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ F +YL + K+ ++ + + K LP+ L+E Q V Sbjct: 64 VEGGYKATSSARLLSAMRRFFQYLYREKLRSDDPSAVLSSPKLPQRLPKDLSEAQ----V 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D +L S E ++ R+ A+L +LY GLR+SE +SLT ++ Q +R+ GKG+K R Sbjct: 120 DALLNAPSIEQP-LELRDKAMLEVLYATGLRVSELVSLTMSDVSLRQGVVRVLGKGNKER 178 Query: 199 IVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VPL I EYY P+ LN LF R + + F I+ + Sbjct: 179 LVPLGEEAVYWI-EYYLEHGRPWLLNGQTLDVLFPSSRARQMTRQTFWHRIKHYAVLASI 237 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Sbjct: 238 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQ 293 Query: 316 QTHP 319 Q HP Sbjct: 294 QHHP 297 >gi|255320348|ref|ZP_05361532.1| site-specific recombinase XerC [Acinetobacter radioresistens SK82] gi|262379369|ref|ZP_06072525.1| tyrosine recombinase XerC [Acinetobacter radioresistens SH164] gi|255302543|gb|EET81776.1| site-specific recombinase XerC [Acinetobacter radioresistens SK82] gi|262298826|gb|EEY86739.1| tyrosine recombinase XerC [Acinetobacter radioresistens SH164] Length = 306 Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 93/302 (30%), Positives = 163/302 (53%), Gaps = 16/302 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS-KRR 79 WL+ EI+ S TL +Y D + FL F A +K+ + +I +++R +++ K Sbjct: 12 WLKEREIQNQ-SAHTLSAYARDVKDFLDFCAV---KKLPLNSIEA---SDLREYLALKVE 64 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 +++ SL+R LS I+ F+K+ ++ + + + + ++ LP ++ + ++D Sbjct: 65 REQLSSSSLQRHLSAIRQFMKWAEQGQYLGFNPADDFQLKRQPRPLPGMIDIETVQQILD 124 Query: 140 NVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + W+ R+ A+L LLY GLR++E SL ++I ++ LRI GKG+K R Sbjct: 125 QPAPEKLQDQHLWL--RDKAMLELLYSSGLRLTELQSLCMKDIDFNRRLLRITGKGNKTR 182 Query: 199 IVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 IVP +++L++ ++ + N +F +G L P + ++ G+ Sbjct: 183 IVPFGTQAYESLLKWLEVYRLWQGQFNADSAVFISQKGGQLGPRQIENRVKLQALRAGVN 242 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + H LRH FA+H+LSN GDLR++Q +LGH LSTTQIYT+++ D + +IYDQ Sbjct: 243 IDLHPHLLRHCFASHMLSNSGDLRAVQEMLGHSNLSTTQIYTHIDF----DHLAKIYDQA 298 Query: 318 HP 319 HP Sbjct: 299 HP 300 >gi|296136669|ref|YP_003643911.1| integrase family protein [Thiomonas intermedia K12] gi|295796791|gb|ADG31581.1| integrase family protein [Thiomonas intermedia K12] Length = 336 Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 93/328 (28%), Positives = 157/328 (47%), Gaps = 35/328 (10%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L + + ER L++ TL +Y D L ++ Q+ IR + ++ Sbjct: 20 DYLAHAQTERRLAEGTLVNYRRDLDDLL--------QRAETLGAAQIESVHIRRWAAQLH 71 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV- 138 + R++ LS +SF +++ + + + ++R K + LP+AL+ QA+ L Sbjct: 72 AGGMSPRAIAARLSAWRSFFRWMGRLGFVAANPVQDVRAPKAAKPLPKALSVDQAVALAA 131 Query: 139 -----------DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL------TPQNI 181 + H + AR AI LLY CGLR+SE L T + Sbjct: 132 YSPQKSTPAARPHRRPHQAEPFATRSARVHAIAELLYSCGLRVSELTGLDVRASKTARGW 191 Query: 182 MD-DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF----DLNLNIQLPLFRGIRGK 236 +D D + + GKG+K R VP+ A+ ++ + P D + + Q+ LF G RG Sbjct: 192 IDWDAAEATVTGKGNKRRSVPIGRPALLALRQWLEQRPALLRPDADADAQVALFLGARGA 251 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 L P +R+ R GL H LRHSFA+H+L + GDLR++Q +LGH ++TTQ Sbjct: 252 RLTPQRVWLELREHARAAGLDARVHPHMLRHSFASHVLQSSGDLRAVQELLGHSSIATTQ 311 Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSITQK 324 +YT ++ ++ + ++YD HP +K Sbjct: 312 VYTRLDFQH----LAKVYDAAHPRARKK 335 >gi|332308051|ref|YP_004435902.1| tyrosine recombinase XerD [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175380|gb|AEE24634.1| tyrosine recombinase XerD [Glaciecola agarilytica 4H-3-7+YE-5] Length = 301 Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 94/301 (31%), Positives = 153/301 (50%), Gaps = 13/301 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + +E+GLS+ TL++Y D +F + Y +++ + + +I +++ R Sbjct: 12 EQFLDTIWLEKGLSENTLEAYRSDLTKF----SDYLNKQLPHTHLLDIQTEDINQYMAHR 67 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + +RS R LS + F Y+ + + + M+N K S LP+ L+E+Q V Sbjct: 68 YDSGLTERSSARCLSSFRRFSGYMLAHGLREDDPVSRMQNPKLSKPLPKTLSEQQ----V 123 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D+ LL+ I R+ A+L +LY GLR++E ++L + Q +R+ GKG+K R Sbjct: 124 DD-LLNAPQTDDPIHLRDKAMLEVLYATGLRVTELVTLRVGQLSVSQGVVRVTGKGNKER 182 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +VPL + +Y L N LF RG + F I+ + Sbjct: 183 LVPLGEEALDWLSKYLKEARGALLRNESDVLFPSNRGTIMTRQTFWHRIKFHAAQANITS 242 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + + E+ H Sbjct: 243 DLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATAR----LQELVANHH 298 Query: 319 P 319 P Sbjct: 299 P 299 >gi|253687046|ref|YP_003016236.1| tyrosine recombinase XerD [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753624|gb|ACT11700.1| tyrosine recombinase XerD [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 299 Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 102/308 (33%), Positives = 160/308 (51%), Gaps = 27/308 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ER L++ TL SY D R +LA + + + Q + +++AF++ R Sbjct: 10 EQFLDALWLERNLAENTLASYRLDLRTLAEWLAHHDNDLLQAQAL------DLQAFLADR 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ F +YL + K+ ++ + + K LP+ L+E Q V Sbjct: 64 VDGGYKATSSARLLSAMRRFFQYLYREKLRSDDPSAVLSSPKLPQRLPKDLSEAQ----V 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D +L S E ++ R+ A+L +LY GLR+SE + LT ++ Q +R+ GKG+K R Sbjct: 120 DALLNAPSIEQP-LELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVLGKGNKER 178 Query: 199 IVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VPL I EYY P+ LN LF R + + F I+ Y + Sbjct: 179 LVPLGEEAVYWI-EYYLEHGRPWLLNGQTLDVLFPSNRARQMTRQTFWHRIK----YYAV 233 Query: 257 PLST-----TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 S + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + Sbjct: 234 LASIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LK 289 Query: 312 EIYDQTHP 319 +++ Q HP Sbjct: 290 QLHQQHHP 297 >gi|257791851|ref|YP_003182457.1| tyrosine recombinase XerD [Eggerthella lenta DSM 2243] gi|257475748|gb|ACV56068.1| tyrosine recombinase XerD [Eggerthella lenta DSM 2243] Length = 297 Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 98/310 (31%), Positives = 156/310 (50%), Gaps = 21/310 (6%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 EL +E +L L +ERG S LT+ +Y D + + FL EK ++++ + I Sbjct: 3 ELYRE---YLAYLRVERGSSPLTVSAYAADLKDYAQFL-----EKRGVESLDDVDREVIV 54 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 A+ S + ++ R +S +K F ++L + + ++ K + LP L+ Sbjct: 55 AYESDLFGRGYAASTVDRHVSVLKGFHRFLVREGYARRNPADTIQLPKAPDRLPDVLSVA 114 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 Q + +L + + RN AIL +LYGCGLR+SE L + + ++ L I G Sbjct: 115 QV-----DAMLSRPLDEGPLALRNRAILEVLYGCGLRVSECTGLDLGDAILEEGYLHILG 169 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQ 249 KG+K RI P+ + +A+ +Y + +L + +F RG L + + Sbjct: 170 KGNKERIAPISGAALRALRDYLERGRPELVRSYAKSTSAVFLNARGGRLTRQSVHSLVAE 229 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 R++G+ + HTLRHSFATH+L+ G DLR IQ ILGH +STTQIYT+VN + Sbjct: 230 AGRFIGVA-NLHPHTLRHSFATHMLAGGADLRVIQEILGHSDISTTQIYTHVNRTH---- 284 Query: 310 MMEIYDQTHP 319 + E Y HP Sbjct: 285 IREEYLSAHP 294 >gi|114331692|ref|YP_747914.1| tyrosine recombinase XerD [Nitrosomonas eutropha C91] gi|114308706|gb|ABI59949.1| tyrosine recombinase XerD [Nitrosomonas eutropha C91] Length = 305 Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 98/300 (32%), Positives = 152/300 (50%), Gaps = 21/300 (7%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E GLS+ TL SY D Q + +L+ + + + Q ++ AF+S R Q Sbjct: 18 LWLEDGLSRNTLASYRADLMQLVEWLSRREQTNGLLNDVTQ---ADLLAFLSDRIAQGAK 74 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 + R+L+ I+ F +YL ++ +N+ + K S LP +L E + LL Sbjct: 75 ASTASRALACIRRFYRYLLRQGKILIDPAVNIDSPKVSRHLPVSLAESEV-----EALLA 129 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 S + + R+ A+L +LY GLR+SE +SL + D +RI GKG+K R++PL Sbjct: 130 VSDIKQPLGLRDRAMLEILYAAGLRVSELVSLAISQVRQDMGVVRILGKGNKERLIPLGD 189 Query: 205 SVRKAILEYYDLC-----PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 L + DL P L LF RG + F I++ R G+ Sbjct: 190 EA----LYWLDLYLREARPILLAGKHSNMLFVTTRGDAMTRQAFWYLIKRHARQAGIVKQ 245 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V + + +++ + HP Sbjct: 246 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARER----LRQLHARHHP 301 >gi|330895934|gb|EGH28218.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. japonica str. M301072PT] Length = 298 Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 101/308 (32%), Positives = 151/308 (49%), Gaps = 32/308 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISKRR 79 +L L +E+GLS T SY D +F + E + I R++ I ++ R Sbjct: 12 FLDALWLEKGLSDNTRDSYRSD---LALFNGWLQERNVDLISAGREV----ILDHLAWRV 64 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 RS R LSG++ F +YL + K+ + L + + LP++L+E Sbjct: 65 ENAYKPRSTARFLSGVRGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADV----- 119 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 LL ++ I R+ A+L +LY CGLR++E +SLT + + Q LR+ GKG K R+ Sbjct: 120 EALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERL 179 Query: 200 VPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 VP+ +R A E P D+ LF RG + F I+ Sbjct: 180 VPMGEESIVWVERYLRGARDELLGGKPSDV-------LFPSTRGDQMTRQTFWHRIKHQA 232 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 G+ S + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + Sbjct: 233 TVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----LQ 288 Query: 312 EIYDQTHP 319 E++ + HP Sbjct: 289 ELHARHHP 296 >gi|114566153|ref|YP_753307.1| recombinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337088|gb|ABI67936.1| tyrosine recombinase XerD subunit [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 296 Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 99/302 (32%), Positives = 157/302 (51%), Gaps = 14/302 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++++ L E+GL+ + +Y+ D +F FL +E + + +S +I AF++ + Sbjct: 6 EDFISYLNFEKGLAANSRIAYKRDLLKFQQFL----QENSRALSPQNISKHDIMAFLAWQ 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q S+ RSLS IKS+ K+L ++ ++ K LP+ L+ ++ V Sbjct: 62 LDQGAAHSSIARSLSSIKSYYKFLILEGELDKNPSSDLETPKIKRKLPQVLSIEE----V 117 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D L+ + + R+ A+L L+YG G+R+SE LSL +++ LR GKG K R Sbjct: 118 DK-LMEQPNPVVPLGIRDRAMLELMYGTGIRVSELLSLQVEDLNPTAGFLRCMGKGRKER 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 I+P+ + + Y L N ++ LF RG+PL+ F + + L Sbjct: 177 IIPVNQTSIDWVQRYLARVRNSLVKNPLERTLFLNARGRPLSRQGFFKILGNYVEKAELE 236 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT++ + E+Y Q Sbjct: 237 KEVTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHLTKSR----LREVYQQY 292 Query: 318 HP 319 HP Sbjct: 293 HP 294 >gi|301299347|ref|ZP_07205632.1| tyrosine recombinase XerC [Lactobacillus salivarius ACS-116-V-Col5a] gi|300853087|gb|EFK80686.1| tyrosine recombinase XerC [Lactobacillus salivarius ACS-116-V-Col5a] Length = 298 Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 91/296 (30%), Positives = 154/296 (52%), Gaps = 25/296 (8%) Query: 21 WLQNLE----IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 W++ + IE+ S TL++Y D + F+ F+ +E ++ +++ ++ A++S Sbjct: 5 WIEEFKKYLLIEKQYSDETLKAYSEDLQHFVDFI----DETGGAKSFKEIGSNDVHAYMS 60 Query: 77 KRRTQKIGDR----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 + DR S+ R +S +++F +L K ++T E+ ++ + SLPR EK Sbjct: 61 Y-----LYDRYEMTSISRMISSLRAFYNFLIKNELTDENPFAYVQLKRHPRSLPRFFYEK 115 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + L + T +T+ + R+ A+L LYG G+R+SE L N+ + + G Sbjct: 116 EMTALFEA----TEGDTQML-IRDRALLESLYGTGMRVSECTGLKMGNVDLTNKKMLLHG 170 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQ 249 KGDK R+VP ++A+ Y++ L +F G PL P ++Q Sbjct: 171 KGDKDRLVPFGSYCQEALQRYFEQTRTPLMEKYHRDHDLVFVNHYGNPLTPAGVAYILKQ 230 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + + L S H LRH+FATHL+SNG DLR++Q +LGH LSTTQIYT+V ++ Sbjct: 231 IVKRSSLHTSIHPHELRHTFATHLMSNGADLRAVQELLGHSSLSTTQIYTHVTPEH 286 >gi|189485678|ref|YP_001956619.1| tyrosine recombinase XerC [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287637|dbj|BAG14158.1| tyrosine recombinase XerC [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 314 Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 99/301 (32%), Positives = 155/301 (51%), Gaps = 29/301 (9%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L ER S TL++Y+ D F +FL ++++ +IR F+ + +K+ Sbjct: 34 LNAERNFSAHTLRAYKRDISDFALFL---QKKRLNFS---HAGKRDIREFLEELGNKKLS 87 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNM-RNLKKSNSLPRALNEKQALTLVDNVLL 143 +L R L+ + SF K+L KI E+ I +M +LKK +P L E + L++ Sbjct: 88 RATLARKLAVLHSFYKFLIINKIIKENFIESMPASLKKDKKVPSFLTENEMQMLLN---- 143 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 + R+ A++ L Y CGLRI E +SL +NI + + + GK +K RIVP+ Sbjct: 144 -----LPDLKPRDRAMIELFYSCGLRIEELVSLDLKNIDFISNVVTVTGKRNKERIVPVG 198 Query: 204 PSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 AI +Y + P+D I+ P+F R K L +R + + G Sbjct: 199 DICLHAIKDYINKRRNLGLPYD----IRSPVFLSDRAKRLGQRTARRILHRYFVKAGFTK 254 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + HTLRH+FATH+L G DLRS+Q +LGH LS+TQIYT+V ++ + ++Y +TH Sbjct: 255 KVSPHTLRHTFATHILDRGCDLRSVQEMLGHKNLSSTQIYTHVTIES----LKKVYKETH 310 Query: 319 P 319 P Sbjct: 311 P 311 >gi|221065123|ref|ZP_03541228.1| integrase family protein [Comamonas testosteroni KF-1] gi|220710146|gb|EED65514.1| integrase family protein [Comamonas testosteroni KF-1] Length = 348 Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 95/335 (28%), Positives = 160/335 (47%), Gaps = 44/335 (13%) Query: 5 NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64 LPE+V ++L+++ +++ L+ T Y D + +E +T+Q Sbjct: 15 QLPEVV--------HSYLEHVRVQKRLADRTHTLYALDLIKLQSLAQAADQELLTLQP-- 64 Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 IR F ++ + R + LSG +SF ++ +R++ + + +R K + Sbjct: 65 ----AHIRRFAAQMHSAGRSARGIALILSGWRSFFRWAAQRELVPFNPVEGVRGPKAAKP 120 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 LP+AL A+ L WI+AR+ A+ LLY CGLR++E + L ++ D Sbjct: 121 LPKALAVDDAVQLAS---FQIPDADPWIEARDVAMTELLYSCGLRVAELVGL---DLRPD 174 Query: 185 QSTLR--------------IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--- 227 Q +L+ +QGKG K RIVP+ +A+ + L L Q Sbjct: 175 QQSLQQGRGWIDLEAGDAHVQGKGSKRRIVPVGRMAIEALQRWLALRSSALTGAAQFKAQ 234 Query: 228 ---PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284 LF G RG+ L ++Q + GL H LRHSFA+H+L + GDLR++Q Sbjct: 235 DETALFIGRRGERLGGHSVWSRLKQRGQRAGLASGVHPHVLRHSFASHMLQSSGDLRAVQ 294 Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 +LGH ++TTQIYT ++ ++ + + Y++ HP Sbjct: 295 ELLGHASIATTQIYTRLDFQH----LAQAYEKAHP 325 >gi|56420850|ref|YP_148168.1| site-specific tyrosine recombinase XerD [Geobacillus kaustophilus HTA426] gi|56380692|dbj|BAD76600.1| integrase/recombinase [Geobacillus kaustophilus HTA426] Length = 298 Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 95/306 (31%), Positives = 157/306 (51%), Gaps = 16/306 (5%) Query: 17 ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 E +++L L +ER L+ T+ SYE D ++++ +L + +Q ++ I F+ Sbjct: 4 ELKDFLHYLTVERNLAHNTIVSYERDLKKYVRYL----RQVEQLQAWGEVERLHILHFLK 59 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 Q R++ R L+ I+SF ++L + KI + +++ + +LP+ L+ ++ Sbjct: 60 FLSEQGQSARTIARHLASIRSFHQFLLREKIAAQDPTVHIETPQFERTLPKVLSVEEV-- 117 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 LL + R+ A+L LLY G+R+SE + L ++ +R GKG K Sbjct: 118 ---EALLAAPQVSTPFGLRDKAMLELLYATGMRVSELVQLNLSDVHLTMGFVRCYGKGRK 174 Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQLRRY 253 RIVP+ +A+ Y + P +N + LF G+ L F + +++L + Sbjct: 175 ERIVPIGRMAIEALAHYLERGRPQLVNPRRRATEALFLNHYGQRLTRQGFWKILKRLAKE 234 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ T HTLRHSFATHLL NG DLR++Q +LGH +STTQ+YT+V D + Sbjct: 235 AGIEKELTPHTLRHSFATHLLENGADLRAVQELLGHADISTTQMYTHVTKTRLKD----V 290 Query: 314 YDQTHP 319 Y Q HP Sbjct: 291 YKQYHP 296 >gi|330443758|ref|YP_004376744.1| tyrosine recombinase XerD [Chlamydophila pecorum E58] gi|328806868|gb|AEB41041.1| tyrosine recombinase XerD [Chlamydophila pecorum E58] Length = 321 Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 103/303 (33%), Positives = 155/303 (51%), Gaps = 32/303 (10%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L ++RGL + T+ +Y D FL+ + E+I S + F+ K + Sbjct: 40 LSVDRGLCQQTILAYSQDISLFLLLNKILSTEEI--------SQNSVCYFVEKLHERNEA 91 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL- 143 + +L R L +K F +LK ++ I+ + K LP L+ ++ V+ +LL Sbjct: 92 EATLARRLIALKVFFIFLKDAQLLKHPPIIEHPKIWKR--LPTVLSPQE----VEQLLLT 145 Query: 144 --HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 H + I AR++AILY LY G+R+SE L ++ D+ +R+ GKG K R+VP Sbjct: 146 PKRAKHLSPLIVARDTAILYTLYSTGIRVSELCDLEIGDVNDE--FIRVTGKGSKTRLVP 203 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYL-GL 256 L R AI Y L PF + + P LF RGK L R I + + + Sbjct: 204 LGSLARDAIDAY--LSPFRDLMRQKSPKEEHLFLSFRGKKLERSCIWRRIHEYAKQITSK 261 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 P+S H+LRH+FATHLL+N DLR IQ +LGH R+S+T+IYT+V S D ++E + Sbjct: 262 PVS--PHSLRHAFATHLLNNKADLRVIQEMLGHSRISSTEIYTHVAS----DALIEKFHT 315 Query: 317 THP 319 HP Sbjct: 316 FHP 318 >gi|206900840|ref|YP_002251182.1| tyrosine recombinase XerD [Dictyoglomus thermophilum H-6-12] gi|206739943|gb|ACI19001.1| tyrosine recombinase XerD [Dictyoglomus thermophilum H-6-12] Length = 296 Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 96/301 (31%), Positives = 156/301 (51%), Gaps = 17/301 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L L+ E+ +S T+ SY D F+ FL +E I I+ +++ + R ++ Sbjct: 6 EDFLFYLKFEKNMSSATIDSYRRDLEDFINFL---QKEGINIKNLKREEWQ--RYLVALY 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + KI +S+ R +S I+SF+K+L + ++ M K LP L+ K+ + Sbjct: 61 KKYKI--KSIARKISSIRSFIKFLLREGYINKNYSNFMLIPKIPMYLPEVLDPKEIESF- 117 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L + RN AIL Y G+R+SE ++L QN+ ++ +R GKG+K R Sbjct: 118 ----LKIPDPLSPLGIRNMAILETFYATGIRVSELVNLNIQNVDLEEKYVRCFGKGEKER 173 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 IVPL +++ Y + N + LF +G+ + I+ + LGLP Sbjct: 174 IVPLGDYAVESLKRYLSVRHL-FNPKDKEALFLNKKGERITRQGVWFIIKAYSKILGLPK 232 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + HT RHSFATHLLSNG D+R +Q +LGH ++TTQIYT++ S + E+Y + H Sbjct: 233 KVSPHTFRHSFATHLLSNGADIRIVQELLGHSDIATTQIYTHIVSSK----LHEVYQRAH 288 Query: 319 P 319 P Sbjct: 289 P 289 >gi|117620205|ref|YP_857765.1| tyrosine recombinase XerD [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561612|gb|ABK38560.1| tyrosine recombinase XerD [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 299 Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 93/302 (30%), Positives = 156/302 (51%), Gaps = 16/302 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ERGLS T+ SY D +F A + +E+ + L +I+ +++ R Sbjct: 11 EPFLDALWLERGLSDNTVSSYRTDLEKF----ALWLDEQGGSLLLAGLD--DIQHYLAWR 64 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q+ S R LS ++ F +YL + K+ ++ + + K LP L+E + L+ Sbjct: 65 VDQQFAASSTARFLSALRRFYQYLNREKLRSDDPTVLLEGPKLPKKLPSDLSEAEVEALL 124 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L+ ++ R+ A+L LLY GLR+SE + LT +++ Q +R+ GKG+K R Sbjct: 125 QAPLVDEP-----LELRDKAMLELLYATGLRVSELVGLTAEHVSLRQGLVRVVGKGNKER 179 Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ + YY + L +F + + + F I+ + G+ Sbjct: 180 LVPMGEEAVHWLERYYREARTLLLGGTSSDVVFPSKQARMMTRQTFWHRIKLYAQRAGIQ 239 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + ++ Q Sbjct: 240 GELSPHTLRHAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVANER----LKALHGQH 295 Query: 318 HP 319 HP Sbjct: 296 HP 297 >gi|116619488|ref|YP_821644.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116222650|gb|ABJ81359.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 303 Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 97/307 (31%), Positives = 150/307 (48%), Gaps = 19/307 (6%) Query: 17 ERQNWLQNLEIER-GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 ERQ L ++ R G S+ ++++YE D RQFL FL+ I L +R ++ Sbjct: 10 ERQIVLYLEDLARAGNSEHSIRAYESDLRQFLAFLSPPDLAPPAPAAIDLLI---LREWL 66 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 + + +L+R L+ ++ ++L + + + +R K LP + Q Sbjct: 67 AGLYRDDLSAVTLRRKLAAVRGLFRFLLREGVVPLNVACLVRTPKAPKKLPEVMTADQVN 126 Query: 136 TLVDNV---LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 +L+D V L H AR+ AI LLYGCG+R+SE L ++I + LR++G Sbjct: 127 SLIDGVGGVELERPHP-----ARDRAIFELLYGCGIRVSELAGLNLEDIDRTEGWLRVRG 181 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 KG K R VPL +++ Y P Q +F R L ++ Sbjct: 182 KGKKERQVPLPGQAAQSLERYLAERPVARE---QPAVFVNHRRARLTTRGISGIVKLYAT 238 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 YL H+ RH++ATHLL++G DLR+IQ +LGH RLSTTQ YT V+ + +M Sbjct: 239 YLSNDPGIHPHSFRHAYATHLLADGADLRAIQELLGHARLSTTQKYTQVSLTD----LMA 294 Query: 313 IYDQTHP 319 +YD+ HP Sbjct: 295 VYDKAHP 301 >gi|257869686|ref|ZP_05649339.1| site-specific recombinase [Enterococcus gallinarum EG2] gi|257803850|gb|EEV32672.1| site-specific recombinase [Enterococcus gallinarum EG2] Length = 299 Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 96/309 (31%), Positives = 150/309 (48%), Gaps = 22/309 (7%) Query: 19 QNWLQN-----LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 +N LQN L +ERG S T +Y+ D F FL E + + ++R Sbjct: 3 ENELQNDFFRYLIVERGYSDKTKSAYQEDMEDFFRFLKESGNEDFLA-----IDHRDVRV 57 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 ++S + S+ R ++ ++SF +L K ++ E+ + KK+ LPR EK+ Sbjct: 58 YLSFLNERNYSRNSISRKMASLRSFYHFLTKHEVIKENPFAYIHLKKKNAKLPRFFYEKE 117 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L ++V H + RN A+L +LYG GLR+SE +LT ++ + L I GK Sbjct: 118 MEALFESVKGHEP-----LQQRNRALLEILYGSGLRVSECSNLTLSDVDWENGVLLIHGK 172 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 G+K R VP ++A+ +Y L + +F G + + + Q+ Sbjct: 173 GNKDRYVPFGSYAQEALRDYVSAGRQQLMEKHHKRHEIVFVNHLGDGITATGIEYVLNQI 232 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 R L H LRH+FATHLL++G D+R++Q +LGH LSTTQIY +V D + Sbjct: 233 IRKSSLDSKIHPHMLRHTFATHLLNHGADMRTVQELLGHANLSTTQIYAHVTK----DSL 288 Query: 311 MEIYDQTHP 319 + Y Q HP Sbjct: 289 QKNYRQFHP 297 >gi|330959145|gb|EGH59405.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. maculicola str. ES4326] Length = 298 Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 100/308 (32%), Positives = 147/308 (47%), Gaps = 30/308 (9%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +L L +E+GLS T SY D +F + E + + + I ++ R Sbjct: 11 QFLDALWLEKGLSDNTRDSYRSD---LALFNGWLQERNVDLPSA---GREVILDHLAWRV 64 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 RS R LSG + F +YL + K+ L + + LP++L+E Sbjct: 65 DNAYKPRSTARFLSGARGFYRYLLREKLIAIDPTLQIDMPQLGKPLPKSLSEADV----- 119 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 LL ++ I R+ A+L +LY CGLR++E +SLT + + Q LR+ GKG K R+ Sbjct: 120 EALLAAPDLSEPIGQRDRAVLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERL 179 Query: 200 VPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 VP+ +R A E P D+ LF RG + F I+ Sbjct: 180 VPMGEEAIVWVERYLRGARDELLGGKPSDV-------LFPSTRGDQMTRQTFWHRIKHQA 232 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 G+ S + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + Sbjct: 233 TVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----LQ 288 Query: 312 EIYDQTHP 319 EI+ + HP Sbjct: 289 EIHAKHHP 296 >gi|302185529|ref|ZP_07262202.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. syringae 642] Length = 298 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 101/309 (32%), Positives = 151/309 (48%), Gaps = 32/309 (10%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISKR 78 +L L +E+GLS T SY D +F + E + I R++ I ++ R Sbjct: 11 QFLDALWLEKGLSDNTRDSYRSD---LALFHGWLQERNVDLISAGREV----ILDHLAWR 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 RS R LSG + F +YL + K+ + L + + LP++L+E Sbjct: 64 VENAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADV---- 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL ++ I R+ A+L +LY CGLR++E +SLT + + Q LR+ GKG K R Sbjct: 120 -EALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKER 178 Query: 199 IVPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 +VP+ +R A E P D+ LF RG+ + F I+ Sbjct: 179 LVPMGEESIVWVERYLRGARDELLGGKPSDV-------LFPSTRGEQMTRQTFWHRIKHQ 231 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ S + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + Sbjct: 232 ATVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----L 287 Query: 311 MEIYDQTHP 319 E++ + HP Sbjct: 288 QEMHARHHP 296 >gi|220933239|ref|YP_002512138.1| tyrosine recombinase XerC [Thioalkalivibrio sp. HL-EbGR7] gi|219994549|gb|ACL71151.1| tyrosine recombinase XerC [Thioalkalivibrio sp. HL-EbGR7] Length = 298 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 93/306 (30%), Positives = 149/306 (48%), Gaps = 24/306 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L++L ER S T+++Y D R+ + + +IRA ++K Sbjct: 12 YLRHLREERRYSPHTVENYARDLRRLC---------EAVGDDWSSVKVHDIRALVAKEHR 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q G ++L+R LS I+ F YL + + + L++R K LP L+ Q L+D Sbjct: 63 QGAGSKTLQRLLSAIRGFFNYLIREGVADANPALDVRAPKSGRKLPGVLDVDQVARLLDL 122 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + + R+ AIL L Y GLR++E + L ++ + LR+ GKG K R + Sbjct: 123 P------GDEALVVRDRAILELFYSSGLRLAELVGLDLVDVDLGDAQLRVTGKGRKARDL 176 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 P+ R A+ P L + LF G RG+ L Q + + GL Sbjct: 177 PI---GRHAVAALKAWLPMRAGLAAADEQALFVGQRGRRLGARAVQTRLARHAGLQGLDR 233 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 H LRHSFA+HLL + GDLR++Q +LGH +STTQ+YT+++ ++ + ++YD H Sbjct: 234 RVHPHLLRHSFASHLLESSGDLRAVQELLGHADISTTQVYTHLDYQH----LAKVYDAAH 289 Query: 319 PSITQK 324 P +K Sbjct: 290 PRARRK 295 >gi|284008429|emb|CBA74880.1| tyrosine recombinase [Arsenophonus nasoniae] Length = 303 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 99/306 (32%), Positives = 157/306 (51%), Gaps = 23/306 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + +E L+ TL SY D + + +L+ + +T+ + ++++F+++R Sbjct: 14 EQFLDTIWLEHDLAANTLSSYRTDLQTLVGWLSRQGYDLLTVGVM------DLQSFLAER 67 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +Y + K+ T+ + K LP+ LNEKQ Sbjct: 68 VEGGYKATSSARLLSAMRRLFQYFYREKLRTDDPTAQLSAPKLPKRLPKDLNEKQV---- 123 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LLH I+ R+ +L +LY CGLR+SE + LT +I Q +R+ GKG+K R Sbjct: 124 -EDLLHAPTTQDPIELRDKTMLEVLYACGLRVSELVGLTLTDISLRQGVIRVVGKGNKER 182 Query: 199 IVPLLPSVRKAI--LEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 +VPL +AI LE Y + P LN LF RG + F I+ Sbjct: 183 LVPL---GEEAIYWLETYLTESRPILLNGLTNDVLFPSKRGTQMTRQTFWHRIKYYAAIA 239 Query: 255 GLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ + + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + ++ Sbjct: 240 GIDSAKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQL 295 Query: 314 YDQTHP 319 + Q HP Sbjct: 296 HQQHHP 301 >gi|295133714|ref|YP_003584390.1| tyrosine recombinase [Zunongwangia profunda SM-A87] gi|294981729|gb|ADF52194.1| tyrosine recombinase [Zunongwangia profunda SM-A87] Length = 299 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 104/309 (33%), Positives = 157/309 (50%), Gaps = 22/309 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF--YTEEKITI-QTIRQLSYTEIRAFI 75 +++L L++ERGLS ++ SYE D + + FL + +TI Q QL EI Sbjct: 8 KDYLTYLKLERGLSVNSISSYELDLIKLINFLKVKSISASPLTIDQETLQLFLYEI---- 63 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 +++ RS R +SG+KSF YL I + N +L ++ + R L E ++ Sbjct: 64 ----AKELNSRSRARIISGLKSFFNYL----IFEDYRKDNPTDLIEAPKIGRKLPETISV 115 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 +D L+ TK RN AI+ LYGCGLR+SE +L ++ ++ +++ GKGD Sbjct: 116 EEIDE-LIAAIDLTKTEGERNRAIIETLYGCGLRVSELTNLRISDLYFEEGFIKVTGKGD 174 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRY 253 K R VP+ K I Y D + + LF RG L + IRQL Sbjct: 175 KQRFVPISDYNIKYITIYKDQVRAHQEIKPEASDTLFLNRRGAQLTRAMIFTIIRQLAEK 234 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 + + HT RHSFATHLL NG DLR+IQ +LGH ++TT+IY +++ ++ E+ Sbjct: 235 ANIRKKISPHTFRHSFATHLLENGADLRAIQQMLGHESITTTEIYMHMDRT----YLREV 290 Query: 314 YDQTHPSIT 322 + HP T Sbjct: 291 LETYHPKKT 299 >gi|260913748|ref|ZP_05920224.1| tyrosine recombinase XerD [Pasteurella dagmatis ATCC 43325] gi|260632287|gb|EEX50462.1| tyrosine recombinase XerD [Pasteurella dagmatis ATCC 43325] Length = 301 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 100/302 (33%), Positives = 159/302 (52%), Gaps = 15/302 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L ++ IER LS+ T+QSY D L +L +EE+ T+ L +++ F+ +R T Sbjct: 10 FLNDVWIERKLSQNTVQSYRLDLTALLQWLEKQSEEQPL--TLITLDAIDLQTFLGERLT 67 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q S R LS I+ +YL + K T+ + + K + LP+ L E+Q L++ Sbjct: 68 QGYKATSTARLLSAIRKLFQYLYREKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTDLLNA 127 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + ++ R+ A++ LLY GLR++E +SLT +NI +Q +R+ GKG+K RIV Sbjct: 128 PDVDVP-----LELRDKAMMELLYATGLRVTELVSLTVENININQGIVRVIGKGNKERIV 182 Query: 201 PLLPSVRKAILEY--YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 P+ I ++ Y LN LF R + F I+ + L Sbjct: 183 PIGEEATYWIRQFVLYGRTTL-LNGQSSDVLFPSKRAVQMTRQTFWHRIKHYALISEIDL 241 Query: 259 -STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 S + H LRH+FATHL+++G DLR +Q +LGH LSTTQIYT+V + + ++++ Sbjct: 242 NSLSPHVLRHAFATHLINHGADLRVVQMLLGHSDLSTTQIYTHVAKER----LKHLHERY 297 Query: 318 HP 319 HP Sbjct: 298 HP 299 >gi|307250820|ref|ZP_07532749.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857179|gb|EFM89306.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 297 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 96/303 (31%), Positives = 154/303 (50%), Gaps = 18/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L E GLS+ T +Y D F +E T + L + +++AF+ +R Sbjct: 9 EQFLDTLWQEHGLSENTSAAYRLDLESF-------SEWLPTPKAFLTLDHFDLQAFLGER 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ F ++L + L + + +K LP++L+E+Q + L+ Sbjct: 62 LELGYKATSSARMLSCLRKFFRFLYTENYRQDDPTLTLTSPRKPAHLPKSLSEEQVMDLL 121 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + + I+ R+ A+L LLY GLR+SE +SL+ N+ Q +R+ GKGDK R Sbjct: 122 D-----SPNTLDPIELRDKAMLELLYATGLRVSELVSLSIDNLSLRQGVVRVVGKGDKER 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ I E++ L N+Q + F RG+ + F I+ G+ Sbjct: 177 LVPIGEEAGYWIQEFFRYGRAILLNNLQSDVVFPSRRGQQMTRQTFWHRIKHYAVLAGID 236 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHL+++G DLR +Q +LGH LSTTQIYT+V + ++ Q Sbjct: 237 SEKLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKAR----LKSLHQQ 292 Query: 317 THP 319 HP Sbjct: 293 FHP 295 >gi|170781657|ref|YP_001709989.1| site-specific tyrosine recombinase XerD [Clavibacter michiganensis subsp. sepedonicus] gi|169156225|emb|CAQ01367.1| putative XerD-family recombinase [Clavibacter michiganensis subsp. sepedonicus] Length = 328 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 96/325 (29%), Positives = 156/325 (48%), Gaps = 24/325 (7%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 + PE V L + WL+++E+ERGLS+ T+Q+Y D ++ LA + Sbjct: 14 DTAPE-VPVALRRAVDRWLRHVEVERGLSRNTIQAYRRDLARYTAHLAAEG-----VADP 67 Query: 64 RQLSYTEIRAFISKRRTQKIGD---RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 + + F + R + G SL R LS ++SF ++L + I + K Sbjct: 68 ADATSAHVAGFAQRVRDPEQGGLTASSLARMLSSVRSFHRFLVEEGIVEVDVSAEQKPPK 127 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 + LP+A++ + ++D + + + R+ A+L LLY G R+SE +LT + Sbjct: 128 LPSRLPKAVSVETMGRILD-----ATDGDEPLRVRDKALLELLYATGARVSEITALTVDD 182 Query: 181 IMDDQST----LRIQGKGDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLP-LFRGIR 234 ++ +R+ GKG K RIVP+ R+A+ Y + P P LF G+R Sbjct: 183 VLGPDGAAAEIVRVVGKGGKQRIVPVGSFARRAVDAYLVRVRPILAARGSATPALFLGLR 242 Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 G L+ I+ G+ + H RHSFATHL++ G D+R +Q +LGH ++T Sbjct: 243 GHALSRQNAWLVIKAAAERAGVTEEISPHIFRHSFATHLIAGGADVRVVQELLGHSSVAT 302 Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHP 319 TQIYT V D + ++Y HP Sbjct: 303 TQIYTRVTV----DTLRDVYTTAHP 323 >gi|25028473|ref|NP_738527.1| site-specific tyrosine recombinase XerC [Corynebacterium efficiens YS-314] gi|34222795|sp|Q7ZAK0|XERC_COREF RecName: Full=Tyrosine recombinase xerC gi|23493758|dbj|BAC18727.1| putative phage integrase/recombinase XerC [Corynebacterium efficiens YS-314] Length = 310 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 88/307 (28%), Positives = 153/307 (49%), Gaps = 21/307 (6%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 ++L+ +++ L + G S T++ Y D R TI + + + +R Sbjct: 23 QMLEAIEDFCDYLILVVGRSDATVRGYRSDLRHM----------AATIPDLTEFTLPNLR 72 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 A++ + + +L R + +KSF + K + + + + K + +LPR L E Sbjct: 73 AWLGRAVEEGKSRATLARRTASVKSFSTWAVKNGLISGDEAARLVSPKVTRNLPRVLGEV 132 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 QA + + T E + R+SAIL LLY G+R+SE L ++ + +R+ G Sbjct: 133 QAGEFMGSAAADTEDEFR----RDSAILELLYATGMRVSELCGLDLGDVDHHRRMVRVLG 188 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 KGDK R++P + A+ ++ L D ++ +F G+RG ++ +R + + + Sbjct: 189 KGDKERMIPFGKAAADALEQW--LEARDRMAKVEDAMFVGVRGGRIDARQIRRIVDRTAQ 246 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 G + H+LRH+ ATHLL G DLR +Q +LGH L TTQIYT+V+S+ ++E Sbjct: 247 VAGAD-HLSPHSLRHTAATHLLDGGADLRQVQEMLGHSSLQTTQIYTHVSSQR----LLE 301 Query: 313 IYDQTHP 319 + Q HP Sbjct: 302 AFRQAHP 308 >gi|313206906|ref|YP_004046083.1| tyrosine recombinase xerd [Riemerella anatipestifer DSM 15868] gi|312446222|gb|ADQ82577.1| tyrosine recombinase XerD [Riemerella anatipestifer DSM 15868] gi|325335657|gb|ADZ11931.1| XerD [Riemerella anatipestifer RA-GD] Length = 303 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 90/303 (29%), Positives = 160/303 (52%), Gaps = 15/303 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q++ L+ E+ LS T+ +Y D ++ L ++ E K+ + +SY +I+ ++ + Sbjct: 8 QDFANALKFEKNLSNNTIDAYTRDIKK----LQYFAENKLNDTSALDISYEQIQEYLYQI 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 +RS R +S IK+F K+L + ++ ++ + K LP L+ ++ +L+ Sbjct: 64 SKNYTNERSQSRWISSIKAFFKFLHEDELRADNPARLLETPKLGLYLPDTLSFEEIESLI 123 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + + +T + RN I+ LYGCGLR+SE + L N+ ++ + + GKG K R Sbjct: 124 EAI-----DKTTSLGKRNHTIIETLYGCGLRVSELVELKISNLNFEEEFIIVDGKGGKTR 178 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VPL + I +Y ++ +N + LF RG L + I+ L + Sbjct: 179 LVPLAQYTAELIKDYLLEVRSEIKINPKHSDILFLNRRGSKLTRVMVFIIIKDLALQANI 238 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + + HT RHSFATHLL NG DLR IQ +LGH ++TT+IYT++++++ + +M + Sbjct: 239 KKNISPHTFRHSFATHLLKNGADLRYIQEMLGHSSITTTEIYTHLDNEDLRETIM----K 294 Query: 317 THP 319 HP Sbjct: 295 YHP 297 >gi|190150873|ref|YP_001969398.1| tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307264224|ref|ZP_07545815.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189916004|gb|ACE62256.1| tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306870470|gb|EFN02223.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 297 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 96/303 (31%), Positives = 153/303 (50%), Gaps = 18/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L E GLS+ T +Y D F +E T + L + +++AF+ R Sbjct: 9 EQFLDTLWQEHGLSENTSAAYRLDLESF-------SEWLPTPKAFLTLDHFDLQAFLGGR 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ F ++L + L + + +K LP++L+E+Q + L+ Sbjct: 62 LELGYKATSSARMLSCLRKFFRFLYTENYRQDDPTLTLTSPRKPAHLPKSLSEEQVMDLL 121 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + + I+ R+ A+L LLY GLR+SE +SL+ N+ Q +R+ GKGDK R Sbjct: 122 D-----SPNTLDPIELRDKAMLELLYATGLRVSELVSLSIDNLSLRQGVVRVVGKGDKER 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ I E++ L N+Q + F RG+ + F I+ G+ Sbjct: 177 LVPIGEEAGYWIQEFFQYGRAILLNNLQSDVVFPSRRGQQMTRQTFWHRIKHYAVLAGID 236 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHL+++G DLR +Q +LGH LSTTQIYT+V + ++ Q Sbjct: 237 SEKLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKAR----LKSLHQQ 292 Query: 317 THP 319 HP Sbjct: 293 FHP 295 >gi|261417849|ref|YP_003251531.1| site-specific tyrosine recombinase XerD [Geobacillus sp. Y412MC61] gi|297529517|ref|YP_003670792.1| tyrosine recombinase XerD [Geobacillus sp. C56-T3] gi|319767339|ref|YP_004132840.1| tyrosine recombinase XerD [Geobacillus sp. Y412MC52] gi|261374306|gb|ACX77049.1| tyrosine recombinase XerD [Geobacillus sp. Y412MC61] gi|297252769|gb|ADI26215.1| tyrosine recombinase XerD [Geobacillus sp. C56-T3] gi|317112205|gb|ADU94697.1| tyrosine recombinase XerD [Geobacillus sp. Y412MC52] Length = 298 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 95/306 (31%), Positives = 157/306 (51%), Gaps = 16/306 (5%) Query: 17 ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 E +++L L +ER L+ T+ SYE D ++++ +L + +Q ++ I F+ Sbjct: 4 ELKDFLHYLTVERNLAHNTIVSYERDLKKYVRYL----RQVEQLQAWGEVERLHILHFLK 59 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 Q R++ R L+ I+SF ++L + KI + +++ + +LP+ L+ ++ Sbjct: 60 FLSEQGQSARTIARHLASIRSFHQFLLREKIAAQDPTVHIETPQFERTLPKVLSVEEV-- 117 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 LL + R+ A+L LLY G+R+SE + L ++ +R GKG K Sbjct: 118 ---EALLAAPQVSTPFGLRDKAMLELLYATGMRVSELVQLNLADVHLTMGFVRCYGKGRK 174 Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQLRRY 253 RIVP+ +A+ Y + P +N + LF G+ L F + +++L + Sbjct: 175 ERIVPIGRMAIEALAHYLERGRPQLVNPRRRATEALFLNHYGQRLTRQGFWKILKRLAKE 234 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ T HTLRHSFATHLL NG DLR++Q +LGH +STTQ+YT+V D + Sbjct: 235 AGIEKELTPHTLRHSFATHLLENGADLRAVQELLGHADISTTQMYTHVTKTRLKD----V 290 Query: 314 YDQTHP 319 Y Q HP Sbjct: 291 YKQYHP 296 >gi|160896902|ref|YP_001562484.1| integrase family protein [Delftia acidovorans SPH-1] gi|160362486|gb|ABX34099.1| integrase family protein [Delftia acidovorans SPH-1] Length = 365 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 90/316 (28%), Positives = 150/316 (47%), Gaps = 30/316 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+++ +++ L+ T Y D + +E + +Q IR F+++ + Sbjct: 35 YLEHVRVQKRLADRTCALYALDMARLCTMARDAGQELLALQP------AHIRRFVAQMHS 88 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + R + LSG +SF ++ ++ + + + +R K LP+AL A+ L Sbjct: 89 RGRSPRGIALILSGWRSFFRWAAQQSLVPFNPVEGVRGPKAPKPLPKALGVDDAVQLA-- 146 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR----------- 189 + WI+AR++AI LLY CGLR+ E + L D Q R Sbjct: 147 -AFSNAEADPWIEARDAAITELLYSCGLRVGELVGLDVAPGQDTQRQGRGWIDLQAADAH 205 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDL------CPFDLNLNIQLPLFRGIRGKPLNPGVF 243 +QGKG K R VP+ + +A+ + L L + + LF G RG+ L Sbjct: 206 VQGKGGKRRTVPVGAAALQALQRWLALRETGLAGAAALAAHHESALFIGRRGERLGAQSV 265 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 +RQ + GL H LRHSFA+H+L + GDLR++Q +LGH +STTQIYT ++ Sbjct: 266 WTRLRQRGQQAGLSAGVHPHVLRHSFASHMLQSSGDLRAVQELLGHASISTTQIYTRLDF 325 Query: 304 KNGGDWMMEIYDQTHP 319 ++ + + Y+ HP Sbjct: 326 QH----LAQAYENAHP 337 >gi|39996918|ref|NP_952869.1| integrase/recombinase XerD [Geobacter sulfurreducens PCA] gi|39983806|gb|AAR35196.1| integrase/recombinase XerD [Geobacter sulfurreducens PCA] Length = 295 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 98/303 (32%), Positives = 158/303 (52%), Gaps = 21/303 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L +E+GL++ +++SY D ++L ++ + IR L + F++ + Sbjct: 8 FLGYLVVEKGLARNSVESYARDLSRYLGYVEQHAGGDPA--AIRPLHVAD---FLAHLKE 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYL--KKRKITTESNILNM-RNLKKSNSLPRALNEKQALTL 137 +G RS R+LS ++ F ++L + T ++I+ R L K LP+ L ++ Sbjct: 63 SGLGARSRARALSAVRMFHRFLLVEGYAETNPTSIIEAPRVLAK---LPQVLTGREV--- 116 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 +LL I+ R+ A+L LLY GLR+SE + L +++ L GKG+K Sbjct: 117 --EMLLAAPAGDAPIEVRDRAMLELLYATGLRVSELVGLRTRDVNTSAGYLMTVGKGEKE 174 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 R+VP+ S A++ Y L + P LF G+ + F I++ R G+ Sbjct: 175 RLVPMGESACAAVVLYLSSARIQLGRGGESPFLFLSRLGERMTRQAFWNIIKKRSRQAGI 234 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + HTLRHSFATHLL NG DLRS+Q++LGH LSTTQIYT+V + + +++Q Sbjct: 235 LKGISPHTLRHSFATHLLENGADLRSVQAMLGHADLSTTQIYTHVTRER----LKRLHEQ 290 Query: 317 THP 319 HP Sbjct: 291 FHP 293 >gi|19553231|ref|NP_601233.1| site-specific tyrosine recombinase XerC [Corynebacterium glutamicum ATCC 13032] gi|62390867|ref|YP_226269.1| site-specific tyrosine recombinase XerC [Corynebacterium glutamicum ATCC 13032] gi|41326206|emb|CAF20368.1| SITE-SPECIFIC RECOMBINASE [Corynebacterium glutamicum ATCC 13032] Length = 315 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 90/300 (30%), Positives = 158/300 (52%), Gaps = 21/300 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++ ++L++ G S T++ Y D L +A TI+ I S +R ++ Sbjct: 35 DFCEHLDLVVGRSAATIRGYRSD----LYAMAD------TIEDIDNFSLPTLRQWLGIAV 84 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + +L R + +K+F + +K + + K + LP+ L E+QA V+ Sbjct: 85 DEGKSRATLARRTASVKAFSSWAQKNGHLKADEAARLISPKITRDLPKILGEQQAGDFVE 144 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 N +++E +++ R+SAIL LLY G+R++E + +I D+ +R+ GKG+K R+ Sbjct: 145 NAA--STNEEEFL--RDSAILELLYATGMRVAELCGIDLSDIDYDRKMVRVLGKGNKERV 200 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 VP S KA+ + D+ D LF G+RG+ +N +R + + + G+ Sbjct: 201 VPFGESAHKALRNWLDV--RDEMTEDPKALFVGVRGQRINARQVRRIVDRAAKVTGVD-H 257 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H+LRH+ ATHLL G DLR +Q +LGH + TTQIYT+V++K ++E +++ HP Sbjct: 258 LSPHSLRHTAATHLLDGGADLRQVQELLGHSSMQTTQIYTHVSNKR----LLEAFNKAHP 313 >gi|291286773|ref|YP_003503589.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] gi|290883933|gb|ADD67633.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] Length = 312 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 93/310 (30%), Positives = 160/310 (51%), Gaps = 24/310 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ ++ E+G S T+++Y D ++L E I I+ + +R F++ Sbjct: 19 FLKFMQQEKGASDHTIKNYSRDLADLCMYL-----EDSAIDDIQDADFFTLRGFVAMLFD 73 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + +++R ++ +KSF +++K+ T ++ ++ KK + N + L+D Sbjct: 74 KGLAKSTIERKIACLKSFFAFMQKKNHTDDNPARMLKFPKKEQKAFKVFNIDSIIALLD- 132 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI--QGKGDKIR 198 + K R++ I L+YG G+R+SE + L +I D +RI +GKG K R Sbjct: 133 ----APDKDKPAGMRDALIQELMYGTGVRVSELVGLNLSDI--DFGGMRILVRGKGKKER 186 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYL 254 IVP+ + I +Y D+ D+ N LP +F G L +R + + + Sbjct: 187 IVPIADMHIEMINDYLDV-KMDI-CNGYLPDNEAIFINKFGSRLTDRSVRRIVEKYLKIA 244 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 GLP+ + H+ RHS+ATHLL G DLR+IQS+LGH L+TTQ YT++N ++ +Y Sbjct: 245 GLPMDFSPHSFRHSYATHLLEGGADLRTIQSLLGHESLTTTQKYTHLNLTE----LLRVY 300 Query: 315 DQTHPSITQK 324 D THP + K Sbjct: 301 DATHPFASGK 310 >gi|86140290|ref|ZP_01058849.1| putative site-specific recombinase [Leeuwenhoekiella blandensis MED217] gi|85832232|gb|EAQ50681.1| putative site-specific recombinase [Leeuwenhoekiella blandensis MED217] Length = 298 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 88/300 (29%), Positives = 156/300 (52%), Gaps = 14/300 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 ++ LE+ER SK T+ +Y+ D F +FL E ++ +++SY +RA+I Sbjct: 6 FINYLELERKYSKHTVLAYQKDLEAFFLFL----NEHYAVEDPKEVSYVYVRAWIVHLTD 61 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS+ R +S +K+F K+L+K S + ++LK + +E + T++ Sbjct: 62 VGVSHRSINRKISSLKAFFKFLQKTGDIEVSPLAKHKSLKIKKEIQVPFSETEVNTVIK- 120 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 +L + + + + R+ AI+ L Y G+R SE ++L +I DQ +++ GK +K RI+ Sbjct: 121 -MLQSGED--FSELRDLAIVTLFYATGMRRSELINLKVADIDFDQHNIKVLGKRNKERII 177 Query: 201 PLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 PL+P + + +Y + + ++ N L +G L R I + Sbjct: 178 PLIPWLEDGLKKYLSVRENYGVDKNSGFLLLTD-KGDKLYETFVCRIINRYFSRASQKTK 236 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T+ H LRH+FATHLL+NG DL +++ +LGH L++TQ+YT+ + G +Y HP Sbjct: 237 TSPHMLRHTFATHLLNNGADLNAVKELLGHASLASTQVYTHTSIAELG----RVYKNAHP 292 >gi|218283546|ref|ZP_03489536.1| hypothetical protein EUBIFOR_02126 [Eubacterium biforme DSM 3989] gi|218215814|gb|EEC89352.1| hypothetical protein EUBIFOR_02126 [Eubacterium biforme DSM 3989] Length = 291 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 92/291 (31%), Positives = 150/291 (51%), Gaps = 24/291 (8%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRSLKR 90 S+ T++SY+ D QF +E +T Q+I + F++ T + S+ R Sbjct: 19 SEKTIESYKNDLNQF--------KEYLTSQSIDSFESCDRLTFMNFLATLDHLKASSIAR 70 Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--LLHTSHE 148 +S +SF YL + E+ ++ ++ KKS +P L V+ + L++ ++ Sbjct: 71 KMSVYRSFYTYLAEYMGIIENPLIGIQTPKKSKQIPDFL-------FVEEIQEFLNSYND 123 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 K + R+ + ++Y CGLR+SE ++L + I + + I+GKGDK RIVP K Sbjct: 124 EKDDEYRDRILFTIMYACGLRVSECVNLEWKQIDLNNRIVHIRGKGDKDRIVPFYQGFEK 183 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 +LEY F I +F ++GK L+ Q + + +G+ + H LRHS Sbjct: 184 ELLEY--KSKFWTKYAIDDHVFVNLKGKSLSSRGVQYLMDKHATKIGMHMKLHPHMLRHS 241 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 FATHLL NG D+R +Q +LGH LSTTQIYT+V + +++ Y + HP Sbjct: 242 FATHLLDNGADIRVVQELLGHSSLSTTQIYTHVTTAQ----LVKAYKKAHP 288 >gi|227890941|ref|ZP_04008746.1| site-specific recombinase XerD [Lactobacillus salivarius ATCC 11741] gi|227867350|gb|EEJ74771.1| site-specific recombinase XerD [Lactobacillus salivarius ATCC 11741] Length = 298 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 90/296 (30%), Positives = 155/296 (52%), Gaps = 25/296 (8%) Query: 21 WLQNLE----IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 W++ + IE+ S TL++Y D + F+ F+ +E ++ +++ ++ A++S Sbjct: 5 WIEEFKKYLLIEKQYSDETLKAYSEDLQHFVDFI----DETGGAKSFKEIGSNDVHAYMS 60 Query: 77 KRRTQKIGDR----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 + DR S+ R +S +++F +L K ++T E+ ++ + SLPR EK Sbjct: 61 Y-----LYDRYEMTSISRMISSLRAFYNFLIKNELTDENPFAYVQLKRHPRSLPRFFYEK 115 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + L + T +T+ + R+ A+L LYG G+R+SE L +++ + + G Sbjct: 116 EMTALFEA----TEGDTQML-IRDRALLESLYGTGMRVSECTGLKMESVDLTNKKMLLHG 170 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQ 249 KGDK R+VP ++A+ Y++ L +F G PL P ++Q Sbjct: 171 KGDKDRLVPFGSYCQEALQRYFEQTRTPLMEKYHRDHDLVFVNHYGNPLTPAGVAYILKQ 230 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + + L S H LRH+FATHL+SNG DLR++Q +LGH LSTTQIYT+V ++ Sbjct: 231 IVKRSSLHTSIHPHELRHTFATHLMSNGADLRAVQELLGHSSLSTTQIYTHVTPEH 286 >gi|222151393|ref|YP_002560549.1| site-specific tyrosine recombinase XerD [Macrococcus caseolyticus JCSC5402] gi|222120518|dbj|BAH17853.1| site-specific tyrosine recombinase XerD [Macrococcus caseolyticus JCSC5402] Length = 295 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 89/300 (29%), Positives = 153/300 (51%), Gaps = 15/300 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L + IE+GLS+ T+ +Y D + FL E+ I +I + I F+ K + Sbjct: 8 FLHFIMIEKGLSENTIAAYRRDLNHYKKFL-----EESHIGSIDNIDRFTISLFLGKLKD 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 ++L R + ++ F ++ + K + + + K LP L ++ + Sbjct: 63 DGKSSKTLARVTASVRGFHQFALREKYAVKDPTIILEPPKFERKLPGILTVEEV-----D 117 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + L + +K R+ A+L LLY G+R+SE ++L ++ +++ GKG+K RIV Sbjct: 118 IFLSSPDTSKVTGRRDQAMLELLYATGMRVSELINLDVADVNTIMGFVKVTGKGNKERIV 177 Query: 201 PLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ + K + Y L + LF GK + F + ++Q++ G+ Sbjct: 178 PIGTHMIKLMDAYIANTRHKMLKKEMTDSLFLNFHGKRMTRQGFWKIMKQVQAESGIQKK 237 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T HTLRHSFATHLL NG DLR++Q +LGH +S+TQ+YT++++K + E+Y THP Sbjct: 238 LTPHTLRHSFATHLLENGADLRAVQEMLGHADISSTQLYTHIDTKQ----IREVYKNTHP 293 >gi|34222908|sp|Q8NNZ9|XERC_CORGL RecName: Full=Tyrosine recombinase xerC gi|21324798|dbj|BAB99421.1| Integrase [Corynebacterium glutamicum ATCC 13032] Length = 308 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 90/300 (30%), Positives = 158/300 (52%), Gaps = 21/300 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++ ++L++ G S T++ Y D L +A TI+ I S +R ++ Sbjct: 28 DFCEHLDLVVGRSAATIRGYRSD----LYAMAD------TIEDIDNFSLPTLRQWLGIAV 77 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + +L R + +K+F + +K + + K + LP+ L E+QA V+ Sbjct: 78 DEGKSRATLARRTASVKAFSSWAQKNGHLKADEAARLISPKITRDLPKILGEQQAGDFVE 137 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 N +++E +++ R+SAIL LLY G+R++E + +I D+ +R+ GKG+K R+ Sbjct: 138 NAA--STNEEEFL--RDSAILELLYATGMRVAELCGIDLSDIDYDRKMVRVLGKGNKERV 193 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 VP S KA+ + D+ D LF G+RG+ +N +R + + + G+ Sbjct: 194 VPFGESAHKALRNWLDV--RDEMTEDPKALFVGVRGQRINARQVRRIVDRAAKVTGVD-H 250 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H+LRH+ ATHLL G DLR +Q +LGH + TTQIYT+V++K ++E +++ HP Sbjct: 251 LSPHSLRHTAATHLLDGGADLRQVQELLGHSSMQTTQIYTHVSNKR----LLEAFNKAHP 306 >gi|257487154|ref|ZP_05641195.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331009225|gb|EGH89281.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 298 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 100/308 (32%), Positives = 151/308 (49%), Gaps = 32/308 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKRR 79 +L L +E+GLS T SY D +F + E + + + R++ I ++ R Sbjct: 12 FLDALWLEKGLSDNTRDSYRSD---LALFNGWLQERNVDLPSAGREV----ILDHLAWRV 64 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 RS R LSG + F +YL + K+ + L + + LP++L+E Sbjct: 65 ENAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADV----- 119 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 LL ++ I R+ A+L +LY CGLR++E +SLT + + Q LR+ GKG K R+ Sbjct: 120 EALLAAPDLSEAIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERL 179 Query: 200 VPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 VP+ +R A E P D+ LF RG + F I+ Sbjct: 180 VPMGEEAIVWVERYLRGARDELLGGKPSDV-------LFPSTRGDQMTRQTFWHRIKHQA 232 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 G+ S + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + Sbjct: 233 TVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----LQ 288 Query: 312 EIYDQTHP 319 E++ + HP Sbjct: 289 EMHAKHHP 296 >gi|255349272|ref|ZP_05381279.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis 70] gi|255503808|ref|ZP_05382198.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis 70s] Length = 300 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 97/299 (32%), Positives = 159/299 (53%), Gaps = 24/299 (8%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L ++RG+S L++Q+Y D FL ++ +I+ +++ + F+ K K Sbjct: 19 LSVDRGISPLSVQAYCQDVLLFL--------QRASIEATDRINQESVFLFVEKCHKAKES 70 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 + +L R L +K F +LK K+ + + + K LP L+ ++ +L+D L Sbjct: 71 ETTLARRLIALKVFFHFLKDAKMLDQQPFIEHPKIWKR--LPSILSTEEVNSLLDQPLNI 128 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + +T I +R++AILY Y G+R+SE L +I DD +R+ GKG K R+VP+ Sbjct: 129 PNLDTH-IASRDAAILYTFYATGIRVSELCDLCIGDISDD--FIRVTGKGRKTRLVPISI 185 Query: 205 SVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 ++AI Y L F L + P +F IRGK L+ + I + + Sbjct: 186 KAKQAIDAY--LSSFRDELQKKNPSEEHIFLSIRGKKLDRSCVWKRITFYAKLVTTK-RI 242 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H+LRH+FATHLL+N DLR IQ +LGH R+S+T+IYT+V S++ ++E + HP Sbjct: 243 SPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVASES----LIEKFHTYHP 297 >gi|110597063|ref|ZP_01385352.1| Phage integrase:Phage integrase, N-terminal SAM-like [Chlorobium ferrooxidans DSM 13031] gi|110341254|gb|EAT59719.1| Phage integrase:Phage integrase, N-terminal SAM-like [Chlorobium ferrooxidans DSM 13031] Length = 336 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 100/328 (30%), Positives = 164/328 (50%), Gaps = 21/328 (6%) Query: 9 IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-EKITIQTIRQLS 67 I + E K ++L L + LS TL++Y D Q+ FL + + + + Q+ Sbjct: 11 IPAAEEYKPLGDFLSALRSRKNLSPNTLKAYRGDLIQYFSFLLHHFRLDDLNGFALEQVK 70 Query: 68 YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127 ++R F+ + + RS+ R L+ +KSF +Y ++ T S + + +P Sbjct: 71 AVDVRLFMGALIERGVKPRSIARKLASVKSFYRYQQETGKITGSLFSFIATPRYPKRVPA 130 Query: 128 ALNEKQALTLVDNVLL----------HTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 L E+Q L + L + E +++ R+ +IL LLY CGLR+SE LT Sbjct: 131 FLTEQQTEKLFNEELSSGRAPFRQSEKSPIEEEFVSERDRSILELLYSCGLRVSELTGLT 190 Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP--FDLNLNIQLP----LFR 231 + D +++ GKG K RIVP+ + +A+ +Y+++ F ++L + +F Sbjct: 191 TDRLDLDGGYVKLTGKGRKQRIVPVGGAALQALKKYFEVRRNFFRISLKGRAESINYVFV 250 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291 +GK L P + QR R+ + H LRHSFATHLL++G DL S+ +LGH Sbjct: 251 TKKGKQLYPMLVQRLTRKYLVSVTEQKQKNPHILRHSFATHLLNSGADLTSVSEMLGHSN 310 Query: 292 LSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LSTT+IYT+V D + E+Y + HP Sbjct: 311 LSTTEIYTHVTF----DRLKEVYRKAHP 334 >gi|77457252|ref|YP_346757.1| site-specific tyrosine recombinase XerD [Pseudomonas fluorescens Pf0-1] gi|77381255|gb|ABA72768.1| integrase/recombinase [Pseudomonas fluorescens Pf0-1] Length = 298 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 99/309 (32%), Positives = 154/309 (49%), Gaps = 32/309 (10%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISKR 78 +L L +E+GLS T +Y D +F + ++ + I R+L I ++ R Sbjct: 11 QFLDALWLEKGLSDNTRDAYRSD---LALFNGWLQDKGLELINAGREL----ILDHLAWR 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q RS R LSG++ F +YL + K+ + L + + LP++L+E Sbjct: 64 LEQNYKPRSTARFLSGVRGFYRYLLREKLISVDPTLRVDMPQLGRPLPKSLSEADV---- 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL ++ I R+ A+L +LY CGLR++E +SLT + + Q LR+ GKG K R Sbjct: 120 -EALLKAPDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKER 178 Query: 199 IVPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 +VP+ +R E P D+ LF RG+ + F I+ Sbjct: 179 LVPMGEEAIVWVERYLRDGRGELLGGRPSDV-------LFPSQRGEQMTRQTFWHRIKHQ 231 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 + G+ S + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + Sbjct: 232 AKVAGISKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----L 287 Query: 311 MEIYDQTHP 319 +++ + HP Sbjct: 288 QDLHAKHHP 296 >gi|289525911|emb|CBJ15393.1| integrase/recombinase [Chlamydia trachomatis Sweden2] gi|296435499|gb|ADH17677.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis E/150] Length = 300 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 97/299 (32%), Positives = 159/299 (53%), Gaps = 24/299 (8%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L ++RG+S L++Q+Y D FL ++ +I+ +++ + F+ K K Sbjct: 19 LSVDRGISPLSVQAYCQDVLLFL--------QRASIEATDRINQESVFLFVEKCHKAKES 70 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 + +L R L +K F +LK K+ + + + K LP L+ ++ +L+D L Sbjct: 71 ETTLARRLIALKVFFHFLKDAKMLDQQPFIEHPKIWKR--LPSILSTEEVNSLLDQPLNI 128 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + +T I +R++AILY Y G+R+SE L +I DD +R+ GKG K R+VP+ Sbjct: 129 PNLDTH-IASRDAAILYTFYATGIRVSELCDLCIGDISDD--FIRVTGKGRKTRLVPISI 185 Query: 205 SVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 ++AI Y L F L + P +F IRGK L+ + I + + Sbjct: 186 KAKQAIDAY--LSSFRDELQKKNPSEEHVFLSIRGKKLDRSCIWKRITFYAKLVTTK-RI 242 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H+LRH+FATHLL+N DLR IQ +LGH R+S+T+IYT+V S++ ++E + HP Sbjct: 243 SPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVASES----LIEKFHTYHP 297 >gi|257068193|ref|YP_003154448.1| site-specific recombinase XerD [Brachybacterium faecium DSM 4810] gi|256559011|gb|ACU84858.1| site-specific recombinase XerD [Brachybacterium faecium DSM 4810] Length = 332 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 100/326 (30%), Positives = 159/326 (48%), Gaps = 38/326 (11%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 + +L +ERG S+ T+++Y + L L T E+IT+ +L T +R+++S R Sbjct: 16 FADHLHLERGRSEHTVRAYRREAAGLLAHL--RTVERITLP---ELDVTALRSWLSARAE 70 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 +L RS + +++F +L +R ++ LP L QA L+D Sbjct: 71 TGASASTLARSAASVRTFTTWLASTGRIPHDVGGRLRAPRRGRHLPTVLTGDQAGELLDG 130 Query: 141 VLLHTSHET----KWIDA---------------RNSAILYLLYGCGLRISEALSLTPQNI 181 + ++ + I A R++A+L LLY GLR+SE ++L I Sbjct: 131 LDGSARDDSAAPPREIAAAPRAEQDPRDRAVLLRDAAVLELLYSSGLRVSELVALDRSRI 190 Query: 182 MDDQSTLRIQGKGDKIRIVPL-LPSVRKAILEYYDLCPFDLNLNIQLP-------LFRGI 233 T+R++GKGD+ RIVP+ LP++ L+ ++ + L P LF G+ Sbjct: 191 DRQHGTVRVRGKGDRERIVPVGLPALEA--LQRWESEGRPVLLAAATPGTPPGDALFLGV 248 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 RG L + + + G+ T HTLRHS ATHL+ G DLRS+Q LGH L+ Sbjct: 249 RGGRLGDRAVRTLVDRHVAEAGISRHVTPHTLRHSAATHLVEGGADLRSVQDFLGHSSLA 308 Query: 294 TTQIYTNVNSKNGGDWMMEIYDQTHP 319 TTQIYT+V+++ + DQ HP Sbjct: 309 TTQIYTHVSAER----LRRTVDQAHP 330 >gi|158521685|ref|YP_001529555.1| tyrosine recombinase XerD [Desulfococcus oleovorans Hxd3] gi|158510511|gb|ABW67478.1| tyrosine recombinase XerD [Desulfococcus oleovorans Hxd3] Length = 297 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 95/306 (31%), Positives = 157/306 (51%), Gaps = 25/306 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR- 78 ++ L IE+GL++ +L++Y D +L +L Q I ++S T++ + Sbjct: 10 QYMSYLLIEKGLAENSLEAYGSDLAAYLDYL--------KAQNIDRVSETDMPVLLKYLI 61 Query: 79 --RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 R + + RS R L ++ F +YL + K+ S + KK LP L+ Sbjct: 62 FLRDRGLNKRSRSRHLVTLRGFYRYLAQEKVLAFSPAETIDLPKKGLRLPDVLS------ 115 Query: 137 LVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 VD V LL T R++A++ L+Y GLR+SE +++ Q++ + +R+ GKG Sbjct: 116 -VDEVKKLLAAPDTTTARGMRDAAMIELMYAAGLRVSELVAMKVQDVNTEVCFVRVFGKG 174 Query: 195 DKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 K R+VP+ ++ + Y P L L LF RG+P+ F + +++ Sbjct: 175 AKERVVPMGAYAKEKLEAYLSGARPALLKNYASLFLFVAWRGRPMTRQGFWKALKKYGLA 234 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ S HTLRHSFA+HLL G DLRS+Q +LGH +STTQIYT+V ++ + + Sbjct: 235 AGIRKSIKPHTLRHSFASHLLEGGADLRSVQIMLGHSDISTTQIYTHVTYRH----LKDA 290 Query: 314 YDQTHP 319 +++ HP Sbjct: 291 HEKFHP 296 >gi|50119715|ref|YP_048882.1| site-specific tyrosine recombinase XerD [Pectobacterium atrosepticum SCRI1043] gi|49610241|emb|CAG73684.1| integrase/recombinase [Pectobacterium atrosepticum SCRI1043] Length = 299 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 97/304 (31%), Positives = 156/304 (51%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ER L++ TL SY D R +LA + + + Q + +++AF++ R Sbjct: 10 EQFLDALWLERNLAENTLASYRLDLRSLAEWLAHHDNDLLHAQAL------DLQAFLADR 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ F +YL + K ++ + + K LP+ L+E Q L+ Sbjct: 64 IDGGYKATSSARLLSAMRRFFQYLYREKQRSDDPSAVLSSPKLPQRLPKDLSEAQVSALL 123 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + ++ R+ A+L +LY GLR+SE + LT ++ Q +R+ GKG+K R Sbjct: 124 DAPSIEQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVLGKGNKER 178 Query: 199 IVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VPL I EYY P+ LN LF R + + F I+ + Sbjct: 179 LVPLGEEAVYWI-EYYLEHGRPWLLNGQTLDVLFPSNRARQMTRQTFWHRIKHYAVLASI 237 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Sbjct: 238 DSAKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQ 293 Query: 316 QTHP 319 Q HP Sbjct: 294 QHHP 297 >gi|154252172|ref|YP_001412996.1| tyrosine recombinase XerD [Parvibaculum lavamentivorans DS-1] gi|154156122|gb|ABS63339.1| tyrosine recombinase XerD [Parvibaculum lavamentivorans DS-1] Length = 319 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 98/319 (30%), Positives = 157/319 (49%), Gaps = 21/319 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ L ERG ++ TL +YE D + F FL + + Q S +IR ++ Sbjct: 13 EAFLEMLSAERGAARNTLDAYERDLKDFSGFLVSRGRDLV------QASANDIRQYLENL 66 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q + + R LS I+ F +L + T+ ++ +++ LP+ L ++ L+ Sbjct: 67 SDQGLSASTAARRLSAIRQFHGFLFAEGVRTDDPCGSIEGPRRARPLPKTLTVEEVDALL 126 Query: 139 DNVLLHTSHETK------WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 T+ + AR ++ +LY GLR+SE + L + + L + G Sbjct: 127 SAAQRAEDGRTQEESVLAYKRARLVCLMEVLYATGLRVSELVGLPLSAVRGQERFLAVSG 186 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF--RGIRGKPLNPGVFQRYIRQL 250 KG + R+VPL + R AI Y L L + LF RG +G L F + ++ L Sbjct: 187 KGGRERLVPLSETARAAIDAYLPLRSLRLGEQVSPWLFPSRGRQGH-LTRHRFAQLLKDL 245 Query: 251 RRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 GL S + HTLRH+FA+HLL+NG DLR++Q +LGH +STTQIYT+V D Sbjct: 246 AVAAGLDASRVSPHTLRHAFASHLLANGADLRAVQQMLGHADISTTQIYTHVL-----DE 300 Query: 310 MMEIYDQTHPSITQKDKKN 328 ++ QTH + +K K + Sbjct: 301 RLKELVQTHHPLAKKGKAS 319 >gi|325954400|ref|YP_004238060.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922] gi|323437018|gb|ADX67482.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922] Length = 294 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 93/299 (31%), Positives = 159/299 (53%), Gaps = 28/299 (9%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 E L E Q +L+ +E+ ++ T++SY D ++ F +E +Y + Sbjct: 5 ESLLEYQTYLK---LEKHMANNTIESYMRDIKKLQQFSPLLPQEH---------TYDSLV 52 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F+ ++ RS R LSG+KS+ YL+ +I ++ + + K LP L EK Sbjct: 53 EFVHAM-AKEYSQRSQARILSGLKSYFNYLQYEEIRQDNPTELLESPKIGTKLPDVLTEK 111 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + LVD + L +K RN AI+ +LYGCGLR++E ++L ++ ++ +R+ G Sbjct: 112 EIDRLVDVIDL-----SKPEGERNRAIIEMLYGCGLRVTELVNLRISDLFFEEGYIRVLG 166 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP------LFRGIRGKPLNPGVFQRY 246 KG+K R+VP+ P ++Y DL ++ + + LF RG+ + + Sbjct: 167 KGNKERLVPISPYT----IKYIDLYRNEIRKHQPIQPGYEDILFLNRRGRNITRVMIFTI 222 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 I++L G+ + + HT RHSFATHLL NG DLR+IQ +LGH + TT++YT+++ ++ Sbjct: 223 IKELSIIAGIQKNISPHTFRHSFATHLLKNGADLRAIQQMLGHENIVTTEVYTHIDQEH 281 >gi|296161400|ref|ZP_06844207.1| tyrosine recombinase XerC [Burkholderia sp. Ch1-1] gi|295888386|gb|EFG68197.1| tyrosine recombinase XerC [Burkholderia sp. Ch1-1] Length = 307 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 87/317 (27%), Positives = 158/317 (49%), Gaps = 31/317 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L NLE ER LS TL+ Y + + + + + L+ +IR +S+ Sbjct: 10 YLSNLEHERRLSAHTLRGYTHELEELKLL--------AKGRPLESLTAVDIRGAVSRAHA 61 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS+ LS ++F ++L R + + +R K++ +LP+AL+ A L+++ Sbjct: 62 GGLTARSISHRLSAWRAFYRWLAGRVDLPANPVATVRAPKQAKTLPKALSVDDATRLMES 121 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD------------DQSTL 188 + R+ A+L L Y GLR++E + L + D D + + Sbjct: 122 PPAASPEGL-----RDHAMLELFYSSGLRLAELVGLDAR-FADADGYRSAGWLKLDSAEV 175 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 + GKG++ R+VP+ +A+ + + + + PLF RG L+P V + ++ Sbjct: 176 EVLGKGNRRRVVPVGSKALEALGAWLAVRDQMVKHDPH-PLFLSARGNRLSPNVVRERVK 234 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 + G+P + H LRHSFATH+L + GDLR++Q +LGH ++ TQ+YT ++ ++ Sbjct: 235 RAALVAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTALDFQH--- 291 Query: 309 WMMEIYDQTHPSITQKD 325 + +YDQ HP ++D Sbjct: 292 -LAHVYDQAHPRAKKRD 307 >gi|50085725|ref|YP_047235.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1] gi|49531701|emb|CAG69413.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1] Length = 305 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 91/306 (29%), Positives = 164/306 (53%), Gaps = 24/306 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL+ I+ S+ TL +Y+ D F F EK ++ + Q+ +++R +++ R Sbjct: 11 WLKERMIQNQ-SEHTLNAYQRDLTDFFDFC-----EKRKLELM-QVEASDLREYLAYRVE 63 Query: 81 QK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q + S++R LS I+ F+K+ ++ + + + + + +KS LP ++ + V Sbjct: 64 QSNLSSSSIQRHLSSIRQFMKWAQQSQFLNMNPVEDFKLKRKSRPLPGMID----IETVH 119 Query: 140 NVLLHTSHETK-----WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 +L T+ E + W+ R+ AIL LLY GLR++E L ++ ++ LR+ GKG Sbjct: 120 QILDQTAPEDELGTQLWL--RDKAILELLYSSGLRLAELQGLKLIDLDFNRQLLRVTGKG 177 Query: 195 DKIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 +K R++P +++++++ ++ + Q PLF G L P + ++ Sbjct: 178 NKTRVIPFGKKAKQSLIDWLNVYRLWKGQFTQQDPLFVSQNGGALTPRQIENRVKHQALR 237 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ + H LRH FA+H+LS GDLRS+Q +LGH LSTTQIYT+++ D + ++ Sbjct: 238 AGVNVDLHPHLLRHCFASHMLSASGDLRSVQEMLGHSNLSTTQIYTHIDF----DHLAQV 293 Query: 314 YDQTHP 319 YD+ HP Sbjct: 294 YDRAHP 299 >gi|259507532|ref|ZP_05750432.1| tyrosine recombinase XerC [Corynebacterium efficiens YS-314] gi|259164917|gb|EEW49471.1| tyrosine recombinase XerC [Corynebacterium efficiens YS-314] Length = 296 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 88/307 (28%), Positives = 153/307 (49%), Gaps = 21/307 (6%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 ++L+ +++ L + G S T++ Y D R TI + + + +R Sbjct: 9 QMLEAIEDFCDYLILVVGRSDATVRGYRSDLRHM----------AATIPDLTEFTLPNLR 58 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 A++ + + +L R + +KSF + K + + + + K + +LPR L E Sbjct: 59 AWLGRAVEEGKSRATLARRTASVKSFSTWAVKNGLISGDEAARLVSPKVTRNLPRVLGEV 118 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 QA + + T E + R+SAIL LLY G+R+SE L ++ + +R+ G Sbjct: 119 QAGEFMGSAAADTEDEFR----RDSAILELLYATGMRVSELCGLDLGDVDHHRRMVRVLG 174 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 KGDK R++P + A+ ++ L D ++ +F G+RG ++ +R + + + Sbjct: 175 KGDKERMIPFGKAAADALEQW--LEARDRMAKVEDAMFVGVRGGRIDARQIRRIVDRTAQ 232 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 G + H+LRH+ ATHLL G DLR +Q +LGH L TTQIYT+V+S+ ++E Sbjct: 233 VAGAD-HLSPHSLRHTAATHLLDGGADLRQVQEMLGHSSLQTTQIYTHVSSQR----LLE 287 Query: 313 IYDQTHP 319 + Q HP Sbjct: 288 AFRQAHP 294 >gi|330818646|ref|YP_004362351.1| Site-specific recombinase XerC [Burkholderia gladioli BSR3] gi|327371039|gb|AEA62395.1| Site-specific recombinase XerC [Burkholderia gladioli BSR3] Length = 306 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 93/324 (28%), Positives = 156/324 (48%), Gaps = 45/324 (13%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L+ R LS+ TL+ Y + L + + L ++R +++ Sbjct: 9 YLSYLQHVRQLSEHTLRGYAHELDALLAL--------ADGRPLASLGAADMRGAVARAHA 60 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS+ LS ++F ++ R + + +R K++ +LP+AL+ A TL+++ Sbjct: 61 GGLSARSIAHRLSAWRAFYRWYALRVEMPANPVATVRAPKRAKTLPKALSVDDANTLMES 120 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-----------QSTLR 189 T R+ AIL L Y GLR++E + L D Q+ + Sbjct: 121 PFPDTPEGL-----RDHAILELFYSSGLRLAELVGLDVHYTQADGYRSASWLDREQAEVS 175 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--------PLFRGIRGKPLNPG 241 + GKG K R VP+ RKA L D L ++ PLF +RGK ++PG Sbjct: 176 VLGKGGKERKVPV---GRKA------LEALDAWLAVRAGWVRTDPHPLFLSVRGKRMSPG 226 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 V + +++ G+P + H LRHSFATH+L + GDLR++Q +LGH +S TQ+YT++ Sbjct: 227 VVRERVKRAALVAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSL 286 Query: 302 NSKNGGDWMMEIYDQTHPSITQKD 325 + ++ + IYD HP ++D Sbjct: 287 DFQH----LARIYDSAHPRAKKRD 306 >gi|330964079|gb|EGH64339.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. actinidiae str. M302091] Length = 298 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 100/309 (32%), Positives = 150/309 (48%), Gaps = 32/309 (10%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKR 78 +L L +E+GLS T SY D +F + E + + + R++ I ++ R Sbjct: 11 QFLDTLWLEKGLSDNTRDSYRSD---LALFNGWLQERNVDLPSAGREV----ILDHLAWR 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 RS R LSG + F +YL + K+ L + + LP++L+E Sbjct: 64 VDNAYKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLPKSLSEADV---- 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL ++ I R+ A+L +LY CGLR++E +SLT + + Q LR+ GKG K R Sbjct: 120 -EALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKER 178 Query: 199 IVPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 +VP+ +R A E P D+ LF RG + F I+ Sbjct: 179 LVPMGEEAIVWVERYMRGARDELLGGKPSDV-------LFPSTRGDQMTRQTFWHRIKHQ 231 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ S + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + Sbjct: 232 ATVAGISKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----L 287 Query: 311 MEIYDQTHP 319 E++ + HP Sbjct: 288 QEMHAKHHP 296 >gi|290476402|ref|YP_003469307.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004] gi|289175740|emb|CBJ82543.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004] Length = 318 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 94/303 (31%), Positives = 157/303 (51%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + +E+ L++ TL SY D + +L + + +++++I E++ F+++R Sbjct: 29 EQFLDTIWLEKDLAENTLSSYRLDLQALNNWLVYSGHDLLSVESI------ELQLFLAER 82 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K+ + + K LP+ L+EKQ Sbjct: 83 VDSGYKASSSARLLSAMRRLFQYLYREKMRLDDPTALLSAPKLPKRLPKDLSEKQV---- 138 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL+T + I+ R+ A+L +LY CGLR+SE + LT ++ Q +R+ GKG+K R Sbjct: 139 -GDLLNTPLTDQPIELRDKAMLEVLYACGLRVSELVGLTLSDMSLRQGVVRVVGKGNKER 197 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL + +Y + P+ LN + F RG + F I+ G+ Sbjct: 198 LVPLGEEALYWLEKYLEYGRPWLLNGSASDVFFPSKRGTQMTRQTFWHRIKHYAVLSGID 257 Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT V ++ + ++ Q Sbjct: 258 TERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTYVATER----LKMLHQQ 313 Query: 317 THP 319 HP Sbjct: 314 HHP 316 >gi|150026059|ref|YP_001296885.1| tyrosine recombinase XerD [Flavobacterium psychrophilum JIP02/86] gi|149772600|emb|CAL44083.1| Tyrosine recombinase XerD [Flavobacterium psychrophilum JIP02/86] Length = 299 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 106/303 (34%), Positives = 156/303 (51%), Gaps = 28/303 (9%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLA----FYTEEKITIQTIRQLSYTEIRAFISKRRT 80 L+IERGLSK ++ +Y D + +L+ + I QTI+Q Y ISK Sbjct: 14 LKIERGLSKNSVANYVLDIEKLNHYLSDNNIHVSPVNINEQTIQQFIYE-----ISK--- 65 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS R++SG+KSF YL ++ + + + LP LN + L+ Sbjct: 66 -SVNPRSQARTISGLKSFFSYLIFEDYRPDNPLALIETPRLGRKLPDTLNIEDIDKLIAA 124 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + L T+ RN A+L LY CGLR+SE +SL ++ + ++I GKG+K R V Sbjct: 125 INLTTNE-----GERNRAMLETLYACGLRVSELVSLKISDLFFAEGFIKITGKGNKQRFV 179 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQL----PLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 P+ +K I E Y +L L+IQ LF RG+ L + I+ L +GL Sbjct: 180 PISEYTQKYI-EIYKNTDRNL-LSIQKGHEDTLFLNRRGRQLTRAMIFTIIKNLAVEIGL 237 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + HT RHSFATHLL NG DLRSIQ +LGH ++TT+IY +V+ K+ + ++ Sbjct: 238 NKVISPHTFRHSFATHLLENGADLRSIQLMLGHESITTTEIYMHVDRKH----LSQVMQT 293 Query: 317 THP 319 HP Sbjct: 294 FHP 296 >gi|15605600|ref|NP_220386.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis D/UW-3/CX] gi|255311708|ref|ZP_05354278.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis 6276] gi|255318009|ref|ZP_05359255.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis 6276s] gi|34222769|sp|O84872|XERD_CHLTR RecName: Full=Tyrosine recombinase xerD gi|3329338|gb|AAC68462.1| Integrase/recombinase [Chlamydia trachomatis D/UW-3/CX] gi|296436423|gb|ADH18597.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis G/9768] gi|296437354|gb|ADH19524.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis G/11222] gi|296438282|gb|ADH20443.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis G/11074] gi|297140783|gb|ADH97541.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis G/9301] Length = 300 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 97/299 (32%), Positives = 159/299 (53%), Gaps = 24/299 (8%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L ++RG+S L++Q+Y D FL ++ +I+ +++ + F+ K K Sbjct: 19 LSVDRGISPLSVQAYCQDVLLFL--------QRASIEATDRINQESVFLFVEKCHKAKES 70 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 + +L R L +K F +LK K+ + + + K LP L+ ++ +L+D L Sbjct: 71 ETTLARRLIALKVFFHFLKDAKMLDQQPFIEHPKIWKR--LPSILSTEEVNSLLDQPLNI 128 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + +T I +R++AILY Y G+R+SE L +I DD +R+ GKG K R+VP+ Sbjct: 129 PNLDTH-IASRDAAILYTFYATGIRVSELCDLCIGDISDD--FIRVTGKGRKTRLVPISI 185 Query: 205 SVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 ++AI Y L F L + P +F IRGK L+ + I + + Sbjct: 186 KAKQAIDAY--LSSFRDELQKKNPSEEHVFLSIRGKKLDRSCVWKRITFYAKLVTTK-RI 242 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H+LRH+FATHLL+N DLR IQ +LGH R+S+T+IYT+V S++ ++E + HP Sbjct: 243 SPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVASES----LIEKFHTYHP 297 >gi|241764927|ref|ZP_04762927.1| integrase family protein [Acidovorax delafieldii 2AN] gi|241365489|gb|EER60254.1| integrase family protein [Acidovorax delafieldii 2AN] Length = 327 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 92/320 (28%), Positives = 151/320 (47%), Gaps = 30/320 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT-IRQLSYTEIRAFISKRR 79 +L++ +E+ L+ TL Y D + F A +Q + QL IR F+++ Sbjct: 18 YLEHARVEKRLAARTLTLYALDLDKLARFAA-------AVQVPLLQLGSAHIRRFVAQMH 70 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + R + LSG + F + ++ + + + + ++R + LP+AL A+ L + Sbjct: 71 SGGRSGRGIALILSGWRGFFAWAGRQGLISHNPVQDVRAPRAPKPLPKALGVDDAVRLAE 130 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR---------- 189 S W++AR++A++ LLYGCGLR+ E + L D + R Sbjct: 131 ---YDHSGADPWLEARDAAMVELLYGCGLRVGELVGLDAAPHADSRRQGRGWVDLEAGEA 187 Query: 190 -IQGKGDKIRIVPL--LPSVRKAILEYYDLCPF--DLNLNIQLPLFRGIRGKPLNPGVFQ 244 + GKG K R VP+ PF D + + LF G RG L Sbjct: 188 HVFGKGSKRRSVPVGAAAMAALRAWLALRAAPFGGDASPRLDAALFVGRRGVRLTAQSIW 247 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 +RQ + GL H LRHSFA+HLL + GDLR++Q +LGH ++TTQ+YT ++ + Sbjct: 248 LRLRQRSQQAGLTTPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTRLDFQ 307 Query: 305 NGGDWMMEIYDQTHPSITQK 324 + + ++YD HP +K Sbjct: 308 H----LAKVYDAAHPRARRK 323 >gi|116494854|ref|YP_806588.1| integrase [Lactobacillus casei ATCC 334] gi|191638361|ref|YP_001987527.1| Tyrosine recombinase xerD [Lactobacillus casei BL23] gi|227535149|ref|ZP_03965198.1| site-specific DNA tyrosine recombinase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631553|ref|ZP_04674584.1| tyrosine recombinase xerD [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066416|ref|YP_003788439.1| integrase [Lactobacillus casei str. Zhang] gi|116105004|gb|ABJ70146.1| tyrosine recombinase XerD subunit [Lactobacillus casei ATCC 334] gi|190712663|emb|CAQ66669.1| Tyrosine recombinase xerD [Lactobacillus casei BL23] gi|227187194|gb|EEI67261.1| site-specific DNA tyrosine recombinase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239526018|gb|EEQ65019.1| tyrosine recombinase xerD [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438823|gb|ADK18589.1| Integrase [Lactobacillus casei str. Zhang] gi|327382389|gb|AEA53865.1| hypothetical protein LC2W_1532 [Lactobacillus casei LC2W] gi|327385590|gb|AEA57064.1| hypothetical protein LCBD_1567 [Lactobacillus casei BD-II] Length = 293 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 91/306 (29%), Positives = 154/306 (50%), Gaps = 27/306 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF-----YTEEKITIQTIRQLSYTEIRAF 74 +++ L +ERGL+K T SY+ D F +LA + EE TIQ+ F Sbjct: 7 DFIHYLNVERGLAKATQTSYQQDLITFSAWLAARKRRTFPEEFGTIQS-----------F 55 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 + ++ K S+ R +S ++ F ++L + + + + K++ LP L+ ++ Sbjct: 56 LKEQNATK-APASVSRMISALRKFYRFLLREGAISADPMTKIDTPKRAQHLPATLSSQEV 114 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 + L+ K + R+ AI L+Y GLR+SE + L + + L++ GKG Sbjct: 115 -----DALMAKPDTDKPLGLRDRAIFELMYATGLRVSEVVDLRLDQLHLAMNLLQVTGKG 169 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRY 253 DK R+VP+ P + + Y L +Q +F G P+ + ++ Sbjct: 170 DKERLVPISPQATQWVDRYLQEARPKLLKRVQPKNVFVNFHGGPMTRQGIWKNLKAYIAS 229 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 +G+ T HTLRHSFAT LL NG DLR +Q +LGH +STTQIYT++++++ ++ + Sbjct: 230 IGIEKDVTPHTLRHSFATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQH----LVAV 285 Query: 314 YDQTHP 319 Y +THP Sbjct: 286 YHKTHP 291 >gi|326693050|ref|ZP_08230055.1| tyrosine recombinase XerC [Leuconostoc argentinum KCTC 3773] Length = 302 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 88/294 (29%), Positives = 153/294 (52%), Gaps = 14/294 (4%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 KE Q + L+ ER S LT+++Y D F FLA E T R + ++R ++ Sbjct: 4 KEAQLYQDYLQAERQYSDLTVKAYLTDIEAFTTFLA----ENGGFTTYRAVQTLDVRVYL 59 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 ++ +++ ++ R +S ++ F +++ + +++ N+ K + LP E + Sbjct: 60 NELYERQLARTTIARKISSLRMFFQFMLANQFVSDNPFENVALRKHQSHLPEFFYESELT 119 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 TL + + + E W RN+A+L LY G R++E +LT + Q + I GKG+ Sbjct: 120 TLFE--VAYAEDEPLW--QRNAALLEFLYATGARVAEIANLTITQLDFAQRLVLIHGKGN 175 Query: 196 KIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLR 251 K R VP +A+ +Y ++L P + Q P +F RG+P+ + +L Sbjct: 176 KDRYVPFGHFAAQAMTQYLHELRP--QLVAKQAPHDRVFVNHRGEPITAAGITYILNELM 233 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + L + H LRH+FATHLL++G D+R++Q +LGH LSTTQ+YT+V ++ Sbjct: 234 KKSALTGTIHPHMLRHTFATHLLNHGADMRTVQELLGHVNLSTTQMYTHVTRES 287 >gi|46143544|ref|ZP_00135036.2| COG4974: Site-specific recombinase XerD [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126209006|ref|YP_001054231.1| site-specific tyrosine recombinase XerD [Actinobacillus pleuropneumoniae L20] gi|303253035|ref|ZP_07339187.1| site-specific tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307246462|ref|ZP_07528535.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307248587|ref|ZP_07530602.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307255445|ref|ZP_07537252.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307257614|ref|ZP_07539374.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307259897|ref|ZP_07541611.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307262027|ref|ZP_07543682.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|126097798|gb|ABN74626.1| tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|302648099|gb|EFL78303.1| site-specific tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306852666|gb|EFM84898.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306854937|gb|EFM87125.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306861629|gb|EFM93616.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306863917|gb|EFM95840.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306866067|gb|EFM97941.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306868310|gb|EFN00132.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 297 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 96/303 (31%), Positives = 153/303 (50%), Gaps = 18/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L E GLS+ T +Y D F +E T + L + +++AF+ R Sbjct: 9 EQFLDTLWQEHGLSENTSAAYRLDLESF-------SEWLPTPKAFLTLDHFDLQAFLGGR 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ F ++L + L + + +K LP++L+E+Q + L+ Sbjct: 62 LELGYKATSSARMLSCLRKFFRFLYTENYRQDDPTLTLTSPRKPAHLPKSLSEEQVMDLL 121 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + + I+ R+ A+L LLY GLR+SE +SL+ N+ Q +R+ GKGDK R Sbjct: 122 D-----SPNTLDPIELRDKAMLELLYATGLRVSELVSLSIDNLSLRQGVVRVVGKGDKER 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ I E++ L N+Q + F RG+ + F I+ G+ Sbjct: 177 LVPIGEEAGYWIQEFFRYGRAILLNNLQSDVVFPSRRGQQMTRQTFWHRIKHYAVLAGID 236 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHL+++G DLR +Q +LGH LSTTQIYT+V + ++ Q Sbjct: 237 SEKLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKAR----LKSLHQQ 292 Query: 317 THP 319 HP Sbjct: 293 FHP 295 >gi|33151294|ref|NP_872647.1| site-specific tyrosine recombinase XerD [Haemophilus ducreyi 35000HP] gi|71153413|sp|Q7VPN8|XERD_HAEDU RecName: Full=Tyrosine recombinase xerD gi|33147514|gb|AAP95036.1| integrase/recombinase XerD [Haemophilus ducreyi 35000HP] Length = 297 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 98/303 (32%), Positives = 156/303 (51%), Gaps = 18/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +E+ LS TL SY D +F A+ E + + L++T+++ F+ R Sbjct: 9 EQFLDTLWLEQSLSHNTLLSYRLDLE---LFSAWLVEPRAFLT----LTHTDLQLFLGDR 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S R +S ++ F ++L K + + + +K LP++L+E+Q + L+ Sbjct: 62 LDKGYKSSSSARIISCLRKFFRFLCLEKYRLDDPTSMLISPRKRVQLPKSLSEEQVMDLL 121 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + I+ R+ A+L LLY GLR++E +SLT N+ Q +R+ GKGDK R Sbjct: 122 D-----APNPLDPIELRDKAMLELLYATGLRVTELISLTIDNLNLRQGVVRVIGKGDKER 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ I E++D L + Q LF R K + F I+ G+ Sbjct: 177 LVPIGEEASYWIQEFFDYGRMILLSDQQSDVLFPSRRAKQMTRQTFWHRIKYYAILAGID 236 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHL+++G DLR +Q +LGH LSTTQIYT+V + I+ Q Sbjct: 237 AEKLSPHVLRHAFATHLINHGADLRVVQMLLGHSDLSTTQIYTHVAKTR----LKSIHKQ 292 Query: 317 THP 319 HP Sbjct: 293 FHP 295 >gi|189425748|ref|YP_001952925.1| tyrosine recombinase XerD [Geobacter lovleyi SZ] gi|189422007|gb|ACD96405.1| tyrosine recombinase XerD [Geobacter lovleyi SZ] Length = 295 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 101/303 (33%), Positives = 162/303 (53%), Gaps = 21/303 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L +E+GLS T +Y D ++L +L E++ T + ++I F+ K R Sbjct: 8 FLAWLTVEKGLSANTRSAYAADLGRYLDYL-----ERLQRDTPDSIQPSDIAEFLGKERE 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYL--KKRKITTESNILNM-RNLKKSNSLPRALNEKQALTL 137 + + RS R LS I+ ++L ++ +T S I+ R LKK LP L+ + Sbjct: 63 RGLAPRSRARLLSAIRMLHRFLLIERYAVTNPSAIIEAPRPLKK---LPTFLSMAE---- 115 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 VD LL +H ++ D R+ A+L LLY GLR+SE ++L + + + L GKG+K Sbjct: 116 VDR-LLGATHGSRSEDIRDRAMLELLYATGLRVSELVNLKQREVNLEIGYLMTIGKGNKE 174 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 R++P+ + + +Y + + +Q LF G+ + F I++ G+ Sbjct: 175 RLIPIGAAACHRVADYLEQVRSKQDPEGLQPQLFLSRLGEAMTRQAFWNIIKKRALLAGV 234 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 S + HTLRHSFATHLL+NG DLRS+Q +LGH LSTTQIYT+V + + +++ + Sbjct: 235 RTSISPHTLRHSFATHLLANGADLRSVQIMLGHADLSTTQIYTHVTRER----LKQLHRE 290 Query: 317 THP 319 HP Sbjct: 291 LHP 293 >gi|298505931|gb|ADI84654.1| integrase/recombinase XerD [Geobacter sulfurreducens KN400] Length = 295 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 98/303 (32%), Positives = 158/303 (52%), Gaps = 21/303 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L +E+GL++ +++SY D ++L ++ + IR L + F++ + Sbjct: 8 FLGYLVVEKGLARNSVESYARDLSRYLGYVEQHAGGDPA--AIRPLHVAD---FLAHLKE 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYL--KKRKITTESNILNM-RNLKKSNSLPRALNEKQALTL 137 +G RS R+LS ++ F ++L + T ++I+ R L K LP+ L ++ Sbjct: 63 SGLGARSRARALSAVRMFHRFLLVEGYAETNPTSIIEAPRVLAK---LPQVLTGREV--- 116 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 +LL I+ R+ A+L LLY GLR+SE + L +++ L GKG+K Sbjct: 117 --EMLLAAPAGDAPIEVRDRAMLELLYATGLRVSELVGLRTRDVNTSAGYLMTVGKGEKE 174 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 R+VP+ S A++ Y L + P LF G+ + F I++ R G+ Sbjct: 175 RLVPMGESACAAVVLYLSSARTQLGRGGESPFLFLSRLGERMTRQAFWNIIKKRSRQAGI 234 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + HTLRHSFATHLL NG DLRS+Q++LGH LSTTQIYT+V + + +++Q Sbjct: 235 LKGISPHTLRHSFATHLLENGADLRSVQAMLGHADLSTTQIYTHVTRER----LKRLHEQ 290 Query: 317 THP 319 HP Sbjct: 291 FHP 293 >gi|21232926|ref|NP_638843.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767001|ref|YP_241763.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv. campestris str. 8004] gi|188990094|ref|YP_001902104.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv. campestris str. B100] gi|34222915|sp|Q8P550|XERC_XANCP RecName: Full=Tyrosine recombinase xerC gi|81307012|sp|Q4UYY0|XERC_XANC8 RecName: Full=Tyrosine recombinase xerC gi|254799362|sp|B0RNK3|XERC_XANCB RecName: Full=Tyrosine recombinase xerC gi|21114762|gb|AAM42767.1| site-specific recombinase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572333|gb|AAY47743.1| site-specific recombinase [Xanthomonas campestris pv. campestris str. 8004] gi|167731854|emb|CAP50038.1| site-specific tyrosine recombinase [Xanthomonas campestris pv. campestris] Length = 322 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 91/310 (29%), Positives = 154/310 (49%), Gaps = 19/310 (6%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 L + +L +L+IER +S TL +Y D + + + E + QL ++R F Sbjct: 28 LSAVEPFLAHLQIERQVSAHTLDAYRRDLAALIGWASAQGSEDVA-----QLDSAQLRKF 82 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 ++ + + +SL+R LS +S+ +L K S +R K LP+ L+ +A Sbjct: 83 VTAEHRRGLSPKSLQRRLSACRSYYAWLLKHGRIATSPAAALRAPKAPRKLPQVLDADEA 142 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 + LV+ + R+ A+L L Y GLR+SE +L +++ D + + GKG Sbjct: 143 VRLVEVP------TDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVTVLGKG 196 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 K R+VP+ A+ + D + Q +F G G ++ Q I+QL Sbjct: 197 GKQRLVPVGSHAVAALRAWQR----DSGGSAQTHVFPGRAGGAISQRAVQIRIKQLAVRQ 252 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ H LRHSFA+H+L + GDLR +Q +LGH ++TTQIYT+++ ++ + ++Y Sbjct: 253 GMFKHVHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQH----LAKVY 308 Query: 315 DQTHPSITQK 324 D HP +K Sbjct: 309 DAAHPRAKRK 318 >gi|320107747|ref|YP_004183337.1| integrase family protein [Terriglobus saanensis SP1PR4] gi|319926268|gb|ADV83343.1| integrase family protein [Terriglobus saanensis SP1PR4] Length = 311 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 91/281 (32%), Positives = 147/281 (52%), Gaps = 18/281 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT-IRQLSYTEIRAFISKRRTQKI 83 L +ERGL LTL+SY+ D L ++E ++ T + Q + I +F++ R Sbjct: 20 LRVERGLRPLTLESYQGD-------LYAFSEHLDSLHTSLLQATQENIASFMAHLREHDQ 72 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD--NV 141 RS+ R LS ++ F ++L K LN+ + LP++L E + ++D V Sbjct: 73 ESRSIARKLSCLRGFYRWLLLDKRIHHDPTLNIESPASWKVLPKSLAESEVREMLDRTGV 132 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 H S + + R+ A++ LLY GLR +E L +++ DQ +++GKGDK RIVP Sbjct: 133 AAH-SQQAGALSLRDHALMNLLYAGGLRAAEICDLRVEDLHLDQQRAQVRGKGDKERIVP 191 Query: 202 LLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 L + +A+ Y P + +Q LF +RGKPL ++ + Sbjct: 192 LADTAVQALEVYLQRGRPQLVAKGLQRALFLSVRGKPLTNQTVWSIVKSTNQL------A 245 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + H LRHS ATH++ +G DLRS+Q++LGH + TTQ+YT++ Sbjct: 246 SPHKLRHSCATHMVEHGADLRSVQTLLGHADIVTTQVYTHL 286 >gi|255507490|ref|ZP_05383129.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis D(s)2923] gi|296439216|gb|ADH21369.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis E/11023] Length = 300 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 97/299 (32%), Positives = 158/299 (52%), Gaps = 24/299 (8%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L ++RG+S L++Q+Y D FL ++ +I+ +++ + F+ K K Sbjct: 19 LSVDRGISPLSVQAYCQDVLLFL--------QRASIEATDRINQESVFLFVEKCHKAKES 70 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 + +L R L +K F +LK K+ + + + K LP L+ ++ +L+D L Sbjct: 71 ETTLARRLIALKVFFHFLKDAKMLDQQPFIEHPKIWKR--LPSILSTEEVNSLLDQPLNI 128 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + +T I +R++AILY Y G+R+SE L +I DD +R+ GKG K R+VP+ Sbjct: 129 PNLDTH-IASRDAAILYTFYATGIRVSELCDLCIGDISDD--FIRVTGKGRKTRLVPISI 185 Query: 205 SVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 ++AI Y L F L + P +F IRGK L+ + I + + Sbjct: 186 KAKQAIDAY--LSSFRDELQKKNPSEEHVFLSIRGKKLDRSCVWKRITFYAKLVTTK-RI 242 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H+LRH+FATHLL N DLR IQ +LGH R+S+T+IYT+V S++ ++E + HP Sbjct: 243 SPHSLRHAFATHLLDNHADLRIIQEMLGHSRISSTEIYTHVASES----LIEKFHTYHP 297 >gi|187922354|ref|YP_001893996.1| site-specific tyrosine recombinase XerC [Burkholderia phytofirmans PsJN] gi|187713548|gb|ACD14772.1| tyrosine recombinase XerC [Burkholderia phytofirmans PsJN] Length = 307 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 89/323 (27%), Positives = 159/323 (49%), Gaps = 43/323 (13%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L NLE ER LS TL+ Y + + ++ + + L+ +IR +S+ Sbjct: 10 YLSNLEHERRLSAHTLRGYAHELEEL--------KQLAKGRPLESLTPVDIRGAVSRAHA 61 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS+ LS ++F ++L R + + +R K++ LP+AL+ A L+++ Sbjct: 62 GGLTARSISHRLSAWRAFYRWLAGRVDLAANPVATVRAPKQAKPLPKALSVDDATRLMES 121 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD------------DQSTL 188 + R+ A+L L Y GLR++E + L + D D + + Sbjct: 122 PPAASPEGL-----RDHAMLELFYSSGLRLAELVGLDAR-FADADGYRSAGWLKLDSAEV 175 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL------PLFRGIRGKPLNPGV 242 + GKG++ R+VP+ +A+ + L + Q+ PLF RG L+P V Sbjct: 176 EVLGKGNRRRVVPVGSKALEALGAW-------LAVRDQMVKHDPHPLFLSARGNRLSPNV 228 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + +++ G+P + H LRHSFATH+L + GDLR++Q +LGH ++ TQ+YT ++ Sbjct: 229 VRERVKRAALVAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTALD 288 Query: 303 SKNGGDWMMEIYDQTHPSITQKD 325 ++ + +YDQ HP ++D Sbjct: 289 FQH----LAHVYDQAHPRAKKRD 307 >gi|289523043|ref|ZP_06439897.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503586|gb|EFD24750.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 299 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 97/300 (32%), Positives = 155/300 (51%), Gaps = 26/300 (8%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +ERG S+ T+++Y D +++ F + + I + + + F+ ++ Sbjct: 19 LRLERGYSENTIEAYMTDIAKWIKFCSNQNLDPIPPR------HEYMSRFLKAMASEGKS 72 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL----KKSNSLPRALNEKQALTLVDN 140 SL+R + I+S+ +YL T E + + L K LPR L+E + L+ Sbjct: 73 KASLQRYAAAIRSWNRYL-----TIEGWVDGEQWLPSLPSKEQKLPRILSEGEIERLIS- 126 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + + + R+ A+ L YGCGLR SE SL ++I TLR+ GKGDK R+V Sbjct: 127 ----SCRDGSVLGGRDEALFELAYGCGLRASEVCSLALEDIDWRAGTLRVIGKGDKERVV 182 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LS 259 PLL SV++ + Y D LN + LF G+ L+ R IR+ + G+P + Sbjct: 183 PLLGSVKEKLRHYVDAIRPLLNRREERWLFLTRTGRKLHREDLWRIIRRRGKAAGIPSVR 242 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHS ATH+L G DLR++Q +LGH +STT+ YT+++ + + +IYD+ HP Sbjct: 243 LHPHVLRHSLATHMLRRGLDLRTLQELLGHASISTTERYTHLDLE-----LRDIYDKCHP 297 >gi|220929173|ref|YP_002506082.1| tyrosine recombinase XerD [Clostridium cellulolyticum H10] gi|219999501|gb|ACL76102.1| tyrosine recombinase XerD [Clostridium cellulolyticum H10] Length = 294 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 95/305 (31%), Positives = 161/305 (52%), Gaps = 22/305 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + ++ LE ++ LS TLQSY+ D Q++ +L ++I + I + T + A++ Sbjct: 6 EKFINFLERDKRLSLNTLQSYKRDIEQYITYL-----KEINVTNIVNTNKTTVIAYLLHL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + ++ R+L+ I+SF ++L K K+ + + K LP+ L+ ++ L+ Sbjct: 61 QKKGRATSTISRNLASIRSFYQFLYKDKVIDNDPTSELESPKVEKKLPQILSTQEVELLL 120 Query: 139 DNVLLHTSHETKWID---ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 D + K +D R+ A+L LLY G+R+SE +SL +I D ++ KG Sbjct: 121 D--------QPKCLDLKGIRDKAMLELLYATGIRVSELISLNLDDINFDLGLIKC-NKGT 171 Query: 196 KIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 + R +P+ A+ EY + F + + ++ LF + GK L F + I+ + Sbjct: 172 RERTIPIGSISTAAVHEYLEKSRNFLIQDSQEIALFVNVNGKRLTRQGFWKIIKHYKNQA 231 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 + T HTLRHSFA HLL NG DLRSIQ +LGH +S+TQIY + +KN + ++Y Sbjct: 232 KINKDITPHTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQIYAQI-AKNK---IKDVY 287 Query: 315 DQTHP 319 +THP Sbjct: 288 KKTHP 292 >gi|297748991|gb|ADI51537.1| Integrase/recombinase (XerC/CodV family) [Chlamydia trachomatis D-EC] gi|297749871|gb|ADI52549.1| Integrase/recombinase (XerC/CodV family) [Chlamydia trachomatis D-LC] Length = 308 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 97/299 (32%), Positives = 159/299 (53%), Gaps = 24/299 (8%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L ++RG+S L++Q+Y D FL ++ +I+ +++ + F+ K K Sbjct: 27 LSVDRGISPLSVQAYCQDVLLFL--------QRASIEATDRINQESVFLFVEKCHKAKES 78 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 + +L R L +K F +LK K+ + + + K LP L+ ++ +L+D L Sbjct: 79 ETTLARRLIALKVFFHFLKDAKMLDQQPFIEHPKIWKR--LPSILSTEEVNSLLDQPLNI 136 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + +T I +R++AILY Y G+R+SE L +I DD +R+ GKG K R+VP+ Sbjct: 137 PNLDTH-IASRDAAILYTFYATGIRVSELCDLCIGDISDD--FIRVTGKGRKTRLVPISI 193 Query: 205 SVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 ++AI Y L F L + P +F IRGK L+ + I + + Sbjct: 194 KAKQAIDAY--LSSFRDELQKKNPSEEHVFLSIRGKKLDRSCVWKRITFYAKLVTTK-RI 250 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H+LRH+FATHLL+N DLR IQ +LGH R+S+T+IYT+V S++ ++E + HP Sbjct: 251 SPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVASES----LIEKFHTYHP 305 >gi|262373155|ref|ZP_06066434.1| tyrosine recombinase XerC [Acinetobacter junii SH205] gi|262313180|gb|EEY94265.1| tyrosine recombinase XerC [Acinetobacter junii SH205] Length = 311 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 98/315 (31%), Positives = 165/315 (52%), Gaps = 31/315 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIF-----LAFYTEEKITIQTIRQLSYTEIRAFI 75 WL+ I + S+ T+++Y+ D F F LA Y E +++R ++ Sbjct: 18 WLKE-RIIQNQSEHTIEAYQRDLTDFFNFCDSKSLALYDIEA-----------SDLREYL 65 Query: 76 SKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 + R ++ SL+R L+ I+ F+K+ ++ + ++ + + ++ LP ++ + Sbjct: 66 ANRVEKDQLSSSSLQRHLTSIRQFMKWAEQGQYLQQNPSEDFKLKRQPRPLPGMVDIETV 125 Query: 135 LTLVDNVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 ++D E + W+ R+ AIL LLY GLR++E L ++I ++ LRI GK Sbjct: 126 HQILDQAPPDKPIEQQLWL--RDKAILELLYSSGLRLAELQGLMIKDIDFNRQLLRITGK 183 Query: 194 GDKIRIVPLLPSVRKAILEY---YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 G+K RIVP + +++E+ Y + + NL+ +F RG L P + ++ Sbjct: 184 GNKTRIVPFGQKAKDSLIEWLKIYRIWQGEFNLDS--AVFISQRGNRLTPRQIENRVKLQ 241 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 + G+ + H LRH FA+H+LS GDLRS+Q +LGH LSTTQIYT+V+ D + Sbjct: 242 AQRAGVNVDLHPHLLRHCFASHMLSASGDLRSVQEMLGHSNLSTTQIYTHVDF----DQL 297 Query: 311 MEIYDQTHPSITQKD 325 +YDQTHP QKD Sbjct: 298 ARVYDQTHPR-AQKD 311 >gi|330985052|gb|EGH83155.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. lachrymans str. M301315] Length = 298 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 100/308 (32%), Positives = 151/308 (49%), Gaps = 32/308 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKRR 79 +L L +E+GLS T SY D +F + E + + + R++ I ++ R Sbjct: 12 FLDALWLEKGLSDNTRDSYRSD---LALFNGWLQERNVDLPSAGREV----ILDHLAWRV 64 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 RS R LSG + F +YL + K+ + L + + LP++L+E Sbjct: 65 ENAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADV----- 119 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 LL ++ I R+ A+L +LY CGLR++E +SLT + + Q LR+ GKG K R+ Sbjct: 120 EALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERL 179 Query: 200 VPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 VP+ +R A E P D+ LF RG + F I+ Sbjct: 180 VPMGEEAIVWVERYLRGARDELLGGKPSDV-------LFPSTRGDQMTRQTFWHRIKHQA 232 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 G+ S + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + Sbjct: 233 TVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----LQ 288 Query: 312 EIYDQTHP 319 E++ + HP Sbjct: 289 ELHAKHHP 296 >gi|330686041|gb|EGG97664.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU121] Length = 295 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 93/305 (30%), Positives = 160/305 (52%), Gaps = 21/305 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE---IRAFI 75 + +L+ ++IE+GLS T+ +Y D ++ +E +T+Q I + + + I+ + Sbjct: 6 EEYLKFIQIEKGLSVNTIGAYRRDLNKY--------KEYLTLQKISNIDFVDRQTIQECL 57 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 Q +S+ R +S I+SF ++ + K + + + K LP L + + Sbjct: 58 GYLIDQGQSSKSIARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEVDEVI 117 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L++ L+ ++ R+ +L LLY G+R+SE + + +++ +R+ GKGD Sbjct: 118 ELLNAPDLNKNN-----GYRDRTMLELLYATGMRVSEVIQIEVEDVNLMMGFVRVFGKGD 172 Query: 196 KIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 K RIVPL +V + Y + P L + LF + GKPL+ + I+Q Sbjct: 173 KERIVPLGDTVIDYLTTYIETVRPQLLKQTVTNVLFLNMHGKPLSRQGIWKMIKQNGLKA 232 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 + + T HTLRHSFATHLL NG DLR++Q +LGH +STTQ+YT+V+ + ++Y Sbjct: 233 NINKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMY 288 Query: 315 DQTHP 319 +Q HP Sbjct: 289 NQYHP 293 >gi|295695953|ref|YP_003589191.1| tyrosine recombinase XerD [Bacillus tusciae DSM 2912] gi|295411555|gb|ADG06047.1| tyrosine recombinase XerD [Bacillus tusciae DSM 2912] Length = 295 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 95/304 (31%), Positives = 155/304 (50%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +++ L IE+GL+ TL SY D F FL ++ + I A+++ Sbjct: 6 ERFIRYLAIEKGLAPSTLGSYRSDLEDFSDFL-----QRTGCGDWPETGRRHIVAYLA-- 58 Query: 79 RTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 QK+G ++ R ++ ++SF ++L + + + + K LPR LN ++ Sbjct: 59 HLQKLGRAPATVSRHMASLRSFYQFLSREGLIEVDPTGQLDSPKADKRLPRVLNVEEV-- 116 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 LL + R+ A+L +LY G+R+SE +SL ++ + ++ GKG K Sbjct: 117 ---ERLLAAPEGLTPMALRDRAMLEMLYATGVRVSELVSLNVTDVNLNMGYVKCYGKGSK 173 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RIVPL + +A+ Y L N LF +GK L F + +++ + G Sbjct: 174 ERIVPLGSAALEAVHAYLTRGRAGLLKNGDPGALFVNHQGKRLTRQGFWKILKKYAQTAG 233 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V + ++Y+ Sbjct: 234 IQKAITPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTQTR----LKDVYE 289 Query: 316 QTHP 319 +THP Sbjct: 290 RTHP 293 >gi|152976197|ref|YP_001375714.1| site-specific tyrosine recombinase XerC [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024949|gb|ABS22719.1| tyrosine recombinase XerC [Bacillus cytotoxicus NVH 391-98] Length = 299 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 93/311 (29%), Positives = 159/311 (51%), Gaps = 31/311 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q ++ L+IER SK T+ SY+ D F+ F+ E+ I + ++Y ++R +++ Sbjct: 8 QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYVDVRLYLTTL 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137 +K+ +S+ R +S ++S ++L R+ E N + +L KK S+P+ L ++ Sbjct: 63 HDEKLARKSVARKVSSLRSLYRFLM-REGYREDNPFALASLPKKEWSIPKFLYAEEL--- 118 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 L S + RN A+L L+Y G+R+SE ++L +I T+ + GKG K Sbjct: 119 --EKLFEVSDTKTPLGQRNQALLELMYATGIRVSECVTLKLTDIDFSVGTILVMGKGKKQ 176 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248 R +P + A++ Y + N QL +F +G PL + + Sbjct: 177 RYIPFGSYAQDALITYIE------NGRKQLAKKTEEYSQMVFLNAKGVPLTDRGVRYILN 230 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 +L + L + + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ + Sbjct: 231 ELIKKTSLTMRISPHMLRHTFATHMLDEGSDLRAVQELLGHENLSTTQIYTHVSKER--- 287 Query: 309 WMMEIYDQTHP 319 + +Y + HP Sbjct: 288 -LRSVYMKHHP 297 >gi|242373798|ref|ZP_04819372.1| tyrosine recombinase XerD [Staphylococcus epidermidis M23864:W1] gi|242348535|gb|EES40137.1| tyrosine recombinase XerD [Staphylococcus epidermidis M23864:W1] Length = 295 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 102/304 (33%), Positives = 160/304 (52%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTI-RQLSYTEIRAFIS 76 + +L ++IE+GLS T+ +Y D ++ +L E KIT I + RQ+ + I Sbjct: 6 EEYLNFIQIEKGLSSNTIGAYRRDLNKYKTYLE---ERKITHIDFVDRQVIQECLGHLID 62 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 ++ K SL R +S I+SF ++ + K + + + K LP L ++ L Sbjct: 63 LGQSSK----SLARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEVQEVLD 118 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L L T TK R+ +L LLY G+R+SE + L +++ +R+ GKG+K Sbjct: 119 L-----LETPDLTKNNGYRDRTMLELLYATGMRVSEIIQLEVEDVNLMMGFVRVFGKGNK 173 Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RIVPL +V + + Y + P L + LF + GKPL+ + I+Q Sbjct: 174 ERIVPLGDAVIEYLTTYIETVRPQLLKQTVTHVLFLNMHGKPLSRQGIWKMIKQNGIKAN 233 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + T HTLRHSFATHLL NG DLR++Q +LGH +STTQ+YT+V+ + ++Y+ Sbjct: 234 INKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYN 289 Query: 316 QTHP 319 Q HP Sbjct: 290 QFHP 293 >gi|183221728|ref|YP_001839724.1| tyrosine recombinase xerD [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911803|ref|YP_001963358.1| site-specific recombinase XerD [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776479|gb|ABZ94780.1| Site-specific recombinase XerD [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780150|gb|ABZ98448.1| Tyrosine recombinase xerD [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 302 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 102/328 (31%), Positives = 161/328 (49%), Gaps = 40/328 (12%) Query: 3 GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62 G+ LP + +LL+ Q +L +E+GLS ++ SY D +F IFL EK I Sbjct: 2 GSKLP-VSQNQLLQTFQEYLS---VEKGLSDNSIYSYGYDLNKFAIFL-----EKEHINF 52 Query: 63 IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122 + ++ +I F+ + R +KI ++L R + I+ F KYL+ K + + + + Sbjct: 53 L-EVKANDIMRFLEEERERKISAKTLAREVVAIRQFYKYLRDEKRLDSNPTEKIETPEVA 111 Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 ++P L + + L N+ E + R+ I LLY GLRISEA +L +I Sbjct: 112 RTIPDYLTQAEIEELFRNI-----KEDNLYELRDKCIFELLYSSGLRISEACNLKMTDID 166 Query: 183 DDQSTLRIQGKGDKIRIVPL-----------LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231 + T+ ++GKG + R+VP L R IL+ C F +F Sbjct: 167 MENMTITVEGKGGRQRLVPFGEKSLEILKRYLVESRTEILKK-RTCDF---------VFV 216 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291 +G +N R + + + T HTLRHSFATHLL N DL+S+Q +LGH Sbjct: 217 SKKGSYINRKSVWRLLNHYIKRTKIKKKVTPHTLRHSFATHLLENHADLKSVQELLGHID 276 Query: 292 LSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 +STTQIYT++ +K + E++ + HP Sbjct: 277 ISTTQIYTHMANKT----LKEVHKKFHP 300 >gi|298571314|gb|ADI87658.1| tyrosine recombinase XerC [uncultured Nitrospirae bacterium MY2-1F] gi|298571415|gb|ADI87756.1| tyrosine recombinase XerC [uncultured Nitrospirae bacterium MY3-11A] Length = 288 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 93/303 (30%), Positives = 154/303 (50%), Gaps = 27/303 (8%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 +E+E+ S TL++Y+ D +F AF ++ ++ +IR F++ + Q + Sbjct: 1 MEVEKNASPHTLRAYKKDLEEFA---AFVKKDPASVDLY------DIRGFVAAQSKQGLA 51 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S+ R LS +K+F YL T + + + K LP L++ T+++ Sbjct: 52 KSSVMRRLSTVKAFFNYLASIGAVTANPTRLVPSPKVPKHLPNFLSKDDTFTMMEK---- 107 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + + ARN AIL L Y GLR+SE ++I Q+ ++++GKG K RIVP+ Sbjct: 108 -AEGIGFTAARNKAILELFYSSGLRVSELAGADMESINLKQAMVKVRGKGKKERIVPI-G 165 Query: 205 SVRKAILEYYDLCPFDLNLNIQLP--------LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 S L+ Y + + + P LF G+ L +R + + R G+ Sbjct: 166 SYALGALKTYLVERLLIKEDTTRPRISTDPAALFINSSGERLTDRHIRRIVVKFARLTGV 225 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + HTLRH+FATHLL +G DLR IQ +LGH LSTTQ YT+++ ++ +M++Y++ Sbjct: 226 EGAVGPHTLRHTFATHLLQSGADLRVIQELLGHASLSTTQKYTHLDIQH----LMDVYEK 281 Query: 317 THP 319 HP Sbjct: 282 CHP 284 >gi|322435169|ref|YP_004217381.1| integrase family protein [Acidobacterium sp. MP5ACTX9] gi|321162896|gb|ADW68601.1| integrase family protein [Acidobacterium sp. MP5ACTX9] Length = 310 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 93/317 (29%), Positives = 158/317 (49%), Gaps = 22/317 (6%) Query: 12 FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71 +E+L + +L L ERG S+ T+++Y + + F +LA E+ I + + I Sbjct: 4 YEVLAD--GFLAMLRNERGASEHTVRAYTREVKDFAAYLAGEMGER----GIGAVEHLHI 57 Query: 72 RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131 R ++S + + S+ R+L+ ++S+ K+L K ++ L + K++ LPR + Sbjct: 58 RGYLSVLYARGLEKSSMARALASVRSWFKWLAKEGKVEQNPALLVSTPKRAQHLPRVPSA 117 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 ++ ++D+ L ++ W + R+ I LLYGCG+R SE L N+ + ++ Sbjct: 118 EEVNRVMDS--LESADGGTWPE-RDRVIFELLYGCGIRNSELCGLDMGNVQWANDAVLVR 174 Query: 192 GKGDKIRIVPLLPSVRKAILEYY--------DLCPFDLNLNIQLPLFRGIRGKP-LNPGV 242 GKG K R+VPL A+ Y L + L + +RG L Sbjct: 175 GKGKKERLVPLGDEAAAAVRAYMPQRAERLAAAGKGGLIGDGALLMNARMRGTCRLTTRS 234 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 R ++ + + GL HTLRH+F TH+L +G DLR+IQ +LGH RLSTTQ YT + Sbjct: 235 VGRIVKAIAQSRGLAADVHPHTLRHAFGTHMLEDGADLRAIQEMLGHERLSTTQRYTQLT 294 Query: 303 SKNGGDWMMEIYDQTHP 319 + +Y+++HP Sbjct: 295 VGQ----VQRVYEESHP 307 >gi|289625892|ref|ZP_06458846.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646210|ref|ZP_06477553.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. aesculi str. 2250] gi|298488278|ref|ZP_07006311.1| Site-specific recombinase XerD [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157217|gb|EFH98304.1| Site-specific recombinase XerD [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330867528|gb|EGH02237.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 298 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 100/308 (32%), Positives = 151/308 (49%), Gaps = 32/308 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKRR 79 +L L +E+GLS T SY D +F + E + + + R++ I ++ R Sbjct: 12 FLDALWLEKGLSDNTRDSYRSD---LALFNGWLQERNVDLPSAGREV----ILDHLAWRV 64 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 RS R LSG + F +YL + K+ + L + + LP++L+E Sbjct: 65 ENAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADV----- 119 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 LL ++ I R+ A+L +LY CGLR++E +SLT + + Q LR+ GKG K R+ Sbjct: 120 EALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERL 179 Query: 200 VPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 VP+ +R A E P D+ LF RG + F I+ Sbjct: 180 VPMGEEAIVWVERYLRGARDELLGGKPSDV-------LFPSTRGDQMTRQTFWHRIKHQA 232 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 G+ S + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + Sbjct: 233 TVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----LQ 288 Query: 312 EIYDQTHP 319 E++ + HP Sbjct: 289 EMHAKHHP 296 >gi|212715594|ref|ZP_03323722.1| hypothetical protein BIFCAT_00493 [Bifidobacterium catenulatum DSM 16992] gi|212660961|gb|EEB21536.1| hypothetical protein BIFCAT_00493 [Bifidobacterium catenulatum DSM 16992] Length = 308 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 83/287 (28%), Positives = 153/287 (53%), Gaps = 16/287 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L+ RGLS+ T ++Y D + L+ L E++ + + +++ ++R ++++ ++K Sbjct: 14 LKANRGLSENTRKAYRGDVEECLLAL-----ERLGCRNLNEVTIEDLRMWMAES-SKKHA 67 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S+ R ++ F + + +TT + K ++LP L+E QA L++ V Sbjct: 68 KSSMARKTVAVRGFFAWTHEHGVTTTDPACVLMTPKIPDTLPDVLSESQAEQLMERVDED 127 Query: 145 T--------SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 + + + + I+ R++A+L LLY G+R++E + L +++ T+++ GKG+K Sbjct: 128 SETSQPKERTMKQQAIELRDAAMLELLYATGMRVAELVGLDVPDVVFSNRTVKVTGKGNK 187 Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 R++P +KAI + D P + LF G +GK ++ + +R + R G Sbjct: 188 QRVMPFGAPAQKAIRRWLDDGRPLLVGEQSAAALFLGRQGKRIDQRMVRRVVHACARDAG 247 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 +P + H LRHS ATH+L G DLR +Q +LGH L TTQ YT+V+ Sbjct: 248 VP-DISPHALRHSAATHMLDGGADLREVQELLGHSSLKTTQRYTHVS 293 >gi|330975463|gb|EGH75529.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 298 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 101/308 (32%), Positives = 150/308 (48%), Gaps = 32/308 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISKRR 79 +L L +E+GLS T SY D +F + E + I R++ I ++ R Sbjct: 12 FLDALWLEKGLSDNTRDSYRSD---LALFNGWLQERNVDLISAGREV----ILDHLAWRV 64 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 RS R LSG + F +YL + K+ + L + + LP++L+E Sbjct: 65 ENAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADV----- 119 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 LL ++ I R+ A+L +LY CGLR++E +SLT + + Q LR+ GKG K R+ Sbjct: 120 EALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERL 179 Query: 200 VPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 VP+ +R A E P D+ LF RG + F I+ Sbjct: 180 VPMGEESIVWVERYLRGARDELLGGKPSDV-------LFPSTRGDQMTRQTFWHRIKHQA 232 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 G+ S + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + Sbjct: 233 TVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----LQ 288 Query: 312 EIYDQTHP 319 E++ + HP Sbjct: 289 ELHAKHHP 296 >gi|303232676|ref|ZP_07319361.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae PB189-T1-4] gi|302481162|gb|EFL44237.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae PB189-T1-4] Length = 346 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 105/343 (30%), Positives = 162/343 (47%), Gaps = 48/343 (13%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 L+K +Q ++ +L R LS TL++Y D ++ ++ + ++I T RQL R Sbjct: 21 LMKLKQEFMSHLSSTRNLSHNTLRAYSIDLDAYIAWVLARQYDALSI-THRQL-----RE 74 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 +++ ++ R++ R LS I+S+ K+ + TT + + K +LPR LN Sbjct: 75 YLASLSSRGYATRTINRHLSAIRSWYKWFVWQGYTTSDAPAALASPKNPKTLPRVLNHHD 134 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 TL N ++ E R+ + +LY G RISEA LT +I ++ +R+ GK Sbjct: 135 ITTLF-NAFDESTPE----GVRDRCFVEVLYATGCRISEAAQLTLGDIDMHEAQIRLFGK 189 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL-------------NLNIQLP------------ 228 G K+RIVP+ + EY L + +P Sbjct: 190 GSKMRIVPVYKECLDELSEYITKARPRLLAARTATSRRRAAGKSAAVPTRGTAATGASNR 249 Query: 229 LFRGIRGKPLNPG----VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284 LF RG P++ VF YI + LP + + H++RH+FAT LLS G DLRS+Q Sbjct: 250 LFISTRGNPMSATALRYVFDSYIEK----ANLPATLSPHSMRHTFATDLLSGGADLRSVQ 305 Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327 +LGH LSTTQIYT+V+ D M Q HP + K+ Sbjct: 306 ELLGHSSLSTTQIYTHVSI----DAMKRAVKQAHPRAEAETKR 344 >gi|165976973|ref|YP_001652566.1| site-specific tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303250986|ref|ZP_07337174.1| site-specific tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253199|ref|ZP_07535075.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|165877074|gb|ABY70122.1| integrase/recombinase XerD [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302650143|gb|EFL80311.1| site-specific tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859343|gb|EFM91380.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 297 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 95/303 (31%), Positives = 154/303 (50%), Gaps = 18/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L E GLS+ T +Y D F +E T + L + +++AF+ +R Sbjct: 9 EQFLDTLWQEHGLSENTSVAYRLDLESF-------SEWLPTPKAFLTLDHFDLQAFLGER 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ F ++L + L + + +K LP++L+E+Q + L+ Sbjct: 62 LELGYKATSSARMLSCLRKFFRFLYTENYRQDDPTLTLTSPRKPAHLPKSLSEEQVMDLL 121 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + + ++ R+ A+L LLY GLR+SE +SL+ N+ Q +R+ GKGDK R Sbjct: 122 D-----SPNTLDPVELRDKAMLELLYATGLRVSELVSLSIDNLSLRQGVVRVVGKGDKER 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ I E++ L N+Q + F RG+ + F I+ G+ Sbjct: 177 LVPIGEEAGYWIQEFFRYGRAILLNNLQSDVVFPSRRGQQMTRQTFWHRIKHYAVLAGID 236 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHL+++G DLR +Q +LGH LSTTQIYT+V + ++ Q Sbjct: 237 SEKLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKAR----LKSLHQQ 292 Query: 317 THP 319 HP Sbjct: 293 FHP 295 >gi|294340803|emb|CAZ89198.1| putative XerD or XerC integrase [Thiomonas sp. 3As] Length = 340 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 96/328 (29%), Positives = 159/328 (48%), Gaps = 35/328 (10%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L + + ER L++ TL +Y D L E + I L IR + ++ Sbjct: 24 DYLAHAQTERRLAEGTLVNYRRDLDDLL-----QRAEALGAAPIESL---HIRRWAAQLH 75 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV- 138 + R++ LS +SF +++ + + + ++R K + LP+AL+ QA+ L Sbjct: 76 AGGMSPRAIAARLSAWRSFFRWMGRLGFVAANPVQDVRAPKAAKPLPKALSVDQAVALAA 135 Query: 139 -----------DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL------TPQNI 181 + H + AR AI LLY CGLR+SE L T + Sbjct: 136 YTPQESTPASHPHRRPHQAEPFATRGARVHAIAELLYSCGLRVSELTGLDVRASKTARGW 195 Query: 182 MD-DQSTLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 +D D + + GKG+K R VP+ L ++R+ + + L D + + Q+ LF G RG Sbjct: 196 IDWDAAEATVTGKGNKRRSVPIGRPALLALRQWLEQRPALLRCDADADAQVALFLGARGA 255 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 L P +R+ R GL H LRHSFA+H+L + GDLR++Q +LGH ++TTQ Sbjct: 256 RLTPQRVWLELREHARAAGLDARVHPHMLRHSFASHVLQSSGDLRAVQELLGHSSIATTQ 315 Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSITQK 324 +YT ++ ++ + ++YD HP +K Sbjct: 316 VYTRLDFQH----LAKVYDAAHPRARKK 339 >gi|118594353|ref|ZP_01551700.1| Tyrosine recombinase XerD [Methylophilales bacterium HTCC2181] gi|118440131|gb|EAV46758.1| Tyrosine recombinase XerD [Methylophilales bacterium HTCC2181] Length = 295 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 95/305 (31%), Positives = 159/305 (52%), Gaps = 24/305 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK-ITIQTIRQLSYTEIRAFISKR 78 +++ +L +E GLSK TL SY D +IF ++ E+K I + + +L E AF Sbjct: 8 DFIDHLWLEDGLSKNTLNSYRFD---LIIFDSWLGEQKKIAMMDVSELEIQEFLAF---- 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + RS+ R L+ ++ F +Y + K + L ++ K SLP++L+E++ +L+ Sbjct: 61 KFPSSKSRSISRLLATLRRFFRYQLREKKIQKDPTLKIQTPKIPKSLPKSLSEEEVESLL 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D L +S R+ ++L LLY CGLR++E + + ++ +R+ GKG K R Sbjct: 121 DAPNLDSSS-----GLRDRSMLELLYACGLRVTELVDIQLTEVILSDGVIRVTGKGSKTR 175 Query: 199 IVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 +VP+ + ++K I E D L LF RG + F I++ Sbjct: 176 LVPMGEEAVDWIKKYIAEARDDI---LRKKTSKFLFVTNRGGAMTRQAFWYVIKKYAVIA 232 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 + + H LRH+FATHL+++G DLR +Q +LGH +STTQIYT+V + + +I+ Sbjct: 233 NINKPMSPHILRHAFATHLINHGADLRVVQMLLGHTDISTTQIYTHVARER----LKKIH 288 Query: 315 DQTHP 319 + HP Sbjct: 289 QEHHP 293 >gi|166154210|ref|YP_001654328.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis 434/Bu] gi|166155085|ref|YP_001653340.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335456|ref|ZP_07223700.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis L2tet1] gi|165930198|emb|CAP03683.1| integrase/recombinase [Chlamydia trachomatis 434/Bu] gi|165931073|emb|CAP06637.1| integrase/recombinase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 300 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 97/299 (32%), Positives = 159/299 (53%), Gaps = 24/299 (8%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L ++RG+S L++Q+Y D FL ++ +I+ +++ + F+ K K Sbjct: 19 LSVDRGISPLSVQAYCQDVLLFL--------QRASIEATDRINQESVFLFVEKCHKAKES 70 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 + +L R L +K F +LK K+ + + + K LP L+ ++ +L+D L Sbjct: 71 ETTLARRLIALKVFFHFLKDVKMLDQQPFIEHPKIWKR--LPSILSTEEVNSLLDQPLNI 128 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + +T I +R++AILY Y G+R+SE L +I DD +R+ GKG K R+VP+ Sbjct: 129 PNLDTH-IASRDAAILYTFYATGIRVSELCDLCIGDISDD--FIRVTGKGRKTRLVPISI 185 Query: 205 SVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 ++AI Y L F L + P +F IRGK L+ + I + + Sbjct: 186 KAKQAIDAY--LSSFRDELQKKNPSEEHVFLSIRGKKLDRSCVWKRITFYAKLVTTK-RI 242 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H+LRH+FATHLL+N DLR IQ +LGH R+S+T+IYT+V S++ ++E + HP Sbjct: 243 SPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVASES----LIEKFHTYHP 297 >gi|326803729|ref|YP_004321547.1| tyrosine recombinase XerD [Aerococcus urinae ACS-120-V-Col10a] gi|326651687|gb|AEA01870.1| tyrosine recombinase XerD [Aerococcus urinae ACS-120-V-Col10a] Length = 299 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 98/305 (32%), Positives = 163/305 (53%), Gaps = 19/305 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L L +E+GLS+ T+++Y QF + L+ + I+ I+ + +I + Sbjct: 8 EDFLIALRVEQGLSENTIKTYHNVLNQFQMILS-----EAGIEDIQAVKRQDIIQQLENL 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + ++ + LS ++ F KYL + E+ + N+ KK LP+ L+ ++ V Sbjct: 63 NQKGRAVSTMSQYLSTLRHFFKYLILDSVIEENPVENISLPKKKQQLPQVLSVEE----V 118 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D LL + R+ ++L LLY GLR+SE + L + +D L+ GKG+K R Sbjct: 119 DR-LLEMPDVNSTLGLRDRSLLELLYASGLRVSELVHLKISDFHEDLGFLQTIGKGNKER 177 Query: 199 IVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYL 254 I+PL + + Y L N Q ++ G+PL+ GV+++ ++Q + Sbjct: 178 IIPLGEVAKDWLQTYLKESRLKLLGENDQSQGMIYLNHHGRPLSRQGVWKK-LKQYIQAA 236 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ + HTLRHSFATHLL NG DLR +Q +LGH +STTQIYT+++S++ M EIY Sbjct: 237 GITKEVSPHTLRHSFATHLLENGADLRVVQELLGHADISTTQIYTHIHSQH----MREIY 292 Query: 315 DQTHP 319 +T P Sbjct: 293 KKTFP 297 >gi|330894535|gb|EGH27196.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. mori str. 301020] Length = 298 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 100/308 (32%), Positives = 151/308 (49%), Gaps = 32/308 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKRR 79 +L L +E+GLS T +SY D +F + E + + + R++ I ++ R Sbjct: 12 FLDALWLEKGLSDNTRESYRSD---LALFNGWLQERNVDLPSAGREV----ILDHLAWRV 64 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 RS R LSG + F +YL + K+ T L + + LP++L+E Sbjct: 65 ENAYKPRSTARFLSGARGFYRYLLREKLITLDPTLQIDMPQLGKPLPKSLSEADV----- 119 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 LL ++ R+ A+L +LY CGLR++E +SLT + + Q LR+ GKG K R+ Sbjct: 120 EALLAAPDLSEPTGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERL 179 Query: 200 VPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 VP+ +R A E P D+ LF RG + F I+ Sbjct: 180 VPMGEEAIVWVERYLRGARDELLGGKPSDV-------LFPSTRGDQMTRQTFWHRIKHQA 232 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 G+ S + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + Sbjct: 233 TVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----LQ 288 Query: 312 EIYDQTHP 319 E++ + HP Sbjct: 289 EMHAKHHP 296 >gi|21673437|ref|NP_661502.1| integrase/recombinase XerD [Chlorobium tepidum TLS] gi|34222899|sp|Q8KET0|XERD_CHLTE RecName: Full=Tyrosine recombinase xerD gi|21646539|gb|AAM71844.1| integrase/recombinase XerD [Chlorobium tepidum TLS] Length = 304 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 95/305 (31%), Positives = 152/305 (49%), Gaps = 13/305 (4%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 K + +L L +ER S T SY D ++L +L + ++ + + +IR FI Sbjct: 10 KTLETFLNYLTLERNFSGNTRASYLNDLGRYLAWL-----HECGVKP-EEAAPGDIRKFI 63 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 + + S+ R++S I+SF K+L ++ T + N+ K + LP L ++ Sbjct: 64 QELHEIGLEASSIARNISAIRSFHKFLLTERLATMNPAENIHQPKLARYLPSVLTIEEMA 123 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 TL+D L H T R+ A+L LY G+R+SE L L+ N+ D +R+ GKG Sbjct: 124 TLLDAPL--KRHPTSTFMLRDKAMLEFLYATGVRVSELLGLSRLNLHMDDGFVRVFGKGS 181 Query: 196 KIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 K R+VP+ + + Y D L P ++ +F RG PL+ +R+ Sbjct: 182 KERLVPVGQTAISWMKRYLDELRPGMMSATSHDTIFLNSRGGPLSRMAAWNIVREHAVIA 241 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ + HT RHSFATHLL G DLR +Q +LGH + TQIYT+++ ++ E++ Sbjct: 242 GIEKPISPHTFRHSFATHLLEGGADLRVVQEMLGHSSIIATQIYTHIDR----SFIKEVH 297 Query: 315 DQTHP 319 HP Sbjct: 298 KTFHP 302 >gi|209694155|ref|YP_002262083.1| site-specific tyrosine recombinase XerD [Aliivibrio salmonicida LFI1238] gi|208008106|emb|CAQ78247.1| tyrosine recombinase XerD [Aliivibrio salmonicida LFI1238] Length = 300 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 97/303 (32%), Positives = 156/303 (51%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + +ERGLS+ TL SY D + L +L E +I + E +A++ + Sbjct: 11 ERFLDTMWMERGLSENTLSSYRNDLMKLLNWL---DENHYKCASISAMGLNEYQAYLVDK 67 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + ++ S R LS ++ F +YL + KI + + + K LP+ L+E+Q Sbjct: 68 QYKQT---SRARMLSALRRFFQYLHREKIRGDDPTALLMSPKLPQRLPKDLSEEQV---- 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 N LL + ++ R+ A+L LLY GLR++E +SLT +N+ Q +R+ GKGDK R Sbjct: 121 -NDLLEAPNVDDPLELRDRAMLELLYATGLRVTELVSLTMENLSLRQGVVRVTGKGDKER 179 Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ + I + D L +F R + + F I+ G+ Sbjct: 180 LVPMGENAVYWIQTFLDQGRSTLLGEKSSDVVFPSRRARQMTRQTFWHRIKHYAVIAGID 239 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL+ G DLR +Q +LGH LSTTQIYT+V ++ + +I+ + Sbjct: 240 TDKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIHQE 295 Query: 317 THP 319 HP Sbjct: 296 HHP 298 >gi|327402648|ref|YP_004343486.1| tyrosine recombinase XerD subunit [Fluviicola taffensis DSM 16823] gi|327318156|gb|AEA42648.1| tyrosine recombinase XerD subunit [Fluviicola taffensis DSM 16823] Length = 301 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 90/288 (31%), Positives = 154/288 (53%), Gaps = 13/288 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + ++ L+IER L++ ++ +Y+ D + F YT IQT ++ F+++ Sbjct: 9 KQFVHYLKIERSLAENSIFAYQQDIAKLRDFCESYTLSPEHIQT------GHLKQFVAEL 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + RS R +SG K F +L +I + + K LP L ++ L+ Sbjct: 63 YDMGLSARSQARIISGWKQFFDFLVLEEIRKDDPSEALELPKIGRKLPEVLTIEEIDALI 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + L +S+E + RN AIL LY CG+R+SE +SL ++ ++ +R+ GKG+K R Sbjct: 123 DAIDL-SSNEGQ----RNKAILETLYSCGIRVSELVSLRFEDCFFEEGFIRVIGKGNKER 177 Query: 199 IVPLLPSVRKAILEY--YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VP+ PSV + + EY +D + + +F RG L + I++L G+ Sbjct: 178 LVPVSPSVIEEVGEYVEHDRSNLLIKKGHEQFVFLNRRGAQLTRVMIFTIIKRLADLAGI 237 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + + HT RHSFATHL+ G +LR+IQ +LGH ++TT+IYT+++ + Sbjct: 238 KKNISPHTFRHSFATHLIEGGANLRAIQDMLGHESITTTEIYTHLDQR 285 >gi|33594905|ref|NP_882548.1| site-specific tyrosine recombinase XerC [Bordetella parapertussis 12822] gi|33564981|emb|CAE39928.1| putative integrase/recombinase [Bordetella parapertussis] Length = 326 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 94/323 (29%), Positives = 155/323 (47%), Gaps = 27/323 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +WL++L+ R S TL Y D RQ + +++ IR F+++ Sbjct: 16 DWLRHLQAHRRYSAHTLDGYTRDLRQLA------QLAAAAGLPLERVANGHIRHFVARLH 69 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q +G RSL R+L+ + F ++ + +R K LP+AL+ +Q L+D Sbjct: 70 AQGLGPRSLARALAAWRGFYQWWAPAAGLPGNPATGVRAPKAPRGLPKALSVEQTQVLLD 129 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL------TPQN-----IMDDQSTL 188 + + E + R+ A+ LLY GLR++E +SL TP+ + D + + Sbjct: 130 HAPARLATEPAAL--RDHAMFELLYSSGLRLAELVSLDLRYERTPEYESRSWLNRDDAEV 187 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL----FRGIRGKPLNPGVFQ 244 + GKG K R VP+ S A+ ++ P F G RG+ + P V Q Sbjct: 188 IVVGKGGKRRSVPVGQSALAALDKWLQARPQLAAAGAGAQDAAALFVGTRGRRIAPRVVQ 247 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + +L + GLP H LRH+FA+H+L + DLR++Q +LGH +STTQ+YT ++ + Sbjct: 248 LQLARLAQAAGLPAHVHPHVLRHNFASHVLQSAQDLRAVQEMLGHANISTTQVYTRLDFQ 307 Query: 305 NGGDWMMEIYDQTHPSITQKDKK 327 + + YDQ HP +K + Sbjct: 308 H----LARAYDQAHPRADRKTSR 326 >gi|304311873|ref|YP_003811471.1| Phage integrase/ Tyrosine recombinase XerD [gamma proteobacterium HdN1] gi|301797606|emb|CBL45827.1| Phage integrase/ Tyrosine recombinase XerD [gamma proteobacterium HdN1] Length = 316 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 94/303 (31%), Positives = 152/303 (50%), Gaps = 22/303 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL + +E+GLS TL++Y D Q+ + +E+ + ++ Q+ ++ ++ R Sbjct: 30 WLDAVWLEKGLSSRTLEAYRQDLEQWCRWC---SEQAVLLE---QVDADTVQRYLQARAQ 83 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 RSL R LS ++ F Y + T+ + K LPR+++E + Sbjct: 84 HGTHSRSLARMLSCLRGFFAYQVRAGALTQDPTALVEAPKSGRPLPRSISEADV-----S 138 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LL + ++ R+ A+L +LY GLR+SE + L I Q +R+ GKG K R+V Sbjct: 139 ALLAAPNLEDPLELRDRAMLEVLYATGLRVSELIGLRLAQINRRQGVVRVMGKGSKERLV 198 Query: 201 PL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 PL L + + L+ L + +I P G RG + F I+ + GL Sbjct: 199 PLGEEALFWLERYFLQARALLLSSSDDDIVFP---GRRGTEMTRQAFWYRIKYHAQQAGL 255 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + + HTLRH+FATHL+++G DLR +Q +LGH LSTTQIYT+V + +++ Q Sbjct: 256 RVHLSPHTLRHAFATHLINHGADLRVVQMLLGHSDLSTTQIYTHVARLR----LKQLHAQ 311 Query: 317 THP 319 HP Sbjct: 312 HHP 314 >gi|294669162|ref|ZP_06734243.1| tyrosine recombinase XerC [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308906|gb|EFE50149.1| tyrosine recombinase XerC [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 303 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 94/300 (31%), Positives = 148/300 (49%), Gaps = 22/300 (7%) Query: 26 EIER-GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 E++R G S+ TL +Y D Q L + + + + A + K Q Sbjct: 21 ELQRQGKSEHTLTAYRRDLTQLFNLLPAHGQS---------VGRNDFVAVLKKLSQQNQS 71 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 +RSL R LS + + +L ++K+ + ++ K LP+A++ + L+D H Sbjct: 72 ERSLARKLSAWRQYCAFLMRQKLLDADPTVRLKAPKAPERLPKAVDAEPLNRLLD----H 127 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 E +D R+ AI LLYG GLR++E L +I+ D+ + ++GKG K R VPL Sbjct: 128 APAENG-LDVRDLAIFELLYGSGLRVAEVHGLNTDDILLDEGWVEVRGKGGKHRQVPLGS 186 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 A+ Y P + + + LF G GK L Q +R G P + H Sbjct: 187 RSVSALRAY---LPQRIAQSGETALFTGHTGKRLGIRQIQNRLRDWAVKNGSPQHLSPHM 243 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 +RHS+A+HLL + GD+R+IQ +LGH LS TQIYT ++ D + ++YD+ HP +K Sbjct: 244 MRHSYASHLLQSSGDIRAIQELLGHSNLSATQIYTKLDF----DRLAQVYDRAHPRAKRK 299 >gi|289675164|ref|ZP_06496054.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. syringae FF5] Length = 298 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 101/308 (32%), Positives = 150/308 (48%), Gaps = 32/308 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISKRR 79 +L L +E+GLS T SY D +F + E + I R++ I ++ R Sbjct: 12 FLDALWLEKGLSDNTRDSYRSD---LALFNGWLQERNVDLISAGREV----ILDHLAWRV 64 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 RS R LSG + F +YL + K+ + L + + LP++L+E Sbjct: 65 ENAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADV----- 119 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 LL ++ I R+ A+L +LY CGLR++E +SLT + + Q LR+ GKG K R+ Sbjct: 120 EALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERL 179 Query: 200 VPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 VP+ +R A E P D+ LF RG + F I+ Sbjct: 180 VPMGEESIVWVERYLRGARDELLGGKPSDV-------LFPSTRGDQMTRQTFWHRIKHQA 232 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 G+ S + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + Sbjct: 233 TVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----LQ 288 Query: 312 EIYDQTHP 319 E++ + HP Sbjct: 289 ELHARHHP 296 >gi|330872807|gb|EGH06956.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 298 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 100/308 (32%), Positives = 150/308 (48%), Gaps = 32/308 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKRR 79 +L L +E+GLS T SY D +F + E + + + R++ I ++ R Sbjct: 12 FLDALWLEKGLSDNTRDSYRSD---LALFNGWLQERNVDLPSAGREV----ILDHLAWRV 64 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 RS R LSG + F +YL + K+ L + + LP++L+E Sbjct: 65 DNAYKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLPKSLSEADV----- 119 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 LL ++ I R+ A+L +LY CGLR++E +SLT + + Q LR+ GKG K R+ Sbjct: 120 EALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERL 179 Query: 200 VPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 VP+ +R A E P D+ LF RG + F I+ Sbjct: 180 VPMGEEAIVWVERYMRGARDELLGGKPSDV-------LFPSTRGDQMTRQTFWHRIKHQA 232 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 G+ S + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + Sbjct: 233 TVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----LQ 288 Query: 312 EIYDQTHP 319 E++ + HP Sbjct: 289 EMHAKHHP 296 >gi|78189718|ref|YP_380056.1| phage/XerD family site-specific recombinase [Chlorobium chlorochromatii CaD3] gi|78171917|gb|ABB29013.1| site-specific recombinase, phage/XerD family [Chlorobium chlorochromatii CaD3] Length = 338 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 97/322 (30%), Positives = 167/322 (51%), Gaps = 28/322 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT--EIRAFIS 76 Q +L+++ RGLS T+ +Y D QF FLA + E + ++ + S T ++R F+ Sbjct: 24 QAFLEHVAQRRGLSPNTVVAYRGDLIQFFTFLAQHLE-LLDLRAFQPESVTPMDVRLFMG 82 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA-- 134 Q + RS+ R L +K F +YL++ I T ++ + K +P L E+Q Sbjct: 83 FLLEQGVKQRSIARKLVAVKVFYRYLQEHGIITTCLFSSLGSPKFPQRVPNFLTEEQTSK 142 Query: 135 ----LTLVDNVLLHTSHET-----KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 L V N + S + AR+ +IL LLY GLR+SE ++L + ++ Sbjct: 143 LFELLETVPNGAVSDSQPANSALHAFTAARDCSILELLYSSGLRVSELVNLRMDELDVER 202 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI----RGKPLNPG 241 +++ GKG++ RIVP+ + +A+ +Y+++ +N ++ F + +G + P Sbjct: 203 GYVKVHGKGNRERIVPVGAAAIEALKKYFEVRRNFFRMNKEVEPFTSVFVTQKGAKIYPM 262 Query: 242 VFQRYIRQLRRYLGLPLS---TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + QR R+L L H LRH+FATHLL++G DL S+ +LGH L+TT++Y Sbjct: 263 LVQRVTA---RHLSLVTEQKKKNPHLLRHTFATHLLNSGADLESVSEMLGHSNLATTELY 319 Query: 299 TNVNSKNGGDWMMEIYDQTHPS 320 T+V + + E+Y + HP+ Sbjct: 320 THVTF----ERLKEVYRKAHPN 337 >gi|300692939|ref|YP_003753934.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07] gi|299079999|emb|CBJ52674.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07] Length = 329 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 98/325 (30%), Positives = 162/325 (49%), Gaps = 39/325 (12%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L+ ER LS+ TL SY R+ + + I + QL IR +++ Sbjct: 23 YLDTLKFERQLSQHTLASY---ARELAVLQQLGAQFAAGIDLM-QLQPHHIRRMMAQLHG 78 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVD 139 + RS+ R+LS + + ++L R +N ++ +R K LP+AL+ +QA+ L++ Sbjct: 79 GGLSGRSIARALSAWRGWYRWLALRDAAVTANPVDGVRAPKSPKKLPKALSVEQAVALME 138 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----------MD-DQSTL 188 L ET R+ A+ L Y CGLR+SE + L +++ +D D + Sbjct: 139 Q-LPGDDPET----VRDRAVNELFYSCGLRLSELVGLDLRHVRAGDYESASWLDLDTREV 193 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYY---------DLCPFDLNLNIQLPLFRGIRGKPLN 239 + GKG K R VP+ +A++ + D P D + LF RGK L Sbjct: 194 MVLGKGSKRRTVPVGRKAAEALVAWLAARPQLARPDAAPEDAHA-----LFLSARGKRLA 248 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 Q +++ G+P H LRHSFATH+L + GDLR++Q +LGH +++TQ+YT Sbjct: 249 QRQIQMRMKRNAIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT 308 Query: 300 NVNSKNGGDWMMEIYDQTHPSITQK 324 +++ ++ + +IYDQ HP +K Sbjct: 309 SLDFQH----LAKIYDQAHPRAKKK 329 >gi|113969139|ref|YP_732932.1| tyrosine recombinase XerD [Shewanella sp. MR-4] gi|113883823|gb|ABI37875.1| tyrosine recombinase XerD [Shewanella sp. MR-4] Length = 300 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 98/300 (32%), Positives = 155/300 (51%), Gaps = 16/300 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +L +GLS TL +Y D R F + ++ ++ I ++ ++RA+++ R Sbjct: 14 FLDDLWSSKGLSDNTLSAYRTDLRHFDRY-----QQSQGLRLI-EVVQADVRAYLAYRVE 67 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q+ S R LS ++ F YL + K + + + K S LP +L+E Q VD Sbjct: 68 QQFARTSSARLLSSLRRFYTYLLQTKQIAGDPMALIESPKLSRQLPDSLSESQ----VDR 123 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 +L + + ++ R+ A+L LLY GLR+SE + LT + + Q +RI GKG K R+V Sbjct: 124 LLAEPNVDDP-VECRDKAMLELLYATGLRVSELVGLTLEQMSLRQGLVRIVGKGGKERLV 182 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ + Y +L N+Q + F R + + F I+ G+ Sbjct: 183 PMGELAITEVERYLSSARHELLGNVQSDVVFPSKRSQMMTRQTFWHRIKLYASRAGIETE 242 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + E++ Q HP Sbjct: 243 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARAR----LQELHQQHHP 298 >gi|229086384|ref|ZP_04218560.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-44] gi|228696900|gb|EEL49709.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-44] Length = 302 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 99/313 (31%), Positives = 161/313 (51%), Gaps = 35/313 (11%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q ++ L+IER SK T+ SY+ D F+ F+ E+ I + ++Y ++R +++ Sbjct: 11 QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYVDVRLYLTTL 65 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137 +K+ +S+ R +S ++S ++L R+ E N + +L KK S+P+ L ++ Sbjct: 66 HDEKLARKSVARKVSSLRSLYRFLM-REGYREDNPFALASLPKKEWSIPKFLYVEEL--- 121 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 L S + RN A+L L+Y G+R+SE +SL +I T+ + GKG K Sbjct: 122 --EKLFEVSDVKTPLGQRNQALLELMYATGIRVSECVSLQFTDIDFSVGTILVTGKGKKQ 179 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPL-NPGVFQRYI 247 R +P + A+ Y + N QL +F +G PL + GV RYI Sbjct: 180 RYIPFGSYAQDALTTYIE------NGRKQLAKKTEEHSQMVFLNAKGAPLTDRGV--RYI 231 Query: 248 -RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 L + L + + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ + Sbjct: 232 LNDLIKKASLTMKISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKER- 290 Query: 307 GDWMMEIYDQTHP 319 + +Y + HP Sbjct: 291 ---LRSVYMKHHP 300 >gi|148273162|ref|YP_001222723.1| site-specific tyrosine recombinase XerD [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831092|emb|CAN02037.1| integrase/recombinase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 328 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 99/332 (29%), Positives = 156/332 (46%), Gaps = 38/332 (11%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA----------FY 53 + +PE V L + WL+++E+ERGLS+ TLQ+Y D ++ LA Sbjct: 14 DAVPE-VPVALRRAVDRWLRHVEVERGLSRNTLQAYRRDLARYTAHLADEGVADPADASA 72 Query: 54 TEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI 113 Q +R + + A SL R LS ++SF ++L + I Sbjct: 73 AHIAAFAQRVRDPEHGGLTA------------SSLARMLSSVRSFHRFLVEEGIVEVDVS 120 Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173 R K + LP+A++ + ++D + + + R+ A+L LLY G R+SE Sbjct: 121 AEQRPPKLPSRLPKAVSIETMGRILD-----ATDGDEPLRVRDKALLELLYATGARVSEI 175 Query: 174 LSLTPQNIMDDQST----LRIQGKGDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLP 228 +LT +++ +R+ GKG K RIVP+ R+A+ Y + P P Sbjct: 176 TALTVDDVLGADGAAAELVRVLGKGGKQRIVPVGSFARRAVDAYLVRVRPILAARGSATP 235 Query: 229 -LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 LF G+RG L+ I+ G+ + HT RHSFATHL++ G D+R +Q +L Sbjct: 236 ALFLGLRGHALSRQNAWLVIKAAAERAGVAEEISPHTFRHSFATHLIAGGADVRVVQELL 295 Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 GH ++TTQIYT V D + ++Y HP Sbjct: 296 GHSSVATTQIYTRVTV----DTLRDVYTTAHP 323 >gi|291280177|ref|YP_003497012.1| tyrosine recombinase [Deferribacter desulfuricans SSM1] gi|290754879|dbj|BAI81256.1| tyrosine recombinase [Deferribacter desulfuricans SSM1] Length = 302 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 95/310 (30%), Positives = 163/310 (52%), Gaps = 22/310 (7%) Query: 15 LKERQNWLQNLEI-ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 LKE ++ +N I ER +S T++SY D + F+ E+K +++++ Y +R Sbjct: 3 LKEAIDYFENYLISERQVSSNTVKSYLNDLNDLVSFIK--DEDK----SLKEIDYFALRM 56 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 F++ + S++R ++ ++SF K+L KR + ++ ++ KK L + Sbjct: 57 FVAYLYDKGFSKSSIERKIATLRSFFKFLIKRGLIEDNPARMIKFPKKDKKLFTVFD--- 113 Query: 134 ALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 +D + LL + R++ IL LYG G+R+SE +++ +I +RI Sbjct: 114 ----IDTIFSLLELPDKETPSGIRDALILEFLYGTGVRVSELVNIKLDDIDFGGMRVRIF 169 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLNPGVFQRYIRQ 249 GKG K+R++PL + I +Y + + I LF G L +R + + Sbjct: 170 GKGKKMRVIPLSDYIMDLIKKYLSVRENIVQKGIVNTDHLFINKFGTALTDRSVRRIVDK 229 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 + GLPL+ + H+ RH+FATHLL NG DLR+IQ +LGH L+TTQ YT++N Sbjct: 230 YLKKAGLPLNYSPHSFRHTFATHLLENGADLRTIQKLLGHSSLATTQKYTHLNLSE---- 285 Query: 310 MMEIYDQTHP 319 ++++YD+THP Sbjct: 286 ILKVYDKTHP 295 >gi|52141657|ref|YP_085172.1| site-specific tyrosine recombinase XerC [Bacillus cereus E33L] gi|51975126|gb|AAU16676.1| site-specific integrase/recombinase XerD protein [Bacillus cereus E33L] Length = 299 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 92/311 (29%), Positives = 159/311 (51%), Gaps = 31/311 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q ++ L+IER SK T+ SY+ D F+ F+ E+ I + ++Y ++R +++ Sbjct: 8 QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDITYADVRLYLTTL 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137 +K+ +S+ R +S ++S ++L R+ + N + +L KK S+P+ L ++ Sbjct: 63 HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 118 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 L S + RN A+L L+Y G+R+SE ++L +I T+ + GKG K Sbjct: 119 --EELFEVSDTATPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 176 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248 R +P + A++ Y + N QL +F +G PL + + Sbjct: 177 RYIPFGSYAQDALITYIE------NGRKQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLN 230 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 +L + L + + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ + Sbjct: 231 ELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 286 Query: 309 WMMEIYDQTHP 319 + +Y + HP Sbjct: 287 RLRSVYMKHHP 297 >gi|330969023|gb|EGH69089.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. aceris str. M302273PT] Length = 298 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 101/308 (32%), Positives = 149/308 (48%), Gaps = 32/308 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISKRR 79 +L L +E+GLS T SY D +F + E + I R++ I ++ R Sbjct: 12 FLDALWLEKGLSDNTRDSYRSD---LALFNGWLQERNVDLISAGREV----ILDHLAWRV 64 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 RS R LSG + F +YL + K+ L + + LP++L+E Sbjct: 65 ENAYKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLPKSLSEADV----- 119 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 LL ++ I R+ A+L +LY CGLR++E +SLT + + Q LR+ GKG K R+ Sbjct: 120 EALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERL 179 Query: 200 VPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 VP+ +R A E P D+ LF RG + F I+ Sbjct: 180 VPMGEESIVWVERYLRGARDELLGGKPSDV-------LFPSTRGDQMTRQTFWHRIKHQA 232 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 G+ S + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + Sbjct: 233 TVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----LQ 288 Query: 312 EIYDQTHP 319 E++ + HP Sbjct: 289 EMHARHHP 296 >gi|326335596|ref|ZP_08201783.1| integrase/recombinase XerD [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692362|gb|EGD34314.1| integrase/recombinase XerD [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 297 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 97/315 (30%), Positives = 164/315 (52%), Gaps = 31/315 (9%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +LLK+ +++L+ IERG+S+ ++ SY D + F+A + E+ + +S +R Sbjct: 4 KLLKDFEHYLK---IERGMSENSVHSYLFDMEKLREFVAIHQIEETPVN----ISAETLR 56 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 FI + +++ RS R +S +KSF K+L + + + K LP L+ + Sbjct: 57 MFIYEV-GKELHARSQSRLISALKSFFKFLLLENYREDFPMETIDTPKFGMKLPDTLSLE 115 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + ++ + L T RN AI+ LYGCGLR+SE ++L ++ + +R+ G Sbjct: 116 EIDAIIAGIDLSTEE-----GHRNRAIIETLYGCGLRVSELVNLHLSDLFFSEGFIRVLG 170 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL--------FRGIRGKPLNPGVFQ 244 KG+K R+VP+ +K I Y L+ +P+ F RGK L + Sbjct: 171 KGNKQRLVPISEYTQKEINNYI------LHQRKNIPIVKEFSDIVFLNRRGKQLTRAMIF 224 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 I+Q +GL + + HT RHSFATHLL NG +LR+IQ +LGH + TT+IYT+++ Sbjct: 225 TIIKQAASAIGLTKTISPHTFRHSFATHLLENGANLRAIQLMLGHESIITTEIYTHIDH- 283 Query: 305 NGGDWMMEIYDQTHP 319 ++ ++ + HP Sbjct: 284 ---SYLSQVINTYHP 295 >gi|227498489|ref|ZP_03928635.1| tyrosine recombinase xerC [Acidaminococcus sp. D21] gi|226903947|gb|EEH89865.1| tyrosine recombinase xerC [Acidaminococcus sp. D21] Length = 302 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 94/312 (30%), Positives = 156/312 (50%), Gaps = 32/312 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ L +ER S T+ +Y+ D F +FL+ + T ++S +IR+++++ Sbjct: 10 ERFLRYLRVERNDSPNTILNYKDDLIAFSVFLSGRGK-----ATWLEVSLLDIRSYLAQL 64 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 ++ R++ R +S ++SF +YL + +T ++ ++ K LP L E + Sbjct: 65 HREEKARRTIARRISSLRSFYRYLMREGLTDKNPFTKVKTPKLEKKLPVFLEEFEM---- 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 N LL + + R+ A+L LY G R+SE + LT + + GKG K R Sbjct: 121 -NHLLELPDLSTELGQRDRALLEFLYSTGCRVSELVGLTLTRLDLSNRYALLLGKGHKER 179 Query: 199 IVPL-----------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 IVPL L R+ ++E Y++ D +F RG PL +R + Sbjct: 180 IVPLGHPCIRAMNAYLTGARRVLMEKYEVPSHDF-------IFVNHRGTPLTARSVRRIL 232 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 + + + HT+RH+FATHLL +G DLRS+Q +LGH LSTTQIYT+V + Sbjct: 233 DRYVEMASIQKHVSPHTIRHTFATHLLDHGADLRSVQELLGHASLSTTQIYTHVTA---- 288 Query: 308 DWMMEIYDQTHP 319 D + +Y + HP Sbjct: 289 DRIASVYKKHHP 300 >gi|197285863|ref|YP_002151735.1| tyrosine recombinase [Proteus mirabilis HI4320] gi|227356364|ref|ZP_03840752.1| tyrosine recombinase [Proteus mirabilis ATCC 29906] gi|34222762|sp|O31206|XERD_PROMI RecName: Full=Tyrosine recombinase xerD gi|2645800|gb|AAB87499.1| site-specific recombinase [Proteus mirabilis] gi|194683350|emb|CAR44057.1| tyrosine recombinase [Proteus mirabilis HI4320] gi|227163474|gb|EEI48395.1| tyrosine recombinase [Proteus mirabilis ATCC 29906] Length = 313 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 96/303 (31%), Positives = 157/303 (51%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L ++ +E+GLS TL +Y D + +L +++ T+ ++ AF++ R Sbjct: 24 EQFLDSIWLEQGLSANTLSAYRLDLQALSQWLVTQKLNWLSVTTL------DLHAFLATR 77 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S R LS ++ F +YL + K+ + + K LP+ L+E+Q V Sbjct: 78 LDEGYKATSAARLLSTLRRFFQYLYREKLRQDDPSALLSTPKLPKRLPKDLSEQQ----V 133 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 +N LL + I+ R+ A+L +LY CGLR+SE + L+ +I Q LR+ GKGDK R Sbjct: 134 EN-LLSAPCIDEPIELRDKAMLEVLYACGLRVSELVGLSLSDISLRQGVLRVIGKGDKER 192 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL + +Y P + +F +RG+ + F I+ G+ Sbjct: 193 LVPLGEEAIYWLEQYLQYGRPALMQGKTDDIVFPSLRGQKMTRQTFWHRIKHYAVIAGID 252 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + ++ Q Sbjct: 253 SEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKVLHQQ 308 Query: 317 THP 319 HP Sbjct: 309 HHP 311 >gi|330970503|gb|EGH70569.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. aceris str. M302273PT] Length = 299 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 97/306 (31%), Positives = 152/306 (49%), Gaps = 21/306 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 + +L ER +S TL++Y D + L + +K + + L +R+F +++ Sbjct: 8 YCMHLRSERQVSPHTLEAYRRDLGKVLAYC-----QKAQVSSWSDLDIQHLRSFTARQHQ 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q RSL R LS ++ F KYL + I + K LP+ L+ +A L+D Sbjct: 63 QGQSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRAAQLLDG 122 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + E ++ R+ AIL LLY GLR+SE L + +++ GKG K R++ Sbjct: 123 GV-----EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVL 177 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPL 258 P+ R+A LE + P N Q +F +GK L P Q ++ R LG L Sbjct: 178 PVGSKARQA-LEVW--LPLRALTNPQDDAVFVSQQGKRLGPRAIQVRLKAAGERELGQNL 234 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 H LRHSFA+HLL + DLR++Q +LGH + TTQIYT+++ ++ + +YD H Sbjct: 235 HP--HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATVYDSAH 288 Query: 319 PSITQK 324 P +K Sbjct: 289 PRAKRK 294 >gi|66043455|ref|YP_233296.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. syringae B728a] gi|75503929|sp|Q500B4|XERC_PSEU2 RecName: Full=Tyrosine recombinase xerC gi|63254162|gb|AAY35258.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] Length = 299 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 97/306 (31%), Positives = 152/306 (49%), Gaps = 21/306 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 + +L ER +S TL++Y D + L + +K + + L +R+F +++ Sbjct: 8 YCMHLRSERQVSPHTLEAYRRDLGKVLAYC-----QKAQVSSWSDLDIQHLRSFTARQHQ 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q RSL R LS ++ F KYL + I + K LP+ L+ +A L+D Sbjct: 63 QGQSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRAAQLLDG 122 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + E ++ R+ AIL LLY GLR+SE L + +++ GKG K R++ Sbjct: 123 GV-----EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVL 177 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPL 258 P+ R+A LE + P N Q +F +GK L P Q ++ R LG L Sbjct: 178 PVGSKARQA-LEVW--LPLRALTNPQDDAVFVSQQGKRLGPRAIQVRLKAAGERELGQNL 234 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 H LRHSFA+HLL + DLR++Q +LGH + TTQIYT+++ ++ + +YD H Sbjct: 235 HP--HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATVYDSAH 288 Query: 319 PSITQK 324 P +K Sbjct: 289 PRAKRK 294 >gi|332297599|ref|YP_004439521.1| Tyrosine recombinase xerC [Treponema brennaborense DSM 12168] gi|332180702|gb|AEE16390.1| Tyrosine recombinase xerC [Treponema brennaborense DSM 12168] Length = 311 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 84/271 (30%), Positives = 152/271 (56%), Gaps = 10/271 (3%) Query: 34 LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93 +T ++Y FL +L + Q + +++ ++ ++ +R+T + ++ + +S Sbjct: 32 MTAETYSGAVSLFLDWLQKKHPAESVEQALERVTVQDLLYYLVQRKTVGADELTIAKDIS 91 Query: 94 GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153 ++SF +L R + +E+ + K +LPR L+ +Q T ++ + + ++ + Sbjct: 92 ALRSFGNFLVARHVWSENCACLLERPKARRALPRVLSPEQVETFLNAIDV-----SEPLG 146 Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213 R+ A+ L+Y CGLRISEA L QN+ + + ++GKGDK RIVP + + + + Sbjct: 147 VRDRALFELIYSCGLRISEASGLLLQNLHLKERIVLVRGKGDKERIVPFGDAALRWLSSW 206 Query: 214 YDLCPFDLNLNIQLP-LFRGIRGKPLN-PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 L + Q+P +F +G PL+ G+++R+ +++ G+ S HTLRHSFAT Sbjct: 207 LSEYRPQLVGSRQIPYVFVNYKGMPLSRKGIWKRF-QEIEVRSGV--SAKVHTLRHSFAT 263 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 HLL+ G DLRS+Q +LGH L TTQIYT+++ Sbjct: 264 HLLAGGADLRSVQELLGHSDLVTTQIYTHID 294 >gi|189485661|ref|YP_001956602.1| tyrosine recombinase XerD [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287620|dbj|BAG14141.1| tyrosine recombinase XerD [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 294 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 92/300 (30%), Positives = 166/300 (55%), Gaps = 17/300 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +++ + +E+GLS+ T+ +Y+ D L F+ F +++I+++ + +I F+ + + Sbjct: 10 DFISYIIVEKGLSENTVLAYKADV---LKFINFAKKKRISLE---NFEHNDITDFLWEMK 63 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 T+ + RS+ R + ++ F K+L + + L + + +LP L + VD Sbjct: 64 TEGLKPRSIFRVIESLRQFYKFLNSEDLAKNNPTLYL----ATPNLPENLPDILTFDEVD 119 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 +LL++ ++ + RN A+L LLY GLR+SE ++L +I + LRI GKG K R+ Sbjct: 120 -LLLNSINDDDEMHIRNKAMLELLYAAGLRVSELINLKFSDINLEDCFLRIIGKGSKERL 178 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 VP + I Y LN+N + + R GK L+ F R ++ + + +G+ + Sbjct: 179 VPFGNKAKFFISIYLKKRRPCLNVNDHIFISR--LGKKLSRIEFWRQLKNIAKNVGINKN 236 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T HTLRHSFA+HLL G D+R +Q +LGH ++TTQIYT+++ D +++ + + HP Sbjct: 237 ITPHTLRHSFASHLLKGGADIRFVQEMLGHASITTTQIYTHLDE----DRIVQQHKKFHP 292 >gi|330950740|gb|EGH51000.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae Cit 7] Length = 298 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 101/308 (32%), Positives = 150/308 (48%), Gaps = 32/308 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISKRR 79 +L L +E+GLS T SY D +F + E + I R++ I ++ R Sbjct: 12 FLDALWLEKGLSDNTRDSYRSD---LALFNGWLQERNVDLISAGREV----ILDHLAWRV 64 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 RS R LSG + F +YL + K+ + L + + LP++L+E Sbjct: 65 ENAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADV----- 119 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 LL ++ I R+ A+L +LY CGLR++E +SLT + + Q LR+ GKG K R+ Sbjct: 120 EALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERL 179 Query: 200 VPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 VP+ +R A E P D+ LF RG + F I+ Sbjct: 180 VPMGEESIVWVERYLRGARDELLGGKPSDV-------LFPSSRGDQMTRQTFWHRIKHQA 232 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 G+ S + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + Sbjct: 233 TVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----LQ 288 Query: 312 EIYDQTHP 319 E++ + HP Sbjct: 289 ELHAKHHP 296 >gi|261820181|ref|YP_003258287.1| site-specific tyrosine recombinase XerD [Pectobacterium wasabiae WPP163] gi|261604194|gb|ACX86680.1| tyrosine recombinase XerD [Pectobacterium wasabiae WPP163] Length = 299 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 97/304 (31%), Positives = 156/304 (51%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ER L++ TL SY D R +LA + + +Q + +++AF++ R Sbjct: 10 EQFLDALWLERNLAENTLASYRLDLRTLAEWLAHRDNDFLQVQAL------DLQAFLADR 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ F +YL + K+ ++ + + K LP+ L+E Q L+ Sbjct: 64 VDGGYKATSSARLLSAMRRFFQYLYREKLRSDDPSAVLSSPKLPLRLPKDLSEAQVGALL 123 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + ++ R+ A+L +LY GLR+SE + LT ++ Q +R+ GKG+K R Sbjct: 124 DAPSIEQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVLGKGNKER 178 Query: 199 IVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VPL I EYY P+ LN LF R + + F I+ + Sbjct: 179 LVPLGEEAVYWI-EYYLEHGRPWLLNGQTLDVLFPSNRARQMTRQTFWHRIKHYAVQASI 237 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Sbjct: 238 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQ 293 Query: 316 QTHP 319 Q HP Sbjct: 294 QHHP 297 >gi|170693977|ref|ZP_02885133.1| tyrosine recombinase XerC [Burkholderia graminis C4D1M] gi|170141049|gb|EDT09221.1| tyrosine recombinase XerC [Burkholderia graminis C4D1M] Length = 307 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 89/317 (28%), Positives = 154/317 (48%), Gaps = 31/317 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L NLE ER LS TL+ Y + Q + + + L+ ++R +S+ Sbjct: 10 YLSNLEHERRLSAHTLRGYTHELEQLRLL--------AKGRPLESLTAVDVRGAVSRAHA 61 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS+ LS ++F ++L R + + +R K+ +LP+AL+ A N Sbjct: 62 GGLTARSISHRLSAWRAFYRWLAGRIDLPANPVATVRAPKQPKALPKALSVDDA-----N 116 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD------------DQSTL 188 L+ + R+ A+L L Y GLR+SE + L + D D + + Sbjct: 117 RLMESPPAASAEGLRDHAMLELFYSSGLRLSELVGLDAR-FADADGYRSAGWLKLDSAEV 175 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 + GKG + RIVP+ A+ + + + + PLF RG L+P V + ++ Sbjct: 176 EVLGKGKRRRIVPVGSKALTALNAWLAVRDQMVKHDPH-PLFLSARGNRLSPNVVRERVK 234 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 + G+P + H LRHSFATH+L + GDLR++Q +LGH ++ TQ+YT ++ ++ Sbjct: 235 RAALLAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTGLDFQH--- 291 Query: 309 WMMEIYDQTHPSITQKD 325 + +YDQ HP +++ Sbjct: 292 -LARVYDQAHPRAKKRE 307 >gi|32474020|ref|NP_867014.1| integrase/recombinase [Rhodopirellula baltica SH 1] gi|32444557|emb|CAD74556.1| integrase/recombinase [Rhodopirellula baltica SH 1] gi|327543299|gb|EGF29732.1| integrase/recombinase [Rhodopirellula baltica WH47] Length = 300 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 93/302 (30%), Positives = 146/302 (48%), Gaps = 15/302 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +LQ + ER S LT+++Y D F ++ +I + + L+ ++R F + + Sbjct: 8 FLQYMATERNASDLTIKAYREDLFAFAEWIGQAEAGRIQLDS---LTPQQLRQFQAALQQ 64 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 ++ R L+ ++SF K+ + + + + +RN + S LP L ++ Sbjct: 65 AGYARTTIARKLASLRSFFKFAMREGMASSNPAKPLRNPRSSRKLPHVLTSEEV-----G 119 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LL R+ AIL +Y GLR+SE + L ++ Q R++GKG K RI Sbjct: 120 RLLVAPPAISEAGLRDRAILETMYSSGLRVSELVGLRDGDLDFSQGITRVRGKGRKERIS 179 Query: 201 PLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 PL KAI Y P L P+F G L R + + L Sbjct: 180 PLGSYAIKAIQAYAGRRSRSPESEKLGRAAPVFVNRFGNILTTRSVGRMLEKYIAKAELD 239 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T+ HTLRHSFATHLL G D+RS+Q +LGH L+TTQIYT+V++ N + ++Y++ Sbjct: 240 TRTSPHTLRHSFATHLLDRGADIRSVQELLGHKSLTTTQIYTHVSAAN----LRQVYEKA 295 Query: 318 HP 319 HP Sbjct: 296 HP 297 >gi|289209264|ref|YP_003461330.1| tyrosine recombinase XerD [Thioalkalivibrio sp. K90mix] gi|288944895|gb|ADC72594.1| tyrosine recombinase XerD [Thioalkalivibrio sp. K90mix] Length = 301 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 99/310 (31%), Positives = 148/310 (47%), Gaps = 35/310 (11%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L GLS TL +Y D L LA + + + S ++ AF+S R Sbjct: 14 FLDELWAVEGLSDHTLAAYRRD----LEALARWLHGRGV--ALEAASSADLLAFVSARMQ 67 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 +S+ R+LS I+ F +YL + + + + + LP +L+E Q L+ Sbjct: 68 AGARPKSITRALSSIRRFYRYLVHQGEREDDPSAGIESPRAGRPLPDSLSETQVNALLAA 127 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LHT + R+ A+L L+Y GLR+SE + L + Q +RI GKGDK R+V Sbjct: 128 PELHTE-----VGLRDRAMLELMYATGLRVSELVGLEQSEVNSRQGVVRITGKGDKERLV 182 Query: 201 PL-----------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 PL L R A++ + P D +F RG+ L F I+ Sbjct: 183 PLGEEAAHWLARYLREARGALMSGH--PPVDT-------VFVTRRGRGLTRQAFWYRIKH 233 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 + G+ + + HTLRH+FATHLL +G DLR +Q +LGH LSTTQIYT+V Sbjct: 234 YAQVAGIEVPLSPHTLRHAFATHLLDHGADLRVVQMLLGHSSLSTTQIYTHVARAR---- 289 Query: 310 MMEIYDQTHP 319 + ++ + HP Sbjct: 290 LQSLHAEHHP 299 >gi|56964041|ref|YP_175772.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16] gi|56910284|dbj|BAD64811.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16] Length = 300 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 92/302 (30%), Positives = 155/302 (51%), Gaps = 16/302 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +++ +++E+ SK T+ Y D +QF F++ I I+ + + ++R FIS+ Sbjct: 11 QFVRYVQVEKNGSKWTIDHYRKDVQQFAAFMS-----AAGIAEIKDVKHQDVRLFISELV 65 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 +K +S+ R LS ++SF K+L + +E+ L+ K+ LP L E++ ++ Sbjct: 66 DKKYARKSIARKLSALRSFGKFLMEEGHISENPFLHTHLPKQKTRLPTFLYEEE----ME 121 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + LL K ++ R+ AI+ LLY G+R+SE L T+R+ GKG K R Sbjct: 122 HWLLALP-ANKPLEKRDKAIIELLYATGMRVSECSMLALDQWDRVSETVRVFGKGRKERY 180 Query: 200 VPLLPSVRKAILEY-YDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 VP+ A+ Y ++ P L N LF RG L+ ++ + + + Sbjct: 181 VPVGKMAVSAVESYIHEARPKLLRANDPTSHLFLNYRGGALSDRSIRKIVEKRLDEAAMQ 240 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + H +RHSFATHLL+ G DLR++Q +LGH L TTQ+YT+V+ + + +Y Sbjct: 241 KKISPHAIRHSFATHLLNAGADLRAVQELLGHQSLKTTQVYTHVSKER----LYAVYKGA 296 Query: 318 HP 319 HP Sbjct: 297 HP 298 >gi|255291939|dbj|BAH90427.1| tyrosine recombinase [uncultured bacterium] Length = 320 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 86/313 (27%), Positives = 156/313 (49%), Gaps = 25/313 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+++ +E+ L+ T+ Y D + F ++ + + ++ T +R ++++ Sbjct: 16 ERYLEHVRVEKRLAARTVTLYGLDLDKLG---QFAVQDDVGLTAVQG---THVRRWVARM 69 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + LSG + F +L ++ + + + ++R ++ LP+AL +A+ L Sbjct: 70 HAGGRSGRGIALILSGWRGFYAWLGRQGLIAANPVQDVRAPRQPRPLPKALGVDEAVQLA 129 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQN---------IMDDQST 187 ++V + W+DAR++A++ LLYG GLR+ E L LT + I + Sbjct: 130 EHV---AESDDPWLDARDAAMVELLYGSGLRVGELAGLDLTASDAALQAGRGWIDLAGAE 186 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 +++QGKG K R+VPL A+ + L LF G RG L + Sbjct: 187 VQVQGKGAKRRVVPLGRQAVAALRHWLALRGQVAAVDAAAQALFIGRRGTRLTAQAIWQR 246 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 +++ GL H LRHSFA+HLL + GDLR++Q +LGH + TTQ+YT ++ ++ Sbjct: 247 LKRRSLQAGLATPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANIGTTQVYTRLDFQH- 305 Query: 307 GDWMMEIYDQTHP 319 + + YD HP Sbjct: 306 ---LAQAYDAAHP 315 >gi|237800088|ref|ZP_04588549.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022943|gb|EGI03000.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. oryzae str. 1_6] Length = 298 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 100/308 (32%), Positives = 149/308 (48%), Gaps = 32/308 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKRR 79 +L L +E+GLS T SY D +F + E + + R++ I ++ R Sbjct: 12 FLDALWLEKGLSDNTRDSYRSD---LALFNGWLQERNVDLPVAGREV----ILDHLAWRV 64 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 RS R LSG + F +YL + K+ L + + LP++L+E Sbjct: 65 ENAYKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLPKSLSEADV----- 119 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 LL ++ I R+ A+L +LY CGLR++E +SLT + + Q LR+ GKG K R+ Sbjct: 120 EALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERL 179 Query: 200 VPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 VP+ +R A E P D+ LF RG + F I+ Sbjct: 180 VPMGEEAIVWVERYMRGARDELLGGKPSDV-------LFPSTRGDQMTRQTFWHRIKHQA 232 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 G+ S + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + Sbjct: 233 TVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----LQ 288 Query: 312 EIYDQTHP 319 E++ + HP Sbjct: 289 EMHAKHHP 296 >gi|228954107|ref|ZP_04116136.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229071329|ref|ZP_04204552.1| Tyrosine recombinase xerC [Bacillus cereus F65185] gi|229081086|ref|ZP_04213596.1| Tyrosine recombinase xerC [Bacillus cereus Rock4-2] gi|229192000|ref|ZP_04318970.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 10876] gi|228591551|gb|EEK49400.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 10876] gi|228702130|gb|EEL54606.1| Tyrosine recombinase xerC [Bacillus cereus Rock4-2] gi|228711783|gb|EEL63735.1| Tyrosine recombinase xerC [Bacillus cereus F65185] gi|228805673|gb|EEM52263.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 299 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 90/308 (29%), Positives = 162/308 (52%), Gaps = 25/308 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q ++ L+IER SK T+ SY+ D F+ F+ E+ I + ++Y ++R +++ Sbjct: 8 QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYLTTL 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137 +K+ +S+ R +S ++S ++L R+ + N + +L KK S+P+ L ++ Sbjct: 63 HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 118 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 L S + RN A+L L+Y G+R+SE ++L +I T+ + GKG K Sbjct: 119 --EELFEVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 176 Query: 198 RIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 R +P + +++ Y + + D + ++ +F +GKPL + + +L Sbjct: 177 RYIPFGSYAQDSLITYIENGRKQLVNKTDEDSHM---VFLNAKGKPLTSRGVRYVLNELI 233 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 + L + + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ + + Sbjct: 234 KKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----ERLR 289 Query: 312 EIYDQTHP 319 +Y + HP Sbjct: 290 SVYMKHHP 297 >gi|229117317|ref|ZP_04246695.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-3] gi|228666217|gb|EEL21681.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-3] Length = 302 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 92/311 (29%), Positives = 161/311 (51%), Gaps = 31/311 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q ++ L+IER SK T+ SY+ D F+ F+ E+ I + ++Y ++R +++ Sbjct: 11 QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYLTTL 65 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137 +K+ +S+ R +S ++S ++L R+ + N + +L KK S+P+ L ++ L Sbjct: 66 HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEELEEL 124 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 + + T + RN A+L L+Y G+R+SE ++L +I T+ + GKG K Sbjct: 125 FEVSDMETP-----LGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 179 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248 R +P + A++ Y + N QL +F +G PL + + Sbjct: 180 RYIPFGSYAQDALITYME------NGRKQLANKTEEQSHMVFLNAKGTPLTSRGVRYVLN 233 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 +L + L + + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ + Sbjct: 234 ELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 289 Query: 309 WMMEIYDQTHP 319 + +Y + HP Sbjct: 290 RLRSVYMKHHP 300 >gi|226227035|ref|YP_002761141.1| tyrosine recombinase XerD [Gemmatimonas aurantiaca T-27] gi|226090226|dbj|BAH38671.1| tyrosine recombinase XerD [Gemmatimonas aurantiaca T-27] Length = 312 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 88/304 (28%), Positives = 157/304 (51%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q + L+IE G S T+++Y D + + I + ++ +R F+ Sbjct: 23 QAFEDALQIEEGASPRTIEAYRRD-----VIRCAAQMRAMGITQAKDITPAALREFVYHL 77 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + S++R++S ++++ + + + T + + ++ +LP L+ V Sbjct: 78 KDLGLAGSSIRRNISALRTWFRIMVAEGLVTTDPTERLDSPQRWRTLPEVLS-------V 130 Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 D V LL + + R+ A+L L YG GLR+SE + ++ +++M + S +R+ GKG+K Sbjct: 131 DEVTRLLAAPGLDERLAFRDRAMLELAYGAGLRVSEWIGMSVKDVMLEDSLVRVLGKGNK 190 Query: 197 IRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 R+VP+ S A+ Y +L P + LF RG PL+ + +R+ G Sbjct: 191 ERLVPIGRSAIGAVAVYLRELRPVLERGGGKGILFLNGRGAPLSRMGAWKLVRKYVGMAG 250 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + HTLRHSFATHLL G DLR++Q +LGH ++TTQIYT+V+ +++ ++ Sbjct: 251 IEKPVSPHTLRHSFATHLLEGGADLRAVQEMLGHADIATTQIYTHVDR----EYLRSVHR 306 Query: 316 QTHP 319 Q HP Sbjct: 307 QFHP 310 >gi|146305305|ref|YP_001185770.1| site-specific tyrosine recombinase XerC [Pseudomonas mendocina ymp] gi|145573506|gb|ABP83038.1| tyrosine recombinase XerC subunit [Pseudomonas mendocina ymp] Length = 315 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 98/320 (30%), Positives = 156/320 (48%), Gaps = 29/320 (9%) Query: 10 VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69 V+FE +L++L ER +S TL Y D + L F E + L Sbjct: 16 VTFE--AHLDAYLEHLRRERQVSVHTLDGYRRDLGKLLAFC-----EAEGLSDWAALDTR 68 Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 +R I++ Q + RSL R LS + +YL + + + K+ LPR L Sbjct: 69 SLRRLIARLHAQGLASRSLARLLSATRGLYQYLLREGLCRHDPAAGLSPPKRERRLPRTL 128 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 + ++ L+D + E +I R+ A+L L Y GLR+SE + L + +R Sbjct: 129 DADRSAQLLDGAV-----EDDFIARRDQAMLELFYSSGLRLSELVGLDVDGLDLPAGLVR 183 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245 ++GKG+K R +P+ R+A+ ++ L P D + F +G+ L P Q Sbjct: 184 VRGKGNKTRELPVGSMARQALEQWLPLRKLAGPSDGAV------FISQQGRRLGPRAVQL 237 Query: 246 YIRQLR-RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 +RQ R LG L H LRHSFA+H+L + DLR++Q +LGH ++TTQIYT+++ + Sbjct: 238 RVRQAGVRELGQHLHP--HMLRHSFASHMLESSQDLRAVQELLGHADIATTQIYTHLDFQ 295 Query: 305 NGGDWMMEIYDQTHPSITQK 324 + + +YDQ HP +K Sbjct: 296 H----LATVYDQAHPRAKRK 311 >gi|253997885|ref|YP_003049948.1| tyrosine recombinase XerC [Methylovorus sp. SIP3-4] gi|253984564|gb|ACT49421.1| tyrosine recombinase XerC [Methylovorus sp. SIP3-4] Length = 292 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 94/304 (30%), Positives = 157/304 (51%), Gaps = 19/304 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +L ER LS LT ++Y+ D R + L E + + ++ T IR ++ Sbjct: 8 YLDHLSHERRLSPLTRENYQRDLR---VLLELNGEVPL-----QNMTGTHIRRHVATLHG 59 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + +G RS+ R LS + F ++L +R + + +R K SLP AL+ QA+ LV Sbjct: 60 RNLGGRSIARMLSAWRGFFEFLIQRHGFSANPCQGIRAPKSPKSLPHALSPDQAVQLV-- 117 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + + + R+ A+L L Y GLR++E ++L + + T+ + GKG+K RIV Sbjct: 118 ----SIDDEDTLAQRDHAMLELFYSSGLRLAELVNLDLDALNLGEGTITVTGKGNKTRIV 173 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 P+ A L+ + L + LF GK L+ Q ++Q G+ + Sbjct: 174 PVGQHAMNA-LQAWLAIRSGLPIQDTSALFLSRLGKRLSRRAVQYRLQQWAIRQGINIRV 232 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 H LRHSFA+H+L + GDLR++Q +LGH +STTQ+YT+++ + + ++YD HP Sbjct: 233 HPHMLRHSFASHVLQSSGDLRAVQEMLGHANISTTQVYTHLDFHH----LAKVYDSAHPR 288 Query: 321 ITQK 324 +K Sbjct: 289 ARKK 292 >gi|294139500|ref|YP_003555478.1| integrase/recombinase XerD [Shewanella violacea DSS12] gi|293325969|dbj|BAJ00700.1| integrase/recombinase XerD [Shewanella violacea DSS12] Length = 305 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 96/300 (32%), Positives = 151/300 (50%), Gaps = 16/300 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +L RGLS TL +Y D R F ++ E + Q+S IR ++ R Sbjct: 19 FLDDLWSNRGLSDNTLAAYRTDLRHFDRYIQELGAELV------QVSQELIRGYLDVRFD 72 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + S R +S ++ F +L +K+ T I +++ K + LP +L+E + Sbjct: 73 KGFARTSSARMMSSLRRFFGFLLLKKMITADPIARIKSPKLARKLPDSLSEADV-----D 127 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 +LL+ I+ R+ A+L LLY GLR++E +SLT + + Q +R+ GKG K R+V Sbjct: 128 ILLNEPDIQDPIECRDRAMLELLYATGLRVTELVSLTMEQLSLRQGLVRVVGKGGKERLV 187 Query: 201 PLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 PL + Y +L + LF RG+ + F I+ G+ Sbjct: 188 PLGELAVSEVENYLQGARAELLKGKLSDVLFPSKRGQMMARQTFWYRIKLYALRAGIVTH 247 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + +++ + HP Sbjct: 248 ISPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKAR----LSQLHSEHHP 303 >gi|119505219|ref|ZP_01627294.1| site-specific tyrosine recombinase XerD [marine gamma proteobacterium HTCC2080] gi|119458910|gb|EAW40010.1| site-specific tyrosine recombinase XerD [marine gamma proteobacterium HTCC2080] Length = 282 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 92/297 (30%), Positives = 152/297 (51%), Gaps = 21/297 (7%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 +ERGLS+ TL +Y D + +LA T E + ++I++++ + Q R Sbjct: 1 MERGLSENTLAAYRRDLSLYDEWLAEQTAESLLTA-----GSSQIQSYLGLKLRQGASPR 55 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R LS +SF ++ + E L + + K+ LP++L+E L+ L + Sbjct: 56 SSARFLSAARSFYRWALREGHIVEDPTLRIESPKQGRPLPKSLSETDVERLLGAPDLELA 115 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 ++ R+ +L +LY CGLR+SE + L + + +Q +R+ GKG K R+VP+ Sbjct: 116 -----LEFRDRTMLEMLYACGLRVSELVGLQVEQVGLNQGIVRVLGKGGKERLVPMGEEA 170 Query: 207 RKAILEYYDLCPFDL----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 +++Y +L + N+ LF R + + F I+ G+ + Sbjct: 171 LDWLIQYMRGPRIELLKGQSSNV---LFPSNRSREMTRQTFWYRIKLYGERAGIQSHLSP 227 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + M E+++ HP Sbjct: 228 HTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKQR----MQELHEHHHP 280 >gi|71897645|ref|ZP_00679890.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] gi|71732548|gb|EAO34601.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] Length = 277 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 89/296 (30%), Positives = 148/296 (50%), Gaps = 19/296 (6%) Query: 31 LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90 +S TL +Y R +A+ ++ + + L +++AF+S + + +SL+R Sbjct: 1 MSSHTLDAYR---RDIGALIAWGGQQ--AVGEVVALDRAQLQAFVSAEHRRGLSAKSLQR 55 Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150 LS + F +L KR + +R K LPR L+ +A++ V +T Sbjct: 56 RLSACRGFYTWLVKRGHIAVNPAAGLRAPKALRKLPRILDADEAVSFV-----QIPTDTP 110 Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210 + R+ A+L L Y GLR+SE L + D + + GKG + R+VP+ A+ Sbjct: 111 -LGLRDRALLELFYSSGLRLSELCGLRWDGLDLDAGLVSVLGKGSRQRVVPVGSYALSAL 169 Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 E+ C Q P+F G G P++ Q I+QL + G+ H LRHSFA Sbjct: 170 REW---CASSGG-GAQQPVFPGRYGGPISARAVQVRIKQLAQRQGMAKHVHPHMLRHSFA 225 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326 +HLL + GDLR +Q +LGH ++TTQIYT+++ + ++ ++YD HP +K + Sbjct: 226 SHLLESSGDLRGVQELLGHADITTTQIYTHLDFQ----YLSKVYDAAHPRARRKAR 277 >gi|226311968|ref|YP_002771862.1| tyrosine recombinase [Brevibacillus brevis NBRC 100599] gi|226094916|dbj|BAH43358.1| probable tyrosine recombinase [Brevibacillus brevis NBRC 100599] Length = 295 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 92/300 (30%), Positives = 158/300 (52%), Gaps = 15/300 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 ++ L +E+GLS+ TL+SY+ R + F ++ E+ +T + + T I ++ R Sbjct: 8 FIHFLTVEKGLSRNTLESYQ---RDMVAFTSYLQEQGVT--RVEDSTRTHIIGYLLVLRE 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + +L R+++ I++F ++L + K + +++ K LP+ L+ ++ L+++ Sbjct: 63 KGRATATLSRNMASIRAFYQFLIRDKYIDKDPSIHLETPKIEKRLPKVLSVEEVERLLES 122 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + +H R+ A+L LLY G+R+SE ++L ++ D ++ GKG K RI+ Sbjct: 123 PPV--NHPAGL---RDKAMLELLYATGIRVSELVNLDSADVNLDMGFVKCLGKGSKERII 177 Query: 201 PLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 PL + + Y P + LF GK + F + I++ + + Sbjct: 178 PLGSVAIQMVRHYLQAGRPKMVKGTGDTALFLNHLGKQITRQGFWKIIKRYAQKSNIRAE 237 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T HTLRHSFATHLL NG DLRS+Q +LGH +STTQIYT+V + +IY +THP Sbjct: 238 ITPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHVTRTR----IKDIYAKTHP 293 >gi|86131894|ref|ZP_01050491.1| phage integrase family protein [Dokdonia donghaensis MED134] gi|85817716|gb|EAQ38890.1| phage integrase family protein [Dokdonia donghaensis MED134] Length = 299 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 98/302 (32%), Positives = 154/302 (50%), Gaps = 22/302 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 N+ L IERGLS T+ +Y D ++ L Y E+ Q++ +++ FI Sbjct: 9 NYKNYLRIERGLSDNTIDNYARDLKK----LTRYLEQLENSINPLQITREDLQEFIYTI- 63 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 +++ RS R +SG+K F YL T++ I + + K LP L+E++ L+D Sbjct: 64 AKEVQARSQARVISGLKGFFNYLVFEDYRTDNPIDLIESPKIGRKLPDTLSEEEIDALID 123 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + L K RN A+L LY CGLR++E +SL ++ ++ + + GKGDK R Sbjct: 124 AIDL-----GKPQGERNRAMLETLYSCGLRVTELISLKLSDLYFEEGFINVVGKGDKQRF 178 Query: 200 VPLLPSVRKAILEY-------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 VP+ +K I Y D+ P +++ LF RG+ L + I+ L Sbjct: 179 VPISEHTQKYINIYRNELRNHIDVKPEHVDI-----LFLNRRGRQLTRAMIFTIIKDLAI 233 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 + + + HT RHSFATHLL NG DLRSIQ +LGH ++TT+IY +V+ + M + Sbjct: 234 KADIKKNISPHTFRHSFATHLLQNGADLRSIQQMLGHESITTTEIYMHVDRNDLAREMAK 293 Query: 313 IY 314 + Sbjct: 294 FH 295 >gi|229098300|ref|ZP_04229247.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-29] gi|228685198|gb|EEL39129.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-29] Length = 302 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 92/311 (29%), Positives = 159/311 (51%), Gaps = 31/311 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q ++ L+IER SK T+ SY+ D F+ F+ E+ I + ++Y ++R +++ Sbjct: 11 QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYLTTL 65 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137 +K+ +S+ R +S ++S ++L R+ + N + +L KK S+P+ L ++ Sbjct: 66 HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 121 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 L S + RN A+L L+Y G+R+SE ++L +I T+ + GKG K Sbjct: 122 --EELFEVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 179 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248 R +P + A++ Y + N QL +F +G PL + + Sbjct: 180 RYIPFGSYAQDALITYME------NGRKQLANKTEEQSHMVFLNAKGTPLTSRGVRYVLN 233 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 +L + L + + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ + Sbjct: 234 ELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 289 Query: 309 WMMEIYDQTHP 319 + +Y + HP Sbjct: 290 RLRSVYMKHHP 300 >gi|119946910|ref|YP_944590.1| tyrosine recombinase XerD [Psychromonas ingrahamii 37] gi|119865514|gb|ABM04991.1| tyrosine recombinase XerD subunit [Psychromonas ingrahamii 37] Length = 298 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 103/303 (33%), Positives = 156/303 (51%), Gaps = 17/303 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +L +L +ERGLS+ TL+SY D R IFLA + ++ + Y R +S + Sbjct: 8 QFLDSLWLERGLSQNTLESYRHDLRLVEIFLATRLVSLCSASSLDLIDYFSCR--LSGEK 65 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 K + S R +S ++ + +YL + KI + + + K LP++L+E + VD Sbjct: 66 EYK--NASTARLMSALRRYYQYLCREKIREDDPSAKLESPKIIKPLPKSLSESE----VD 119 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 LL + T + R+ A+L LLY GLR+SE + L+ + I Q +R+ GKGDK R+ Sbjct: 120 G-LLSSPDLTDSVQFRDKAMLELLYATGLRVSELVGLSMEEINLKQGVVRVTGKGDKTRL 178 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 VPL + Y + DL L Q LF R + F I+ + G+ Sbjct: 179 VPLGEEAIYWVERYIEEARPDL-LKGQSSDVLFPSRRATVMVRQTFWHRIKFYAQLCGID 237 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL+ G DLR +Q +LGH LSTTQIYT++ D + E++ + Sbjct: 238 KEALSPHVLRHAFATHLLNYGADLRVVQMLLGHSNLSTTQIYTHI----AQDRLKELHQE 293 Query: 317 THP 319 HP Sbjct: 294 HHP 296 >gi|47570332|ref|ZP_00240977.1| site-specific recombinase, phage integrase family [Bacillus cereus G9241] gi|47552997|gb|EAL11403.1| site-specific recombinase, phage integrase family [Bacillus cereus G9241] Length = 302 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 92/311 (29%), Positives = 159/311 (51%), Gaps = 31/311 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q ++ L+IER SK T+ SY+ D F+ F+ E+ I + ++Y ++R +++ Sbjct: 11 QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDITYADVRLYLTTL 65 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137 +K+ +S+ R +S ++S ++L R+ + N + +L KK S+P+ L ++ Sbjct: 66 HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 121 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 L S + RN A+L L+Y G+R+SE ++L +I T+ + GKG K Sbjct: 122 --EELFEVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 179 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248 R +P + A++ Y + N QL +F +G PL + + Sbjct: 180 RYIPFGSYAQDALITYIE------NGRKQLAEKTEEHSHMVFLNAKGTPLTSRGVRYVLN 233 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 +L + L + + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ + Sbjct: 234 ELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 289 Query: 309 WMMEIYDQTHP 319 + +Y + HP Sbjct: 290 RLRSVYMKHHP 300 >gi|213969060|ref|ZP_03397199.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato T1] gi|301384045|ref|ZP_07232463.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. tomato Max13] gi|302058751|ref|ZP_07250292.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. tomato K40] gi|302131712|ref|ZP_07257702.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213926058|gb|EEB59614.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato T1] Length = 298 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 100/309 (32%), Positives = 150/309 (48%), Gaps = 32/309 (10%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKR 78 +L L +E+GLS T SY D +F + E + + R++ I ++ R Sbjct: 11 QFLDALWLEKGLSDNTRDSYRSD---LALFNGWLQERNVDLPGAGREV----ILDHLAWR 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 RS R LSG + F +YL + K+ + L + + LP++L+E Sbjct: 64 VENAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADV---- 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL ++ I R+ A+L +LY CGLR++E +SLT + + Q LR+ GKG K R Sbjct: 120 -EALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKER 178 Query: 199 IVPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 +VP+ +R A E P D+ LF RG + F I+ Sbjct: 179 LVPMGEEAIVWVERYMRGARDELLGGKPSDV-------LFPSTRGDQMTRQTFWHRIKHQ 231 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ S + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + Sbjct: 232 ATVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----L 287 Query: 311 MEIYDQTHP 319 E++ + HP Sbjct: 288 QEMHAKHHP 296 >gi|28868685|ref|NP_791304.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato str. DC3000] gi|28851924|gb|AAO54999.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato str. DC3000] gi|331016306|gb|EGH96362.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 298 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 100/308 (32%), Positives = 150/308 (48%), Gaps = 32/308 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKRR 79 +L L +E+GLS T SY D +F + E + + R++ I ++ R Sbjct: 12 FLDALWLEKGLSDNTRDSYRSD---LALFNGWLQERNVDLPGAGREV----ILDHLAWRV 64 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 RS R LSG + F +YL + K+ + L + + LP++L+E Sbjct: 65 ENAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADV----- 119 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 LL ++ I R+ A+L +LY CGLR++E +SLT + + Q LR+ GKG K R+ Sbjct: 120 EALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERL 179 Query: 200 VPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 VP+ +R A E P D+ LF RG + F I+ Sbjct: 180 VPMGEEAIVWVERYMRGARDELLGGKPSDV-------LFPSTRGDQMTRQTFWHRIKHQA 232 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 G+ S + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + Sbjct: 233 TVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----LQ 288 Query: 312 EIYDQTHP 319 E++ + HP Sbjct: 289 EMHAKHHP 296 >gi|206978533|ref|ZP_03239383.1| tyrosine recombinase XerC [Bacillus cereus H3081.97] gi|217961251|ref|YP_002339819.1| site-specific tyrosine recombinase XerC [Bacillus cereus AH187] gi|229140473|ref|ZP_04269028.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST26] gi|206743256|gb|EDZ54713.1| tyrosine recombinase XerC [Bacillus cereus H3081.97] gi|217067516|gb|ACJ81766.1| tyrosine recombinase XerC [Bacillus cereus AH187] gi|228643034|gb|EEK99310.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST26] Length = 299 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 92/311 (29%), Positives = 159/311 (51%), Gaps = 31/311 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q ++ L+IER SK T+ SY+ D F+ F+ E+ I + ++Y ++R +++ Sbjct: 8 QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDITYADVRLYLTTL 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137 +K+ +S+ R +S ++S ++L R+ + N + +L KK S+P+ L ++ Sbjct: 63 HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 118 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 L S + RN A+L L+Y G+R+SE ++L +I T+ + GKG K Sbjct: 119 --EELFEVSDTKTPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 176 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248 R +P + A++ Y + N QL +F +G PL + + Sbjct: 177 RYIPFGSYAQDALITYIE------NGRKQLAKKTEEQSHMVFLNAKGTPLTSRGVRYVLN 230 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 +L + L + + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ + Sbjct: 231 ELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 286 Query: 309 WMMEIYDQTHP 319 + +Y + HP Sbjct: 287 RLRSVYMKHHP 297 >gi|118479053|ref|YP_896204.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis str. Al Hakam] gi|228986974|ref|ZP_04147100.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|118418278|gb|ABK86697.1| tyrosine recombinase XerC subunit [Bacillus thuringiensis str. Al Hakam] gi|228772752|gb|EEM21192.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 302 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 92/311 (29%), Positives = 159/311 (51%), Gaps = 31/311 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q ++ L+IER SK T+ SY+ D F+ F+ E+ I + ++Y ++R +++ Sbjct: 11 QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDITYADVRLYLTTL 65 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137 +K+ +S+ R +S ++S ++L R+ + N + +L KK S+P+ L ++ Sbjct: 66 HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 121 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 L S + RN A+L L+Y G+R+SE ++L +I T+ + GKG K Sbjct: 122 --EELFEVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 179 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248 R +P + A++ Y + N QL +F +G PL + + Sbjct: 180 RYIPFGSYAQDALITYIE------NGRKQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLN 233 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 +L + L + + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ + Sbjct: 234 ELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 289 Query: 309 WMMEIYDQTHP 319 + +Y + HP Sbjct: 290 RLRSVYMKHHP 300 >gi|89098652|ref|ZP_01171534.1| tyrosine recombinase [Bacillus sp. NRRL B-14911] gi|89086614|gb|EAR65733.1| tyrosine recombinase [Bacillus sp. NRRL B-14911] Length = 260 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 82/263 (31%), Positives = 137/263 (52%), Gaps = 11/263 (4%) Query: 59 TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118 IQ++ + Y ++R ++++ QK+ +S R +S ++SF K+L + K+ ++ + Sbjct: 5 AIQSVNDVEYFDVRLYLTRLYEQKLSRKSAARKISSLRSFYKFLAREKLANDNPFSAVSL 64 Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178 K LP E++ N L + + RN A+L LLY G+R+SE ++ Sbjct: 65 PKLEKRLPEFFYEEEL-----NCLFESCETDSPLGKRNKALLELLYATGMRVSECSQISL 119 Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGK 236 ++I ST+ + GKG K R +P + A+ Y +L LF RG Sbjct: 120 KDIDMALSTVLVHGKGQKDRYIPFGSFAQDALELYITEGRKELLTGRESHDRLFVNFRGG 179 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 PL P + + ++ + L + H LRHSFATHLLSNG D+R++Q +LGH LS+TQ Sbjct: 180 PLTPRGIREILNKMIQKSSLEGTIHPHMLRHSFATHLLSNGADMRTVQELLGHAFLSSTQ 239 Query: 297 IYTNVNSKNGGDWMMEIYDQTHP 319 +YT+V + +++ + Y THP Sbjct: 240 VYTHVTN----EYLRKTYLNTHP 258 >gi|288559967|ref|YP_003423453.1| tyrosine recombinase XerC [Methanobrevibacter ruminantium M1] gi|288542677|gb|ADC46561.1| tyrosine recombinase XerC [Methanobrevibacter ruminantium M1] Length = 326 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 81/205 (39%), Positives = 112/205 (54%), Gaps = 11/205 (5%) Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLL--HTSHETKWIDARNSAILYLLYGCGLRISE 172 +++N K++ SLP++L EK+ +L+D V + S K R+ IL LY GLRISE Sbjct: 129 DVQNPKRTKSLPKSLTEKEVKSLIDAVQITDEDSELKKKAKMRDKVILEFLYSTGLRISE 188 Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232 + L ++I D+ T+R++GKG+K RIV + R I Y + LF Sbjct: 189 LVKLQKKDIDFDERTIRVRGKGEKDRIVLFDENTRDLIDNY-----IETQNQKSEYLFIN 243 Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 G+ L P Q I++ G+ T H LRHSFATHLL NG D+R IQ +LGH L Sbjct: 244 KNGRKLTPRYVQMMIKEYAEKAGIKKKVTPHVLRHSFATHLLKNGVDIRVIQQLLGHSSL 303 Query: 293 STTQIYTNVNSKNGGDWMMEIYDQT 317 STTQIYTNV+ D + +YD Sbjct: 304 STTQIYTNVDM----DTIKSVYDHA 324 >gi|138895887|ref|YP_001126340.1| site-specific tyrosine recombinase XerD [Geobacillus thermodenitrificans NG80-2] gi|196248777|ref|ZP_03147477.1| tyrosine recombinase XerD [Geobacillus sp. G11MC16] gi|134267400|gb|ABO67595.1| DNA integration/recombination/invertion protein [Geobacillus thermodenitrificans NG80-2] gi|196211653|gb|EDY06412.1| tyrosine recombinase XerD [Geobacillus sp. G11MC16] Length = 298 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 93/306 (30%), Positives = 155/306 (50%), Gaps = 16/306 (5%) Query: 17 ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 E +++L L +ER L+ T+ SYE D ++++ Y E ++ ++ I F+ Sbjct: 4 ELKDFLHYLTVERNLAHNTIISYERDLKKYV----HYLREVEQLEAWGEVERLHILHFLK 59 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 Q R++ R L+ I+SF ++L + K+ + +++ + +LP+ L+ ++ Sbjct: 60 FLSEQGQSARTIARHLASIRSFHQFLLREKMAAQDPTVHIETPQFERTLPKVLSVEEV-- 117 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 LL R+ A+L +LY G+R+SE + L ++ +R GKG K Sbjct: 118 ---EALLAAPQTNTPFGLRDKAMLEVLYATGMRVSELVQLNLGDVHLTMGFVRCYGKGRK 174 Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQLRRY 253 RIVP+ +A+ Y + P +N + LF G+ L F + +++L + Sbjct: 175 ERIVPIGRMALEALARYLEYGRPQLVNPRKRATEALFLNHYGQRLTRQGFWKILKRLSKE 234 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ T HTLRHSFATHLL NG DLR++Q +LGH +STTQ+YT+V D + Sbjct: 235 AGIEKELTPHTLRHSFATHLLENGADLRAVQELLGHADISTTQMYTHVTKTRLKD----V 290 Query: 314 YDQTHP 319 Y Q HP Sbjct: 291 YKQYHP 296 >gi|65321158|ref|ZP_00394117.1| COG4974: Site-specific recombinase XerD [Bacillus anthracis str. A2012] Length = 302 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 92/311 (29%), Positives = 159/311 (51%), Gaps = 31/311 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q ++ L+IER SK T+ SY+ D F+ F+ E+ I + ++Y ++R +++ Sbjct: 11 QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDITYADVRLYLTTL 65 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137 +K+ +S+ R +S ++S ++L R+ + N + +L KK S+P+ L ++ Sbjct: 66 HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 121 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 L S + RN A+L L+Y G+R+SE ++L +I T+ + GKG K Sbjct: 122 --EELFEVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 179 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248 R +P + A++ Y + N QL +F +G PL + + Sbjct: 180 RYIPFGSYAQDALITYIE------NGRKQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLN 233 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 +L + L + + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ + Sbjct: 234 ELIKKASLTMRISPHILRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 289 Query: 309 WMMEIYDQTHP 319 + +Y + HP Sbjct: 290 RLRSVYMKHHP 300 >gi|119961787|ref|YP_948168.1| tyrosine recombinase XerC [Arthrobacter aurescens TC1] gi|119948646|gb|ABM07557.1| putative tyrosine recombinase XerC [Arthrobacter aurescens TC1] Length = 311 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 92/296 (31%), Positives = 150/296 (50%), Gaps = 11/296 (3%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 LE E S T+++Y D L F +E + Q +RQL +R ++ + + Sbjct: 24 LEGECARSAHTVRAYLSDVESLL---GFAVQEGV--QELRQLELGSLRRWLGAQSEAGMA 78 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 +L R + +SF + + ++ + ++ K+ SLP L ++Q +VD+ L Sbjct: 79 RATLARRAATARSFTGWALREELIETDPAVRLQAPKRDKSLPGVLQQQQVSRMVDD-LNT 137 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + + + RN A++ LLY G+R+ E L ++ D+ T+R+ GKG+K R VP Sbjct: 138 AAADGGPMALRNRAMVELLYATGVRVGELAGLDIDDLDPDRRTVRVLGKGNKERTVPFGV 197 Query: 205 SVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 A+ ++ P + LF G+RG ++P + + +L + LG +T H Sbjct: 198 PAAVAVDDWLRRGRPAVVGATSGPALFLGVRGNRVDPRQIRAVVSELLQALGDTSATGPH 257 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LRHS ATHLL G DLR++Q ILGH L+TTQIYT+V+ D + + Y Q HP Sbjct: 258 ALRHSAATHLLDGGADLRAVQEILGHSSLATTQIYTHVSV----DRLRKSYQQAHP 309 >gi|222097276|ref|YP_002531333.1| site-specific tyrosine recombinase xerc [Bacillus cereus Q1] gi|229197941|ref|ZP_04324656.1| Tyrosine recombinase xerC [Bacillus cereus m1293] gi|221241334|gb|ACM14044.1| site-specific integrase/recombinase [Bacillus cereus Q1] gi|228585520|gb|EEK43623.1| Tyrosine recombinase xerC [Bacillus cereus m1293] gi|324327728|gb|ADY22988.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis serovar finitimus YBT-020] Length = 299 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 92/311 (29%), Positives = 159/311 (51%), Gaps = 31/311 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q ++ L+IER SK T+ SY+ D F+ F+ E+ I + ++Y ++R +++ Sbjct: 8 QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDITYADVRLYLTTL 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137 +K+ +S+ R +S ++S ++L R+ + N + +L KK S+P+ L ++ Sbjct: 63 HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 118 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 L S + RN A+L L+Y G+R+SE ++L +I T+ + GKG K Sbjct: 119 --EELFEVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 176 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248 R +P + A++ Y + N QL +F +G PL + + Sbjct: 177 RYIPFGSYAQDALITYIE------NGRKQLAKKTEEQSHMVFLNAKGTPLTSRGVRYVLN 230 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 +L + L + + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ + Sbjct: 231 ELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 286 Query: 309 WMMEIYDQTHP 319 + +Y + HP Sbjct: 287 RLRSVYMKHHP 297 >gi|304398153|ref|ZP_07380028.1| tyrosine recombinase XerC [Pantoea sp. aB] gi|304354439|gb|EFM18811.1| tyrosine recombinase XerC [Pantoea sp. aB] Length = 301 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 96/311 (30%), Positives = 158/311 (50%), Gaps = 19/311 (6%) Query: 10 VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69 +S LL+ +L+ L++ER LS LT SY RQ +A E K++ + QL Sbjct: 1 MSSTLLEAVDGFLRYLKVERQLSPLTQSSY---ARQLAALVAIADEMKLS--SWAQLEPA 55 Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 ++R+ ++ R + SL LS ++SFL + + + + + + +K+ LP+ + Sbjct: 56 QVRSMAARSRRAGLSASSLALRLSALRSFLDWQVSQGLLSANPAKGVMTPRKARHLPKNI 115 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 + + N LL + + R+ A+L ++YG GLR+SE +++ +++ D + Sbjct: 116 DVDEV-----NQLLEIDLDDP-LAVRDRAMLEVMYGGGLRLSELVNMDCRHVDLDSGEVW 169 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIR 248 + GKG K R VP+ R A+ P Q LF RG ++P Q+ Sbjct: 170 VVGKGSKERRVPI---GRTAVTWIQHWLPLRETFGAQDDALFLSTRGNRISPRNVQKRFA 226 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 + GL H LRHSFATHLL + GDLR++Q +LGH LSTTQIYT+++ ++ Sbjct: 227 EWGIRQGLASHIHPHKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTHLDFQH--- 283 Query: 309 WMMEIYDQTHP 319 + +YD HP Sbjct: 284 -LASVYDAAHP 293 >gi|260593346|ref|ZP_05858804.1| integrase/recombinase XerD [Prevotella veroralis F0319] gi|260534622|gb|EEX17239.1| integrase/recombinase XerD [Prevotella veroralis F0319] Length = 314 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 91/280 (32%), Positives = 146/280 (52%), Gaps = 12/280 (4%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L++E+G S TL +Y D + L +LA E I + ++ ++ F + IG Sbjct: 18 LKLEKGHSANTLDAYMRDLDKLLRYLA---AENIDVLKVK---LEDLEFFAASISDLGIG 71 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 RSL R LSG++ F ++L + + K+ N LP L+ + L + L Sbjct: 72 PRSLARILSGVRQFYRFLVLDGYLEVDPTELLESPKQPNHLPEVLSTAEVDLLEQAIDL- 130 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 +KW RN AI+ +L+ CGLR+SE LT N+ ++ LR+ GKG K R+VP+ P Sbjct: 131 ----SKWEGHRNRAIIEVLFSCGLRVSELTHLTLSNLYIEEQYLRVLGKGSKERLVPISP 186 Query: 205 SVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 + + ++D D+ + +F RG L + I++ G+ + + H Sbjct: 187 RALEELSYWFDDRNKMDIKPGEEDYVFLNRRGHHLTRTMILIMIKRYAVEAGIKKTISPH 246 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 TLRHSFAT LL G DLR+IQ++LGH + TT+IYT++++ Sbjct: 247 TLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTHIDT 286 >gi|49478402|ref|YP_037892.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196042353|ref|ZP_03109624.1| tyrosine recombinase XerC [Bacillus cereus NVH0597-99] gi|218904959|ref|YP_002452793.1| tyrosine recombinase XerC [Bacillus cereus AH820] gi|225865812|ref|YP_002751190.1| tyrosine recombinase XerC [Bacillus cereus 03BB102] gi|228916468|ref|ZP_04080034.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928879|ref|ZP_04091911.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935145|ref|ZP_04097972.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947550|ref|ZP_04109840.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229123345|ref|ZP_04252549.1| Tyrosine recombinase xerC [Bacillus cereus 95/8201] gi|229157407|ref|ZP_04285485.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 4342] gi|254721983|ref|ZP_05183772.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. A1055] gi|301055321|ref|YP_003793532.1| tyrosine recombinase [Bacillus anthracis CI] gi|49329958|gb|AAT60604.1| site-specific integrase/recombinase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196026809|gb|EDX65445.1| tyrosine recombinase XerC [Bacillus cereus NVH0597-99] gi|218540108|gb|ACK92506.1| tyrosine recombinase XerC [Bacillus cereus AH820] gi|225791021|gb|ACO31238.1| tyrosine recombinase XerC [Bacillus cereus 03BB102] gi|228626134|gb|EEK82883.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 4342] gi|228660121|gb|EEL15757.1| Tyrosine recombinase xerC [Bacillus cereus 95/8201] gi|228812070|gb|EEM58401.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824510|gb|EEM70315.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830686|gb|EEM76291.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843047|gb|EEM88129.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|300377490|gb|ADK06394.1| tyrosine recombinase [Bacillus cereus biovar anthracis str. CI] Length = 299 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 92/311 (29%), Positives = 159/311 (51%), Gaps = 31/311 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q ++ L+IER SK T+ SY+ D F+ F+ E+ I + ++Y ++R +++ Sbjct: 8 QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDITYADVRLYLTTL 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137 +K+ +S+ R +S ++S ++L R+ + N + +L KK S+P+ L ++ Sbjct: 63 HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 118 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 L S + RN A+L L+Y G+R+SE ++L +I T+ + GKG K Sbjct: 119 --EELFEVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 176 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248 R +P + A++ Y + N QL +F +G PL + + Sbjct: 177 RYIPFGSYAQDALITYIE------NGRKQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLN 230 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 +L + L + + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ + Sbjct: 231 ELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 286 Query: 309 WMMEIYDQTHP 319 + +Y + HP Sbjct: 287 RLRSVYMKHHP 297 >gi|256822057|ref|YP_003146020.1| tyrosine recombinase XerD [Kangiella koreensis DSM 16069] gi|256795596|gb|ACV26252.1| tyrosine recombinase XerD [Kangiella koreensis DSM 16069] Length = 295 Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 97/294 (32%), Positives = 157/294 (53%), Gaps = 16/294 (5%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 +E+GLS TL SY D + F +L +K +R + +I+ ++++R T++ R Sbjct: 15 MEQGLSDATLSSYRSDLKLFNQWL-----QKQGKDLLRSSPF-DIQQYLAERYTKQYSSR 68 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R LS + F +YL + + + K +P++L+E + VD++L Sbjct: 69 STARFLSSARKFYRYLIQSNQIKVDPTQQIDSPKIQPPVPKSLSEDE----VDSLLSQPD 124 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 ET + R+ A+L LLY GLRI+E +S+ I Q +R+ GKG+K R+VP+ Sbjct: 125 LETA-LGLRDKAMLELLYSSGLRITELISVEVNQIGFQQGVMRVIGKGNKERLVPIGEEA 183 Query: 207 RKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 +AI Y +L N + LF RG+ + F I+ + G+ + HTL Sbjct: 184 LQAISLYIRHGRAELANEKVCDWLFLSTRGQRMTRQTFWHRIKLYAKTAGIRKHLSPHTL 243 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 RH+FATHLL++G DLR++Q +LGH LSTTQIYT+V + + +++ + HP Sbjct: 244 RHAFATHLLNHGADLRTLQMLLGHSDLSTTQIYTHVAKER----LKQLHSEHHP 293 >gi|225351382|ref|ZP_03742405.1| hypothetical protein BIFPSEUDO_02976 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157726|gb|EEG71009.1| hypothetical protein BIFPSEUDO_02976 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 308 Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 82/287 (28%), Positives = 152/287 (52%), Gaps = 16/287 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L+ RGLS+ T ++Y D + L+ L E++ + + +++ ++R ++++ ++ Sbjct: 14 LKANRGLSENTRKAYRGDVEECLLAL-----ERLRCRDLNEVTIEDLRMWMAES-SKNHA 67 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--- 141 S+ R ++ F + + +TT + K ++LP L+E QA L++ V Sbjct: 68 KSSMARKTVAVRGFFAWTHEHGVTTTDPACALMTPKIPDTLPDVLSESQAEQLMERVDED 127 Query: 142 -----LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 + + + I+ R++A+L LLY G+R++E + L +++ T+++ GKG+K Sbjct: 128 GETSQPKERTMKQQAIELRDAAMLELLYATGMRVAELVGLDVPDVVFSNRTVKVTGKGNK 187 Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 R++P +KAI + D P + LF G +GK ++ + +R + + R G Sbjct: 188 QRVMPFGAPAQKAIRRWLDDGRPLLVGEQSAAALFLGRQGKRIDQRMVRRVVHECARDAG 247 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 +P + H LRHS ATH+L G DLR +Q +LGH L TTQ YT+V+ Sbjct: 248 VP-DISPHALRHSAATHMLDGGADLREVQELLGHSSLKTTQRYTHVS 293 >gi|302038654|ref|YP_003798976.1| tyrosine recombinase XerD [Candidatus Nitrospira defluvii] gi|300606718|emb|CBK43051.1| Tyrosine recombinase XerD [Candidatus Nitrospira defluvii] Length = 299 Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 86/286 (30%), Positives = 145/286 (50%), Gaps = 11/286 (3%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + ++ I RGLS+ TL +Y+ D F +L + +R++S + F+ Sbjct: 6 ERYWDHVRIARGLSRNTLLAYQRDVASFQHYL-----RDQQVSDVREMSPPLLAGFLDHL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S R+L+ ++S ++LK+ + + +++R+ ++ LP+ L+ ++ Sbjct: 61 HQSGLASPSRARALAAVRSLFRFLKQEGMIAANPTVSLRSASRARRLPKTLSPEEV---- 116 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL D R+ A++ +LY G+R+SE +SL D + I GKG+K R Sbjct: 117 -TRLLELPPRPLPEDHRDRAMVEVLYAAGVRVSELISLRVDQCNLDVGYIGITGKGEKQR 175 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ +A+ Y P L +F RG PL F + +R G+ Sbjct: 176 VVPIGRPAIEAVQAYLLAARPALLKQRSSRFVFVSRRGTPLTRQAFWKLLRARAHRAGIA 235 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + H LRHSFATHLL G DLRS+Q++LGH ++TTQIYT+V+S Sbjct: 236 RIPSPHMLRHSFATHLLQRGADLRSVQAMLGHADIATTQIYTHVDS 281 >gi|171056822|ref|YP_001789171.1| integrase family protein [Leptothrix cholodnii SP-6] gi|170774267|gb|ACB32406.1| integrase family protein [Leptothrix cholodnii SP-6] Length = 312 Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 90/311 (28%), Positives = 151/311 (48%), Gaps = 21/311 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +LQ+L+++R L+ TL Y L E+++ + +R +R + + Sbjct: 15 FLQHLQVQRRLAPRTLTMYGA---ALLRLEHAAAEQQLALTQVRP---PHVRRWAAMLHG 68 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q +G RS+ L+ + ++L + + + + +R K LP+AL +A+ L D+ Sbjct: 69 QGLGPRSIAIHLAAWRGLYRWLGREGQVSANPVDGLRPPKAGRPLPKALAVDEAVVLADH 128 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-------DQSTLRIQGK 193 H +D R+ A+ LLYGCGLR +E + L D + ++ GK Sbjct: 129 ---HDPATDPLLDLRDHAMTELLYGCGLRAAELIGLDCIAGPDAAGWIDLEGGDAQVLGK 185 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 G RIVP+ P A+ + + + +L LF RG L +R + Q + Sbjct: 186 GSNRRIVPVGPPAVAAVQAWLAVR-HQMARAGELALFVSRRGTRLTDSQLRRRLAQRAQS 244 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 GL H LRHS+A+HLL + GDLR++Q +LGH ++STTQ+YT ++ ++ + I Sbjct: 245 AGLTSHVHPHMLRHSYASHLLQSSGDLRAVQELLGHAQISTTQVYTRLDYQH----LARI 300 Query: 314 YDQTHPSITQK 324 YD HP +K Sbjct: 301 YDAAHPRARRK 311 >gi|30263835|ref|NP_846212.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. Ames] gi|47529259|ref|YP_020608.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. 'Ames Ancestor'] gi|49186681|ref|YP_029933.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. Sterne] gi|165873312|ref|ZP_02217917.1| tyrosine recombinase XerC [Bacillus anthracis str. A0488] gi|167642028|ref|ZP_02400258.1| tyrosine recombinase XerC [Bacillus anthracis str. A0193] gi|170689658|ref|ZP_02880838.1| tyrosine recombinase XerC [Bacillus anthracis str. A0465] gi|170709363|ref|ZP_02899777.1| tyrosine recombinase XerC [Bacillus anthracis str. A0389] gi|177655993|ref|ZP_02937120.1| tyrosine recombinase XerC [Bacillus anthracis str. A0174] gi|229603261|ref|YP_002868069.1| tyrosine recombinase XerC [Bacillus anthracis str. A0248] gi|254683462|ref|ZP_05147322.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. CNEVA-9066] gi|254735869|ref|ZP_05193575.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. Western North America USA6153] gi|254739605|ref|ZP_05197299.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. Kruger B] gi|254751200|ref|ZP_05203239.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. Vollum] gi|254759317|ref|ZP_05211342.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. Australia 94] gi|30258479|gb|AAP27698.1| tyrosine recombinase XerC [Bacillus anthracis str. Ames] gi|47504407|gb|AAT33083.1| tyrosine recombinase XerC [Bacillus anthracis str. 'Ames Ancestor'] gi|49180608|gb|AAT55984.1| site-specific recombinase, phage integrase family [Bacillus anthracis str. Sterne] gi|164710950|gb|EDR16522.1| tyrosine recombinase XerC [Bacillus anthracis str. A0488] gi|167510008|gb|EDR85424.1| tyrosine recombinase XerC [Bacillus anthracis str. A0193] gi|170125737|gb|EDS94650.1| tyrosine recombinase XerC [Bacillus anthracis str. A0389] gi|170666382|gb|EDT17165.1| tyrosine recombinase XerC [Bacillus anthracis str. A0465] gi|172079892|gb|EDT65000.1| tyrosine recombinase XerC [Bacillus anthracis str. A0174] gi|229267669|gb|ACQ49306.1| tyrosine recombinase XerC [Bacillus anthracis str. A0248] Length = 299 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 92/311 (29%), Positives = 159/311 (51%), Gaps = 31/311 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q ++ L+IER SK T+ SY+ D F+ F+ E+ I + ++Y ++R +++ Sbjct: 8 QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDITYADVRLYLTTL 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137 +K+ +S+ R +S ++S ++L R+ + N + +L KK S+P+ L ++ Sbjct: 63 HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 118 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 L S + RN A+L L+Y G+R+SE ++L +I T+ + GKG K Sbjct: 119 --EELFEVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 176 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248 R +P + A++ Y + N QL +F +G PL + + Sbjct: 177 RYIPFGSYAQDALITYIE------NGRKQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLN 230 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 +L + L + + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ + Sbjct: 231 ELIKKASLTMRISPHILRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 286 Query: 309 WMMEIYDQTHP 319 + +Y + HP Sbjct: 287 RLRSVYMKHHP 297 >gi|58584819|ref|YP_198392.1| integrase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419135|gb|AAW71150.1| Integrase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 392 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 89/218 (40%), Positives = 119/218 (54%), Gaps = 11/218 (5%) Query: 113 ILNMRNLKKSNSLPR---ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169 I+N R L N +P E T V + L E WI R AI+ LLYG GLR Sbjct: 180 IINKRTLSIKNWIPVLSIGTTEGNTKTSVKEIKLLDLGEP-WIIKREIAIIVLLYGTGLR 238 Query: 170 ISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229 ISEAL+L +I ++ +L + GKGDK R V +LP V+ I EY CP+ N L Sbjct: 239 ISEALNLKVSDISNE--SLIVTGKGDKQRQVFILPVVKMFIQEYVKACPYLSVNNEAQHL 296 Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289 F G+RGK L ++++RR L LP + H RHSFATHLL D+R IQ +LGH Sbjct: 297 FVGVRGKKLGRTYVANRLQKIRRMLNLPEIVSPHAFRHSFATHLLQENVDIRFIQQLLGH 356 Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327 L TTQ+YT++N ++ + +Y S+ +KDKK Sbjct: 357 SSLETTQVYTHLNYQD----VFNMYKNFQQSL-EKDKK 389 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 68/124 (54%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +NW + L R S TL+SY D + F+ FL+ + E++ + ++ +LS E+R++ S R Sbjct: 8 ENWHEWLRCYRSYSSNTLESYMRDLKDFISFLSAHIGEEVNVGSLEKLSVPELRSWFSFR 67 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + I RS R+LS I++F KY+K + ++ + +LP+AL+ TLV Sbjct: 68 YARGINARSNTRALSVIRNFFKYIKNNYEVNNEAVFSLSRPIQRRTLPKALSISDIKTLV 127 Query: 139 DNVL 142 D L Sbjct: 128 DFFL 131 >gi|332637865|ref|ZP_08416728.1| site-specific recombinase XerD [Weissella cibaria KACC 11862] Length = 303 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 98/304 (32%), Positives = 150/304 (49%), Gaps = 20/304 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L L +ERGLS T SY D F +L +K + Q+ I AF+ + Sbjct: 14 DYLHYLTVERGLSANTRTSYRQDLTHFFTYLI----DKEKSLPLTQVDRFTIMAFLGEME 69 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL--NEKQALTL 137 TQ S+ +S ++ F ++ TT + + KK+ LP L +E +AL Sbjct: 70 TQGKSRNSVIHMVSTLRKFFQFATDSGWTTTDPMTQVDPPKKAQHLPAVLTLSEVEALLA 129 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 V + + RN +L ++Y GLR+SE ++L N+ D ++ GKGDK Sbjct: 130 VPDT-------NTTLGLRNRTMLEVMYATGLRVSELVNLRLDNLHLDLGLIQTIGKGDKE 182 Query: 198 RIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RI+P+ V L+ Y D PF + +F G L + I+Q G Sbjct: 183 RIIPI-GDVATHWLQRYLADGRPFLGRQQDEQVIFLNDHGHQLTRQGVWKLIKQWVIAAG 241 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + HTLRHSFATH+L NG DLR +Q +LGH +STTQIYT++++K + E+Y Sbjct: 242 ITKDVSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISNKR----LTEVYQ 297 Query: 316 QTHP 319 ++HP Sbjct: 298 KSHP 301 >gi|332882567|ref|ZP_08450179.1| putative tyrosine recombinase XerC [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679367|gb|EGJ52352.1| putative tyrosine recombinase XerC [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 332 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 96/302 (31%), Positives = 155/302 (51%), Gaps = 21/302 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L IE S T+++Y+ D R F F+ E++ + + +I+ +I Q + Sbjct: 32 LSIEMKYSIHTVEAYKHDLRAFERFIKSECEKEEEDCPLERADQEDIKKWIISLSNQSMS 91 Query: 85 DRSLKRSLSGIKSFLKYLKKRK-ITT---ESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 RS+ R LS +K++ +LKK K I T E I ++ KK N LP + E ++ Sbjct: 92 FRSINRKLSALKTYYTFLKKTKQIETSPFERGIFLLKTEKK-NKLPFSEAE------IEK 144 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 VL + S ++ + + R+ AI+ LY G+R SE L Q++ +Q ++I GKGDK R + Sbjct: 145 VLSYFSSKSSFDEVRDRAIIETLYATGMRRSELTGLKLQDLDLEQKQIKISGKGDKERYI 204 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 P++P + + EY L N + LF GK + P + R I + Sbjct: 205 PVIPELEATLKEYLRLREEIANKKSEDFLFLVKNGKKIYPTLVYRIINSYFSAVTSKKDV 264 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI---YDQT 317 + H LRHSFA+HLL NG DL +++ +LGH L++TQ+YTN + ++E+ Y + Sbjct: 265 SPHILRHSFASHLLDNGADLNTVKELLGHSSLASTQVYTNTS-------LVELKRQYKKA 317 Query: 318 HP 319 HP Sbjct: 318 HP 319 >gi|229104393|ref|ZP_04235062.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-28] gi|228679091|gb|EEL33299.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-28] Length = 299 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 92/311 (29%), Positives = 159/311 (51%), Gaps = 31/311 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q ++ L+IER SK T+ SY+ D F+ F+ E+ I + ++Y ++R +++ Sbjct: 8 QLFVGYLQIERNYSKYTIASYQNDLEHFVRFM-----EREGISSFLDVTYADVRLYLTTL 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137 +K+ +S+ R +S ++S ++L R+ + N + +L KK S+P+ L ++ Sbjct: 63 HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 118 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 L S + RN A+L L+Y G+R+SE ++L +I T+ + GKG K Sbjct: 119 --EELFEVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 176 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248 R +P + A++ Y + N QL +F +G PL + + Sbjct: 177 RYIPFGSYAQDALITYME------NGRKQLANKTEEQSHMVFLNAKGTPLTSRGVRYVLN 230 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 +L + L + + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ + Sbjct: 231 ELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 286 Query: 309 WMMEIYDQTHP 319 + +Y + HP Sbjct: 287 RLRSVYMKHHP 297 >gi|95929136|ref|ZP_01311880.1| Tyrosine recombinase XerD [Desulfuromonas acetoxidans DSM 684] gi|95134634|gb|EAT16289.1| Tyrosine recombinase XerD [Desulfuromonas acetoxidans DSM 684] Length = 298 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 93/297 (31%), Positives = 149/297 (50%), Gaps = 16/297 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L IERGLS TL+SY D ++++ FL E+ I + + ++ F ++ + Q +G Sbjct: 14 LSIERGLSANTLESYARDLQRYIGFL-----EERHINDVIAIRQNDVLDFFTELKEQGMG 68 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 RS R L+ ++ F Y + + + K +LP L+ + LL Sbjct: 69 VRSRARLLAALRGFHHYAVDEYQLANNPVARLTTPKMLQTLPDTLSPADV-----DALLD 123 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + + + + R+ A+L LLY G+R+SE + L ++ + LR+ GKG K RI+P+ Sbjct: 124 INDDGQALTRRDIAMLELLYATGMRVSELVGLKLDDLHLNSGYLRVFGKGSKQRIIPIGE 183 Query: 205 SVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 + +Y D N+ +F GK L F + I++ G+ + T Sbjct: 184 IAIDTLRDYLARVRPELDRQRNLSPCVFLNRSGKGLTRQGFWKMIKRRALEAGITKNVTP 243 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HTLRHSFATHLL NG DLR +Q +LGH +STTQIYT+V ++ + ++ HP Sbjct: 244 HTLRHSFATHLLENGADLRVVQMLLGHVDISTTQIYTHVTREH----VRHVHQSFHP 296 >gi|299538357|ref|ZP_07051640.1| tyrosine recombinase xerD [Lysinibacillus fusiformis ZC1] gi|298725944|gb|EFI66536.1| tyrosine recombinase xerD [Lysinibacillus fusiformis ZC1] Length = 300 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 103/307 (33%), Positives = 159/307 (51%), Gaps = 23/307 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++++ +++ER LS TL SY D ++ FL +E + + T I + + Sbjct: 9 EDYIHFIQVERQLSVNTLASYRRDLESYVHFL----KEAEGMSDFSVVERTTILRHLEQL 64 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYL--KKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 R Q R++ R +S I+SF ++L +KR T + L M +++ LP L+ ++ Sbjct: 65 RAQGKTSRTVARHISSIRSFHQFLLREKRAETDPTVHLEMPTIEQK--LPNILSIEEI-- 120 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 LL +++K R+ A+L LLYG G+RISE ++L +I +R+ GKG K Sbjct: 121 ---EALLTAPNKSKPQGIRDLAMLELLYGSGMRISELIALDLADIHLTMGFVRVFGKGGK 177 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRR 252 RI+PL S AI Y L L + P F RGK L + +++ Sbjct: 178 ERIIPLGKSALSAINAY--LNGARGQLQGKYPKTDAFFINQRGKRLTRQGCWKLMKEHAL 235 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 G+ T HTLRHSFATHL+ NG DLR++Q +LGH +STTQIYT+++ + E Sbjct: 236 KAGIQHELTPHTLRHSFATHLVENGADLRAVQEMLGHADISTTQIYTHISKTR----LSE 291 Query: 313 IYDQTHP 319 +Y Q HP Sbjct: 292 VYKQFHP 298 >gi|218289606|ref|ZP_03493826.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius LAA1] gi|218240256|gb|EED07439.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius LAA1] Length = 294 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 93/304 (30%), Positives = 150/304 (49%), Gaps = 16/304 (5%) Query: 17 ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 E + +L +L +ERGLS+ T SY D F +LA E++ T+R T + ++S Sbjct: 4 EIRTFLDHLRLERGLSENTATSYARDLADFSQYLA--CEQR----TMRDADRTVVLRYLS 57 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + + + ++ R +S ++SF +YL + I N+ LPR ++E+ Sbjct: 58 DLKRRGMKSTTIARRMSALRSFFRYLLREGILQADPTANIEVAAPDEHLPRVVSEEDVER 117 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L+ V + R+ A+L LY G+R+SE L+L+ +++ +R+ GKG K Sbjct: 118 LIGAV-----RRPDAMGLRDRAMLETLYATGVRVSELLALSLEDVELAAGFIRVFGKGKK 172 Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 R+VPL + A+ Y P + + +F G+ + F ++ R G Sbjct: 173 ERVVPLGEIAQDALGLYLRYGRPLLVRDRGESAVFLNRLGRRMTRQGFWNILKGYARQAG 232 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + T HTLRHSFATHLL G DLR +Q +LGH +STT+ YT+V + E+Y Sbjct: 233 VSAEVTPHTLRHSFATHLLEGGADLRVVQELLGHADISTTERYTHVTPHR----LREVYR 288 Query: 316 QTHP 319 HP Sbjct: 289 NAHP 292 >gi|229031461|ref|ZP_04187461.1| Tyrosine recombinase xerC [Bacillus cereus AH1271] gi|228729750|gb|EEL80730.1| Tyrosine recombinase xerC [Bacillus cereus AH1271] Length = 299 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 92/311 (29%), Positives = 159/311 (51%), Gaps = 31/311 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q ++ L+IER SK T+ SY+ D F+ F+ E+ I + ++Y ++R +++ Sbjct: 8 QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYLTTL 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137 +K+ +S+ R +S ++S ++L R+ + N + +L KK S+P+ L ++ Sbjct: 63 HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 118 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 L S + RN A+L L+Y G+R+SE ++L +I T+ + GKG K Sbjct: 119 --EELFEVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 176 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248 R +P + A++ Y + N QL +F +G PL + + Sbjct: 177 RYIPFGSYAQDALITYIE------NGRKQLAHKTEEHSHMVFLNAKGTPLTSRGVRYVLN 230 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 +L + L + + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ + Sbjct: 231 ELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 286 Query: 309 WMMEIYDQTHP 319 + +Y + HP Sbjct: 287 RLRSVYMKHHP 297 >gi|328948451|ref|YP_004365788.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489] gi|328448775|gb|AEB14491.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489] Length = 297 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 92/274 (33%), Positives = 153/274 (55%), Gaps = 18/274 (6%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTE--EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 KLT ++Y ++FL +L EK+T+Q++ L YT AF R+T + +L Sbjct: 21 GKLTAETYLICVQEFLDYLEKNETPLEKVTVQSL--LYYT---AF---RKTSGRKEITLA 72 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 + LS ++ F +L ++KI E+ + K S +LP+ L +Q +L+ ++ + Sbjct: 73 KDLSALRIFGSFLVRKKIWIENFAHEIGKPKVSRALPKVLEVEQVDSLLASIDV-----K 127 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 K + R+ A+ ++Y CGLRISEA SL N+ D++ + ++GKG K R+VP Sbjct: 128 KPLGIRDRALYEVIYSCGLRISEACSLLIANVHFDENLILVRGKGSKERLVPFGEDAAFW 187 Query: 210 ILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 + ++ +++ P + I +F +G P++ + + + + G+ HTLRHS Sbjct: 188 LKKWIFEIRPGFVGSRIIPEVFVNSKGNPISRKGIWKNFKAMGKKTGI--EAKVHTLRHS 245 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 FATHLLS G DLRS+Q +LGH LSTTQIYT+++ Sbjct: 246 FATHLLSGGADLRSVQELLGHSDLSTTQIYTHID 279 >gi|258511717|ref|YP_003185151.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478443|gb|ACV58762.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 294 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 91/302 (30%), Positives = 149/302 (49%), Gaps = 16/302 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L +L +ERGLS+ T SY D F +LA E++ T+R T + ++S Sbjct: 6 RTFLDHLRLERGLSENTATSYARDLADFSQYLA--REQR----TMRDADRTAVLRYLSDL 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + + ++ R +S ++SF +YL + + N+ LPR ++E+ L+ Sbjct: 60 KRRGMKSTTIARRMSALRSFFRYLLREGVLQADPTANIEVAAPDEHLPRVVSEEDVERLI 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 V + R+ A+L LY G+R+SE L+L+ +++ +R+ GKG K R Sbjct: 120 GAV-----RRPDAMGLRDRAMLETLYATGVRVSELLALSLEDVELAAGFIRVFGKGKKER 174 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL + A+ Y P + + +F G+ + F ++ R G+ Sbjct: 175 VVPLGEIAQDALGLYLRYGRPLLVRDRGESAVFLNRLGRRMTRQGFWNILKGYARQAGVS 234 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T HTLRHSFATHLL G DLR +Q +LGH +STT+ YT+V + E+Y Sbjct: 235 AEVTPHTLRHSFATHLLEGGADLRVVQELLGHADISTTERYTHVTPHR----LREVYRNA 290 Query: 318 HP 319 HP Sbjct: 291 HP 292 >gi|34497827|ref|NP_902042.1| integrase/recombinase XerC [Chromobacterium violaceum ATCC 12472] gi|81655548|sp|Q7NVH1|XERC_CHRVO RecName: Full=Tyrosine recombinase xerC gi|34103683|gb|AAQ60044.1| integrase/recombinase XerC [Chromobacterium violaceum ATCC 12472] Length = 299 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 88/299 (29%), Positives = 145/299 (48%), Gaps = 20/299 (6%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 G S TL +Y D E + ++ R + E+R ++K Q + RSL Sbjct: 16 GRSPHTLAAYRADIELL--------ENMMQAKSARDATAAELRKALAKLHAQGLSSRSLA 67 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 R LS + F +L++ ++ + K+ LP+AL L+D + + Sbjct: 68 RRLSSWRQFYHWLQRNGEREDNPAAGLYAPKRDKLLPKALPVDGTAALLDRIEGESE--- 124 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 +DAR+ AI L+Y CGLR+SE ++L ++ S LRI+GKG K R+VP+ Sbjct: 125 --LDARDRAIFELVYSCGLRLSETVALNLDDVDFSDSLLRIRGKGGKERLVPIGAEAMLR 182 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 + + ++ + LF G G L ++ +R G H LRHSF Sbjct: 183 LRTWLGERSAGMD---EPALFLGRHGHRLGGRQVEKRLRDWAIKTGAGQHVHPHMLRHSF 239 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328 A+H+L + GDLR++Q +LGH LS+TQIYT ++ ++ + ++YD HP ++ K + Sbjct: 240 ASHMLQSSGDLRAVQELLGHANLSSTQIYTALDFQH----LAKVYDGAHPRARKRGKPD 294 >gi|308235900|ref|ZP_07666637.1| tyrosine recombinase XerD [Gardnerella vaginalis ATCC 14018] gi|311115004|ref|YP_003986225.1| integrase/recombinase [Gardnerella vaginalis ATCC 14019] gi|310946498|gb|ADP39202.1| integrase/recombinase [Gardnerella vaginalis ATCC 14019] Length = 335 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 97/327 (29%), Positives = 160/327 (48%), Gaps = 34/327 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTE-IRAFIS 76 Q +L ++ +ERGLS T++SYE D ++ +L KI + I QL E +RA S Sbjct: 14 QQFLNHISVERGLSPKTVESYESDLTKYTNWL--REARKINDVNEITQLDIEEYVRAMSS 71 Query: 77 KR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 + +Q +G R++ R ++ I + K++ ++ K++ LP L+ + Sbjct: 72 QAMSSQNLGPRTIARRIASIHEWNKFMLSNAQIASDPSAEVKAPKQAEHLPDVLSISEVE 131 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 ++D S T + R+ A++ LY G R+SEA+ L ++I +S +R+ GKG Sbjct: 132 RVIDAAGGFGS--TDAVSLRDRALVEFLYATGARVSEAVGLKFEDIDLTESVVRLSGKGQ 189 Query: 196 KIRIVPLLPSVRKAILEY-----------YDLCPFDLNLNIQLPL------------FRG 232 K R+VP+ +A+ +Y P ++ PL F Sbjct: 190 KQRLVPIGKCAVRALRDYLANARPILASRAQKSPATAKSRLKSPLNSSSKSANTHVIFLN 249 Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 RGK L+ I + + + HTLRHSFATHL+S G D+R++Q +LGH + Sbjct: 250 KRGKSLSRQSAWEAISRAGKMAKIGKELHPHTLRHSFATHLISGGADVRTVQELLGHASV 309 Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHP 319 +TTQIYT+++ D +ME Y +HP Sbjct: 310 TTTQIYTHISP----DALMEAYVMSHP 332 >gi|194014676|ref|ZP_03053293.1| tyrosine recombinase XerC [Bacillus pumilus ATCC 7061] gi|194013702|gb|EDW23267.1| tyrosine recombinase XerC [Bacillus pumilus ATCC 7061] Length = 305 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 90/303 (29%), Positives = 151/303 (49%), Gaps = 18/303 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +++ L+IE+ S LT+ Y +F+ F+ I ++SY + R ++++ Sbjct: 11 FIEYLQIEKNYSALTISGYTEAIEEFVRFMNVQG-----IDGFEEVSYQDTRIYLTEAYE 65 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + R++ + +S ++SF K+L + ++ E+ L + K+ +P L E++ Sbjct: 66 KGLTRRTISKKVSALRSFYKFLLREQLVKENPFLLVSLPKQDKRIPSFLYEEEL-----K 120 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 L S + + RN AIL LLY G+R+SE SL ++ T+ + GKG K R V Sbjct: 121 ELFTVSDVSTPLGQRNQAILELLYATGMRVSELCSLKESDLDLSMDTVLVHGKGSKQRYV 180 Query: 201 PLLPSVRKAILEYYDLCPFDL----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 P +A++ Y + L N +F RG PL + + +L + Sbjct: 181 PFGSYAHEALITYLEDGRLKLKAKGNDRADAYVFLNQRGAPLTDRGVRFILTELMKKASG 240 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 L H LRH+FATHLL+ G DLRS+Q +LGH LS+TQ+YT+V+ D + + Y Sbjct: 241 TLHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTHVSK----DSLRKTYMS 296 Query: 317 THP 319 HP Sbjct: 297 HHP 299 >gi|73662564|ref|YP_301345.1| site-specific recombinase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|82582339|sp|Q49XU5|XERD_STAS1 RecName: Full=Tyrosine recombinase xerD gi|72495079|dbj|BAE18400.1| site-specific recombinase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 295 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 94/302 (31%), Positives = 156/302 (51%), Gaps = 15/302 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ +++E+GLS T+ +Y D +++ FL E I I + I+ + Sbjct: 6 EEYLKFIQLEKGLSSNTIGAYRRDLKKYNTFL-----ELQKISHIDFIDRASIQQCLGYL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 +SL R +S I+SF ++ + K + + + K LP L + L Sbjct: 61 HDNGASAKSLARFISTIRSFHQFALREKYAAKDPTVLIETPKYDRKLPDVLEINEVL--- 117 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL T + K R+ +L LLY G+R+SE + + +++ +++ GKG+K R Sbjct: 118 --ALLETPNLAKINGYRDRTMLELLYATGMRVSELIQIELEDVNLIMGFVKVFGKGNKER 175 Query: 199 IVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 IVPL +V + + Y + + P L + LF + GKPL+ + I+Q + Sbjct: 176 IVPLGDTVIEYLKTYIETIRPQLLKKTVTNTLFLNMHGKPLSRQAIWKMIKQNAIKANIT 235 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 S T HTLRHSFATHLL NG DLR++Q +LGH +STTQ+YT+V+ + ++Y++ Sbjct: 236 KSLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYNEF 291 Query: 318 HP 319 HP Sbjct: 292 HP 293 >gi|296122593|ref|YP_003630371.1| tyrosine recombinase XerC [Planctomyces limnophilus DSM 3776] gi|296014933|gb|ADG68172.1| tyrosine recombinase XerC [Planctomyces limnophilus DSM 3776] Length = 302 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 95/308 (30%), Positives = 153/308 (49%), Gaps = 16/308 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ L+IER S+LTL+SY D F + TE I QL +E+R +++ Sbjct: 8 FLRYLQIERNASELTLKSYAED---FGSLHDYLTERVGHITEPGQLGISELRGYVAYLNE 64 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 ++ R L+ ++SF ++ ++ ++ + +R + LP+ L +Q + L++ Sbjct: 65 CGYAKTTIARRLASLRSFFRFCQREQLVEGNPAKALRTPRVGRKLPKFLTTEQIVKLLE- 123 Query: 141 VLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + +D R+ AIL Y GLR++E + L + D L + GKG K RI Sbjct: 124 -----APPANEVDGLRDRAILETFYSAGLRVAELVGLNLDDWDQDAQILHVFGKGKKERI 178 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 PL KA+ ++ + + QL LF G L R + + + GL Sbjct: 179 APLGKHATKALEKWVAVRKPEEAAPPQLKNALFLNRFGTRLTTRSVGRMLEKYIQLTGLD 238 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + HTLRH+FATHLL G DLRS+Q +LGH L+TTQIYT+V+++ + + Y Q Sbjct: 239 QLISPHTLRHTFATHLLDGGADLRSVQEMLGHKSLTTTQIYTHVSTQR----LKDTYQQA 294 Query: 318 HPSITQKD 325 HP +D Sbjct: 295 HPHAKVQD 302 >gi|152979627|ref|YP_001345256.1| site-specific tyrosine recombinase XerC [Actinobacillus succinogenes 130Z] gi|171704362|sp|A6VQS4|XERC_ACTSZ RecName: Full=Tyrosine recombinase xerC gi|150841350|gb|ABR75321.1| tyrosine recombinase XerC [Actinobacillus succinogenes 130Z] Length = 295 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 101/311 (32%), Positives = 161/311 (51%), Gaps = 23/311 (7%) Query: 19 QNWLQN----LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 QN LQ L IER LS TL +Y RQ T+ I++ +Q++ + +R Sbjct: 2 QNALQKYYDFLRIERRLSPYTLTNYR---RQLSAVTELLTQN--GIRSWQQVTPSVVRFI 56 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 +++ R + ++SL LS ++ FL YL ++ + + K+ LP+ ++++Q Sbjct: 57 LAESRKAGLHEKSLALRLSALRQFLAYLVVQEELKVNPATGISAPKQGKYLPKNIDQEQI 116 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 L+DN S+E ID R+ A+L L+Y GLR+SE L ++ +R+ GKG Sbjct: 117 GKLLDN----RSNEP--IDIRDRAMLELMYSSGLRLSELHGLDLNHVNLQSREVRVLGKG 170 Query: 195 DKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 K RI+P+ A+L++ + F+ N LF +G L P Q+ + Sbjct: 171 SKERILPVGHQALDAVLDWLQVRLRFNPKDN---ALFVSSQGGRLTPRAIQKRMEIWGVK 227 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 GL H LRHSFATH+L DLR++Q +LGH L+TTQIYT+++ K+ + ++ Sbjct: 228 QGLSTHLNPHKLRHSFATHMLEASADLRAVQELLGHSNLATTQIYTHLDFKH----LTDV 283 Query: 314 YDQTHPSITQK 324 YDQ HP +K Sbjct: 284 YDQAHPRAKRK 294 >gi|332994945|gb|AEF05000.1| tyrosine recombinase [Alteromonas sp. SN2] Length = 307 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 93/321 (28%), Positives = 156/321 (48%), Gaps = 44/321 (13%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L +L++ERGLS LT+ +Y I L Y +T ++++ ++ Sbjct: 16 EKFLLHLQVERGLSPLTISNYRRQLTSIAITLGLYEWSGMTP--------SDVKRVMAAA 67 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + RS+ LS +++F +YL + + + ++ K+ LP+ L+ + L+ Sbjct: 68 KMDGHKPRSIALRLSALRTFCQYLIDNEQLFSNPVEGIQAPKQGKPLPKQLSVDEMQQLL 127 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDK 196 N + + I R+ A+ LLYGCGLR+SE LT N+ D T+++ GKG K Sbjct: 128 ANEQAASGDTDEGIICRDVAMFELLYGCGLRLSE---LTGLNLSDYPKDGTIKVTGKGSK 184 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF--QRYIR------ 248 RI+PL +KA+ + + P P P +F +R R Sbjct: 185 QRILPLGRQAQKALHAWLKVRP--------------AYASPYEPAIFVSKRKTRISNRQV 230 Query: 249 -----QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 Q+ L + H LRHSFATH+L + GDLR++Q +LGH LSTTQ+YT+++ Sbjct: 231 ANRLNQMAELQSLSQKVSPHKLRHSFATHVLESSGDLRAVQELLGHANLSTTQVYTHLDF 290 Query: 304 KNGGDWMMEIYDQTHPSITQK 324 ++ + ++YD HP +K Sbjct: 291 QH----LAKVYDAAHPRAHKK 307 >gi|319778943|ref|YP_004129856.1| Tyrosine recombinase XerC [Taylorella equigenitalis MCE9] gi|317108967|gb|ADU91713.1| Tyrosine recombinase XerC [Taylorella equigenitalis MCE9] Length = 315 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 100/328 (30%), Positives = 169/328 (51%), Gaps = 43/328 (13%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + WLQ+L E+ S T+ +Y+ D + + + E+ ++ +L+ ++R I+ Sbjct: 6 EQWLQSLVTEKNSSPHTVAAYKRDLQHLI---DIFPEKDLS-----KLNNMDVRQAIATL 57 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 ++ RSL R LS ++F K+ + + L ++ K + LP+AL +A L+ Sbjct: 58 HSRDFNPRSLTRILSSWRNFYKWYSLKYELDINPTLGIKAPKVARPLPKALTADEAKLLL 117 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL----------TPQNIMD-DQST 187 D V L T + + AR+ A+ LLY GLR+SE ++L + +D + Sbjct: 118 D-VGLQTDDNSA-VHARDQAMFELLYSSGLRLSELVNLDIEYHKSQDHVSKGWLDINNHE 175 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----------PLFRGIRGK 236 L + GKG+K RIVPL +AIL + LN I+L LF G +GK Sbjct: 176 LTVIGKGNKPRIVPLGEKAEEAILHW-------LNRRIELEGPKTSASDKCALFLGAQGK 228 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 ++ V Q +++L +P + H LRHSFA+H+L + DLR++Q +LGH ++STTQ Sbjct: 229 RISTRVVQLQLKKLALKTNIPSNIHPHVLRHSFASHILQSSQDLRAVQDLLGHSKISTTQ 288 Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSITQK 324 +YT ++ ++ + E YD+ HP +K Sbjct: 289 LYTRLDFQH----LSEAYDKAHPRAKKK 312 >gi|213964199|ref|ZP_03392435.1| tyrosine recombinase XerC [Capnocytophaga sputigena Capno] gi|213953166|gb|EEB64512.1| tyrosine recombinase XerC [Capnocytophaga sputigena Capno] Length = 308 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 92/308 (29%), Positives = 157/308 (50%), Gaps = 15/308 (4%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L IE S T+++Y+ D R F F+ E+K + + +I+ +I + Q++ Sbjct: 10 LSIEMKYSIHTVEAYKHDLRAFEKFIKSEYEDKEEECPLERADQEDIKKWIIQLSQQEMS 69 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITT----ESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 RS+ R LS +K++ +LKK K E I ++ +K LP + E ++ Sbjct: 70 FRSINRKLSALKTYYTFLKKTKQIEVSPFEKGIFLLKT-EKRQKLPFSEAE------IEK 122 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 VL + S ++ + + R+ A++ +LY G+R SE +L ++ Q L++ GKGDK R + Sbjct: 123 VLSYFSSKSSFDEVRDRAVIEMLYATGIRRSELANLRLSDVDLAQKQLKVSGKGDKERYI 182 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 P++P + + + EY L N Q LF GK L + R I + Sbjct: 183 PIIPELEETLKEYLKLREEVANEKSQNYLFLVKNGKKLYSTLVYRIINSYFSAVTPKKDV 242 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 + H LRHSFA+HLL NG DL +++ +LGH L++TQ+YTN + + + Y + HP Sbjct: 243 SPHVLRHSFASHLLDNGADLNTVKELLGHSSLASTQVYTNTSLAE----LKKQYKKAHPR 298 Query: 321 ITQKDKKN 328 +K++ + Sbjct: 299 ADRKEEDD 306 >gi|42782923|ref|NP_980170.1| site-specific tyrosine recombinase XerC [Bacillus cereus ATCC 10987] gi|42738850|gb|AAS42778.1| site-specific recombinase, phage integrase family [Bacillus cereus ATCC 10987] Length = 299 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 92/311 (29%), Positives = 159/311 (51%), Gaps = 31/311 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q ++ L+IER SK T+ SY+ D F+ F+ E+ I + ++Y ++R +++ Sbjct: 8 QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDITYADVRLYLTTL 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137 +K+ +S+ R +S ++S ++L R+ + N + +L KK S+P+ L ++ Sbjct: 63 HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 118 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 L S + RN A+L L+Y G+R+SE ++L +I T+ + GKG K Sbjct: 119 --EELFKVSDTGTPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 176 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248 R +P + A++ Y + N QL +F +G PL + + Sbjct: 177 RYIPFGSYAQDALITYIE------NGRKQLAKKTEEQSHMVFLNAKGTPLTSRGVRYVLN 230 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 +L + L + + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ + Sbjct: 231 ELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 286 Query: 309 WMMEIYDQTHP 319 + +Y + HP Sbjct: 287 RLRSVYMKHHP 297 >gi|71736133|ref|YP_273616.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556686|gb|AAZ35897.1| tyrosine recombinase XerD [Pseudomonas syringae pv. phaseolicola 1448A] Length = 298 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 100/308 (32%), Positives = 150/308 (48%), Gaps = 32/308 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKRR 79 +L L +E+GLS T SY D +F + E + + R++ I ++ R Sbjct: 12 FLDALWLEKGLSDNTRDSYRSD---LALFNGWLQERNADLPSAGREV----ILDHLAWRV 64 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 RS R LSG + F +YL + K+ + L + + LP++L+E Sbjct: 65 ENAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADV----- 119 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 LL ++ I R+ A+L +LY CGLR++E +SLT + + Q LR+ GKG K R+ Sbjct: 120 EALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERL 179 Query: 200 VPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 VP+ +R A E P D+ LF RG + F I+ Sbjct: 180 VPMGEEAIVWVERYLRGARDELLGGKPSDV-------LFPSTRGDQMTRQTFWHRIKHQA 232 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 G+ S + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + Sbjct: 233 TVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----LQ 288 Query: 312 EIYDQTHP 319 E++ + HP Sbjct: 289 ELHAKHHP 296 >gi|66044534|ref|YP_234375.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. syringae B728a] gi|63255241|gb|AAY36337.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] Length = 298 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 100/308 (32%), Positives = 149/308 (48%), Gaps = 32/308 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISKRR 79 +L L +E+GLS T +Y D +F + E + I R++ I ++ R Sbjct: 12 FLDALWLEKGLSDNTRDAYRSD---LALFNGWLQERNVDLISAGREV----ILDHLAWRV 64 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 RS R LSG + F +YL + K+ L + + LP++L+E Sbjct: 65 DNAYKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLPKSLSEADV----- 119 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 LL ++ I R+ A+L +LY CGLR++E +SLT + + Q LR+ GKG K R+ Sbjct: 120 EALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERL 179 Query: 200 VPLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 VP+ +R A E P D+ LF RG + F I+ Sbjct: 180 VPMGEESIVWVERYLRGARDELLGGKPSDV-------LFPSTRGDQMTRQTFWHRIKHQA 232 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 G+ S + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + Sbjct: 233 TVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR----LQ 288 Query: 312 EIYDQTHP 319 E++ + HP Sbjct: 289 EMHARHHP 296 >gi|320323174|gb|EFW79263.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. glycinea str. B076] gi|320329555|gb|EFW85544.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. glycinea str. race 4] Length = 298 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 98/307 (31%), Positives = 148/307 (48%), Gaps = 30/307 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L +E+GLS T SY D +F + E + + + I ++ R Sbjct: 12 FLDALWLEKGLSDNTRDSYRSD---LALFNGWLQERNVDLPSA---GREVILDHLAWRVE 65 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 RS R LSG + F +YL + K+ + L + + LP++L+E Sbjct: 66 NAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADV-----E 120 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LL ++ I R+ A+L +LY CGLR++E +SLT + + Q LR+ GKG K R+V Sbjct: 121 ALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLV 180 Query: 201 PLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 P+ +R A E P D+ LF RG + F I+ Sbjct: 181 PMGEEAIVWVERYLRGARDELLGGKPSDV-------LFPSTRGDQMTRQTFWHRIKHQAT 233 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 G+ S + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT++ + E Sbjct: 234 VAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHLARAR----LQE 289 Query: 313 IYDQTHP 319 ++ + HP Sbjct: 290 LHAKHHP 296 >gi|292491052|ref|YP_003526491.1| tyrosine recombinase XerD [Nitrosococcus halophilus Nc4] gi|291579647|gb|ADE14104.1| tyrosine recombinase XerD [Nitrosococcus halophilus Nc4] Length = 306 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 95/301 (31%), Positives = 158/301 (52%), Gaps = 18/301 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L +E GL++ TL +Y D F +L Y + + ++ R+ ++ A+++ R Sbjct: 20 FLDALWLEEGLAENTLAAYRRDLEGFSRWL--YPQGRTLVEAQRE----DLLAYLAHRLE 73 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS RS+S ++ F +YL + K+ + + LP +L+E++ L+ Sbjct: 74 RSHKARSAARSVSSLRRFYRYLVREKVRDSDPSDRVEAPRLGRPLPESLSEEEVEALLAA 133 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 ++ + + R+ A+L LY GLR+SE + LT + Q +R+ GKG+K R+V Sbjct: 134 PEVNCN-----LGLRDRAMLETLYATGLRVSELVHLTLPQLNLRQGVVRLSGKGNKERLV 188 Query: 201 PLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 PL V + LE Y + P + + LF RG + F I++ R G+ Sbjct: 189 PL-GEVALSWLECYSREARPGLIKAQMSEILFLTRRGGAMTRQAFWYLIKRYARQAGVRK 247 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + +++ Q H Sbjct: 248 ALSPHTLRHAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVARAR----LQQLHQQHH 303 Query: 319 P 319 P Sbjct: 304 P 304 >gi|196232913|ref|ZP_03131763.1| integrase family protein [Chthoniobacter flavus Ellin428] gi|196223112|gb|EDY17632.1| integrase family protein [Chthoniobacter flavus Ellin428] Length = 298 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 93/302 (30%), Positives = 151/302 (50%), Gaps = 19/302 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++ LE+ER S TL +Y +F + + ++L+ R ++ + Sbjct: 12 DFFTFLEVERNASPRTLINYRHALAEF--------RQVPNLPAWKELTADHFRRYLFECS 63 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + I +++ + +++F K+L +R E+ + ++ K LP L KQ L+ Sbjct: 64 KRGIARPTIRLHFAALRTFYKFLTERHGLKENPLKEVQLPKLEKKLPLVLTTKQIDELLS 123 Query: 140 NVLL--HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 L ++ W+ AR++AIL L Y GLR++E ++L N+ ++R+ GKG K Sbjct: 124 APLRIEKSAKAPVWMPARDAAILELFYSSGLRLAELVALDVANVDIYSESVRVLGKGRKE 183 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 R+VP+ AI +Y + N++ PLF + L IR+ + +P Sbjct: 184 RVVPVGAPALTAIQKYRQ----EANVHAG-PLFLSKVRRRLTAANVWLVIRRYLPHTSIP 238 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 L + H LRHSFATHLL G DLRS+QS+LGH LSTTQIYT+V + + YD+ Sbjct: 239 LKVSPHKLRHSFATHLLDAGADLRSVQSLLGHASLSTTQIYTHVTIER----LKTAYDEA 294 Query: 318 HP 319 HP Sbjct: 295 HP 296 >gi|126640131|ref|YP_001083115.1| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC 17978] gi|126386015|gb|ABO10513.1| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC 17978] gi|322506426|gb|ADX01880.1| Site-specific tyrosine recombinase [Acinetobacter baumannii 1656-2] gi|323517823|gb|ADX92204.1| site-specific tyrosine recombinase [Acinetobacter baumannii TCDC-AB0715] gi|323519204|gb|ADX93585.1| site-specific tyrosine recombinase [Acinetobacter baumannii TCDC-AB0715] Length = 310 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 83/267 (31%), Positives = 141/267 (52%), Gaps = 17/267 (6%) Query: 62 TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121 + ++ ++IR FI+ R +G +LK+++S I++F YL K K+ + +++ K Sbjct: 42 ALEEIEASDIRTFIAYRAQNGVGVSTLKKNISAIRTFFHYLTKEKLINFNPAEDIKIKKS 101 Query: 122 SNSLPRALNEKQALTLVDNVLLHTSH------ETKWIDARNSAILYLLYGCGLRISEALS 175 S LP+ +T+++ VL + + I R+ A++ + Y CGLR+ E S Sbjct: 102 SKVLPKF----HEVTVINEVLDSNKNLEFERPSSTVIFKRDLALIEIAYSCGLRLEEIHS 157 Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRG 232 L +N+ + +R+ GKG+K RI+PL +A LE+ L +N + +F Sbjct: 158 LQIENVEVKRKQVRVTGKGNKTRIIPLGSKAIEAYLEWLPLREEIMNKDTNQKHNYVFVT 217 Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 G L+ + I+ + G P+ + H LRHSFATHL++N +R IQ +LGH L Sbjct: 218 TTGAQLSRVQINKRIKNAFKLAGYPIQSNPHMLRHSFATHLINNSVGIREIQEMLGHSNL 277 Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHP 319 +TTQIYT+++ + M +Y THP Sbjct: 278 NTTQIYTDLDHTS----MTNVYMDTHP 300 >gi|170017324|ref|YP_001728243.1| site-specific recombinase XerD [Leuconostoc citreum KM20] gi|169804181|gb|ACA82799.1| Site-specific recombinase XerD [Leuconostoc citreum KM20] Length = 304 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 88/279 (31%), Positives = 139/279 (49%), Gaps = 10/279 (3%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L+ ER S LTL++Y D +F+ FL E QT + + ++R +++ + + Sbjct: 16 LQSERQYSALTLKAYLSDIDEFVAFL----ERNGGFQTFKTVQTLDVRVYLNDLYERHLA 71 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S+ R +S ++ F ++L T++ N+ K N LP E + L + + + Sbjct: 72 RTSIARKISSLRMFYQFLIANHFATDNPFENVALRKHQNHLPEFFYETEMQVLFE--IAY 129 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + W RN+A+L LY G R++E +LT I Q + I GKG+K R VP Sbjct: 130 DQKDPLW--QRNAALLECLYATGARVAEIATLTLSQIDFQQRLILIHGKGNKDRYVPFGH 187 Query: 205 SVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 +KA+ +Y +L N +F RG+P+ + L L Sbjct: 188 YAQKAMQQYIAQLRPELVANCPENTVVFVNHRGQPITAAGITYILNTLMNRSTLTGKIHP 247 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 H LRH+FATHLL+NG D+R++Q +LGH LSTTQ+YT+V Sbjct: 248 HMLRHTFATHLLNNGADMRTVQELLGHVNLSTTQMYTHV 286 >gi|332686606|ref|YP_004456380.1| site-specific tyrosine recombinase [Melissococcus plutonius ATCC 35311] gi|332370615|dbj|BAK21571.1| site-specific tyrosine recombinase [Melissococcus plutonius ATCC 35311] Length = 299 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 100/323 (30%), Positives = 155/323 (47%), Gaps = 30/323 (9%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 ME N PE+ +L+ L +ERG S+ T +Y+ D + FL Sbjct: 1 MENTNWPEL-----------FLRYLIVERGYSQKTKLAYQEDLSHYFQFLK--ESGNTDY 47 Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 TI L ++R ++S ++ R ++ ++SF ++L K + E+ + K Sbjct: 48 LTIDHL---DVRVYLSFLYENNYSRSTISRKIASLRSFYQFLLKNERIQENPFSYVHMKK 104 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 K LP EK+ L D+ +T +D RN A+L +LYG G+R+ E ++LT + Sbjct: 105 KQQRLPLFFYEKEMALLFDSTTGNTP-----LDYRNRALLEVLYGTGIRVGECINLTMEA 159 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI----QLPLFRGIRGK 236 I D S L + GKG+K R +P A+ EY+ D+ +N +F G Sbjct: 160 IDFDTSVLFVHGKGNKDRYIPFGSFANDALKEYFHKGR-DILMNKYQKQHKYVFVNHYGD 218 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 L + + QL R L H LRH+FATHLL+NG D+R++Q +LGH LSTTQ Sbjct: 219 QLTSAGIEYILNQLIRKSSLNTEIHPHMLRHTFATHLLNNGADMRTVQELLGHENLSTTQ 278 Query: 297 IYTNVNSKNGGDWMMEIYDQTHP 319 IY +V ++ + + Y HP Sbjct: 279 IYAHVTKES----LQKNYRTFHP 297 >gi|326202104|ref|ZP_08191974.1| tyrosine recombinase XerD [Clostridium papyrosolvens DSM 2782] gi|325987899|gb|EGD48725.1| tyrosine recombinase XerD [Clostridium papyrosolvens DSM 2782] Length = 294 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 95/305 (31%), Positives = 160/305 (52%), Gaps = 22/305 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + ++ LE ++ LS TLQSY+ D Q++ +L ++I + I + T + A++ Sbjct: 6 EKFINFLERDKRLSLNTLQSYKRDIEQYITYL-----KEINVTNIANTNKTTVIAYLLHL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + ++ R+L+ I+SF ++L K K+ + + K LP+ L+ ++ L+ Sbjct: 61 QKKGRATSTISRNLASIRSFYQFLYKDKVIDNDPTSELESPKVEKKLPQILSTQEVELLL 120 Query: 139 DNVLLHTSHETKWID---ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 + + K +D R+ A+L LLY G+R+SE +SL +I + +R KG Sbjct: 121 E--------QPKCLDLKGIRDKAMLELLYATGIRVSELISLNLDDINFELGFIRC-NKGT 171 Query: 196 KIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 + R +P+ A+ EY D F + + + LF + GK L F + I+ + Sbjct: 172 RERTIPIGSISMAAVHEYLDKSRNFLIQDSQETALFVNVNGKRLTRQGFWKIIKHYKNQA 231 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 + T HTLRHSFA HLL NG DLRSIQ +LGH +S+TQIY + +KN + ++Y Sbjct: 232 KINKDITPHTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQIYAQI-AKNK---IKDVY 287 Query: 315 DQTHP 319 +THP Sbjct: 288 KKTHP 292 >gi|91216360|ref|ZP_01253327.1| putative tyrosine recombinase [Psychroflexus torquis ATCC 700755] gi|91185498|gb|EAS71874.1| putative tyrosine recombinase [Psychroflexus torquis ATCC 700755] Length = 298 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 100/309 (32%), Positives = 163/309 (52%), Gaps = 28/309 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY----TEEKITIQTIRQLSYTEIRAF 74 Q++ L+IERGL+ T+Q+Y D + +++ Y T E + +T++ Y+ Sbjct: 8 QDFTYYLKIERGLADNTVQNYRLDILKLANYISEYNATLTPELVDEETLQSFIYS----- 62 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 ISK I +RS R +SG+KSF YL + + + + + LP L+ + Sbjct: 63 ISK----VINERSQARLISGLKSFFDYLIFEDYRKTNPLELIESPRLGRRLPDTLSTDEI 118 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 LV+ + L SH RN AI+ LYGCGLR+SE + L ++ ++ +++ GKG Sbjct: 119 DQLVEAIDL--SH---LQGHRNKAIIETLYGCGLRVSELVELKISDLFFEKGFIKVIGKG 173 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQL 250 +K R+VP+ +K I Y + F ++LN Q LF RG L + ++QL Sbjct: 174 NKERLVPINTYTQKFISIYKE--EFRIHLNQQSEFKDILFLNRRGAQLTRAMIFTIVKQL 231 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 + + L + + HT RHSFATHLL NG +LR IQ +LGH ++TT+IY +++ + + Sbjct: 232 AKKINLQKNISPHTFRHSFATHLLENGANLRVIQQMLGHESITTTEIYMHLDKTH----L 287 Query: 311 MEIYDQTHP 319 + + HP Sbjct: 288 KSVLENYHP 296 >gi|322435168|ref|YP_004217380.1| integrase family protein [Acidobacterium sp. MP5ACTX9] gi|321162895|gb|ADW68600.1| integrase family protein [Acidobacterium sp. MP5ACTX9] Length = 311 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 88/305 (28%), Positives = 155/305 (50%), Gaps = 19/305 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +ERGL + ++Y D QF FL + + + +Q ++ F+ + R + Sbjct: 16 LRVERGLRPNSCEAYGRDLLQFAEFLE--KRDGLLVGATQQ----DVGEFLGQLRGHAVE 69 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 RS+ R LSG+K F K+L K LN+ + LP+++ E + + +++ + Sbjct: 70 SRSVARKLSGLKGFYKWLLMDKRVRHDPTLNVASPSVWKILPKSMAESEVVGMLERTGVA 129 Query: 145 T-SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 + + I R+ AIL LLY GLR+ E +L +++ + +++GKGDK RIVPL Sbjct: 130 ARAADADGIALRDHAILELLYAGGLRVGEICALRVEDVRLEDQRAQVRGKGDKERIVPLG 189 Query: 204 PSVRKAILEYYDLCPFDL----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 A+ Y D L ++ +F +RG+ L ++++ ++ R Sbjct: 190 RQACDALAIYLDRGRPGLARGAGAGMRREMFLSVRGRALT----RQWVWEMVRGCSENGD 245 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H LRHS ATH++ +G DLRS+Q+ LGH ++TTQ+YT+V + + E++ HP Sbjct: 246 ASPHKLRHSCATHMVEHGADLRSVQTFLGHADIATTQVYTHVALGH----LKEVHRLHHP 301 Query: 320 SITQK 324 ++ Sbjct: 302 RAKRR 306 >gi|229174497|ref|ZP_04302029.1| Tyrosine recombinase xerC [Bacillus cereus MM3] gi|228609057|gb|EEK66347.1| Tyrosine recombinase xerC [Bacillus cereus MM3] Length = 299 Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 92/311 (29%), Positives = 160/311 (51%), Gaps = 31/311 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q ++ L+IER SK T+ SY+ D F+ F+ E+ I + ++Y ++R +++ Sbjct: 8 QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYLTTL 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137 +K+ +S+ R +S ++S ++L R+ + N + +L KK S+P+ L ++ L Sbjct: 63 HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEELEEL 121 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 + T + RN A+L L+Y G+R+SE ++L +I T+ + GKG K Sbjct: 122 FEVADTETP-----LGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 176 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248 R +P + A++ Y + N QL +F +G PL + + Sbjct: 177 RYIPFGSYAQDALITYIE------NGRKQLAHKTEEHSHMVFLNAKGTPLTSRGVRYVLN 230 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 +L + L + + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ + Sbjct: 231 ELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 286 Query: 309 WMMEIYDQTHP 319 + +Y + HP Sbjct: 287 RLRSVYMKHHP 297 >gi|57234468|ref|YP_181457.1| tyrosine recombinase XerC [Dehalococcoides ethenogenes 195] gi|57224916|gb|AAW39973.1| tyrosine recombinase XerC [Dehalococcoides ethenogenes 195] Length = 307 Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 98/310 (31%), Positives = 155/310 (50%), Gaps = 35/310 (11%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ L +E+ +S TL++Y D + F+ + E+K++ + ++ +R ++S Sbjct: 8 YLEYLTVEKNVSAYTLRNYRTD---LIGFVNYLIEKKVS--SFDKVDRYILRDYMSSLIE 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + I S+ R LS ++SF +YL + + ++ LN + + LP L + N Sbjct: 63 KGIVKGSIARKLSAVRSFYRYLMREGLIQKNPTLNASSPRLDKRLPEFLTTAEV-----N 117 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LL + R+ A + LLY GLR+SE + L +N+ +R+ GKG K RIV Sbjct: 118 KLLRIPDSSTPQGLRDKAFMELLYASGLRVSELVKLDIENLDLHSHQIRVWGKGSKERIV 177 Query: 201 PL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP---LNPG-------VFQRYIRQ 249 + LP++ ++I Y LN+ PL +G R P LNP FQ + + Sbjct: 178 LMGLPAI-QSIQTY---------LNLGRPLLKGKRNTPALFLNPNGGRLSARSFQERLDK 227 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 L G+ H LRH+FATHLL G DLR +Q +LGH LSTTQIYT+V Sbjct: 228 LAHQAGIEKHVHPHMLRHTFATHLLDGGADLRVVQELLGHSNLSTTQIYTHVTKSQA--- 284 Query: 310 MMEIYDQTHP 319 ++Y +HP Sbjct: 285 -RKVYMSSHP 293 >gi|120609495|ref|YP_969173.1| phage integrase family protein [Acidovorax citrulli AAC00-1] gi|120587959|gb|ABM31399.1| phage integrase family protein [Acidovorax citrulli AAC00-1] Length = 326 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 93/318 (29%), Positives = 154/318 (48%), Gaps = 26/318 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+++ +E+ L++ T+ Y D L LA + + QL IR F+++ Sbjct: 18 YLEHVRVEKRLAERTVTLYTLD----LAKLAASARDAGV--PLLQLQTAHIRRFVAQMHA 71 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 R + LSG + F + ++ + + + +R + LP+AL A+ L + Sbjct: 72 GGRSGRGIALILSGWRGFFAWAARQGLVPHNPVQGVRAPRAPKPLPKALGVDDAVRLAE- 130 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR----------- 189 +S W++AR++A++ LLYGCGLR+ E L D Q R Sbjct: 131 -FEGSSGSDPWLEARDAAMVELLYGCGLRVGELAGLDAVPGPDTQRQGRGWIDLEAAEAH 189 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYD--LCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRY 246 + GKG K R VP+ + A+ + + L PF + + LF G RG L Sbjct: 190 VFGKGSKRRSVPVGSAALAALRAWLEVRLQPFGAASGRVDAALFLGRRGARLTGQSIWSR 249 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 +RQ + GL H LRHSFA+HLL + GDLR++Q +LGH ++TTQ+YT ++ ++ Sbjct: 250 LRQRSQLAGLSTPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTRLDFQH- 308 Query: 307 GDWMMEIYDQTHPSITQK 324 + ++YD HP +K Sbjct: 309 ---LAKVYDAAHPRARRK 323 >gi|76789612|ref|YP_328698.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis A/HAR-13] gi|237803298|ref|YP_002888492.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis B/Jali20/OT] gi|237805218|ref|YP_002889372.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis B/TZ1A828/OT] gi|76168142|gb|AAX51150.1| integrase/recombinase [Chlamydia trachomatis A/HAR-13] gi|231273518|emb|CAX10435.1| integrase/recombinase [Chlamydia trachomatis B/TZ1A828/OT] gi|231274532|emb|CAX11328.1| integrase/recombinase [Chlamydia trachomatis B/Jali20/OT] Length = 300 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 96/299 (32%), Positives = 158/299 (52%), Gaps = 24/299 (8%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L ++ G+S L++Q+Y D FL ++ +I+ +++ + F+ K K Sbjct: 19 LSVDHGISPLSVQAYCQDVLLFL--------QRASIEATDRINQESVFLFVEKCHKAKES 70 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 + +L R L +K F +LK K+ + + + K LP L+ ++ +L+D L Sbjct: 71 ETTLARRLIALKVFFHFLKDAKMLDQQPFIEHPKIWKR--LPSILSTEEVNSLLDQPLNI 128 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + +T I +R++AILY Y G+R+SE L +I DD +R+ GKG K R+VP+ Sbjct: 129 PNLDTH-IASRDAAILYTFYATGIRVSELCDLCIGDISDD--FIRVTGKGRKTRLVPISI 185 Query: 205 SVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 ++AI Y L F L + P +F IRGK L+ + I + + Sbjct: 186 KAKQAIDAY--LSSFRDELQKKNPSEEHVFLSIRGKKLDRSCVWKRITFYAKLVTTK-RI 242 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H+LRH+FATHLL+N DLR IQ +LGH R+S+T+IYT+V S++ ++E + HP Sbjct: 243 SPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVASES----LIEKFHTYHP 297 >gi|317493832|ref|ZP_07952249.1| tyrosine recombinase XerD [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918159|gb|EFV39501.1| tyrosine recombinase XerD [Enterobacteriaceae bacterium 9_2_54FAA] Length = 299 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 95/303 (31%), Positives = 154/303 (50%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ER L++ TL SY D R +LA + + + Q ++++ F+++R Sbjct: 10 EQFLDALWLERNLAENTLASYRLDLRSLAEWLAHHHSDLLLAQV------SDLQDFLAER 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +Y + K+ ++ + + K LP+ L E Q TL+ Sbjct: 64 VDGGYKATSSARLLSAMRRLFQYFYREKMRSDDPTTLLSSPKLPQRLPKDLTEAQVDTLL 123 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + I+ R+ A+L +LY GLR+SE + LT ++ Q +R+ GKG+K R Sbjct: 124 QTPCIENP-----IELRDKAMLEVLYATGLRVSELVGLTLADVSLRQGVVRVIGKGNKER 178 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL I Y + P+ LN LF R + + F I+ G+ Sbjct: 179 LVPLGEEAVYWIEYYLEYGRPWLLNGQTIDVLFPSNRTQQMTRQTFWHRIKHYAVLAGID 238 Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 S + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Q Sbjct: 239 SSRLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQQ 294 Query: 317 THP 319 HP Sbjct: 295 HHP 297 >gi|86131808|ref|ZP_01050405.1| phage integrase family protein [Dokdonia donghaensis MED134] gi|85817630|gb|EAQ38804.1| phage integrase family protein [Dokdonia donghaensis MED134] Length = 296 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 92/300 (30%), Positives = 154/300 (51%), Gaps = 14/300 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ L +E+ SK T+ +YE D F +FL E+ ++ ++Y +IRA+I Sbjct: 6 FLEYLNLEKNYSKHTVLAYEKDVTSFFVFLENNYGERDPVK----VAYAQIRAWIISLVD 61 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + +S+ R +S +KS+ K+L K S ++ ++LK S + +EK+ V Sbjct: 62 AGLSSQSVNRKVSSLKSYYKFLLKTGDILVSPLVKHKSLKVSKRVQIPFSEKE----VAI 117 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 VL + R+ I+ LLYG G+R +E + LT ++ Q L+++GK DK R + Sbjct: 118 VLEELRESQDFTSLRDLLIVELLYGTGMRRAELIDLTMGSVDFSQKILKVKGKRDKERFI 177 Query: 201 PLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 PLLP V + Y + + N + PL ++G + + R I + Sbjct: 178 PLLPGVITTLERYVVERAQVAQSGNSE-PLLVTLKGLKVYSTLVYRIINRYFSEASDKFK 236 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T+ H LRHSFATHLL+ G DL ++ +LGH L++TQ+YT+ N + ++Y + HP Sbjct: 237 TSPHILRHSFATHLLNQGADLNVVKELLGHASLASTQVYTH----NSIKALKDVYSKAHP 292 >gi|332139609|ref|YP_004425347.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype'] gi|327549631|gb|AEA96349.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype'] Length = 306 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 89/310 (28%), Positives = 161/310 (51%), Gaps = 19/310 (6%) Query: 19 QNWLQ----NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 Q WL +L++ERGLS T+++Y+ + L Y +T ++I+ Sbjct: 12 QQWLDKFLLHLQVERGLSLHTIKNYKRQLTEVAKLLGLYEWSGLTP--------SDIKRV 63 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 ++ + RS+ LS +++F +YL + + + + ++ K+ LP+ L+ + Sbjct: 64 MADAKMSGHSPRSIALRLSALRTFCQYLIEHQQLFSNPVEGIQAPKQGKPLPKQLSVDEM 123 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 L+ N +S E + + R+ A+ LLYGCGLR+SE L + + D T+++ GKG Sbjct: 124 QQLL-NASPQSSDEDEGMQLRDVAMFELLYGCGLRLSELTGLNLADCLKD-GTVKVMGKG 181 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 K RI+PL +KA+ + + P + + +F R ++ + ++ + Sbjct: 182 SKQRILPLGRHAQKALNAWLKVRPAYAS-PYESAVFVSKRKTRISNRQVANRLDKMAKEH 240 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 L + H LRHSFATH+L + GDLR++Q +LGH LSTTQ+YT+++ ++ + +Y Sbjct: 241 SLSQKVSPHKLRHSFATHVLESSGDLRAVQELLGHANLSTTQVYTHLDFQH----LANVY 296 Query: 315 DQTHPSITQK 324 D+ HP +K Sbjct: 297 DEAHPRAHKK 306 >gi|229019026|ref|ZP_04175867.1| Tyrosine recombinase xerC [Bacillus cereus AH1273] gi|229025272|ref|ZP_04181692.1| Tyrosine recombinase xerC [Bacillus cereus AH1272] gi|228736025|gb|EEL86600.1| Tyrosine recombinase xerC [Bacillus cereus AH1272] gi|228742266|gb|EEL92425.1| Tyrosine recombinase xerC [Bacillus cereus AH1273] Length = 302 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 92/311 (29%), Positives = 159/311 (51%), Gaps = 31/311 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q ++ L+IER SK T+ SY+ D F+ F+ E+ I + ++Y ++R +++ Sbjct: 11 QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYLTTL 65 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137 +K+ +S+ R +S ++S ++L R+ + N + +L KK S+P+ L ++ Sbjct: 66 HDEKLARKSVARKVSSLRSLYRFLM-REGYQKDNPFALASLPKKELSIPKFLYAEEL--- 121 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 L S + RN A+L L+Y G+R+SE ++L +I T+ + GKG K Sbjct: 122 --EELFEVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 179 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQL---------PLFRGIRGKPLNPGVFQRYIR 248 R +P + A++ Y + N QL +F +G PL + + Sbjct: 180 RYIPFGSYAQDALITYIE------NGRKQLIQKTEEHSHMVFLNAKGTPLTDRGVRYVLN 233 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 +L + L + + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ + Sbjct: 234 ELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 289 Query: 309 WMMEIYDQTHP 319 + +Y + HP Sbjct: 290 RLRSVYMKHHP 300 >gi|319892482|ref|YP_004149357.1| Tyrosine recombinase XerD [Staphylococcus pseudintermedius HKU10-03] gi|317162178|gb|ADV05721.1| Tyrosine recombinase XerD [Staphylococcus pseudintermedius HKU10-03] gi|323464415|gb|ADX76568.1| tyrosine recombinase XerD [Staphylococcus pseudintermedius ED99] Length = 295 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 97/306 (31%), Positives = 161/306 (52%), Gaps = 21/306 (6%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE---IRAF 74 R +L+ ++IE+GLS T+ +Y D +L +LA E K+ L++ + I+ + Sbjct: 5 RDEYLRFIQIEKGLSNNTIAAYRRDLNHYLNYLA---EHKVA-----NLNFVDRQMIQEW 56 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 + +++ R S I+SF ++ + T+ + + K LP L + Sbjct: 57 FGFLHDEGRSAKTIARFTSTIRSFHQFALRENYTSHDPTVLIETPKYDRKLPDVL----S 112 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 + V+ +L+ E+K R+ +L LLY G+R+SE +++ ++I +++ GKG Sbjct: 113 IAEVEQLLM-APDESKVNGYRDKTMLELLYATGIRVSELINIEVEDINLMMGFVKVFGKG 171 Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 K RIVPL +V + Y ++ P L + LF + GKPL+ + I+Q Sbjct: 172 SKERIVPLGETVIDCLTHYIQNIRPQLLKHTVTHVLFLNLHGKPLSRQGVWKMIKQTGVK 231 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ T HTLRHSFATHLL NG DLR++Q +LGH +STTQ+YT++ +KN + +I Sbjct: 232 AGIMKRLTPHTLRHSFATHLLENGADLRAVQDMLGHSDISTTQLYTHI-TKN---QIRKI 287 Query: 314 YDQTHP 319 Y HP Sbjct: 288 YQDYHP 293 >gi|223041687|ref|ZP_03611883.1| site-specific recombinase XerD [Actinobacillus minor 202] gi|223017496|gb|EEF15911.1| site-specific recombinase XerD [Actinobacillus minor 202] Length = 301 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 98/303 (32%), Positives = 150/303 (49%), Gaps = 18/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L E GLS T+ SY D LI + +E TI + ++ F+ R Sbjct: 13 EQFLDTLWQEHGLSDNTVSSYRLD----LILFMEWLDESRAFLTI---DHHALQEFLGYR 65 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q S R LS ++ F ++L + + +K + LP+ LNE+Q + L+ Sbjct: 66 FDQGYKASSSLRMLSCLRKFFRFLYLENYRKDDPTAMLVAPRKPSRLPKTLNEEQVMDLL 125 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + I+ R+ A+L LLY GLR++E +SLT +N+ Q +RI GKGDK R Sbjct: 126 D-----CPNPLDPIELRDKAMLELLYATGLRVTELISLTTENLSLRQGVVRIIGKGDKER 180 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL I E++ LN +F RG+ + F I+ G+ Sbjct: 181 LVPLGEEASYWIQEFFQYGRGILLNNEPSSIVFPSKRGQMMTRQTFWHRIKHYAVLAGID 240 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHL+++G DLR +Q +LGH LSTTQIYT+V + ++++ Sbjct: 241 SEKLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKAR----LKSLHEK 296 Query: 317 THP 319 HP Sbjct: 297 YHP 299 >gi|325918374|ref|ZP_08180505.1| tyrosine recombinase XerC subunit [Xanthomonas vesicatoria ATCC 35937] gi|325535397|gb|EGD07262.1| tyrosine recombinase XerC subunit [Xanthomonas vesicatoria ATCC 35937] Length = 302 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 91/311 (29%), Positives = 154/311 (49%), Gaps = 22/311 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK-----ITIQTIRQLSYTEIRA 73 + +L L++ER +S TL +Y R L++ E+K + QL ++R Sbjct: 5 EAFLAYLQVERQVSAHTLDAYR---RDLAALLSWAAEQKNDAGVAVALDVAQLDSAQLRQ 61 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 F++ + + +SL+R LS +S+ +L K T S +R K LP+ L+ + Sbjct: 62 FVAAEHRRGLSAKSLQRRLSACRSYYAWLLKHGRITASPAAALRAPKAPRKLPQVLDADE 121 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 A+ LV+ + R+ A+L L Y GLR+SE +L +++ + + GK Sbjct: 122 AVRLVEVP------TDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLASGLVMVLGK 175 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 G K R+VP+ A+ E+ D + +F G G ++ Q I+QL Sbjct: 176 GGKQRLVPVGSHAIAALREWQR----DSGGRAETHVFPGRAGGAISQRAVQIRIKQLAVR 231 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ H LRHSFA+H+L + GDLR +Q +LGH ++TTQIYT+++ ++ + ++ Sbjct: 232 QGMFKDVHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQH----LAKV 287 Query: 314 YDQTHPSITQK 324 YD HP +K Sbjct: 288 YDAAHPRARRK 298 >gi|311745586|ref|ZP_07719371.1| tyrosine recombinase XerD [Algoriphagus sp. PR1] gi|126578148|gb|EAZ82368.1| tyrosine recombinase XerD [Algoriphagus sp. PR1] Length = 301 Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 89/301 (29%), Positives = 157/301 (52%), Gaps = 23/301 (7%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L++ER LS+ ++++Y D + LA Y+ + + L +R F+++ +I Sbjct: 16 LKLERSLSENSIEAYTRDVEK----LAAYSSKNFPDKNPLNLELEHLRKFVNELAQLEIS 71 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 D + R +SGIK+F ++L TE + K LP L+ ++ + L++ + L Sbjct: 72 DYTQARIISGIKAFYRFLMYEDKITEDPAQLLEAPKLGRKLPDTLSYQEIVQLLEAIPLG 131 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 RN A+L +LY GLR+SE + L I +D LR+ GKG+K R+VP Sbjct: 132 EPE-----GHRNRAMLEMLYSSGLRVSELIELKKGQIFEDIGFLRVIGKGNKERLVP--- 183 Query: 205 SVRKAILEYYDLCPFDLNLNIQLP------LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 + K L+Y ++ ++ ++ + +F RGK L+ + I++ G+ Sbjct: 184 -IGKDALKYLNIYKDEVRVHQSIAKGHEEFVFLNRRGKKLSRVMIFLIIKKTAELAGIEK 242 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + + HT RHSFATHL+ G DLR++Q +LGH ++TT+IYT+++ D++ ++ H Sbjct: 243 NISPHTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTHLDR----DYLRQVLTDFH 298 Query: 319 P 319 P Sbjct: 299 P 299 >gi|325860159|ref|ZP_08173284.1| putative tyrosine recombinase XerD [Prevotella denticola CRIS 18C-A] gi|325482246|gb|EGC85254.1| putative tyrosine recombinase XerD [Prevotella denticola CRIS 18C-A] Length = 315 Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 99/309 (32%), Positives = 155/309 (50%), Gaps = 24/309 (7%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L++E+G S TL +Y D + L +LA + +T T+ QL + F + IG Sbjct: 18 LKLEKGCSPNTLDAYLHDVDKLLRYLAG-EQVSVTDVTLEQLEH-----FAASVSDLGIG 71 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 RSL R LSG++ F ++L + + K+ + LP L+ + L V L Sbjct: 72 ARSLARILSGVRQFYRFLVLDGYMEADPTELLESPKQPDHLPEVLSTAEVDLLEQAVDL- 130 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 TKW RN AI+ +L+ CGLR+SE L ++ ++ +R+ GKG K R+VP+ P Sbjct: 131 ----TKWEGHRNRAIIEVLFSCGLRVSELTHLKLSDLYREEQFVRVMGKGSKERLVPISP 186 Query: 205 SVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 L+ D D N+ P +F RG L + I++ G+ + Sbjct: 187 RA----LDELDCWFADRNVMKIKPGEEDYVFLNRRGHHLTRTMILIMIKRYAVEAGIRKT 242 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRHSFAT LL G DLR+IQ++LGH + TT+IYT++++ ++E HP Sbjct: 243 ISPHTLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTHIDTSTLRQEILE----HHP 298 Query: 320 SITQKDKKN 328 + DK++ Sbjct: 299 RNIRYDKEH 307 >gi|168703879|ref|ZP_02736156.1| integrase/recombinase [Gemmata obscuriglobus UQM 2246] Length = 301 Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 94/303 (31%), Positives = 149/303 (49%), Gaps = 15/303 (4%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L +L +E+ S T++SY D Q L F+ T++ + + +R+F+S Sbjct: 9 DFLTHLGLEKNSSDKTVKSYREDLTQALGFVRDRTKKGHV--AVGDWTTRTVRSFVSWLH 66 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q ++ R L+ ++SF KYL + + + L +R K+ LP LTL D Sbjct: 67 EQGYAKSTIARRLAAVRSFSKYLCRAGVLDVNPALALRGPKQDKKLP------HFLTLAD 120 Query: 140 -NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL T W R+ A+L LY G+R+SE + L + + + ++GKG K R Sbjct: 121 VQKLLTAPPATDWAGRRDRAVLETLYASGIRVSELVGLDLLAVDLNDGVITVRGKGKKER 180 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 + L P KAI +Y+ L Q +F +G L R + + GL Sbjct: 181 LALLGPDAVKAITLWYEDRSALLARTGQETEAVFLNNKGGRLTTRSVGRLLSHHLKVAGL 240 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 T+ HTLRHSFATH+L G D+R +Q +LGH L+TTQ+YT+V ++ + + Y + Sbjct: 241 DPRTSPHTLRHSFATHMLDAGADIRGVQELLGHKSLATTQVYTHVTTQR----LQQSYQK 296 Query: 317 THP 319 HP Sbjct: 297 AHP 299 >gi|223043159|ref|ZP_03613206.1| tyrosine recombinase XerD [Staphylococcus capitis SK14] gi|314933674|ref|ZP_07841039.1| tyrosine recombinase XerD [Staphylococcus caprae C87] gi|222443370|gb|EEE49468.1| tyrosine recombinase XerD [Staphylococcus capitis SK14] gi|313653824|gb|EFS17581.1| tyrosine recombinase XerD [Staphylococcus caprae C87] Length = 295 Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 97/311 (31%), Positives = 161/311 (51%), Gaps = 33/311 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L ++IE+GLS T+ +Y D +++ Y EE R++S+ + F+ ++ Sbjct: 6 EEYLNFIQIEKGLSSNTIGAYRRDLKKY----EEYLEE-------RKISHID---FVDRQ 51 Query: 79 RTQKI---------GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 Q+ +SL R +S I+SF ++ + + + + + K LP L Sbjct: 52 VIQECLGHLIDLGQSSKSLARFISTIRSFHQFALRERYAAKDPTVLIETPKYEKKLPDVL 111 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 ++ L L L T +K R+ +L LLY G+R+SE + L +++ +R Sbjct: 112 EVQEVLDL-----LETPDLSKNNGYRDRTMLELLYATGMRVSEIIQLEVEDVNLMMGFVR 166 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 + GKG+K RIVPL +V + + Y + P L + LF + GKPL+ + I+ Sbjct: 167 VFGKGNKERIVPLGDAVIEYLTTYIETVRPQLLKQTVTHVLFLNMHGKPLSRQGIWKMIK 226 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 Q + + T HTLRHSFATHLL NG DLR++Q +LGH +STTQ+YT+V+ Sbjct: 227 QNGIKANINKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ--- 283 Query: 309 WMMEIYDQTHP 319 + ++Y+Q HP Sbjct: 284 -IRKMYNQFHP 293 >gi|269140272|ref|YP_003296973.1| site-specific tyrosine recombinase [Edwardsiella tarda EIB202] gi|267985933|gb|ACY85762.1| site-specific tyrosine recombinase [Edwardsiella tarda EIB202] gi|304560099|gb|ADM42763.1| Site-specific recombinase XerD [Edwardsiella tarda FL6-60] Length = 299 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 96/303 (31%), Positives = 160/303 (52%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +E+ L++ TL SY D R +LA++ +T+ T ++ +++ F ++R Sbjct: 10 EQFLDALWLEKNLAENTLASYRQDLRTLAEWLAYH---DLTLLTA---AHGDLQDFFAQR 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K+ ++ + + K LP+ L+E Q V Sbjct: 64 MDGGYKASSSARLLSALRRCYQYLYREKLRSDDPSALLASPKLPQRLPKDLSEAQ----V 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D +L + +T ++ R+ A+L LLY GLR+SE + L ++I Q +R+ GKG+K R Sbjct: 120 DALLQAPAIDTP-LELRDKAMLELLYATGLRVSELVGLAQEDISLRQGVVRVIGKGNKER 178 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL I Y + P+ +N LF R + + F I+ G+ Sbjct: 179 LVPLGEEAIYWIEYYLEYGRPWLVNGQTVAALFPSNRARQMTRQTFWHRIKHYAVLAGID 238 Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Q Sbjct: 239 AERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQ 294 Query: 317 THP 319 HP Sbjct: 295 HHP 297 >gi|320104524|ref|YP_004180115.1| integrase family protein [Isosphaera pallida ATCC 43644] gi|319751806|gb|ADV63566.1| integrase family protein [Isosphaera pallida ATCC 43644] Length = 442 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 96/303 (31%), Positives = 152/303 (50%), Gaps = 17/303 (5%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLA-----FYTEEKITIQTIRQLSYTEIRAFIS 76 + +LE R +S+ TL++Y+ D F +LA + ++ I R +R + S Sbjct: 150 VTSLERNREVSEHTLRAYQEDLGLFSRYLAESQPGCASSDREPIDP-RLADARRLRGYSS 208 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 Q ++ R L+ +++F ++L+K MRN K + LPR L Q Sbjct: 209 WLSRQGYAPGTIARRLASLRTFYRHLRKHGHLEGDPTAAMRNPKPARRLPRPLRLDQIER 268 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L++ V S + R+ AIL LLYG GLR+ E ++L +++ +++ +R++GKG + Sbjct: 269 LLEAVPTDQS-----LGVRDRAILELLYGGGLRVGELVALDLEDLDLERNVVRVRGKGRR 323 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 R+ P+ + + + L + + LF G+ L R R LGL Sbjct: 324 ERLTPIGKQAAEWVRRW--LTHRRPDHGGEHALFLNRYGRRLTARSVDRLFETHARGLGL 381 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 T H+LRHSFATHLL G DLRS+Q +LGH RL+TTQIYT V + ++E Y + Sbjct: 382 DADATPHSLRHSFATHLLDRGADLRSVQELLGHRRLTTTQIYTQVTRER----LLETYRK 437 Query: 317 THP 319 HP Sbjct: 438 AHP 440 >gi|256587797|gb|ACU98929.1| integrase [Propionibacterium jensenii] Length = 305 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 82/261 (31%), Positives = 132/261 (50%), Gaps = 6/261 (2%) Query: 60 IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119 + + ++ + +R++++ R +L+R + + F ++ + ++ Sbjct: 48 VTRLAEIDVSALRSWLADGRGAAEAPATLQRHWASARVFFRWACAEGLIGVDPAARLKAA 107 Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 K LPR L QA L+D+ + S + AR++AIL +LYG G+R+ E L Sbjct: 108 KVPRRLPRTLGVDQARRLLDDAVASASTDDSPQGARDAAILEVLYGSGIRVGELCGLDLS 167 Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239 ++ + TLR+ GKG K R VPL +AI + + LF G RG ++ Sbjct: 168 SLDRARDTLRVLGKGSKERTVPLGDPGWRAIDGWLSRRSEWQTASSGQALFLGARGARID 227 Query: 240 PGVFQRYIRQ-LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 P V +R + Q LR G P H LRH+ ATHLL G DLR++Q ILGH L+TTQIY Sbjct: 228 PRVVRRMVHQHLRSEPGFP-DLGPHGLRHAMATHLLEGGADLRTVQEILGHESLATTQIY 286 Query: 299 TNVNSKNGGDWMMEIYDQTHP 319 T+V+++ + ++Q HP Sbjct: 287 THVSTER----LRRAFNQAHP 303 >gi|255011423|ref|ZP_05283549.1| putative tyrosine recombinase [Bacteroides fragilis 3_1_12] gi|313149239|ref|ZP_07811432.1| integrase [Bacteroides fragilis 3_1_12] gi|313138006|gb|EFR55366.1| integrase [Bacteroides fragilis 3_1_12] Length = 319 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 93/285 (32%), Positives = 150/285 (52%), Gaps = 12/285 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + Q L++E+ LSK TL +Y D + L FL ++E + I ++S +++ F + Sbjct: 18 KKYQQYLKLEKSLSKNTLDAYLTDLDKLLNFL---SDEGVDIL---EISLKDLQRFAAGL 71 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 I RS R +SGIKSF +L + K LP L ++ ++ Sbjct: 72 HDIGIHARSQARIISGIKSFFHFLIMADYIEADPSELLEGPKIGFKLPEVLTVEEIDHII 131 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 V L +K RN AIL LY CGLR+SE +L ++ ++ ++++GKG K R Sbjct: 132 STVDL-----SKNEGQRNRAILETLYSCGLRVSELTNLKLSDLYFNEGFIKVEGKGSKQR 186 Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ P + I Y+ D ++ + + LF RG L+ + I++L G+ Sbjct: 187 LVPISPRAIQEIKYYFMDRNRINIKKDYEDYLFLSRRGTHLSRIMIFHLIKELADMAGIT 246 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + + HT RHSFATHLL G +LR+IQ +LGH +STT+IYT+++ Sbjct: 247 KNISPHTFRHSFATHLLEGGANLRAIQCMLGHESISTTEIYTHID 291 >gi|146280903|ref|YP_001171056.1| site-specific tyrosine recombinase XerC [Pseudomonas stutzeri A1501] gi|166918896|sp|A4VGW3|XERC_PSEU5 RecName: Full=Tyrosine recombinase xerC gi|145569108|gb|ABP78214.1| integrase/recombinase XerC [Pseudomonas stutzeri A1501] gi|327479172|gb|AEA82482.1| site-specific tyrosine recombinase XerC [Pseudomonas stutzeri DSM 4166] Length = 299 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 97/313 (30%), Positives = 152/313 (48%), Gaps = 27/313 (8%) Query: 17 ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 E + + L R LS +L +Y D + L + E+ I R L +R I+ Sbjct: 4 ELDAYFEYLRSARQLSGHSLDAYRRDLDKVLTYC-----ERERIAGWRDLQGRHLRHLIA 58 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 ++ Q RSL R LS ++ +YL + + + K LPR L+ +A+ Sbjct: 59 EQHRQGQSSRSLARLLSSVRGLYRYLNQEGLCEHDPATGLSAPKGERRLPRLLDTDRAMQ 118 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L+D + E +I R+ A+L L Y GLR+SE + L + +R+ GKG+K Sbjct: 119 LLDGGV-----EDDFIARRDQAMLELFYSSGLRLSELVGLNLDQLDLAAGLVRVLGKGNK 173 Query: 197 IRIVPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR- 251 +R +P+ R+A+ + L P D +F G +G+ L Q +RQ Sbjct: 174 VRELPVGSKAREALQAWLPLRTLAGPADG------AVFIGQQGRRLGARAVQLRVRQAGV 227 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 R LG L H LRHSFA+HLL + DLRS+Q +LGH + TTQIYT+++ ++ + Sbjct: 228 RELGQHLHP--HMLRHSFASHLLESSQDLRSVQELLGHADIGTTQIYTHLDFQH----LA 281 Query: 312 EIYDQTHPSITQK 324 ++YD HP +K Sbjct: 282 KVYDHAHPRAKRK 294 >gi|270285043|ref|ZP_06194437.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum Nigg] gi|270289068|ref|ZP_06195370.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum Weiss] gi|301336439|ref|ZP_07224641.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum MopnTet14] Length = 299 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 96/299 (32%), Positives = 156/299 (52%), Gaps = 24/299 (8%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L ++RG++ L++Q+Y D FL +++ I+T ++ + F+ K K Sbjct: 17 LSVDRGIAPLSVQAYCQDILLFL--------QRVPIETTDMINQESVFLFVEKCHQAKES 68 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 + +L R L +K F +LK K+ + + + K LP L+ ++ +L+ N L+ Sbjct: 69 ETTLARRLIALKVFFHFLKDAKLIHQQPFIEHPKVWKR--LPSILSTEEVNSLL-NQPLN 125 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 T + +I R++AILY Y G+R+SE L +I DD +R+ GKG K R+VP+ Sbjct: 126 TLNLDAYIANRDTAILYTFYATGIRVSELCDLCIGDISDD--FIRVTGKGRKTRLVPISI 183 Query: 205 SVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 R+ I Y L F + P +F IRGK L + I + + Sbjct: 184 KARQTIDSY--LTMFRERFQKKNPSEEHVFLSIRGKKLERSCVWKRITFYAKLVTTK-HI 240 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H+LRH+FATHLL+N DLR IQ +LGH R+S+T+IYT+V S++ ++E + HP Sbjct: 241 SPHSLRHAFATHLLNNQADLRIIQEMLGHARISSTEIYTHVASES----IIEKFHTHHP 295 >gi|145298066|ref|YP_001140907.1| site-specific integrase/recombinase [Aeromonas salmonicida subsp. salmonicida A449] gi|142850838|gb|ABO89159.1| site-specific integrase/recombinase [Aeromonas salmonicida subsp. salmonicida A449] Length = 303 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 90/302 (29%), Positives = 157/302 (51%), Gaps = 16/302 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ERGLS T+ SY D +F AF+ + + +++ +I+ +++ R Sbjct: 15 EPFLDALWLERGLSDNTVSSYRSDLEKF----AFWLDGQG--RSLLLAGMDDIQHYLAWR 68 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S R LS ++ F +YL + K+ ++ + + K LP L+E + L+ Sbjct: 69 VDHQFAASSTARFLSALRRFYQYLNREKLRSDDPTVLLEGPKLPKKLPSDLSEAEVEALL 128 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + L+ ++ R+ A+L LLY GLR+SE + LT +++ Q +R+ GKG+K R Sbjct: 129 QSPLVDDP-----LELRDKAMLELLYATGLRVSELVGLTAEHVSLRQGLVRVVGKGNKER 183 Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ + YY + L +F + + + F I+ + G+ Sbjct: 184 LVPMGEEAVHWLERYYREARTLLLGGTSSDVVFPSKQARMMTRQTFWHRIKLYAQRAGIR 243 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + ++ + Sbjct: 244 GELSPHTLRHAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVANER----LKALHGEH 299 Query: 318 HP 319 HP Sbjct: 300 HP 301 >gi|78046247|ref|YP_362422.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325925416|ref|ZP_08186815.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118] gi|325928769|ref|ZP_08189938.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118] gi|78034677|emb|CAJ22322.1| Site-specific recombinase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325540850|gb|EGD12423.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118] gi|325544176|gb|EGD15560.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118] Length = 305 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 92/314 (29%), Positives = 155/314 (49%), Gaps = 27/314 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTI----RQLSYTEIRAF 74 +L L++ER +S TL +Y D +++ A TE + + QL +R F Sbjct: 6 EFLTYLQVERQVSAHTLDAYRRDLAALVVWAAEQATEAGVQDAAVPGETAQLDSAHLRQF 65 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 ++ + + +SL+R LS +S+ +L K + S +R K LP+ L+ +A Sbjct: 66 VAAEHRRGLSAKSLQRRLSACRSYYAWLLKHGRISASPAAALRAPKAPRKLPQVLDADEA 125 Query: 135 LTLVDNVLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 + LV+ DA R+ A+L + Y GLR+SE +L +++ D + + Sbjct: 126 VRLVEVP----------TDAPLGLRDRALLEVFYSSGLRLSELCALRWRDLDLDSGLVMV 175 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 GKG K R+VP+ A+ E+ D + +F G G ++ Q I+QL Sbjct: 176 LGKGSKQRLVPVGSHAIAALREWRR----DSGASADSHVFPGRAGGAISQRAVQIRIKQL 231 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ H LRHSFA+H+L + GDLR +Q +LGH ++TTQIYT+++ ++ + Sbjct: 232 AVRQGMFKDVHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQH----L 287 Query: 311 MEIYDQTHPSITQK 324 ++YD HP +K Sbjct: 288 AKVYDAAHPRARRK 301 >gi|300870084|ref|YP_003784955.1| tyrosine recombinase XerD [Brachyspira pilosicoli 95/1000] gi|300687783|gb|ADK30454.1| tyrosine recombinase, XerD [Brachyspira pilosicoli 95/1000] Length = 288 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 94/304 (30%), Positives = 161/304 (52%), Gaps = 19/304 (6%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 +E+GLS+ TL+SY R +I+L F K +TI + + +I F+S+R+ Q R Sbjct: 1 MEKGLSQNTLESYR---RDIVIYLDFLGRNK---KTILKATRKDIEKFLSERKEQGSKSR 54 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL-LHT 145 ++ R+ I + K+L +++ N+ ++ LP +L ++ VD++L +H Sbjct: 55 TVARNKVSIVNLYKFLVMENYISKNPTDNLEVIRLKRVLPESLTTEE----VDDLLSVHN 110 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 K + R+ AI L+Y GLR+SE SL ++I D+ L+I GKG + RIVP+ Sbjct: 111 EKTDKGL--RDKAIFELMYSSGLRVSEICSLKIEDIFFDEKYLKICGKGKRERIVPINDK 168 Query: 206 VRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 + Y + + LF RG ++ + +++ + G+ + HT Sbjct: 169 ALDILKRYIQTSRVVMVKGKKTSELFLNFRGDKISRVGIWKIVKEAMKKSGIEKNVYPHT 228 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 LRHSFATHL+ +G DLRS+Q +LGH ++TT+IYT+V+S + + + HP T+ Sbjct: 229 LRHSFATHLIQHGADLRSVQRMLGHSDITTTEIYTHVDSTHLKKQIAK-----HPKYTKH 283 Query: 325 DKKN 328 ++N Sbjct: 284 TRQN 287 >gi|300775316|ref|ZP_07085178.1| tyrosine recombinase XerD [Chryseobacterium gleum ATCC 35910] gi|300506056|gb|EFK37192.1| tyrosine recombinase XerD [Chryseobacterium gleum ATCC 35910] Length = 304 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 93/301 (30%), Positives = 150/301 (49%), Gaps = 12/301 (3%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L ER S+ TL +Y D ++ L Y EE + ++Y ++ +I QK Sbjct: 14 LRFERNFSENTLDAYVRDIKK----LKDYAEEDLENVGPDSIAYENLQEYIFNLSKQKFS 69 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 +RS R +S IK+F K+L + + ++ + K LP L+ ++ + ++ Sbjct: 70 ERSQARWISSIKAFFKFLLEDEYREDNPAALLEGPKLGLYLPDTLSLPDINKIIAAIEVN 129 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 T + RN I+ +LYGCGLR+SE + L NI + +++ GKG+K R VPL Sbjct: 130 TD-----LGKRNQCIIEVLYGCGLRVSELIDLKISNINFKEQYIKVHGKGNKTRFVPLAD 184 Query: 205 SVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 + Y +N + LF RG ++ + I++L G+ + Sbjct: 185 YTADLLDSYIKEVRSKGKINKKYEDTLFLNSRGTSMSRVIVFLIIKELTDKAGVNKKISP 244 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322 HT RHSFATHLL NG DLR IQ +LGH ++TT+IYT++ ++ D ++ Y + +IT Sbjct: 245 HTFRHSFATHLLQNGADLRYIQEMLGHSSITTTEIYTHLKTEELRDVILS-YHPRNINIT 303 Query: 323 Q 323 Q Sbjct: 304 Q 304 >gi|157692293|ref|YP_001486755.1| site-specific tyrosine recombinase XerC [Bacillus pumilus SAFR-032] gi|172046054|sp|A8FD78|XERC_BACP2 RecName: Full=Tyrosine recombinase xerC gi|157681051|gb|ABV62195.1| tyrosine recombinase [Bacillus pumilus SAFR-032] Length = 305 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 89/303 (29%), Positives = 150/303 (49%), Gaps = 18/303 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +++ L+IE+ S LT+ Y +F+ F+ I ++SY + R ++++ Sbjct: 11 FIEYLQIEKNYSALTISGYTEAIEEFVRFMNVQG-----IDGFEEVSYQDTRIYLTEAYE 65 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + R++ + +S ++SF K+L + ++ E+ L + K+ +P L E++ Sbjct: 66 KGLTRRTISKKVSALRSFYKFLLREQLVKENPFLLVSLPKQDKRIPSFLYEEEL-----K 120 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 L S + + RN AIL LLY G+R+SE SL ++ T+ + GKG K R V Sbjct: 121 ELFTVSDVSTPLGQRNQAILELLYATGMRVSELCSLKESDLDLSMDTVLVHGKGSKQRYV 180 Query: 201 PLLPSVRKAILEYYDLCPFDLNLN----IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 P +A++ Y + L +F RG PL + + +L + Sbjct: 181 PFGSYAHEALITYLEDGRLKLKAKGKDRADAYVFLNQRGAPLTDRGVRFILTELMKKASG 240 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 L H LRH+FATHLL+ G DLRS+Q +LGH LS+TQ+YT+V+ D + + Y Sbjct: 241 TLHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTHVSK----DSLRKTYMS 296 Query: 317 THP 319 HP Sbjct: 297 HHP 299 >gi|226952079|ref|ZP_03822543.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244] gi|226837171|gb|EEH69554.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244] Length = 310 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 91/305 (29%), Positives = 164/305 (53%), Gaps = 22/305 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL+ I+ S T+ +Y+ D F F + +++ ++ + +++R +++ R Sbjct: 15 WLKERVIQNQ-SAHTISAYQRDLTDFFKFCEY---KQLQLEDV---EASDLREYLASRVE 67 Query: 81 Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q ++ SL+R L+ I+ F+K+ + + + + + ++ LP ++ + V+ Sbjct: 68 QDQLSSSSLQRHLTSIRQFMKWAAQGRYLQHNPSADFKLKRQPRPLPGMID----IETVN 123 Query: 140 NVLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 +L T+ E K ID R+ A+L LLY GLR++E LT ++I ++ LRI GKG+ Sbjct: 124 QILDQTAPE-KLIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLLRITGKGN 182 Query: 196 KIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 K RIVP +++++E+ + + +F +G+ L P + ++ + Sbjct: 183 KTRIVPFGLKAKQSLIEWLKIYRIWQGGFTADSAVFISQQGRALMPRQIENRVKLQAQRA 242 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ + H LRH FA+H+LS GDLRS+Q +LGH LSTTQIYT+V+ D + ++Y Sbjct: 243 GVNVDLHPHLLRHCFASHMLSASGDLRSVQEMLGHSNLSTTQIYTHVDF----DQLAKVY 298 Query: 315 DQTHP 319 DQ HP Sbjct: 299 DQAHP 303 >gi|126650133|ref|ZP_01722366.1| site-specific tyrosine recombinase XerD [Bacillus sp. B14905] gi|126593305|gb|EAZ87267.1| site-specific tyrosine recombinase XerD [Bacillus sp. B14905] Length = 300 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 98/309 (31%), Positives = 153/309 (49%), Gaps = 27/309 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++++ +++ER LS TL SY D ++ FL + + ++ T I + + Sbjct: 9 EDYIHFIQVERQLSVNTLASYRRDLESYVNFL----QNAEGMADFNRVERTTILRHLEQL 64 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R Q R++ R +S I+SF ++L + K +++ LP L+ ++ Sbjct: 65 RAQGKTSRTIARHISSIRSFHQFLLREKRAESDPTVHLEMPTIEQKLPNILSIEEI---- 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL + +K R+ A+L LLYG G+RISE ++L +I +R+ GKG K R Sbjct: 121 -EALLTAPNRSKPQGIRDLAMLELLYGSGMRISELIALDLADIHLTMGFVRVFGKGGKER 179 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQL--------PLFRGIRGKPLNPGVFQRYIRQL 250 I+PL S AI Y + N QL F RGK L + +++ Sbjct: 180 IIPLGKSALSAISTYLN------NARGQLQGKYPKTDAFFINQRGKRLTRQGCWKLMKEH 233 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ T HTLRHSFATHL+ NG DLR++Q +LGH +STTQIYT+++ + Sbjct: 234 ALKAGIQHELTPHTLRHSFATHLVENGADLRAVQEMLGHADISTTQIYTHISKTR----L 289 Query: 311 MEIYDQTHP 319 E+Y Q HP Sbjct: 290 SEVYKQFHP 298 >gi|237797828|ref|ZP_04586289.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020678|gb|EGI00735.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. oryzae str. 1_6] Length = 290 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 93/303 (30%), Positives = 149/303 (49%), Gaps = 21/303 (6%) Query: 24 NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83 +L ER +S TL++Y D + L + +K + + +L +R+F +++ Q Sbjct: 2 HLRSERQVSPHTLEAYRRDLGKVLAYC-----QKAQLSSWNELDIQHLRSFTARQHQQGQ 56 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 RSL R LS ++ F KYL + I + K LP+ L+ + L+D + Sbjct: 57 SSRSLARMLSAVRGFYKYLNREAICAHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGV- 115 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 E ++ R+ AIL L Y GLR+SE L + +++ GKG K R++P+ Sbjct: 116 ----EDDFLAHRDHAILELFYSSGLRLSELTGLNLDQLDLSDGLIQVLGKGSKTRVLPVG 171 Query: 204 PSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPLSTT 261 R+A+ + P N Q +F +GK L P Q ++ R LG L Sbjct: 172 SKARRALETW---LPLRALANPQDDAVFVTRQGKRLGPRAVQVRLKAAGERELGQNLHP- 227 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321 H LRHSFA+HLL + DLR++Q +LGH + TTQIYT+++ ++ + +YD HP Sbjct: 228 -HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATVYDNAHPRA 282 Query: 322 TQK 324 +K Sbjct: 283 KRK 285 >gi|149917823|ref|ZP_01906318.1| site-specific recombinase, phage integrase family protein [Plesiocystis pacifica SIR-1] gi|149821343|gb|EDM80745.1| site-specific recombinase, phage integrase family protein [Plesiocystis pacifica SIR-1] Length = 346 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 98/322 (30%), Positives = 163/322 (50%), Gaps = 32/322 (9%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L +L+ ER LS T ++Y D F+ + + + R L E+RA++++ Sbjct: 7 SFLVHLDKERRLSPNTCRAYARDIEGFIDNVEARRDRPAKL---RDLRLREVRAYLAELH 63 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 ++ ++ R LS +++F +Y ++ E+ + MR K LP AL + ++D Sbjct: 64 GKRAAS-TVGRKLSALRTFAEYCRREGWIAENEVALMRRPKLGRKLPVALPVEDLTEMID 122 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS------TLRI-QG 192 + R+ A+L +LYG GLR+SEA++L ++ + S TLR+ QG Sbjct: 123 G-----EQRPGAVGLRDRALLEVLYGAGLRVSEAVALNLADLRWEGSGDAARLTLRVLQG 177 Query: 193 KGDKIRIVPLLPSVRKAILEYYD-----LCPFD-------LNLNIQLPLFRGIRGKPLNP 240 KG+K R+VPL +A+ + D L P ++ +F G RG L+ Sbjct: 178 KGNKDRVVPLGRKGAEAMRAWLDTREGLLAPTPREGMRSPARIDAGKAVFLGARGGRLST 237 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 V + + + + G H LRHSFATHLL +G DLRSIQS+LGH LSTTQ YT+ Sbjct: 238 RVAREVVYRRCQASGARAVVGPHGLRHSFATHLLQSGCDLRSIQSMLGHASLSTTQRYTH 297 Query: 301 VNSKNGGDWMMEIYDQTHPSIT 322 ++ + + +Y++ HP + Sbjct: 298 LDMGH----LFSLYERAHPRAS 315 >gi|330984816|gb|EGH82919.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. lachrymans str. M301315] Length = 290 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 97/303 (32%), Positives = 150/303 (49%), Gaps = 21/303 (6%) Query: 24 NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83 +L ER +S TL++Y D + L + +K + + L +R+F +++ Q Sbjct: 2 HLRSERQVSPHTLEAYRRDLGKVLAYC-----QKAQLSSWNDLDIQHLRSFTARQHQQGQ 56 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 RSL R LS ++ F KYL + I M K LP+ L+ + L+D + Sbjct: 57 SSRSLARMLSAVRGFYKYLNREGICQHDPANGMSPPKGERRLPKTLDTDRTAQLLDGGV- 115 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 E ++ R+ AIL LLY GLR+SE L + +++ GKG K R++P+ Sbjct: 116 ----EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVG 171 Query: 204 PSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPLSTT 261 R+A LE + P N Q +F +GK L P Q ++ R LG L Sbjct: 172 SKARQA-LEIW--LPLRALTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGERELGQNLHP- 227 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321 H LRHSFA+HLL + DLR++Q +LGH + TTQIYT+++ ++ + +YD HP Sbjct: 228 -HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATVYDSAHPRA 282 Query: 322 TQK 324 +K Sbjct: 283 KRK 285 >gi|313204480|ref|YP_004043137.1| tyrosine recombinase xerd subunit [Paludibacter propionicigenes WB4] gi|312443796|gb|ADQ80152.1| tyrosine recombinase XerD subunit [Paludibacter propionicigenes WB4] Length = 302 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 92/281 (32%), Positives = 146/281 (51%), Gaps = 16/281 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFL--AFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 L++E+ LS T+ +YE D ++ ++L A E+ T + +R FI + + Sbjct: 12 LKLEKALSANTIDAYERDLQKLTVYLSEAHVKPEEATTEILRD--------FIIEISSLG 63 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 I RS R LS IKSF +L + + + + K LP L+ + +V + Sbjct: 64 IHPRSQARILSSIKSFYHFLIYKDVIDNDPTELLESPKTGLRLPEVLSLNEIDDIVSAID 123 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202 L +K RN AI+ +LYG GLR+SE + L + D+ + ++GKG K R+VP+ Sbjct: 124 L-----SKPEGQRNKAIIEVLYGSGLRVSELIGLQLSKMYMDEGYMLVEGKGSKQRLVPM 178 Query: 203 LPSVRKAI-LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 P K I L D D+ + LF RG L + + +++L G+ + + Sbjct: 179 SPQAMKQIELWKTDRNLLDIKKGNEDCLFLNRRGSKLTRDMIFKIVKELALLAGIRKNVS 238 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 HT RHSFATHLL NG +LR+IQ +LGH ++TT+IYT+++ Sbjct: 239 PHTFRHSFATHLLENGANLRAIQQLLGHESITTTEIYTHID 279 >gi|219871550|ref|YP_002475925.1| site-specific tyrosine recombinase XerD [Haemophilus parasuis SH0165] gi|219691754|gb|ACL32977.1| site-specific tyrosine recombinase XerD [Haemophilus parasuis SH0165] Length = 297 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 95/303 (31%), Positives = 153/303 (50%), Gaps = 18/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L E+GLS+ T+ SY D F +L+ ++ Y +++ F+ +R Sbjct: 9 EQFLDTLWQEQGLSENTVASYRLDLESFTQWLS-------EPNAFLKVDYVDLQTFLGER 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q S R LS ++ F ++L K + + + +K LP++L+E+Q L L Sbjct: 62 LEQGYKATSSSRMLSCLRKFFRFLYLEKYRDDDPTATLTSPRKPAHLPKSLSEEQVLDL- 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L+ + ++ R+ A+L LLY GLR++E +SLT N+ Q +RI GKGDK R Sbjct: 121 ----LNIPNTQDPLELRDKAMLELLYATGLRVTELVSLTLDNLSLRQGLVRIIGKGDKER 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL I ++++ L +Q + F G + F I+ G+ Sbjct: 177 LVPLGEEASYWIQQFFEYGRSSLLNGMQSDVVFPSRLGNQMTRQTFWHRIKHYALLAGID 236 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + + H LRH+FATHL+++G DLR +Q +LGH LSTTQIYT V + ++ Q Sbjct: 237 SNKLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTQVAKTR----LKSLHQQ 292 Query: 317 THP 319 HP Sbjct: 293 FHP 295 >gi|319937347|ref|ZP_08011754.1| site-specific tyrosine recombinase xerD [Coprobacillus sp. 29_1] gi|319807713|gb|EFW04306.1| site-specific tyrosine recombinase xerD [Coprobacillus sp. 29_1] Length = 301 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 93/306 (30%), Positives = 156/306 (50%), Gaps = 23/306 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + Q + +E+G S+ T+++YE D F+ F+ +K + + + + ++ K Sbjct: 8 KEYKQYMIVEKGYSRYTVENYERDILHFINFI----HKKYEVDNVNNVIKDHMYHYL-KD 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S+ R ++ +K F +L K I ++ + + KK+ LP L + L+ Sbjct: 63 LHNHLKASSVDRHMTSLKQFYIFLVKENIIKDNIMSSFEMSKKAKYLPEVLTVGEVNQLL 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D++ + + ARN ++ +LY GLR+SE LT QN+ + ++ GK +K R Sbjct: 123 DSIAV-----GDPVSARNRCMVEVLYASGLRVSEMCFLTLQNVNIHKGFVKCIGKRNKER 177 Query: 199 IVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 IVP+ + + EY + LC ++ Q LF RG+P+ F + + + Sbjct: 178 IVPMNENCCLLLKEYIEEYRPQLCE---EVSSQY-LFINKRGQPIQRDDFYHILENIVKK 233 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 GL T HTLRH+FATHLL N DLRSIQ +LGH +STT IYT+V++ +E Sbjct: 234 SGLKKHVTPHTLRHTFATHLLENDADLRSIQEMLGHSDISTTTIYTHVSNNKA----IEE 289 Query: 314 YDQTHP 319 Y + HP Sbjct: 290 YRKLHP 295 >gi|15834875|ref|NP_296634.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum Nigg] gi|34223084|sp|Q9PL53|XERD_CHLMU RecName: Full=Tyrosine recombinase xerD gi|7190294|gb|AAF39124.1| integrase/recombinase XerD [Chlamydia muridarum Nigg] Length = 301 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 96/299 (32%), Positives = 156/299 (52%), Gaps = 24/299 (8%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L ++RG++ L++Q+Y D FL +++ I+T ++ + F+ K K Sbjct: 19 LSVDRGIAPLSVQAYCQDILLFL--------QRVPIETTDMINQESVFLFVEKCHQAKES 70 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 + +L R L +K F +LK K+ + + + K LP L+ ++ +L+ N L+ Sbjct: 71 ETTLARRLIALKVFFHFLKDAKLIHQQPFIEHPKVWKR--LPSILSTEEVNSLL-NQPLN 127 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 T + +I R++AILY Y G+R+SE L +I DD +R+ GKG K R+VP+ Sbjct: 128 TLNLDAYIANRDTAILYTFYATGIRVSELCDLCIGDISDD--FIRVTGKGRKTRLVPISI 185 Query: 205 SVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 R+ I Y L F + P +F IRGK L + I + + Sbjct: 186 KARQTIDSY--LTMFRERFQKKNPSEEHVFLSIRGKKLERSCVWKRITFYAKLVTTK-HI 242 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H+LRH+FATHLL+N DLR IQ +LGH R+S+T+IYT+V S++ ++E + HP Sbjct: 243 SPHSLRHAFATHLLNNQADLRIIQEMLGHARISSTEIYTHVASES----IIEKFHTHHP 297 >gi|253700949|ref|YP_003022138.1| tyrosine recombinase XerD [Geobacter sp. M21] gi|251775799|gb|ACT18380.1| tyrosine recombinase XerD [Geobacter sp. M21] Length = 292 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 96/300 (32%), Positives = 150/300 (50%), Gaps = 18/300 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L +E+G + T+ +Y D ++L+FL E I+ I ++ F++K + Sbjct: 8 FLNYLLVEKGAAANTVAAYSRDLNRYLLFLG--EREPDGIRPI------DVTGFLAKLKG 59 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + I RS R+LS ++ ++L + + + K LP L+ ++ Sbjct: 60 EGIAPRSRARALSALRMLHRFLLREGYCELNPTAIVEAPKGVRKLPAVLSGREV-----E 114 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LL + H+T + R+ A+L LLY GLR+SE + L + L GKGDK R+V Sbjct: 115 ALLSSPHDTGAQELRDKAMLELLYATGLRVSELVGLKLGEVNLSAGYLMTIGKGDKERLV 174 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ S +A Y +L PL F G ++ F I++ G+ S Sbjct: 175 PIGESACRATGAYLQKARGELLKGKASPLLFLSRLGGGMSRQAFWNIIKKRALQAGVRAS 234 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRHSFATHLL NG DLRS+Q +LGH LS+TQIYT+V + M +++ + HP Sbjct: 235 ISPHTLRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVTRER----MKKLHAEFHP 290 >gi|254492686|ref|ZP_05105857.1| tyrosine recombinase XerD [Methylophaga thiooxidans DMS010] gi|224462207|gb|EEF78485.1| tyrosine recombinase XerD [Methylophaga thiooxydans DMS010] Length = 303 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 97/302 (32%), Positives = 154/302 (50%), Gaps = 16/302 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +L +L +E GLS+ T+++Y R L F A+ + + + Q +I+ + S+R Sbjct: 15 QPFLDSLWLEAGLSQNTVEAYR---RDLLAFAAWLAKLDVDLAAATQ---HDIQRYQSQR 68 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + RS R LS ++ F +YL + I + + + LP +L E+ Sbjct: 69 MREGRKVRSEARLLSTLRRFYRYLLREDIRDSDPTAQLESPRLGKPLPDSLTEQDV---- 124 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL T + R+ +L LLY GLR+SE + L + I Q +R GKG+K R Sbjct: 125 -EDLLAQPDITDLLGLRDRTMLELLYASGLRVSELVGLKQEQINMRQGLVRCIGKGNKER 183 Query: 199 IVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL + +Y Y+ P LN + +F RGK + F I++ + + Sbjct: 184 LVPLGEVALDWLQQYFYESRPGLLNGKVTDDVFPTRRGKAMTRQAFWYIIKRYAKQAQIQ 243 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + + +++ Q Sbjct: 244 KTLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKER----LKQLHGQH 299 Query: 318 HP 319 HP Sbjct: 300 HP 301 >gi|120436224|ref|YP_861910.1| tyrosine recombinase [Gramella forsetii KT0803] gi|117578374|emb|CAL66843.1| tyrosine recombinase [Gramella forsetii KT0803] Length = 298 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 97/311 (31%), Positives = 160/311 (51%), Gaps = 28/311 (9%) Query: 19 QNWLQN----LEIERGLSKLTLQSYECDTRQFLIFLAF----YTEEKITIQTIRQLSYTE 70 QN L++ L++ERGLS+ ++ +Y D + + +L + +KI+ + I++ Y+ Sbjct: 4 QNALKDYQYYLKLERGLSENSIANYSLDVIKLINYLDVNEIQISPDKISEKWIQEFIYS- 62 Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 +SK + RS R +SG++SF YL + + N +L +S + R L Sbjct: 63 ----VSK----DLNARSQSRLISGLRSFFSYL----LFEDYRKDNPLDLMESPKIGRKLP 110 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 + ++ VD ++ +K RN AI+ LYGCGLR+SE L ++ + +++ Sbjct: 111 DTISIAEVDKIIAAIDL-SKNEGERNRAIIETLYGCGLRVSELTDLKISDLFFKEGFIKV 169 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 GKGDK R VP+ K I Y D D+ LF RG L + ++ Sbjct: 170 TGKGDKQRFVPISEYTVKFINLYKDQVRNHQDIKPEATDTLFLNRRGNKLTRAMIFTIVK 229 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 +L G+ + HT RHSFATHLL NG DLR+IQ +LGH ++TT++Y +V+ + Sbjct: 230 KLTEVAGISKKVSPHTFRHSFATHLLENGADLRAIQQMLGHESITTTEVYVHVDRSH--- 286 Query: 309 WMMEIYDQTHP 319 + ++ +Q HP Sbjct: 287 -LRQVMEQFHP 296 >gi|308448796|ref|XP_003087755.1| hypothetical protein CRE_30625 [Caenorhabditis remanei] gi|308253057|gb|EFO97009.1| hypothetical protein CRE_30625 [Caenorhabditis remanei] Length = 543 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 93/324 (28%), Positives = 171/324 (52%), Gaps = 16/324 (4%) Query: 8 EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67 E++ + ++ W+++ +I+ S TL +Y D F+ F +++I + +Q+ Sbjct: 233 ELMQYGAMQLLSMWIKDRKIQNQ-SVHTLDAYFRDVSNFIDFC---YDKQIEL---KQVE 285 Query: 68 YTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126 ++R +++ R ++ SL+R L+ I+ F+K+ K+ + + + +++ LP Sbjct: 286 AADLREYVAYRVEKDQLSTSSLQRHLTSIRQFMKWAKQGGYLEINAADDFQIKRQARPLP 345 Query: 127 RALNEKQALTLVDNVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 ++ + ++D E + W+ R+ AIL LLY GLR++E SL ++I + Sbjct: 346 GMIDIETVNQIMDQPEPEKPIEKQLWL--RDKAILELLYSSGLRLAEVQSLAIRDIDFTR 403 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQ 244 LRI GKG+K RIVP R +++E+ + + + + +F RG ++P + Sbjct: 404 HLLRITGKGNKTRIVPFGSKARDSLIEWLKIYRIWQGEFSPESLVFITQRGTSISPRQIE 463 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 ++ G+ + H LRH FA+H+LSN GDLR++Q +LGH L+TTQIYT+V+ Sbjct: 464 NRVKYQALRAGVNVDLHPHLLRHCFASHMLSNSGDLRAVQEMLGHSNLTTTQIYTHVDF- 522 Query: 305 NGGDWMMEIYDQTHPSITQKDKKN 328 D + ++YDQ HP KN Sbjct: 523 ---DHLAQVYDQAHPRAAASKIKN 543 >gi|196047758|ref|ZP_03114951.1| tyrosine recombinase XerC [Bacillus cereus 03BB108] gi|196021406|gb|EDX60120.1| tyrosine recombinase XerC [Bacillus cereus 03BB108] Length = 299 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 91/311 (29%), Positives = 158/311 (50%), Gaps = 31/311 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q ++ L+IER SK T+ SY+ D F+ F+ E+ I + ++Y ++R +++ Sbjct: 8 QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDITYADVRLYLTTL 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137 +K+ +S+ R +S ++S ++L R+ + N + +L KK S+P+ L ++ Sbjct: 63 HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 118 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 L S + RN A+L L+Y G+R+SE ++L +I T+ + GKG K Sbjct: 119 --EELFEVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 176 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248 R +P + A++ Y + N QL +F +G PL + + Sbjct: 177 RYIPFGSYAQDALITYIE------NGRKQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLN 230 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 +L + L + + H LRH+FATH+L G DLR++Q +LGH LS TQIYT+V+ + Sbjct: 231 ELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSATQIYTHVSK----E 286 Query: 309 WMMEIYDQTHP 319 + +Y + HP Sbjct: 287 RLRSVYMKHHP 297 >gi|206890528|ref|YP_002247908.1| tyrosine recombinase XerD [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742466|gb|ACI21523.1| tyrosine recombinase XerD [Thermodesulfovibrio yellowstonii DSM 11347] Length = 294 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 104/310 (33%), Positives = 161/310 (51%), Gaps = 26/310 (8%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 E+LK+ N+L E+ LS T++SYE D + FL +L TE+ I + ++ +I Sbjct: 5 EILKKFLNYLLT---EKALSINTVKSYENDLKNFLKWL---TEQNILVLNCKK---DDIV 55 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 ++ + + S+ R LS +K F +++ I +++ K LP+AL Sbjct: 56 QYLLNLKEKAYSSTSIARILSSLKQFFRFMIFDSIINHDPTEGLKSPKLWLRLPKALE-- 113 Query: 133 QALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 +D V LL E+K+ R+ A+L L+Y GLR+SE + L +I + +R+ Sbjct: 114 -----IDEVKRLLSVMLESKYY-LRDIAMLELMYASGLRVSELVRLKLSDINFEAGFIRV 167 Query: 191 QGKGDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 +GKGDK R+VP+ I Y L P L +F RG+P+ F + I+ Sbjct: 168 KGKGDKERVVPIAQRSIDKIKNYLVKLRPVLLKKKASEYVFLNNRGQPMTRQRFWQNIKA 227 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 + R G+ + T H +RHSFATHLL G DLRS+Q +LGH +STTQIYT V+ D Sbjct: 228 IGRIAGV--NVTPHMIRHSFATHLLEGGADLRSLQKMLGHSDISTTQIYTKVSM----DR 281 Query: 310 MMEIYDQTHP 319 + + Y + HP Sbjct: 282 LRKEYLKHHP 291 >gi|330878502|gb|EGH12651.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 290 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 94/303 (31%), Positives = 149/303 (49%), Gaps = 21/303 (6%) Query: 24 NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83 +L ER +S TL++Y D + L F +K + + L +R+F +++ Q Sbjct: 2 HLRSERQVSPHTLEAYRRDLSKVLTFC-----QKAQLSSWNDLDIQHLRSFTARQHQQGQ 56 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 RSL R LS ++ F KYL + + + K LP+ L+ + L+D + Sbjct: 57 SSRSLARMLSAVRGFYKYLNREGLCQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGV- 115 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 E ++ R+ AI+ LLY GLR+SE L + +++ GKG K R++P+ Sbjct: 116 ----EDDFLAHRDQAIMELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVG 171 Query: 204 PSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPLSTT 261 R+A+ + P N Q +F +GK L P Q I+ R LG L Sbjct: 172 SKARQALETW---LPLRALTNPQDDAVFVSQQGKRLGPRAVQLRIKTAGERELGQNLH-- 226 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321 H LRHSFA+HLL + DLR++Q +LGH + TTQIYT+++ ++ + +YD HP Sbjct: 227 PHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATVYDSAHPRA 282 Query: 322 TQK 324 +K Sbjct: 283 KRK 285 >gi|325576773|ref|ZP_08147388.1| site-specific tyrosine recombinase XerC [Haemophilus parainfluenzae ATCC 33392] gi|325160979|gb|EGC73097.1| site-specific tyrosine recombinase XerC [Haemophilus parainfluenzae ATCC 33392] Length = 295 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 98/301 (32%), Positives = 151/301 (50%), Gaps = 19/301 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L IER LS TL +Y+ L LA EK IQ +Q++ + +R +++ R + Sbjct: 12 LRIERQLSPHTLTNYQHQLNAILAILA----EK-GIQHWQQVNPSVVRLILAESRKHGLK 66 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 ++SL LS ++ F YL + + + K+S LP+ ++ +Q L+ N Sbjct: 67 EKSLALRLSALRQFFSYLVHQGQMKVNPATGISAPKQSKHLPKNIDAEQVQKLLSN---- 122 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 ID R+ A++ L+Y GLR+SE L +I +R+ GKG+K RIVP Sbjct: 123 --DSKDPIDLRDRAMMELMYSSGLRLSELQGLNLNSINTRVREVRVIGKGNKERIVPFGR 180 Query: 205 SVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 AI ++ + P F+ + +F +G L Q+ + GL H Sbjct: 181 YASHAIQQWLKVRPLFNPKDD---AIFVSQQGNRLTHRSIQKRMENWGIRQGLNSHLNPH 237 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323 LRHSFATH+L DLR++Q +LGH LSTTQIYT++N ++ + E+YDQ HP + Sbjct: 238 KLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEVYDQAHPRAKR 293 Query: 324 K 324 K Sbjct: 294 K 294 >gi|319791651|ref|YP_004153291.1| integrase family protein [Variovorax paradoxus EPS] gi|315594114|gb|ADU35180.1| integrase family protein [Variovorax paradoxus EPS] Length = 317 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 94/317 (29%), Positives = 155/317 (48%), Gaps = 29/317 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+++ +ER L+ T++ Y + A +QT IR +++K + Sbjct: 19 YLEHVRVERRLAARTVELYAFHLQALRENAAEANLPLDRVQT------AHIRRWMAKLHS 72 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 R + LS +SF ++L + + + ++ K LP+AL A+ L + Sbjct: 73 AGREPRGIALVLSCWRSFYRWLGHEGLIGFNPVQDVHAPKAGRPLPKALGVDDAVQLAE- 131 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ------NIMD-DQSTLRIQGK 193 LH WI+AR+ AI+ +LYGCGLR+SE L Q +D D + GK Sbjct: 132 --LHDEDADPWIEARDRAIVEILYGCGLRVSELTGLDAQASNTALGWVDLDAKEANVLGK 189 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRR 252 G K RIVP+ +A+ E+ D+ + +P LF +G ++ + +R+ Sbjct: 190 GSKRRIVPVGSKAAEALQEW-----LDVRGDRSVPALFVSSKGARMSSQAVWKLLRERSL 244 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 GL H LRHSFA+H+L + DLR++Q +LGH ++TTQIYT ++ ++ + + Sbjct: 245 KAGLAAPVHPHMLRHSFASHVLQSSSDLRAVQELLGHANIATTQIYTRLDFQH----LAK 300 Query: 313 IYDQTHP---SITQKDK 326 YD HP + T KDK Sbjct: 301 AYDAAHPRAKARTDKDK 317 >gi|154686030|ref|YP_001421191.1| site-specific tyrosine recombinase XerC [Bacillus amyloliquefaciens FZB42] gi|154351881|gb|ABS73960.1| CodV [Bacillus amyloliquefaciens FZB42] Length = 305 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 88/302 (29%), Positives = 152/302 (50%), Gaps = 17/302 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +++ L+IE+ S+ T+ +Y +F +FL I +++ +Y ++R F+++ Sbjct: 12 FVEYLQIEKNYSQYTIVNYVNSIEEFGMFL-----HAQNINGMKEAAYHDVRIFLTEAYE 66 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + +++ + +S ++SF K+L + K+ E+ + K+ +P+ L EK+ Sbjct: 67 KGLSRKTISKKISALRSFYKFLMREKLVEENPFQLVHLPKQEKRIPKFLYEKEL-----E 121 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 L S ++ R+ A+L LLY G+R+SE +LT ++ T+ + GKG K R + Sbjct: 122 ELFAVSDRSQPSGMRDQALLELLYATGMRVSECCTLTVGDLDLFMDTVLVHGKGKKQRYI 181 Query: 201 PLLPSVRKAILEYYD---LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 P R A+ Y + C + LF RG PL + + L + Sbjct: 182 PFGSYARDALELYINSGRQCLLEKAKEPHDVLFVNQRGGPLTARGIRYILSGLVKKASGT 241 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 L H LRH+FATHLL+ G DLRS+Q +LGH LS+TQIYT+V+ + + Y Sbjct: 242 LHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSK----EMLRNTYMSH 297 Query: 318 HP 319 HP Sbjct: 298 HP 299 >gi|92115127|ref|YP_575055.1| tyrosine recombinase XerD subunit [Chromohalobacter salexigens DSM 3043] gi|91798217|gb|ABE60356.1| tyrosine recombinase XerD subunit [Chromohalobacter salexigens DSM 3043] Length = 295 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 98/306 (32%), Positives = 148/306 (48%), Gaps = 17/306 (5%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 L+ R +L L +ERGLS+ TL +Y D +L LA + + F Sbjct: 4 LEWRDAFLDGLWLERGLSQHTLAAYRRDLDAWLAHLAARG------ACLMAPDEQALETF 57 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 ++ RR + RS+ R LS ++ F ++ + + + R + LP L+E + Sbjct: 58 LAARR-EHYHPRSVARLLSCLRRFYRWALAEGHVSVDPLADARAPRAVTKLPDTLDEAE- 115 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 V+ +L E + R+ +L +LYGCGLR+SE + LT + Q LR+ GKG Sbjct: 116 ---VERLLAAPDVELP-LGLRDRTMLEVLYGCGLRVSELVGLTVDAVNLRQGVLRVLGKG 171 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 DK R+VPL + Y DL + + PLF G + F I++ Sbjct: 172 DKERLVPLGEEATAWLARYLRQGRGDLMQDPTRPPLFPGRHDGFMTRQTFWHRIKRHAVS 231 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ + HTLRH+FATHLL++G +LR +Q +LGH LSTTQIYT V + + Sbjct: 232 AGIDKPLSPHTLRHAFATHLLNHGANLRVVQMLLGHSDLSTTQIYTQVAQAR----LEAL 287 Query: 314 YDQTHP 319 + Q HP Sbjct: 288 HAQHHP 293 >gi|320354502|ref|YP_004195841.1| tyrosine recombinase XerC [Desulfobulbus propionicus DSM 2032] gi|320123004|gb|ADW18550.1| tyrosine recombinase XerC [Desulfobulbus propionicus DSM 2032] Length = 303 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 87/313 (27%), Positives = 156/313 (49%), Gaps = 24/313 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +++ L +E+G S T Y+ D +F F + + ++ + ++AF+ Sbjct: 6 ERFVRWLLVEKGYSPHTADGYQRDLLEFQRFCG-------GVLSPESITSSLVQAFVGSL 58 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S+ R LS +++F ++L + K+ + + K ++LP L + +L+ Sbjct: 59 YASN-ASASVARKLSALRTFFRFLLREKVIESDPVAGIVGPKLGHALPAFLTVDEVFSLL 117 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + + + W R+ A++ +LY G+R++E + +++ +R++GKG K R Sbjct: 118 ETP---ATSDRYW--RRDRAVMEVLYATGMRVAELVGCNREDVDLAAEMVRVRGKGRKER 172 Query: 199 IVPLLPSVRKAILEYYD----LCPFDLNLN---IQLPLFRGIRGKPLNPGVFQRYIRQLR 251 +VP + +A+ +Y LC + Q LF RG L+ +R I+ Sbjct: 173 LVPFGRAAHEALEQYLPEREALCIARVQRGRKPEQRALFLNGRGTRLSARSVERSIQTYA 232 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 G+ ++ T H LRHSFATHLL G DLR++Q +LGH LSTTQ YT++N D + Sbjct: 233 LRAGIGVTVTPHALRHSFATHLLEMGADLRTVQELLGHVSLSTTQKYTHINI----DHLS 288 Query: 312 EIYDQTHPSITQK 324 ++YDQ HP +K Sbjct: 289 KVYDQAHPQAQKK 301 >gi|301155134|emb|CBW14598.1| site-specific tyrosine recombinase [Haemophilus parainfluenzae T3T1] Length = 295 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 98/301 (32%), Positives = 152/301 (50%), Gaps = 19/301 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L IER +S TL +Y+ L LA EK IQ +Q++ + +R +++ R Q + Sbjct: 12 LRIERQVSPHTLTNYQHQLDAILAILA----EK-GIQHWQQVNPSVVRLILAESRKQGLK 66 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 ++SL LS ++ F YL ++ + + K+ LP+ ++ +Q L+ N Sbjct: 67 EKSLALRLSALRQFFSYLVQQGQMKVNPATGISAPKQGKHLPKNIDAEQVQKLLSN---- 122 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 ID R+ A++ L+Y GLR+SE L +I +R+ GKG+K RIVP Sbjct: 123 --DSKDPIDLRDRAMMELMYSSGLRLSELQGLNLNSINTRVREVRVIGKGNKERIVPFGR 180 Query: 205 SVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 AI ++ + P F+ + LF +G L Q+ + GL H Sbjct: 181 YASHAIQQWLKVRPLFNPKDD---ALFVSQQGNRLTHRSIQKRMETWGIRQGLNSHLNPH 237 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323 LRHSFATH+L DLR++Q +LGH LSTTQIYT++N ++ + E+YDQ HP + Sbjct: 238 KLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEVYDQAHPRAKR 293 Query: 324 K 324 K Sbjct: 294 K 294 >gi|91781471|ref|YP_556677.1| site-specific tyrosine recombinase XerC [Burkholderia xenovorans LB400] gi|91685425|gb|ABE28625.1| Putative integrase/recombinase [Burkholderia xenovorans LB400] Length = 307 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 89/316 (28%), Positives = 155/316 (49%), Gaps = 29/316 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L NLE ER LS TL+ Y + + + + + LS +IR +S+ Sbjct: 10 YLSNLEHERRLSAHTLRGYTHELEELKLL--------AKGRPLESLSAVDIRGAVSRAHA 61 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS+ LS ++F ++L R + + +R K+ +LP+AL+ A L+++ Sbjct: 62 GGLTARSISHRLSAWRAFYRWLAGRVDLPANPVATVRAPKQPKTLPKALSVDDATRLMES 121 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-----------IMDDQSTLR 189 + R+ A+L L Y GLR++E + L + I D + + Sbjct: 122 PPAASPEGL-----RDHAMLELFYSSGLRLAELVGLDARFADADGYRSAGWIKLDSAEVE 176 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 + GKG++ R+VP+ S L + + + PLF RG L+P V + +++ Sbjct: 177 VLGKGNRRRVVPV-GSKALEALAAWLAVRDQMVKHDPHPLFLSARGNRLSPNVVRERVKR 235 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 G+P + H LRHSFATH+L + GDLR++Q +LGH ++ TQ+YT ++ ++ Sbjct: 236 AALVAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTALDFQH---- 291 Query: 310 MMEIYDQTHPSITQKD 325 + +YDQ HP ++D Sbjct: 292 LAHVYDQAHPRAKKRD 307 >gi|227504282|ref|ZP_03934331.1| site-specific tyrosine recombinase XerD [Corynebacterium striatum ATCC 6940] gi|227199121|gb|EEI79169.1| site-specific tyrosine recombinase XerD [Corynebacterium striatum ATCC 6940] Length = 298 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 93/302 (30%), Positives = 148/302 (49%), Gaps = 14/302 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q WL +L +E+G S TL +Y D R++L +LA I + + + ++ Sbjct: 8 QTWLNHLAVEKGASANTLSNYRRDVRRYLGWLA-----DNGIDDLADVDRGMVEEYLKFL 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + + + + K+ + + K + LP L + L+ Sbjct: 63 RGGLAAASASRALIVA-RGLHKFGVAEGVLDVDVAGEVAPPKNAAHLPETLRVDEVEKLI 121 Query: 139 DNVLLHTSHETKW-IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 D+V ET ID R+ A+L +LYG G RISE ++L+ ++ D+ L + GKG+K Sbjct: 122 DSV---PDGETATPIDIRDRALLEMLYGTGARISEVIALSVDDMSDNDGILVLTGKGNKQ 178 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 R+VP+ +KA+ EY L+ LF RG L+ ++ + GL Sbjct: 179 RMVPVGSQAQKAVEEYLVRARPVLSKGKSHALFLNTRGGALSRQSAWAALKLAVQRAGLN 238 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 S + HTLRHSFATHLL G D+R++Q +LGH ++TTQIYT+V + D + E++ Sbjct: 239 KSISPHTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTA----DSLREVWRTA 294 Query: 318 HP 319 HP Sbjct: 295 HP 296 >gi|116671017|ref|YP_831950.1| tyrosine recombinase XerC subunit [Arthrobacter sp. FB24] gi|116611126|gb|ABK03850.1| tyrosine recombinase XerC subunit [Arthrobacter sp. FB24] Length = 308 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 95/323 (29%), Positives = 160/323 (49%), Gaps = 21/323 (6%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE---EK 57 M+ +LP L + + + LE ER S T+++Y D L A + Sbjct: 1 MDTPDLPPA----LADAARGFGRYLEGERARSPHTVRAYLSDVHSLLTVAAADGATDLDG 56 Query: 58 ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117 I + T+R+ + A +S+ +L R + +SF + + ++ L ++ Sbjct: 57 IELATLRRWLGAQSEARMSRS--------TLARRAATARSFTSWAVREELLGSDPALRLK 108 Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 K+ SLP L+++Q L +VD+ L + + + R+ A++ LLY G+R+ E + Sbjct: 109 APKRERSLPGVLHQQQVLRVVDH-LKAAAEDGGPLALRDRAMVELLYATGVRVGELAGMD 167 Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGK 236 ++ D+ TLR+ GKG+K R VP A+ ++ L ++ P LF G RG+ Sbjct: 168 VDDLDPDRRTLRVVGKGNKERTVPYGLPAAVAVDDWLRRGRPVLAVDGSGPALFLGARGR 227 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 ++ + ++ + LG +T H LRHS ATHLL G DLR++Q ILGH L+TTQ Sbjct: 228 RVDQRQVRTVVKDVLDALGDTAATGPHALRHSAATHLLDGGADLRAVQEILGHSSLATTQ 287 Query: 297 IYTNVNSKNGGDWMMEIYDQTHP 319 IYT+V+ + + + Y Q HP Sbjct: 288 IYTHVSVER----LRQSYQQAHP 306 >gi|73748515|ref|YP_307754.1| tyrosine recombinase XerC [Dehalococcoides sp. CBDB1] gi|147669296|ref|YP_001214114.1| tyrosine recombinase XerC subunit [Dehalococcoides sp. BAV1] gi|289432563|ref|YP_003462436.1| tyrosine recombinase XerC [Dehalococcoides sp. GT] gi|73660231|emb|CAI82838.1| tyrosine recombinase XerC [Dehalococcoides sp. CBDB1] gi|146270244|gb|ABQ17236.1| tyrosine recombinase XerC subunit [Dehalococcoides sp. BAV1] gi|288946283|gb|ADC73980.1| tyrosine recombinase XerC [Dehalococcoides sp. GT] Length = 307 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 97/310 (31%), Positives = 155/310 (50%), Gaps = 35/310 (11%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ L +E+ +S TL++Y D + F+ + E+K++ + ++ +R ++S Sbjct: 8 YLEYLSVEKNVSPYTLRNYRTD---LIGFVNYLIEKKVS--SFDRVDRYILRDYMSSLIA 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + I S+ R LS ++SF +YL + + ++ LN + + LP L + N Sbjct: 63 KGIVKGSIARKLSAVRSFYRYLMREGLIQKNPTLNASSPRLDKRLPEFLTVTEV-----N 117 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LL + R+ A + LLY GLR+SE + L +N+ +R+ GKG K R+V Sbjct: 118 KLLRVPDSSTPQGLRDKAFMELLYASGLRVSELVKLDIENMDLHSHQIRVWGKGSKERVV 177 Query: 201 -PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP---LNPG-------VFQRYIRQ 249 LP++ ++I Y LN+ PL +G R P LNP FQ + + Sbjct: 178 LAGLPAI-QSIQNY---------LNLGRPLLKGKRNTPALFLNPTGGRLSARSFQERLDK 227 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 L + G+ H LRH+FATHLL G DLR +Q +LGH LSTTQIYT+V Sbjct: 228 LAKQAGIEKHVHPHMLRHTFATHLLDGGADLRVVQELLGHSNLSTTQIYTHVTKSQA--- 284 Query: 310 MMEIYDQTHP 319 ++Y +HP Sbjct: 285 -RKVYMSSHP 293 >gi|119776379|ref|YP_929119.1| integrase/recombinase XerC [Shewanella amazonensis SB2B] gi|171704602|sp|A1SAP3|XERC_SHEAM RecName: Full=Tyrosine recombinase xerC gi|119768879|gb|ABM01450.1| integrase/recombinase XerC [Shewanella amazonensis SB2B] Length = 296 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 95/322 (29%), Positives = 163/322 (50%), Gaps = 40/322 (12%) Query: 15 LKERQNWLQN----LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI---QTIRQLS 67 + ++ +WL+ L ER LS +T+++Y F E T+ ++ +QLS Sbjct: 1 MADQASWLERFTRYLATERQLSPMTVRNYR-----------FELERADTLLGQRSWQQLS 49 Query: 68 YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127 ++ +++ Q + RSL + S +K F ++L K + + + K+S +LP+ Sbjct: 50 RQDLSGLMARLHRQGLSPRSLSLTASALKQFGQFLLKEGLIDTNPAATLSAPKQSKTLPK 109 Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 L+ N LL E + R+ AI+ L Y CGLR++E +L +++ + Sbjct: 110 NLDPDSV-----NHLLDIPPEDG-LALRDKAIMELFYSCGLRLAELAALDVKDLDRESRE 163 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGV 242 +R+ GKG K RI+P+ AI ++ L + Q+P LF RG L+ Sbjct: 164 VRVIGKGSKERILPVGSVALAAIGDW-------LKVRNQMPCQDDALFVSSRGSRLSHRS 216 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 Q + + + GL + H LRHSFATH+L + GDLR++Q +LGH L+TTQIYT+++ Sbjct: 217 IQARMEKWAQIQGLSVGVHPHKLRHSFATHMLESSGDLRAVQELLGHANLATTQIYTSLD 276 Query: 303 SKNGGDWMMEIYDQTHPSITQK 324 ++ + ++YD HP +K Sbjct: 277 FQH----LAKVYDGAHPRARKK 294 >gi|330828608|ref|YP_004391560.1| Tyrosine recombinase XerD [Aeromonas veronii B565] gi|328803744|gb|AEB48943.1| Tyrosine recombinase XerD [Aeromonas veronii B565] Length = 303 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 91/302 (30%), Positives = 156/302 (51%), Gaps = 16/302 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ERGLS T+ SY D +F ++L +E+ + ++ EI+ +++ R Sbjct: 15 EPFLDALWLERGLSDNTVSSYRSDLEKFSLWL----DEQGS--SLLLAGMDEIQHYLAWR 68 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S R LS ++ F +YL + K+ ++ + + K LP L+E + L+ Sbjct: 69 VDHQFAASSTARFLSALRRFYQYLNREKLRSDDPTVLLEGPKLPKKLPSDLSETEVEALL 128 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L+ ++ R+ A+L LLY GLR+SE + LT +++ Q +R+ GKG+K R Sbjct: 129 SAPLVDDP-----LELRDKAMLELLYATGLRVSELVGLTAEHVSLRQGLVRVVGKGNKER 183 Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ + YY + L +F + + + F I+ G+ Sbjct: 184 LVPMGEEAMHWLERYYREARTLLLGGTSSDVVFPSKQARMMTRQTFWHRIKLYALRAGIN 243 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + ++ + Sbjct: 244 GELSPHTLRHAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVANER----LKALHGEH 299 Query: 318 HP 319 HP Sbjct: 300 HP 301 >gi|16078677|ref|NP_389496.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp. subtilis str. 168] gi|221309489|ref|ZP_03591336.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp. subtilis str. 168] gi|221313814|ref|ZP_03595619.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318738|ref|ZP_03600032.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp. subtilis str. JH642] gi|221323009|ref|ZP_03604303.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp. subtilis str. SMY] gi|321315380|ref|YP_004207667.1| site-specific tyrosine recombinase XerC [Bacillus subtilis BSn5] gi|729174|sp|P39776|XERC_BACSU RecName: Full=Tyrosine recombinase xerC gi|535348|gb|AAB03369.1| CodV [Bacillus subtilis subsp. subtilis str. JH642] gi|2633986|emb|CAB13487.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus subtilis subsp. subtilis str. 168] gi|320021654|gb|ADV96640.1| site-specific tyrosine recombinase XerC [Bacillus subtilis BSn5] Length = 304 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 90/308 (29%), Positives = 155/308 (50%), Gaps = 17/308 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +++ L+IE+ S+ T+ +Y +F FL I + +Y + R F+++ Sbjct: 11 FVEYLQIEKNYSQYTIVNYVDSIEEFETFLRVQG-----INGFEEAAYQDTRIFLTEAYE 65 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + R++ + +S ++SF K+L + K+ E+ + K+ +P+ L +K+ L + Sbjct: 66 KGLSRRTISKKISALRSFYKFLMREKLIEENPFQLVHLPKQEKRIPKFLYQKELEELFE- 124 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 S ++ R+ A+L LLY G+R+SE S+T ++ T+ + GKG K R + Sbjct: 125 ----VSDISQPAGMRDQALLELLYATGMRVSECCSITINDVDLFMDTVLVHGKGKKQRYI 180 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 P R+A+ Y + L + + P LF RG PL + + L + Sbjct: 181 PFGSYAREALKVYMNSGRQCLLMKAKEPHDLLFVNQRGGPLTARGIRHILSGLVQKASST 240 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 L H LRH+FATHLL+ G DLRS+Q +LGH LS+TQIYT+V+ + + Y Sbjct: 241 LHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSK----EMLRNTYMSH 296 Query: 318 HPSITQKD 325 HP +K+ Sbjct: 297 HPRAFKKN 304 >gi|167856576|ref|ZP_02479280.1| tyrosine recombinase XerD [Haemophilus parasuis 29755] gi|167852293|gb|EDS23603.1| tyrosine recombinase XerD [Haemophilus parasuis 29755] Length = 297 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 95/303 (31%), Positives = 152/303 (50%), Gaps = 18/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L E+GLS+ T+ SY D F +L+ ++ Y +++ F+ +R Sbjct: 9 EQFLDTLWQEQGLSENTVASYRLDLESFTQWLS-------EPNAFLKVDYVDLQTFLGER 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q S R LS ++ F ++L K + + + +K LP++L+E+Q L L Sbjct: 62 LEQGYKATSSSRMLSCLRKFFRFLYLEKYRDDDPTATLTSPRKPAHLPKSLSEEQVLDL- 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L+ ++ R+ A+L LLY GLR++E +SLT N+ Q +RI GKGDK R Sbjct: 121 ----LNIPDTQDPLELRDKAMLELLYATGLRVTELVSLTLDNLSLRQGLVRIIGKGDKER 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL I ++++ L +Q + F G + F I+ G+ Sbjct: 177 LVPLGEEASYWIQQFFEYGRSSLLNGMQSDVVFPSRLGNQMTRQTFWHRIKHYALLAGID 236 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + + H LRH+FATHL+++G DLR +Q +LGH LSTTQIYT V + ++ Q Sbjct: 237 SNKLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTQVAKTR----LKSLHQQ 292 Query: 317 THP 319 HP Sbjct: 293 FHP 295 >gi|91792109|ref|YP_561760.1| tyrosine recombinase XerD [Shewanella denitrificans OS217] gi|91714111|gb|ABE54037.1| Tyrosine recombinase XerD [Shewanella denitrificans OS217] Length = 303 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 101/300 (33%), Positives = 147/300 (49%), Gaps = 16/300 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L +GLS TL SY D R F +LA +++ + Q +R +++ R+ Sbjct: 17 FLDALWSSKGLSNNTLASYGTDLRHFQRYLA---AQQLNLLDASQ---ETVRQYLAWRQE 70 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q S R +S ++ F Y K + + K S LP AL+E + VD Sbjct: 71 QGFAKSSSARLMSSLRRFYAYWLSLKRIAIDPCAKLASPKLSRGLPAALSEAE----VDA 126 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 +L + + I+ R+ A+L LLY GLR++E +SLT I Q +RI GKG K R+V Sbjct: 127 LLSEPAADDP-IEIRDKAMLELLYATGLRVTELVSLTMDQISLRQGLVRITGKGGKERLV 185 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 PL + Y L +L Q LF RG + F I+ + Sbjct: 186 PLGELAVAEVDTYLSLARSELLKGKQSEVLFPSKRGTMMTRQTFWHRIKHYALRASIATE 245 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + +++ Q HP Sbjct: 246 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKAR----LQDLHRQHHP 301 >gi|85712976|ref|ZP_01044015.1| Site-specific recombinase [Idiomarina baltica OS145] gi|85693214|gb|EAQ31173.1| Site-specific recombinase [Idiomarina baltica OS145] Length = 301 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 94/301 (31%), Positives = 152/301 (50%), Gaps = 15/301 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + ++++L + G+S+ T +Y D ++F FLA + ++ + Q++ T ++ ++ R Sbjct: 14 EQFVEHLWLAHGVSENTQAAYRSDLKKFCEFLA---QHRLGLH---QVTSTVVQDYLLWR 67 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R+Q + RS R LS +K Y K I ++ K S ++P +L E L+L+ Sbjct: 68 RSQGLSPRSTSRFLSAMKKLTPYALKSGWFVTDPIAKLKRPKMSPAVPHSLTESDVLSLL 127 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + T I R+ A+L +LY GLR++E + L + Q +R+ GKGDK R Sbjct: 128 DAPDVDTP-----IGLRDRAMLEVLYATGLRVTELVRLQYDQVSLAQGLVRVVGKGDKER 182 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +VPL + + Y L+ +F RG L F IR + Sbjct: 183 LVPLGEEAIEWLSRYMKSGRPVLSERQSGWVFITQRGTLLTRQAFWYRIRTYAEQAQINS 242 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT V + + +++ H Sbjct: 243 HLSPHTLRHAFATHLLNHGADLRVLQMLLGHSDLSTTQIYTQVAKER----LQQMHATFH 298 Query: 319 P 319 P Sbjct: 299 P 299 >gi|315223453|ref|ZP_07865310.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287] gi|314946626|gb|EFS98617.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287] Length = 307 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 93/299 (31%), Positives = 147/299 (49%), Gaps = 15/299 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L IE S T+++Y+ D R F F+ EEK + Q +I+ +I + I Sbjct: 10 LSIEMKYSDHTVEAYKHDLRSFEKFIKSLYEEKGEDCCLEQADQEDIKKWIIHLSDETIS 69 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITT----ESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 RS+ R LS +K++ +LKK K E I ++ KK + LP + E ++ Sbjct: 70 FRSINRKLSALKTYYNFLKKTKQIEISPFEKGIFLLKTEKK-HKLPFSEAE------IEK 122 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 VL S + + + RN A++ LY G+R SE L ++ +Q +++ GKGDK R + Sbjct: 123 VLSFFSSKDSFDEVRNRAVIETLYATGIRRSELSGLKVSDVDFEQKQIKVLGKGDKERYI 182 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 P++P + + EY L N Q LF GK + + R I + Sbjct: 183 PIIPELENTLKEYLVLREEVKNEKSQDYLFLVKNGKKIYSTLVYRIINSYFSVVTTKKDV 242 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H LRHSFA+HLL NG DL +++ +LGH L++TQ+YTN + + + Y + HP Sbjct: 243 SPHVLRHSFASHLLDNGADLYTVKELLGHSSLASTQVYTNTSLAE----LKKQYKKAHP 297 >gi|229047517|ref|ZP_04193107.1| Tyrosine recombinase xerC [Bacillus cereus AH676] gi|228723764|gb|EEL75119.1| Tyrosine recombinase xerC [Bacillus cereus AH676] Length = 299 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 89/308 (28%), Positives = 163/308 (52%), Gaps = 25/308 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q ++ L+IER SK T+ SY+ D F+ F+ E+ I + ++Y ++R +++ Sbjct: 8 QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYLTTL 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137 +K+ +S+ R +S ++S ++L R+ + N + +L KK S+P+ L ++ L Sbjct: 63 HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEELEEL 121 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 + + T + RN A+L L+Y G+R+SE ++L +I T+ + GKG K Sbjct: 122 FEVSDMETP-----LGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 176 Query: 198 RIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 R +P + +++ Y + + D + ++ +F +G PL + + +L Sbjct: 177 RYIPFGSYAQDSLITYIENGRKQLVNKTDEDSHM---VFLNAKGTPLTSRGVRYVLNELI 233 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 + L + + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ + + Sbjct: 234 KKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----ERLR 289 Query: 312 EIYDQTHP 319 +Y + HP Sbjct: 290 SVYMKHHP 297 >gi|87307014|ref|ZP_01089160.1| integrase/recombinase [Blastopirellula marina DSM 3645] gi|87290387|gb|EAQ82275.1| integrase/recombinase [Blastopirellula marina DSM 3645] Length = 300 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 89/301 (29%), Positives = 148/301 (49%), Gaps = 14/301 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ L +ER S LT++SY D + +L E + ++S ++R +++ Sbjct: 8 FLRYLRVERNASDLTIKSYGEDLEALVDYL---EELYAAPASTGEVSTLDLRGYVAAVSD 64 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + ++ R L+ ++SF ++ ++ ++ S +RN ++ LP L + L+ Sbjct: 65 AGYAETTVSRRLASMRSFFRFAQREELIDRSPAKPLRNPRRKRKLPHFLTGDEISKLLSA 124 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 +TS R+ AI Y GLR+SE + L +I +Q +RI+GKG + R+ Sbjct: 125 PPANTS-----AGLRDRAIFETTYSAGLRVSELVGLNDSDIDAEQGLIRIRGKGKRERLG 179 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 PL KA+ ++ + P+F G L R + + GL Sbjct: 180 PLGSYAIKALHDWLSQRTLSARAAAAKEKPVFTNKFGNRLTTRSVGRMLEKYIAIAGLDT 239 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 T+ HTLRHSFATHLL G D+RS+Q +LGH L TTQIYT+V++ + E Y++ H Sbjct: 240 RTSPHTLRHSFATHLLDAGADIRSVQELLGHKSLVTTQIYTHVSTTR----LKEAYEKAH 295 Query: 319 P 319 P Sbjct: 296 P 296 >gi|320326565|gb|EFW82616.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. glycinea str. B076] gi|320331369|gb|EFW87310.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. glycinea str. race 4] gi|330881323|gb|EGH15472.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. glycinea str. race 4] Length = 299 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 96/306 (31%), Positives = 151/306 (49%), Gaps = 21/306 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 + +L ER +S TL++Y D + L + +K + + L +R+F +++ Sbjct: 8 YCMHLRSERQVSPHTLEAYRRDLSKVLAYC-----QKAQLSSWNDLDIQHLRSFTARQHQ 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q RSL R LS ++ F KYL + I + K LP+ L+ + L+D Sbjct: 63 QGQSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRTAQLLDG 122 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + E ++ R+ AIL LLY GLR+SE L + +++ GKG K R++ Sbjct: 123 GV-----EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVL 177 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPL 258 P+ R+A LE + P N Q +F +GK L P Q ++ R LG L Sbjct: 178 PVGSKARQA-LEIW--LPLRALTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGERELGQNL 234 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 H LRHSFA+HLL + DLR++Q +LGH + TTQIYT+++ ++ + +YD H Sbjct: 235 HP--HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATVYDSAH 288 Query: 319 PSITQK 324 P +K Sbjct: 289 PRAKRK 294 >gi|218235700|ref|YP_002368632.1| site-specific tyrosine recombinase XerC [Bacillus cereus B4264] gi|229111302|ref|ZP_04240855.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-15] gi|229129107|ref|ZP_04258080.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-Cer4] gi|229146402|ref|ZP_04274773.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST24] gi|229152030|ref|ZP_04280225.1| Tyrosine recombinase xerC [Bacillus cereus m1550] gi|296504326|ref|YP_003666026.1| site-specific tyrosine recombinase [Bacillus thuringiensis BMB171] gi|218163657|gb|ACK63649.1| tyrosine recombinase XerC [Bacillus cereus B4264] gi|228631379|gb|EEK88013.1| Tyrosine recombinase xerC [Bacillus cereus m1550] gi|228637035|gb|EEK93494.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST24] gi|228654344|gb|EEL10209.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-Cer4] gi|228672078|gb|EEL27369.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-15] gi|296325378|gb|ADH08306.1| site-specific tyrosine recombinase [Bacillus thuringiensis BMB171] Length = 299 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 89/308 (28%), Positives = 161/308 (52%), Gaps = 25/308 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q ++ L+IER SK T+ SY+ D F+ F+ E+ I + ++Y ++R +++ Sbjct: 8 QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYLTTL 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137 +K+ +S+ R +S ++S ++L R+ + N + +L KK S+P+ L ++ Sbjct: 63 HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 118 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 L S + RN A+L L+Y G+R+SE ++L +I T+ + GKG K Sbjct: 119 --EELFEVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 176 Query: 198 RIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 R +P + +++ Y + + D + ++ +F +G PL + + +L Sbjct: 177 RYIPFGSYAQDSLITYIENGRKQLVNKTDEDSHM---VFLNAKGTPLTSRGVRYVLNELI 233 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 + L + + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ + + Sbjct: 234 KKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----ERLR 289 Query: 312 EIYDQTHP 319 +Y + HP Sbjct: 290 SVYMKHHP 297 >gi|75763959|ref|ZP_00743586.1| Integrase/recombinase (XerD/RipX family) [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74488552|gb|EAO52141.1| Integrase/recombinase (XerD/RipX family) [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 302 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 91/311 (29%), Positives = 159/311 (51%), Gaps = 31/311 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q ++ L+IER SK T+ SY+ D F+ F+ E+ I + ++Y ++R +++ Sbjct: 11 QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYLTTL 65 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137 +K+ +S+ R +S ++S ++L R+ + N + +L KK S+P+ L ++ Sbjct: 66 HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 121 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 L S + RN A+L L+Y G+R+SE ++L +I T+ + GKG K Sbjct: 122 --EELFEVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 179 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248 R +P + +++ Y + N QL +F +G PL + + Sbjct: 180 RYIPFGSYAQDSLITYIE------NGRKQLVNKTDEDSRMVFLNAKGTPLTSRGVRYVLN 233 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 +L + L + + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ + Sbjct: 234 ELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 289 Query: 309 WMMEIYDQTHP 319 + +Y + HP Sbjct: 290 RLRSVYMKHHP 300 >gi|307565005|ref|ZP_07627522.1| putative tyrosine recombinase XerD [Prevotella amnii CRIS 21A-A] gi|307346318|gb|EFN91638.1| putative tyrosine recombinase XerD [Prevotella amnii CRIS 21A-A] Length = 310 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 96/283 (33%), Positives = 149/283 (52%), Gaps = 18/283 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L++E+G S+ T+ +Y D + FL EKI + +R ++ F + IG Sbjct: 19 LKLEKGYSEHTIDAYMRDIEKLSSFLE---AEKIDVLDVR---LEDLERFTACMSELGIG 72 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 RSL R LSGI+ F ++L I ++ L +S P+ L E + VD ++L+ Sbjct: 73 ARSLSRVLSGIRHFYRFL----ILDGYLEIDPTELLESPKQPKHLPEVLSTAEVD-IILN 127 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + TKW RN AI+ +L+ CGLR+SE SL N+ + +RI GKG K R+VP+ P Sbjct: 128 SIDLTKWEGQRNKAIIEVLFSCGLRVSELTSLKISNLYFQEQYVRIMGKGSKERLVPISP 187 Query: 205 SVRKAILE----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 +AI E + D + +F RG L + +++ G+ + Sbjct: 188 ---RAIEELNYWFLDRSQMKIKEGEDDYVFLNRRGSHLTRTMILIMLKRYAYAAGIKKTI 244 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + HTLRHSFAT LL G DLRSIQ++LGH + TT++YT++++ Sbjct: 245 SPHTLRHSFATALLEGGADLRSIQAMLGHESIVTTELYTHLDT 287 >gi|239636836|ref|ZP_04677835.1| tyrosine recombinase XerD [Staphylococcus warneri L37603] gi|239597510|gb|EEQ80008.1| tyrosine recombinase XerD [Staphylococcus warneri L37603] Length = 295 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 91/305 (29%), Positives = 159/305 (52%), Gaps = 21/305 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE---IRAFI 75 + +L+ ++IE+GLS T+ +Y D ++ +E + +Q I + + + I+ + Sbjct: 6 EEYLKFIQIEKGLSVNTIGAYRRDLNKY--------KEYLDLQKISNIDFVDRQTIQECL 57 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 Q +S+ R +S I+SF ++ + K + + + K LP L + + Sbjct: 58 GYLIDQGQSSKSIARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEVDEVI 117 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L++ L+ ++ R+ +L LLY G+R+SE + + +++ +R+ GKGD Sbjct: 118 DLLNAPDLNKNN-----GYRDRTMLELLYATGMRVSEVIQIEVEDVNLMMGFVRVFGKGD 172 Query: 196 KIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 K RIVPL +V + Y + P L + LF + GKPL+ + ++Q Sbjct: 173 KERIVPLSDTVIDYLTTYIETVRPQLLKQTVTNVLFLNMHGKPLSRQGIWKMMKQNGLKA 232 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 + + T HTLRHSFATHLL NG DLR++Q +LGH +STTQ+YT+V+ + ++Y Sbjct: 233 NINKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMY 288 Query: 315 DQTHP 319 +Q HP Sbjct: 289 NQYHP 293 >gi|239816431|ref|YP_002945341.1| tyrosine recombinase XerD [Variovorax paradoxus S110] gi|239803008|gb|ACS20075.1| tyrosine recombinase XerD [Variovorax paradoxus S110] Length = 303 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 97/308 (31%), Positives = 163/308 (52%), Gaps = 22/308 (7%) Query: 17 ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 E +++ L +E GLSK TL +Y D L A + + + + + ++++A++ Sbjct: 11 EIDDFIDALWLEDGLSKNTLAAYRRD----LALFAQWLGSQRSGRALDTAQESDLQAYMG 66 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRA---LNEK 132 R + + S R L+ K + ++ L++R+I + +I L + +PRA L+EK Sbjct: 67 ARLSTRGKATSANRRLTVFKRYYRWALRERRIAADPSI----RLAPARQMPRAIKTLSEK 122 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 Q VD++L ET + R+ A+L L+Y GLR+SE ++L ++ + LR+ G Sbjct: 123 Q----VDDLLAAPDVETP-LGLRDRAMLELMYASGLRVSELVALKVIDMSLNDGVLRVLG 177 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 KG K R+VP R+ I Y D P L+ LF RG + +F +++ Sbjct: 178 KGSKERLVPFGGEARRWIERYLDESRPTILDGQQTPDLFVTARGAGMTRVMFWIIVKKQA 237 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 G+ + + HTLRH+FATHLL+ G DLR++Q +LGH +STT IYT+V + + Sbjct: 238 AAAGIHVPLSPHTLRHAFATHLLNRGVDLRAVQLLLGHADISTTTIYTHVARER----LK 293 Query: 312 EIYDQTHP 319 +++ Q HP Sbjct: 294 QLHAQHHP 301 >gi|167622800|ref|YP_001673094.1| tyrosine recombinase XerD [Shewanella halifaxensis HAW-EB4] gi|167352822|gb|ABZ75435.1| tyrosine recombinase XerD [Shewanella halifaxensis HAW-EB4] Length = 300 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 102/301 (33%), Positives = 152/301 (50%), Gaps = 18/301 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +L +GLS TL +Y D R +L E +T S E+R ++++R Sbjct: 14 FLDDLWSTKGLSDNTLSAYRTDLRHLDRYLQKLGGELVTC------SQLEVRDYLAERFD 67 Query: 81 QKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + S R +S ++ F YL K++I T+ L + + K S LP +L+E+ Sbjct: 68 KGSAKTSSARMMSSLRRFYGYLIVKKQIDTDPMAL-IESPKLSRKLPDSLSEEDI----- 121 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + LL E I+ R+ A+L LLY GLR+SE + LT + + Q +RI GKG K R+ Sbjct: 122 DRLLAEPIEDDPIECRDKAMLELLYATGLRVSELVGLTMEQLSLRQGLVRITGKGGKERL 181 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VPL I Y +L Q LF RG+ + F I+ G+ Sbjct: 182 VPLGELAITEIESYLKFARTELLKGKQSDVLFPSKRGQQMTRQTFWHRIKLYALRAGIST 241 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + + ++ + H Sbjct: 242 ELSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVATAR----LATLHSEHH 297 Query: 319 P 319 P Sbjct: 298 P 298 >gi|294625642|ref|ZP_06704265.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666817|ref|ZP_06732050.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292600065|gb|EFF44179.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603401|gb|EFF46819.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 305 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 90/314 (28%), Positives = 153/314 (48%), Gaps = 27/314 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT-----EEKITIQTIRQLSYTEIRAF 74 +L L++ER +S TL +Y D +++ A T ++ Q +R F Sbjct: 6 EFLTYLQVERQVSAHTLDAYRRDLAALVVWAAEQTTDDGVQDAAVPAETAQFDSAHLRQF 65 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 ++ + + +SL+R LS +S+ +L K + S +R K LP+ L+ +A Sbjct: 66 VAAEHRRGLSAKSLQRRLSACRSYYAWLLKHGRISASPAAALRAPKAPRKLPQVLDADEA 125 Query: 135 LTLVDNVLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 + LV+ DA R+ A+L + Y GLR+SE +L +++ D + + Sbjct: 126 VRLVEVP----------TDAPLGLRDRALLEVFYSSGLRLSELCALRWRDLDLDSGLVMV 175 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 GKG K R+VP+ A+ E+ D + +F G G ++ Q I+QL Sbjct: 176 LGKGSKQRLVPVGSHAIAALREWRR----DSGASADSHVFPGRAGGAISQRAVQIRIKQL 231 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ H LRHSFA+H+L + GDLR +Q +LGH ++TTQIYT+++ ++ + Sbjct: 232 AVRQGMFKDVHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQH----L 287 Query: 311 MEIYDQTHPSITQK 324 ++YD HP +K Sbjct: 288 AKVYDAAHPRARRK 301 >gi|209521419|ref|ZP_03270129.1| tyrosine recombinase XerC [Burkholderia sp. H160] gi|209498137|gb|EDZ98282.1| tyrosine recombinase XerC [Burkholderia sp. H160] Length = 307 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 86/322 (26%), Positives = 158/322 (49%), Gaps = 41/322 (12%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +LE ER LS TL+ Y + + ++ + + L+ +IR +++ Sbjct: 10 YLSHLEHERRLSAHTLRGYTHELEEL--------KQLAKGRPLESLTAVDIRGAVARAHA 61 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS+ LS ++F ++L R + + +R K++ +LP+AL+ A L+DN Sbjct: 62 GGLTARSIGHRLSAWRAFYRWLAGRVELPANPVAAVRAPKQAKTLPKALSVDDAARLMDN 121 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL-----------TPQNIMDDQSTLR 189 + R+ A+L L Y GLR++E + L + + D + + Sbjct: 122 PAADSPEGL-----RDHAMLELFYSSGLRLAELVGLDVRFADIDGHRSAGWLKLDAAEVE 176 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL------PLFRGIRGKPLNPGVF 243 + GKG++ R+VP+ A+ + L + Q+ PLF RG L+P V Sbjct: 177 VLGKGNRRRVVPVGSKAVAALNAW-------LGVRDQMVRHDPHPLFLSTRGNRLSPNVV 229 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + +++ G+P + H LRHSFATH+L + GDLR++Q +LGH ++ TQ+YT ++ Sbjct: 230 RERVKRAALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTGLDF 289 Query: 304 KNGGDWMMEIYDQTHPSITQKD 325 ++ + +YD HP +++ Sbjct: 290 QH----LAHVYDSAHPRAKKRN 307 >gi|328541970|ref|YP_004302079.1| Tyrosine recombinase XerD [polymorphum gilvum SL003B-26A1] gi|326411720|gb|ADZ68783.1| Tyrosine recombinase XerD [Polymorphum gilvum SL003B-26A1] Length = 308 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 93/292 (31%), Positives = 140/292 (47%), Gaps = 17/292 (5%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 R+++L+ L ERG + TL SY D F FL R + ++ A++S Sbjct: 8 RESFLEMLAAERGAAHNTLDSYRRDLDDFAAFLG--------TTATRDATAEDVSAYLSD 59 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 + S R LS ++ + K+L + + + KK LPR L+E + L Sbjct: 60 LAARGFAASSQARRLSALRQYFKFLYAEGERGDDPTRTLASPKKRQGLPRILSEAEVDRL 119 Query: 138 VDNVLLHTS--HETKWIDARNS---AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 ++ + HET R +L +LY GLR+SE ++L + D + I+G Sbjct: 120 IEAACFDATLEHETPGRALRAQRLYTLLEVLYATGLRVSELVALPVGAALRDARLIGIRG 179 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF--RGIRGKPLNPGVFQRYIRQL 250 KG K R+VPL P ++A+ Y + LF G G F R ++ L Sbjct: 180 KGGKERLVPLSPRAQEAMRAYVARRNAEGAYKGSPWLFPSHGESGH-FTRQAFARDLKDL 238 Query: 251 RRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 R +GL + + H LRH+FA+HLL NG DLR +Q +LGH +STTQIYT+V Sbjct: 239 ARAVGLDAAKVSPHVLRHAFASHLLQNGADLRVVQQLLGHADISTTQIYTHV 290 >gi|21241407|ref|NP_640989.1| site-specific tyrosine recombinase XerC [Xanthomonas axonopodis pv. citri str. 306] gi|34222918|sp|Q8PPP9|XERC_XANAC RecName: Full=Tyrosine recombinase xerC gi|21106742|gb|AAM35525.1| site-specific recombinase [Xanthomonas axonopodis pv. citri str. 306] Length = 305 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 93/318 (29%), Positives = 155/318 (48%), Gaps = 35/318 (11%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR---------QLSYTE 70 +L L++ER +S TL +Y D L L + E+ T ++ Q Sbjct: 6 EFLTYLQVERQVSAHTLDAYRRD----LAALVVWASEQKTDDGVQDAAVPAETAQFDSAH 61 Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 +R F++ + + +SL+R LS +S+ +L KR + S +R K LP+ L+ Sbjct: 62 LRQFVAAEHRRGLSAKSLQRRLSACRSYYAWLLKRGRISASPAAALRAPKAPRKLPQVLD 121 Query: 131 EKQALTLVDNVLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 +A+ LV+ DA R+ A+L + Y GLR+SE +L +++ D Sbjct: 122 ADEAVRLVEVP----------TDAPLGLRDRALLEVFYSSGLRLSELCALRWRDLDLDSG 171 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 + + GKG K R+VP+ A+ E+ D + +F G G ++ Q Sbjct: 172 LVMVLGKGSKQRLVPVGSHAIAALREWRR----DSGASADSHVFPGRAGGAISQRAVQIR 227 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 I+QL G+ H LRHSFA+H+L + GDLR +Q +LGH ++TTQIYT+++ ++ Sbjct: 228 IKQLAVRQGMFKDVHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQH- 286 Query: 307 GDWMMEIYDQTHPSITQK 324 + ++YD HP +K Sbjct: 287 ---LAKVYDAAHPRARRK 301 >gi|257791164|ref|YP_003181770.1| integrase family protein [Eggerthella lenta DSM 2243] gi|317488103|ref|ZP_07946680.1| phage integrase [Eggerthella sp. 1_3_56FAA] gi|325832921|ref|ZP_08165594.1| phage integrase, N-terminal SAM domain protein [Eggerthella sp. HGA1] gi|257475061|gb|ACV55381.1| integrase family protein [Eggerthella lenta DSM 2243] gi|316912811|gb|EFV34343.1| phage integrase [Eggerthella sp. 1_3_56FAA] gi|325485786|gb|EGC88250.1| phage integrase, N-terminal SAM domain protein [Eggerthella sp. HGA1] Length = 323 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 94/318 (29%), Positives = 149/318 (46%), Gaps = 20/318 (6%) Query: 7 PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66 P IV EL+ + + +ER S TL++Y D + F + E+I I Sbjct: 19 PRIV--ELIDA---FCHAMRVERNASVHTLRAYRID---LMDFARWACRERIDILAA--- 67 Query: 67 SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126 ++ ++R ++ + + ++ R LS ++SF ++L I E ++ K+ SLP Sbjct: 68 THRQLRRYLGELDRAQYSRTTVNRRLSALRSFFRWLNVTGIADEDPASILQGPKQPKSLP 127 Query: 127 RALNEKQALTLV----DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 + + L+ E +DARN A+L LY CG R+SEA L N+ Sbjct: 128 HVIRASDMVKLLTVYGKRDAAGREREQSSVDARNLALLEFLYACGARVSEASGLLAANVD 187 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPG 241 +++ GKG K RIVPL ++ Y P L F RG + Sbjct: 188 FGSGQVKVFGKGSKERIVPLHDMAVSSMRAYATWARPLILRDRTCDYFFVSTRGNRMGTD 247 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 ++ + R GL S + H +RH+FAT LL G DLRS+Q +LGH LSTTQIYT++ Sbjct: 248 AIRKMFKDALRQAGLDESLSPHDMRHTFATDLLDGGADLRSVQEMLGHASLSTTQIYTHL 307 Query: 302 NSKNGGDWMMEIYDQTHP 319 + + +++ +THP Sbjct: 308 SPGR----LKQVHARTHP 321 >gi|114561848|ref|YP_749361.1| tyrosine recombinase XerD [Shewanella frigidimarina NCIMB 400] gi|114333141|gb|ABI70523.1| tyrosine recombinase XerD [Shewanella frigidimarina NCIMB 400] Length = 305 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 102/302 (33%), Positives = 160/302 (52%), Gaps = 18/302 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +L +L GLS TL SY D + ++ T+ K +Q + L +R ++++R Sbjct: 18 QFLDDLWSTNGLSDNTLVSYRTDLQNAERYI--LTKGKDLLQVDQAL----LRDYLAERF 71 Query: 80 TQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 ++ S R LS ++ F YL K+KI+ + L +++ K LP L+E Q + Sbjct: 72 DKQFAKSSTARLLSSLRRFYAYLLVKQKISQDPTAL-IKSPKLVRQLPDTLSEAQ----I 126 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 DN+L + + I+ R+ A+L LLY GLR++E +SLT + I Q +R+ GKG K R Sbjct: 127 DNLLSEPNIDDP-IEHRDKAMLELLYATGLRVTELVSLTMEQISLRQGLVRVMGKGGKER 185 Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL A+ +Y +L ++ LF RG+ + F I+ G+ Sbjct: 186 LVPLGELAITAVEQYIKFARAELLSMKQSDVLFPSRRGQMMTRQTFWHRIKLYAARAGIQ 245 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + +++ Q Sbjct: 246 CHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKVR----LQQLHSQH 301 Query: 318 HP 319 HP Sbjct: 302 HP 303 >gi|310642630|ref|YP_003947388.1| phage integrase:phage integrase, n-terminal sam-like protein [Paenibacillus polymyxa SC2] gi|309247580|gb|ADO57147.1| Phage integrase:Phage integrase, N-terminal SAM-like protein [Paenibacillus polymyxa SC2] Length = 314 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 90/311 (28%), Positives = 152/311 (48%), Gaps = 26/311 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q ++Q +E E+GLS+ TL++Y+ D +QF F E ++ + + + ++ Sbjct: 6 QPFVQYMEEEKGLSRSTLEAYQRDVQQFAEFA-----ESCGLEQPDNVQRSHLVLYLGHL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + Q ++ RS++ I+SF +L + I + + LP+A +K ++ Sbjct: 61 KEQGKAAATISRSVASIRSFFHFLIREGIAIHDPSVLV-------ELPKATKKKPSVLTQ 113 Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 D + LL + R+ A+L LLY G+R+SE ++L ++ D + G+ K Sbjct: 114 DEIERLLAAPDVSAPQGGRDKAMLELLYATGIRVSELIALNVCDVRIDLRFVHCGGEAGK 173 Query: 197 IRIVPLLPSVRKAILEYYD------LCPF--DLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 R+VP+ + Y D L P + Q LF + G+ L+ F + I+ Sbjct: 174 ERVVPISREASQWAQAYLDEQRPALLRPGQGEEAQTKQEALFLNVSGQRLSRQGFWKIIK 233 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 + + G+ T HTLRHSFA H+L G DLRS+Q +LGH L+TTQ+Y +N Sbjct: 234 KYAQEAGISKDITPHTLRHSFAVHMLEGGADLRSVQEMLGHADLATTQVYAQTARRN--- 290 Query: 309 WMMEIYDQTHP 319 M E+Y+ HP Sbjct: 291 -MKEVYEMHHP 300 >gi|30021919|ref|NP_833550.1| site-specific tyrosine recombinase XerC [Bacillus cereus ATCC 14579] gi|29897475|gb|AAP10751.1| Integrase/recombinase (XerC/CodV family) [Bacillus cereus ATCC 14579] Length = 294 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 89/308 (28%), Positives = 161/308 (52%), Gaps = 25/308 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q ++ L+IER SK T+ SY+ D F+ F+ E+ I + ++Y ++R +++ Sbjct: 3 QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYLTTL 57 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137 +K+ +S+ R +S ++S ++L R+ + N + +L KK S+P+ L ++ Sbjct: 58 HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 113 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 L S + RN A+L L+Y G+R+SE ++L +I T+ + GKG K Sbjct: 114 --EELFEVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 171 Query: 198 RIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 R +P + +++ Y + + D + ++ +F +G PL + + +L Sbjct: 172 RYIPFGSYAQDSLITYIENGRKQLVNKTDEDSHM---VFLNAKGTPLTSRGVRYVLNELI 228 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 + L + + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ + + Sbjct: 229 KKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----ERLR 284 Query: 312 EIYDQTHP 319 +Y + HP Sbjct: 285 SVYMKHHP 292 >gi|313632584|gb|EFR99578.1| tyrosine recombinase XerD [Listeria seeligeri FSL N1-067] gi|313637133|gb|EFS02675.1| tyrosine recombinase XerD [Listeria seeligeri FSL S4-171] Length = 297 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 94/308 (30%), Positives = 161/308 (52%), Gaps = 27/308 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L L +E+GLS T+++YE D F+ ++ T +T L ++I F++ R Sbjct: 7 DFLHFLIVEKGLSANTIKAYERDLHYFVSYIN--TARPLTDPNT--LERSDIVGFMAFAR 62 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + RS+ R ++ ++SF YL + ++ + K++ LP+ LN +D Sbjct: 63 KEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLN-------LD 115 Query: 140 NV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 +V LL +S + + R+ A++ +LY GLR++E + L ++ ++ GKGDK Sbjct: 116 DVELLLSSSDTSTSLGLRDQAMMEILYATGLRVTELVQLKMDDLHLQMGFIQTIGKGDKE 175 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI------RGKPLNPGVFQRYIRQLR 251 RI+PL + + +Y + + ++ P +R G+ L F + ++ + Sbjct: 176 RIIPLGKTATTVLEQYLE----EARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIA 231 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 + G+ T HTLRHSFATHLL NG DLRS+Q +LGH +STTQIYT+V + Sbjct: 232 KESGIEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLR----LK 287 Query: 312 EIYDQTHP 319 ++Y Q HP Sbjct: 288 DVYKQFHP 295 >gi|71905836|ref|YP_283423.1| tyrosine recombinase XerC subunit [Dechloromonas aromatica RCB] gi|71845457|gb|AAZ44953.1| tyrosine recombinase XerC subunit [Dechloromonas aromatica RCB] Length = 295 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 89/307 (28%), Positives = 157/307 (51%), Gaps = 19/307 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 WL L +R LS T+ +Y D ++ L I + + L +R F+++ Sbjct: 6 TWLAELSDQRRLSAHTVSNYRRDLQKLLA-----AAGDIPLAS---LQVHHLRRFVAQLH 57 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q + RSL R+LS + F +L +R + + +R K LP+AL+ + Sbjct: 58 GQGLAGRSLARALSAWRGFFHWLGERGMVKANPCDGIRPPKSPRMLPKALSVDE----TS 113 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDKI 197 +L+ + AR+ A+ L Y GLR++E ++L + + D +S +R+ GK +K+ Sbjct: 114 RLLMPVDDDDPVQAARDLAMFELFYSSGLRLAELVALDCEALDDIAHESEVRVLGKRNKL 173 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 R+VP+ S + L + +L + LF G RG ++P + + + + LGLP Sbjct: 174 RLVPV-GSKAREALAAWAAVRNELAKPEEKALFVGQRGGRISPRMVEARLARRAVLLGLP 232 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 H LRHSFA+H+L + GDLR++Q +LGH +++TQ+YT+++ ++ + ++YD Sbjct: 233 THVHPHMLRHSFASHVLQSSGDLRAVQEMLGHASIASTQVYTHLDFQH----LAKVYDAA 288 Query: 318 HPSITQK 324 HP K Sbjct: 289 HPRAKSK 295 >gi|328954140|ref|YP_004371474.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109] gi|328454464|gb|AEB10293.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109] Length = 310 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 94/306 (30%), Positives = 162/306 (52%), Gaps = 22/306 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++ ++L IER L+ T+++Y D QF+ F + + ++ +L+Y ++RAF+++R Sbjct: 19 DFSRHLRIERSLAAHTVRNYLSDIGQFMEFWNY----RRPGHSLGELTYQDLRAFLAERH 74 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 S+ R L+ +++F K+L ++ + + + K LP+ L + L++ Sbjct: 75 RLNC-KTSIARKLAALRTFCKFLTRQGLLSHNIAALTPTPKLEARLPKFLTIDEVFHLLE 133 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 T + R+ AIL L Y GLR++E + L N+ Q +++GKG K R+ Sbjct: 134 QTWGQTV-----LAVRDRAILELFYSGGLRVAELVGLNLDNLDLPQHLAKVRGKGGKERL 188 Query: 200 VPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ--LRRY 253 V + L ++ +L +L D ++ + +F RG L R + + ++ Sbjct: 189 VIIGRQALQTLNSYLLVRRELITPDSPVSGREAVFLNYRGGRLTSRSVARLVEKWAIKAG 248 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 LG PLS H LRH+FATHLL DLR++Q +LGH +LSTTQ Y +VN D++ME+ Sbjct: 249 LGQPLS--PHGLRHTFATHLLEGKADLRAVQELLGHAQLSTTQKYLHVNL----DYLMEV 302 Query: 314 YDQTHP 319 YD+ HP Sbjct: 303 YDKAHP 308 >gi|149276499|ref|ZP_01882643.1| site-specific recombinase [Pedobacter sp. BAL39] gi|149233019|gb|EDM38394.1| site-specific recombinase [Pedobacter sp. BAL39] Length = 292 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 83/286 (29%), Positives = 152/286 (53%), Gaps = 23/286 (8%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L++ER LS ++ +Y D ++ L Y + I++++ ++++ FIS + Sbjct: 7 LKLERALSVNSISAYISDVKK----LFEYFDSTGKSYDIQEVNTSDLKLFISWVNELGML 62 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 + R +SGIKS+ +L ++ + ++ + + LP LN ++ N ++ Sbjct: 63 PVTQARVISGIKSYFSFLSLEQLISSDPASSLETPRLNKKLPDTLNIEEI-----NAMIQ 117 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 +K R+ A+L +LYGCGLR+SE + + NI + +++ GKGDK RI+P+ Sbjct: 118 AIDHSKAEGLRSRAMLEVLYGCGLRVSELIQMKISNIFINSEFIKVVGKGDKERIIPIGS 177 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGI--------RGKPLNPGVFQRYIRQLRRYLGL 256 + K I+ Y + + I++P+ +G RG L + I+ L + G+ Sbjct: 178 AALKYIMMYIN------EVRIEVPIKKGQEDFVFLNRRGTALTRMLIFNMIKGLAKDAGI 231 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + + HT RHSFATHL+ G DLR++Q +LGH ++TT+IYT+++ Sbjct: 232 QKNISPHTFRHSFATHLIEGGADLRAVQEMLGHSSITTTEIYTHLD 277 >gi|70726420|ref|YP_253334.1| site-specific recombinase [Staphylococcus haemolyticus JCSC1435] gi|82582338|sp|Q4L6J7|XERD_STAHJ RecName: Full=Tyrosine recombinase xerD gi|68447144|dbj|BAE04728.1| site-specific recombinase [Staphylococcus haemolyticus JCSC1435] Length = 295 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 95/308 (30%), Positives = 162/308 (52%), Gaps = 27/308 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ ++IE+GLS+ T+ +Y D +++ +++ E+KI I + I+ + Sbjct: 6 EEYLKFIQIEKGLSENTIGAYRRDLKKYQLYMQ---EQKIA--HIDFIDRQTIQECLGSL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q +S+ R +S I+SF ++ + K + + + K LP L+ ++ + L Sbjct: 61 IDQGASAKSIARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLDVEEVIQL- 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L T TK R+ IL LLY G+R++E + + ++ +++ GKG+K R Sbjct: 120 ----LETPDLTKNNGYRDRTILELLYATGMRVTELIQIEIDDVNLIMGFVKVFGKGNKER 175 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQL-------PLFRGIRGKPLNPGVFQRYIRQLR 251 I+PL +V +EY D + N+ QL LF + G+PL + I+Q Sbjct: 176 IIPLGDTV----IEYLD--TYINNVRSQLLKKTVTNVLFLNLHGRPLTRQGIWKLIKQYG 229 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 + + T HTLRHSFATHLL NG DLR++Q +LGH +STTQ+YT+V+ + Sbjct: 230 LRANINKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKTQ----IR 285 Query: 312 EIYDQTHP 319 ++Y+Q HP Sbjct: 286 QMYNQFHP 293 >gi|145590194|ref|YP_001156791.1| phage integrase family protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048600|gb|ABP35227.1| tyrosine recombinase XerC subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 333 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 92/324 (28%), Positives = 159/324 (49%), Gaps = 33/324 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +L L + R LS TL++Y D F E+ + + + S +R + + Sbjct: 13 QEYLHELHVLRQLSPHTLKAYGMDLSDLQ---NFALEDSVELLKV---SNGHVRRWAGRL 66 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKR---------KITT---ESNILNMRNLKKSNSLP 126 ++ RS+ R+LS + + +L ++ K+T + + +++ K+ SLP Sbjct: 67 HSKGKSSRSIARALSAWRGWYDWLTEKDARRDARAGKVTNNLIANPVDDVKAPKRLKSLP 126 Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD--- 183 +AL+ +QAL LV+ + + R++AI+ LLY GLR+SE L + D Sbjct: 127 KALSVEQALALVNQAVKEAEEKKDLESIRDAAIIDLLYSSGLRLSELLGIDVMQSKDRQH 186 Query: 184 --------DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235 D + + + GKG K R VP+ K++ + +L + LF G Sbjct: 187 ESAGWLDWDAAEVTVLGKGGKRRSVPVGVPAMKSLAVWRELRDAGSYSEESIALFLSATG 246 Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 K L+P Q +R L GLP H +RHSFA+H+L + DLR++Q +LGH +++T Sbjct: 247 KRLSPRTVQARLRTLAMRAGLPTHVHPHMMRHSFASHVLQSSQDLRAVQEMLGHASIAST 306 Query: 296 QIYTNVNSKNGGDWMMEIYDQTHP 319 QIYT+++ ++ + + YD+ HP Sbjct: 307 QIYTSLDFQH----LAQAYDKAHP 326 >gi|256820383|ref|YP_003141662.1| integrase family protein [Capnocytophaga ochracea DSM 7271] gi|256581966|gb|ACU93101.1| integrase family protein [Capnocytophaga ochracea DSM 7271] Length = 307 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 93/299 (31%), Positives = 147/299 (49%), Gaps = 15/299 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L IE S T+++Y+ D R F F+ EEK + Q +I+ +I + I Sbjct: 10 LSIEMKYSDHTVEAYKHDLRSFEKFIKNLYEEKGEDCCLEQADQEDIKKWIIHLSDETIS 69 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITT----ESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 RS+ R LS +K++ +LKK K E I ++ KK + LP + E ++ Sbjct: 70 FRSINRKLSALKTYYNFLKKTKQIEISPFEKGIFLLKTEKK-HKLPFSEAE------IEK 122 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 VL S + + + RN A++ LY G+R SE L ++ +Q +++ GKGDK R + Sbjct: 123 VLSFFSSKDSFDEVRNRAVIETLYATGIRRSELSGLKVSDVDFEQKQIKVLGKGDKERYI 182 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 P++P + + EY L N Q LF GK + + R I + Sbjct: 183 PIIPELENTLKEYLVLREEVKNEKSQDYLFLVKNGKKIYSTLVYRIINSYFSVVTTKKDV 242 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H LRHSFA+HLL NG DL +++ +LGH L++TQ+YTN + + + Y + HP Sbjct: 243 SPHVLRHSFASHLLDNGADLYTVKELLGHSSLASTQVYTNTSLAE----LKKQYKKAHP 297 >gi|228902334|ref|ZP_04066491.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 4222] gi|228966776|ref|ZP_04127820.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar sotto str. T04001] gi|228792875|gb|EEM40433.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar sotto str. T04001] gi|228857303|gb|EEN01806.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 4222] Length = 299 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 91/311 (29%), Positives = 159/311 (51%), Gaps = 31/311 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q ++ L+IER SK T+ SY+ D F+ F+ E+ I + ++Y ++R +++ Sbjct: 8 QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYLTTL 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137 +K+ +S+ R +S ++S ++L R+ + N + +L KK S+P+ L ++ Sbjct: 63 HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 118 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 L S + RN A+L L+Y G+R+SE ++L +I T+ + GKG K Sbjct: 119 --EELFEVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 176 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248 R +P + +++ Y + N QL +F +G PL + + Sbjct: 177 RYIPFGSYAQDSLITYIE------NGRKQLVNKTDEDSRMVFLNAKGTPLTSRGVRYVLN 230 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 +L + L + + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ + Sbjct: 231 ELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 286 Query: 309 WMMEIYDQTHP 319 + +Y + HP Sbjct: 287 RLRSVYMKHHP 297 >gi|134102479|ref|YP_001108140.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] gi|133915102|emb|CAM05215.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] Length = 325 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 88/317 (27%), Positives = 148/317 (46%), Gaps = 13/317 (4%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 + LP V + + ++L+ ERGLS T+++Y D L EE+ + + Sbjct: 19 DGLPGPVGAAV----DGFERHLKAERGLSAHTVRAYIGDVVSLLDHFCAGDEER---KGL 71 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 L T +R +++ + +L R + ++F + + ++ + Sbjct: 72 NGLGLTVLREWLAAQHADGASRSTLARRAASARTFTAWAHRAELLPHDPGPRLAAPAPKR 131 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 LP L +QA + + + + + I R+ A++ LLY G+R+SE L ++ Sbjct: 132 KLPTVLRAEQAKSAM-SASQAGAEQGDPIALRDHAVVELLYATGVRVSELCGLDLDDVDH 190 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGV 242 ++ +R+ GKGDK R VP A+ + +L + P LF G RG L+P Sbjct: 191 ERRVVRVIGKGDKERAVPFGVPAEDAVSRWISAGRPELATDASGPALFLGARGGRLDPRA 250 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 +R + + H LRHS ATHLL G DLRS+Q +LGH L+TTQ+YT+V Sbjct: 251 VRRVVHDAVGAVSGATDVGPHGLRHSAATHLLEGGADLRSVQELLGHATLATTQLYTHVT 310 Query: 303 SKNGGDWMMEIYDQTHP 319 + + I+D+THP Sbjct: 311 VER----LKAIHDRTHP 323 >gi|229820995|ref|YP_002882521.1| integrase family protein [Beutenbergia cavernae DSM 12333] gi|229566908|gb|ACQ80759.1| integrase family protein [Beutenbergia cavernae DSM 12333] Length = 380 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 93/310 (30%), Positives = 147/310 (47%), Gaps = 16/310 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + +LE +RGLS T+++Y D L L +E R L +R +++++ Sbjct: 76 ERYALHLEAQRGLSAHTVRAYTSDVADLLAELPPTGDEPNGADLTR-LDLVALRRWLARQ 134 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + +L R + ++F + + + E +R+ + +P L E A T++ Sbjct: 135 ARAGLARSTLARRSASARTFTAWAHRAGLLAEDVGARLRSPRADVVVPVVLTEADAATVL 194 Query: 139 DNV--------LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 D V E + R+SA+L LLYG LR+SE L ++ + +R+ Sbjct: 195 DGVRADDGGVGADDDEGERSALALRDSAMLELLYGAALRVSELAGLDTGDVDLRERLVRV 254 Query: 191 QGKGDKIRIVPL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 GKG K R+VP LP+ R AI + + P LF G RG ++P V + + + Sbjct: 255 LGKGAKERVVPFGLPAAR-AIEAWISVRPELAGPRSGRALFLGARGGRIDPRVVRDVVHR 313 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 G+ H LRHS ATHLL+ G DLRS+Q ILGH L+TTQ YT+V + Sbjct: 314 ATARAGV-RDLAPHGLRHSAATHLLAGGSDLRSVQEILGHASLATTQRYTHVTPER---- 368 Query: 310 MMEIYDQTHP 319 + + Q HP Sbjct: 369 LRAAFRQAHP 378 >gi|303232711|ref|ZP_07319396.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae PB189-T1-4] gi|302481197|gb|EFL44272.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae PB189-T1-4] Length = 324 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 96/301 (31%), Positives = 149/301 (49%), Gaps = 27/301 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +L+ + ER S TL++Y D + FL T++ I T ++ + ++S Sbjct: 9 EYLRYIRFERNFSANTLEAYARDLNAYCEFL---TDKHI--DTPVHITRRVVEEYLSYVA 63 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 T S++R +S IKSF +++ +I T ++ KK LP+ L+ + L+D Sbjct: 64 TLDKAPSSVQRCVSAIKSFHRFMVIEQICTAHPTADIALPKKPALLPQVLSHTEVERLLD 123 Query: 140 NVLLH----TSHETK------------WIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 L +H TK W R+ AIL LLYGCGLR+SE +LT N+ Sbjct: 124 EPFLQELQPAAHTTKQGTTTMTKAACFW---RDKAILELLYGCGLRVSELCNLTCDNVSR 180 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPG 241 LR+ GKG K R+VPL+ S A Y D +L +F +RG ++ Sbjct: 181 TDEVLRVIGKGSKERVVPLIGSALAAYTRYVDTWRAELYNPRRSNHAVFLSVRGSAISRQ 240 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + + R +G+ HTLRH++ATHLL G DLR +Q +LGH ++TTQ+YT++ Sbjct: 241 AVFALVEKYGRMVGI-RGLHPHTLRHTYATHLLEGGMDLRIVQELLGHASIATTQLYTHI 299 Query: 302 N 302 + Sbjct: 300 D 300 >gi|270308039|ref|YP_003330097.1| site-specific recombinase [Dehalococcoides sp. VS] gi|270153931|gb|ACZ61769.1| site-specific recombinase [Dehalococcoides sp. VS] Length = 307 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 97/310 (31%), Positives = 155/310 (50%), Gaps = 35/310 (11%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ L +E+ +S TL++Y D + F+ + E+K++ + ++ +R ++S Sbjct: 8 YLEYLSVEKNVSAYTLRNYRTD---LIGFVNYLIEKKVS--SFDRVDRYILRDYMSSLIA 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + I S+ R LS ++SF +YL + + ++ LN + + LP L + + Sbjct: 63 KGIVKGSIARKLSAVRSFYRYLMREGLIQKNPTLNASSPRLDKRLPEFLTTAEV-----S 117 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LL + R+ A + LLY GLR+SE + L +N+ +R+ GKG K RIV Sbjct: 118 KLLRMPDSSTPQGLRDKAFMELLYASGLRVSELVKLDIENLDLHSHQIRVWGKGSKERIV 177 Query: 201 PL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP---LNPG-------VFQRYIRQ 249 + LP++ ++I Y LN+ PL +G R P LNP FQ + + Sbjct: 178 LMGLPAI-QSIQTY---------LNLGRPLLKGKRNTPALFLNPNGGRLSARSFQERLDK 227 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 L G+ H LRH+FATHLL G DLR +Q +LGH LSTTQIYT+V Sbjct: 228 LAHQAGIEKHVHPHMLRHTFATHLLDGGADLRVVQELLGHSNLSTTQIYTHVTKSQA--- 284 Query: 310 MMEIYDQTHP 319 ++Y +HP Sbjct: 285 -RKVYMSSHP 293 >gi|289624627|ref|ZP_06457581.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651147|ref|ZP_06482490.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. aesculi str. 2250] gi|298489345|ref|ZP_07007359.1| Tyrosine recombinase xerC [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156136|gb|EFH97242.1| Tyrosine recombinase xerC [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 299 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 96/306 (31%), Positives = 151/306 (49%), Gaps = 21/306 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 + +L ER +S TL++Y D + L + +K + + L +R+F +++ Sbjct: 8 YCMHLRSERQVSPHTLEAYRRDLGKVLAYC-----QKAQLSSWNDLDIQHLRSFTARQHQ 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q RSL R LS ++ F KYL + I + K LP+ L+ + L+D Sbjct: 63 QGQSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRTAQLLDG 122 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + E ++ R+ AIL LLY GLR+SE L + +++ GKG K R++ Sbjct: 123 GV-----EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVL 177 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPL 258 P+ R+A LE + P N Q +F +GK L P Q ++ R LG L Sbjct: 178 PVGSKARQA-LEIW--LPLRALTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGERELGQNL 234 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 H LRHSFA+HLL + DLR++Q +LGH + TTQIYT+++ ++ + +YD H Sbjct: 235 HP--HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATVYDSAH 288 Query: 319 PSITQK 324 P +K Sbjct: 289 PRAKRK 294 >gi|167717571|ref|ZP_02400807.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei DM98] Length = 244 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/253 (30%), Positives = 134/253 (52%), Gaps = 25/253 (9%) Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 RS+ LS ++F ++ + + + +R K++ +LP+AL+ L+D T Sbjct: 4 RSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKRAKTLPKALSVDDTAALMDAPTAGT 63 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-----------QSTLRIQGKG 194 + R+ AIL L Y GLR++E + L + + D ++ + ++GKG Sbjct: 64 AESL-----RDHAILELFYSSGLRLAELIGLDIEYVKDGAYRSAGWLDLAEAEVTVRGKG 118 Query: 195 DKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 DK R VP+ RKA+ L + + + PLF +RG ++PGV + +++ Sbjct: 119 DKERKVPV---GRKALDALHAWLAVRGEFVKHDPRPLFLSVRGNRMSPGVVRERVKRAAL 175 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 G+P + H LRHSFATH+L + GDLR++Q +LGH +S TQ+YT+++ ++ + + Sbjct: 176 AAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQH----LAK 231 Query: 313 IYDQTHPSITQKD 325 IYD HP ++D Sbjct: 232 IYDSAHPRAKKRD 244 >gi|167756958|ref|ZP_02429085.1| hypothetical protein CLORAM_02507 [Clostridium ramosum DSM 1402] gi|167703133|gb|EDS17712.1| hypothetical protein CLORAM_02507 [Clostridium ramosum DSM 1402] Length = 312 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 93/318 (29%), Positives = 166/318 (52%), Gaps = 15/318 (4%) Query: 9 IVSFELLKER-QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67 + F L+K+ + Q L +E+GLSK T+ SY D LI + + E+ I I ++ Sbjct: 7 LAKFMLIKDALSEYKQYLIVEKGLSKNTIYSYLRD----LIAFSNFIGEEYEINQIENIN 62 Query: 68 YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127 I ++ K ++ S+ R L ++ +L K I E+ + + K+ LP Sbjct: 63 KEHIHLYL-KELSKTNCTNSISRKLVSLRMLYIFLVKENIVKENLMSSFTLPKRDKKLPI 121 Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 L++++ + ++D +++ I +RN ++ LLY G+RISE L+LT +++ Sbjct: 122 VLSQEEMIEILDGIIV-----CDAISSRNRCMVELLYATGMRISELLNLTLKDLNIKMGF 176 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 +++ GKG+K R++P+ V + + +Y + + N+ LF G+ L+ F + Sbjct: 177 IKVIGKGNKERMIPIGSYVGEILEQYINDYRAEFNIKNDSLLFFNKHGQRLSREEFYSIL 236 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 + + + + HT RH+FATHLL NG DLRSIQ +LGH +STT IYT+++++ Sbjct: 237 QTIVNSTSITKKVSPHTFRHTFATHLLENGADLRSIQELLGHSDISTTTIYTHISNQK-- 294 Query: 308 DWMMEIYDQTHPSITQKD 325 + Y Q HP I + + Sbjct: 295 --IRSEYQQFHPRIKKHN 310 >gi|86133541|ref|ZP_01052123.1| phage integrase family protein [Polaribacter sp. MED152] gi|85820404|gb|EAQ41551.1| phage integrase family protein [Polaribacter sp. MED152] Length = 298 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 100/306 (32%), Positives = 155/306 (50%), Gaps = 34/306 (11%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEE----KITIQTIRQLSYTEIRAFISKRRT 80 L+IERGLS+ T+ SY D + FL E KI + ++Q Y + Sbjct: 14 LKIERGLSQNTIDSYTRDLNKLTQFLNVNDIEISPIKIDKEIVQQFIYDVAKG------- 66 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK-SNSLPRALNEKQALTLVD 139 + RS R +SG++SF YL E+N ++ K LP L+E + +L+ Sbjct: 67 --VNPRSQARIISGLRSFFDYLVFEDFR-ETNPTDLIEAPKIGRKLPDTLSEDEINSLIQ 123 Query: 140 NV-LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 ++ L H E RN IL LY CGLR+SE ++L ++ D+ +++ GKG+K R Sbjct: 124 SIDLSHPQGE------RNRTILETLYSCGLRVSELITLKISDLYFDEGFIKVTGKGNKER 177 Query: 199 IVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 VP+ + +K I Y + P + + LF RGK L + ++ L Sbjct: 178 FVPIHYNAQKYITTYIHQIRNQVKPVK---SFEDTLFLNRRGKGLTRQMIFTILKDLAIK 234 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 + L + HTLRHSFATHLL NG DLR+IQ +LGH ++TT++Y ++++ ++ EI Sbjct: 235 IDLNKKISPHTLRHSFATHLLKNGADLRAIQQMLGHESITTTEVYVHLDNS----YLKEI 290 Query: 314 YDQTHP 319 + HP Sbjct: 291 VETYHP 296 >gi|325268524|ref|ZP_08135154.1| integrase/recombinase XerD [Prevotella multiformis DSM 16608] gi|324989052|gb|EGC21005.1| integrase/recombinase XerD [Prevotella multiformis DSM 16608] Length = 310 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 93/284 (32%), Positives = 145/284 (51%), Gaps = 20/284 (7%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L++E+G S T+ +Y D + L +LA + +T T+ QL + F + IG Sbjct: 18 LKLEKGCSPNTVDAYLHDVDKLLRYLAG-EQVPVTDVTLEQLEH-----FAASVSDLGIG 71 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 RSL R LSG++ F ++L + + K+ + LP L+ + L V L Sbjct: 72 ARSLARILSGVRQFYRFLVLDGYMEADPTELLESPKQPDHLPEVLSTAEVDLLEQAVDL- 130 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 TKW RN AI+ +L+ CGLR+SE L ++ ++ +R+ GKG K R+VP+ P Sbjct: 131 ----TKWEGHRNRAIIEVLFSCGLRVSELTHLKLSDLYREEQYVRVMGKGSKERLVPISP 186 Query: 205 SVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 L+ D D N+ P +F RG L + I++ G+ + Sbjct: 187 RA----LDELDCWFADRNVMKIKPGEEDYVFLNRRGHHLTRTMILIMIKRYAAEAGIRKT 242 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + HTLRHSFAT LL G DLR+IQ++LGH + TT+IYT++++ Sbjct: 243 ISPHTLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTHIDT 286 >gi|299822639|ref|ZP_07054525.1| tyrosine recombinase XerC [Listeria grayi DSM 20601] gi|299816168|gb|EFI83406.1| tyrosine recombinase XerC [Listeria grayi DSM 20601] Length = 304 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 97/319 (30%), Positives = 158/319 (49%), Gaps = 46/319 (14%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q++L LE ER S T+ +Y+ D F FL +E+I I+++ + Y E+R ++++ Sbjct: 12 QSFLTYLEKERNYSAYTVAAYKQDIHDFQTFL----KEEI-IESLTDVRYLEVRVYLTRL 66 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R ++ ++ R LS ++SF +L + + E+ + + K LP+ ++ L Sbjct: 67 REKEYSRSTVSRKLSSLRSFYTFLLRDQQIAENPFSYVSHSKNHLRLPKFFYSEEMEALF 126 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 V + K + RN A+L +LYG G+R+SE + +I ++ I+GKG+K R Sbjct: 127 TVVY----QDDKLLTLRNRALLEILYGTGIRVSECADIRLADIDATYQSILIRGKGNKER 182 Query: 199 IVPL-----------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 VP L + RKA++E Y LF G PL P Sbjct: 183 YVPFGAYAEDAVQLYLEASRKALMEKYH--------KEHDYLFVNHYGDPLTP------- 227 Query: 248 RQLRRYLGLPLSTTA-------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 R +R L + + A H LRH+FAT LL+NG D+R++Q +LGH LS+TQIYT+ Sbjct: 228 RGIRYCLSKTIESAAMTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTH 287 Query: 301 VNSKNGGDWMMEIYDQTHP 319 V ++ + Y + HP Sbjct: 288 VTKEH----LKATYMKFHP 302 >gi|193222420|emb|CAL63069.2| Tyrosine recombinase xerC [Herminiimonas arsenicoxydans] Length = 318 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 95/320 (29%), Positives = 154/320 (48%), Gaps = 29/320 (9%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +L NL +R LS LT+ SY D + L + +S+ +IR F ++ Sbjct: 12 GYLDNLISQRQLSPLTITSYRRDLLELLALATASDGNA----ALSAISHFQIRKFAAQLH 67 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + + RS+ R LS + F +L ++ + + ++ K++ LP+AL A+ LV Sbjct: 68 AKGLNARSIARKLSAWRGFFTWLSEQNAVASNPVDGIKAPKRNKPLPKALAADDAVRLVS 127 Query: 140 NVLLHTSHETKWIDAR----NSAILYLLYGCGLRISEALSL----------TPQNIMD-D 184 ++ K DA N A+ LLY GLR SE + L T +D D Sbjct: 128 -----SNSPGKNADATMQLCNRAMFELLYSSGLRASELVGLDLKYAQENRYTSAGWIDFD 182 Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 + GKG K+R P+ A+ + + L L+ PLF RG ++ V Q Sbjct: 183 AHEAMVTGKGSKMRSAPIGQPAIDALKAWLAVRDTLLKLDPH-PLFLSERGTRISARVLQ 241 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 ++ + +GLP+ H LRHSFA+H+L + GDLR++Q +LGH +S TQIYT+++ + Sbjct: 242 LRLKAHAQAVGLPMDVHPHVLRHSFASHVLQSSGDLRAVQEMLGHASISATQIYTSLDFQ 301 Query: 305 NGGDWMMEIYDQTHPSITQK 324 + ++YD HP +K Sbjct: 302 R----LAQVYDAAHPRAKKK 317 >gi|312130041|ref|YP_003997381.1| integrase family protein [Leadbetterella byssophila DSM 17132] gi|311906587|gb|ADQ17028.1| integrase family protein [Leadbetterella byssophila DSM 17132] Length = 282 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 91/299 (30%), Positives = 158/299 (52%), Gaps = 23/299 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +L+ ER LS T++SY+ D Q FL Q+S ++RA++ Sbjct: 5 FLSHLQHERRLSPHTIKSYKLDLEQLHTFLNGIDPS--------QISTEDLRAWVVSLSE 56 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + +RS+ R L+ ++F +L+++KI +++ +++LK LP L E+ L + Sbjct: 57 DGLENRSINRKLASARAFFTFLQRKKIISQNPADLIKSLKTPKPLPVFLEERNTQDLFEQ 116 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + E R+ +L LLYG G+R+SE +S+ +++ +D+ +++ GK K RI+ Sbjct: 117 LEFTEDFE----GLRDKLLLELLYGTGIRLSELISIQVKDLENDR--VKVLGKRSKYRII 170 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 PL +++ I Y +L P + L +G+ L P QR ++ + + T Sbjct: 171 PLHRTLQDLIKRYLELHPKN-----DTHLLLTDKGEALYPVFVQRKVKHYLQQISTLTKT 225 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H LRH+FATHLL+ G DL +I+ +LGH LS TQIYT+ N + E++ + HP Sbjct: 226 SPHVLRHTFATHLLNRGADLNAIKELLGHANLSATQIYTH----NSIQKLKEVFQKAHP 280 >gi|113461442|ref|YP_719511.1| site-specific tyrosine recombinase XerC [Haemophilus somnus 129PT] gi|112823485|gb|ABI25574.1| tyrosine recombinase XerC subunit [Haemophilus somnus 129PT] Length = 291 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 97/310 (31%), Positives = 163/310 (52%), Gaps = 25/310 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q + L IER LS TL +Y+ + ++ L ++ IQ+ +Q++ + +R +++ Sbjct: 2 QKYYNYLRIERQLSPYTLINYQRQLEKIVVIL-----QQNDIQSWQQVTPSVVRFVLAQS 56 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + + +RSL LS ++ FL YL + ++ + + K+S LP+ ++ +Q V Sbjct: 57 RKEGLHERSLALRLSALRQFLNYLVVQGELKVNSAVGISAPKQSKYLPKNMDMEQ----V 112 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 +L + S E ID R+ A++ L+Y GLR+SE SL +I +R+ GKG+K R Sbjct: 113 QQLLTNESKEP--IDLRDKAMMELMYSSGLRLSELQSLNLNSINIRSREVRVIGKGNKER 170 Query: 199 IVPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 I+P +AI ++ + P D LF G ++ Q+ + Sbjct: 171 ILPFGRYASQAIQQWLKVRLLFNPKDE------ALFVSQLGNRISHRSIQKRMETWGIRQ 224 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 GL H LRHSFATH+L N DLR++Q +LGH LSTTQIYT+++ ++ + ++Y Sbjct: 225 GLNGHLNPHKLRHSFATHMLENSSDLRAVQELLGHSNLSTTQIYTHLDFQH----LAQVY 280 Query: 315 DQTHPSITQK 324 D+ HP +K Sbjct: 281 DKAHPRAKRK 290 >gi|218898984|ref|YP_002447395.1| tyrosine recombinase XerC [Bacillus cereus G9842] gi|228909656|ref|ZP_04073479.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 200] gi|228940919|ref|ZP_04103478.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973848|ref|ZP_04134424.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980438|ref|ZP_04140748.1| Tyrosine recombinase xerC [Bacillus thuringiensis Bt407] gi|218544580|gb|ACK96974.1| tyrosine recombinase XerC [Bacillus cereus G9842] gi|228779258|gb|EEM27515.1| Tyrosine recombinase xerC [Bacillus thuringiensis Bt407] gi|228785873|gb|EEM33876.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818755|gb|EEM64821.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228849945|gb|EEM94776.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 200] gi|326941600|gb|AEA17496.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis serovar chinensis CT-43] Length = 299 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 91/311 (29%), Positives = 159/311 (51%), Gaps = 31/311 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q ++ L+IER SK T+ SY+ D F+ F+ E+ I + ++Y ++R +++ Sbjct: 8 QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYLTTL 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137 +K+ +S+ R +S ++S ++L R+ + N + +L KK S+P+ L ++ Sbjct: 63 HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 118 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 L S + RN A+L L+Y G+R+SE ++L +I T+ + GKG K Sbjct: 119 --EELFEVSDTGTPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 176 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248 R +P + +++ Y + N QL +F +G PL + + Sbjct: 177 RYIPFGSYAQDSLITYIE------NGRKQLVNKTDEDSRMVFLNAKGTPLTSRGVRYVLN 230 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 +L + L + + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ + Sbjct: 231 ELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 286 Query: 309 WMMEIYDQTHP 319 + +Y + HP Sbjct: 287 RLRSVYMKHHP 297 >gi|296268973|ref|YP_003651605.1| integrase family protein [Thermobispora bispora DSM 43833] gi|296091760|gb|ADG87712.1| integrase family protein [Thermobispora bispora DSM 43833] Length = 292 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 90/301 (29%), Positives = 149/301 (49%), Gaps = 25/301 (8%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +ER LS T+++Y D L E+I +L T++RA++ ++ + Sbjct: 9 LRLERDLSPHTVRAYLGDVASLFAHLRATGRERIA-----ELDITDLRAWLGEQHRAGLS 63 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 +L R ++ ++F + +R + K LP L ++QA + + Sbjct: 64 RTTLARRIACARTFTAFCHRRGWLAHDPGPLLGTTKAERRLPAVLTQEQAQAALSPPV-- 121 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 S + K + R+ AI+ LLY G+R+SE +L ++ +++T+R+ GKG K R VP Sbjct: 122 -SGDPK--ELRDHAIMELLYATGIRVSELCALDLGDVDRERNTIRVMGKGRKERTVPFGQ 178 Query: 205 SVRKAILEYYDLC----PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 +A+ + C P + LF G+RG ++PG +R + R G+P + Sbjct: 179 PAARALDAW---CVRGRPQWVRDGTPPALFLGVRGGRIDPGTVRRVVHA--RLAGVPGAP 233 Query: 261 T--AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 H +RH+ ATHLL G DLRS+Q ILGH L+TTQ+YT+V+ + + Y Q H Sbjct: 234 GMGPHGIRHTMATHLLEGGADLRSVQEILGHASLATTQLYTHVSIER----LRAAYRQAH 289 Query: 319 P 319 P Sbjct: 290 P 290 >gi|169827277|ref|YP_001697435.1| tyrosine recombinase xerD [Lysinibacillus sphaericus C3-41] gi|168991765|gb|ACA39305.1| Tyrosine recombinase xerD [Lysinibacillus sphaericus C3-41] Length = 300 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 97/309 (31%), Positives = 152/309 (49%), Gaps = 27/309 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++++ +++ER LS TL SY D ++ FL + + + T I + + Sbjct: 9 EDYIHFIQVERQLSVNTLASYRRDLESYVNFL----QNAEGMANFNHIERTTILRHLEQL 64 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R Q R++ R +S I+SF ++L + K +++ LP L+ ++ Sbjct: 65 RVQGKTSRTIARHISSIRSFHQFLLREKRAESDPTVHLEMPTIEQKLPNILSIEEI---- 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL + +K R+ A+L LLYG G+RISE ++L ++ +R+ GKG K R Sbjct: 121 -EALLTAPNRSKPQGIRDLAMLELLYGSGMRISELIALDLADLHLTMGFVRVFGKGGKER 179 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQL--------PLFRGIRGKPLNPGVFQRYIRQL 250 I+PL S AI Y + N QL F RGK L + +++ Sbjct: 180 IIPLGKSALSAISTYLN------NARGQLQGKYPKTDAFFINQRGKRLTRQGCWKLMKEH 233 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ T HTLRHSFATHL+ NG DLR++Q +LGH +STTQIYT+++ + Sbjct: 234 ALKAGIQHELTPHTLRHSFATHLVENGADLRAVQEMLGHADISTTQIYTHISKTR----L 289 Query: 311 MEIYDQTHP 319 E+Y Q HP Sbjct: 290 SEVYKQFHP 298 >gi|332704140|ref|ZP_08424228.1| Tyrosine recombinase xerC [Desulfovibrio africanus str. Walvis Bay] gi|332554289|gb|EGJ51333.1| Tyrosine recombinase xerC [Desulfovibrio africanus str. Walvis Bay] Length = 322 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 92/307 (29%), Positives = 158/307 (51%), Gaps = 16/307 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L++L + +GLS+ +L +Y D F L F TE+ + ++ R T + + RR Sbjct: 21 YLEHLLVSKGLSENSLTAYATD---FESLLEFLTEKALPME--RVTPQTLLLYLLHLRR- 74 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + +G+RS+ R LS ++ F + + E+ + N K +LP L+ ++ V+ Sbjct: 75 KGLGNRSMARHLSALRGFFAFALEEGWLVENPAELLENPKLPQTLPEVLSREE----VER 130 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 +L TK + R+ A+L LLY GLR+SE + L P + LR+ GKG K R+V Sbjct: 131 MLERPDTRTK-LGFRDRAMLELLYAAGLRVSELVDLRPLDFDPQTGVLRVFGKGSKERLV 189 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 PL ++ +L Y + ++ +F GK L + I++ G+ Sbjct: 190 PLHDLAQRFVLAYLESWRNSFK-PLEEHMFLNRSGKGLTRQAIWKLIKRYALEAGIFREI 248 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 + HT+RHSFATHLL G DLR++Q +LGH +S T+IYT++ + ++ ++ + HP Sbjct: 249 SPHTMRHSFATHLLEGGADLRTVQILLGHADISATEIYTHLQTSR----LLAVHREHHPR 304 Query: 321 ITQKDKK 327 +K + Sbjct: 305 SARKSGR 311 >gi|332666489|ref|YP_004449277.1| Tyrosine recombinase xerC [Haliscomenobacter hydrossis DSM 1100] gi|332335303|gb|AEE52404.1| Tyrosine recombinase xerC [Haliscomenobacter hydrossis DSM 1100] Length = 297 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 92/303 (30%), Positives = 154/303 (50%), Gaps = 16/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA--FYTEEKITIQTIRQLSYTEIRAFIS 76 + +L+ L+ E+ S T+++Y+ D QF +L + E TIQ I IR++ Sbjct: 4 EKFLRYLQYEKRFSVHTIEAYQSDLVQFSTYLQSQYEIAEPTTIQHI------HIRSWAV 57 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 QK +++R LS +KS+ +YL++ KI + S +L + K LP + EK Sbjct: 58 SLMEQKNAATTIRRKLSTLKSYFRYLQREKIISRSPMLQVSLPKLGKRLPVVVPEKSLDK 117 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L+D V T + R+ ++ LLY G+R +E LSL ++ T+++ GKG+K Sbjct: 118 LLDPV----ETPTDYTGLRDQVVIELLYLTGMRRAELLSLKVSDLNLHTHTIKVLGKGNK 173 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 R++P+ + + Y + ++Q LF RG+P P + R + + Sbjct: 174 ERLIPMGHATVGLLKLYLETRRETFPDSMQTALFLTDRGEPAYPKLIYRIVNGYLSTVTT 233 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRHSFATHL +G +L +I+ +LGH L+ TQIYT+ + + + +IY Q Sbjct: 234 QEKRSPHVLRHSFATHLSDHGANLNAIKELLGHSSLAATQIYTH----HSIERLKKIYQQ 289 Query: 317 THP 319 HP Sbjct: 290 AHP 292 >gi|331012748|gb|EGH92804.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 299 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 96/306 (31%), Positives = 151/306 (49%), Gaps = 21/306 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 + +L ER +S TL++Y D + L + +K + + L +R+F +++ Sbjct: 8 YCMHLRSERQVSPHTLEAYRRDLGKVLAYC-----QKAQLSSWNDLDIQHLRSFTARQHQ 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q RSL R LS ++ F KYL + I + K LP+ L+ + L+D Sbjct: 63 QGQSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGDRRLPKTLDTDRTAQLLDG 122 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + E ++ R+ AIL LLY GLR+SE L + +++ GKG K R++ Sbjct: 123 GV-----EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVL 177 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPL 258 P+ R+A LE + P N Q +F +GK L P Q ++ R LG L Sbjct: 178 PVGSKARQA-LEIW--LPLRALTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGERELGQNL 234 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 H LRHSFA+HLL + DLR++Q +LGH + TTQIYT+++ ++ + +YD H Sbjct: 235 HP--HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATVYDSAH 288 Query: 319 PSITQK 324 P +K Sbjct: 289 PRAKRK 294 >gi|228960047|ref|ZP_04121711.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pakistani str. T13001] gi|228799563|gb|EEM46516.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pakistani str. T13001] Length = 299 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 89/308 (28%), Positives = 161/308 (52%), Gaps = 25/308 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q ++ L+IER SK T+ SY+ D F+ F+ E+ I + ++Y ++R +++ Sbjct: 8 QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYLTTL 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137 +K+ +S+ R +S ++S ++L R+ + N + +L KK S+P+ L ++ Sbjct: 63 YDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 118 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 L S + RN A+L L+Y G+R+SE ++L +I T+ + GKG K Sbjct: 119 --EELFEVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 176 Query: 198 RIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 R +P + +++ Y + + D + ++ +F +G PL + + +L Sbjct: 177 RYIPFGSYAQDSLITYIENGRKQLVNKTDEDSHM---VFLNAKGTPLTSRGVRYVLNELI 233 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 + L + + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ + + Sbjct: 234 KKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----ERLR 289 Query: 312 EIYDQTHP 319 +Y + HP Sbjct: 290 SVYMKHHP 297 >gi|121595977|ref|YP_987873.1| tyrosine recombinase XerC [Acidovorax sp. JS42] gi|120608057|gb|ABM43797.1| tyrosine recombinase XerC [Acidovorax sp. JS42] Length = 323 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 92/336 (27%), Positives = 158/336 (47%), Gaps = 30/336 (8%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 N P V+ L E +L+++ +E+ L+ TL Y D ++ A + + + Sbjct: 2 NGTP--VALHLPPEALQYLEHVRVEKRLAARTLTLYTLDLQRLAAMAA-----GVDLPLL 54 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 R L+ IR F+++ R + LSG + F + ++ + + + ++R K Sbjct: 55 R-LTSAHIRRFVAQMHAGGRSGRGIALILSGWRGFYTWAARQGLVPHNPVQDVRAPKAPK 113 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNI 181 LP+AL +A+ L ++ + W++ R++AI+ LLYGCGLR+ E L + P Sbjct: 114 PLPKALPVDEAVRLAEH---QETGADPWLETRDAAIVELLYGCGLRVGELVGLDVAPSPA 170 Query: 182 MDDQS---------TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLP 228 Q + GKG K R VP+ +++ + + ++ Sbjct: 171 AHQQGRGWVDLQAGEAHVFGKGSKRRSVPVGRAAAAALQAWLAQRALPLGAAGAARLEPA 230 Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288 LF G RG L +RQ + GL H LRHSFA+HLL + GDLR++Q +LG Sbjct: 231 LFIGRRGARLTAQSVWSRLRQRSQVAGLTTPVHPHMLRHSFASHLLQSSGDLRAVQELLG 290 Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 H ++TTQ+YT ++ ++ + +YD HP +K Sbjct: 291 HANITTTQVYTRLDFQH----LARVYDAAHPRARRK 322 >gi|147677583|ref|YP_001211798.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI] gi|189030080|sp|A5D2W6|XERC_PELTS RecName: Full=Tyrosine recombinase xerC gi|146273680|dbj|BAF59429.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI] Length = 306 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 95/306 (31%), Positives = 157/306 (51%), Gaps = 16/306 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 N+L L +E+ S T +SY+ D L + A ++ + + R +++ + Sbjct: 7 NFLVYLRVEKNASPRTTESYQKDLFHGLDYFASRLGKEDHAIVPSDIDHRIFRHYLAHMQ 66 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q + ++ R L+ +SF +YL + KI + +L + + K LPR L E +A LV+ Sbjct: 67 KQGLARATMARRLAAWRSFYRYLYREKIIDGNPLLRVASPKLEKRLPRFLYEDEAKELVE 126 Query: 140 NVLLHTSHETKW-IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + +TK + R+ A+L LY GLRISE + L ++ +R+ GK + R Sbjct: 127 ------APDTKQPLGMRDRALLETLYAGGLRISELVLLDLGDLDISSGYIRVTGKRARER 180 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLN-----IQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 +VPL +A+ Y L N I LF RG+ L+ ++ + + Sbjct: 181 LVPLGSMAVEALQAYLAKARPRLMANSVAKKINNALFLNCRGERLSARGIRKILDKYVEK 240 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 + L + HTLRHSFATHLL+ G DLRS+Q ++GH RLS+TQ+YT+V G+ + ++ Sbjct: 241 VSLERKISPHTLRHSFATHLLNAGADLRSVQELMGHVRLSSTQVYTHVT----GERLKKV 296 Query: 314 YDQTHP 319 Y ++HP Sbjct: 297 YRKSHP 302 >gi|291301889|ref|YP_003513167.1| tyrosine recombinase XerD [Stackebrandtia nassauensis DSM 44728] gi|290571109|gb|ADD44074.1| tyrosine recombinase XerD [Stackebrandtia nassauensis DSM 44728] Length = 301 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 91/308 (29%), Positives = 157/308 (50%), Gaps = 23/308 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK- 77 +++L ++ +ERG S T+ +Y D ++L +L+ + + + Q++ +I ++++ Sbjct: 7 RDYLDHVTVERGHSANTIAAYRRDLGRYLDWLS-----ETGLDALSQVTAADIGGYLARL 61 Query: 78 ----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 + RS+ R+ S ++ ++ +T + K + LP+A+ + Sbjct: 62 SQGDDEHPGLSARSIARATSALRGLHRFALDEGVTDTDPTQALSTPKPALRLPKAIGVDE 121 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L++ + + T R++A++ LYG G R+SE + ++ D + +R++GK Sbjct: 122 VARLLEAAAI-LDNPTGL---RDTALVEFLYGTGARVSETIGADIDDLDFDAAAVRLRGK 177 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLN-PGVFQRYIRQLR 251 G K+R+VPL +A+ Y L + P LF RGKPL GVF +R L Sbjct: 178 GGKVRVVPLGGYAVRALENY--LTRARPSWTPGHPKLFVNSRGKPLTRQGVFF-ILRGLA 234 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 G+ + HTLRHSFATHLL G D+R +Q +LGH +STTQIYT V D + Sbjct: 235 DRAGMAVDLGPHTLRHSFATHLLDGGADIRVVQELLGHAAVSTTQIYTLVTV----DKLR 290 Query: 312 EIYDQTHP 319 E+Y +HP Sbjct: 291 EVYATSHP 298 >gi|254513968|ref|ZP_05126029.1| tyrosine recombinase XerD [gamma proteobacterium NOR5-3] gi|219676211|gb|EED32576.1| tyrosine recombinase XerD [gamma proteobacterium NOR5-3] Length = 302 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 93/302 (30%), Positives = 152/302 (50%), Gaps = 16/302 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + +E+GLS+ TL +Y D + F + + T + T + R T+I A+++ Sbjct: 14 ETYLDAVWMEKGLSENTLAAYRRDLQSFARWAS--TRNRSTTKVAR----TDIEAYLAYL 67 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 K RS R+LS ++ + ++L + E L + + + LP+ L+E Sbjct: 68 LAHKRSPRSAARALSCLRGYYRHLLRSGQLKEDPTLGLDSPRLGRPLPKTLSEADV---- 123 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + LL + + I R+ +L LLY CGLR+SE LT + +Q +RI GKG K R Sbjct: 124 -DALLQAPNLEELIGFRDRCMLELLYACGLRVSELTGLTVSQLSLNQGVVRISGKGGKER 182 Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ + Y ++ P L LF R + + F I+Q G+ Sbjct: 183 LVPVGEEALHWLQRYLREIRPQLLGETSSEVLFPSRRAQMMTRQTFWHRIKQHAITAGIH 242 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + H LRH+FATHL+++G DLR +Q +LGH LSTTQIYT+V + + ++ + Sbjct: 243 KPISPHVLRHAFATHLVNHGADLRVVQLLLGHSDLSTTQIYTHVARQR----LQSLHAKH 298 Query: 318 HP 319 HP Sbjct: 299 HP 300 >gi|33242394|ref|NP_877335.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae TW-183] gi|33236905|gb|AAP98992.1| tyrosine recombinase [Chlamydophila pneumoniae TW-183] gi|269302825|gb|ACZ32925.1| tyrosine recombinase XerD [Chlamydophila pneumoniae LPCoLN] Length = 299 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 96/300 (32%), Positives = 151/300 (50%), Gaps = 26/300 (8%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L ++RGL + ++ +Y D FL A I + + +S + F + +K Sbjct: 18 LSVDRGLCQQSIAAYRQDISSFLTISA--------ISSPQDISQNSVYIFAEELYRRKEA 69 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 + +L R L +K F +LK +++ I+ + K LP L ++ L+ V L Sbjct: 70 ETTLARRLIALKVFFLFLKDQQLLPYPPIIEHPKIWKR--LPSVLTPQEVDALL-AVPLQ 126 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + + R++AIL+ LY G+R+SE L ++ DD +R+ GKG K R+VPL Sbjct: 127 MEKNPRHLAFRDTAILHTLYSTGVRVSELCDLRLGHVSDD--CIRVTGKGSKTRLVPLGS 184 Query: 205 SVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLN-PGVFQRYIRQLRRYLGLPLS 259 R+AI Y LCPF + P LF RG L V++R ++ P+S Sbjct: 185 RAREAIDAY--LCPFRDQYQKKNPHEDHLFLSTRGHKLERSCVWRRIHNYAKQVTSKPVS 242 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H+LRH+FATHLL N DLR IQ +LGH R+++T++YT+V D ++E + HP Sbjct: 243 --PHSLRHAFATHLLDNKADLRVIQEMLGHARIASTEVYTHV----AADSLIEKFLAHHP 296 >gi|15618932|ref|NP_225218.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae CWL029] gi|15836555|ref|NP_301079.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae J138] gi|16752001|ref|NP_445367.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae AR39] gi|34223088|sp|Q9Z6N5|XERD_CHLPN RecName: Full=Tyrosine recombinase xerD gi|4377356|gb|AAD19161.1| Integrase/recombinase [Chlamydophila pneumoniae CWL029] gi|7189741|gb|AAF38621.1| integrase/recombinase XerD [Chlamydophila pneumoniae AR39] gi|8979397|dbj|BAA99231.1| integrase/recombinase [Chlamydophila pneumoniae J138] Length = 301 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 96/300 (32%), Positives = 151/300 (50%), Gaps = 26/300 (8%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L ++RGL + ++ +Y D FL A I + + +S + F + +K Sbjct: 20 LSVDRGLCQQSIAAYRQDISSFLTISA--------ISSPQDISQNSVYIFAEELYRRKEA 71 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 + +L R L +K F +LK +++ I+ + K LP L ++ L+ V L Sbjct: 72 ETTLARRLIALKVFFLFLKDQQLLPYPPIIEHPKIWKR--LPSVLTPQEVDALL-AVPLQ 128 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + + R++AIL+ LY G+R+SE L ++ DD +R+ GKG K R+VPL Sbjct: 129 MEKNPRHLAFRDTAILHTLYSTGVRVSELCDLRLGHVSDD--CIRVTGKGSKTRLVPLGS 186 Query: 205 SVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLN-PGVFQRYIRQLRRYLGLPLS 259 R+AI Y LCPF + P LF RG L V++R ++ P+S Sbjct: 187 RAREAIDAY--LCPFRDQYQKKNPHEDHLFLSTRGHKLERSCVWRRIHNYAKQVTSKPVS 244 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H+LRH+FATHLL N DLR IQ +LGH R+++T++YT+V D ++E + HP Sbjct: 245 --PHSLRHAFATHLLDNKADLRVIQEMLGHARIASTEVYTHV----AADSLIEKFLAHHP 298 >gi|240949807|ref|ZP_04754136.1| site-specific tyrosine recombinase XerD [Actinobacillus minor NM305] gi|240295724|gb|EER46419.1| site-specific tyrosine recombinase XerD [Actinobacillus minor NM305] Length = 297 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 96/303 (31%), Positives = 150/303 (49%), Gaps = 18/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L E GLS T+ SY D L+ +TE + + + ++ F+ R Sbjct: 9 EQFLDTLWQEHGLSDNTVSSYRLD-------LSLFTEWLDEPRAFLTVDHHTLQEFLGYR 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q S R LS ++ F ++L + + + +K + LP+ LNE+Q + L Sbjct: 62 FDQGYKASSSLRMLSCLRKFFRFLYLENYRKDDPTAMLISPRKPSRLPKTLNEEQVMDL- 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L + I+ R+ A+L LLY GLR++E +SLT +N+ Q +RI GKGDK R Sbjct: 121 ----LECPNPLDPIELRDKAMLELLYATGLRVTELISLTTENLSLRQGVVRIIGKGDKER 176 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL I E++ LN +F RG+ + F I+ G+ Sbjct: 177 LVPLGEEASYWIQEFFQYGRGILLNNEPSNVVFPSKRGQMMTRQTFWHRIKHYAVLAGID 236 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHL+++G DLR +Q +LGH LSTTQIYT+V + ++++ Sbjct: 237 SEKLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKAR----LKSLHEK 292 Query: 317 THP 319 HP Sbjct: 293 YHP 295 >gi|330501235|ref|YP_004378104.1| site-specific tyrosine recombinase XerC [Pseudomonas mendocina NK-01] gi|328915521|gb|AEB56352.1| site-specific tyrosine recombinase XerC [Pseudomonas mendocina NK-01] Length = 298 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 93/309 (30%), Positives = 153/309 (49%), Gaps = 27/309 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L++L ER +S TL Y D + L F E + +L +R +++ Sbjct: 8 YLEHLRRERQVSVHTLDGYRRDLGKVLAFC-----EAEGLSDWAELDTRNLRRLVARLHQ 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q + RSL R LS + +YL + + + K+ LPR L+ ++ L+D Sbjct: 63 QGLSSRSLARLLSATRGLYQYLLREGLCRHDPATGLSPPKRERRLPRTLDADRSAQLLDG 122 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + E +I R+ A+L L Y GLR+SE + L + +R++GKG+K+R + Sbjct: 123 AV-----EDDFIARRDQAMLELFYSSGLRLSELVGLDLDGLDLPAGLIRVRGKGNKVREL 177 Query: 201 PLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR-RYLG 255 P+ R+A+ ++ L P D +F +G+ L P Q + Q R LG Sbjct: 178 PVGSLARQALEQWLPLRKLANPSDG------AVFISQQGRRLGPRAVQLRVHQAGVRELG 231 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 L H LRHSFA+H+L + DLR++Q +LGH ++TTQIYT+++ ++ + +YD Sbjct: 232 QHLHP--HMLRHSFASHMLESSQDLRAVQELLGHADIATTQIYTHLDFQH----LANVYD 285 Query: 316 QTHPSITQK 324 Q HP +K Sbjct: 286 QAHPRAKRK 294 >gi|332184671|gb|AEE26925.1| Tyrosine recombinase xerD [Francisella cf. novicida 3523] Length = 292 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 92/300 (30%), Positives = 145/300 (48%), Gaps = 18/300 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L NL +E GLS+ T+ SY D + E + L + ++ AFIS R Sbjct: 8 FLDNLWLEHGLSQNTISSYRTDLKLL--------ENYFAKTDLISLDFEQLYAFISYRSK 59 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 RS R +S ++ F +L T + + K + LP+ + E Sbjct: 60 NGYSSRSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDV-----E 114 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LLH T+ + R+ A+L L+Y GLR+SE + L +I + +++ GKG K RIV Sbjct: 115 RLLHAPDMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIV 174 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ + + +Y+ L+ N + +F K + F I+ G+ Sbjct: 175 PIGEYALEYLQKYFAEARMSLSKNFKEKAVFISKHTKRITRQSFWHRIKNYALIAGINTD 234 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLRS+Q +LGH +STT IYT+++ + EIY + HP Sbjct: 235 ISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR----LQEIYQKHHP 290 >gi|239631511|ref|ZP_04674542.1| tyrosine recombinase XerC subunit [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239525976|gb|EEQ64977.1| tyrosine recombinase XerC subunit [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 298 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 93/294 (31%), Positives = 147/294 (50%), Gaps = 14/294 (4%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 LE+ER S T+ +Y D ++F FL + R + +++ +++ Q + Sbjct: 11 LEVERQYSPETVTAYLSDLQEFQAFL----KANGGFTDFRHVDDLDVQTYLTDLNKQDLA 66 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQALTLVDNVLL 143 S+ R +S ++SF +YL + + +SN + LKK + LP+ E + L V Sbjct: 67 RTSIARKISSLRSFYRYLTRIDVV-KSNPFELVELKKQHHHLPQFFYEAEIQELFKTVAG 125 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 T +D RN A+L +LYG G+R+SE LT + + + L I GKG+K R VP Sbjct: 126 KTP-----LDQRNRALLEVLYGTGIRVSECAKLTLNQVDFNTALLLIHGKGNKDRYVPFG 180 Query: 204 PSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 ++A+ Y L Q +F G+P+ + + QL + L + Sbjct: 181 QYAQQALRTYLKDGRQVLMAKSQAQHRYVFVNQYGRPITSRGIEYILDQLIKQTTLTANI 240 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 H LRHSFATH+L +G DLR++Q +LGH LSTTQIYT+V + + M+ Y Sbjct: 241 HPHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEYMKYY 294 >gi|291004130|ref|ZP_06562103.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] Length = 301 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 85/298 (28%), Positives = 142/298 (47%), Gaps = 9/298 (3%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 ++L+ ERGLS T+++Y D L EE+ + + L T +R +++ + Sbjct: 10 RHLKAERGLSAHTVRAYIGDVVSLLDHFCAGDEER---KGLNGLGLTVLREWLAAQHADG 66 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 +L R + ++F + + ++ + LP L +QA + + + Sbjct: 67 ASRSTLARRAASARTFTAWAHRAELLPHDPGPRLAAPAPKRKLPTVLRAEQAKSAM-SAS 125 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202 + + I R+ A++ LLY G+R+SE L ++ ++ +R+ GKGDK R VP Sbjct: 126 QAGAEQGDPIALRDHAVVELLYATGVRVSELCGLDLDDVDHERRVVRVIGKGDKERAVPF 185 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 A+ + +L + P LF G RG L+P +R + + Sbjct: 186 GVPAEDAVSRWISAGRPELATDASGPALFLGARGGRLDPRAVRRVVHDAVGAVSGATDVG 245 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHS ATHLL G DLRS+Q +LGH L+TTQ+YT+V + + I+D+THP Sbjct: 246 PHGLRHSAATHLLEGGADLRSVQELLGHATLATTQLYTHVTVER----LKAIHDRTHP 299 >gi|308173576|ref|YP_003920281.1| site-specific tyrosine recombinase [Bacillus amyloliquefaciens DSM 7] gi|307606440|emb|CBI42811.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus amyloliquefaciens DSM 7] gi|328553491|gb|AEB23983.1| site-specific tyrosine recombinase XerC [Bacillus amyloliquefaciens TA208] gi|328911717|gb|AEB63313.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus amyloliquefaciens LL3] Length = 305 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 88/302 (29%), Positives = 151/302 (50%), Gaps = 17/302 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +++ L+IE+ S+ T+ +Y +F +FL I + + +Y ++R F+++ Sbjct: 12 FVEYLQIEKNYSQYTIVNYVNSIEEFGMFL-----HAQNINGLNEAAYHDVRIFLTEAYE 66 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + +++ + +S ++SF K+L + K+ E+ + K+ +P+ L EK+ Sbjct: 67 KGLSRKTISKKISALRSFYKFLMREKLVEENPFQLVHLPKQEKRIPKFLYEKEL-----E 121 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 L S ++ R+ A+L LLY G+R+SE +LT ++ T+ + GKG K R + Sbjct: 122 ELFAVSDRSQPSGMRDQALLELLYATGMRVSECCTLTVSDLDLFMDTVLVHGKGRKQRYI 181 Query: 201 PLLPSVRKAILEYYD---LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 P R A+ Y + C + LF RG PL + + L + Sbjct: 182 PFGSYARDALELYINSGRQCLLEKAKEPHDVLFVNQRGGPLTARGIRYILSGLVKKASGT 241 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 L H LRH+FATHLL+ G DLRS+Q +LGH LS+TQIYT+V+ + + Y Sbjct: 242 LHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSK----EMLRNTYMSH 297 Query: 318 HP 319 HP Sbjct: 298 HP 299 >gi|28867454|ref|NP_790073.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato str. DC3000] gi|213970725|ref|ZP_03398850.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato T1] gi|81732947|sp|Q88B11|XERC_PSESM RecName: Full=Tyrosine recombinase xerC gi|28850688|gb|AAO53768.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato str. DC3000] gi|213924559|gb|EEB58129.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato T1] Length = 299 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 93/306 (30%), Positives = 150/306 (49%), Gaps = 21/306 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 + +L ER +S TL++Y D + L + +K + + L +R+F +++ Sbjct: 8 YCMHLRSERQVSPHTLEAYRRDLSKVLAYC-----QKARLSSWNDLDIQHLRSFTARQHQ 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q RSL R LS ++ F KYL + + + K LP+ L+ + L+D Sbjct: 63 QGQSSRSLARMLSAVRGFYKYLNREGLCQHDPANGLSPPKGERRLPKTLDTDRTAQLLDG 122 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + E ++ R+ AI+ LLY GLR+SE L + +++ GKG K R++ Sbjct: 123 GV-----EDDFLAHRDQAIMELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVL 177 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPL 258 P+ R+A+ + P N Q +F +GK L P Q I+ R LG L Sbjct: 178 PVGSKARQALETW---LPLRALTNPQDDAVFVSQQGKRLGPRAVQLRIKTAGERELGQNL 234 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 H LRHSFA+HLL + DLR++Q +LGH + TTQIYT+++ ++ + +YD H Sbjct: 235 HP--HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATVYDSAH 288 Query: 319 PSITQK 324 P +K Sbjct: 289 PRAKRK 294 >gi|330952167|gb|EGH52427.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae Cit 7] Length = 299 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 92/305 (30%), Positives = 150/305 (49%), Gaps = 19/305 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 + +L ER +S TL++Y D + L + +K + + L +R+F +++ Sbjct: 8 YCMHLRSERQVSPHTLEAYRRDLGKVLAYC-----QKARLSSWSDLDIQHLRSFTARQHQ 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q RSL R LS ++ F KYL + I + K LP+ L+ + L+D Sbjct: 63 QGQSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRTAQLLDG 122 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + E ++ R+ AIL LLY GLR+SE L + +++ GKG K R++ Sbjct: 123 GV-----EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVL 177 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPLS 259 P+ R+A+ + L L +F ++G+ L P Q ++ R LG L Sbjct: 178 PVGSKARQALEVWLPLRA--LTHPQDDAVFVSLQGRRLGPRAIQVRLKAAGERELGQNLH 235 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHSFA+HLL + DLR++Q +LGH + TTQIYT+++ ++ + +YD HP Sbjct: 236 P--HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATVYDSAHP 289 Query: 320 SITQK 324 +K Sbjct: 290 RAKRK 294 >gi|29348252|ref|NP_811755.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|253569382|ref|ZP_04846792.1| integrase [Bacteroides sp. 1_1_6] gi|298386055|ref|ZP_06995612.1| tyrosine recombinase XerD [Bacteroides sp. 1_1_14] gi|29340155|gb|AAO77949.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|251841401|gb|EES69482.1| integrase [Bacteroides sp. 1_1_6] gi|298261283|gb|EFI04150.1| tyrosine recombinase XerD [Bacteroides sp. 1_1_14] Length = 319 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 92/286 (32%), Positives = 155/286 (54%), Gaps = 13/286 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + Q L++E+ LS TL +Y D + + FL T E I + ++ ++++ F + Sbjct: 18 RKYQQYLKLEKSLSPNTLDAYLTDLDKLMSFL---TLEGIDVL---EVCLSDLQRFAAGL 71 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 I RS R LSGIKSF ++L + K LP L ++ + Sbjct: 72 HDIGIHPRSQARILSGIKSFFRFLIMADYLEADPSELLEGPKIGLKLPEVLTVEE----I 127 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 DN++ + +K RN AIL LY CGLR+SE +SL ++ D+ ++++GKG K R Sbjct: 128 DNII-SSVDRSKAEGQRNRAILETLYSCGLRVSELVSLKLSDLYFDEGFIKVEGKGSKQR 186 Query: 199 IVPLLP-SVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGL 256 +VP+ P ++ + L + D ++ + + +F R GK L+ + I++L + G+ Sbjct: 187 LVPISPRAINEIKLYFLDRNRIEVKKDYEDFVFVSQRRGKSLSRIMIFHMIKELAQNAGI 246 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ Sbjct: 247 TKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHID 292 >gi|323341690|ref|ZP_08081923.1| tyrosine recombinase XerC [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464115|gb|EFY09308.1| tyrosine recombinase XerC [Erysipelothrix rhusiopathiae ATCC 19414] Length = 296 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 92/297 (30%), Positives = 154/297 (51%), Gaps = 19/297 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++++++ I S+ T +YE D RQFL F+ E + + R ++Y +++ Sbjct: 9 DFMRHIAITNTSSEHTNVAYERDIRQFLDFI----EGQAVHEVDRLMAYD----YLNMLY 60 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + S+ R +S ++SF K+L+ T++ ++ ++ LP L + TL+ Sbjct: 61 DSNLSSSSVARKISTLRSFYKFLQINYGLTDNPFQQIKIKRQGRHLPHFLMYDEIETLL- 119 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 S + + RN ++ L+Y CGLR+SE + L ++ + +LR+ GKG+K R Sbjct: 120 -----LSCDESVLGVRNQVMIELMYACGLRVSEVVDLQIHDLDLTERSLRVIGKGNKERQ 174 Query: 200 VPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 + S+ + Y +L P N++ +F RGKPL P Q + + GL + Sbjct: 175 LFFYESLVPKLWSYLNLYRPQFPNVSDTEAVFLNQRGKPLTPRGIQHILEHQGKTAGLRM 234 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 H LRHSFATHLL NG LR +Q++LGH LSTTQIYT+V+ + + E+YD Sbjct: 235 KLHPHMLRHSFATHLLDNGASLRVVQTLLGHESLSTTQIYTHVSMQK----IKEVYD 287 >gi|291484165|dbj|BAI85240.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp. natto BEST195] Length = 304 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 90/308 (29%), Positives = 155/308 (50%), Gaps = 17/308 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +++ L+IE+ S+ T+ +Y +F FL I + +Y + R F+++ Sbjct: 11 FVEYLQIEKNNSQYTIVNYVDSIEEFETFLRVQG-----INGFEEAAYQDTRIFLTEAYE 65 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + R++ + +S ++SF K+L + K+ E+ + K+ +P+ L +K+ L + Sbjct: 66 KGLSRRTISKKISALRSFYKFLMREKLIEENPFQLVHLPKQEKRIPKFLYQKELEELFE- 124 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 S ++ R+ A+L LLY G+R+SE S+T ++ T+ + GKG K R + Sbjct: 125 ----VSDISQPAGMRDQALLELLYATGMRVSECCSITINDVDLFMDTVLVHGKGKKQRYI 180 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 P R+A+ Y + L + + P LF RG PL + + L + Sbjct: 181 PFGSYAREALKVYMNSGRQCLLMKAKEPHDLLFVNQRGGPLTARGIRHILSGLVQKASST 240 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 L H LRH+FATHLL+ G DLRS+Q +LGH LS+TQIYT+V+ + + Y Sbjct: 241 LHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSK----EMLRNTYMSH 296 Query: 318 HPSITQKD 325 HP +K+ Sbjct: 297 HPRAFKKN 304 >gi|206576348|ref|YP_002236649.1| tyrosine recombinase XerD [Klebsiella pneumoniae 342] gi|290511308|ref|ZP_06550677.1| tyrosine recombinase XerD [Klebsiella sp. 1_1_55] gi|206565406|gb|ACI07182.1| tyrosine recombinase XerD [Klebsiella pneumoniae 342] gi|289776301|gb|EFD84300.1| tyrosine recombinase XerD [Klebsiella sp. 1_1_55] Length = 298 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 93/307 (30%), Positives = 159/307 (51%), Gaps = 17/307 (5%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 L + + +L L +ER L++ TL +Y R + + + +++ ++ +++A Sbjct: 5 LAQIEQFLDALWLERNLAENTLSAYR---RDLTMLVEWLHHRGLSLASV---GSDDLQAL 58 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 +++R+T S R LS ++ F ++L + KI + + + K LP+ L+E Q Sbjct: 59 LAERQTGGYKATSTARLLSAVRRFFQHLYREKIRPDDPSALLASPKLPQRLPKDLSEAQV 118 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 L+ L+ ++ R+ A+L +LY GLR+SE + LT +I Q LR+ GKG Sbjct: 119 ERLLQAPLVEQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVLRVIGKG 173 Query: 195 DKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 +K R+VPL + Y + P+ LN LF R + + F I+ Sbjct: 174 NKERLVPLGEEAVMWVENYLEYGRPWLLNGVASDVLFPSQRAQQMTRQTFWHRIKHYAVL 233 Query: 254 LGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 G+ + + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + + Sbjct: 234 AGIDSAKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQ 289 Query: 313 IYDQTHP 319 ++ Q HP Sbjct: 290 LHQQHHP 296 >gi|330870011|gb|EGH04720.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330892013|gb|EGH24674.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. mori str. 301020] Length = 290 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 96/303 (31%), Positives = 150/303 (49%), Gaps = 21/303 (6%) Query: 24 NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83 +L ER +S TL++Y D + L + +K + + L +R+F +++ Q Sbjct: 2 HLRSERQVSPHTLEAYRRDLGKVLAYC-----QKAQLSSWNDLDIQHLRSFTARQHQQGQ 56 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 RSL R LS ++ F KYL + I + K LP+ L+ + L+D + Sbjct: 57 SSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGV- 115 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 E ++ R+ AIL LLY GLR+SE L + +++ GKG K R++P+ Sbjct: 116 ----EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVG 171 Query: 204 PSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPLSTT 261 R+A LE + P N Q +F +GK L P Q ++ R LG L Sbjct: 172 SKARQA-LEIW--LPLRALTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGERELGQNLHP- 227 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321 H LRHSFA+HLL + DLR++Q +LGH + TTQIYT+++ ++ + +YD HP Sbjct: 228 -HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATVYDSAHPRA 282 Query: 322 TQK 324 +K Sbjct: 283 KRK 285 >gi|218961949|ref|YP_001741724.1| site-specific recombinase, phage integrase family [Candidatus Cloacamonas acidaminovorans] gi|167730606|emb|CAO81518.1| site-specific recombinase, phage integrase family [Candidatus Cloacamonas acidaminovorans] Length = 298 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 99/295 (33%), Positives = 146/295 (49%), Gaps = 21/295 (7%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEE-KITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 G S T+ +Y+ D QF F+ Y E ++ I+ I L+ IR F + +RSL Sbjct: 16 GKSPRTITAYKLDLEQFHSFIQRYFENGEVDIKGITVLN---IRDFFRFLNEKPDCNRSL 72 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 R + + SF +Y K+ + + ++ K LP+ E++ TL L Sbjct: 73 ARKSAALNSFFRYCKRSGFIQNNPMEKIKRPKYEVPLPKCFTEEEVRTL-----LSIPDT 127 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 RN AIL LY GLRISE + Q+I + +R+ GKG+K RIVPL + Sbjct: 128 DSPFGIRNKAILETLYSSGLRISELAGIRLQDIDLKRGLVRVTGKGNKQRIVPLGSYAIE 187 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG----VFQRYIRQLRRYLGLPLSTTAHT 264 AI Y + P + N LF GK + + +RY + + G + H+ Sbjct: 188 AINNYLKVRPQFMRENSPDLLFLTKSGKAFDTKQLDIILKRYFELVAKAKGY----SPHS 243 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LRHSFATHLLS G DLR+IQ +LGH LSTT+ YT+++ ++ + E Y + HP Sbjct: 244 LRHSFATHLLSRGADLRAIQELLGHSLLSTTETYTHISLED----IKEAYKKGHP 294 >gi|294102502|ref|YP_003554360.1| integrase family protein [Aminobacterium colombiense DSM 12261] gi|293617482|gb|ADE57636.1| integrase family protein [Aminobacterium colombiense DSM 12261] Length = 297 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 91/312 (29%), Positives = 158/312 (50%), Gaps = 21/312 (6%) Query: 6 LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65 + E +SF L +L+ + + +S T+++Y D QF+ +L E+ +T+ + + Sbjct: 3 MVEKLSFAL----DYYLEQMRFAKSMSMYTIENYAVDLNQFVNYL---LEQNVTL--LSE 53 Query: 66 LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 + IR ++ + S+ R LS IK++ +L +K+ + N++ + L Sbjct: 54 VDTRIIREYLRVLASFGYARSSVARKLSAIKNWFAFLVDKKLVGKDPAKNVKGPRLPGRL 113 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 PRAL+ +Q L++ ++ R+ A+L LLYGCGLRI E + L ++I + Sbjct: 114 PRALSVEQVSRLIEVGCAKSADPL-----RDKAVLELLYGCGLRIGELVVLRWEDIDFAE 168 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245 +R++GKG+K R++P+ KA+ + D C + + LF G G L R Sbjct: 169 RWVRVRGKGNKERMIPVGKMAIKALYNWRDSC------QMGIFLFTGEEGSHLTVRTVGR 222 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + + + GL T H LRHSFATH+L G +R +Q +LGH L TTQ Y V +++ Sbjct: 223 IVDRAAKRAGLS-GVTPHMLRHSFATHMLEGGASIRVVQELLGHESLITTQRYLTVTAEH 281 Query: 306 GGDWMMEIYDQT 317 +E + +T Sbjct: 282 LKQSYIEAFPRT 293 >gi|257482612|ref|ZP_05636653.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 290 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 96/303 (31%), Positives = 150/303 (49%), Gaps = 21/303 (6%) Query: 24 NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83 +L ER +S TL++Y D + L + +K + + L +R+F +++ Q Sbjct: 2 HLRSERQVSPHTLEAYRRDLGKVLAYC-----QKAQLSSWNDLDIQHLRSFTARQHQQGQ 56 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 RSL R LS ++ F KYL + I + K LP+ L+ + L+D + Sbjct: 57 SSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGDRRLPKTLDTDRTAQLLDGGV- 115 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 E ++ R+ AIL LLY GLR+SE L + +++ GKG K R++P+ Sbjct: 116 ----EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVG 171 Query: 204 PSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPLSTT 261 R+A LE + P N Q +F +GK L P Q ++ R LG L Sbjct: 172 SKARQA-LEIW--LPLRALTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGERELGQNLHP- 227 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321 H LRHSFA+HLL + DLR++Q +LGH + TTQIYT+++ ++ + +YD HP Sbjct: 228 -HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATVYDSAHPRA 282 Query: 322 TQK 324 +K Sbjct: 283 KRK 285 >gi|330964222|gb|EGH64482.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. actinidiae str. M302091] Length = 290 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 93/303 (30%), Positives = 149/303 (49%), Gaps = 21/303 (6%) Query: 24 NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83 +L ER +S TL++Y D + L + +K + + L +R+F +++ Q Sbjct: 2 HLRSERQVSPHTLEAYRRDLSKVLAYC-----QKAQLSSWNDLDIQHLRSFTARQHQQGQ 56 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 RSL R LS ++ F KYL + + + K LP+ L+ + L+D + Sbjct: 57 SSRSLARMLSAVRGFYKYLNREGLCQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGV- 115 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 E ++ R+ AI+ LLY GLR+SE L + +++ GKG K R++P+ Sbjct: 116 ----EDDFLAHRDQAIMELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVG 171 Query: 204 PSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPLSTT 261 R+A+ + P N Q +F +GK L P Q I+ R LG L Sbjct: 172 SKARQALETW---LPLRALTNPQDDAVFVSQQGKRLGPRAVQLRIKTAGERELGQNLHP- 227 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321 H LRHSFA+HLL + DLR++Q +LGH + TTQIYT+++ ++ + +YD HP Sbjct: 228 -HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATVYDSAHPRA 282 Query: 322 TQK 324 +K Sbjct: 283 KRK 285 >gi|291457670|ref|ZP_06597060.1| tyrosine recombinase XerD [Bifidobacterium breve DSM 20213] gi|291380723|gb|EFE88241.1| tyrosine recombinase XerD [Bifidobacterium breve DSM 20213] Length = 309 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 86/308 (27%), Positives = 154/308 (50%), Gaps = 17/308 (5%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 R+ +L ++ IERGL+K T+ +YE D +++ +L + I ++ ++ +I+ Sbjct: 10 REQFLVHIGIERGLAKATVSAYESDLNKYVAWLQTHG-----ITKPDDIAKQDVEDYIAA 64 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 RS R L+ I F ++ + + +++ K ++ LP L+ + L Sbjct: 65 LDADGESARSKARRLASIHEFHRFALAQHAVSADVAASVKAPKGASVLPDVLSVDEVSRL 124 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 +D + S T + R+ A+L +Y G R+SEA+ +I ++ +R+ GKG K Sbjct: 125 LDAAAVGGS--TDPVVLRDKALLEFMYATGCRVSEAVGTNLDDIDLEEKVVRLMGKGSKQ 182 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLN--LNIQLP----LFRGIRGKPLNPGVFQRYIRQLR 251 R+VPL R +++ Y + +L ++P LF RGK ++ ++ Sbjct: 183 RLVPLGSYARNSVVAYLNAGRGELERRSTAKVPERRALFLNKRGKRISRQSVWEIVKTAG 242 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 + HTLRHSFATHL+ G D+R++Q +LGH ++TTQIYT+V+ + ++ Sbjct: 243 GRADITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPEA----LI 298 Query: 312 EIYDQTHP 319 E Y HP Sbjct: 299 ETYLTAHP 306 >gi|208779461|ref|ZP_03246806.1| tyrosine recombinase XerD [Francisella novicida FTG] gi|208744422|gb|EDZ90721.1| tyrosine recombinase XerD [Francisella novicida FTG] Length = 292 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 95/300 (31%), Positives = 147/300 (49%), Gaps = 18/300 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L NL +E GLS+ T+ SY D L FL Y + I L + ++ AFIS R Sbjct: 8 FLDNLWLEHGLSQNTISSYRTD----LKFLQNYFAKTDLIS----LDFEQLYAFISYRSK 59 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 RS R +S ++ F +L T + + K + LP+ + E Sbjct: 60 NGYSSRSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDV-----E 114 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LL T+ + R+ A+L L+Y GLR+SE + L +I + +++ GKG K RIV Sbjct: 115 RLLQAPDMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIV 174 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ + + +Y+ L+ N + +F K + F I+ G+ Sbjct: 175 PIGEYALEYLQKYFAEARMSLSKNFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTD 234 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLRS+Q +LGH +STT IYT+++ + EIY + HP Sbjct: 235 ISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR----LQEIYQKHHP 290 >gi|30249429|ref|NP_841499.1| phage integrase domain/SAM domain-containing protein [Nitrosomonas europaea ATCC 19718] gi|30138792|emb|CAD85369.1| Phage integrase:Phage integrase N-terminal SAM-like domain [Nitrosomonas europaea ATCC 19718] Length = 318 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 95/296 (32%), Positives = 149/296 (50%), Gaps = 13/296 (4%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E GLS+ TL SY D Q + +L + T ++ ++ ++ AF+S R Q + Sbjct: 31 LWLEDGLSRNTLASYRADLMQLVEWLG---RQPRTNGSLSDVTQADLLAFLSDRIGQGVK 87 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 + R+L+ IK F +YL ++ N+ + K S LP +L E + LL Sbjct: 88 ASTTCRALTCIKRFYRYLLRQGKILADPATNIDSPKISRHLPVSLTETEV-----EALLA 142 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + + R+ A+L +LY GLR+SE + L+ I D +RI GKG K R++PL Sbjct: 143 APDTRQPLGLRDRAMLEILYAAGLRVSELVGLSISQIRQDMGVVRILGKGSKERLIPLGE 202 Query: 205 SVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 + Y + P L F RG + F I++ R G+ + H Sbjct: 203 EALHWLSLYLQEARPVLLAGKHSNMSFVTTRGDAMTRQAFWYLIKRHARQAGIVKLLSPH 262 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 TLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V + + +++ + HP Sbjct: 263 TLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARER----LKQLHARHHP 314 >gi|296330829|ref|ZP_06873304.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674347|ref|YP_003866019.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus subtilis subsp. spizizenii str. W23] gi|296151834|gb|EFG92708.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412591|gb|ADM37710.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus subtilis subsp. spizizenii str. W23] Length = 304 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 90/308 (29%), Positives = 154/308 (50%), Gaps = 17/308 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +++ L+IE+ S+ T+ +Y +F FL I + Y + R F+++ Sbjct: 11 FVEYLQIEKNYSQYTIVNYVDSIEEFETFLRVQG-----INGFEKAVYQDTRIFLTEAYE 65 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + R++ + +S ++SF K+L + K+ E+ + K+ +P+ L +K+ L + Sbjct: 66 KGLSRRTISKKISALRSFYKFLMREKLVEENPFQLVHLPKQEKRIPKFLYQKELEELFE- 124 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 S ++ R+ A+L LLY G+R+SE S+T ++ T+ + GKG K R + Sbjct: 125 ----VSDISQPTGMRDQALLELLYATGMRVSECCSITVNDVDLFMDTVLVHGKGKKQRYI 180 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 P R+A+ Y + L + + P LF RG PL + + L + Sbjct: 181 PFGSYAREALKVYMNSGRQCLLMKAKEPHDLLFVNQRGGPLTARGIRHILSGLVQKASGT 240 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 L H LRH+FATHLL+ G DLRS+Q +LGH LS+TQIYT+V+ + + Y Sbjct: 241 LHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSK----EMLRNTYMSH 296 Query: 318 HPSITQKD 325 HP +K+ Sbjct: 297 HPRAFKKN 304 >gi|302346034|ref|YP_003814387.1| phage integrase, N-terminal SAM domain protein [Prevotella melaninogenica ATCC 25845] gi|302149123|gb|ADK95385.1| phage integrase, N-terminal SAM domain protein [Prevotella melaninogenica ATCC 25845] Length = 314 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 88/280 (31%), Positives = 145/280 (51%), Gaps = 12/280 (4%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L++E+G S TL +Y D + +LA E++ + ++ AFIS IG Sbjct: 18 LKLEKGYSVNTLDAYMRDVDKLFRYLAV---EQVDVLDVKLEDLEHFAAFISD---LGIG 71 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 RSL R LSG++ F ++L + + K+ + LP L+ + L + L Sbjct: 72 PRSLARILSGVRQFYRFLVIDGYLEVDPTELLESPKQPDHLPEVLSTAEVDLLEQAIDL- 130 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 +KW RN AI+ +L+ CGLR+SE +L N+ ++ +R+ GKG K R+VP+ P Sbjct: 131 ----SKWEGHRNRAIIEVLFSCGLRVSELTNLKLSNLYIEEQYIRVMGKGSKERLVPISP 186 Query: 205 SVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 + ++ D + + +F RG+ L + I++ G+ + + H Sbjct: 187 RALDELSYWFADRNVMKIKPGEEDYVFLNRRGQHLTRTMILIMIKRYAVEAGIKKTISPH 246 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 TLRHSFAT LL G DLR+IQ++LGH + TT+IYT++++ Sbjct: 247 TLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTHIDT 286 >gi|325289988|ref|YP_004266169.1| tyrosine recombinase XerD subunit [Syntrophobotulus glycolicus DSM 8271] gi|324965389|gb|ADY56168.1| tyrosine recombinase XerD subunit [Syntrophobotulus glycolicus DSM 8271] Length = 315 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 105/321 (32%), Positives = 166/321 (51%), Gaps = 27/321 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +++ L+IERGLS T QSY D ++ LI+L EE + Q ++ +F+ Sbjct: 8 DYINYLKIERGLSGNTCQSYRRDLKKLLIYL----EE--NQNNLFQCQPVDLFSFLYSVN 61 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q I RS+ R + +K F YL T+ + K LP L+E +L++ Sbjct: 62 EQGISARSIARYTAALKGFFSYLSDEGKRTDDPTELIVVPKLEQPLPHVLSESAVNSLIN 121 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + S ++ R++AIL +LYG GLR+SE ++L+ I + +R +GKG+K RI Sbjct: 122 HRDDKESQAGMLLEIRDTAILEVLYGSGLRVSELITLSLNQISLEVGYVRCRGKGNKERI 181 Query: 200 VPL----LPSVRKAILEYYDLC------PFDLNLNIQLPLFRGIRGKPLN-PGVFQRYI- 247 VPL L +++K +LE + P N LF RG L G++ Sbjct: 182 VPLSEPCLLALQKYLLEARNHLLRKNRKPTTAESN---SLFLNARGGRLTRQGIWTILKN 238 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 R ++ G + H +RH FATHLL +G DLRS+Q +LGH +STTQIYT++ +KN Sbjct: 239 RAVKNKAGAKI--YPHLMRHCFATHLLDHGADLRSVQEMLGHADISTTQIYTHL-TKN-- 293 Query: 308 DWMMEIYDQTHPSITQKDKKN 328 + +++++ HP + +KN Sbjct: 294 -RLRDVFEKAHPRAKRGGQKN 313 >gi|182415361|ref|YP_001820427.1| integrase family protein [Opitutus terrae PB90-1] gi|177842575|gb|ACB76827.1| integrase family protein [Opitutus terrae PB90-1] Length = 324 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 101/319 (31%), Positives = 156/319 (48%), Gaps = 21/319 (6%) Query: 6 LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65 LP V E + +N+L + ER S T+++Y F +L + + Sbjct: 20 LPAEVQAEWWQPFENYLAH---ERRYSAYTVRNYRQAFEDFYRWLVL---AGVWERGFDA 73 Query: 66 LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 L E+R F+ + + ++ G R+L +SG++SF K+ +R + L + K L Sbjct: 74 LQMRELRDFVIEAQ-RRFGRRTLHNHVSGLRSFFKFWLRRGKVQRNPFLGVPLPKLEKRL 132 Query: 126 PRALNEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 P+ L E+Q + L+ LL + + R+ +L LLYG GLR+SE L I Sbjct: 133 PKFLTEEQMVRLLAGPQQLLASESIDAFTAHRDRLVLELLYGAGLRVSELTGLNYGAIDL 192 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 + RI GKG K R+ P+ + ++ D F P+ RG ++P Sbjct: 193 EAGVARIVGKGRKERLCPIGRVAVAVLRKFRD--EFAPATAPDAPVIVTQRGTRMSPREV 250 Query: 244 QRYIRQLRRYLGL---PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 Q L+RYL L P+ T H LRHS+ATHLL+ G DLR +Q +LGH +L+TTQ+YT+ Sbjct: 251 QL---MLKRYLALAELPMDLTPHKLRHSYATHLLNAGADLRLVQELLGHAQLATTQVYTH 307 Query: 301 VNSKNGGDWMMEIYDQTHP 319 V+ + EIY + HP Sbjct: 308 VSVAR----LKEIYAKAHP 322 >gi|289672837|ref|ZP_06493727.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. syringae FF5] gi|330900733|gb|EGH32152.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. japonica str. M301072PT] gi|330941149|gb|EGH44028.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. pisi str. 1704B] gi|330976605|gb|EGH76649.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 299 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 93/305 (30%), Positives = 149/305 (48%), Gaps = 19/305 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 + +L ER +S TL++Y D + L + +K + + L +R+F +++ Sbjct: 8 YCMHLRSERQVSPHTLEAYRRDLGKVLAYC-----QKAQLSSWSDLDIQHLRSFTARQHQ 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q RSL R LS ++ F KYL + I + K LP+ L+ + L+D Sbjct: 63 QGQSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRTAQLLDG 122 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + E ++ R+ AIL LLY GLR+SE L + +++ GKG K R++ Sbjct: 123 GV-----EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVL 177 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPLS 259 P+ R+A+ + L L +F +GK L P Q ++ R LG L Sbjct: 178 PVGSKARQALEVWLPLRA--LTHPQDDAVFVSQQGKRLGPRAIQVRLKAAGERELGQNLH 235 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHSFA+HLL + DLR++Q +LGH + TTQIYT+++ ++ + +YD HP Sbjct: 236 P--HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATVYDSAHP 289 Query: 320 SITQK 324 +K Sbjct: 290 RAKRK 294 >gi|227535113|ref|ZP_03965162.1| site-specific recombinase XerD [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187254|gb|EEI67321.1| site-specific recombinase XerD [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 298 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 93/298 (31%), Positives = 148/298 (49%), Gaps = 14/298 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 + + LE+ER S T+ +Y D R+F FL + R + +++ +++ Sbjct: 7 FQEYLEVERQYSPETVTAYLSDLREFQAFL----KANGGFTDFRHVDDLDVQTYLTDLNK 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQALTLVD 139 Q + S+ R +S ++SF +YL + + + N + LKK + LP+ E + L Sbjct: 63 QDLARTSIARKISSLRSFYRYLTRIDVV-KRNPFELVELKKQHHHLPQFFYEAEIQELFK 121 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 V T +D RN A+L +LYG G+R+SE LT + + + L I GKG+K R Sbjct: 122 TVAGKTP-----LDQRNRALLEVLYGTGIRVSECAKLTLNQVDFNTALLLIHGKGNKDRY 176 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 VP ++A+ Y L Q +F G+P+ + + QL + L Sbjct: 177 VPFGQYAQQALRTYLKDGRQVLMAKSQAQHRYVFVNQYGRPITSRGIEYILDQLIKQTTL 236 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 + H LRHSFATH+L +G DLR++Q +LGH LSTTQIYT+V + + M+ Y Sbjct: 237 TANIHPHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEYMKYY 294 >gi|302525185|ref|ZP_07277527.1| tyrosine recombinase XerC [Streptomyces sp. AA4] gi|302434080|gb|EFL05896.1| tyrosine recombinase XerC [Streptomyces sp. AA4] Length = 307 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 91/301 (30%), Positives = 147/301 (48%), Gaps = 7/301 (2%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 + ++L +ERGLS T+++Y D L F E++ + L T++RA+++ +R Sbjct: 11 GYERHLSLERGLSPHTVRAYVGDVVSLLAFQTVGAEDR-PARRFEDLDVTQLRAWLAGQR 69 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + G +L R + ++F + + + + + +LP L +QA L+D Sbjct: 70 SDGAGRTTLARRAAAARTFTAWAHRTGLLKSDPGGRLAAPRTHRTLPGVLRAEQADALMD 129 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + E + R+ A++ LLY G+R+SE L ++ + L + GKGDK R Sbjct: 130 ASAKGAA-ERDPVALRDRALVELLYATGIRVSELCGLDVASVDFSRRVLSVVGKGDKERT 188 Query: 200 VPL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VP +P+ D P LF G+RGK L+P +R + + + Sbjct: 189 VPFGVPAAEALTAWLEDGRPALAGETPPKALFLGVRGKRLDPRAARRVVHEAVAAVPGAA 248 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 H LRHS ATHLL G DLRS+Q +LGH L+TTQ+YT+V D + I+D+ H Sbjct: 249 DMGPHGLRHSAATHLLEGGADLRSVQELLGHATLATTQLYTHVTV----DRLKAIHDRAH 304 Query: 319 P 319 P Sbjct: 305 P 305 >gi|288940120|ref|YP_003442360.1| tyrosine recombinase XerD [Allochromatium vinosum DSM 180] gi|288895492|gb|ADC61328.1| tyrosine recombinase XerD [Allochromatium vinosum DSM 180] Length = 297 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 94/302 (31%), Positives = 153/302 (50%), Gaps = 15/302 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + L +ERGLS+ TL +Y+ D R F +L ++E+ +T+ ++ ++++ Sbjct: 8 EGFADALWMERGLSRNTLTAYQSDLRAFAHWL---SQERG--RTLIAAERADLLDYLARL 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q RS R LS ++ F ++L++R + + K LP++L+E Sbjct: 63 AKQGRNPRSSARLLSCLRQFYQHLRRRGLIEADPSARVEAPKLGRPLPKSLSEADV---- 118 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL+ R+ +L +LY GLR+SE ++LTP + Q +RI GKG K R Sbjct: 119 -EALLNAPDTEDARGHRDRTMLEVLYASGLRVSELVNLTPSQVSLTQGVVRILGKGGKER 177 Query: 199 IVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL + +Y FD L LF R + F + I++ G+ Sbjct: 178 LVPLGEDACNWLRDYVRGPRFDILGGRASDFLFPTRRSDCMTRQAFWQLIKRYAILAGVA 237 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + + +++ + Sbjct: 238 KPLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARER----LKQLHARH 293 Query: 318 HP 319 HP Sbjct: 294 HP 295 >gi|296394365|ref|YP_003659249.1| integrase family protein [Segniliparus rotundus DSM 44985] gi|296181512|gb|ADG98418.1| integrase family protein [Segniliparus rotundus DSM 44985] Length = 304 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 93/302 (30%), Positives = 149/302 (49%), Gaps = 14/302 (4%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI--QTIRQLSYTEIRAFISKRRT 80 ++L ERG S T+++Y D R + ++ T + + ++ ++R ++S+ Sbjct: 10 RHLRFERGRSPNTVRAYLGDLRAYFGPAVDGNDQDDTAAHEVLGAVTIADLRGWLSEMTA 69 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + +L R SG+K+F ++ + + + K +LP L + QA + Sbjct: 70 EGASRATLARRASGMKTFFEWAMRNGLAEHDPTARLSTPKLRRTLPHVLRQDQA----EQ 125 Query: 141 VLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 L H+ + A R+ IL LLYG G+R+ E L +I D+ + GKGDK R Sbjct: 126 ALGPAPHQREGPLALRDQLILELLYGTGMRVGELCGLDLDDIDQDRRLATVLGKGDKQRA 185 Query: 200 VPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ-LRRYLGLP 257 VP A+ + D P + L G RGK L+P +R +++ + GLP Sbjct: 186 VPFGAKAADALAAWLRDGRPALVGPRSGAALLLGARGKRLDPRTARRVVQERVAEEAGLP 245 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 S H LRHS ATHLL G DLR +Q ILGH L+TTQIYT+V+ + + ++++Q Sbjct: 246 -SLGPHGLRHSAATHLLEGGADLRVVQEILGHSSLATTQIYTHVSVER----LRKVHEQA 300 Query: 318 HP 319 HP Sbjct: 301 HP 302 >gi|108760213|ref|YP_631219.1| phage integrase family site specific recombinase [Myxococcus xanthus DK 1622] gi|34222772|sp|P59818|XERC_MYXXA RecName: Full=Tyrosine recombinase xerC gi|122981099|sp|Q1D804|XERC_MYXXD RecName: Full=Tyrosine recombinase xerC gi|27804888|gb|AAO22922.1| integrase/recombinase [Myxococcus xanthus] gi|108464093|gb|ABF89278.1| site-specific recombinase, phage integrase family [Myxococcus xanthus DK 1622] Length = 300 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 104/309 (33%), Positives = 153/309 (49%), Gaps = 27/309 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + +LE E+G S T+++Y D L+ Y E++ + + ++ IR ++ Sbjct: 9 EKFRAHLEDEKGSSPHTVRNYLID----LVDFERYLVERMKLSLLSG-THAAIRGYLGTL 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 T S R L+ IKSF KYL ++K+ S +++ K +LP+ L ++ ++ Sbjct: 64 STDH-APASRARRLASIKSFYKYLVRQKLLPASPAKLVKSPKLPKTLPKVLPVEEVFAIL 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + T + R+ AIL LLYG GLRISE L +I +R+ GKG K R Sbjct: 123 DMPDVKT-----VLGLRDRAILELLYGGGLRISELCGLDLLDIDRSGRIVRVMGKGSKER 177 Query: 199 IVPL-LPSVRKAILEYYDLCPFDLNLNI---QLP--LFRGIRGKPLNPGVFQRYIRQLRR 252 +VP+ S+R LE Y +L I Q P +F RG L P R++ Sbjct: 178 LVPVNAQSIRA--LEAYLARRGELLATIRKDQAPEAMFLNFRGGRLTPRSIARHLDTYVL 235 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW--M 310 L + H +RHSFATHLL G D+RSIQ +LGH LSTTQ YT V W + Sbjct: 236 KCALTRKVSPHAMRHSFATHLLGGGADIRSIQELLGHSSLSTTQRYTQVT------WEQL 289 Query: 311 MEIYDQTHP 319 ++YD HP Sbjct: 290 QQVYDSAHP 298 >gi|301382613|ref|ZP_07231031.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. tomato Max13] gi|302063357|ref|ZP_07254898.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. tomato K40] gi|302133632|ref|ZP_07259622.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. tomato NCPPB 1108] gi|331017919|gb|EGH97975.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 290 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 93/303 (30%), Positives = 149/303 (49%), Gaps = 21/303 (6%) Query: 24 NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83 +L ER +S TL++Y D + L + +K + + L +R+F +++ Q Sbjct: 2 HLRSERQVSPHTLEAYRRDLSKVLAYC-----QKARLSSWNDLDIQHLRSFTARQHQQGQ 56 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 RSL R LS ++ F KYL + + + K LP+ L+ + L+D + Sbjct: 57 SSRSLARMLSAVRGFYKYLNREGLCQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGV- 115 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 E ++ R+ AI+ LLY GLR+SE L + +++ GKG K R++P+ Sbjct: 116 ----EDDFLAHRDQAIMELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVG 171 Query: 204 PSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPLSTT 261 R+A+ + P N Q +F +GK L P Q I+ R LG L Sbjct: 172 SKARQALETW---LPLRALTNPQDDAVFVSQQGKRLGPRAVQLRIKTAGERELGQNLHP- 227 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321 H LRHSFA+HLL + DLR++Q +LGH + TTQIYT+++ ++ + +YD HP Sbjct: 228 -HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATVYDSAHPRA 282 Query: 322 TQK 324 +K Sbjct: 283 KRK 285 >gi|319792815|ref|YP_004154455.1| tyrosine recombinase xerd [Variovorax paradoxus EPS] gi|315595278|gb|ADU36344.1| tyrosine recombinase XerD [Variovorax paradoxus EPS] Length = 303 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 98/308 (31%), Positives = 164/308 (53%), Gaps = 22/308 (7%) Query: 17 ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 E ++ L +E GLSK TL +Y D F +L I + T ++ ++++A++ Sbjct: 11 EIDEFIDALWLEDGLSKNTLAAYRRDLALFSQWLG-KQRSGIALDTAQE---SDVQAYMG 66 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRA---LNEK 132 R + K S R L+ K + ++ L++R+IT + I L + +PRA L+EK Sbjct: 67 VRLSTKGKATSANRRLTVFKRYYRWALRERRITADPTI----RLAPARQMPRAIKTLSEK 122 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 Q VD++L ET + R+ A+L ++Y GLR+SE ++L ++ + LR+ G Sbjct: 123 Q----VDDLLAAPDVETP-LGLRDRAMLEVMYASGLRVSELVALKVIDMSLNDGVLRVLG 177 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 KG+K R+VP R+ I Y + P L+ LF RG + +F +++ Sbjct: 178 KGNKERLVPFGGEARRWIERYLEESRPVILDGQQTPDLFVTARGAGMTRVMFWIIVKKQA 237 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 G+ + + HTLRH+FATHLL++G DLR++Q +LGH +STT IYT+V + + Sbjct: 238 AAAGIHVPLSPHTLRHAFATHLLNHGVDLRAVQLLLGHADISTTTIYTHVARER----LK 293 Query: 312 EIYDQTHP 319 +++ HP Sbjct: 294 QLHAAHHP 301 >gi|284991421|ref|YP_003409975.1| tyrosine recombinase XerD [Geodermatophilus obscurus DSM 43160] gi|284064666|gb|ADB75604.1| tyrosine recombinase XerD [Geodermatophilus obscurus DSM 43160] Length = 315 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 88/310 (28%), Positives = 149/310 (48%), Gaps = 23/310 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +L +L +ERGL+ T+ SY D R++ FL + ++ + +++ +++ F++ R Sbjct: 15 GYLDHLTVERGLAANTISSYRRDLRRYTEFL-----DAAGVRGLGEVAESDVAGFLAALR 69 Query: 80 T-----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 + S R++ ++ ++ + + +R + LP+A+ + Sbjct: 70 QGDDDHPPLSATSAARAVVAVRGLHRFALLDGLVPDDVAHEVRPPSPARRLPKAIPVESV 129 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 + L++ + + R+ A+L LLYG G RISEA+ L ++ QS +R+ GKG Sbjct: 130 VALIEAA--GALEGPRGL--RDRALLELLYGTGARISEAVGLAVDDLDRGQSVVRLAGKG 185 Query: 195 DKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 K RIVP+ +A+ +Y L LF RG L+ +R Sbjct: 186 GKQRIVPVGSYALRAVEDYLVRARPALAAAGRGGVRGGALFLNARGGSLSRQSAWAILRT 245 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 GL + HTLRHSFATHLL G D+R +Q +LGH ++TTQ+YT V D Sbjct: 246 AAERAGLTAEVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLVTV----DR 301 Query: 310 MMEIYDQTHP 319 + E+Y +HP Sbjct: 302 LREVYASSHP 311 >gi|326803545|ref|YP_004321363.1| phage integrase, N-terminal SAM domain protein [Aerococcus urinae ACS-120-V-Col10a] gi|326651486|gb|AEA01669.1| phage integrase, N-terminal SAM domain protein [Aerococcus urinae ACS-120-V-Col10a] Length = 309 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 91/312 (29%), Positives = 156/312 (50%), Gaps = 11/312 (3%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 R+ + ++ E+ S TL++Y D F+ FL +++ I QLSY +IR ++S Sbjct: 7 RKRLKEYIKDEKHYSDQTLKAYLSDFDDFISFL----RDELLISDFEQLSYRDIRLYLSH 62 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 + + + +SL R LS +++ + + ++ ++ K LP E + Sbjct: 63 LQRKGLSRKSLARHLSSLRTAFNRFLDQGLVKDNPFTYVQAAKTGLRLPDFFYEAEL--- 119 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 + L + + +D RN A+L LY G R+SE +LT + S + GKG K Sbjct: 120 --DPLFEAAKGPRALDKRNIALLEFLYATGARVSECTNLTITQVDLKNSIALLHGKGSKD 177 Query: 198 RIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 R VP +KA+ EY D P L + +F RG+ L P + L + Sbjct: 178 RYVPFGSYCKKALEEYLDSGRPVLLKGHDHEYIFVNSRGEALTPSGVTYILNDLVKKSAS 237 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 L H LRHSFATHLL++G D+R++Q +LGH LS+TQIYT+++ ++ + ++ + + Sbjct: 238 NLDIHPHKLRHSFATHLLNHGADIRTVQELLGHSSLSSTQIYTHMSKESLRNNYLKYFPR 297 Query: 317 T-HPSITQKDKK 327 H + ++DK+ Sbjct: 298 AKHSDVHKEDKE 309 >gi|308233786|ref|ZP_07664523.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829] gi|328943765|ref|ZP_08241230.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829] gi|327491734|gb|EGF23508.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829] Length = 319 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 97/310 (31%), Positives = 159/310 (51%), Gaps = 29/310 (9%) Query: 11 SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70 +F+ +KE +L + IERG S TL SY+ D +L FL + + T R++ Sbjct: 3 TFDTIKE--EYLNYVLIERGYSVHTLHSYDHDLTLYLSFLQSHDIDDPAYIT-REI---- 55 Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 + A+I+ + + +++R++S IK F K++ +I N++ KKS LP L Sbjct: 56 VEAYIAHLFHEGMSSSTVQRAVSSIKGFHKFMVVEQICENHPTTNLKLPKKSFHLPDVLT 115 Query: 131 EKQALTLVDNV----LLHT---------SHETKWIDARNSAILYLLYGCGLRISEALSLT 177 + Q + L+D+ LL S + + R+ AIL +LYGCGLR+SE L Sbjct: 116 QDQIIHLLDDPFKPQLLPAPKLTARKALSLKPQACFYRDKAILEMLYGCGLRVSELCGLN 175 Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRG 232 +++ +R+ GKG K R+VP L + A+ Y + C L P +F Sbjct: 176 QGDVLVSDELVRVFGKGSKERLVPCLGT---ALESYQNYCTKWRALLACSPKTTDAVFLS 232 Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 +RG ++ + + Y+G+ HTLRHS+ATH+L G +LR +Q +LGH + Sbjct: 233 VRGTRISRQAVFSLVERYGSYVGIK-GLHPHTLRHSYATHMLEGGMNLRIVQELLGHASI 291 Query: 293 STTQIYTNVN 302 STTQ+YT+++ Sbjct: 292 STTQLYTHID 301 >gi|121611464|ref|YP_999271.1| phage integrase family protein [Verminephrobacter eiseniae EF01-2] gi|121556104|gb|ABM60253.1| phage integrase family protein [Verminephrobacter eiseniae EF01-2] Length = 378 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 95/318 (29%), Positives = 151/318 (47%), Gaps = 27/318 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +L++L +E+ L+ +L Y D + F A + + QL+ IR F+++ Sbjct: 24 QRYLEHLRVEKRLAARSLTLYRLDLEKLARFAAGLSLPLL------QLTDAHIRRFVAQM 77 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + R + LSG + F + ++ + + +L +R K LP+AL QA+ L Sbjct: 78 HSAGRSGRGIALILSGWRGFFIWAGRQGLIGRNPVLGIRAPKSPKPLPKALGVDQAMRLA 137 Query: 139 DNVLLHT--SHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNIMDDQS-------- 186 D + W+ R++A+ LLYG GLR E L P + Q Sbjct: 138 DFDGAAGAATEADIWLQIRDAAMAELLYGSGLRAGELAGLDAVPNADTERQGRGWVDLQA 197 Query: 187 -TLRIQGKGDKIRIVPLLPSVRKAILEYYDL--CPFDLNLNIQLPL--FRGIRGKPLNPG 241 + + GKG K R VP+ + A+ + L PF +L F G RG L Sbjct: 198 GEVHVLGKGSKRRSVPMGRAASAALRAWLALRAKPFGAAGAARLDAALFVGRRGARLTTL 257 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 R +RQ + GLP H LRHSFA+HLL + GDLR++Q +LGH +++TQ+YT + Sbjct: 258 SIWRRLRQRSQRAGLPSPVHPHMLRHSFASHLLQSSGDLRAVQELLGHASITSTQVYTRL 317 Query: 302 NSKNGGDWMMEIYDQTHP 319 + ++ + +YD THP Sbjct: 318 DFQH----LARVYDATHP 331 >gi|256847174|ref|ZP_05552620.1| tyrosine recombinase XerC [Lactobacillus coleohominis 101-4-CHN] gi|256715838|gb|EEU30813.1| tyrosine recombinase XerC [Lactobacillus coleohominis 101-4-CHN] Length = 312 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 94/303 (31%), Positives = 150/303 (49%), Gaps = 15/303 (4%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87 ER L+ T+Q YE D R F FL ++ RQ +I+A+++ + + Sbjct: 20 ERQLAATTVQGYENDLRMFRKFLTAKKHWLGWLKIKRQ----DIQAYLTHLNDLRRQWTT 75 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 + R L+ +++F +L + + +R S SLPR E + N L + Sbjct: 76 INRELASLRTFYNFLLTNGLVVANPFDEVRMKHHSRSLPRYFYEPEM-----NALFKAAD 130 Query: 148 -ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 + + +D RN AI+ LLY G+R+SE SL+ + I D + + GKGDK R VP Sbjct: 131 GDGRPLDFRNRAIIELLYATGMRVSECASLSLEQINWDVQMILVHGKGDKERYVPFGHYA 190 Query: 207 RKAILEYYDLCP---FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 + A+ Y C D +F GKP+ + + Q+ + L + H Sbjct: 191 KVALERYLHECREPLMDKYHEEHRRVFINHYGKPITSEGIEYVLNQVVKKSSLNIHIHPH 250 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323 LRHSFAT +L+NG D+RS+Q +LGH LSTTQIYT+V +N M+++ + +T+ Sbjct: 251 MLRHSFATAMLNNGADIRSVQELLGHSSLSTTQIYTHVTRENLQKTYMKLFPRA--KMTK 308 Query: 324 KDK 326 +D+ Sbjct: 309 EDQ 311 >gi|228922585|ref|ZP_04085885.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837014|gb|EEM82355.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 299 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 88/308 (28%), Positives = 161/308 (52%), Gaps = 25/308 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q ++ L+IER SK T+ SY+ D F+ F+ E+ I + ++Y ++R +++ Sbjct: 8 QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDVTYADVRLYLTTL 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137 +K+ +S+ R +S ++S ++L R+ + N + +L KK S+P+ L ++ Sbjct: 63 HDEKLARKSVARKVSSLRSLYRFLI-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 118 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 L S + RN A+L L+Y G+R+SE ++L +I T+ + GKG K Sbjct: 119 --EELFEVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 176 Query: 198 RIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 R +P + +++ Y + + D + ++ +F +G PL + + ++ Sbjct: 177 RYIPFGSYAQDSLITYIENGRKQLVNKTDEDSHM---VFLNAKGTPLTSRGVRYVLNEII 233 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 + L + + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ + + Sbjct: 234 KKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----ERLR 289 Query: 312 EIYDQTHP 319 +Y + HP Sbjct: 290 SVYMKHHP 297 >gi|88706916|ref|ZP_01104615.1| Tyrosine recombinase xerD [Congregibacter litoralis KT71] gi|88698838|gb|EAQ95958.1| Tyrosine recombinase xerD [Congregibacter litoralis KT71] Length = 302 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 96/303 (31%), Positives = 152/303 (50%), Gaps = 18/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L + +E+GLS+ TL +Y D + F + A + T Q+ ++I A+++ Sbjct: 14 ESYLDAVWMEKGLSENTLAAYRRDLQAFARW-ALSRQRTAT-----QIERSDIEAYLASL 67 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 +K RS R+LS ++ F +YL + L + + + LP+ L+E V Sbjct: 68 LEKKSSPRSAARALSCLRGFYRYLLRSGQLDTDPTLGLDSPRLGRPLPKTLSE------V 121 Query: 139 D-NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 D + LL I R+ +L LLY CGLR+SE LT + +Q LRI GKG K Sbjct: 122 DVDALLKAPKLDDPIGFRDRCMLELLYACGLRVSELTGLTLSQLSLNQGVLRIVGKGGKE 181 Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 R+VP+ + + D+ P L LF R + + F I+Q G+ Sbjct: 182 RLVPIGEEALHWLQRFLRDVRPELLGETSSDVLFPSRRAREMTRQTFWHRIKQHAMTAGI 241 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHL+++G DLR +Q +LGH LSTTQIYT+V + + ++ + Sbjct: 242 RKPISPHVLRHAFATHLVNHGADLRVVQLLLGHSDLSTTQIYTHVARQR----LQSLHAK 297 Query: 317 THP 319 HP Sbjct: 298 HHP 300 >gi|289426394|ref|ZP_06428137.1| phage integrase, N-terminal SAM domain protein [Propionibacterium acnes SK187] gi|289153122|gb|EFD01840.1| phage integrase, N-terminal SAM domain protein [Propionibacterium acnes SK187] gi|313773500|gb|EFS39466.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL074PA1] gi|313807979|gb|EFS46460.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL087PA2] gi|313811552|gb|EFS49266.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL083PA1] gi|313819548|gb|EFS57262.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL046PA2] gi|313822129|gb|EFS59843.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL036PA1] gi|313823637|gb|EFS61351.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL036PA2] gi|313825961|gb|EFS63675.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL063PA1] gi|313831292|gb|EFS69006.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL007PA1] gi|313834903|gb|EFS72617.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL056PA1] gi|314924714|gb|EFS88545.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL036PA3] gi|314962115|gb|EFT06216.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL002PA2] gi|314974168|gb|EFT18264.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL053PA1] gi|314976542|gb|EFT20637.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL045PA1] gi|314979003|gb|EFT23097.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL072PA2] gi|314984361|gb|EFT28453.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL005PA1] gi|314986551|gb|EFT30643.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL005PA2] gi|314990910|gb|EFT35001.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL005PA3] gi|315081228|gb|EFT53204.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL078PA1] gi|315083594|gb|EFT55570.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL027PA2] gi|315087111|gb|EFT59087.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL002PA3] gi|315095307|gb|EFT67283.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL038PA1] gi|327328430|gb|EGE70192.1| putative tyrosine recombinase XerC [Propionibacterium acnes HL096PA2] gi|327329704|gb|EGE71460.1| putative tyrosine recombinase XerC [Propionibacterium acnes HL096PA3] gi|327444217|gb|EGE90871.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL043PA2] gi|327444904|gb|EGE91558.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL043PA1] gi|327446389|gb|EGE93043.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL013PA2] gi|328752379|gb|EGF65995.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL020PA1] gi|328760018|gb|EGF73600.1| putative tyrosine recombinase XerC [Propionibacterium acnes HL099PA1] gi|332675950|gb|AEE72766.1| tyrosine recombinase XerC [Propionibacterium acnes 266] Length = 315 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 79/285 (27%), Positives = 138/285 (48%), Gaps = 9/285 (3%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T++ Y D + + ++ T+ ++ +++RA+++ R +++R S Sbjct: 38 TIRGYRADLIDLMGHAHSHGDD-----TLGRIGTSQVRAWLADTRVAGASAATMQRRWSA 92 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + F ++ + + + + K LP L QA ++D + H+ A Sbjct: 93 ARVFFRWAANEGLISADPTTALNSAKVPKRLPATLGVDQARHILDEAVAQARHDESPHGA 152 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R++AIL +LYG GLR+ E L ++ + T+++ GKGDK R VP+ +AI + Sbjct: 153 RDAAILEVLYGGGLRVGELCGLDLGDVDRSRRTVKVTGKGDKERTVPMGAPALRAIDTWL 212 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 + + LF G RG+ ++ V +R + R H LRH+ ATHLL Sbjct: 213 PRREEWVGPHSGQALFLGARGRRIDQRVVRRVVHTHLRAEPDSPDLGPHGLRHAMATHLL 272 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 G DLR++Q ILGH L+TTQIYT+V+++ + + Q HP Sbjct: 273 EGGADLRTVQDILGHESLATTQIYTHVSTER----LRTAFRQAHP 313 >gi|288803482|ref|ZP_06408914.1| integrase/recombinase XerD [Prevotella melaninogenica D18] gi|288334092|gb|EFC72535.1| integrase/recombinase XerD [Prevotella melaninogenica D18] Length = 314 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 88/280 (31%), Positives = 145/280 (51%), Gaps = 12/280 (4%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L++E+G S TL +Y D + +LA E++ + ++ AFIS IG Sbjct: 18 LKLEKGYSANTLDAYMRDVDKLFRYLAV---EQVDVLDVKLEDLEYFAAFISD---LGIG 71 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 RSL R LSG++ F ++L + + K+ + LP L+ + L + L Sbjct: 72 PRSLARILSGVRQFYRFLVIDGYLEVDPTELLESPKQPDHLPEVLSTAEVDLLEQAIDL- 130 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 +KW RN AI+ +L+ CGLR+SE +L N+ ++ +R+ GKG K R+VP+ P Sbjct: 131 ----SKWEGHRNRAIIEVLFSCGLRVSELTNLKLSNLYIEEQYIRVMGKGSKERLVPISP 186 Query: 205 SVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 + ++ D + + +F RG+ L + I++ G+ + + H Sbjct: 187 RALDELNYWFADRNVMKIKPGEEDYVFLNRRGQHLTRTMILIMIKRYAVEAGIKKTISPH 246 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 TLRHSFAT LL G DLR+IQ++LGH + TT+IYT++++ Sbjct: 247 TLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTHIDT 286 >gi|229543943|ref|ZP_04433002.1| tyrosine recombinase XerD [Bacillus coagulans 36D1] gi|229325082|gb|EEN90758.1| tyrosine recombinase XerD [Bacillus coagulans 36D1] Length = 297 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 88/304 (28%), Positives = 161/304 (52%), Gaps = 17/304 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISK 77 ++++ + +E+GL++ T+ SY+ D +L +L +K+ + T +++ I F++ Sbjct: 6 KDFMHFMIVEKGLAENTIASYKRDLHSYLRYL-----QKVELVTSWNEVTRFHILHFLNF 60 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 + Q +++ R ++ I+SF ++L + K + +++ K +LP+ L+ ++ Sbjct: 61 LKQQGKSSKTIARHVASIRSFHQFLLREKFAGQDPTVHIETPKPERTLPKVLSVQE---- 116 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 V+ +L +T + R+ A+L LLY G+R+SE L ++ ++ GKGDK Sbjct: 117 VEALLAAPKGDTP-LHMRDGAMLELLYATGMRVSEMTGLNLDDLHLSMGFIKCIGKGDKE 175 Query: 198 RIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RI+P+ + A+ Y L N LF G L+ F + ++ L + Sbjct: 176 RIIPIGRTASAALERYLKEGRPKLVSKTNRTDALFLNHHGARLSRQGFWKILKALAKKAN 235 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + T HTLRHSFATHL+ NG DLR++Q +LGH +STTQIYT+V+ + ++Y Sbjct: 236 IEKDITPHTLRHSFATHLIENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKDVYA 291 Query: 316 QTHP 319 + HP Sbjct: 292 KFHP 295 >gi|319425289|gb|ADV53363.1| tyrosine recombinase XerD [Shewanella putrefaciens 200] Length = 300 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 97/300 (32%), Positives = 152/300 (50%), Gaps = 16/300 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +L +GLS TL +Y D R F ++ T+ + + ++R++++ R Sbjct: 14 FLDDLWSSKGLSDNTLSAYRTDLRHF------DRHQQRHGTTLLEATAADVRSYLALRLE 67 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q S R LS ++ F YL K + + + K + LP +L+E Q VD Sbjct: 68 QHFARTSSARLLSSLRRFYTYLLLTKQIAVDPMALIESPKLTRHLPHSLSESQ----VDR 123 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 +L + + ++ R+ A+L LLY GLR+SE + LT + + Q +RI GKG K R+V Sbjct: 124 LLAEPNVDDP-VECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLV 182 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 PL + Y +L + Q + F RG+ + F I+ G+ + Sbjct: 183 PLGELAVTEVEAYLKFARQELLGHKQSDVVFPSNRGQMMTRQTFWHRIKLYALRAGIETA 242 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + E++ Q HP Sbjct: 243 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARAR----LQELHQQHHP 298 >gi|303245447|ref|ZP_07331731.1| tyrosine recombinase XerD [Desulfovibrio fructosovorans JJ] gi|302493296|gb|EFL53158.1| tyrosine recombinase XerD [Desulfovibrio fructosovorans JJ] Length = 307 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 90/316 (28%), Positives = 155/316 (49%), Gaps = 19/316 (6%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 N P I S + +N+L++L + +GL++ ++++Y D FLIFL + +++T+ Sbjct: 5 NTSPAIPSHPWV---ENYLEHLIVAKGLAEHSIKAYSTDITDFLIFL---NDHAGSLETV 58 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 + ++ R++ + RSL R LS ++ F Y ES + N K Sbjct: 59 TD---DTLFLYLMHLRSRGLASRSLARHLSALRGFFAYAAGEGWLPESPAALIENPKLPR 115 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 LP L+ L+D T + R+ +L LLY GLR+SE + L + Sbjct: 116 LLPDVLSRDDVARLLDAPDTATP-----LGYRDRTMLELLYAAGLRVSELIGLALTDFDA 170 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 LR+ GKG K R++P+ ++ + Y + Q +F G+ L+ Sbjct: 171 QAGLLRVFGKGSKERLIPIHALAQEFLSTYIQTIRGAFHPKEQF-VFLNRSGRGLSRQAV 229 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + I++ G+ L + H+LRHSFATHLL G DLR++Q++LGH +S T+IYT+V + Sbjct: 230 WKGIKRHALVAGISLHISPHSLRHSFATHLLDGGADLRTVQTLLGHADISATEIYTHVQA 289 Query: 304 KNGGDWMMEIYDQTHP 319 + ++ ++ HP Sbjct: 290 ER----LLAVHRAHHP 301 >gi|303241573|ref|ZP_07328073.1| tyrosine recombinase XerD [Acetivibrio cellulolyticus CD2] gi|302590891|gb|EFL60639.1| tyrosine recombinase XerD [Acetivibrio cellulolyticus CD2] Length = 294 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 98/306 (32%), Positives = 155/306 (50%), Gaps = 28/306 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L LE ++ LS TLQSY D Q++ +L +I +Q I + T + ++ + Sbjct: 8 FLTFLEKDKRLSLNTLQSYRRDIEQYITYL-----NEIKLQNISNTNKTTVITYLLHLQK 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + ++ R+L+ I+SF +YL K + + + + K LP+ L+ K+ L+D Sbjct: 63 KGRATSTISRNLASIRSFYQYLTKNGVISGDPTEELESPKVEKKLPQILSTKEVELLLD- 121 Query: 141 VLLHTSHETKWIDA---RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 + K D R+ A+L LLY G+R+SE + L +I D ++ KG + Sbjct: 122 -------QPKCDDLKGFRDKAMLELLYATGIRVSELICLNVLDINLDMGFIKC-NKGTRE 173 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQL----PLFRGIRGKPLNPGVFQRYIRQLRRY 253 R++P+ +A+ EY NL IQ LF + GK L F + I+Q + Sbjct: 174 RMIPIGSLSIQALNEY---LAKSRNLLIQRSDEKALFVNVNGKRLTRQGFWKIIKQYKNL 230 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 + T HTLRHSFA HLL NG DLRSIQ +LGH +S+TQ+Y + + + E+ Sbjct: 231 AKINKDITPHTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQVYAQI----AKNRIKEV 286 Query: 314 YDQTHP 319 Y +THP Sbjct: 287 YKKTHP 292 >gi|289428621|ref|ZP_06430304.1| phage integrase, N-terminal SAM domain protein [Propionibacterium acnes J165] gi|295131071|ref|YP_003581734.1| site-specific recombinase, phage integrase family [Propionibacterium acnes SK137] gi|289158019|gb|EFD06239.1| phage integrase, N-terminal SAM domain protein [Propionibacterium acnes J165] gi|291376498|gb|ADE00353.1| site-specific recombinase, phage integrase family [Propionibacterium acnes SK137] Length = 300 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 79/285 (27%), Positives = 138/285 (48%), Gaps = 9/285 (3%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T++ Y D + + ++ T+ ++ +++RA+++ R +++R S Sbjct: 23 TIRGYRADLIDLMGHAHSHGDD-----TLGRIGTSQVRAWLADTRVAGASAATMQRRWSA 77 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + F ++ + + + + K LP L QA ++D + H+ A Sbjct: 78 ARVFFRWAANEGLISADPTTALNSAKVPKRLPATLGVDQARHILDEAVAQARHDESPHGA 137 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R++AIL +LYG GLR+ E L ++ + T+++ GKGDK R VP+ +AI + Sbjct: 138 RDAAILEVLYGGGLRVGELCGLDLGDVDRSRRTVKVTGKGDKERTVPMGAPALRAIDTWL 197 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 + + LF G RG+ ++ V +R + R H LRH+ ATHLL Sbjct: 198 PRREEWVGPHSGQALFLGARGRRIDQRVVRRVVHTHLRAEPDSPDLGPHGLRHAMATHLL 257 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 G DLR++Q ILGH L+TTQIYT+V+++ + + Q HP Sbjct: 258 EGGADLRTVQDILGHESLATTQIYTHVSTER----LRTAFRQAHP 298 >gi|83644610|ref|YP_433045.1| tyrosine recombinase XerD [Hahella chejuensis KCTC 2396] gi|83632653|gb|ABC28620.1| tyrosine recombinase XerD [Hahella chejuensis KCTC 2396] Length = 284 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 97/296 (32%), Positives = 151/296 (51%), Gaps = 16/296 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E+GLS+ T SY CD L+ LA + + +T+ S ++ +F++ R + Sbjct: 2 LWLEQGLSENTRMSYRCD----LLRLAEWLMGRG--RTLVDASREDLFSFLAVRMQKGAK 55 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S R LS ++ F +YL + + E L + + K LP A++E + LL Sbjct: 56 GASSARMLSTLRKFYRYLLREGVVQEDPTLRIEHPKVGRLLPGAISEMEV-----EQLLA 110 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 ++ I+AR+ +L +LY GLR+SE +SL + Q LR+ GKG K R+ PL Sbjct: 111 EPDASQPIEARDKVMLEVLYASGLRVSELVSLRLYQVNLRQGVLRVVGKGGKERLTPLGE 170 Query: 205 SVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 + + Y + P L LF +RG + F I+ G+ + T H Sbjct: 171 QAVEQLEAYIKGVRPQLLAGREDGVLFPSMRGSEMTRQTFWHRIKLYASRSGISKNITPH 230 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 TLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + +++ + HP Sbjct: 231 TLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKAR----LQQLHSRHHP 282 >gi|187736389|ref|YP_001878501.1| integrase family protein [Akkermansia muciniphila ATCC BAA-835] gi|187426441|gb|ACD05720.1| integrase family protein [Akkermansia muciniphila ATCC BAA-835] Length = 295 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 89/302 (29%), Positives = 156/302 (51%), Gaps = 15/302 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +++ L E+GLS +Y+ RQ L A + E T + Q + AF+ Sbjct: 6 ERFIRFLAAEKGLST----AYQLSVRQTLEEFARFLEMDNT--GLAQTGIDTLSAFLRHL 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + + S++ + ++ F ++L I + + + ++ SLP L++K V Sbjct: 60 QDRGMARSSMRVEMVHLRIFFRWLAGTGILEKDPSVFLEMPRQGLSLPHVLDQKT----V 115 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 N+L + + R+ A+L ++Y CG+R+SE ++ ++ D++ +R+ GKG+K R Sbjct: 116 SNLLESIDIQDIPLGCRDRALLEMIYACGMRVSEIINCKLESFDKDEAFVRVLGKGNKTR 175 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ S A+ Y + P + + +F +RG+PL ++ +R+ R GL Sbjct: 176 LVPVGRSALDALQMYLEKGRPKLVRTGTKSHIFLTVRGRPLTRERIRQILRERARAAGLE 235 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 H LRHSFATHLL NG DLR IQ +LGH +STTQIYT++ + + I+ + Sbjct: 236 QHVFPHILRHSFATHLLENGADLRIIQEMLGHADISTTQIYTHLEQQR----LNSIHHRF 291 Query: 318 HP 319 HP Sbjct: 292 HP 293 >gi|94264969|ref|ZP_01288740.1| Tyrosine recombinase XerC [delta proteobacterium MLMS-1] gi|93454572|gb|EAT04850.1| Tyrosine recombinase XerC [delta proteobacterium MLMS-1] Length = 339 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 102/336 (30%), Positives = 144/336 (42%), Gaps = 49/336 (14%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLA------------------------FYTEE 56 +L+ L +E+G S T+ SY+ D R+F+ E+ Sbjct: 12 FLRWLRVEKGYSGHTVASYQRDLREFVASAGRRSAPAPTAVGRKGRGRGRAAAAPLPAED 71 Query: 57 KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116 + QL T +RAF+ + S+ R LS ++SF ++L+K I + + Sbjct: 72 PAAELDVAQLDATRVRAFVYSLHGRNKSS-SVARKLSALRSFFRFLRKNGIINDDPAAAI 130 Query: 117 RNLKKSNSLPRALNEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174 K LP L+ VD V LL AR+ AIL LLY GLR+SE Sbjct: 131 AAPKGEGYLPVVLS-------VDEVFSLLEMPGAGDRFAARDRAILELLYATGLRVSELA 183 Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL------- 227 L + +R+ GKG+K R+VP+ + AI Y L Sbjct: 184 GLDLAQLDLADGMVRVVGKGNKERLVPMGTAAVAAIEAYLPQRQVLLRQTAGQQKEGKKA 243 Query: 228 ----PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283 PL RG L +R ++ G+ + H LRHSFATHLL G DLR + Sbjct: 244 RGADPLLVNSRGGRLTSRSIERLVKMYAERAGIAARVSPHALRHSFATHLLEMGADLRVV 303 Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 Q +LGH LSTTQ YT++N D + +YDQ HP Sbjct: 304 QELLGHASLSTTQRYTHLNL----DHLTAVYDQAHP 335 >gi|315089284|gb|EFT61260.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL072PA1] Length = 315 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 79/285 (27%), Positives = 138/285 (48%), Gaps = 9/285 (3%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T++ Y D + + ++ T+ ++ +++RA+++ R +++R S Sbjct: 38 TIRGYRADLIDLMGHAHSHGDD-----TLGRIGTSQVRAWLADTRVAGASAATMQRRWSA 92 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + F ++ + + + + K LP L QA ++D + H+ A Sbjct: 93 ARVFFRWAANEGLISADPTTALNSAKVPKRLPATLGVDQARHILDEAVAQARHDESPHGA 152 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R++AIL +LYG GLR+ E L ++ + T+++ GKGDK R VP+ +AI + Sbjct: 153 RDAAILEVLYGGGLRVGELCGLDLGDVDRSRRTVKVTGKGDKERTVPMGAPALRAIDTWL 212 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 + + LF G RG+ ++ V +R + R H LRH+ ATHLL Sbjct: 213 PRREEWVGPHSGQALFLGARGRRIDQRVVRRVVHTHLRAEPDSPDLGPHGLRHAMATHLL 272 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 G DLR++Q ILGH L+TTQIYT+V+++ + + Q HP Sbjct: 273 EGGADLRTVQDILGHESLATTQIYTHVSTER----LRTAFRQAHP 313 >gi|86159117|ref|YP_465902.1| tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-C] gi|85775628|gb|ABC82465.1| Tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-C] Length = 342 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 98/314 (31%), Positives = 145/314 (46%), Gaps = 23/314 (7%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 EL +E + + L E+ S T ++Y+ D Q+ +LA Q + S +R Sbjct: 10 ELPEELRRFDAYLASEKRASPHTRKAYQVDLAQYAAYLADQG------QPLVPSSPALVR 63 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F++ R+ G SL R LS ++S ++L + + + + + K+ LP L E+ Sbjct: 64 GFLA-RQAGAAGAVSLGRKLSALRSLYRFLVREGLAPGNPARAVASPKRPKRLPEVLPEE 122 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + LV+ + + R+ A L LLYG GLR+SE L +++ +R+ G Sbjct: 123 EVAALVETP---DAAGEAPLALRDRAFLELLYGSGLRVSELTGLDLEDLDLAGGLVRVLG 179 Query: 193 KGDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 K +K RIVP +A+ Y D L + +F RG L R + Sbjct: 180 KRNKERIVPFGAPAAEALRRYLDGARPVLAAGPDHAGAAEAVFLNFRGGRLTSRSVARRL 239 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 GLP H LRH FATHLL NG DLR IQ +LGH LSTTQ YT++ Sbjct: 240 DGWVLASGLPRHVHPHVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTHL------ 293 Query: 308 DW--MMEIYDQTHP 319 DW + +YD HP Sbjct: 294 DWKRLAAVYDAAHP 307 >gi|332528836|ref|ZP_08404810.1| phage integrase [Hylemonella gracilis ATCC 19624] gi|332041695|gb|EGI78047.1| phage integrase [Hylemonella gracilis ATCC 19624] Length = 369 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 89/324 (27%), Positives = 159/324 (49%), Gaps = 34/324 (10%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +L ++ +E+ L++ T++ Y D + F + ++ Q+ +R +I++ Sbjct: 40 QYLAHVRVEKRLAQRTVELYTLDLDKLGEF------ARQAGVSLLQVHSAHVRRWIAQMH 93 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 R + LSG + F +L ++ T + + ++R K + LP+AL+ A+ L Sbjct: 94 AGGRSGRGIALILSGWRGFYAWLGRQGYITSNPVQDVRAPKAAKPLPKALSVDDAVRLAS 153 Query: 140 NVLLHTSHETK---------WIDARNSAILYLLYGCGLRISE--ALSLTP--------QN 180 + +T W AR++A+ LLY GLR+SE L + P + Sbjct: 154 YRGGESGADTPQGDALDDDPWFSARDAAMTELLYSSGLRVSELTGLDVAPSEAARKAGRG 213 Query: 181 IMDDQST-LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRG 235 +D Q+ + +QGKG K R VP+ + RKA+L++ ++ ++ + Q LF G G Sbjct: 214 WLDLQAGEVEVQGKGGKRRAVPVGTAARKALLQWLEVRGQGVSAAALQDGQTALFIGRNG 273 Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 L P + +++ GL H LRHSFA+H+L + GDLR++Q +LGH + TT Sbjct: 274 TRLTPQSIWQRLKRRSLLAGLATPVHPHMLRHSFASHVLQSSGDLRAVQELLGHANIGTT 333 Query: 296 QIYTNVNSKNGGDWMMEIYDQTHP 319 Q+YT ++ ++ + YD HP Sbjct: 334 QVYTRLDFQH----LARAYDDAHP 353 >gi|170730010|ref|YP_001775443.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa M12] gi|167964803|gb|ACA11813.1| site-specific recombinase [Xylella fastidiosa M12] Length = 277 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 82/261 (31%), Positives = 133/261 (50%), Gaps = 14/261 (5%) Query: 66 LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 L +++AF+S + + +SL+R LS + F +L K + +R K L Sbjct: 31 LDRAQLQAFVSAEHRRGLSPKSLQRRLSACRGFYAWLVKSGHIAVNPAAGLRAPKALRKL 90 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 PR L+ +A++ V +T + R+ A+L L Y GLR+SE L + D Sbjct: 91 PRILDADEAVSFV-----QIPTDTP-LGLRDRALLELFYSSGLRLSELCGLRWDGLDLDA 144 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245 + + GKG + R+VP+ A+ E+ C Q P+F G G P++ Q Sbjct: 145 GLVSVLGKGSRQRVVPVGSYALSALREW---CASSGG-GAQQPVFPGRYGGPISARAVQV 200 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 I+QL + G+ H LRHSFA+HLL + GDLR +Q +LGH ++TTQIYT+++ + Sbjct: 201 RIKQLAQRQGMAKHVHPHMLRHSFASHLLESSGDLRGVQELLGHADITTTQIYTHLDFQ- 259 Query: 306 GGDWMMEIYDQTHPSITQKDK 326 ++ ++YD HP +K + Sbjct: 260 ---YLSKVYDAAHPRARRKAR 277 >gi|71274748|ref|ZP_00651036.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Dixon] gi|71901196|ref|ZP_00683299.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] gi|71164480|gb|EAO14194.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Dixon] gi|71729040|gb|EAO31168.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] Length = 277 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 82/261 (31%), Positives = 133/261 (50%), Gaps = 14/261 (5%) Query: 66 LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 L +++AF+S + + +SL+R LS + F +L K + +R K L Sbjct: 31 LDRAQLQAFVSAEHRRGLSPKSLQRRLSACRGFYAWLVKSGHIAVNPAAGLRAPKALRKL 90 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 PR L+ +A++ V +T + R+ A+L L Y GLR+SE L + D Sbjct: 91 PRILDADEAVSFV-----QIPTDTP-LGLRDRALLELFYSSGLRLSELCGLRWDGLDLDA 144 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245 + + GKG + R+VP+ A+ E+ C Q P+F G G P++ Q Sbjct: 145 GLVSVLGKGSRQRVVPVGSYALSALREW---CASSGG-GAQQPVFPGRYGGPISARAVQV 200 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 I+QL + G+ H LRHSFA+HLL + GDLR +Q +LGH ++TTQIYT+++ + Sbjct: 201 RIKQLAQRQGMAKHVHPHMLRHSFASHLLESSGDLRGVQELLGHADITTTQIYTHLDFQ- 259 Query: 306 GGDWMMEIYDQTHPSITQKDK 326 ++ ++YD HP +K + Sbjct: 260 ---YLSKVYDAAHPRARRKAR 277 >gi|310766537|gb|ADP11487.1| Tyrosine recombinase xerD [Erwinia sp. Ejp617] Length = 297 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 95/303 (31%), Positives = 151/303 (49%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L IER L++ T+ SY D R +LA + ++ ++ F+++R Sbjct: 8 EQFLDALWIERNLAQNTVDSYRLDLRSLGDWLAHQQLSLLNVEVF------NLQEFLAQR 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K+ + + + K LP+ L+E Q L+ Sbjct: 62 LEGGYKATSSARLLSAMRRLFQYLYREKLREDDPSALLSSPKLPQRLPKDLSEAQVERLL 121 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L I+ R+ A+L LLY GLR++E + LT +I Q +R+ GKG+K R Sbjct: 122 QAPCLEQP-----IELRDKAMLELLYATGLRVTELVGLTLSDISLRQGVVRVIGKGNKER 176 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ I +Y + P+ LN LF R K + F I+ G+ Sbjct: 177 LVPMGEEAVHWIEQYIEYGRPWLLNGQTIDVLFPSNRAKQMTRQTFWHRIKHYATLAGID 236 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Q Sbjct: 237 SDKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQ 292 Query: 317 THP 319 HP Sbjct: 293 HHP 295 >gi|50843000|ref|YP_056227.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes KPA171202] gi|50840602|gb|AAT83269.1| integrase/recombinase [Propionibacterium acnes KPA171202] gi|313763561|gb|EFS34925.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL013PA1] gi|313793954|gb|EFS41978.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL110PA1] gi|313801341|gb|EFS42592.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL110PA2] gi|313816741|gb|EFS54455.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL059PA1] gi|313829428|gb|EFS67142.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL063PA2] gi|313839938|gb|EFS77652.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL086PA1] gi|314914715|gb|EFS78546.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL005PA4] gi|314919323|gb|EFS83154.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL050PA1] gi|314920767|gb|EFS84598.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL050PA3] gi|314930647|gb|EFS94478.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL067PA1] gi|314954397|gb|EFS98803.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL027PA1] gi|314957518|gb|EFT01621.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL002PA1] gi|314963694|gb|EFT07794.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL082PA1] gi|314968478|gb|EFT12576.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL037PA1] gi|315079544|gb|EFT51537.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL053PA2] gi|315099188|gb|EFT71164.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL059PA2] gi|315100329|gb|EFT72305.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL046PA1] gi|315106859|gb|EFT78835.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL030PA1] gi|315108987|gb|EFT80963.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL030PA2] gi|327452023|gb|EGE98677.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL092PA1] gi|327454940|gb|EGF01595.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL087PA3] gi|327457774|gb|EGF04429.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL083PA2] gi|328755227|gb|EGF68843.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL087PA1] gi|328758294|gb|EGF71910.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL025PA2] Length = 315 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 79/285 (27%), Positives = 138/285 (48%), Gaps = 9/285 (3%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T++ Y D + + ++ T+ ++ +++RA+++ R +++R S Sbjct: 38 TIRGYRADLIDLMGHAHSHGDD-----TLGRIGTSQVRAWLADTRVAGASAATMQRRWSA 92 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + F ++ + + + + K LP L QA ++D + H+ A Sbjct: 93 ARVFFRWAANEGLISADPTTALNSAKVPKRLPATLGVDQARHILDEAVAQARHDESPHGA 152 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R++AIL +LYG GLR+ E L ++ + T+++ GKGDK R VP+ +AI + Sbjct: 153 RDAAILEVLYGGGLRVGELCGLDLGDVDRSRRTVKVTGKGDKERTVPMGAPALRAIDTWL 212 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 + + LF G RG+ ++ V +R + R H LRH+ ATHLL Sbjct: 213 PRREEWVGPHSGQALFLGARGRRIDQRVVRRVVHTDLRAEPDSPDLGPHGLRHAMATHLL 272 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 G DLR++Q ILGH L+TTQIYT+V+++ + + Q HP Sbjct: 273 EGGADLRTVQDILGHESLATTQIYTHVSTER----LRTAFRQAHP 313 >gi|254374937|ref|ZP_04990418.1| site specific recombinase XerD [Francisella novicida GA99-3548] gi|151572656|gb|EDN38310.1| site specific recombinase XerD [Francisella novicida GA99-3548] Length = 292 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 95/300 (31%), Positives = 147/300 (49%), Gaps = 18/300 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L NL +E GLS+ T+ SY D L FL Y + I L + ++ AFIS R Sbjct: 8 FLDNLWLEHGLSQNTISSYRTD----LKFLQNYFAKTDLIS----LDFEQLYAFISYRSK 59 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 RS R +S ++ F +L T + + K + LP+ + E Sbjct: 60 NGYSSRSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDV-----E 114 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LL T+ + R+ A+L L+Y GLR+SE + L +I + +++ GKG K RIV Sbjct: 115 RLLQAPDMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIV 174 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ + + +Y+ L+ N + +F K + F I+ G+ Sbjct: 175 PIGEYALEYLQKYFAEARMSLSKNFKEKAVFISKHTKRITRQSFWHRIKNYALIAGINTD 234 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLRS+Q +LGH +STT IYT+++ + EIY + HP Sbjct: 235 ISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR----LQEIYQKHHP 290 >gi|297626543|ref|YP_003688306.1| Site-specific recombinase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922308|emb|CBL56880.1| Site-specific recombinase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 331 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 91/311 (29%), Positives = 146/311 (46%), Gaps = 22/311 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA---FYTEEKITIQTIRQLSYTEIRAFI 75 +++L +L +ERGLS T+ +Y D ++L L+ +IT + R Sbjct: 29 EDYLDHLGVERGLSPNTVAAYRRDLTRYLRHLSSRGIDDPSRITTADVTSFEEELSRGDA 88 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 S + + S+ R++ ++ F + + + + + + LP+AL + Sbjct: 89 SHK---ALAPSSVGRAVVAVRMFHGFAAREGLVDHNVAAALHPPRAGKRLPKALGVDEVA 145 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----MDDQSTLRIQ 191 L+D++ T I R++A+ +LYG G RISEALSL ++ D LR+ Sbjct: 146 RLIDSIERQTP-----IGLRDAALFEVLYGTGARISEALSLDVDDLTRVLADPDGPLRVV 200 Query: 192 GKGDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 GKG+K R+VPL R A+ + + LF RG L+ +R Sbjct: 201 GKGNKERVVPLGSYARSAVQAWLVRGRPALAERAREFTPALFLNTRGARLSRQSAWEALR 260 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 R G+ H+LRHSFATHLL G D+R +Q +LGH +STTQIYT V ++ Sbjct: 261 TRARQAGITADIGPHSLRHSFATHLLDGGADIRVVQELLGHASVSTTQIYTEVTAQQ--- 317 Query: 309 WMMEIYDQTHP 319 + E+Y + P Sbjct: 318 -LREVYSSSFP 327 >gi|226946779|ref|YP_002801852.1| site-specific tyrosine recombinase XerC [Azotobacter vinelandii DJ] gi|259710429|sp|C1DJ58|XERC_AZOVD RecName: Full=Tyrosine recombinase xerC gi|226721706|gb|ACO80877.1| tyrosine recombinase XerC [Azotobacter vinelandii DJ] Length = 299 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 96/310 (30%), Positives = 148/310 (47%), Gaps = 29/310 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +L ER +S+ TL Y D + E+ + L +R I++ Sbjct: 8 FLDHLRNERQVSQHTLDGYRRDLAKVHAHC-----EREGLDAWSALDAGRLRRLIARLHL 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q RSL R LS ++ F +YL + + K LPR L+ + L+D Sbjct: 63 QGHSSRSLARLLSALRGFYRYLLREGRCRHDPAAGLSPPKGERRLPRTLDADRTQQLLDG 122 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + E +I R+ A+L L Y GLR+SE + L + +R+ GKG+K R + Sbjct: 123 AV-----EDDFIARRDQAMLELFYSSGLRLSELVGLDLDRLDLAAGLVRVHGKGNKARDL 177 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPLNPGVFQRYIRQLR-RYL 254 P+ R+A+ + L+L Q LF G G+ L P Q +RQ R L Sbjct: 178 PIGSKAREALRAW-------LSLRAQARPADGALFVGRTGRRLTPRAVQLRVRQAGVREL 230 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G L H LRHSFA+HLL + DLR++Q +LGH ++TTQIYT+++ ++ + +Y Sbjct: 231 GQHLHP--HMLRHSFASHLLESSQDLRAVQELLGHADIATTQIYTHLDFQH----LAAVY 284 Query: 315 DQTHPSITQK 324 DQ HP ++ Sbjct: 285 DQAHPRARRR 294 >gi|259909555|ref|YP_002649911.1| Tyrosine recombinase [Erwinia pyrifoliae Ep1/96] gi|224965177|emb|CAX56709.1| Tyrosine recombinase [Erwinia pyrifoliae Ep1/96] Length = 309 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 95/303 (31%), Positives = 151/303 (49%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L IER L++ T+ SY D R +LA + ++ ++ F+++R Sbjct: 20 EQFLDALWIERNLAQNTVDSYRLDLRSLGDWLAHQQLSLLNVEVF------NLQEFLAQR 73 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K+ + + + K LP+ L+E Q L+ Sbjct: 74 LEGGYKATSSARLLSAMRRLFQYLYREKLREDDPSALLSSPKLPQRLPKDLSEAQVERLL 133 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L I+ R+ A+L LLY GLR++E + LT +I Q +R+ GKG+K R Sbjct: 134 QAPCLEQP-----IELRDKAMLELLYATGLRVTELVGLTLSDISLRQGVVRVIGKGNKER 188 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ I +Y + P+ LN LF R K + F I+ G+ Sbjct: 189 LVPMGEEAVHWIEQYIEYGRPWLLNGQTIDVLFPSNRAKQMTRQTFWHRIKHYATLAGID 248 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Q Sbjct: 249 SDKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQ 304 Query: 317 THP 319 HP Sbjct: 305 HHP 307 >gi|23335402|ref|ZP_00120638.1| COG4974: Site-specific recombinase XerD [Bifidobacterium longum DJO10A] gi|227547607|ref|ZP_03977656.1| integrase/recombinase XerD family protein [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239621212|ref|ZP_04664243.1| tyrosine recombinase xerD [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312132535|ref|YP_003999874.1| integrase/recombinase [Bifidobacterium longum subsp. longum BBMN68] gi|317482508|ref|ZP_07941524.1| tyrosine recombinase XerD [Bifidobacterium sp. 12_1_47BFAA] gi|322689456|ref|YP_004209190.1| recombinase [Bifidobacterium longum subsp. infantis 157F] gi|227211862|gb|EEI79758.1| integrase/recombinase XerD family protein [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239515673|gb|EEQ55540.1| tyrosine recombinase xerD [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291516706|emb|CBK70322.1| tyrosine recombinase XerD subunit [Bifidobacterium longum subsp. longum F8] gi|311773469|gb|ADQ02957.1| probable integrase/recomBinase [Bifidobacterium longum subsp. longum BBMN68] gi|316916060|gb|EFV37466.1| tyrosine recombinase XerD [Bifidobacterium sp. 12_1_47BFAA] gi|320460792|dbj|BAJ71412.1| recombinase [Bifidobacterium longum subsp. infantis 157F] Length = 311 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 88/307 (28%), Positives = 151/307 (49%), Gaps = 17/307 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L ++ +ERGL+ T+ +YE D +++ +L E I ++ ++ +I+ Sbjct: 13 EQFLVHIGVERGLATATVTAYESDIAKYIDWL-----ETRGIHEPDAITKQDVEDYIAAL 67 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 RS R L+ I F ++ + T ++ K +++LP L + L+ Sbjct: 68 DQAGESARSKARRLASIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLL 127 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + S T + R+ A+L +Y G R+SEA +I D+ R+ GKG K R Sbjct: 128 DAAAVGGS--TDPVVLRDKALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQR 185 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNL--NIQLP----LFRGIRGKPLNPGVFQRYIRQLRR 252 +VPL +AI Y + +L + ++P LF RGK ++ ++ Sbjct: 186 LVPLGSYACRAITAYLNAGRGELEQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGE 245 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 G+ HTLRHSFATHL+ G D+R++Q +LGH ++TTQIYT+V+ + ++E Sbjct: 246 RAGITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPET----LIE 301 Query: 313 IYDQTHP 319 Y +HP Sbjct: 302 TYLTSHP 308 >gi|296126655|ref|YP_003633907.1| tyrosine recombinase XerD [Brachyspira murdochii DSM 12563] gi|296018471|gb|ADG71708.1| tyrosine recombinase XerD [Brachyspira murdochii DSM 12563] Length = 310 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 92/285 (32%), Positives = 152/285 (53%), Gaps = 14/285 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +E+GLS TL+SY+ R +I+L F T K +TI + + +I F+S+R+ Sbjct: 15 YLNYEAVEKGLSSNTLESYK---RDIVIYLDFLTRNK---KTILKATRKDIEKFLSERKE 68 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q R++ R+ I + K+L +++ N+ ++ L R L E T VD+ Sbjct: 69 QGSKSRTVARNKVSIVNLYKFLVMENYISKNPTDNLEVIR----LKRVLPESLTTTEVDD 124 Query: 141 VL-LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 +L +H K + R+ AI L+Y GLR+SE SL +I + L+I+GKG+K RI Sbjct: 125 LLSVHNEKTDKGL--RDKAIFELMYSSGLRVSEICSLRIDDIFFEGKYLKIRGKGNKERI 182 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VP+ + Y + + LF RG ++ + +++ + + Sbjct: 183 VPINDRALDILQRYIQTSRVIMVKGKKTSELFLNFRGDKISRVGIWKIVKETMKKSNITK 242 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + HTLRHSFATHL+ +G DLR++Q +LGH ++TT+IYT+V+S Sbjct: 243 NVYPHTLRHSFATHLIQHGADLRAVQRMLGHSDITTTEIYTHVDS 287 >gi|88860260|ref|ZP_01134898.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas tunicata D2] gi|88817458|gb|EAR27275.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas tunicata D2] Length = 301 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 88/301 (29%), Positives = 153/301 (50%), Gaps = 17/301 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ + +E+G+S+ TL +Y D +F F I + + ++ +++ +++ R Sbjct: 16 EQFLEAIWLEQGVSENTLAAYRTDLTKFAEF--------ILPKGLIEVEQQDVQYYLAHR 67 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 RS R++S +K F +Y + K + + + ++ K SLP+ L+E++ L+ Sbjct: 68 LDNGFKPRSTARTVSALKRFYQYYLREKQLSTNPMTHIGQPKAGQSLPKTLSEEEVGRLL 127 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D L I R+ A+L LLY GLR+SE + L + I Q+ + ++GKG+K R Sbjct: 128 DAPDLEEP-----IGLRDKAMLELLYATGLRVSELVGLRIEQINLRQAVVFVKGKGNKER 182 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +VP+ I + L + +F RG + F I+ G+ Sbjct: 183 LVPMGEEALDCIERFIKEGRPQLIKHATDFVFPSKRGIGMTRQTFWHRIKHYALVAGIES 242 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + HTLRH+FATHL+++G DLR +Q +LGH LSTTQIYT+V + + ++ H Sbjct: 243 ELSPHTLRHAFATHLINHGADLRVVQMMLGHSDLSTTQIYTHVAKER----LKSLHQAHH 298 Query: 319 P 319 P Sbjct: 299 P 299 >gi|283479632|emb|CAY75548.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163] Length = 316 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 95/303 (31%), Positives = 151/303 (49%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L IER L++ T+ SY D R +LA + ++ ++ F+++R Sbjct: 27 EQFLDALWIERNLAQNTVDSYRLDLRSLGDWLAHQQLSLLNVEVF------NLQEFLAQR 80 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K+ + + + K LP+ L+E Q L+ Sbjct: 81 LEGGYKATSSARLLSAMRRLFQYLYREKLREDDPSALLSSPKLPQRLPKDLSEAQVERLL 140 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L I+ R+ A+L LLY GLR++E + LT +I Q +R+ GKG+K R Sbjct: 141 QAPCLEQP-----IELRDKAMLELLYATGLRVTELVGLTLSDISLRQGVVRVIGKGNKER 195 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ I +Y + P+ LN LF R K + F I+ G+ Sbjct: 196 LVPMGEEAVHWIEQYIEYGRPWLLNGQTIDVLFPSNRAKQMTRQTFWHRIKHYATLAGID 255 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Q Sbjct: 256 SDKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQ 311 Query: 317 THP 319 HP Sbjct: 312 HHP 314 >gi|313887306|ref|ZP_07820997.1| phage integrase, N-terminal SAM domain protein [Porphyromonas asaccharolytica PR426713P-I] gi|332299242|ref|YP_004441163.1| Tyrosine recombinase xerC [Porphyromonas asaccharolytica DSM 20707] gi|312923225|gb|EFR34043.1| phage integrase, N-terminal SAM domain protein [Porphyromonas asaccharolytica PR426713P-I] gi|332176305|gb|AEE11995.1| Tyrosine recombinase xerC [Porphyromonas asaccharolytica DSM 20707] Length = 314 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 91/281 (32%), Positives = 149/281 (53%), Gaps = 16/281 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E+ LS ++ SY D + ++ E + + ++R++ + F + I Sbjct: 17 LRLEQHLSDNSIDSYLYDVDKLYTYI-----EDMGL-SLREVELQHLNNFAAHLLDLGIS 70 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNI-LNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 RSL R LSG+KSF ++L T E I + ++ ++ + + L E L +D+ LL Sbjct: 71 MRSLARVLSGVKSFFRFL-----TLEEEIERDPTDMLQTPPIHKKLPEVLTLAEIDS-LL 124 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 E + +R++AI+ +LY CGLR+SE LT ++ D+ L + GKG K R+VP+ Sbjct: 125 GAIDEDRIEASRDTAIIEVLYSCGLRVSELCGLTYSDVFLDEGYLHVWGKGRKERLVPMS 184 Query: 204 PSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 P + Y + P+ N + LF RG+P++ IR L G+ + Sbjct: 185 PKAVADVQRYLN-DPYRYNAKPEYDQYLFISRRGQPISRITVFCLIRTLAEQAGIQKEIS 243 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 HTLRHSFATHLL G DL +IQ ++GH ++TT++YT+V+ Sbjct: 244 PHTLRHSFATHLLEGGADLHAIQLMMGHESIATTEVYTHVD 284 >gi|253988692|ref|YP_003040048.1| site-specific tyrosine recombinase XerD [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211637984|emb|CAR66612.1| tyrosine recombinase xerd [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780142|emb|CAQ83303.1| tyrosine recombinase xerd [Photorhabdus asymbiotica] Length = 303 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 97/306 (31%), Positives = 158/306 (51%), Gaps = 23/306 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + +E L++ TL SY D + +L Y + +++Q+I ++++F+++R Sbjct: 14 EQFLDAIWLEHDLAENTLISYRLDLQALDNWLVNYGHDLLSVQSI------DLQSFLAER 67 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +Y + K+ + + K LP+ L+EKQ Sbjct: 68 VDGGYKASSSARLLSAMRQLFQYFYREKMRADDPTALLSAPKLPKRLPKDLSEKQV---- 123 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL+ + ++ R+ A+L +LY CGLR+SE + LT ++ Q +R+ GKG+K R Sbjct: 124 -EALLNAPCTDQPVELRDKAMLEVLYACGLRVSELVGLTLSDVSLRQGVVRVIGKGNKER 182 Query: 199 IVPLLPSVRKAI--LEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 +VPL +AI LE Y D LN LF RG+ + F I+ Sbjct: 183 LVPL---GEEAIYWLENYIEYGRDGLLNGATLDVLFPSNRGRQMTRQTFWYRIKHYALLA 239 Query: 255 GLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + + Sbjct: 240 GIDTERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRLL 295 Query: 314 YDQTHP 319 + Q HP Sbjct: 296 HQQHHP 301 >gi|189439098|ref|YP_001954179.1| Integrase [Bifidobacterium longum DJO10A] gi|189427533|gb|ACD97681.1| Integrase [Bifidobacterium longum DJO10A] Length = 308 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 88/307 (28%), Positives = 151/307 (49%), Gaps = 17/307 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L ++ +ERGL+ T+ +YE D +++ +L E I ++ ++ +I+ Sbjct: 10 EQFLVHIGVERGLATATVTAYESDIAKYIDWL-----ETRGIHEPDAITKQDVEDYIAAL 64 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 RS R L+ I F ++ + T ++ K +++LP L + L+ Sbjct: 65 DQAGESARSKARRLASIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLL 124 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + S T + R+ A+L +Y G R+SEA +I D+ R+ GKG K R Sbjct: 125 DAAAVGGS--TDPVVLRDKALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQR 182 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNL--NIQLP----LFRGIRGKPLNPGVFQRYIRQLRR 252 +VPL +AI Y + +L + ++P LF RGK ++ ++ Sbjct: 183 LVPLGSYACRAITAYLNAGRGELEQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGE 242 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 G+ HTLRHSFATHL+ G D+R++Q +LGH ++TTQIYT+V+ + ++E Sbjct: 243 RAGITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPET----LIE 298 Query: 313 IYDQTHP 319 Y +HP Sbjct: 299 TYLTSHP 305 >gi|228476153|ref|ZP_04060861.1| tyrosine recombinase XerD [Staphylococcus hominis SK119] gi|314936376|ref|ZP_07843723.1| tyrosine recombinase XerD [Staphylococcus hominis subsp. hominis C80] gi|228269976|gb|EEK11456.1| tyrosine recombinase XerD [Staphylococcus hominis SK119] gi|313654995|gb|EFS18740.1| tyrosine recombinase XerD [Staphylococcus hominis subsp. hominis C80] Length = 295 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 94/305 (30%), Positives = 156/305 (51%), Gaps = 21/305 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE---IRAFI 75 + +L+ ++IE+GLS T+ +Y D ++ EE + I + + + I+ + Sbjct: 6 EEFLKFIQIEKGLSDNTIGAYRRDLAKY--------EEYMKEHKIAHIDFIDRQVIQECL 57 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 Q +S+ R +S I++F ++ + K + + + K LP L ++ L Sbjct: 58 GYLIDQGASAKSMARFISTIRNFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEVEEVL 117 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L L T K R+ IL LLY G+R+SE + + ++I +R+ GKG+ Sbjct: 118 QL-----LETPDLNKKNGYRDRTILELLYATGMRVSELIQINIEDINLIMGFVRVFGKGN 172 Query: 196 KIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 K RI+PL +V + + Y + + P L I LF + G+PL + I+Q Sbjct: 173 KERIIPLGDTVIEFLDTYLEKVRPQLLKKTITNVLFLNMHGRPLTRQGIWKMIKQYGLKA 232 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 + + T HTLRHSFATHLL NG DLR++Q +LGH +STTQ+YT+V+ + ++Y Sbjct: 233 NINKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRQMY 288 Query: 315 DQTHP 319 +Q HP Sbjct: 289 NQFHP 293 >gi|288933626|ref|YP_003437685.1| tyrosine recombinase XerD [Klebsiella variicola At-22] gi|288888355|gb|ADC56673.1| tyrosine recombinase XerD [Klebsiella variicola At-22] Length = 298 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 92/307 (29%), Positives = 159/307 (51%), Gaps = 17/307 (5%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 L + + +L L +ER L++ TL +Y R + + + +++ ++ +++A Sbjct: 5 LAQIEQFLDALWLERNLAENTLSAYR---RDLTMLVEWLHHRGLSLASV---GSDDLQAL 58 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 +++R+T S R +S ++ F ++L + KI + + + K LP+ L+E Q Sbjct: 59 LAERQTGGYKATSTARLISAVRRFFQHLYREKIRPDDPSALLASPKLPQRLPKDLSEAQV 118 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 L+ L+ ++ R+ A+L +LY GLR+SE + LT +I Q LR+ GKG Sbjct: 119 ERLLQAPLVEQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVLRVIGKG 173 Query: 195 DKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 +K R+VPL + Y + P+ LN LF R + + F I+ Sbjct: 174 NKERLVPLGEEAVMWVENYLEYGRPWLLNGVASDVLFPSQRAQQMTRQTFWHRIKHYAVL 233 Query: 254 LGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 G+ + + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + + Sbjct: 234 AGIDSAKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQ 289 Query: 313 IYDQTHP 319 ++ Q HP Sbjct: 290 LHQQHHP 296 >gi|229180107|ref|ZP_04307451.1| Tyrosine recombinase xerC [Bacillus cereus 172560W] gi|228603316|gb|EEK60793.1| Tyrosine recombinase xerC [Bacillus cereus 172560W] Length = 299 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 88/308 (28%), Positives = 161/308 (52%), Gaps = 25/308 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q ++ L+IER SK T+ SY+ D F+ F+ ++ I + ++Y ++R +++ Sbjct: 8 QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----KREGISSFLDVTYADVRLYLTML 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137 +K+ +S+ R +S ++S ++L R+ + N + +L KK S+P+ L ++ Sbjct: 63 HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIPKFLYAEEL--- 118 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 L S + RN A+L L+Y G+R+SE ++L +I T+ + GKG K Sbjct: 119 --EELFEVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 176 Query: 198 RIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 R +P + +++ Y + + D + ++ +F +G PL + + +L Sbjct: 177 RYIPFGSYAQDSLITYIENGRKQLVNKTDEDSHM---VFLNAKGTPLTSRGVRYVLNELI 233 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 + L + + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ + + Sbjct: 234 KKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----ERLR 289 Query: 312 EIYDQTHP 319 +Y + HP Sbjct: 290 SVYMKHHP 297 >gi|307718592|ref|YP_003874124.1| tyrosine recombinase XerC [Spirochaeta thermophila DSM 6192] gi|306532317|gb|ADN01851.1| tyrosine recombinase XerC [Spirochaeta thermophila DSM 6192] Length = 312 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 96/328 (29%), Positives = 160/328 (48%), Gaps = 22/328 (6%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 MEG ++ + L+ +L +L RGLS+ T++SY D + FL EK+ Sbjct: 3 MEGGSVSTLPQETLI---DRFLAHLSHMRGLSEATVRSYRNDLVKVGAFL-----EKLGT 54 Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 + + +IR +++ + S+ R LS ++S+ ++L+K + ++S + + ++K Sbjct: 55 DLV-SATREDIRHCVAEYTLARQAPSSINRMLSSLRSWYRFLRKEGVRSDSPMEGISSVK 113 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 LP L E + L+D + + R+ A+L +LY G R+ E +SLT Sbjct: 114 AGKRLPSFLFEDEVDRLLDI------EGSDFASLRDRALLEVLYSTGCRVQELVSLTTSG 167 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF---DLNLNIQLPLFRGIRGKP 237 + + ++GKG K R++ L RKA+ Y L + + LF +G P Sbjct: 168 VQVSRGWCVVKGKGGKERLLFLGLGARKALAAYLPLRQALLERMGRREEGALFVNQKGSP 227 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L P I + R GL + H RHSFATH+LS G DLR +Q +LGH LSTTQ+ Sbjct: 228 LTPRGVAYIIERRAREKGLEKRISPHVFRHSFATHVLSRGADLRVVQEMLGHASLSTTQV 287 Query: 298 YTNVNSKNGGDWMMEIYDQTHPSITQKD 325 YT+++ + +Y + HP + D Sbjct: 288 YTHLSLPA----LKRMYRKAHPHAERSD 311 >gi|237732945|ref|ZP_04563426.1| site-specific tyrosine recombinase xerD [Mollicutes bacterium D7] gi|229384014|gb|EEO34105.1| site-specific tyrosine recombinase xerD [Coprobacillus sp. D7] Length = 302 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 90/305 (29%), Positives = 160/305 (52%), Gaps = 14/305 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 + Q L +E+GLSK T+ SY D LI + + E+ I I ++ I ++ K + Sbjct: 10 YKQYLIVEKGLSKNTIYSYLRD----LIAFSNFIGEEYEINQIENINKEHIHLYL-KELS 64 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + S+ R L ++ +L K I E+ + + K+ LP L++++ + ++D Sbjct: 65 KTNCTNSISRKLVSLRMLYIFLVKENIVKENLMSSFTLPKRDKKLPIILSQEEMIEILDG 124 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 +++ I +RN ++ LLY G+RISE L+LT +++ +++ GKG+K R++ Sbjct: 125 IIV-----CDAISSRNRCMVELLYATGMRISELLNLTLKDLNIKMGFIKVIGKGNKERMI 179 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 P+ V + + +Y + + N+ LF G+ L+ F ++ + + Sbjct: 180 PIGSYVGEILEQYINDYRAEFNIKNDSLLFFNKHGQRLSREEFYSILQTIVNSTSITKKV 239 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 + HT RH+FATHLL NG DLRSIQ +LGH +STT IYT+++++ + Y Q HP Sbjct: 240 SPHTFRHTFATHLLENGADLRSIQELLGHSDISTTTIYTHISNQK----IRSEYQQFHPR 295 Query: 321 ITQKD 325 I + + Sbjct: 296 IKKHN 300 >gi|296133056|ref|YP_003640303.1| tyrosine recombinase XerC [Thermincola sp. JR] gi|296031634|gb|ADG82402.1| tyrosine recombinase XerC [Thermincola potens JR] Length = 302 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 86/305 (28%), Positives = 163/305 (53%), Gaps = 16/305 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR--QLSYTEIRAFISK 77 +++ L++E+ S+ TLQSY+ D Q + F++ E IT + ++ ++ + IR F+++ Sbjct: 7 DFMVYLQVEKNASEKTLQSYQTDLFQMVDFIS--AEINITPENLQPDRVDHLVIRKFLAE 64 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 + + + ++ R L+ +++F ++L + ++ T + ++ + K LP+ L + L Sbjct: 65 LQRRGLSRSTIARKLAAMRTFFRFLCREEVITRNPLIEVATPKVEKRLPQFLYQDDIRNL 124 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 ++ +T R+ AIL LY G+R+SE ++L +I + +R+ GKG K Sbjct: 125 IEAPERNTPR-----GLRDRAILETLYASGIRVSELVNLDMTDIDLNTGYVRVMGKGAKE 179 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYL 254 R+VPL A+ Y L + P +F G+ ++ + + + R + Sbjct: 180 RVVPLGQFAINALKAYLTHGRTRLACRSKEPSEAVFLNKAGQRISVRSIRDIVNKYVRKI 239 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 + + H +RHSFATHLL G DLR++Q +LGH ++STTQIYT+V ++ + E+Y Sbjct: 240 SIRQRVSPHIIRHSFATHLLDAGADLRTVQELLGHVKMSTTQIYTHVTREH----LKEVY 295 Query: 315 DQTHP 319 + HP Sbjct: 296 KKAHP 300 >gi|118498126|ref|YP_899176.1| site-specific recombinase [Francisella tularensis subsp. novicida U112] gi|194323353|ref|ZP_03057137.1| tyrosine recombinase XerD [Francisella tularensis subsp. novicida FTE] gi|254373477|ref|ZP_04988965.1| site specific recombinase XerD [Francisella tularensis subsp. novicida GA99-3549] gi|118424032|gb|ABK90422.1| site-specific recombinase [Francisella novicida U112] gi|151571203|gb|EDN36857.1| site specific recombinase XerD [Francisella novicida GA99-3549] gi|194322717|gb|EDX20197.1| tyrosine recombinase XerD [Francisella tularensis subsp. novicida FTE] Length = 292 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 95/300 (31%), Positives = 147/300 (49%), Gaps = 18/300 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L NL +E GLS+ T+ SY D L FL Y + I L + ++ AFIS R Sbjct: 8 FLDNLWLEHGLSQNTISSYRTD----LKFLQNYFAKTDLIS----LDFEQLYAFISYRSK 59 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 RS R +S ++ F +L T + + K + LP+ + E Sbjct: 60 NGYSSRSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDV-----E 114 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LL T+ + R+ A+L L+Y GLR+SE + L +I + +++ GKG K RIV Sbjct: 115 RLLQAPDMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIV 174 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ + + +Y+ L+ N + +F K + F I+ G+ Sbjct: 175 PIGEYALEYLQKYFAEARTSLSKNFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTD 234 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLRS+Q +LGH +STT IYT+++ + EIY + HP Sbjct: 235 ISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR----LQEIYQKHHP 290 >gi|227833151|ref|YP_002834858.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975] gi|262182358|ref|ZP_06041779.1| site-specific tyrosine recombinase XerD [Corynebacterium aurimucosum ATCC 700975] gi|227454167|gb|ACP32920.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975] Length = 292 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 92/301 (30%), Positives = 150/301 (49%), Gaps = 17/301 (5%) Query: 24 NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83 +L +E+G SK T+ +Y D +++ +LA E IT +R+++ + ++ R + + Sbjct: 2 HLMVEKGASKNTVSNYRRDINRYVDWLA---ESGIT--DLRRVTRAHVENYLVFLR-ESL 55 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 S R+L + K+ + E + K++ +LP L+ + L++ + Sbjct: 56 AQSSASRALIVARGLHKFALAEGMIEEDVAAEVSPPKRAQALPETLSVQDVEALLNAI-- 113 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-----QSTLRIQGKGDKIR 198 T ID R+ A+L +LYG G RISE +SL+ ++ + + L + GKGDK R Sbjct: 114 PTDESATPIDIRDRALLEMLYGTGARISEVISLSVDDVTGEGPASVRDILVLSGKGDKQR 173 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +VPL A+ Y L LF RGK L+ I+ + L Sbjct: 174 LVPLGSHAVTAVENYLVRARPVLATGASHSLFLNTRGKALSRQSAWAAIKTAAQRAHLST 233 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + HTLRHSFATHLL G D+R++Q +LGH ++TTQIYT+V + D + E++ H Sbjct: 234 KISPHTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTA----DSLREVWRTAH 289 Query: 319 P 319 P Sbjct: 290 P 290 >gi|162452703|ref|YP_001615070.1| site-specific recombinase [Sorangium cellulosum 'So ce 56'] gi|161163285|emb|CAN94590.1| site-specific recombinase [Sorangium cellulosum 'So ce 56'] Length = 323 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 90/300 (30%), Positives = 146/300 (48%), Gaps = 16/300 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +L +ER L+ LTL++Y D + + E I T+ L + I ++ Sbjct: 37 YLDHLRVERALAPLTLEAYGHDLAKLVAH-----AEASGITTVEGLDQSLIGTYLVALGQ 91 Query: 81 QKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 I S R LS ++ F+++L ++R+I + L R + LP+ L+ + L++ Sbjct: 92 AGISASSAARHLSAVRGFVRFLLRERRIERDPCALVERP-RVGRRLPKVLSFDEIALLIE 150 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + + R+ A+L+++Y GLR+SE + L +I + + GKG K R+ Sbjct: 151 -----APEQGTFKGLRDRAMLHVMYAAGLRVSEVVRLKLADIDRRKGIVMALGKGGKRRL 205 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 VPL AI Y +L LF RG PL + + R +G+ Sbjct: 206 VPLGEPALAAIDAYLELRATHPRSAATQVLFLSPRGGPLTRQAVWKLLGGYARAVGIAKP 265 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 ++ H LRHSFATHLL G DLRS+Q++LGH + TT+IYT++ D + Y + HP Sbjct: 266 SSPHKLRHSFATHLLEGGADLRSVQALLGHANVVTTEIYTHLAD----DHVRAAYRRAHP 321 >gi|301154937|emb|CBW14400.1| site-specific tyrosine recombinase [Haemophilus parainfluenzae T3T1] Length = 297 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 92/295 (31%), Positives = 154/295 (52%), Gaps = 17/295 (5%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 IE+GLS+ T+QSY D +L ++ ++++T+ L +++ F+ R Q Sbjct: 16 IEKGLSENTVQSYRLDLTALCDWL---DKQNLSLETLEPL---DLQQFLGSRLEQGYKAT 69 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R LS ++ +YL + K T+ + + K + LP+ L E+Q L L+T Sbjct: 70 STARMLSAMRKLFQYLYREKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTDL-----LNTP 124 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 ++ R+ A+L LLY GLR++E ++LT +N+ Q +R+ GKG+K RIVP+ Sbjct: 125 DVEIPLELRDKAMLELLYATGLRVTELVTLTIENMNLQQGVVRVIGKGNKERIVPMGEEA 184 Query: 207 RKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHT 264 + ++ P LN +F R + + F I+ G+ + H Sbjct: 185 AFWVRQFVLYGRPILLNGQSSDVVFPSQRAQQMTRQTFWHRIKHYAILAGIDTDALSPHV 244 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LRH+FATHL+++G DLR +Q +LGH LSTTQIYT+V + + ++++ HP Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER----LKHLHERFHP 295 >gi|297571450|ref|YP_003697224.1| tyrosine recombinase XerD [Arcanobacterium haemolyticum DSM 20595] gi|296931797|gb|ADH92605.1| tyrosine recombinase XerD [Arcanobacterium haemolyticum DSM 20595] Length = 310 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 98/316 (31%), Positives = 154/316 (48%), Gaps = 25/316 (7%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE--EKITIQTIRQLSYTE 70 E + ++++ +L IER LS TL +Y D L Y E E ++ ++ +S + Sbjct: 6 EFDRALRDYVAHLGIERSLSDNTLGAYRRD-------LTHYKEHLELRSVASLAAISPED 58 Query: 71 IRAFISKRRTQKIGD----RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126 +F+ R G S+ R ++ ++ F ++L ITT ++ K LP Sbjct: 59 AASFVEYLRDGSAGSVMATSSVARMVTAVRRFHEFLLAEGITTTDASADLHPPKIGMRLP 118 Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 +A+ + ++ +L + I R+ A+L +LYG G RISE + LT ++ + + Sbjct: 119 KAITIPE----MEQLLAVVARGDDAISTRDRALLEILYGTGARISEVVGLTVDDMSCENA 174 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVF 243 T+R+ GKG K RI+PL +AI Y + +L P F RGK L+ Sbjct: 175 TIRLFGKGRKERILPLGTYAIEAIRAYLNHGRTELVARSAAPTSSFFLNKRGKTLSRQSA 234 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 I+ + GL + HT RHSFATHLL G D+R +Q +LGH ++TTQIYT V Sbjct: 235 WGVIQAVAEEAGLT-DISPHTFRHSFATHLLQGGADVRVVQEMLGHSSVTTTQIYTKVTR 293 Query: 304 KNGGDWMMEIYDQTHP 319 + + EIY HP Sbjct: 294 ET----LKEIYATAHP 305 >gi|261345596|ref|ZP_05973240.1| tyrosine recombinase XerD [Providencia rustigianii DSM 4541] gi|282566076|gb|EFB71611.1| tyrosine recombinase XerD [Providencia rustigianii DSM 4541] Length = 300 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 98/305 (32%), Positives = 155/305 (50%), Gaps = 21/305 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + +E+ L++ TL SY D + +L +Q+I ++++F+++R Sbjct: 11 EQFLDTIWLEQDLAENTLASYRNDLQSLDRWLDAQQLHLENVQSI------DLQSFLAER 64 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + KI + + K LP+ L+EKQ L+ Sbjct: 65 IDSGYKAASSARLLSAMRRLFQYLYREKIRLDDPSAVIAAPKIPQRLPKDLSEKQVEDLL 124 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + S ++ R+ A+L +LY CGLR+SE + LT +I Q +R+ GKGDK R Sbjct: 125 NAPATEDS-----LELRDKAMLEVLYACGLRVSELIGLTFSDISLRQGVIRVVGKGDKER 179 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQ---RYIRQLRRYL 254 ++PL + +Y + P LN LF RG + F +Y L Sbjct: 180 LIPLGEEAIYWVEKYLEYGRPDLLNGKASDVLFPSKRGTKMTRQTFWHRIKYYAVLANID 239 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G LS H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + ++ Sbjct: 240 GESLS--PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRTLH 293 Query: 315 DQTHP 319 +Q HP Sbjct: 294 EQHHP 298 >gi|300741394|ref|ZP_07071415.1| putative tyrosine recombinase XerC [Rothia dentocariosa M567] gi|300380579|gb|EFJ77141.1| putative tyrosine recombinase XerC [Rothia dentocariosa M567] Length = 339 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 92/299 (30%), Positives = 152/299 (50%), Gaps = 13/299 (4%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L E+ S+ T++SY D F F+ + I + ++ IR ++ ++ Sbjct: 48 LRYEKYRSEETIRSYISDLYGFFGFIG-----RRGISRVEDINLQLIREWLGSMHLKQNA 102 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 ++ R S +++F + + ++ TE+ M K+ LP L+++Q +++D V L Sbjct: 103 KTTVARRGSTLRTFFSWAHEEELITENPTRGMSTPKRDRHLPAVLSQEQMSSVLDTVALR 162 Query: 145 TSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 + I R A+L +LY G+RISE L +I T+R+ GKG+K R+VPL Sbjct: 163 CRENPQDIRMLRLWAVLEVLYSSGMRISELTGLNLSSIDRANKTVRVIGKGNKERVVPLG 222 Query: 204 PSVRKAILEYYDLC-PFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 K + ++ + P+ + + LF G RGK NP + I ++ R L + Sbjct: 223 TPAMKVLSQWVKIGRPYWIAKGSRDVTALFIGPRGKRANPRQIREDISRILRTLEDTEVS 282 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 AH LRHS ATHL+ G D+R++Q +LGH LSTTQIYT+V+ K + + Y + HP Sbjct: 283 GAHVLRHSAATHLVDGGADIRTVQELLGHASLSTTQIYTHVSMKR----LADTYTRAHP 337 >gi|163754938|ref|ZP_02162059.1| site-specific recombinase [Kordia algicida OT-1] gi|161325005|gb|EDP96333.1| site-specific recombinase [Kordia algicida OT-1] Length = 298 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 102/313 (32%), Positives = 159/313 (50%), Gaps = 31/313 (9%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF----YTEEKITIQTIRQLSYTE 70 L++ Q++L+ IERGLS+ T+ +Y D + + F+ ++ I T++Q Y E Sbjct: 7 LRDFQHFLR---IERGLSENTIVNYSHDIEKLIRFVENNAINHSPLSIDEATVQQFIY-E 62 Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 I + + RS R +SG+KSF YL ++ + K LP L Sbjct: 63 I--------AKVLNARSQTRIISGLKSFFNYLVFEDYRKDNPTELIEAPKIGRKLPDTLA 114 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 K L+ + L +K RN AI+ LYGCGLR+SE ++L ++ D+ +R+ Sbjct: 115 LKDIEKLIAAIDL-----SKNEGHRNKAIIETLYGCGLRVSELVNLKISDLFFDEGFIRV 169 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 GKGDK R VP+ +K I Y P+ + L R RGK L + Sbjct: 170 TGKGDKQRFVPISSITKKYINLYIQGQRQHVPYIPEFGDTVFLNR--RGKQLTRVMIFTI 227 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 +++L GL + + HT RHSFATHLL NG DLR+IQ +LGH ++TT+IY +V+ + Sbjct: 228 VKRLTEKSGLKKNISPHTFRHSFATHLLENGADLRAIQLMLGHESITTTEIYMHVDRSH- 286 Query: 307 GDWMMEIYDQTHP 319 + ++ ++ HP Sbjct: 287 ---LAKVMEKYHP 296 >gi|256851129|ref|ZP_05556518.1| tyrosine recombinase XerC [Lactobacillus jensenii 27-2-CHN] gi|260660553|ref|ZP_05861468.1| tyrosine recombinase XerC [Lactobacillus jensenii 115-3-CHN] gi|282932232|ref|ZP_06337676.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1] gi|297205994|ref|ZP_06923389.1| tyrosine recombinase XerC [Lactobacillus jensenii JV-V16] gi|256616191|gb|EEU21379.1| tyrosine recombinase XerC [Lactobacillus jensenii 27-2-CHN] gi|260548275|gb|EEX24250.1| tyrosine recombinase XerC [Lactobacillus jensenii 115-3-CHN] gi|281303627|gb|EFA95785.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1] gi|297149120|gb|EFH29418.1| tyrosine recombinase XerC [Lactobacillus jensenii JV-V16] Length = 302 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 91/279 (32%), Positives = 139/279 (49%), Gaps = 12/279 (4%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L ERG S LTL +Y D +Q F + Q+S ++ FI+ + + Sbjct: 14 LAYERGYSNLTLTAYINDLKQAEDFW----KNNGGFNGFEQVSSRDVEIFITSLASAGLS 69 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S R LS +KS K+L +R + + +KS LP E + ++D++ Sbjct: 70 QASQARKLSSLKSLYKFLTRRNLVAVDPTQTVSIHRKSKKLPEFFYEPEIKKVLDSL--- 126 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 S K+ RN A+ L Y G+R+SE +LT Q + D + + GKG+K R VP Sbjct: 127 -SASDKFT-VRNKAMFELFYATGMRVSEVSNLTLQQVDFDVQMILVHGKGNKDRYVPFGD 184 Query: 205 SVRKAILEYYDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 + ++L Y + F+ + N +F RG L + +R++ + GL + Sbjct: 185 YAKASLLRYLNEARSLFNPDENNHF-VFLDNRGHQLTSRGIEYIMRKVFQKGGLSANVHP 243 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 H LRH+FAT +L+NG DLRS+Q +LGH LSTTQIYT+V Sbjct: 244 HELRHTFATQMLNNGADLRSVQELLGHESLSTTQIYTHV 282 >gi|327312733|ref|YP_004328170.1| putative tyrosine recombinase XerD [Prevotella denticola F0289] gi|326945335|gb|AEA21220.1| putative tyrosine recombinase XerD [Prevotella denticola F0289] Length = 315 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 98/309 (31%), Positives = 154/309 (49%), Gaps = 24/309 (7%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L++E+G S TL +Y D + L +LA + +T T+ QL + F + IG Sbjct: 18 LKLEKGCSPNTLDAYLHDVDKLLRYLAG-EQVSVTDVTLEQLEH-----FAASVSDLGIG 71 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 RSL R LS ++ F ++L + + K+ + LP L+ + L V L Sbjct: 72 ARSLARILSSVRQFYRFLVLDGYMEADPTELLESPKQPDHLPEVLSTAEVDLLEQAVDL- 130 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 TKW RN AI+ +L+ CGLR+SE L ++ D+ +R+ GKG K R+VP+ P Sbjct: 131 ----TKWEGHRNRAIIEVLFSCGLRVSELTHLKLSDLYRDEQFVRVMGKGSKERLVPISP 186 Query: 205 SVRKAILEYYDLCPFDLNL-----NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 L+ D D N+ + +F RG L + I++ G+ + Sbjct: 187 RA----LDELDCWFADRNVMKIKSGEEDYVFLNRRGHHLTRTMILIMIKRYAVEAGIRKT 242 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRHSFAT LL G DLR+IQ++LGH + TT+IYT++++ ++E HP Sbjct: 243 ISPHTLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTHIDTSTLRQEILE----HHP 298 Query: 320 SITQKDKKN 328 + DK++ Sbjct: 299 RNIRYDKEH 307 >gi|89072532|ref|ZP_01159104.1| tyrosine recombinase [Photobacterium sp. SKA34] gi|89051636|gb|EAR57089.1| tyrosine recombinase [Photobacterium sp. SKA34] Length = 298 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 94/303 (31%), Positives = 152/303 (50%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + +ERGLS+ TL SY D + L +L + I++ S +++ + Sbjct: 9 ERFLDAMWMERGLSENTLSSYRNDLTKLLRWLKQESRNVISV------SVDDLQRYQQWL 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S R +S I+ +YL + K+ + + + K LP+ L+E Q Sbjct: 63 FDKDYKQTSRARMVSAIRRLFQYLHREKMRDDDPSVMLVTPKLPKRLPKDLSEAQV---- 118 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + LL I+ R+ A+L LLY GLR++E ++LT +NI Q +RI GKGDK R Sbjct: 119 -DALLEAPDVNDPIELRDKAMLELLYATGLRVTELVTLTMENISLRQGVVRITGKGDKER 177 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ + I ++ + P L LF R + + F I+ G+ Sbjct: 178 LVPMGENAVDWIEQFIETGRPQLLGEKSSDVLFPSRRARQMTRQTFWHRIKHYAVLAGID 237 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 T + H +RH+FATHLL+ G DLR +Q +LGH LSTTQIYT+V ++ + +++ Sbjct: 238 ADTLSPHVMRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQT 293 Query: 317 THP 319 HP Sbjct: 294 HHP 296 >gi|90413180|ref|ZP_01221176.1| tyrosine recombinase [Photobacterium profundum 3TCK] gi|90325871|gb|EAS42323.1| tyrosine recombinase [Photobacterium profundum 3TCK] Length = 298 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 98/305 (32%), Positives = 153/305 (50%), Gaps = 17/305 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + +ERGLS+ TL SY D L L ++E+K + LS +++ + Sbjct: 9 ERFLDAMWMERGLSENTLMSYRND----LTKLRKWSEDKNY--RLVTLSSDDLQRYQQWL 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R +S I+ +YL + K+ + M + + LP+ L E+Q L+ Sbjct: 63 FDADFKQTSRARMVSAIRRLFQYLYREKMRDDDPSSMMVSPRLPKRLPKDLTEEQVGALL 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D I+ R+ A+L LLY GLR++E +SLT +N+ Q +R+ GKGDK R Sbjct: 123 D-----APDTNNPIELRDKAMLELLYATGLRVTELVSLTMENVSLRQGVVRVMGKGDKER 177 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ S I E+ D P L LF R + + F I+ G+ Sbjct: 178 LVPMGESAIDWIEEFIDSGRPQLLGEKSSDVLFPSKRARQMTRQTFWHRIKHYAVIAGID 237 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 T + H +RH+FATHLL+ G DLR +Q +LGH LSTTQIYT+V ++ + +++ Sbjct: 238 TDTLSPHVMRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHAT 293 Query: 317 THPSI 321 HP + Sbjct: 294 HHPRV 298 >gi|292487142|ref|YP_003530012.1| tyrosine recombinase xerD [Erwinia amylovora CFBP1430] gi|292900477|ref|YP_003539846.1| integrase/recombinase [Erwinia amylovora ATCC 49946] gi|291200325|emb|CBJ47453.1| integrase/recombinase [Erwinia amylovora ATCC 49946] gi|291552559|emb|CBA19604.1| Tyrosine recombinase xerD [Erwinia amylovora CFBP1430] gi|312171246|emb|CBX79505.1| Tyrosine recombinase xerD [Erwinia amylovora ATCC BAA-2158] Length = 297 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 94/303 (31%), Positives = 151/303 (49%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L IER L++ T+ SY D R +LA + ++ ++ F+++R Sbjct: 8 EQFLDALWIERNLAQNTVDSYRLDLRSLGDWLAHQQLSLLNVEV------ANLQEFLAQR 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K+ + + + K LP+ L+E Q L+ Sbjct: 62 LEGGYKASSSARLLSAMRRLFQYLYREKLRDDDPSALLSSPKLPQRLPKDLSEAQVERLL 121 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L I+ R+ A+L LLY GLR++E + LT +I Q +R+ GKG+K R Sbjct: 122 QAPCLDLP-----IELRDKAMLELLYATGLRVTELVGLTLSDISLRQGVVRVMGKGNKER 176 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ I ++ + P+ LN LF R K + F I+ G+ Sbjct: 177 LVPMGEEAVHWIEQFIEYGRPWLLNGQTIDVLFPSNRAKQMTRQTFWHRIKHYATLAGID 236 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Q Sbjct: 237 SEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQ 292 Query: 317 THP 319 HP Sbjct: 293 HHP 295 >gi|332290936|ref|YP_004429545.1| tyrosine recombinase XerD [Krokinobacter diaphorus 4H-3-7-5] gi|332169022|gb|AEE18277.1| tyrosine recombinase XerD [Krokinobacter diaphorus 4H-3-7-5] Length = 300 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 96/307 (31%), Positives = 155/307 (50%), Gaps = 26/307 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 N+ L IERGLS+ T+ +Y D ++ L + E+ + ++ +I+ FI Sbjct: 9 NYKSYLRIERGLSENTIDNYARDLKK----LTRHLEQLDSAPDPITITKDDIQDFIYTI- 63 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 +++ RS R +SG+K F YL ++ + + + + LP L E++ L+ Sbjct: 64 AKEVQARSQARIISGLKGFFNYLIFEDYRKDNPLDLIESPRLGRKLPDTLAEEEIDALIT 123 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + L RN A+L LY CGLR++E +SL ++ ++ + + GKGDK R Sbjct: 124 AIDLSNPQ-----GERNRAMLETLYSCGLRVTELISLKLSDLYFEEGFINVIGKGDKQRF 178 Query: 200 VPLLPSVRKAILEY-------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 VP+ +K I Y D+ P +++ LF RG+ L + I+ L Sbjct: 179 VPISEHTQKYINIYRNEIRTHTDVKPEYVDI-----LFLNRRGRQLTRAMIFTIIKDLAV 233 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 G+ S + HT RHSFATHLL NG DLRSIQ +LGH ++TT+IY +V+ + + Sbjct: 234 KAGIKKSISPHTFRHSFATHLLQNGADLRSIQQMLGHESITTTEIYMHVDRSD----LAR 289 Query: 313 IYDQTHP 319 + +Q HP Sbjct: 290 VMEQYHP 296 >gi|291618684|ref|YP_003521426.1| XerD [Pantoea ananatis LMG 20103] gi|291153714|gb|ADD78298.1| XerD [Pantoea ananatis LMG 20103] Length = 297 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 103/306 (33%), Positives = 158/306 (51%), Gaps = 23/306 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L IER L++ TL SY D + +LA + +T+ T LS +++ F+++R Sbjct: 8 EQFLDALWIERNLAQNTLSSYRQDLQTLTGWLAHH---GLTLTT---LSAPDLQQFLAER 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K+ T+ + K LP+ L+E Q V Sbjct: 62 LEGGYKASSSARLLSAMRRLFQYLYREKMRTDDPSAMLAAPKLPQRLPKDLSEAQ----V 117 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D LL ++ R+ A+L LLY GLR+SE + LT ++ Q +R+ GKG+K R Sbjct: 118 DR-LLQAPDVNVPLELRDKAMLELLYATGLRVSELVGLTLNDVSLRQGVVRVIGKGNKER 176 Query: 199 IVPLLPSVRKAI--LEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 +VPL +A+ LEYY P+ LN F R + + F I+ Sbjct: 177 LVPL---GEEAVHWLEYYMEHGRPWLLNGQTLDVFFPSNRAQQMTRQTFWHRIKHYAMLA 233 Query: 255 GLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + + Sbjct: 234 GIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRLL 289 Query: 314 YDQTHP 319 + Q HP Sbjct: 290 HQQHHP 295 >gi|116328373|ref|YP_798093.1| site-specific recombinase XerD [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331099|ref|YP_800817.1| site-specific recombinase XerD [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121117|gb|ABJ79160.1| Site-specific recombinase XerD [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124788|gb|ABJ76059.1| Site-specific recombinase XerD [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 298 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 93/302 (30%), Positives = 150/302 (49%), Gaps = 16/302 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 QN+ + L +E+GLS ++ SY D +F FL EK I ++ + +I F+++ Sbjct: 10 QNFQEYLSVEKGLSDNSIYSYGYDLNKFKNFL-----EKEHIDFLK-VQANDIMRFLNEE 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R +KI +++ R + I+ F K+LK K + + + ++P L + + L Sbjct: 64 RDRKISSKTIAREVVAIRQFYKFLKDEKKLDTNPTEKIETPEVMRNIPDYLTQDEIEELF 123 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 ++ E + R+ I LLY GLRISEA +L ++ + L ++GKG + R Sbjct: 124 ASI-----REDNLYELRDKCIFELLYSSGLRISEACNLRLSDMDLEGMILTVEGKGGRQR 178 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP + Y PF L LF +G +N R + + + Sbjct: 179 LVPFGEKSLDIMNRYLKQSRPFILKARNCEYLFVSKKGSYINRKSVWRLLNHYIKRTSIS 238 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T HTLRHSFATHLL N DL+S+Q +LGH +STTQIYT++ +K + E++ + Sbjct: 239 KKVTPHTLRHSFATHLLENHADLKSVQELLGHIDISTTQIYTHMANKT----LKEVHKKF 294 Query: 318 HP 319 HP Sbjct: 295 HP 296 >gi|81428597|ref|YP_395597.1| site-specific DNA-tyrosine recombinase, XerC [Lactobacillus sakei subsp. sakei 23K] gi|78610239|emb|CAI55288.1| Site-specific DNA-tyrosine recombinase, XerC [Lactobacillus sakei subsp. sakei 23K] Length = 303 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 88/294 (29%), Positives = 147/294 (50%), Gaps = 16/294 (5%) Query: 19 QNW----LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 Q+W LQ L ++R S T ++Y+ D + F+ FLA + + +Q+ E++ + Sbjct: 5 QDWINLFLQYLIVDRHYSPETQKAYQADIKAFVDFLA----ANGGLTSFKQVGTLEVQTY 60 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 +++ +K ++ R +S ++SF +YL + + ++ K+ + LPR EK+ Sbjct: 61 LNEMDQKKYSGETIARRISSLRSFYRYLIRNEFLQTDPFETVQLKKQRHKLPRFFYEKEM 120 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 L ++ + + RN AIL LLY G+R+SE LT I + + GKG Sbjct: 121 DALFAAIV-----GQEPLTQRNRAILELLYATGMRVSECAQLTIGQIDFGLRVILVHGKG 175 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLR 251 +K R VP KA+ +Y + L Q +F G P+ + + Q+ Sbjct: 176 NKDRYVPFGNHATKALQDYLNDGRVQLMAKRQQEHDVVFVNHLGNPITSRGIEYALDQVD 235 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + L H +RH+FATHLL +G DLR++Q +LGH LSTTQIYT+V + + Sbjct: 236 KKTCLTSGIHPHMIRHTFATHLLDHGADLRTVQELLGHSSLSTTQIYTHVTTAH 289 >gi|302389650|ref|YP_003825471.1| tyrosine recombinase XerC [Thermosediminibacter oceani DSM 16646] gi|302200278|gb|ADL07848.1| tyrosine recombinase XerC [Thermosediminibacter oceani DSM 16646] Length = 298 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 90/302 (29%), Positives = 156/302 (51%), Gaps = 15/302 (4%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISKR 78 ++L + + S TL++Y D QF+ +L + KI+ +T+ +++ +IR F++ Sbjct: 8 SFLTYISAAKNQSPNTLKAYANDLGQFIEYLE---QNKISKTKTLNDITHLDIRGFLAYL 64 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + +++ R LS I+SF +YL + +E ++ +K LP L + L+ Sbjct: 65 KESGASKKTIARKLSAIRSFFRYLSTEGLVSEDPTKMVQGMKLPKKLPLFLYPAEIEALL 124 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 ++ + R+ AI+ LLY G+R+SE +SL +++ + + + GKG K R Sbjct: 125 ------SAPGQDVLGIRDRAIMELLYATGMRVSELVSLKLKDVNLGANFIIVFGKGSKER 178 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +V +++ EY L N+ LF G L +R I + + L L Sbjct: 179 VVFFGSKAAESLEEYLRKSRPYLVKNLTCDYLFLNKNGTRLTDRSVRRIIDKYVKLLSLN 238 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + HTLRH+FATH+L+NG DL+++Q +LGH LSTTQIYT+V + + E+YD+ Sbjct: 239 AKISPHTLRHTFATHMLNNGADLKTVQELLGHVSLSTTQIYTHVTK----ERLKEVYDKA 294 Query: 318 HP 319 P Sbjct: 295 FP 296 >gi|120600077|ref|YP_964651.1| tyrosine recombinase XerD [Shewanella sp. W3-18-1] gi|146291994|ref|YP_001182418.1| tyrosine recombinase XerD [Shewanella putrefaciens CN-32] gi|120560170|gb|ABM26097.1| tyrosine recombinase XerD [Shewanella sp. W3-18-1] gi|145563684|gb|ABP74619.1| tyrosine recombinase XerD [Shewanella putrefaciens CN-32] Length = 300 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 98/300 (32%), Positives = 151/300 (50%), Gaps = 16/300 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +L +GLS TL +Y D R F ++ T+ + + ++R++++ R Sbjct: 14 FLDDLWSSKGLSDNTLSAYRTDLRHF------DRHQQRHGTTLLEATAADVRSYLALRLE 67 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q S R LS ++ F YL K + + + K + LP +L+E Q VD Sbjct: 68 QHFARTSSARLLSSLRRFYTYLLLTKQIAVDPMALIESPKLTRHLPHSLSESQ----VDR 123 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LL + ++ R+ A+L LLY GLR+SE + LT + + Q +RI GKG K R+V Sbjct: 124 -LLSEPNVDDPVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLV 182 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 PL + Y +L + Q + F RG+ + F I+ G+ + Sbjct: 183 PLGELAVTEVEAYLKFARQELLGHKQSDVVFPSNRGQMMTRQTFWHRIKLYALRAGIETA 242 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + E++ Q HP Sbjct: 243 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARAR----LQELHQQHHP 298 >gi|23465930|ref|NP_696533.1| integrase/recombinase [Bifidobacterium longum NCC2705] gi|34222807|sp|Q7ZAP1|XERD_BIFLO RecName: Full=Tyrosine recombinase xerD gi|23326639|gb|AAN25169.1| probable integrase/recombinase [Bifidobacterium longum NCC2705] Length = 308 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 88/307 (28%), Positives = 151/307 (49%), Gaps = 17/307 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L ++ +ERGL+ T+ +YE D +++ +L E I ++ ++ +I+ Sbjct: 10 EQFLIHIGVERGLATATVTAYESDIAKYIDWL-----ETRGIHEPDAITKQDVEDYIAAL 64 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 RS R L+ I F ++ + T ++ K +++LP L + L+ Sbjct: 65 DQAGESARSKARRLASIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLL 124 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + S T + R+ A+L +Y G R+SEA +I D+ R+ GKG K R Sbjct: 125 DAAAVGGS--TDPVVLRDKALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQR 182 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNL--NIQLP----LFRGIRGKPLNPGVFQRYIRQLRR 252 +VPL +AI Y + +L + ++P LF RGK ++ ++ Sbjct: 183 LVPLGSYACRAITAYLNAGRGELEQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGE 242 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 G+ HTLRHSFATHL+ G D+R++Q +LGH ++TTQIYT+V+ + ++E Sbjct: 243 RAGITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPET----LIE 298 Query: 313 IYDQTHP 319 Y +HP Sbjct: 299 TYLTSHP 305 >gi|71734696|ref|YP_277090.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. phaseolicola 1448A] gi|123761139|sp|Q48C04|XERC_PSE14 RecName: Full=Tyrosine recombinase xerC gi|71555249|gb|AAZ34460.1| tyrosine recombinase XerC [Pseudomonas syringae pv. phaseolicola 1448A] Length = 299 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 96/306 (31%), Positives = 150/306 (49%), Gaps = 21/306 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 + +L ER +S TL++Y D + L + +K + L +R+F +++ Sbjct: 8 YCMHLRSERQVSPHTLEAYRRDLSKVLAYC-----QKAQRSSWNDLDIQHLRSFTARQHQ 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q RSL R LS ++ F KYL + I + K LP+ L+ + L+D Sbjct: 63 QGQSSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRTAQLLDG 122 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + E ++ R+ AIL LLY GLR+SE L + +++ GKG K R++ Sbjct: 123 GV-----EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVL 177 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPL 258 P+ R+A LE + P N Q +F +GK L P Q ++ R LG L Sbjct: 178 PVGSKARQA-LEIW--LPLRALTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGERELGQNL 234 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 H LRHSFA+HLL + DLR++Q +LGH + TTQIYT+++ ++ + +YD H Sbjct: 235 HP--HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LATVYDSAH 288 Query: 319 PSITQK 324 P +K Sbjct: 289 PRAKRK 294 >gi|320527482|ref|ZP_08028663.1| putative site-specific tyrosine recombinase XerC [Solobacterium moorei F0204] gi|320132195|gb|EFW24744.1| putative site-specific tyrosine recombinase XerC [Solobacterium moorei F0204] Length = 307 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 92/306 (30%), Positives = 146/306 (47%), Gaps = 21/306 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ + R SK T +Y D +FL +L + I + ++ T++ +I++ R Sbjct: 10 FLRQIARVRTGSKDTENAYRRDVERFLEYLREHR-----IDSFEHVTKTDVSDYITQLRD 64 Query: 81 QKIGDRSLK-----RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 +IG + L R+LS +KSF +YL + + + + + LP L Q Sbjct: 65 GEIGGKPLSNSSYARNLSSLKSFYRYLNRFEGIKANPVRIFKGGSIRRKLPEFLTFDQME 124 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 T+++ LH + RN I+ ++Y CGLR+SE L +I + L + GK Sbjct: 125 TMLNQFDLHDP-----VQIRNRCIIEVMYACGLRVSECAGLKISSINLVEGFLTVLGKES 179 Query: 196 KIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 K R+VP P ++ I Y + F LF G+P++ Q + Sbjct: 180 KERMVPFYPRCKQLIQYYMNNARGTFMEKTQEHDILFVNQNGRPISARSIQLICEKAGED 239 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 LP+ H +RHSFATH+L NG DLR +Q +LGH L TTQIYT+V D + ++ Sbjct: 240 ANLPIHIHPHMIRHSFATHMLDNGADLRIVQELLGHENLGTTQIYTHVTQ----DRLRKV 295 Query: 314 YDQTHP 319 D+ HP Sbjct: 296 VDEAHP 301 >gi|308271353|emb|CBX27961.1| Tyrosine recombinase xerC [uncultured Desulfobacterium sp.] Length = 310 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 95/311 (30%), Positives = 153/311 (49%), Gaps = 25/311 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT------EEKITIQTIRQLSYTEIRA 73 ++++ L E+G S T ++Y D +F + A + E +I+ + +Y IRA Sbjct: 12 SFIETLASEKGYSVNTCRAYANDLYEFSSYAAEKSGQDSDEESEISTFMVEDANYLLIRA 71 Query: 74 ---FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 F+ K+ +K S+ R LS ++SF K+L +R I +++ + + K+ ++P L Sbjct: 72 YLGFLHKKNKKK----SIIRKLSALRSFFKHLVRRNIISDNPLELISTPKQDKNIPAYLT 127 Query: 131 EKQALTLVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 + L+D++ +T + RN AI +Y G+R+SE L ++ ++ Sbjct: 128 VDEMFRLLDSI------KTDTVSGLRNRAIFETMYSSGIRVSELAGLNVSSVDFGAGLIK 181 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIR 248 + GKG K RIVP+ I Y D L+ + PLF L R + Sbjct: 182 VFGKGGKERIVPIGSKAMDTIKSYRQKIQGDNILSDKNSPLFLNKNKGRLTTRSIARVLE 241 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 + + + + H LRHSFATH+L G DLR +Q +LGH LSTTQ YT+V G D Sbjct: 242 KFVSEFCISVPVSPHALRHSFATHMLDAGADLRVVQELLGHKSLSTTQRYTHV----GID 297 Query: 309 WMMEIYDQTHP 319 +ME YD+ HP Sbjct: 298 RLMETYDKAHP 308 >gi|226525271|gb|ACO70871.1| integrase family protein [uncultured Verrucomicrobia bacterium] Length = 294 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 98/308 (31%), Positives = 154/308 (50%), Gaps = 29/308 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L +LE ER +S TL +Y+ +F + + +T R+ + + +SK Sbjct: 7 EGFLHHLENERNVSPRTLTNYQHALSEFRKAMPDANWKTLTADHFRRYLFAMAKREMSKP 66 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK-SNSLPRALNEKQALTL 137 TQ++ + +++F KYL +R E+N L L K LP L KQ + L Sbjct: 67 -TQRL-------HFAALRTFYKYLVERH-GLETNPLKQVQLPKLDRKLPVVLTAKQVVEL 117 Query: 138 VDNVLLHTSHETK--WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 ++ L + W+ R++AI+ L Y GLR++E + L ++ ++R+ GKG Sbjct: 118 LEAPLKVDKQKQAPVWMPFRDAAIMELFYSSGLRLAELVGLNVADLDVYTESVRVIGKGR 177 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG----VFQRYIRQLR 251 K R+VP+ A+ +Y + PLF L P V QRY+ Sbjct: 178 KERVVPVGQPALLAVQKYRQEAKVHVG-----PLFISKLRTRLTPMRVWLVIQRYLP--- 229 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 + +P++ T H LRHSFATHLL +G DLR++QS+LGH LSTTQIYT+V ++ + Sbjct: 230 -HTSIPVNVTPHKLRHSFATHLLDHGADLRAVQSLLGHASLSTTQIYTHVTTER----LK 284 Query: 312 EIYDQTHP 319 YD HP Sbjct: 285 RAYDDAHP 292 >gi|302189430|ref|ZP_07266103.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. syringae 642] Length = 299 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 95/313 (30%), Positives = 148/313 (47%), Gaps = 41/313 (13%) Query: 24 NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83 +L ER +S TL++Y D + L + +K + + L +R+F +++ Q Sbjct: 11 HLRSERQVSPHTLEAYRRDLGKVLAYC-----QKAQLSSWSDLDIQHLRSFTARQHQQGQ 65 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 RSL R LS ++ F KYL + I + K LP+ L+ + L+D + Sbjct: 66 SSRSLARMLSAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGV- 124 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 E ++ R+ AIL LLY GLR+SE L + +++ GKG K R++P+ Sbjct: 125 ----EDDFLAHRDQAILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVG 180 Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPL-----------FRGIRGKPLNPGVFQRYIRQL-R 251 R+A L + LPL F +GK L P Q ++ Sbjct: 181 SKARQA-------------LEVWLPLRALTNPRDDAVFVSQQGKRLGPRAIQVRLKAAGE 227 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 R LG L H LRHSFA+HLL + DLR++Q +LGH + TTQIYT+++ ++ + Sbjct: 228 RELGQNLHP--HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQH----LA 281 Query: 312 EIYDQTHPSITQK 324 +YD HP +K Sbjct: 282 TVYDSAHPRAKRK 294 >gi|242240703|ref|YP_002988884.1| tyrosine recombinase XerD [Dickeya dadantii Ech703] gi|242132760|gb|ACS87062.1| tyrosine recombinase XerD [Dickeya dadantii Ech703] Length = 299 Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 90/303 (29%), Positives = 154/303 (50%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + +ER L++ TLQSY D R +LA + ++ ++++F+++R Sbjct: 10 EQFLDAVWLERNLAENTLQSYRRDLRTLAAWLAHHHA------SLSDARPDDLQSFLAER 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K+ + + + K LP+ L E Q Sbjct: 64 VDGGYKATSSARLLSAMRRLFQYLYREKVRPDDPSAVLSSPKLPQRLPKDLTEAQV---- 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL + ++ R+ A+L +LY GLR+SE + LT ++ Q +R+ GKG+K R Sbjct: 120 -ESLLAAPATDQPLELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVIGKGNKER 178 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL + +Y + P+ L+ +F RG+ + F I+ + Sbjct: 179 LVPLGEEAVYWVEQYLEYGRPWLLDGQTLDVMFPSTRGRQMTRQTFWHRIKHYAVLASID 238 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Q Sbjct: 239 SARLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQQ 294 Query: 317 THP 319 HP Sbjct: 295 HHP 297 >gi|213691797|ref|YP_002322383.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523258|gb|ACJ52005.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457891|dbj|BAJ68512.1| recombinase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 308 Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 88/307 (28%), Positives = 150/307 (48%), Gaps = 17/307 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L ++ +ERGL+ T+ +YE D +++ +L E I ++ ++ +I+ Sbjct: 10 EQFLVHIGVERGLATATVTAYESDIAKYIDWL-----ETRGIHEPDAITKQDVEDYIAAL 64 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 RS R L+ I F ++ + T ++ K +++LP L + L+ Sbjct: 65 DQAGESARSKARRLASIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLL 124 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + S T + R+ A+L +Y G R+SEA +I D+ R+ GKG K R Sbjct: 125 DTAAVGGS--TDPVVLRDKALLEFMYATGCRVSEATGTNLDDIDLDEHIARLMGKGSKQR 182 Query: 199 IVPLLPSVRKAILEYYDLCPFDLN--LNIQLP----LFRGIRGKPLNPGVFQRYIRQLRR 252 +VPL +AI Y + +L + ++P LF RGK ++ ++ Sbjct: 183 LVPLGSYACRAITAYLNAGRGELERRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGE 242 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 G+ HTLRHSFATHL+ G D+R++Q +LGH ++TTQIYT+V+ + ++E Sbjct: 243 RAGITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPEA----LIE 298 Query: 313 IYDQTHP 319 Y HP Sbjct: 299 TYLTAHP 305 >gi|296454370|ref|YP_003661513.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. longum JDM301] gi|296183801|gb|ADH00683.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. longum JDM301] Length = 308 Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 88/307 (28%), Positives = 150/307 (48%), Gaps = 17/307 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L ++ +ERGL+ T+ +YE D +++ +L E I ++ ++ +I+ Sbjct: 10 EQFLIHIGVERGLATATVTAYESDIAKYIDWL-----ETRGIHEPDAITKQDVEDYIAAL 64 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 RS R L+ I F ++ + T ++ K +++LP L + L+ Sbjct: 65 DQAGESARSKARRLASIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLL 124 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + S T + R+ A+L +Y G R+SEA +I D+ R+ GKG K R Sbjct: 125 DTAAVGGS--TDPVVLRDKALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQR 182 Query: 199 IVPLLPSVRKAILEYYDLCPFDLN--LNIQLP----LFRGIRGKPLNPGVFQRYIRQLRR 252 +VPL +AI Y + +L + ++P LF RGK ++ ++ Sbjct: 183 LVPLGSYACRAITAYLNAGRGELERRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGE 242 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 G+ HTLRHSFATHL+ G D+R++Q +LGH ++TTQIYT+V+ + ++E Sbjct: 243 RAGITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPET----LIE 298 Query: 313 IYDQTHP 319 Y HP Sbjct: 299 TYLTAHP 305 >gi|149910171|ref|ZP_01898817.1| tyrosine recombinase [Moritella sp. PE36] gi|149806757|gb|EDM66721.1| tyrosine recombinase [Moritella sp. PE36] Length = 296 Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 92/296 (31%), Positives = 147/296 (49%), Gaps = 22/296 (7%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87 ERGLS TL SY D Q+ +L + ++ +T+ + EI+AF++ R S Sbjct: 17 ERGLSDNTLSSYRNDLNQYHHWLVQHKQQLLTVDRL------EIQAFMASRFDLGYKASS 70 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 R LS I+ F +YL + ++ + + + K LP L+E + N LL Sbjct: 71 TARQLSAIRRFYQYLYREQMRDDDPTALLISPKLPQRLPDDLSEAEV-----NALLAAPE 125 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV- 206 I R+ A++ +LY GLR+SE + L+ +++ Q +R+ GKG K R+VP+ Sbjct: 126 LDDPIQLRDKAMMEVLYATGLRVSELVGLSMESVSLRQGLVRVTGKGGKERLVPMGEEAV 185 Query: 207 ---RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 + I E L ++ P RG + F ++ + G+ + H Sbjct: 186 YWTERFIAEGRATLLKGLTSDVVFP---SRRGNFMTRQTFWHRLKHYSQVAGITTHLSPH 242 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 TLRH+FATHLL+ G DLR +Q +LGH LSTTQIYT+V + + +++ + HP Sbjct: 243 TLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATAR----LEQLHSEHHP 294 >gi|332799166|ref|YP_004460665.1| Tyrosine recombinase xerC [Tepidanaerobacter sp. Re1] gi|332696901|gb|AEE91358.1| Tyrosine recombinase xerC [Tepidanaerobacter sp. Re1] Length = 300 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 91/304 (29%), Positives = 157/304 (51%), Gaps = 20/304 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +++ L + S+ T+++Y D QFL +L ++K++ + ++ IR F++ + Sbjct: 8 SFIDYLRATKTASQNTIKAYSEDLSQFLEYLK---QKKLSEPILVNATHLHIRGFLAYLQ 64 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 +KI R+ R LS ++SF KYL E+ ++ K S LP L + L+ Sbjct: 65 EKKISKRTAARKLSALRSFYKYLVVEGFVQENIAKSISTPKTSKKLPLFLYPGEIEVLL- 123 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 ++ + + R+ AI+ LLY G+R+ E + L +I + + + GKG K R+ Sbjct: 124 -----SAPKNDVLGIRDKAIMELLYATGMRVGELVLLKTSDINFGSNYIIVFGKGSKERV 178 Query: 200 VPLLPSVRKAILEYYDLC-PF---DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 V +++ +Y PF D+N + LF G ++ +R I + + Sbjct: 179 VFFGQKAEESLEKYLKESRPFLTKDINCD---SLFLNKNGTAISARSIRRIIDKYVKIAT 235 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 L + HTLRH+FATH+L+NG DL+++Q +LGH LSTTQIYT+V + + E+YD Sbjct: 236 LNSEVSPHTLRHTFATHMLNNGADLKTVQELLGHSSLSTTQIYTHVTK----ERLKEVYD 291 Query: 316 QTHP 319 +T P Sbjct: 292 KTFP 295 >gi|323701841|ref|ZP_08113511.1| tyrosine recombinase XerC [Desulfotomaculum nigrificans DSM 574] gi|323533145|gb|EGB23014.1| tyrosine recombinase XerC [Desulfotomaculum nigrificans DSM 574] Length = 300 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 88/302 (29%), Positives = 158/302 (52%), Gaps = 14/302 (4%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR--QLSYTEIRAFISK 77 +++ L++++ S T+++Y+ D + + F F T + + + Q+ R F+S Sbjct: 7 HFINFLKVQKNFSDHTIEAYQKDLFEGIDF--FSTVLNVCDEKLHPSQIDSRLFRNFLSH 64 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 + + + ++ R L+ ++F ++L + + + +L M N K+ LP+ L + +A L Sbjct: 65 MQERNLQRSTIARRLAAWRTFFRFLYREGLVQTNPLLRMANPKQEKRLPKFLYQDEAKEL 124 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 V+ S + R+ ++L LLY G+R+SE ++L ++ + LR+ GKG K Sbjct: 125 VE------SPGNTPLGVRDRSLLELLYATGIRVSELVALDLYHLDLSRGYLRVWGKGSKE 178 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 R+VP+ A+ Y L +F +G L+ ++ I + + +GL Sbjct: 179 RLVPIHDRAVAALKRYLTEARPKLAQPDCPAVFVNYKGSRLSDRGVRKLIDKYCQQVGLT 238 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + + H +RHSFATHLL NG DLRS+Q +LGH LSTTQIYT+V + + +IY + Sbjct: 239 KNISPHVIRHSFATHLLDNGADLRSVQELLGHVSLSTTQIYTHVTKQK----LKKIYHLS 294 Query: 318 HP 319 HP Sbjct: 295 HP 296 >gi|218258194|ref|ZP_03474596.1| hypothetical protein PRABACTJOHN_00250 [Parabacteroides johnsonii DSM 18315] gi|218225689|gb|EEC98339.1| hypothetical protein PRABACTJOHN_00250 [Parabacteroides johnsonii DSM 18315] Length = 301 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 93/297 (31%), Positives = 158/297 (53%), Gaps = 14/297 (4%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E+ LS ++ +Y D + F+ +E K ++Y +++ F+++ I Sbjct: 15 LRLEKALSANSIDAYLTDLDKLTNFVE--SEGK----KYADVTYDDLQQFVARLHDIGIH 68 Query: 85 DRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 RS R +SGIKSF ++L ITT+ L + + K LP L + +++D + L Sbjct: 69 PRSQARIISGIKSFYRFLFLDNYITTDPTEL-LESPKIGLKLPEVLTVNEINSILDTIDL 127 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 T RN A+L +LY CGLR+SE +SL ++ D+ ++++GKG K R+VP+ Sbjct: 128 -----TLPEGQRNRAMLEVLYSCGLRVSELVSLRFTDVYFDEGFIKVEGKGSKQRLVPIS 182 Query: 204 PSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 + K I Y YD + + LF RG L+ + I+Q G+ + + Sbjct: 183 ETAIKEIKNYLYDRNHVPVKKGFEDILFLSRRGTALSRIMVFHIIKQQTEMAGIKKNVSP 242 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HT RHSFATHLL G +L +IQ +LGH +++TT+IYT+++ + ++E + ++ P Sbjct: 243 HTFRHSFATHLLEGGANLLAIQEMLGHEKITTTEIYTHIDRQFLRKEILEHHPRSKP 299 >gi|172040772|ref|YP_001800486.1| integrase/recombinase [Corynebacterium urealyticum DSM 7109] gi|171852076|emb|CAQ05052.1| integrase/recombinase [Corynebacterium urealyticum DSM 7109] Length = 303 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 83/306 (27%), Positives = 152/306 (49%), Gaps = 16/306 (5%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 L+ R+ WL++L +ER LS+ TL SY DT ++L +L +++ +L+ +I +F Sbjct: 10 LQHRERWLRHLRLERNLSRNTLDSYRRDTDRYLAWLG--------ARSVTELNTGDIESF 61 Query: 75 ISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 ++ + + + + R L+ +++F ++L +T ++ ++ S+P+AL+ + Sbjct: 62 MASLAKGEGLAASTRARILAAVRNFHRFLTGEGVTEGDVADDVARPGQAASIPKALSIAE 121 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 ++++ I R+ A+L +LY G R+SE L L ++ + + ++GK Sbjct: 122 VTAILESC--PNDDAASLIQIRDRALLEMLYSTGARVSELLGLDVDDVDPTEKLIIVRGK 179 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 G K R+VP+ A+ Y N LF G + + + Sbjct: 180 GSKERVVPVGDPALDALQHYLVRVRPAFNKKGSAALFLNRNGGRMGRQSAFNMVSSVSEK 239 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ + H+ RHSFATHLL G D+R +Q +LGH + TTQIYT V+ D + E Sbjct: 240 AGVA-GVSPHSFRHSFATHLLEGGADIRVVQELLGHSNVVTTQIYTKVSP----DHLREA 294 Query: 314 YDQTHP 319 + ++HP Sbjct: 295 WSESHP 300 >gi|50954349|ref|YP_061637.1| site-specific tyrosine recombinase XerD [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950831|gb|AAT88532.1| integrase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 301 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 97/304 (31%), Positives = 153/304 (50%), Gaps = 20/304 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI---SK 77 +L+++ IERGLS T+ +Y R ++ + E++T QT ++ + A++ + Sbjct: 10 YLRHVAIERGLSANTVAAYR---RDLAVYAGWLAVEQVT-QTA-AVTPATVSAYLQHLAT 64 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 R + SL R LS ++SF ++L + T ++R K + LP+A+ Q Sbjct: 65 RGESPLTASSLARMLSTVRSFHRFLLEEGRVTVDAAHDIRPPKLPSRLPKAIGVDQV--- 121 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 LL + D R+ A+L L+Y G R+SEA+ L + + D +R+ GKG K Sbjct: 122 --AALLAATDGDDLADLRDKALLELMYATGARVSEAVGLN-VDDVIDTDVVRLTGKGAKQ 178 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RIVPL R A+ Y L+ + LF G+RG L+ IR Sbjct: 179 RIVPLGSYARAAVSAYLVRARPTLSTRGRATPALFLGMRGARLSRQNVWLIIRAAADRAD 238 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 L + + H LRHSFATHLL+ G D+R +Q +LGH ++TTQ+YT V + D + ++Y Sbjct: 239 LTVEVSPHILRHSFATHLLAGGADVRVVQELLGHSSVATTQLYTLVTA----DTLRDVYV 294 Query: 316 QTHP 319 HP Sbjct: 295 SAHP 298 >gi|319892267|ref|YP_004149142.1| Site-specific tyrosine recombinase [Staphylococcus pseudintermedius HKU10-03] gi|317161963|gb|ADV05506.1| Site-specific tyrosine recombinase [Staphylococcus pseudintermedius HKU10-03] Length = 303 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 98/312 (31%), Positives = 164/312 (52%), Gaps = 24/312 (7%) Query: 12 FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71 FEL + ++ +L L+ ER S TL++Y D QF FLA +E++++ + Y + Sbjct: 6 FELKQIQEQFLDMLKRERFFSDHTLKAYHDDLVQFNRFLA---QEQLSLTAFK---YIDA 59 Query: 72 RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131 R ++ + ++ R +S ++SF + + + + + + KK LP Sbjct: 60 RNYLQTLYDLGLQRTTVSRKISTLRSFYAFWMTQDHEIVNPFVQLVHPKKERYLPTFFYT 119 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 ++ L V+ +H+ R+ IL L Y G+R+SE +SL +++ + +++ Sbjct: 120 EEMEALFQTVM-QDAHK----GLRDRVILELFYATGIRVSELVSLKTEDVDLEMCWIKVL 174 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNP-GVFQRYIRQ 249 GKG K RIVP R++I +Y L F N+Q P L ++G+P+ GV RY+ Sbjct: 175 GKGGKERIVPFGEFCRQSIEQY--LAEFAPIQNVQHPYLITNLKGQPITERGV--RYVLN 230 Query: 250 --LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 ++R G+ S H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V ++ Sbjct: 231 DIVKRTAGVT-SIHPHKLRHTFATHLLNEGADLRTVQSLLGHVNLSTTGRYTHVTNQQ-- 287 Query: 308 DWMMEIYDQTHP 319 + +Y Q HP Sbjct: 288 --LRNVYLQAHP 297 >gi|322419214|ref|YP_004198437.1| tyrosine recombinase XerD [Geobacter sp. M18] gi|320125601|gb|ADW13161.1| tyrosine recombinase XerD [Geobacter sp. M18] Length = 292 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 92/300 (30%), Positives = 150/300 (50%), Gaps = 18/300 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L +ERG + T+ +Y D ++L +L + Q+ +++ ++ K + Sbjct: 8 FLNYLLVERGAAANTVAAYSRDLTRYLAYLGEREPD--------QIRPSDVTGYLGKLKG 59 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + I RS R+LS ++ ++L + + + K LP L+ ++ Sbjct: 60 EGIAPRSRARALSALRMLHRFLVREGHCEVNPTAIVEAPKGLLKLPTVLSSREV-----E 114 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LL + +T I+ R+ A+L LLY GLR+SE + L ++ L GKGDK R++ Sbjct: 115 ALLASPLDTGAIELRDKAMLELLYATGLRVSELVGLKTGDVNIAAGYLMTIGKGDKERLI 174 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ S +A+ EY + +L PL F G+ + F I++ G+ Sbjct: 175 PMGESACRAVGEYLEKARQELLKQKSSPLLFISRLGEGMTRQAFWNIIKKRALQAGVRSG 234 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRHSFATHLL NG DLRS+Q +LGH LSTTQIYT+V + + ++ + HP Sbjct: 235 ISPHTLRHSFATHLLENGADLRSVQIMLGHADLSTTQIYTHVTRER----LKRLHAEFHP 290 >gi|159901208|ref|YP_001547455.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779] gi|254799344|sp|A9B1E0|XERC_HERA2 RecName: Full=Tyrosine recombinase xerC gi|159894247|gb|ABX07327.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779] Length = 306 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 95/286 (33%), Positives = 154/286 (53%), Gaps = 11/286 (3%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ERGL+ T+ +Y D QF+ F+ E+ T + +S ++ AF+ Sbjct: 6 EQFLAYLTVERGLTGNTIAAYRTDLDQFVNFIV----ERNT-GSWSNVSRDDLLAFLLFL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + ++ ++ R + IKSF +YL+ + T + N+ + K LP+A+ Q L+ Sbjct: 61 KEKRYATSTIARRTAAIKSFFEYLQGQHSITTNPTENLDSPKVDRFLPKAITVAQVDELL 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + L + E R+ A+L +LY G+R+SE ++L ++ +R GK +K R Sbjct: 121 ELPLTTSGPE----GLRDKAMLEVLYATGMRVSELVALDVGDVDLAIHQIRCLGKANKER 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +P++ S A+ EY D+ ++ N P LF RGK L F ++ LGL Sbjct: 177 NLPIVGSASTALEEYLDIARGQISRNGGDPALFLNHRGKRLTRQGFWLILKGYAERLGLS 236 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 T HTLRHSFATH+L+ G DLR +Q +LGH +STTQIYT+V++ Sbjct: 237 -DLTPHTLRHSFATHMLNRGKDLREVQELLGHASISTTQIYTHVSN 281 >gi|295396859|ref|ZP_06806987.1| tyrosine recombinase XerC [Aerococcus viridans ATCC 11563] gi|294974885|gb|EFG50584.1| tyrosine recombinase XerC [Aerococcus viridans ATCC 11563] Length = 311 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 90/303 (29%), Positives = 148/303 (48%), Gaps = 20/303 (6%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87 E+ S T+++Y D F F+ + I + Q++Y +IR ++ + + +S Sbjct: 17 EKQYSPETIKAYMADLDNFQAFM-----KDAGIAQLDQVAYRDIRIYLGNLQRGGLSRKS 71 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 + R LS ++S L R++ +E+ ++ K LP E + +L D+V Sbjct: 72 ISRHLSSLRSAYNLLLDRELVSENPFNYVKTAKTGLKLPDFFYESEIQSLFDSV-----Q 126 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207 + I RN A+L LYG G R+SE L + + ++GKG+K R VP+ Sbjct: 127 GSDPIALRNRALLEFLYGTGARVSEVRDLAINQVDLTADMVLLRGKGNKDRYVPIGSFCH 186 Query: 208 KAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 A+++Y + + N + LF +G+ L + Q+ + LS Sbjct: 187 DALVDYLENGRSQLMAKGHYEDNEHVFLFVNYKGEQLTSQGIAYILDQIVKNSATTLSIH 246 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321 H LRHSFATHLL+NG D+R++Q +LGH LSTTQIYT+++ + + + Y Q HP Sbjct: 247 PHKLRHSFATHLLNNGADIRTVQELLGHASLSTTQIYTHLSKEK----LRDNYLQFHPHA 302 Query: 322 TQK 324 QK Sbjct: 303 KQK 305 >gi|238855698|ref|ZP_04645995.1| tyrosine recombinase XerC [Lactobacillus jensenii 269-3] gi|260664453|ref|ZP_05865305.1| tyrosine recombinase XerC [Lactobacillus jensenii SJ-7A-US] gi|282932212|ref|ZP_06337659.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1] gi|313472147|ref|ZP_07812639.1| tyrosine recombinase XerC [Lactobacillus jensenii 1153] gi|238831683|gb|EEQ24023.1| tyrosine recombinase XerC [Lactobacillus jensenii 269-3] gi|239529518|gb|EEQ68519.1| tyrosine recombinase XerC [Lactobacillus jensenii 1153] gi|260561518|gb|EEX27490.1| tyrosine recombinase XerC [Lactobacillus jensenii SJ-7A-US] gi|281303662|gb|EFA95817.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1] Length = 302 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 90/282 (31%), Positives = 138/282 (48%), Gaps = 18/282 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L ERG S LTL +Y D +Q F + +Q++ +I +I+ + + Sbjct: 14 LAYERGYSNLTLTAYLNDLKQAEDFW----KNNGGFNGFKQVTSRDIEIYIASLASTGLS 69 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S R LS +KSF K+L +R + + +KS LP E + ++D++ Sbjct: 70 QASQARKLSSLKSFYKFLTRRNLVEVDPTQTVSIHRKSKKLPEFFYEPEIKKVLDSL--- 126 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + + RN A+ L Y G+R+SE +LT + I D + + GKG+K R VP Sbjct: 127 --SASDKLTVRNKAMFELFYATGMRVSEVSNLTLEQIDFDVQMILVHGKGNKDRYVPFGD 184 Query: 205 SVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 + +L Y + P D N + F RG L + +R++ + GL + Sbjct: 185 YAKACLLRYLNEARRLFNPDDDNHYV----FLDNRGHQLTSRGIEYIMRKVFQKGGLSAN 240 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 H LRH+FAT +L+NG DLRS+Q +LGH LSTTQIYT+V Sbjct: 241 VHPHELRHTFATQMLNNGADLRSVQELLGHESLSTTQIYTHV 282 >gi|320540116|ref|ZP_08039771.1| site-specific tyrosine recombinase [Serratia symbiotica str. Tucson] gi|320029782|gb|EFW11806.1| site-specific tyrosine recombinase [Serratia symbiotica str. Tucson] Length = 299 Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 95/303 (31%), Positives = 156/303 (51%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ER L++ TL SY D + +A+ + IT+ + L +++AF+++R Sbjct: 10 EQFLDALWLERNLAENTLVSYRLDLQ---ALVAWLNHQNITLLQAQAL---DLQAFLAER 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K+ + + + K LP+ L+E Q Sbjct: 64 VDGGYKATSSARLLSAMRRLFQYLYREKLRADDPTTRLASPKLPQRLPKDLSEAQI---- 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + LL + I+ R+ A+L +LY GLR+SE + LT ++ Q +R+ GKG+K R Sbjct: 120 -DALLKAPCVDQPIELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKER 178 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL I Y + P+ +N LF R + + F I+ G+ Sbjct: 179 LVPLGEEAVYWIENYLEHGRPWLVNSQALDVLFPSQRCQQMTRQTFWHRIKHYAILAGID 238 Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Q Sbjct: 239 SERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQQ 294 Query: 317 THP 319 HP Sbjct: 295 HHP 297 >gi|325922226|ref|ZP_08184012.1| tyrosine recombinase XerC subunit [Xanthomonas gardneri ATCC 19865] gi|325547296|gb|EGD18364.1| tyrosine recombinase XerC subunit [Xanthomonas gardneri ATCC 19865] Length = 305 Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 91/314 (28%), Positives = 158/314 (50%), Gaps = 25/314 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK--------ITIQTIRQLSYTE 70 +++L L++ER +S TL +Y R +++ E+K + QL+ + Sbjct: 5 EDFLAYLQVERQVSAHTLDAYR---RDLAALVSWAAEQKGEDGAPLDAALLDSAQLTSAQ 61 Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 +R F++ + + +SL+R LS +S+ +L K S MR K LP+ L+ Sbjct: 62 LRQFVAAEHRRGLSPKSLQRRLSACRSYYAWLLKHGRIAASPAAAMRAPKAPRKLPQVLD 121 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 +A+ LV+ + R+ A+L L Y GLR+SE +L +++ + + + Sbjct: 122 ADEAVRLVEVP------TDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLESGLVMV 175 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 GKG+K R+VP+ P A+ E+ D + +F G G ++ Q I+QL Sbjct: 176 LGKGEKQRLVPVGPHAITALREWLR----DSGGRAETHVFPGRAGGAISQRAVQIRIKQL 231 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ H LRHSFA+H+L + GDLR +Q +LGH ++TTQIYT+++ ++ + Sbjct: 232 AVRQGMFKDVHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQH----L 287 Query: 311 MEIYDQTHPSITQK 324 ++YD HP +K Sbjct: 288 AKVYDAAHPRAKRK 301 >gi|212710035|ref|ZP_03318163.1| hypothetical protein PROVALCAL_01088 [Providencia alcalifaciens DSM 30120] gi|212687242|gb|EEB46770.1| hypothetical protein PROVALCAL_01088 [Providencia alcalifaciens DSM 30120] Length = 300 Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 101/308 (32%), Positives = 163/308 (52%), Gaps = 27/308 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + +E+ L++ TL SY D + +L ++++ ++T++ + ++++F+++R Sbjct: 11 EQFLDTIWLEQDLAENTLASYRNDLQSLDRWL---DKQQLHLETVQSI---DLQSFLAER 64 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS I+ +Y + KI ++ + K LP+ L+EKQ L+ Sbjct: 65 IDGGYKAASSARLLSSIRRLFQYFYREKIRSDDPSAVIAAPKIPQRLPKDLSEKQVEDLL 124 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + S ++ R+ A+L +LY CGLR+SE LT +I Q +R+ GKGDK R Sbjct: 125 NAPATEDS-----LELRDKAMLEVLYACGLRVSELTGLTFSDISLRQGVVRVVGKGDKER 179 Query: 199 IVPLLPSVRKAI--LEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ---RYIRQLR 251 ++PL +AI LE Y + P LN LF RG + F +Y L Sbjct: 180 LIPL---GEEAIYWLEKYIAEGRPDLLNGKTSDVLFPSKRGTKMTRQTFWHRIKYYAVLA 236 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 G LS H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + Sbjct: 237 NIDGEALS--PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LR 290 Query: 312 EIYDQTHP 319 +++Q HP Sbjct: 291 ALHEQHHP 298 >gi|288928808|ref|ZP_06422654.1| integrase/recombinase XerD [Prevotella sp. oral taxon 317 str. F0108] gi|288329792|gb|EFC68377.1| integrase/recombinase XerD [Prevotella sp. oral taxon 317 str. F0108] Length = 304 Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 85/286 (29%), Positives = 149/286 (52%), Gaps = 12/286 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +++ L++ER LS T+++Y D R L ++ F+ + +L + F + Sbjct: 15 YMRYLKLERNLSPNTIEAYRNDLRWLLAYVNFHG------LKVEELKLEHLDNFSASLHD 68 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q+I RS R LSG++SF K+L + + N+LP L+ + L + Sbjct: 69 QRIMPRSQARILSGVRSFFKFLLLDGFIDADPTELLVSPHVRNALPDVLSTAEVDRLEAS 128 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + L +KW RN AI+ +L+ CGLR+SE ++L N+ ++ +R+ GKGDK R+V Sbjct: 129 IDL-----SKWEGQRNRAIVEVLFSCGLRVSELVNLKLSNLYVEEKFVRVTGKGDKERLV 183 Query: 201 PLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ + ++ D + + +F RG L + I++ G+ + Sbjct: 184 PISSRALDELNAWFADRNAMRIKPGEEDYVFLNRRGAHLTRTMILIMIKRQAVAAGITKT 243 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + HTLRHSFAT LL G DL +IQ+++GH ++TT+IYT++++ + Sbjct: 244 ISPHTLRHSFATALLEGGADLIAIQAMMGHEDIATTEIYTHIDTSS 289 >gi|256829239|ref|YP_003157967.1| tyrosine recombinase XerD [Desulfomicrobium baculatum DSM 4028] gi|256578415|gb|ACU89551.1| tyrosine recombinase XerD [Desulfomicrobium baculatum DSM 4028] Length = 292 Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 98/317 (30%), Positives = 154/317 (48%), Gaps = 42/317 (13%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 +E +LQ+L + RGL++ T+++Y D L F F +E ++ Q+ + ++ Sbjct: 3 EEIDAYLQHLTVIRGLAEKTVEAYGSD---LLFFRDFLSELG---GSLHQIDEHTLFLYM 56 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 R + + + S+ R++S ++ F ++L + + S + + K LP L+ + Sbjct: 57 VHLRRKGLKNTSMARNISSLRGFFEFLVQERHLASSPAALLDSPKLVRKLPEVLSRDEVT 116 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L+D L+T + R+ +L LLY CGLR+SE +SLT + LR+ GKG Sbjct: 117 ALLDRPALNTP-----LGFRDRTMLELLYACGLRVSELVSLTAPDFDPQAGLLRVLGKGS 171 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----------QR 245 K R VPL S +L + L PLF P VF Q Sbjct: 172 KERYVPLHDSAVSFMLSF---------LRQWRPLF-----GPKTDTVFLNRSGLGLSRQG 217 Query: 246 YIRQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + LRRY G+ + HTLRHSFATHLL G DLR++Q +LGH + T+IYT+V Sbjct: 218 VWKLLRRYALEAGITRPVSPHTLRHSFATHLLEGGADLRTVQILLGHSDIMATEIYTHVQ 277 Query: 303 SKNGGDWMMEIYDQTHP 319 S M+ ++ + HP Sbjct: 278 SAR----MVALHRKFHP 290 >gi|329947868|ref|ZP_08294800.1| phage integrase, SAM-like domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328523492|gb|EGF50590.1| phage integrase, SAM-like domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 306 Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 91/301 (30%), Positives = 146/301 (48%), Gaps = 18/301 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L ++R LS+ T ++Y D L FL + + L ++R +++ Sbjct: 16 LSLQRDLSQHTARAYLVDICDLLSFLGVGEGDAPIGAALATLDLADLRDWLAALAASGHS 75 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 +L R + +++F + + I T +R + N LP L +QA L+ Sbjct: 76 RATLARRSASVRTFSAWAFEEGILTSDVAARLRAPRVDNRLPGVLTAQQAAQLLQTAA-D 134 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL-L 203 + + + R+ AI LY G+R+SE + L ++ Q TLR+ GKG K R VP L Sbjct: 135 LAADGDILAVRDLAIAETLYATGVRVSELVGLDVTDLDHSQRTLRVLGKGRKERTVPYGL 194 Query: 204 PSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 P+ R LE + ++C D LF G RG+ ++P + + +L G+P Sbjct: 195 PAARA--LEGWLSRREEICAPDAGTA----LFLGARGRRIDPRAARDIVHRLCAAAGVP- 247 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 H LRHS ATH+LS G DLRS+Q +LGH L+TTQ YT+V+++ + +Y+Q Sbjct: 248 DLGPHGLRHSAATHVLSGGADLRSVQELLGHSSLATTQRYTHVSAER----LRSVYEQAF 303 Query: 319 P 319 P Sbjct: 304 P 304 >gi|254494929|ref|ZP_01052592.2| phage integrase family protein [Polaribacter sp. MED152] gi|213690511|gb|EAQ42020.2| phage integrase family protein [Polaribacter sp. MED152] Length = 315 Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 89/308 (28%), Positives = 167/308 (54%), Gaps = 19/308 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L E+ SK T+ +Y+ D F F+ ++ + + +++Y++IR++I Sbjct: 26 FLDYLSHEKNYSKHTVIAYQKDLNSFKSFIRINFDQ----EDLLEVNYSQIRSWIVSLVE 81 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 ++I +R++ R +S +KSF K+L+K + + + + LK + + ++K+ T+ Sbjct: 82 EEISNRTINRKISSLKSFYKFLQKTEQIKSNPLQKHKALKVAKKVQVPFSQKEVATV--- 138 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 L ++ E ++ RN ++ + Y G+R +E +++ ++I + L++ GK +K R+V Sbjct: 139 --LESNTENSFVSIRNKLMVEIFYSTGIRRAELINIQLKDINSGSNVLKVLGKRNKERLV 196 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 P+L SV K L Y +++ N + LF +G + + R I + + Sbjct: 197 PILNSVLKT-LNLYLGHRKNISNNSEY-LFITEKGNKIYETLVYRVINSYFSKVSSKVKK 254 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 + H LRHSFATHLL+ G DL S++ +LGH L++TQ+YT+ N D + ++Y+Q HP Sbjct: 255 SPHMLRHSFATHLLNEGADLNSVKELLGHSSLASTQVYTH----NSLDAIKQVYNQAHP- 309 Query: 321 ITQKDKKN 328 K KKN Sbjct: 310 ---KSKKN 314 >gi|154494032|ref|ZP_02033352.1| hypothetical protein PARMER_03377 [Parabacteroides merdae ATCC 43184] gi|154086292|gb|EDN85337.1| hypothetical protein PARMER_03377 [Parabacteroides merdae ATCC 43184] Length = 301 Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 93/297 (31%), Positives = 158/297 (53%), Gaps = 14/297 (4%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E+ LS ++ +Y D + F+ +E K ++Y +++ F+++ I Sbjct: 15 LRLEKALSANSIDAYLTDLDKLTNFVE--SEGK----KYADVTYDDLQQFVARLHDIGIH 68 Query: 85 DRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 RS R +SGIKSF ++L ITT+ L + + K LP L + +++D + L Sbjct: 69 PRSQARIISGIKSFYRFLFLDDYITTDPTEL-LESPKIGLKLPEVLTVNEINSILDTIDL 127 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 T RN A+L +LY CGLR+SE +SL ++ D+ ++++GKG K R+VP+ Sbjct: 128 -----TLPEGQRNRAMLEVLYSCGLRVSELVSLRFTDVYFDEGFIKVEGKGSKQRLVPIS 182 Query: 204 PSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 + K I Y YD + + LF RG L+ + I+Q G+ + + Sbjct: 183 ETAIKEIKNYLYDRNHVAVKKGFEDILFLSRRGTALSRIMVFHIIKQQTEMAGIKKNVSP 242 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HT RHSFATHLL G +L +IQ +LGH +++TT+IYT+++ + ++E + ++ P Sbjct: 243 HTFRHSFATHLLEGGANLLAIQEMLGHEKITTTEIYTHIDRQFLRKEILEHHPRSKP 299 >gi|170718451|ref|YP_001783668.1| site-specific tyrosine recombinase XerC [Haemophilus somnus 2336] gi|189030077|sp|B0UWL5|XERC_HAES2 RecName: Full=Tyrosine recombinase xerC gi|168826580|gb|ACA31951.1| tyrosine recombinase XerC [Haemophilus somnus 2336] Length = 295 Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 96/311 (30%), Positives = 162/311 (52%), Gaps = 27/311 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q + L IER LS TL +Y+ + ++ L ++ I + +Q++ + +R +++ Sbjct: 6 QKYYNYLRIERQLSPYTLINYQRQLEKIVVIL-----QQNDIHSWQQVTPSVVRFVLAQS 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + + +RSL LS ++ FL YL + ++ + + K+S LP+ ++ +Q L+ Sbjct: 61 RKEGLHERSLALRLSALRQFLNYLVVQGELKVNSAVGISAPKQSKYLPKNMDMEQVQQLL 120 Query: 139 DNVLLHTSHETKW-IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 N E+K ID R+ A++ L+Y GLR+SE SL +I +R+ GKG+K Sbjct: 121 TN-------ESKEPIDLRDKAMMELMYSSGLRLSELQSLNLNSINIRSREVRVIGKGNKE 173 Query: 198 RIVPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 RI+P +AI ++ + P D LF G ++ Q+ + Sbjct: 174 RILPFGRYASQAIQQWLKVRLLFNPKDE------ALFVSQLGNRISHRSIQKRMETWGIR 227 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 GL H LRHSFATH+L N DLR++Q +LGH LSTTQIYT+++ ++ + ++ Sbjct: 228 QGLNGHLNPHKLRHSFATHMLENSSDLRAVQELLGHSNLSTTQIYTHLDFQH----LAQV 283 Query: 314 YDQTHPSITQK 324 YD+ HP +K Sbjct: 284 YDKAHPRAKRK 294 >gi|167945040|ref|ZP_02532114.1| tyrosine recombinase XerD [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 227 Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 86/219 (39%), Positives = 123/219 (56%), Gaps = 14/219 (6%) Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 +R + I+ F K+L K K+ + + N+ K SLP ++ K+ L+D+V + Sbjct: 4 QRHIITIRGFYKFLIKEKLISFDPVKNIDIPKTGLSLPEVISSKEMELLIDSV------D 57 Query: 149 TKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL----L 203 TK RN+A+L LYG GLR+SE +S+ +NI + S +RI GKG K RIVP+ + Sbjct: 58 TKNPRGLRNAAMLETLYGAGLRVSELVSMKMENINLEASFIRIFGKGSKERIVPIGSFAI 117 Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 VR I+ P L LF GKP+ F + +++ R G+ T H Sbjct: 118 EKVRNWIMHGR---PIILKNIPSHYLFVARAGKPMTRQGFWKLLKKYSRASGISKKITPH 174 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 T RHSFATHLL G DLRS+Q++LGH +STTQIYT+V+ Sbjct: 175 TFRHSFATHLLEGGADLRSVQTMLGHSDISTTQIYTHVS 213 >gi|300313582|ref|YP_003777674.1| site-specific integrase/recombinase [Herbaspirillum seropedicae SmR1] gi|300076367|gb|ADJ65766.1| site-specific integrase/recombinase protein [Herbaspirillum seropedicae SmR1] Length = 330 Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 90/314 (28%), Positives = 155/314 (49%), Gaps = 22/314 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L +R LS T++ Y D ++ LA EE I +R+ + +IR ++ Sbjct: 16 YLSFLRTQRKLSDHTVEHYGRDLQELRSLLAPAGEEHADID-LRKTTQVQIRKCAARLHA 74 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + RS+ R LS + F +L + + + ++ KKS LP+AL A+ LV Sbjct: 75 RGLNARSIARKLSAWRGFFGWLSMQMDLAANPVDGVKAPKKSKPLPKALAADDAIRLVSQ 134 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-----------DQSTLR 189 ++ + A N A+ LLY GLR+SE + + ++ + +++ + Sbjct: 135 PDPVRDPDST-LAACNRAMFELLYSSGLRVSELVGIDVADVREGGYESAGWVDLEEAEVT 193 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCP----FDLNLNIQLPLFRGIRGKPLNPGVFQR 245 + GKG K R VP+ + R A+ ++ L D + LF RG ++P V Q Sbjct: 194 VTGKGGKKRKVPVGQAARAALADWLPLRARLRKADGGPDSHA-LFLNERGARISPRVAQL 252 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 ++ R L + H LRHSFA+H+L + GDLR++Q +LGH ++ TQ+YT ++ + Sbjct: 253 RLKAHGRALEMASDVHPHMLRHSFASHVLQSSGDLRAVQEMLGHASITATQVYTALDFQR 312 Query: 306 GGDWMMEIYDQTHP 319 + ++YDQ HP Sbjct: 313 ----LAQVYDQAHP 322 >gi|239993652|ref|ZP_04714176.1| tyrosine recombinase [Alteromonas macleodii ATCC 27126] Length = 306 Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 88/310 (28%), Positives = 159/310 (51%), Gaps = 19/310 (6%) Query: 19 QNWLQ----NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 Q WL +L++ERGLS T+++Y+ + L Y +T ++I+ Sbjct: 12 QQWLDKFLLHLQVERGLSLHTIKNYQRQLTEVAKLLGLYEWSGLTP--------SDIKRV 63 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 ++ + RS+ LS +++F +YL + + + ++ K+ LP+ L+ + Sbjct: 64 MADAKMSGHSPRSIALRLSALRTFCQYLIDHQQLFSNPVEGIQAPKQGKPLPKQLSVDEM 123 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 L+ N +S + + + R+ A+ LLYGCGLR+SE L + + D T+++ GKG Sbjct: 124 QQLL-NASPRSSDDDEGMQLRDVAMFELLYGCGLRLSELTGLNLADCLKD-GTVKVMGKG 181 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 K RI+PL +KA+ + + P + + +F R ++ + ++ Sbjct: 182 SKQRILPLGRHAQKALNAWLKVRPAYAS-PYESAVFVSKRKTRISNRQVANRLDKMASEQ 240 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 L + H LRHSFATH+L + GDLR++Q +LGH LSTTQ+YT+++ ++ + ++Y Sbjct: 241 SLSQKVSPHKLRHSFATHVLESSGDLRAVQELLGHANLSTTQVYTHLDFQH----LAKVY 296 Query: 315 DQTHPSITQK 324 D HP +K Sbjct: 297 DAAHPRAHKK 306 >gi|322691424|ref|YP_004220994.1| recombinase [Bifidobacterium longum subsp. longum JCM 1217] gi|320456280|dbj|BAJ66902.1| recombinase [Bifidobacterium longum subsp. longum JCM 1217] Length = 311 Score = 129 bits (323), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 88/307 (28%), Positives = 150/307 (48%), Gaps = 17/307 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L ++ +ERGL+ T+ +YE D +++ +L E I ++ ++ +I+ Sbjct: 13 EQFLVHIGVERGLATATVTAYESDIAKYIDWL-----ETRGIHEPDAITKQDVEDYIAAL 67 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 RS R L+ I F ++ + T ++ K +++LP L + L+ Sbjct: 68 DQAGESARSKARRLASIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLL 127 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D S T + R+ A+L +Y G R+SEA +I D+ R+ GKG K R Sbjct: 128 DAAAAGGS--TDPVVLRDKALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQR 185 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNL--NIQLP----LFRGIRGKPLNPGVFQRYIRQLRR 252 +VPL +AI Y + +L + ++P LF RGK ++ ++ Sbjct: 186 LVPLGSYACRAITAYLNAGRGELEQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGE 245 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 G+ HTLRHSFATHL+ G D+R++Q +LGH ++TTQIYT+V+ + ++E Sbjct: 246 RAGITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPET----LIE 301 Query: 313 IYDQTHP 319 Y +HP Sbjct: 302 TYLTSHP 308 >gi|300858389|ref|YP_003783372.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41] gi|300685843|gb|ADK28765.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41] gi|302206103|gb|ADL10445.1| site-specific tyrosine recombinase XerD [Corynebacterium pseudotuberculosis C231] gi|302330656|gb|ADL20850.1| site-specific tyrosine recombinase XerD [Corynebacterium pseudotuberculosis 1002] gi|308276340|gb|ADO26239.1| site-specific tyrosine recombinase XerD [Corynebacterium pseudotuberculosis I19] Length = 310 Score = 129 bits (323), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 93/304 (30%), Positives = 150/304 (49%), Gaps = 11/304 (3%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL-SYT-EIRAFISKR 78 WL +L IERG+S TL +Y D +++L ++ + + I T R + SY ++R Sbjct: 11 WLTHLAIERGVSANTLSNYRRDVQRYLDWIESRGIDDLGILTSRDVESYVLDLRRGDPDT 70 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q + S R+L + K+ + + + LP L+ + L+ Sbjct: 71 GKQPLAASSAGRALVVARGLHKFAMMEGLISVDVAGEVSPPSTGRHLPDTLSVTEVEELI 130 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLRIQGKGD 195 + T + D R++A++ LLYG G RISE ++LT + + + LRI GKGD Sbjct: 131 SAI--PTDNIATPEDLRDAALIELLYGTGARISEIMNLTVDEVTVLEETEGMLRIVGKGD 188 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 K RIVP+ +KA+ Y L LF RG L+ + ++ R G Sbjct: 189 KHRIVPVGSMAQKALRRYLVRARPQLTKGKSHALFLNKRGGALSRQSAWQILKSSARRAG 248 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + HTLRHS+A+HLL G D+R +Q +LGH ++TTQIYT++ + N + ++ Sbjct: 249 VQKDISPHTLRHSYASHLLEGGADVRVVQELLGHSSVTTTQIYTHITADN----LRIVWS 304 Query: 316 QTHP 319 Q+HP Sbjct: 305 QSHP 308 >gi|78189085|ref|YP_379423.1| tyrosine recombinase XerD [Chlorobium chlorochromatii CaD3] gi|78171284|gb|ABB28380.1| Tyrosine recombinase XerD [Chlorobium chlorochromatii CaD3] Length = 304 Score = 129 bits (323), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 92/307 (29%), Positives = 158/307 (51%), Gaps = 25/307 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L L +ER S T SY D ++L+F+ +E+ T I +++ I F+++ Sbjct: 14 SFLNYLIVERNFSANTRSSYHNDLHRYLLFV----QEQAT--PIAEITSKVIDRFLAELV 67 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + S+ R++S I+SF K+L ++++ + + KK++ LP LN + L L++ Sbjct: 68 ALGLETTSMARNISTIRSFHKFLHNERLSSNNPAERLHLPKKAHYLPAVLNLSETLALLE 127 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + T + R+ A+L LLY G+R +E +S+ +++ D +RI GKG K R+ Sbjct: 128 APSIMQPAPTYAL--RDRAMLELLYATGVRATELISIQQEHLYSDAGFIRIFGKGSKERL 185 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-------LFRGIRGKPLNPGVFQRYIRQLRR 252 VP+ S + Y L +QL LF RG L+ ++ Sbjct: 186 VPIGASATLWVQRYQK------ELRVQLVKAHSNDFLFLNSRGGKLSRMSLFEMVKTYSV 239 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 G+ S + HTLRH+FATHL+ G DLR++Q +LGH + TTQIYT+++ ++ E Sbjct: 240 VAGITKSISPHTLRHTFATHLIEGGADLRAVQEMLGHSSIVTTQIYTHLDR----SFIKE 295 Query: 313 IYDQTHP 319 ++ HP Sbjct: 296 VHKTFHP 302 >gi|160915107|ref|ZP_02077320.1| hypothetical protein EUBDOL_01115 [Eubacterium dolichum DSM 3991] gi|158432906|gb|EDP11195.1| hypothetical protein EUBDOL_01115 [Eubacterium dolichum DSM 3991] Length = 311 Score = 129 bits (323), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 91/320 (28%), Positives = 150/320 (46%), Gaps = 43/320 (13%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q++L ++ ++ T+ SY D RQ++ ++ + I+ + + Y+ ++ F+ Sbjct: 8 QDYLHYIQAIDRKAEATIASYTNDLRQYVQYM-----QTCKIEEVENIDYSHVQDFLEYL 62 Query: 79 RTQKIGDR-----------SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127 R ++ S+ ++ + F +YL + + N+R K LP Sbjct: 63 RQDHYDEKGQCIHKKKSSASINHMITSLHVFHRYLSMTYPKLLNPVQNIRTKKAVQHLPV 122 Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 N + L+D S + + AI+ LLYGCGLR+SE SL Q + +Q Sbjct: 123 YFNMQDIERLLD------SFRDSDAEIMDKAIVELLYGCGLRVSECCSLMLQQVYLEQGF 176 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEY--------YDLCPFDLNLNIQLPLFRGIRGKPLN 239 LR+ GKG+K R+VP+ +KA+ Y Y F +F +G+ + Sbjct: 177 LRVIGKGNKERMVPMHARCKKALENYLTKVRKQRYARSNF---------VFINAKGQEIT 227 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 I++ LGL +AH+ RHSFA+HLL G DLR +Q +LGH +STTQIYT Sbjct: 228 RQYIHVMIKKRLLALGLDERLSAHSFRHSFASHLLDGGADLRVVQELLGHSDISTTQIYT 287 Query: 300 NVNSKNGGDWMMEIYDQTHP 319 +V +K + +Y HP Sbjct: 288 HVQNKR----LQSVYTSFHP 303 >gi|86158112|ref|YP_464897.1| tyrosine recombinase XerD subunit [Anaeromyxobacter dehalogenans 2CP-C] gi|85774623|gb|ABC81460.1| tyrosine recombinase XerD subunit [Anaeromyxobacter dehalogenans 2CP-C] Length = 314 Score = 129 bits (323), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 92/300 (30%), Positives = 157/300 (52%), Gaps = 15/300 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L ++ +E+GL++ ++++Y D R++L L +++ + ++ +EI+A +++ Sbjct: 27 FLAHVRVEKGLAENSVEAYGRDLRRYLEHL-----DELGVDAWERVGRSEIQAHLAELVR 81 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + RS R+LS I+S + L ++T+ + + + LP L+ + VD Sbjct: 82 RGLSPRSQARALSAIRSLHRLLAAERVTSADPSDEIESPRPGRRLPGLLSHDE----VDR 137 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LL R+ A+L LLY GLR+SE +SL ++ + L +GKGDK RIV Sbjct: 138 -LLAAPDVRSAAGIRDRAMLELLYATGLRVSELVSLQLNDVNLETRVLVARGKGDKERIV 196 Query: 201 PLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ A+ Y + L + LF RG + F + + + R G+ Sbjct: 197 PVGAPAADAVKAYLAVARERLLHGRRSKDLFVTPRGGRMTRQGFAKILDRCARRAGIRRR 256 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H LRHSFATHLL G DLR++Q +LGH +STTQIYT+V+ + + +YD+ HP Sbjct: 257 ISPHKLRHSFATHLLEGGADLRAVQEMLGHADVSTTQIYTHVDRTH----VKRLYDRFHP 312 >gi|83748651|ref|ZP_00945669.1| Integrase/recombinase (XerC/CodV family) [Ralstonia solanacearum UW551] gi|207741931|ref|YP_002258323.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum IPO1609] gi|83724695|gb|EAP71855.1| Integrase/recombinase (XerC/CodV family) [Ralstonia solanacearum UW551] gi|206593317|emb|CAQ60244.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum IPO1609] Length = 329 Score = 129 bits (323), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 99/325 (30%), Positives = 161/325 (49%), Gaps = 39/325 (12%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L+ ER LS TL++Y TR+ + I R L + IR+ I+ Sbjct: 23 YLDVLKFERQLSPHTLENY---TRELAVLQRLGARFATGIDLTRLLPH-HIRSMIAHLHG 78 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVD 139 + RS+ R+LS + + K+L R+ +N ++ +R K LP+AL+ +QA+ L++ Sbjct: 79 NGLSGRSIARALSVWRGWYKWLALREAAVTANPVDGVRAPKSPKRLPKALSVEQAVALME 138 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----------MD-DQSTL 188 L ET R+ A+ L Y CGLR+SE + L +++ +D + + Sbjct: 139 Q-LPGDDPET----IRDRAVNELFYSCGLRLSELVGLDLRHVKAGDYASAGWLDLEAREV 193 Query: 189 RIQGKGDKIRIVPL---------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239 + GKG+K R VP+ + L D P D + LF RGK L Sbjct: 194 MVLGKGNKYRTVPVGSKAAEALAAWLAARPQLARPDAAPEDAHA-----LFLSARGKRLT 248 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 Q +++ G+P H LRHSFATH+L + GDLR++Q +LGH +++TQ+YT Sbjct: 249 QRQIQIRMKRNAIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT 308 Query: 300 NVNSKNGGDWMMEIYDQTHPSITQK 324 +++ ++ + +IYDQ HP +K Sbjct: 309 SLDFQH----LAKIYDQAHPRAKKK 329 >gi|302342643|ref|YP_003807172.1| tyrosine recombinase XerD [Desulfarculus baarsii DSM 2075] gi|301639256|gb|ADK84578.1| tyrosine recombinase XerD [Desulfarculus baarsii DSM 2075] Length = 311 Score = 129 bits (323), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 95/302 (31%), Positives = 147/302 (48%), Gaps = 18/302 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +L ERGL++ TL +Y D FL +Q Q+ + A+++ Sbjct: 23 YLDHLAGERGLARNTLAAYADDLADICGFL-----HDNGVQGWEQVDELHMVAYLAHAAK 77 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + S R LS + + YL +R+ + + +R KK+ LP L++++ L L Sbjct: 78 EGLAANSRARRLSAARGLVGYLLRREKLSADPLATLRGPKKTAGLPHFLSQEEMLRL--- 134 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 L T + R+ A+L +YG GLR+SE + L I L ++GKG K R+V Sbjct: 135 --LETPAADSDLGRRDRAMLEAMYGAGLRVSEVIDLGVGQIQFQIGCLLVRGKGAKERLV 192 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 PL V LE Y P L Q +F RG L+ + + + G+ Sbjct: 193 PL-HQVAIQRLEDYLRGPRQNLLRGQKASDTVFLNARGGKLSRMGVWKILAKHVAAAGID 251 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + HTLRH+FATHLL G DLRS+Q +LGH + TTQIYT++ K +++++ Q Sbjct: 252 HHVSPHTLRHTFATHLLEGGADLRSVQLMLGHADIGTTQIYTHLGMKR----LVDVHRQC 307 Query: 318 HP 319 HP Sbjct: 308 HP 309 >gi|254282053|ref|ZP_04957021.1| tyrosine recombinase XerC [gamma proteobacterium NOR51-B] gi|219678256|gb|EED34605.1| tyrosine recombinase XerC [gamma proteobacterium NOR51-B] Length = 304 Score = 129 bits (323), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 83/292 (28%), Positives = 146/292 (50%), Gaps = 16/292 (5%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 R +S T+ +Y D F F + R + + +R++ + + Q ++ Sbjct: 20 RRMSHHTVSNYRRDLNHFEEFC-----RASNCTSPRDIKESVVRSWAGQMQRQGKAPATI 74 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 +R LS ++S+ K+L R + + +R ++ LP+ + + L T Sbjct: 75 QRGLSSVRSYFKHLAARHADISNPAIGIRAPRRPRKLPKTIEADRIGALFQRPAEST--- 131 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 ++ R+ AI LLY GLR++E + + +++ + + + GKGDK R VP+ + K Sbjct: 132 ---LEKRDQAIAELLYSSGLRLAELVDVNLEDLDRREGVITVTGKGDKTRTVPVGVAALK 188 Query: 209 AILEYYDLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 A+ + P L+ + PLF RG L Q +++L + L + H LRH Sbjct: 189 ALEAWIACRPIGQEVLSAKAPLFVNQRGTRLGQRSVQDRLKKLAKATHLGQNLHPHMLRH 248 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 SFATHLL + GDLR++Q +LGH +STTQIYT+++ ++ + ++YD HP Sbjct: 249 SFATHLLESSGDLRAVQELLGHANISTTQIYTHLDFQH----LSKVYDTAHP 296 >gi|187250579|ref|YP_001875061.1| integrase family protein [Elusimicrobium minutum Pei191] gi|186970739|gb|ACC97724.1| Integrase family protein [Elusimicrobium minutum Pei191] Length = 295 Score = 129 bits (323), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 91/291 (31%), Positives = 148/291 (50%), Gaps = 17/291 (5%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 + S+ TL++Y D + ++A E +T ++T++R ++ ++ Sbjct: 18 KNFSRHTLRAYTADLKDVENYMA---EHNLTAAEF--FTHTKLRGYLGVTSEGDYKKNTV 72 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 R +S ++SF KYL K ++ + + K+ LP+ L +++ L+D T+ Sbjct: 73 LRKISVMRSFAKYLLKHEVIKNNPFKLLPLPKREKLLPKFLTQEETDRLID-----TAAN 127 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 + AR+ A+ L+Y GLR SE L+ ++I + +R+ GKG K R+VP+ + Sbjct: 128 QGKLPARDKALFELIYSSGLRRSEVTGLSIKDIDLNLGVVRVMGKGSKERLVPITDLAIE 187 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 A+ EY N PLF G L ++ + L TAH+LRHS Sbjct: 188 ALKEYLSTRGV---YNSGDPLFLNRLGGRLTGDGLAYLVKNITIKANLARKVTAHSLRHS 244 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 FATH+L+NG DLRS+Q +LGH LS TQ+YT+V+ D + +IY QTHP Sbjct: 245 FATHMLNNGCDLRSLQEMLGHKSLSATQVYTHVSL----DRLKKIYGQTHP 291 >gi|294651114|ref|ZP_06728450.1| site-specific tyrosine recombinase [Acinetobacter haemolyticus ATCC 19194] gi|292823008|gb|EFF81875.1| site-specific tyrosine recombinase [Acinetobacter haemolyticus ATCC 19194] Length = 308 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 91/305 (29%), Positives = 164/305 (53%), Gaps = 22/305 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL+ I + S T+ +Y+ D F F + +++ +Q + +++R +++ R Sbjct: 15 WLKE-RIIQNQSAHTISAYQRDLSDFFRFCEY---KQLQLQDV---EASDLREYLASRVE 67 Query: 81 Q-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q ++ SL+R+L+ I+ F+K+ + + + +++ ++ LP ++ + V+ Sbjct: 68 QDQLSSSSLQRNLTSIRQFMKWAAQGQYLQHNPSADLKLKRQPRPLPGMID----IETVN 123 Query: 140 NVLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 +L + E K ID R+ A+L LLY GLR++E LT ++I ++ LRI GKG+ Sbjct: 124 QILDQAAPE-KPIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLLRITGKGN 182 Query: 196 KIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 K RIVP +++++E+ + + + +F RG L P + ++ + Sbjct: 183 KTRIVPFGTKAKQSLIEWLKIYRIWQGSFMADSAVFISQRGGALMPRQIENRVKLQAQRA 242 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ + H LRH FA+H+LS DLRS+Q +LGH LSTTQIYT+V+ D + ++Y Sbjct: 243 GVNVDLHPHLLRHCFASHMLSASRDLRSVQEMLGHSNLSTTQIYTHVDF----DQLAKVY 298 Query: 315 DQTHP 319 DQ HP Sbjct: 299 DQAHP 303 >gi|313813390|gb|EFS51104.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL025PA1] gi|327334220|gb|EGE75934.1| putative tyrosine recombinase XerC [Propionibacterium acnes HL097PA1] Length = 315 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 78/285 (27%), Positives = 137/285 (48%), Gaps = 9/285 (3%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T++ Y D + + ++ + ++ +++RA+++ R +++R S Sbjct: 38 TIRGYRADLIDLMGHAHSHGDDALG-----RIGTSQVRAWLADTRVAGASAATMQRRWSA 92 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + F ++ + + + + K LP L QA ++D + H+ A Sbjct: 93 ARVFFRWAANEGLISADPTTALNSAKVPKRLPATLGVDQARHILDEAVAQARHDESPHGA 152 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R++AIL +LYG GLR+ E L ++ + T+++ GKGDK R VP+ +AI + Sbjct: 153 RDAAILEVLYGGGLRVGELCGLDLGDVDRSRRTVKVTGKGDKERTVPMGAPALRAIDTWL 212 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 + + LF G RG+ ++ V +R + R H LRH+ ATHLL Sbjct: 213 PRREEWVGPHSGQALFLGARGRRIDQRVVRRVVHTHLRAEPDSPDLGPHGLRHAMATHLL 272 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 G DLR++Q ILGH L+TTQIYT+V+++ + + Q HP Sbjct: 273 EGGADLRTVQDILGHESLATTQIYTHVSTER----LRTAFRQAHP 313 >gi|325983273|ref|YP_004295675.1| tyrosine recombinase XerD [Nitrosomonas sp. AL212] gi|325532792|gb|ADZ27513.1| tyrosine recombinase XerD [Nitrosomonas sp. AL212] Length = 303 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 90/297 (30%), Positives = 155/297 (52%), Gaps = 15/297 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E GLS+ TL SY D + +F + + + + + +++ F++ R K+ Sbjct: 18 LWLEDGLSRNTLDSYRNDLQ---LFSEWLKRRNPSNSMLTEATNSDLLEFLASRVAAKMK 74 Query: 85 DRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 + R LS +K F ++L ++ KI + + LN+ K LP +L+EK+ +LL Sbjct: 75 ASTTSRELSSLKRFYRFLLRQGKIAIDPS-LNIETPKLQRHLPESLSEKEV-----ELLL 128 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 + + R+ A+L LY GLR+SE ++L + D LR+ GKG K R+ P+ Sbjct: 129 SAPDLAQPLGLRDRAMLEALYASGLRVSELINLKYSQVSMDMGVLRVMGKGRKERLAPVG 188 Query: 204 PSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 + + Y + P LN + +F RG + F I++ + +G+ + Sbjct: 189 EESLQWLNRYTKEARPLLLNGIVTDTIFVTTRGAAMTRQAFWYLIKRYAQLVGIAKQLSP 248 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT++ + + +++ + HP Sbjct: 249 HTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHIARER----LKQLHAKHHP 301 >gi|207727540|ref|YP_002255934.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum MolK2] gi|206590777|emb|CAQ56389.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum MolK2] Length = 329 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 99/325 (30%), Positives = 161/325 (49%), Gaps = 39/325 (12%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L+ ER LS TL++Y TR+ + I R L + IR+ I+ Sbjct: 23 YLDVLKFERQLSPHTLENY---TRELAVLQRLGARFATGIDLTRLLPH-HIRSMIAHLHG 78 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVD 139 + RS+ R+LS + + K+L R+ +N ++ +R K LP+AL+ +QA+ L++ Sbjct: 79 NGLSGRSIARALSVWRGWYKWLALREAAVTANPVDGVRAPKSPKRLPKALSVEQAVALME 138 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----------MD-DQSTL 188 L ET R+ A+ L Y CGLR+SE + L +++ +D + + Sbjct: 139 Q-LPGDDPET----IRDRAVNELFYSCGLRLSELVGLDLRHVKAGDYASASWLDLEAREV 193 Query: 189 RIQGKGDKIRIVPL---------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239 + GKG+K R VP+ + L D P D + LF RGK L Sbjct: 194 MVLGKGNKYRTVPVGSKAAEALAAWLAARPQLARPDAAPEDAHA-----LFLSARGKRLT 248 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 Q +++ G+P H LRHSFATH+L + GDLR++Q +LGH +++TQ+YT Sbjct: 249 QRQIQIRMKRNAIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT 308 Query: 300 NVNSKNGGDWMMEIYDQTHPSITQK 324 +++ ++ + +IYDQ HP +K Sbjct: 309 SLDFQH----LAKIYDQAHPRAKKK 329 >gi|325280456|ref|YP_004252998.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712] gi|324312265|gb|ADY32818.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712] Length = 307 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 85/295 (28%), Positives = 156/295 (52%), Gaps = 15/295 (5%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 +E+ LS ++++Y D ++ LA Y +K + T +SY ++ ++ + +R Sbjct: 16 LEKSLSSNSVEAYLNDIKK----LAKYCADKHHVTTPDAISYDHLKDYLMFINEVGVTNR 71 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 + R +S I+SF K+L + + K LP L ++ ++++V ++ Sbjct: 72 TQARCISSIRSFYKFLVFDGQLENNPTKLLEAPKIGRKLPNILTTEEIDAMLNSVEMY-- 129 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 K RN AI+ +LY CGLR+SE +S+ NI Q ++I+GKG+K R++PL + Sbjct: 130 ---KPEAQRNKAIIEMLYSCGLRVSELISIKLSNINFRQGIVKIEGKGNKERMIPLSKNA 186 Query: 207 RKAILEYYDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 ++ I +Y + ++ + LF RG L+ + I+ L G+ + + HT Sbjct: 187 KQEIKQYMKVYRDYLEIEKGYEDVLFLNKRGTALSRVMVFNIIKHLATRAGIKKNVSPHT 246 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 RHSFA+HL+S G DLR++Q +LGH + TT+IYT+++ ++ + ++ HP Sbjct: 247 FRHSFASHLVSGGADLRAVQDMLGHESILTTEIYTHLDDH----YLKDTINKFHP 297 >gi|260583822|ref|ZP_05851570.1| integrase/recombinase XerC [Granulicatella elegans ATCC 700633] gi|260158448|gb|EEW93516.1| integrase/recombinase XerC [Granulicatella elegans ATCC 700633] Length = 294 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 85/294 (28%), Positives = 147/294 (50%), Gaps = 17/294 (5%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T+++Y+ D QFL+FL ++I + + +++ ++R ++ K Q+ S+ R LS Sbjct: 3 TVEAYQRDIEQFLMFL-----KEIPLTKLSEVTAVDVRIYLGKLHQQQYNRSSISRFLSS 57 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 ++SF +YL + E+ ++ K LP E + + ++ + +D Sbjct: 58 LRSFYQYLLEHDFVEENPFASISYKKGQKRLPEFFYEDEMEKFIASI-----DGNQPLDQ 112 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 RN A++ +LY G+R+SE LT Q + + + GKG K R VP+ +A+ Y Sbjct: 113 RNRALIEVLYATGMRVSELTELTLQQLDLKNGVILVIGKGSKERYVPIGDFATEALQLYL 172 Query: 215 DLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 + L + +F G P+ + + QL + GL L H LRH+FAT Sbjct: 173 EESRSSLMSQYKKEHASVFVNHLGDPITTTGVRYILNQLLQESGLQLKIHPHMLRHTFAT 232 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325 HLL+NG D++++Q +LGH LS+TQIYT+V D + + Y P Q++ Sbjct: 233 HLLNNGADMKTVQELLGHVSLSSTQIYTHVTK----DALQQNYQLYFPRAKQEE 282 >gi|305681436|ref|ZP_07404243.1| tyrosine recombinase XerD [Corynebacterium matruchotii ATCC 14266] gi|305659641|gb|EFM49141.1| tyrosine recombinase XerD [Corynebacterium matruchotii ATCC 14266] Length = 305 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 86/306 (28%), Positives = 146/306 (47%), Gaps = 18/306 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK--- 77 WL +L++E+G S TL +Y D +++ +L + + + Q++ +++ A++++ Sbjct: 9 WLTHLKVEKGYSSNTLSNYRRDLYRYVTWL-----HAVGVTDLNQVTTSQVEAYVTELRR 63 Query: 78 ----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 R + + S R+L + K+ + T ++ LP L + Sbjct: 64 GDPDRNIKPLAVSSAARALIVARGLHKFALLEGLVTTDVAADVSPPATGRHLPDVLTIAE 123 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L+D + T ID R+ A++ LLYG G RISE +LT N D+ LRI GK Sbjct: 124 VTQLIDAI--PTDDTASPIDLRDRALIELLYGTGARISEITALTVDNFHDNDGMLRITGK 181 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 G+K R+VP+ A+ +Y L RG+ L+ ++ Sbjct: 182 GNKQRLVPVGSQAMAAVDQYLVRARPVFATGASHALLLNTRGRTLSRQSAWAVLKTAAAR 241 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 + + HTLRHSFATHLL G R +Q +LGH ++TTQIYT+V+++N + + Sbjct: 242 AHITKDISPHTLRHSFATHLLEGGAGERVVQELLGHSSVTTTQIYTHVSAEN----LRQA 297 Query: 314 YDQTHP 319 + +HP Sbjct: 298 WVMSHP 303 >gi|116333414|ref|YP_794941.1| integrase [Lactobacillus brevis ATCC 367] gi|116098761|gb|ABJ63910.1| tyrosine recombinase XerD subunit [Lactobacillus brevis ATCC 367] Length = 298 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 93/308 (30%), Positives = 152/308 (49%), Gaps = 15/308 (4%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 EL + ++ L +E+GL+ ++ SY + R +LA ++ +T + + I Sbjct: 3 ELATQVADFGHYLTVEQGLAANSVTSYTQELRNLGTYLA---QQHLT--SFKDADRLTIM 57 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 A++S S+ ++S ++ F +YL + T + + N+ K + LP L Sbjct: 58 AYLSNLTATGKSRNSVIHAVSALRKFYRYLVQTHQMTTNPMANVAAPKHAEHLPAVLTVA 117 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + VD +L TK+ R+ AIL ++Y GLR+SE + L ++ + ++ G Sbjct: 118 E----VDRLLAAPDTTTKY-GLRDRAILEVMYATGLRVSELVHLKLADLHLEMGLIQTLG 172 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 KGDK RI+P+ I Y P L LF G L+ + I+Q Sbjct: 173 KGDKERIIPIGDVATDWINRYLQTSRPVLLKQRTSPYLFLNAHGGGLSRQAIWQKIKQYV 232 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 + T HTLRHSFATH+L NG DLR +Q +LGH ++TTQIYT+++ K ++ Sbjct: 233 AVAQINKDVTPHTLRHSFATHILENGADLRVVQELLGHADITTTQIYTHISKKR----LV 288 Query: 312 EIYDQTHP 319 ++YDQ HP Sbjct: 289 KVYDQYHP 296 >gi|88855485|ref|ZP_01130149.1| tyrosine recombinase [marine actinobacterium PHSC20C1] gi|88815392|gb|EAR25250.1| tyrosine recombinase [marine actinobacterium PHSC20C1] Length = 311 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 96/306 (31%), Positives = 156/306 (50%), Gaps = 20/306 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L++L IERGLS+ TL +Y D +L FL +E + + ++ ++ AF Sbjct: 18 ERFLRHLAIERGLSQNTLAAYRRDLDSYLGFL---SERDLAEPS--AITADDVAAFAHSL 72 Query: 79 RT---QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 R + + S+ R LS ++ + + ++ + K++ LP+A+ +Q Sbjct: 73 RVDPERPLAASSVARMLSTVRGLHTFFVDESLVSDDVAHKVAIPKQTMRLPKAITIEQ-- 130 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 + +VL + + + RN+A+L LLY G R+SE +L +++D +R+ GKG+ Sbjct: 131 --MSSVLASFAGD-DVVSLRNTALLELLYATGARVSEVTALNVDDMIDGD-VVRLLGKGN 186 Query: 196 KIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRY 253 K RIVP+ + AI +Y P P LF G RG L+ I+ Sbjct: 187 KQRIVPVGSFAQAAIEKYLVRSRPVLSAKGTATPALFLGARGARLSRQNVWLIIQSAAER 246 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 + L L + HT RHSFATHLLS G D+R +Q +LGH ++TTQIYT V + D + ++ Sbjct: 247 VNLGLDISPHTFRHSFATHLLSGGADVRVVQELLGHSSVATTQIYTLVTA----DTLRDM 302 Query: 314 YDQTHP 319 Y HP Sbjct: 303 YTTAHP 308 >gi|24215183|ref|NP_712664.1| integrase/recombinase XerD [Leptospira interrogans serovar Lai str. 56601] gi|45657354|ref|YP_001440.1| putative integrase/recombinase protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|34222802|sp|Q7ZAM7|XERD_LEPIN RecName: Full=Tyrosine recombinase xerD gi|73920480|sp|Q72SA5|XERD_LEPIC RecName: Full=Tyrosine recombinase xerD gi|24196257|gb|AAN49682.1| integrase/recombinase XerD [Leptospira interrogans serovar Lai str. 56601] gi|45600593|gb|AAS70077.1| putative integrase/recombinase protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 298 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 93/302 (30%), Positives = 151/302 (50%), Gaps = 16/302 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 QN+ + L +E+GLS ++ SY D +F FL EK I ++ + +I F+++ Sbjct: 10 QNFQEYLSVEKGLSDNSIYSYGYDLNKFKNFL-----EKEHIDFLK-VQADDIMRFLNEE 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + +KI +++ R + I+ F K+LK K + + + S+P L + + L Sbjct: 64 KDRKISSKTIAREVVAIRQFYKFLKDEKKLDTNPTEKIETPEVMRSIPDYLTQDEIEELF 123 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 ++ E + R+ I LLY GLRISEA +L ++ + TL ++GKG + R Sbjct: 124 ASI-----KEDNLYELRDKCIFELLYSSGLRISEACNLRLNDMDLEGMTLTVEGKGGRQR 178 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP + Y PF L LF +G +N R + + + Sbjct: 179 LVPFGEKSLDILNRYLKQSRPFILKSRNCEYLFVSKKGSYINRKSVWRLLNHYIKRTSIL 238 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T HTLRHSFATHLL N DL+S+Q +LGH ++TTQIYT++ +K + E++ + Sbjct: 239 KKVTPHTLRHSFATHLLENHADLKSVQELLGHIDIATTQIYTHMANKT----LREVHKKF 294 Query: 318 HP 319 HP Sbjct: 295 HP 296 >gi|323358629|ref|YP_004225025.1| site-specific recombinase XerD [Microbacterium testaceum StLB037] gi|323275000|dbj|BAJ75145.1| site-specific recombinase XerD [Microbacterium testaceum StLB037] Length = 309 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 99/318 (31%), Positives = 148/318 (46%), Gaps = 22/318 (6%) Query: 12 FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE--EKITIQTIRQLSYT 69 EL + + +L+++ +ERGLS T+ +Y D LA Y E + I ++ Sbjct: 1 MELERAVEGYLRHVALERGLSDHTVAAYRRD-------LAVYIEWLRGRGVDAIETVTPA 53 Query: 70 EIRAFISKRRTQKI--GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127 I F ++R + + SL R S ++ ++L + +R K LP+ Sbjct: 54 LIADFAAERASAEPPPASSSLARLQSSVRGLHRFLVLEGRVDDDPSGRLRPPKAPRRLPK 113 Query: 128 ALNEKQALTLVDNVLLHTSHETKWID----ARNSAILYLLYGCGLRISEALSLTPQNIMD 183 AL Q L+D + R+ A+L LLY G R+SE + L + + Sbjct: 114 ALTIGQVNELLDAAGPAPGSSDASVAEPAAVRDRALLELLYATGARVSEIVQLDVDDTVH 173 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLP-LFRGIRGKPLNPG 241 LR++GKGDK R+VP+ R AI Y + P P LF G+RG PL+ Sbjct: 174 GD-LLRVRGKGDKERVVPVGSYARAAIEAYLTRVRPALAAKGRATPRLFLGVRGAPLSRQ 232 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 I+ L + HTLRHSFATHLL G D+R +Q +LGH ++TTQIYT+V Sbjct: 233 SAWLIIQAAAERASLTAHVSPHTLRHSFATHLLQGGADVRVVQELLGHASVATTQIYTHV 292 Query: 302 NSKNGGDWMMEIYDQTHP 319 D + ++Y HP Sbjct: 293 TV----DALRDVYAGAHP 306 >gi|302035680|ref|YP_003796002.1| tyrosine recombinase xerC [Candidatus Nitrospira defluvii] gi|300603744|emb|CBK40076.1| Tyrosine recombinase xerC [Candidatus Nitrospira defluvii] Length = 317 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 100/308 (32%), Positives = 156/308 (50%), Gaps = 21/308 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +++ S T+++Y D QF F A ++ ++ IR F++ R Sbjct: 6 RTFLDVLAVQQNASSQTIRAYTSDLAQFHAF-ALGVQQPGGTLVPESVTPALIREFLAAR 64 Query: 79 RTQKIGDR--SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + GD+ SL R L+ ++SF +YL + + ++R K LP+ L+ Q LT Sbjct: 65 --DRTGDKKTSLARKLACLRSFFRYLVRIGQLDVNPAEDVRAPK----LPKHLS--QVLT 116 Query: 137 LVD-NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 D L+ T+ + R+ AIL LY G R+SE + + +I + +R++GKG Sbjct: 117 KDDAGALMEFPGGTERVGLRDRAILETLYSTGARVSELVGMNCDDISRSEGLVRLRGKGR 176 Query: 196 KIRIVPLLPSVRKAILEYY---DLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 K R++PL +AI Y+ P + +FR RG L R + + Sbjct: 177 KERVIPLGIIALEAIDAYHAQIQAVPGPSSGRSDAAAVFRNSRGGRLTTRTIARIVAKYS 236 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 R L + HTLRHSFATHLL G DLR+IQ +LGH LSTTQ YT++ + D ++ Sbjct: 237 RQL-TGGAVHPHTLRHSFATHLLDEGADLRAIQEMLGHASLSTTQKYTHLAT----DQLL 291 Query: 312 EIYDQTHP 319 +YD+THP Sbjct: 292 ALYDRTHP 299 >gi|227813261|ref|YP_002813270.1| tyrosine recombinase XerC [Bacillus anthracis str. CDC 684] gi|227007518|gb|ACP17261.1| tyrosine recombinase XerC [Bacillus anthracis str. CDC 684] Length = 299 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 92/311 (29%), Positives = 156/311 (50%), Gaps = 31/311 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q ++ L+IER SK T+ SY+ D F+ F+ E+ I + ++Y ++R +++ Sbjct: 8 QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDITYADVRLYLTTL 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137 +K+ +S+ R +S ++S ++L R+ + N + +L KK S+P K Sbjct: 63 HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFALASLPKKELSIP-----KFLYAE 116 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 L S + RN A+L L+Y G+R+SE ++L +I T+ + GKG K Sbjct: 117 ELEELFEASDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQ 176 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIR 248 R +P + A++ Y + N QL +F +G PL + + Sbjct: 177 RYIPFGSYAQDALITYIE------NGRKQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLN 230 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 +L + L + + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ + Sbjct: 231 ELIKKASLTMRISPHILRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 286 Query: 309 WMMEIYDQTHP 319 + +Y + HP Sbjct: 287 RLRSVYMKHHP 297 >gi|317049380|ref|YP_004117028.1| tyrosine recombinase XerD [Pantoea sp. At-9b] gi|316950997|gb|ADU70472.1| tyrosine recombinase XerD [Pantoea sp. At-9b] Length = 297 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 96/303 (31%), Positives = 155/303 (51%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L IER L++ TL SY D + +L + +T++ + +++ F+++R Sbjct: 8 EQFLDTLWIERNLAQNTLASYRQDLQTLTGWLHHHERTLLTLEAL------DLQQFLAER 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R+LS I+ +YL + K+ ++ + K LP+ L+E Q V Sbjct: 62 VEGGYKATSSARTLSAIRRLFQYLYREKLRSDDPSALLSAPKLPQRLPKDLSESQ----V 117 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + +L S E ++ R+ A+L LLY GLR+SE + LT ++ Q +R+ GKG+K R Sbjct: 118 ERLLQAPSTEIP-LELRDKAMLELLYATGLRVSELVGLTLSDVSLRQGVVRVIGKGNKER 176 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ I Y P+ LN LF R + + F I+ G+ Sbjct: 177 LVPMGEEAIYWIEHYMTHGRPWLLNGQTLDVLFPSNRAQKMTRQTFWHRIKHYALLAGID 236 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + ++ Q Sbjct: 237 SEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRLLHQQ 292 Query: 317 THP 319 HP Sbjct: 293 HHP 295 >gi|157960633|ref|YP_001500667.1| tyrosine recombinase XerD [Shewanella pealeana ATCC 700345] gi|157845633|gb|ABV86132.1| tyrosine recombinase XerD [Shewanella pealeana ATCC 700345] Length = 300 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 95/300 (31%), Positives = 150/300 (50%), Gaps = 16/300 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +L +GLS TL +Y D R +L ++ +T S +IR ++++R Sbjct: 14 FLDDLWSTKGLSDNTLSAYRTDLRHLDRYLQKQGDDLVTC------SQFDIRNYLAERFD 67 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + S R +S ++ F YL +K + + + K + LP +L+E+ +D Sbjct: 68 KGFAKTSSARMMSSLRRFYGYLIVKKQIDSDPMALIESPKLARKLPDSLSEED----IDR 123 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 +L + I++R+ A+L LLY GLR+SE + LT + + Q +RI GKG K R+V Sbjct: 124 LLAEPEQDDP-IESRDKAMLELLYATGLRVSELVGLTMEQLSLRQGLVRITGKGGKERLV 182 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 PL I Y +L Q LF R + + F I+ G+ Sbjct: 183 PLGELAITEIESYLKFARAELLKGKQSDVLFPSKRAQQMTRQTFWHRIKLYALRAGISTE 242 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + + ++ + HP Sbjct: 243 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVATAR----LASLHSEHHP 298 >gi|116494889|ref|YP_806623.1| integrase [Lactobacillus casei ATCC 334] gi|191638400|ref|YP_001987566.1| Tyrosine recombinase xerC [Lactobacillus casei BL23] gi|301066449|ref|YP_003788472.1| integrase [Lactobacillus casei str. Zhang] gi|122263693|sp|Q039E1|XERC_LACC3 RecName: Full=Tyrosine recombinase xerC gi|254799345|sp|B3WEA7|XERC_LACCB RecName: Full=Tyrosine recombinase xerC gi|116105039|gb|ABJ70181.1| tyrosine recombinase XerC subunit [Lactobacillus casei ATCC 334] gi|190712702|emb|CAQ66708.1| Tyrosine recombinase xerC [Lactobacillus casei BL23] gi|300438856|gb|ADK18622.1| Integrase [Lactobacillus casei str. Zhang] gi|327382429|gb|AEA53905.1| Site-specific recombinase [Lactobacillus casei LC2W] gi|327385628|gb|AEA57102.1| Site-specific recombinase [Lactobacillus casei BD-II] Length = 298 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 92/294 (31%), Positives = 146/294 (49%), Gaps = 14/294 (4%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 LE+ER S T+ +Y D ++F FL + R + +++ +++ Q + Sbjct: 11 LEVERQYSPETVTAYLSDLQEFQAFL----KANGGFTDFRHVDDLDVQTYLTDLNKQDLA 66 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQALTLVDNVLL 143 S+ R +S ++SF +YL + + + N + LKK + LP+ E + L V Sbjct: 67 RTSIARKISSLRSFYRYLTRIDVV-KRNPFELVELKKQHHHLPQFFYEAEIQELFKTVAG 125 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 T +D RN A+L +LYG G+R+SE LT + + + L I GKG+K R VP Sbjct: 126 KTP-----LDQRNRALLEVLYGTGIRVSECAKLTLNQVDFNTALLLIHGKGNKDRYVPFG 180 Query: 204 PSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 ++A+ Y L Q +F G+P+ + + QL + L + Sbjct: 181 QYAQQALRTYLKDGRQVLMAKSQAQHRYVFVNQYGRPITSRGIEYILDQLIKQTTLTANI 240 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 H LRHSFATH+L +G DLR++Q +LGH LSTTQIYT+V + + M+ Y Sbjct: 241 HPHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEYMKYY 294 >gi|296125451|ref|YP_003632703.1| integrase family protein [Brachyspira murdochii DSM 12563] gi|296017267|gb|ADG70504.1| integrase family protein [Brachyspira murdochii DSM 12563] Length = 310 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 92/310 (29%), Positives = 164/310 (52%), Gaps = 25/310 (8%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 LL E ++LQ L + T+ SY D +++ FL + I + S +R Sbjct: 17 LLDEFSDYLQTL----NFAAHTINSYNKDLKEYFNFLE---SKNILLDNADHYS---VRD 66 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 +++ +++ + + ++ R LS IK F KYL + ++ ++ I++M++ K+ + + L Sbjct: 67 YLTFLKSKSLTNSTMSRHLSSIKKFYKYLIRNGLSDKTRIVDMKSPKREEHIAKFL---- 122 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 +L +D +L + + R+ + +Y GLR+SE SL I TLRI GK Sbjct: 123 SLDDIDRILA-IDDDGDFTLLRDKMMALFMYAIGLRVSELASLRLSMIKKGDETLRICGK 181 Query: 194 GDKIRIVPLLPSVRK---AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 G K+R +P+LP V + +E + + + N LF GKP++ + +++L Sbjct: 182 GSKVRDIPVLPVVYENWDIYMEKRRMIQKEYSQNNDY-LFINRFGKPISDRSIRTSMKRL 240 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV-NSKNGGDW 309 R + + + HTLRH+FATHLL+N ++R +Q +LGH ++TTQ YT+V NS+ Sbjct: 241 IRNANISMDFSPHTLRHTFATHLLNNDAEIRGVQELLGHETIATTQRYTHVTNSR----- 295 Query: 310 MMEIYDQTHP 319 + E+Y++ HP Sbjct: 296 LFEVYNRFHP 305 >gi|91789051|ref|YP_550003.1| tyrosine recombinase XerD subunit [Polaromonas sp. JS666] gi|91698276|gb|ABE45105.1| tyrosine recombinase XerD subunit [Polaromonas sp. JS666] Length = 300 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 88/301 (29%), Positives = 154/301 (51%), Gaps = 14/301 (4%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++ L +E GLSK TL +Y D F +LA ++ + + T++ + S R Sbjct: 11 GFIDALWLEDGLSKNTLAAYRRDLSLFAAWLAAPAQQGRRLDDTVE---TDLNRYFSTRH 67 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 S R L+ K + ++ + ++ T L +++ K++ +P+ ++E Q Sbjct: 68 ATTKAT-SANRRLTVFKRYFRWALRERLITVDPTLKLQSAKQALRVPKVMSEAQV----- 121 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 LL E+ + R+ A+L L+Y GLR+SE + L ++ ++ LR+ GKG K R+ Sbjct: 122 EALLAAPSESTPLGQRDRAMLELMYASGLRVSELVGLKTFHVGLNEGVLRVMGKGSKERL 181 Query: 200 VPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VP R+ ++ Y + P L LF RG ++ +F +++ + G+ Sbjct: 182 VPFGQVAREWVVLYLAEARPAILGGQQTDDLFVTNRGSGMSRVMFWMLVKKYAQLAGIHS 241 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + HTLRH+FATHLL++G DLR++Q +LGH +STT IYT+V + + ++ Q H Sbjct: 242 PLSPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVARER----LKALHAQHH 297 Query: 319 P 319 P Sbjct: 298 P 298 >gi|307823075|ref|ZP_07653305.1| tyrosine recombinase XerC [Methylobacter tundripaludum SV96] gi|307735850|gb|EFO06697.1| tyrosine recombinase XerC [Methylobacter tundripaludum SV96] Length = 302 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 95/306 (31%), Positives = 162/306 (52%), Gaps = 17/306 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++ + L +E S+ T+++Y+ D L L+ Y +K I L +T+IRA I+ R Sbjct: 11 DFFKQLTVEVRASEHTVKNYQRD----LKHLSRYCTDK-PITRWADLKHTDIRAHIASRH 65 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + + +SL+R LS I+SF YL K+ T + +++ K++ LP+ L+ Q L++ Sbjct: 66 RKGLSSKSLQRELSAIRSFYNYLLKKGQTDVNPAQHIQAPKQARKLPKTLDVDQLSGLLE 125 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR 198 + + ++ R+ A+ L Y GLR+SE +L ++ STL ++ GKG K R Sbjct: 126 ------AGASSLLEIRDLAMFELFYSSGLRLSELSALDLTDLDLPDSTLTVRIGKGGKSR 179 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 ++P+ AI + + I+ LF RG L + + + + G+ Sbjct: 180 VLPVGSKAVTAIENWLQQRAVKIP-AIEPALFVSTRGTRLGQRNIELRLERWCKAKGIAE 238 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 H LRHSFA+HLL + DLR++Q +LGH +STTQIYT+++ ++ + EIYD+ H Sbjct: 239 HIHPHMLRHSFASHLLESSHDLRAVQELLGHSNISTTQIYTHLDFQH----LAEIYDKAH 294 Query: 319 PSITQK 324 P +K Sbjct: 295 PRAKKK 300 >gi|323343537|ref|ZP_08083764.1| integrase/recombinase XerD [Prevotella oralis ATCC 33269] gi|323095356|gb|EFZ37930.1| integrase/recombinase XerD [Prevotella oralis ATCC 33269] Length = 317 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 91/289 (31%), Positives = 150/289 (51%), Gaps = 20/289 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++++ L++ER S TL++Y+ D L +L Y ++ + +L ++ F + Sbjct: 15 KSYVRYLKLERNYSPHTLEAYQHD----LSWLIGYCAQQDL--NVFELKLADLERFAVQI 68 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 +G + R LSG++SF ++L + + LP L+ + L Sbjct: 69 HEHGVGPATQARILSGVRSFYRFLVLDGYIAADPTELLESPHIGEHLPEVLSAAEVDMLE 128 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D++ L +KW RN AI+ +L+ CGLR+SE ++L ++ ++ +R+ GKGDK R Sbjct: 129 DSIDL-----SKWEGQRNKAIIEMLFSCGLRVSELVNLKLSDLYIEEEYVRVLGKGDKER 183 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRY 253 +VP+ P KAI E L D NL P +F RG L + I++ Sbjct: 184 LVPISP---KAIKEL-KLWFIDRNLMQIKPGEIDFVFLNRRGSHLTRTMILIMIKRQAEA 239 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 G+ + + HTLRHSFAT LL G DLR+IQ +LGH + TT+IYT+++ Sbjct: 240 AGIRKTISPHTLRHSFATELLKGGADLRAIQEMLGHESIGTTEIYTHID 288 >gi|119026091|ref|YP_909936.1| tyrosine recombinase xerD [Bifidobacterium adolescentis ATCC 15703] gi|154488864|ref|ZP_02029713.1| hypothetical protein BIFADO_02172 [Bifidobacterium adolescentis L2-32] gi|118765675|dbj|BAF39854.1| tyrosine recombinase xerD [Bifidobacterium adolescentis ATCC 15703] gi|154083001|gb|EDN82046.1| hypothetical protein BIFADO_02172 [Bifidobacterium adolescentis L2-32] Length = 317 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 91/315 (28%), Positives = 155/315 (49%), Gaps = 27/315 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +++ERGL+K T+++Y+ D R++ +LA IQ + ++ ++ +I+ Sbjct: 11 FLAYIDVERGLAKATVRAYDSDLRKYNGWLATQG-----IQDLNAVTTQDVERYIAFLDD 65 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 RS R L+ I +F ++ + + ++ K + +LP L + +L+D Sbjct: 66 SGESARSKARRLASIHAFHRFALNEHVVSNDVAAQVKAPKGATTLPDVLTVDEVASLLDA 125 Query: 141 VLLHTSHETKWIDA---------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 + + + A R+ A+L +Y G R+SEA ++ + + R+ Sbjct: 126 IPVSQNRPQSEGMADMPDDPAMLRDKALLEFMYATGARVSEACGANLDDVDLESNVARLM 185 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRY 246 GKG K R+VP+ +AI Y L + P LF RGK L+ Sbjct: 186 GKGSKQRLVPVGSYACEAIARYLKNGRPQLESKAKGPTERRALFLNKRGKRLSRQSVWEI 245 Query: 247 IRQL--RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 IR R ++ PL HTLRHSFATHL+ G D+R++Q +LGH ++TTQIYT+V+ + Sbjct: 246 IRAAGERAHIDKPLHP--HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPE 303 Query: 305 NGGDWMMEIYDQTHP 319 N ++E Y +HP Sbjct: 304 N----LIETYLTSHP 314 >gi|163750315|ref|ZP_02157556.1| integrase/recombinase XerD [Shewanella benthica KT99] gi|161329987|gb|EDQ00972.1| integrase/recombinase XerD [Shewanella benthica KT99] Length = 308 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 94/301 (31%), Positives = 154/301 (51%), Gaps = 16/301 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +L +L RGLS TL +Y D R F ++ +K+ + Q+S IR ++ R Sbjct: 21 TFLDDLWSNRGLSDNTLAAYRTDLRHFDRYM-----QKLGGGLV-QVSQQLIRDYLDVRF 74 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + S R +S ++ F +L +K+ I +++ K + LP +L+E Sbjct: 75 DKGFARTSSARLMSSLRRFYGFLILKKLIQVDPIARIKSPKLARKLPDSLSEADV----- 129 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 ++LL+ + I+ R+ A+L LLY GLR++E +SLT + + Q +R+ GKG K R+ Sbjct: 130 DILLNEPDLQEPIECRDRAMLELLYATGLRVTELVSLTMEQLSLRQGLVRVVGKGGKERL 189 Query: 200 VPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VPL + Y + +L + LF RG+ + F I+ G+ Sbjct: 190 VPLGEIAVNEVEHYLEGARAELLKGKLSDVLFPSRRGQMMTRQTFWHRIKLYALRAGIVT 249 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + HT+RH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + +++ + H Sbjct: 250 HISPHTMRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKAR----LSQLHSEHH 305 Query: 319 P 319 P Sbjct: 306 P 306 >gi|71906177|ref|YP_283764.1| tyrosine recombinase XerD subunit [Dechloromonas aromatica RCB] gi|71845798|gb|AAZ45294.1| tyrosine recombinase XerD subunit [Dechloromonas aromatica RCB] Length = 302 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 100/296 (33%), Positives = 145/296 (48%), Gaps = 13/296 (4%) Query: 8 EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67 +I S L E N+ L +E GL+K TL SY D + ++LA E + L Sbjct: 2 KIASQADLSEIDNFCDALWLEDGLAKATLDSYRSDLSRLALWLANNASEPLL-----DLH 56 Query: 68 YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127 T + AFI+ Q S R LS ++ F ++ R L + N + + LP+ Sbjct: 57 ETTLTAFIAHLAKQTRAT-SQARYLSTLRRFYRWQLGRGRIVADPTLKLANPSRPSRLPK 115 Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 ++EKQ L+D L T + R+ A+L +Y GLR+SE ++L + Sbjct: 116 VMSEKQVEALLDAPDLDTP-----LGLRDRAMLETIYATGLRVSELVNLRLHEVSLADGV 170 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 LR GKG K R+VPL + I Y + P LN LF RG + F + Sbjct: 171 LRALGKGSKERLVPLGQLAIEWIKRYLNEARPDILNGQHSDDLFITARGGGMTRQAFWQL 230 Query: 247 IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 I++ G+ P + H LRH+FATHLL++G DLR +Q +LGH +STTQIYT+V Sbjct: 231 IKRYALIAGIAPDKLSPHVLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHV 286 >gi|251791941|ref|YP_003006661.1| site-specific tyrosine recombinase XerD [Aggregatibacter aphrophilus NJ8700] gi|247533328|gb|ACS96574.1| tyrosine recombinase XerD [Aggregatibacter aphrophilus NJ8700] Length = 297 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 93/296 (31%), Positives = 151/296 (51%), Gaps = 19/296 (6%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 IE+GLS T+QSY D +L + +T+ + +++ F+ +R Q Sbjct: 16 IEKGLSPNTVQSYRLDLTALCDWLEVHKLSLLTLDAV------DLQTFLGERLQQGYKAT 69 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R LS ++ +YL K K T+ + + K + LP+ L E+Q L++ L Sbjct: 70 STARLLSAMRKLFQYLYKEKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTDLLNVQSLEQP 129 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 ++ R+ A+L LLY GLR++E ++L +I +Q +R+ GKG+K RIVP+ Sbjct: 130 -----VELRDKAMLELLYATGLRVTELVTLGTDSINLNQGVVRVIGKGNKERIVPMGEEA 184 Query: 207 RKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ--LRRYLGLPLSTTAH 263 I +Y P L+ LF RG + F I+ +R + + + H Sbjct: 185 THWIKQYILFVRPILLDGQSSDVLFPSRRGTQMTRQTFWHRIKHYAVRAEIDSDM-LSPH 243 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LRH+FATHL+++G DLR +Q +LGH LSTTQIYT+V + + ++++ HP Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER----LKRLHERYHP 295 >gi|241667835|ref|ZP_04755413.1| site-specific recombinase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876378|ref|ZP_05249088.1| site-specific recombinase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842399|gb|EET20813.1| site-specific recombinase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 292 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 98/301 (32%), Positives = 148/301 (49%), Gaps = 20/301 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L NL +E GLS+ T+ SY D L FL Y + I L + ++ AFIS R Sbjct: 8 FLDNLWLEHGLSQNTISSYRTD----LKFLQSYFSQVELIN----LDFEQLYAFISYRSK 59 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD- 139 RS R +S ++ F +L T + + K + LP+ + E VD Sbjct: 60 NGYSSRSNARMISTLRKFYNWLISTGQATTNPTTKLTLPKLAKRLPKDMTE------VDV 113 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 LL T I R+ A+L L+Y GLR+SE + L +I + +++ GKG K RI Sbjct: 114 ERLLQAPDLTDDIGIRDKAMLELMYATGLRVSELVGLNTNDIDLNVGVIQVMGKGSKERI 173 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VP+ + + +Y++ L N + +F K + F I+ G+ Sbjct: 174 VPIGEYALEYLHKYFEESRESLAKNFKEKAVFISKHSKRITRQSFWHRIKSYALIAGINT 233 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + HTLRH+FATHLL++G DLRS+Q +LGH +STT IYT+++ + EIY + H Sbjct: 234 DISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR----LQEIYQKHH 289 Query: 319 P 319 P Sbjct: 290 P 290 >gi|90580583|ref|ZP_01236388.1| tyrosine recombinase [Vibrio angustum S14] gi|90438241|gb|EAS63427.1| tyrosine recombinase [Photobacterium angustum S14] Length = 298 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 94/303 (31%), Positives = 151/303 (49%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + +ERGLS+ TL SY D + L +L + I++ S +++ + Sbjct: 9 ERFLDAMWMERGLSENTLSSYRNDLTKLLRWLKQESRNVISV------SVDDLQRYQQWL 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S R +S I+ +YL + K+ + + K LP+ L+E Q Sbjct: 63 FDKDYKQTSRARMVSAIRRLFQYLHREKMRDDDPSAMLVTPKLPKRLPKDLSEAQV---- 118 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + LL I+ R+ A+L LLY GLR++E ++LT +NI Q +RI GKGDK R Sbjct: 119 -DALLEAPDVNDPIELRDKAMLELLYATGLRVTELVTLTMENISLRQGVVRITGKGDKER 177 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ + I ++ + P L LF R + + F I+ G+ Sbjct: 178 LVPMGENAVDWIEQFIETGRPQLLGEKSSDVLFPSRRARQMTRQTFWHRIKHYAVLAGID 237 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 T + H +RH+FATHLL+ G DLR +Q +LGH LSTTQIYT+V ++ + +++ Sbjct: 238 ADTLSPHVMRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQT 293 Query: 317 THP 319 HP Sbjct: 294 HHP 296 >gi|271499210|ref|YP_003332235.1| tyrosine recombinase XerD [Dickeya dadantii Ech586] gi|270342765|gb|ACZ75530.1| tyrosine recombinase XerD [Dickeya dadantii Ech586] Length = 299 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 94/303 (31%), Positives = 151/303 (49%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ER L++ TL SY D +LA + + Q ++++ F+++R Sbjct: 10 EQFLDALWLERNLAENTLSSYRNDLSSLAEWLAHHDRHLLEAQP------SDLQDFLAER 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K T+ + + K LP+ L E Q Sbjct: 64 LEGGYKATSSARLLSAMRRLFQYLYREKRRTDDPSAPLSSPKLPQRLPKDLTEAQV---- 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL + I+ R+ A+L LLY GLR+SE + LT ++ Q +R+ GKG+K R Sbjct: 120 -EALLAAPVTDQPIELRDKAMLELLYATGLRVSELVGLTMSDVSLRQGVVRVVGKGNKER 178 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL + +Y + P+ LN LF R + + F I+ + Sbjct: 179 LVPLGEEAVYWLEQYLEYSRPWLLNGQTLDVLFPSNRAQQMTRQTFWHRIKHYATLASID 238 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Q Sbjct: 239 SNKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQQ 294 Query: 317 THP 319 HP Sbjct: 295 HHP 297 >gi|315633750|ref|ZP_07889040.1| tyrosine recombinase XerD [Aggregatibacter segnis ATCC 33393] gi|315477792|gb|EFU68534.1| tyrosine recombinase XerD [Aggregatibacter segnis ATCC 33393] Length = 297 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 96/301 (31%), Positives = 153/301 (50%), Gaps = 17/301 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L I +GLS T+QSY D +L+ E K+++ L +++ F+ +R Sbjct: 10 FLNELWIGKGLSPNTVQSYRLDLTALCDWLS---ERKLSL---LDLDSVDLQTFLGERVE 63 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q S R LS I+ +YL + K T+ + + K + LP+ L E+Q L++ Sbjct: 64 QGYKATSTARLLSAIRKLFQYLYQEKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTDLLNV 123 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 L I+ R+ A+L LLY GLR++E +SL +I +Q +R+ GKG+K RIV Sbjct: 124 QSLEQP-----IELRDKAMLELLYATGLRVTELVSLHTDSISLNQGVVRVIGKGNKERIV 178 Query: 201 PLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ + ++ P LN LF RG + F I+ + + Sbjct: 179 PMGEEATHWVKQFMLFARPILLNGQSSDVLFPSRRGTQMTRQTFWHRIKHYAVLAEIDSN 238 Query: 260 T-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + H LRH+FATHL+++G DLR +Q +LGH LSTTQIYT+V + + ++++ H Sbjct: 239 MLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER----LKRLHERYH 294 Query: 319 P 319 P Sbjct: 295 P 295 >gi|251790996|ref|YP_003005717.1| tyrosine recombinase XerD [Dickeya zeae Ech1591] gi|247539617|gb|ACT08238.1| tyrosine recombinase XerD [Dickeya zeae Ech1591] Length = 299 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 93/303 (30%), Positives = 151/303 (49%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ER L++ TL SY D +LA + + + Q + +++ F+++R Sbjct: 10 EQFLDALWLERNLAENTLSSYRNDLCSLAEWLAHHNSDLLQAQPL------DLQGFLAER 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K + + + K LP+ L E Q Sbjct: 64 LEGGYKATSSARLLSAMRRLFQYLYREKRRADDPSAPLSSPKLPQRLPKDLTEAQV---- 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL + I+ R+ A+L LLY GLR+SE + LT ++ Q +R+ GKG+K R Sbjct: 120 -EALLAAPVTDQPIELRDKAMLELLYATGLRVSELVGLTISDVSLRQGVVRVVGKGNKER 178 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL + +Y + P+ LN LF R + + F I+ + Sbjct: 179 LVPLGEEAVYWLEQYLEFSRPWLLNGQTLDVLFPSNRAQQMTRQTFWHRIKHYATLASID 238 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Q Sbjct: 239 SNKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQQ 294 Query: 317 THP 319 HP Sbjct: 295 HHP 297 >gi|307129430|ref|YP_003881446.1| site-specific tyrosine recombinase [Dickeya dadantii 3937] gi|306526959|gb|ADM96889.1| site-specific tyrosine recombinase [Dickeya dadantii 3937] Length = 299 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 94/303 (31%), Positives = 151/303 (49%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ER L++ TL SY D R +LA + + Q ++++ F+++R Sbjct: 10 EQFLDALWLERNLAENTLSSYRNDLRSLADWLAHHDSSLLQAQP------SDLQDFLAER 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K + + + K LP+ L E Q Sbjct: 64 LEGGYKATSSARLLSAMRRLFQYLYREKQRPDDPSAPLSSPKLPQRLPKDLTEAQV---- 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL + I+ R+ A+L LLY GLR+SE + LT ++ Q +R+ GKG+K R Sbjct: 120 -EALLAAPVTDQPIELRDKAMLELLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKER 178 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL + +Y + P+ LN LF R + + F I+ + Sbjct: 179 LVPLGEEAVYWLEQYLEYSRPWLLNGQTLDVLFPSNRAQQMTRQTFWHRIKHYATLASID 238 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Q Sbjct: 239 SNKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQ 294 Query: 317 THP 319 HP Sbjct: 295 HHP 297 >gi|150397765|ref|YP_001328232.1| site-specific tyrosine recombinase XerD [Sinorhizobium medicae WSM419] gi|150029280|gb|ABR61397.1| tyrosine recombinase XerD [Sinorhizobium medicae WSM419] Length = 313 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 98/316 (31%), Positives = 157/316 (49%), Gaps = 18/316 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ + ERG + TLQSYE D R FL + + S ++R+++S Sbjct: 10 EAFLEMMSAERGAAVNTLQSYERDLRDARSFL------RSRGVGLVDASADDLRSYLSHL 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S R LS ++ F K+L + T+ + KK+ +LP+ L+ + L+ Sbjct: 64 TGEGFKSSSQARRLSALRQFYKFLYAEGLRTDEPTGILDAPKKNRALPKTLSIEDVTRLI 123 Query: 139 DNVLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 T E DA R A++ LLY G+R+SE +SL + D L I+GKG Sbjct: 124 GQA--ETEAEKGGEDAVAKLRMHALIELLYATGMRVSELVSLPASVLAQDGRFLIIRGKG 181 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRY 253 +K R+VPL + +A+ Y + + LF R L VF R ++ L Sbjct: 182 NKERLVPLSQTAIRAMRAYGQALHREADGADSPWLFPSYGRNGYLPRQVFARDLKSLAAR 241 Query: 254 LGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 G+ ++ + H LRH+FA+HLL+NG DLR++Q +LGH +STTQIYT+V + + + Sbjct: 242 AGIRVAAISPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEER----LHD 297 Query: 313 IYDQTHPSITQKDKKN 328 + HP Q K++ Sbjct: 298 LVQSHHPLAKQAKKQD 313 >gi|84502972|ref|ZP_01001074.1| tyrosine recombinase XerD [Oceanicola batsensis HTCC2597] gi|84388717|gb|EAQ01588.1| tyrosine recombinase XerD [Oceanicola batsensis HTCC2597] Length = 315 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 95/312 (30%), Positives = 156/312 (50%), Gaps = 29/312 (9%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L+ E G S+ TL +Y D + F +L + I + ++ A+++ Sbjct: 12 SFLEAQAAEAGASRNTLLAYGRDLKDFAGWL------ERQHHAIDSATRADVEAYLTDCD 65 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q + + R LS I+ ++ + +++ + +R +S LPR L + L+D Sbjct: 66 AQGLSQATRARRLSAIRQLFRFAFEEGWRSDNPAIEIRGPGRSRKLPRTLTTDEVGALLD 125 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 +E+ + RN+ ++ LLY G+R++E +SL D L I+GKG K R+ Sbjct: 126 AARTKGRNESDRL--RNTCLMELLYATGMRVTELVSLPLAAARGDPRMLLIRGKGGKERM 183 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNP-----GVFQRY-----IR 248 VPL P R+A+ + L + + LP RG R + L P G R+ I+ Sbjct: 184 VPLSPPAREALAAW--LAAREAR-DEALP--RGARPSRALFPSRSAEGHLTRHRFYILIK 238 Query: 249 QLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 ++ G+ P T HTLRH+FATHLL NG DLR+IQ++LGH L+TT+IYT+V Sbjct: 239 EIALAAGVSPAKVTPHTLRHAFATHLLENGADLRAIQTLLGHADLATTEIYTHVLEHR-- 296 Query: 308 DWMMEIYDQTHP 319 + E+ + HP Sbjct: 297 --LRELVETHHP 306 >gi|73662825|ref|YP_301606.1| integrase recombinase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|82582337|sp|Q49X37|XERC_STAS1 RecName: Full=Tyrosine recombinase xerC gi|72495340|dbj|BAE18661.1| putative integrase recombinase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 296 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 95/308 (30%), Positives = 160/308 (51%), Gaps = 24/308 (7%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 K +Q +L L++E+ S+ TL+SY D QF +FLA +E + + Y + R ++ Sbjct: 3 KIQQAYLYMLKVEKQFSEHTLKSYHDDLEQFNVFLA---QEHLDLNA---FEYKDARNYL 56 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 S ++ + S+ R +S ++SF +Y + + + + + KK + LP E++ Sbjct: 57 SYLYSKNLKRTSVSRKISTLRSFYEYWMTQDEAVVNPFIQLVHPKKEHYLPHFFYEEEME 116 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L D V + K + R+ IL LLY G+R+SE + + Q+I +++ GKG Sbjct: 117 ALFDTV---ENDAKKGL--RDRVILELLYSTGIRVSELVHIKEQDIDMTSPGVKVLGKGG 171 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNP-GVFQRYIRQ--LR 251 K R +P ++++ Y L F LN L ++G P+ GV RY+ ++ Sbjct: 172 KERFIPFGEFCKQSMERY--LASFKPKLNSNHDYLLVNMKGDPITERGV--RYVLNDVVK 227 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 R G+ H LRH+FATH+L+ G DLR++QS+LGH LSTT YT+V + + + Sbjct: 228 RTAGVT-EIHPHKLRHTFATHMLNQGADLRTVQSLLGHVNLSTTGRYTHVTN----EQLR 282 Query: 312 EIYDQTHP 319 ++Y HP Sbjct: 283 KVYLNAHP 290 >gi|84393959|ref|ZP_00992699.1| tyrosine recombinase [Vibrio splendidus 12B01] gi|84375403|gb|EAP92310.1| tyrosine recombinase [Vibrio splendidus 12B01] Length = 304 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 99/305 (32%), Positives = 154/305 (50%), Gaps = 21/305 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF--YTEEKITIQTIRQLSYTEIRAFIS 76 + +L + +ERGLS+ TL SY D + L ++ Y + I++ ++ Y A Sbjct: 15 EQFLDAMWMERGLSENTLVSYRTDLSKLLTWMEKNNYRLDFISLSGLQ--DYQGWLADAD 72 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 ++T + R LS I+ +YL + K+ + + + K LP+ L+E+Q Sbjct: 73 FKQTSR------ARMLSAIRRLFQYLHREKVRGDDPSALLISPKLPQRLPKDLSEEQV-- 124 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 N LL I+ R+ A+L LLY GLR++E +SLT +NI Q +R+ GKG K Sbjct: 125 ---NALLEAPDPNDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGGK 181 Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 R+VP+ + I + + P L N +F R K + F I+ G Sbjct: 182 ERLVPMGENAVDWIETFIEQGRPQLLGENSSDVVFPSKRAKQMTRQTFWYRIKHYSVVAG 241 Query: 256 LPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 + + H LRH+FATHLL+ G DLR +Q +LGH LSTTQIYT+V ++ + +I+ Sbjct: 242 IDTELLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIH 297 Query: 315 DQTHP 319 Q HP Sbjct: 298 AQHHP 302 >gi|325106888|ref|YP_004267956.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM 5305] gi|324967156|gb|ADY57934.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM 5305] Length = 315 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 91/297 (30%), Positives = 153/297 (51%), Gaps = 17/297 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L E G+++ ++++Y D QFL +L +K +R+L+ ++ A++ + + Sbjct: 32 LRAECGMAENSVKAYIRDLEQFLDWL-----KKKHWHDVRELTLQQLTAYLKHLHDEGLK 86 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 ++ R L +K+F ++L + T+S + + K LP+ L+ ++ VD +L Sbjct: 87 ASTVARKLVALKTFFRFLVLEGVITDSKAELLNSPKLWQYLPKVLSPEK----VDALLTA 142 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 S E ++ R+ AIL +LY G R SE LT + D+ + +GKG+K RIV L P Sbjct: 143 PSWEDEFPH-RDRAILSVLYATGCRASEVTDLTLDQVRLDEGYCKCRGKGNKERIVSLNP 201 Query: 205 SVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 V A LE Y P + Q LF G+PL+ R +++ +G + Sbjct: 202 -VAIAALETYLQRERPALAARHEQTHLFLSRTGRPLDRLTIWRIVKRYAARIGCSAQVSP 260 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HTLRHSFATH+L+ G ++R++Q +LGH + TTQ+YT+V + I+ HP Sbjct: 261 HTLRHSFATHMLAGGAEIRALQEMLGHANIRTTQVYTHVEHSR----LKSIHRDCHP 313 >gi|326315550|ref|YP_004233222.1| integrase family protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372386|gb|ADX44655.1| integrase family protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 326 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 94/318 (29%), Positives = 155/318 (48%), Gaps = 26/318 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+++ +E+ L++ T+ Y D L LA + + QL IR F+++ Sbjct: 18 YLEHVRVEKRLAQRTVTLYTLD----LAKLAASARDAGV--PLLQLQTAHIRRFVAQMHA 71 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 G R + LSG + F + ++ + + + +R + LP+AL A+ L + Sbjct: 72 GGRGGRGIALILSGWRGFFTWAARQGLVPHNPVQGVRAPRAPKPLPKALGVDDAVRLAE- 130 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR----------- 189 +S W++AR++A++ LLYGCGLR+ E L D Q R Sbjct: 131 -FEGSSGSDPWLEARDAAMVELLYGCGLRVGELAGLDAVPGPDTQRQGRGWIDLQAAEAH 189 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYD--LCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRY 246 + GKG K R VP+ + A+ + + L PF + LF G RG L Sbjct: 190 VFGKGSKRRSVPVGSAALAALRAWLEVRLQPFGAASGRADAALFLGRRGARLTGQSIWSR 249 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 +RQ + GL H LRHSFA+HLL + GDLR++Q +LGH ++TTQ+YT ++ ++ Sbjct: 250 LRQRSQLAGLSTPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTRLDFQH- 308 Query: 307 GDWMMEIYDQTHPSITQK 324 + ++YD +HP +K Sbjct: 309 ---LAKVYDASHPRARRK 323 >gi|28378506|ref|NP_785398.1| integrase/recombinase [Lactobacillus plantarum WCFS1] gi|254556720|ref|YP_003063137.1| integrase/recombinase [Lactobacillus plantarum JDM1] gi|300767452|ref|ZP_07077364.1| tyrosine recombinase XerC [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180663|ref|YP_003924791.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum ST-III] gi|28271342|emb|CAD64247.1| integrase/recombinase [Lactobacillus plantarum WCFS1] gi|254045647|gb|ACT62440.1| integrase/recombinase [Lactobacillus plantarum JDM1] gi|300495271|gb|EFK30427.1| tyrosine recombinase XerC [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046154|gb|ADN98697.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 314 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 91/310 (29%), Positives = 150/310 (48%), Gaps = 15/310 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ + +ER S+ T +Y D + F FL K + R ++ ++S Sbjct: 9 FLKYIRVERQYSEETAAAYREDIQAFNDFLTANGGAKAYTEVDR----LDVNVYLSHLYD 64 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + S+ R +S ++SF +L K + + + ++ K + LPR +K+ L Sbjct: 65 RHLTRNSIARKVSSLRSFYNFLVKNDLAKLNPFVYVQLKKHAARLPRFFYQKELDVLFQT 124 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 V S + ARN+A+L +LYG G+R+SE + L ++ D + I+GKGDK R V Sbjct: 125 VYADDS----VMGARNAALLEVLYGTGIRLSECVDLQLADVDYDLKMMLIRGKGDKERYV 180 Query: 201 PLLPSVRKAILEYYDLC--PFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 P A+ Y +C P +F G P+ G + + Q+ + L Sbjct: 181 PFGRYAATALQHYETVCRQPVMAKYGQTHQTVFINRHGGPITGGGIEYVLNQIVKKSSLT 240 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 H LRH+FAT +L+NG DLR++Q +LGH LSTTQIY +V ++ + + Y Q Sbjct: 241 ADIHPHMLRHTFATQMLNNGADLRTVQELLGHTSLSTTQIYAHVTKEH----LQQDYRQF 296 Query: 318 HPSITQKDKK 327 P T++ K Sbjct: 297 FPRATRESTK 306 >gi|327441062|dbj|BAK17427.1| site-specific recombinase XerD [Solibacillus silvestris StLB046] Length = 299 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 86/300 (28%), Positives = 151/300 (50%), Gaps = 15/300 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +++ +++E+ S T++ Y D +F FL IQ I ++ Y R +++K Sbjct: 12 FIRYVQLEKNFSLHTVREYTSDLEEFFAFL-----HAEGIQKIAEVEYIHARLYVTKLYD 66 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 ++ S+ R +S I+SF ++L + + ++ ++ + KK LP E++ L + Sbjct: 67 EQKARTSISRKISSIRSFFRFLNREQNIDDAPFRSLYHPKKEERLPSFFYEEELKELFE- 125 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + I RN A+L LLY G+R+SE +SL +I + +R+ GKG K RI+ Sbjct: 126 ----KNEGDDPIQIRNMALLELLYATGMRVSECVSLELTDIDFHYNIVRVMGKGRKERII 181 Query: 201 PLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P A++ Y + P + +F +RG L + + ++ + Sbjct: 182 PFGQYAHDALIRYIKQVRPTLMKKENHQKVFVNMRGGELTTRGVRYILSEMIDNASMHTK 241 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRH+FATHLL+NG D+R++Q +LGH LS+TQIYT+V + + + Y +HP Sbjct: 242 IYPHMLRHTFATHLLNNGADMRTVQELLGHANLSSTQIYTHVTK----EALRKTYMNSHP 297 >gi|301063083|ref|ZP_07203644.1| tyrosine recombinase XerD [delta proteobacterium NaphS2] gi|300442803|gb|EFK07007.1| tyrosine recombinase XerD [delta proteobacterium NaphS2] Length = 293 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 100/309 (32%), Positives = 156/309 (50%), Gaps = 20/309 (6%) Query: 12 FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71 ++L+ E ++ L +ERGL++ T+ +Y +R + F+A+ IT S T I Sbjct: 2 YDLIDE---FITYLRVERGLAENTVHAY---SRDLIRFVAYLENRNITPV---DCSRTAI 52 Query: 72 RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131 R ++ T ++ RS R++S IK+F ++L E+ + + LP L+ Sbjct: 53 RDYLGTL-THELSKRSRARNVSAIKTFYRFLVSEGKMEENPARLVETPRIQQKLPDILSV 111 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 + V+ +LL T I R+ A+L LLY GLR+SE + L ++ + ++ Sbjct: 112 DE----VERLLLQPDGATP-IGQRDRAMLELLYATGLRVSELVRLRLLDVNMEAGFVKAL 166 Query: 192 GKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 GKG K R+VP R+A+ Y D P L LF RGKPL F + I+ Sbjct: 167 GKGSKERMVPFGEKARQALKTYLSDGRPALLKEGHPPYLFLNFRGKPLTRQGFWKIIKNH 226 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ + H LRHSFA+HLL G DLRS+Q +LGH ++TTQIYT+V + + Sbjct: 227 GIMAGIKKNIKPHGLRHSFASHLLEAGADLRSVQLMLGHADITTTQIYTHVTRER----L 282 Query: 311 MEIYDQTHP 319 E++ HP Sbjct: 283 KELHGTCHP 291 >gi|258593730|emb|CBE70071.1| Tyrosine recombinase xerD [NC10 bacterium 'Dutch sediment'] Length = 295 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 89/302 (29%), Positives = 155/302 (51%), Gaps = 15/302 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L+ L +E+GL++ +L +Y D R+ + + ++ + + R++S ++ + Sbjct: 6 EDYLRYLAVEKGLAENSLAAYGRDLRRIVGYF-----KQGGVGSFREVSRGQVARLLLTL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + R++ R S ++ +YL + E ++ + LP L++++ L+ Sbjct: 61 REAGLAPRTVSRHTSSLRGLYRYLLTQDHVKEDPTAHLESSSPWVRLPGVLSQEEVERLL 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L TS+ + R+ A+L LLY GLR+SE ++L + + + QGKG K R Sbjct: 121 AAPL--TSNP---LGLRDKAMLELLYAAGLRVSEMVTLRLSEVDLEVGYVHCQGKGGKDR 175 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL + A+ Y + P+ LF G PL F + +R G+ Sbjct: 176 VVPLGRDAQTAVRRYLETSRPYLQRGWSSSTLFLNRFGYPLTRQGFWKLLRAYAIAAGID 235 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T HTLRHSFATHLL G DLR++Q +LGH +STTQIYT+V+ + + +Y++ Sbjct: 236 RRVTPHTLRHSFATHLLERGADLRAVQMMLGHADISTTQIYTHVSRAH----LKTVYNRY 291 Query: 318 HP 319 HP Sbjct: 292 HP 293 >gi|78357014|ref|YP_388463.1| tyrosine recombinase XerD subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219419|gb|ABB38768.1| tyrosine recombinase XerD subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 309 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 98/304 (32%), Positives = 155/304 (50%), Gaps = 24/304 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE--EKITIQTIRQLSYTEIRAFISK 77 ++LQ+L I RGLS+ TL SY D + FL FL E +T Q++ +I Sbjct: 20 SFLQHLLISRGLSENTLSSYGTDLQSFLDFLHHKKSRLEDVTDQSLL--------LYIMH 71 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 R + + +SL R L+ ++ +Y ++ + +E+ + N K SLP L++++ Sbjct: 72 LRRRGLSSKSLARQLAALRGLFRYGTEQNLLSENPCRFLENPKIPKSLPEYLSQQE---- 127 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 + VL + K + R+ +L LLY GLR+SE ++L P + +R+ GKG K Sbjct: 128 IAEVLAQPDLKEK-LGFRDRTMLELLYAAGLRVSELITLKPLDFDPLTGLVRVFGKGAKE 186 Query: 198 RIVPLLPSVRKAILEYY-DLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 R VP+ + + + Y D P F NI LF GK L + +R+ G Sbjct: 187 RTVPVHATAARFLGAYLRDWRPAFKPVENI---LFLNRSGKGLTRQAVWKIVRRHVADAG 243 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + HT RHSFATHLL G DLR++Q +LGH ++ T+IYT+V ++ + I+ Sbjct: 244 IHRQISPHTFRHSFATHLLEGGADLRTVQLLLGHADIAATEIYTHVETER----LRRIHK 299 Query: 316 QTHP 319 Q HP Sbjct: 300 QFHP 303 >gi|317485554|ref|ZP_07944431.1| tyrosine recombinase XerD [Bilophila wadsworthia 3_1_6] gi|316923234|gb|EFV44443.1| tyrosine recombinase XerD [Bilophila wadsworthia 3_1_6] Length = 336 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 101/312 (32%), Positives = 153/312 (49%), Gaps = 42/312 (13%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL L ERGLS+ T+ +Y RQ L L + +E T + L I FI+ R Sbjct: 34 WLDGLIAERGLSRNTVAAY----RQDLDALQDFLDELET--PLSGLDDENITLFIAWLRK 87 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + R+L R +S ++SFL + +R + + K + LP L + + + L Sbjct: 88 RGDATRTLARRISSLRSFLAWCVERGELASNPAALIDTPKLPSLLPDVLTQDEIVRL--- 144 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 L+ T + R+ A+L LLY G+R+SE + L P ++ + +RI GKG K R+V Sbjct: 145 --LNAPDATSKLGLRDRAMLELLYAAGMRVSELIELQPIDLDLQRGVVRIFGKGSKERLV 202 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----------QRYIRQL 250 PL + + EY L I PLF P+ VF Q + + Sbjct: 203 PLHDAAVMRMAEY---------LKIVRPLF-----TPVEDRVFLNRSGNGLSRQGVWKLV 248 Query: 251 RRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 +RY G+ + HT RHSFATHLL G DLRS+Q +LGH +S T++YT+V S+ Sbjct: 249 KRYALEAGIRKPISPHTFRHSFATHLLEGGADLRSVQILLGHADMSATELYTHVQSER-- 306 Query: 308 DWMMEIYDQTHP 319 +++I+ + HP Sbjct: 307 --LLQIHRKYHP 316 >gi|298370045|ref|ZP_06981361.1| tyrosine recombinase XerC [Neisseria sp. oral taxon 014 str. F0314] gi|298281505|gb|EFI22994.1| tyrosine recombinase XerC [Neisseria sp. oral taxon 014 str. F0314] Length = 300 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 88/297 (29%), Positives = 144/297 (48%), Gaps = 17/297 (5%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87 + G S T+++Y D Q L E +R+ + A + K + + +RS Sbjct: 19 QEGKSAHTVEAYRRDLSQLERLLMLRPSENGA--DVRRGDFL---AALKKLSQRNLSERS 73 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 + R LS + + +L +R + N++ K LP+A+ ++ N LL+ Sbjct: 74 MARKLSVWRQYCGWLVQRGLMAADPTANLKAPKPPQRLPKAVQQEPL-----NHLLNQGC 128 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207 + R+ A+ LLYG GLR+SE L +++ D+ + + GKG K R VPL VR Sbjct: 129 GEDALALRDRAVFELLYGSGLRLSEVCGLNLHDVLPDEGWVGVTGKGGKQRRVPL---VR 185 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 K+I D P + + LF G+ L Q+ ++Q G + H LRH Sbjct: 186 KSIDALLDYLPHRVAAEGEAALFTNKNGRRLGQRQIQKRLQQWAAEQGSAQHLSPHMLRH 245 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 S+A+HLL D+R++Q +LGH LSTTQIYT ++ ++ + +YD+ HP +K Sbjct: 246 SYASHLLQASRDIRAVQELLGHSNLSTTQIYTKLDLEH----LAAVYDEAHPRAKRK 298 >gi|315500433|ref|YP_004089236.1| integrase family protein [Asticcacaulis excentricus CB 48] gi|315418445|gb|ADU15085.1| integrase family protein [Asticcacaulis excentricus CB 48] Length = 304 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 86/308 (27%), Positives = 145/308 (47%), Gaps = 28/308 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 + + L +ER S T ++Y D L I + L+ +I F + Sbjct: 9 FFEMLSVERNASPRTREAYGHD------LLDLRNHAGIDADGLLTLNEGDIAGFFAALDA 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + +L+R + ++ F ++ + ++ + KK LP+ L+ ++ L+ Sbjct: 63 RGLASSTLQRKRAAVRQFYRFCVREGLSDNDPSRKIAAAKKGRPLPKILSRQEVDALIAA 122 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 +H+ R ++ + Y G+R+SE ++L + D + L ++GKG R+V Sbjct: 123 ADAKDAHQAT----RLQCLIEIAYASGMRVSEIVALRLDAVQKDPAYLIVKGKGGTERLV 178 Query: 201 PLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 PL PS R AI +Y D+ P LN N L RG G + +R + QL L Sbjct: 179 PLNPSARAAIKDYLDIRPLFLNAKDKANPYLFCSRGAEGH-----LTRRRVGQLLDEAAL 233 Query: 257 -----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 P + H LRH+FATHLL G DLR +Q++LGH +STTQ+YT+V ++ + Sbjct: 234 EAGIDPARVSPHVLRHAFATHLLEGGADLRVVQTLLGHADISTTQVYTHVATER----LK 289 Query: 312 EIYDQTHP 319 E+ + HP Sbjct: 290 EVVETHHP 297 >gi|293400524|ref|ZP_06644669.1| integrase/recombinase XerC [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305550|gb|EFE46794.1| integrase/recombinase XerC [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 305 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 90/302 (29%), Positives = 150/302 (49%), Gaps = 14/302 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-- 78 +L L+ S T +Y+ D +FL FL +E +++ + ++ + + +R Sbjct: 8 FLDYLDTVNSGSAHTKDAYQRDITEFLDFLK--SENIMSLDDVDRIIVMNYVSHLRERDG 65 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + + ++ R LS ++S+ +YL + + L + K++ +P L + + Sbjct: 66 RQGTMKNATVARKLSSLRSYYRYLNEYVGVQNNPFLYFKAPKQTRRIPEFLFYDEIALFL 125 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + LH + +D R+ A+ L+Y GLR+SEA++L +I + L I GKGDK R Sbjct: 126 ASFDLHEA-----VDVRDRALFELMYASGLRVSEAVNLRLSDIDFHDNILHIIGKGDKQR 180 Query: 199 IVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP ++ +++Y + + P +N +F +GKPL Q + + L Sbjct: 181 LVPFYDLAKERLVDYIEHVRPKWVNTLQHEYVFVNQKGKPLTSRGVQYRMELAAKKCHLH 240 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 L H RHSFATHLL NG DLR +Q +LGH LSTTQIY +V D + Y+ Sbjct: 241 LHIHPHMFRHSFATHLLDNGADLRVVQELLGHASLSTTQIYVHVTQ----DRLKSAYEHA 296 Query: 318 HP 319 HP Sbjct: 297 HP 298 >gi|189219127|ref|YP_001939768.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4] gi|189185985|gb|ACD83170.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4] Length = 315 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 101/310 (32%), Positives = 165/310 (53%), Gaps = 25/310 (8%) Query: 19 QNWLQNLEIERGLSKLTLQ-SYECDT----RQFL-IFLAFYTEEKITIQTIRQLSYTEIR 72 Q+W + IE+ L+ L ++ S+ +T RQ L FL + K++I ++R + I Sbjct: 8 QSWQKT--IEKALAFLAIERSHAINTQLLYRQILEKFLDWVLSHKLSIGSVRS---SHIE 62 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKSNS-LPRALN 130 F+ + R + + D S+K ++ ++ +YLK++ KI T N L+ + L S LP+ L Sbjct: 63 LFLDEERKRGLSDSSIKITIIALRHLFEYLKEQNKIKT--NPLDHKELPSIQSRLPQFLT 120 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 K+ L+ T + R+ AIL LLY GLR+SE +SL ++ + +++ Sbjct: 121 TKEIEKLLQAPFPDTP-----LGWRDKAILELLYSSGLRVSELISLKLESYYPEHFQIKV 175 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 GKG+K R VP+ ++A+ +Y L + +F RG+PL ++ I Sbjct: 176 LGKGNKERAVPIGKCAKEALDKYIAEGRTKLLAKKTRGEVFLNQRGQPLTRSRIRQLIIH 235 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 R G+ H LRH+FA+HL+ NG DLR IQ +LGH ++TTQIYT+VN K+ Sbjct: 236 YARLGGIDKKVYPHLLRHTFASHLVENGADLRVIQELLGHANIATTQIYTHVNLKH---- 291 Query: 310 MMEIYDQTHP 319 + EI+ + HP Sbjct: 292 LKEIHRRCHP 301 >gi|304385052|ref|ZP_07367398.1| tyrosine recombinase XerD [Pediococcus acidilactici DSM 20284] gi|304329246|gb|EFL96466.1| tyrosine recombinase XerD [Pediococcus acidilactici DSM 20284] Length = 296 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 95/303 (31%), Positives = 154/303 (50%), Gaps = 19/303 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L L++ERGLS T+ SY + R FL ++ I I+ + I ++ + Sbjct: 8 DYLHALKVERGLSDNTIVSYRQELRHLQNFL-----QEQHIADIKDVDRYTILNYLDALK 62 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 S ++S ++ F KYL + ++N+ K++ LP L ++ Sbjct: 63 QTGRARSSSIHTISSLRKFFKYLLLNDQIQTNPMVNIDPPKRAQHLPSVLTTEEV----- 117 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 LL +K + R+ AIL ++Y GLR+SE ++L + + + GKG+K RI Sbjct: 118 ERLLKVPDTSKPLGIRDRAILEVMYATGLRVSELIALNLNELHLEMGLIETVGKGNKQRI 177 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLN-PGVFQRYIRQLRRYLGL 256 +P+ V LE Y P L + +F G PL GV++ Q+++ G+ Sbjct: 178 IPI-GDVAIQWLERYINGPRRALLGAKRYNEIFLNQHGHPLTRQGVWKNLKAQVQK-AGI 235 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + T HTLRHSFATHLL NG DLR +Q +LGH +STTQIYT++ + ++++YD+ Sbjct: 236 KKNITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITQQR----LVDVYDK 291 Query: 317 THP 319 HP Sbjct: 292 YHP 294 >gi|255326004|ref|ZP_05367092.1| tyrosine recombinase XerC [Rothia mucilaginosa ATCC 25296] gi|255296895|gb|EET76224.1| tyrosine recombinase XerC [Rothia mucilaginosa ATCC 25296] Length = 358 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 99/332 (29%), Positives = 166/332 (50%), Gaps = 27/332 (8%) Query: 1 MEGNNLPEI---VSFELLKERQNWLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEE 56 +E + LPE VS E+ + + + L E+ S+ T++SY D F ++A Sbjct: 39 VESSALPESALGVSGEVFRPVLDRFERFLRYEKHRSEETIRSYISDLEGFFGYMA----- 93 Query: 57 KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116 + ++ + + + IR ++ ++ ++ R S +++F + ++ ++ + M Sbjct: 94 RRGVRHLDSIDASPIREWLGSLHLRQAARSTVARRGSTLRTFFTWAQEEELVHANPTRGM 153 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS------AILYLLYGCGLRI 170 R K+ N LP L+ +Q N LL T E + D R++ A++ +LY G+RI Sbjct: 154 RTPKRENHLPPVLSREQM-----NQLLTTLQERRAQDPRDARLLRLEAVVEVLYASGMRI 208 Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQ--L 227 SE L Q++ T+R+ GKG+K R+VPL KA+ + P + Q Sbjct: 209 SELTGLDLQSVDRANKTVRVLGKGNKERVVPLGTPALKALNRWVSYGRPQWIPEGAQGVT 268 Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 LF G RG N + + +L R + ++ AH LRHS ATHL+ G D+RS+Q +L Sbjct: 269 ALFIGPRGGRANARQIREDLTRLLRTVENTQASGAHVLRHSAATHLVDGGADIRSVQELL 328 Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 GH L+TTQIYT+V+ K + E Y + HP Sbjct: 329 GHSSLATTQIYTHVSMKR----LAETYARAHP 356 >gi|255689937|ref|ZP_05413612.1| tyrosine recombinase XerD [Bacteroides finegoldii DSM 17565] gi|260624543|gb|EEX47414.1| tyrosine recombinase XerD [Bacteroides finegoldii DSM 17565] Length = 319 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 92/286 (32%), Positives = 157/286 (54%), Gaps = 13/286 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + Q L++E+ LS TL++Y D + L FL T E I I + +++ F + Sbjct: 18 RKYQQYLKLEKSLSPNTLEAYLTDLDKLLSFL---TLEGINILDV---CLADLQRFAAGL 71 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 I RS R LSGIKSF ++L I + + L +S ++ L E + + Sbjct: 72 HDIGIHPRSQARILSGIKSFFRFL----IMADYLEADPSELLESPNIGLKLPEVLTVEEI 127 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D ++ T +K RN AIL LY CGLR+SE ++L ++ D+ ++++GKG+K R Sbjct: 128 DRIIA-TVDRSKAEGQRNRAILETLYSCGLRVSELVNLKLSDLYFDEGFIKVEGKGNKQR 186 Query: 199 IVPLLP-SVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGL 256 ++P+ P ++ + L + D ++ + +F +R GK L+ + I++L + + Sbjct: 187 LIPISPRAINEIKLYFTDRNQIEVKSGHEDFVFISLRRGKRLSRIMIFHMIKELAQQASI 246 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ Sbjct: 247 TKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHID 292 >gi|331701475|ref|YP_004398434.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929] gi|329128818|gb|AEB73371.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929] Length = 314 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 92/290 (31%), Positives = 149/290 (51%), Gaps = 11/290 (3%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 K Q +L+ L+ +R S T+Q+Y+ +F FLA E+ + + Q+ ++ AF+ Sbjct: 9 KNIQWFLKYLQSDRHYSTDTIQAYQQAIAEFTRFLAEIPSER---KPLTQVDSFDVEAFL 65 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQA 134 S +K S+ + +S +KSF +L K + +N +LK ++ LPR L + + Sbjct: 66 SDLYERKYARNSIAQKVSALKSFYAFLVKNTVIA-NNPFEYVHLKSNHRRLPRFLYQNEM 124 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 L + +H+ + R++A+L LY G+R+SE + +I D T+ + GKG Sbjct: 125 RALFQGARQNPNHQ---LGLRDTAVLETLYATGIRVSECAGIQLNDIDLDNRTILVTGKG 181 Query: 195 DKIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLR 251 +K R VP ++AI Y P + P LF G+PL + + Q+ Sbjct: 182 NKQRYVPFGEYAQEAIETYLSDARSPIMAKYHQDHPFLFVNHYGRPLTSRGIEYLMDQIV 241 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + L H LRH+FAT +L+NG D+RS+Q +LGH LSTTQIYT+V Sbjct: 242 KQSSLTTKIHPHMLRHTFATEMLNNGADMRSVQELLGHSSLSTTQIYTHV 291 >gi|224476375|ref|YP_002633981.1| putative site-specific recombinase XerC [Staphylococcus carnosus subsp. carnosus TM300] gi|254799358|sp|B9DPG4|XERC_STACT RecName: Full=Tyrosine recombinase xerC gi|222420982|emb|CAL27796.1| putative site-specific recombinase XerC [Staphylococcus carnosus subsp. carnosus TM300] Length = 296 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 93/307 (30%), Positives = 163/307 (53%), Gaps = 22/307 (7%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 K ++++L L++ER SK TL+SY D QF FL E + +++ Y + R ++ Sbjct: 3 KIQESFLYMLKVERFFSKHTLKSYHDDLVQFNAFLE---HEHLKLKS---FEYKDARNYL 56 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 S ++ + ++ R +S ++SF ++ + T + + + + KK LP E++ Sbjct: 57 SFLYSKGLKRTTVSRKISTLRSFYEFWMTQDDTVVNPFVQLVHPKKEQYLPHFFYEEEM- 115 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 + L T R+ IL LLYG G+R+SE +++ +++ + +++ GKG+ Sbjct: 116 ----SALFETVEADGHKGLRDRVILELLYGTGIRVSELVNIKLEDLDLNSPGVKVLGKGN 171 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQ--LRR 252 K R +P R++I Y +L P N+ L I G+P+ GV RY+ ++R Sbjct: 172 KERFIPFGNMCRESIERYLELFPPIQNVKHDY-LLVNINGRPITERGV--RYVLNDIVKR 228 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 G+ H LRH+FATH+L+ G DLR++QS+LGH LSTT YT+V+++ + + Sbjct: 229 TAGVT-DIHPHKLRHTFATHMLNEGADLRTVQSLLGHVNLSTTGRYTHVSNQQ----LRK 283 Query: 313 IYDQTHP 319 +Y HP Sbjct: 284 VYLNAHP 290 >gi|225021521|ref|ZP_03710713.1| hypothetical protein CORMATOL_01542 [Corynebacterium matruchotii ATCC 33806] gi|224945903|gb|EEG27112.1| hypothetical protein CORMATOL_01542 [Corynebacterium matruchotii ATCC 33806] Length = 305 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 86/306 (28%), Positives = 146/306 (47%), Gaps = 18/306 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK--- 77 WL +L++E+G S TL +Y D +++ +L + + + Q++ +++ A++++ Sbjct: 9 WLTHLKVEKGYSSNTLSNYRRDLYRYVTWL-----HAVGVTDLNQVTTSQVEAYVTELRR 63 Query: 78 ----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 R + + S R+L + K+ + T ++ LP L + Sbjct: 64 GDPDRNIKPLAVSSAARALIVARGLHKFALLEGLVTTDVAADVSPPATGRHLPDVLTIAE 123 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L+D + T ID R+ A++ LLYG G RISE +LT N D+ LRI GK Sbjct: 124 ITQLIDAI--PTDDTASPIDLRDRALIELLYGTGARISEITALTVDNFHDNDGMLRITGK 181 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 G+K R+VP+ A+ +Y L RG+ L+ ++ Sbjct: 182 GNKQRLVPVGSQAMAAVDQYLVRARPVFATGASHALLLNTRGRTLSRQSAWAVLKTAAAR 241 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 + + HTLRHSFATHLL G R +Q +LGH ++TTQIYT+V+++N + + Sbjct: 242 AHITKDISPHTLRHSFATHLLEGGAGERVVQELLGHSSVTTTQIYTHVSAEN----LRQA 297 Query: 314 YDQTHP 319 + +HP Sbjct: 298 WVMSHP 303 >gi|313202049|ref|YP_004040707.1| tyrosine recombinase xerd [Methylovorus sp. MP688] gi|312441365|gb|ADQ85471.1| tyrosine recombinase XerD [Methylovorus sp. MP688] Length = 298 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 94/302 (31%), Positives = 157/302 (51%), Gaps = 18/302 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +++ +L +E GL++ TL+SY D F +L ++E + Q + AF R Sbjct: 11 SFVDHLWLEDGLARNTLESYRRDLALFAEWL--WSEHAKLLNQADQGDLQQYLAF----R 64 Query: 80 TQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 RS+ R ++ ++ F +Y L++ +I+ + +L + K SLP++LNE + + L Sbjct: 65 FPTSKPRSVSRLIASLRRFYRYGLREGQISVDPTLL-IDTPKLPRSLPKSLNEDEVVAL- 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L+ + I R+ A+L LY CGLR+SE + L + ++ +R+ GKG K R Sbjct: 123 ----LNAPDIAQAIGLRDRAMLETLYACGLRVSELVGLRYTEVSLNEGVVRVTGKGSKTR 178 Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL +L Y + P L + LF RG+ + F I++ G+ Sbjct: 179 LVPLGEESVDWLLRYAREGRPQILQQRVSDSLFVTQRGEAMTRQAFWYLIKRYALQAGIH 238 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + H LRH+FATHLL++G DLR +Q +LGH +STTQIYT+V + + +++ Sbjct: 239 KPLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARER----LKQLHAMH 294 Query: 318 HP 319 HP Sbjct: 295 HP 296 >gi|198284552|ref|YP_002220873.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667700|ref|YP_002427220.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC 23270] gi|198249073|gb|ACH84666.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519913|gb|ACK80499.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC 23270] Length = 302 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 96/313 (30%), Positives = 153/313 (48%), Gaps = 19/313 (6%) Query: 11 SFELLKERQ---NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67 S L ERQ +L L +E+ L + TL +Y D Q LA E +T+ T + Sbjct: 3 SAGLSAERQRIDTFLDALWLEKNLGENTLTAYRQDLLQVAAALA---EWDLTLTTADDGA 59 Query: 68 YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127 I + +R RS+ R LS ++ F Y ++ + N+++ + LP Sbjct: 60 LARI---LGQRLQSGAALRSVVRLLSSVRRFYGYAEREGWVSRDPSRNLQSPRIGRVLPH 116 Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 L+E + LL T + R++A+L L+Y CGLR+SE ++L + + Sbjct: 117 VLSETEI-----EALLAAPDCTHPLGLRDAAMLELMYACGLRVSELVNLETRQVDLSADM 171 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 + + GKG K R+VP+ + +Y + P L I LF RG + F + Sbjct: 172 VVVFGKGRKERLVPMGEVAAGRVTQYLQMGRPQILGQRISAALFVTGRGAAMTRQRFWQN 231 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 I + R G+ + + H+LRH+FATHLL++G DLRS+Q +LGH LSTT+IYT+V Sbjct: 232 IERYARSAGITQTVSPHSLRHAFATHLLNHGADLRSVQLMLGHAALSTTEIYTHVAQAR- 290 Query: 307 GDWMMEIYDQTHP 319 + ++ + HP Sbjct: 291 ---LKALHAKHHP 300 >gi|282854671|ref|ZP_06264006.1| phage integrase, N-terminal SAM domain protein [Propionibacterium acnes J139] gi|282582253|gb|EFB87635.1| phage integrase, N-terminal SAM domain protein [Propionibacterium acnes J139] gi|314981983|gb|EFT26076.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL110PA3] gi|315090894|gb|EFT62870.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL110PA4] Length = 300 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 74/255 (29%), Positives = 128/255 (50%), Gaps = 4/255 (1%) Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 ++ +++RA+++ R +++R S + F ++ + + + ++K Sbjct: 48 RIGISQVRAWLADTRVAGASAATMQRRWSAARVFFRWAANEGLVSADPTATLNSVKVPKR 107 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 LP L QA ++D + H+ AR++AIL +LYG GLR+ E L ++ Sbjct: 108 LPATLGVDQARHILDEAVAQARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRS 167 Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 + T+++ GKGDK R VP+ +AI + + + LF G RG+ ++ V + Sbjct: 168 RHTVKVTGKGDKERTVPMGAPALRAIDTWLPRREEWVGPHSGQALFLGERGRRIDQRVVR 227 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 R + R H LRH+ ATHLL G DLR++Q +LGH L+TTQIYT+V+++ Sbjct: 228 RVVHTHLRAEPDSPDLGPHGLRHAMATHLLEGGADLRTVQDMLGHKSLATTQIYTHVSTE 287 Query: 305 NGGDWMMEIYDQTHP 319 + + Q HP Sbjct: 288 R----LRTAFRQAHP 298 >gi|317121809|ref|YP_004101812.1| integrase family protein [Thermaerobacter marianensis DSM 12885] gi|315591789|gb|ADU51085.1| integrase family protein [Thermaerobacter marianensis DSM 12885] Length = 336 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 95/327 (29%), Positives = 151/327 (46%), Gaps = 20/327 (6%) Query: 2 EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61 EG PE + +L +L +ERGL+ TL++Y D +L FL E + Sbjct: 10 EGPGRPEAGGPPAADVVEAYLDHLRLERGLAVRTLEAYAADLAGWLDFLGL--EPPVDAA 67 Query: 62 TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121 T+ +++ ++R ++++ + + ++ R L+ ++ ++ + S + + Sbjct: 68 TLGRVTGRDLRRWLAQLDQRGLQRSTVARKLAAVRGLFRFAVREGWIPASPAARLGTPRV 127 Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 LPR ++A L++ T RN A+L LLYGCGLR+ E L ++ Sbjct: 128 RRRLPRVYTPEEARALLEAAGAGTGPAAL----RNRALLELLYGCGLRVGELSGLDLDDV 183 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIR------ 234 + LR+ GKG K RI+PL V A+ Y D P P G R Sbjct: 184 DWEGGWLRVYGKGGKERILPLAGPVAAALRAYVEDGRPHLAAARGSRPCPPGDRQAVFLN 243 Query: 235 --GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 G L+P Q +R+ + L H LRH+FATHLL G LR++Q +LGH L Sbjct: 244 RWGGRLSPRSIQAIVRKAGAVVAR-LEAHPHLLRHTFATHLLDGGAGLRAVQELLGHASL 302 Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHP 319 + TQIYT+V+ + +Y Q HP Sbjct: 303 AATQIYTHVSRAR----LWAVYRQAHP 325 >gi|317124968|ref|YP_004099080.1| tyrosine recombinase XerD subunit [Intrasporangium calvum DSM 43043] gi|315589056|gb|ADU48353.1| tyrosine recombinase XerD subunit [Intrasporangium calvum DSM 43043] Length = 311 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 96/319 (30%), Positives = 154/319 (48%), Gaps = 19/319 (5%) Query: 7 PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66 P+ + +L +E + WL ++ IE+G S TL+SYE D R++ L E+ + Sbjct: 3 PKPRTTQLDREVRGWLDHVRIEKGASDNTLKSYERDLRKYREHLHHRGIERAA-----AV 57 Query: 67 SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126 S ++ F++ R + + S R+L ++ F ++L N+ + LP Sbjct: 58 SERDVTDFLASLRERGLAASSAARTLVAVRGFHRFLALEGEVAGDPAGNVAPPTPPSRLP 117 Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN----IM 182 +A+ + V+ +L +S R+ A+L +LYG G RISEA+ L + + Sbjct: 118 KAIP----IEAVERLLAASSVGDTPESLRDRALLEVLYGVGARISEAIDLDVDDLDTGVA 173 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNP 240 + +R+ GKG K RIVP+ +A+ Y L Q LF RG+ L+ Sbjct: 174 GEVGLVRLLGKGSKERIVPVGRFAVEAVDAYLVRGRPALAQRGQGGPALFLNQRGRRLSR 233 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 +++ GL + HTLRHSFATHLL G D+R +Q +LGH ++TTQIYT Sbjct: 234 QSAWSVVQRAAERAGLTEHVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTL 293 Query: 301 VNSKNGGDWMMEIYDQTHP 319 V+ + E+Y HP Sbjct: 294 VSPHR----LREVYAGAHP 308 >gi|152971840|ref|YP_001336949.1| site-specific tyrosine recombinase XerD [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238896434|ref|YP_002921172.1| site-specific tyrosine recombinase XerD [Klebsiella pneumoniae NTUH-K2044] gi|262042535|ref|ZP_06015692.1| tyrosine recombinase XerD [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330010972|ref|ZP_08306937.1| tyrosine recombinase XerD [Klebsiella sp. MS 92-3] gi|150956689|gb|ABR78719.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238548754|dbj|BAH65105.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259040095|gb|EEW41209.1| tyrosine recombinase XerD [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328534349|gb|EGF60959.1| tyrosine recombinase XerD [Klebsiella sp. MS 92-3] Length = 298 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 91/303 (30%), Positives = 156/303 (51%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ER L++ TL +Y R + + + +++ ++ +++A +++R Sbjct: 9 EQFLDALWLERNLAENTLSAYR---RDLTMLVEWLHHRGLSLASV---GSDDLQALLAER 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 ++ S R LS ++ F ++L + KI + + + K LP+ L+E Q L+ Sbjct: 63 QSGGYKATSTARLLSAVRRFFQHLYREKIRPDDPSALLASPKLPQRLPKDLSEAQVERLL 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L+ ++ R+ A+L +LY GLR+SE + LT +I Q LR+ GKG+K R Sbjct: 123 QAPLVEQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVLRVVGKGNKER 177 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL + Y + P+ LN LF R + + F I+ G+ Sbjct: 178 LVPLGEEAVLWVENYLEYGRPWLLNGVASDVLFPSQRAQQMTRQTFWHRIKHYAVLAGID 237 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Q Sbjct: 238 SEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQ 293 Query: 317 THP 319 HP Sbjct: 294 HHP 296 >gi|300705544|ref|YP_003747147.1| site-specific tyrosine recombinase [Ralstonia solanacearum CFBP2957] gi|299073208|emb|CBJ44566.1| site-specific tyrosine recombinase [Ralstonia solanacearum CFBP2957] Length = 329 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 100/326 (30%), Positives = 163/326 (50%), Gaps = 41/326 (12%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L+ ER LS TL++Y TR+ + + R L + IR+ I+ Sbjct: 23 YLDVLKFERQLSPHTLENY---TRELAVLQRLGARFAAGVDLTRLLPH-HIRSMIAHLHG 78 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVD 139 + RS+ R+LS + + K+L R+ +N ++ +R K LP+AL+ +QA+ L++ Sbjct: 79 NGLSGRSIARALSVWRGWYKWLALREAAVTANPVDGVRAPKSPKRLPKALSVEQAVALME 138 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----------MD-DQSTL 188 L ET R+ A+ L Y CGLR+SE + L +++ +D + + Sbjct: 139 Q-LPGDDPET----VRDRAVNELFYSCGLRLSELVGLDLRHVKAGDYASAGWLDLEAREV 193 Query: 189 RIQGKGDKIRIVPL----------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238 + GKG+K R VP+ +VR L D P D + LF RGK L Sbjct: 194 MVLGKGNKYRTVPVGSKAAEALAAWLAVRPQ-LARPDAAPEDAHA-----LFLSARGKRL 247 Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 Q +++ G+P H LRHSFATH+L + GDLR++Q +LGH +++TQ+Y Sbjct: 248 TQRQIQIRMKRNAIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVY 307 Query: 299 TNVNSKNGGDWMMEIYDQTHPSITQK 324 T+++ ++ + +IYDQ HP +K Sbjct: 308 TSLDFQH----LAKIYDQAHPRAKKK 329 >gi|254000090|ref|YP_003052153.1| tyrosine recombinase XerD [Methylovorus sp. SIP3-4] gi|253986769|gb|ACT51626.1| tyrosine recombinase XerD [Methylovorus sp. SIP3-4] Length = 298 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 93/302 (30%), Positives = 157/302 (51%), Gaps = 18/302 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +++ +L +E GL++ TL+SY D F +L ++E + Q + AF R Sbjct: 11 SFVDHLWLEDGLARNTLESYRRDLALFADWL--WSEHAKLLNQADQGDLQQYLAF----R 64 Query: 80 TQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 RS+ R ++ ++ F +Y L++ +++ + +L + K SLP++LNE + + L Sbjct: 65 FPTSKPRSVSRLIASLRRFYRYGLREGQVSVDPTLL-IDTPKLPRSLPKSLNEDEVVAL- 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L+ + I R+ A+L LY CGLR+SE + L + ++ +R+ GKG K R Sbjct: 123 ----LNAPDIAQAIGLRDRAMLETLYACGLRVSELVGLRYTEVSLNEGVVRVTGKGSKTR 178 Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL +L Y + P L + LF RG+ + F I++ G+ Sbjct: 179 LVPLGEESVDWLLRYVREGRPQILQQRVSDSLFVTQRGEAMTRQAFWYLIKRYALQAGIH 238 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + H LRH+FATHLL++G DLR +Q +LGH +STTQIYT+V + + +++ Sbjct: 239 KPLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARER----LKQLHAMH 294 Query: 318 HP 319 HP Sbjct: 295 HP 296 >gi|308188856|ref|YP_003932987.1| Tyrosine recombinase xerC [Pantoea vagans C9-1] gi|308059366|gb|ADO11538.1| Tyrosine recombinase xerC [Pantoea vagans C9-1] Length = 301 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 91/301 (30%), Positives = 152/301 (50%), Gaps = 19/301 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +L+ L++ER LS LT SY RQ +A E K+ + QL ++R+ ++ R Sbjct: 11 GFLRYLKVERQLSPLTQSSY---ARQLAALVAIADEMKLG--SWAQLEPAQVRSMAARSR 65 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + SL LS ++SFL + + + + + + +K+ LP+ ++ + L++ Sbjct: 66 RAGLSASSLALRLSALRSFLDWQVSQGLLSANPAKGVMTPRKARHLPKNIDVDEVNQLLE 125 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 L + R+ A+L ++YG GLR+SE +++ +++ D + + GKG K R Sbjct: 126 IDL------NDPLAVRDRAMLEVMYGGGLRLSELVNMDCRHVDLDSGEVWVVGKGSKERR 179 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VP+ R A+ P Q LF RG ++P Q+ + G+ Sbjct: 180 VPI---GRTAVTWIQHWLPLRETFGGQDDALFLSTRGNRISPRNVQKRFAEWGVRQGVAS 236 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 H LRHSFATHLL + GDLR++Q +LGH LSTTQIYT+++ ++ + +YD H Sbjct: 237 HIHPHKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LASVYDAAH 292 Query: 319 P 319 P Sbjct: 293 P 293 >gi|90408775|ref|ZP_01216920.1| integrase/recombinase (XerC/CodV family) [Psychromonas sp. CNPT3] gi|90310119|gb|EAS38259.1| integrase/recombinase (XerC/CodV family) [Psychromonas sp. CNPT3] Length = 298 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 84/311 (27%), Positives = 168/311 (54%), Gaps = 16/311 (5%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 L K+ +L ++ +RGLS +T+++Y + +F+ L E I++ + L+ +R Sbjct: 3 LQKQIDRYLNHIASQRGLSPITIKNYSRNLAEFISLL-----EPQNIKSWQDLNSDHVRL 57 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 I + + I RS+ +S ++SFL++L + ++ T + + K + LP+ ++ + Sbjct: 58 IIKELHQKGIKSRSIATKISALRSFLEFLVQDEVLTFNPAKGVVTPKLNKPLPKNISVDE 117 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L++ HE + R+ ++ L+Y GLR+SE + + +++ ++ + + GK Sbjct: 118 VFQLLN------IHEDDPLSLRDQCMMELMYSSGLRLSELVGIDLKDLKLREAEVMVLGK 171 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 G K R++P+ +++ + + P +L + + LF + K ++ Q + + Sbjct: 172 GSKQRLLPITKKAVESLRAWLKVRP-ELCESGEQALFVSKQKKRISARNVQMRMEKWGLQ 230 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 LP H LRHSFATH+L + G+LR++QS+LGH LSTTQ+YT+++ ++ + E+ Sbjct: 231 QQLPSHLNPHKLRHSFATHMLESSGNLRAVQSLLGHANLSTTQVYTHLDFQH----LAEV 286 Query: 314 YDQTHPSITQK 324 YD+ HP +K Sbjct: 287 YDKAHPRAKRK 297 >gi|296121441|ref|YP_003629219.1| tyrosine recombinase XerD [Planctomyces limnophilus DSM 3776] gi|296013781|gb|ADG67020.1| tyrosine recombinase XerD [Planctomyces limnophilus DSM 3776] Length = 315 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 92/302 (30%), Positives = 149/302 (49%), Gaps = 15/302 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + ++ L+ E GL++ T+ SYE D ++F + ++T T++ LS ++ Sbjct: 26 EGFVAYLQGECGLARNTVISYERDIKRFSDWFHESGVVRVTDITLQDLS-----GYLRYL 80 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 K+ ++ R L +K F +YL I ES + + K LP+ L+E Sbjct: 81 HELKLATSTIARHLVSLKMFFRYLMLEGILKESVADLLNSPKLWEHLPKVLSEDAV---- 136 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 N LL R+ A+L +LY G R SE SL +++ D+ R GKG+K R Sbjct: 137 -NRLLDAPMHQDLNPYRDRALLAVLYATGCRASEVCSLKMRDLQLDEGFCRCVGKGNKER 195 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +V L P A+ Y P N+ P+F G+ ++ + +++ +GL Sbjct: 196 LVSLNPVAVSALKTYLARERPARAGTNLDSPVFTSRSGRSIDRIQVWKLVKRYASRIGLS 255 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + T HTLRHSFATH+L+NG ++R++Q +LGH + TTQIYT+V + I+ Q Sbjct: 256 DAVTPHTLRHSFATHMLANGAEIRALQELLGHASIRTTQIYTHVEHSR----LKAIHKQC 311 Query: 318 HP 319 HP Sbjct: 312 HP 313 >gi|314923769|gb|EFS87600.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL001PA1] gi|314966217|gb|EFT10316.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL082PA2] gi|315095107|gb|EFT67083.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL060PA1] gi|315104336|gb|EFT76312.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL050PA2] gi|327328115|gb|EGE69884.1| putative tyrosine recombinase XerC [Propionibacterium acnes HL103PA1] Length = 300 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 74/255 (29%), Positives = 128/255 (50%), Gaps = 4/255 (1%) Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 ++ +++RA+++ R +++R S + F ++ + + + ++K Sbjct: 48 RIGISQVRAWLADTRVAGASAATMQRRWSAARVFFRWAANEGLVSADPTATLNSVKVPKR 107 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 LP L QA ++D + H+ AR++AIL +LYG GLR+ E L ++ Sbjct: 108 LPATLGVDQARHILDEAVAQARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRS 167 Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 + T+++ GKGDK R VP+ +AI + + + LF G RG+ ++ V + Sbjct: 168 RHTVKVTGKGDKERTVPMGAPALRAIDTWLPRREEWVGPHSGQALFLGERGRRIDQRVVR 227 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 R + R H LRH+ ATHLL G DLR++Q +LGH L+TTQIYT+V+++ Sbjct: 228 RVVHTHLRAEPDSPDLGPHGLRHAMATHLLEGGADLRTVQDMLGHKSLATTQIYTHVSTE 287 Query: 305 NGGDWMMEIYDQTHP 319 + + Q HP Sbjct: 288 R----LRTAFRQAHP 298 >gi|253681771|ref|ZP_04862568.1| tyrosine recombinase XerD [Clostridium botulinum D str. 1873] gi|253561483|gb|EES90935.1| tyrosine recombinase XerD [Clostridium botulinum D str. 1873] Length = 292 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 85/295 (28%), Positives = 154/295 (52%), Gaps = 19/295 (6%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 +++ LSK T+++Y+ D +F FL E I + I A++ + ++ D Sbjct: 13 LKKELSKNTIEAYKRDLLKFAKFLNKRHE------NILESDMVSIMAYVQILKKERKADS 66 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--LLH 144 S+ RSL I++F K+L K ++ ++N K +LP L VD V L Sbjct: 67 SIIRSLVAIRNFYKFLIKTGENVDNPLINYEVPKNKRTLPEILT-------VDEVDKFLS 119 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 +++ R+ A+L L+Y G+++SE L +T ++ S ++ +G DK RI+P+ Sbjct: 120 APDCSEYKGIRDKAMLELMYATGMKVSELLKITIFDVNLKLSYIKCKGAKDKERIIPIGS 179 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 + EY + +N + LF +RG + F + +++ + + ++T Sbjct: 180 YAVNCLNEYLKVRD-KMNADNSELLFCNLRGGKMTRQGFWKIVKKYAKDANINKKIDSYT 238 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LRHSFA HLL NG D++S+Q +LGH ++TTQIY++++ KN ++++Y + HP Sbjct: 239 LRHSFAVHLLQNGADMKSVQELLGHNTIATTQIYSSISKKNK---IVDVYKKAHP 290 >gi|114776721|ref|ZP_01451764.1| tyrosine recombinase [Mariprofundus ferrooxydans PV-1] gi|114552807|gb|EAU55238.1| tyrosine recombinase [Mariprofundus ferrooxydans PV-1] Length = 298 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 95/305 (31%), Positives = 152/305 (49%), Gaps = 20/305 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +LQ L R S T+ +Y D L + E I ++Q++ +++ ++ Sbjct: 13 YLQELAEVRLASPHTIAAYRRD-------LGAFGEHCGNI-GLQQITRLQVQDWLVVGHA 64 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + +L R LS + L + I + +R KKS LPR L +Q Sbjct: 65 KGLAAATLARRLSALTGLLDSAVQAGICPANVAAGVRPPKKSARLPRTLPPEQT-----A 119 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 L+ +H + D R+ A+L ++YG GLR+SEA+ L +I LR+ GKG K RIV Sbjct: 120 ALMQPTHASA--DRRDLALLAVMYGAGLRVSEAVGLDLHDIDLHSCELRVLGKGSKQRIV 177 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 PL + + ++ D L + + +F G+ L QR ++ G +S Sbjct: 178 PLPTTAADLLGQWLDERLLGL-VRDERAVFLNRFGQRLTARSVQRMLKTRALESGADISV 236 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 T H LRHSFATHLL+ G DLR+IQ +LGH L+TT+ YT+++ + E+YD++HP Sbjct: 237 TPHRLRHSFATHLLAGGVDLRAIQELLGHASLATTERYTHLDIAK----LTEVYDRSHPR 292 Query: 321 ITQKD 325 ++D Sbjct: 293 AGRRD 297 >gi|281421506|ref|ZP_06252505.1| integrase/recombinase XerD [Prevotella copri DSM 18205] gi|281404578|gb|EFB35258.1| integrase/recombinase XerD [Prevotella copri DSM 18205] Length = 318 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 92/292 (31%), Positives = 149/292 (51%), Gaps = 20/292 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +N+++ L++ R SK TL +Y D L FL Y ++ + T ++ ++ F + Sbjct: 7 KNYMRYLKLGRNFSKNTLDAYYHD----LNFLLEYADKNNLVLT--EMKLEDLENFSASL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + RS R LSGI+SF +YL + + + + LP L+ ++ L Sbjct: 61 HDRGVSARSQARILSGIRSFYRYLVLDDYIKDDPTELLVSPQIGKHLPEYLSVEEVDMLE 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + L KW RN AI+ +L+ CGLR+SE ++L ++ +++ +R+ GKG+K R Sbjct: 121 AAIDLE-----KWEGQRNKAIIEILFSCGLRVSELVNLKKSDVFEEEKFIRVIGKGNKER 175 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRY 253 IVP+ K I +Y D NL P +F RG L + I+ Sbjct: 176 IVPISGKALKEINLWY----IDRNLMTIKPGEEDYVFLNRRGAHLTRNMILIMIKNAAYD 231 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 G+ + + HTLRHSFAT LL G DLR IQ++LGH + TT+IYT++ + + Sbjct: 232 AGIKKTISPHTLRHSFATALLKGGADLRVIQALLGHEDIGTTEIYTHLETSD 283 >gi|255524155|ref|ZP_05391115.1| integrase family protein [Clostridium carboxidivorans P7] gi|296186613|ref|ZP_06855015.1| putative tyrosine recombinase XerD [Clostridium carboxidivorans P7] gi|255512140|gb|EET88420.1| integrase family protein [Clostridium carboxidivorans P7] gi|296048650|gb|EFG88082.1| putative tyrosine recombinase XerD [Clostridium carboxidivorans P7] Length = 292 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 84/303 (27%), Positives = 163/303 (53%), Gaps = 24/303 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +++NLE ++ +SK T+ +Y D +F F+ E + I+ + I A++ + + Sbjct: 8 YIENLE-KKNVSKNTMDAYVRDISKFYNFIKERNENVVEIEVV------SIMAYVQQLQK 60 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + S+ R++ +++F KYL + E+ ++N K +++P+ L ++ TL+ Sbjct: 61 EGRATSSIIRNIVSLRNFYKYLTIKGFINENPMINYEIPKVKHNIPKILTVEEVDTLLST 120 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 L T+ R+ A+L +LY G++++E L++T +I + ++ +G ++ RI+ Sbjct: 121 PDLGTNK-----GIRDKAMLEVLYATGMKVTEILNITIYDINLKLAYIKCKGSKNQERII 175 Query: 201 PLLPSVRKAILEYYDLCP----FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 P+ + + EY + ++L+L LF +RG + F + ++ + G+ Sbjct: 176 PIGSIAIQCLQEYLKIRSQINIYNLDL-----LFINLRGIQMTRQGFWKIVKYYAKAAGV 230 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 A TLRHSFA HLL NG D++S+Q +LGH LS TQIY++++ KN + E+Y + Sbjct: 231 DKHINAFTLRHSFAVHLLQNGADIKSVQELLGHKDLSATQIYSSISRKNK---IAEVYKK 287 Query: 317 THP 319 +HP Sbjct: 288 SHP 290 >gi|227431599|ref|ZP_03913636.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352657|gb|EEJ42846.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 300 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 86/287 (29%), Positives = 139/287 (48%), Gaps = 9/287 (3%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 +E Q + LE ER S TL++Y D +F +L E ++ ++R ++ Sbjct: 4 REEQLYHDYLESERQYSPQTLKAYLTDIAEFKNYL----HESGGFTKFGEVQTLDVRVYL 59 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 + +K+ ++ R +S ++ F ++L + ++ ++ K N LP E + Sbjct: 60 NDLYEKKLARTTISRKISSLRMFYQFLIINQFAIDNPFDSISLKKHQNQLPDFFYEDELH 119 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L D H H W RN+A+L LY G+R++E LT + Q + I GKG+ Sbjct: 120 ELFDVTYNHEDH--LW--ERNAALLEFLYATGIRVAEIAGLTLSQLDFSQRLVLIHGKGN 175 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYL 254 K R VP + EY L +N + +F RG+P+ P + QL + Sbjct: 176 KDRYVPFGHFAENIMKEYITDLRASLTVNQEHEYVFVNHRGEPITPAGITYILNQLMQRS 235 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 L H LRH+FATHL++ G D+R++Q +LGH LSTTQ+YT+V Sbjct: 236 ALTGKIHPHMLRHTFATHLINRGADMRTVQELLGHVNLSTTQMYTHV 282 >gi|311113476|ref|YP_003984698.1| tyrosine recombinase XerC [Rothia dentocariosa ATCC 17931] gi|310944970|gb|ADP41264.1| tyrosine recombinase XerC [Rothia dentocariosa ATCC 17931] Length = 356 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 91/299 (30%), Positives = 152/299 (50%), Gaps = 13/299 (4%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L E+ S+ T++SY D F F+ + I + ++ IR ++ ++ Sbjct: 65 LRYEKYRSEETIRSYISDLCGFFGFIG-----RRGISRVEDVNLQLIREWLGSMHLKQNA 119 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 ++ R S +++F + + ++ TE+ M K+ LP L+++Q +++D V L Sbjct: 120 KTTVARRGSTLRTFFSWAHEEELITENPTRGMSTPKRDRHLPAVLSQEQMSSVLDTVALR 179 Query: 145 TSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 + I R A+L +LY G+RISE L ++ T+R+ GKG+K R+VPL Sbjct: 180 CRENPQDIRMLRLWAVLEVLYSSGMRISELTGLNLSSVDRANKTVRVIGKGNKERVVPLG 239 Query: 204 PSVRKAILEYYDLC-PFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 K + ++ + P+ + + LF G RGK NP + I ++ R L + Sbjct: 240 TPAMKVLSQWVKIGRPYWIAKGSRDVTALFIGPRGKRANPRQIREDISRILRTLENTEVS 299 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 AH LRHS ATHL+ G D+R++Q +LGH LSTTQIYT+V+ K + + Y + HP Sbjct: 300 GAHVLRHSAATHLVDGGADIRTVQELLGHASLSTTQIYTHVSMKR----LADTYIRAHP 354 >gi|237785449|ref|YP_002906154.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385] gi|237758361|gb|ACR17611.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385] Length = 326 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 89/306 (29%), Positives = 150/306 (49%), Gaps = 19/306 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 ++ +L +E+ S TL +Y+ D +++ +L + + I ++ + +I FI+ R Sbjct: 31 YIDHLAVEKNASPNTLSNYQRDLNKYVAWL---DQHDLNIDSVDE---PDIEQFIADLRR 84 Query: 81 -------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 + S R+ ++S ++ + + L+ SLP AL +Q Sbjct: 85 GDSTLGWSPLAASSAARATVAVRSLHRFSHEEGQLARDVAAGVTVLRSGQSLPHALTVEQ 144 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L++ ++ S + I R+ A++ LLYG G+RISEAL+L +I + + +R+ GK Sbjct: 145 VNRLIEACPVNES--SNPIALRDRAVIELLYGTGMRISEALNLDIDSIDRNHAYVRVVGK 202 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 G K R+VP+ AI + + LF RG L +++ Sbjct: 203 GRKERLVPIGAPALHAIDAWLVRGRPSMVKRSDKALFLNARGNRLGRQSVWKFLHAAAER 262 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 GL S HTLRHS+ATHLL G D+R++Q +LGH ++TTQIYT V+ N + E+ Sbjct: 263 CGLGDSVGPHTLRHSYATHLLQGGADIRAVQELLGHASVTTTQIYTAVSIDN----LREV 318 Query: 314 YDQTHP 319 Y +HP Sbjct: 319 YATSHP 324 >gi|313897322|ref|ZP_07830865.1| phage integrase, N-terminal SAM domain protein [Clostridium sp. HGF2] gi|312957692|gb|EFR39317.1| phage integrase, N-terminal SAM domain protein [Clostridium sp. HGF2] Length = 307 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 100/318 (31%), Positives = 150/318 (47%), Gaps = 28/318 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q++L ++ S T+ SY D +++L +L + ++ R +I++F+S Sbjct: 8 QDYLHYIQAVDQKSLATIHSYTQDLQEYLSWLQMQGKTEMEDILPR-----DIQSFLSDM 62 Query: 79 RTQKIGDRSL--KRS-----LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131 I + L KRS LS I F +++ + +++R KK LP N Sbjct: 63 EQGDIQEDGLCYKRSSVNHMLSSIHMFHRFISMNHPSILDPSIHLRGGKKEQKLPLYFNP 122 Query: 132 KQALTLVDNVLLHTSHETKWIDARN---SAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 L+D+ DA+ AIL LLYGCGLR+SE L + +Q L Sbjct: 123 HDIELLLDSF---------GQDAQGLYQKAILELLYGCGLRVSEVCELRINQVHLEQGYL 173 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 R+ GKGDK R+VP+ + + Y +F RG L I+ Sbjct: 174 RVIGKGDKERMVPMHERCMRVLRTYLTQIRPTWEKRKSTRVFLNSRGNVLTRQYVHTLIK 233 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 Q + LGL +AH+ RHSFATHLL G DLR +Q +LGH ++TTQIYT+V ++ Sbjct: 234 QRLQALGLDERLSAHSFRHSFATHLLDGGADLRVVQELLGHSDIATTQIYTHVQNRR--- 290 Query: 309 WMMEIYDQTHPSITQKDK 326 + E DQ HP +K+K Sbjct: 291 -LKEAIDQYHPRSVKKEK 307 >gi|94986683|ref|YP_594616.1| site-specific recombinase [Lawsonia intracellularis PHE/MN1-00] gi|94730932|emb|CAJ54295.1| site-specific recombinase [Lawsonia intracellularis PHE/MN1-00] Length = 306 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 96/300 (32%), Positives = 146/300 (48%), Gaps = 18/300 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL L ERGLS T+Q+Y+ D +F F+ + +I I FI R Sbjct: 13 WLDKLISERGLSHNTIQAYKQDID---VFYLFFQDAGCNFNSIDD---EYIMLFIIWLRK 66 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + R+L R LS I++F + + I + L + K + LP L++ + L L Sbjct: 67 RGDSSRTLARRLSSIRNFFHWCVEEDILLSNPALLIDGPKLPSLLPNILSQDEMLRL--- 123 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 L T T + R+ IL LLY G+R+SE + + + D+ +++ GKG K R + Sbjct: 124 --LTTPDITNKLGFRDKVILELLYASGIRVSELIGVHVLDFDQDKGIIKVFGKGGKERYI 181 Query: 201 PLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 PL S K ++ Y + P + I+ LF GK L + I++ + S Sbjct: 182 PLHSSAMKLLIHYVQKIRP--MFTPIEKFLFLNRSGKGLTRQAIWKIIKRYALLASINKS 239 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HT RH+FATHLL G DLRS+Q +LGH +S T++YT+V S D + I+ HP Sbjct: 240 ISPHTFRHTFATHLLEGGADLRSVQLLLGHVDMSATELYTHVQS----DRLKYIHSMFHP 295 >gi|46446417|ref|YP_007782.1| XerD protein [Candidatus Protochlamydia amoebophila UWE25] gi|46400058|emb|CAF23507.1| probable XerD protein [Candidatus Protochlamydia amoebophila UWE25] Length = 291 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 90/289 (31%), Positives = 150/289 (51%), Gaps = 13/289 (4%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 ++++ +++ L E+GL++ TL++Y D F FL ++ ++ Q+ I Sbjct: 1 MIRDLEDFFIYLASEKGLAQNTLEAYRRDLFSFATFL-----KQRSVNNWSQIHLQAIID 55 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 +++ ++ Q S+ R+L IK ++LK+ + T + +L M K +P L+ Sbjct: 56 YLALKQQQHYASASICRALIAIKVLFRFLKREGMITTNILLLMETPKLWQLIPDVLS--- 112 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L +D +L + +T W AR+ AIL LY CGLR+SE L ++ D + +R+ GK Sbjct: 113 -LEEIDRILAIPNIQT-WRGARDKAILETLYACGLRVSELCQLKIYDV--DDTFVRVLGK 168 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 G K RIVP+ AI Y N + LF + KPL + + ++ R Sbjct: 169 GGKERIVPIGQQAIAAIDGYLSFREGGENSRNEF-LFITKKSKPLTRALVWKLVKFYARQ 227 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + S + HT RH+FATHLL +G DLR IQ +LGH +++T YT+V+ Sbjct: 228 ASIFKSISPHTFRHTFATHLLDHGADLRVIQDMLGHASINSTDRYTHVS 276 >gi|294634844|ref|ZP_06713366.1| tyrosine recombinase XerD [Edwardsiella tarda ATCC 23685] gi|291091717|gb|EFE24278.1| tyrosine recombinase XerD [Edwardsiella tarda ATCC 23685] Length = 299 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 93/303 (30%), Positives = 151/303 (49%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +E+ L++ TL SY D R +LA++ +T S +++ F ++R Sbjct: 10 EQFLDALWLEKNLAENTLASYRQDLRTLAEWLAYHDLSLLTA------SPGDLQNFFAQR 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + + T+ + K LP+ L+E Q Sbjct: 64 VDGGYKASSSARLLSALRRCYQYLYRETLRTDDPSAQLAAPKLPQRLPKDLSEAQV---- 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + LL ++ R+ A+L LLY GLR+SE + L +++ Q +R+ GKG+K R Sbjct: 120 -DALLQAPAIDNPLELRDKAMLELLYATGLRVSELVGLGQEDVSLRQGVVRVIGKGNKER 178 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL I Y + P+ +N LF R + + F I+ G+ Sbjct: 179 LVPLGEEAIYWIEYYLEYGRPWLVNGQTVAALFPSNRARQMTRQTFWHRIKHYAVLAGID 238 Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Q Sbjct: 239 TQRLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQ 294 Query: 317 THP 319 HP Sbjct: 295 HHP 297 >gi|229817402|ref|ZP_04447684.1| hypothetical protein BIFANG_02664 [Bifidobacterium angulatum DSM 20098] gi|229785191|gb|EEP21305.1| hypothetical protein BIFANG_02664 [Bifidobacterium angulatum DSM 20098] Length = 316 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 90/294 (30%), Positives = 151/294 (51%), Gaps = 25/294 (8%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L RGLS TL+SY D L +L E I+ + +++ ++R ++ +R + Sbjct: 17 LGANRGLSGNTLKSYRTDVLDCLTYL-----ESQGIEALDEITIDDLRGWMGQR-SPSHA 70 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD---NV 141 S+ R + ++ F + + I + ++ K +++LP L+E QA L+D Sbjct: 71 RSSMARGVVAVRCFFSWGYEHGIIRTNPASALKTPKIADTLPTVLSEDQAERLMDREDET 130 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 + + K + R++AIL LLY G+R++E + L ++ T+++ GKG+K R+VP Sbjct: 131 AAQSPDDPKAL--RDAAILELLYATGIRVAELVGLDIADVDFSNRTVKVTGKGNKQRVVP 188 Query: 202 L-LPSV----------RKAILEYYD-LCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIR 248 LP+ R ++LE + D + + + LF G+RG+ L+ + +R + Sbjct: 189 FGLPAAHAVEAWLKHGRPSVLESCSGMQRTDGDADDAMRALFLGMRGRRLDQRMARRVVH 248 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 R G+P H LRHS ATHLL G DLR +Q +LGH L TTQ YT+V+ Sbjct: 249 DAARRAGVP-DVGPHALRHSAATHLLDGGADLREVQEMLGHSSLKTTQRYTHVS 301 >gi|282859943|ref|ZP_06269031.1| tyrosine recombinase XerD [Prevotella bivia JCVIHMP010] gi|282587346|gb|EFB92563.1| tyrosine recombinase XerD [Prevotella bivia JCVIHMP010] Length = 310 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 87/280 (31%), Positives = 146/280 (52%), Gaps = 12/280 (4%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L++E+G S+ T+ +Y D + +L EK+ + ++ A IS+ IG Sbjct: 19 LKLEKGHSENTVDAYMHDIEKLSSYLK---AEKVDVLDVKLDDLEHFAASISE---IGIG 72 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 RSL R LSG++ F ++L + + K+ LP L+ + +++L Sbjct: 73 ARSLARILSGVRHFYRFLVLDGYLEADPTELLESPKQPQHLPEVLSTAEV-----DIILQ 127 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + +KW RN AI+ +L+ CGLR+SE +L N+ D +R+ GKG K R+VP+ P Sbjct: 128 SIDLSKWEGQRNKAIIEMLFSCGLRVSELTNLKLSNLYLDDLYIRVMGKGSKERLVPISP 187 Query: 205 -SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 +V + + D + + +F RG L + +++ + G+ + + H Sbjct: 188 RAVEELNYWFLDRNQMVIKEGEEDYVFLNRRGAHLTRTMILIMLKRYAKGAGIKKTISPH 247 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 TLRHSFAT LL G DLRSIQ++LGH + TT+IYT++++ Sbjct: 248 TLRHSFATALLEGGADLRSIQAMLGHESVVTTEIYTHIDT 287 >gi|94969888|ref|YP_591936.1| tyrosine recombinase XerD subunit [Candidatus Koribacter versatilis Ellin345] gi|94551938|gb|ABF41862.1| tyrosine recombinase XerD subunit [Candidatus Koribacter versatilis Ellin345] Length = 313 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 92/303 (30%), Positives = 160/303 (52%), Gaps = 14/303 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L L +E+GLS+L++ +Y D +QF FLA + K ++ ++ ++R F+ Sbjct: 12 RDFLDYLRVEKGLSRLSVSAYSKDMQQFAEFLA---KRKRSLDAAKR---QDVRDFLDSL 65 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL-TL 137 + ++ R++ R LS + F KYL + LN+ + ++ LP++L+ + L TL Sbjct: 66 FSNQLDGRTVARKLSSSRQFYKYLLLDRRIEHDPTLNIESPRQWKVLPKSLSADEVLQTL 125 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 + + E++ + R+ A+L + Y LR+SE + + ++ D + ++GKGDK Sbjct: 126 QGPPRVLDTKESQALALRDRAMLEVFYAGALRVSEMIGVRMEDAKLDLGYMMVRGKGDKE 185 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 RIVPL S A+ Y + L P LF G + L+ + + + G Sbjct: 186 RIVPLGQSALVAVKSYLESGREVLCAGKTSPILFVGKGCRKLSRQRVWQMVSAASQASGR 245 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 S H LRHS ATH++ NG DLR++Q+ILGH +STTQIYT++ D + +++ Sbjct: 246 HASP--HMLRHSCATHMVENGADLRTVQTILGHADISTTQIYTHL----ALDRLKQVHRT 299 Query: 317 THP 319 HP Sbjct: 300 FHP 302 >gi|291615189|ref|YP_003525346.1| tyrosine recombinase XerD [Sideroxydans lithotrophicus ES-1] gi|291585301|gb|ADE12959.1| tyrosine recombinase XerD [Sideroxydans lithotrophicus ES-1] Length = 303 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 90/279 (32%), Positives = 145/279 (51%), Gaps = 12/279 (4%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKI 83 L +E GLS+ TL+SY D +F +L +K ++ ++ +I+ F++ + +K Sbjct: 19 LWLEDGLSRNTLESYRRDLNKFTEWL-----QKQRGCGLQAATHADIQGFLAHLVSGEKA 73 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 S R++S +K +YL ++ T L + K SLP++L E+ +LL Sbjct: 74 KATSTSRAISSLKRLFRYLLRQNKITADPTLQIATPKLPRSLPKSLTEEDV-----ELLL 128 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 + + R+ +L +LY GLR+SE + L+ + D R+ GKG K R+VPL Sbjct: 129 NAPDVDTPLGMRDRTMLEVLYASGLRVSELVGLSVAQVSLDMGVTRVMGKGSKERLVPLG 188 Query: 204 PSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 + Y + P L + LF RG+ + +F I++ + GL + Sbjct: 189 EEALDWVKRYLAEARPALLAGQVADALFVTQRGEGMTRQMFWYLIKKHAKEGGLHKPLSP 248 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V Sbjct: 249 HTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHV 287 >gi|259046879|ref|ZP_05737280.1| integrase/recombinase XerD [Granulicatella adiacens ATCC 49175] gi|259036502|gb|EEW37757.1| integrase/recombinase XerD [Granulicatella adiacens ATCC 49175] Length = 294 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 97/307 (31%), Positives = 158/307 (51%), Gaps = 17/307 (5%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 +KE +L ++ ++ GLS T+ SY D +F FL EE+ I+ ++ + +T + F Sbjct: 1 MKEIHYFLDSIAVQ-GLSDNTVSSYRRDLEKFSQFL----EEQKVIR-LQNVDHTTMVLF 54 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 + K + + S R +S +K F ++L + +I + + K LP+AL+ + Sbjct: 55 LQKLKKDEYAVSSTSRMISCLKKFFQFLIQERIIDKDPTQQIHPPKPKKQLPKALSIDEV 114 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 N LL T + R+ A+L LLY G+R+SE +S+ ++ + L+ GKG Sbjct: 115 -----NRLLEVPDTTTVLGLRDKAMLELLYATGMRVSELISIELGDLHLELGFLQTIGKG 169 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRR 252 +K RI+P+ I Y + L +L LF RG P F + ++++ + Sbjct: 170 NKQRIIPIGQEATNWIQNYLEYARPALEDEKKLSNVLFLNHRGGPFTRQGFWKNLKKIVQ 229 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 + + HTLRHSFATH+L G DLR +Q +LGH +STTQIYT++ ++ M E Sbjct: 230 TAMITKEVSPHTLRHSFATHILEAGADLRIVQELLGHSDISTTQIYTHITNER----MKE 285 Query: 313 IYDQTHP 319 IY Q HP Sbjct: 286 IYKQAHP 292 >gi|304396715|ref|ZP_07378595.1| tyrosine recombinase XerD [Pantoea sp. aB] gi|304355511|gb|EFM19878.1| tyrosine recombinase XerD [Pantoea sp. aB] Length = 297 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 95/303 (31%), Positives = 156/303 (51%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L IER L++ TL SY D + +LA + ++T+ ++ L +++ F+++R Sbjct: 8 EQFLDALWIERNLAQNTLSSYRQDLQTLTGWLAHH---QLTLLSVTPL---DLQQFLAER 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K+ + + K LP+ L+E Q Sbjct: 62 LEGGYKATSSARLLSAMRRLFQYLYREKLRPDDPSALLSAPKLPQRLPKDLSEAQV---- 117 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL + ++ R+ A+L LLY GLR+SE + LT +I Q +R+ GKGDK R Sbjct: 118 -ERLLQAPNIDIPLELRDKAMLELLYATGLRVSELIGLTLSDISLRQGVVRVIGKGDKER 176 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL + +Y + P+ LN +F R + + F I+ G+ Sbjct: 177 LVPLGEEAVYWLEQYMEHGRPWLLNGQTLDVMFPSNRAQQMTRQTFWHRIKHYATLAGID 236 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H +RH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Q Sbjct: 237 SEKLSPHVMRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQ 292 Query: 317 THP 319 HP Sbjct: 293 HHP 295 >gi|293394605|ref|ZP_06638899.1| tyrosine recombinase XerD [Serratia odorifera DSM 4582] gi|291422914|gb|EFE96149.1| tyrosine recombinase XerD [Serratia odorifera DSM 4582] Length = 299 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 91/303 (30%), Positives = 156/303 (51%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ER L++ TL SY D + + +LA + + + + + +++AF+++R Sbjct: 10 EQFLDALWLERNLAENTLASYRLDLQALVNWLAQHNSDLLQAEAL------DLQAFLAER 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K+ + + + K LP+ L+E Q Sbjct: 64 VEGGYKASSSARLLSAMRRLFQYLYREKMRADDPTALLASPKLPQRLPKDLSEAQI---- 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + LL + ++ R+ A+L +LY GLR+SE + L+ ++ Q +R+ GKG+K R Sbjct: 120 -DALLQAPCVDQPLELRDKAMLEVLYATGLRVSELVGLSISDVSLRQGVVRVIGKGNKER 178 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL I Y + P+ +N LF R + + F I+ G+ Sbjct: 179 LVPLGEEAVYWIENYLEHGRPWLVNGQTIDVLFPSQRCQQMTRQTFWHRIKHYAILAGID 238 Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Q Sbjct: 239 SERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQQ 294 Query: 317 THP 319 HP Sbjct: 295 HHP 297 >gi|89257003|ref|YP_514365.1| integrase/recombinase [Francisella tularensis subsp. holarctica LVS] gi|115315363|ref|YP_764086.1| site specific recombinase XerD [Francisella tularensis subsp. holarctica OSU18] gi|156503203|ref|YP_001429268.1| tyrosine recombinase XerD/ phage integrase family protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009383|ref|ZP_02274314.1| tyrosine recombinase XerD [Francisella tularensis subsp. holarctica FSC200] gi|254368256|ref|ZP_04984276.1| integrase/recombinase [Francisella tularensis subsp. holarctica 257] gi|254369853|ref|ZP_04985863.1| integrase/recombinase [Francisella tularensis subsp. holarctica FSC022] gi|290954477|ref|ZP_06559098.1| integrase/recombinase [Francisella tularensis subsp. holarctica URFT1] gi|295312082|ref|ZP_06802895.1| integrase/recombinase [Francisella tularensis subsp. holarctica URFT1] gi|89144834|emb|CAJ80173.1| Integrase/recombinase [Francisella tularensis subsp. holarctica LVS] gi|115130262|gb|ABI83449.1| site specific recombinase XerD [Francisella tularensis subsp. holarctica OSU18] gi|134254066|gb|EBA53160.1| integrase/recombinase [Francisella tularensis subsp. holarctica 257] gi|156253806|gb|ABU62312.1| tyrosine recombinase XerD/ phage integrase family protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|157122812|gb|EDO66941.1| integrase/recombinase [Francisella tularensis subsp. holarctica FSC022] Length = 292 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 94/300 (31%), Positives = 146/300 (48%), Gaps = 18/300 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L NL +E GLS+ T+ SY D L FL Y + I L + ++ AFIS R Sbjct: 8 FLDNLWLEHGLSQNTISSYRTD----LKFLQNYFAKTDLIS----LDFEQLYAFISYRSK 59 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 S R +S ++ F +L T + + K + LP+ + E Sbjct: 60 NGYSSHSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDV-----E 114 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LL T+ + R+ A+L L+Y GLR+SE + L +I + +++ GKG K RIV Sbjct: 115 RLLQAPDMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDININIGVIQVMGKGSKERIV 174 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ + + +Y+ L+ N + +F K + F I+ G+ Sbjct: 175 PIGEYALEYLQKYFAEARTSLSKNFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTD 234 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLRS+Q +LGH +STT IYT+++ + EIY + HP Sbjct: 235 ISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR----LQEIYQKHHP 290 >gi|313199950|ref|YP_004038608.1| tyrosine recombinase xerc [Methylovorus sp. MP688] gi|312439266|gb|ADQ83372.1| tyrosine recombinase XerC [Methylovorus sp. MP688] Length = 298 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 91/297 (30%), Positives = 154/297 (51%), Gaps = 19/297 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +L ER LS LT ++Y+ D + + L E + + ++ T IR ++ Sbjct: 8 YLDHLSHERRLSPLTRENYQRDLK---VLLELNGEVPL-----QNMTGTHIRRHVATLHG 59 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + +G RS+ R LS + F ++L +R + + +R K SLP AL+ QA+ LV Sbjct: 60 RNLGGRSIARMLSAWRGFFEFLIQRHGFSANPCQGIRAPKSPKSLPHALSPDQAVQLV-- 117 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + + + R+ A+L L Y GLR++E ++L + + T+ + GKG+K RIV Sbjct: 118 ----SIDDEDTLAQRDHAMLELFYSSGLRLAELVNLNLDALNLGEGTITVTGKGNKTRIV 173 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 P+ A L+ + L + LF GK L+ Q ++Q G+ + Sbjct: 174 PVGQHAMNA-LQAWLAIRSGLPIQDTSALFLSRLGKRLSRRAVQYRLQQWAIRQGINIRV 232 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 H LRHSFA+H+L + GDLR++Q +LGH +STTQ+YT+++ + + ++YD T Sbjct: 233 HPHMLRHSFASHVLQSSGDLRAVQEMLGHANISTTQVYTHLDFHH----LAKVYDST 285 >gi|116492850|ref|YP_804585.1| tyrosine recombinase XerD subunit [Pediococcus pentosaceus ATCC 25745] gi|116103000|gb|ABJ68143.1| tyrosine recombinase XerD subunit [Pediococcus pentosaceus ATCC 25745] Length = 295 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 93/305 (30%), Positives = 158/305 (51%), Gaps = 23/305 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L +L++ERGLS T+ SY + R +L T+EKIT I+++ I ++ + + Sbjct: 7 DYLHSLKVERGLSDNTIISYRQELRHLNDYL---TKEKIT--DIKKIDRYAILDYLDELK 61 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 S ++S ++ F KYL ++N+ K+++ LP L + Sbjct: 62 KTGRARSSSIHTISSLRKFFKYLLIVDKIDVDPMVNIDPPKRAHHLPSVLTTAEV----- 116 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 LL + + + R+ IL ++Y GLR+SE ++L + + + GKG+K RI Sbjct: 117 EKLLQVPNTNEPLGMRDRTILEVMYATGLRVSELITLNLNELHLEMGLIETIGKGNKKRI 176 Query: 200 VPLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYL 254 +P+ K + Y + + D N +F G PL G+++ Q+++ Sbjct: 177 IPIGDVAIKWLNRYINGPRRILLGDKKYN---EIFLNQHGHPLTRQGIWKNLKAQVKK-A 232 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ + T HTLRHSFATHLL NG DLR +Q +LGH +STTQIYT++ + ++++Y Sbjct: 233 GIEKNITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITQQR----LVDVY 288 Query: 315 DQTHP 319 D+ HP Sbjct: 289 DKYHP 293 >gi|288800351|ref|ZP_06405809.1| integrase/recombinase XerD [Prevotella sp. oral taxon 299 str. F0039] gi|288332564|gb|EFC71044.1| integrase/recombinase XerD [Prevotella sp. oral taxon 299 str. F0039] Length = 311 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 94/311 (30%), Positives = 165/311 (53%), Gaps = 18/311 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L+ L++ER S T+++Y+ D + + + + +Q ++ E AFI Sbjct: 13 RSYLRYLKLERNYSINTIEAYKNDLEHLITYCQENNRDVLKMQ----IADFEHFAFILHE 68 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R KIG S R LSG++SF +YL I ++ + + LP L+ ++ L Sbjct: 69 R--KIGASSQARILSGVRSFYRYLVIDGILEDNPTELLESPILGEHLPEVLSTEEVDQLQ 126 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 +++ L +KW RN AI+ +L+ CGLR+SE ++L NI + +R+ GKG K R Sbjct: 127 NSIDL-----SKWEGHRNRAIIEILFSCGLRVSELINLKLSNIYIIERYIRVIGKGSKER 181 Query: 199 IVPLLPSVRKAILE----YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 ++P+ KA+ E + D ++ Q +F RG L + I++ Sbjct: 182 LIPI---SDKALYELELWFRDRNIMNIKPGEQDYVFLNRRGAHLTRTMILIMIKKQAELA 238 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ + + HTLRHSFAT LL G DL +IQ++LGH +STT+IYT+++ ++ ++E + Sbjct: 239 GIKKTISPHTLRHSFATELLRGGADLIAIQAMLGHESVSTTEIYTHIDRESLRKAIIEHH 298 Query: 315 DQTHPSITQKD 325 + P T+++ Sbjct: 299 PRNKPKYTKEN 309 >gi|260910520|ref|ZP_05917188.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str. F0295] gi|260635362|gb|EEX53384.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str. F0295] Length = 304 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 83/286 (29%), Positives = 153/286 (53%), Gaps = 12/286 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +++ L++ER LS+ T+++Y D R L ++ ++ + ++ ++ ++ F + Sbjct: 15 YMRYLKLERNLSQNTIEAYRNDLRWLLAYVNYHG---LKVEAVK---LEDLDNFSASLHD 68 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q+I RS R LSG++SF K+L + + N+LP L+ + L + Sbjct: 69 QRITPRSQARILSGVRSFFKFLLLDGFIDADPTELLVSPHVRNALPDVLSTAEVDRLEAS 128 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + L +KW RN AI+ +L+ CGLR+SE ++L N+ ++ +R+ GKGDK R+V Sbjct: 129 IDL-----SKWEGQRNRAIIEVLFSCGLRVSELVNLKLSNLYVEEKFVRVTGKGDKERLV 183 Query: 201 PLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ + ++ D + + +F RG L + I++ G+ + Sbjct: 184 PISSRALDELNAWFADRNAMRIKPGEEDYVFLNRRGAHLTRTMILIMIKRQAVAAGITKT 243 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + HTLRHSFAT LL G DL +IQ+++GH ++TT+IYT++++ + Sbjct: 244 ISPHTLRHSFATALLEGGADLIAIQAMMGHEDIATTEIYTHIDTSS 289 >gi|294787035|ref|ZP_06752289.1| site-specific recombinase, phage integrase family [Parascardovia denticolens F0305] gi|315226683|ref|ZP_07868471.1| tyrosine recombinase XerC [Parascardovia denticolens DSM 10105] gi|294485868|gb|EFG33502.1| site-specific recombinase, phage integrase family [Parascardovia denticolens F0305] gi|315120815|gb|EFT83947.1| tyrosine recombinase XerC [Parascardovia denticolens DSM 10105] Length = 334 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 95/313 (30%), Positives = 150/313 (47%), Gaps = 42/313 (13%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L+ +GLS +L++YE D Q L FL + + IQ+I + +R ++S ++K+ Sbjct: 14 LKDSKGLSPQSLKAYESDVDQCLHFLCLHG--RTDIQSI---NTDYLRMWMSYE-SRKVA 67 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--- 141 SL R + ++ F YL K+ + + K +LP L +KQA+ L+D Sbjct: 68 KSSLARKIVAVRGFFAYLYTHKLIPSNPARPLGTPKLPKTLPAVLTQKQAVRLMDQAEEV 127 Query: 142 --------------------LLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQN 180 L E K +D R+ AI+ +LY G+R++E +SL + Sbjct: 128 CERDRDGQADRAETGKAKAELSKAEAEKKTLLDMRDDAIMEVLYATGIRVAELVSLDVDD 187 Query: 181 IMDDQSTLRIQGKGDKIRIVPL-LPSV----------RKAILEYYDLCPFDLNLNIQLPL 229 I T+++ GKG+K R+VP P+ R +L+ + + + Sbjct: 188 IDFTTRTVKVTGKGNKQRVVPFGKPAAEALDRWIRQGRDGLLDQAAPSAAQGSAADRSAV 247 Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289 F G RGK +N + + +L R G+P + H LRHS ATHLL G DLR +Q +LGH Sbjct: 248 FVGSRGKRINQRQVREVVHRLAREAGVP-DISPHALRHSAATHLLDGGADLREVQEMLGH 306 Query: 290 FRLSTTQIYTNVN 302 L TTQ YT+V+ Sbjct: 307 SSLQTTQRYTHVS 319 >gi|193212286|ref|YP_001998239.1| tyrosine recombinase XerD [Chlorobaculum parvum NCIB 8327] gi|193085763|gb|ACF11039.1| tyrosine recombinase XerD [Chlorobaculum parvum NCIB 8327] Length = 304 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 95/302 (31%), Positives = 150/302 (49%), Gaps = 17/302 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAF--YTEEKITIQTIRQLSYTEIRAFISKR 78 +L L IER S T +SY D ++L L E+ T IRQ FI + Sbjct: 15 FLNYLTIERNFSGNTRESYLNDLGRYLAHLQGQQVKPEEATPDHIRQ--------FIEEL 66 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S+ R++S I+S+ K+L +I + N+ K + +LP L ++ + L+ Sbjct: 67 HDIGLEASSVARNISAIRSYHKFLLAERIAQANPAENIHQPKLARTLPSVLTVEEMMALL 126 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + L H R+ A+L LLY G+R+SE + L N+ D+ +R+ GKG K R Sbjct: 127 EAPL--RRHPPGSFMLRDKAMLELLYATGIRVSELIGLGKLNLYLDEGFIRVFGKGSKER 184 Query: 199 IVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ + K + Y + L P ++ + LF RG L+ +RQ G+ Sbjct: 185 LVPVGRNATKWLKRYLEELRPGMVSATSKDVLFLNSRGGKLSRMSAWNIVRQHAIIAGIE 244 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + HT RHSFATHLL G DLR++Q +LGH + TQIYT+++ ++ E++ Sbjct: 245 KPISPHTFRHSFATHLLEGGADLRAVQEMLGHSSIIATQIYTHIDR----SFVKEVHRTF 300 Query: 318 HP 319 HP Sbjct: 301 HP 302 >gi|329962342|ref|ZP_08300347.1| tyrosine recombinase XerD [Bacteroides fluxus YIT 12057] gi|328530203|gb|EGF57084.1| tyrosine recombinase XerD [Bacteroides fluxus YIT 12057] Length = 317 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 90/282 (31%), Positives = 143/282 (50%), Gaps = 13/282 (4%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 Q L++E+ LS TL +Y D + L FL EKI I + + +++ F + Sbjct: 22 QYLKLEKSLSPNTLDAYRTDLEKLLRFLE---AEKIDILAV---TLDDLQRFTAGLHDIG 75 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 I RS R LSGIKSF +L + K LP L ++ ++ V Sbjct: 76 IHPRSQARILSGIKSFFHFLVLADYLEGDPSELLEGPKIGFKLPEVLTVEEIDKIISTVD 135 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202 L T+ RN AIL LY CGLR+SE +L ++ D+ ++++GKG K R+VP+ Sbjct: 136 LSTNE-----GQRNRAILETLYSCGLRVSELCNLKISDLYFDEGFIKVEGKGSKQRLVPI 190 Query: 203 LPSVRKAILEYYDL--CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 P K I ++ + + + + +F G ++ + I++L G+ + Sbjct: 191 SPRAIKEIKNWFADRNEKWKIKKDFEDYVFLARWGNGISRIMIFHLIKELAEKAGITKNI 250 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ Sbjct: 251 SPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHID 292 >gi|262091726|gb|ACY25315.1| tyrosine recombinase XerD [uncultured actinobacterium] Length = 311 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 85/314 (27%), Positives = 159/314 (50%), Gaps = 34/314 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + IE+G S T+++Y D ++ FL + + +++Q+ I FI+ Sbjct: 8 ERFLTWMTIEQGRSPRTIEAYRRDLHRYEAFLVLKSCDVLSVQS------PVIEQFIASL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ----- 133 R + +S+ R + ++ +YL + ++ ++ + +K + +P+AL+E + Sbjct: 62 RAEGKAAKSVARMYAAVRMMHRYLIEERLRPDNPTSGVDGVKVPSGIPKALSEDEVARIL 121 Query: 134 -ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 ++T VD+ L R+ A+L LY G RISEA L+ ++ + +R+ G Sbjct: 122 ASVTGVDSFAL-----------RDRALLEFLYATGARISEACGLSLSDLDMESQLVRLFG 170 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-------LFRGIRGKPLNPGVFQR 245 KG K RIVP + A+ E+ + ++ Q +F G RG L+ R Sbjct: 171 KGSKERIVPFGSHAKAALEEWLGAGGRTMLVSEQWAKRDHADAVFLGSRGTRLSRQAAWR 230 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 +++ + + + H LRHS ATH+L +G DLR +Q +LGH +STTQ+YT V+++ Sbjct: 231 IVQKFAQIAEVGDEVSPHVLRHSCATHMLIHGADLRIVQELLGHASVSTTQVYTRVDNEV 290 Query: 306 GGDWMMEIYDQTHP 319 + ++Y ++HP Sbjct: 291 ----LFDMYKESHP 300 >gi|294102004|ref|YP_003553862.1| integrase family protein [Aminobacterium colombiense DSM 12261] gi|293616984|gb|ADE57138.1| integrase family protein [Aminobacterium colombiense DSM 12261] Length = 294 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 101/316 (31%), Positives = 161/316 (50%), Gaps = 29/316 (9%) Query: 9 IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68 +V FE + ++L L +ERG S+ T+ +Y D + +L F Q +Y Sbjct: 1 MVKFEYDQLLDDFLDYLFLERGCSENTILAYNRDIKAWLDF----------CDKNDQPAY 50 Query: 69 TEIRAFISK--RRTQKIGDR--SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 + ++ + R + G + S +R+++ ++S+L+YL K+ E L LK +S Sbjct: 51 PPNQTYLERYQRSLHEEGKKRSSQQRAIASLRSWLRYLDSEKLVEEEVTLPTLPLK-GDS 109 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 LP LNE + V+ + S + ++ R+ AIL YGCGLR SE ++ ++I Sbjct: 110 LPHILNEGE----VERIFEACSGNS-FLALRDRAILETAYGCGLRASELCTICLRDIDFS 164 Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 TLRI GKG K RI+P L V + + Y + D ++ LF G PL Sbjct: 165 GRTLRIFGKGGKERIIPFLGEVSRRVGFYMEKARPDAHVQ---ELFISKTGNPLRREDIW 221 Query: 245 RYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 R +++ G+ S H LRHSFATHLL G DLR++Q +LGH ++TT+ Y + + Sbjct: 222 RIVKKRGAAAGISSSRLFPHILRHSFATHLLRRGMDLRTLQELLGHATIATTEKYVHFDL 281 Query: 304 KNGGDWMMEIYDQTHP 319 + + +IYD+THP Sbjct: 282 E-----LRDIYDKTHP 292 >gi|145634691|ref|ZP_01790400.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittAA] gi|145268236|gb|EDK08231.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittAA] Length = 297 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 90/295 (30%), Positives = 153/295 (51%), Gaps = 17/295 (5%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 IE+GLS+ T+QSY D +L + ++++T L +++ F+ +R + Sbjct: 16 IEKGLSENTVQSYRLDLTALCDWL---DKNDLSLET---LDAVDLQGFLGERLEKGYKAT 69 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R LS ++ +YL + K + + + K + LP+ L E+Q + LL+T Sbjct: 70 STARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQV-----SDLLNTP 124 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 ++ R+ A+L LLY GLR++E +SLT +N+ Q +R+ GKG+K RIVP+ Sbjct: 125 DVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184 Query: 207 RKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHT 264 + ++ P LN +F R + + F ++ + T + H Sbjct: 185 AYWVRQFMLYGRPVLLNRQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADTLSPHV 244 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LRH+FATHL+++G DLR +Q +LGH LSTTQIYT+V + + ++++ HP Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER----LKRLHERFHP 295 >gi|330447418|ref|ZP_08311067.1| tyrosine recombinase XerD [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491609|dbj|GAA05564.1| tyrosine recombinase XerD [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 298 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 94/303 (31%), Positives = 152/303 (50%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + +ERGLS+ TL SY D + L +L + I + S +++ + Sbjct: 9 ERFLDAMWMERGLSENTLASYRNDLMKLLNWLKQESRNVINV------SVDDLQRYQQWL 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S R +S I+ +YL + K+ + + K LP+ L+E Q L+ Sbjct: 63 FDKDYKQTSRARMVSAIRRLFQYLHREKMRDDDPSAMLVTPKLPKRLPKDLSEAQVDALL 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D ++ I+ R+ A+L LLY GLR++E ++LT +NI Q +RI GKGDK R Sbjct: 123 DAPDVNDP-----IELRDKAMLELLYATGLRVTELVTLTMENISLRQGVVRITGKGDKER 177 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ + I ++ + P L LF R + + F I+ G+ Sbjct: 178 LVPMGENAIDWIEQFIETGRPQLLGEKSSDVLFPSRRARQMTRQTFWHRIKHYAVLAGID 237 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 T + H +RH+FATHLL+ G DLR +Q +LGH LSTTQIYT+V ++ + +++ Sbjct: 238 AETLSPHVMRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQT 293 Query: 317 THP 319 HP Sbjct: 294 HHP 296 >gi|78484754|ref|YP_390679.1| Phage integrase [Thiomicrospira crunogena XCL-2] gi|78363040|gb|ABB41005.1| tyrosine recombinase XerC subunit [Thiomicrospira crunogena XCL-2] Length = 317 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 93/328 (28%), Positives = 164/328 (50%), Gaps = 30/328 (9%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIF-LAFYTEEKITIQTIRQ-------- 65 + + Q +++ L++E S+ T+ +Y+ D L+F L Y E+ + + ++ Sbjct: 1 MSDYQRFIKQLKLENK-SEHTISNYQRDLMGLLVFYLGDYLEQPLDEKALKSDQAWAFLD 59 Query: 66 -------LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118 + ++AFI+ R Q I RS+ R LS I++F +L ++ + ++ Sbjct: 60 QFDDWQAIKLPVLQAFIAFRMQQGIAARSIARQLSAIRAFYAFLIEQGRANHNPAKGLKA 119 Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178 K+ +LP++L+ L++ L W D R+ AI +LY GLR+SE + L Sbjct: 120 PKQPKALPKSLDVDLTRQLLEQPL------KTWQDVRDQAIFEILYSGGLRVSELVELDL 173 Query: 179 QNIMDDQST--LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 +D ++ +R+ GKG K R P+ +KA+ + ++ D + +F GK Sbjct: 174 SPGLDGLASGWVRVLGKGQKERDAPVGQPAQKALHRWLEIRS-DYAQPGEQAVFVNRFGK 232 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 L Q + + GLP + H LRH+ ATH+L + GDLR++Q +LGH LSTTQ Sbjct: 233 RLGVRSIQTQLDKRTLQAGLPTKMSPHRLRHACATHVLESSGDLRAVQEMLGHANLSTTQ 292 Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSITQK 324 IYT ++ ++ + +YD+ HP +K Sbjct: 293 IYTKLDLQH----LATVYDKAHPRAKKK 316 >gi|319442272|ref|ZP_07991428.1| integrase/recombinase [Corynebacterium variabile DSM 44702] Length = 312 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 101/321 (31%), Positives = 155/321 (48%), Gaps = 38/321 (11%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 R++W ++L ERGLS TL++Y D ++L +L E +T+ T + +I FI+ Sbjct: 9 RRDWFRHLRTERGLSSNTLENYGRDADRYLTWL---EGEGLTVATA---TVADIERFITD 62 Query: 78 RRT--QKIGDR-----SLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRAL 129 R + G R S RSLS ++S + + R I ++ + + ++ LP+AL Sbjct: 63 LRKGHEVTGGRPLAQTSAARSLSTVRSLHAFAARDRGIPDAADAVPV--TQQRADLPKAL 120 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 Q L++ V + + + +D R+ A++ LLY G RISE L L +I Q T+ Sbjct: 121 TIDQVTALIEAVPV--GEDARPLDLRDRALVELLYSTGARISEVLDLNVDDIDRTQDTVL 178 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 ++GKGD R+VP+ A+ Y L L + G G L R+ Sbjct: 179 LRGKGDHERVVPVGTPALAAVDAY--LVRARPTLAARGSGRAGSDGAAL---FLTASGRR 233 Query: 250 LRRYLGLPLSTTA-----------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 +RR G + A H LRHSFATHLL+ G D+R +Q +LGH + TTQIY Sbjct: 234 MRRQSGFNVVAAAGEKAGLGKVSPHALRHSFATHLLAGGADIRVVQELLGHSHVVTTQIY 293 Query: 299 TNVNSKNGGDWMMEIYDQTHP 319 V D + E + +HP Sbjct: 294 AKVTP----DLLRESWALSHP 310 >gi|262273209|ref|ZP_06051025.1| tyrosine recombinase XerC [Grimontia hollisae CIP 101886] gi|262222787|gb|EEY74096.1| tyrosine recombinase XerC [Grimontia hollisae CIP 101886] Length = 305 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 87/301 (28%), Positives = 151/301 (50%), Gaps = 34/301 (11%) Query: 28 ERGLSKLTLQSYE---CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 ERGLS+ T +Y +FL+ + + +RQ++ +KR K G Sbjct: 21 ERGLSRHTETNYRQQLAACAEFLVGAGVSQWQDVDAAWVRQIAAQ------AKREQLKAG 74 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 +L+ LS ++SF ++ + + + K+ +LP+ L+ + N LL Sbjct: 75 SIALR--LSALRSFFDFMVADGVMAANPAKGVSAPKQGRTLPKNLDVDEV-----NQLLS 127 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + + R+ A++ L+YG GLR+SE + L +++ + LR+ GKGDK RIVP Sbjct: 128 VDADDP-LSVRDRAMMELMYGAGLRLSELIGLNVRDVAMRKGDLRVIGKGDKERIVPFTG 186 Query: 205 SVRKAILEYYDLCPFDLNLNIQL------PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 ++ ++ + L + QL LF GK ++P Q+ + + + + Sbjct: 187 MAKEWLINW-------LKVRNQLLKGPEDALFLSKLGKRISPRSVQKRMAEWGQKQAVSS 239 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 H LRHSFATH+L + GDLR++Q +LGH LSTTQ+YT+++ ++ + ++YD H Sbjct: 240 HINPHKLRHSFATHMLESSGDLRAVQELLGHADLSTTQVYTHLDFQH----LAKVYDAAH 295 Query: 319 P 319 P Sbjct: 296 P 296 >gi|304382767|ref|ZP_07365251.1| tyrosine recombinase XerD [Prevotella marshii DSM 16973] gi|304336086|gb|EFM02332.1| tyrosine recombinase XerD [Prevotella marshii DSM 16973] Length = 315 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 88/284 (30%), Positives = 154/284 (54%), Gaps = 12/284 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ L+++R S TL++Y D + L++L +E +T ++ ++ F ++ Sbjct: 15 YLRYLKLQRNYSGNTLEAYRRDLNRLLVYLK---QEGLTPTEVK---LEHLQHFSAQLYD 68 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 IG RS R LSG++SF ++L+ + + + LP L+ ++ L ++ Sbjct: 69 CGIGARSQARVLSGVRSFYRFLQLDGYMESDPSELLESPQIGTHLPEVLSTEEVDRLENS 128 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + L +K RN AI+ +L+ CGLR++E +SL N+ D+ +R+ GKG K R V Sbjct: 129 LDL-----SKPEGQRNRAIIEVLFSCGLRVTELVSLRLSNLYLDEGFIRVLGKGRKERFV 183 Query: 201 PLLP-SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ P ++++ L +YD + + +F RG L + I++ G+ + Sbjct: 184 PISPRAIKELKLWFYDRNELKIRAGEEDYVFLNRRGVHLTRTMILIMIKRQATEAGIQKT 243 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + HTLRHSFAT LL G DLR+IQ +LGH +STT+IYT++++ Sbjct: 244 ISPHTLRHSFATALLEGGADLRAIQVMLGHESISTTEIYTHIDT 287 >gi|284035039|ref|YP_003384969.1| integrase family protein [Spirosoma linguale DSM 74] gi|283814332|gb|ADB36170.1| integrase family protein [Spirosoma linguale DSM 74] Length = 298 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 89/302 (29%), Positives = 153/302 (50%), Gaps = 13/302 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q++L ++ E+ LS TL +Y D QF FL + I + + +R++I Sbjct: 5 QDFLAHIRYEKRLSHHTLTAYANDLEQFCTFLL----AECNIDQPERADFRHVRSWIVSL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S+ R ++ +++F +L +RK+ + ++ LK S LP+ + EK L+ Sbjct: 61 VESGMDKSSVNRKIATLRNFFGFLLRRKVIDFDPMSKIQALKASKRLPQYVEEKPMEMLL 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D++ + E R+ +L LLYG G+R+SE L ++ + T+ + GK +K R Sbjct: 121 DDIEFPDTFE----GLRDKLVLELLYGTGIRLSELTGLKTTDVNLYEKTIVVLGKRNKHR 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 IVPL + + I +Y L + + L +G P + QR +++ + Sbjct: 177 IVPLNQPLFELIQQYNLLKEKEFSGQADTAHLIVSDKGVAAYPVLIQRIVKRHLTLVTTL 236 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + + H LRH+FATHLL+ G DL +I+ +LGH L+ TQIYT+ + D + + YDQ Sbjct: 237 GTKSPHVLRHTFATHLLNRGADLNAIKDLLGHSSLAATQIYTHTSL----DQLKKTYDQA 292 Query: 318 HP 319 HP Sbjct: 293 HP 294 >gi|297183673|gb|ADI19798.1| site-specific recombinase xerd [uncultured alpha proteobacterium EB000_37G09] Length = 302 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 95/310 (30%), Positives = 151/310 (48%), Gaps = 20/310 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L L ERG+S+ TL Y+ D +A + ++ ++ +IR + K Sbjct: 12 HFLSALAAERGVSENTLFGYKND------LMALHDSMAVSFVV---MTADDIRQSVQKFY 62 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + + R++ R LS ++ F ++ I ++ L + N K + LP++LNE V Sbjct: 63 IEGLAARTVSRRLSAVRQFAGWMVSDHIRQDNPSLFLDNPKLPDPLPKSLNEAD----VS 118 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 +++ S D A L L+Y GLRISE LSL Q+ D+ L I+GKG + R+ Sbjct: 119 SLITACSKLEPPYDLLMQAGLELMYSAGLRISELLSLRLQDFTADKDMLLIRGKGGRERM 178 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PL 258 VPL + D D + + G R + + F ++Q+ R+ L Sbjct: 179 VPLTAIAIATARRWRDARDAD-GPDAETDQLLGYRSQEMTRQKFSLLLKQVARHADLDER 237 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 +AH LRHSFATHLL+ G DLRS+Q +LGH ++TTQIYT D + + H Sbjct: 238 KVSAHVLRHSFATHLLNRGADLRSLQMLLGHADIATTQIYTRTRQ----DRLAGLVSDAH 293 Query: 319 PSITQKDKKN 328 P + + D+K Sbjct: 294 P-LAESDRKE 302 >gi|225351391|ref|ZP_03742414.1| hypothetical protein BIFPSEUDO_02985 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157735|gb|EEG71018.1| hypothetical protein BIFPSEUDO_02985 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 317 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 90/317 (28%), Positives = 154/317 (48%), Gaps = 27/317 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L ++++ERGLSK T+ +Y D +++ +LA + I ++ ++ +I Sbjct: 9 RQFLAHIDVERGLSKATVSAYGADLKKYRQWLA-----DQGVGGIAAVTTQDVERYIVFL 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 RS R L+ I + ++ I + ++ K ++LP L + L+ Sbjct: 64 DESGESSRSKARRLASIHALHRFAVNEHIVVDDVSAQVKAPKGVSTLPDVLTVDEVARLL 123 Query: 139 DNVLLHTSHETKWIDA---------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 D++ + + E + + R+ A+L +Y G R+SEA ++ D R Sbjct: 124 DSIPVSQNREHDGVVSEFPDDPVMLRDKALLEFMYAIGARVSEACGANLDDVDVDGRIAR 183 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQ 244 + GKG K R+VP+ +AI+ Y L + P LF RGK L+ Sbjct: 184 LMGKGSKQRLVPVGSYACEAIIRYLHAGRPKLESKSKGPVERRALFLNKRGKRLSRQSVW 243 Query: 245 RYIRQL--RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 IR R ++ PL HTLRHSFATHL+ G D+R++Q +LGH ++TTQIYT+++ Sbjct: 244 EIIRGAGERAHIDKPLHP--HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHIS 301 Query: 303 SKNGGDWMMEIYDQTHP 319 +N ++E Y +HP Sbjct: 302 PEN----LIETYLMSHP 314 >gi|149920280|ref|ZP_01908751.1| integrase/recombinase XerD [Plesiocystis pacifica SIR-1] gi|149818867|gb|EDM78307.1| integrase/recombinase XerD [Plesiocystis pacifica SIR-1] Length = 302 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 90/304 (29%), Positives = 153/304 (50%), Gaps = 18/304 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++LQ+L++ER LS TL++Y D R+ L L+ E+ + Q+S + F+ Sbjct: 12 EDYLQHLKVERNLSPNTLEAYGNDLRRLLDALSGAGVERAS-----QVSPAALLGFLRSL 66 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + RS R ++ ++L+ ++ + K N LP L+ ++ + L+ Sbjct: 67 AEAGLSARSQARRWVAVRGLFRWLRSEQLVEVDPTQGIALPKAVNKLPELLSREEVVRLI 126 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + T + R++A+L +Y G R+SEA L ++ DQ + + GKG K R Sbjct: 127 AAPGVDTP-----LGLRDTALLEFMYATGCRVSEACDLELSSLHLDQGLVVLTGKGSKQR 181 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRGIRGKPLN-PGVFQRYIRQLRRYLG 255 +VPL A+L + + +L + +F RG L+ G F R +RQ G Sbjct: 182 MVPLGDCALVALLAWLEEGRPELVARAPREAHVFVNKRGSRLSRQGCFFR-LRQHAVSAG 240 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + H LRHSFATHL+ G DLR++Q++LGH +STTQ+YT+++ + + YD Sbjct: 241 ITRDISPHKLRHSFATHLIEGGADLRAVQTLLGHADISTTQVYTHLSQSH----VRHAYD 296 Query: 316 QTHP 319 HP Sbjct: 297 LHHP 300 >gi|254780490|ref|YP_003064903.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter asiaticus str. psy62] gi|254040167|gb|ACT56963.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter asiaticus str. psy62] Length = 67 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 64/71 (90%), Positives = 65/71 (91%), Gaps = 4/71 (5%) Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 +STTAHTLRHSFATHLLSNGGDLRSIQSILGH RLSTTQIYTNVNSK MMEIYDQT Sbjct: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR----MMEIYDQT 56 Query: 318 HPSITQKDKKN 328 HPSITQKDKKN Sbjct: 57 HPSITQKDKKN 67 >gi|91202903|emb|CAJ72542.1| similar to site-specific tyrosine recombinase [Candidatus Kuenenia stuttgartiensis] Length = 298 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 93/299 (31%), Positives = 147/299 (49%), Gaps = 19/299 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +E +R S TL++Y D Q+L FL E + + +L + AF+ K+ Sbjct: 17 YLAYIENDRNYSPQTLRAYRNDLGQYLSFLK--GEGCTDLAGVTRLQLRKYLAFLKKKNP 74 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 K ++ R L+ I+S K+L + I + + ++ K LP ++ Sbjct: 75 SKT---TVARKLASIRSLYKFLCQHGILEYNPVEQIKTPKTDKKLPGFMSVNDT-----E 126 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 +LL+ R+ AI+ LY G+R+SE + + +I ++++GKG K RI+ Sbjct: 127 ILLNQPDTCNLSGLRDKAIMETLYSTGMRVSELVGINIADIDFHSGIVKVRGKGSKERIL 186 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 P+ AI Y + D N + L F G L R I + + + L Sbjct: 187 PVGNHALNAIQLYLEKRKAD-NEALFLNKFHG----RLTERSVARMIEKYMKKAAMHLRV 241 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HT RHSFATHLL NG DLR++Q LGH LSTTQIYT+V + + + ++YD+THP Sbjct: 242 SPHTFRHSFATHLLDNGADLRAVQEFLGHSSLSTTQIYTHVTT----ERLKQVYDKTHP 296 >gi|120403198|ref|YP_953027.1| site-specific tyrosine recombinase XerC [Mycobacterium vanbaalenii PYR-1] gi|119956016|gb|ABM13021.1| tyrosine recombinase XerC subunit [Mycobacterium vanbaalenii PYR-1] Length = 319 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 89/296 (30%), Positives = 141/296 (47%), Gaps = 10/296 (3%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +ERG S+ T ++Y D R FLA E+ +R L+ +R++++ + T Sbjct: 31 LALERGRSEHTRRAYLGDVRALFDFLA----ERRPGTGLRGLTLPVLRSWLAAQATAGAA 86 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 +L R S +K+F + +R + TE ++ K +LP L + QA +D Sbjct: 87 RSTLARRTSAVKTFTAWAVRRGLMTEDPAARLQVPKARRTLPSVLRQDQAREAMDAAK-S 145 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + + + R+ I+ +LY G+R+SE L ++ + LR+ GKG+K R VP Sbjct: 146 GAQQGDPLALRDRLIVEMLYATGIRVSELCGLDIDDVDTARRLLRVLGKGNKQRTVPYGD 205 Query: 205 SVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 A+ + D P + L G RG L+P + + Q + H Sbjct: 206 PAHAALTAWLSDGRPALVTAGSGAALLLGARGGRLDPRQARTVVHQTMAAVSGAPDIGPH 265 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LRHS ATHLL G DLR +Q +LGH L+TTQ+YT+V + ++DQ HP Sbjct: 266 GLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVTVAR----LRAVHDQAHP 317 >gi|238921200|ref|YP_002934715.1| tyrosine recombinase XerD, [Edwardsiella ictaluri 93-146] gi|238870769|gb|ACR70480.1| tyrosine recombinase XerD, putative [Edwardsiella ictaluri 93-146] Length = 299 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 96/303 (31%), Positives = 157/303 (51%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +E+ L++ TL SY D R +LA + +T+ T ++ +++ F ++R Sbjct: 10 EQFLDALWLEKNLAENTLASYRQDLRTLAEWLACH---DLTLLTA---AHGDLQDFFAQR 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + + + + + K LP+ L+E Q V Sbjct: 64 MDGGYKASSSARLLSALRRCYQYLYRETLRGDDPSALLASPKLPQRLPKDLSEAQ----V 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D +L S +T ++ R+ A+L LLY GLR+SE + L ++I Q +R+ GKG+K R Sbjct: 120 DALLQAPSIDTP-LELRDKAMLELLYATGLRVSELVGLAQEDISLRQGVVRVIGKGNKER 178 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL I Y + P+ +N LF R + + F I+ G+ Sbjct: 179 LVPLGEEAIYWIEYYLEYGRPWLVNGQTVAALFPSNRARQMTRQTFWHRIKHYAVLAGID 238 Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Q Sbjct: 239 GDRLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQ 294 Query: 317 THP 319 HP Sbjct: 295 HHP 297 >gi|310822341|ref|YP_003954699.1| Tyrosine recombinase XerC [Stigmatella aurantiaca DW4/3-1] gi|309395413|gb|ADO72872.1| Tyrosine recombinase XerC [Stigmatella aurantiaca DW4/3-1] Length = 300 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 99/302 (32%), Positives = 145/302 (48%), Gaps = 23/302 (7%) Query: 24 NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83 +LE E+G S T+++Y D F +L + + T + IR ++ Sbjct: 14 HLEHEKGASPHTVRNYLIDLVDFEKYLVGTMKLSLLAGT-----HAAIRGYLGTLSVDH- 67 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 S R L+ IKSF KYL ++K+ + S +++ K SLP+ L + +++ L Sbjct: 68 APASRGRRLASIKSFYKYLVRQKLLSASPAKLVKSPKLPKSLPKVLPVDEVFAILEMPSL 127 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL- 202 T + R+ AIL +LYG GLRISE L ++ +R+ GKG K R+ P+ Sbjct: 128 KT-----VLGLRDRAILEILYGGGLRISELCGLNLLDVDRSGRIVRVMGKGGKERLCPVN 182 Query: 203 LPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 PS+R LE Y +L +F RG L P R++ L Sbjct: 183 EPSIRA--LEAYLARRGELLATPHAGQDPEAMFLNYRGGRLTPRSIARHLDTYVVKCALT 240 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + H LRHSFATHLL G D+RSIQ +LGH LSTTQ YT+V + + ++YD Sbjct: 241 RKVSPHALRHSFATHLLGGGADVRSIQELLGHASLSTTQRYTHVTV----EQLQQVYDAA 296 Query: 318 HP 319 HP Sbjct: 297 HP 298 >gi|134301363|ref|YP_001121331.1| tyrosine recombinase/integrase XerD [Francisella tularensis subsp. tularensis WY96-3418] gi|187931093|ref|YP_001891077.1| tyrosine recombinase XerD [Francisella tularensis subsp. mediasiatica FSC147] gi|134049140|gb|ABO46211.1| tyrosine recombinase/integrase XerD [Francisella tularensis subsp. tularensis WY96-3418] gi|187712002|gb|ACD30299.1| tyrosine recombinase XerD [Francisella tularensis subsp. mediasiatica FSC147] Length = 292 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 94/300 (31%), Positives = 146/300 (48%), Gaps = 18/300 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L NL +E GLS+ T+ SY D L FL Y + I L + ++ AFIS R Sbjct: 8 FLDNLWLEHGLSQNTISSYRTD----LKFLQNYFAKTDLIS----LDFEQLYAFISYRSK 59 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 S R +S ++ F +L T + + K + LP+ + E Sbjct: 60 NGYSSHSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDV-----E 114 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LL T+ + R+ A+L L+Y GLR+SE + L +I + +++ GKG K RIV Sbjct: 115 RLLQAPDMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIV 174 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ + + +Y+ L+ N + +F K + F I+ G+ Sbjct: 175 PIGEYALEYLQKYFAEARRSLSKNFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTD 234 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLRS+Q +LGH +STT IYT+++ + EIY + HP Sbjct: 235 ISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR----LQEIYQKHHP 290 >gi|330444894|ref|ZP_08308549.1| tyrosine recombinase XerC [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489204|dbj|GAA03046.1| tyrosine recombinase XerC [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 297 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 91/302 (30%), Positives = 154/302 (50%), Gaps = 16/302 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L ER LS T Q+Y+ RQ E + +++ +Q+ +R SK + Sbjct: 12 LRSERELSLHTQQNYK---RQLTRIAEQLVE--LKVESWQQVDAGWVRQIASKGMRDGLK 66 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 SL LS ++SF +L + + + + +KS LP+ L+ + L+D Sbjct: 67 ASSLAMRLSALRSFFDFLVHQNVLKANPAKGVAAPRKSRPLPKNLDVDEMNQLLD----- 121 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 +E + R+ A++ L+YG GLR+SE + + +NI + LR+ GKGDK RIVP Sbjct: 122 -VNEDDPLAIRDRAMMELMYGAGLRLSELVGIDLRNISLSKGDLRVIGKGDKERIVPFSG 180 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 R+ + ++ L + Q LF G ++ Q+ + + + + H Sbjct: 181 LAREWVAKWLKLRDSIAQADEQ-ALFVSKLGHRISTRNVQKRMAEWGQKQAVSSHINPHK 239 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 LRHSFATH+L + GDLR++Q +LGH LSTTQIYT+++ ++ + ++YD+ HP ++ Sbjct: 240 LRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LAKVYDEAHPRAKKR 295 Query: 325 DK 326 +K Sbjct: 296 NK 297 >gi|295398591|ref|ZP_06808623.1| tyrosine recombinase XerD [Aerococcus viridans ATCC 11563] gi|294973192|gb|EFG48987.1| tyrosine recombinase XerD [Aerococcus viridans ATCC 11563] Length = 309 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 95/317 (29%), Positives = 164/317 (51%), Gaps = 17/317 (5%) Query: 6 LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65 + E VS +L + +++L + +E GL++ ++ SY+ + + + +L EK+ Q I Q Sbjct: 5 IEERVSMKLTEVIEDFLNTMRVEEGLAENSIISYKQELNRMMTYLNRQGIEKV--QVISQ 62 Query: 66 LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 + + ++ + + + +S ++ F +YLK + ++ + + KK+ L Sbjct: 63 DTVLDHLKWMDE---DHLATSTRSHYVSTLRHFFRYLKLDGVIEDNPMEKISLPKKTQHL 119 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 P L L VD +L T TK + R+ +L LY G+R+SE + + ++I D Sbjct: 120 PAVL----TLDEVDRILA-TPDITKPLGLRDRTLLETLYSTGMRVSEIIHIKLEDIHLDM 174 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGV 242 ++ GKG K R+VP+ I +Y L Q LF RGKPL+ Sbjct: 175 GFIQTIGKGGKERLVPIGEMAEDWINKYLTEGRPKLVKDEDETQGYLFVNNRGKPLSRQG 234 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + ++++ + + HTLRHSFATHLL NG DLR +Q +LGH +STTQIYT+++ Sbjct: 235 VWKNLKKMVMMAHITKDISPHTLRHSFATHLLENGADLRVVQELLGHSDISTTQIYTHIH 294 Query: 303 SKNGGDWMMEIYDQTHP 319 +++ M +IY+Q HP Sbjct: 295 AQH----MKDIYNQNHP 307 >gi|300781243|ref|ZP_07091097.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030] gi|300532950|gb|EFK54011.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030] Length = 298 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 88/301 (29%), Positives = 146/301 (48%), Gaps = 16/301 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL +L +ERGLS TL +Y D +++ +L E + ++ +++ +++ R Sbjct: 10 WLDHLAVERGLSANTLSNYRRDVDRYVTWL-----ESAGKTDLNSVTASDLGDYVADLRR 64 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + S R+L + K+ + K LP L+ ++ L+D Sbjct: 65 GGLAASSAGRALVVARGLHKFATVEGAVAADVAAGVSPPKTGEKLPDTLSIEEVGLLLDA 124 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIR 198 T D R+ A+L +LY G R+SE L L +++ +D + +++ GKG+K R Sbjct: 125 CPTDTP-----ADLRDKALLEVLYATGARVSEVLGLVVDDVVGLEDGTFIKVTGKGNKQR 179 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 IVP+ + R A+ Y L+ LF RG L+ I++ G+ Sbjct: 180 IVPVGSAARDAVEAYLVRGRPALSKGKTHALFLNKRGGALSRQSAWTVIKEAAGRAGVDK 239 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + HTLRHSFATHLL G D+R++Q +LGH ++TTQIYT+V +N + E++ H Sbjct: 240 HISPHTLRHSFATHLLEGGADVRTVQELLGHASVTTTQIYTHVTPEN----LREVWRTAH 295 Query: 319 P 319 P Sbjct: 296 P 296 >gi|145636556|ref|ZP_01792224.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittHH] gi|145270381|gb|EDK10316.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittHH] Length = 297 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 94/298 (31%), Positives = 155/298 (52%), Gaps = 23/298 (7%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 IE+GLS+ T+QSY D +L + ++++T L +++ F+ +R + Sbjct: 16 IEKGLSENTVQSYRLDLTALCDWL---DKNDLSLET---LDAVDLQGFLGERLEKGYKAT 69 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R LS ++ +YL + K + + + K + LP+ L E+Q + LL+T Sbjct: 70 STARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQV-----SDLLNTP 124 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS- 205 ++ R+ A+L LLY GLR++E +SLT +N+ Q +R+ GKG+K RIVP+ Sbjct: 125 DVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184 Query: 206 ---VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-T 261 VR+ IL P LN +F R + + F ++ + T + Sbjct: 185 AYWVRQFILYGR---PVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADTLS 241 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRH+FATHL+++G DLR +Q +LGH LSTTQIYT+V + + ++++ HP Sbjct: 242 PHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER----LKRLHERFHP 295 >gi|319937629|ref|ZP_08012033.1| tyrosine recombinase xerC [Coprobacillus sp. 29_1] gi|319807271|gb|EFW03883.1| tyrosine recombinase xerC [Coprobacillus sp. 29_1] Length = 301 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 89/305 (29%), Positives = 150/305 (49%), Gaps = 19/305 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +L L+ ++ S LT+ Y+ + F+++L K I + + Y +R ++++ Sbjct: 9 QEYLDVLKYQKNYSSLTIDGYKREIEHFIVYL-----NKENICDFKDVRYPFLRGYLAQL 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 ++ + +++ +S ++ +YL+ + ++ L + +LK+ P L + + L+ Sbjct: 64 HSENLSPKTINHKMSSLRGLYRYLQTQGYIDDNPFLLIDSLKQPLRNPDFLYIDEMMDLL 123 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D++ T + RN A+L L+Y GLR SE + LT I ++ L I GKG+K R Sbjct: 124 DSIDTQT-----LLGRRNKALLELMYASGLRCSEVVELTLSQIDFERQLLLIHGKGNKDR 178 Query: 199 IVPLLPSVRKAILEYYDLCPFDL----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 VP + Y + +L +L Q K N G+ R +RY Sbjct: 179 YVPFHDYAADWLKTYIEEDRPELMAVKHLEHQFVFVNKNGAKMTNRGIEDIVNRVTQRYD 238 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 HT RHSFATHLL G D+R +Q +LGH LSTTQIYT+V +++ + E+Y Sbjct: 239 ATK-KVHPHTFRHSFATHLLEQGVDIRVVQELLGHSNLSTTQIYTHVTNQH----LKEVY 293 Query: 315 DQTHP 319 D HP Sbjct: 294 DHAHP 298 >gi|145637619|ref|ZP_01793275.1| tyrosine recombinase [Haemophilus influenzae PittHH] gi|145269216|gb|EDK09163.1| tyrosine recombinase [Haemophilus influenzae PittHH] Length = 325 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 97/306 (31%), Positives = 154/306 (50%), Gaps = 25/306 (8%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L IER +S TL +Y+ + LA + I + Q++ + +R +++ + Q + Sbjct: 12 LRIERQMSPHTLTNYQHQLDATIKILA-----QQDIHSWTQVTPSVVRFILAESKKQGLK 66 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 ++SL LS ++ FL +L ++ + + K+ LP+ ++ +Q V +L + Sbjct: 67 EKSLALRLSALRRFLSFLVQQGELKVNPTTGISAPKQGKHLPKNMDGEQ----VQQLLAN 122 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 S E ID R+ AIL L+Y GLR+SE L +I +R+ GKG+K R+VP Sbjct: 123 DSKEP--IDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGR 180 Query: 205 SVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 AI E+ + P D LF G ++ Q+ + GL Sbjct: 181 YASHAIQEWLKVRALFNPKDE------ALFVSQLGNRISHRAIQKRLETWGIRQGLNSHL 234 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 H LRHSFATH+L DLR++Q +LGH LSTTQIYT++N ++ + E+YDQ HP Sbjct: 235 NPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEVYDQAHPR 290 Query: 321 ITQKDK 326 +K+K Sbjct: 291 AKRKNK 296 >gi|110639767|ref|YP_679977.1| integrase [Cytophaga hutchinsonii ATCC 33406] gi|110282448|gb|ABG60634.1| integrase [Cytophaga hutchinsonii ATCC 33406] Length = 293 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 90/308 (29%), Positives = 151/308 (49%), Gaps = 30/308 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L E+ SK T SY+ D +L E + T +Y +R++I Sbjct: 5 FLTYLSFEKRYSKHTTVSYKNDLSNLSDYLLITYE----LSTPEHANYPMLRSWIVTLVD 60 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q++ +S+ R ++ ++S+ +L+K++ T+ L +R LK SLP + E+ L+D Sbjct: 61 QELEPKSINRKIACLRSYYHFLQKKEFITKDPTLKIRALKVKKSLPVFVAEENITDLLDK 120 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 S E R+ +L LLYG G+R+SE + L ++ Q T+++ GKG+K RI+ Sbjct: 121 FEFADSFE----GLRDKLVLELLYGTGIRLSELIGLKNADVNMFQKTIKVLGKGNKERII 176 Query: 201 PL---------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 P+ +++K + + F + N G+ + P R +R Sbjct: 177 PIHDTFITLAKAYTIKKKSESFSNNTEFFVVTN---------NGEQVYPMFIYRLVRMYL 227 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 + + H LRH+FATHLL+ G DL +I+ +LGH L+ TQ+YT+ N D + Sbjct: 228 DQVTTVDKRSPHVLRHTFATHLLNKGADLNAIKDLLGHTSLAATQVYTH----NSIDKLK 283 Query: 312 EIYDQTHP 319 I+DQ HP Sbjct: 284 AIFDQAHP 291 >gi|62258790|gb|AAX77820.1| unknown protein [synthetic construct] Length = 327 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 94/300 (31%), Positives = 146/300 (48%), Gaps = 18/300 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L NL +E GLS+ T+ SY D L FL Y + I L + ++ AFIS R Sbjct: 34 FLDNLWLEHGLSQNTISSYRTD----LKFLQNYFAKTDLIS----LDFEQLYAFISYRSK 85 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 S R +S ++ F +L T + + K + LP+ + E Sbjct: 86 NGYSSHSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDV-----E 140 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LL T+ + R+ A+L L+Y GLR+SE + L +I + +++ GKG K RIV Sbjct: 141 RLLQAPDMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIV 200 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ + + +Y+ L+ N + +F K + F I+ G+ Sbjct: 201 PIGEYALEYLQKYFAEARRSLSENFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTD 260 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLRS+Q +LGH +STT IYT+++ + EIY + HP Sbjct: 261 ISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR----LQEIYQKHHP 316 >gi|258616485|ref|ZP_05714255.1| phage integrase family site specific recombinase [Enterococcus faecium DO] Length = 225 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 83/235 (35%), Positives = 126/235 (53%), Gaps = 20/235 (8%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSN-SLPRALNEKQALTLVDNVLLHTSHETK 150 ++ ++SF +YL K ++ E N + +LKK N LPR E + L D+V + Sbjct: 2 IASLRSFYQYLLKEEVIKE-NPFSYVHLKKKNLRLPRFFYENEMQALFDSVAGDSP---- 56 Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210 +D RN A+L +LYG G+R+SE SL+ +I D + I GKG+K R PL + A+ Sbjct: 57 -LDLRNRALLEVLYGSGIRLSECSSLSVSDIDFDSEVMLIHGKGNKERYAPLGSFAQDAL 115 Query: 211 LEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 EY+ + + +I +F GKP+ P + + Q+ + L H Sbjct: 116 QEYFREGRQVLMTKYHEEHDI---VFVNHHGKPITPTGIEYVLNQMIKKSSLDSDIHPHM 172 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LRH+FATHLL+NG DLR++Q +LGH LSTTQIY +V ++ + + Y HP Sbjct: 173 LRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKES----LQKNYRSFHP 223 >gi|262091779|gb|ACY25367.1| site-specific recombinase XerD [uncultured actinobacterium] Length = 308 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 97/312 (31%), Positives = 156/312 (50%), Gaps = 26/312 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L +L+IERGL+ ++ +Y D +F IFL +++ ++ I F R Sbjct: 14 SFLNHLQIERGLAANSIAAYRRDLVKFSIFLGS--------KSLSEVDSNAINDFEISLR 65 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 K+ S+ R S ++SF K+L++ + L + K + LP+AL Q ++++D Sbjct: 66 EAKLSVASINRVDSTLRSFFKHLQQEYGYADPT-LEIAPQKSARRLPKALTISQIVSMID 124 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS-----LTPQNIMDDQ-STLRIQGK 193 E + I AR+ A+L LLY G R+SE + L+ + D + +TL+++GK Sbjct: 125 VAY----REGQPITARDQAMLELLYSSGARVSELIGINLNDLSSIDTSDGKVTTLKLRGK 180 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 G K RIVPL KA+ Y DL + + LF RG ++ + + Sbjct: 181 GAKERIVPLGSFATKAVENYLVRVRPDLASKSSKVTSALFLNSRGSRISRQSAWQMVLDA 240 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ + H RHS+ATHLL+ G D+R +Q +LGH ++TTQIYT + D + Sbjct: 241 ADAAGITEHVSPHVFRHSYATHLLNGGADIRVVQELLGHASVTTTQIYTLITI----DKV 296 Query: 311 MEIYDQTHPSIT 322 E Y THP T Sbjct: 297 RESYALTHPRAT 308 >gi|56707324|ref|YP_169220.1| integrase/recombinase [Francisella tularensis subsp. tularensis SCHU S4] gi|110669794|ref|YP_666351.1| integrase/recombinase [Francisella tularensis subsp. tularensis FSC198] gi|224456388|ref|ZP_03664861.1| integrase/recombinase [Francisella tularensis subsp. tularensis MA00-2987] gi|254370002|ref|ZP_04986009.1| site-specific recombinase [Francisella tularensis subsp. tularensis FSC033] gi|254874160|ref|ZP_05246870.1| integrase/recombinase [Francisella tularensis subsp. tularensis MA00-2987] gi|54114539|gb|AAV29903.1| NT02FT0289 [synthetic construct] gi|56603816|emb|CAG44787.1| Integrase/recombinase [Francisella tularensis subsp. tularensis SCHU S4] gi|110320127|emb|CAL08170.1| Integrase/recombinase [Francisella tularensis subsp. tularensis FSC198] gi|151568247|gb|EDN33901.1| site-specific recombinase [Francisella tularensis subsp. tularensis FSC033] gi|254840159|gb|EET18595.1| integrase/recombinase [Francisella tularensis subsp. tularensis MA00-2987] gi|282158450|gb|ADA77841.1| Integrase/recombinase [Francisella tularensis subsp. tularensis NE061598] Length = 292 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 94/300 (31%), Positives = 146/300 (48%), Gaps = 18/300 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L NL +E GLS+ T+ SY D L FL Y + I L + ++ AFIS R Sbjct: 8 FLDNLWLEHGLSQNTISSYRTD----LKFLQNYFAKTDLIS----LDFEQLYAFISYRSK 59 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 S R +S ++ F +L T + + K + LP+ + E Sbjct: 60 NGYSSHSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDV-----E 114 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LL T+ + R+ A+L L+Y GLR+SE + L +I + +++ GKG K RIV Sbjct: 115 RLLQAPDMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIV 174 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ + + +Y+ L+ N + +F K + F I+ G+ Sbjct: 175 PIGEYALEYLQKYFAEARRSLSENFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTD 234 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLRS+Q +LGH +STT IYT+++ + EIY + HP Sbjct: 235 ISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR----LQEIYQKHHP 290 >gi|270291303|ref|ZP_06197525.1| tyrosine recombinase XerD [Pediococcus acidilactici 7_4] gi|270280149|gb|EFA25985.1| tyrosine recombinase XerD [Pediococcus acidilactici 7_4] Length = 295 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 95/303 (31%), Positives = 153/303 (50%), Gaps = 19/303 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L L++ERGLS T+ SY + R FL ++ I I+ + I ++ + Sbjct: 7 DYLHALKVERGLSDNTIVSYRQELRHLQNFL-----QEQHIADIKDVDRYTILNYLDALK 61 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 S ++S ++ F KYL + + N+ K++ LP L ++ Sbjct: 62 QTGRARSSSIHTISSLRKFFKYLLLNDQIQTNPMANIDPPKRAQHLPSVLTTEEV----- 116 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 LL +K + R+ AIL ++Y GLR+SE ++L + + + GKG+K RI Sbjct: 117 ERLLKVPDTSKPLGIRDRAILEVMYATGLRVSELIALNLNELHLEMGLIETVGKGNKQRI 176 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLN-PGVFQRYIRQLRRYLGL 256 +P+ V LE Y P L + +F G PL GV++ Q+++ G+ Sbjct: 177 IPI-GDVAIQWLERYINGPRRALLGAKRYNEIFLNQHGHPLTRQGVWKNLKAQVQK-AGI 234 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + T HTLRHSFATHLL NG DLR +Q +LGH +STTQIYT++ + ++++YD+ Sbjct: 235 KKNITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITQQR----LVDVYDK 290 Query: 317 THP 319 HP Sbjct: 291 YHP 293 >gi|167627279|ref|YP_001677779.1| site-specific recombinase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597280|gb|ABZ87278.1| site-specific recombinase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 292 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 98/301 (32%), Positives = 148/301 (49%), Gaps = 20/301 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L NL +E GLS+ T+ SY D L FL Y + I L + ++ AFIS R Sbjct: 8 FLDNLWLEHGLSQNTISSYRTD----LKFLQSYFSQVELIN----LDFEQLYAFISYRSK 59 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD- 139 RS R +S ++ F +L T + + K + LP+ + E VD Sbjct: 60 NGYSSRSNARMISTLRKFYNWLISTGQATTNPTTKLTLPKLAKRLPKDMTE------VDV 113 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 LL T I R+ A+L L+Y GLR+SE + L +I + +++ GKG K RI Sbjct: 114 ERLLQAPDLTDDIGIRDKAMLELMYATGLRVSELVGLNTHDIDLNVGVIQVMGKGSKERI 173 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VP+ + + +Y++ L N + +F K + F I+ G+ Sbjct: 174 VPIGEYALEYLHKYFEESRELLAKNFKEKAVFISKHSKRITRQSFWHRIKSYVLIAGINT 233 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + HTLRH+FATHLL++G DLRS+Q +LGH +STT IYT+++ + EIY + H Sbjct: 234 DISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR----LQEIYQKHH 289 Query: 319 P 319 P Sbjct: 290 P 290 >gi|182416388|ref|YP_001821454.1| tyrosine recombinase XerD [Opitutus terrae PB90-1] gi|177843602|gb|ACB77854.1| tyrosine recombinase XerD [Opitutus terrae PB90-1] Length = 317 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 93/302 (30%), Positives = 146/302 (48%), Gaps = 15/302 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + +ERGL+ T+ SY D Q LA + R ++ + +I Sbjct: 23 EAFLGYIALERGLAANTVASYRRDLDQAATHLA-----AQGARDWRAVTGEQAAGWIHSL 77 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + SL R LS ++S +L + + + + K S +P L E++ L+ Sbjct: 78 SSASYTVASLARKLSALRSLAHFLVRERFRADDFTALLSGPKASRRIPGTLTEEEIARLL 137 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 T + + + R+ A+L L Y GLR+SE L Q + + LR+ GKG K R Sbjct: 138 AAP---TGGDARAL--RDRALLELFYSSGLRVSELAGLLLQQVDLEHGFLRVFGKGAKER 192 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ +A+ Y P + LF G PL+ + +++ + GL Sbjct: 193 VVPIGGKAIEALATYLTAGRPHFVRSRTGSQLFLNKNGGPLSRVMLWMLVKKYAKRAGLT 252 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + H LRHSFATHLLS G DLR+IQ +LGH +STTQIYT+V S+ ++E +D+ Sbjct: 253 KNVKPHGLRHSFATHLLSGGADLRAIQEMLGHASISTTQIYTSVESQR----LLEQHDKF 308 Query: 318 HP 319 HP Sbjct: 309 HP 310 >gi|148981819|ref|ZP_01816536.1| site-specific tyrosine recombinase XerD [Vibrionales bacterium SWAT-3] gi|145960727|gb|EDK26067.1| site-specific tyrosine recombinase XerD [Vibrionales bacterium SWAT-3] Length = 304 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 97/305 (31%), Positives = 152/305 (49%), Gaps = 21/305 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA--FYTEEKITIQTIRQLSYTEIRAFIS 76 + +L + +ERGLS+ TL SY D + L ++ Y + I++ ++ + A Sbjct: 15 EQFLDAMWMERGLSENTLVSYRTDLSKLLTWMEQNNYRLDFISLSGLQDYQSWLVDADFK 74 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + S R LS I+ +YL + K+ + + + K LP+ L+E+Q Sbjct: 75 QT--------SRARMLSAIRRLFQYLHREKVRADDPSALLISPKLPQRLPKDLSEEQV-- 124 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 + LL I+ R+ A+L LLY GLR++E +SLT +NI Q +R+ GKG K Sbjct: 125 ---DALLDAPDPNDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGGK 181 Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 R+VP+ + I + + P L N +F R K + F I+ G Sbjct: 182 ERLVPMGENAVDWIESFIEQGRPQLLGENSSDVVFPSKRAKQMTRQTFWYRIKHYAVIAG 241 Query: 256 LPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 + + H LRH+FATHLL+ G DLR +Q +LGH LSTTQIYT+V ++ + +I+ Sbjct: 242 IDTELLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIH 297 Query: 315 DQTHP 319 Q HP Sbjct: 298 TQHHP 302 >gi|332289908|ref|YP_004420760.1| site-specific tyrosine recombinase XerC [Gallibacterium anatis UMN179] gi|330432804|gb|AEC17863.1| site-specific tyrosine recombinase XerC [Gallibacterium anatis UMN179] Length = 296 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 97/311 (31%), Positives = 155/311 (49%), Gaps = 23/311 (7%) Query: 19 QNWLQN----LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 Q+WL+ L IER LS TLQSY+ +Q + + T E IT RQ+ + IR Sbjct: 3 QDWLKKYWDYLRIERQLSAKTLQSYQ---QQIVACVELLTNEGIT--DWRQVDGSVIRFI 57 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 +++ + + + SL LS ++ F ++L + + + + K LP++++ + Sbjct: 58 LTQGKKSGLHEHSLALRLSSLRGFFQFLLRNQQIKVNPTDGISAPKAGKRLPKSIDAESI 117 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 L+D + R+ AI+ L+Y GLR+SE L ++I L++ GKG Sbjct: 118 SQLLD------IKSKDPLSLRDKAIMELMYSSGLRLSELRGLNLEDINFKARELKVLGKG 171 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRY 253 +K RI+P A+ ++ ++ L N Q LF G L Q+ + Q Sbjct: 172 NKERILPFGRYAAGALHQWLEV---RLQFNPQDNALFISHLGHRLTSSAIQQRLEQWGIK 228 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 GL H LRHSFATH+L DLR++Q +LGH LSTTQIYT++N ++ + ++ Sbjct: 229 QGLNAHLNPHKLRHSFATHMLEASSDLRAVQELLGHENLSTTQIYTHLNFQH----LAQV 284 Query: 314 YDQTHPSITQK 324 YD HP +K Sbjct: 285 YDSAHPRAKRK 295 >gi|294787053|ref|ZP_06752307.1| tyrosine recombinase XerD [Parascardovia denticolens F0305] gi|315226701|ref|ZP_07868489.1| tyrosine recombinase XerD [Parascardovia denticolens DSM 10105] gi|294485886|gb|EFG33520.1| tyrosine recombinase XerD [Parascardovia denticolens F0305] gi|315120833|gb|EFT83965.1| tyrosine recombinase XerD [Parascardovia denticolens DSM 10105] Length = 310 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 89/309 (28%), Positives = 153/309 (49%), Gaps = 20/309 (6%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 R+ +L + IE+GLS+ T ++YE D ++++ +LA + I Q+ ++ F++ Sbjct: 12 RELFLGYISIEKGLSEATRRAYESDLKKYMAWLARHG-----IDRPDQIRQEDVETFVAS 66 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 + RS+ R L+ I + ++L R + ++ K ++ LP L ++ Sbjct: 67 LSQEGESSRSIARRLASIHEYHRFLTSRGMAQADVSQGVKPPKAASVLPDVLTIEE---- 122 Query: 138 VDNVLLHTSHE--TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 V +L TS+E T + R+ A+L LY G R+SEA+ ++ D R+ GKG+ Sbjct: 123 VRRLLEKTSNERDTDPVVLRDRALLEFLYATGARVSEAVGANLTDVDLDDHFARLTGKGN 182 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPLNPGVFQRYIRQL 250 K R+VPL +A+ Y D L +F +GK L+ +++ Sbjct: 183 KQRLVPLGSYACQAMERYLDGPRAQLQAKAAKGAEVNAIFLNKKGKRLSRQSVWEIVQKA 242 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ HTLRHS ATHL+ G D+R +Q +LGH ++TTQIYT+++ + + Sbjct: 243 ADRAGITKEVHPHTLRHSCATHLIQGGADVRMVQELLGHASVTTTQIYTHISPQT----L 298 Query: 311 MEIYDQTHP 319 +E Y HP Sbjct: 299 IESYMGAHP 307 >gi|260219998|emb|CBA27096.1| Tyrosine recombinase xerC 1 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 321 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 89/320 (27%), Positives = 157/320 (49%), Gaps = 35/320 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ-TIRQLSYTEIRAFISK 77 + +L+ + +E+ L+ T++ Y D L +E+ T+R + IR ++++ Sbjct: 10 EKYLEFVRVEKRLAARTVELYSLD-------LGRLSEQATRAGVTMRDVRNHHIRRWVAQ 62 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 + R + LSG + F +L + + + + + ++R+ K LP+AL A+ Sbjct: 63 MHSAGRSGRGIALILSGWRGFYAWLGREGLVSSNPVQDVRSPKAPKPLPKALAVDDAVQF 122 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------ 191 D S++ W++AR++AI+ LLYG GLR+ E + L D + + +Q Sbjct: 123 AD----FESYDNAWLEARDAAIVELLYGSGLRVGELVGLDVVAGKDAKGWIDMQAAEAHV 178 Query: 192 -GKGDKIRIVPLLPSVRKAILEYYDL----------CPFDLNLNIQLPLFRGIRGKPLNP 240 GKG K R VP+ + +A+ + +L + LF G G L Sbjct: 179 LGKGSKRRSVPVGATAMQALQRWLELRGPSGTATAAPVDAAAAHAASALFTGRNGTRLTA 238 Query: 241 -GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 V+QR R+ + GL + H LRHSFA+H+L + GDLR +Q +LGH ++TTQ+YT Sbjct: 239 QSVWQRLKRR-SQLAGLNVPVHPHMLRHSFASHVLQSSGDLRGVQELLGHANITTTQVYT 297 Query: 300 NVNSKNGGDWMMEIYDQTHP 319 ++ ++ + + YD HP Sbjct: 298 RLDFQH----LAKAYDAAHP 313 >gi|94969887|ref|YP_591935.1| tyrosine recombinase XerC subunit [Candidatus Koribacter versatilis Ellin345] gi|94551937|gb|ABF41861.1| tyrosine recombinase XerC subunit [Candidatus Koribacter versatilis Ellin345] Length = 300 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 89/297 (29%), Positives = 142/297 (47%), Gaps = 23/297 (7%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87 E+ S T+++Y D +F FL + I + IR F+S + + S Sbjct: 19 EKNSSVHTIKAYTTDLEEFSAFLGPAKWDDI--------DHVRIRGFLSHLYDKGLSKPS 70 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 + R+L+ ++S K+L + ++ + K LPR ++ T++D + Sbjct: 71 VARALAALRSLYKWLAREGFVEQNPAALVATPKLPKKLPRVPTMEELNTVMDAEM----P 126 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207 E R++ I LLYGCG+R SE + +I + I+GKG K R VP + Sbjct: 127 EAASFPERDALIFELLYGCGIRNSELTGINLDDIRWSNEAILIRGKGKKERFVPFGDAAA 186 Query: 208 KAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 A Y L + N L R + + L R ++++ GLP Sbjct: 187 VAAKVYLKKRQDILAERHKSTNALLINLRDV--QRLTSRSVGRIVKKIAVARGLPADVHP 244 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HTLRH+F THLL G DLR+IQ +LGH RL+TTQ YT +++++ ++E+YD+THP Sbjct: 245 HTLRHAFGTHLLEEGADLRAIQELLGHERLATTQRYTQLSTRH----VLEVYDKTHP 297 >gi|300858733|ref|YP_003783716.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41] gi|300686187|gb|ADK29109.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41] gi|302206440|gb|ADL10782.1| Tyrosine recombinase XerC [Corynebacterium pseudotuberculosis C231] gi|302330996|gb|ADL21190.1| Tyrosine recombinase XerC [Corynebacterium pseudotuberculosis 1002] gi|308276682|gb|ADO26581.1| Tyrosine recombinase XerC [Corynebacterium pseudotuberculosis I19] Length = 293 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 86/301 (28%), Positives = 151/301 (50%), Gaps = 20/301 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +++++LE+ G S TL+ Y D F A E ++ + +R ++ + Sbjct: 10 DFIEHLELVSGRSPATLKGYRSDLNTF----AMRKPE------LKDFTLDNLRDWLGEAV 59 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + +L R ++ +S +L K+ + K LP+ L QA ++V+ Sbjct: 60 AEGKTRATLARRVAAARSMSSWLLKQGYIETDMAARLVAPKVGRHLPKVLAAGQAESVVE 119 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 H + +T+ AR+ A+L LLY G+R+SE + ++I + TL++ GKGDK R+ Sbjct: 120 ----HPASKTEAEFARDRAVLELLYATGIRVSELCGINLEDIDWRRKTLKVLGKGDKQRV 175 Query: 200 VPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VP + A+ + + P + LF G+RG L+P +R + + G+ Sbjct: 176 VPFGQAACDALTHWIETGRPAMCKDQSEAALFLGVRGGRLDPRQVRRLVDAAGKEAGIS- 234 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 H++RH+ ATH+L G DLR +Q +LGH L+TTQIYT+V+S+ + E + ++H Sbjct: 235 GLGPHSVRHTAATHMLDGGADLRIVQELLGHSSLNTTQIYTHVSSQR----LKEAFKRSH 290 Query: 319 P 319 P Sbjct: 291 P 291 >gi|32474160|ref|NP_867154.1| integrase/recombinase [Rhodopirellula baltica SH 1] gi|32444697|emb|CAD74699.1| integrase/recombinase [Rhodopirellula baltica SH 1] Length = 325 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 91/308 (29%), Positives = 152/308 (49%), Gaps = 30/308 (9%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +L L+ E L+ T+ +Y D ++F+ ++ +TI TE+ F++ Sbjct: 38 EFLVYLKRECHLADNTVAAYGRDMKRFVTWMDGRRPADLTI--------TELSDFVASLH 89 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + + S+ R++ I++F KYL+ IT ++ + K +P L+ + + Sbjct: 90 GEGLAPASISRAIVAIRTFFKYLQLEGITVDNPAELLATQKAWQRMPGVLSPNEVEAFLS 149 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 V ++ W R+ A+L +LY G R SE +L +++ D+ TLR GKGDK R+ Sbjct: 150 AV---KKSDSFW--QRDRALLEVLYATGCRASEVCTLRVRDLTLDEKTLRCHGKGDKQRM 204 Query: 200 VPLLPSVRKAILEY--------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 VP+ +AI Y D P ++ +L L RG GK L+ R +++ Sbjct: 205 VPIGGRAIRAIQLYLEESRHILADRNPGQID---ELFLSRG--GKALDRIQLWRLVKRYA 259 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 + G+ + H+LRHSFATHLL+ G DLR +Q +LGH + TTQIYT+V + Sbjct: 260 KRAGISDEISPHSLRHSFATHLLAGGADLRQVQEMLGHASIQTTQIYTHVEHSR----LQ 315 Query: 312 EIYDQTHP 319 ++ HP Sbjct: 316 RVHRDFHP 323 >gi|297584028|ref|YP_003699808.1| tyrosine recombinase XerC [Bacillus selenitireducens MLS10] gi|297142485|gb|ADH99242.1| tyrosine recombinase XerC [Bacillus selenitireducens MLS10] Length = 303 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 88/302 (29%), Positives = 150/302 (49%), Gaps = 17/302 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++++ L+IE+G S T+ Y+ D AF+ T + + +++ +IR +++ Sbjct: 14 RDYMRYLQIEKGASPSTISQYQKD------ICAFFQNMDHT-KPVEDVNHQDIRRYLALL 66 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + R++ R L+ ++S ++L++ + L + K LP L E + + Sbjct: 67 QKDGYARRTVARKLASLRSLWRFLEREGRIQLNPFLYVTTPKLDKKLPSFLYENEMQAIF 126 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + + ARN AI+ LLY G+R SE L ++I D STL + GKG K R Sbjct: 127 DAI-----DTDSLLGARNLAIIELLYASGIRASECTGLKLKDIDLDLSTLLVMGKGKKER 181 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +P+ +A+ Y D + Q PLF RG L ++ + ++ L Sbjct: 182 FLPVGSFAVEALSLYLDKRTAKFGPHAQSDPLFINYRGGALTDRGLRKILAKVIEDASLT 241 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T H +RH+FATH+L+ G DLR++Q +LGH L TQIYT+V D + ++Y + Sbjct: 242 SKLTPHVIRHTFATHMLNEGADLRTVQELLGHTDLKATQIYTHVTR----DRLRDVYRHS 297 Query: 318 HP 319 HP Sbjct: 298 HP 299 >gi|293400627|ref|ZP_06644772.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305653|gb|EFE46897.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 303 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 88/316 (27%), Positives = 153/316 (48%), Gaps = 34/316 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L +++ S T+ SY D +++L FL + I ++Y +++ F+ ++ Sbjct: 8 EDYLHYIQVVENKSLATVASYRNDLKEYLAFL-----DAHGFTAIEDVTYMDLQDFLKEQ 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + +K S+ ++ ++ F +YL L++ + K + LP N L+ Sbjct: 63 KVKK-KTSSVNHMITSLRMFHRYLTMTYPKIPDATLHICSSKTAKKLPTYFNVADIERLL 121 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D S + +D + A+L +LYGCGLR+SE L +Q L++ GKG+K R Sbjct: 122 D------SFQDSDMDIFHKALLEVLYGCGLRVSELTHLRLNMTHLEQGFLKVLGKGEKER 175 Query: 199 IVPLLPSVRKAILEYYDLC---------PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 +VP+ A+ +Y + PF +F RG+ ++ I+ Sbjct: 176 MVPMHQRSVHALQQYLEFVRPQWVKQRSPF---------VFLNSRGQNISRQYVHNLIKS 226 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 LGL +AH+ RHSFATHLL G DLR +Q +LGH ++TTQIYT++ +K Sbjct: 227 KLTALGLDERLSAHSFRHSFATHLLDGGADLRVVQELLGHADIATTQIYTHIQNKR---- 282 Query: 310 MMEIYDQTHPSITQKD 325 + + Y HP ++D Sbjct: 283 LQDAYASFHPRSKEED 298 >gi|116618278|ref|YP_818649.1| tyrosine recombinase XerC subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097125|gb|ABJ62276.1| tyrosine recombinase XerC subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 300 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 84/287 (29%), Positives = 139/287 (48%), Gaps = 9/287 (3%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 +E Q + LE ER S TL++Y D +F +L E ++ ++R ++ Sbjct: 4 REEQLYHDYLESERQYSPQTLKAYLTDIAEFKNYL----HESGGFTKFGEVQTLDVRVYL 59 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 + +K+ ++ R +S ++ F ++L + ++ ++ K N LP E + Sbjct: 60 NDLYEKKLARTTISRKISSLRMFYQFLITNQFAIDNPFDSISLKKHQNQLPDFFYEDELH 119 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L D H ++ RN+A+L LY G+R++E LT + Q + I GKG+ Sbjct: 120 ELFDVAYNHED----YLWERNAALLEFLYATGIRVAEIAGLTLSQLDFSQRLVLIHGKGN 175 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYL 254 K R VP + EY L +N + +F RG+P+ P + QL + Sbjct: 176 KDRYVPFGHFAENIMKEYITDLRASLTVNQEHEYVFVNHRGEPITPAGITYILNQLMQRS 235 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 L H LRH+FATHL++ G D+R++Q +LGH LSTTQ+YT+V Sbjct: 236 ALTGKIHPHMLRHTFATHLINRGADMRTVQELLGHVNLSTTQMYTHV 282 >gi|268591702|ref|ZP_06125923.1| tyrosine recombinase XerD [Providencia rettgeri DSM 1131] gi|291312661|gb|EFE53114.1| tyrosine recombinase XerD [Providencia rettgeri DSM 1131] Length = 300 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 96/303 (31%), Positives = 157/303 (51%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + +E+ L++ TL SY D + +L + ++Q+I ++++F ++R Sbjct: 11 EQFLDTIWLEQDLAENTLASYRNDLQLLDKWLDAHQLHLESVQSI------DLQSFFAER 64 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + KI + + K LP+ L+EKQ V Sbjct: 65 IDCGYKATSSARLLSAMRRLFQYLYREKIRLDDPSAVIAAPKIPQRLPKDLSEKQ----V 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 +++L + E ++ R+ A+L +LY CGLR+SE + LT +I Q +R+ GKGDK R Sbjct: 121 EDLLNAPATEDA-LELRDKAMLEVLYACGLRVSELIGLTFSDISLRQGVIRVVGKGDKER 179 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 ++PL + +Y D P LN LF RG + F I+ + Sbjct: 180 LIPLGEEAIYWLEKYIDEGRPDLLNGKTSDILFPSKRGTKMTRQTFWHRIKYYAVLAHID 239 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++Q Sbjct: 240 SELLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRVLHEQ 295 Query: 317 THP 319 HP Sbjct: 296 HHP 298 >gi|194335806|ref|YP_002017600.1| integrase family protein [Pelodictyon phaeoclathratiforme BU-1] gi|254799350|sp|B4SDZ2|XERC_PELPB RecName: Full=Tyrosine recombinase xerC gi|194308283|gb|ACF42983.1| integrase family protein [Pelodictyon phaeoclathratiforme BU-1] Length = 336 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 94/318 (29%), Positives = 160/318 (50%), Gaps = 21/318 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-EKITIQTIRQLSYTEIRAFISKR 78 ++L+ L + LS T+ +Y D QF FLA + +++ Q++ E+R F++ Sbjct: 22 DFLEKLSTLKNLSPNTVIAYRTDLFQFFSFLAQHLGLADLSLFDPEQVTTVEVRLFMAAL 81 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + RS+ R L+ +KSF +YL++ S + + +P L E+Q Sbjct: 82 IERGVRQRSIARKLASVKSFYRYLQESGHIRNSLFSALATPQYPKRVPGFLTEQQTEKFF 141 Query: 139 DNVLLHTSH----------ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 + +L ++ + +I R+ +IL LLY GLRISE + L + ++ + Sbjct: 142 NELLPQSAQGFRKPEKNELDESFICERDRSILELLYSSGLRISELIGLKVGELDLERGYV 201 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCP--FDL----NLNIQLPLFRGIRGKPLNPGV 242 ++ GKG K RIVP+ A+ +Y+++ F + + L +F GK L P + Sbjct: 202 KLTGKGRKQRIVPVGQQAVDALKKYFEVRRNFFRMKRTGDAGELLHVFVTKSGKKLYPML 261 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 QR R+ + H LRH+FATHLL++G DL S+ +LGH LSTT+IYT+V Sbjct: 262 VQRLTRKYLTSVTDQKKKNPHLLRHTFATHLLNSGADLNSVSDMLGHSNLSTTEIYTHVT 321 Query: 303 SKNGGDWMMEIYDQTHPS 320 + + E+Y + HP+ Sbjct: 322 F----ERLKEVYRKAHPN 335 >gi|57866964|ref|YP_188637.1| tyrosine recombinase XerD [Staphylococcus epidermidis RP62A] gi|293366542|ref|ZP_06613219.1| integrase/recombinase XerD [Staphylococcus epidermidis M23864:W2(grey)] gi|81674519|sp|Q5HP53|XERD_STAEQ RecName: Full=Tyrosine recombinase xerD gi|57637622|gb|AAW54410.1| tyrosine recombinase XerD [Staphylococcus epidermidis RP62A] gi|291319311|gb|EFE59680.1| integrase/recombinase XerD [Staphylococcus epidermidis M23864:W2(grey)] gi|329725406|gb|EGG61889.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU144] gi|329735284|gb|EGG71576.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU045] Length = 295 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 94/302 (31%), Positives = 151/302 (50%), Gaps = 15/302 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L ++IE+GLS T+ +Y D +++ +L E I I + I+ + Sbjct: 6 EEYLNFIQIEKGLSNNTIGAYRRDLKKYKDYL-----EDNKISHIDFIDRQIIQECLGHL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 +SL R +S I+SF ++ + K + + + K LP L + + Sbjct: 61 IDMGQSSKSLARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEIDEVI--- 117 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL T TK R+ +L LLY G+R++E + L +++ +R+ GKG+K R Sbjct: 118 --ALLETPDLTKNNGYRDRTMLELLYATGMRVTEIIQLDVEDVNLMMGFVRVFGKGNKER 175 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 IVPL +V + + Y + P L LF + GK L+ + I+Q + Sbjct: 176 IVPLGDTVIEYLTTYIETVRPQLLKQTTTQALFLNMHGKSLSRQGIWKIIKQYGLKANIN 235 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + T HTLRHSFATHLL NG DLR++Q +LGH +STTQ+YT+V+ + ++Y Q Sbjct: 236 KTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYTQF 291 Query: 318 HP 319 HP Sbjct: 292 HP 293 >gi|171742561|ref|ZP_02918368.1| hypothetical protein BIFDEN_01674 [Bifidobacterium dentium ATCC 27678] gi|283456353|ref|YP_003360917.1| Integrase/recombinase [Bifidobacterium dentium Bd1] gi|306822472|ref|ZP_07455850.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679] gi|309801397|ref|ZP_07695524.1| site-specific tyrosine recombinase XerC [Bifidobacterium dentium JCVIHMP022] gi|171278175|gb|EDT45836.1| hypothetical protein BIFDEN_01674 [Bifidobacterium dentium ATCC 27678] gi|283102987|gb|ADB10093.1| Integrase/recombinase [Bifidobacterium dentium Bd1] gi|304554017|gb|EFM41926.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679] gi|308221912|gb|EFO78197.1| site-specific tyrosine recombinase XerC [Bifidobacterium dentium JCVIHMP022] Length = 306 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 82/285 (28%), Positives = 147/285 (51%), Gaps = 14/285 (4%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L+ RGLS T ++Y D + + L E + + + +++ ++R ++S+ +++ Sbjct: 14 LKANRGLSDNTRKAYRGDLEECMTQL-----EILGCEDLNEVTIEDLRMWMSQS-SKRHA 67 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S+ R ++ F + +R +T + + K ++LP L+E QA L+D V Sbjct: 68 RSSMARKTVAVRGFFAWTHERGVTNANPAAMLMTPKIPDTLPAVLSESQAEKLMDCVDEQ 127 Query: 145 T------SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 S + + RN+A+L +LY G+R++E + L ++ D T+++ GKG+K R Sbjct: 128 MPKSRTKSVRKQAVGLRNAAMLEVLYATGIRVAELVGLDVHDVAFDNRTMKVTGKGNKQR 187 Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP ++I + D P + LF G +G ++ V ++ + + + G+P Sbjct: 188 VVPFGVPAEQSIRRWLEDGRPRLVRARSADALFLGAQGNRIDQRVVRQVVHECAQRAGVP 247 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + H LRHS ATHLL G DLR +Q +LGH L TTQ YT+V+ Sbjct: 248 -DISPHALRHSAATHLLDGGADLRQVQELLGHSSLKTTQRYTHVS 291 >gi|332289739|ref|YP_004420591.1| site-specific tyrosine recombinase XerD [Gallibacterium anatis UMN179] gi|330432635|gb|AEC17694.1| site-specific tyrosine recombinase XerD [Gallibacterium anatis UMN179] Length = 297 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 97/302 (32%), Positives = 155/302 (51%), Gaps = 19/302 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L + + LS+ T+ SY D L FL+ + E+ T++Q+ Y +++AF+ +R Sbjct: 10 FLDELWLGKNLSQNTIASYRSD----LKFLSEWLEKHHL--TLQQVQYLDLQAFLGERLQ 63 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q S R LS ++ +YL + K ++ + + K LP+ L E Q L Sbjct: 64 QGYKATSYSRMLSAMRKLFQYLYQEKYREDNPCSLLTSPKLPARLPKYLTESQVTDL--- 120 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 L+T ++ R+ A+L LLY GLR+SE +SLT NI Q +R+ GK DK R+V Sbjct: 121 --LNTPATENALELRDKAMLELLYATGLRVSELVSLTTNNINLQQGVVRVIGKADKERLV 178 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 P+ + ++ +L L Q LF +GK + F I+ + Sbjct: 179 PIGEEANYWVQQFILYGRAEL-LGGQSSDVLFPSRQGKLMTRQTFWYRIKHYASLANIDA 237 Query: 259 ST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + H LRH+FATHL+++G DLR +Q +LGH LSTTQIYT+V + + +++ + Sbjct: 238 DKLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER----LKQLHSKY 293 Query: 318 HP 319 HP Sbjct: 294 HP 295 >gi|300310183|ref|YP_003774275.1| site specific integrase/recombinase [Herbaspirillum seropedicae SmR1] gi|300072968|gb|ADJ62367.1| site specific integrase/recombinase protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 91/319 (28%), Positives = 155/319 (48%), Gaps = 17/319 (5%) Query: 3 GNNLPEIVSFELLKER-QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61 G P+I + + +E + +L +E GLSK TL++Y D ++ +L Y E + Sbjct: 2 GRTTPKIEAPAVSREAIDEFCDSLWLEDGLSKNTLEAYRRDMTRYAHWL--YQERA---K 56 Query: 62 TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121 + + ++ A+ + R Q S R L+ +K F + ++ L +R+ ++ Sbjct: 57 ALYETQAEDLNAYFAARHDQTKPSSS-NRRLAVLKRFFQLALRQHHVAADPCLKLRSARQ 115 Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 P+ L+E Q LL + + R+ A++ L+Y GLR+SE + L + Sbjct: 116 PQRFPKTLSEGQV-----EALLAAPDVSTPLGLRDRAMIELMYASGLRVSELVLLKSIEV 170 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNP 240 ++ LR+ GKG K R+VP ++ Y L + LF RG P+ Sbjct: 171 GMNEGVLRVTGKGSKTRLVPFGEEAGSWLMRYLAEARAQILQGQVDDALFVTARGGPMTR 230 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 +F I++ G+ + HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT+ Sbjct: 231 QMFWTLIKKYALQAGVTARLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTH 290 Query: 301 VNSKNGGDWMMEIYDQTHP 319 V + + +++ HP Sbjct: 291 VARER----LKQLHAAHHP 305 >gi|73539788|ref|YP_294308.1| site-specific tyrosine recombinase XerC [Ralstonia eutropha JMP134] gi|72117201|gb|AAZ59464.1| tyrosine recombinase XerC subunit [Ralstonia eutropha JMP134] Length = 339 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 91/322 (28%), Positives = 154/322 (47%), Gaps = 39/322 (12%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +L LE R L+ T+ SY D L L + + + L IRAF ++ Sbjct: 16 QRYLAWLEGSRKLAGHTISSYRRD----LTVLQAHAAKHAPGIALLALQTRHIRAFAARM 71 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTL 137 + + S+ R+LS + F + + + ++N ++ +R + + LP+AL+ + A+ L Sbjct: 72 HGEGLAGTSIARTLSAWRGFYLWAAQHGLGVQANPVDGVRAPRSGHRLPKALSVEHAVAL 131 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT----------PQNIMD-DQS 186 V + T R+ A+ L Y GLR++E + L +D + Sbjct: 132 VSHPA-----GTDAAALRDQAVWELFYSSGLRLAELVQLDVRYERLDGYESAGWLDLSGA 186 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDL---------CPFDLNLNIQLPLFRGIRGKP 237 L + GKG + R VP+ +A+ + + P D + LF G RG Sbjct: 187 ELTVTGKGSRRRTVPVGSKAMEALRAWLGVREQLLRPGAAPEDASA-----LFLGARGHR 241 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L+ V Q ++Q G+P H LRHSFATH+L + GDLR++Q +LGH ++TTQI Sbjct: 242 LSMRVVQMRLKQQAIRAGVPADVHPHMLRHSFATHMLQSSGDLRAVQELLGHASIATTQI 301 Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319 YT+++ ++ + ++YD+ HP Sbjct: 302 YTSLDFQH----LAKVYDKAHP 319 >gi|37527425|ref|NP_930769.1| site-specific tyrosine recombinase XerD [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786860|emb|CAE15925.1| Integrase/recombinase xerD [Photorhabdus luminescens subsp. laumondii TTO1] Length = 303 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 92/303 (30%), Positives = 151/303 (49%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + +E L++ TL SY D + +L + +++QTI ++ +F+++R Sbjct: 14 EQFLDAIWLEHDLAENTLASYRLDLQALDNWLIHHGHNLLSVQTI------DLHSFLAER 67 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ Y + K+ + + K LP+ L+EKQ Sbjct: 68 VDGGYKASSSARLLSAMRQLFLYFYREKMREDDPTALLSAPKLPKRLPKDLSEKQV---- 123 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL+ + ++ R+ A+L +LY CGLR+SE + LT ++ Q +R+ GKG+K R Sbjct: 124 -EDLLNAPCTDQPVELRDKAMLEVLYACGLRVSELVGLTLSDVSLRQGVVRVIGKGNKER 182 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL + Y + L L LF RG+ + F I+ G+ Sbjct: 183 LVPLGEEAIYWLENYLEYGRVGLLNGATLDVLFPSNRGRQMTRQTFWYRIKHYALLAGID 242 Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + ++ Q Sbjct: 243 TGRLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKLLHQQ 298 Query: 317 THP 319 HP Sbjct: 299 HHP 301 >gi|189465186|ref|ZP_03013971.1| hypothetical protein BACINT_01531 [Bacteroides intestinalis DSM 17393] gi|189437460|gb|EDV06445.1| hypothetical protein BACINT_01531 [Bacteroides intestinalis DSM 17393] Length = 316 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 94/291 (32%), Positives = 147/291 (50%), Gaps = 24/291 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT--EIRAFIS 76 + + Q L++E+ LS TL +Y D + L FL + I L+ T +++ F + Sbjct: 18 RKYQQYLKLEKALSANTLDAYLTDLNKLLCFLK--------TENIDMLAVTLDDLQRFAA 69 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 I RS R LSGIKSF +L + + K LP L ++ T Sbjct: 70 GLHDIGIHPRSQARILSGIKSFFHFLVMADYREDDPSELLEGPKIGFKLPEVLTVEEIDT 129 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 ++ V + +K RN AIL LY CGLR+SE +L + D+ ++++GKG K Sbjct: 130 IISTVDM-----SKKEGQRNRAILETLYSCGLRVSELCNLKLSELYFDEGFIKVEGKGSK 184 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLN-----IQLPLFRGIRGKPLNPGVFQRYIRQLR 251 R+VP+ P K I +Y+ L D NL + +F G ++ + I++L Sbjct: 185 QRLVPISPRAIKEI-KYWLL---DRNLGKIKKGFEDYVFLARWGNSISRIMVFHLIKELA 240 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 G+ + + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ Sbjct: 241 EKAGITKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHID 291 >gi|311745481|ref|ZP_07719266.1| tyrosine recombinase XerD [Algoriphagus sp. PR1] gi|126578034|gb|EAZ82254.1| tyrosine recombinase XerD [Algoriphagus sp. PR1] Length = 294 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 85/302 (28%), Positives = 155/302 (51%), Gaps = 15/302 (4%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKR 78 +++ LE E+ S T+ +Y D QFL F++ + EE I + ++EIRA++ Sbjct: 4 SFINYLEFEKKSSSHTVLAYRKDLEQFLEFVSVSFGEEDILF-----VGHSEIRAWVIDL 58 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 ++ ++ R ++ ++S+ K+L + ++ ++ +++LK LP L E LT + Sbjct: 59 VENQLSTTTVNRKIATLRSYYKFLLRSRVISKDPTYKLKSLKNPKKLPEFLQE---LT-I 114 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 +VL + +E + R+ +L LY G+R+SE L +I + +++ GK K R Sbjct: 115 SSVLEESVYEENFEGQRDKMVLEFLYLTGVRLSELTGLKWGDINLSEKVVKVLGKRKKER 174 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF-RGIRGKPLNPGVFQRYIRQLRRYLGLP 257 I+PL + + I+ Y + + Q F GKP P + R +R+ Sbjct: 175 IIPLTNGLARNIISYQKVFEERFSKVSQSDYFIVSNNGKPSYPMMIYRVVRKYLDIFAQT 234 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + H LRH+FATHLL+ G DL +++ +LGH L+ TQ+YT+ N + + +++Q Sbjct: 235 SKRSPHVLRHTFATHLLNKGADLNAVKDLLGHSNLAATQVYTH----NSLEKLKAVFEQA 290 Query: 318 HP 319 HP Sbjct: 291 HP 292 >gi|258514510|ref|YP_003190732.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] gi|257778215|gb|ACV62109.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] Length = 301 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 88/302 (29%), Positives = 155/302 (51%), Gaps = 11/302 (3%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 N++ L++++ S T++SY+ D + F + +K +S+ +R ++++ + Sbjct: 7 NFIIYLQLQKNASPKTVESYQKDLFDGIDFFSAALNKKDNELLPMDVSHNLMRRYLAQMQ 66 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + + ++ R L+ +SF KYL + ++++ + K + LP L +Q Sbjct: 67 QKGLARSTVARRLASWRSFYKYLCREDYLQQNHLAGVATPKGNGKLPLFLETEQL----- 121 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 +LL T + R++A+L +LY GLR+SEA++L + D L+ GKG K R+ Sbjct: 122 KLLLEAPDSTTSLGQRDAALLEILYAAGLRVSEAVNLDLSALDFDSRMLKAYGKGSKERM 181 Query: 200 VPLLPSVRKAILEYYDLCPFDLN--LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +P A+ Y L+ + +F G L+ ++ I + GL Sbjct: 182 IPFGTYAAAALKLYIKDGRHKLSKISQSEQAVFLNNSGTRLSDRGIRKIIDKYIEKTGLK 241 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + + HTLRH+FATHLL NG DLRS+Q +LGH RLSTTQIYT+V+ + + ++ + Sbjct: 242 SAISPHTLRHTFATHLLDNGADLRSVQELLGHVRLSTTQIYTHVSVEK----LKGVHKKY 297 Query: 318 HP 319 HP Sbjct: 298 HP 299 >gi|225619262|ref|YP_002720488.1| tyrosine recombinase XerD [Brachyspira hyodysenteriae WA1] gi|225214081|gb|ACN82815.1| tyrosine recombinase XerD [Brachyspira hyodysenteriae WA1] Length = 309 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 89/312 (28%), Positives = 166/312 (53%), Gaps = 25/312 (8%) Query: 12 FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71 + LL+E ++LQ L + T+ SY D +++ FL + I + + ++ + Sbjct: 15 YVLLEEFSDYLQTL----NFAAHTINSYNKDLKEYFQFLH---NKNIPLD---EANHYTV 64 Query: 72 RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131 R +++ + + + + ++ R LS IK F KYL + + ++ I++M++ K+ + + L Sbjct: 65 RDYLTFLKEKSLTNSTMSRHLSSIKKFYKYLIRNGYSDKNRIVDMKSPKREEHIAKFL-- 122 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 ++ +DN+L + R+ + +Y GLR+SE SL I TLRI Sbjct: 123 --SIDDIDNILA-IDDGGDFTLIRDKMMALFMYAIGLRVSELASLKLSMIKKGSETLRIC 179 Query: 192 GKGDKIRIVPLLPSVRK---AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 GKG K+R +P+LP + + +E + + + N +F GKP++ + ++ Sbjct: 180 GKGSKVRDIPILPIIYENWDVYMEKRRIIQREYSENNDY-IFINRFGKPISDRSIRTSMK 238 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV-NSKNGG 307 +L R + + + HTLRH+FATHLL+N ++R +Q +LGH ++TTQ YT+V NS+ Sbjct: 239 RLIRNANISIDFSPHTLRHTFATHLLNNDAEIRGVQELLGHETIATTQRYTHVTNSR--- 295 Query: 308 DWMMEIYDQTHP 319 + E+Y++ HP Sbjct: 296 --LFEVYNKFHP 305 >gi|27468099|ref|NP_764736.1| site-specific recombinase [Staphylococcus epidermidis ATCC 12228] gi|251810914|ref|ZP_04825387.1| integrase/recombinase XerD [Staphylococcus epidermidis BCM-HMP0060] gi|282876077|ref|ZP_06284944.1| tyrosine recombinase XerD [Staphylococcus epidermidis SK135] gi|34222791|sp|Q7ZAJ2|XERD_STAES RecName: Full=Tyrosine recombinase xerD gi|27315645|gb|AAO04780.1|AE016748_14 site-specific recombinase [Staphylococcus epidermidis ATCC 12228] gi|251805594|gb|EES58251.1| integrase/recombinase XerD [Staphylococcus epidermidis BCM-HMP0060] gi|281295102|gb|EFA87629.1| tyrosine recombinase XerD [Staphylococcus epidermidis SK135] gi|329737213|gb|EGG73467.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU028] Length = 295 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 98/304 (32%), Positives = 157/304 (51%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTI-RQLSYTEIRAFIS 76 + +L ++IE+GLS T+ +Y D +++ +L + KI+ I I RQ+ + I Sbjct: 6 EEYLNFIQIEKGLSNNTIGAYRRDLKKYKDYLE---DNKISHIDFIDRQIIQECLGHLID 62 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 ++ K SL R +S I+SF ++ + K + + + K LP L + + Sbjct: 63 MGQSSK----SLARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEIDEVI- 117 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 LL T TK R+ +L LLY G+R++E + L +++ +R+ GKG+K Sbjct: 118 ----ALLETPDLTKNNGYRDRTMLELLYATGMRVTEIIQLDVEDVNLIMGFVRVFGKGNK 173 Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RIVPL +V + + Y + P L LF + GK L+ + I+Q Sbjct: 174 ERIVPLGDTVIEYLTTYIETVRPQLLKQTTTQALFLNMHGKSLSRQGIWKIIKQYGLKAN 233 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + T HTLRHSFATHLL NG DLR++Q +LGH +STTQ+YT+V+ + ++Y Sbjct: 234 INKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYT 289 Query: 316 QTHP 319 Q HP Sbjct: 290 QFHP 293 >gi|154509161|ref|ZP_02044803.1| hypothetical protein ACTODO_01682 [Actinomyces odontolyticus ATCC 17982] gi|153798795|gb|EDN81215.1| hypothetical protein ACTODO_01682 [Actinomyces odontolyticus ATCC 17982] Length = 303 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 89/307 (28%), Positives = 148/307 (48%), Gaps = 18/307 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ-LSYTEIRAFISK 77 + W + L + R +S T+ +Y D + FL+ + T + +R+ L+ +R+++++ Sbjct: 7 ERWEEYLRLGRRMSPHTVSAYLGDLHSLMEFLSL--DADATPEQLREALTQRAVRSWLAR 64 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 ++ R + I++F + + I + + + LP L+E A Sbjct: 65 TLADGGARSTIARHTAAIRNFTSWAMREGILVSDPAALLSSPRADQLLPSPLDESDA--- 121 Query: 138 VDNVLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 VLL+T+ + RN AIL L Y CGLR+SE +L ++ D T+R+ GK Sbjct: 122 --RVLLNTARDEAAAGGASQIRNWAILELTYACGLRVSEVCALDISSLNRDALTVRVVGK 179 Query: 194 GDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 G+K R+VP P A+ + P LF G +G ++P + + + + Sbjct: 180 GNKERVVPYGPPAADALDHWLVRGRPQLAGERSGNALFLGDKGGRIDPRIVRSMVHKTAA 239 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 G+ H LRHS ATHLL G DLR++Q +LGH LSTTQ YT+V++ + Sbjct: 240 RAGV-HDIAPHGLRHSTATHLLQGGADLRAVQEMLGHSSLSTTQRYTHVDTAR----LSA 294 Query: 313 IYDQTHP 319 IY + HP Sbjct: 295 IYQRAHP 301 >gi|300783889|ref|YP_003764180.1| integrase/recombinase XerC [Amycolatopsis mediterranei U32] gi|299793403|gb|ADJ43778.1| integrase/recombinase XerC [Amycolatopsis mediterranei U32] Length = 326 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 83/302 (27%), Positives = 142/302 (47%), Gaps = 16/302 (5%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 ++L +ERGLS T+++Y D L F+ E + +L +RA+++ +++ Sbjct: 34 RHLGLERGLSAHTVRAYVGDAVSLLGFVVDGGSE------VAELDLARLRAWLAAQQSGG 87 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 +L R + ++F + + + + + +LP L QA ++ Sbjct: 88 ASRTTLARRAASARTFTAWAHRTGVLATDPGGRLAAPRAHRTLPGVLRAGQAGEVMQASA 147 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202 + + R+ AI+ LLY G+R+SE L + + + GKG K R+VP Sbjct: 148 AGAAQRDP-VALRDRAIVELLYATGIRVSELCGLDVGEADFSRRVVTVLGKGGKERVVPF 206 Query: 203 LPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +A+ ++ D + + + LF G+RGK ++P +R + + Sbjct: 207 GVPAAEALADWIDEGRPKIITESGGESAEAALFLGVRGKRVDPRAVRRVVHDAVTAVPGA 266 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 L H LRHS ATHLL G DLRS+Q +LGH L+TTQ+YT+V D + I+D+ Sbjct: 267 LDMGPHGLRHSAATHLLEGGADLRSVQELLGHATLATTQLYTHVTV----DRLKAIHDRA 322 Query: 318 HP 319 HP Sbjct: 323 HP 324 >gi|169350427|ref|ZP_02867365.1| hypothetical protein CLOSPI_01195 [Clostridium spiroforme DSM 1552] gi|169292747|gb|EDS74880.1| hypothetical protein CLOSPI_01195 [Clostridium spiroforme DSM 1552] Length = 298 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 93/304 (30%), Positives = 154/304 (50%), Gaps = 22/304 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L+ ER S T+ SY R+ + F + +E I+ + Y +R +++K Sbjct: 10 YLDCLKYERNYSNNTIASYR---REIMHFKVYLVQEGIS--DYNDVDYLMLRGYLTKLYD 64 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + S+ LS ++SF YL K + ++ + + K P L +++ + L+D+ Sbjct: 65 KNLAKSSINHRLSALRSFFDYLLKEEFIKDNPFKLIESQKVGQRNPDFLFQEEMIDLLDS 124 Query: 141 VLLHTSHETKW-IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + ETK + RN A+L L+Y GLR SE +L +I +Q + + GKG K R Sbjct: 125 I------ETKDDLGIRNKAMLELMYASGLRCSEVANLQISDIDFNQMVVLVHGKGGKDRY 178 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLG 255 VP R +++Y D NL I+ +F G PL + + ++ Sbjct: 179 VPFHEYARDWLVKYIDEARN--NLMIKNAGHNFIFVNKLGNPLTNRGIENIVDRVTFKYD 236 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 HT+RHSFATHLL+ G D+R++Q +LGH L+TTQ+YT++ SKN + ++Y Sbjct: 237 ATKKIHPHTIRHSFATHLLNAGADIRTVQELLGHKNLATTQVYTHI-SKN---HLKKVYM 292 Query: 316 QTHP 319 +THP Sbjct: 293 KTHP 296 >gi|169830712|ref|YP_001716694.1| phage integrase family protein [Candidatus Desulforudis audaxviator MP104C] gi|169637556|gb|ACA59062.1| phage integrase family protein [Candidatus Desulforudis audaxviator MP104C] Length = 300 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 95/309 (30%), Positives = 152/309 (49%), Gaps = 26/309 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ L E+ S TL +Y D R FL E+I + + R FI + Sbjct: 9 REFLRYLRAEKDASPETLAAYRSDLRPLEDFL---FRERIAPELANLTTPVLRRYFIWLQ 65 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 +K+ SL+R + +SF +YL +++ + +R K+ + +P L E++ + Sbjct: 66 EERKLKAASLRRKIHCFRSFFRYLAEQEYIPGDPMRKIRPPKEPDRVPIYLKEEE----L 121 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 +L H R+ IL+LL CGLR SE L L ++ TLR++GKG + R Sbjct: 122 KWLLTAPGHLGGPYHLRDKLILHLLAYCGLRRSELLRLDWDDVDLGAGTLRVRGKGKRER 181 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRY 253 ++PL+P +++ + EY L +LP LF G G +N R ++ R Sbjct: 182 LIPLIPELQQILWEY---------LQTRLPLENRALFLGREGGRMNKDALTRLFKRYVRM 232 Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 GL P T H LRHSFAT LL G D+ +IQ ++GH L++T+IY + +SK + E Sbjct: 233 AGLDPAVITPHKLRHSFATLLLEKGTDVFTIQELMGHADLASTRIYAHCSSKR----LRE 288 Query: 313 IYDQTHPSI 321 ++ P I Sbjct: 289 AVERIRPGI 297 >gi|89890184|ref|ZP_01201695.1| site-specific integrase/recombinase XerD protein [Flavobacteria bacterium BBFL7] gi|89518457|gb|EAS21113.1| site-specific integrase/recombinase XerD protein [Flavobacteria bacterium BBFL7] Length = 295 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 87/302 (28%), Positives = 164/302 (54%), Gaps = 16/302 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L L E+ S+ T+ +YE D QF +FL E + IQ SY IR +++ Sbjct: 4 KSYLDYLSFEKKYSQNTITAYEKDLEQFGLFLM--DEYDLEIQNA---SYPIIRTWLALL 58 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q++ R++ R ++ +KS+ K+L + + N ++LK S ++ ++++ Sbjct: 59 LDQQLSSRTVNRKVAALKSYFKFLLLIEQIDYHPLSNHKSLKVSKNIQIPFSKQEV---- 114 Query: 139 DNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 +L+ S++++ ++ R+ I+ L Y G+R E ++L +N+ T+++ GK +K Sbjct: 115 -QQILNASYDSEDFESVRDLLIIELFYVTGVRREELINLRIENVNLLSRTIKVVGKRNKE 173 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 R++P+L SV+ + E Y L + + + LF +G L PG+ R I+ + Sbjct: 174 RLIPMLESVKFKV-EAYLLLKESIETDKRPELFVTRKGDKLYPGLVYRIIKSYFSKVSQK 232 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + T+ H LRHSFATHLL G DL +++ +LGH L++TQ+YT+ + + + E++ Sbjct: 233 VKTSPHILRHSFATHLLDEGADLNAVKELLGHASLASTQVYTH----SSMEMLKEMHRNA 288 Query: 318 HP 319 HP Sbjct: 289 HP 290 >gi|260892475|ref|YP_003238572.1| integrase family protein [Ammonifex degensii KC4] gi|260864616|gb|ACX51722.1| integrase family protein [Ammonifex degensii KC4] Length = 304 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 96/304 (31%), Positives = 151/304 (49%), Gaps = 20/304 (6%) Query: 24 NLEIERGLSKLTLQSYECDTRQFLIFLA---FYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ E+G S TL Y+ D + L F A E +++ Q+I + + R F+ Sbjct: 11 HLQTEKGASLRTLTEYQKDLLEGLSFFARLLGVAEAELSPQSI---TPSLFRRFLGYLHE 67 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + ++ R L+ +SF ++L + I + + K+ LPR L +A LV Sbjct: 68 RSLSRNTIARKLAAWRSFFRFLCREGILNADPLKLVSAPKREKRLPRVLYPHEAEALVTA 127 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + W R+ A+L +LYG GLR+SE L ++ ++ LR+ GKG K RI Sbjct: 128 P--KGTDPKAW---RDRALLEVLYGAGLRVSEVEHLNLSDVDLERGELRVWGKGGKERIA 182 Query: 201 PLLPSVRKAILEYYDLC-PFDLNLNI----QLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 L P A+ +Y + P L+ + LF RG+ L+ + + G Sbjct: 183 LLHPLAVAALKDYLERGRPLLLSRRSRGEEEPALFLNHRGERLSARGIRLIVTSYAAKTG 242 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + T HT RHSFATHLL G DLR++Q +LGH RL+TTQIYT ++ + + IY+ Sbjct: 243 VKGKVTPHTFRHSFATHLLDGGADLRTVQELLGHKRLATTQIYTRLSLER----IKHIYE 298 Query: 316 QTHP 319 +THP Sbjct: 299 KTHP 302 >gi|270264904|ref|ZP_06193168.1| DNA integration/recombination/invertion protein [Serratia odorifera 4Rx13] gi|270041202|gb|EFA14302.1| DNA integration/recombination/invertion protein [Serratia odorifera 4Rx13] Length = 299 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 92/303 (30%), Positives = 152/303 (50%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ER L++ TL SY D + +L + Q + +++AF+++R Sbjct: 10 EQFLDALWLERNLAENTLASYRLDLQALSAWLNHQNTSLLQAQAL------DLQAFLAER 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K+ + + + K LP+ L+E Q Sbjct: 64 VAGGYKATSSARLLSAMRRLFQYLYREKLREDDPTALLASPKLPQRLPKDLSEAQV---- 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + LL + ++ R+ A+L +LY GLR+SE + LT ++ Q +R+ GKG+K R Sbjct: 120 -DALLQAPCVDQPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKER 178 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL I Y + P+ +N LF R + + F I+ G+ Sbjct: 179 LVPLGEEAVYWIENYLEHGRPWMVNGQALDVLFPSNRCQQMTRQTFWHRIKHYAILAGID 238 Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Q Sbjct: 239 SERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQQ 294 Query: 317 THP 319 HP Sbjct: 295 HHP 297 >gi|257892241|ref|ZP_05671894.1| phage integrase [Enterococcus faecium 1,231,408] gi|257828620|gb|EEV55227.1| phage integrase [Enterococcus faecium 1,231,408] Length = 223 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 80/229 (34%), Positives = 125/229 (54%), Gaps = 10/229 (4%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 +S ++ F ++L++ +IT + ++ KK+ LP L LT V+ L+ TK Sbjct: 2 ISSLRRFHQFLRQERITDHDPMQHIDTPKKAQKLPSTLT----LTEVEK-LIEAPDTTKT 56 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211 + R+ AIL ++Y G+R+SE + L ++ ++ GKGDK RI+PL + + Sbjct: 57 LGIRDRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGKGDKERIIPLGDYAIQWLE 116 Query: 212 EYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 Y D P + ++ +F GK L+ + ++QL R G+ T HTLRHSFA Sbjct: 117 RYLDEARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVREAGIYKEVTPHTLRHSFA 176 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 THLL NG DLR++Q +LGH +STTQIYT++ K M ++Y Q P Sbjct: 177 THLLENGADLRTVQELLGHADISTTQIYTHITKKR----MTDVYKQHFP 221 >gi|218708546|ref|YP_002416167.1| site-specific tyrosine recombinase XerD [Vibrio splendidus LGP32] gi|218321565|emb|CAV17517.1| Tyrosine recombinase xerD [Vibrio splendidus LGP32] Length = 320 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 100/305 (32%), Positives = 156/305 (51%), Gaps = 21/305 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF--YTEEKITIQTIRQLSYTEIRAFIS 76 + +L + +ERGLS+ TL SY D + L ++ Y + I++ ++ Y A Sbjct: 31 EQFLDAMWMERGLSENTLVSYRTDLSKLLTWMEKNNYRLDFISLSGLQ--DYQGWLADAD 88 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 ++T + R LS I+ +YL + K+ + + + K LP+ L+E+Q Sbjct: 89 FKQTSR------ARMLSAIRRLFQYLHREKVRADDPSALLISPKLPKRLPKDLSEEQ--- 139 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 VD+ LL I+ R+ A+L LLY GLR++E +SLT +NI Q +R+ GKG K Sbjct: 140 -VDS-LLEAPDPNDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGGK 197 Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 R+VP+ + I + + P L N +F R K + F I+ G Sbjct: 198 ERLVPMGENAVDWIETFIEQGRPQLLGDNSSDVVFPSKRAKQMTRQTFWYRIKHYSVIAG 257 Query: 256 LPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 + + H LRH+FATHLL+ G DLR +Q +LGH LSTTQIYT+V ++ + +I+ Sbjct: 258 IDTELLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIH 313 Query: 315 DQTHP 319 Q HP Sbjct: 314 AQHHP 318 >gi|171915713|ref|ZP_02931183.1| hypothetical protein VspiD_31120 [Verrucomicrobium spinosum DSM 4136] Length = 297 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 94/301 (31%), Positives = 146/301 (48%), Gaps = 15/301 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +L ERGLS +Y+ R+ L A + + I ++ I F+ R+ Sbjct: 8 FLLHLATERGLSV----NYQLLVRRVLETFASWLHREHDSDDIADVTTQHISGFLGHRKG 63 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + SL+ L +K F ++L R + + SLP LNE + L+++ Sbjct: 64 DGLIPSSLRVELVALKIFFRWLAARGRRLGDPAEPVLPPRVEQSLPDTLNEPEVRRLLES 123 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 V T E +D R+ AIL + Y GLRISE +N+ ++ +R+ GKG+K R+V Sbjct: 124 V---TGQEP--LDLRDRAILEIFYASGLRISEVTGARVENLSLEEGWVRVTGKGNKTRLV 178 Query: 201 PLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ + R AI Y D P + + +F G L + +++ G+ Sbjct: 179 PVGGAARDAISRYLDSARPQLVKPKTKSFIFLNRNGGQLTTARVWQIVKERAAAAGMDAD 238 Query: 260 TT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 H LRHSFATHLL NG DLR IQ +LGH ++TTQIYT+V+ K + + + + H Sbjct: 239 RIYPHLLRHSFATHLLGNGADLRVIQEMLGHADIATTQIYTHVDQKR----LKDTHRKFH 294 Query: 319 P 319 P Sbjct: 295 P 295 >gi|153805793|ref|ZP_01958461.1| hypothetical protein BACCAC_00029 [Bacteroides caccae ATCC 43185] gi|149130470|gb|EDM21676.1| hypothetical protein BACCAC_00029 [Bacteroides caccae ATCC 43185] Length = 316 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 90/286 (31%), Positives = 152/286 (53%), Gaps = 13/286 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + Q L++E+ LS TL++Y D + + FL T E I + ++ ++++ F + Sbjct: 18 RKYQQYLKLEKSLSPNTLEAYLTDLDKLMSFL---TLEGINVL---EVCLSDLQRFTAGL 71 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 I RS R LSGIKSF ++L + K LP L ++ ++ Sbjct: 72 HDIGIHPRSQARILSGIKSFFRFLLMADYLEADPSELLEGPKIGFKLPEVLTVEEIDRII 131 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 V +K RN AIL LY CGLR+SE ++L ++ D+ ++++GKG K R Sbjct: 132 SAV-----DRSKAEGQRNRAILETLYSCGLRVSELVNLKLSDLYFDEGFIKVEGKGSKQR 186 Query: 199 IVPLLP-SVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGL 256 +VP+ P ++ + L + D ++ + +F R GK L+ + I++L + G+ Sbjct: 187 LVPISPRAINEIKLYFTDRNRIEVKKEYEDFVFVSQRRGKGLSRIMIFHMIKELAQTAGI 246 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ Sbjct: 247 IKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHID 292 >gi|85702955|ref|ZP_01034059.1| tyrosine recombinase XerD [Roseovarius sp. 217] gi|85671883|gb|EAQ26740.1| tyrosine recombinase XerD [Roseovarius sp. 217] Length = 323 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 87/296 (29%), Positives = 150/296 (50%), Gaps = 30/296 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ E G +K TL +Y D R F ++ + + +++ + Q +I +++ + Sbjct: 11 FLEAQAAELGAAKNTLMAYARDLRDFTDWVKY---QNLSLDNLMQ---PDIESYLVQCDA 64 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q + + R LS I+ ++ + ++ ++ + ++ K+ LP+ L E + L++ Sbjct: 65 QGLAPATRARRLSAIRQLYRFAFEERLRADNPAIRIKGPGKAQRLPKTLTEDEVGRLLEV 124 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 H T+ RN+ ++ LLY G+R+SE +SL D L ++GKG K R+V Sbjct: 125 APQHGRTATE--RCRNACLMALLYATGMRVSELVSLPLAAARGDPQMLLVRGKGGKERMV 182 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR-----YIRQLRRYLG 255 PL P R A++++ L L R +G +P +F Y+ + R Y Sbjct: 183 PLSPPARTALVDW-------LALRDAEETARRSKGLAPSPFLFASGGTAGYLTRHRFYNL 235 Query: 256 L----------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + P T HTLRH+FATHLL+NG DLR IQ++LGH ++TT+IYT+V Sbjct: 236 IKEFAVKAHVDPEKVTPHTLRHAFATHLLANGADLRVIQTLLGHADIATTEIYTHV 291 >gi|218885871|ref|YP_002435192.1| integrase family protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756825|gb|ACL07724.1| integrase family protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 371 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 102/338 (30%), Positives = 157/338 (46%), Gaps = 46/338 (13%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFL-------------------AFYTEEKITIQ 61 +L +L +E+G + T+ +Y D QF FL + +++ Sbjct: 2 FLVHLGMEKGYADATVTAYGTDMDQFAAFLEDEGDGPAIPGRPSLLNLNPAPSPAPLSLD 61 Query: 62 TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121 T ++ ++ F+++ Q+I S+ R LS +++F ++L + + T + N K+ Sbjct: 62 TPEHITKRHVQRFLAELHRQRIAKSSVARKLSALRAFFRFLLRLRRVTADPTAGVHNPKQ 121 Query: 122 SNSLPRALNEKQALTLVDN-----VLLHTSHETKWIDARN------------SAILYLLY 164 P ALN QA L+D L + A+ LLY Sbjct: 122 DQRHPHALNVDQAFALLDERRQRKALATAHATAHAGHGTDFGPTDAALLARDLALAELLY 181 Query: 165 GCGLRISEALSLTPQNIMDDQST---LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221 G GLR+SEAL L N++D +R+ GKG + R+ PL + R A+ + + Sbjct: 182 GSGLRVSEALEL---NVLDADPASGVVRVMGKGGRERMSPLSDTARDALSAWLAVRHQVD 238 Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281 + LF G RG LN R I L GLP + + H LRHSFATHLL G DLR Sbjct: 239 EGRGEPALFLGARGGRLNRRQAARIIETLCLRAGLPQAISPHGLRHSFATHLLEAGADLR 298 Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 S+Q +LGH RLSTTQ YT++ ++++YD+ HP Sbjct: 299 SVQELLGHARLSTTQRYTHLTLSR----LVDVYDRAHP 332 >gi|323143371|ref|ZP_08078059.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei YIT 12066] gi|322416889|gb|EFY07535.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei YIT 12066] Length = 297 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 90/302 (29%), Positives = 154/302 (50%), Gaps = 20/302 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++ L +ERGL ++ +Y D QF +L + + ++ + S +I F++ + Sbjct: 10 DFTDYLLLERGLLPKSITAYLSDLHQFFCYL-----DSVGVEPAK-FSSKDIEGFLASAK 63 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 ++ RS R L +++F +LK + + + N K SLP+ ++E ++ Sbjct: 64 -DRLSARSTARFLCSMRAFSAFLKLENYRDDDPLSLIDNPKLPQSLPKIMSEATVDEFIN 122 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + T + R+ A+ +Y CGLR+SE ++LT ++ L I+GKGDK R+ Sbjct: 123 AITTDTD-----VGLRDRAMFETVYSCGLRVSELVNLTFDSLNLVDGYLIIRGKGDKERL 177 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY---LGL 256 VPL + I Y + Q P + + GK + P + + +++ Y +GL Sbjct: 178 VPLGDNAVWWIKRYLAEGRISKDPKNQCP-YVFLSGKGVGPLSREGFWYRVKYYASKIGL 236 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + + HT RH+FATHLL++ DLRS+Q +LGH L+TTQIYT+V + M EIY + Sbjct: 237 SKAPSPHTFRHAFATHLLNHDADLRSVQLLLGHSSLTTTQIYTHVATAR----MHEIYKK 292 Query: 317 TH 318 H Sbjct: 293 AH 294 >gi|86147402|ref|ZP_01065715.1| tyrosine recombinase [Vibrio sp. MED222] gi|85834830|gb|EAQ52975.1| tyrosine recombinase [Vibrio sp. MED222] Length = 304 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 100/305 (32%), Positives = 156/305 (51%), Gaps = 21/305 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF--YTEEKITIQTIRQLSYTEIRAFIS 76 + +L + +ERGLS+ TL SY D + L ++ Y + I++ ++ Y A Sbjct: 15 EQFLDAMWMERGLSENTLVSYRTDLSKLLTWMEKNNYRLDFISLSGLQ--DYQGWLADAD 72 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 ++T + R LS I+ +YL + K+ + + + K LP+ L+E+Q Sbjct: 73 FKQTSR------ARMLSAIRRLFQYLHREKVRADDPSALLISPKLPKRLPKDLSEEQ--- 123 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 VD+ LL I+ R+ A+L LLY GLR++E +SLT +NI Q +R+ GKG K Sbjct: 124 -VDS-LLEAPDPNDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGGK 181 Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 R+VP+ + I + + P L N +F R K + F I+ G Sbjct: 182 ERLVPMGENAVDWIETFIEQGRPQLLGDNSSDVVFPSKRAKQMTRQTFWYRIKHYSVIAG 241 Query: 256 LPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 + + H LRH+FATHLL+ G DLR +Q +LGH LSTTQIYT+V ++ + +I+ Sbjct: 242 IDTDLLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIH 297 Query: 315 DQTHP 319 Q HP Sbjct: 298 AQHHP 302 >gi|325577298|ref|ZP_08147782.1| tyrosine recombinase XerD [Haemophilus parainfluenzae ATCC 33392] gi|325160880|gb|EGC73001.1| tyrosine recombinase XerD [Haemophilus parainfluenzae ATCC 33392] Length = 297 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 91/295 (30%), Positives = 153/295 (51%), Gaps = 17/295 (5%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 IE+GLS+ T+QSY D +L ++ ++++T+ L +++ F+ R Q Sbjct: 16 IEKGLSENTVQSYRLDLTALCDWL---DKQNLSLETLDPL---DLQQFLGSRLEQGYKAT 69 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R LS ++ +YL + K T+ + + K + LP+ L E+Q L L+T Sbjct: 70 STARMLSAMRKLFQYLYREKYRTDDPSAVLNSPKLPSRLPKYLTEQQVTDL-----LNTP 124 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 ++ R+ A+L LLY GLR++E ++LT +N+ Q +R+ GKG+K RIVP+ Sbjct: 125 DVEIPLELRDKAMLELLYATGLRVTELVTLTIENMNLQQGVVRVIGKGNKERIVPMGEEA 184 Query: 207 RKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHT 264 + ++ P LN +F R + + F I+ + + H Sbjct: 185 AFWVRQFVLYGRPILLNGQSSDVVFPSQRAQQMTRQTFWHRIKHYAVLAEIDTDALSPHV 244 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LRH+FATHL+++G DLR +Q +LGH LSTTQIYT+V + + ++++ HP Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER----LKHLHERFHP 295 >gi|257784507|ref|YP_003179724.1| integrase family protein [Atopobium parvulum DSM 20469] gi|257473014|gb|ACV51133.1| integrase family protein [Atopobium parvulum DSM 20469] Length = 305 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 87/306 (28%), Positives = 148/306 (48%), Gaps = 20/306 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +++ L R LS+ TL+SY+ D L F + + E + + Q+ + +R +++ Sbjct: 12 EQFIEYLHKVRNLSENTLRSYQTD---LLSFAQWCSRENVDLT---QVDHKNLRLYLAYL 65 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + ++L R LS ++ F K++++ K+ L + N + +LP + + Sbjct: 66 KQAQYSAKTLNRHLSALRGFYKWMQREKLIATDPALALSNPRAPRNLPHTMTDSDV---- 121 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 N LL + + R+ A L LY G RISE +L + + T+R+ GKG K R Sbjct: 122 -NRLLESCDVSTAAGLRDRAFLEFLYATGARISEVATLRLEQVDLQNGTVRLFGKGSKER 180 Query: 199 IVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 IVPL S + + +Y L D + LF +RG ++ ++ Sbjct: 181 IVPLYESAIEWLKKYLRSSRPTLLLKDKTGRVHSALFISVRGNNMSADSLRKVFSSYLTA 240 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 GL S + H +RH++AT LL G DLR +Q +LGH LSTTQ+YT+++ D + E Sbjct: 241 AGLDSSLSPHAMRHTYATELLGGGADLRIVQELLGHESLSTTQVYTHLSV----DRLKEA 296 Query: 314 YDQTHP 319 HP Sbjct: 297 AKAAHP 302 >gi|160884146|ref|ZP_02065149.1| hypothetical protein BACOVA_02123 [Bacteroides ovatus ATCC 8483] gi|156110488|gb|EDO12233.1| hypothetical protein BACOVA_02123 [Bacteroides ovatus ATCC 8483] Length = 319 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 95/293 (32%), Positives = 151/293 (51%), Gaps = 27/293 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + Q L++E+ LS TL +Y D + + FL +EK+ I + ++++ F + Sbjct: 18 RKYQQYLKLEKSLSPNTLDAYLTDLYKLINFL---EQEKVGILDV---CLSDLQHFAAGL 71 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 I RS R LSGIKSF ++L + K LP L ++ ++ Sbjct: 72 HDIGIHPRSQARILSGIKSFFRFLIIEDYLEADPSELLEGPKIGFKLPEVLTVEEIDRII 131 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 V +K RN AIL LY CGLR+SE ++L ++ D+ ++++GKG K R Sbjct: 132 SAV-----DRSKAEGQRNRAILETLYSCGLRVSELVTLKLSDLYFDEGFIKVEGKGSKQR 186 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI---------RGKPLNPGVFQRYIRQ 249 +VP+ P +AI E P D N Q+ + +G RGK L+ + I++ Sbjct: 187 LVPISP---RAINEIKLYIP-DRN---QIEVKKGHEDFVFVSQRRGKGLSRIMIFHMIKE 239 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 L G+ + + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ Sbjct: 240 LAEKAGITKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHID 292 >gi|256832498|ref|YP_003161225.1| tyrosine recombinase XerD [Jonesia denitrificans DSM 20603] gi|256686029|gb|ACV08922.1| tyrosine recombinase XerD [Jonesia denitrificans DSM 20603] Length = 310 Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 92/308 (29%), Positives = 151/308 (49%), Gaps = 19/308 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE-IRAFISK 77 Q +LQ+L +ERG+S TL +Y D ++L +L + ++++ ++ Q + + + A Sbjct: 11 QGYLQHLLVERGVSPNTLAAYRRDLARYLDYL---SHRELSLHSVTQSTIDDFLVALREG 67 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 Q + S+ R L+ ++ +Y + + +++R K LP L+ Sbjct: 68 SLGQSLSQSSVSRHLASLRGLHRYAEAEGVVAGDPAVSVRPPKLPQRLPDVLSTHDV--- 124 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGD 195 LL T + R+ A+L LY G RISE + L +++ D R+ GKG Sbjct: 125 --ERLLTTPPLDSAVGLRDRALLEFLYATGARISEVVGLDRDDVIADDGFVVARVLGKGH 182 Query: 196 KIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRY 253 K R+VP+ A+ Y P + P LF RG+ L+ +R R Sbjct: 183 KERLVPVGSCAYDALNAYLVRARPELAGAGVGTPALFLNTRGRRLSRQSAFGVVRSAARL 242 Query: 254 LGLP--LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 +P S + HTLRH FATH+LS G D+R +Q +LGH ++TTQIYT+V++ D + Sbjct: 243 AAIPGAESVSPHTLRHCFATHMLSGGADIRVVQELLGHASVTTTQIYTHVSA----DALR 298 Query: 312 EIYDQTHP 319 E+Y +HP Sbjct: 299 EVYASSHP 306 >gi|238754564|ref|ZP_04615918.1| Tyrosine recombinase xerD [Yersinia ruckeri ATCC 29473] gi|238707195|gb|EEP99558.1| Tyrosine recombinase xerD [Yersinia ruckeri ATCC 29473] Length = 299 Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 91/303 (30%), Positives = 156/303 (51%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ER L++ TL SY D + +L + + + + ++++F+++R Sbjct: 10 EQFLDALWLERNLAENTLASYRLDLQALAGWLQRHNKSLLLADPL------DLQSFLAER 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ F +YL + K+ + + + K LP+ L+E Q Sbjct: 64 IEGGYKATSSARLLSAMRRFFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQV---- 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + LL++ + ++ R+ A+L +LY GLR+SE + LT ++ Q +R+ GKG+K R Sbjct: 120 -DALLNSPNVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKER 178 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL I Y + P+ +N LF R + + F I+ G+ Sbjct: 179 LVPLGEEAVYWIENYMEYGRPWLINGQALDVLFPSNRSQQMTRQTFWHRIKHYAILAGID 238 Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Q Sbjct: 239 SERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQQ 294 Query: 317 THP 319 HP Sbjct: 295 HHP 297 >gi|118473200|ref|YP_886852.1| site-specific tyrosine recombinase XerC [Mycobacterium smegmatis str. MC2 155] gi|166918888|sp|A0QVB4|XERC_MYCS2 RecName: Full=Tyrosine recombinase xerC gi|118174487|gb|ABK75383.1| tyrosine recombinase XerC [Mycobacterium smegmatis str. MC2 155] Length = 300 Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 88/296 (29%), Positives = 144/296 (48%), Gaps = 10/296 (3%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +ERG S T ++Y D L L + E++ +++ ++S +R++++++ Sbjct: 12 LGLERGHSDHTRRAYRGD----LTALFDFVEQRTGERSLARVSLPLLRSWLAEQSASGAA 67 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 +L R S +K+F + +R + ++ K +LP L QAL +D V Sbjct: 68 RTTLARRTSSVKTFCAWALRRGLIGVDPAARLQVPKARRTLPAVLRRDQALDALDAVN-S 126 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + E I R+ I+ LLY G+R+SE L +I + +R+ GKG+K R VP Sbjct: 127 GAQEGDPIALRDRLIVELLYATGIRVSELCGLDIDDIDTSRRVVRVLGKGNKQRTVPFGE 186 Query: 205 SVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 A+ + L++ P L G RG+ L+P + + Q + H Sbjct: 187 PAHAALTAWLTEGRPQLSIPESGPALLLGARGRRLDPRQARTVVHQTVSAVNGAPDIGPH 246 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LRHS ATHLL G DLR +Q +LGH L+TTQ+YT+V + + ++DQ HP Sbjct: 247 GLRHSAATHLLEGGADLRIVQELLGHTSLATTQLYTHVTVER----LRAVHDQAHP 298 >gi|212633304|ref|YP_002309829.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella piezotolerans WP3] gi|212554788|gb|ACJ27242.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella piezotolerans WP3] Length = 304 Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 91/323 (28%), Positives = 158/323 (48%), Gaps = 45/323 (13%) Query: 21 WLQNLE----IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 WL + E ER +S T+++Y + ++ A + +L + ++A I+ Sbjct: 12 WLIDFERYLTTERQVSAYTVRNYLFELKRVEAVFAANDD-------WLELKHESLQAIIA 64 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 K + + RSL +LS IK F +L + + + + LN+ K++ LP+ ++ Sbjct: 65 KLHRKGLSPRSLSLTLSSIKQFFDFLLREQQISVNPALNLSAPKQAKPLPKNMDVDSVTH 124 Query: 137 LVDNVLLHTSHETKWIDA------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 L++ IDA R+ AI+ L Y GLR++E +L +I Q+ +++ Sbjct: 125 LLE------------IDANDPLSYRDKAIMELFYSSGLRLAELAALNVTDIKFSQAQVKV 172 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245 GKG K RIVP+ AI ++ D+ C D LF +G+ L Q Sbjct: 173 MGKGSKERIVPIGKLALTAISQWLDIKRDIPCEDD-------ALFVTAKGRRLAHRSIQA 225 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + + + L + H LRHSFATH+L + DLR++Q +LGH LSTTQ+YT+++ ++ Sbjct: 226 RLAKWGQEQALSVKVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQVYTSLDFQH 285 Query: 306 GGDWMMEIYDQTHPSITQKDKKN 328 + ++YD HP ++ K+ Sbjct: 286 ----LAKVYDSAHPRAKKRGNKS 304 >gi|84496359|ref|ZP_00995213.1| tyrosine recombinase [Janibacter sp. HTCC2649] gi|84383127|gb|EAP99008.1| tyrosine recombinase [Janibacter sp. HTCC2649] Length = 299 Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 90/303 (29%), Positives = 143/303 (47%), Gaps = 10/303 (3%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++WL +L++ERGLS TL++Y D ++ +L+ + T R +S R Sbjct: 2 RSWLTHLDVERGLSANTLKAYRRDLGRWTAYLSVVGIDDPAKVTERHVSEFLARLREGDE 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S R+L ++ K+L + + LP+A++ + L+ Sbjct: 62 DHPALAANSAARTLVSVRGLHKFLALEGEVDADPAAAVSPPPPPSRLPKAISVSEVERLL 121 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + + + + R+ A+L LLYG G RISEA+ L ++ D +R++GKG K R Sbjct: 122 NAAAVGDTPAS----LRDKALLELLYGTGARISEAVGLDIDDVDMDAGIVRLEGKGGKQR 177 Query: 199 IVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VPL R A+ Y F +F RG L+ +R L Sbjct: 178 LVPLGSYARTALTAYLVRGRGTFSTKGKGTPAIFLNQRGSRLSRQSAWSILRAAAARADL 237 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + HTLRHSFATHLL G D+R +Q +LGH ++TTQ+YT V + + E+Y Q Sbjct: 238 SGHLSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTVQQ----LREVYAQ 293 Query: 317 THP 319 +HP Sbjct: 294 SHP 296 >gi|312130418|ref|YP_003997758.1| tyrosine recombinase xerd [Leadbetterella byssophila DSM 17132] gi|311906964|gb|ADQ17405.1| tyrosine recombinase XerD [Leadbetterella byssophila DSM 17132] Length = 296 Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 92/313 (29%), Positives = 156/313 (49%), Gaps = 29/313 (9%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 E ++ +N+L+ +ERGL+ +++SY D L LA + + K+ T+ + + Sbjct: 5 EAIRAFKNYLK---LERGLAPNSVESYLRD----LGALASFLDGKVAPNTVEE---DHLY 54 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 AFI + + R LSGIK+F ++L+ KI + K LP L K Sbjct: 55 AFIETISEMGLSSSTQARMLSGIKAFFEFLRLEKIRDTDPTALLVGPKLIRKLPEVLQVK 114 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + L++ + L T T RN A+L +LY GLR+SE ++L ++ L+++G Sbjct: 115 EVEALLEGIDLSTPEGT-----RNRAMLEVLYSSGLRVSEVVNLQISRCFFEEGYLQVRG 169 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLC------PFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 KG K R+VP + K + Y ++ D+ + LF RG L+ + Sbjct: 170 KGSKTRLVP----IGKQAIHYTEIYKTLVRPSLDIKKGYEDHLFLNRRGAALSRVMVFYV 225 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 ++ G+ + + HTLRHSFATHL+ G DLR++Q +LGH + TT+IYT+++ Sbjct: 226 VKNAAEAAGIQKTISPHTLRHSFATHLVEGGADLRAVQEMLGHESILTTEIYTHLDRA-- 283 Query: 307 GDWMMEIYDQTHP 319 ++ + + HP Sbjct: 284 --FLQQTLREFHP 294 >gi|256424447|ref|YP_003125100.1| tyrosine recombinase XerD [Chitinophaga pinensis DSM 2588] gi|256039355|gb|ACU62899.1| tyrosine recombinase XerD [Chitinophaga pinensis DSM 2588] Length = 316 Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 88/304 (28%), Positives = 151/304 (49%), Gaps = 29/304 (9%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKRRTQKI 83 L++ER LS ++++Y D + + +L + + IQ Q+S +++++ + T + Sbjct: 31 LQLERSLSANSIEAYLRDVEKLVQYL-----QSVNIQPPPDQVSLSDLQSCVRWIATLGM 85 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 S R +SGIK+F +YL + + + + K LP L+ ++ ++ + Sbjct: 86 TATSQARIISGIKAFYRYLALEDVVRQDPTILLEAPKTKRQLPDVLSFEEIEQIIGQIKA 145 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 T RN AIL +Y CGLR+SE +L + D +R+ GKGDK R+VP+ Sbjct: 146 GTPE-----GQRNRAILETMYSCGLRVSEVTNLQISQLHFDAGFIRVVGKGDKERLVPIG 200 Query: 204 PSVRKAILEYYDLCPFDLNLNIQLP--------LFRGIRGKPLNPGVFQRYIRQLRRYLG 255 K I Y D + + +P LF RG L + I++L G Sbjct: 201 SDAVKYINIYKD------EVRVHVPVKKGQEDILFLNRRGSALTRVMIFLVIKELTAAAG 254 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + HT RHSFATHL+ G DLR++Q +LGH ++TT+IYT+++ +++ + Sbjct: 255 IDKQVSPHTFRHSFATHLVEGGADLRAVQEMLGHESITTTEIYTHLDR----EYLRDTLQ 310 Query: 316 QTHP 319 + HP Sbjct: 311 RFHP 314 >gi|257055038|ref|YP_003132870.1| tyrosine recombinase XerC subunit [Saccharomonospora viridis DSM 43017] gi|256584910|gb|ACU96043.1| tyrosine recombinase XerC subunit [Saccharomonospora viridis DSM 43017] Length = 329 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 91/316 (28%), Positives = 146/316 (46%), Gaps = 23/316 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ-------------L 66 ++ +L ER LS+ T ++Y D L FL E+ + + L Sbjct: 18 DYEDHLRDERMLSQHTTRAYVGDVVSLLAFLHGVNEDGADGPSAHEEHPDGEHSDGVNGL 77 Query: 67 SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126 +RA+++++ ++ R ++ ++F + +R + + + + + LP Sbjct: 78 HVGVLRAWLARQHEAGCSRATVARRVASARTFTAWAYRRGLLPSDPGIRLASPRPHRRLP 137 Query: 127 RAL--NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 L +E L V T H + R+ A++ LLY G+RISE L ++ D Sbjct: 138 GVLRMDEATELMRVSEAGTATGHP---VALRDHALIELLYATGVRISELCGLDIDDVDFD 194 Query: 185 QSTLRIQGKGDKIRIVPL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 + +R+ GKG K R+VP LPS R L P + LF G RGK ++P Sbjct: 195 RRVVRVLGKGRKQRMVPFGLPSERALRLWLRQGRPEVATADSGAALFLGARGKRVDPRTV 254 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 +R + + H LRHS ATH+L G DLRS+Q +LGH L+TTQ+YT+V Sbjct: 255 RRVVHDAVAAVPGAADIGPHGLRHSAATHMLDGGADLRSVQELLGHATLATTQLYTHVTV 314 Query: 304 KNGGDWMMEIYDQTHP 319 + + I+DQTHP Sbjct: 315 ER----LKAIHDQTHP 326 >gi|325963702|ref|YP_004241608.1| tyrosine recombinase XerC subunit [Arthrobacter phenanthrenivorans Sphe3] gi|323469789|gb|ADX73474.1| tyrosine recombinase XerC subunit [Arthrobacter phenanthrenivorans Sphe3] Length = 308 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 95/320 (29%), Positives = 145/320 (45%), Gaps = 15/320 (4%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 ME LP EL + + L ER +S TL+ Y D R L + +++ Sbjct: 1 MENPELP----VELAGALDAFARYLAAERAVSPHTLRGYVGDVRGLLSHASIEGAKRL-- 54 Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 L R ++ + +L R + ++ F + + L ++ K Sbjct: 55 ---EDLELGTFRRWLGAQSQAGAARTTLARRSASVRVFTAWALGEERIVADPALRLKAPK 111 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 + SLP L+ Q L+ L + E + RN AI+ LLY G+R+ E L + Sbjct: 112 REASLPGVLHSGQLARLLAG-LAQAAEEGAPLALRNRAIVELLYATGVRVGELAGLDIDD 170 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLN 239 + D+ TLR+ GKG+K R VP A+ ++ P LF G+RG ++ Sbjct: 171 LDPDRRTLRVIGKGNKERTVPYGVPAALAVDDWLRRGRPLVARSTSGQALFLGMRGGRVD 230 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 + + L + LG ++ H LRHS ATHLL G DLR++Q ILGH L+TTQIYT Sbjct: 231 QRQVRTMVNGLFKELGDTSASGPHALRHSAATHLLDGGADLRAVQEILGHSSLATTQIYT 290 Query: 300 NVNSKNGGDWMMEIYDQTHP 319 +V+ D + + Y Q HP Sbjct: 291 HVSV----DRLRKSYQQAHP 306 >gi|51892621|ref|YP_075312.1| recombinase [Symbiobacterium thermophilum IAM 14863] gi|51856310|dbj|BAD40468.1| recombinase [Symbiobacterium thermophilum IAM 14863] Length = 356 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 100/355 (28%), Positives = 172/355 (48%), Gaps = 55/355 (15%) Query: 2 EGNNL-PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA--------- 51 +G++L PE+ F L +L +E+ S+ TL+SY D QF +LA Sbjct: 9 QGDSLGPEVAGF---------LASLSVEKSASQHTLRSYRLDLAQFYAWLASGGTTAPVV 59 Query: 52 ------------FYTEEK-----ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 F +++ + + +R +++ IR++++ + Q+ R++ R LS Sbjct: 60 GGRGSGRTRRHDFAAQQEEPVRPVGLDELRAVNHLTIRSYLAFLQRQEFSRRTIARKLSC 119 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 ++SF KYL + + + + + K LP L+E++ L+ HT + Sbjct: 120 LRSFYKYLVRADLVPTNPVAGVHTPKLERRLPVFLDEEEIGGLLSQPDTHTP-----LGL 174 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ A+L LLY GLR+ E ++L +I + + + GKG K R VP+ +A+ Y Sbjct: 175 RDRALLELLYATGLRVGELVALNRGDIDYSEGWVIVWGKGRKERAVPVGSEALQALGHYL 234 Query: 215 -DLCPF--------DLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 D P + +L + PLF G L+ +R + + L L + H Sbjct: 235 RDGWPVLRARAPAAEQSLPEAKQPLFLNKLGGRLSDRSVRRLLDRYVSQLALSRQISPHK 294 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 +RH+FATH+L++G DLR++Q +LGH LSTTQIYT+V ++ + Y + HP Sbjct: 295 IRHTFATHMLNHGADLRAVQEMLGHASLSTTQIYTHVTTQR----LRTEYLRAHP 345 >gi|258648906|ref|ZP_05736375.1| tyrosine recombinase XerD [Prevotella tannerae ATCC 51259] gi|260850938|gb|EEX70807.1| tyrosine recombinase XerD [Prevotella tannerae ATCC 51259] Length = 296 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 93/281 (33%), Positives = 144/281 (51%), Gaps = 15/281 (5%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 +E+GLS T ++Y D + + FL +E I I ++ ++ F I R Sbjct: 13 LEQGLSDNTREAYMHDVEKLIDFL---QQEGIDILNVK---LDDLHRFTEALTDVGIMAR 66 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S+ R LSG++SF +L + + K LP L+ ++ VD +L Sbjct: 67 SINRILSGVRSFYHFLLLEGYLEADPTQLLESPKVGAHLPTVLSIEE----VDALLAVID 122 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 TK AR+ AI+ +LY CGLR+SE L ++ D+ +RI GKG+K RIVP+ P Sbjct: 123 QSTKE-GARDHAIIEILYSCGLRVSELCFLMLSDLYLDEGFIRIIGKGNKQRIVPISPRA 181 Query: 207 RKAILEYYDLCPFDLNL---NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 K L+ + L ++N+ +RGK L+ ++ G+ + + H Sbjct: 182 VKE-LKNWLLIRHEINIKKGEEDYVFVSALRGKHLSRITVFHNLKVYAAEAGITKNISPH 240 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 TLRH+FATHLL G +LR+IQ +LGH LSTTQ+YTN++ + Sbjct: 241 TLRHTFATHLLEGGANLRAIQMMLGHTDLSTTQVYTNIDRR 281 >gi|15966434|ref|NP_386787.1| site-specific tyrosine recombinase XerD [Sinorhizobium meliloti 1021] gi|307318393|ref|ZP_07597828.1| tyrosine recombinase XerD [Sinorhizobium meliloti AK83] gi|34222988|sp|Q92ME3|XERD_RHIME RecName: Full=Tyrosine recombinase xerD gi|15075705|emb|CAC47260.1| Probable integrase/recombinase DNA recombination protein [Sinorhizobium meliloti 1021] gi|306896075|gb|EFN26826.1| tyrosine recombinase XerD [Sinorhizobium meliloti AK83] Length = 311 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 94/313 (30%), Positives = 156/313 (49%), Gaps = 14/313 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ + ERG + TLQSYE D FL + + S ++R+++S Sbjct: 10 EAFLEMMSAERGAAANTLQSYERDLEDARSFL------RSRGTGLTDASADDLRSYLSHL 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q S R LS ++ F K+L + T+ + KK+ +LP+ L+ + L+ Sbjct: 64 AGQGFKASSQARRLSALRQFYKFLYAEGLRTDDPTGILDAPKKARTLPKTLSIEDVTRLI 123 Query: 139 DNVLLHTSHETKWIDA--RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 + + A R A++ LLY G+R+SE +SL + + L I+GKG+K Sbjct: 124 GQAEAEAKSGSDDVMAKLRMHALIELLYATGMRVSELVSLPASVLAQNGRFLIIRGKGNK 183 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 R+VPL + +A+ Y + + + L G G L VF R ++ L G+ Sbjct: 184 ERLVPLSQAAIRAMRAYGEALQEESADSPWLFPSNGKSGH-LPRQVFARDLKSLAARAGI 242 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 ++ + H LRH+FA+HLL+NG DLR++Q +LGH +STTQIYT+V + + ++ Sbjct: 243 RVAAISPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEER----LHDLVQ 298 Query: 316 QTHPSITQKDKKN 328 HP Q K++ Sbjct: 299 NHHPLAKQAKKQD 311 >gi|329851121|ref|ZP_08265878.1| tyrosine recombinase xerD [Asticcacaulis biprosthecum C19] gi|328839967|gb|EGF89539.1| tyrosine recombinase xerD [Asticcacaulis biprosthecum C19] Length = 315 Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 28/310 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +LQ + +ER ++ TL +Y D + K+T Q + LS ++ + Sbjct: 20 RQFLQMMAVERNAARPTLDAYGRDLDDLMATC------KVTPQGLLGLSDGDLAGYFQDL 73 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + SL+R S ++ F ++ +T + KK LP+ L+ + L+ Sbjct: 74 SERGLASSSLQRKRSAVRQFYRFCVAENLTGHDPSRKIAAAKKGLKLPKILSRDEVDALI 133 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 ++ R ++ + Y G+RISE + L + D + L I+GKG R Sbjct: 134 AAADAIAPNQA----VRLECLIEMAYASGMRISELVGLKLDAVARDPACLIIKGKGGVER 189 Query: 199 IVPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 +VPL PS R AI EY D+ P N L RG G + +R + QL Sbjct: 190 LVPLNPSARAAIKEYLDIRYTFLPAGDKANPYLFSSRGKEGH-----LTRRRVGQLLDQA 244 Query: 255 GL-----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 + P + H LRH+FATHLL G DLR +Q++LGH +STTQIYT+V G+ Sbjct: 245 AINAGIDPARVSPHVLRHAFATHLLEGGADLRVVQTLLGHADISTTQIYTHV----AGER 300 Query: 310 MMEIYDQTHP 319 + E+ + HP Sbjct: 301 LREVVETHHP 310 >gi|121606322|ref|YP_983651.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2] gi|120595291|gb|ABM38730.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2] Length = 345 Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 86/311 (27%), Positives = 158/311 (50%), Gaps = 23/311 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L + +E+ L+ T++ Y D + A + + + ++ +T +R ++++ + Sbjct: 22 YLAYVRVEKRLASRTVELYMADLEKLQ---ANARKAGVALTDVK---HTHLRRWVAQMHS 75 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + R + LSG + F +L + + + + ++R+ K + LP+AL+ +A+ L + Sbjct: 76 RGRSGRGIALILSGWRGFYTWLGREGLVPGNPVQDVRSPKIAKPLPKALSVDEAVQLA-S 134 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-------K 193 L + +++AR+ I LLYGCGLRISE + L Q + + +QG K Sbjct: 135 FELEATDGDPFLEARDQCITELLYGCGLRISELVGLDAQASGKARGWIDMQGGDAHVLGK 194 Query: 194 GDKIRIVPLLPSVRKAILEYYDLC-----PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 G+K R VP+ + K++ ++ P + LF RG L P + ++ Sbjct: 195 GEKRRSVPVGGAALKSLHKWLAARSLWARPGADGVQGGEALFINQRGSRLTPQHIRVRLK 254 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 Q + GL H LRHSFA+H+L + GDLR++Q +LGH ++TTQ YT ++ ++ Sbjct: 255 QRSQQAGLATPVHPHMLRHSFASHVLQSSGDLRAVQELLGHASITTTQAYTRLDFQH--- 311 Query: 309 WMMEIYDQTHP 319 + +IYD HP Sbjct: 312 -LAKIYDAAHP 321 >gi|21674453|ref|NP_662518.1| phage/XerD family site-specific recombinase [Chlorobium tepidum TLS] gi|34222894|sp|Q8KBZ5|XERC_CHLTE RecName: Full=Tyrosine recombinase xerC gi|21647640|gb|AAM72860.1| site-specific recombinase, phage/XerD family [Chlorobium tepidum TLS] Length = 336 Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 92/321 (28%), Positives = 157/321 (48%), Gaps = 29/321 (9%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT-EEKITIQTIRQLSYTEIRAFISKR 78 +L +LE R +S T+ +Y D QF FL + ++++ + ++R F+ Sbjct: 22 EFLVHLESTRNVSAKTVTAYTTDLIQFFEFLTDESGHQEMSAVDPELVEVADVRRFMGDL 81 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 I RS+ R L+ +KSF ++L S + + + +P L+E++A L Sbjct: 82 LDSGIKPRSIARKLASVKSFYRFLLDTGKIERSPLSLVLTPRLERKIPDFLSEEEASRLF 141 Query: 139 DNVLLHTSHET-----------KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 D ++L ++ AR+ A+L LLYGCGLR+SE L ++ Sbjct: 142 DQLVLSDQESVGPEQGQKAAVQRFELARDRAVLELLYGCGLRLSEVTGLENADVDLVHGF 201 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCP-----FDLNLNIQLPLFRGIRGKPLNPGV 242 L++ GKG K RIVP +A+ Y+++ +F +G+ + P + Sbjct: 202 LKVTGKGRKQRIVPFGEPAAEALRNYFEVRRNFFRILKEGAGETSKVFVTAKGRQIYPML 261 Query: 243 FQRYIRQLRRYLGLPLSTTA----HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 QR + RYL P++ +A H LRH+FATH+L+ G DL+S+ +LGH L+TT++Y Sbjct: 262 VQRMTK---RYLS-PVTESARKNPHMLRHTFATHMLNGGADLKSVSEMLGHSNLTTTELY 317 Query: 299 TNVNSKNGGDWMMEIYDQTHP 319 T+V + + + Y + HP Sbjct: 318 THVTF----NRLRDAYTKAHP 334 >gi|118592100|ref|ZP_01549494.1| probable site-specific integrase/recombinase [Stappia aggregata IAM 12614] gi|118435396|gb|EAV42043.1| probable site-specific integrase/recombinase [Stappia aggregata IAM 12614] Length = 307 Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 95/309 (30%), Positives = 145/309 (46%), Gaps = 21/309 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +N+L+ L ERG ++ TL Y D F FL +++ +I A++ Sbjct: 8 ENFLEMLAAERGAAENTLAGYRRDLEDFSGFLGR--------KSLASAQSEDISAYLGDL 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + S R LS +K F K+L + + KK SLP+ L+ + L+ Sbjct: 60 NRRGFAETSQARRLSALKQFYKFLYAEGTREDDPTRTLSAPKKRASLPKVLSIEDVDRLI 119 Query: 139 DNVLLHTSHETKWIDARNSA-----ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 + T K AR A ++ +LY GLR+SE ++L + D + I+GK Sbjct: 120 ETARAETERPRKSATARLRAQRMYTLIEVLYATGLRVSELVALPVTAALRDARLIEIKGK 179 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF--RGIRGKPLNPGVFQRYIRQLR 251 G K R+VPL + + A+ +Y L + LF G G L F R ++ L Sbjct: 180 GGKERLVPLSRAAQAAMKDYVGLRAAEGAYEKSPWLFPSHGDSGH-LTRQHFARELKDLA 238 Query: 252 RYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 GL + H LRH+FA+HLL NG DLR +Q +LGH +STTQIYT+V + + Sbjct: 239 VAAGLDAGKISPHVLRHAFASHLLQNGADLRVVQQLLGHADISTTQIYTHVLDER----L 294 Query: 311 MEIYDQTHP 319 E+ + HP Sbjct: 295 RELVESAHP 303 >gi|197122574|ref|YP_002134525.1| tyrosine recombinase XerD [Anaeromyxobacter sp. K] gi|196172423|gb|ACG73396.1| tyrosine recombinase XerD [Anaeromyxobacter sp. K] Length = 298 Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 91/300 (30%), Positives = 157/300 (52%), Gaps = 15/300 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L ++ +E+GL++ ++++Y D R++L L +++ + ++ EI+A +++ Sbjct: 11 FLAHVRVEKGLAENSVEAYGRDLRRYLEHL-----DELGVDAWERVGRGEIQAHLAELVR 65 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + RS R+LS I+S + L ++T+ + + + LP L+ + VD Sbjct: 66 RGLSPRSQARALSAIRSLHRLLAAERVTSADPSDEIESPRPGRRLPGLLSHDE----VDR 121 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LL R+ A+L LLY GLR+SE +SL ++ + L +GKG+K RIV Sbjct: 122 -LLAAPDVRSAAGIRDRAMLELLYATGLRVSELVSLQLNDVNLETRVLIARGKGNKERIV 180 Query: 201 PLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ +A+ Y + L + LF RG + F + + + R G+ Sbjct: 181 PVGAPAAEAVKAYLAVARERLLHGRRSKDLFVTPRGGRMTRQGFAKILDRCARRAGIRRR 240 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H LRHSFATHLL G DLR++Q +LGH +STTQIYT+V+ + + +YD+ HP Sbjct: 241 ISPHKLRHSFATHLLEGGADLRAVQEMLGHADVSTTQIYTHVDRTH----VKRLYDRFHP 296 >gi|119775871|ref|YP_928611.1| integrase/recombinase XerD [Shewanella amazonensis SB2B] gi|119768371|gb|ABM00942.1| integrase/recombinase XerD [Shewanella amazonensis SB2B] Length = 321 Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 98/301 (32%), Positives = 153/301 (50%), Gaps = 18/301 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L +GLS TL +Y D QF AF T + I + + L+ +R +++ R Sbjct: 35 FLDELWSLQGLSDNTLSAYRTDLCQFD---AFLTAKGIGLLALDSLT---LRDYLAYRFE 88 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q + S R LS ++ F ++ +E + + K SLP +L+E Q V+ Sbjct: 89 QGMAKTSTARMLSSLRRFYRHQLVSGTLSEDPTALIESPKLPKSLPGSLSEAQ----VEQ 144 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 +L S + ++ R+ A+L LLY GLR+SE + L + Q +RI GKG K R+V Sbjct: 145 LLAEPSSDDP-VECRDKAMLELLYATGLRVSELVGLGMSELGLRQGLVRIIGKGGKERLV 203 Query: 201 PLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 P+ V + LE + P + L +F RG+ + F I+ G+ Sbjct: 204 PM-GEVAQDALEQFLAGPRQMLLKQGATEVVFPSNRGQQMTRQTFWHRIKLYALRAGIST 262 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + +++++ H Sbjct: 263 ELSPHTLRHAFATHLLNHGADLRVVQLLLGHSSLSTTQIYTHVARTR----LADLHEKHH 318 Query: 319 P 319 P Sbjct: 319 P 319 >gi|153214077|ref|ZP_01949211.1| tyrosine recombinase XerD [Vibrio cholerae 1587] gi|124115503|gb|EAY34323.1| tyrosine recombinase XerD [Vibrio cholerae 1587] Length = 302 Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 94/304 (30%), Positives = 156/304 (51%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + ERGL++ T+ SY D + L ++A + + + I E ++++S+ Sbjct: 13 EQFLDTMWFERGLAENTVASYRNDLSKLLEWMA---QNQYRLDFISFAGLQEYQSWLSE- 68 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q S R LS I+ +YL + K+ + + + K LP+ L+E Q Sbjct: 69 --QNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQV---- 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL ++ R+ A+L LLY GLR++E +SLT +N+ Q +R+ GKG K R Sbjct: 123 -EALLSAPDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKER 181 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VP+ + + I E + L L Q +F RG+ + F I+ G+ Sbjct: 182 LVPMGENAIEWI-ETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAAIAGI 240 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + H LRH+FATHLL+ G DLR +Q +LGH LSTTQIYT+V ++ + ++++ Sbjct: 241 DVEKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHN 296 Query: 316 QTHP 319 + HP Sbjct: 297 EHHP 300 >gi|16272264|ref|NP_438476.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae Rd KW20] gi|260581222|ref|ZP_05849041.1| tyrosine recombinase XerD [Haemophilus influenzae RdAW] gi|1175025|sp|P44630|XERD_HAEIN RecName: Full=Tyrosine recombinase xerD gi|1573278|gb|AAC21974.1| integrase/recombinase (xerD) [Haemophilus influenzae Rd KW20] gi|260092147|gb|EEW76091.1| tyrosine recombinase XerD [Haemophilus influenzae RdAW] Length = 297 Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 89/295 (30%), Positives = 153/295 (51%), Gaps = 17/295 (5%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 IE+GLS+ T+QSY D +L + ++++T L +++ F+ +R + Sbjct: 16 IEKGLSENTVQSYRLDLTALCDWL---DKNDLSLET---LDAVDLQGFLGERLEKGYKAT 69 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R LS ++ +YL + K + + + K + LP+ L E+Q + LL+T Sbjct: 70 STARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQV-----SDLLNTP 124 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 + ++ R+ A+L LLY GLR++E +SLT +N+ Q +R+ GKG+K RIVP+ Sbjct: 125 NVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184 Query: 207 RKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHT 264 + ++ P LN +F R + + F ++ + + H Sbjct: 185 AYWVRQFMLYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADALSPHV 244 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LRH+FATHL+++G DLR +Q +LGH LSTTQIYT+V + + ++++ HP Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER----LKRLHERFHP 295 >gi|78043995|ref|YP_360612.1| tyrosine recombinase XerC [Carboxydothermus hydrogenoformans Z-2901] gi|77996110|gb|ABB15009.1| tyrosine recombinase XerC [Carboxydothermus hydrogenoformans Z-2901] Length = 297 Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 97/323 (30%), Positives = 155/323 (47%), Gaps = 36/323 (11%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 + +E + +L L +ER S T+ +YE D F FL ++ ++ +++ Sbjct: 1 MAEELKAFLNYLLLERNYSPNTIAAYERDILDFQEFLQG--------KSFLSVNEVDLKQ 52 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 F+ + R+ R + ++SF ++LK+ E+ L++ K +LP L + Sbjct: 53 FLVDILRKNRSRRTAARKMVALRSFYRFLKRCGFIKENPALSLEIPKIPKTLPEVLTVDE 112 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 +++ + RN A+L L YG GLRI E LT ++ Q +R+ GK Sbjct: 113 VFKVIEG-----QENSTPTGLRNRALLELFYGAGLRIGEIAGLTLNDLDLTQGYVRVTGK 167 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL----NPGVFQRYIR- 248 G + RIVPL Y L L L P F+ K G+ R IR Sbjct: 168 GRRQRIVPL---------GKYALDSLKLYLEAGRPAFKPKSEKLFLNQQGAGLTVRGIRY 218 Query: 249 ---QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 Q+ + GL T HT RHS+ATHLL G D+R++Q +LGH RLSTT+IYT+++ Sbjct: 219 LISQIVKKAGLNRKITPHTFRHSYATHLLEGGADIRAVQELLGHKRLSTTEIYTHLSK-- 276 Query: 306 GGDWMMEIYDQTHPSITQKDKKN 328 + + E+Y +THP +++KN Sbjct: 277 --ERLREVYLRTHPR--SREEKN 295 >gi|329296874|ref|ZP_08254210.1| tyrosine recombinase XerD [Plautia stali symbiont] Length = 297 Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 97/306 (31%), Positives = 159/306 (51%), Gaps = 23/306 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L ER L++ TL SY D + +L + +T+ L +++ F+++R Sbjct: 8 EQFLDALWTERNLAQNTLASYRQDLQTLTAWLHHHE------RTLLSLEAADLQQFLAER 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R+LS ++ +YL + K+ ++ + K LP+ L+E Q V Sbjct: 62 IEGGYKATSSARTLSAMRRLFQYLYREKLRSDDPSALLSAPKLPQRLPKDLSENQ----V 117 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + +L + + ++ R+ A+L LLY GLR+SE + LT ++ Q +R+ GKG+K R Sbjct: 118 ERLLQAPATDIP-LELRDKAMLELLYATGLRVSELVGLTLSDVSLRQGVVRVIGKGNKER 176 Query: 199 IVPLLPSVRKAI--LEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 +VPL +AI LE+Y P+ LN LF R + + F I+ Sbjct: 177 LVPL---GEEAIYWLEHYMEHGRPWLLNGQTIDVLFPSNRAQQMTRQTFWHRIKHYATLA 233 Query: 255 GLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + ++ Sbjct: 234 GIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQL 289 Query: 314 YDQTHP 319 + Q HP Sbjct: 290 HQQHHP 295 >gi|49085926|gb|AAT51315.1| PA3738 [synthetic construct] Length = 299 Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 91/300 (30%), Positives = 146/300 (48%), Gaps = 16/300 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L +E+GL+ T ++Y D +QF A+ + ++ I I ++ R Sbjct: 12 FLDALWLEKGLADNTREAYRNDLQQFN---AWLDGRGLRLEGI---GRDAILDHLAWRLE 65 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q RS R LSG++ F +Y + + E L + + LP++L+E Sbjct: 66 QGYKARSTARFLSGLRGFYRYCLRDGLIAEDPTLQVDLPQLGKPLPKSLSEADV-----E 120 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LL + R+ +L +LY CGLR+SE + LT + + Q +++ GKG K R+V Sbjct: 121 ALLAAPEVDDPLGLRDRTMLEVLYACGLRVSELVGLTLEQVNLRQGVVKVFGKGSKERLV 180 Query: 201 PLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 PL + Y DL LF +RG+ + F I+ + + S Sbjct: 181 PLGEEAIGWLERYLREARGDLLGGRPSDVLFPSLRGEQMTRQTFWHRIKHHAQVAAIGTS 240 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT++ + +++ + HP Sbjct: 241 ISPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIARAR----LQDLHARHHP 296 >gi|295111500|emb|CBL28250.1| Site-specific recombinase XerD [Synergistetes bacterium SGP1] Length = 308 Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 97/309 (31%), Positives = 141/309 (45%), Gaps = 43/309 (13%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 R S+ TL +Y D RQF +L E +R + +RA++ ++ Sbjct: 16 RSQSEHTLVNYASDLRQFAEYL-----EGCGASEVRSVEAPILRAYLRALFGWGYAKATV 70 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 R LS ++SF +LK+R + N+R +PRAL+E+ +V+ + Sbjct: 71 ARKLSSLRSFFAFLKERGVLERDPARNLRGPGAPRRIPRALSEE----VVERLFAAAGES 126 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 + + R++AIL +LYGCGLR+SE L +++ D+ L I GKG K R VP ++ Sbjct: 127 EEAL--RDTAILEVLYGCGLRVSELTGLRWEDVDLDERWLIILGKGSKERRVPFGRCAQR 184 Query: 209 AILEYYD---LCPFDLNLNIQLPLFRGIRG---------------KPLNPGVFQRYIRQL 250 A+ L PF +F G G KP+ R + L Sbjct: 185 ALTALRGEQALGPF---------VFVGHEGAGSPGREGRRGRTGQKPVTVRTVHRVVTAL 235 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 GL T H LRHS ATHLL +G L+ +Q LGH L+TTQIY V++ WM Sbjct: 236 AARAGLE-GVTPHVLRHSCATHLLEHGASLKFVQEFLGHESLATTQIYLTVSA----SWM 290 Query: 311 MEIYDQTHP 319 E Y HP Sbjct: 291 KESYAAAHP 299 >gi|149192204|ref|ZP_01870421.1| site-specific tyrosine recombinase XerD [Vibrio shilonii AK1] gi|148833962|gb|EDL50982.1| site-specific tyrosine recombinase XerD [Vibrio shilonii AK1] Length = 304 Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 96/303 (31%), Positives = 148/303 (48%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L ++ +ERGLS+ TL SY D L + E + I E + ++ + Sbjct: 15 EQFLDSMWMERGLSENTLSSYRND---LFKLLKWMNEHNYRLDFISLSGLQEYQTWLMDQ 71 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q+ S R LS I+ +YL + K+ ++ + + K LP+ L E Q Sbjct: 72 NYQQ---SSRARMLSAIRRLFQYLHREKLRSDDPTALLVSPKLPKRLPKDLTEDQV---- 124 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL I+ R+ A+L LLY GLR++E +SLT +NI Q +R+ GKG+K R Sbjct: 125 -TALLEAPDPNDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGNKER 183 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ + I E+ + P L +F R + + F I+ + Sbjct: 184 LVPMGENAIDWISEFIEKGRPALLGDKTSDVVFPSKRARQMTRQTFWHRIKFYAVLADID 243 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL+ G DLR +Q +LGH LSTTQIYT+V ++ + I+ Q Sbjct: 244 TELLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKNIHSQ 299 Query: 317 THP 319 HP Sbjct: 300 HHP 302 >gi|299068373|emb|CBJ39597.1| site-specific tyrosine recombinase [Ralstonia solanacearum CMR15] Length = 329 Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 97/325 (29%), Positives = 158/325 (48%), Gaps = 39/325 (12%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L+ ER LS+ TL SY R+ + I + QL IR +++ Sbjct: 23 YLDALKFERKLSEHTLASY---ARELAVLQQLGARFAAGIDPM-QLQPHHIRRMMAQLHG 78 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS-NSLPRALNEKQALTLVD 139 + RS+ R+LS + + K+L R +N ++ + KS LP+AL+ +QA+ L++ Sbjct: 79 GGLSGRSIARALSAWRGWYKWLALRDAAVTANPVDGIHAPKSPKRLPKALSVEQAVALME 138 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNIMDDQST---------L 188 ++ + + + R+ A+ L Y CGLR+SE L L D S + Sbjct: 139 HL---PGDDPEAV--RDRAVNELFYSCGLRLSELVGLDLRHAKAGDYASASWLDLEAREV 193 Query: 189 RIQGKGDKIRIVPL---------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239 + GKG+K R +P+ +A L D P D + LF RGK L Sbjct: 194 TVLGKGNKRRTLPVGSKAAEALAAWLAVRAQLAPPDAAPEDAHA-----LFLSARGKRLT 248 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 Q +++ G+P H LRHSFATH+L + GDLR++Q +LGH +++TQ+YT Sbjct: 249 QRQIQTRMKRNAIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT 308 Query: 300 NVNSKNGGDWMMEIYDQTHPSITQK 324 +++ ++ + +IYDQ HP +K Sbjct: 309 SLDFQH----LAKIYDQAHPRAKKK 329 >gi|219669469|ref|YP_002459904.1| tyrosine recombinase XerD [Desulfitobacterium hafniense DCB-2] gi|219539729|gb|ACL21468.1| tyrosine recombinase XerD [Desulfitobacterium hafniense DCB-2] Length = 322 Score = 125 bits (315), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 93/320 (29%), Positives = 153/320 (47%), Gaps = 29/320 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ERGLS T SYE D R+F FL + I + ++ F+ + Sbjct: 10 KKYLSYLNVERGLSPNTRNSYERDLRKFTAFLQQRGKNIIACEG------NDLFLFLLQE 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + Q R+L R L+ ++ F +L ++ + + K LP L+E L+ Sbjct: 64 KNQGRSARTLARYLATLRGFFAFLLGEEMREDDPTEYLSTPKLEQHLPHVLSEGSISKLM 123 Query: 139 DNVL------------------LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 + + K + RN A++ +LYGCGLR+SE + L + Sbjct: 124 GEGGDRDKEGPKPGKSSKKAGDSDSEGKDKGLLMRNMAMIEVLYGCGLRVSELVGLKVSD 183 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLN 239 I+ + TLR +GKG+K RIVP+ + + Y + L + LF RG L Sbjct: 184 IIFETRTLRCRGKGNKERIVPIGEYALEVLQNYLEHDRERLRGKHKTEVLFLNSRGTALT 243 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 +++ + G+ + H RHSFATHLL +G DLRS+Q +LGH ++TTQIYT Sbjct: 244 RQGIWDILKKWAQTHGVQENIYPHKFRHSFATHLLDHGADLRSVQEMLGHADIATTQIYT 303 Query: 300 NVNSKNGGDWMMEIYDQTHP 319 +++ + ++E++ + HP Sbjct: 304 HLSRQR----LLEVFRKAHP 319 >gi|331269460|ref|YP_004395952.1| tyrosine recombinase XerD [Clostridium botulinum BKT015925] gi|329126010|gb|AEB75955.1| tyrosine recombinase XerD [Clostridium botulinum BKT015925] Length = 292 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 86/295 (29%), Positives = 154/295 (52%), Gaps = 19/295 (6%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 +++ LSK T+++Y+ D +F FL E+ I I A++ + ++ D Sbjct: 13 LKKELSKNTIEAYKRDLIKFGEFLNKRHED------ILDSDMVSIMAYVQTLKKERKADS 66 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--LLH 144 S+ RSL I++F K+L K ++ ++N K +LP L VD V L Sbjct: 67 SIIRSLVAIRNFYKFLIKTGQNIDNPLINYEVPKNKRTLPETLT-------VDEVDKFLS 119 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 ++ R+ A+L L+Y G+++SE L +T ++ S ++ +G DK RI+P+ Sbjct: 120 APDCNEYKGIRDKAMLELMYATGMKVSELLRITIFDVNLKLSYIKCKGAKDKERIIPIGS 179 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 + EY + N++L LF +RG + F + +++ + + ++T Sbjct: 180 YAVNCLNEYLKVRDRMNADNLEL-LFCNLRGGKMTRQGFWKIVKKYAKDANINKKIDSYT 238 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LRHSFA HLL NG D++S+Q +LGH ++TTQIY++++ KN ++++Y + HP Sbjct: 239 LRHSFAVHLLQNGADMKSVQELLGHNTIATTQIYSSISKKNK---IVDVYKKAHP 290 >gi|311739716|ref|ZP_07713551.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC 33035] gi|311305532|gb|EFQ81600.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC 33035] Length = 305 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 83/291 (28%), Positives = 141/291 (48%), Gaps = 19/291 (6%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 RG ++ T++ Y D R ++ T + +R ++++ T+ +L Sbjct: 32 RGRAEATVRGYRADLRDL----------ARSVPTFAEFDLNSLRQWLAEAVTEGKSRSTL 81 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 R + K F + + + K LP L +QA L+ N + ++ E Sbjct: 82 ARRTAAAKGFSTWAVREGHLKRDVAARLVTPKVGRHLPTVLAPEQAGELMGNAV--SADE 139 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 ++ R+SAIL LLY G+R++E + L +I + TL + GKG+K R+VP + Sbjct: 140 VHFL--RDSAILELLYASGMRVAELVRLDLGDIDFQRGTLHVTGKGNKQRVVPFGHAAED 197 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 A+ ++ D ++ +F G RG ++ +R + + + G T H +RHS Sbjct: 198 ALKQWIDKGRGEIASAETEAVFVGSRGGRIDQRQVRRIVEKAAKVTGAQ-GLTPHGVRHS 256 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 ATHLL G DLR +Q +LGH L+TTQIYT+V+++ + +YDQ HP Sbjct: 257 AATHLLEGGADLRVVQELLGHSSLNTTQIYTHVSAQR----LQRVYDQAHP 303 >gi|114320644|ref|YP_742327.1| tyrosine recombinase XerD [Alkalilimnicola ehrlichii MLHE-1] gi|114227038|gb|ABI56837.1| tyrosine recombinase XerD [Alkalilimnicola ehrlichii MLHE-1] Length = 304 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 90/306 (29%), Positives = 158/306 (51%), Gaps = 16/306 (5%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 L E + +L L +E+GL + TL +Y D L F + + ++ + R+ ++ A+ Sbjct: 12 LAELEAFLDALWMEQGLGERTLSAYRSD---LLGFQRWLGGQGGSLLSARR---DQVLAY 65 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 + R Q RS+ R L+ ++ F +Y + E ++ + + LP L+E + Sbjct: 66 LGGRLGQGAKPRSVARLLTSLRRFYRYQLREGRVAEDPTRDVESPRLGRPLPGGLSESE- 124 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 V+ +L ET + R+ +L +LY GLR+SE + L+ + Q +R+ GKG Sbjct: 125 ---VERLLAAPDPETP-LGQRDRCMLEVLYASGLRVSELVGLSLSELSLSQGLVRVVGKG 180 Query: 195 DKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 + R+VPL + + + ++ + P L + +F RG+ L F +++ R Sbjct: 181 GRERLVPLGETALEQVQQWLREGRPALLGRRVSDAVFVTGRGEGLTRQAFWYRVKKHARS 240 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 +G+ + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + + + Sbjct: 241 VGITRPISPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARQR----LQTL 296 Query: 314 YDQTHP 319 + + HP Sbjct: 297 HAEHHP 302 >gi|319897879|ref|YP_004136076.1| site-specific tyrosine recombinase [Haemophilus influenzae F3031] gi|329122492|ref|ZP_08251077.1| site-specific tyrosine recombinase XerC [Haemophilus aegyptius ATCC 11116] gi|317433385|emb|CBY81765.1| site-specific tyrosine recombinase [Haemophilus influenzae F3031] gi|327473182|gb|EGF18604.1| site-specific tyrosine recombinase XerC [Haemophilus aegyptius ATCC 11116] Length = 299 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 96/308 (31%), Positives = 154/308 (50%), Gaps = 25/308 (8%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L IER +S T+ +Y+ + LA + I Q++ + +R +++ + Q + Sbjct: 12 LRIERQMSPHTITNYQHQLDATIKILA-----QQDIHAWTQVTPSVVRFILAESKKQGLK 66 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 ++SL LS ++ FL +L ++ + + K+ LP+ ++ +Q V +L + Sbjct: 67 EKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGKHLPKNMDGEQ----VQQLLAN 122 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 S E ID R+ AIL L+Y GLR+SE L +I +R+ GKG+K R+VP Sbjct: 123 DSKEP--IDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGR 180 Query: 205 SVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 AI E+ + P D LF G ++ Q+ + GL Sbjct: 181 YASHAIQEWLKVRALFNPKDE------ALFVSQLGNRISHRAIQKRLETWGIRQGLNSHL 234 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 H LRHSFATH+L DLR++Q +LGH LSTTQIYT++N ++ + E+YDQ HP Sbjct: 235 NPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LSEVYDQAHPR 290 Query: 321 ITQKDKKN 328 +K +K+ Sbjct: 291 AKRKKQKS 298 >gi|163803381|ref|ZP_02197257.1| tyrosine recombinase [Vibrio sp. AND4] gi|159172843|gb|EDP57685.1| tyrosine recombinase [Vibrio sp. AND4] Length = 305 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 92/305 (30%), Positives = 154/305 (50%), Gaps = 21/305 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA--FYTEEKITIQTIRQLSYTEIRAFIS 76 + +L + +ERGLS+ TL SY D + L+++ Y I++ +++ Y + Sbjct: 16 EQFLDAMWMERGLSENTLASYRNDLMKLLVWMEQHCYHLSFISLSGLQE--YQSYLVDLD 73 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 ++T + R LS I+ +Y+ + K+ ++ + + K LP+ ++E+Q Sbjct: 74 YKQTSR------ARMLSAIRRLFQYIHREKVRSDDPSALLVSPKLPQRLPKDISEEQV-- 125 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 + LL I+ R+ A+L LLY GLR++E +SLT +N+ Q +R+ GKG K Sbjct: 126 ---DALLDAPDPNDPIELRDKAMLELLYATGLRVTELVSLTMENVSLRQGVVRVTGKGGK 182 Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 R+VP+ + I + P L +F R + + F I+ G Sbjct: 183 ERLVPMGENAVDWIETFIKQGRPALLGEKTSDVVFPSKRARQMTRQTFWHRIKHYAVIAG 242 Query: 256 LPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 + + H LRH+FATHLL+ G DLR +Q +LGH LSTTQIYT+V ++ + +I+ Sbjct: 243 IDTGHLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIH 298 Query: 315 DQTHP 319 Q HP Sbjct: 299 SQHHP 303 >gi|149376980|ref|ZP_01894734.1| tyrosine recombinase XerC [Marinobacter algicola DG893] gi|149358757|gb|EDM47227.1| tyrosine recombinase XerC [Marinobacter algicola DG893] Length = 317 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 84/303 (27%), Positives = 155/303 (51%), Gaps = 24/303 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ L E+ S T SY D ++F +++ E R ++ ++R ++++ Sbjct: 21 FLRYLASEKRHSPRTCDSYRDDLKRFAVWV-----EHQPSPAWRSVTSHDLRRYVAQLSR 75 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + +G RS+ R LS I+ F +YL + + ++ L++R K LPR + Q L+D Sbjct: 76 EGLGGRSIARHLSAIRRFYEYLLREHLAVDNPALDIRAPKSGKRLPRVADVDQLNHLLDA 135 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 ++ R+ ++ L+Y GLR+SE L Q++ +R+ GKG K R++ Sbjct: 136 A------PDDPLEIRDLSMFELMYSSGLRLSELAGLDLQSVDVRGGEVRVLGKGRKERLL 189 Query: 201 PLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 P+ +A+ ++ + + P N L+ RG L+ Q + + G Sbjct: 190 PVGRRALEALAQWLEVRGAMAPDGENA-----LYVSRRGDRLSTRSIQSRLSRWGMSKGA 244 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 H LRHSFA+H+L + GDLR++Q +LGH ++TTQ+YT+++ ++ + ++YDQ Sbjct: 245 DQRLHPHLLRHSFASHMLESSGDLRAVQELLGHADIATTQVYTHLDFQH----LAKVYDQ 300 Query: 317 THP 319 +HP Sbjct: 301 SHP 303 >gi|225181363|ref|ZP_03734807.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] gi|225167944|gb|EEG76751.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] Length = 299 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 94/307 (30%), Positives = 153/307 (49%), Gaps = 23/307 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L L++E+ S T+++Y D QF FL EK + L Y IR F++ + Sbjct: 7 SFLTFLQVEKNASPHTIRNYAEDLGQFFQFL-----EKEGASFPQDLDYLAIRHFLALMQ 61 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 R++ R L+ I+SFL++L + +++ + + LP+ L VD Sbjct: 62 AHGYERRTIARKLAAIRSFLRHLNREGYLADTSWTTISTPRIGKKLPKFL-------YVD 114 Query: 140 NV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 V LL R+ AIL LY G+R+SE ++L Q++ ++ + GKG Sbjct: 115 EVFRLLAAPDSQTPAGLRDVAILEFLYSSGVRVSELVALELQSLDLNRGQAIVMGKGGCE 174 Query: 198 RIVPLLPSVRKAILEYYDLC-PFDLNLNI----QLPLFRGIRGKPLNPGVFQRYIRQLRR 252 R+V L R+++L Y + P L N + L+ G L+ +R + + R Sbjct: 175 RLVHLGRFARRSLLAYLEQGRPEILRKNADGDREGALWLNKYGTRLSDRGVRRIVEKYVR 234 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 + L + H++RHSFATHLL+ G DLR +Q +LGH +STTQIYT++ D + E Sbjct: 235 QVSLAKGISPHSIRHSFATHLLNAGADLRVVQELLGHVNISTTQIYTHITR----DQLKE 290 Query: 313 IYDQTHP 319 +Y+ HP Sbjct: 291 VYNGAHP 297 >gi|322831506|ref|YP_004211533.1| tyrosine recombinase XerD [Rahnella sp. Y9602] gi|321166707|gb|ADW72406.1| tyrosine recombinase XerD [Rahnella sp. Y9602] Length = 319 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 94/303 (31%), Positives = 154/303 (50%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L IER L++ TL SY D + L +L + + + S +++ F+S+R Sbjct: 30 EQFLDMLWIERNLAENTLSSYRQDLKSLLGWLHHNNTDLLHV------SAEDLQLFLSER 83 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +Y+ + + + + + K LP+ L+E Q V Sbjct: 84 IEGGYKATSSARLLSAMRRLFQYMNRESVRQDDPTALLSSPKLPQRLPKDLSEAQ----V 139 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D +L S + ++ R+ A+L LLY GLR+SE + LT ++ Q +R+ GKG+K R Sbjct: 140 DALLASPSVDVP-LELRDKAMLELLYATGLRVSELVGLTLSDLSLRQGVVRVIGKGNKER 198 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ I Y++ P+ LN +F R + + F I+ G+ Sbjct: 199 LVPMGEEAVYWIENYFEHGRPWLLNGQSLDVVFPSNRAQQMTRQTFWHRIKHYAILAGID 258 Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + ++ Q Sbjct: 259 AERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKLLHQQ 314 Query: 317 THP 319 HP Sbjct: 315 HHP 317 >gi|322834929|ref|YP_004214956.1| tyrosine recombinase XerC [Rahnella sp. Y9602] gi|321170130|gb|ADW75829.1| tyrosine recombinase XerC [Rahnella sp. Y9602] Length = 303 Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 91/303 (30%), Positives = 156/303 (51%), Gaps = 21/303 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ L +ER LS LT +Y +RQ +A E I I +QL ++R +++ Sbjct: 13 EAFLRYLHVERQLSPLTTTNY---SRQLEALIAISGE--IGISHWQQLDAPKVRMLLARS 67 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + +G SL +S ++SFL +L ++ + + + + + LP+ L+ + L+ Sbjct: 68 KRAGLGPSSLALRMSSLRSFLDWLVRQGVLSANPAKGISTPRSPKHLPKNLDVDEVNKLL 127 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D L + R+ A+L ++YG GLR+SE + + ++I +R+ GKG K R Sbjct: 128 DIDL------NDPLSVRDRAMLEVMYGGGLRLSELVGIDCKHIDMASGEVRVLGKGSKER 181 Query: 199 IVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 VP+ R A+ LE++ D N +F +G ++ Q+ + G+ Sbjct: 182 KVPI---GRTAVIWLEHWLERRADFNPQDD-AMFLSSKGSRISARNVQKRFAEWGVKQGV 237 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 H LRHSFATH+L + GDLR++Q +LGH LSTTQIYT+++ ++ + +YD Sbjct: 238 NSHIHPHKLRHSFATHVLESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LATVYDA 293 Query: 317 THP 319 HP Sbjct: 294 AHP 296 >gi|15598933|ref|NP_252427.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa PAO1] gi|107103253|ref|ZP_01367171.1| hypothetical protein PaerPA_01004322 [Pseudomonas aeruginosa PACS2] gi|116051736|ref|YP_789425.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa UCBPP-PA14] gi|218889984|ref|YP_002438848.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa LESB58] gi|254236648|ref|ZP_04929971.1| integrase/recombinase XerD [Pseudomonas aeruginosa C3719] gi|254242429|ref|ZP_04935751.1| integrase/recombinase XerD [Pseudomonas aeruginosa 2192] gi|296387753|ref|ZP_06877228.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa PAb1] gi|313109145|ref|ZP_07795116.1| integrase/recombinase XerD [Pseudomonas aeruginosa 39016] gi|34223067|sp|Q9HXQ6|XERD_PSEAE RecName: Full=Tyrosine recombinase xerD gi|9949906|gb|AAG07125.1|AE004793_2 integrase/recombinase XerD [Pseudomonas aeruginosa PAO1] gi|115586957|gb|ABJ12972.1| integrase/recombinase XerD [Pseudomonas aeruginosa UCBPP-PA14] gi|126168579|gb|EAZ54090.1| integrase/recombinase XerD [Pseudomonas aeruginosa C3719] gi|126195807|gb|EAZ59870.1| integrase/recombinase XerD [Pseudomonas aeruginosa 2192] gi|218770207|emb|CAW25969.1| integrase/recombinase XerD [Pseudomonas aeruginosa LESB58] gi|310881618|gb|EFQ40212.1| integrase/recombinase XerD [Pseudomonas aeruginosa 39016] Length = 298 Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 91/300 (30%), Positives = 146/300 (48%), Gaps = 16/300 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L +E+GL+ T ++Y D +QF A+ + ++ I I ++ R Sbjct: 12 FLDALWLEKGLADNTREAYRNDLQQFN---AWLDGRGLRLEGI---GRDAILDHLAWRLE 65 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q RS R LSG++ F +Y + + E L + + LP++L+E Sbjct: 66 QGYKARSTARFLSGLRGFYRYCLRDGLIAEDPTLQVDLPQLGKPLPKSLSEADV-----E 120 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LL + R+ +L +LY CGLR+SE + LT + + Q +++ GKG K R+V Sbjct: 121 ALLAAPEVDDPLGLRDRTMLEVLYACGLRVSELVGLTLEQVNLRQGVVKVFGKGSKERLV 180 Query: 201 PLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 PL + Y DL LF +RG+ + F I+ + + S Sbjct: 181 PLGEEAIGWLERYLREARGDLLGGRPSDVLFPSLRGEQMTRQTFWHRIKHHAQVAAIGTS 240 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT++ + +++ + HP Sbjct: 241 ISPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIARAR----LQDLHARHHP 296 >gi|317508798|ref|ZP_07966443.1| tyrosine recombinase XerD [Segniliparus rugosus ATCC BAA-974] gi|316252907|gb|EFV12332.1| tyrosine recombinase XerD [Segniliparus rugosus ATCC BAA-974] Length = 340 Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 93/335 (27%), Positives = 159/335 (47%), Gaps = 35/335 (10%) Query: 9 IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68 + S +L ++ +++L +L +ERG SK T+ SY D +++ FL + + + Q++ Sbjct: 15 LTSDKLSEQVKSYLDHLTVERGASKHTVSSYRRDLDRYMDFL-----RERSATDLAQVTS 69 Query: 69 TEIRAFISKRRTQK---IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 +I F++ R + + S R LS ++ K+ + + ++ + L Sbjct: 70 AQIAEFLAWSRDPEGMGLAQSSAARGLSAVRGLHKFAVLEGMAAQDAAHGVKPPQPGRRL 129 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 P+AL Q + +++ + S R++A+L L+Y G R+SEA+ L ++ Sbjct: 130 PKALPVDQVIAIIEASGMADSESDIPRALRDAALLELMYCTGCRVSEAVGLNLLDVDFQA 189 Query: 186 STLRIQGKGDKIRIVPLL-PSVRKAILEYYDLCPFDLNLNIQLP---------------- 228 + R+ GKGDK R+VPL P+V A L+ Y + L ++P Sbjct: 190 RSARVLGKGDKERLVPLGGPAV--AALDAYLVRGRPALLAARIPRGSASRSYSREAPPGK 247 Query: 229 ----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284 LF RG+ + +R G+ + HTLRHS ATHLL G D+R +Q Sbjct: 248 ATNALFLNARGERFSRQSTWASLRHAAAKAGVKAEISPHTLRHSCATHLLEGGADVRVVQ 307 Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 +LGH + TTQIYT V++ + E+Y HP Sbjct: 308 ELLGHASVVTTQIYTMVSATT----LREVYATAHP 338 >gi|288553072|ref|YP_003425007.1| integrase/recombinase [Bacillus pseudofirmus OF4] gi|288544232|gb|ADC48115.1| integrase/recombinase [Bacillus pseudofirmus OF4] Length = 321 Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 90/308 (29%), Positives = 148/308 (48%), Gaps = 25/308 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +++ +++E+ S T++SY D F F+ ++ ++Y +R++++ Sbjct: 30 QMFVRYMQVEKNYSLHTVKSYLSDIEDFCHFM-----KEHNCAAFSDVTYLFVRSYLTFL 84 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S+ R +S ++S +L + + T + K+++ LP L E++ L Sbjct: 85 YDKAYARNSVARKISSMRSLFHFLMREEELTRNVFAETHLPKQASKLPSFLYEEEMDELF 144 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 +T +D R+ AIL LLY G+R+ E L +I T ++GKG+K R Sbjct: 145 KAFEGNTP-----LDKRDRAILELLYATGMRVGECSQLDVADIDLRIGTAFVKGKGNKER 199 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNI-------QLPLFRGIRGKPLNPGVFQRYIRQLR 251 VP+ A+ EY + D +N+ LF RG PL +R + + Sbjct: 200 YVPIGSFACDALHEYIE----DARVNLLKKGNSETKRLFLNYRGGPLTDRSIRRMLAKRV 255 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 + H LRHSFATHLL+NG DLR +Q +LGH LSTTQ+YT+V D + Sbjct: 256 EEASMQKHIRPHDLRHSFATHLLNNGADLRVVQELLGHEHLSTTQVYTHVTK----DRLR 311 Query: 312 EIYDQTHP 319 E+Y HP Sbjct: 312 EVYKNHHP 319 >gi|145635531|ref|ZP_01791230.1| tyrosine recombinase [Haemophilus influenzae PittAA] gi|145267194|gb|EDK07199.1| tyrosine recombinase [Haemophilus influenzae PittAA] Length = 295 Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 96/304 (31%), Positives = 152/304 (50%), Gaps = 25/304 (8%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L IER +S T+ +Y+ + LA + I Q++ + +R +++ + Q + Sbjct: 12 LRIERQMSPHTITNYQHQLDAIIKILA-----QQDIHAWTQVTPSVVRFILAESKKQGLK 66 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 ++SL LS ++ FL +L ++ + + K+ LP+ ++ +Q V +L + Sbjct: 67 EKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQ----VQQLLAN 122 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 S E ID R+ AIL L+Y GLR+SE L +I +R+ GKG+K R+VP Sbjct: 123 DSKEP--IDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGR 180 Query: 205 SVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 AI E+ + P D LF G ++ Q+ + GL Sbjct: 181 YASHAIQEWLKVRALFNPKDE------ALFVSQLGNRISHRAIQKRLETWGIRQGLNSHL 234 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 H LRHSFATH+L DLR++Q +LGH LSTTQIYT++N ++ + E+YDQTHP Sbjct: 235 NPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEMYDQTHPR 290 Query: 321 ITQK 324 +K Sbjct: 291 AKRK 294 >gi|262037917|ref|ZP_06011342.1| tyrosine recombinase XerC [Leptotrichia goodfellowii F0264] gi|261748060|gb|EEY35474.1| tyrosine recombinase XerC [Leptotrichia goodfellowii F0264] Length = 315 Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 95/301 (31%), Positives = 152/301 (50%), Gaps = 18/301 (5%) Query: 26 EIERGLSKLTLQSYECDTRQFLIFLAFYTE--EKITIQTIRQLSYTEIRAFISKRRTQK- 82 E+ G S T++SY+ D QF+ +L Y E E ++TI S+ SK + Sbjct: 22 EVITGKSYNTIKSYKKDIMQFIDYLNEYEEIDEFENVETITFRSFIAYLNSTSKENNDER 81 Query: 83 --IGDRSLKRSLSGIKSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + RS+ R +S +++F KYL+++KI T + N + M +K LP L + L Sbjct: 82 KVVSKRSINRKISALRTFFKYLQEKKIVKTNKVNYITMPKFEKE--LPNVLGREDINKLR 139 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D V + +K R+ I+ LLY G+R SE + L I ++ LR+ GKG+K R Sbjct: 140 DAV-----NTSKITGIRDRLIIELLYSSGIRASELIDLNEYMINIEERELRVIGKGNKER 194 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 I + +K + +Y + + + +F +G+ L +R I + GL Sbjct: 195 ITFFSENSKKWLEKYIEEKKEKYSNYTKDVVFANSKGEKLTTRSLRRLIADYAKKAGLQK 254 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 T H RH+FAT LL+NG D+R +Q +LGH +STTQ+YT+V+ + ++Y TH Sbjct: 255 EVTPHVFRHTFATELLNNGVDIRYLQELLGHSSISTTQVYTHVSKA----LLKDVYMNTH 310 Query: 319 P 319 P Sbjct: 311 P 311 >gi|152989006|ref|YP_001346765.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa PA7] gi|150964164|gb|ABR86189.1| tyrosine recombinase XerD [Pseudomonas aeruginosa PA7] Length = 298 Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 91/307 (29%), Positives = 149/307 (48%), Gaps = 30/307 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L +E+GL+ T ++Y D QF +L + + + I ++ R Sbjct: 12 FLDALWLEKGLADNTREAYRNDLEQFNAWLDGHG------LRLEGVGRDAILDHLAWRLE 65 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q RS R LSG++ F +Y + + E L + + LP++L+E Sbjct: 66 QGYKARSTARFLSGLRGFYRYCLRDGLIAEDPTLQVDLPQLGKPLPKSLSEADV-----E 120 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LL + R+ +L +LY CGLR+SE + LT + + Q +++ GKG K R+V Sbjct: 121 ALLAAPEVDDPLGLRDRTMLEVLYACGLRVSELVGLTLEQVNLRQGVVKVFGKGSKERLV 180 Query: 201 PLLPS--------VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 PL +R+A + P D+ LF +RG+ + F I++ + Sbjct: 181 PLGEEAIGWLERYLREARADLLGGRPSDV-------LFPSLRGEQMTRQTFWHRIKRHAQ 233 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 + S + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT++ + + Sbjct: 234 VAAIGKSISPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIARAR----LQD 289 Query: 313 IYDQTHP 319 ++ + HP Sbjct: 290 LHARHHP 296 >gi|84625422|ref|YP_452794.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84369362|dbj|BAE70520.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 305 Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 90/310 (29%), Positives = 150/310 (48%), Gaps = 19/310 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-----RQLSYTEIRAF 74 +L L++ER +S TL +Y D + + E QT QL +R F Sbjct: 6 EFLTYLQVERQVSAHTLDAYRRDLAALVAWTGERNAEDGAQQTATPVDSAQLDSAHLRQF 65 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 ++ + + +SL+R LS +S+ +L K S +R K LP+ L+ +A Sbjct: 66 VAAEHRRGLSPKSLQRRLSACRSYYAWLLKHGRIAASPAAALRAPKAQRKLPQVLDADEA 125 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 + LV+ + R+ A+L L Y GLR+SE +L +++ D + + GKG Sbjct: 126 VRLVEVP------TDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVMVLGKG 179 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 K R+VP+ A+ ++ D + +F G G ++ Q I+QL Sbjct: 180 SKQRLVPVGSHAIAALRQWRR----DSGASADAHVFPGRAGGAISQRAVQIRIKQLAVRQ 235 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ H LRHSFA+H+L + GDLR +Q +LGH ++TTQIYT+++ ++ + ++Y Sbjct: 236 GMFKDVHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQH----LAKVY 291 Query: 315 DQTHPSITQK 324 D HP +K Sbjct: 292 DAAHPRARRK 301 >gi|229845511|ref|ZP_04465639.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae 6P18H1] gi|229811527|gb|EEP47228.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae 6P18H1] Length = 295 Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 96/304 (31%), Positives = 152/304 (50%), Gaps = 25/304 (8%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L IER +S T+ +Y+ + LA + I Q++ + +R +++ + Q + Sbjct: 12 LRIERQMSPHTITNYQHQLDAIIKILA-----QQDIHAWTQVTPSVVRFILAESKKQGLK 66 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 ++SL LS ++ FL +L ++ + + K+ LP+ ++ +Q V +L + Sbjct: 67 EKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQ----VQQLLAN 122 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 S E ID R+ AIL L+Y GLR+SE L +I +R+ GKG+K R+VP Sbjct: 123 DSKEP--IDIRDRAILELMYSSGLRLSELHGLDLNSINTRVREVRVIGKGNKERVVPFGR 180 Query: 205 SVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 AI E+ + P D LF G ++ Q+ + GL Sbjct: 181 YASHAIQEWLKVRALFNPKDE------ALFVSQLGNRISHRAIQKRLETWGIRQGLNSHL 234 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 H LRHSFATH+L DLR++Q +LGH LSTTQIYT++N ++ + E+YDQTHP Sbjct: 235 NPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEMYDQTHPR 290 Query: 321 ITQK 324 +K Sbjct: 291 AKRK 294 >gi|296117640|ref|ZP_06836224.1| tyrosine recombinase XerC [Corynebacterium ammoniagenes DSM 20306] gi|295969371|gb|EFG82612.1| tyrosine recombinase XerC [Corynebacterium ammoniagenes DSM 20306] Length = 281 Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 89/292 (30%), Positives = 144/292 (49%), Gaps = 31/292 (10%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 G S+ T++ Y D L+ LA TE+ + +R++++ +L Sbjct: 17 GRSEATIKGYTSD----LLDLAQTTED------FASFNLAHLRSWLASAVAAGKARSTLA 66 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 R + K+F + K+ + K LP+ LNE++A T + N H+ E Sbjct: 67 RRTAAAKAFSTWAVKQGYLRTDEAAKLSTPKVPKQLPKVLNEQEAATAMGNA--HSVDEL 124 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 + R++A+L LLY G+R+SE + +I + T+R+ GKG+K R+VP + +KA Sbjct: 125 HSL--RDAAMLELLYATGMRVSELTGIDLSDIDSSRQTIRVLGKGNKQRVVPYGQAAQKA 182 Query: 210 ILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 + DL + P LF G RG ++ RQ+RR + + H LRH Sbjct: 183 L----DLWLARRAEMAKDPSALFVGTRGGRIDQ-------RQVRRVVEAAGQVSPHALRH 231 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 S ATH+L G DLR +Q +LGH L TTQ+YT+V S+ + ++++Q HP Sbjct: 232 SAATHMLEGGADLRVVQELLGHSSLQTTQVYTHVTSER----LKKVFNQAHP 279 >gi|15601958|ref|NP_245030.1| site-specific tyrosine recombinase XerD [Pasteurella multocida subsp. multocida str. Pm70] gi|31563286|sp|Q9CPF0|XERD_PASMU RecName: Full=Tyrosine recombinase xerD gi|12720303|gb|AAK02177.1| XerD [Pasteurella multocida subsp. multocida str. Pm70] Length = 297 Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 93/301 (30%), Positives = 157/301 (52%), Gaps = 17/301 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L + IE+ LS+ T+ SY D + +L EK + T+ L +++ F+ +R Sbjct: 10 FLNEIWIEKQLSQNTIASYRLDLTALIQWL-----EKQQL-TLINLDAIDLQTFLGERLN 63 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q S R LS ++ +YL + K T+ + + K + LP+ L E+Q L+++ Sbjct: 64 QGYKATSTARLLSAMRKLFQYLYREKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTDLLNS 123 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + ++ R+ A++ LLY GLR++E +SLT +NI +Q +R+ GKG+K RIV Sbjct: 124 PDVDIP-----LELRDKAMMELLYATGLRVTELVSLTIENININQGIVRVVGKGNKERIV 178 Query: 201 PLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL- 258 P+ I ++ PF L+ +F R + F I+ + + Sbjct: 179 PIGEEATYWIRQFMLYGRPFLLHGQSSDVVFPSKRALQMTRQTFWHRIKHYALLSDIDIN 238 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 S + H LRH+FATHL+++G DLR +Q +LGH LSTTQIYT+V + + ++++ H Sbjct: 239 SLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER----LKHLHERYH 294 Query: 319 P 319 P Sbjct: 295 P 295 >gi|237785754|ref|YP_002906459.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385] gi|237758666|gb|ACR17916.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385] Length = 327 Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 90/312 (28%), Positives = 154/312 (49%), Gaps = 33/312 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L L +G S+ T+++Y D + L T +++T+ IR+ +RA ++ Sbjct: 36 EDYLDFLTFTKGRSENTVKAYRNDLHSLVDGLT--TVDQLTLHHIRRWQADALRAGHARS 93 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 SL R S +++F ++L+ R I + + + +LPR L Q ++ Sbjct: 94 --------SLSRRASAVRNFGRWLEHRGIVQSDPASRLSSPRPDKTLPRVLAADQTAEIL 145 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 N+ + E I R+ A++ +YG G+R+SE L ++ + T+ I GKG+K R Sbjct: 146 HNLEVGAEEEDP-IALRDLAMVEFMYGTGVRVSELCRLNIGDLDFARQTVTILGKGNKQR 204 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLN-----IQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 +VP S A+ + D+ + N +F G RG ++P RQ+R Sbjct: 205 VVPFGESAAHALKRWIDIGRPAIAANGHHKDADEAVFLGKRGGRIDP-------RQVRTV 257 Query: 254 LGLPLSTTA------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 + ST + H LRHS AT +L G DLR +Q +LGH L+TTQIYT+V+S+ Sbjct: 258 VHQATSTVSGGDVSPHALRHSAATDVLEGGADLRVVQEMLGHASLATTQIYTHVDSER-- 315 Query: 308 DWMMEIYDQTHP 319 + +++Q HP Sbjct: 316 --LKAVFNQAHP 325 >gi|315604538|ref|ZP_07879601.1| tyrosine recombinase XerC [Actinomyces sp. oral taxon 180 str. F0310] gi|315313550|gb|EFU61604.1| tyrosine recombinase XerC [Actinomyces sp. oral taxon 180 str. F0310] Length = 303 Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 92/304 (30%), Positives = 146/304 (48%), Gaps = 16/304 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W + L RG+S T+++Y D R L F A E + L+ IR++++ Sbjct: 9 WGEYLRHGRGMSDHTIEAYLGDLRSLLSF-AGLAWEASAAELAEALTQRRIRSWLADTLA 67 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + ++ R + ++ F + + I + + + LP L+E +A L++ Sbjct: 68 RGGARSTIARHTASVRHFTAWATREGILAHDPAALLTSPRADQRLPAPLDESEARLLLN- 126 Query: 141 VLLHTSHETKWIDA---RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 H E + RN AIL L+Y CGLR+SEA L ++ + T+R+ GKG+K Sbjct: 127 ---HARDEARGGGPSQLRNWAILELIYACGLRVSEACGLDISSLNREALTVRVTGKGNKE 183 Query: 198 RIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 R+VP P A L+++ L L LF G RG ++P + + + G Sbjct: 184 RVVPYGPPAADA-LDHWLLRGRALLAREGSGDALFLGDRGGRIDPRIVRSMVHAAAARAG 242 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H LRHS ATHLL G DLR++Q +LGH L+TTQ YT+V++ + IY Sbjct: 243 VH-DVAPHGLRHSTATHLLQGGADLRAVQEMLGHASLATTQRYTHVDTAR----LSAIYQ 297 Query: 316 QTHP 319 + HP Sbjct: 298 RAHP 301 >gi|145632561|ref|ZP_01788295.1| tyrosine recombinase [Haemophilus influenzae 3655] gi|148825411|ref|YP_001290164.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittEE] gi|229845011|ref|ZP_04465148.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae 6P18H1] gi|260582592|ref|ZP_05850382.1| tyrosine recombinase XerD [Haemophilus influenzae NT127] gi|144986756|gb|EDJ93308.1| tyrosine recombinase [Haemophilus influenzae 3655] gi|148715571|gb|ABQ97781.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittEE] gi|229812145|gb|EEP47837.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae 6P18H1] gi|260094403|gb|EEW78301.1| tyrosine recombinase XerD [Haemophilus influenzae NT127] gi|301169019|emb|CBW28616.1| site-specific tyrosine recombinase [Haemophilus influenzae 10810] Length = 297 Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 89/295 (30%), Positives = 152/295 (51%), Gaps = 17/295 (5%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 IE+GLS+ T+QSY D +L + ++++T L +++ F+ +R + Sbjct: 16 IEKGLSENTVQSYRLDLTALCDWL---DKNDLSLET---LDAVDLQGFLGERLEKGYKAT 69 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R LS ++ +YL + K + + + K + LP+ L E+Q + LL+T Sbjct: 70 STARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQV-----SDLLNTP 124 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 ++ R+ A+L LLY GLR++E +SLT +N+ Q +R+ GKG+K RIVP+ Sbjct: 125 DVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184 Query: 207 RKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHT 264 + ++ P LN +F R + + F ++ + + H Sbjct: 185 AYWVRQFMLYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADALSPHV 244 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LRH+FATHL+++G DLR +Q +LGH LSTTQIYT+V + + ++++ HP Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER----LKRLHERFHP 295 >gi|134096115|ref|YP_001101190.1| tyrosine recombinase xerC [Herminiimonas arsenicoxydans] Length = 296 Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 83/278 (29%), Positives = 138/278 (49%), Gaps = 25/278 (8%) Query: 62 TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121 + +S+ +IR F ++ + + RS+ R LS + F +L ++ + + ++ K+ Sbjct: 28 ALSAISHFQIRKFAAQLHAKGLNARSIARKLSAWRGFFTWLSEQNAVASNPVDGIKAPKR 87 Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR----NSAILYLLYGCGLRISEALSL- 176 + LP+AL A+ LV ++ K DA N A+ LLY GLR SE + L Sbjct: 88 NKPLPKALAADDAVRLVS-----SNSPGKNADATMQLCNRAMFELLYSSGLRASELVGLD 142 Query: 177 ---------TPQNIMD-DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226 T +D D + GKG K+R P+ A+ + + L L+ Sbjct: 143 LKYAQENRYTSAGWIDFDAHEAMVTGKGSKMRSAPIGQPAIDALKAWLAVRDTLLKLDPH 202 Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286 PLF RG ++ V Q ++ + +GLP+ H LRHSFA+H+L + GDLR++Q + Sbjct: 203 -PLFLSERGTRISARVLQLRLKAHAQAVGLPMDVHPHVLRHSFASHVLQSSGDLRAVQEM 261 Query: 287 LGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 LGH +S TQIYT+++ + + ++YD HP +K Sbjct: 262 LGHASISATQIYTSLDFQR----LAQVYDAAHPRAKKK 295 >gi|89902211|ref|YP_524682.1| phage integrase [Rhodoferax ferrireducens T118] gi|89346948|gb|ABD71151.1| phage integrase [Rhodoferax ferrireducens T118] Length = 337 Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 89/318 (27%), Positives = 152/318 (47%), Gaps = 30/318 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+++ +E+ L++ T++ Y D ++ A E + +Q + IR ++++ Sbjct: 23 ERYLEHVRVEKRLAQRTVELYALDLQKLSQQAAQAGVELLQVQN------SHIRRWVAQM 76 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + LSG + F +L + + + + + ++R K LP+AL+ QA+ L Sbjct: 77 NAGGRSGRGIALILSGWRGFYVWLGREGLISSNPVQDVRAPKAGKPLPKALSVDQAVQLA 136 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL------TPQNIMDDQST-LRIQ 191 + W++AR++A++ LLYG GLR+ E L + + +D Q + Sbjct: 137 S---FASGSNDPWLEARDAAMVELLYGAGLRVGELTGLDTVASSSARGWIDLQGGEAHVL 193 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDL----------NLNIQLPLFRGIRGKPLNPG 241 GKG K R VP+ AI + L L N Q LF G G L+ Sbjct: 194 GKGGKRRSVPVGAKAVLAITHWLALRDQALAQAKPGLQGPGGNAQAALFMGRNGTRLSAQ 253 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + +RQ GL H LRHSFA+HLL + DLR++Q +LGH ++TTQ YT + Sbjct: 254 SIWQRLRQRSLQAGLTTPVHPHMLRHSFASHLLQSSSDLRAVQELLGHASITTTQAYTRL 313 Query: 302 NSKNGGDWMMEIYDQTHP 319 + ++ + + YD HP Sbjct: 314 DFQH----LAKAYDAAHP 327 >gi|240948880|ref|ZP_04753236.1| site-specific tyrosine recombinase XerC [Actinobacillus minor NM305] gi|240296695|gb|EER47306.1| site-specific tyrosine recombinase XerC [Actinobacillus minor NM305] Length = 300 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 89/301 (29%), Positives = 156/301 (51%), Gaps = 19/301 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L E+ +S TL +Y+ RQ A +++I+ + +++ + IR +S+ Q +G Sbjct: 16 LRAEKQVSPHTLSNYQ---RQLQAVCAMLKQQQIS--SWQEVDASVIRWILSQSHKQGLG 70 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 +S+ L ++ + YL K + + L ++ K LP+ ++ +Q L++ Sbjct: 71 AKSIGVRLVALRQWFAYLVKNEQLQANPALGIKAPKVGRHLPKNVDAEQVAQLLN----- 125 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + TK ++ R+ A++ L+Y GLR+SE L + +R+ GKG+K RIVP+ Sbjct: 126 -TEATKPLEIRDLAMMELMYSSGLRLSELQGLDLDRMDLSTREVRLLGKGNKERIVPIGS 184 Query: 205 SVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 +AI + ++ F+ N +F RG L+ Q + + R GL H Sbjct: 185 KALEAIHRWLEVRMRFNPQDN---AVFLNNRGGRLSHRSIQLIMEKWGRKQGLETHLHPH 241 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323 LRHSFATH+L GDLR++Q +LGH L+TTQIYT+++ ++ + ++YD HP + Sbjct: 242 KLRHSFATHMLEGSGDLRAVQELLGHSSLATTQIYTHLDFQH----LAKVYDAAHPRARK 297 Query: 324 K 324 K Sbjct: 298 K 298 >gi|329733650|gb|EGG69978.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus 21193] Length = 298 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 98/319 (30%), Positives = 164/319 (51%), Gaps = 42/319 (13%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L++ER S+ TL+SY+ D QF FL +E + + T Y + R ++S + Sbjct: 8 FLNTLKVERNFSEHTLKSYQDDLIQFNQFLE---QEHLELNT---FEYRDARNYLSYLYS 61 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSLPRALNEKQALT 136 + S+ R +S +++F +Y +T + NI+N + + KK LP+ E++ Sbjct: 62 NHLKRTSVSRKISTLRTFYEYW----MTLDENIINPFVQLVHPKKEKYLPQFFYEEEM-- 115 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 VL T E + R+ IL LLY G+R+SE +++ Q+I + + + GKG K Sbjct: 116 ---EVLFKTVEEDTSKNLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSK 172 Query: 197 IRIVPLLPSVRKAILEYYDL------CPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQ 249 R VP R++I Y + C D L ++G+ + GV RY+ Sbjct: 173 ERFVPFGAYCRQSIENYLEHFKPIQSCNHDF-------LIVNMKGEAITERGV--RYVLN 223 Query: 250 --LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 ++R G+ H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++ Sbjct: 224 DIVKRTAGVS-EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ-- 280 Query: 308 DWMMEIYDQTHPSITQKDK 326 + ++Y HP ++++ Sbjct: 281 --LRKVYLNAHPRAKKENE 297 >gi|323464636|gb|ADX76789.1| tyrosine recombinase XerC [Staphylococcus pseudintermedius ED99] Length = 296 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 95/306 (31%), Positives = 160/306 (52%), Gaps = 24/306 (7%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 ++ +L L+ ER S TL++Y D QF FLA +E++++ + Y + R ++ Sbjct: 5 QEQFLDMLKRERFFSDHTLKAYHDDLVQFNRFLA---QEQLSLTAFK---YIDARNYLQT 58 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 + ++ R +S ++SF + + + + + + KK LP ++ L Sbjct: 59 LYDLGLQRTTVSRKISTLRSFYAFWMTQDDEIVNPFVQLVHPKKERYLPTFFYTEEMEAL 118 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 V+ +H+ R+ IL L Y G+R+SE +SL +++ + +++ GKG K Sbjct: 119 FQTVM-QDAHK----GLRDRVILELFYATGIRVSELVSLKTEDVDLEMCWIKVLGKGGKE 173 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNP-GVFQRYIRQ--LRRY 253 RIVP R++I +Y L F N+Q P L ++G+P+ GV RY+ ++R Sbjct: 174 RIVPFGEFCRQSIEQY--LAEFAPIQNVQHPYLITNLKGQPITERGV--RYVLNDIVKRT 229 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ S H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V ++ + + Sbjct: 230 AGVT-SIHPHKLRHTFATHLLNEGADLRTVQSLLGHVNLSTTGRYTHVTNQQ----LRNV 284 Query: 314 YDQTHP 319 Y Q HP Sbjct: 285 YLQAHP 290 >gi|269215605|ref|ZP_06159459.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122] gi|269131092|gb|EEZ62167.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122] Length = 307 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 87/292 (29%), Positives = 143/292 (48%), Gaps = 15/292 (5%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 RG S T++ Y D F + A + + + +Y +IR+++ ++ R++ Sbjct: 28 RGDSVHTVRGYRNDLLDFGRWAARHGIVPLDV------TYRQIRSYLGEQNQAGYARRTI 81 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 R LS ++ F ++L + + + K S LPR + +++ + H+S E Sbjct: 82 NRRLSSLRGFFRWLNVTGRVSGDPVGVVSGPKLSKGLPRFIPASDMARILN--VHHSSSE 139 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 + D RN AIL LY G RISEA L ++ +R+ GKG K RIVPL Sbjct: 140 PE--DMRNQAILEFLYASGARISEASGLLASDVDFSSRQVRVMGKGSKERIVPLHDLAVS 197 Query: 209 AILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 ++ Y + L + P F RG+ ++ ++ ++ G+ + T H +RH Sbjct: 198 SMRAYAEHARPQLQGSGSCPRFFVSSRGRAMSTDALRKMFKRTLASAGVDGTYTPHDMRH 257 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 +FAT LL G DLRS+Q +LGH LSTTQIYT+V+S+ + ++ HP Sbjct: 258 TFATDLLDGGADLRSVQEMLGHASLSTTQIYTHVSSER----LRSVHHAAHP 305 >gi|145631442|ref|ZP_01787212.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae R3021] gi|144982979|gb|EDJ90488.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae R3021] Length = 297 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 89/295 (30%), Positives = 152/295 (51%), Gaps = 17/295 (5%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 IE+GLS+ T+QSY D +L + ++++T L +++ F+ +R + Sbjct: 16 IEKGLSENTVQSYRLDLTALCDWL---DKNDLSLET---LDAVDLQGFLGERLEKGYKAT 69 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R LS ++ +YL + K + + + K + LP+ L E+Q + LL+T Sbjct: 70 STARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQV-----SDLLNTP 124 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 ++ R+ A+L LLY GLR++E +SLT +N+ Q +R+ GKG+K RIVP+ Sbjct: 125 DVDVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184 Query: 207 RKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHT 264 + ++ P LN +F R + + F ++ + + H Sbjct: 185 AYWVRQFMLYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADALSPHV 244 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LRH+FATHL+++G DLR +Q +LGH LSTTQIYT+V + + ++++ HP Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER----LKRLHERFHP 295 >gi|238783654|ref|ZP_04627674.1| Tyrosine recombinase xerD [Yersinia bercovieri ATCC 43970] gi|238715367|gb|EEQ07359.1| Tyrosine recombinase xerD [Yersinia bercovieri ATCC 43970] Length = 299 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 92/303 (30%), Positives = 154/303 (50%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ER L++ TL SY D +L + + + + E+++F+++R Sbjct: 10 EQFLDALWLERNLAENTLASYRLDLHALTGWLDHHGSDLLRAGS------QELQSFLAER 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K+ + + + K LP+ L+E Q TL+ Sbjct: 64 IEGGYKATSSARLLSAMRRLFQYLYREKLRDDDPTAILSSPKLPQRLPKDLSEAQVDTLL 123 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 ++ + ++ R+ A+L +LY GLR+SE + LT ++ Q +R+ GKG+K R Sbjct: 124 NSPNVDIP-----LELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKER 178 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL I Y D P+ +N LF R + + F I+ G+ Sbjct: 179 LVPLGEEAVYWIENYMDHGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGID 238 Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Q Sbjct: 239 SERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQQ 294 Query: 317 THP 319 HP Sbjct: 295 HHP 297 >gi|319944411|ref|ZP_08018685.1| tyrosine recombinase XerD [Lautropia mirabilis ATCC 51599] gi|319742372|gb|EFV94785.1| tyrosine recombinase XerD [Lautropia mirabilis ATCC 51599] Length = 342 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 97/302 (32%), Positives = 149/302 (49%), Gaps = 15/302 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q++ L +E GLSK TLQ+Y D Q +LA T + + S ++ A+++ Sbjct: 53 QSFSDALWLEDGLSKNTLQAYRRDLVQLARWLAPSTRGV----ALAEASEADLLAYLADA 108 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R L+ IK F ++L + + L +R +++ P L+E Q V Sbjct: 109 HGHG-KPSSANRRLTVIKRFYRHLLREGRRQDDPTLRIRAMRQPARFPATLSEAQ----V 163 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + +L ET + R+ A+L +LY GLR+SE + L + S +RI GKG K R Sbjct: 164 EALLAAPDVETA-LGLRDRAMLEVLYATGLRVSELVGLKLSEVSMVDSLVRIVGKGSKER 222 Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL R ++ Y + P L +F R + +F IR+ G+ Sbjct: 223 LVPLGEEARAWLVRYLQEARPRLLGARQAEAVFVTQRATGMTRQMFWVLIRRHALRAGIE 282 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V + ++ Q Sbjct: 283 AQLSPHTLRHAFATHLLNHGADLRVVQVLLGHADISTTQIYTHVARAR----LKALHAQH 338 Query: 318 HP 319 HP Sbjct: 339 HP 340 >gi|283769465|ref|ZP_06342361.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa W1219] gi|283103733|gb|EFC05119.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa W1219] Length = 297 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 99/305 (32%), Positives = 157/305 (51%), Gaps = 24/305 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA---FYTEEKITIQTIRQLSYTEIRAFI 75 Q + +LEI +G S T++SYE D +Q+L +L +K+T+Q ++ F+ Sbjct: 8 QQFHLHLEINQGKSPRTVRSYENDLKQYLAYLKEKHILDSQKVTLQVVQD--------FL 59 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQA 134 S++ T K S+ + I++F + ++ T E N +++ ++K+ + LP L+ ++ Sbjct: 60 SQQSTIK-SSNSVVHMATSIRNFHEDIEFS--TGEENPVSLIQVRKNETYLPSFLSVEEV 116 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 L+++ T + K N IL L+Y CGLRISE SLT + + LRI GKG Sbjct: 117 KQLLNSF---TRDDPK--QELNRTILELIYACGLRISELCSLTVAQVQLETGILRILGKG 171 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 +K RIVP+ V K + Y +L N + F G + Q ++Q Sbjct: 172 NKERIVPIPNQVVKDLDYYLNLIRPIWNQHKTNTFFINHLGNRITARSIQLLLKQKAMEC 231 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G T H+LRH++ATHLL G DLR IQ +LGH + TT+IYT+V ++ + E Y Sbjct: 232 GFQKDITPHSLRHTYATHLLQAGADLRIIQELLGHSNIKTTEIYTHVQNRQ----LFEAY 287 Query: 315 DQTHP 319 HP Sbjct: 288 QNFHP 292 >gi|188575133|ref|YP_001912062.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv. oryzae PXO99A] gi|188519585|gb|ACD57530.1| tyrosine recombinase XerC [Xanthomonas oryzae pv. oryzae PXO99A] Length = 305 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 90/310 (29%), Positives = 150/310 (48%), Gaps = 19/310 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-----RQLSYTEIRAF 74 +L L++ER +S TL +Y D + + E QT QL +R F Sbjct: 6 EFLTYLQVERQVSAHTLDAYRRDLAALVAWTGERNAEDGAQQTATPVDSAQLDSAHLRQF 65 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 ++ + + +SL+R LS +S+ +L K S +R K LP+ L+ +A Sbjct: 66 VAAEHRRGLSPKSLQRRLSACRSYYAWLLKHGRIAASPAAALRAPKAQRKLPQVLDADEA 125 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 + LV+ + R+ A+L L Y GLR+SE +L +++ D + + GKG Sbjct: 126 VRLVEVP------TDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVMVLGKG 179 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 K R+VP+ A+ ++ D + +F G G ++ Q I+QL Sbjct: 180 SKQRLVPVGSHAIAALRQWRR----DSGASADAHVFPGRTGGAISQRAVQIRIKQLAVRQ 235 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ H LRHSFA+H+L + GDLR +Q +LGH ++TTQIYT+++ ++ + ++Y Sbjct: 236 GMFKDVHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQH----LAKVY 291 Query: 315 DQTHPSITQK 324 D HP +K Sbjct: 292 DAAHPRARRK 301 >gi|308187997|ref|YP_003932128.1| Tyrosine recombinase xerD [Pantoea vagans C9-1] gi|308058507|gb|ADO10679.1| Tyrosine recombinase xerD [Pantoea vagans C9-1] Length = 297 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 94/303 (31%), Positives = 153/303 (50%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L IER L++ TL SY D + +L T ++T+ ++ L +++ F+++R Sbjct: 8 EQFLDALWIERNLAQNTLSSYRQDLQTLTGWL---THHQLTLLSVTPL---DLQQFLAER 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K+ + + K LP+ L+E Q Sbjct: 62 LEGGYKATSSARLLSAMRRLFQYLYREKLRPDDPSALLSAPKLPQRLPKDLSEAQV---- 117 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL ++ R+ A+L +LY GLR+SE LT +I Q +R+ GKGDK R Sbjct: 118 -ERLLQAPDTNIPLELRDKAMLEVLYATGLRVSELTGLTLSDISLRQGVVRVIGKGDKER 176 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL + +Y + P+ LN +F R + + F I+ G+ Sbjct: 177 LVPLGEEAVYWLEQYMEHGRPWLLNGQTLDVMFPSNRAQQMTRQTFWHRIKHYATLAGID 236 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H +RH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Q Sbjct: 237 SEKLSPHVMRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQ 292 Query: 317 THP 319 HP Sbjct: 293 HHP 295 >gi|15642416|ref|NP_232049.1| site-specific tyrosine recombinase XerD [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587637|ref|ZP_01677401.1| tyrosine recombinase XerD [Vibrio cholerae 2740-80] gi|121728363|ref|ZP_01681392.1| tyrosine recombinase XerD [Vibrio cholerae V52] gi|147673043|ref|YP_001217919.1| site-specific tyrosine recombinase XerD [Vibrio cholerae O395] gi|153802800|ref|ZP_01957386.1| tyrosine recombinase XerD [Vibrio cholerae MZO-3] gi|153818418|ref|ZP_01971085.1| tyrosine recombinase XerD [Vibrio cholerae NCTC 8457] gi|153822226|ref|ZP_01974893.1| tyrosine recombinase XerD [Vibrio cholerae B33] gi|153826869|ref|ZP_01979536.1| tyrosine recombinase XerD [Vibrio cholerae MZO-2] gi|227082540|ref|YP_002811091.1| integrase/recombinase XerD [Vibrio cholerae M66-2] gi|229507521|ref|ZP_04397026.1| tyrosine recombinase XerD [Vibrio cholerae BX 330286] gi|229512283|ref|ZP_04401762.1| tyrosine recombinase XerD [Vibrio cholerae B33] gi|229514045|ref|ZP_04403507.1| tyrosine recombinase XerD [Vibrio cholerae TMA 21] gi|229519419|ref|ZP_04408862.1| tyrosine recombinase XerD [Vibrio cholerae RC9] gi|229521248|ref|ZP_04410668.1| tyrosine recombinase XerD [Vibrio cholerae TM 11079-80] gi|229528596|ref|ZP_04417986.1| tyrosine recombinase XerD [Vibrio cholerae 12129(1)] gi|229607027|ref|YP_002877675.1| site-specific tyrosine recombinase XerD [Vibrio cholerae MJ-1236] gi|254226633|ref|ZP_04920213.1| tyrosine recombinase XerD [Vibrio cholerae V51] gi|254291785|ref|ZP_04962570.1| tyrosine recombinase XerD [Vibrio cholerae AM-19226] gi|254849542|ref|ZP_05238892.1| tyrosine recombinase XerD [Vibrio cholerae MO10] gi|255746910|ref|ZP_05420855.1| site-specific recombinase XerD [Vibrio cholera CIRS 101] gi|262161547|ref|ZP_06030657.1| site-specific recombinase XerD [Vibrio cholerae INDRE 91/1] gi|262168398|ref|ZP_06036095.1| site-specific recombinase XerD [Vibrio cholerae RC27] gi|262190652|ref|ZP_06048886.1| site-specific recombinase XerD [Vibrio cholerae CT 5369-93] gi|297581043|ref|ZP_06942968.1| tyrosine recombinase xerD [Vibrio cholerae RC385] gi|298500223|ref|ZP_07010028.1| tyrosine recombinase XerD [Vibrio cholerae MAK 757] gi|34223076|sp|Q9KPE9|XERD_VIBCH RecName: Full=Tyrosine recombinase xerD gi|9656993|gb|AAF95562.1| integrase/recombinase XerD [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548147|gb|EAX58220.1| tyrosine recombinase XerD [Vibrio cholerae 2740-80] gi|121629354|gb|EAX61785.1| tyrosine recombinase XerD [Vibrio cholerae V52] gi|124121665|gb|EAY40408.1| tyrosine recombinase XerD [Vibrio cholerae MZO-3] gi|125620852|gb|EAZ49206.1| tyrosine recombinase XerD [Vibrio cholerae V51] gi|126511051|gb|EAZ73645.1| tyrosine recombinase XerD [Vibrio cholerae NCTC 8457] gi|126520236|gb|EAZ77459.1| tyrosine recombinase XerD [Vibrio cholerae B33] gi|146314926|gb|ABQ19465.1| tyrosine recombinase XerD [Vibrio cholerae O395] gi|149739285|gb|EDM53541.1| tyrosine recombinase XerD [Vibrio cholerae MZO-2] gi|150422297|gb|EDN14259.1| tyrosine recombinase XerD [Vibrio cholerae AM-19226] gi|227010428|gb|ACP06640.1| integrase/recombinase XerD [Vibrio cholerae M66-2] gi|227014311|gb|ACP10521.1| integrase/recombinase XerD [Vibrio cholerae O395] gi|229332370|gb|EEN97856.1| tyrosine recombinase XerD [Vibrio cholerae 12129(1)] gi|229341780|gb|EEO06782.1| tyrosine recombinase XerD [Vibrio cholerae TM 11079-80] gi|229344108|gb|EEO09083.1| tyrosine recombinase XerD [Vibrio cholerae RC9] gi|229349226|gb|EEO14183.1| tyrosine recombinase XerD [Vibrio cholerae TMA 21] gi|229352248|gb|EEO17189.1| tyrosine recombinase XerD [Vibrio cholerae B33] gi|229355026|gb|EEO19947.1| tyrosine recombinase XerD [Vibrio cholerae BX 330286] gi|229369682|gb|ACQ60105.1| tyrosine recombinase XerD [Vibrio cholerae MJ-1236] gi|254845247|gb|EET23661.1| tyrosine recombinase XerD [Vibrio cholerae MO10] gi|255735312|gb|EET90712.1| site-specific recombinase XerD [Vibrio cholera CIRS 101] gi|262023290|gb|EEY41994.1| site-specific recombinase XerD [Vibrio cholerae RC27] gi|262028858|gb|EEY47512.1| site-specific recombinase XerD [Vibrio cholerae INDRE 91/1] gi|262033466|gb|EEY51970.1| site-specific recombinase XerD [Vibrio cholerae CT 5369-93] gi|297534869|gb|EFH73705.1| tyrosine recombinase xerD [Vibrio cholerae RC385] gi|297540916|gb|EFH76970.1| tyrosine recombinase XerD [Vibrio cholerae MAK 757] gi|327484912|gb|AEA79319.1| Tyrosine recombinase XerD [Vibrio cholerae LMA3894-4] Length = 302 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 94/304 (30%), Positives = 156/304 (51%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + ERGL++ T+ SY D + L ++A + + + I E ++++S+ Sbjct: 13 EQFLDTMWFERGLAENTVASYRNDLSKLLEWMA---QNQYRLDFISFAGLQEYQSWLSE- 68 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q S R LS I+ +YL + K+ + + + K LP+ L+E Q Sbjct: 69 --QNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQV---- 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL ++ R+ A+L LLY GLR++E +SLT +N+ Q +R+ GKG K R Sbjct: 123 -EALLSAPDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKER 181 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VP+ + + I E + L L Q +F RG+ + F I+ G+ Sbjct: 182 LVPMGENAIEWI-ETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGI 240 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + H LRH+FATHLL+ G DLR +Q +LGH LSTTQIYT+V ++ + ++++ Sbjct: 241 DVEKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHN 296 Query: 316 QTHP 319 + HP Sbjct: 297 EHHP 300 >gi|68248917|ref|YP_248029.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae 86-028NP] gi|68057116|gb|AAX87369.1| Site-specific recombinase XerD [Haemophilus influenzae 86-028NP] Length = 297 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 89/295 (30%), Positives = 152/295 (51%), Gaps = 17/295 (5%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 IE+GLS+ T+QSY D +L + ++++T L +++ F+ +R + Sbjct: 16 IEKGLSENTVQSYRLDLTALCDWL---DKNDLSLET---LDAVDLQGFLGERLEKGYKAT 69 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R LS ++ +YL + K + + + K + LP+ L E+Q + LL+T Sbjct: 70 STARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQV-----SDLLNTP 124 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 ++ R+ A+L LLY GLR++E +SLT +N+ Q +R+ GKG+K RIVP+ Sbjct: 125 DVKVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184 Query: 207 RKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHT 264 + ++ P LN +F R + + F ++ + + H Sbjct: 185 AYWVRQFMLYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADALSPHV 244 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LRH+FATHL+++G DLR +Q +LGH LSTTQIYT+V + + ++++ HP Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER----LKRLHERFHP 295 >gi|126642664|ref|YP_001085648.1| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC 17978] Length = 233 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 84/246 (34%), Positives = 137/246 (55%), Gaps = 24/246 (9%) Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 ++R L+ I+ F+K+ ++ K E N + LK+ PR L + +V+ +L Sbjct: 1 MQRHLTSIRQFMKWAEQGKYL-EINPTDDFKLKRQ---PRPLPGMIDIEMVNQILDQPMP 56 Query: 148 ETK-----WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202 E W+ R+ A+L LLY GLR++E LT ++I ++ +RI GKG+K RIVP Sbjct: 57 EKPVDQQLWL--RDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPF 114 Query: 203 LPSVRKAILEY---YDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 ++++L + Y++ FD N ++ F RG L P ++ ++ + G+ Sbjct: 115 GKKAKESLLNWLKIYNIWKGHFDQNASV----FISQRGGALTPRQIEKRVKLQAQRAGVN 170 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + H LRH FA+H+LS+ GDLRS+Q +LGH LSTTQIYT+++ D + ++YDQ Sbjct: 171 VDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDF----DHLAQVYDQA 226 Query: 318 HPSITQ 323 HP T+ Sbjct: 227 HPRATK 232 >gi|88802458|ref|ZP_01117985.1| putative site-specific recombinase [Polaribacter irgensii 23-P] gi|88781316|gb|EAR12494.1| putative site-specific recombinase [Polaribacter irgensii 23-P] Length = 301 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 92/307 (29%), Positives = 155/307 (50%), Gaps = 18/307 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKR 78 ++L+ L +E+G SK T+ +Y D F F A + +E IT+ ++Y ++R +I Sbjct: 10 SFLEYLLLEKGYSKHTIIAYRKDLIDFSSFCALHFDQESITV-----VAYAQVRRWIVSL 64 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 I + ++ R +S +KSF K+L+K + + ++LK + + K+ ++ Sbjct: 65 VAADISNSTINRKVSSLKSFYKFLQKSSQIENNPLSKHKSLKVAKRVQVPFTAKEINAVL 124 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 +N+ + E RN ++ LLY G+R +E +S+ ++ T+++ GK +K R Sbjct: 125 ENMAGGQNFEA----CRNRLLVELLYSTGMRRAELISIQEVDVNCADQTIKVVGKRNKER 180 Query: 199 IVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 VP+L SV + I EY L D L +G L + R I + Sbjct: 181 YVPILSSVLQTIKEYQGLKATIDGGSGFFLITSKG---NKLYETLVYRIINSYFSKISSK 237 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + + H LRHSFATHLL+ G DL S++ +LGH L++TQ+YT+ N D + IY Q Sbjct: 238 VKKSPHILRHSFATHLLNEGADLNSVKELLGHSSLASTQVYTH----NSLDAIKNIYKQA 293 Query: 318 HPSITQK 324 HP +K Sbjct: 294 HPRSNKK 300 >gi|89895059|ref|YP_518546.1| hypothetical protein DSY2313 [Desulfitobacterium hafniense Y51] gi|89334507|dbj|BAE84102.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 322 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 93/320 (29%), Positives = 152/320 (47%), Gaps = 29/320 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ERGLS T SYE D R+F FL + I + ++ F+ + Sbjct: 10 KKYLSYLNVERGLSPNTRNSYERDLRKFTAFLQQRGKNIIACEG------NDLFLFLLQE 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + Q R+L R L+ ++ F +L ++ + + K LP L+E L+ Sbjct: 64 KNQGRSARTLARYLATLRGFFAFLLGEEMREDDPTEYLSTPKLEQHLPHVLSEGSISKLM 123 Query: 139 DNVL------------------LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 + + K + RN A++ +LYGCGLR+SE + L + Sbjct: 124 GEGGDRDKEGPKPGKSSKKAGDSDSEGKDKGLLMRNMAMIEVLYGCGLRVSELVGLKVSD 183 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLN 239 I+ + TLR +GKG K RIVP+ + + Y + L + LF RG L Sbjct: 184 IIFETRTLRCRGKGSKERIVPIGEYALEVLQNYLEHDRERLRGKHKTEVLFLNSRGTALT 243 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 +++ + G+ + H RHSFATHLL +G DLRS+Q +LGH ++TTQIYT Sbjct: 244 RQGIWDILKKWAQTHGVQENIYPHKFRHSFATHLLDHGADLRSVQEMLGHADIATTQIYT 303 Query: 300 NVNSKNGGDWMMEIYDQTHP 319 +++ + ++E++ + HP Sbjct: 304 HLSRQR----LLEVFRKAHP 319 >gi|289550957|ref|YP_003471861.1| Site-specific tyrosine recombinase [Staphylococcus lugdunensis HKU09-01] gi|315658459|ref|ZP_07911331.1| tyrosine recombinase XerC [Staphylococcus lugdunensis M23590] gi|289180489|gb|ADC87734.1| Site-specific tyrosine recombinase [Staphylococcus lugdunensis HKU09-01] gi|315496788|gb|EFU85111.1| tyrosine recombinase XerC [Staphylococcus lugdunensis M23590] Length = 297 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 97/306 (31%), Positives = 159/306 (51%), Gaps = 24/306 (7%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 ++ +L L++ER S T++SY D QF FLA +E +T+ T Y + R ++S Sbjct: 5 QKAFLYMLKVERNFSDHTIKSYHDDLMQFNEFLA---QEMLTLST---FEYKDARNYLSY 58 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 + + ++ R +S ++SF +Y + T + + + + KK LP+ E + L Sbjct: 59 LYNKNLKRTTVSRKISTLRSFYEYWMTQDETVINPFVQLVHPKKEQYLPQFFYEAEMDAL 118 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 + VL H+ K R+ IL LLY G+R+SE + + +I +++ GKG K Sbjct: 119 FETVL----HDAKK-GLRDRVILELLYSTGMRVSELVHIKKMDIDLTLPGVKVLGKGSKE 173 Query: 198 RIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNP-GVFQRYIRQ--LRRY 253 R +P +++I +Y L F + N L + G+P+ GV RY+ ++R Sbjct: 174 RFLPFGEFCKQSIEQY--LLEFGPVKQNDHPFLLVNMNGQPITERGV--RYVLNDIVKRT 229 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+ D + ++ Sbjct: 230 AGVT-DIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSK----DQLRKV 284 Query: 314 YDQTHP 319 Y HP Sbjct: 285 YLNAHP 290 >gi|23099003|ref|NP_692469.1| site-specific tyrosine recombinase XerC [Oceanobacillus iheyensis HTE831] gi|34222801|sp|Q7ZAM5|XERC_OCEIH RecName: Full=Tyrosine recombinase xerC gi|22777231|dbj|BAC13504.1| integrase:recombinase [Oceanobacillus iheyensis HTE831] Length = 305 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 91/303 (30%), Positives = 154/303 (50%), Gaps = 19/303 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +++ L+IE+ S T++ Y D IF F E ++ I ++Y ++R F++ Sbjct: 11 FVEYLQIEKNASPYTVKYYRNDLE---IFADFLRSEGLS--HIANVTYKDVRIFLTSLYE 65 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q++ RS+ R +S ++SF ++L++ + + + K S +P L +++ + Sbjct: 66 QELSRRSVSRKISTLRSFYRFLEREGYVEGNPFVQLHLPKTSKPVPGFLYQEEL-----D 120 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 L + T + R+ A+L +LYG G+R+SE +L Q+I T+ ++GKG K R V Sbjct: 121 KLFEVNDITTPLGQRDQALLEMLYGTGIRVSECQNLRLQDIDFAIGTIFVRGKGRKERYV 180 Query: 201 PLLPSVRKAILEYYDLCPFDL----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 P A+ Y L N + + +F RG L + + ++ L Sbjct: 181 PFGSFAEIALETYLQEGRTKLLEKSNSDTEF-IFLNSRGGHLTNRGIRTILNKIVERASL 239 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL+ G DLRS+Q +LGH LS+TQIYT+V D + E Y + Sbjct: 240 TVHVHPHKLRHTFATHLLNEGADLRSVQELLGHESLSSTQIYTHVTK----DHLREAYMK 295 Query: 317 THP 319 +HP Sbjct: 296 SHP 298 >gi|17544771|ref|NP_518173.1| site-specific tyrosine recombinase XerC [Ralstonia solanacearum GMI1000] gi|34222938|sp|Q8Y3C8|XERC1_RALSO RecName: Full=Tyrosine recombinase xerC 1 gi|17427060|emb|CAD13580.1| probable tyrosine recombinase xerc 1 protein [Ralstonia solanacearum GMI1000] Length = 329 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 97/326 (29%), Positives = 159/326 (48%), Gaps = 41/326 (12%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L+ ER LS+ TL SY R+ + I +R L IR +++ Sbjct: 23 YLDALKFERKLSQHTLASY---ARELAVLQQLGARFAAGIDLMR-LQPHHIRRMMAQLHG 78 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVD 139 + RS+ R+LS + + ++L R +N ++ +R K LP+AL+ +QA+ L++ Sbjct: 79 GGLSGRSIARALSAWRGWYQWLALRDAAVTANPVDGIRAPKSPKRLPKALSVEQAVALME 138 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNIMDDQST---------L 188 + + + + R+ A+ L Y CGLR+SE L L D S + Sbjct: 139 QL---PGDDPEAV--RDRAVNELFYSCGLRLSELVGLDLRHAQAGDYASASWLDLEAREV 193 Query: 189 RIQGKGDKIRIVPL----------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238 + GKG+K R VP+ +VR + + D P D + LF RGK L Sbjct: 194 TVLGKGNKRRTVPVGSKAAEALAAWLAVRPQLAQP-DAAPEDAHA-----LFLSARGKRL 247 Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 Q +++ G+P H LRHSFATH+L + GDLR++Q +LGH +++TQ+Y Sbjct: 248 AQRQIQTRMKRNAIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVY 307 Query: 299 TNVNSKNGGDWMMEIYDQTHPSITQK 324 T+++ ++ + +IYDQ HP +K Sbjct: 308 TSLDFQH----LAKIYDQAHPRAKKK 329 >gi|46580064|ref|YP_010872.1| phage integrase family site specific recombinase [Desulfovibrio vulgaris str. Hildenborough] gi|46449480|gb|AAS96131.1| site-specific recombinase, phage integrase family [Desulfovibrio vulgaris str. Hildenborough] Length = 294 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 91/302 (30%), Positives = 150/302 (49%), Gaps = 22/302 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL++L +ERGL++ TL +Y D LI L + EE+ + + ++ + + R Sbjct: 4 WLEHLLVERGLAENTLAAYSAD----LIELQVFLEERGCL--LAEVDEQTLFMHVVDLRR 57 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + R+L R L+ ++ F + L + N K + +LP L + T++ Sbjct: 58 RGMAGRTLARHLATLRGFFAFAVGEGELEADPALFLENPKLARNLPDVLTRDEMATILAR 117 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 L + + R+ +L L+Y GLR+SE +L P + +R+ GKG K RIV Sbjct: 118 PDL-----SDRLGFRDRTMLELMYAAGLRVSELCALRPLDFDAQAGVVRVFGKGAKERIV 172 Query: 201 PLLPSVRKAILEYY--DLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 P+ V A++ Y D P F ++ +F GK L+ + +++ G+ Sbjct: 173 PV-HHVSCALVTAYLRDWRPAFS---PVEPAMFLNRSGKGLSRQAVWKVVKRHVAEAGIH 228 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + HT RHSFATHLL G DLRS+Q +LGH +S T+IYT+V + D + I++ Sbjct: 229 KDISPHTFRHSFATHLLEGGADLRSVQLLLGHADISATEIYTHVQA----DRLRRIHNAH 284 Query: 318 HP 319 HP Sbjct: 285 HP 286 >gi|332678853|gb|AEE87982.1| Tyrosine recombinase xerD [Francisella cf. novicida Fx1] Length = 292 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 93/300 (31%), Positives = 146/300 (48%), Gaps = 18/300 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L NL +E GLS+ ++ SY D L FL Y + I L + ++ AFIS R Sbjct: 8 FLDNLWLEHGLSQNSISSYRTD----LKFLQNYFAKTDLIS----LDFEQLYAFISYRSK 59 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 RS R +S ++ F +L T + + K + LP+ + E Sbjct: 60 NGYSSRSNARMISTLRKFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDV-----E 114 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LL T+ + R+ A+L L+Y GLR+SE + L +I + +++ GKG K RIV Sbjct: 115 RLLQAPDMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIV 174 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ + + +Y+ L+ N + +F K + F I+ G+ Sbjct: 175 PIGEYALEYLQKYFAEARTSLSKNFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTD 234 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLRS+Q +LGH +STT IYT+++ + IY + HP Sbjct: 235 ISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNR----LQVIYQKHHP 290 >gi|319775822|ref|YP_004138310.1| Site-specific recombinase XerD [Haemophilus influenzae F3047] gi|329123666|ref|ZP_08252226.1| tyrosine recombinase XerD [Haemophilus aegyptius ATCC 11116] gi|317450413|emb|CBY86629.1| Site-specific recombinase XerD [Haemophilus influenzae F3047] gi|327469865|gb|EGF15330.1| tyrosine recombinase XerD [Haemophilus aegyptius ATCC 11116] Length = 297 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 89/295 (30%), Positives = 152/295 (51%), Gaps = 17/295 (5%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 IE+GLS+ T+QSY D +L + ++++T L +++ F+ +R + Sbjct: 16 IEKGLSENTVQSYRLDLTALCDWL---DKNGLSLET---LDAVDLQGFLGERLEKGYKAT 69 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R LS ++ +YL + K + + + K + LP+ L E+Q + LL+T Sbjct: 70 STARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQV-----SDLLNTP 124 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 ++ R+ A+L LLY GLR++E +SLT +N+ Q +R+ GKG+K RIVP+ Sbjct: 125 DVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184 Query: 207 RKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHT 264 + ++ P LN +F R + + F ++ + + H Sbjct: 185 AYWVRQFMLYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDAEALSPHV 244 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LRH+FATHL+++G DLR +Q +LGH LSTTQIYT+V + + ++++ HP Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER----LKRLHERFHP 295 >gi|325271628|ref|ZP_08138130.1| site-specific tyrosine recombinase XerC [Pseudomonas sp. TJI-51] gi|324103232|gb|EGC00577.1| site-specific tyrosine recombinase XerC [Pseudomonas sp. TJI-51] Length = 299 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 92/310 (29%), Positives = 156/310 (50%), Gaps = 29/310 (9%) Query: 17 ERQ--NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 ERQ + +L ER +S+ TL Y D + + A+ E+ I + L ++R Sbjct: 2 ERQLEAYCAHLRSERQVSEHTLLGYRRDLDKVI---AYCKEQGIA--DWQALQIQQLRQL 56 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 +++ RSL R LS ++ +YL + + + K LP+ L+ +A Sbjct: 57 VARLHHHGQASRSLARLLSAVRGLYRYLNREGLCQHDPAAGLSAPKGERKLPKVLDTDRA 116 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 L L+D + + +I R+ A+L L Y GLR+SE +L ++ +++ GKG Sbjct: 117 LQLLDGGV-----DDDFIARRDQAMLELFYSSGLRLSELSNLDLDHLDLAAGLVQVLGKG 171 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI----RGKPLNPGVFQRYIRQL 250 K R++P+ R+A+ E+Y L I P R + +G ++P Q+ ++ + Sbjct: 172 GKARVLPVGRKAREALKEWYRL------RGIGNPRDRAVFITRQGNRISPRTVQQRVKAV 225 Query: 251 -RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 R LG L H LRHSFA+H+L + DLR++Q +LGH +STTQIYT+++ ++ Sbjct: 226 GERELGQHLHP--HMLRHSFASHVLESSQDLRAVQEMLGHADISTTQIYTHLDFQH---- 279 Query: 310 MMEIYDQTHP 319 + +YD HP Sbjct: 280 LAAVYDSAHP 289 >gi|83595067|ref|YP_428819.1| tyrosine recombinase XerD subunit [Rhodospirillum rubrum ATCC 11170] gi|83577981|gb|ABC24532.1| tyrosine recombinase XerD subunit [Rhodospirillum rubrum ATCC 11170] Length = 328 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 94/340 (27%), Positives = 155/340 (45%), Gaps = 34/340 (10%) Query: 3 GNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62 G+ P L + + +L+ + ERG ++ T+++Y D R + FL + +T+ Sbjct: 7 GDTAPSSRGPSLAVQAEAFLEMMLAERGAARRTVEAYGRDLRDYAAFLREKGLDGLTV-- 64 Query: 63 IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122 S +RA+++ + RS R LS ++ F +L + + + + + Sbjct: 65 ----SRPTLRAYLATMAAAGLAPRSQARKLSCLRQFHGFLVSEGRRPDDPTIGLDSPRLG 120 Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 LPR L+E + VD +L+ R +L LLY GLR+SE +SL Sbjct: 121 RPLPRVLSEAE----VDALLVAAEAGEGARGLRARVLLELLYSTGLRVSELVSLPLSVAN 176 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP----- 237 D T+ ++GKGDK R+VPL R A+ ++ P LP R + Sbjct: 177 RDPETILVRGKGDKERLVPLGLPARAALRDWLIARP------TTLPASGAARRRADRFLF 230 Query: 238 --------LNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288 L F + + +L G+ P + H LRH FA+H+L++G DLR +Q++LG Sbjct: 231 PSSAAEGHLTRDGFAKMLGELALRAGIDPARVSPHVLRHCFASHMLAHGADLRGVQTLLG 290 Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328 H ++TTQIYT+V D + + HP K + N Sbjct: 291 HADIATTQIYTHVLD----DRLTTLVRTAHPLARLKGEGN 326 >gi|166710518|ref|ZP_02241725.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv. oryzicola BLS256] Length = 345 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 92/314 (29%), Positives = 151/314 (48%), Gaps = 27/314 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-----RQLSYTEIRAF 74 +L L++ER +S TL +Y D + + E QT QL +R F Sbjct: 46 EFLTYLQVERQVSAHTLDAYRRDLAALVAWTGERNTEDGAQQTATPVDSAQLDSAHLRQF 105 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 ++ + + +SL+R LS +S+ +L K S +R K LP+ L+ +A Sbjct: 106 VAAEHRRGLSPKSLQRRLSACRSYYAWLLKHGRIAASPAAALRAPKAPRKLPQVLDADEA 165 Query: 135 LTLVDNVLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 + LV+ DA R+ A+L L Y GLR+SE +L +++ D + + Sbjct: 166 VRLVEVP----------TDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVMV 215 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 GKG K R+VP+ A+ ++ D + +F G G ++ Q I+QL Sbjct: 216 LGKGSKQRLVPVGSHAIAALRQWRR----DSGASADAHVFPGRAGGAISQRAVQIRIKQL 271 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ H LRHSFA+H+L + GDLR +Q +LGH ++TTQIYT+++ ++ + Sbjct: 272 AVRQGMFKDVHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQH----L 327 Query: 311 MEIYDQTHPSITQK 324 ++YD HP +K Sbjct: 328 AKVYDAAHPRARRK 341 >gi|229846398|ref|ZP_04466506.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae 7P49H1] gi|229810491|gb|EEP46209.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae 7P49H1] Length = 297 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 89/295 (30%), Positives = 152/295 (51%), Gaps = 17/295 (5%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 IE+GLS+ T+QSY D +L + ++++T L +++ F+ +R + Sbjct: 16 IEKGLSENTVQSYRLDLTALCDWL---DKNDLSLET---LDAVDLQGFLGERLEKGYKVT 69 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R LS ++ +YL + K + + + K + LP+ L E+Q + LL+T Sbjct: 70 STARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQV-----SDLLNTP 124 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 ++ R+ A+L LLY GLR++E +SLT +N+ Q +R+ GKG+K RIVP+ Sbjct: 125 DVDVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184 Query: 207 RKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHT 264 + ++ P LN +F R + + F ++ + + H Sbjct: 185 AYWVRQFMLYGRPVLLNRQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADALSPHV 244 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LRH+FATHL+++G DLR +Q +LGH LSTTQIYT+V + + ++++ HP Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER----LKRLHERFHP 295 >gi|222035509|emb|CAP78254.1| Tyrosine recombinase xerC [Escherichia coli LF82] gi|312948364|gb|ADR29191.1| site-specific tyrosine recombinase XerC [Escherichia coli O83:H1 str. NRG 857C] gi|324007468|gb|EGB76687.1| tyrosine recombinase XerC [Escherichia coli MS 57-2] Length = 298 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 93/307 (30%), Positives = 155/307 (50%), Gaps = 17/307 (5%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L + + +L+ L +ER LS +TL +Y+ RQ + F +E +Q+ +Q T +R Sbjct: 3 DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIIHFASEN--GLQSWQQCDVTMVR 57 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F + R + +G SL LS ++SF +L + + + K LP+ ++ Sbjct: 58 NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 L+D + + R+ A+L ++YG GLR+SE + L +++ + + + G Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 KG K R +P+ + I + DL DL + LF GK ++ Q+ + Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 GL H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ + Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285 Query: 313 IYDQTHP 319 +YD THP Sbjct: 286 VYDATHP 292 >gi|327537504|gb|EGF24226.1| site-specific DNA tyrosine recombinase, XerD [Rhodopirellula baltica WH47] Length = 317 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 90/308 (29%), Positives = 152/308 (49%), Gaps = 30/308 (9%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +L L+ E L+ T+ +Y D ++F+ ++ +TI TE+ F++ Sbjct: 30 EFLVYLKRECHLADNTVAAYGRDMKRFVTWMDGRRPADLTI--------TELSDFVASLH 81 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + + S+ R++ I++F KYL+ IT ++ + K +P L+ + + Sbjct: 82 GEGLAPASISRAIVAIRTFFKYLQLEGITVDNPAELLATQKAWQRMPGVLSPNEVEAFLS 141 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 V ++ W R+ A+L +LY G R SE +L +++ D+ TLR GKGDK R+ Sbjct: 142 AV---KKSDSFW--QRDRALLEVLYATGCRASEVCTLRVRDLTLDEKTLRCHGKGDKQRM 196 Query: 200 VPLLPSVRKAILEY--------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 VP+ ++I Y D P ++ +L L RG GK L+ R +++ Sbjct: 197 VPIGGRAIRSIQLYLEESRHILADRNPGQID---ELFLSRG--GKALDRIQLWRLVKRYA 251 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 + G+ + H+LRHSFATHLL+ G DLR +Q +LGH + TTQIYT+V + Sbjct: 252 KRAGISDEISPHSLRHSFATHLLAGGADLRQVQEMLGHASIQTTQIYTHVEHSR----LQ 307 Query: 312 EIYDQTHP 319 ++ HP Sbjct: 308 RVHRDFHP 315 >gi|224476610|ref|YP_002634216.1| putative site-specific recombinase XerD [Staphylococcus carnosus subsp. carnosus TM300] gi|222421217|emb|CAL28031.1| putative site-specific recombinase XerD [Staphylococcus carnosus subsp. carnosus TM300] Length = 299 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 87/305 (28%), Positives = 156/305 (51%), Gaps = 21/305 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE---IRAFI 75 + +L+ ++IE+GLS T+ +Y D ++ +E + ++ I + + + I+ + Sbjct: 10 EEYLKFIQIEKGLSANTIGAYRRDLNKY--------KEYLVLKKINNIDFIDREIIQQCL 61 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 +S+ R +S ++SF ++ + + + + + K LP L+ + L Sbjct: 62 GYLHDDGHSAKSIARFISTVRSFHQFALRERYAAKDPTVLIETPKYERRLPDVLDVEDVL 121 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L L T +K R+ IL LLY G+R++E + + +++ +R+ GKG Sbjct: 122 AL-----LETPDLSKNNGYRDRTILELLYATGMRVTELIHVRVEDVNLIMGFVRVFGKGS 176 Query: 196 KIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 K RI+PL +V + +Y + P L + LF + GKPL+ + I+Q Sbjct: 177 KERIIPLGETVIDYLKKYIETVRPQLLKQTVTDVLFLNLHGKPLSRQGIWKLIKQYGVKA 236 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 + T H+LRHSFATHLL NG DLR++Q +LGH +STTQ+YT+V+ + ++Y Sbjct: 237 NIKKKLTPHSLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMY 292 Query: 315 DQTHP 319 ++ HP Sbjct: 293 NEFHP 297 >gi|307300528|ref|ZP_07580308.1| tyrosine recombinase XerD [Sinorhizobium meliloti BL225C] gi|306904694|gb|EFN35278.1| tyrosine recombinase XerD [Sinorhizobium meliloti BL225C] Length = 311 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 94/313 (30%), Positives = 155/313 (49%), Gaps = 14/313 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ + ERG + TLQSYE D FL + + S ++R+++S Sbjct: 10 EAFLEMMSAERGAAANTLQSYERDLEDARSFL------RSRGTGLTDASADDLRSYLSHL 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q S R LS ++ F K+L + T+ + KK+ +LP+ L+ + L+ Sbjct: 64 AGQGFKASSQARRLSALRQFYKFLYAEGLRTDDPTGILDAPKKARTLPKTLSIEDVTRLI 123 Query: 139 DNVLLHTSHETKWIDA--RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 + + A R A++ LLY G+R+SE +SL + + L I+GKG+K Sbjct: 124 GQAEAEAKSGSDDVMAKLRMHALIELLYATGMRVSELVSLPASVLAQNGRFLIIRGKGNK 183 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 R+VPL + +A+ Y + + + L G G L VF R ++ L G+ Sbjct: 184 ERLVPLSQAAIRAMRAYGEALQEESADSPWLFPSNGKSGH-LPRQVFARDLKSLAARAGI 242 Query: 257 PLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 ++ H LRH+FA+HLL+NG DLR++Q +LGH +STTQIYT+V + + ++ Sbjct: 243 RVAAIWPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEER----LHDLVQ 298 Query: 316 QTHPSITQKDKKN 328 HP Q K++ Sbjct: 299 NHHPLAKQAKKQD 311 >gi|88705495|ref|ZP_01103205.1| site-specific recombinase [Congregibacter litoralis KT71] gi|88700008|gb|EAQ97117.1| site-specific recombinase [Congregibacter litoralis KT71] Length = 312 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 92/313 (29%), Positives = 156/313 (49%), Gaps = 17/313 (5%) Query: 15 LKER-QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 L ER +L+ L R LS T+ +Y+ D F F + ++Q ++ + +R Sbjct: 11 LDERISAFLEYLRSVRRLSPHTVAAYQRDLGSFRAFC-----DAQSLQDCDEVQESHVRQ 65 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 ++++ + + SL+R LS ++++ ++ + L ++ +K LP L Q Sbjct: 66 WLAQGHRRSLAPNSLQRQLSALRAYFEWESSDTGRRRNPALAVQAPRKRRKLPGTLEADQ 125 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 V L E + R+ A+ L Y GLR+ E ++ +I QS + + GK Sbjct: 126 V-----GVYLRADAEDP-LQLRDLAMAELFYSSGLRLGELRAVNLYDIDRGQSLISVTGK 179 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 G K R VP+ + AI Y P ++ + Q LF RG+ ++ Q ++ L Sbjct: 180 GSKTRTVPVGSAAIAAIDAYLPHRPAAVSDDDQEALFLSSRGRRISERSIQSRVQLLAER 239 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 GL H LRHSFA+HLL + GDLR++Q +LGH +STTQIYT+++ ++ + ++ Sbjct: 240 NGLGRDVHPHMLRHSFASHLLESSGDLRAVQELLGHSDISTTQIYTHLDFQH----LAKV 295 Query: 314 YDQTHP-SITQKD 325 YD +HP + QKD Sbjct: 296 YDGSHPRARKQKD 308 >gi|110635391|ref|YP_675599.1| site-specific tyrosine recombinase XerD [Mesorhizobium sp. BNC1] gi|110286375|gb|ABG64434.1| tyrosine recombinase XerD subunit [Chelativorans sp. BNC1] Length = 308 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 89/308 (28%), Positives = 147/308 (47%), Gaps = 17/308 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ + ERG S TL SY D +L + + + S +IR +++ Sbjct: 8 EAFLEMMAAERGASDNTLASYRRDLGDADAYL------EAPCGGVFKASAADIRKYLADM 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + R LS ++ F K+L + + + + KK LP+ L+E + L+ Sbjct: 62 TARGFASTTQARKLSSLRQFFKFLYSEGMRDDDPTGVLDSPKKGRPLPKTLSESEMNALL 121 Query: 139 DNVLLHTSHETKWIDARNSA-----ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 + AR +A +L +LY GLR+SE +SL + + D+ ++GK Sbjct: 122 ERAADEAREAPAGTPARVAAQRLSTLLEMLYASGLRVSELVSLPLRVALRDERFFTVRGK 181 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRR 252 G K R+VPL R+A+ + + LF + L+ VF R ++ L Sbjct: 182 GGKERMVPLSAKAREAVALWLKERARHPSFANSPWLFPAVSASGYLSRQVFARELKGLAG 241 Query: 253 YLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 G+ + + H LRH+FA+HLL NG DLR++Q +LGH +STTQIYT+V K + Sbjct: 242 RAGISTAKISPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTHVLEKR----LQ 297 Query: 312 EIYDQTHP 319 E+ + HP Sbjct: 298 ELVQKHHP 305 >gi|320535370|ref|ZP_08035484.1| putative site-specific tyrosine recombinase XerD [Treponema phagedenis F0421] gi|320147772|gb|EFW39274.1| putative site-specific tyrosine recombinase XerD [Treponema phagedenis F0421] Length = 255 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 81/263 (30%), Positives = 146/263 (55%), Gaps = 23/263 (8%) Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 FI R I ++ + ++ + SF ++L + ++ N+ ++ +LPR L+ ++ Sbjct: 3 FIISRSEAGIMGKTTAKDIAALNSFYRFLILENVRQDNPAENIEAPRREKNLPRVLSPEE 62 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L+D++ L++ + R+ A+ L+Y GLR+SE + L+ ++I D+ L++ GK Sbjct: 63 VDLLLDSIPLNSPN-----GIRDRALFELIYSAGLRVSEVVGLSLEDIFFDEQLLKVTGK 117 Query: 194 GDKIRIVPLLPSVRKAILEYYD------LCP-FDLNLNIQLPLFRGIRGKPLN-PGVFQR 245 G K RIVP ++ + Y D + P + N + +F GK L+ G+++R Sbjct: 118 GSKERIVPFGKQAKQQLQNYIDGARKAFIKPQYTENTETRGAVFLNKNGKRLSRKGIWKR 177 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 ++++ G+ +T HTLRHS+ATHLL+ G DLRS+Q +LGH +STTQIYT++ + Sbjct: 178 -LQEIEVISGI--NTKVHTLRHSYATHLLAGGADLRSVQCLLGHADISTTQIYTHIETDE 234 Query: 306 GGDWMMEIYDQTHPSITQKDKKN 328 +E+Y + T+K+K N Sbjct: 235 -----LEMYHKEF--FTEKEKTN 250 >gi|306836381|ref|ZP_07469359.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726] gi|304567741|gb|EFM43328.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726] Length = 305 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 85/297 (28%), Positives = 144/297 (48%), Gaps = 31/297 (10%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 +G ++ T++ Y D + +E I T + +R ++ + +L Sbjct: 32 KGRAEATVRGYRADLKNL-------AQE---IDTFADFNLNNLRQWLGNAVAEGKARATL 81 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 R + +K+F + ++ + T + K LP + +QA LV N + + E Sbjct: 82 ARRTASVKAFSTWAERERYLTRDVAARLVTPKVGQHLPTVMAPQQAGELVGNAV--SVDE 139 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 + R+SAIL LLY G+R++E + L +++ +ST R+ GKG+K R+VP + Sbjct: 140 AHF--QRDSAILELLYATGMRVAELVRLDLEDVDFKRSTARVTGKGNKQRVVPFGAAATD 197 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA------ 262 A+ ++ D ++ +F G RG ++ RQ+RR + + T Sbjct: 198 ALQQWIDGGRKEMARGETQAIFVGSRGARIDQ-------RQVRRIVDKAATVTGTSGLTP 250 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H +RH ATHLL G DLR +Q +LGH LSTTQIYT+V++K + ++Y Q HP Sbjct: 251 HGVRHLAATHLLEGGADLRVVQELLGHSSLSTTQIYTHVSAKR----LKQVYSQAHP 303 >gi|220917980|ref|YP_002493284.1| tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-1] gi|219955834|gb|ACL66218.1| tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-1] Length = 343 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 97/313 (30%), Positives = 143/313 (45%), Gaps = 23/313 (7%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 E+ +E + + L E+ S T ++Y+ D Q+ +LA Q + S +R Sbjct: 11 EVPEEIRRFDAYLASEKRASPHTRKAYQVDLAQYAAYLADQG------QPLVPSSPALVR 64 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F++ R+ G SL R LS ++S ++L + + + + + K+ LP L E+ Sbjct: 65 GFLA-RQAGAAGAVSLGRKLSALRSLYRFLVREGLAPGNPARAVASPKRPKRLPEVLPEE 123 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + LV+ T + R+ A L LLYG GLR+SE L +++ +R+ G Sbjct: 124 EVAALVETPDAATEAP---LALRDRAFLELLYGSGLRVSELTGLDLEDLDLAGGLVRVLG 180 Query: 193 KGDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 K +K RIVP A+ Y D L + +F RG L R + Sbjct: 181 KRNKERIVPFGAPAADALRRYLDGARPVLAAGPDHARAGDAVFLNFRGGRLTSRSVARRL 240 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 GLP H LRH FATHLL NG DLR IQ +LGH LSTTQ YT++ Sbjct: 241 DGWVLASGLPRHVHPHVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTHL------ 294 Query: 308 DW--MMEIYDQTH 318 DW + +YD H Sbjct: 295 DWKRLAAVYDAAH 307 >gi|269956359|ref|YP_003326148.1| tyrosine recombinase XerD [Xylanimonas cellulosilytica DSM 15894] gi|269305040|gb|ACZ30590.1| tyrosine recombinase XerD [Xylanimonas cellulosilytica DSM 15894] Length = 331 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 99/333 (29%), Positives = 154/333 (46%), Gaps = 37/333 (11%) Query: 9 IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68 +VS L ++L +L +ERGLS T +Y D +++ L E++ ++ + Sbjct: 11 VVSGPLEAALDDYLAHLRVERGLSHNTTAAYRRDLARYVRHL-----ERLGRTSLGAVRE 65 Query: 69 TEIRAFISKRRTQKIGD-----RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 ++ F++ R G S R+L+ ++ + ++ + T+ +R + Sbjct: 66 DDVTGFVTAVREGADGGARLSASSTARALAAVRGWHRFAHAEGLATQDPAAEVRAPTQLR 125 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL------- 176 LP AL+ L+D + + R+ A+L LLY G RISE + L Sbjct: 126 RLPHALSVDAVTRLLDAAGVGDGP----VPLRDRALLELLYSTGGRISEVVGLDVDALGW 181 Query: 177 -----TPQNIMDDQ--STLRIQGKGDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQL 227 P + D + +R+ GKGDK RIVP+ S A L+ Y P Sbjct: 182 LGAGSAPGDGAGDDGPAVVRLHGKGDKQRIVPV-GSYAIAALDAYLVRARPALAAAGSGT 240 Query: 228 P-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286 P LF RG+PL+ ++ GL + + HTLRHSFATHLL G D+R +Q + Sbjct: 241 PALFLNTRGRPLSRQSAWAVLQAASARAGLE-NVSPHTLRHSFATHLLQGGADVRVVQEL 299 Query: 287 LGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LGH ++TTQIYT V D + E+Y THP Sbjct: 300 LGHASVTTTQIYTMVTP----DTLREVYAATHP 328 >gi|171742548|ref|ZP_02918355.1| hypothetical protein BIFDEN_01661 [Bifidobacterium dentium ATCC 27678] gi|283456366|ref|YP_003360930.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium dentium Bd1] gi|171278162|gb|EDT45823.1| hypothetical protein BIFDEN_01661 [Bifidobacterium dentium ATCC 27678] gi|283103000|gb|ADB10106.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium dentium Bd1] Length = 318 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 91/318 (28%), Positives = 158/318 (49%), Gaps = 28/318 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L ++++ERGLSK T+ +Y D +++ +L + I + ++ + +++ Sbjct: 9 RQFLAHIDVERGLSKATVCAYGSDLHKYVSWL-----HEQGIHDLDDVTTRHVEEYVASL 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 RS R L+ I +F ++ + + ++ K +++LP L+ + + L+ Sbjct: 64 DDSGESARSKARRLASIHAFHRFALSEHVVHDDVAAQVKAPKGASTLPDVLSVDEVMRLM 123 Query: 139 DNVLLHTSHETK--WIDA--------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 D++ L H+ K DA R+ A+L +Y G R+SEA + +I D Sbjct: 124 DSIPLSRHHDGKQGHGDAAADDPVMLRDKALLEFMYATGSRVSEACGVDLDDIDLDDKVA 183 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGI----RGKPLNPGVF 243 R+ GKG K R+VP+ +A+ Y P + + R + RGK L+ Sbjct: 184 RLMGKGSKQRLVPVGSFACEALRRYLRFGRPVLQSKSKGAAEHRAVFLNKRGKRLSRQSV 243 Query: 244 QRYIRQL--RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 IR R ++ PL HTLRHSFATHL+ G D+R++Q +LGH ++TTQIYT+V Sbjct: 244 WEIIRTAGERAHITKPLHP--HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHV 301 Query: 302 NSKNGGDWMMEIYDQTHP 319 + +N ++E Y HP Sbjct: 302 SPEN----LIEAYLTAHP 315 >gi|58583617|ref|YP_202633.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv. oryzae KACC10331] gi|58428211|gb|AAW77248.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 347 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 90/310 (29%), Positives = 150/310 (48%), Gaps = 19/310 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-----RQLSYTEIRAF 74 +L L++ER +S TL +Y D + + E QT QL +R F Sbjct: 48 EFLTYLQVERQVSAHTLDAYRRDLAALVAWTGERNAEDGAQQTATPVDSAQLDSAHLRQF 107 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 ++ + + +SL+R LS +S+ +L K S +R K LP+ L+ +A Sbjct: 108 VAAEHRRGLSPKSLQRRLSACRSYYAWLLKHGRIAASPAAALRAPKAQRKLPQVLDADEA 167 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 + LV+ + R+ A+L L Y GLR+SE +L +++ D + + GKG Sbjct: 168 VRLVEVP------TDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVMVLGKG 221 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 K R+VP+ A+ ++ D + +F G G ++ Q I+QL Sbjct: 222 SKQRLVPVGSHAIAALRQWRR----DSGASADAHVFPGRTGGAISQRAVQIRIKQLAVRQ 277 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ H LRHSFA+H+L + GDLR +Q +LGH ++TTQIYT+++ ++ + ++Y Sbjct: 278 GMFKDVHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQH----LAKVY 333 Query: 315 DQTHPSITQK 324 D HP +K Sbjct: 334 DAAHPRARRK 343 >gi|297569003|ref|YP_003690347.1| tyrosine recombinase XerC [Desulfurivibrio alkaliphilus AHT2] gi|296924918|gb|ADH85728.1| tyrosine recombinase XerC [Desulfurivibrio alkaliphilus AHT2] Length = 330 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 97/346 (28%), Positives = 153/346 (44%), Gaps = 55/346 (15%) Query: 9 IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68 + S L + +L+ L++E+G S T+ SY D +F A ++ + QL Sbjct: 1 MTSDRLAEHVDGFLRWLQVEKGYSPHTVSSYRRDLDEF----AALDRGAGPLERVDQLDA 56 Query: 69 TEIRAFI----SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 +RAF+ + R+ S+ R LS +++F +YL+K + + K Sbjct: 57 RRVRAFVYSLHGRNRSS-----SVARKLSALRTFFRYLQKNGVIAHDPAAAVAAPKAEGY 111 Query: 125 LPRALNEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 LP L+ VD V LL AR+ A+L LLY G+R++E +L + + Sbjct: 112 LPTVLS-------VDEVFSLLEMPGPADTYAARDRAMLELLYSTGMRVAELAALNLEQLD 164 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC------------------------- 217 + +R++GKG+K R+VP+ +A+ Y Sbjct: 165 LAEGMVRVRGKGNKERLVPIGTPACEAVQAYLPQREVLLRAAKREREEPQEEKPPAPAGG 224 Query: 218 ----PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 P + PL RG L +R ++ G+ + H LRHSFATHL Sbjct: 225 KRSRPARREAAQEQPLLLNARGGRLTTRSIERLVKLYAERAGIAARVSPHALRHSFATHL 284 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 L G DLR++Q +LGH LSTTQ YT++N D + +YD+ HP Sbjct: 285 LEMGADLRTVQELLGHASLSTTQRYTHLNL----DHLTAVYDKAHP 326 >gi|224537518|ref|ZP_03678057.1| hypothetical protein BACCELL_02397 [Bacteroides cellulosilyticus DSM 14838] gi|224520831|gb|EEF89936.1| hypothetical protein BACCELL_02397 [Bacteroides cellulosilyticus DSM 14838] Length = 316 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 94/291 (32%), Positives = 147/291 (50%), Gaps = 24/291 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT--EIRAFIS 76 + + Q L++E+ LS TL +Y D + L FL + I LS T +++ F + Sbjct: 18 RKYQQYLKLEKALSANTLDAYLTDLDKLLRFL--------KAENIDMLSVTLDDLQRFAA 69 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 I RS R +SGIKSF +L + + K LP L ++ T Sbjct: 70 GLHDIGIHPRSQARIMSGIKSFFHFLIMADYREDDPSELLEGPKIGFKLPEVLTVEEIDT 129 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 ++ V + +K RN AIL LY CGLR+SE +L + D+ ++++GKG K Sbjct: 130 IIATVDM-----SKKEGQRNRAILETLYSCGLRVSELCNLKLSELYFDEGFIKVEGKGSK 184 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLN-----IQLPLFRGIRGKPLNPGVFQRYIRQLR 251 R+VP+ P K I +Y+ L D NL + +F G ++ + I++L Sbjct: 185 QRLVPISPRAIKEI-KYWLL---DRNLGKIKKGFEDYVFLARWGNSISRIMVFHLIKELA 240 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 G+ + + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ Sbjct: 241 EKAGITKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHID 291 >gi|78186473|ref|YP_374516.1| tyrosine recombinase XerD [Chlorobium luteolum DSM 273] gi|78166375|gb|ABB23473.1| Tyrosine recombinase XerD [Chlorobium luteolum DSM 273] Length = 306 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 86/302 (28%), Positives = 151/302 (50%), Gaps = 13/302 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L IER + T +SY D ++L+ + E+ + ++ I + I F+ Sbjct: 15 EGFLDYLFIERNFAGNTRESYRNDLGRYLLAM---QEDDVPLEAI---TAERINHFVLAL 68 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S+ R++S I+S ++L + + K++ LP L ++ ++ Sbjct: 69 HQAGLEPSSIARNVSAIRSLHRFLFNEHRLASNPAETLHQPKQARYLPAVLTLQETERVL 128 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + +L + + R+ AIL LLY G+R++E + +T QN+ D+ +RI GKG K R Sbjct: 129 EAPMLQSPPGRFLL--RDRAILELLYASGIRVTELVDMTQQNLYLDERFIRIFGKGSKER 186 Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ + I Y + L N N LF RG+ L +++ R G+ Sbjct: 187 LVPIGDAAAAWIRRYREELRMKLSNRNSLDHLFLNARGRKLTRMAVYNMVKEYARLAGIE 246 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + + HT RH+FATHLL G DLR++Q +LGH + TQIYT+++ ++ E++ Sbjct: 247 KNISPHTFRHTFATHLLEGGADLRAVQEMLGHSSIVATQIYTHIDRT----FVKEVHRTC 302 Query: 318 HP 319 HP Sbjct: 303 HP 304 >gi|317121982|ref|YP_004101985.1| tyrosine recombinase XerD [Thermaerobacter marianensis DSM 12885] gi|315591962|gb|ADU51258.1| tyrosine recombinase XerD subunit [Thermaerobacter marianensis DSM 12885] Length = 401 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 90/305 (29%), Positives = 146/305 (47%), Gaps = 16/305 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +L+ L +ERGL+ TL++Y E+ R L + A++ R Sbjct: 23 EYLEILRVERGLAARTLEAYR--RDLADFAAFAAGRERGPEAVTRSL----VMAYLHHLR 76 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 ++ R L+ ++ F +YL + ++ + M + LPR ++ + Sbjct: 77 QAGRAHTTVARRLAALRGFFRYLVEEGRLSQDPVEGMTAPRAGRPLPRVMSVAEV----- 131 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 +L R+ A+L LLY GLR+SE + L +++ D LR +GKG K R+ Sbjct: 132 ERMLEVPQPPSPAGLRDRAVLELLYATGLRVSELVGLDLDDLLLDHGLLRCRGKGGKERV 191 Query: 200 VPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VP+ P +A Y + P Q LF RG L+ +R+ R G+ Sbjct: 192 VPVAPPAVEATRIYLERGRPHLCRRPSQRALFLNHRGGRLSRQWVWHLLRRAARRAGVSR 251 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + + HT+RHSFATHLL+ G DLR++Q +LGH +STTQIYT++ + ++E Y + H Sbjct: 252 AVSPHTIRHSFATHLLAGGADLRAVQELLGHADISTTQIYTHLTRHH----LLEAYLKAH 307 Query: 319 PSITQ 323 P + Q Sbjct: 308 PRLAQ 312 >gi|170760942|ref|YP_001787191.1| tyrosine recombinase XerD [Clostridium botulinum A3 str. Loch Maree] gi|169407931|gb|ACA56342.1| tyrosine recombinase XerD [Clostridium botulinum A3 str. Loch Maree] Length = 291 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 85/301 (28%), Positives = 161/301 (53%), Gaps = 17/301 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +N++++L+ ++ LSK TL++Y D +F F+ E+ +++ T+ I AF+ Sbjct: 6 ENYIKDLQ-KKNLSKNTLEAYRRDVEKFSEFVRNREEKMLSVDTV------TIMAFVQYL 58 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + S+ R++ I++F KYL K+ + +E L K ++P+ L+ ++ V Sbjct: 59 QREGRATSSIVRNIVSIRNFYKYLIKKNMISEDPTLGYEIPKIERTIPKILSVEE----V 114 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D +L K + R+ A+L L+Y G++I+E L+L +I + ++ +G + R Sbjct: 115 DKLLNSPDSSKKGL--RDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRER 172 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 I+P+ K + Y ++ P N+ LF ++G + F + I+ + + Sbjct: 173 IIPIGSYAIKCLKNYLEVRPAINVYNLDY-LFLNLKGTQMTRQGFWKIIKFYAKEASIDK 231 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 ++TLRHSFA HLL NG D++S+Q +LGH L+ TQIY++++ K+ + E+Y H Sbjct: 232 EIDSYTLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSK---IAEVYKNAH 288 Query: 319 P 319 P Sbjct: 289 P 289 >gi|160891605|ref|ZP_02072608.1| hypothetical protein BACUNI_04058 [Bacteroides uniformis ATCC 8492] gi|317478317|ref|ZP_07937481.1| tyrosine recombinase XerD [Bacteroides sp. 4_1_36] gi|156859012|gb|EDO52443.1| hypothetical protein BACUNI_04058 [Bacteroides uniformis ATCC 8492] gi|316905476|gb|EFV27266.1| tyrosine recombinase XerD [Bacteroides sp. 4_1_36] Length = 317 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 92/294 (31%), Positives = 150/294 (51%), Gaps = 18/294 (6%) Query: 16 KERQN-----WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70 KE+Q + Q L++E+ LS T+ +Y+ D ++ L FL E I I + + Sbjct: 10 KEKQTLIIRKYHQYLKLEKALSPNTVDAYQTDLQKLLHFLE---GEGIAIL---DTTLDD 63 Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 ++ F S I RS R LSGIKSF +L + K LP L Sbjct: 64 LQHFASGLHDIGIHPRSQARILSGIKSFFHFLVMADYLEGDPSELLEGPKIGFKLPEVLT 123 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 ++ ++ + L T+ RN AIL LY CGLR+SE +L ++ D+ +++ Sbjct: 124 VEEIDRIISAIDLGTNE-----GQRNRAILETLYSCGLRVSELCNLKISDLYFDEGFIKV 178 Query: 191 QGKGDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 +GKG K R+VP+ K I ++ + + + + +F GK ++ + I+ Sbjct: 179 EGKGSKQRLVPISSRAIKEIRNWFVDRNGGWKIKKDFEDYVFLARWGKNISRIMVFHLIK 238 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 +L + G+ + + HT RHSFATHLL G +LR+IQS+LGH ++TT+IYT+++ Sbjct: 239 ELAKKAGITKNISPHTFRHSFATHLLEGGANLRAIQSMLGHESIATTEIYTHID 292 >gi|148267742|ref|YP_001246685.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus JH9] gi|150393800|ref|YP_001316475.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus JH1] gi|189030083|sp|A6U170|XERC_STAA2 RecName: Full=Tyrosine recombinase xerC gi|189030084|sp|A5ISD6|XERC_STAA9 RecName: Full=Tyrosine recombinase xerC gi|147740811|gb|ABQ49109.1| tyrosine recombinase XerC subunit [Staphylococcus aureus subsp. aureus JH9] gi|149946252|gb|ABR52188.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus JH1] Length = 298 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 100/322 (31%), Positives = 166/322 (51%), Gaps = 42/322 (13%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 ++ +L L++ER S+ TL+SY+ D QF FL +E + ++T Y + R ++S Sbjct: 5 QEAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLE---QEHLQLKT---FEYRDARNYLSY 58 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSLPRALNEKQ 133 + + S+ R +S +++F +Y +T + NI+N + + KK LP+ E++ Sbjct: 59 LYSNHLKRTSVSRKISTLRTFYEYW----MTLDENIINPFVQLVHPKKEKYLPQFFYEEE 114 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L V TS + R+ IL LLY G+R+SE +++ Q+I + + + GK Sbjct: 115 MEALFKTVEEDTSK-----NLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGK 169 Query: 194 GDKIRIVPLLPSVRKAILEYYDL------CPFD---LNLNIQLPLFRGIRGKPLNPGVFQ 244 G K R VP R++I Y + C D LN+ + RG+R LN V Sbjct: 170 GSKERFVPFGAYCRQSIENYLEHFKPIQSCNHDFLILNMKGEAITERGVR-YVLNDIV-- 226 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 +R G+ H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++ Sbjct: 227 ------KRTAGVS-EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQ 279 Query: 305 NGGDWMMEIYDQTHPSITQKDK 326 + ++Y HP ++++ Sbjct: 280 Q----LRKVYLNAHPRAKKENE 297 >gi|238796542|ref|ZP_04640049.1| Tyrosine recombinase xerD [Yersinia mollaretii ATCC 43969] gi|238719520|gb|EEQ11329.1| Tyrosine recombinase xerD [Yersinia mollaretii ATCC 43969] Length = 299 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 91/303 (30%), Positives = 153/303 (50%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ER L++ TL SY D +L + + + + E+++F+++R Sbjct: 10 EQFLDALWLERNLAENTLASYRLDLHALTGWLDHHGSDLLRAGS------QELQSFLAER 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K+ + + + K LP+ L+E Q Sbjct: 64 IEGGYKATSSARLLSAMRRLFQYLYREKLRDDDPTAALSSPKLPQRLPKDLSEAQV---- 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + LL+ + ++ R+ A+L +LY GLR+SE + LT ++ Q +R+ GKG+K R Sbjct: 120 -DALLNAPNVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKER 178 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL I Y + P+ +N LF R + + F I+ G+ Sbjct: 179 LVPLGEEAVYWIENYMEHGRPWLINGQALDVLFPSNRSQQMTRQTFWHRIKHYAILAGID 238 Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Q Sbjct: 239 SERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQQ 294 Query: 317 THP 319 HP Sbjct: 295 HHP 297 >gi|326335714|ref|ZP_08201900.1| site-specific tyrosine recombinase XerC [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692143|gb|EGD34096.1| site-specific tyrosine recombinase XerC [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 296 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 91/301 (30%), Positives = 151/301 (50%), Gaps = 14/301 (4%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E+ S T+ +Y D +F FL EE T++ + +++Y IR++I KI Sbjct: 9 LRLEKKYSPHTVTAYLTDVEEFAAFLK---EEDPTVE-LSKVNYPLIRSWIIHLVESKIT 64 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 +RS+ R ++ +K++ +L + + LK L +EK+ +++VL Sbjct: 65 NRSINRKIASLKAYYAFLVRSLAIKSTPFQQHIPLKTQKKLSIPFSEKE----IEDVLSI 120 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + E + RN I+ L Y G+R SE + L +I Q T+++ GK +K RI+PL+ Sbjct: 121 PTEEDSYTSLRNRMIIELFYATGIRRSELIELKINDIDLSQKTIKVLGKRNKERIIPLIH 180 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 +V ++ LE Y L D+ + + LF GK + P + I + + H Sbjct: 181 TVVES-LEKYLLIRKDVETSEEF-LFLTNNGKKMYPKLVYNIINSYFSSVTTKQKKSPHV 238 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 LRHSFATHLL NG DL +++ +LGH L+ TQ+YT+ + + Y HP T K Sbjct: 239 LRHSFATHLLDNGADLNAVKELLGHAGLAATQVYTH----SSIAELKNQYKNAHPRETNK 294 Query: 325 D 325 + Sbjct: 295 E 295 >gi|306822461|ref|ZP_07455839.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679] gi|309801460|ref|ZP_07695587.1| tyrosine recombinase XerD [Bifidobacterium dentium JCVIHMP022] gi|304554006|gb|EFM41915.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679] gi|308221975|gb|EFO78260.1| tyrosine recombinase XerD [Bifidobacterium dentium JCVIHMP022] Length = 318 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 91/318 (28%), Positives = 156/318 (49%), Gaps = 28/318 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L ++++ERGLSK T+ +Y D +++ +L + I + ++ + +++ Sbjct: 9 RQFLAHIDVERGLSKATVCAYGSDLHKYVSWL-----HEQGIHDLDDVTTRHVEEYVASL 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 RS R L+ I +F ++ + + ++ K +++LP L+ + + L+ Sbjct: 64 DDSGESARSKARRLASIHAFHRFALSEHVVHDDVASQVKAPKGASTLPDVLSVDEVMRLM 123 Query: 139 DNVLLHTSHETK--WIDA--------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 D++ L H+ K DA R+ A+L +Y G R+SEA + +I D Sbjct: 124 DSIPLSRHHDGKQGHGDAAADDPVMLRDKALLEFMYATGSRVSEACGVDLDDIDLDDKVA 183 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-----NLNIQLPLFRGIRGKPLNPGVF 243 R+ GKG K R+VP+ +A+ Y L +F RGK L+ Sbjct: 184 RLMGKGSKQRLVPVGSFACEALRRYLRFGRPALQSKSKGAAEHRAVFLNKRGKRLSRQSV 243 Query: 244 QRYIRQL--RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 IR R ++ PL HTLRHSFATHL+ G D+R++Q +LGH ++TTQIYT+V Sbjct: 244 WEIIRTAGERAHITKPLHP--HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHV 301 Query: 302 NSKNGGDWMMEIYDQTHP 319 + +N ++E Y HP Sbjct: 302 SPEN----LIEAYLTAHP 315 >gi|227889898|ref|ZP_04007703.1| site-specific recombinase XerD [Lactobacillus johnsonii ATCC 33200] gi|268319571|ref|YP_003293227.1| tyrosine recombinase XerC [Lactobacillus johnsonii FI9785] gi|227849342|gb|EEJ59428.1| site-specific recombinase XerD [Lactobacillus johnsonii ATCC 33200] gi|262397946|emb|CAX66960.1| tyrosine recombinase XerC [Lactobacillus johnsonii FI9785] Length = 307 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 98/316 (31%), Positives = 150/316 (47%), Gaps = 18/316 (5%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L+K+ Q++L ER SK T+ SY D + F +E Q+ ++ Sbjct: 7 KLIKQFQDYLN---YERNYSKNTVNSYLNDLNEAKEFF----KENGGFSGWDQVKSRDVE 59 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F+ TQ + R +S ++SF ++L KR++ + + LP+ EK Sbjct: 60 IFLQNLATQNRSRTTQARKMSSLRSFYRFLVKREVLDNDPMQTISLRLGEKKLPQFFYEK 119 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + + D++ H + RN A+ L Y G+R+SE SL I D + + G Sbjct: 120 EMRQVFDSLAGHEK-----LVVRNRAMFELFYATGMRLSEMASLKLDQIDFDLKIILVHG 174 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLP-LFRGIRGKPLNPGVFQRYIRQL 250 KG+K R VP A+ EY D DL N L +F RG+ L + ++Q+ Sbjct: 175 KGNKDRYVPFGKDAANALKEYCDESRLDLLGKNEDLGYVFLNNRGQKLTGRGIEYIMQQV 234 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ H LRHSFAT +L+NG DLRS+Q +LGH LSTTQIYT+V K+ + Sbjct: 235 FIKAGVGGKVHPHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKH----L 290 Query: 311 MEIYDQTHPSITQKDK 326 Y + P +KD+ Sbjct: 291 QADYQKFFPRKDKKDE 306 >gi|15924242|ref|NP_371776.1| site-specific recombinase XerC-like protein [Staphylococcus aureus subsp. aureus Mu50] gi|15926835|ref|NP_374368.1| hypothetical protein SA1095 [Staphylococcus aureus subsp. aureus N315] gi|156979573|ref|YP_001441832.1| site-specific recombinase XerC homologue [Staphylococcus aureus subsp. aureus Mu3] gi|253315609|ref|ZP_04838822.1| hypothetical protein SauraC_05582 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006039|ref|ZP_05144640.2| hypothetical protein SauraM_06200 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795692|ref|ZP_05644671.1| tyrosine recombinase XerC [Staphylococcus aureus A9781] gi|258415916|ref|ZP_05682186.1| conserved hypothetical protein [Staphylococcus aureus A9763] gi|258421678|ref|ZP_05684602.1| tyrosine recombinase XerC [Staphylococcus aureus A9719] gi|258434834|ref|ZP_05688908.1| xerC protein [Staphylococcus aureus A9299] gi|258444590|ref|ZP_05692919.1| xerC protein [Staphylococcus aureus A8115] gi|258447577|ref|ZP_05695721.1| tyrosine recombinase xerC [Staphylococcus aureus A6300] gi|258449419|ref|ZP_05697522.1| tyrosine recombinase xerC [Staphylococcus aureus A6224] gi|258454798|ref|ZP_05702762.1| tyrosine recombinase XerC [Staphylococcus aureus A5937] gi|269202868|ref|YP_003282137.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ED98] gi|282892740|ref|ZP_06300975.1| tyrosine recombinase XerC [Staphylococcus aureus A8117] gi|282927594|ref|ZP_06335210.1| tyrosine recombinase XerC [Staphylococcus aureus A10102] gi|295406188|ref|ZP_06815995.1| tyrosine recombinase XerC [Staphylococcus aureus A8819] gi|296274810|ref|ZP_06857317.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus MR1] gi|297244416|ref|ZP_06928299.1| tyrosine recombinase XerC [Staphylococcus aureus A8796] gi|54039882|sp|P67631|XERC_STAAN RecName: Full=Tyrosine recombinase xerC gi|54042779|sp|P67630|XERC_STAAM RecName: Full=Tyrosine recombinase xerC gi|166918904|sp|A7X1M7|XERC_STAA1 RecName: Full=Tyrosine recombinase xerC gi|13701052|dbj|BAB42347.1| xerC [Staphylococcus aureus subsp. aureus N315] gi|14247022|dbj|BAB57414.1| site-specific recombinase XerC homologue [Staphylococcus aureus subsp. aureus Mu50] gi|156721708|dbj|BAF78125.1| site-specific recombinase XerC homologue [Staphylococcus aureus subsp. aureus Mu3] gi|257789664|gb|EEV28004.1| tyrosine recombinase XerC [Staphylococcus aureus A9781] gi|257839252|gb|EEV63726.1| conserved hypothetical protein [Staphylococcus aureus A9763] gi|257842364|gb|EEV66789.1| tyrosine recombinase XerC [Staphylococcus aureus A9719] gi|257849195|gb|EEV73177.1| xerC protein [Staphylococcus aureus A9299] gi|257850083|gb|EEV74036.1| xerC protein [Staphylococcus aureus A8115] gi|257853768|gb|EEV76727.1| tyrosine recombinase xerC [Staphylococcus aureus A6300] gi|257857407|gb|EEV80305.1| tyrosine recombinase xerC [Staphylococcus aureus A6224] gi|257863181|gb|EEV85945.1| tyrosine recombinase XerC [Staphylococcus aureus A5937] gi|262075158|gb|ACY11131.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ED98] gi|282590597|gb|EFB95674.1| tyrosine recombinase XerC [Staphylococcus aureus A10102] gi|282764737|gb|EFC04862.1| tyrosine recombinase XerC [Staphylococcus aureus A8117] gi|285816934|gb|ADC37421.1| Site-specific tyrosine recombinase [Staphylococcus aureus 04-02981] gi|294968776|gb|EFG44798.1| tyrosine recombinase XerC [Staphylococcus aureus A8819] gi|297178446|gb|EFH37692.1| tyrosine recombinase XerC [Staphylococcus aureus A8796] gi|312829646|emb|CBX34488.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315131045|gb|EFT87029.1| hypothetical protein CGSSa03_05869 [Staphylococcus aureus subsp. aureus CGS03] gi|329727078|gb|EGG63534.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus 21172] Length = 298 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 100/322 (31%), Positives = 166/322 (51%), Gaps = 42/322 (13%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 ++ +L L++ER S+ TL+SY+ D QF FL +E + ++T Y + R ++S Sbjct: 5 QEAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLE---QEHLQLKT---FEYRDARNYLSY 58 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSLPRALNEKQ 133 + + S+ R +S +++F +Y +T + NI+N + + KK LP+ E++ Sbjct: 59 LYSNHLKRTSVSRKISTLRTFYEYW----MTLDENIINPFVQLVHPKKEKYLPQFFYEEE 114 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L V TS + R+ IL LLY G+R+SE +++ Q+I + + + GK Sbjct: 115 MEALFKTVEEDTSK-----NLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGK 169 Query: 194 GDKIRIVPLLPSVRKAILEYYDL------CPFD---LNLNIQLPLFRGIRGKPLNPGVFQ 244 G K R VP R++I Y + C D LN+ + RG+R LN V Sbjct: 170 GSKERFVPFGAYCRQSIENYLEHFKPIQSCNHDFLILNMKGEAITERGVR-YVLNDIV-- 226 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 +R G+ H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++ Sbjct: 227 ------KRTAGVS-EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQ 279 Query: 305 NGGDWMMEIYDQTHPSITQKDK 326 + ++Y HP ++++ Sbjct: 280 Q----LRKVYLNAHPRAKKENE 297 >gi|153830656|ref|ZP_01983323.1| tyrosine recombinase XerD [Vibrio cholerae 623-39] gi|148873865|gb|EDL72000.1| tyrosine recombinase XerD [Vibrio cholerae 623-39] Length = 302 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 94/304 (30%), Positives = 156/304 (51%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + ERGL++ T+ SY D + L ++A + + + I E ++++S+ Sbjct: 13 EQFLDTMWFERGLAENTVVSYRNDLSKLLEWMA---QNQYRLDFISFAGLQEYQSWLSE- 68 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q S R LS I+ +YL + K+ + + + K LP+ L+E Q Sbjct: 69 --QNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQV---- 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL ++ R+ A+L LLY GLR++E +SLT +N+ Q +R+ GKG K R Sbjct: 123 -EALLSAPDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKER 181 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VP+ + + I E + L L Q +F RG+ + F I+ G+ Sbjct: 182 LVPMGENAIEWI-ETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGI 240 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + H LRH+FATHLL+ G DLR +Q +LGH LSTTQIYT+V ++ + ++++ Sbjct: 241 DVEKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHN 296 Query: 316 QTHP 319 + HP Sbjct: 297 EHHP 300 >gi|197123191|ref|YP_002135142.1| tyrosine recombinase XerC [Anaeromyxobacter sp. K] gi|196173040|gb|ACG74013.1| tyrosine recombinase XerC [Anaeromyxobacter sp. K] Length = 343 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 97/313 (30%), Positives = 144/313 (46%), Gaps = 23/313 (7%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 E+ +E + + L E+ S T ++Y+ D Q+ +LA Q + S +R Sbjct: 11 EVPEEIRRFDAYLASEKRASPHTRKAYQVDLAQYAAYLADQG------QPLVPSSPALVR 64 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F++ R+ G SL R LS ++S ++L + + + + + K+ LP L E+ Sbjct: 65 GFLA-RQAGAAGAVSLGRKLSALRSLYRFLVREGLAPGNPARAVASPKRPKRLPEVLPEE 123 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + LV+ T + R+ A L LLYG GLR+SE L +++ +R+ G Sbjct: 124 EVAALVETPDAATEAP---LALRDRAFLELLYGSGLRVSELTGLDLEDLDLAGGLVRVLG 180 Query: 193 KGDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 K +K RIVP +A+ Y D L + +F RG L R + Sbjct: 181 KRNKERIVPFGAPAAEALRRYLDGARPVLATGPDHARAGDAVFLNFRGGRLTSRSVARRL 240 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 GLP H LRH FATHLL NG DLR IQ +LGH LSTTQ YT++ Sbjct: 241 DGWVLASGLPRHVHPHVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTHL------ 294 Query: 308 DW--MMEIYDQTH 318 DW + +YD H Sbjct: 295 DWKRLAAVYDAAH 307 >gi|148260468|ref|YP_001234595.1| phage integrase family protein [Acidiphilium cryptum JF-5] gi|146402149|gb|ABQ30676.1| phage integrase family protein [Acidiphilium cryptum JF-5] Length = 304 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 91/315 (28%), Positives = 156/315 (49%), Gaps = 26/315 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+++ ERG ++ T+ +Y+ D F F A + + ++ Sbjct: 8 EAFLESMVAERGAARNTILAYQADLADFAAFCASRGHGPA------EADAASVADYLGGL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 T + R+ R LS ++ F ++L + + + K + +LP+ ++E + V Sbjct: 62 ATAGLSARTQARRLSSLRQFQRFLLRDGQRADDPTALTSSPKLARTLPKTISEAE----V 117 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D +L + A L +LY G+RISE L L + D S L I+GKG + R Sbjct: 118 DALLTAAAAMPGQAGRVAEAGLEILYATGMRISELLVLPANALSTDASALLIKGKGGRER 177 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIR-GKPLNPGVFQRYIRQLRRYL 254 IVPL + R A ++ N + P LF G R G P+ F R ++++ Sbjct: 178 IVPLSAAARDAAARLREM-------NRKRPSRHLFPGRRMGFPMTRQAFARQLKRVAVMA 230 Query: 255 GL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ P + H+LRH+FATHLL+ G DLRS+Q++LGH +STTQIYT+V + + + ++ Sbjct: 231 GIHPARLSPHSLRHAFATHLLARGADLRSLQTLLGHADISTTQIYTHVLA----ERLQKL 286 Query: 314 YDQTHPSITQKDKKN 328 ++ HP T+ ++ Sbjct: 287 VEEHHPLATRPGRRK 301 >gi|120602477|ref|YP_966877.1| tyrosine recombinase XerD [Desulfovibrio vulgaris DP4] gi|120562706|gb|ABM28450.1| tyrosine recombinase XerD subunit [Desulfovibrio vulgaris DP4] gi|311233936|gb|ADP86790.1| tyrosine recombinase XerD [Desulfovibrio vulgaris RCH1] Length = 321 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 91/302 (30%), Positives = 150/302 (49%), Gaps = 22/302 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL++L +ERGL++ TL +Y D LI L + EE+ + + ++ + + R Sbjct: 31 WLEHLLVERGLAENTLAAYSAD----LIELQVFLEERGCL--LAEVDEQTLFMHVVDLRR 84 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + R+L R L+ ++ F + L + N K + +LP L + T++ Sbjct: 85 RGMAGRTLARHLATLRGFFAFAVGEGELEADPALFLENPKLARNLPDVLTRDEMATILAR 144 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 L + + R+ +L L+Y GLR+SE +L P + +R+ GKG K RIV Sbjct: 145 PDL-----SDRLGFRDRTMLELMYAAGLRVSELCALRPLDFDAQAGVVRVFGKGAKERIV 199 Query: 201 PLLPSVRKAILEYY--DLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 P+ V A++ Y D P F ++ +F GK L+ + +++ G+ Sbjct: 200 PVH-HVSCALVTAYLRDWRPAFS---PVEPAMFLNRSGKGLSRQAVWKVVKRHVAEAGIH 255 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + HT RHSFATHLL G DLRS+Q +LGH +S T+IYT+V + D + I++ Sbjct: 256 KDISPHTFRHSFATHLLEGGADLRSVQLLLGHADISATEIYTHVQA----DRLRRIHNAH 311 Query: 318 HP 319 HP Sbjct: 312 HP 313 >gi|15603566|ref|NP_246640.1| site-specific tyrosine recombinase XerC [Pasteurella multocida subsp. multocida str. Pm70] gi|34223005|sp|Q9CKC2|XERC_PASMU RecName: Full=Tyrosine recombinase xerC gi|12722110|gb|AAK03785.1| XerC [Pasteurella multocida subsp. multocida str. Pm70] Length = 295 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 99/304 (32%), Positives = 151/304 (49%), Gaps = 25/304 (8%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L IER +S TL +Y+ RQ + E IT + + ++ + +R +++ + Sbjct: 12 LRIERQVSPHTLTNYQ---RQLYRIVDILAENGIT--SWQAVTPSIVRFILAQSNKDGLK 66 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 +RSL LS ++ F YL +++ + + K++ LP+ ++ +Q L++N Sbjct: 67 ERSLALRLSVLRRFFTYLVQQQDINVNPATGVSAPKQNRHLPKNIDAEQVQQLLNN---- 122 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 S E ID R+ AIL LLY GLR+SE SL +I +R+ GKG+K RIVP Sbjct: 123 DSKEP--IDIRDRAILELLYSSGLRLSELQSLNLNSINTRVREVRVMGKGNKERIVPFGR 180 Query: 205 SVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 AI ++ + P D LF G L Q+ + GL Sbjct: 181 YASHAIQQWLKVRILFNPKDE------ALFVSQLGNRLTHRAIQQRLEVWGIKQGLSSHL 234 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 H LRHSFATH+L DLR++Q +LGH LSTTQIYT++N ++ + E+YD HP Sbjct: 235 NPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEVYDSAHPR 290 Query: 321 ITQK 324 +K Sbjct: 291 AKRK 294 >gi|145638777|ref|ZP_01794386.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittII] gi|148827463|ref|YP_001292216.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittGG] gi|145272372|gb|EDK12280.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittII] gi|148718705|gb|ABQ99832.1| tyrosine recombinase [Haemophilus influenzae PittGG] gi|309750267|gb|ADO80251.1| Site-specific, tyrosine recombinase XerD [Haemophilus influenzae R2866] Length = 297 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 90/295 (30%), Positives = 151/295 (51%), Gaps = 17/295 (5%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 IE+GLS+ T+QSY D +L + ++++T L ++ F+ +R + Sbjct: 16 IEKGLSENTVQSYRLDLTALCDWL---DKNDLSLET---LDAVHLQGFLGERLEKGYKAT 69 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R LS I+ +YL + K + + + K + LP+ L E+Q + LL+T Sbjct: 70 STARMLSAIRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQV-----SDLLNTP 124 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 ++ R+ A+L LLY GLR++E +SLT +N+ Q +R+ GKG+K RIVP+ Sbjct: 125 DVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184 Query: 207 RKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHT 264 + ++ P LN +F R + + F ++ + + H Sbjct: 185 AYWVRQFMLYGRPVLLNGQSSDVVFPSQRTQQMTRQTFWHRVKHYAILADIDADALSPHV 244 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LRH+FATHL+++G DLR +Q +LGH LSTTQIYT+V + + ++++ HP Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER----LKRLHERFHP 295 >gi|212702793|ref|ZP_03310921.1| hypothetical protein DESPIG_00823 [Desulfovibrio piger ATCC 29098] gi|212673655|gb|EEB34138.1| hypothetical protein DESPIG_00823 [Desulfovibrio piger ATCC 29098] Length = 312 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 98/323 (30%), Positives = 161/323 (49%), Gaps = 22/323 (6%) Query: 2 EGNNLPEIV--SFELLKER-QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI 58 E + LPE S ++LK++ W + L +RGLS T+ SY D F +FL +++ Sbjct: 3 EKSVLPEATERSLQILKKQIPAWGEYLLAQRGLSMRTVVSYRQDLENFFLFL-----DEL 57 Query: 59 TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL--NM 116 L ++ +++ R +K R+L R LS ++ F +Y T E +L N Sbjct: 58 DAGDKTSLDEHDLFLYLAWLRARKNAGRTLARRLSALRGFFEY------TVEEGLLESNP 111 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 +L +S LP+ L E + +D +L K R+ +L +LY GLR+SE +L Sbjct: 112 ASLLESPRLPQYLPEVLSKAEMDRLLQLPDMREK-CGRRDRCLLEMLYAAGLRVSEVCNL 170 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 ++ + + + GKG K R+VPL V + ++ D + + LF GK Sbjct: 171 LVADVDMQRGLVLVSGKGAKDRLVPLHSLVLDLLQQWLSFWRDDFSPQSRY-LFLNRSGK 229 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 L+ + +++ G+ S + HT RHSFATHLL G DLR++Q +LGH +S T+ Sbjct: 230 GLSRQYVWKMVKKYALLAGIRRSISPHTFRHSFATHLLEGGADLRAVQLLLGHADISATE 289 Query: 297 IYTNVNSKNGGDWMMEIYDQTHP 319 IYT+V ++ + ++ Q HP Sbjct: 290 IYTHVQAER----LHALHRQFHP 308 >gi|258541884|ref|YP_003187317.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-01] gi|256632962|dbj|BAH98937.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-01] gi|256636019|dbj|BAI01988.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-03] gi|256639074|dbj|BAI05036.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-07] gi|256642128|dbj|BAI08083.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-22] gi|256645183|dbj|BAI11131.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-26] gi|256648238|dbj|BAI14179.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-32] gi|256651291|dbj|BAI17225.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654282|dbj|BAI20209.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-12] Length = 306 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 96/290 (33%), Positives = 150/290 (51%), Gaps = 18/290 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE-IRAFISKRR 79 +L+ L ER + TL +YE D LA E T+QT + TE ++ +++ Sbjct: 9 FLEMLAAERAAAPNTLAAYEADLTSCAESLA---REGQTLQT----ATTEGLQNWMAALV 61 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 R++ R LS I+ F +L + + ++ ++ + K LPR L+E + L L++ Sbjct: 62 GSGQARRTVARRLSCIRQFYLFLLREGMRADNPAAHLDSPKPHTPLPRFLSESEVLALLN 121 Query: 140 NVL--LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 S K A L LLY GLRISE L+L + I DQ + ++GKG + Sbjct: 122 ACAEPAGASLAKKRRGILAKAALELLYASGLRISELLALPRKAIAGDQRMIMVRGKGGRE 181 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRG-IRGKPLNPGVFQRYIRQLR-RYL 254 R+VPL S R+A +++ +++ P LF G KP+ F R + + R Sbjct: 182 RLVPLSDSAREAAQAL-----LEVDAHLESPFLFPGRDPAKPMTRQAFDRILHTVAIRAE 236 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 P + H LRHSFATHLL++G DLR++Q +LGH ++TTQIYT+V ++ Sbjct: 237 IDPARLSPHVLRHSFATHLLAHGADLRALQMLLGHADIATTQIYTHVQTE 286 >gi|255320980|ref|ZP_05362153.1| tyrosine recombinase XerD [Acinetobacter radioresistens SK82] gi|262379931|ref|ZP_06073086.1| tyrosine recombinase XerD [Acinetobacter radioresistens SH164] gi|255301944|gb|EET81188.1| tyrosine recombinase XerD [Acinetobacter radioresistens SK82] gi|262298125|gb|EEY86039.1| tyrosine recombinase XerD [Acinetobacter radioresistens SH164] Length = 306 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 82/239 (34%), Positives = 131/239 (54%), Gaps = 9/239 (3%) Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q RS+ R+LS ++SF K+++++++ +++ + + K +LP+ L+E L Sbjct: 75 QGKSPRSIARTLSALRSFFKFMREQQLRSDNPVATHKTPKLGRALPKDLSE-----LDVE 129 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LLH + R+ A+L +LY CGLR++E L+L + I Q LRI GKG+K R+V Sbjct: 130 HLLHAPDINTALGLRDRAMLEVLYACGLRVTELLNLRLELINLKQGYLRITGKGNKERLV 189 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 PL + + +Y + L + LF G ++ F I++ G+ Sbjct: 190 PLGQVAIEWVEKYLNEARPQLYKSATDYLFLTQHGGIMSRQNFWYAIKRYALQAGIQAEL 249 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V M +++ HP Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQIR----MQQLHAAHHP 304 >gi|163755827|ref|ZP_02162945.1| integrase, site-specific recombinase [Kordia algicida OT-1] gi|161324348|gb|EDP95679.1| integrase, site-specific recombinase [Kordia algicida OT-1] Length = 295 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 87/299 (29%), Positives = 151/299 (50%), Gaps = 13/299 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 + + L++E+ S+ T+ +YE D R F F E+ +I + Y +IR +I Sbjct: 6 FTEYLKLEKNYSEHTVTAYEKDLRSFAEFCKKEYED----DSIINVHYVQIRNWIVSLVE 61 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + + ++ R +S +K++ KYL K K S + + LK + + ++K+ +D Sbjct: 62 KGLQNATINRKISSLKTYYKYLLKTKQIEASPLAKHKALKTAKKVQVPFSQKE----MDI 117 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 VL + + RN I+ + Y G+R SE ++L +I T+RI GK +K RIV Sbjct: 118 VLNAVEFKNDFEGVRNKTIIEMFYATGMRRSELINLKQSDIDYTAKTIRILGKRNKERIV 177 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 PLL + +A L+ Y L ++ + LF +G + + R I + Sbjct: 178 PLLQKL-EAQLKEYILHRKQIDNQKKEELFLTAKGNKIYSNLVYRLINDYFSIASTKVKK 236 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H LRH+FATHLL+ G DL +++ +LGH L++TQ+YT+ N + +Y + HP Sbjct: 237 SPHMLRHTFATHLLNQGADLNAVKELLGHASLASTQVYTH----NSLAELKNVYAKAHP 291 >gi|256821403|ref|YP_003145366.1| tyrosine recombinase XerC [Kangiella koreensis DSM 16069] gi|256794942|gb|ACV25598.1| tyrosine recombinase XerC [Kangiella koreensis DSM 16069] Length = 299 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 96/309 (31%), Positives = 158/309 (51%), Gaps = 20/309 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +L L E+ S+ T+ +Y RQ LAF + + +Q++ +IR I+KR Sbjct: 6 QRYLNRLLHEKRYSEHTVNNYR---RQLERLLAFCHDAGYS--NWQQITTQDIRMLIAKR 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q S LS ++ FL++L K T + + +R KK+ LP+ ++ V Sbjct: 61 HRQGASPSSSALQLSAMRRFLEFLLSEKKITVNPAVGVRGPKKAKRLPKNID-------V 113 Query: 139 D--NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 D N L E + I+ R+ A++ LLY G+R++E ++ ++ +LR+ GKG+K Sbjct: 114 DSLNHFLDQMPEDEPIEVRDKAMMELLYSSGIRLAELSAMDIDDLSFSDQSLRVLGKGNK 173 Query: 197 IRIVPLLPSVRKAI-LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 +R VP S +K + L + F N + + LF +G L Q+ + + LG Sbjct: 174 VREVPFGNSSKKVLSLWLKERNNFAKNSD-EKALFLSQQGNRLTNRAIQQRLAHWGKKLG 232 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 L H LRHS ATH+L + DLR++Q +LGH +STTQIYT+++ ++ + + YD Sbjct: 233 LNDRLHPHKLRHSCATHVLESSSDLRAVQELLGHASISTTQIYTHLDFQH----LAKTYD 288 Query: 316 QTHPSITQK 324 HP +K Sbjct: 289 AAHPRARKK 297 >gi|153004979|ref|YP_001379304.1| tyrosine recombinase XerD [Anaeromyxobacter sp. Fw109-5] gi|152028552|gb|ABS26320.1| tyrosine recombinase XerD [Anaeromyxobacter sp. Fw109-5] Length = 298 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 90/300 (30%), Positives = 151/300 (50%), Gaps = 15/300 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 ++ ++ +E+GL++ +++ Y D R+++ L + + I ++ EI+A + + Sbjct: 11 FVAHVRVEKGLAENSVEGYLRDLRRYVEHL-----DALGIGAWERVGRIEIQAHLGELVR 65 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + RS R+LS I+S + L K+T + + LP L+ + L Sbjct: 66 RGLSPRSQARALSAIRSLHRLLFAEKLTPVDAGDELDAPRPGRKLPELLSHDEIARL--- 122 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 L + R+ A+L LLY GLR+SE +SL ++ + L +GKG+K RIV Sbjct: 123 --LASPDPRSAAGLRDRAMLELLYATGLRVSELVSLGLNDVNLETRVLVARGKGNKERIV 180 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ +A+ Y + L LF RG L F + + + R G+ Sbjct: 181 PVGAPAAEAVKAYLAVGRERLLRGRRSKDLFVSPRGGRLTRQGFAKLLGRHARAAGIRRR 240 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H LRHSFATHLL G DLR++Q++LGH +STTQIYT+V+ + + +YD+ HP Sbjct: 241 ISPHKLRHSFATHLLEGGADLRAVQAMLGHADVSTTQIYTHVDRSH----VRRLYDRFHP 296 >gi|315607090|ref|ZP_07882094.1| integrase/recombinase XerD [Prevotella buccae ATCC 33574] gi|315251144|gb|EFU31129.1| integrase/recombinase XerD [Prevotella buccae ATCC 33574] Length = 313 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 90/302 (29%), Positives = 158/302 (52%), Gaps = 16/302 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ L++ER S+ T+++Y D + FL +E+ +LS ++ F + Sbjct: 22 KAYLRYLKLERNYSENTVEAYRHDLGYLMAFL----KERGLAAVDAELS--DMEEFAATL 75 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + RS R LSG++SF ++L+ + + + LP L+ ++ L Sbjct: 76 HEKNVSARSQSRILSGVRSFYRFLRLDGYMETDPTELLGSPQTGEHLPEYLSTEEVDLLE 135 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 ++ L +KW RN AI+ +L+ CGLR+SE ++L ++ ++ +R+ GKG+K R Sbjct: 136 GSIDL-----SKWEGQRNKAIIEVLFSCGLRVSELVNLKFSDLFPEEKFVRVIGKGNKER 190 Query: 199 IVPLLPS-VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ S +R+ L Y D + + +F RG L + I++ G+ Sbjct: 191 LVPISSSALRQLELWYMDRNLMTIKPGEEDYVFLNRRGHHLTRTMILIMIKRQAVAAGIK 250 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + + HTLRHSFAT LL G DLR+IQ++LGH + TT++YT++ + D EI + Sbjct: 251 KTISPHTLRHSFATALLKGGADLRAIQAMLGHESIGTTEVYTHLET---SDLRREILEH- 306 Query: 318 HP 319 HP Sbjct: 307 HP 308 >gi|153939513|ref|YP_001391125.1| tyrosine recombinase XerD [Clostridium botulinum F str. Langeland] gi|170757059|ref|YP_001781413.1| tyrosine recombinase XerD [Clostridium botulinum B1 str. Okra] gi|152935409|gb|ABS40907.1| tyrosine recombinase XerD [Clostridium botulinum F str. Langeland] gi|169122271|gb|ACA46107.1| tyrosine recombinase XerD [Clostridium botulinum B1 str. Okra] gi|295319169|gb|ADF99546.1| tyrosine recombinase XerD [Clostridium botulinum F str. 230613] Length = 291 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 85/301 (28%), Positives = 162/301 (53%), Gaps = 17/301 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +N++++L+ ++ LSK TL++Y D +F F+ E+ +++ T+ I AF+ Sbjct: 6 ENYIKDLQ-KKNLSKNTLEAYRRDVEKFSEFVRNREEKILSVDTV------TIMAFVQYL 58 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + S+ R++ I++F KYL K+ + +E L K ++P+ L+ ++ V Sbjct: 59 QREGRATSSIVRNIVSIRNFYKYLIKKNMVSEDPTLGYEIPKIERTIPKILSVEE----V 114 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D +L + K + R+ A+L L+Y G++I+E L+L +I + ++ +G + R Sbjct: 115 DKLLNSPNSSKKGL--RDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRER 172 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 I+P+ K + Y ++ P N+ LF ++G + F + I+ + + Sbjct: 173 IIPIGSYAIKCLKNYLEVRPAINVYNLDY-LFLNLKGTQMTRQGFWKIIKFYAKEASIDK 231 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 ++TLRHSFA HLL NG D++S+Q +LGH L+ TQIY++++ K+ + E+Y H Sbjct: 232 EIDSYTLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSK---IAEVYKNAH 288 Query: 319 P 319 P Sbjct: 289 P 289 >gi|126434558|ref|YP_001070249.1| site-specific tyrosine recombinase XerC [Mycobacterium sp. JLS] gi|166918889|sp|A3PXY1|XERC_MYCSJ RecName: Full=Tyrosine recombinase xerC gi|126234358|gb|ABN97758.1| tyrosine recombinase XerC subunit [Mycobacterium sp. JLS] Length = 300 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 86/298 (28%), Positives = 138/298 (46%), Gaps = 10/298 (3%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 Q L +ERG S T ++Y D R F+ +E+ + L+ +RA++S + Sbjct: 10 QYLALERGRSDHTRRAYLGDLRSLFAFV----DERTPGADLGSLTLPVLRAWLSAQAAAG 65 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 +L R S +K+F + +R + ++ K +LP L + QA +D Sbjct: 66 TARTTLARRTSAVKTFTAWAVRRGLMASDPATRLQMPKARRTLPAVLRQDQARDALDAAN 125 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202 + + + R+ I+ +LY G+R+SE L ++ + LR+ GKGDK R VP Sbjct: 126 -SGAQQGDPLALRDRLIVEMLYATGIRVSELCGLDIDDVDTSRRLLRVLGKGDKQRTVPF 184 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 +A+ + L P L G RG+ L+P + + + + Sbjct: 185 GEPAEQALRAWLTSGRPALATAESGPALLLGARGRRLDPRQARTVVHETVGAVAGAPDIG 244 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHS ATHLL G DLR +Q +LGH L+TTQ+YT+V + ++DQ HP Sbjct: 245 PHGLRHSAATHLLEGGADLRIVQELLGHSTLATTQLYTHVTVAR----LRAVHDQAHP 298 >gi|95929339|ref|ZP_01312082.1| phage integrase [Desulfuromonas acetoxidans DSM 684] gi|95134455|gb|EAT16111.1| phage integrase [Desulfuromonas acetoxidans DSM 684] Length = 297 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 96/311 (30%), Positives = 157/311 (50%), Gaps = 22/311 (7%) Query: 20 NWLQN----LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 WL L +ER L+ T +Y D + F F+ E++ + + +R ++ Sbjct: 3 TWLDEFSRYLSVERNLASHTQTAYLRDVQAFCDFICGEHREQLKT-LLPAVEKHTLRRWM 61 Query: 76 SK--RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 ++ + +K+ ++ R ++ I+SF +L+++ + L +R + LP L+ Sbjct: 62 AQLLKNNKKV---TVARKVASIRSFYSFLQRQGHVEHNPALQVRLPRVERYLPTTLDVDY 118 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L+D ++ R+ A LLY GLR+ E ++L ++ DQ+ +R+ GK Sbjct: 119 MYHLLD-----APGDSTLQSLRDRAAFELLYSSGLRVGELVALNVADLDFDQALVRVLGK 173 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 G K RIVP+ +A++ Y + PL +G L+ QR +++ Sbjct: 174 GGKQRIVPVGSKALQALMAYLERRGVT---ERDEPLLVNRQGTRLSARTVQRNLKKKLLQ 230 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 LGLP + T H+LRHSFATHLL G DLR+IQ +LGH LSTTQ YT V++ D MM+ Sbjct: 231 LGLPTTATPHSLRHSFATHLLDEGADLRAIQEMLGHQSLSTTQKYTQVST----DRMMKE 286 Query: 314 YDQTHPSITQK 324 YD+ HP +K Sbjct: 287 YDRAHPRSRKK 297 >gi|210633132|ref|ZP_03297699.1| hypothetical protein COLSTE_01612 [Collinsella stercoris DSM 13279] gi|210159286|gb|EEA90257.1| hypothetical protein COLSTE_01612 [Collinsella stercoris DSM 13279] Length = 305 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 88/314 (28%), Positives = 144/314 (45%), Gaps = 20/314 (6%) Query: 11 SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70 S LL +++ +L G S T+++Y + + A + + T + Sbjct: 5 SARLLGLIDDYIAHLSRFEGASSETVRAYTQHLEAYARWAARAGRDGLAPST------RD 58 Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 +RA++S+ R R++ LS I+SF ++L + + + + K LP L Sbjct: 59 VRAYLSELRAAGYAARTVAAHLSSIRSFFRWLSDEGLAGADPVTAIASPKLDRPLPHVLA 118 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 Q L+D L ++ R++A+L L G RISE +L ++ ++++R+ Sbjct: 119 PDQLARLMDAPDLASAGGK-----RDAAMLELFIATGARISELAALDLADVDVSRASVRL 173 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245 GKG K R+VPL Y + L + + F RG+P++ + Sbjct: 174 FGKGSKERLVPLYDRACSVCARYLEEGRGELLGRGAASSREASFFISDRGRPMSASSLRH 233 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 L+R G+P T H +RH+FAT LL G DLRS+Q +LGH LSTTQIYT++ Sbjct: 234 RFDALKRRAGIPADITPHAMRHTFATELLIGGADLRSVQELLGHASLSTTQIYTHLTP-- 291 Query: 306 GGDWMMEIYDQTHP 319 D + Q HP Sbjct: 292 --DRLKSAVHQAHP 303 >gi|226949108|ref|YP_002804199.1| tyrosine recombinase XerD [Clostridium botulinum A2 str. Kyoto] gi|226843555|gb|ACO86221.1| tyrosine recombinase XerD [Clostridium botulinum A2 str. Kyoto] Length = 291 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 85/301 (28%), Positives = 161/301 (53%), Gaps = 17/301 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +N++++L+ ++ LSK TL++Y D +F F+ E+ +++ T+ I AF+ Sbjct: 6 ENYIKDLQ-KKNLSKNTLEAYRRDVEKFSEFVRNREEKILSVDTV------TIMAFVQYL 58 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + S+ R++ I++F KYL K+ + +E L K ++P+ L+ ++ V Sbjct: 59 QREGRATSSIVRNIVSIRNFYKYLIKKNMVSEDPTLGYEIPKIERTIPKILSVEE----V 114 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D +L K + R+ A+L L+Y G++I+E L+L +I + ++ +G + R Sbjct: 115 DKLLNSPDSSKKGL--RDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRER 172 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 I+P+ K + Y ++ P N+ LF ++G + F + I+ + + Sbjct: 173 IIPIGSYAIKCLKNYLEVRPAINVYNLDY-LFLNLKGTQMTRQGFWKIIKFYAKEASIDK 231 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 ++TLRHSFA HLL NG D++S+Q +LGH L+ TQIY++++ K+ + E+Y H Sbjct: 232 EIDSYTLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSK---IAEVYKNAH 288 Query: 319 P 319 P Sbjct: 289 P 289 >gi|307246735|ref|ZP_07528805.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255720|ref|ZP_07537524.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307260172|ref|ZP_07541882.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306852435|gb|EFM84670.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306861397|gb|EFM93387.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865818|gb|EFM97696.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 336 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 91/305 (29%), Positives = 160/305 (52%), Gaps = 19/305 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L IE+ S+ TL +Y+ RQ L ++ I+ T ++++ +R I++ Q +G Sbjct: 49 LRIEKQASQHTLSNYQ---RQLLAVSDMLSQAGIS--TWQEVNSATVRWIIAQSNKQGLG 103 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 +S+ L ++ + YL +++ + + + ++ K S LP+ ++ +QA + +L Sbjct: 104 AKSIALRLVALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQA----EQLLTS 159 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 SHE D R+ A++ L+Y GLR+SE L ++ +R+ GKG+K RIVP+ Sbjct: 160 DSHEPS--DLRDLAMMELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGS 217 Query: 205 SVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 +A+ + + F N +F RG L+ Q +++ GL H Sbjct: 218 KALEALNRWLAVRNQFKPQDN---AVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPH 274 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323 LRHSFATH+L GDLR++Q +LGH L+TTQIYT+++ ++ + +IYD HP + Sbjct: 275 KLRHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQH----LAKIYDAAHPRAKR 330 Query: 324 KDKKN 328 K + + Sbjct: 331 KKQDD 335 >gi|229817386|ref|ZP_04447668.1| hypothetical protein BIFANG_02648 [Bifidobacterium angulatum DSM 20098] gi|229785175|gb|EEP21289.1| hypothetical protein BIFANG_02648 [Bifidobacterium angulatum DSM 20098] Length = 324 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 86/314 (27%), Positives = 153/314 (48%), Gaps = 29/314 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 ++ ++++ERGLSK T+ +Y D ++ ++L + I +S + +I+ + Sbjct: 22 FIAHIDVERGLSKATVTAYTSDLDRYCVWL-----REAGITEPASISRNHVEEYIAHLDS 76 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD- 139 RS R+L+ I F ++ + + ++ K +++LP L + L+D Sbjct: 77 HGASARSKARNLASIHEFHRFALAQHAVADDVSAAVKAPKGASTLPDVLTVDEVARLLDC 136 Query: 140 ------NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 ++ H + R+ A+L +Y G R+SEA+ +I ++ R+ GK Sbjct: 137 APVPAPGCVMDVPHA---VLMRDKALLEFMYATGCRVSEAVGTDLNDIDLNERVARLLGK 193 Query: 194 GDKIRIVPLLPSVRKAILEYYD--LCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYI 247 G K R+VP+ A+ Y D + + P +F RG+ ++ + Sbjct: 194 GSKQRLVPVGEYACAAMTRYLDEGRSLLEGCAKSKAPERSAVFLNKRGQRMSRQSVWEVV 253 Query: 248 RQL--RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 Q R ++G PL HTLRHSFATHL+ G D+R++Q +LGH ++TTQIYT+V+ +N Sbjct: 254 NQAGKRAHIGKPLHP--HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPEN 311 Query: 306 GGDWMMEIYDQTHP 319 ++E Y HP Sbjct: 312 ----LIETYLTAHP 321 >gi|288926604|ref|ZP_06420520.1| integrase/recombinase XerD [Prevotella buccae D17] gi|288336626|gb|EFC74996.1| integrase/recombinase XerD [Prevotella buccae D17] Length = 304 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 85/288 (29%), Positives = 153/288 (53%), Gaps = 12/288 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ L++ER S+ T+++Y D + FL +E+ +LS ++ F + Sbjct: 13 KAYLRYLKLERNYSENTVEAYRHDLGYLMAFL----KERGLAAVDAELS--DMEEFAATL 66 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + RS R LSG++SF ++L+ + + + LP L+ ++ L Sbjct: 67 HEKNVSARSQSRILSGVRSFYRFLRLDGYMETDPTELLGSPQTGEHLPEYLSTEEVDLLE 126 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 ++ L +KW RN AI+ +L+ CGLR+SE ++L ++ ++ +R+ GKG+K R Sbjct: 127 GSIDL-----SKWEGQRNKAIIEVLFSCGLRVSELVNLKFSDLFPEEKFVRVIGKGNKER 181 Query: 199 IVPLLPS-VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ S +R+ L Y D + + +F RG L + I++ G+ Sbjct: 182 LVPISSSALRQLELWYMDRNLMTIKPGEEDYVFLNRRGHHLTRTMILIMIKRQAVAAGIK 241 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + + HTLRHSFAT LL G DLR+IQ++LGH + TT++YT++ + + Sbjct: 242 KTISPHTLRHSFATALLKGGADLRAIQAMLGHESIGTTEVYTHLETSD 289 >gi|89890506|ref|ZP_01202016.1| tyrosine recombinase XerD [Flavobacteria bacterium BBFL7] gi|89517421|gb|EAS20078.1| tyrosine recombinase XerD [Flavobacteria bacterium BBFL7] Length = 298 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 92/303 (30%), Positives = 155/303 (51%), Gaps = 16/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L +ER L+ TL++Y D + +L I+I +++ +R +I + Sbjct: 8 KDFLTYSRLERSLADNTLKAYSRDLHKLNNWLL---ANDISISPT-EINSNILRDYIYEL 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + RS R+LS +K F YL ++ + + + K LP L+ ++ L+ Sbjct: 64 -AKNVSSRSQARALSSLKVFFNYLILEDYRKDNPLELIESPKIGRKLPDTLSTQEIDALI 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 +++ T H RN AIL LYGCGLR+SE +L ++ + +++ GKGDK R Sbjct: 123 NSIDRSTPH-----GERNRAILETLYGCGLRVSELTTLKISDLFFQEGFIKVTGKGDKQR 177 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +P+ K I Y + L + Q +F RG L + I++L+ G+ Sbjct: 178 FIPIGDFTIKVINLYINEIRPHLPIKPQHTDTVFLNRRGAGLTRAMIFHIIKELKVKAGI 237 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + HT RHSFATHLL NG DLRSIQ +LGH ++TT+IY +V+ + + ++ ++ Sbjct: 238 TKKISPHTFRHSFATHLLENGADLRSIQMMLGHESITTTEIYMHVDRAH----LTKVMEK 293 Query: 317 THP 319 HP Sbjct: 294 HHP 296 >gi|326403661|ref|YP_004283743.1| tyrosine recombinase XerD [Acidiphilium multivorum AIU301] gi|325050523|dbj|BAJ80861.1| tyrosine recombinase XerD [Acidiphilium multivorum AIU301] Length = 320 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 91/315 (28%), Positives = 155/315 (49%), Gaps = 26/315 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+++ ERG ++ T+ +Y+ D F F A + + ++ Sbjct: 24 EAFLESMVAERGAARNTILAYQADLADFAAFCASRGHGPA------EADAASVADYLGGL 77 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 T + R+ R LS ++ F ++L + + + K + +LP+ ++E + V Sbjct: 78 ATAGLSARTQARRLSSLRQFQRFLLRDGQRADDPTALTSSPKLARTLPKTISEAE----V 133 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D +L + A L +LY G+RISE L L + D S L I+GKG + R Sbjct: 134 DALLTAAAAMPGQAGRVAEAGLEILYATGMRISELLVLPANALSTDASALLIKGKGGRER 193 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIR-GKPLNPGVFQRYIRQLRRYL 254 IVPL + R A ++ N + P LF G R G P+ F R ++++ Sbjct: 194 IVPLSAAARDAAARLREM-------NRKRPSRHLFPGRRMGFPMTRQAFARQLKRVAVMA 246 Query: 255 GL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ P + H+LRH+FATHLL+ G DLRS+Q++LGH +STTQIYT+V + + + ++ Sbjct: 247 GIHPARVSPHSLRHAFATHLLARGADLRSLQTLLGHADISTTQIYTHVLA----ERLQKL 302 Query: 314 YDQTHPSITQKDKKN 328 ++ HP T ++ Sbjct: 303 VEEHHPLATPPGRRK 317 >gi|145628659|ref|ZP_01784459.1| tyrosine recombinase [Haemophilus influenzae 22.1-21] gi|144979129|gb|EDJ88815.1| tyrosine recombinase [Haemophilus influenzae 22.1-21] gi|309972530|gb|ADO95731.1| Site-specific, tyrosine recombinase XerD [Haemophilus influenzae R2846] Length = 297 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 89/295 (30%), Positives = 152/295 (51%), Gaps = 17/295 (5%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 IE+GLS+ T+QSY D +L + ++++T L +++ F+ +R + Sbjct: 16 IEKGLSENTVQSYRLDLTALCDWL---DKNDLSLET---LDAVDLQGFLGERLEKGYKAT 69 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R LS ++ +YL + K + + + K + LP+ L E+Q + LL+T Sbjct: 70 STARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQV-----SDLLNTP 124 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 ++ R+ A+L LLY GLR++E +SLT +N+ Q +R+ GKG+K RIVP+ Sbjct: 125 DVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184 Query: 207 RKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHT 264 + ++ P LN +F R + + F ++ + + H Sbjct: 185 AYWVRQFMLYGRPVLLNGQSSDVVFPSQRTQQMTRQTFWHRVKHYAILADIDADALSPHV 244 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LRH+FATHL+++G DLR +Q +LGH LSTTQIYT+V + + ++++ HP Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER----LKRLHERFHP 295 >gi|302335678|ref|YP_003800885.1| integrase family protein [Olsenella uli DSM 7084] gi|301319518|gb|ADK68005.1| integrase family protein [Olsenella uli DSM 7084] Length = 308 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 90/315 (28%), Positives = 151/315 (47%), Gaps = 40/315 (12%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L +L + R LS+ T+++Y D L A +T + + + ++++++RA++ + Sbjct: 17 RRFLSDLSVTRNLSENTIRAYGTD----LAAYARWTRRQ-GVDPL-DVTHSQLRAYLGEL 70 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + R+L R LS I++ ++L + T + + + K + +LP+ + + L Sbjct: 71 VRARYSSRTLNRRLSAIRTLYRWLVREGYTNKDAAAAIASPKVARTLPKTMTDPDVCQL- 129 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L E I R+ A++ LLY G RISE L +I ++ + + GKG K R Sbjct: 130 ----LGACDEDGVIGLRDRALIELLYASGARISEISRLDVGDIDRERRQVTLLGKGGKER 185 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNL--------------NIQLPLFRGIRGKPLNPGVFQ 244 IVPL YD+C +L+ LF RG+ ++ + Sbjct: 186 IVPL-----------YDMCIDELDAYLLTARPALVVRGEGASEALFVSTRGRRMSAAALR 234 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + R GL T H +RH++AT LLS G DLRS+Q +LGH LSTTQIYT+++ Sbjct: 235 EAFERRVRLAGLDADITPHAMRHTYATELLSGGADLRSVQELLGHSSLSTTQIYTHLSV- 293 Query: 305 NGGDWMMEIYDQTHP 319 D + Q HP Sbjct: 294 ---DRLKAAARQAHP 305 >gi|22127152|ref|NP_670575.1| site-specific tyrosine recombinase XerD [Yersinia pestis KIM 10] gi|45443323|ref|NP_994862.1| site-specific tyrosine recombinase XerD [Yersinia pestis biovar Microtus str. 91001] gi|51597478|ref|YP_071669.1| site-specific tyrosine recombinase XerD [Yersinia pseudotuberculosis IP 32953] gi|108806374|ref|YP_650290.1| site-specific tyrosine recombinase XerD [Yersinia pestis Antiqua] gi|108813251|ref|YP_649018.1| site-specific tyrosine recombinase XerD [Yersinia pestis Nepal516] gi|145597930|ref|YP_001162006.1| site-specific tyrosine recombinase XerD [Yersinia pestis Pestoides F] gi|150260097|ref|ZP_01916825.1| integrase/recombinase [Yersinia pestis CA88-4125] gi|153948372|ref|YP_001399863.1| site-specific tyrosine recombinase XerD [Yersinia pseudotuberculosis IP 31758] gi|162418404|ref|YP_001608154.1| site-specific tyrosine recombinase XerD [Yersinia pestis Angola] gi|165924857|ref|ZP_02220689.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str. F1991016] gi|165937373|ref|ZP_02225937.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str. IP275] gi|166010314|ref|ZP_02231212.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str. E1979001] gi|166212682|ref|ZP_02238717.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str. B42003004] gi|167399752|ref|ZP_02305270.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418760|ref|ZP_02310513.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425367|ref|ZP_02317120.1| tyrosine recombinase XerD [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170023169|ref|YP_001719674.1| site-specific tyrosine recombinase XerD [Yersinia pseudotuberculosis YPIII] gi|186896598|ref|YP_001873710.1| site-specific tyrosine recombinase XerD [Yersinia pseudotuberculosis PB1/+] gi|218928065|ref|YP_002345940.1| site-specific tyrosine recombinase XerD [Yersinia pestis CO92] gi|229837578|ref|ZP_04457740.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A] gi|229840801|ref|ZP_04460960.1| site-specific tyrosine recombinase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842640|ref|ZP_04462795.1| site-specific tyrosine recombinase [Yersinia pestis biovar Orientalis str. India 195] gi|229903707|ref|ZP_04518820.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516] gi|270487486|ref|ZP_06204560.1| tyrosine recombinase XerD [Yersinia pestis KIM D27] gi|294502941|ref|YP_003567003.1| tyrosine recombinase [Yersinia pestis Z176003] gi|34222946|sp|Q8ZHK1|XERD_YERPE RecName: Full=Tyrosine recombinase xerD gi|21960213|gb|AAM86826.1|AE013928_11 site-specific recombinase [Yersinia pestis KIM 10] gi|45438192|gb|AAS63739.1| integrase/recombinase [Yersinia pestis biovar Microtus str. 91001] gi|51590760|emb|CAH22405.1| Probable site-specific integrase/recombinase [Yersinia pseudotuberculosis IP 32953] gi|108776899|gb|ABG19418.1| tyrosine recombinase XerD subunit [Yersinia pestis Nepal516] gi|108778287|gb|ABG12345.1| tyrosine recombinase XerD subunit [Yersinia pestis Antiqua] gi|115346676|emb|CAL19559.1| integrase/recombinase [Yersinia pestis CO92] gi|145209626|gb|ABP39033.1| tyrosine recombinase XerD subunit [Yersinia pestis Pestoides F] gi|149289505|gb|EDM39582.1| integrase/recombinase [Yersinia pestis CA88-4125] gi|152959867|gb|ABS47328.1| tyrosine recombinase XerD [Yersinia pseudotuberculosis IP 31758] gi|162351219|gb|ABX85167.1| tyrosine recombinase XerD [Yersinia pestis Angola] gi|165914847|gb|EDR33460.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str. IP275] gi|165923057|gb|EDR40208.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str. F1991016] gi|165990800|gb|EDR43101.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str. E1979001] gi|166205974|gb|EDR50454.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str. B42003004] gi|166962754|gb|EDR58775.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050460|gb|EDR61868.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055767|gb|EDR65551.1| tyrosine recombinase XerD [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749703|gb|ACA67221.1| tyrosine recombinase XerD [Yersinia pseudotuberculosis YPIII] gi|186699624|gb|ACC90253.1| tyrosine recombinase XerD [Yersinia pseudotuberculosis PB1/+] gi|229679477|gb|EEO75580.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516] gi|229690950|gb|EEO83004.1| site-specific tyrosine recombinase [Yersinia pestis biovar Orientalis str. India 195] gi|229697167|gb|EEO87214.1| site-specific tyrosine recombinase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229704266|gb|EEO91277.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A] gi|262360976|gb|ACY57697.1| tyrosine recombinase [Yersinia pestis D106004] gi|262364916|gb|ACY61473.1| tyrosine recombinase [Yersinia pestis D182038] gi|270335990|gb|EFA46767.1| tyrosine recombinase XerD [Yersinia pestis KIM D27] gi|294353400|gb|ADE63741.1| tyrosine recombinase [Yersinia pestis Z176003] gi|320014032|gb|ADV97603.1| site-specific tyrosine recombinase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 299 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 91/303 (30%), Positives = 156/303 (51%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ER L++ TL SY D + +L + + + + S ++++F+++R Sbjct: 10 EQFLDALWLERNLAENTLASYRLDLHALVGWLTHHNSDLL------RASPQDLQSFLAER 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K+ + + + K LP+ L+E Q Sbjct: 64 IEGGYKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQV---- 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + LL++ + ++ R+ A+L +LY GLR+SE + LT ++ Q +R+ GKG+K R Sbjct: 120 -DALLNSPNVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKER 178 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL I Y + P+ +N LF R + + F I+ G+ Sbjct: 179 LVPLGEEAVYWIENYMEHGRPWLVNGASLDVLFPSNRSQQMTRQTFWHRIKHYAILAGID 238 Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Q Sbjct: 239 SERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQ 294 Query: 317 THP 319 HP Sbjct: 295 HHP 297 >gi|325299547|ref|YP_004259464.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170] gi|324319100|gb|ADY36991.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170] Length = 316 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 88/283 (31%), Positives = 145/283 (51%), Gaps = 12/283 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 + Q L++ER LS T+ +Y D + L A+ T E I I + + ++ F + Sbjct: 24 YRQYLKLERSLSGNTIDAYLTDLDKLL---AYLTLEGIGITDV---TLQDLENFSAGLHD 77 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 I RS R LSGI+SF ++L + + + + LP L ++ L+ Sbjct: 78 IGIHPRSQARILSGIRSFFRFLTLDDYIRQDPSELLESPQIGKHLPDVLTVEEIDALIGA 137 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + ET RN AIL LY CGLR+SE +L ++ D+ ++++GKG K R+V Sbjct: 138 I-----DETTPEGQRNRAILETLYSCGLRVSELCNLKLSDLYLDEGFIKVEGKGSKQRLV 192 Query: 201 PLLPSVRKAILEYYDLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ P + Y+ + + + +F GK ++ + I++L +GL + Sbjct: 193 PISPRAVNELKNYFTERGYAKIKPGYEDFVFISRFGKNISRIMVFHIIKELAERIGLKKT 252 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + HT RHSFATHLL G +LR+IQ++LGH + TT+IYT+++ Sbjct: 253 ISPHTFRHSFATHLLEGGANLRAIQAMLGHESIGTTEIYTHID 295 >gi|284923919|emb|CBG37018.1| tyrosine recombinase [Escherichia coli 042] gi|320176053|gb|EFW51122.1| Tyrosine recombinase XerC [Shigella dysenteriae CDC 74-1112] Length = 298 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 92/307 (29%), Positives = 155/307 (50%), Gaps = 17/307 (5%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L + + +L+ L +ER LS +TL +Y+ RQ + F +E +Q+ +Q T +R Sbjct: 3 DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIINFASEN--GLQSWQQCDVTMVR 57 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 +F + R + +G SL LS ++SF +L + + + K LP+ ++ Sbjct: 58 SFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 L+D + + R+ A+L ++YG GLR+SE + L +++ + + + G Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 KG K R +P+ + I + DL DL + LF GK ++ Q+ + Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 GL H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ + Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285 Query: 313 IYDQTHP 319 +YD HP Sbjct: 286 VYDAAHP 292 >gi|145640252|ref|ZP_01795836.1| tyrosine recombinase [Haemophilus influenzae R3021] gi|145274838|gb|EDK14700.1| tyrosine recombinase [Haemophilus influenzae 22.4-21] Length = 297 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 89/295 (30%), Positives = 152/295 (51%), Gaps = 17/295 (5%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 IE+GLS+ T+QSY D +L + ++++T L +++ F+ +R + Sbjct: 16 IEKGLSENTVQSYRLDLTALCDWL---DKNDLSLET---LDSVDLQGFLGERLEKGYKAT 69 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R LS ++ +YL + K + + + K + LP+ L E+Q + LL+T Sbjct: 70 STARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQV-----SDLLNTP 124 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 ++ R+ A+L LLY GLR++E +SLT +N+ Q +R+ GKG+K RIVP+ Sbjct: 125 DVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184 Query: 207 RKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHT 264 + ++ P LN +F R + + F ++ + + H Sbjct: 185 AYWVRQFMLYGRPVLLNGQSSDVVFPSQRTQQMTRQTFWHRVKHYAILADIDADALSPHV 244 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LRH+FATHL+++G DLR +Q +LGH LSTTQIYT+V + + ++++ HP Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER----LKRLHERFHP 295 >gi|110680280|ref|YP_683287.1| tyrosine recombinase XerD [Roseobacter denitrificans OCh 114] gi|109456396|gb|ABG32601.1| tyrosine recombinase XerD [Roseobacter denitrificans OCh 114] Length = 323 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 94/290 (32%), Positives = 144/290 (49%), Gaps = 18/290 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ E G ++ TL +Y D + F +L T + T + ++ A++ Sbjct: 11 FLEAQAAELGAARNTLLAYGRDLKDFEGYLHHRTLDFATA------TQGDVEAYLIACDA 64 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q + + R LS +K ++ + +++ L + + LP+ L+E + L++ Sbjct: 65 QGLSKATRARRLSAVKQLYRFAFEEGWRSDNPALQITGPGRDRKLPKTLSEAEVDRLLEA 124 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 TS ARN+ ++ LLY G+R+SE +SL D L I+GKG K R+V Sbjct: 125 A--RTSGRNAADRARNTCLMELLYATGMRVSELVSLPVSAARGDPRMLLIRGKGGKERMV 182 Query: 201 PLLPSVRKAILEYY---DLCPFDLNLNIQLP---LF--RGIRGKPLNPGVFQRYIRQLRR 252 PL P R A E+ D P LF RG+ G L F I++L Sbjct: 183 PLSPPARDATSEWLQLRDEKEAQKKTEGHPPSRFLFASRGVSGH-LTRHRFYLLIKELAV 241 Query: 253 YLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G+ P T HTLRH+FATHLL+NG DLRSIQ++LGH ++TT+IYT+V Sbjct: 242 NAGVSPSKVTPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHV 291 >gi|91226786|ref|ZP_01261439.1| tyrosine recombinase [Vibrio alginolyticus 12G01] gi|269964519|ref|ZP_06178759.1| tyrosine recombinase [Vibrio alginolyticus 40B] gi|91188917|gb|EAS75201.1| tyrosine recombinase [Vibrio alginolyticus 12G01] gi|269830756|gb|EEZ84975.1| tyrosine recombinase [Vibrio alginolyticus 40B] Length = 305 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 93/305 (30%), Positives = 154/305 (50%), Gaps = 21/305 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA--FYTEEKITIQTIRQLSYTEIRAFIS 76 + +L + +ERGLS+ TL SY D + L+++ Y + I++ +++ Y + Sbjct: 16 EQFLDAMWMERGLSENTLASYRNDLMKLLVWMEKHRYRLDFISLSGLQE--YQSHLVDLD 73 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 ++T + R LS I+ +YL + K+ + + + K LP+ ++E+Q Sbjct: 74 YKQTSR------ARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQV-- 125 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 + LL I+ R+ A+L LLY GLR++E +SLT +N+ Q +R+ GKG K Sbjct: 126 ---DALLEAPDPNDPIELRDKAMLELLYATGLRVTELVSLTMENVSLRQGVVRVTGKGGK 182 Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 R+VP+ + I + P L +F R + + F I+ G Sbjct: 183 ERLVPMGENAVDWIETFIQQGRPALLGDTSSDIVFPSKRARQMTRQTFWHRIKYYALIAG 242 Query: 256 LPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 + + H LRH+FATHLL+ G DLR +Q +LGH LSTTQIYT+V ++ + +I+ Sbjct: 243 IDTDQLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIH 298 Query: 315 DQTHP 319 Q HP Sbjct: 299 SQHHP 303 >gi|325103648|ref|YP_004273302.1| tyrosine recombinase XerD [Pedobacter saltans DSM 12145] gi|324972496|gb|ADY51480.1| tyrosine recombinase XerD [Pedobacter saltans DSM 12145] Length = 299 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 96/307 (31%), Positives = 159/307 (51%), Gaps = 19/307 (6%) Query: 17 ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 E++ + L++ER LS ++ +Y D + + FL+ + K ++ +++ ++R FI Sbjct: 6 EKKGFESYLKLERSLSPNSVNAYVNDVDKLVQFLSVQSNPK----SLLKVNTQDLRNFIK 61 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + + R +SGIKSF KYL + + + K LP L + T Sbjct: 62 WINEFGLIASTQSRIISGIKSFYKYLLLEDLIEHDPADIIESPKIRRKLPEVLTVHEINT 121 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 ++D L +K + RN A+L +LY GLR+SE +L ++ + +++ GKG+K Sbjct: 122 MLDGFDL-----SKPENIRNKAMLEILYSSGLRVSELTNLKLSDLYRELEFVKVVGKGNK 176 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRR 252 R+VP+ S K LE Y L LNIQ +F RG L+ + I+ L Sbjct: 177 ERLVPVGSSALKH-LEIY-LENIRNKLNIQKGNEDIIFLNKRGSKLSRVMVFMIIKDLAT 234 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 +G+ + + HT RHSFATHL+ G DLR+IQ +LGH ++TT+IYT+++ D++ + Sbjct: 235 AVGIKKNISPHTFRHSFATHLIEGGADLRAIQEMLGHESITTTEIYTHLDR----DFLKQ 290 Query: 313 IYDQTHP 319 Q HP Sbjct: 291 TITQFHP 297 >gi|237721804|ref|ZP_04552285.1| integrase [Bacteroides sp. 2_2_4] gi|299144803|ref|ZP_07037871.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_23] gi|229448673|gb|EEO54464.1| integrase [Bacteroides sp. 2_2_4] gi|298515294|gb|EFI39175.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_23] Length = 319 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 95/293 (32%), Positives = 150/293 (51%), Gaps = 27/293 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + Q L++E+ LS TL +Y D + + FL T E I + + ++++ F + Sbjct: 18 RKYQQYLKLEKSLSLNTLDAYLTDLDKLMSFL---TLEGINVLDV---CLSDLQRFAAGL 71 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 I RS R LSGIKSF ++L + K LP L ++ ++ Sbjct: 72 HDIGIHPRSQARILSGIKSFFRFLILENYLEADPSELLEGPKIGFKLPEVLTVEEIDRII 131 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 V +K RN AIL LY CGLR+SE ++L ++ D+ ++++GKG K R Sbjct: 132 SAV-----DRSKAEGQRNRAILETLYSCGLRVSELITLKLSDLYFDEGFIKVEGKGSKQR 186 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI---------RGKPLNPGVFQRYIRQ 249 +VP+ P +AI E P D N Q+ + +G RGK L+ + I++ Sbjct: 187 LVPISP---RAINEIKLYIP-DRN---QIEVKKGHEDFVFVSQRRGKGLSRIMIFHMIKE 239 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 L G+ + + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ Sbjct: 240 LAEKAGITKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHID 292 >gi|325960047|ref|YP_004291513.1| tyrosine recombinase xerC [Methanobacterium sp. AL-21] gi|325331479|gb|ADZ10541.1| Tyrosine recombinase xerC [Methanobacterium sp. AL-21] Length = 331 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 85/235 (36%), Positives = 125/235 (53%), Gaps = 30/235 (12%) Query: 92 LSGIKSFLKYLKKRKITTESNIL-------------------NMRNLKKSNSLPRALNEK 132 L K +++YLK+ K +++ I +++ K++ SLP++LNE Sbjct: 89 LRAFKRYIRYLKREKNVSQNYIYLVTVVVKKFFEFGGIGVLKDVQTPKRTKSLPKSLNEN 148 Query: 133 QALTLVDNVLLHT-----SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 + L+L+ N + H S ++++ RN IL LLY GLR+SE ++L + T Sbjct: 149 EILSLI-NAMDHDKDDYLSETSEFLRLRNKVILALLYSSGLRVSELVTLHSDSFDLTDRT 207 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 +RI+GKG+K RIV L K +LE Y + + LF G L P Q I Sbjct: 208 IRIRGKGEKDRIV-LFDEQTKELLEGY----LQVRGDHSDYLFVNRSGNHLTPRYIQMMI 262 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + + G+ T H LRHSFATHLL NG D+R+IQ +LGH LSTTQIYT+V+ Sbjct: 263 KDYAKAAGIKKKVTPHILRHSFATHLLKNGVDIRAIQQLLGHSNLSTTQIYTSVD 317 >gi|242279145|ref|YP_002991274.1| integrase family protein [Desulfovibrio salexigens DSM 2638] gi|242122039|gb|ACS79735.1| integrase family protein [Desulfovibrio salexigens DSM 2638] Length = 307 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 96/308 (31%), Positives = 150/308 (48%), Gaps = 20/308 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +LQ +ER LS LTLQ+Y D QF + E I I IR ++S Sbjct: 8 KTFLQYCSLERSLSSLTLQAYRKDLSQFGETIDLNNVEVINIDK------ESIRTYLSNI 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTL 137 ++LKR L+ +KSF +L++ + S + + +S LP+ + E + Sbjct: 62 -NHNYKPKTLKRKLATLKSFFNFLEREDLIPFSPFRKLHIKIDRSKELPKIIKETSLSRI 120 Query: 138 VDNVLL------HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 + L H S + I R+ ++ LL+ G+R+SE S++P I L I Sbjct: 121 LKYAYLEKEKFDHKSKAYREI-TRDICVIELLFATGIRVSELCSISPSEIDLKNKKLIIN 179 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 GKG+K R++PL + IL+ Y L + L+ F KPL+ +R I++ Sbjct: 180 GKGNKQRLIPLCENNSLKILKEYSLL-YQYALHDSTSFFLNRDLKPLSDQSVRRIIKKYS 238 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 G+ + T H RH+ AT LL NG D+R+IQ++LGH LS T+IYT+V+ + D Sbjct: 239 EIAGVTETITPHMFRHTIATMLLENGVDIRNIQTLLGHSSLSVTEIYTHVSLSSQRD--- 295 Query: 312 EIYDQTHP 319 I + HP Sbjct: 296 -ILAKKHP 302 >gi|84498372|ref|ZP_00997169.1| tyrosine recombinase [Janibacter sp. HTCC2649] gi|84381872|gb|EAP97755.1| tyrosine recombinase [Janibacter sp. HTCC2649] Length = 325 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 88/306 (28%), Positives = 146/306 (47%), Gaps = 17/306 (5%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFL--------AFYTEEKITIQTIRQLSYTEIRAF 74 ++L +ER S T+++Y D R FL + + +Q IR ++RA+ Sbjct: 26 RHLRLERSRSPHTVRAYLADLRDFLAHVDGEGANEGGTPRAPQTALQDIR---LADLRAW 82 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 + S+ R + +++F + ++ L + K+ +LP L + A Sbjct: 83 LGVLAAAGAARSSVARRSASLRTFFGWATRQGHVDVDPSLRLVAPKRHRTLPPVLAKDDA 142 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 L+D V + + + RN A+L LLY G+R+ E L ++ + +R+ GKG Sbjct: 143 AGLLD-VAAVAADDNDPVHVRNRAVLELLYATGVRVGELTGLDIDDVDFHSNVVRVIGKG 201 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRY 253 DK R VP R A+ ++ D+ L ++ P LF G RG+ ++P + + + + Sbjct: 202 DKERRVPFGGPARSALAKWLDVGRPRLVVDGSGPGLFLGQRGRRIDPRQVRTLVHDMLTH 261 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 + H LRHS ATHLL G DLR +Q +LGH L+TTQIYT+V+ + + Sbjct: 262 VPDAPDLGPHGLRHSAATHLLEGGADLRMVQELLGHASLATTQIYTHVSIER----LAAS 317 Query: 314 YDQTHP 319 Y Q HP Sbjct: 318 YAQAHP 323 >gi|78222639|ref|YP_384386.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15] gi|78193894|gb|ABB31661.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15] Length = 295 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 93/300 (31%), Positives = 146/300 (48%), Gaps = 15/300 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L +E+GL+K +L SY D ++L FL EK + ++ F++ + Sbjct: 8 FLNYLLVEKGLAKNSLDSYGRDMIRYLDFL-----EKRNCGEPSAVRPVDVADFLAHLKD 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS R+LS ++ F ++L + + K LP+ L ++ Sbjct: 63 CGLAPRSRARALSAVRMFHRFLLVEGYAEANPTAIIEAPKTLAKLPQILAGREV-----E 117 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LL D R+ A+L LLY GLR+SE + L +++ L GKG K R+V Sbjct: 118 ALLAAPGSDSAQDMRDRAMLELLYATGLRVSELVGLGLRDVNVTAGYLMAFGKGGKERLV 177 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ S A+ Y +++ N LF G + F I++ G+ + Sbjct: 178 PMGESACAAVSRYLAEARPEMDRNGDNAYLFLTRLGDRMTRQAFWNIIKKRAIEAGIRKT 237 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRHSFATHLL NG DLRS+Q++LGH L+TTQIYT+V + + I+++ HP Sbjct: 238 ISPHTLRHSFATHLLENGADLRSVQAMLGHADLATTQIYTHVTRER----LKRIHEEYHP 293 >gi|28897283|ref|NP_796888.1| site-specific tyrosine recombinase XerD [Vibrio parahaemolyticus RIMD 2210633] gi|260363587|ref|ZP_05776407.1| tyrosine recombinase XerD [Vibrio parahaemolyticus K5030] gi|260876248|ref|ZP_05888603.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AN-5034] gi|260896426|ref|ZP_05904922.1| tyrosine recombinase XerD [Vibrio parahaemolyticus Peru-466] gi|260902723|ref|ZP_05911118.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ4037] gi|28805492|dbj|BAC58772.1| integrase/recombinase XerD [Vibrio parahaemolyticus RIMD 2210633] gi|308088405|gb|EFO38100.1| tyrosine recombinase XerD [Vibrio parahaemolyticus Peru-466] gi|308092863|gb|EFO42558.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AN-5034] gi|308107651|gb|EFO45191.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ4037] gi|308113317|gb|EFO50857.1| tyrosine recombinase XerD [Vibrio parahaemolyticus K5030] Length = 305 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 93/305 (30%), Positives = 153/305 (50%), Gaps = 21/305 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF--YTEEKITIQTIRQLSYTEIRAFIS 76 + +L + +ERGLS+ TL SY D + L ++ Y + I++ +++ Y + Sbjct: 16 EQFLDAMWMERGLSENTLASYRNDLMKLLTWMDHHRYRLDFISLSGLQE--YQTYLVDLD 73 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 ++T + R LS I+ +YL + K+ + + + K LP+ ++E+Q Sbjct: 74 YKQTSR------ARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQV-- 125 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 + LL ++ R+ A+L LLY GLR++E +SLT +NI Q +R+ GKG K Sbjct: 126 ---DALLDAPDPNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGK 182 Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 R+VP+ + I + P L +F R + + F I+ G Sbjct: 183 ERLVPMGENAVDWIETFIQQGRPALLGETSSDVVFPSKRARQMTRQTFWHRIKYYAVIAG 242 Query: 256 LPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 + + H LRH+FATHLL+ G DLR +Q +LGH LSTTQIYT+V ++ + +I+ Sbjct: 243 IDTDQLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIH 298 Query: 315 DQTHP 319 Q HP Sbjct: 299 SQHHP 303 >gi|307251104|ref|ZP_07533028.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306856934|gb|EFM89066.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 336 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 93/305 (30%), Positives = 159/305 (52%), Gaps = 19/305 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L IE+ S+ TL +Y+ RQ L ++ I+ T ++++ +R I++ Q +G Sbjct: 49 LRIEKQASQHTLSNYQ---RQLLAVSDMLSQAGIS--TWQEVNSATVRWIIAQSNKQGLG 103 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 +S+ L ++ + YL +++ + + + ++ K S LP+ ++ +QA L L Sbjct: 104 AKSIALRLVALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQAKQL----LTS 159 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 SHE D R+ A++ L+Y GLR+SE L ++ +R+ GKG+K RIVP+ Sbjct: 160 DSHEPS--DLRDLAMMELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGS 217 Query: 205 SVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 +A+ + + F N +F RG L+ Q +++ GL H Sbjct: 218 KALEALNRWLAVRNQFKPQDN---AVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPH 274 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323 LRHSFATH+L GDLR+IQ +LGH L+TTQIYT+++ ++ + +IYD HP + Sbjct: 275 KLRHSFATHMLEASGDLRAIQELLGHSNLATTQIYTHLDFQH----LAKIYDAAHPRAKR 330 Query: 324 KDKKN 328 K + + Sbjct: 331 KKQDD 335 >gi|242242770|ref|ZP_04797215.1| tyrosine recombinase XerD [Staphylococcus epidermidis W23144] gi|242233906|gb|EES36218.1| tyrosine recombinase XerD [Staphylococcus epidermidis W23144] Length = 295 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 97/302 (32%), Positives = 155/302 (51%), Gaps = 19/302 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTI-RQLSYTEIRAFISKR 78 +L ++IE+GLS T+ +Y D +++ +L + KI+ I I RQ+ + I Sbjct: 8 YLNFIQIEKGLSNNTIGAYRRDLKKYKDYLE---DNKISHIDFIDRQIIQECLGHLIDMG 64 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 ++ K SL R +S I+SF ++ + K + + + K LP L + + Sbjct: 65 QSSK----SLARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEIDEVI--- 117 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL T K R+ +L LLY G+R++E + L +++ +R+ GKG+K R Sbjct: 118 --ALLETPDLAKNNGYRDRTMLELLYATGMRVTEIIQLDVEDVNLMMGFVRVFGKGNKER 175 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 IVPL +V + + Y + P L LF + GK L+ + I+Q + Sbjct: 176 IVPLGDTVIEYLTTYIETVRPQLLKQTTTQALFLNMHGKSLSRQGIWKIIKQYGLKANIN 235 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + T HTLRHSFATHLL NG DLR++Q +LGH +STTQ+YT+V+ + ++Y Q Sbjct: 236 KTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYTQF 291 Query: 318 HP 319 HP Sbjct: 292 HP 293 >gi|229524404|ref|ZP_04413809.1| tyrosine recombinase XerD [Vibrio cholerae bv. albensis VL426] gi|229337985|gb|EEO03002.1| tyrosine recombinase XerD [Vibrio cholerae bv. albensis VL426] Length = 302 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 94/304 (30%), Positives = 156/304 (51%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + ERGL++ T+ SY D + L ++A + + + I E ++++S+ Sbjct: 13 EQFLDTMWFERGLAENTVTSYRNDLSKLLEWMA---QNQYRLDFISFAGLQEYQSWLSE- 68 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q S R LS I+ +YL + K+ + + + K LP+ L+E Q Sbjct: 69 --QNYKPTSKARMLSAIRRLFQYLYREKVRADDPSALLISPKLPTRLPKDLSEAQV---- 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL ++ R+ A+L LLY GLR++E +SLT +N+ Q +R+ GKG K R Sbjct: 123 -EALLSAPDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKER 181 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VP+ + + I E + L L Q +F RG+ + F I+ G+ Sbjct: 182 LVPMGENAIEWI-ETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGI 240 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + H LRH+FATHLL+ G DLR +Q +LGH LSTTQIYT+V ++ + ++++ Sbjct: 241 DVEKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHN 296 Query: 316 QTHP 319 + HP Sbjct: 297 EHHP 300 >gi|113461426|ref|YP_719495.1| site-specific tyrosine recombinase XerD [Haemophilus somnus 129PT] gi|170718469|ref|YP_001783684.1| site-specific tyrosine recombinase XerD [Haemophilus somnus 2336] gi|112823469|gb|ABI25558.1| tyrosine recombinase XerD subunit [Haemophilus somnus 129PT] gi|168826598|gb|ACA31969.1| tyrosine recombinase XerD [Haemophilus somnus 2336] Length = 297 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 95/290 (32%), Positives = 158/290 (54%), Gaps = 27/290 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-EKITIQTIRQLSYTEIRAFISKRR 79 +L L +E+GLS+ T+QSY D L L+ + E + ++++T L +++ F+ +R Sbjct: 10 FLNELWLEKGLSENTVQSYRLD----LTALSQWLEPQGLSLET---LDVVDLQTFLGERL 62 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 TQ S R LS ++ +YL + K ++ + + K + LP+ L E+Q L Sbjct: 63 TQGYKATSTARMLSALRKLFQYLYREKYRSDDPSAVLSSPKLPSRLPKYLTEQQVTDL-- 120 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 L+T + ++ R+ A+L +LY GLR++E +SL+ +I +Q +R+ GKG K RI Sbjct: 121 ---LNTPNTEIPLELRDKAMLEMLYATGLRVTELVSLSLDSININQGVVRVIGKGKKERI 177 Query: 200 VPLLPS----VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 VP+ +R+ IL + ++ P RG + Q + +++ Y Sbjct: 178 VPMGEEANYWLRQFILYGRSFLLAGQSSDVVFPSRRGTQM------TRQTFWHRVKYYAI 231 Query: 256 LP-LSTTA---HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 L + T+A H LRH+FATHL+++G DLR +Q +LGH LSTTQIYT+V Sbjct: 232 LAEIDTSALSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHV 281 >gi|319400839|gb|EFV89058.1| tyrosine recombinase XerD [Staphylococcus epidermidis FRI909] Length = 295 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 97/302 (32%), Positives = 155/302 (51%), Gaps = 19/302 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTI-RQLSYTEIRAFISKR 78 +L ++IE+GLS T+ +Y D +++ +L + KI+ I I RQ+ + I Sbjct: 8 YLNFIQIEKGLSNNTIGAYRRDLKKYKDYLE---DNKISHIDFIDRQIIQECLGHLIDMG 64 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 ++ K SL R +S I+SF ++ + K + + + K LP L + + Sbjct: 65 QSSK----SLARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEINEVI--- 117 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL T K R+ +L LLY G+R++E + L +++ +R+ GKG+K R Sbjct: 118 --ALLETPDLAKNNGYRDRTMLELLYATGMRVTEIIQLDVEDVNLMMGFVRVFGKGNKER 175 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 IVPL +V + + Y + P L LF + GK L+ + I+Q + Sbjct: 176 IVPLGDTVIEYLTTYIETVRPQLLKQTTTQALFLNMHGKSLSRQGIWKIIKQYGLKANIN 235 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + T HTLRHSFATHLL NG DLR++Q +LGH +STTQ+YT+V+ + ++Y Q Sbjct: 236 KTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQ----IRKMYTQF 291 Query: 318 HP 319 HP Sbjct: 292 HP 293 >gi|260885407|ref|ZP_05896922.1| integrase/recombinase XerC [Prevotella tannerae ATCC 51259] gi|260852293|gb|EEX72162.1| integrase/recombinase XerC [Prevotella tannerae ATCC 51259] Length = 299 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 93/305 (30%), Positives = 152/305 (49%), Gaps = 21/305 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLI-FLAFYTEEKITIQTIRQLSYTEIRAFISK 77 Q +L L ++G S LT+ Y R L F AFY ++ T+ T + + +R +I Sbjct: 10 QRFLSYLASDKGYSPLTIMKY----RDVLEGFEAFYISQEATL-TWQTIDADLVRRWIVW 64 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 R I R+++R LS ++SF +YL + + + ++N K + LP + + + L Sbjct: 65 RMDDGIVGRTVRRDLSALRSFYRYLLVLGLIEKDPMCFVKNPKSAQPLPAFVRQSEMDRL 124 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 D + E + R+ IL Y G+R +E L++ +I + +R+ GK +K Sbjct: 125 FDKTHFPETFEGQ----RDYLILLTFYSTGVRRAELLAMQWVDIDLSRCEVRVTGKRNKQ 180 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 RI+P + +A YY DL ++ PLF G+PL P R + YL L Sbjct: 181 RIIPFGAELAEAFQAYY-AARMDLVKHMSGPLFIQSNGRPLQPTQVGRIVHD---YLSLV 236 Query: 258 LST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 + + H LRHSFAT +L+NG DL +++ +LGH L+TT IYT+V + +++ Y Sbjct: 237 TNIKKRSPHVLRHSFATAMLNNGADLMAVKELLGHSNLNTTAIYTHVTPEE----LLKEY 292 Query: 315 DQTHP 319 HP Sbjct: 293 KHAHP 297 >gi|153839359|ref|ZP_01992026.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ3810] gi|149747107|gb|EDM58095.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ3810] gi|328472047|gb|EGF42924.1| site-specific tyrosine recombinase XerD [Vibrio parahaemolyticus 10329] Length = 305 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 93/305 (30%), Positives = 153/305 (50%), Gaps = 21/305 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF--YTEEKITIQTIRQLSYTEIRAFIS 76 + +L + +ERGLS+ TL SY D + L ++ Y + I++ +++ Y + Sbjct: 16 EQFLDAMWMERGLSENTLASYRNDLMKLLTWMEHHRYRLDFISLSGLQE--YQTYLVDLD 73 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 ++T + R LS I+ +YL + K+ + + + K LP+ ++E+Q Sbjct: 74 YKQTSR------ARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQV-- 125 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 + LL ++ R+ A+L LLY GLR++E +SLT +NI Q +R+ GKG K Sbjct: 126 ---DALLDAPDPNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGK 182 Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 R+VP+ + I + P L +F R + + F I+ G Sbjct: 183 ERLVPMGENAIDWIETFIQQGRPALLGETSSDVVFPSKRARQMTRQTFWHRIKYYAVIAG 242 Query: 256 LPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 + + H LRH+FATHLL+ G DLR +Q +LGH LSTTQIYT+V ++ + +I+ Sbjct: 243 IDTDQLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIH 298 Query: 315 DQTHP 319 Q HP Sbjct: 299 SQHHP 303 >gi|118594103|ref|ZP_01551450.1| Tyrosine recombinase XerC [Methylophilales bacterium HTCC2181] gi|118439881|gb|EAV46508.1| Tyrosine recombinase XerC [Methylophilales bacterium HTCC2181] Length = 300 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 89/296 (30%), Positives = 152/296 (51%), Gaps = 19/296 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 ++ E+ LS LT++SY D R + ++ + ++ +IR IS + I Sbjct: 14 IKFEKRLSALTIKSYLRDIRLL--------DSELQGKDLQSYQVDDIRRGISVFHAKGIN 65 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 +SL R LS + F +L R + + ++ ++ K LP+ L+ A+ LV Sbjct: 66 GKSLSRMLSSWRGFFDFLNHRYEFSLNPVMGIKAPKAKKLLPQTLSIDHAIKLV------ 119 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + + ++ R+ AI+ L Y GLR+SE ++ +I D+ T I GKG+K RIVP+ Sbjct: 120 SITDKSFLGLRDRAIMELFYSSGLRLSELAAMKLADINMDEQTASILGKGNKSRIVPIGS 179 Query: 205 SVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 +A+ ++ + + N + LF +G L Q ++ G+P + H Sbjct: 180 HALQALNDWIVMRKKISDFNPRTTHLFLSEKGNALGVRSIQYRLKFWAIKQGIPENIHPH 239 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LRHSFA+HLL + DLR++Q +LGH +STTQIYT+++ ++ + +IYD HP Sbjct: 240 LLRHSFASHLLQSSQDLRAVQELLGHANISTTQIYTHLDYQH----LSKIYDDAHP 291 >gi|145633727|ref|ZP_01789452.1| tyrosine recombinase [Haemophilus influenzae 3655] gi|144985386|gb|EDJ92213.1| tyrosine recombinase [Haemophilus influenzae 3655] Length = 295 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 96/304 (31%), Positives = 151/304 (49%), Gaps = 25/304 (8%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L IER +S TL +Y+ + LA + I Q++ + +R +++ + Q + Sbjct: 12 LRIERQMSPHTLTNYQHQLDATIKILA-----QQDIYAWAQVTPSVVRFILAESKKQGLK 66 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 ++SL LS ++ FL +L ++ + + K+ LP+ ++ +Q V +L + Sbjct: 67 EKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGKHLPKNMDGEQ----VQQLLAN 122 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 S E ID R+ AIL L+Y GLR+SE L +I +R+ GKG+K R+VP Sbjct: 123 DSKEP--IDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGR 180 Query: 205 SVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 AI E+ + P D LF G ++ Q+ + GL Sbjct: 181 YASHAIQEWLKVRALFNPKDE------ALFVSQLGNRISHRAIQKRLETWGIRQGLNSHL 234 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 H LRHSFATH+L DLR++Q +LGH LSTTQIYT++N ++ + E+YDQ HP Sbjct: 235 NPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEVYDQAHPR 290 Query: 321 ITQK 324 +K Sbjct: 291 AKRK 294 >gi|94309002|ref|YP_582212.1| site-specific tyrosine recombinase XerC [Cupriavidus metallidurans CH34] gi|93352854|gb|ABF06943.1| tyrosine-based site-specific tyrosine recombinase XerC [Cupriavidus metallidurans CH34] Length = 369 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 96/326 (29%), Positives = 156/326 (47%), Gaps = 37/326 (11%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ---TIRQLSYTEIRAFISK 77 +L L R L+ TL SY D L+ + I + + L IR+F ++ Sbjct: 34 YLDWLATSRKLAAHTLTSYGHD-------LSVLQSQAIRLAPGVALLALETRHIRSFAAR 86 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALT 136 + R++ R+LS + F + + +SN ++ +R K+ LP+AL+ + A+ Sbjct: 87 LHGNGLSARTIARTLSAWRGFYLWAARHGHGVQSNPVDGVRAPKRGRPLPKALSVEHAVA 146 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-----------DQ 185 LV H +T R+ A+ L Y GLR+SE + L + D D Sbjct: 147 LV----AHRQDDTN-ESLRDQAVFELFYSSGLRLSELIQLDVRYTEDGDYRSSGWLDLDG 201 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNP 240 + + + GKG + R VP+ +A+ + L P L + LF G RG+ L Sbjct: 202 AEVTVLGKGSRRRTVPVGSKAIQALKAWIHVREMMLRPGALPEDAHA-LFLGTRGRRLPI 260 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 Q+ I++ G+P H LRHSFATH+L + GDLR++Q +LGH +STTQIYT+ Sbjct: 261 STVQQRIKRQALAAGVPSDVHPHMLRHSFATHMLQSSGDLRAVQEMLGHASISTTQIYTS 320 Query: 301 VNSKNGGDWMMEIYDQTHPSITQKDK 326 ++ ++ + ++YDQ HP + K Sbjct: 321 LDFQH----LAKVYDQAHPRAGRASK 342 >gi|319896642|ref|YP_004134835.1| site-specific recombinase xerd [Haemophilus influenzae F3031] gi|317432144|emb|CBY80495.1| Site-specific recombinase XerD [Haemophilus influenzae F3031] Length = 297 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 89/295 (30%), Positives = 152/295 (51%), Gaps = 17/295 (5%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 IE+GLS+ T+QSY D +L + ++++T L +++ F+ +R + Sbjct: 16 IEKGLSENTVQSYRLDLTALCDWL---DKNGLSLET---LDAVDLQGFLGERLEKGYKAT 69 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R LS ++ +YL + K + + + K + LP+ L E+Q + LL+T Sbjct: 70 STARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQV-----SDLLNTP 124 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 ++ R+ A+L LLY GLR++E +SLT +N+ Q +R+ GKG+K RIVP+ Sbjct: 125 DVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEA 184 Query: 207 RKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHT 264 + ++ P LN +F R + + F ++ + + H Sbjct: 185 AYWVRQFMLYGRPVLLNGQSSDVVFPSQRTQQMTRQTFWHRVKHYAILADIDADALSPHV 244 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LRH+FATHL+++G DLR +Q +LGH LSTTQIYT+V + + ++++ HP Sbjct: 245 LRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER----LKRLHERFHP 295 >gi|225620975|ref|YP_002722233.1| site-specific recombinase XerD [Brachyspira hyodysenteriae WA1] gi|225215795|gb|ACN84529.1| site-specific recombinase XerD [Brachyspira hyodysenteriae WA1] Length = 297 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 88/285 (30%), Positives = 151/285 (52%), Gaps = 14/285 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +E+GLS TL+SY+ R +I+L F + K ++I + + +I F+S+R+ Sbjct: 2 YLNYEAVEKGLSSNTLESYK---RDIVIYLDFLSRNK---KSILKATRKDIEKFLSERKE 55 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q R++ R+ I + K+L +++ N+ ++ LP +L + T VD+ Sbjct: 56 QGSKSRTVARNKVSIVNLYKFLVMENYISKNPTDNLEVIRLKRVLPESLTD----TEVDD 111 Query: 141 VL-LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 +L +H K + R+ AI L+Y GLR+SE SL +I + L+I GKG + RI Sbjct: 112 LLAVHNEKTDKGL--RDKAIFELMYSSGLRVSEICSLKIDDIFFEGKYLKICGKGKRERI 169 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VP+ + Y + + LF RG ++ + +++ + + Sbjct: 170 VPINDRALDILQRYIQTSRVIMVKGKKTSELFLNFRGDKISRVGIWKIVKEAMKKSKIEK 229 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + HTLRHSFATHL+ +G DLR++Q +LGH ++TT+IYT+V+S Sbjct: 230 NIYPHTLRHSFATHLIQHGADLRAVQRMLGHSDITTTEIYTHVDS 274 >gi|254508834|ref|ZP_05120944.1| tyrosine recombinase XerD [Vibrio parahaemolyticus 16] gi|219548220|gb|EED25235.1| tyrosine recombinase XerD [Vibrio parahaemolyticus 16] Length = 298 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 92/303 (30%), Positives = 152/303 (50%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + +ERGLS+ TL SY D + L ++ ++ + I E + +++ Sbjct: 9 EQFLDAMWMERGLSENTLASYRNDLSKLLQWM---SKHNYRLDFISLSGLQEYQTWLADE 65 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 ++ S R LS I+ +YL + KI + + + K LP+ L+E Q Sbjct: 66 GYKQT---SRARMLSAIRRLFQYLHREKIRADDPSALLVSPKLPKRLPKDLSEAQV---- 118 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + LL ++ R+ A+L LLY GLR++E +SLT +NI Q +R+ GKG K R Sbjct: 119 -DALLDAPDPNDPMELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKER 177 Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ + I + + +L N +F R + + F I+ G+ Sbjct: 178 LVPMGENAVDWIETFLEQGRSELLGENTSDVVFPSKRARQMTRQTFWHRIKHYAVIAGID 237 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL+ G DLR +Q +LGH LSTTQIYT+V ++ + +++ + Sbjct: 238 SEKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHSE 293 Query: 317 THP 319 HP Sbjct: 294 HHP 296 >gi|163735189|ref|ZP_02142625.1| tyrosine recombinase XerD [Roseobacter litoralis Och 149] gi|161391647|gb|EDQ15980.1| tyrosine recombinase XerD [Roseobacter litoralis Och 149] Length = 323 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 95/316 (30%), Positives = 152/316 (48%), Gaps = 23/316 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ E G ++ TL +Y D + F FL T + Q ++ A++ Sbjct: 11 FLEAQAAELGAARNTLLAYGRDLKDFDSFL---THRNLDFHAAAQ---ADVEAYLIACDA 64 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + + R LS +K ++ + +++ L + + LP+ L+E + L++ Sbjct: 65 EGLSKATRARRLSAVKQLYRFAFEEGWRSDNPALQITGPGRDRKLPKTLSEAEVDRLLEA 124 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 +S ARN+ ++ LLY G+R++E +SL D L I+GKG K R+V Sbjct: 125 A--RSSGRNTADRARNTCLMELLYATGMRVTELVSLPVSAARGDPRMLLIRGKGGKERMV 182 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQ--------LPLFRGIRGKPLNPGVFQRYIRQLRR 252 PL P R A E+ L L L RG+ G L F I++L Sbjct: 183 PLSPPARDATSEWLRLRDEKEALKKADGHPPSRFLYASRGVSGH-LTRNRFYLLIKELAV 241 Query: 253 YLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 G+ P T HTLRH+FATHLL+NG DLRSIQ++LGH ++TT+IYT+V + ++ Sbjct: 242 DAGVSPSKVTPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHVLEARLSELVL 301 Query: 312 EIYDQTHPSITQKDKK 327 TH + Q+D + Sbjct: 302 -----THHPLAQEDPR 312 >gi|154498071|ref|ZP_02036449.1| hypothetical protein BACCAP_02052 [Bacteroides capillosus ATCC 29799] gi|150273061|gb|EDN00218.1| hypothetical protein BACCAP_02052 [Bacteroides capillosus ATCC 29799] Length = 298 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 92/311 (29%), Positives = 154/311 (49%), Gaps = 22/311 (7%) Query: 11 SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70 + LKE +++L+ E+ S TL SY D Q+ +L E +T + Q + Sbjct: 6 GMDYLKEYESYLKT---EKKASLNTLSSYLRDIHQYAGWL---EGESLTAEQANQ---AD 56 Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 + ++ + ++ RSL+ +KSF +L + T + + + K LP+ L Sbjct: 57 VERYVKHLSGKGKSVATVTRSLASMKSFYNFLIGAGVVTINPVRGITPAKVERKLPQILT 116 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 K+ ++ L + R+ A+L LLY G+R+SE + L +++ +R Sbjct: 117 SKEV-----DLFLEQPDPSDAKGCRDKAMLELLYATGIRVSELIGLNLEHVNLSAGFVRC 171 Query: 191 QGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 G+ K RI+PL P+ +A+ Y + P + + LF + G+ ++ F + I+ Sbjct: 172 VGR-SKERIIPLYPAAVRALTAYMTQVRPQMIEHPDEKALFVNMNGERMSRQGFWKIIKH 230 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN-VNSKNGGD 308 + G+ T HTLRHSFA HLL NG DLRSIQ +LGH +S+TQIY VN K Sbjct: 231 YQEKAGIRKDITPHTLRHSFAAHLLENGADLRSIQEMLGHADISSTQIYAQLVNQK---- 286 Query: 309 WMMEIYDQTHP 319 + ++Y++ HP Sbjct: 287 -LKDVYNKAHP 296 >gi|295675162|ref|YP_003603686.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1002] gi|295435005|gb|ADG14175.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1002] Length = 307 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 83/316 (26%), Positives = 154/316 (48%), Gaps = 29/316 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +LE ER LS+ TL+ Y + + + + + L+ +IR +++ Sbjct: 10 YLSHLEHERRLSEHTLRGYTHELAELKLL--------AKGRPLESLTAVDIRGAVARAHA 61 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS+ LS ++F ++L + + +R K++ +LP+AL+ L+D+ Sbjct: 62 GGLTARSIGHRLSAWRAFYRWLAGHVELPANPVAAVRAPKQAKTLPKALSVDDTARLMDS 121 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL-----------TPQNIMDDQSTLR 189 + R+ A+L L Y GLR++E + L + + D + Sbjct: 122 PPADSPEGL-----RDHAMLELFYSSGLRLAELVGLDVRFADVDGYRSAGWLKLDSGEVE 176 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 + GKG++ R+VP+ S A L + + + PLF RG L+P V + +++ Sbjct: 177 VLGKGNRRRVVPV-GSKAVAALNAWLAVRERMVRHDPHPLFLSARGNRLSPNVVRERVKR 235 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 G+P + H LRHSFATH+L + GDLR++Q +LGH ++ TQ+YT ++ ++ Sbjct: 236 AALAAGIPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTGLDFQH---- 291 Query: 310 MMEIYDQTHPSITQKD 325 + +YD HP +++ Sbjct: 292 LAHVYDSAHPRAKKRN 307 >gi|308455404|ref|XP_003090242.1| hypothetical protein CRE_23788 [Caenorhabditis remanei] gi|308265127|gb|EFP09080.1| hypothetical protein CRE_23788 [Caenorhabditis remanei] Length = 319 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 89/314 (28%), Positives = 150/314 (47%), Gaps = 19/314 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +L +E E G S T+++Y D +L + + +L +R ++ R+ Sbjct: 9 GFLSAVEFEYGYSPQTVRAYRRDLLSLSEYLEASAPDSGPESDVSELGLETLRDWLWSRQ 68 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q + +L R+++ +KSF K+L++ ++ + +R K ++LPR L++ Q ++D Sbjct: 69 EQGLAQSTLARNVATLKSFGKWLEQHRLVAGNPASRLRTPKAPSALPRVLSDDQISRILD 128 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + I R+ A+L LLY LR+SE L + Q T+R+ GKG K R+ Sbjct: 129 RAE-SLARGGDPIAVRDRALLELLYATALRVSEVCGLDLSGLDRIQRTVRVVGKGAKERV 187 Query: 200 VPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVF------QRYIRQLRR 252 VP A+ EY +L N+ G+ + VF + Q+ R Sbjct: 188 VPFGAPAALALEEYLSSARSELMNVATDAASSAGLVRESATTAVFLSASGSRIQAHQIYR 247 Query: 253 YLGLPLSTTA-------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + L HTLRH+ ATHLL+ G DLR +Q +LGH L++TQ+YT+V+++ Sbjct: 248 LVARSLEQEPGSGPRGPHTLRHTAATHLLNGGADLRVVQEMLGHSSLASTQVYTHVSTER 307 Query: 306 GGDWMMEIYDQTHP 319 + + Y Q HP Sbjct: 308 ----LAQSYRQAHP 317 >gi|16272618|ref|NP_438836.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae Rd KW20] gi|260581486|ref|ZP_05849296.1| tyrosine recombinase XerC [Haemophilus influenzae RdAW] gi|260582981|ref|ZP_05850764.1| tyrosine recombinase XerC [Haemophilus influenzae NT127] gi|1175024|sp|P44818|XERC_HAEIN RecName: Full=Tyrosine recombinase xerC gi|1573676|gb|AAC22336.1| integrase/recombinase (xerC) [Haemophilus influenzae Rd KW20] gi|260091846|gb|EEW75799.1| tyrosine recombinase XerC [Haemophilus influenzae RdAW] gi|260093965|gb|EEW77870.1| tyrosine recombinase XerC [Haemophilus influenzae NT127] Length = 295 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 95/304 (31%), Positives = 152/304 (50%), Gaps = 25/304 (8%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L IER +S T+ +Y+ + LA + I + Q++ + +R +++ + Q + Sbjct: 12 LRIERQMSPHTITNYQHQLDATIKILA-----QQDIHSWTQVTPSVVRFILAESKKQGLK 66 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 ++SL LS ++ FL +L ++ + + K+ LP+ ++ +Q V +L + Sbjct: 67 EKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQ----VQQLLAN 122 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 S E ID R+ AIL L+Y GLR+SE L +I +R+ GKG+K R+VP Sbjct: 123 DSKEP--IDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGR 180 Query: 205 SVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 AI E+ + P D LF G ++ Q+ + GL Sbjct: 181 YASHAIQEWLKVRALFNPKDE------ALFVSQLGNRISHRAIQKRLETWGIRQGLNSHL 234 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 H LRHSFATH+L DLR++Q +LGH LSTTQIYT++N ++ + E+YDQ HP Sbjct: 235 NPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEVYDQAHPR 290 Query: 321 ITQK 324 +K Sbjct: 291 AKRK 294 >gi|227503375|ref|ZP_03933424.1| site-specific tyrosine recombinase XerC [Corynebacterium accolens ATCC 49725] gi|227075878|gb|EEI13841.1| site-specific tyrosine recombinase XerC [Corynebacterium accolens ATCC 49725] Length = 305 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 84/297 (28%), Positives = 141/297 (47%), Gaps = 31/297 (10%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 +G ++ T++ Y D + I T + +R ++ + +L Sbjct: 32 KGRAEATVRGYRADLKNL----------AQDIDTFADFNLNNLRQWLGNAVAEGKARATL 81 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 R + +K+F + ++ T + K LP + +QA LV N + + E Sbjct: 82 ARRTASVKAFSTWAEREGYLTRDVAARLVTPKVGQHLPTVMAPQQAGELVGNAV--SVDE 139 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 + R+SAIL LLY G+R++E + L +++ +ST R+ GKG+K R+VP + Sbjct: 140 AHF--QRDSAILELLYASGMRVAELVRLDIEDVDFKRSTARVTGKGNKQRVVPFGAAATD 197 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA------ 262 A+ ++ D ++ +F G RG ++ RQ+RR + + T Sbjct: 198 ALQQWIDGGRKEMARGETQAIFVGSRGARIDQ-------RQVRRIVDKAATVTGTSGLTP 250 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H +RH ATHLL G DLR +Q +LGH LSTTQIYT+V++K + ++Y Q HP Sbjct: 251 HGVRHLAATHLLEGGADLRVVQELLGHSSLSTTQIYTHVSAKR----LKQVYSQAHP 303 >gi|258423907|ref|ZP_05686792.1| tyrosine recombinase XerC [Staphylococcus aureus A9635] gi|257845936|gb|EEV69965.1| tyrosine recombinase XerC [Staphylococcus aureus A9635] Length = 298 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 98/322 (30%), Positives = 165/322 (51%), Gaps = 42/322 (13%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 ++ +L L++ER S+ TL+SY+ D QF FL +E + + T Y + R ++S Sbjct: 5 QEAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLE---QEHLQLNT---FEYKDARNYLSY 58 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSLPRALNEKQ 133 + + S+ R +S +++F +Y +T + NI+N + + KK LP+ E++ Sbjct: 59 LYSNHLKRTSVSRKISTLRTFYEYW----MTLDENIINPFVQLVHPKKEKYLPQFFYEEE 114 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L V TS R+ IL LLY G+R+SE +++ Q+I + + + GK Sbjct: 115 MEALFKTVEEDTSK-----SLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGK 169 Query: 194 GDKIRIVPLLPSVRKAILEYYDL------CPFDLNLNIQLPLFRGIRGKPLNP-GVFQRY 246 G K R VP R++I Y + C D L ++G+ + GV RY Sbjct: 170 GSKERFVPFGAYCRQSIENYLEHFKPIQSCNHDF-------LIVNMKGEAITERGV--RY 220 Query: 247 IRQ--LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + ++R G+ H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++ Sbjct: 221 VLNDIVKRTAGVS-EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQ 279 Query: 305 NGGDWMMEIYDQTHPSITQKDK 326 + ++Y HP ++++ Sbjct: 280 Q----LRKVYLNAHPRAKKENE 297 >gi|145631901|ref|ZP_01787657.1| tyrosine recombinase [Haemophilus influenzae R3021] gi|148826672|ref|YP_001291425.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae PittEE] gi|229847208|ref|ZP_04467312.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae 7P49H1] gi|166918886|sp|A5UE41|XERC_HAEIE RecName: Full=Tyrosine recombinase xerC gi|144982462|gb|EDJ90028.1| tyrosine recombinase [Haemophilus influenzae R3021] gi|148716832|gb|ABQ99042.1| tyrosine recombinase [Haemophilus influenzae PittEE] gi|229809884|gb|EEP45606.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae 7P49H1] gi|309973815|gb|ADO97016.1| Site-specific tyrosine recombinase XerC [Haemophilus influenzae R2846] Length = 295 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 95/304 (31%), Positives = 151/304 (49%), Gaps = 25/304 (8%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L IER +S T+ +Y+ + LA + I Q++ + +R +++ + Q + Sbjct: 12 LRIERQMSPHTITNYQHQLDATIKILA-----QQDIHAWTQVTPSVVRFILAESKKQGLK 66 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 ++SL LS ++ FL +L ++ + + K+ LP+ ++ +Q V +L + Sbjct: 67 EKSLALRLSALRRFLSFLVQQGELKVNPTTGISAPKQGKHLPKNMDGEQ----VQQLLAN 122 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 S E ID R+ AIL L+Y GLR+SE L +I +R+ GKG+K R+VP Sbjct: 123 DSKEP--IDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGR 180 Query: 205 SVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 AI E+ + P D LF G ++ Q+ + GL Sbjct: 181 YASHAIQEWLKVRALFNPKDE------ALFVSQLGNRISHRAIQKRLETWGIRQGLNSHL 234 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 H LRHSFATH+L DLR++Q +LGH LSTTQIYT++N ++ + E+YDQ HP Sbjct: 235 NPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEVYDQAHPR 290 Query: 321 ITQK 324 +K Sbjct: 291 AKRK 294 >gi|326799953|ref|YP_004317772.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21] gi|326550717|gb|ADZ79102.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21] Length = 298 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 94/306 (30%), Positives = 155/306 (50%), Gaps = 22/306 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++ Q L +ER L+K ++++Y D + L A Y+ +K + Q +IR F+ Sbjct: 8 KDFKQYLRLERSLAKNSIEAYLHDVEK-LRQHALYSHKKDPNAILTQ----DIRDFLEWI 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + S R LSGIK+F YL + + + LP L+ + L+ Sbjct: 63 YSLGMSAHSQARVLSGIKTFYHYLTLEGAMEHNPAALIEAPRLGRKLPDTLSIVEIDALI 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + L T RN A+L +LY CGLR+SE ++L N+ + +R+ GKG+K R Sbjct: 123 GAIDLSTPE-----GLRNKAMLEVLYSCGLRVSELVNLKISNLFLEIEFIRVTGKGNKER 177 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRY 253 ++P+ S K + Y + Q P +F RG PL+ + I++L Sbjct: 178 LIPIGHSAIKHLQIYLQHTRKE---GPQKPGMEDYVFLNRRGSPLSRVMVFLIIKELAIK 234 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 +GL + + HT RHSFATHL+ G DLR++Q +LGH +STT+IYT+++ D++ + Sbjct: 235 VGLKKTISPHTFRHSFATHLIEGGADLRAVQDMLGHESISTTEIYTHLDR----DYLRSV 290 Query: 314 YDQTHP 319 + HP Sbjct: 291 MIEFHP 296 >gi|54307771|ref|YP_128791.1| site-specific tyrosine recombinase XerD [Photobacterium profundum SS9] gi|46912194|emb|CAG18989.1| putative integrase/recombinase XerD [Photobacterium profundum SS9] Length = 292 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 96/305 (31%), Positives = 152/305 (49%), Gaps = 17/305 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + +ERGLS+ TL SY D L L +++EK + LS +++ + Sbjct: 3 ERFLDAMWMERGLSENTLMSYRND----LTKLRRWSDEKS--YRLVTLSSDDLQRYQQWL 56 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R +S I+ +YL + K+ + M + + LP+ L E+Q L+ Sbjct: 57 FDADFKQTSRARMVSAIRRLYQYLYREKVRDDDPSSMMISPRLPKRLPKDLTEEQVGALL 116 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D I+ R+ A+L LLY GLR++E +SLT +N Q +R+ GKG K R Sbjct: 117 D-----APDTNNPIELRDKAMLELLYATGLRVTELVSLTMENTNLRQGVVRVLGKGGKER 171 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ + I E+ D P L LF R + + F I+ G+ Sbjct: 172 LVPMGENAIDWIEEFIDSGRPLLLGEKSSDVLFPSKRARQMTRQTFWHRIKYYAVIAGID 231 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 T + H +RH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Sbjct: 232 TDTLSPHVMRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHAT 287 Query: 317 THPSI 321 HP + Sbjct: 288 HHPRV 292 >gi|323493661|ref|ZP_08098782.1| site-specific tyrosine recombinase XerD [Vibrio brasiliensis LMG 20546] gi|323312184|gb|EGA65327.1| site-specific tyrosine recombinase XerD [Vibrio brasiliensis LMG 20546] Length = 302 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 93/303 (30%), Positives = 151/303 (49%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L ++ +ERGLS+ TL SY D + L + T + I E ++++S Sbjct: 13 EQFLDSMWMERGLSENTLASYRND---LVKLLQWMTANNYRLDFISLSGLQEYQSWLSDS 69 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 ++ S R LS I+ +YL + KI ++ + + K LP+ L E Q Sbjct: 70 GYKQT---SRARMLSAIRRLFQYLHREKIRSDDPSALLVSPKLPKRLPKDLTEDQV---- 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL+ ++ R+ A+L LLY GLR++E +SLT +NI Q +R+ GKG K R Sbjct: 123 -EALLNAPDPNDAMELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKER 181 Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ + + I + +L +F R + + F I+ G+ Sbjct: 182 LVPMGENAVEWIETFLQQGRSELLGETTSDVVFPSKRARQMTRQTFWHRIKHYAVLAGID 241 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL+ G DLR +Q +LGH LSTTQIYT+V ++ + +++ + Sbjct: 242 TELLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHSE 297 Query: 317 THP 319 HP Sbjct: 298 HHP 300 >gi|315445045|ref|YP_004077924.1| tyrosine recombinase XerC subunit [Mycobacterium sp. Spyr1] gi|315263348|gb|ADU00090.1| tyrosine recombinase XerC subunit [Mycobacterium sp. Spyr1] Length = 300 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 84/296 (28%), Positives = 141/296 (47%), Gaps = 10/296 (3%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 LE+ERG S+ T ++Y D R FL +E+ + L+ +R++++ Sbjct: 12 LELERGRSEHTRRAYLGDLRSLFAFL----DERSPGTGLGGLTLPMLRSWLAAHAAADTA 67 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 +L R S +K+F + +R + + ++ K +LP L + QA ++ Sbjct: 68 RSTLARRTSSVKTFTAWAVRRGLIGDDPASRLQVPKARRTLPSVLRQDQARDALEAAE-S 126 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + + + R+ ++ +LY G+R+SE L ++ + LR+ GKG+K R VP Sbjct: 127 GAQQGDPLAVRDRLVVEMLYATGIRVSELCGLDVDDVDTSRRLLRVLGKGNKQRTVPYGE 186 Query: 205 SVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 A+ + ++ P + L G RGK L+P + + Q +G H Sbjct: 187 PAHAALTAWLHEGRPALATADSGPALLLGARGKRLDPRQARTVVHQTVSAVGGAPDIGPH 246 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LRHS ATHLL G DLR +Q +LGH L+TTQ+YT+V + ++DQ HP Sbjct: 247 GLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVTVAR----LRAVHDQAHP 298 >gi|189459721|ref|ZP_03008506.1| hypothetical protein BACCOP_00349 [Bacteroides coprocola DSM 17136] gi|189433568|gb|EDV02553.1| hypothetical protein BACCOP_00349 [Bacteroides coprocola DSM 17136] Length = 312 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 89/287 (31%), Positives = 145/287 (50%), Gaps = 20/287 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 + Q L++E+ LS+ T+Q+Y D + A+ T E I Q++ ++ F + Sbjct: 14 YKQYLKLEKSLSENTVQAYLTDLDKLF---AYLTLENIDYT---QVTLQDLETFSAGLHD 67 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 I RS R LSGI+SF +L + + + + LP L+ ++ L+ + Sbjct: 68 IGIHPRSQARILSGIRSFYHFLVLDDYIQQDPTELLESPQIGKHLPDVLSVEEIDALIGS 127 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + T RN AIL LY CGLR+SE +L ++ D+ ++++GKG K R+V Sbjct: 128 IDRSTRE-----GQRNCAILETLYSCGLRVSELCNLKISDLYFDEGFIKVEGKGSKQRLV 182 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLG 255 P+ P I Y+ + N + P +F GK ++ + I++L +G Sbjct: 183 PISPRAINEIRNYF----IERNQGLIKPEYEDFVFISRFGKNISRIMVFHIIKELASLIG 238 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 L + HT RHSFATHLL G +LR+IQ +LGH + TT+IYT+++ Sbjct: 239 LKKKISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHID 285 >gi|165977242|ref|YP_001652835.1| site-specific tyrosine recombinase XerC [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|307257905|ref|ZP_07539660.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|165877343|gb|ABY70391.1| integrase/recombinase XerC [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|306863592|gb|EFM95520.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 336 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 92/305 (30%), Positives = 159/305 (52%), Gaps = 19/305 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L IE+ S+ TL +Y+ RQ L ++ I+ T ++++ +R I++ Q +G Sbjct: 49 LRIEKQASQHTLSNYQ---RQLLAVSDMLSQAGIS--TWQEVNSATVRWIIAQSNKQGLG 103 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 +S+ L ++ + YL +++ + + + ++ K S LP+ ++ +QA L L Sbjct: 104 AKSIALRLVALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQAKQL----LTS 159 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 SHE D R+ A++ L+Y GLR+SE L ++ +R+ GKG+K RIVP+ Sbjct: 160 DSHEPS--DLRDLAMMELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGS 217 Query: 205 SVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 +A+ + + F N +F RG L+ Q +++ GL H Sbjct: 218 KALEALNRWLAVRNQFKPQDN---AVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPH 274 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323 LRHSFATH+L GDLR++Q +LGH L+TTQIYT+++ ++ + +IYD HP + Sbjct: 275 KLRHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQH----LAKIYDAAHPRAKR 330 Query: 324 KDKKN 328 K + + Sbjct: 331 KKQDD 335 >gi|57651821|ref|YP_186127.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus COL] gi|87162376|ref|YP_493842.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194960|ref|YP_499760.1| site-specific recombinase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221374|ref|YP_001332196.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus str. Newman] gi|161509418|ref|YP_001575077.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142042|ref|ZP_03566535.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253731871|ref|ZP_04866036.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733510|ref|ZP_04867675.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus TCH130] gi|258452551|ref|ZP_05700557.1| tyrosine recombinase xerC [Staphylococcus aureus A5948] gi|262048146|ref|ZP_06021033.1| hypothetical protein SAD30_1922 [Staphylococcus aureus D30] gi|262051314|ref|ZP_06023537.1| hypothetical protein SA930_2036 [Staphylococcus aureus 930918-3] gi|282920496|ref|ZP_06328217.1| tyrosine recombinase XerC [Staphylococcus aureus A9765] gi|284024245|ref|ZP_06378643.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus 132] gi|294848247|ref|ZP_06788994.1| tyrosine recombinase XerC [Staphylococcus aureus A9754] gi|304381184|ref|ZP_07363837.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|81694641|sp|Q5HGI0|XERC_STAAC RecName: Full=Tyrosine recombinase xerC gi|123003475|sp|Q2FZ30|XERC_STAA8 RecName: Full=Tyrosine recombinase xerC gi|123486192|sp|Q2FHI6|XERC_STAA3 RecName: Full=Tyrosine recombinase xerC gi|172048862|sp|A6QGF2|XERC_STAAE RecName: Full=Tyrosine recombinase xerC gi|189030085|sp|A8Z3T2|XERC_STAAT RecName: Full=Tyrosine recombinase xerC gi|57286007|gb|AAW38101.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus COL] gi|87128350|gb|ABD22864.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202518|gb|ABD30328.1| site-specific recombinase, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374174|dbj|BAF67434.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus str. Newman] gi|160368227|gb|ABX29198.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724281|gb|EES93010.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728564|gb|EES97293.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus TCH130] gi|257859769|gb|EEV82611.1| tyrosine recombinase xerC [Staphylococcus aureus A5948] gi|259160689|gb|EEW45710.1| hypothetical protein SA930_2036 [Staphylococcus aureus 930918-3] gi|259163712|gb|EEW48267.1| hypothetical protein SAD30_1922 [Staphylococcus aureus D30] gi|269940743|emb|CBI49125.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus TW20] gi|282594158|gb|EFB99145.1| tyrosine recombinase XerC [Staphylococcus aureus A9765] gi|294825047|gb|EFG41469.1| tyrosine recombinase XerC [Staphylococcus aureus A9754] gi|302751075|gb|ADL65252.1| site-specific recombinase XerC [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340167|gb|EFM06108.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315198492|gb|EFU28821.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus CGS01] gi|320140931|gb|EFW32778.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus MRSA131] gi|320144353|gb|EFW36119.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus MRSA177] gi|329313922|gb|AEB88335.1| Tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus T0131] gi|329727838|gb|EGG64289.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus 21189] Length = 298 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 98/319 (30%), Positives = 164/319 (51%), Gaps = 42/319 (13%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L++ER S+ TL+SY+ D QF FL +E + + T Y + R ++S + Sbjct: 8 FLNTLKVERNFSEHTLKSYQDDLIQFNQFLE---QEHLELNT---FEYRDARNYLSYLYS 61 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSLPRALNEKQALT 136 + S+ R +S +++F +Y +T + NI+N + + KK LP+ E++ Sbjct: 62 NHLKRTSVSRKISTLRTFYEYW----MTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEA 117 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L V TS + R+ IL LLY G+R+SE +++ Q+I + + + GKG K Sbjct: 118 LFKTVEEDTSK-----NLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSK 172 Query: 197 IRIVPLLPSVRKAILEYYDL------CPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQ 249 R VP R++I Y + C D L ++G+ + GV RY+ Sbjct: 173 ERFVPFGAYCRQSIENYLEHFKPIQSCNHDF-------LIVNMKGEAITERGV--RYVLN 223 Query: 250 --LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 ++R G+ H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++ Sbjct: 224 DIVKRTAGVS-EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ-- 280 Query: 308 DWMMEIYDQTHPSITQKDK 326 + ++Y HP ++++ Sbjct: 281 --LRKVYLNAHPRAKKENE 297 >gi|145224715|ref|YP_001135393.1| site-specific tyrosine recombinase XerC [Mycobacterium gilvum PYR-GCK] gi|189030078|sp|A4TEB1|XERC_MYCGI RecName: Full=Tyrosine recombinase xerC gi|145217201|gb|ABP46605.1| tyrosine recombinase XerC subunit [Mycobacterium gilvum PYR-GCK] Length = 300 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 84/296 (28%), Positives = 141/296 (47%), Gaps = 10/296 (3%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 LE+ERG S+ T ++Y D R FL +E+ + L+ +R++++ Sbjct: 12 LELERGRSEHTRRAYLGDLRSLFAFL----DERSPGTGLGGLTLPMLRSWLAAHAAAGTA 67 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 +L R S +K+F + +R + + ++ K +LP L + QA ++ Sbjct: 68 RSTLARRTSSVKTFTAWAVRRGLIGDDPASRLQVPKARRTLPSVLRQDQARDALEAAE-S 126 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + + + R+ ++ +LY G+R+SE L ++ + LR+ GKG+K R VP Sbjct: 127 GAQQGDPLAVRDRLVVEMLYATGIRVSELCGLDVDDVDTSRRLLRVLGKGNKQRTVPYGE 186 Query: 205 SVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 A+ + ++ P + L G RGK L+P + + Q +G H Sbjct: 187 PAHAALTAWLHEGRPALATADSGPALLLGARGKRLDPRQARTVVHQTVSAVGGAPDIGPH 246 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LRHS ATHLL G DLR +Q +LGH L+TTQ+YT+V + ++DQ HP Sbjct: 247 GLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVTVAR----LRAVHDQAHP 298 >gi|319900751|ref|YP_004160479.1| tyrosine recombinase XerD subunit [Bacteroides helcogenes P 36-108] gi|319415782|gb|ADV42893.1| tyrosine recombinase XerD subunit [Bacteroides helcogenes P 36-108] Length = 317 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 87/282 (30%), Positives = 144/282 (51%), Gaps = 13/282 (4%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 Q L +E+ LS TL +Y+ D + L FL +EKI I + + +++ F + Sbjct: 22 QYLRLEKSLSPNTLDAYQTDLEKLLRFLE---DEKIDILAV---TLDDLQRFTAGLHDIG 75 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 I RS R LSGIKSF +L + K LP L ++ ++ + Sbjct: 76 IHPRSQARILSGIKSFFHFLVLAGYLENDPSELLEGPKIGFKLPEVLTVEEIDRIIAAID 135 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202 ++T+ RN AIL LY CGLR+SE +L ++ ++ ++++GKG K R+VP+ Sbjct: 136 MNTNE-----GQRNRAILETLYSCGLRVSELCNLKISDLYFNEGFIKVEGKGSKQRLVPI 190 Query: 203 LPSVRKAILEYYDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 I + D + + + + +F G ++ + +I++L G+ S Sbjct: 191 SHRAITEITNWLDDRKERWKIKKDFEDYVFLARWGNGISRIMIFHFIKELAEKAGITKSI 250 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ Sbjct: 251 SPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHID 292 >gi|291615720|ref|YP_003518462.1| XerC [Pantoea ananatis LMG 20103] gi|291150750|gb|ADD75334.1| XerC [Pantoea ananatis LMG 20103] Length = 301 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 91/301 (30%), Positives = 148/301 (49%), Gaps = 19/301 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +L++L++ER LS LTL SY RQ + E KI+ + QL +R+ ++ R Sbjct: 11 GFLRHLKVERQLSPLTLSSY---ARQLAALVTIADEMKISAWS--QLDPAMVRSMAARSR 65 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + SL LS ++SFL + R + + + + LP+ ++ L++ Sbjct: 66 RAGLAASSLALRLSALRSFLDWQVSRDMLAANPAKGIATPRNGRHLPKNIDVDDVNQLLE 125 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 L T + R+ +L ++YG GLR+SE +++ +++ + + + GKG K R Sbjct: 126 IDL------TDPLAIRDRTMLEVMYGGGLRLSELVNMDCRHVDLEAGEVWVLGKGSKERR 179 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VP+ R A+ P N LF RG ++ Q+ + GL Sbjct: 180 VPI---GRTAVSWIQQWLPLRTAFNPGDDALFLSSRGSRISARNVQKRFAEWGIKQGLSS 236 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 H LRHSFATHLL + GDLR++Q +LGH LSTTQIYT+++ ++ + +YD H Sbjct: 237 HIHPHKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LASVYDAAH 292 Query: 319 P 319 P Sbjct: 293 P 293 >gi|313884218|ref|ZP_07817984.1| tyrosine recombinase XerD [Eremococcus coleocola ACS-139-V-Col8] gi|312620665|gb|EFR32088.1| tyrosine recombinase XerD [Eremococcus coleocola ACS-139-V-Col8] Length = 301 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 89/307 (28%), Positives = 155/307 (50%), Gaps = 25/307 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L+ L I++GLS+ T+ +YE D ++F F + + Q+ +R FI+ Sbjct: 13 DFLRFLAIDKGLSQNTIANYELDLKKFFRFCQIQN-----MDLLSQIDTDLVRLFIASLN 67 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + R LS +++F +L + +++ + + + KK+ +LP +L+ + V+ Sbjct: 68 KAGYAASTAARILSSLRAFFHFLMVEGVVSKNPMALIESPKKARTLPHSLSMAE----VE 123 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 +L + +TK+ R+ A+ LY GLR+SE +L+ ++ D ++ GKG+K R+ Sbjct: 124 AILAAPNTDTKF-GIRDRAMFETLYATGLRVSELANLSLGDLHLDLRFIQTLGKGNKERM 182 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP------LFRGIRGKPLNPGVFQRYIRQLRRY 253 VPL I +Y D + LP LF RGK + + + Sbjct: 183 VPLGEEAVFWIEKYLDQVR-----DGWLPKAGSDYLFLTQRGKAFTRQGIWKTLNKYVSL 237 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ + H LRHSFATH+L NG DLR +Q +LGH +STTQIYT+++ + E+ Sbjct: 238 AGIQKKVSPHVLRHSFATHILENGADLRLVQELLGHENISTTQIYTHISHYR----LQEV 293 Query: 314 YDQTHPS 320 Y ++ P Sbjct: 294 YRKSFPG 300 >gi|302879928|ref|YP_003848492.1| tyrosine recombinase XerD [Gallionella capsiferriformans ES-2] gi|302582717|gb|ADL56728.1| tyrosine recombinase XerD [Gallionella capsiferriformans ES-2] Length = 305 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 99/309 (32%), Positives = 156/309 (50%), Gaps = 19/309 (6%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 ELL E + +L +E GLS+ TL SY D +F +L Q + Q ++ +++ Sbjct: 5 ELLDE---FADSLWLEDGLSRNTLDSYRRDLNKFSDWL-----RNQRGQDLLQTTHADLQ 56 Query: 73 AFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131 +I+ QK S R+LS +K +YL ++ L + K +LP++L E Sbjct: 57 GYIADLFIVQKAKPSSAGRNLSSLKRLFRYLLRQGKIAIDPTLKIDTPKLPRNLPQSLTE 116 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 + V+ +L ET + R+ + +LY GLR+SE +SL + D +R+ Sbjct: 117 QD----VEQLLAAPDIETS-LGLRDRTMFEVLYATGLRVSELVSLGIGQLDMDMGVVRVA 171 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 GKG+K R+VPL + Y D L I LF RG + +F I++ Sbjct: 172 GKGNKERLVPLGEVALDWLQSYLDDSRGVLLAGRISDDLFVTARGSGMTRQMFWYLIKKH 231 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 + GL + HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V + + Sbjct: 232 AKQGGLDKPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARER----L 287 Query: 311 MEIYDQTHP 319 +++ + HP Sbjct: 288 KQLHAKHHP 296 >gi|218961859|ref|YP_001741634.1| Tyrosine recombinase xerD [Candidatus Cloacamonas acidaminovorans] gi|167730516|emb|CAO81428.1| Tyrosine recombinase xerD [Candidatus Cloacamonas acidaminovorans] Length = 313 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 85/301 (28%), Positives = 154/301 (51%), Gaps = 19/301 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +++ +L++ERG++K +++SY D FL+F + I +I ++ + Sbjct: 29 SFVYHLKVERGMAKNSIESYRRDIGDFLLFCP---------KEIGNYETDDITKYLLSLQ 79 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + + S+ R + F +LK I T+ ++ + +K LP L ++ L++ Sbjct: 80 EIGLLNTSVARKRVALGQFFGFLKDNDIETKVDMDLVPRIKLGVQLPDVLTVEEMFQLLN 139 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 ++ + T ++ RN ++ LLY G+RISE LS++ ++ + + + GKG K R Sbjct: 140 SLPVKTP-----LEIRNKLMMELLYATGMRISELLSISLHDLNLTERVILVHGKGSKQRY 194 Query: 200 VPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VP + ++ + +Y P L L LF RG+ ++ F + +R+ + Sbjct: 195 VPYVDTLDELFAKYLKQSRPILLKLKQSELLFLNNRGERMSRMGFWKILRKAVLEANIKK 254 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 T HT RHSFATHLL G +LR +Q++LGH + TTQIYT+++ K ++E Y + H Sbjct: 255 EVTPHTFRHSFATHLLEGGVNLRIVQALLGHSSIDTTQIYTHIDMKR----LVETYKEYH 310 Query: 319 P 319 P Sbjct: 311 P 311 >gi|121533770|ref|ZP_01665597.1| tyrosine recombinase XerC [Thermosinus carboxydivorans Nor1] gi|121307761|gb|EAX48676.1| tyrosine recombinase XerC [Thermosinus carboxydivorans Nor1] Length = 302 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 89/312 (28%), Positives = 152/312 (48%), Gaps = 25/312 (8%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 +E + + + L +E+ S T++SY D F F + ++ I + IRA++ Sbjct: 6 QEIEQFFRYLRLEKNASPHTVKSYREDIEHFWEFALQHNGSEVLFAAITPML---IRAYL 62 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 ++ + ++ R ++ ++SF ++L + + + + K LP L+E++ Sbjct: 63 ARLKADDYARTTIARRIAALRSFYRFLCREGLVDTNPFKLVHTPKIEKKLPVFLDEREVA 122 Query: 136 TLV----DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 L+ D+VL R++AIL LLY G+R++E L ++ + + Sbjct: 123 ELLELPADDVL----------GRRDAAILELLYATGIRVAELTGLKTSDVDLVSRFVIVC 172 Query: 192 GKGDKIRIVPLLPSVRKAILEY-YDLCP---FDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 GKG K RIVP+ + A+ Y D P LF +G PL +R I Sbjct: 173 GKGAKERIVPIGRTAAAALERYLADARPRLYSKWRKEQHQFLFINSKGGPLTDRSVRRII 232 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 + L + + HT+RH+FATH+L+NG DLRS+Q +LGH LSTTQ+YT+V + Sbjct: 233 DKYIANLAVAKKVSPHTIRHTFATHMLNNGADLRSVQEMLGHVNLSTTQLYTHVTKER-- 290 Query: 308 DWMMEIYDQTHP 319 + +Y +THP Sbjct: 291 --LKAVYRETHP 300 >gi|191174259|ref|ZP_03035768.1| tyrosine recombinase XerC [Escherichia coli F11] gi|300979372|ref|ZP_07174530.1| tyrosine recombinase XerC [Escherichia coli MS 200-1] gi|190905442|gb|EDV65072.1| tyrosine recombinase XerC [Escherichia coli F11] gi|300308044|gb|EFJ62564.1| tyrosine recombinase XerC [Escherichia coli MS 200-1] gi|324014716|gb|EGB83935.1| tyrosine recombinase XerC [Escherichia coli MS 60-1] Length = 298 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 92/307 (29%), Positives = 154/307 (50%), Gaps = 17/307 (5%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L + + +L+ L +ER LS +TL +Y+ RQ + F +E +Q+ +Q T +R Sbjct: 3 DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIIHFASEN--GLQSWQQCDVTMVR 57 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F + R + +G SL LS ++SF +L + + + K LP+ ++ Sbjct: 58 NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 L+D + + R+ A+L ++YG GLR+SE + L +++ + + + G Sbjct: 118 DMSRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 KG K R +P+ + I + DL DL + LF GK ++ Q+ + Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 GL H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ + Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285 Query: 313 IYDQTHP 319 +YD HP Sbjct: 286 VYDAAHP 292 >gi|21282864|ref|NP_645952.1| hypothetical protein MW1135 [Staphylococcus aureus subsp. aureus MW2] gi|49486091|ref|YP_043312.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus MSSA476] gi|297208102|ref|ZP_06924533.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912183|ref|ZP_07129626.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus TCH70] gi|34222912|sp|Q8NWZ8|XERC_STAAW RecName: Full=Tyrosine recombinase xerC gi|81649416|sp|Q6G9W1|XERC_STAAS RecName: Full=Tyrosine recombinase xerC gi|21204303|dbj|BAB95000.1| xerC [Staphylococcus aureus subsp. aureus MW2] gi|49244534|emb|CAG42963.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus MSSA476] gi|296887345|gb|EFH26247.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886429|gb|EFK81631.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus TCH70] Length = 298 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 98/322 (30%), Positives = 166/322 (51%), Gaps = 42/322 (13%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 ++ +L L++ER S+ TL+SY+ D QF FL +E + ++T Y + R ++S Sbjct: 5 QEAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLE---QEHLQLKT---FEYRDARNYLSY 58 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSLPRALNEKQ 133 + + S+ R +S +++F +Y +T + NI+N + + KK LP+ E++ Sbjct: 59 LYSNHLKRTSVSRKISTLRTFYEYW----MTLDENIINPFVQLVHPKKEKYLPQFFYEEE 114 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L V TS R+ IL LLY G+R+SE +++ Q+I + + + GK Sbjct: 115 MEALFKTVEEDTSK-----SLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGK 169 Query: 194 GDKIRIVPLLPSVRKAILEYYDL------CPFDLNLNIQLPLFRGIRGKPLNP-GVFQRY 246 G K R VP R++I Y + C D L ++G+ + GV RY Sbjct: 170 GSKERFVPFGAYCRQSIENYLEHFKPIQSCNHDF-------LIVNMKGEAITERGV--RY 220 Query: 247 IRQ--LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + ++R G+ H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++ Sbjct: 221 VLNDIVKRTAGVS-EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQ 279 Query: 305 NGGDWMMEIYDQTHPSITQKDK 326 + ++Y HP ++++ Sbjct: 280 Q----LRKVYLNAHPRAKKENE 297 >gi|293391879|ref|ZP_06636213.1| tyrosine recombinase XerD [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952413|gb|EFE02532.1| tyrosine recombinase XerD [Aggregatibacter actinomycetemcomitans D7S-1] Length = 297 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 95/301 (31%), Positives = 148/301 (49%), Gaps = 17/301 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L I +GLS T+ SY D L L + E + ++ L +++ F+ +R Sbjct: 10 FLNELWIGKGLSPNTVASYRLD----LTALCDWLEARHL--SLLSLDAVDLQTFLGERVE 63 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q S R LS I+ +YL + K T+ + + K N LP+ L E+Q L++ Sbjct: 64 QDYKATSTARLLSAIRKLFQYLYQEKYRTDDPSAVLSSPKLPNRLPKYLTEQQVTDLLNV 123 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 L I+ R+ A+L LLY GLR++E +SL +I +Q +R+ GKG K RIV Sbjct: 124 QSLEQP-----IELRDKAMLELLYATGLRVTELVSLNTNSINLNQGVVRVIGKGKKERIV 178 Query: 201 PLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ + ++ P L LF RG + F I+ + Sbjct: 179 PMGEEATHWVKQFMLFARPMLLGGQSSDVLFPSRRGTQMTRQTFWHRIKHYAVLAEIDSE 238 Query: 260 T-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + H LRH+FATHL+++G DLR +Q +LGH LSTTQIYT+V + + ++++ H Sbjct: 239 MLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER----LKRLHERYH 294 Query: 319 P 319 P Sbjct: 295 P 295 >gi|309751724|gb|ADO81708.1| Site-specific tyrosine recombinase XerC [Haemophilus influenzae R2866] Length = 295 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 94/300 (31%), Positives = 152/300 (50%), Gaps = 17/300 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L IER +S T+ +Y+ + LA + I + Q++ + +R +++ + Q + Sbjct: 12 LRIERQMSPHTITNYQHQLDATIKILA-----QQDIHSWTQVTPSVVRFILAESKKQGLK 66 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 ++SL LS ++ FL +L ++ + + K+ LP+ ++ +Q V +L + Sbjct: 67 EKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQ----VQQLLAN 122 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 S E ID R+ AIL L+Y GLR+SE L +I +R+ GKG+K R+VP Sbjct: 123 DSKEP--IDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGR 180 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 AI E+ + N + LF G ++ Q+ + GL H Sbjct: 181 YASHAIQEWLKVRAL-FNPKGE-ALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHK 238 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 LRHSFATH+L DLR++Q +LGH LSTTQIYT++N ++ + E+YDQ HP +K Sbjct: 239 LRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEVYDQAHPRAKRK 294 >gi|306815150|ref|ZP_07449303.1| site-specific tyrosine recombinase XerC [Escherichia coli NC101] gi|305851519|gb|EFM51973.1| site-specific tyrosine recombinase XerC [Escherichia coli NC101] Length = 298 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 92/307 (29%), Positives = 154/307 (50%), Gaps = 17/307 (5%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L + + +L+ L +ER LS +TL +Y+ RQ + F +E +Q+ +Q T +R Sbjct: 3 DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIINFASEN--GLQSWQQCDVTMVR 57 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F + R + +G SL LS ++SF +L + + + K LP+ ++ Sbjct: 58 NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 L+D + + R+ A+L ++YG GLR+SE + L +++ + + + G Sbjct: 118 DMSRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 KG K R +P+ + I + DL DL + LF GK ++ Q+ + Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 GL H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ + Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285 Query: 313 IYDQTHP 319 +YD HP Sbjct: 286 VYDAAHP 292 >gi|212638838|ref|YP_002315358.1| site-specific tyrosine recombinase XerD [Anoxybacillus flavithermus WK1] gi|212560318|gb|ACJ33373.1| Site-specific recombinase XerD [Anoxybacillus flavithermus WK1] Length = 300 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 91/310 (29%), Positives = 153/310 (49%), Gaps = 28/310 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY------TEIR 72 ++++ L +ER L+ T+ SYE D ++++ +L Q + QL + I Sbjct: 8 KDFIHYLIVERNLAHNTIVSYERDLKKYVQYL----------QKVEQLCHWNDVTRFHIM 57 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F+ + + +++ R L+ ++SF ++L + K + +++ ++ LPR L Sbjct: 58 QFLKFLKEKGSSPKTIARHLASVRSFHQFLLREKAVDQDPTVHI----ETPQLPRKLPNV 113 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 ++ V+ LL + R+ A+L LLY G+R+SE + L ++ +R G Sbjct: 114 LSMAEVE-ALLEAPKQNTPFSIRDKAMLELLYATGIRVSELIQLNISDVHLTMGFIRCYG 172 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 KG K RIVP+ +A+ Y + +L LF G+ L + +++ Sbjct: 173 KGRKERIVPIGKMATEALKRYIEQGRPELLQRKKGTTDALFLNHHGERLTRQGCWKILKR 232 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 L + + T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V D Sbjct: 233 LAQEANIQKQLTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKD- 291 Query: 310 MMEIYDQTHP 319 +Y Q HP Sbjct: 292 ---VYKQFHP 298 >gi|134093692|ref|YP_001098767.1| site-specific tyrosine recombinase [Herminiimonas arsenicoxydans] gi|133737595|emb|CAL60638.1| tyrosine recombinase XerD [Herminiimonas arsenicoxydans] Length = 309 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 88/279 (31%), Positives = 140/279 (50%), Gaps = 12/279 (4%) Query: 24 NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83 L +E GL+K +L++Y D R F ++L + +T+ ++ A+ R + Sbjct: 26 TLWLEDGLAKNSLEAYRRDLRLFAVWL-----QAERGKTLLAAHADDVNAYFFARH-EVT 79 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 S R L+ +K F + ++ ++ L MR+ K+ +P+ L+E Q LL Sbjct: 80 KATSSNRRLAVLKRFYQLALRQNRISDDPCLKMRSAKQPLRIPKTLSEAQV-----EALL 134 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 T + R+ +L L+Y GLR++E + L + ++ LRI GKG K R+VP Sbjct: 135 AAPDVTTPLGLRDRTMLELMYASGLRVTELVLLKSIEVGMNEGVLRITGKGGKTRLVPFG 194 Query: 204 PSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 R I Y + P L+ I LF RG + +F I++ + + Sbjct: 195 EEARVWIERYLKEARPLILDGQIDDALFVTARGAAMTRQMFWTLIKKHAAAAEINAPLSP 254 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V Sbjct: 255 HTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHV 293 >gi|90420213|ref|ZP_01228121.1| tyrosine recombinase XerD [Aurantimonas manganoxydans SI85-9A1] gi|90335547|gb|EAS49297.1| tyrosine recombinase XerD [Aurantimonas manganoxydans SI85-9A1] Length = 328 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 81/290 (27%), Positives = 140/290 (48%), Gaps = 13/290 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ + +ERG + T+ +Y D F+A +T T +IRA++ + Sbjct: 24 ETFLEMMAVERGAADNTVAAYRRDLEDAAGFMAGQGGSLMTATT------EDIRAYVGRL 77 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + S R LS ++ + ++L + + ++ LP+ ++E + L+ Sbjct: 78 AARGFAETSRSRRLSALRQYYRFLYVEGRRGDDPTGPIEGARRKRPLPKVMSEDEVDRLL 137 Query: 139 DNVLLHTSHETKWID-----ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 D + AR A++ LLY G+R+SE +SL + Q + ++GK Sbjct: 138 DRAAAEAVDPERSPAGLVRAARMHALVELLYATGMRVSELVSLPRAVLRGRQRMIVVRGK 197 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRR 252 GDK R+VP+ + R A++ + + LF + L F R ++ L Sbjct: 198 GDKERMVPIGEAARDALIRFAEAMKLAGVSEEGRWLFPAVSETGHLTRQAFARDLKALAA 257 Query: 253 YLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G+P + H LRH+FA+HLL NG DLR++Q +LGH +STTQIYT+V Sbjct: 258 REGIPAERISPHVLRHAFASHLLQNGADLRAVQELLGHADISTTQIYTHV 307 >gi|145629633|ref|ZP_01785430.1| tyrosine recombinase [Haemophilus influenzae 22.1-21] gi|144978144|gb|EDJ87917.1| tyrosine recombinase [Haemophilus influenzae 22.1-21] Length = 295 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 95/304 (31%), Positives = 152/304 (50%), Gaps = 25/304 (8%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L IER +S T+ +Y+ + LA + I + Q++ + +R +++ + Q + Sbjct: 12 LRIERQMSPHTITNYQHQLDATIKILA-----QQDIHSWTQVTPSVVRFILAESKKQGLK 66 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 ++SL LS ++ FL +L ++ + + K+ LP+ ++ +Q V +L + Sbjct: 67 EKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGKHLPKNMDGEQ----VQRLLAN 122 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 S E ID R+ AIL L+Y GLR+SE L +I +R+ GKG+K R+VP Sbjct: 123 DSKEP--IDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGR 180 Query: 205 SVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 AI E+ + P D LF G ++ Q+ + GL Sbjct: 181 YASHAIQEWLKVRALFNPKDE------ALFVSQLGNRISHRAIQKRLETWGIRQGLNNHL 234 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 H LRHSFATH+L DLR++Q +LGH LSTTQIYT++N ++ + E+YDQ HP Sbjct: 235 NPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEVYDQAHPR 290 Query: 321 ITQK 324 +K Sbjct: 291 AKRK 294 >gi|270295321|ref|ZP_06201522.1| tyrosine recombinase XerD [Bacteroides sp. D20] gi|270274568|gb|EFA20429.1| tyrosine recombinase XerD [Bacteroides sp. D20] Length = 317 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 92/294 (31%), Positives = 149/294 (50%), Gaps = 18/294 (6%) Query: 16 KERQN-----WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70 KE+Q + Q L++E+ LS T+ +Y+ D ++ L FL E I I + + Sbjct: 10 KEKQTLIIRKYHQYLKLEKALSPNTVDAYQTDLQKLLHFLE---GEGIAIL---DTTLDD 63 Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 ++ F S I RS R LSGIKSF +L + K LP L Sbjct: 64 LQHFASGLHDIGIHPRSQARILSGIKSFFHFLVIADYLEGDPSELLEGPKIGFKLPEVLT 123 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 ++ ++ + L T+ RN AIL LY CGLR+SE +L ++ D+ +++ Sbjct: 124 VEEIDRIISAIDLGTNE-----GQRNRAILETLYSCGLRVSELCNLKISDLYFDEGFIKV 178 Query: 191 QGKGDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 +GKG K R+VP+ K I ++ + + + + +F GK ++ + I+ Sbjct: 179 EGKGSKQRLVPISSRAIKEIRNWFVDRNGGWKIKKDFEDYVFLARWGKNISRIMVFHLIK 238 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 +L G+ + + HT RHSFATHLL G +LR+IQS+LGH ++TT+IYT+++ Sbjct: 239 ELAEKAGITKNISPHTFRHSFATHLLEGGANLRAIQSMLGHESIATTEIYTHID 292 >gi|323167559|gb|EFZ53265.1| tyrosine recombinase XerC [Shigella sonnei 53G] Length = 298 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 92/307 (29%), Positives = 154/307 (50%), Gaps = 17/307 (5%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L + + +L+ L +ER LS +TL +Y+ RQ + F +E +Q+ +Q T +R Sbjct: 3 DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIINFASEN--VLQSWQQCDVTMVR 57 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F + R + +G SL LS ++SF +L + + + K LP+ ++ Sbjct: 58 NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 L+D + + R+ A+L ++YG GLR+SE + L +++ + + + G Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 KG K R +P+ + I + DL DL + LF GK ++ Q+ + Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 GL H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ + Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285 Query: 313 IYDQTHP 319 +YD HP Sbjct: 286 VYDAAHP 292 >gi|261342297|ref|ZP_05970155.1| tyrosine recombinase XerD [Enterobacter cancerogenus ATCC 35316] gi|288315638|gb|EFC54576.1| tyrosine recombinase XerD [Enterobacter cancerogenus ATCC 35316] Length = 298 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 91/304 (29%), Positives = 161/304 (52%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +E+ L++ TL +Y R + + + + K++++T++ + +++A + +R Sbjct: 9 EQFLDALWLEKNLAENTLSAYR---RDLTMLVEWLSRRKLSLETVQ---HDDLQALLGER 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ ++L + KI + + + K LP+ L+E Q L+ Sbjct: 63 VDGGYKATSSARLLSAMRRLFQHLFREKIRADDPSALLASPKLPQRLPKDLSEAQVERLL 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + + ++ R+ A+L LLY GLR+SE + LT +I Q +R+ GKG+K R Sbjct: 123 QSPAVDLP-----LELRDKAMLELLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VPL + Y + P+ LN ++I + LF R + + F I+ G+ Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYATLAGI 236 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292 Query: 316 QTHP 319 Q HP Sbjct: 293 QHHP 296 >gi|283470467|emb|CAQ49678.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ST398] Length = 298 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 97/322 (30%), Positives = 164/322 (50%), Gaps = 42/322 (13%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 ++ +L L++ER S+ TL+SY+ D QF FL +E + + T Y + R ++S Sbjct: 5 QEAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLE---QEHLQLNT---FEYRDARNYLSY 58 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSLPRALNEKQ 133 + + S+ R +S +++F +Y +T + NI+N + + KK LP+ E++ Sbjct: 59 LYSNHLKRTSVSRKISTLRTFYEYW----MTLDENIINPFVQLVHPKKEKYLPQFFYEEE 114 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L T E R+ IL LLY G+R+SE +++ Q+I + + + GK Sbjct: 115 M-----EALFKTVEEDASKSLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGK 169 Query: 194 GDKIRIVPLLPSVRKAILEYYDL------CPFDLNLNIQLPLFRGIRGKPLNP-GVFQRY 246 G K R VP R++I Y + C D L ++G+ + GV RY Sbjct: 170 GSKERFVPFGAYCRQSIENYLEHFKPIQSCNHDF-------LIVNMKGEAITERGV--RY 220 Query: 247 IRQ--LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + ++R G+ H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++ Sbjct: 221 VLNNIVKRTAGVS-EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQ 279 Query: 305 NGGDWMMEIYDQTHPSITQKDK 326 + ++Y HP ++++ Sbjct: 280 Q----LRKVYLNAHPRAKKENE 297 >gi|260775484|ref|ZP_05884381.1| site-specific recombinase XerD [Vibrio coralliilyticus ATCC BAA-450] gi|260608665|gb|EEX34830.1| site-specific recombinase XerD [Vibrio coralliilyticus ATCC BAA-450] Length = 302 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 93/303 (30%), Positives = 151/303 (49%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + +ERGLS+ TL SY D + L ++ TE + I S + ++ + S Sbjct: 13 EQFLDAMWLERGLSENTLASYRNDLSKLLQWM---TENNYRLDFI---SLSGLQDYQSWL 66 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q S R LS I+ +YL + K+ + + + K LP+ L+E+Q Sbjct: 67 MDQGYKQTSRARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPKRLPKDLSEEQV---- 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL+ ++ R+ A+L LLY GLR++E +SLT +N+ Q +R+ GKG K R Sbjct: 123 -EALLNAPDPNDAMELRDKAMLELLYATGLRVTELVSLTMENVSLRQGVVRVTGKGGKER 181 Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ + I + +L +F R + + F I+ G+ Sbjct: 182 LVPMGENAVDWIETFIQQGRSELLGETTSDVVFPSKRARQMTRQTFWYRIKHYAVLAGID 241 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL+ G DLR +Q +LGH LSTTQIYT+V ++ + +++ + Sbjct: 242 TEMLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHSE 297 Query: 317 THP 319 HP Sbjct: 298 HHP 300 >gi|302332858|gb|ADL23051.1| site-specific recombinase XerC [Staphylococcus aureus subsp. aureus JKD6159] Length = 298 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 98/322 (30%), Positives = 165/322 (51%), Gaps = 42/322 (13%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 ++ +L L++ER S+ TL+SY+ D QF FL +E + + T Y + R ++S Sbjct: 5 QEAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLE---QEHLQLNT---FEYRDARNYLSY 58 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSLPRALNEKQ 133 + + S+ R +S +++F +Y +T + NI+N + + KK LP+ E++ Sbjct: 59 LYSNHLKRTSVSRKISTLRTFYEYW----MTLDENIINPFVQLVHPKKEKYLPQFFYEEE 114 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L V TS R+ IL LLY G+R+SE +++ Q+I + + + GK Sbjct: 115 MEALFKTVEEDTSK-----SLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGK 169 Query: 194 GDKIRIVPLLPSVRKAILEYYDL------CPFDLNLNIQLPLFRGIRGKPLNP-GVFQRY 246 G K R VP R++I Y + C D L ++G+ + GV RY Sbjct: 170 GSKERFVPFGAYCRQSIENYLEHFKPIQSCKHDF-------LIVNMKGEAITERGV--RY 220 Query: 247 IRQ--LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + ++R G+ H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++ Sbjct: 221 VLNDIVKRTAGVS-EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQ 279 Query: 305 NGGDWMMEIYDQTHPSITQKDK 326 + ++Y HP ++++ Sbjct: 280 Q----LRKVYLNAHPRAKKENE 297 >gi|197118261|ref|YP_002138688.1| integrase/recombinase XerD [Geobacter bemidjiensis Bem] gi|197087621|gb|ACH38892.1| integrase/recombinase XerD [Geobacter bemidjiensis Bem] Length = 292 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 92/300 (30%), Positives = 147/300 (49%), Gaps = 18/300 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L +E+G + T+ +Y D ++L+FL + I +++ F++K + Sbjct: 8 FLNYLLVEKGAAANTVSAYSRDLNRYLLFLGEREPDGIRP--------SDVTGFLAKLKG 59 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + I RS R+LS ++ ++L + + + + K LP L+ ++ L+ + Sbjct: 60 EGIAPRSRARALSALRMLHRFLLREGYSELNPTAIIEAPKGVRKLPAVLSGREVEALLSS 119 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 L +T + R+ A+L LLY GLR+SE + L + L GKGDK R+V Sbjct: 120 PL-----DTGAQELRDKAMLELLYATGLRVSELVGLKLSEVNLSAGYLMTIGKGDKERLV 174 Query: 201 PLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ S A Y +L LF G ++ F I++ G+ S Sbjct: 175 PMGESACHATGVYLQQARGELLKEKASTLLFLSRLGGGMSRQAFWNIIKKRALQAGVRTS 234 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRHSFATHLL NG DLRS+Q +LGH LS+TQIYT+V + M +++ HP Sbjct: 235 ISPHTLRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVTRER----MKKLHADFHP 290 >gi|188026224|ref|ZP_02961334.2| hypothetical protein PROSTU_03358 [Providencia stuartii ATCC 25827] gi|188022113|gb|EDU60153.1| hypothetical protein PROSTU_03358 [Providencia stuartii ATCC 25827] Length = 307 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 92/303 (30%), Positives = 157/303 (51%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + +E+ L++ TL SY D + +L + ++Q+I ++++F+++R Sbjct: 18 EQFLDTIWLEQDLAENTLASYRLDLQLLDKWLEANQLDLESVQSI------DLQSFLAER 71 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +Y + KI + + K LP+ L+E+Q V Sbjct: 72 IEGGYKAASSARLLSAMRRLFQYFYREKIRLDDPSAVIAAPKIPQRLPKDLSEQQ----V 127 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 +++L + E ++ R+ A+L +LY CGLR+SE + LT +I Q +R+ GKG+K R Sbjct: 128 EDLLNAPATEDP-LELRDKAMLEVLYACGLRVSELVGLTFSDISLRQGVIRVVGKGNKER 186 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 ++PL + +Y + P LN LF RG + F I+ + Sbjct: 187 LIPLGEEAIYWVEKYLEEGRPDLLNGKASDVLFPSKRGTKMTRQTFWHRIKHYAVIANID 246 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++Q Sbjct: 247 SEALSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRMLHEQ 302 Query: 317 THP 319 HP Sbjct: 303 HHP 305 >gi|262195487|ref|YP_003266696.1| integrase family protein [Haliangium ochraceum DSM 14365] gi|262078834|gb|ACY14803.1| integrase family protein [Haliangium ochraceum DSM 14365] Length = 395 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 109/359 (30%), Positives = 155/359 (43%), Gaps = 73/359 (20%) Query: 19 QNWLQN----LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 Q WL L ERG S T +Y R F Y E Q++ +IRA Sbjct: 14 QRWLARFDDYLRTERGGSAHTRAAY---GRDLAEFGRVYEERSGAPPVPAQVAVLDIRAH 70 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 ++ ++ ++ R LS ++SF +L +R + +R+ K+ +LPRAL+ A Sbjct: 71 LAGL-YERNDAATMARKLSALRSFFAFLVQRGALDNNPARGVRSPKRRKALPRALDVDDA 129 Query: 135 LTLVD------------------------------------------NVLLHTSHETKWI 152 L++ N TS E + Sbjct: 130 FRLIEAPTRAPASGADAAAASPARNVGRSGGRSANRAGATGTASAGKNKRAKTSREP--L 187 Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI--------QGKGDKIRIVPLLP 204 R+ AI +LYG GLR+ E +L +DD R+ +GKG K RIVPL Sbjct: 188 KLRDRAIAEVLYGSGLRVGECCALD----LDDIDRARLSSALVRVRRGKGGKERIVPLGR 243 Query: 205 SVRKAILEYYDLCPF--DLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 A+ Y ++ P D + P LF RG L QR I + + +G Sbjct: 244 QAVAALDAYLNVRPLLRDPKTGARDPAALFLSYRGTRLTTRSVQRMIGRNAQEVGA-YEA 302 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T H LRHSFATHLL +G DLR+IQ +LGH L++TQIYT V+ D +M +YD +HP Sbjct: 303 TPHALRHSFATHLLDSGVDLRAIQELLGHASLASTQIYTKVSL----DHLMNVYDASHP 357 >gi|260173069|ref|ZP_05759481.1| integrase [Bacteroides sp. D2] gi|315921346|ref|ZP_07917586.1| integrase [Bacteroides sp. D2] gi|313695221|gb|EFS32056.1| integrase [Bacteroides sp. D2] Length = 319 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 90/286 (31%), Positives = 149/286 (52%), Gaps = 13/286 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + Q L++E+ LS TL +Y D + + FL T E I + + ++++ F + Sbjct: 18 RKYQQYLKLEKSLSLNTLDAYLTDLDKLMSFL---TLEGINVLDV---CLSDLQRFAAGL 71 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 I RS R LSGIKSF ++L + K LP L ++ ++ Sbjct: 72 HDIGIHPRSQARILSGIKSFFRFLILENYLEADPSELLEGPKIGFKLPEVLTVEEIDRII 131 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 V +K RN AIL LY CGLR+SE ++L ++ D+ ++++GKG K R Sbjct: 132 SAV-----DRSKAEGQRNRAILETLYSCGLRVSELITLKLSDLYFDEGFIKVEGKGSKQR 186 Query: 199 IVPLLP-SVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGL 256 +VP+ P ++ + L D ++ + +F R GK L+ + I++L + G+ Sbjct: 187 LVPISPRAINEIKLYITDRNQIEVKKGHEDFVFVSQRRGKGLSRIMIFHMIKELAQKAGI 246 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ Sbjct: 247 TKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHID 292 >gi|225013068|ref|ZP_03703483.1| integrase family protein [Flavobacteria bacterium MS024-2A] gi|225002796|gb|EEG40777.1| integrase family protein [Flavobacteria bacterium MS024-2A] Length = 289 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 98/300 (32%), Positives = 155/300 (51%), Gaps = 22/300 (7%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI- 83 L IERGLS+ ++Q+Y D FL EKI ++ S ++ FI + T KI Sbjct: 3 LTIERGLSENSIQNYILDVHALQYFL---INEKIE-ESPTDCSLDSVQKFIYE--TAKIL 56 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 + R LSG++SF YL T + + K LP L+ ++ +++ + L Sbjct: 57 SPHTQARRLSGLRSFFDYLIFESYRTSNPTDLIEAPKLGRKLPDVLSTEEIELMINQINL 116 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 SH RN AIL +LYG G+R+SE +L+ N+ ++ +R+ GKG+K R+VP+ Sbjct: 117 --SHPQGQ---RNRAILEILYGSGIRVSELTNLSLSNLFFEEDMIRVHGKGNKQRLVPM- 170 Query: 204 PSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 + K LE Y + N I + +F RG L + I+ L + Sbjct: 171 GGISKEFLEEY-ITETRKNQKISVKDKDIVFLNRRGNGLTRQMIFTLIKDLAIKANVKKQ 229 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HT RHSFATHLL NG DLR+IQ ++GH ++TT+IYT++++++ + + ++ HP Sbjct: 230 VGPHTFRHSFATHLLENGADLRTIQILMGHESITTTEIYTHLDTQH----LRSVIERFHP 285 >gi|157372126|ref|YP_001480115.1| site-specific tyrosine recombinase XerD [Serratia proteamaculans 568] gi|157323890|gb|ABV42987.1| tyrosine recombinase XerD [Serratia proteamaculans 568] Length = 299 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 93/303 (30%), Positives = 154/303 (50%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ER L++ TL SY D L L + ++ T ++ Q +++AF++ R Sbjct: 10 EQFLDALWLERNLAENTLASYRLD----LQALGAWLNQQNT--SLLQAQALDLQAFLADR 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + + ++ + + K LP+ L+E Q Sbjct: 64 VEGGYKATSSARLLSAMRRLFQYLYRENMRSDDPTALLASPKLPQRLPKDLSEAQV---- 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + LL + ++ R+ A+L +LY GLR+SE + LT ++ Q +R+ GKG+K R Sbjct: 120 -DALLKAPCVDQPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKER 178 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL I Y + P+ +N LF R + + F I+ G+ Sbjct: 179 LVPLGEEAVYWIENYLEHGRPWMVNGQALDVLFPSNRSQQMTRQTFWHRIKHYAILAGID 238 Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Q Sbjct: 239 SERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQQ 294 Query: 317 THP 319 HP Sbjct: 295 HHP 297 >gi|254229667|ref|ZP_04923077.1| tyrosine recombinase XerD [Vibrio sp. Ex25] gi|262395210|ref|YP_003287064.1| site-specific recombinase XerD [Vibrio sp. Ex25] gi|151937788|gb|EDN56636.1| tyrosine recombinase XerD [Vibrio sp. Ex25] gi|262338804|gb|ACY52599.1| site-specific recombinase XerD [Vibrio sp. Ex25] Length = 305 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 93/305 (30%), Positives = 153/305 (50%), Gaps = 21/305 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA--FYTEEKITIQTIRQLSYTEIRAFIS 76 + +L + +ERGLS+ TL SY D + L ++ Y + I++ +++ Y + Sbjct: 16 EQFLDAMWMERGLSENTLASYRNDLMKLLTWMEKHRYRLDFISLSGLQE--YQSYLVDLD 73 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 ++T + R LS I+ +YL + K+ + + + K LP+ ++E+Q Sbjct: 74 YKQTSR------ARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQV-- 125 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 + LL ++ R+ A+L LLY GLR++E +SLT +NI Q +R+ GKG K Sbjct: 126 ---DALLEAPDPNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGK 182 Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 R+VP+ + I + P L +F R + + F I+ G Sbjct: 183 ERLVPMGENAVDWIETFIQQGRPALLGDTSSDIVFPSKRARQMTRQTFWHRIKYYALIAG 242 Query: 256 LPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 + + H LRH+FATHLL+ G DLR +Q +LGH LSTTQIYT+V ++ + +I+ Sbjct: 243 IDTEQLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIH 298 Query: 315 DQTHP 319 Q HP Sbjct: 299 SQHHP 303 >gi|82750853|ref|YP_416594.1| integrase/recombinase [Staphylococcus aureus RF122] gi|123754641|sp|Q2YXL6|XERC_STAAB RecName: Full=Tyrosine recombinase xerC gi|82656384|emb|CAI80803.1| integrase/recombinase [Staphylococcus aureus RF122] Length = 298 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 98/322 (30%), Positives = 165/322 (51%), Gaps = 42/322 (13%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 ++ +L L++ER S+ TL+SY+ D QF FL +E + + T Y + R ++S Sbjct: 5 QEAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLE---QEHLQLNT---FEYRDARNYLSY 58 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSLPRALNEKQ 133 + + S+ R +S +++F +Y +T + NI+N + + KK LP+ E++ Sbjct: 59 LYSNHLKRTSVSRKISTLRTFYEYW----MTLDENIINPFVQLVHPKKEKYLPQFFYEEE 114 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L V TS R+ IL LLY G+R+SE +++ Q+I + + + GK Sbjct: 115 MEALFKTVEEDTSK-----SLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVFGK 169 Query: 194 GDKIRIVPLLPSVRKAILEYYDL------CPFDLNLNIQLPLFRGIRGKPLNP-GVFQRY 246 G K R VP R++I Y + C D L ++G+ + GV RY Sbjct: 170 GSKERFVPFGAYCRQSIENYLEHFKPIQSCNHDF-------LIVNMKGEAITERGV--RY 220 Query: 247 IRQ--LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + ++R G+ H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++ Sbjct: 221 VLNDIVKRTAGVS-EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQ 279 Query: 305 NGGDWMMEIYDQTHPSITQKDK 326 + ++Y HP ++++ Sbjct: 280 Q----LRKVYLNAHPRAKKENE 297 >gi|148379825|ref|YP_001254366.1| tyrosine recombinase XerD [Clostridium botulinum A str. ATCC 3502] gi|153931147|ref|YP_001384123.1| tyrosine recombinase XerD [Clostridium botulinum A str. ATCC 19397] gi|153934877|ref|YP_001387663.1| tyrosine recombinase XerD [Clostridium botulinum A str. Hall] gi|148289309|emb|CAL83405.1| tyrosine recombinase [Clostridium botulinum A str. ATCC 3502] gi|152927191|gb|ABS32691.1| tyrosine recombinase XerD [Clostridium botulinum A str. ATCC 19397] gi|152930791|gb|ABS36290.1| tyrosine recombinase XerD [Clostridium botulinum A str. Hall] Length = 291 Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 84/301 (27%), Positives = 161/301 (53%), Gaps = 17/301 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +N++++L+ ++ LSK TL++Y D +F F+ E +++ T+ I AF+ Sbjct: 6 ENYIKDLQ-KKNLSKNTLEAYRRDVEKFSEFVRNREERILSVDTV------TIMAFVQYL 58 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + S+ R++ +++F KYL K+ + +E L K ++P+ L+ ++ V Sbjct: 59 QREGRATSSIVRNIVSVRNFYKYLIKKNMVSEDPTLGYEIPKIERTIPKILSVEE----V 114 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D +L + K + R+ A+L L+Y G++I+E L+L +I + ++ +G + R Sbjct: 115 DKLLNSPNSSKKGL--RDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRER 172 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 I+P+ K + Y ++ P N+ LF ++G + F + I+ + + Sbjct: 173 IIPIGSYAIKCLKNYLEVRPAINVYNLDY-LFLNLKGTQMTRQGFWKIIKFYAKEASIDK 231 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 ++TLRHSFA HLL NG D++S+Q +LGH L+ TQIY++++ K+ + E+Y H Sbjct: 232 EIDSYTLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSK---IAEVYKNAH 288 Query: 319 P 319 P Sbjct: 289 P 289 >gi|50083543|ref|YP_045053.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1] gi|49529519|emb|CAG67231.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1] Length = 305 Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 83/234 (35%), Positives = 127/234 (54%), Gaps = 9/234 (3%) Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 RS+ RSLS ++ F K+L+++KI ++ + ++ K +LP+ L+E+ L+H Sbjct: 79 RSIARSLSALRQFFKFLREQKIRDDNPVALHKSPKLGRTLPKDLSEQDV-----EALIHA 133 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 + R+ A+L +LY CGLR+SE L+L + I Q LRI GKG+K R+VPL Sbjct: 134 PDTNTALGLRDRAMLEVLYACGLRVSELLNLRLELINLKQGYLRITGKGNKERLVPLGQM 193 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 I Y L + LF G ++ F I++ + + HTL Sbjct: 194 ATDWIERYLVESRPQLYKSHTDYLFLTQHGGIMSRQNFWYAIKRYALQANILPEMSPHTL 253 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 RH+FATHLL++G DLR +Q +LGH LSTTQIYT+V M +++++ HP Sbjct: 254 RHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQIR----MQQLHEKYHP 303 >gi|261868581|ref|YP_003256503.1| site-specific tyrosine recombinase XerD [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413913|gb|ACX83284.1| tyrosine recombinase XerD [Aggregatibacter actinomycetemcomitans D11S-1] Length = 297 Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 94/301 (31%), Positives = 151/301 (50%), Gaps = 17/301 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L I +GLS T++SY D L L + E + ++ L +++AF+ +R Sbjct: 10 FLNELWIGKGLSPNTVESYRLD----LTALCDWLEARHL--SLLGLDAVDLQAFLGERVE 63 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q S R LS ++ +YL + K T+ + + K + LP+ L E+Q L++ Sbjct: 64 QGYKATSTARLLSAMRKLFQYLYQEKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTDLLNV 123 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 L I+ R+ A+L LLY GLR++E +SL +I +Q +R+ GKG K RIV Sbjct: 124 QSLEQP-----IELRDKAMLELLYATGLRVTELVSLNTDSINLNQGVVRVIGKGKKERIV 178 Query: 201 PLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ + ++ P L+ LF RG + F I+ + Sbjct: 179 PMGEEATHWVKQFMLFARPMLLDGQSSDVLFPSRRGTQMTRQTFWHRIKHYAVLAEIDSE 238 Query: 260 T-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + H LRH+FATHL+++G DLR +Q +LGH LSTTQIYT+V + + ++++ H Sbjct: 239 MLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER----LKRLHERYH 294 Query: 319 P 319 P Sbjct: 295 P 295 >gi|284037325|ref|YP_003387255.1| tyrosine recombinase XerD [Spirosoma linguale DSM 74] gi|283816618|gb|ADB38456.1| tyrosine recombinase XerD [Spirosoma linguale DSM 74] Length = 305 Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 88/303 (29%), Positives = 151/303 (49%), Gaps = 16/303 (5%) Query: 20 NWLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 N +N L++ER L++ ++++Y D + ++ + +Q + E+ F+ Sbjct: 7 NAFKNYLKLERSLAENSVEAYLHDAEKLYEYILLTDPARTPMQVTEK----ELMNFLKYL 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S R LSGIKSF KYL + + + K LP L+ + ++ Sbjct: 63 GELGLSAHSQARMLSGIKSFFKYLLLEGLIERDPTQLLESPKLGRKLPDTLSFPEIEDML 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + L T T R+ A+L +LY GLR+SE L+L N + +R+ GKGDK+R Sbjct: 123 AAIDLSTPGGT-----RDRAMLEVLYSSGLRVSELLNLRLTNCFFTEGFVRVLGKGDKVR 177 Query: 199 IVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VP+ Y + D+ + +F +RGK L+ I++L +G+ Sbjct: 178 LVPIGEDAMHYTRIYVEHVRQKLDVQKGDEDTIFLNLRGKQLSRISVFTTIKKLASEVGI 237 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + + HT RHSFATHL+ G DLR++Q +LGH ++TT+IYT+++ D++ + + Sbjct: 238 KKTISPHTFRHSFATHLIEGGADLRAVQQMLGHESITTTEIYTHLDR----DYLQQTLKE 293 Query: 317 THP 319 HP Sbjct: 294 YHP 296 >gi|294674930|ref|YP_003575546.1| tyrosine recombinase XerD [Prevotella ruminicola 23] gi|294472077|gb|ADE81466.1| tyrosine recombinase XerD [Prevotella ruminicola 23] Length = 303 Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 86/288 (29%), Positives = 153/288 (53%), Gaps = 20/288 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +++ L+++R +S TL +Y+ D R+ L +L E++ I + + ++ F + Sbjct: 11 YVRYLKLQRNMSGNTLDAYQRDLRKLLDYLE---HEQLAISDV---TLADLEHFSASLHD 64 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 I RS R LSGI+SF K+++ + + + + + LP L ++ L ++ Sbjct: 65 IGIHPRSQCRILSGIRSFFKFVQLDGYRDDDPTELLESPQIGDHLPEVLTTQEVDRLEES 124 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + L +KW RN AI+ +L+ CGLR+SE ++L ++ D+ +R+ GKG K R+V Sbjct: 125 IDL-----SKWEGHRNRAIIEVLFSCGLRVSELVNLKLSDLYLDEEYVRVLGKGSKERLV 179 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLG 255 P+ P + + ++++ NL P +F RG L + I+ + Sbjct: 180 PISPKAIQELRFWFNV----RNLMKIKPGEEDYVFLNRRGAHLTRTMILIMIKAQAKEAR 235 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + + + HTLRHSFAT LL G DLR IQ++LGH + TT+IYT++++ Sbjct: 236 IQKTISPHTLRHSFATALLEGGADLRFIQALLGHEDIGTTEIYTHIDT 283 >gi|168180442|ref|ZP_02615106.1| tyrosine recombinase XerD [Clostridium botulinum NCTC 2916] gi|168184537|ref|ZP_02619201.1| tyrosine recombinase XerD [Clostridium botulinum Bf] gi|237795269|ref|YP_002862821.1| tyrosine recombinase XerD [Clostridium botulinum Ba4 str. 657] gi|182668654|gb|EDT80632.1| tyrosine recombinase XerD [Clostridium botulinum NCTC 2916] gi|182672365|gb|EDT84326.1| tyrosine recombinase XerD [Clostridium botulinum Bf] gi|229260695|gb|ACQ51728.1| tyrosine recombinase XerD [Clostridium botulinum Ba4 str. 657] Length = 291 Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 85/301 (28%), Positives = 161/301 (53%), Gaps = 17/301 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +N++++L+ ++ LSK TL++Y D +F F+ E+ +++ T+ I AF+ Sbjct: 6 ENYIKDLQ-KKNLSKNTLEAYRRDVEKFSEFVRNREEKILSVDTV------TIMAFVQYL 58 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + S+ R++ I++F KYL K+ + +E L K ++P+ L+ ++ V Sbjct: 59 QREGRATSSIVRNIVSIRNFYKYLIKKNMVSEDPTLGYEIPKIERTIPKILSVEE----V 114 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D +L K + R+ A+L L+Y G++I+E L+L +I + ++ +G + R Sbjct: 115 DKLLNSPDSSKKGL--RDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRER 172 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 I+P+ K + Y ++ P N+ LF ++G + F + I+ + + Sbjct: 173 IIPIGSYAIKCLKNYLEVRPAINVYNLDY-LFLNLKGTQMTRQGFWKIIKFYAKEAFIDK 231 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 ++TLRHSFA HLL NG D++S+Q +LGH L+ TQIY++++ K+ + E+Y H Sbjct: 232 EIDSYTLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSK---IAEVYKNAH 288 Query: 319 P 319 P Sbjct: 289 P 289 >gi|70726663|ref|YP_253577.1| hypothetical protein SH1662 [Staphylococcus haemolyticus JCSC1435] gi|82582336|sp|Q4L5V4|XERC_STAHJ RecName: Full=Tyrosine recombinase xerC gi|68447387|dbj|BAE04971.1| xerC [Staphylococcus haemolyticus JCSC1435] Length = 297 Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 96/310 (30%), Positives = 164/310 (52%), Gaps = 24/310 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L++ER S TL+SY D QF FL +E I ++T Y + R ++S + Sbjct: 8 FLNMLKVERNFSAHTLKSYHDDLVQFNHFLE---QELINLRT---FEYKDARNYLSYLYS 61 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q + ++ R +S +++F ++ + T + + + + KK N LP+ E++ L + Sbjct: 62 QNLKRTTVSRKISTLRTFYEFWMTQDETIINPFVQLVHPKKENYLPQFFYEEEMEALFET 121 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 V + +TK R+ IL LLY G+R+SE +++ ++I +++ GKG+K R V Sbjct: 122 V----AKDTKK-GLRDRVILELLYATGIRVSELVNIQLKDIDMSLPGVKVLGKGNKERFV 176 Query: 201 PLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQ--LRRYLGL 256 P R++I +Y + P + L + G P+ GV RY+ ++R G+ Sbjct: 177 PFGEFCRQSIEQYLREFKP--IQHTKHSFLLVNMNGAPITERGV--RYVLNDVVKRTAGV 232 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++ + ++Y Sbjct: 233 T-EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQ----LRKVYLN 287 Query: 317 THPSITQKDK 326 HP ++ K Sbjct: 288 AHPRAKKESK 297 >gi|254362734|ref|ZP_04978818.1| site-specific recombinase XerC [Mannheimia haemolytica PHL213] gi|261491877|ref|ZP_05988456.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494653|ref|ZP_05991133.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2 str. OVINE] gi|153094359|gb|EDN75214.1| site-specific recombinase XerC [Mannheimia haemolytica PHL213] gi|261309618|gb|EEY10841.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2 str. OVINE] gi|261312532|gb|EEY13656.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 303 Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 91/303 (30%), Positives = 154/303 (50%), Gaps = 19/303 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L IE+ +S TL +Y+ RQ + +++ I+ ++ + +R +S+ Q + Sbjct: 18 LRIEKQVSPHTLSNYQ---RQLMAVSELFSQ--AGIENWEEVESSSVRWMLSQSHKQGLS 72 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 +S+ L ++ + YL K + + L +++ K LP+ ++ +Q V +L Sbjct: 73 AKSIGLRLVALRQWFVYLIKIGRMSANPTLGVKSPKVGKHLPKNIDAEQ----VGQLLAI 128 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 S E D R+ A++ L+Y GLR+SE L ++ +R+QGKG K RIVP+ Sbjct: 129 ESDEPS--DIRDIAMMELMYSSGLRLSELQGLDLGDMDLSAREVRVQGKGSKERIVPIGS 186 Query: 205 SVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 KA+ + ++ F N +F RG L+ Q +++ GL H Sbjct: 187 QALKALNRWLEMRLQFKPQDN---AVFLNKRGGRLSHRSIQLAMKKWGERQGLESHLHPH 243 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323 LRHSFATH+L GDLR++Q +LGH LSTTQIYT+++ ++ + +IYD HP + Sbjct: 244 KLRHSFATHMLEASGDLRAVQELLGHSSLSTTQIYTHLDFQH----LAKIYDSAHPRARR 299 Query: 324 KDK 326 K + Sbjct: 300 KQE 302 >gi|229544386|ref|ZP_04433444.1| tyrosine recombinase XerC [Bacillus coagulans 36D1] gi|229324871|gb|EEN90548.1| tyrosine recombinase XerC [Bacillus coagulans 36D1] Length = 300 Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 87/313 (27%), Positives = 152/313 (48%), Gaps = 38/313 (12%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++++ +++E+ S T++ Y D F FL I ++ ++ Y R +++ Sbjct: 11 SFMEYMQVEKNYSAYTIKFYRLDLEDFFAFLT-----AQGIASLDEVGYPAGRLYLTMLH 65 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 ++ R +S I+SF K+L + +I E+ + K+ LP+ E++ Sbjct: 66 EHGYSRATVARKISSIRSFFKFLMRERIVKENPFALLSQPKQHKRLPKFFYEEEM----- 120 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 L + RN A+L +LY G+R+SE +++ Q+I + T+ ++GKG K RI Sbjct: 121 EQLFAACEGDDALSRRNRALLEILYATGIRVSECVNIRLQDIDFEFETIHVKGKGKKERI 180 Query: 200 V-----------PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYI 247 V + RK ++ + P+ LF RG L + GV RYI Sbjct: 181 VLFGHFAGEAVSDYMAHARKTLMRGKEDHPY---------LFVNARGGALTDKGV--RYI 229 Query: 248 -RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 ++ + L H LRH+FATHLL++G DLR++Q +LGH LS+TQ+YT+V ++ Sbjct: 230 LNEMIKKAALTGKIHPHMLRHTFATHLLNHGADLRTVQDLLGHESLSSTQVYTHVTKEH- 288 Query: 307 GDWMMEIYDQTHP 319 + + Y HP Sbjct: 289 ---LRQTYMAYHP 298 >gi|332675806|gb|AEE72622.1| tyrosine recombinase XerD [Propionibacterium acnes 266] Length = 306 Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 96/311 (30%), Positives = 159/311 (51%), Gaps = 27/311 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L++L +ERGLS T+Q+Y D ++ +L I ++ +++ ++ F +R Sbjct: 10 EDYLRHLVVERGLSDNTVQAYRRDLLRYQEYLGSRG-----IGSLAEVTRVDVEEF--RR 62 Query: 79 RTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 IG S+ R + +++ ++ M +S LP+AL+ Q + Sbjct: 63 HLDHIGLAPASVTRCVVAVRNLHRFAVGSGQLQADVTAGMSPGTRSRRLPKALSMDQVES 122 Query: 137 LVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNI---MDDQS-TLRIQ 191 L+ + +T ++ R++A+L LLYG G R+SEA +L +I +DD LR+ Sbjct: 123 LL------AAPDTSTVEGLRDAALLELLYGTGARVSEACALDVDDIRPVLDDPDLGLRLI 176 Query: 192 GKGDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 GKGDK RIVPL KA+ + + N + L RG+ L+ IR+ Sbjct: 177 GKGDKERIVPLGSYAAKAVDAWLIRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAVIRR 236 Query: 250 LRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 GL + + H+LRHS+ATHLL G D+R +Q +LGH ++TTQIYT V + D Sbjct: 237 AGEAAGLDVEHLSPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYTLVTA----D 292 Query: 309 WMMEIYDQTHP 319 + E+Y +HP Sbjct: 293 HLREVYRSSHP 303 >gi|49483415|ref|YP_040639.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MRSA252] gi|257425306|ref|ZP_05601731.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus 55/2053] gi|257427967|ref|ZP_05604365.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus 65-1322] gi|257430600|ref|ZP_05606982.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus 68-397] gi|257433360|ref|ZP_05609718.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus E1410] gi|257436202|ref|ZP_05612249.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus M876] gi|282903807|ref|ZP_06311695.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus C160] gi|282905570|ref|ZP_06313425.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus Btn1260] gi|282908545|ref|ZP_06316375.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910824|ref|ZP_06318627.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus WBG10049] gi|282914029|ref|ZP_06321816.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus M899] gi|282918951|ref|ZP_06326686.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus C427] gi|282924074|ref|ZP_06331750.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus C101] gi|283957995|ref|ZP_06375446.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus A017934/97] gi|293501061|ref|ZP_06666912.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus 58-424] gi|293510023|ref|ZP_06668731.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus M809] gi|293526609|ref|ZP_06671294.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus M1015] gi|295427739|ref|ZP_06820371.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591303|ref|ZP_06949941.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus MN8] gi|81651263|sp|Q6GHI3|XERC_STAAR RecName: Full=Tyrosine recombinase xerC gi|49241544|emb|CAG40230.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus MRSA252] gi|257271763|gb|EEV03901.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus 55/2053] gi|257274808|gb|EEV06295.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus 65-1322] gi|257278728|gb|EEV09347.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus 68-397] gi|257281453|gb|EEV11590.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus E1410] gi|257284484|gb|EEV14604.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus M876] gi|282314046|gb|EFB44438.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus C101] gi|282316761|gb|EFB47135.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus C427] gi|282322097|gb|EFB52421.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus M899] gi|282325429|gb|EFB55738.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus WBG10049] gi|282327607|gb|EFB57890.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330862|gb|EFB60376.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus Btn1260] gi|282595425|gb|EFC00389.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus C160] gi|283790144|gb|EFC28961.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus A017934/97] gi|290920681|gb|EFD97744.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus M1015] gi|291096066|gb|EFE26327.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus 58-424] gi|291466967|gb|EFF09485.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus M809] gi|295128097|gb|EFG57731.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576189|gb|EFH94905.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus MN8] gi|312438369|gb|ADQ77440.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus TCH60] gi|315194139|gb|EFU24532.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus CGS00] gi|323441030|gb|EGA98737.1| integrase/recombinase [Staphylococcus aureus O11] gi|323443899|gb|EGB01510.1| integrase/recombinase [Staphylococcus aureus O46] Length = 298 Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 98/322 (30%), Positives = 165/322 (51%), Gaps = 42/322 (13%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 ++ +L L++ER S+ TL+SY+ D QF FL +E + + T Y + R ++S Sbjct: 5 QEAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLE---QEHLQLNT---FEYRDARNYLSY 58 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSLPRALNEKQ 133 + + S+ R +S +++F +Y +T + NI+N + + KK LP+ E++ Sbjct: 59 LYSNHLKRTSVSRKISTLRTFYEYW----MTLDENIINPFVQLVHPKKEKYLPQFFYEEE 114 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L V TS R+ IL LLY G+R+SE +++ Q+I + + + GK Sbjct: 115 MEALFKTVEEDTSK-----SLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGK 169 Query: 194 GDKIRIVPLLPSVRKAILEYYDL------CPFDLNLNIQLPLFRGIRGKPLNP-GVFQRY 246 G K R VP R++I Y + C D L ++G+ + GV RY Sbjct: 170 GSKERFVPFGAYCRQSIENYLEHFKPIQSCNHDF-------LIVNMKGEAITERGV--RY 220 Query: 247 IRQ--LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + ++R G+ H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++ Sbjct: 221 VLNDIVKRTAGVS-EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQ 279 Query: 305 NGGDWMMEIYDQTHPSITQKDK 326 + ++Y HP ++++ Sbjct: 280 Q----LRKVYLNAHPRAKKENE 297 >gi|227549015|ref|ZP_03979064.1| site-specific tyrosine recombinase XerC [Corynebacterium lipophiloflavum DSM 44291] gi|227078925|gb|EEI16888.1| site-specific tyrosine recombinase XerC [Corynebacterium lipophiloflavum DSM 44291] Length = 298 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 83/314 (26%), Positives = 155/314 (49%), Gaps = 24/314 (7%) Query: 9 IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68 + S +L + +++ ++ E+ G S T+++Y D L F + E L+ Sbjct: 4 VRSSQLGEAIEDFAEHAELVLGRSPATVKAYRSDLATLLPFATTFAE----------LTL 53 Query: 69 TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 +RA+++ ++ + +L R S +++F + + + + K + LP Sbjct: 54 PTLRAWLADAVSRGLARSTLARRTSAVRAFSTWACNQGYLQSDPAARLLSPKVNRHLPTV 113 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 + + A LV+ + H + + R+ A+L LLY G+R++E +L ++ + + Sbjct: 114 VEAEAAGELVEAEINDDDHPAETL--RDRAMLELLYATGMRVAELSALDIGDVDLGRGAV 171 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 ++ GKGDK RIVP + A+ + +L + LF G RGK ++ QR +R Sbjct: 172 KVTGKGDKQRIVPFGGAASDAVQRWVSAGRGELAGDTD-ALFVGSRGKRID----QRQVR 226 Query: 249 QLRRYLGLPLST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 ++ + + H+LRHS ATH++ G DLR +Q +LGH L TTQIYT+V+++ Sbjct: 227 RIVERAAVRTGAGEISPHSLRHSAATHMIEGGADLRVVQEMLGHSSLQTTQIYTHVSAQR 286 Query: 306 GGDWMMEIYDQTHP 319 + +YD+ HP Sbjct: 287 ----LKNVYDRAHP 296 >gi|229918620|ref|YP_002887266.1| integrase family protein [Exiguobacterium sp. AT1b] gi|229470049|gb|ACQ71821.1| integrase family protein [Exiguobacterium sp. AT1b] Length = 293 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 89/306 (29%), Positives = 155/306 (50%), Gaps = 17/306 (5%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 L++RQ++L+ +IER LS T +SYE Q+ + ++ QT R+ Y Sbjct: 3 FLEDRQSFLRYCQIERRLSPHTKRSYEQTLDQYAAYCQSTHQDPYDAQTARRYLYVLYE- 61 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 +++ ++ + +S K F K++ R+ E ++ + KK SLP + Sbjct: 62 -------KQLAASTVSQKVSCFKQFGKFMA-REQGGEPLFHDLTSPKKKQSLPTFAVPTE 113 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L++ + + ++ AR+ AI+ +LYG G+R++E + + + S + + GK Sbjct: 114 VEQLLEAA---SRQDDPFLQARDVAIIEVLYGTGIRVAELCGMNLSSFDEVLSFVHVMGK 170 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 G K R VP+ +A+ Y +L + L + LF +G + + +++LR+ Sbjct: 171 GKKERYVPIGQYAVQALQRYIELRK-GVGLPTETALFLSQKGNRMTTDQIRYVMKRLRKD 229 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ T H+LRHSFAT LL G DLR++Q +LGH LSTT YT+V+++ + I Sbjct: 230 SGVHKPLTPHSLRHSFATDLLERGADLRAVQELLGHESLSTTGRYTHVSTER----LRSI 285 Query: 314 YDQTHP 319 Y THP Sbjct: 286 YQATHP 291 >gi|91213336|ref|YP_543322.1| site-specific tyrosine recombinase XerC [Escherichia coli UTI89] gi|117626070|ref|YP_859393.1| site-specific tyrosine recombinase XerC [Escherichia coli APEC O1] gi|218560875|ref|YP_002393788.1| site-specific tyrosine recombinase XerC [Escherichia coli S88] gi|237702820|ref|ZP_04533301.1| tyrosine recombinase xerC [Escherichia sp. 3_2_53FAA] gi|331649636|ref|ZP_08350718.1| tyrosine recombinase XerC [Escherichia coli M605] gi|123084331|sp|Q1R4C3|XERC_ECOUT RecName: Full=Tyrosine recombinase xerC gi|166918885|sp|A1AHX9|XERC_ECOK1 RecName: Full=Tyrosine recombinase xerC gi|254799332|sp|B7MH75|XERC_ECO45 RecName: Full=Tyrosine recombinase xerC gi|91074910|gb|ABE09791.1| integrase/recombinase XerC [Escherichia coli UTI89] gi|115515194|gb|ABJ03269.1| site-specific tyrosine recombinase XerC [Escherichia coli APEC O1] gi|218367644|emb|CAR05429.1| site-specific tyrosine recombinase [Escherichia coli S88] gi|226902991|gb|EEH89250.1| tyrosine recombinase xerC [Escherichia sp. 3_2_53FAA] gi|281180860|dbj|BAI57190.1| recombinase [Escherichia coli SE15] gi|294489806|gb|ADE88562.1| tyrosine recombinase XerC [Escherichia coli IHE3034] gi|307628874|gb|ADN73178.1| site-specific tyrosine recombinase XerC [Escherichia coli UM146] gi|315284713|gb|EFU44158.1| tyrosine recombinase XerC [Escherichia coli MS 110-3] gi|323189763|gb|EFZ75042.1| tyrosine recombinase XerC [Escherichia coli RN587/1] gi|323949305|gb|EGB45195.1| tyrosine recombinase XerC [Escherichia coli H252] gi|323954018|gb|EGB49816.1| tyrosine recombinase XerC [Escherichia coli H263] gi|330908111|gb|EGH36630.1| tyrosine recombinase XerC [Escherichia coli AA86] gi|331041506|gb|EGI13654.1| tyrosine recombinase XerC [Escherichia coli M605] Length = 298 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 92/307 (29%), Positives = 154/307 (50%), Gaps = 17/307 (5%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L + + +L+ L +ER LS +TL +Y+ RQ + F +E +Q+ +Q T +R Sbjct: 3 DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIIHFASEN--GLQSWQQCDVTMVR 57 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F + R + +G SL LS ++SF +L + + + K LP+ ++ Sbjct: 58 NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 L+D + + R+ A+L ++YG GLR+SE + L +++ + + + G Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 KG K R +P+ + I + DL DL + LF GK ++ Q+ + Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 GL H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ + Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285 Query: 313 IYDQTHP 319 +YD HP Sbjct: 286 VYDAAHP 292 >gi|149194285|ref|ZP_01871382.1| Phage integrase [Caminibacter mediatlanticus TB-2] gi|149135460|gb|EDM23939.1| Phage integrase [Caminibacter mediatlanticus TB-2] Length = 275 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 98/307 (31%), Positives = 151/307 (49%), Gaps = 48/307 (15%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ L I +G+SK T ++Y+ D QF EK + I + ++ F+S Sbjct: 6 EAFLEYLLINKGVSKNTYEAYKRDLVQF---------EKFIEKDIIDVDSNDVIRFLS-- 54 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q RSL R LS I SF + KR E ++ K SLP+ L++++ LT + Sbjct: 55 --QIDNKRSLNRKLSAINSFFDFAYKRNYVDEK--FKIKQAKLPKSLPKYLSKEEILTPI 110 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKI 197 H + W + R+ A++ LY GLRISEAL++ +I D +R++ KG+K Sbjct: 111 S----HIDSNSSWFELRDKALILFLYATGLRISEALNIKLSDIED--GWVRVEMAKGEKQ 164 Query: 198 RIVPLLPSVRKAILEYYDLCP-----FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 R+VP+ KAI EY P +N N + R N + ++Y Sbjct: 165 RLVPIADVALKAIEEYLAKRPCRSEYLFVNKNCN----KLSRISAFN--ITKKY------ 212 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 L+ + H LRHSFAT L+ DLR +Q +LGH L+TTQIYT++ +N D ++ Sbjct: 213 -----LAVSPHVLRHSFATSLVLGNADLRVVQELLGHASLNTTQIYTHIQKENLKDTIL- 266 Query: 313 IYDQTHP 319 + HP Sbjct: 267 ---KYHP 270 >gi|282879077|ref|ZP_06287837.1| putative tyrosine recombinase XerD [Prevotella buccalis ATCC 35310] gi|281298811|gb|EFA91220.1| putative tyrosine recombinase XerD [Prevotella buccalis ATCC 35310] Length = 321 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 85/286 (29%), Positives = 152/286 (53%), Gaps = 12/286 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++ + L++ER S TL +Y+ D L+F +++I+ +R +++ F + Sbjct: 13 KSYTRYLKLERNYSPNTLIAYQND---LGWLLSFCEQQEISPLDVR---LEDLQHFAGQL 66 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 IG S R LSG++SF ++L + + + + LP L+ ++ + Sbjct: 67 HEHDIGPTSQARILSGVRSFYRFLVLDGYIEQDPTELLESPRLGEHLPEVLSTEEVDMIE 126 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 +++ L +K RN AI+ +L+ CGLR+SE ++L N+ D+ +R+ GKG+K R Sbjct: 127 NSIDL-----SKPEGQRNKAIIEVLFSCGLRVSELVNLQLSNLYLDEGFIRVTGKGNKER 181 Query: 199 IVPLLPSVRKAI-LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ P K + L + D + Q +F RG L + +++ + G+ Sbjct: 182 LVPISPKAIKELNLWFLDRNLMKIKPGEQDYVFLNRRGAHLTRTMILIMLKRQAQEAGIQ 241 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + + HTLRHSFAT LL G DLR+IQ +LGH + TT+IYT++++ Sbjct: 242 KTISPHTLRHSFATELLKGGADLRAIQVMLGHESIGTTEIYTHIDT 287 >gi|332184625|gb|AEE26879.1| site-specific recombinase [Francisella cf. novicida 3523] Length = 292 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 92/314 (29%), Positives = 162/314 (51%), Gaps = 29/314 (9%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 L+ N+L+NL + S+ T+ +Y+ D Q + + + I L+Y++I + Sbjct: 4 LEHINNFLENLLYLKNYSQETINNYQKDLLQL--------NQALNDKNITSLTYSDILIW 55 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 I K Q ++L+R LS ++SF +L +I T++ ++ K S LP+ +N + Sbjct: 56 IKKLHAQGNSPKTLQRKLSSVRSFFNFLINSEIVTQNPASGIKAPKSSKRLPKVVNTDEL 115 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 L+D ++ S++ I+AR+ A LLY CG+R+SE S+ ++I Q ++R+ GKG Sbjct: 116 AYLLD---VNPSND---IEARDIACFDLLYSCGIRLSELSSIELKDISISQKSIRVTGKG 169 Query: 195 DKIRIVPLLPSVRKAI---LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL- 250 +K RI P + L+ D + N LF GK L Q+ + Sbjct: 170 NKQRITYFGPKTLSNLDRWLKIRDTLKPNCNY-----LFISRDGKHLTNRSIQKRLEIFS 224 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 ++Y + H LRHSFA+H+L + DL +++ +LGH +S+TQIYT++N + + Sbjct: 225 QKYASRHIH--PHMLRHSFASHMLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQ----L 278 Query: 311 MEIYDQTHPSITQK 324 ++D+ HP +K Sbjct: 279 ANVFDKAHPRAKKK 292 >gi|83859702|ref|ZP_00953222.1| integrase/recombinase XerD [Oceanicaulis alexandrii HTCC2633] gi|83852061|gb|EAP89915.1| integrase/recombinase XerD [Oceanicaulis alexandrii HTCC2633] Length = 311 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 93/292 (31%), Positives = 140/292 (47%), Gaps = 22/292 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L + ERG ++ TL +Y D L + + QT ++ F+S + Sbjct: 9 FLDMMAAERGAARNTLDAYRRDLEDAAQRLGAHGTGLESAQT------ADVERFLSDLAS 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + R LS +K + ++L K + + + KK LP+ L+E Q TL D Sbjct: 63 DGLSPATAARRLSALKRYYRFLLKEGLRADDPAKTLSGPKKPRPLPKVLSEGQVETLFD- 121 Query: 141 VLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + + D R A+L LLY GLR+SE ++L + L + GKG K R+ Sbjct: 122 ----AADRIEGADGFRLRALLELLYAGGLRVSELVTLPLAAFARSERCLVVTGKGGKERL 177 Query: 200 VPLLPSVRKAILEY----YDLCPFDLNLNIQLP---LF--RGIRGKPLNPGVFQRYIRQL 250 VPL S +A+ Y D P + + LF R R L F + ++ L Sbjct: 178 VPLTDSAIRAVEAYKAVRADHLPSRAAVTHAVASRYLFPSRTARDGHLTRERFAQLLKAL 237 Query: 251 RRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 GL P + H +RH+FATHLL+NG DLRS+QS+LGH +STT+IYT+V Sbjct: 238 SLAAGLDPQQVSPHVMRHAFATHLLANGADLRSVQSLLGHADVSTTEIYTHV 289 >gi|46143623|ref|ZP_00134812.2| COG4973: Site-specific recombinase XerC [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|190151161|ref|YP_001969686.1| tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303250058|ref|ZP_07336260.1| site-specific tyrosine recombinase XerC [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303253232|ref|ZP_07339381.1| site-specific tyrosine recombinase XerC [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|254799324|sp|B3GZ58|XERC_ACTP7 RecName: Full=Tyrosine recombinase xerC gi|189916292|gb|ACE62544.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302647914|gb|EFL78121.1| site-specific tyrosine recombinase XerC [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302651121|gb|EFL81275.1| site-specific tyrosine recombinase XerC [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 306 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 90/305 (29%), Positives = 159/305 (52%), Gaps = 19/305 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L IE+ S+ TL +Y+ RQ L ++ I+ T ++++ +R I++ Q +G Sbjct: 19 LRIEKQASQHTLSNYQ---RQLLAVSDMLSQAGIS--TWQEVNSATVRWIIAQSNKQGLG 73 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 +S+ L ++ + YL +++ + + + ++ K S LP+ ++ +Q + +L Sbjct: 74 AKSIALRLVALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQ----IGQLLTS 129 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 SHE D R+ A++ L+Y GLR+SE L ++ +R+ GKG+K RIVP+ Sbjct: 130 DSHEPS--DLRDLAMMELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGS 187 Query: 205 SVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 +A+ + + F N +F RG L+ Q +++ GL H Sbjct: 188 KALEALNRWLAVRNQFKPQDN---AVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPH 244 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323 LRHSFATH+L GDLR++Q +LGH L+TTQIYT+++ ++ + +IYD HP + Sbjct: 245 KLRHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQH----LAKIYDAAHPRAKR 300 Query: 324 KDKKN 328 K + + Sbjct: 301 KKQDD 305 >gi|301169393|emb|CBW28993.1| site-specific tyrosine recombinase [Haemophilus influenzae 10810] Length = 295 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 94/304 (30%), Positives = 152/304 (50%), Gaps = 25/304 (8%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L IER +S T+ +Y+ + LA + I + Q++ + +R +++ + Q + Sbjct: 12 LRIERQMSPHTITNYQHQLDATIKILA-----QQDIHSWTQVTPSVVRFILAESKKQGLK 66 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 ++SL LS ++ FL +L ++ + + K+ LP+ ++ +Q + +L + Sbjct: 67 EKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQ----IQQLLAN 122 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 S E ID R+ AIL L+Y GLR+SE L +I +R+ GKG+K R+VP Sbjct: 123 DSKEP--IDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGR 180 Query: 205 SVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 AI E+ + P D LF G ++ Q+ + GL Sbjct: 181 YASHAIQEWLKVRALFNPKDE------ALFVSQLGNRISHRAIQKRLETWGIRQGLNSHL 234 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 H LRHSFATH+L DLR++Q +LGH LSTTQIYT++N ++ + E+YDQ HP Sbjct: 235 NPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEVYDQAHPR 290 Query: 321 ITQK 324 +K Sbjct: 291 AKRK 294 >gi|114561634|ref|YP_749147.1| tyrosine recombinase XerC [Shewanella frigidimarina NCIMB 400] gi|114332927|gb|ABI70309.1| tyrosine recombinase XerC [Shewanella frigidimarina NCIMB 400] Length = 299 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 92/300 (30%), Positives = 155/300 (51%), Gaps = 23/300 (7%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 Q+L ER LS T+++Y + R+ LA T+ + ++S ++++ ++ + Sbjct: 12 QHLSSERQLSAYTVRNYLFELRRVEDMLAESTQ-------LIEVSRDQLQSVMATLHRKG 64 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV- 141 + RSL LS +K F +L + T S + K++ LP+ ++ VD V Sbjct: 65 LSPRSLSLCLSALKQFFDFLLREGAVTVSPAQTLSAPKQNKPLPKNMD-------VDAVS 117 Query: 142 -LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LL + + R+ AI+ L Y GLR++E SL +I DQS +++ GKG K R+V Sbjct: 118 HLLSIEGDDP-LSLRDKAIMELFYSSGLRLAELASLDCVDIKFDQSEVKVMGKGSKQRVV 176 Query: 201 PLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ AI + + C L+ + LF +GK L+ Q + + + + + Sbjct: 177 PIGQVALTAIKTWLN-CRNQLSCVEAGDALFVSSQGKRLSHRSIQARMAKWGQEQAMAVK 235 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHSFATH+L + DLR++Q +LGH LSTTQIYT+++ ++ + ++YD HP Sbjct: 236 VHPHKLRHSFATHMLESSQDLRAVQELLGHANLSTTQIYTSLDFQH----LAKVYDNAHP 291 >gi|326799802|ref|YP_004317621.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21] gi|326550566|gb|ADZ78951.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21] Length = 293 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 99/307 (32%), Positives = 163/307 (53%), Gaps = 25/307 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + ++ L E+ S+ TL++YE D R +L F+ E+I+ + ++ + ++R ++S Sbjct: 4 ERFMSFLRFEKHYSEHTLKAYEKDVRSYL---QFWVAEQISFE---EVGHKQLRYYLSIL 57 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S+ R LS ++++ K+L++ + + L ++ LKK LP + E + Sbjct: 58 MDSGLEASSINRILSSLRTYYKFLQRESLYGANPTLLVKALKKPKKLPVVIQEDKL---- 113 Query: 139 DNVLLHTSH--ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 N LL H + + R+ I+ LL+G G+R++E + L ++I T+RI GK +K Sbjct: 114 -NQLLDHDHIFQDNFEGQRDRLIIELLFGTGMRLTELIQLQEKDIDYYNQTIRILGKRNK 172 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG-VFQRYIRQLRRYLG 255 RIVP+LP ++ I +Y L + N L L I+GK P ++Q IR YL Sbjct: 173 ERIVPMLPHLKLLIEQYLKLKKIENLDNNSLTLVVTIKGKQAYPKLIYQVVIR----YLS 228 Query: 256 LPLS---TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 L S + H LRHSFAT LL+ G DL +I+ +LGH L TQ+YT+ N + + Sbjct: 229 LITSQQKKSPHVLRHSFATALLNKGADLNAIKELLGHANLVATQVYTH----NSVERLKS 284 Query: 313 IYDQTHP 319 IY Q HP Sbjct: 285 IYKQAHP 291 >gi|300725867|ref|ZP_07059331.1| tyrosine recombinase XerD [Prevotella bryantii B14] gi|299776855|gb|EFI73401.1| tyrosine recombinase XerD [Prevotella bryantii B14] Length = 304 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 93/300 (31%), Positives = 146/300 (48%), Gaps = 24/300 (8%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L++E S TL++Y D R L F + + I + ++ F + + IG Sbjct: 19 LKLECNYSANTLEAYRHDIRYLLEFFEEHQQNPIDAK------LEDLELFATSIHEKGIG 72 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 RS R LSG++SF ++L+ + + + LP L ++ L ++ L Sbjct: 73 ARSQARILSGVRSFYRFLQLEGYIKDDPTELLESPHLGEHLPTYLTTEEVDRLEASIDL- 131 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 +KW RN AI+ +L+ CGLR+SE ++L N D+ +R+ GKG K R+VP+ Sbjct: 132 ----SKWEGQRNKAIIEVLFSCGLRVSELVNLKISNCFMDEKFVRVLGKGSKERLVPISE 187 Query: 205 SVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 + + + + D NL + P LF RG L + I++ G+ Sbjct: 188 NAIREV----NYWLMDRNLMVIKPGEEDYLFLNRRGSHLTRTMILIMIKRQAVAAGITKI 243 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRHSFAT LL G DLR+IQ +LGH + TT+IYT++ + D EI + HP Sbjct: 244 ISPHTLRHSFATALLKGGADLRAIQVMLGHEDIGTTEIYTHMET---SDLKREILEH-HP 299 >gi|219683210|ref|YP_002469593.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis subsp. lactis AD011] gi|219620860|gb|ACL29017.1| probable integrase [Bifidobacterium animalis subsp. lactis AD011] Length = 344 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 92/317 (29%), Positives = 147/317 (46%), Gaps = 32/317 (10%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE---EK 57 MEG + ++L ER +++ L RGLS+ T +Y D Q L L + + Sbjct: 30 MEG-----AMDAQVLMER--FIEYLRSNRGLSEHTCMAYRGDILQCLEALDAFGRGNPDD 82 Query: 58 ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117 +T+ +R R +G SL R ++SF + + + + +R Sbjct: 83 VTLDDLR---------MWMGRMAHTVGKTSLARKTIAVRSFFTWAYEHGMLAHNPAHALR 133 Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW---IDA--------RNSAILYLLYGC 166 K +LP LNE QA L+D V + DA R+ A+L LLY Sbjct: 134 TPKIDRNLPAVLNEDQAERLMDTVDAEAGEKNAGKSKDDALNAHAKALRDCAMLELLYAT 193 Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNI 225 G+R+ E + L + T+R+ GKG+K R++P ++A+ + + P N N Sbjct: 194 GMRVGELVGLDMGSFDWSNRTVRVLGKGNKTRVIPFGAPAQQAVEHWLHGGRPVFANGNS 253 Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285 +F G+RG ++ V ++ + + G+P + H LRHS ATH+L G DLR +Q Sbjct: 254 GNAVFIGVRGCRIDQRVVRQVVHEQAEQAGVP-DISPHALRHSAATHMLDGGADLREVQE 312 Query: 286 ILGHFRLSTTQIYTNVN 302 +LGH L TTQ Y +V+ Sbjct: 313 MLGHSSLQTTQRYAHVS 329 >gi|297626642|ref|YP_003688405.1| integrase/recombinase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922407|emb|CBL56979.1| Integrase/recombinase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 308 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 89/301 (29%), Positives = 146/301 (48%), Gaps = 22/301 (7%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L ++R S T ++Y D R+ +FL + + + T++R +++ ++ + Sbjct: 22 LRLQRRRSANTERAYLTDLRELALFL-----QGRGVHDPDHVRLTDLRRWLASQQASEA- 75 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 ++ R + F + ++ +R+ K LP+ L + + L+D Sbjct: 76 PATVARRAGTARVFFGWARETGRLGTDPAAGLRSPKLGRRLPQTLTQTEVRELMDAAAAA 135 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL-L 203 + R+ AIL LYG GLR+SE L ++ + + +R+ GKGDK RIVPL L Sbjct: 136 AAEAGGVRGLRDVAILETLYGSGLRVSELCGLDVGDLDEARGLVRVIGKGDKERIVPLGL 195 Query: 204 PSVR-----KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 P +R +A+ + + + P N LF G RG +N V +R + + R + Sbjct: 196 PGLRAIDAWRAVRDQW-VAPASANA-----LFLGTRGGRINQRVVRRVVHESMRAVPEAP 249 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 H LRH+ ATHLL G DLRS+Q +LGH LSTTQIYT+V+ + + Y+Q Sbjct: 250 DIGPHGLRHAMATHLLEGGADLRSVQEMLGHASLSTTQIYTHVSDER----VRAAYEQAF 305 Query: 319 P 319 P Sbjct: 306 P 306 >gi|37197590|dbj|BAC93429.1| site-specific recombinase XerD [Vibrio vulnificus YJ016] Length = 307 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 94/305 (30%), Positives = 151/305 (49%), Gaps = 21/305 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA--FYTEEKITIQTIRQLSYTEIRAFIS 76 + +L + +ERGL++ TL SY D + L ++ Y + I++ ++Q + S Sbjct: 18 EQFLDAMWMERGLAENTLASYRNDLMKLLQWMEANHYRLDFISLSGLQQ--------YQS 69 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 Q S R LS I+ +YL + K+ + + + K LP+ ++E+Q Sbjct: 70 YLVDQDYKQTSRARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQV-- 127 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 + LL ++ R+ A+L LLY GLR++E +SLT +NI Q +R+ GKG K Sbjct: 128 ---DALLDAPDPNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGK 184 Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 R+VP+ + I + P L +F R + + F I+ G Sbjct: 185 ERLVPMGENAIDWIETFIKQGRPALLGETSSDVVFPSKRARQMTRQTFWHRIKFYAVIAG 244 Query: 256 LPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 + + H LRH+FATHLL+ G DLR +Q +LGH LSTTQIYT+V ++ + +I+ Sbjct: 245 IDTDHLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIH 300 Query: 315 DQTHP 319 Q HP Sbjct: 301 SQHHP 305 >gi|16131663|ref|NP_418256.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. MG1655] gi|26250551|ref|NP_756591.1| site-specific tyrosine recombinase XerC [Escherichia coli CFT073] gi|74314323|ref|YP_312742.1| site-specific tyrosine recombinase XerC [Shigella sonnei Ss046] gi|82546162|ref|YP_410109.1| site-specific tyrosine recombinase XerC [Shigella boydii Sb227] gi|89110208|ref|AP_003988.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. W3110] gi|157163288|ref|YP_001460606.1| site-specific tyrosine recombinase XerC [Escherichia coli HS] gi|170022166|ref|YP_001727120.1| site-specific tyrosine recombinase XerC [Escherichia coli ATCC 8739] gi|170083293|ref|YP_001732613.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. DH10B] gi|170683603|ref|YP_001746128.1| site-specific tyrosine recombinase XerC [Escherichia coli SMS-3-5] gi|187731086|ref|YP_001882505.1| site-specific tyrosine recombinase XerC [Shigella boydii CDC 3083-94] gi|188496206|ref|ZP_03003476.1| tyrosine recombinase XerC [Escherichia coli 53638] gi|191166069|ref|ZP_03027904.1| tyrosine recombinase XerC [Escherichia coli B7A] gi|193065702|ref|ZP_03046767.1| tyrosine recombinase XerC [Escherichia coli E22] gi|194429226|ref|ZP_03061754.1| tyrosine recombinase XerC [Escherichia coli B171] gi|209921289|ref|YP_002295373.1| site-specific tyrosine recombinase XerC [Escherichia coli SE11] gi|218550965|ref|YP_002384756.1| site-specific tyrosine recombinase XerC [Escherichia fergusonii ATCC 35469] gi|218692087|ref|YP_002400299.1| site-specific tyrosine recombinase XerC [Escherichia coli ED1a] gi|218697529|ref|YP_002405196.1| site-specific tyrosine recombinase XerC [Escherichia coli 55989] gi|218701275|ref|YP_002408904.1| site-specific tyrosine recombinase XerC [Escherichia coli IAI39] gi|218707445|ref|YP_002414964.1| site-specific tyrosine recombinase XerC [Escherichia coli UMN026] gi|227888604|ref|ZP_04006409.1| site-specific tyrosine recombinase [Escherichia coli 83972] gi|238902887|ref|YP_002928683.1| site-specific tyrosine recombinase [Escherichia coli BW2952] gi|254039023|ref|ZP_04873074.1| tyrosine recombinase xerC [Escherichia sp. 1_1_43] gi|256021445|ref|ZP_05435310.1| site-specific tyrosine recombinase XerC [Shigella sp. D9] gi|256026158|ref|ZP_05440023.1| site-specific tyrosine recombinase XerC [Escherichia sp. 4_1_40B] gi|260846413|ref|YP_003224191.1| site-specific tyrosine recombinase XerC [Escherichia coli O103:H2 str. 12009] gi|260857783|ref|YP_003231674.1| site-specific tyrosine recombinase XerC [Escherichia coli O26:H11 str. 11368] gi|260870536|ref|YP_003236938.1| site-specific tyrosine recombinase XerC [Escherichia coli O111:H- str. 11128] gi|293407438|ref|ZP_06651358.1| xerC [Escherichia coli FVEC1412] gi|293413253|ref|ZP_06655915.1| tyrosine recombinase XerC [Escherichia coli B354] gi|293468129|ref|ZP_06664541.1| tyrosine recombinase XerC [Escherichia coli B088] gi|298383178|ref|ZP_06992772.1| tyrosine recombinase xerC [Escherichia coli FVEC1302] gi|300818718|ref|ZP_07098925.1| tyrosine recombinase XerC [Escherichia coli MS 107-1] gi|300823347|ref|ZP_07103478.1| tyrosine recombinase XerC [Escherichia coli MS 119-7] gi|300900639|ref|ZP_07118797.1| tyrosine recombinase XerC [Escherichia coli MS 198-1] gi|300939969|ref|ZP_07154597.1| tyrosine recombinase XerC [Escherichia coli MS 21-1] gi|300950424|ref|ZP_07164346.1| tyrosine recombinase XerC [Escherichia coli MS 116-1] gi|300955183|ref|ZP_07167580.1| tyrosine recombinase XerC [Escherichia coli MS 175-1] gi|300985705|ref|ZP_07177560.1| tyrosine recombinase XerC [Escherichia coli MS 45-1] gi|301025744|ref|ZP_07189259.1| tyrosine recombinase XerC [Escherichia coli MS 69-1] gi|301029028|ref|ZP_07192182.1| tyrosine recombinase XerC [Escherichia coli MS 196-1] gi|301047307|ref|ZP_07194393.1| tyrosine recombinase XerC [Escherichia coli MS 185-1] gi|301646121|ref|ZP_07246021.1| tyrosine recombinase XerC [Escherichia coli MS 146-1] gi|307140510|ref|ZP_07499866.1| site-specific tyrosine recombinase XerC [Escherichia coli H736] gi|307313615|ref|ZP_07593235.1| tyrosine recombinase XerC [Escherichia coli W] gi|331644544|ref|ZP_08345664.1| tyrosine recombinase XerC [Escherichia coli H736] gi|331660156|ref|ZP_08361092.1| tyrosine recombinase XerC [Escherichia coli TA206] gi|331670657|ref|ZP_08371494.1| tyrosine recombinase XerC [Escherichia coli TA271] gi|331679921|ref|ZP_08380584.1| tyrosine recombinase XerC [Escherichia coli H591] gi|331685531|ref|ZP_08386115.1| tyrosine recombinase XerC [Escherichia coli H299] gi|332282681|ref|ZP_08395094.1| tyrosine recombinase xerC [Shigella sp. D9] gi|67475542|sp|P0A8P6|XERC_ECOLI RecName: Full=Tyrosine recombinase xerC gi|67475545|sp|P0A8P7|XERC_ECOL6 RecName: Full=Tyrosine recombinase xerC gi|123728303|sp|Q31UH7|XERC_SHIBS RecName: Full=Tyrosine recombinase xerC gi|123732258|sp|Q3YVF5|XERC_SHISS RecName: Full=Tyrosine recombinase xerC gi|166918884|sp|A8A6R9|XERC_ECOHS RecName: Full=Tyrosine recombinase xerC gi|189030076|sp|B1IW93|XERC_ECOLC RecName: Full=Tyrosine recombinase xerC gi|254799333|sp|B7L968|XERC_ECO55 RecName: Full=Tyrosine recombinase xerC gi|254799335|sp|B7NTD1|XERC_ECO7I RecName: Full=Tyrosine recombinase xerC gi|254799336|sp|B7N2A1|XERC_ECO81 RecName: Full=Tyrosine recombinase xerC gi|254799338|sp|B1XAH7|XERC_ECODH RecName: Full=Tyrosine recombinase xerC gi|254799339|sp|B7NFB3|XERC_ECOLU RecName: Full=Tyrosine recombinase xerC gi|254799340|sp|B6I4F2|XERC_ECOSE RecName: Full=Tyrosine recombinase xerC gi|254799341|sp|B1LLY2|XERC_ECOSM RecName: Full=Tyrosine recombinase xerC gi|254799342|sp|B7LU45|XERC_ESCF3 RecName: Full=Tyrosine recombinase xerC gi|254799357|sp|B2TUW7|XERC_SHIB3 RecName: Full=Tyrosine recombinase xerC gi|259710430|sp|C4ZZ74|XERC_ECOBW RecName: Full=Tyrosine recombinase xerC gi|26110981|gb|AAN83165.1|AE016769_280 Integrase/recombinase xerC [Escherichia coli CFT073] gi|148270|gb|AAA24763.1| lambda-integrase [Escherichia coli] gi|1790244|gb|AAC76814.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. MG1655] gi|73857800|gb|AAZ90507.1| site-specific recombinase, acts on cer sequence of ColE1, effects chromosome segregation at cell division [Shigella sonnei Ss046] gi|81247573|gb|ABB68281.1| site-specific recombinase [Shigella boydii Sb227] gi|85676239|dbj|BAE77489.1| site-specific tyrosine recombinase [Escherichia coli str. K12 substr. W3110] gi|157068968|gb|ABV08223.1| tyrosine recombinase XerC [Escherichia coli HS] gi|169757094|gb|ACA79793.1| tyrosine recombinase XerC [Escherichia coli ATCC 8739] gi|169891128|gb|ACB04835.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. DH10B] gi|170521321|gb|ACB19499.1| tyrosine recombinase XerC [Escherichia coli SMS-3-5] gi|187428078|gb|ACD07352.1| tyrosine recombinase XerC [Shigella boydii CDC 3083-94] gi|188491405|gb|EDU66508.1| tyrosine recombinase XerC [Escherichia coli 53638] gi|190903845|gb|EDV63559.1| tyrosine recombinase XerC [Escherichia coli B7A] gi|192926669|gb|EDV81298.1| tyrosine recombinase XerC [Escherichia coli E22] gi|194412738|gb|EDX29032.1| tyrosine recombinase XerC [Escherichia coli B171] gi|209914548|dbj|BAG79622.1| recombinase [Escherichia coli SE11] gi|218354261|emb|CAV00939.1| site-specific tyrosine recombinase [Escherichia coli 55989] gi|218358506|emb|CAQ91153.1| site-specific tyrosine recombinase [Escherichia fergusonii ATCC 35469] gi|218371261|emb|CAR19095.1| site-specific tyrosine recombinase [Escherichia coli IAI39] gi|218429651|emb|CAR10472.1| site-specific tyrosine recombinase [Escherichia coli ED1a] gi|218434542|emb|CAR15469.1| site-specific tyrosine recombinase [Escherichia coli UMN026] gi|226838714|gb|EEH70742.1| tyrosine recombinase xerC [Escherichia sp. 1_1_43] gi|227834443|gb|EEJ44909.1| site-specific tyrosine recombinase [Escherichia coli 83972] gi|238863558|gb|ACR65556.1| site-specific tyrosine recombinase [Escherichia coli BW2952] gi|257756432|dbj|BAI27934.1| site-specific tyrosine recombinase XerC [Escherichia coli O26:H11 str. 11368] gi|257761560|dbj|BAI33057.1| site-specific tyrosine recombinase XerC [Escherichia coli O103:H2 str. 12009] gi|257766892|dbj|BAI38387.1| site-specific tyrosine recombinase XerC [Escherichia coli O111:H- str. 11128] gi|260451346|gb|ACX41768.1| tyrosine recombinase XerC [Escherichia coli DH1] gi|291321507|gb|EFE60945.1| tyrosine recombinase XerC [Escherichia coli B088] gi|291425549|gb|EFE98587.1| xerC [Escherichia coli FVEC1412] gi|291468201|gb|EFF10698.1| tyrosine recombinase XerC [Escherichia coli B354] gi|298276414|gb|EFI17933.1| tyrosine recombinase xerC [Escherichia coli FVEC1302] gi|299878022|gb|EFI86233.1| tyrosine recombinase XerC [Escherichia coli MS 196-1] gi|300300826|gb|EFJ57211.1| tyrosine recombinase XerC [Escherichia coli MS 185-1] gi|300317900|gb|EFJ67684.1| tyrosine recombinase XerC [Escherichia coli MS 175-1] gi|300355855|gb|EFJ71725.1| tyrosine recombinase XerC [Escherichia coli MS 198-1] gi|300395867|gb|EFJ79405.1| tyrosine recombinase XerC [Escherichia coli MS 69-1] gi|300407979|gb|EFJ91517.1| tyrosine recombinase XerC [Escherichia coli MS 45-1] gi|300450231|gb|EFK13851.1| tyrosine recombinase XerC [Escherichia coli MS 116-1] gi|300455173|gb|EFK18666.1| tyrosine recombinase XerC [Escherichia coli MS 21-1] gi|300524133|gb|EFK45202.1| tyrosine recombinase XerC [Escherichia coli MS 119-7] gi|300528684|gb|EFK49746.1| tyrosine recombinase XerC [Escherichia coli MS 107-1] gi|301075647|gb|EFK90453.1| tyrosine recombinase XerC [Escherichia coli MS 146-1] gi|306906596|gb|EFN37108.1| tyrosine recombinase XerC [Escherichia coli W] gi|307555937|gb|ADN48712.1| integrase/recombinase XerC [Escherichia coli ABU 83972] gi|309704246|emb|CBJ03594.1| tyrosine recombinase [Escherichia coli ETEC H10407] gi|315063103|gb|ADT77430.1| site-specific tyrosine recombinase [Escherichia coli W] gi|315138388|dbj|BAJ45547.1| xerC [Escherichia coli DH1] gi|315293146|gb|EFU52498.1| tyrosine recombinase XerC [Escherichia coli MS 153-1] gi|315296792|gb|EFU56084.1| tyrosine recombinase XerC [Escherichia coli MS 16-3] gi|320185472|gb|EFW60241.1| Tyrosine recombinase XerC [Shigella flexneri CDC 796-83] gi|320198482|gb|EFW73083.1| Tyrosine recombinase XerC [Escherichia coli EC4100B] gi|323155217|gb|EFZ41401.1| tyrosine recombinase XerC [Escherichia coli EPECa14] gi|323161125|gb|EFZ47043.1| tyrosine recombinase XerC [Escherichia coli E128010] gi|323173426|gb|EFZ59055.1| tyrosine recombinase XerC [Escherichia coli LT-68] gi|323177824|gb|EFZ63408.1| tyrosine recombinase XerC [Escherichia coli 1180] gi|323182583|gb|EFZ67987.1| tyrosine recombinase XerC [Escherichia coli 1357] gi|323380833|gb|ADX53101.1| tyrosine recombinase XerC [Escherichia coli KO11] gi|323934199|gb|EGB30630.1| tyrosine recombinase XerC [Escherichia coli E1520] gi|323938947|gb|EGB35166.1| tyrosine recombinase XerC [Escherichia coli E482] gi|323943787|gb|EGB39882.1| tyrosine recombinase XerC [Escherichia coli H120] gi|324016212|gb|EGB85431.1| tyrosine recombinase XerC [Escherichia coli MS 117-3] gi|324111036|gb|EGC05023.1| tyrosine recombinase XerC [Escherichia fergusonii B253] gi|324115726|gb|EGC09661.1| tyrosine recombinase XerC [Escherichia coli E1167] gi|331036216|gb|EGI08451.1| tyrosine recombinase XerC [Escherichia coli H736] gi|331052724|gb|EGI24759.1| tyrosine recombinase XerC [Escherichia coli TA206] gi|331062130|gb|EGI34052.1| tyrosine recombinase XerC [Escherichia coli TA271] gi|331072468|gb|EGI43800.1| tyrosine recombinase XerC [Escherichia coli H591] gi|331077232|gb|EGI48446.1| tyrosine recombinase XerC [Escherichia coli H299] gi|332089061|gb|EGI94172.1| tyrosine recombinase XerC [Shigella boydii 3594-74] gi|332105033|gb|EGJ08379.1| tyrosine recombinase xerC [Shigella sp. D9] gi|332345790|gb|AEE59124.1| tyrosine recombinase XerC [Escherichia coli UMNK88] Length = 298 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 92/307 (29%), Positives = 154/307 (50%), Gaps = 17/307 (5%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L + + +L+ L +ER LS +TL +Y+ RQ + F +E +Q+ +Q T +R Sbjct: 3 DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIINFASEN--GLQSWQQCDVTMVR 57 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F + R + +G SL LS ++SF +L + + + K LP+ ++ Sbjct: 58 NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 L+D + + R+ A+L ++YG GLR+SE + L +++ + + + G Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 KG K R +P+ + I + DL DL + LF GK ++ Q+ + Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 GL H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ + Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285 Query: 313 IYDQTHP 319 +YD HP Sbjct: 286 VYDAAHP 292 >gi|229820647|ref|YP_002882173.1| tyrosine recombinase XerD [Beutenbergia cavernae DSM 12333] gi|229566560|gb|ACQ80411.1| tyrosine recombinase XerD [Beutenbergia cavernae DSM 12333] Length = 311 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 93/313 (29%), Positives = 156/313 (49%), Gaps = 22/313 (7%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 ++ +++L +L +ERGLS TL +Y D ++ +L +++ + ++ A++ Sbjct: 8 RDLEDYLAHLGVERGLSPHTLAAYRRDLSRYAAYLGALGRARLS-----DVRPADVDAYV 62 Query: 76 SKRRTQKIGDRSLKRSLSGIK-----SFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 RT G +L S + + ++ I +++R + LP+A+ Sbjct: 63 EALRTGSDGGSALSASSASRAVVAVRGWHRFAMLEGIAPSDPAVDVRPPSTTKRLPKAI- 121 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT--PQNIMDDQSTL 188 A+ V+ +L+ S R+ A+L LLYG G RI+EA SL ++ DD ++ Sbjct: 122 ---AVEDVERLLVAASAGDGPGPLRDRALLELLYGTGARITEATSLAVDDIDLDDDAGSV 178 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLP-LFRGIRGKPLNPGVFQRY 246 R+ GKG + R+VPL R A+ Y P P LF G+RG+PL+ Sbjct: 179 RLFGKGRRERVVPLGRFARDAVDAYLVRARPVLAQAGTGTPALFLGMRGRPLSRQSAWAI 238 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 ++ R L + HTLRHS+ATHLL+ G D+R +Q +LGH ++TTQ+YT V ++ Sbjct: 239 LQSAARRADLEEHVSPHTLRHSYATHLLAGGADVRVVQELLGHASVTTTQLYTLVTAQT- 297 Query: 307 GDWMMEIYDQTHP 319 + E+Y HP Sbjct: 298 ---LREVYAAAHP 307 >gi|225874533|ref|YP_002755992.1| putative tyrosine recombinase XerC [Acidobacterium capsulatum ATCC 51196] gi|225793160|gb|ACO33250.1| putative tyrosine recombinase XerC [Acidobacterium capsulatum ATCC 51196] Length = 310 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 100/307 (32%), Positives = 152/307 (49%), Gaps = 18/307 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT-IRQLSYTEIRAFISK 77 + +L L ERG S TL++Y + R F A Y E + ++ + +T IRA++ + Sbjct: 13 EAYLAALRNERGSSPHTLRAYTRELRDF----AAYAERLLGKDVGVKAMEHTHIRAYLGE 68 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 + + S R+L+ I+S+ K+L + +S + K LPR + L Sbjct: 69 LYERGLSKASAARALAAIRSWCKWLARHGELEQSPAALVATPKLPKHLPRVPTIEDMNRL 128 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 VD +S E AR+ IL LLYGCG+R +E + + ++I + ++GKG K Sbjct: 129 VDA----SSEEVAAWPARDRLILELLYGCGIRNAELVGINLEDIQWTNEAILVRGKGRKE 184 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKP-LNPGVFQRYIRQLRR 252 R VP+ + +A+ Y L + L L +RG+ L R ++Q+ Sbjct: 185 RYVPIGDAAAQALRAYLPERNQKLATAGKDSAALLLNARLRGQGRLTTRSVGRIVKQMAL 244 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 GLP HTLRH+F THLL G DLR+IQ +LGH RLSTTQ YT + + Sbjct: 245 AQGLPADVHPHTLRHAFGTHLLEEGADLRAIQELLGHERLSTTQRYTQLTVGQ----VEA 300 Query: 313 IYDQTHP 319 +YD+THP Sbjct: 301 VYDRTHP 307 >gi|297242743|ref|ZP_06926681.1| site-specific recombinase XerD [Gardnerella vaginalis AMD] gi|296888954|gb|EFH27688.1| site-specific recombinase XerD [Gardnerella vaginalis AMD] Length = 322 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 84/291 (28%), Positives = 148/291 (50%), Gaps = 15/291 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +++ + +GL + T ++Y D Q L + + I +L+ ++R++++ Sbjct: 24 DYIDYVRANKGLGERTQKAYASDILQCLAWC-----NRHGFNNISELTTDDLRSWMADE- 77 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 ++ SL R + ++ F + + + + + + K N LP L+E QA +L++ Sbjct: 78 SRSHARSSLARKVVAVRGFFAWCQHVEYISSNPAEILMTPKIKNMLPSVLDEYQAESLMN 137 Query: 140 NV------LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 NV + K + RN+AIL LLY G+R+ E SL Q+I T+++ GK Sbjct: 138 NVDSKANVSSSCTKNQKAVGLRNAAILELLYATGIRVGELTSLNIQDINFSSHTIKVTGK 197 Query: 194 GDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 G+K R+VP KA+ + D L +++ F G RGK ++ + +R + Sbjct: 198 GNKQRVVPFGVPAYKALSAWISKDGREILLRNSVEEAAFLGTRGKRIDQRLVRRIVHDEA 257 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + +P + H LRHS ATH+L+ G DLR +Q +LGH L+TTQ YT+V+ Sbjct: 258 KSAHVP-DISPHALRHSAATHMLNGGADLREVQELLGHSSLNTTQRYTHVS 307 >gi|154488853|ref|ZP_02029702.1| hypothetical protein BIFADO_02161 [Bifidobacterium adolescentis L2-32] gi|154082990|gb|EDN82035.1| hypothetical protein BIFADO_02161 [Bifidobacterium adolescentis L2-32] Length = 308 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 83/291 (28%), Positives = 148/291 (50%), Gaps = 24/291 (8%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L+ RGLS T ++Y D + L+ L K + +++ ++R +++K ++ Sbjct: 14 LKANRGLSANTRRAYRSDVEECLVAL-----RKQGCVDLNEVTIEDLRLWMAKS-SKNHA 67 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--- 141 S+ R ++ F + + + + +++ K ++LP LNE QA L+D V Sbjct: 68 RSSMARKTVAVRGFFAWAYDHDMASANPAASLQTPKIPDTLPAVLNETQAQQLMDRVDED 127 Query: 142 -LLHTSHET----KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 + S E + I R++A+L LLY G+R++E + L ++ T+++ GKGDK Sbjct: 128 GMEARSQEPNMKKQAIALRDAAMLELLYATGMRVAELVGLDVADVTFGNRTVKVTGKGDK 187 Query: 197 IRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 R++P KA+ ++ + LC D++ + F G +G + + ++ + Sbjct: 188 QRVMPFGAPADKALRDWLEHGRPVLCG-DMSDDA---FFLGSQGGRIGQRMVRKVVHDRA 243 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 R G+P + H LRHS ATH+L G DLR +Q +LGH L TTQ YT+V+ Sbjct: 244 RKAGVP-DISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVS 293 >gi|170769828|ref|ZP_02904281.1| tyrosine recombinase XerC [Escherichia albertii TW07627] gi|170121266|gb|EDS90197.1| tyrosine recombinase XerC [Escherichia albertii TW07627] Length = 298 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 91/307 (29%), Positives = 154/307 (50%), Gaps = 17/307 (5%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L + + +L+ L +ER LS +TL +Y+ RQ + F +E +Q+ +Q +R Sbjct: 3 DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIINFASEN--GLQSWQQCDAAMVR 57 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F + R + +G SL LS ++SF +L + + + K LP+ ++ Sbjct: 58 NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 L+D + + R+ A+L ++YG GLR+SE + L +++ + + + G Sbjct: 118 DINRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 KG K R +P+ + I ++DL DL + LF GK ++ Q+ + Sbjct: 172 KGSKERRLPIGRNAVAWIEHWFDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 GL H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ + Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285 Query: 313 IYDQTHP 319 +YD HP Sbjct: 286 VYDAAHP 292 >gi|157364345|ref|YP_001471112.1| phage integrase family protein [Thermotoga lettingae TMO] gi|259710440|sp|A8F7B4|XERC_THELT RecName: Full=Tyrosine recombinase xerC gi|157314949|gb|ABV34048.1| phage integrase family protein [Thermotoga lettingae TMO] Length = 286 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 94/296 (31%), Positives = 145/296 (48%), Gaps = 26/296 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 QN+ L R LS T+ +Y D +QFL FL E I ++ + +L E +SK+ Sbjct: 6 QNFSDYLMHVRRLSDHTVVAYVGDVKQFLCFL---IENDIELKDVSRLHIEEYIKKLSKQ 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 +T K+ SL R +S ++SF YL+ I E+ + +RN K +P L + L+ Sbjct: 63 KT-KLNSTSLARKISSLRSFFNYLQLTSIKDENPVEGIRNPKIRRRIPDFLLPSEIQKLL 121 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKI 197 E + R+ +L LLY CGLR+SE +L +++ + ++I GKG K Sbjct: 122 ---------EFSMKNQRDYLMLSLLYFCGLRVSELCNLRVEDLSFSPAFVKITMGKGKKD 172 Query: 198 RIVPLLPSVRKAILEYYDLC---PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 RIVPL + + + Y C P D Q+ + +P R +R+ Sbjct: 173 RIVPLTSKLAEKLENYITSCGKSPEDYLFGSQIKI---------HPSTVFRIVRKYTMMC 223 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ HTLRH+FATHLL G ++R +Q +LGH LSTT +Y +V + D + Sbjct: 224 GIKKRIHPHTLRHTFATHLLQKGVNIRVVQDLLGHSNLSTTSVYLHVVDQEKFDAI 279 >gi|254472325|ref|ZP_05085725.1| tyrosine recombinase XerD [Pseudovibrio sp. JE062] gi|211958608|gb|EEA93808.1| tyrosine recombinase XerD [Pseudovibrio sp. JE062] Length = 295 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 89/285 (31%), Positives = 139/285 (48%), Gaps = 15/285 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +ER + TL+SY D F FL + + +Q T++RA++S + Sbjct: 2 LSVERVSAFNTLESYRTDLEDFDSFLTTQGVDLLAVQV------TDVRAYLSDLTDRGFA 55 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--- 141 S R LS ++ F ++ I + + + +K+ +LP L+E++ L+ Sbjct: 56 ASSQARRLSALRQFYQFCYAEDIRDDDPTRTVASPRKAATLPSVLSEEEVDRLIGKAEEL 115 Query: 142 --LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + H S + AR +L +LY GLR+SE +SL + D + ++GKG K R Sbjct: 116 ANITHDSDAKQIRAARIYTLLEVLYATGLRVSELVSLPVSAAIRDSRLITVKGKGGKERA 175 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLF--RGIRGKPLNPGVFQRYIRQLRRYLGLP 257 VPL P + A++EY L + LF G G F R ++ L + Sbjct: 176 VPLSPRAQSAMVEYVRLRAAVGAYADSVWLFPSHGESGH-FTRQAFGRDLKALALEADID 234 Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + + H LRH+FA+HLL NG DLR +Q +LGH +STTQIYT+V Sbjct: 235 RNKVSPHVLRHAFASHLLQNGADLRVVQQLLGHADISTTQIYTHV 279 >gi|157159369|ref|YP_001465295.1| site-specific tyrosine recombinase XerC [Escherichia coli E24377A] gi|218556374|ref|YP_002389288.1| site-specific tyrosine recombinase XerC [Escherichia coli IAI1] gi|300923315|ref|ZP_07139363.1| tyrosine recombinase XerC [Escherichia coli MS 182-1] gi|301328427|ref|ZP_07221508.1| tyrosine recombinase XerC [Escherichia coli MS 78-1] gi|166918883|sp|A7ZU16|XERC_ECO24 RecName: Full=Tyrosine recombinase xerC gi|254799337|sp|B7M613|XERC_ECO8A RecName: Full=Tyrosine recombinase xerC gi|157081399|gb|ABV21107.1| tyrosine recombinase XerC [Escherichia coli E24377A] gi|218363143|emb|CAR00784.1| site-specific tyrosine recombinase [Escherichia coli IAI1] gi|300420401|gb|EFK03712.1| tyrosine recombinase XerC [Escherichia coli MS 182-1] gi|300845137|gb|EFK72897.1| tyrosine recombinase XerC [Escherichia coli MS 78-1] Length = 298 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 92/307 (29%), Positives = 154/307 (50%), Gaps = 17/307 (5%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L + + +L+ L +ER LS +TL +Y+ RQ + F +E +Q+ +Q T +R Sbjct: 3 DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIINFASEN--GLQSWQQCDVTVVR 57 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F + R + +G SL LS ++SF +L + + + K LP+ ++ Sbjct: 58 NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 L+D + + R+ A+L ++YG GLR+SE + L +++ + + + G Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 KG K R +P+ + I + DL DL + LF GK ++ Q+ + Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 GL H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ + Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285 Query: 313 IYDQTHP 319 +YD HP Sbjct: 286 VYDAAHP 292 >gi|227823255|ref|YP_002827227.1| site-specific tyrosine recombinase XerD [Sinorhizobium fredii NGR234] gi|227342256|gb|ACP26474.1| tyrosine recombinase XerD [Sinorhizobium fredii NGR234] Length = 313 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 94/315 (29%), Positives = 155/315 (49%), Gaps = 16/315 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ + ERG + TLQSYE D R L FL + + + + +++ ++S Sbjct: 10 EAFLEMMSAERGAAINTLQSYERDLRDALAFL------RSSGARLNSATADDLKRYLSHL 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S R LS ++ F K+L + + + KK+ +LP+ L+ L+ Sbjct: 64 AGEGFKSSSQARRLSALRQFYKFLYAEGLRGDDPTGILDAPKKARALPKTLSIDDVTRLI 123 Query: 139 DNVLLHTSHETKWIDAR--NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 + + AR A++ LLY G+R+SE +SL + + L I+GKG+K Sbjct: 124 GQAEAEAAAGGEDAFARLRMHALIELLYATGMRVSELVSLPASVLAQNGRFLVIRGKGNK 183 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP--LNPGVFQRYIRQLRRYL 254 R+VPL + +A+ Y D + P GK L VF R ++ L Sbjct: 184 ERLVPLSQAAIRAMRTYGDALR-RRAAEAESPWLFPSSGKSGHLPRQVFARDLKSLAARA 242 Query: 255 GLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ ++ + H LRH+FA+HLL+NG DLR++Q +LGH +STTQIYT+V + + E+ Sbjct: 243 GIRVAVISPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEER----LHEL 298 Query: 314 YDQTHPSITQKDKKN 328 HP Q K++ Sbjct: 299 VQNHHPLAKQAKKQD 313 >gi|330812552|ref|YP_004357014.1| Site-specific tyrosine recombinase XerC/Sss [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|34222931|sp|Q8VS06|XERC_PSEFL RecName: Full=Tyrosine recombinase xerC gi|1929097|emb|CAA72946.1| Sss/XerC protein [Pseudomonas fluorescens] gi|27652537|gb|AAO17715.1| site-specific recombinase [Pseudomonas fluorescens] gi|327380660|gb|AEA72010.1| Site-specific tyrosine recombinase XerC/Sss [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 299 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 92/306 (30%), Positives = 149/306 (48%), Gaps = 21/306 (6%) Query: 17 ERQ--NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 ERQ + ++L ER +S TL +Y D + L + +K I + L +R+ Sbjct: 2 ERQLDAYCEHLRSERQVSPHTLSAYRRDLEKVLGWC-----QKQNIGSWAALDIQRLRSL 56 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 I++ Q RSL R LS ++ YL + + + K LP+ L+ +A Sbjct: 57 IARLHQQGQSSRSLARLLSAVRGLYHYLNREGLCDHDPATGLAPPKGERRLPKTLDTDRA 116 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 L L++ + E ++ R+ AIL L Y GLR+SE L + +++ GKG Sbjct: 117 LQLLEGAV-----EDDFLARRDQAILELFYSSGLRLSELTGLNLDQLDLADGMVQVLGKG 171 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-RRY 253 K R++P+ R+A+ ++ L L +F +G+ L P Q ++ R Sbjct: 172 SKTRLLPVGRKAREALEQWLPLRA--LTNPADDAVFVSQQGRRLGPRAIQLRVKAAGERE 229 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 LG L H LRHSFA+HLL + DLR++Q +LGH + TTQIYT+++ ++ + + Sbjct: 230 LGQNLHP--HMLRHSFASHLLESSQDLRAVQELLGHSDIKTTQIYTHLDFQH----LATV 283 Query: 314 YDQTHP 319 YD HP Sbjct: 284 YDSAHP 289 >gi|27363993|ref|NP_759521.1| site-specific tyrosine recombinase XerD [Vibrio vulnificus CMCP6] gi|161486657|ref|NP_933458.2| site-specific tyrosine recombinase XerD [Vibrio vulnificus YJ016] gi|320157372|ref|YP_004189751.1| tyrosine recombinase XerD [Vibrio vulnificus MO6-24/O] gi|34222790|sp|Q7ZAJ0|XERD_VIBVU RecName: Full=Tyrosine recombinase xerD gi|71153415|sp|Q7MNQ0|XERD_VIBVY RecName: Full=Tyrosine recombinase xerD gi|27360110|gb|AAO09048.1| tyrosine recombinase XerD [Vibrio vulnificus CMCP6] gi|319932684|gb|ADV87548.1| tyrosine recombinase XerD [Vibrio vulnificus MO6-24/O] Length = 305 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 94/305 (30%), Positives = 151/305 (49%), Gaps = 21/305 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA--FYTEEKITIQTIRQLSYTEIRAFIS 76 + +L + +ERGL++ TL SY D + L ++ Y + I++ ++Q + S Sbjct: 16 EQFLDAMWMERGLAENTLASYRNDLMKLLQWMEANHYRLDFISLSGLQQ--------YQS 67 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 Q S R LS I+ +YL + K+ + + + K LP+ ++E+Q Sbjct: 68 YLVDQDYKQTSRARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQV-- 125 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 + LL ++ R+ A+L LLY GLR++E +SLT +NI Q +R+ GKG K Sbjct: 126 ---DALLDAPDPNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGK 182 Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 R+VP+ + I + P L +F R + + F I+ G Sbjct: 183 ERLVPMGENAIDWIETFIKQGRPALLGETSSDVVFPSKRARQMTRQTFWHRIKFYAVIAG 242 Query: 256 LPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 + + H LRH+FATHLL+ G DLR +Q +LGH LSTTQIYT+V ++ + +I+ Sbjct: 243 IDTDHLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIH 298 Query: 315 DQTHP 319 Q HP Sbjct: 299 SQHHP 303 >gi|116748125|ref|YP_844812.1| tyrosine recombinase XerD [Syntrophobacter fumaroxidans MPOB] gi|116697189|gb|ABK16377.1| tyrosine recombinase XerD subunit [Syntrophobacter fumaroxidans MPOB] Length = 294 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 95/300 (31%), Positives = 152/300 (50%), Gaps = 16/300 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L ++ +E+GLS T+ Y D ++ L + K + + +S +I +++ + Sbjct: 8 FLNHITVEKGLSPNTVAGYGGDLQEMLGYFG-----KHGVSSWEAVSREDIVSYLESV-S 61 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 ++ RS R L+ +++F KYL++ + S +R K + LP+ L ++ VD Sbjct: 62 GRLSHRSKARRLAALRAFFKYLERTGKMSGSPAALVRFPKFNPGLPKTLTGRE----VDA 117 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 +L + T + R+ A+L LLY GLR+SE L + + L +GKGDK R V Sbjct: 118 LLAAPAAGTP-LGQRDRAMLELLYATGLRVSELADLQLDQVHLEAGYLVARGKGDKERPV 176 Query: 201 PLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ +A+ Y D L +F R L + I+Q G+ + Sbjct: 177 PMGEPAGEALQIYLRDGRRRLLKDGRSREVFLNRRAVKLTRQGIWKIIKQYALKSGIRQN 236 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T H LRHSFATHLL NG DLRS+Q++LGH +STTQIYT+V K + E++ + HP Sbjct: 237 LTPHVLRHSFATHLLENGADLRSLQAMLGHADISTTQIYTHVAKKR----LKEVHLKFHP 292 >gi|323974393|gb|EGB69521.1| tyrosine recombinase XerC [Escherichia coli TW10509] Length = 298 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 92/307 (29%), Positives = 154/307 (50%), Gaps = 17/307 (5%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L + + +L+ L +ER LS +TL +Y+ RQ + F +E +Q+ +Q T +R Sbjct: 3 DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIINFASEN--GLQSWQQCDVTMVR 57 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F + R + +G SL LS ++SF +L + + + K LP+ ++ Sbjct: 58 NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 L+D + + R+ A+L ++YG GLR+SE + L +++ + + + G Sbjct: 118 DINRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 KG K R +P+ + I + DL DL + LF GK ++ Q+ + Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 GL H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ + Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285 Query: 313 IYDQTHP 319 +YD HP Sbjct: 286 VYDAAHP 292 >gi|315186395|gb|EFU20155.1| integrase family protein [Spirochaeta thermophila DSM 6578] Length = 312 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 94/328 (28%), Positives = 158/328 (48%), Gaps = 22/328 (6%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 MEG ++ + L+ +L +L RGLS+ T++SY D + FL EK+ Sbjct: 3 MEGGSVSTLHQETLI---DRFLAHLSHMRGLSEATVRSYRNDLVKVGAFL-----EKLGT 54 Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 + + +IR +++ + S+ R LS ++S+ ++L++ + +S + + ++K Sbjct: 55 DLV-SATREDIRHCVAEYTLARQAPSSINRMLSSLRSWYRFLRREGVRIDSPMEGISSVK 113 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 LP L E + L+D + + R+ A+L +LY G R+ E +SLT Sbjct: 114 AGKRLPSFLFEDEVDRLLDI------EGSDFASLRDRALLEVLYSTGCRVQELVSLTISG 167 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF---DLNLNIQLPLFRGIRGKP 237 + + ++GKG K R++ L RKA+ Y L + + LF +G P Sbjct: 168 VQVSRGWCVVKGKGGKERLLFLGLGARKALAAYLPLRQALLERMGRREEGALFVNQKGSP 227 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L I + R GL + H RHSFATH+LS G DLR +Q +LGH LSTTQ+ Sbjct: 228 LTTRGVAYIIERRAREKGLEKRISPHVFRHSFATHVLSRGADLRVVQEMLGHASLSTTQV 287 Query: 298 YTNVNSKNGGDWMMEIYDQTHPSITQKD 325 YT+++ + +Y + HP + D Sbjct: 288 YTHLSLPA----LKRMYRKAHPHAERSD 311 >gi|327404137|ref|YP_004344975.1| Tyrosine recombinase xerC [Fluviicola taffensis DSM 16823] gi|327319645|gb|AEA44137.1| Tyrosine recombinase xerC [Fluviicola taffensis DSM 16823] Length = 293 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 87/305 (28%), Positives = 159/305 (52%), Gaps = 23/305 (7%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 + +++ LE+E+ SK T+ +YE D QF+ F +E K +++ R+++Y +RA++ Sbjct: 4 KDSFIHYLEVEKRYSKHTILAYEEDLNQFVSF----SELKESVEW-REVNYQLVRAWVVG 58 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 +R++ R +S ++SF K+L E+ +L +R K LP+ + + T Sbjct: 59 LLESGQSNRTVSRKISCLRSFFKWLINEGKIGENPMLRIRGPKVEKRLPQFVKQ----TE 114 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 +D + + + R+ + L Y G+R+SE + L +++ ++++ GK +K Sbjct: 115 IDGARIEGLFSSNFEGVRDRLMFELFYQTGIRLSELIELKNKDV--SSVSIKVLGKRNKE 172 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 RI+P+ + + IL Y + P + Q+ LF G+ L+P R++ YLG Sbjct: 173 RIIPIGQELHEIILAYQSIKPG--GPDSQILLFVKKDGRKLSPKFV---YRKINTYLGSV 227 Query: 258 LST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 + + H LRH+FATH+L+NG L +++ +LGH LS TQ+YT+ N + IY Sbjct: 228 TNVQKKSPHILRHTFATHMLNNGAGLETLKELLGHANLSATQVYTH----NSFAQINSIY 283 Query: 315 DQTHP 319 HP Sbjct: 284 SHAHP 288 >gi|307262299|ref|ZP_07543948.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868062|gb|EFM99889.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 336 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 90/305 (29%), Positives = 159/305 (52%), Gaps = 19/305 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L IE+ S+ TL +Y+ RQ L ++ I+ T ++++ +R I++ Q +G Sbjct: 49 LRIEKQASQHTLSNYQ---RQLLAVSDMLSQAGIS--TWQEVNSATVRWIIAQSNKQGLG 103 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 +S+ L ++ + YL +++ + + + ++ K S LP+ ++ +Q + +L Sbjct: 104 AKSIALRLVALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQ----IGQLLTS 159 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 SHE D R+ A++ L+Y GLR+SE L ++ +R+ GKG+K RIVP+ Sbjct: 160 DSHEPS--DLRDLAMMELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGS 217 Query: 205 SVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 +A+ + + F N +F RG L+ Q +++ GL H Sbjct: 218 KALEALNRWLAVRNQFKPQDN---AVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPH 274 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323 LRHSFATH+L GDLR++Q +LGH L+TTQIYT+++ ++ + +IYD HP + Sbjct: 275 KLRHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQH----LAKIYDAAHPRAKR 330 Query: 324 KDKKN 328 K + + Sbjct: 331 KKQDD 335 >gi|220912958|ref|YP_002488267.1| integrase [Arthrobacter chlorophenolicus A6] gi|219859836|gb|ACL40178.1| integrase family protein [Arthrobacter chlorophenolicus A6] Length = 295 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 91/302 (30%), Positives = 144/302 (47%), Gaps = 11/302 (3%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + L ER LS T ++Y D L F A +E ++ L +R ++ + Sbjct: 2 EGFAAYLSGERALSPHTRRAYLGDLESLLAFAA--SEGAAELE---DLELGTLRRWLGAQ 56 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 +L R + I++F + + + L ++ K+ SLP L Q L+ Sbjct: 57 SQSGAARATLARRSATIRAFTAWALREEYLEADPALRLKAPKREQSLPGVLQAPQLERLL 116 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L + + + RN AI+ LLY G+R+ E +L N+ D+ TLR+ GKG+K R Sbjct: 117 KE-LEDGAADGDPMAVRNRAIVELLYATGIRVGELAALDVDNLDPDRRTLRVIGKGNKER 175 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 VP A+ ++ + + P LF G+RG ++ + + L +G Sbjct: 176 TVPYGVPAALAVDDWLRRGRPLMAKDTSGPALFLGLRGGRVDQRQVRSVVHGLFEAMGDT 235 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 ++ H LRHS ATHLL G DLR++Q ILGH L+TTQIYT+V+ D + + Y Q Sbjct: 236 SASGPHALRHSAATHLLDGGADLRAVQEILGHSSLATTQIYTHVSV----DRLRKSYQQA 291 Query: 318 HP 319 HP Sbjct: 292 HP 293 >gi|183602476|ref|ZP_02963842.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis subsp. lactis HN019] gi|241191170|ref|YP_002968564.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196576|ref|YP_002970131.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218395|gb|EDT89040.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis subsp. lactis HN019] gi|240249562|gb|ACS46502.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251130|gb|ACS48069.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289177279|gb|ADC84525.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium animalis subsp. lactis BB-12] gi|295794163|gb|ADG33698.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis subsp. lactis V9] Length = 311 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 89/305 (29%), Positives = 143/305 (46%), Gaps = 27/305 (8%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY---TEEKITIQTIRQLSYT 69 ++L ER +++ L RGLS+ T +Y D Q L L + + +T+ +R Sbjct: 4 QVLMER--FIEYLRSNRGLSEHTCMAYRGDILQCLEALDAFGRGNPDDVTLDDLR----- 56 Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 R +G SL R ++SF + + + + +R K +LP L Sbjct: 57 ----MWMGRMAHTVGKTSLARKTIAVRSFFTWAYEHGMLAHNPAHALRTPKIDRNLPAVL 112 Query: 130 NEKQALTLVDNVLLHTSHETKW---IDA--------RNSAILYLLYGCGLRISEALSLTP 178 NE QA L+D V + DA R+ A+L LLY G+R+ E + L Sbjct: 113 NEDQAERLMDTVDAEAGEKNAGKSKDDALNAHAKALRDCAMLELLYATGMRVGELVGLDM 172 Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKP 237 + T+R+ GKG+K R++P ++A+ + + P N N +F G+RG Sbjct: 173 GSFDWSNRTVRVLGKGNKTRVIPFGAPAQQAVEHWLHGGRPVFANGNSGNAVFIGVRGCR 232 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 ++ V ++ + + G+P + H LRHS ATH+L G DLR +Q +LGH L TTQ Sbjct: 233 IDQRVVRQVVHEQAEQAGVP-DISPHALRHSAATHMLDGGADLREVQEMLGHSSLQTTQR 291 Query: 298 YTNVN 302 Y +V+ Sbjct: 292 YAHVS 296 >gi|126209269|ref|YP_001054494.1| site-specific tyrosine recombinase XerC [Actinobacillus pleuropneumoniae L20] gi|307248877|ref|ZP_07530889.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307253490|ref|ZP_07535361.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|126098061|gb|ABN74889.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|306854614|gb|EFM86805.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306859169|gb|EFM91211.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 336 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 90/305 (29%), Positives = 159/305 (52%), Gaps = 19/305 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L IE+ S+ TL +Y+ RQ L ++ I+ T ++++ +R I++ Q +G Sbjct: 49 LRIEKQASQHTLSNYQ---RQLLAVSDMLSQAGIS--TWQEVNSATVRWIIAQSNKQGLG 103 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 +S+ L ++ + YL +++ + + + ++ K S LP+ ++ +Q + +L Sbjct: 104 AKSIALRLVALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQ----IGQLLTS 159 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 SHE D R+ A++ L+Y GLR+SE L ++ +R+ GKG+K RIVP+ Sbjct: 160 DSHEPS--DLRDLAMMELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGS 217 Query: 205 SVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 +A+ + + F N +F RG L+ Q +++ GL H Sbjct: 218 KALEALNRWLAVRNQFKPQDN---AVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPH 274 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323 LRHSFATH+L GDLR++Q +LGH L+TTQIYT+++ ++ + +IYD HP + Sbjct: 275 KLRHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQH----LAKIYDAAHPRAKR 330 Query: 324 KDKKN 328 K + + Sbjct: 331 KKQDD 335 >gi|307264510|ref|ZP_07546095.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306870207|gb|EFN01966.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 336 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 90/305 (29%), Positives = 159/305 (52%), Gaps = 19/305 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L IE+ S+ TL +Y+ RQ L ++ I+ T ++++ +R I++ Q +G Sbjct: 49 LRIEKQASQHTLSNYQ---RQLLAVSDMLSQAGIS--TWQEVNSATVRWIIAQSNKQGLG 103 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 +S+ L ++ + YL +++ + + + ++ K S LP+ ++ +Q + +L Sbjct: 104 AKSIALRLVALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQ----IGQLLTS 159 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 SHE D R+ A++ L+Y GLR+SE L ++ +R+ GKG+K RIVP+ Sbjct: 160 DSHEPS--DLRDLAMMELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGS 217 Query: 205 SVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 +A+ + + F N +F RG L+ Q +++ GL H Sbjct: 218 KALEALNRWLAVRNQFKPQDN---AVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPH 274 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323 LRHSFATH+L GDLR++Q +LGH L+TTQIYT+++ ++ + +IYD HP + Sbjct: 275 KLRHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQH----LAKIYDAAHPRAKR 330 Query: 324 KDKKN 328 K + + Sbjct: 331 KKQDD 335 >gi|262370170|ref|ZP_06063497.1| tyrosine recombinase XerD [Acinetobacter johnsonii SH046] gi|262315209|gb|EEY96249.1| tyrosine recombinase XerD [Acinetobacter johnsonii SH046] Length = 305 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 81/234 (34%), Positives = 128/234 (54%), Gaps = 9/234 (3%) Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 RS+ R LS ++SF K+L+++K+ +++ + + K +LP+ L+E+ L+ + T Sbjct: 79 RSIARCLSALRSFFKFLREQKLRSDNPVALHKTPKIGRALPKDLSEQDVDALIQAPDIET 138 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 + + R+ A+ +LY CGLR+SE L+L I Q LRI GKG+K R+VPL Sbjct: 139 A-----LGLRDRAMFEVLYACGLRVSELLNLRLDLINLKQGYLRITGKGNKERLVPLGQI 193 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + + +Y L + LF G ++ F I++ G+ + HTL Sbjct: 194 AVEWVEKYLIESRPQLYKSATDYLFLTQHGGIMSRQNFWYAIKRYALQAGIQAELSPHTL 253 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 RH+FATHLL++G DLR +Q +LGH LSTTQIYT+V M +++ HP Sbjct: 254 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR----MQQLHASHHP 303 >gi|254446539|ref|ZP_05060015.1| tyrosine recombinase XerD [Verrucomicrobiae bacterium DG1235] gi|198260847|gb|EDY85155.1| tyrosine recombinase XerD [Verrucomicrobiae bacterium DG1235] Length = 309 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 95/309 (30%), Positives = 151/309 (48%), Gaps = 18/309 (5%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 LL+ ++L L +E+GLS T+++Y+ D QFL + E+ + + ++L+ + + Sbjct: 5 LLEGVDDFLAYLTLEKGLSDNTIENYQSDLSQFLA----HVEKSSRVGSWKKLTASHVSD 60 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTE-SNILNMRNLKKSNSLPRALNE 131 +I + SL R LS ++S YL ++RKI + I+ L++ ++ E Sbjct: 61 WIYALSEGDYSNASLCRKLSSLRSLDAYLMRERKIDKSFTEIVVGPKLRRKAPFTLSIQE 120 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 + L L T R+ A+L L Y GLR+SE L Q I + L+I Sbjct: 121 VERL-------LSAPDLTTAQGLRDRAMLELFYSSGLRVSELSGLMLQQIDLELGALKIY 173 Query: 192 GKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 GKG K R+ P+ AI +Y + P + +F RG ++ +R+ Sbjct: 174 GKGSKERVCPMGRKAATAIGDYLRNGRPRFVKSKTGSAVFLSARGTAISRKTIWVLVRKY 233 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 + G+ H LRHSFATHLL+ G DLR IQ +LGH ++TTQIYT+V + D Sbjct: 234 TKAAGIDKPVKPHMLRHSFATHLLTGGADLRIIQELLGHADIATTQIYTSVEA----DRT 289 Query: 311 MEIYDQTHP 319 +D+ HP Sbjct: 290 RSAHDEFHP 298 >gi|269795295|ref|YP_003314750.1| tyrosine recombinase XerD [Sanguibacter keddieii DSM 10542] gi|269097480|gb|ACZ21916.1| tyrosine recombinase XerD [Sanguibacter keddieii DSM 10542] Length = 317 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 94/317 (29%), Positives = 155/317 (48%), Gaps = 25/317 (7%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 L + Q +L +L IERG S T+ +Y D +++ +L E + + + ++ T + Sbjct: 11 LRRAVQGYLDHLTIERGRSTNTVAAYRRDLDRYVAYL-----ESLDL-ALEDVTTTVVED 64 Query: 74 FISKRRTQKIGDRSLK-----RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 +++ RT G +L RSL+ ++ + + + + +R + LP+A Sbjct: 65 YVTVVRTGSDGRSALAAGSAARSLAAVRGWHTFCVAEGLAPANPTAGVRPPSQGKRLPKA 124 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQS 186 ++ V+ +L RN A+L LLY G RISEA++L ++ Sbjct: 125 ISTYD----VERLLAAAGAGDTVASVRNRALLELLYSTGARISEAVTLDVDDLDLTPGLE 180 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLP-LFRGIRGKPLNPGVFQ 244 ++R+ GKG K R+VP+ +AI Y P + P +F RG L+ Sbjct: 181 SVRLFGKGSKERVVPVGSFAVEAIQAYLVRARPVLMAAGRGTPAVFLNTRGARLSRQSAW 240 Query: 245 RYIRQLRRYLGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + +R GL + + HTLRHSFATHLLS G D+R +Q +LGH ++TTQ+YT V Sbjct: 241 QVLRTSAETAGLDGAEHISPHTLRHSFATHLLSGGADVRVVQELLGHASVTTTQLYTMVT 300 Query: 303 SKNGGDWMMEIYDQTHP 319 + D + E+Y Q+HP Sbjct: 301 A----DSLREVYVQSHP 313 >gi|257465111|ref|ZP_05629482.1| site-specific tyrosine recombinase XerC [Actinobacillus minor 202] gi|257450771|gb|EEV24814.1| site-specific tyrosine recombinase XerC [Actinobacillus minor 202] Length = 300 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 89/307 (28%), Positives = 156/307 (50%), Gaps = 19/307 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q + L E+ +S TL +Y+ RQ A + +I+ + +++ + IR +S+ Sbjct: 10 QPYWDYLRAEKQVSPHTLSNYQ---RQLQAVCAMLKQHQIS--SWQEVDASVIRWILSQS 64 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q +G +S+ L ++ + YL K + + L ++ K LP+ ++ +Q L+ Sbjct: 65 HKQGLGAKSIGVRLVALRQWFAYLVKHEQLPANPALGIKAPKVGRHLPKNVDAEQVAQLL 124 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + + T ++ R+ A++ L+Y GLR+SE L + +R+ GKG+K R Sbjct: 125 NTEV------TTPLEIRDLAMMELMYSSGLRLSELQGLDLDRMDLATREVRLLGKGNKER 178 Query: 199 IVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 IVP+ +AI + ++ F+ N +F RG L+ Q + + R GL Sbjct: 179 IVPIGSKALEAIHRWLEVRMSFNPQDN---AVFLNNRGGRLSHRSIQLIMEKWGRKQGLE 235 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 H LRHSFATH+L GDLR++Q +LGH L+TTQIYT+++ ++ + ++YD Sbjct: 236 THLHPHKLRHSFATHMLEGSGDLRAVQELLGHSSLATTQIYTHLDFQH----LAKVYDAA 291 Query: 318 HPSITQK 324 HP +K Sbjct: 292 HPRARKK 298 >gi|204930199|ref|ZP_03221176.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320603|gb|EDZ05805.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322613026|gb|EFY09977.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617386|gb|EFY14286.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625622|gb|EFY22444.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627045|gb|EFY23838.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631239|gb|EFY28002.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638272|gb|EFY34971.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642792|gb|EFY39379.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646966|gb|EFY43468.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650353|gb|EFY46766.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656356|gb|EFY52650.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657581|gb|EFY53851.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665992|gb|EFY62173.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666731|gb|EFY62908.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671026|gb|EFY67156.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322679267|gb|EFY75319.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681671|gb|EFY77698.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686002|gb|EFY81990.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192628|gb|EFZ77856.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196494|gb|EFZ81644.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203754|gb|EFZ88775.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205371|gb|EFZ90345.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210740|gb|EFZ95616.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215908|gb|EGA00641.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221401|gb|EGA05819.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227581|gb|EGA11737.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231766|gb|EGA15877.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236181|gb|EGA20258.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239582|gb|EGA23630.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244322|gb|EGA28330.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249581|gb|EGA33493.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250327|gb|EGA34213.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256534|gb|EGA40265.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259768|gb|EGA43401.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265176|gb|EGA48674.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268395|gb|EGA51867.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 300 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 91/298 (30%), Positives = 149/298 (50%), Gaps = 17/298 (5%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L+ L +ER LS +TLQ+Y+ RQ +A E +++ +Q +R+F + R + Sbjct: 14 LRYLGVERQLSPITLQNYQ---RQLDAIIALAGE--TGLKSWQQCDAAIVRSFAVRSRRK 68 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 +G SL LS ++SF +L + + + K LP+ ++ L+D Sbjct: 69 GLGSASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDID 128 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 L + R+ A+L ++YG GLR+SE + L +++ D + + GKG K R +P Sbjct: 129 L------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLP 182 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 + + I + DL L + + LF GK ++ Q+ + GL Sbjct: 183 IGRNAVTWIEHWLDLR--GLFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVH 240 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ + +YD HP Sbjct: 241 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHP 294 >gi|298694544|gb|ADI97766.1| Site-specific tyrosine recombinase [Staphylococcus aureus subsp. aureus ED133] Length = 298 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 97/322 (30%), Positives = 165/322 (51%), Gaps = 42/322 (13%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 ++ +L L++ER S+ TL+SY+ D QF FL +E + + T Y + R ++S Sbjct: 5 QEAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLE---QEHLQLNT---FEYRDARNYLSY 58 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSLPRALNEKQ 133 + + S+ R +S +++F +Y +T + NI+N + + KK LP+ E++ Sbjct: 59 LYSNHLKRTSVSRKISTLRTFYEYW----MTLDENIINPFVQLVHPKKEKYLPQFFYEEE 114 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L V TS R+ +L LLY G+R+SE +++ Q+I + + + GK Sbjct: 115 MEALFKTVEEDTSK-----SLRDRVVLELLYATGIRVSELVNIKKQDIDFYANGVTVLGK 169 Query: 194 GDKIRIVPLLPSVRKAILEYYDL------CPFDLNLNIQLPLFRGIRGKPLNP-GVFQRY 246 G K R VP R++I Y + C D L ++G+ + GV RY Sbjct: 170 GSKERFVPFGAYCRQSIENYLEHFKPIQSCNHDF-------LIVNMKGEAITERGV--RY 220 Query: 247 IRQ--LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + ++R G+ H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++ Sbjct: 221 VLNDIVKRTAGVS-EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQ 279 Query: 305 NGGDWMMEIYDQTHPSITQKDK 326 + ++Y HP ++++ Sbjct: 280 Q----LRKVYLNAHPRAKKENE 297 >gi|261211515|ref|ZP_05925803.1| site-specific recombinase XerD [Vibrio sp. RC341] gi|260839470|gb|EEX66096.1| site-specific recombinase XerD [Vibrio sp. RC341] Length = 302 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 93/304 (30%), Positives = 157/304 (51%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + +ERGL++ T+ SY D + L ++ + + +S++ ++ + S Sbjct: 13 EQFLDTMWLERGLAENTVASYRNDLSKLLEWMEQHHYR------LDFISFSGLQEYQSWL 66 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q S R LS I+ +YL + K+ + + + K LP+ L+E Q Sbjct: 67 SEQNYKPSSKARMLSAIRRLFQYLHREKVRADDPSALLISPKLPIRLPKDLSEAQV---- 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + LL+ I+ R+ A+L LLY GLR++E +SLT +N+ Q +R+ GKG K R Sbjct: 123 -DALLNAPDPQTPIELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVIGKGGKER 181 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VP+ + + I E + L L Q +F RG+ + F I+ G+ Sbjct: 182 LVPMGENAIEWI-ETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGI 240 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + H LRH+FATHLL+ G DLR +Q +LGH LSTTQIYT+V ++ + ++++ Sbjct: 241 DVEKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHN 296 Query: 316 QTHP 319 + HP Sbjct: 297 EHHP 300 >gi|289207303|ref|YP_003459369.1| tyrosine recombinase XerC [Thioalkalivibrio sp. K90mix] gi|288942934|gb|ADC70633.1| tyrosine recombinase XerC [Thioalkalivibrio sp. K90mix] Length = 316 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 95/323 (29%), Positives = 154/323 (47%), Gaps = 27/323 (8%) Query: 3 GNNLPEIVSFELLKERQN---WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59 G N P + E + +L +L RG S T+++Y+ D L L ++ Sbjct: 4 GPNPPPEAAAETTAHDADIAAFLAHLRDVRGHSPHTIKAYQRD----LAHL-----RRLH 54 Query: 60 IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119 QL ++R + Q RS++R LS + F + + + + +R Sbjct: 55 SGPWDQLKAADMRRIAGQLARQGHHPRSIQRFLSAARGFFAHQVEHRRMPANPAAGLRGP 114 Query: 120 KKSNSLPRALN---EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 + +LPR L+ +QALT +++ + AR+ A+L LLY GLR+SE L Sbjct: 115 RAGRALPRDLDVDQTQQALTPAEDL-------DPILAARDQAMLELLYSSGLRLSELTGL 167 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 ++ D +R+ GKG + R VP+ R A+ + C D +F RG+ Sbjct: 168 DLTDLDLDAGLVRVLGKGRRERSVPVGRMARDALRNWLK-CRGDWAAPDAHAVFVSRRGQ 226 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + QR + + R GL + H LRH+FA+HLL + GDLR+IQ +LGH L TTQ Sbjct: 227 RIGNRAVQRRVAEAGRRAGLDVRLHPHRLRHAFASHLLESSGDLRAIQELLGHANLETTQ 286 Query: 297 IYTNVNSKNGGDWMMEIYDQTHP 319 IYT+++ ++ + ++YD HP Sbjct: 287 IYTHLDYQH----LAQVYDAAHP 305 >gi|282916512|ref|ZP_06324270.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus D139] gi|283770316|ref|ZP_06343208.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus H19] gi|282318999|gb|EFB49351.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus D139] gi|283460463|gb|EFC07553.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus H19] Length = 298 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 98/322 (30%), Positives = 165/322 (51%), Gaps = 42/322 (13%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 ++ +L L++ER S+ TL+SY+ D QF FL +E + + T Y + R ++S Sbjct: 5 QEAFLNTLKVERNFSEHTLKSYKDDLIQFNQFLE---QEHLQLNT---FEYRDARNYLSY 58 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSLPRALNEKQ 133 + + S+ R +S +++F +Y +T + NI+N + + KK LP+ E++ Sbjct: 59 LYSNHLKRTSVSRKISTLRTFYEYW----MTLDENIINPFVQLVHPKKEKYLPQFFYEEE 114 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L V TS R+ IL LLY G+R+SE +++ Q+I + + + GK Sbjct: 115 MEALFKTVEEDTSK-----SLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGK 169 Query: 194 GDKIRIVPLLPSVRKAILEYYDL------CPFDLNLNIQLPLFRGIRGKPLNP-GVFQRY 246 G K R VP R++I Y + C D L ++G+ + GV RY Sbjct: 170 GSKERFVPFGAYCRQSIENYLEHFKPIQSCNHDF-------LIVNMKGEAITERGV--RY 220 Query: 247 IRQ--LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + ++R G+ H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++ Sbjct: 221 VLNDIVKRTAGVS-EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQ 279 Query: 305 NGGDWMMEIYDQTHPSITQKDK 326 + ++Y HP ++++ Sbjct: 280 Q----LRKVYLNAHPRAKKENE 297 >gi|124267211|ref|YP_001021215.1| tyrosine recombinase XerD subunit [Methylibium petroleiphilum PM1] gi|124259986|gb|ABM94980.1| tyrosine recombinase XerD subunit [Methylibium petroleiphilum PM1] Length = 309 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 87/302 (28%), Positives = 150/302 (49%), Gaps = 20/302 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ L +E GLS TL +Y D + +L + + + ++RA+ +R Sbjct: 23 FLEALWVEDGLSDNTLAAYRRDLTLYARWLVHASGKPLDGS-----GEADLRAYALERHA 77 Query: 81 QKIGDR--SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 G R S R L+ + + ++ + + L + K+ +P+ L+E Q L+ Sbjct: 78 ---GTRATSANRRLTVFRRYFRWALREHRLSADPTLKLLAAKQPLRVPKTLSEAQVEALL 134 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + + T + R+ A+L +LY GLR+SE ++L N+ ++ LR+ GKG K R Sbjct: 135 EAPDVDTP-----LGLRDRAMLEILYASGLRVSELVTLKSVNVGYSEAALRVTGKGSKER 189 Query: 199 IVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP ++ Y + L LF RG P+ F + I++ G+ Sbjct: 190 LVPFGEEAHGWLMRYLAEARAAILGGQASDALFVTARGGPMTRQAFWQLIKRHAGAAGIQ 249 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + + HTLRH+FATHLL++G DLR++Q +LGH +STT IYT+V + + +++ Q Sbjct: 250 VPLSPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVARER----LKQLHSQH 305 Query: 318 HP 319 HP Sbjct: 306 HP 307 >gi|258539622|ref|YP_003174121.1| tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705] gi|257151298|emb|CAR90270.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705] Length = 299 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 90/308 (29%), Positives = 150/308 (48%), Gaps = 20/308 (6%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 ++K + + L +ER S T+ +Y D ++F FL + ++ +++ Sbjct: 1 MMKPLAAFQEYLTVERQYSPETVTAYLNDIQEFQAFL----KANGGFTDFSKVDDLDVQT 56 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEK 132 +++ Q + S+ R +S ++SF +YL + + + N + LKK + LP+ E Sbjct: 57 YLTDLNKQALARTSIARKISSLRSFYRYLVRIDVV-KRNPFELVELKKQHHHLPQFFYEA 115 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + L V T +D RN A+L +LYG G+R+SE +LT + + L I G Sbjct: 116 EIQELFKTVEGETP-----LDQRNRALLEVLYGTGIRVSECANLTLNQVDFNTGLLLIHG 170 Query: 193 KGDKIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 KG+K R VP ++A+ Y + D +F G+P+ + Sbjct: 171 KGNKDRYVPFGRYAQRALQTYLKDGRQTLMNKHDAQHRF---VFVNQYGRPITARGIEYI 227 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 + QL + L + H LRHSFATH+L +G DLR++Q +LGH LSTTQIYT+V + Sbjct: 228 LDQLIKQTSLTANIHPHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHL 287 Query: 307 GDWMMEIY 314 + M+ Y Sbjct: 288 KNEYMKYY 295 >gi|108798958|ref|YP_639155.1| site-specific tyrosine recombinase XerC [Mycobacterium sp. MCS] gi|119868073|ref|YP_938025.1| site-specific tyrosine recombinase XerC [Mycobacterium sp. KMS] gi|123070325|sp|Q1BAI5|XERC_MYCSS RecName: Full=Tyrosine recombinase xerC gi|166918890|sp|A1UEH7|XERC_MYCSK RecName: Full=Tyrosine recombinase xerC gi|108769377|gb|ABG08099.1| tyrosine recombinase XerC subunit [Mycobacterium sp. MCS] gi|119694162|gb|ABL91235.1| tyrosine recombinase XerC subunit [Mycobacterium sp. KMS] Length = 300 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 86/298 (28%), Positives = 136/298 (45%), Gaps = 10/298 (3%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 Q L +ERG S T ++Y D R F E+ + L+ +RA++S + Sbjct: 10 QYLALERGRSDHTRRAYLGDLRSLFAF----CNERTPGADLGSLTLPVLRAWLSAQAAAG 65 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 +L R S +K+F + +R + ++ K +LP L + QA +D Sbjct: 66 TARTTLARRTSAVKTFTAWAVRRGLMASDPATRLQMPKARRTLPAVLRQDQARDALDAAN 125 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202 + + + R+ I+ +LY G+R+SE L ++ + LR+ GKGDK R VP Sbjct: 126 -SGAQQGDPLALRDRLIVEMLYATGIRVSELCGLDIDDVDTSRRLLRVLGKGDKQRTVPF 184 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 +A+ + L P L G RG+ L+P + + + + Sbjct: 185 GEPAEQALRAWLTSGRPALATAESGPALLLGARGRRLDPRQARTVVHETVGAVAGAPDIG 244 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHS ATHLL G DLR +Q +LGH L+TTQ+YT+V + ++DQ HP Sbjct: 245 PHGLRHSAATHLLEGGADLRIVQELLGHSTLATTQLYTHVTVAR----LRAVHDQAHP 298 >gi|309796245|ref|ZP_07690655.1| tyrosine recombinase XerC [Escherichia coli MS 145-7] gi|308120127|gb|EFO57389.1| tyrosine recombinase XerC [Escherichia coli MS 145-7] Length = 298 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 92/307 (29%), Positives = 153/307 (49%), Gaps = 17/307 (5%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L + + +L+ L +ER LS +TL +Y+ RQ + F +E +Q+ +Q T +R Sbjct: 3 DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIINFASEN--GLQSWQQCDVTMVR 57 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F + R + +G SL LS ++SF +L + + + K LP+ ++ Sbjct: 58 NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 L+D + + R+ A+L ++YG GLR+SE + L ++ + + + G Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDINHLDLESGEVWVMG 171 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 KG K R +P+ + I + DL DL + LF GK ++ Q+ + Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 GL H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ + Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285 Query: 313 IYDQTHP 319 +YD HP Sbjct: 286 VYDAAHP 292 >gi|283782972|ref|YP_003373726.1| site-specific tyrosine recombinase XerC [Gardnerella vaginalis 409-05] gi|283441162|gb|ADB13628.1| site-specific tyrosine recombinase XerC [Gardnerella vaginalis 409-05] Length = 322 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 84/291 (28%), Positives = 150/291 (51%), Gaps = 15/291 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +++ + +GL + T ++Y D Q L + + I +L+ ++R++++ Sbjct: 24 DYIDYVRANKGLGERTQKAYASDILQCLAWC-----NRHGFNNISELTTDDLRSWMADE- 77 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 ++ SL R + ++ F + + + + + + K N LP L+E QA +L++ Sbjct: 78 SRSHARSSLARKVVAVRGFFAWCQHVEYISGNPAEILMTSKIKNMLPSVLDEYQAESLMN 137 Query: 140 NVLLHTSHET------KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 NV + T K + RN+AIL LLY G+R+ E SL Q+I T+++ GK Sbjct: 138 NVDSKANVSTSCPKNQKAVGLRNAAILELLYATGIRVGELTSLNIQDINFSSHTIKVTGK 197 Query: 194 GDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 G+K R+VP KA+ + D L +++ +F G RGK ++ + ++ + Sbjct: 198 GNKQRVVPFGVPAYKALSAWISKDGREILLRNSVEEAVFLGTRGKRIDQRLVRQIVHDEA 257 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + +P + H LRHS ATH+L+ G DLR +Q +LGH L+TTQ YT+V+ Sbjct: 258 KSAHVP-DISPHALRHSAATHMLNGGADLREVQELLGHSSLNTTQRYTHVS 307 >gi|262373947|ref|ZP_06067224.1| tyrosine recombinase XerD [Acinetobacter junii SH205] gi|262310958|gb|EEY92045.1| tyrosine recombinase XerD [Acinetobacter junii SH205] Length = 306 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 80/234 (34%), Positives = 129/234 (55%), Gaps = 9/234 (3%) Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 RS+ R LS ++ F K+L+++K+ ++ + ++ K +LP+ L+E L++ + T Sbjct: 80 RSIARCLSALRQFFKFLREQKLRDDNPVATHQSPKIGRALPKDLSEHDVEALINAPDIST 139 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 + + R+ A+L +LY CGLR++E L+L + I Q LRI GKG+K R+VPL Sbjct: 140 A-----LGLRDRAMLEVLYACGLRVTELLNLRLELINLKQGFLRITGKGNKERLVPLGQY 194 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + + +Y L + LF G ++ F I++ + + HTL Sbjct: 195 ACEWVEKYLSESRPQLYKSNTDYLFLTQHGGIMSRQNFWYAIKRYALQANISAELSPHTL 254 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 RH+FATHLL++G DLR +Q +LGH LSTTQIYT+V M E++ + HP Sbjct: 255 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQHR----MQELHSKHHP 304 >gi|319953891|ref|YP_004165158.1| tyrosine recombinase xerc [Cellulophaga algicola DSM 14237] gi|319422551|gb|ADV49660.1| Tyrosine recombinase xerC [Cellulophaga algicola DSM 14237] Length = 308 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 84/302 (27%), Positives = 158/302 (52%), Gaps = 18/302 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 ++ L +E+ S T+++YE D +F++F +E + I ++SY IR +I Sbjct: 18 FIAYLSLEKKYSLNTIKAYENDLNEFILFCKDTSE----VVNIDEVSYVMIRNWIVALVA 73 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 KI +R++ R ++ +K++ K+L K + + + + + LK + + +E + ++ Sbjct: 74 AKIVNRTINRKIASLKAYYKFLLKTETISVTPLAKHKALKTAKKIEIPFSEAE----MNE 129 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 +L+ + R+ I+ LLY G+R E ++L N+ Q T+++ GK +K RIV Sbjct: 130 ILVAIPFSEDFEGIRDKLIIELLYATGIRRIELVNLKVVNVDLRQKTIKVLGKRNKERIV 189 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL---P 257 PL+ S+ EY D +++ + +F G + + R I Y GL Sbjct: 190 PLVASLVLLFQEYLDARSSVVSVGAKEFVFLLKSGGKIYETLVYRVINH---YFGLVSSK 246 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + + H LRH+FATHLL+ G DL S++ +LGH L++TQ+YT+ N + +++ ++ Sbjct: 247 VKKSPHILRHTFATHLLNKGADLNSVKELLGHASLASTQVYTH----NSIAELKKVHLKS 302 Query: 318 HP 319 HP Sbjct: 303 HP 304 >gi|237717200|ref|ZP_04547681.1| integrase [Bacteroides sp. D1] gi|262405968|ref|ZP_06082518.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_22] gi|294647940|ref|ZP_06725492.1| tyrosine recombinase XerD [Bacteroides ovatus SD CC 2a] gi|294806338|ref|ZP_06765185.1| tyrosine recombinase XerD [Bacteroides xylanisolvens SD CC 1b] gi|298479972|ref|ZP_06998171.1| tyrosine recombinase XerD [Bacteroides sp. D22] gi|229443183|gb|EEO48974.1| integrase [Bacteroides sp. D1] gi|262356843|gb|EEZ05933.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_22] gi|292636848|gb|EFF55314.1| tyrosine recombinase XerD [Bacteroides ovatus SD CC 2a] gi|294446594|gb|EFG15214.1| tyrosine recombinase XerD [Bacteroides xylanisolvens SD CC 1b] gi|295085584|emb|CBK67107.1| tyrosine recombinase XerD subunit [Bacteroides xylanisolvens XB1A] gi|298273781|gb|EFI15343.1| tyrosine recombinase XerD [Bacteroides sp. D22] Length = 319 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 90/286 (31%), Positives = 149/286 (52%), Gaps = 13/286 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + Q L++E+ LS TL +Y D + + FL T E I + + ++++ F + Sbjct: 18 RKYQQYLKLEKSLSLNTLDAYLTDLDKLMSFL---TLEGIYVLDV---CLSDLQRFAAGL 71 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 I RS R LSGIKSF ++L + K LP L ++ ++ Sbjct: 72 HDIGIHPRSQARILSGIKSFFRFLILENYLEADPSELLEGPKIGFKLPEVLTVEEIDRII 131 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 V +K RN AIL LY CGLR+SE ++L ++ D+ ++++GKG K R Sbjct: 132 SAV-----DRSKAEGQRNRAILETLYSCGLRVSELITLKLSDLYFDEGFIKVEGKGSKQR 186 Query: 199 IVPLLP-SVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGL 256 +VP+ P ++ + L D ++ + +F R GK L+ + I++L + G+ Sbjct: 187 LVPISPRAINEIKLYITDRNQIEVKKGHEDFVFVSQRRGKGLSRIMIFHMIKELAQKAGI 246 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ Sbjct: 247 TKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHID 292 >gi|161617068|ref|YP_001591033.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168238402|ref|ZP_02663460.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244638|ref|ZP_02669570.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263161|ref|ZP_02685134.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194447983|ref|YP_002047961.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194736121|ref|YP_002116878.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|161366432|gb|ABX70200.1| hypothetical protein SPAB_04901 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194406287|gb|ACF66506.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194711623|gb|ACF90844.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288766|gb|EDY28141.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|205336497|gb|EDZ23261.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205348233|gb|EDZ34864.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 300 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 91/298 (30%), Positives = 149/298 (50%), Gaps = 17/298 (5%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L+ L +ER LS +TLQ+Y+ RQ +A E +++ +Q +R+F + R + Sbjct: 14 LRYLGVERQLSPITLQNYQ---RQLDAIIALAGE--TGLKSWQQCDAAIVRSFAVRSRRK 68 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 +G SL LS ++SF +L + + + K LP+ ++ L+D Sbjct: 69 GLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDID 128 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 L + R+ A+L ++YG GLR+SE + L +++ D + + GKG K R +P Sbjct: 129 L------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLP 182 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 + + I + DL L + + LF GK ++ Q+ + GL Sbjct: 183 IGRNAVTWIEHWLDLR--GLFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVH 240 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ + +YD HP Sbjct: 241 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHP 294 >gi|298253366|ref|ZP_06977158.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1] gi|297532761|gb|EFH71647.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1] Length = 322 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 84/291 (28%), Positives = 150/291 (51%), Gaps = 15/291 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +++ + +GL + T ++Y D Q L + + I +L+ ++R++++ Sbjct: 24 DYIDYVRANKGLGERTQKAYASDILQCLAWC-----NRHGFNNISELTTDDLRSWMADE- 77 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 ++ SL R + ++ F + + + + + + K N LP L+E QA +L++ Sbjct: 78 SRSHARSSLARKVVAVRGFFAWCQHVEYISGNPAEILMTPKIKNMLPSVLDEYQAESLMN 137 Query: 140 NVLLHTSHET------KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 NV + T K + RN+AIL LLY G+R+ E SL Q+I T+++ GK Sbjct: 138 NVDSKANVSTSCPKNQKAVGLRNAAILELLYATGIRVGELTSLNIQDINFSSHTIKVTGK 197 Query: 194 GDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 G+K R+VP KA+ + D L +++ +F G RGK ++ + ++ + Sbjct: 198 GNKQRVVPFGVPAYKALSAWISKDGREILLRNSVEEAVFLGTRGKRIDQRLVRQIVHDEA 257 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + +P + H LRHS ATH+L+ G DLR +Q +LGH L+TTQ YT+V+ Sbjct: 258 KSAHVP-DISPHALRHSAATHMLNGGADLREVQELLGHSSLNTTQRYTHVS 307 >gi|325107018|ref|YP_004268086.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM 5305] gi|324967286|gb|ADY58064.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM 5305] Length = 309 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 92/311 (29%), Positives = 150/311 (48%), Gaps = 16/311 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +L+ L ER S+LT ++Y D F FL + + R + T +R +++ Sbjct: 7 GFLRYLRHERNASELTRKAYAED---FASFLDYCEDRHGYFPEPRDVDTTFLRGYLAYLH 63 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 ++ R L+ ++S +Y + ++ + +R + LP L + Sbjct: 64 DCGYQRTTIARRLACLRSLFRYCLREQLCDSNPAKALRTPRTGRKLPHYLTTSEV----- 118 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + LL + R+ AIL LY GLR++E ++L ++ D + L ++GKG K RI Sbjct: 119 SQLLEAPPANHPLGIRDRAILETLYTAGLRVAELVALDIEDWDRDANVLLVRGKGRKERI 178 Query: 200 VPLLPSVRKAI---LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 P+ +A+ LE ++ P N + Q +F G L R + + + GL Sbjct: 179 APVGSYAERALSRWLEIREVGP-RANSDDQQAIFLNKFGTRLTTRSVGRLLEKHLQTSGL 237 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 T+ HTLRHSFATHLL G DLRS+Q +LGH L+TTQIYT+V++ + + Y+ Sbjct: 238 SNKTSPHTLRHSFATHLLDGGADLRSVQELLGHKSLTTTQIYTHVSTAR----LRDTYEL 293 Query: 317 THPSITQKDKK 327 HP T +K Sbjct: 294 AHPHATAARRK 304 >gi|194445824|ref|YP_002043179.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|200387005|ref|ZP_03213617.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|194404487|gb|ACF64709.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|199604103|gb|EDZ02648.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 300 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 92/311 (29%), Positives = 154/311 (49%), Gaps = 17/311 (5%) Query: 9 IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68 + L ++ +L+ L +ER LS +TLQ+Y+ RQ +A E +++ +Q Sbjct: 1 MTDVALSQDVSRFLRYLGVERQLSPITLQNYQ---RQLDAIIALAGE--TGLKSWQQCDA 55 Query: 69 TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 +R+F + R + +G SL LS ++SF +L + + + K LP+ Sbjct: 56 AIVRSFAVRSRRKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKN 115 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 ++ L+D L + R+ A+L ++YG GLR+SE + L +++ D + Sbjct: 116 IDVDDVNRLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEV 169 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 + GKG K R +P+ + I + DL L + + LF GK ++ Q+ Sbjct: 170 WVMGKGSKERRLPIGRNAVTWIEHWLDLR--GLFASDEEALFLSKLGKRISARNVQKRFA 227 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 + GL H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ Sbjct: 228 EWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH--- 284 Query: 309 WMMEIYDQTHP 319 + +YD HP Sbjct: 285 -LASVYDAAHP 294 >gi|16762185|ref|NP_457802.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143674|ref|NP_807016.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213162145|ref|ZP_03347855.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425411|ref|ZP_03358161.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213649576|ref|ZP_03379629.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213854889|ref|ZP_03383129.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289829107|ref|ZP_06546781.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|34222945|sp|Q8Z3A8|XERC_SALTI RecName: Full=Tyrosine recombinase xerC gi|25299264|pir||AI0918 integrase/recombinase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504489|emb|CAD09371.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhi] gi|29139309|gb|AAO70876.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 300 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 91/298 (30%), Positives = 149/298 (50%), Gaps = 17/298 (5%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L+ L +ER LS +TLQ+Y+ RQ +A E +++ +Q +R+F + R + Sbjct: 14 LRYLGVERQLSPITLQNYQ---RQLDAIIALAGE--TGLKSWQQCDAAIVRSFAVRSRRK 68 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 +G SL LS ++SF +L + + + K LP+ ++ L+D Sbjct: 69 GLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDID 128 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 L + R+ A+L ++YG GLR+SE + L +++ D + + GKG K R +P Sbjct: 129 L------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLP 182 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 + + I + DL L + + LF GK ++ Q+ + GL Sbjct: 183 IGRNAVTWIEHWLDLR--GLFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVH 240 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ + +YD HP Sbjct: 241 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHP 294 >gi|89074452|ref|ZP_01160929.1| tyrosine recombinase [Photobacterium sp. SKA34] gi|89049740|gb|EAR55290.1| tyrosine recombinase [Photobacterium sp. SKA34] Length = 302 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 86/302 (28%), Positives = 155/302 (51%), Gaps = 16/302 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L ER LS T Q+Y+ RQ E +++ +Q+ +R SK + Sbjct: 17 LRSERELSLHTQQNYK---RQLTRIAEQLVE--LSVDNWQQVDAGWVRQIASKGMRDGLK 71 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 SL LS ++SF +L + + + + +K+ LP+ L+ + L+D Sbjct: 72 ASSLAMRLSALRSFFDFLVHQNVLKANPAKGVAAPRKARPLPKNLDVDEMNQLLD----- 126 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 ++ + R+ A++ L+YG GLR++E + + ++I + LR+ GKGDK R+VP Sbjct: 127 -VNDDDPLAIRDRAMMELMYGAGLRLAELVGIDVRHISLSKGDLRVIGKGDKERVVPFSG 185 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 R+ + ++ L ++ L + LF G ++ Q+ + + + + H Sbjct: 186 LAREWVAKWLKLRD-NIALAEEPALFVSKLGTRISTRNVQKRMAEWGQKQAVSSHINPHK 244 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 LRHSFATH+L + GDLR++Q +LGH LSTTQIYT+++ ++ + ++YD+ HP ++ Sbjct: 245 LRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LAKVYDEAHPRAKKR 300 Query: 325 DK 326 +K Sbjct: 301 NK 302 >gi|289523581|ref|ZP_06440435.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503273|gb|EFD24437.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 297 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 85/299 (28%), Positives = 148/299 (49%), Gaps = 21/299 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ L+ G + T+ +Y D QF+ ++ ++ + ++ IRAF+ + Sbjct: 12 FLEYLKYVSGRTDNTVINYAVDLSQFVDYVI-----SQGVEEVEKIEQAHIRAFLRELAA 66 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 S+ R LS ++S+ +L + T +R K+ LPRAL + +++N Sbjct: 67 YGYSKSSVLRKLSSLRSWTNFLLQSGKLTSDPTKGVRGPKEPKRLPRALAYEDVKMMLEN 126 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + R+ AIL LLYGCGLR++E ++L +++ ++ LR++GKG+K R+V Sbjct: 127 ------GPNGEFEIRDRAILELLYGCGLRVAELVALDWEDVDIEERWLRVKGKGEKERLV 180 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 P+ +KA+ E+ + PLF G + + R + + + +GL Sbjct: 181 PMGRHAQKALREWQVFLG-----KLSGPLFPGDGCERIAVRTVHRVVSRAAKRVGLA-GV 234 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H LRHSFATH+L G LR +Q +LGH L TTQ Y ++ + + + Y HP Sbjct: 235 SPHMLRHSFATHMLEGGASLRVLQELLGHQSLVTTQRYLKISYEQ----LKKSYINAHP 289 >gi|68249255|ref|YP_248367.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae 86-028NP] gi|319775473|ref|YP_004137961.1| site-specific tyrosine recombinase [Haemophilus influenzae F3047] gi|81336341|sp|Q4QMP0|XERC_HAEI8 RecName: Full=Tyrosine recombinase xerC gi|68057454|gb|AAX87707.1| site-specific recombinase XerC [Haemophilus influenzae 86-028NP] gi|317450064|emb|CBY86278.1| site-specific tyrosine recombinase [Haemophilus influenzae F3047] Length = 295 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 94/304 (30%), Positives = 152/304 (50%), Gaps = 25/304 (8%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L IER +S T+ +Y+ + LA + I + Q++ + +R +++ + Q + Sbjct: 12 LRIERQMSPHTITNYQHQLDATIKILA-----QQDIHSWTQVTPSVVRFILAESKKQGLK 66 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 ++SL LS ++ FL +L ++ + + K+ LP+ ++ +Q + +L + Sbjct: 67 EKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGWHLPKNMDGEQ----IQQLLAN 122 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 S E ID R+ AIL L+Y GLR+SE L +I +R+ GKG+K R+VP Sbjct: 123 DSKEP--IDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGR 180 Query: 205 SVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 AI E+ + P D LF G ++ Q+ + GL Sbjct: 181 YASHAIQEWLKVRALFNPKDE------ALFVSQLGNRISHRAIQKRLETWGIRQGLNSHL 234 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 H LRHSFATH+L DLR++Q +LGH LSTTQIYT++N ++ + E+YDQ HP Sbjct: 235 NPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEVYDQAHPR 290 Query: 321 ITQK 324 +K Sbjct: 291 AKRK 294 >gi|320532036|ref|ZP_08032926.1| site-specific tyrosine recombinase XerC [Actinomyces sp. oral taxon 171 str. F0337] gi|320135749|gb|EFW27807.1| site-specific tyrosine recombinase XerC [Actinomyces sp. oral taxon 171 str. F0337] Length = 307 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 87/301 (28%), Positives = 148/301 (49%), Gaps = 17/301 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ-TIRQLSYTEIRAFISKRRTQKI 83 L ++R LS T+++Y D L FL ++ + + L ++R +++ Sbjct: 16 LALQRDLSGHTVRAYLVDVSDLLSFLGVGEKDTEPVDPALATLDLADLRDWLAAMAASGH 75 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 +L R + +++F + + + +R + N LP L +QA L+ Sbjct: 76 SRATLARRSASVRTFSSWAFEAGLLASDVAARLRAPRVDNRLPGVLTTQQASQLLKTAA- 134 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL- 202 + + + + R+ AI+ LY G+R+SE + L ++ Q TLR+ GKG K R VP Sbjct: 135 DLASDRQVLAVRDLAIIETLYATGVRVSELIGLDVADLDHSQRTLRVLGKGRKERTVPYG 194 Query: 203 LPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 LP+ R A+ E+ ++C D LF G RG+ ++P + + +L +P Sbjct: 195 LPAAR-ALEEWLRRRGEICAVDAGG----ALFLGARGRRIDPRAVRDVVHRLCSAAQVP- 248 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 H LRHS ATH+L G DLRS+Q +LGH L+TTQ YT+V+++ + +Y+Q Sbjct: 249 DLGPHGLRHSTATHVLGGGADLRSVQELLGHSSLATTQRYTHVSAER----LRSVYEQAF 304 Query: 319 P 319 P Sbjct: 305 P 305 >gi|262274923|ref|ZP_06052734.1| site-specific recombinase XerD [Grimontia hollisae CIP 101886] gi|262221486|gb|EEY72800.1| site-specific recombinase XerD [Grimontia hollisae CIP 101886] Length = 298 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 90/303 (29%), Positives = 151/303 (49%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + +ERGLS+ TL SY D + +L E +T+ + Y ++ + Sbjct: 9 EQFLDAMWMERGLSENTLASYRNDLTKLCQWLDKDGELLVTVACSKLQEYQHWLFDLNYK 68 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 ++ + R LS ++ +YL + K+ + + + K LP+ L+E Q L+ Sbjct: 69 QSSR------ARMLSAMRRLFQYLYREKLREDDPTATLISPKLPKRLPKDLSEAQVEALL 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + I+ R+ A+L LLY GLR++E +SLT +N+ Q +R+ GKG K R Sbjct: 123 D-----APNVEDVIELRDKAMLELLYATGLRVTELISLTTENVSLRQGVVRVIGKGGKER 177 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ + + + Y P L F R + + F I+ G+ Sbjct: 178 LVPMGEAAIEWLEHYMAHSRPALLGEQSSDVFFPSRRARMMTRQTFWHRIKFYAALAGID 237 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ + Sbjct: 238 GEMLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQE 293 Query: 317 THP 319 HP Sbjct: 294 HHP 296 >gi|257056527|ref|YP_003134359.1| tyrosine recombinase XerD subunit [Saccharomonospora viridis DSM 43017] gi|256586399|gb|ACU97532.1| tyrosine recombinase XerD subunit [Saccharomonospora viridis DSM 43017] Length = 311 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 93/312 (29%), Positives = 149/312 (47%), Gaps = 33/312 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 ++ +L +ERG ++ T+ Y D R++L LA + +RQ++ + F + R Sbjct: 16 YVDHLTVERGTARNTVDGYARDLRRYLAHLA-----DAGVTDLRQVARDHVVGFAASLRH 70 Query: 81 QKIGDR------SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 + GDR S R+LS ++ ++ T E ++R + LP+AL Sbjct: 71 GE-GDRPPLAPSSAARALSAVRGLHRFAHAEGWTEEDPARDVRPPPLTRRLPKALPVADV 129 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 L L++ T + + + R+ A+L LLY G RISEA L ++ + T+ + GKG Sbjct: 130 LRLLNTP---TGDDARSL--RDRALLELLYSTGARISEATGLDVDDVDRAERTVVLDGKG 184 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL------PLFRGIRGKPLN-PGVFQRYI 247 + R+VP V + LE D + +F RG L+ G +Q + Sbjct: 185 GRQRLVP----VGRPALEALDAYLIRARPALAAKGRGTGAVFLNARGGRLSRQGAWQ-VL 239 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 + G+ + HTLRHSFATHLL G D+R +Q +LGH ++TTQ+YT V Sbjct: 240 KVAAERAGISTPVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTVNT-- 297 Query: 308 DWMMEIYDQTHP 319 + E+Y THP Sbjct: 298 --LREVYATTHP 307 >gi|126640334|ref|YP_001083318.1| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC 17978] Length = 250 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 81/240 (33%), Positives = 130/240 (54%), Gaps = 11/240 (4%) Query: 82 KIGD--RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 K+G RS+ R LS ++ F K+L+++K+ +++ + + K +LP+ L+E+ L+ Sbjct: 18 KVGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVEALIQ 77 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + T+ + R+ A+ +LY CGLR+SE L+L + I Q LRI GKG+K R+ Sbjct: 78 APDITTA-----LGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRITGKGNKERL 132 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 VPL + Y + L + LF G ++ F I+ + Sbjct: 133 VPLGQYACDWVERYLNEARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKHYALQANIQAE 192 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V M +++++ HP Sbjct: 193 LSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR----MQQLHEKHHP 248 >gi|145219991|ref|YP_001130700.1| tyrosine recombinase XerD [Prosthecochloris vibrioformis DSM 265] gi|145206155|gb|ABP37198.1| tyrosine recombinase XerD [Chlorobium phaeovibrioides DSM 265] Length = 306 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 86/308 (27%), Positives = 150/308 (48%), Gaps = 25/308 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +N+L L IER S T SY D +++L + + ++ ++ I F+ + Sbjct: 15 ENFLNYLLIERNFSPNTRDSYRNDLQRYLQAM------QEGCGSLEAINPDSINRFLDEL 68 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S+ R++S I+S ++L ++ + N+ K LP L + + ++ Sbjct: 69 HKTGLEASSIARNVSAIRSLHRFLINDRVLESNPAENLHQPKLPKYLPSVLTLDETMRIL 128 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 E ++ R+ AIL LLY G+R+SE ++L QN+ + +R+ GKG K R Sbjct: 129 QAPAQKVPPEKLYL--RDQAILELLYATGMRVSELVNLKQQNLYLPEQFIRVFGKGSKER 186 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-------LFRGIRGKPLNPGVFQRYIRQLR 251 +VP+ S ++ Y L IQL LF RGK ++ +++ Sbjct: 187 LVPVGSSAVNSLTLYRQ------KLRIQLAGAQSEDCLFLNARGKKMSRMAVFTIVKEYA 240 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 G+P + + HT RH+FATHLL G DLR++Q +LGH + TQIY++++ ++ Sbjct: 241 MLAGIPKTVSPHTFRHTFATHLLEGGADLRAVQEMLGHSSIVATQIYSHIDR----SFVK 296 Query: 312 EIYDQTHP 319 E++ HP Sbjct: 297 EVHRSFHP 304 >gi|327395985|dbj|BAK13407.1| tyrosine recombinase XerC [Pantoea ananatis AJ13355] Length = 301 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 90/301 (29%), Positives = 148/301 (49%), Gaps = 19/301 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +L++L++ER LS LTL SY RQ + E KI+ + QL +R+ ++ R Sbjct: 11 GFLRHLKVERQLSPLTLSSY---ARQLAALVTIADEMKISAWS--QLDPAMVRSMAARSR 65 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + SL LS ++SFL + R + + + + LP+ ++ L++ Sbjct: 66 RAGLAASSLALRLSALRSFLDWQVSRDMLAANPAKGIATPRNGRHLPKNIDVDDVNQLLE 125 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 L T + R+ +L ++YG GLR+SE +++ +++ + + + GKG K R Sbjct: 126 IDL------TDPLAIRDRTMLEVMYGGGLRLSELVNMDCRHVDLEAGEVWVLGKGSKERR 179 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VP+ R A+ P N LF RG ++ Q+ + G+ Sbjct: 180 VPI---GRTAVSWIQQWLPLRTAFNPGDDALFLSSRGSRISARNVQKRFAEWGIKQGISS 236 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 H LRHSFATHLL + GDLR++Q +LGH LSTTQIYT+++ ++ + +YD H Sbjct: 237 HIHPHKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LASVYDAAH 292 Query: 319 P 319 P Sbjct: 293 P 293 >gi|255325242|ref|ZP_05366348.1| tyrosine recombinase XerC [Corynebacterium tuberculostearicum SK141] gi|255297807|gb|EET77118.1| tyrosine recombinase XerC [Corynebacterium tuberculostearicum SK141] Length = 305 Score = 122 bits (306), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 81/291 (27%), Positives = 140/291 (48%), Gaps = 19/291 (6%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 +G ++ T++ Y D R ++ T + +R ++++ + +L Sbjct: 32 KGRAEATVRGYRSDLRDL----------ARSVPTFAEFDLNSLRQWLAEAVAEGKSRSTL 81 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 R + K F + + + K LP L +QA L+ N + ++ E Sbjct: 82 ARRTAAAKGFSTWAVREGHLKRDVAARLVTPKVGRHLPTVLAPEQAGELMGNAV--SADE 139 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 ++ R+SAIL LLY G+R++E + L +I + TL + GKG+K R+VP + Sbjct: 140 VHFL--RDSAILELLYASGMRVAELVRLDLGDIDFQRGTLHVTGKGNKQRVVPFGHAAED 197 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 A+ ++ D ++ +F G RG ++ +R + + + G T H +RHS Sbjct: 198 ALKQWIDKGRGEIAAAGTEAVFVGSRGGRIDQRQVRRIVEKAAKVTGTQ-GLTPHGVRHS 256 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 ATHLL G DLR +Q +LGH L+TTQIYT+V+++ + +YDQ HP Sbjct: 257 AATHLLEGGADLRVVQELLGHSSLNTTQIYTHVSAQR----LQRVYDQAHP 303 >gi|331665461|ref|ZP_08366360.1| tyrosine recombinase XerC [Escherichia coli TA143] gi|331057359|gb|EGI29348.1| tyrosine recombinase XerC [Escherichia coli TA143] Length = 298 Score = 122 bits (306), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 92/307 (29%), Positives = 154/307 (50%), Gaps = 17/307 (5%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L + + +L+ L +ER LS +TL +Y+ RQ + F +E +Q+ +Q T +R Sbjct: 3 DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIINFASEN--GLQSWQQCDVTMVR 57 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F + R + +G SL LS ++SF +L + + + K LP+ ++ Sbjct: 58 NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSVPKAPRHLPKNIDVD 117 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 L+D + + R+ A+L ++YG GLR+SE + L +++ + + + G Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 KG K R +P+ + I + DL DL + LF GK ++ Q+ + Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 GL H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ + Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285 Query: 313 IYDQTHP 319 +YD HP Sbjct: 286 VYDAAHP 292 >gi|283788448|ref|YP_003368313.1| tyrosine recombinase [Citrobacter rodentium ICC168] gi|282951902|emb|CBG91620.1| tyrosine recombinase [Citrobacter rodentium ICC168] Length = 298 Score = 122 bits (306), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 91/304 (29%), Positives = 159/304 (52%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +E+ L++ TL +Y D + +LA K +++T + +++A +++R Sbjct: 9 EQFLDALWLEKNLAENTLSAYRRDLTMLVEWLA---HRKASLETAQS---EDLQALLAER 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ ++L + KI + + + K LP+ L+E Q L+ Sbjct: 63 MDGGYKATSTARLLSAVRRLFQHLYREKIRPDDPSAALASPKLPQRLPKDLSEAQVERLL 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 ++ ++ R+ A+L +LY GLR+SE + LT ++ Q +R+ GKG+K R Sbjct: 123 QAPVVDQP-----LELRDKAMLEILYATGLRVSELVGLTMSDVSLRQGVVRVIGKGNKER 177 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VPL + Y + P+ LN ++I + LF R + + F I+ G+ Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292 Query: 316 QTHP 319 Q HP Sbjct: 293 QHHP 296 >gi|228471614|ref|ZP_04056388.1| tyrosine recombinase XerC [Capnocytophaga gingivalis ATCC 33624] gi|228277033|gb|EEK15719.1| tyrosine recombinase XerC [Capnocytophaga gingivalis ATCC 33624] Length = 296 Score = 122 bits (306), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 92/303 (30%), Positives = 155/303 (51%), Gaps = 18/303 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E+ S T+ +Y D ++F +L TE + T+ + Q++Y+ IR++I + I Sbjct: 9 LSLEKKYSSHTVTAYLADVQEFAAYL---TEVEPTM-LLPQVNYSLIRSWIIHLVERGIT 64 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALTLVDNVL 142 +RS+ R L+ +K++ +L + S + LK K S+P + E +D+VL Sbjct: 65 NRSINRKLASLKAYYAFLVRTLAIKASPFVPHIPLKAPKKISIPFSSRE------IDSVL 118 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202 E + RN I+ L Y G+R +E + L +I Q T+++ GK +K RI+PL Sbjct: 119 SQPIVEDSYTQMRNKTIIELFYATGMRRAELIDLKISDIDFSQKTVKVLGKRNKERIIPL 178 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 + +V + + +Y L + N ++ LF +GK + P + I L + Sbjct: 179 IHTVVETLEKYLTLRK-GVETN-EVFLFLTDKGKKMYPKLVYNIINSYFSTATTKLKKSP 236 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322 H LRHSFATHLL NG DL +++ +LGH L+ TQ+YT+ + + Y HP +T Sbjct: 237 HVLRHSFATHLLDNGADLNAVKELLGHAGLAATQVYTHSSIAELKNQ----YKNAHPRMT 292 Query: 323 QKD 325 K+ Sbjct: 293 NKE 295 >gi|311064002|ref|YP_003970727.1| integrase/recombinase [Bifidobacterium bifidum PRL2010] gi|310866321|gb|ADP35690.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum PRL2010] Length = 322 Score = 122 bits (306), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 90/319 (28%), Positives = 153/319 (47%), Gaps = 29/319 (9%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++ ++ +ERGL++ T+++YE D R++L +LA I + +I ++++ Sbjct: 11 QFIAHISVERGLARATVRAYESDLRRYLSWLAHTR----GITDPDAIGKADIEEYVAQLD 66 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + RS R L+ I F ++ + ++ ++ K + LP L + L+D Sbjct: 67 SDGDSARSKARRLASIHEFHRFALAQHAVSDDVSATVKAPKSAQMLPDVLTIDEVSRLLD 126 Query: 140 NVLLHTSHETKWI----------DA---RNSAILYLLYGCGLRISEALSLTPQNI-MDDQ 185 + H T DA R+ A+L +Y G R+SEA+ + +I +DD Sbjct: 127 AIP--DPHGTDAARGRAGIGALPDAVLLRDRALLEFMYATGCRVSEAVGMNLDDIDIDDA 184 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGI----RGKPLNP 240 R+ GKG K R+VPL +A+ Y L + P R + RG+ L+ Sbjct: 185 HVARLTGKGSKQRLVPLGEYACRALRRYLAEGRGTLEGRAKGTPERRAVFLNKRGRRLSR 244 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 I+ G+ HTLRHSFATHL+ G D+R++Q +LGH ++TTQIYT+ Sbjct: 245 QSVWEVIKLAGERAGIDRPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTH 304 Query: 301 VNSKNGGDWMMEIYDQTHP 319 V+ + ++E Y +HP Sbjct: 305 VSPET----LIEAYLTSHP 319 >gi|329114345|ref|ZP_08243107.1| Tyrosine recombinase XerD [Acetobacter pomorum DM001] gi|326696421|gb|EGE48100.1| Tyrosine recombinase XerD [Acetobacter pomorum DM001] Length = 306 Score = 122 bits (306), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 97/289 (33%), Positives = 148/289 (51%), Gaps = 16/289 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE-IRAFISKRR 79 +L+ L ER + TL +YE D LA E T+QT + TE ++ +++ Sbjct: 9 FLEMLAAERAAAPNTLAAYEADLTSCAESLA---REGQTLQT----ATTEGLQNWMAALV 61 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 R++ R LS I+ F +L + + ++ ++ + K LPR L+E + L L++ Sbjct: 62 GSGQARRTVARRLSCIRQFYLFLLREGMRADNPAAHLDSPKPRTPLPRFLSESEVLALLN 121 Query: 140 NVLL--HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 S K A L LLY GLRISE L+L + I DQ + ++GKG + Sbjct: 122 ACAEPDGASLPKKRRGILAKAALELLYASGLRISELLALPRKAIAGDQRMIMVRGKGGRE 181 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLR-RYLG 255 R+VPL S R+A ++ D +L LF G KP+ F R + + R Sbjct: 182 RLVPLSDSAREAAQALLEV---DAHLESAF-LFPGRDPAKPMTRQAFDRILHTVAIRAEI 237 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 P + H LRHSFATHLL++G DLR++Q +LGH ++TTQIYT+V ++ Sbjct: 238 DPARLSPHVLRHSFATHLLAHGADLRALQMLLGHADIATTQIYTHVQTE 286 >gi|260599234|ref|YP_003211805.1| site-specific tyrosine recombinase XerD [Cronobacter turicensis z3032] gi|260218411|emb|CBA33498.1| Tyrosine recombinase xerD [Cronobacter turicensis z3032] Length = 298 Score = 122 bits (306), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 92/303 (30%), Positives = 154/303 (50%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ER L++ +L +Y D + +L T+Q+ +++ +++R Sbjct: 9 EQFLDALWLERNLAENSLSAYRRDLSMVVEWLHHRGLSLATVQS------GDLQTLLAER 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ ++L + KI + + + K LP+ L+E Q V Sbjct: 63 VEGGYKATSTARMLSAVRRLFQHLYREKIRDDDPSALLASPKLPQRLPKDLSEAQ----V 118 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D +L + E I+ R+ A+L +LY GLR+SE + LT ++ Q +R+ GKG+K R Sbjct: 119 DRLLQAPTVEEP-IELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVIGKGNKER 177 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL + +Y P+ LN LF R + + F I+ + G+ Sbjct: 178 LVPLGEEAVYWVEQYLTHGRPWLLNGQSLDILFPSNRARQMTRQTFWHRIKHYAQLAGID 237 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Q Sbjct: 238 SEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQ 293 Query: 317 THP 319 HP Sbjct: 294 HHP 296 >gi|284006600|emb|CBA71861.1| phage integrase [Arsenophonus nasoniae] Length = 297 Score = 122 bits (306), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 89/304 (29%), Positives = 156/304 (51%), Gaps = 24/304 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L+ L +ER LS +TL +Y+ RQ + + + + I QL + +R ++K R Sbjct: 7 DFLRYLRVERQLSPVTLINYQ---RQLAVLVDMAID--MDINDWAQLETSHVRMMVAKCR 61 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q + SL LS ++SFL +L + + T + +R K LP+ ++ + L++ Sbjct: 62 RQGLQAASLALRLSSLRSFLDWLVGQGLITANPAKTIRAPKNKRHLPKNIDVDEVNQLLN 121 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 L + R+ +L ++YG GLR+SE ++L Q++ +R+ GKG K R Sbjct: 122 IDLADP------LSVRDRTMLEVMYGAGLRLSELINLNCQHLDLQSGEVRVMGKGSKERK 175 Query: 200 VPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 VPL + ++ + ++ D + I + + I + + IRQ G Sbjct: 176 VPLGRIAVEWLIRWLEMRQQYAKQDEAVFISIQRGKRISARNVQKRFALWGIRQ-----G 230 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H LRHSFATH+L + GDLR++Q +LGH LSTTQ+YT+++ ++ + ++YD Sbjct: 231 VRSHIHPHKLRHSFATHILESSGDLRAVQELLGHANLSTTQVYTHLDFQH----LAKVYD 286 Query: 316 QTHP 319 HP Sbjct: 287 VAHP 290 >gi|218701603|ref|YP_002409232.1| site-specific tyrosine recombinase XerD [Escherichia coli IAI39] gi|254037938|ref|ZP_04871996.1| site-specific tyrosine recombinase [Escherichia sp. 1_1_43] gi|218371589|emb|CAR19428.1| site-specific tyrosine recombinase [Escherichia coli IAI39] gi|226839562|gb|EEH71583.1| site-specific tyrosine recombinase [Escherichia sp. 1_1_43] Length = 298 Score = 122 bits (306), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 91/304 (29%), Positives = 158/304 (51%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +E+ L++ TL +Y R + + + +T+ T++ +++A +++R Sbjct: 9 EQFLDALWLEKNLAENTLNAYR---RDLSMMVEWLHHRGLTLATVQS---DDLQALLAER 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K + ++ + K LP+ L+E Q L+ Sbjct: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L+ ++ R+ A+L +LY GLR+SE + LT +I Q +R+ GKG+K R Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VPL + Y + P+ LN ++I + LF R + + F I+ G+ Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292 Query: 316 QTHP 319 Q HP Sbjct: 293 QHHP 296 >gi|312139850|ref|YP_004007186.1| tyrosine recombinase xerd [Rhodococcus equi 103S] gi|311889189|emb|CBH48503.1| tyrosine recombinase XerD [Rhodococcus equi 103S] Length = 309 Score = 122 bits (306), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 87/308 (28%), Positives = 145/308 (47%), Gaps = 17/308 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++L +L +ERG ++ TL SY D ++ FL E IR ++ T++ F+ Sbjct: 9 DSYLDHLAVERGAARNTLTSYRRDLDRYARFL-----EARGTDDIRSVTETDVSEFVVAL 63 Query: 79 R-------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131 R + S R+L ++ ++ +T+ ++ LP++L Sbjct: 64 RKGDPAEGVVALAPSSAARALIAVRGLHRFAAAEGVTSGDVARAVKPPTPGRRLPKSLPL 123 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 L +++ S + R+ A+L LLY G RISEA+ L ++ ++ ++ Sbjct: 124 DDVLAILEASGGDGSADNPRT-LRDRALLELLYSTGARISEAVGLDVDDLDTQSRSVLLR 182 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 GKG K R+VP+ AI Y L++ LF +RG L+ + + Sbjct: 183 GKGGKERVVPVGRPAITAIDNYLVRGRPALSVRGGPALFLNVRGGRLSRQSAWQVLHTAA 242 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 G+ ++ + HTLRHSFATHLL G D+R +Q +LGH ++TTQIYT V + Sbjct: 243 EKAGIAVAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVGA----LR 298 Query: 312 EIYDQTHP 319 E++ Q HP Sbjct: 299 EVWAQAHP 306 >gi|293610050|ref|ZP_06692351.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827282|gb|EFF85646.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 306 Score = 122 bits (306), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 81/240 (33%), Positives = 132/240 (55%), Gaps = 11/240 (4%) Query: 82 KIGD--RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 K+G RS+ R LS ++ F K+L+++K+ +++ + + K +LP+ L+E+ L+ Sbjct: 74 KVGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVEALIQ 133 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 ++T+ + R+ A+ +LY CGLR+SE L+L + I Q LRI GKG+K R+ Sbjct: 134 APDINTA-----LGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRITGKGNKERL 188 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 VPL + + Y L + LF G ++ F I++ + Sbjct: 189 VPLGQFACEWVERYLQDARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAE 248 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V M +++++ HP Sbjct: 249 LSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR----MQQLHEKHHP 304 >gi|327479757|gb|AEA83067.1| site-specific tyrosine recombinase XerD [Pseudomonas stutzeri DSM 4166] Length = 298 Score = 122 bits (306), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 96/308 (31%), Positives = 148/308 (48%), Gaps = 32/308 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKRR 79 +L L +E+GL+ + ++Y D F +L E + + R++ I ++ R Sbjct: 12 YLDALWLEKGLADNSREAYRNDLASFNGWL---QERGVRLAAAGREI----ILDHLAWRL 64 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 RS R LSG++ F +YL + + L + + LP+AL+E Sbjct: 65 NNGYKARSTARFLSGLRGFYRYLLREGEISLDPTLRVDLPRLGRPLPKALSEADV----- 119 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 LL + R+ A+L +LY CGLR++E +SLT + + Q LR GKG+K R+ Sbjct: 120 EALLAAPDTGDPLGLRDRAMLEVLYACGLRVTELISLTLEQVSMRQGVLRTFGKGNKERL 179 Query: 200 VPLLPSV--------RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 VPL R A + P D+ LF RG+ + F I+ Sbjct: 180 VPLGEEALHWLQRYQRDARDQLLAGRPSDV-------LFPSQRGEQMTRQTFWHRIKLHA 232 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 R G+ + HTLRH+FATHLL++G DLR++Q +LGH LSTTQIYT++ + Sbjct: 233 RVAGIATGISPHTLRHAFATHLLNHGADLRTVQMLLGHSDLSTTQIYTHIARAR----LQ 288 Query: 312 EIYDQTHP 319 E++ HP Sbjct: 289 ELHATHHP 296 >gi|116333446|ref|YP_794973.1| integrase [Lactobacillus brevis ATCC 367] gi|116098793|gb|ABJ63942.1| tyrosine recombinase XerC subunit [Lactobacillus brevis ATCC 367] Length = 311 Score = 122 bits (306), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 88/288 (30%), Positives = 139/288 (48%), Gaps = 10/288 (3%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 ++ L ER S T+++Y D +F+ FLA EK I QL ++ ++S Sbjct: 8 FMTYLSGERQYSAETVKAYHEDLSEFVQFLADNGGEK-PWTAIDQL---DVEVYLSDLYD 63 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + ++ R LS ++S +L + ++ + N LPR E++ L Sbjct: 64 RHYARTTIARKLSTLRSLYSFLMSNGQAQDDPFAYVQLKRHQNHLPRFFYEREMTALFTA 123 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 ++ + + R++A+L +LYG G+R+SE ++L I D + I GKG+K R V Sbjct: 124 A---AANPNEQLATRDTALLEVLYGTGIRVSECVNLALSEIDFDGRIMLIHGKGNKERYV 180 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 P A+ Y+D L Q +F RG+ L + Q+ + L Sbjct: 181 PFGHYASDALQTYFDTARTPLMAQYQQDHPYVFINHRGQQLTSAGVTYLLNQIIKRSTLT 240 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 H LRH+FATHLL+ G DLRS+Q +LGH LSTTQIYT+V ++ Sbjct: 241 TDIHPHMLRHTFATHLLNRGADLRSVQELLGHSSLSTTQIYTHVTREH 288 >gi|238759282|ref|ZP_04620448.1| Tyrosine recombinase xerD [Yersinia aldovae ATCC 35236] gi|238702443|gb|EEP94994.1| Tyrosine recombinase xerD [Yersinia aldovae ATCC 35236] Length = 299 Score = 122 bits (306), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 91/303 (30%), Positives = 156/303 (51%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ER L++ TL SY D +L + + ++ + Q ++++F+++R Sbjct: 10 EQFLDALWLERNLAENTLASYRLDLHALTGWLECHGSD--LLRAVPQ----DLQSFLAER 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K+ + + + K LP+ L+E Q Sbjct: 64 IEGGYKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQV---- 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + LL++ + ++ R+ A+L +LY GLR+SE + LT ++ Q +R+ GKG+K R Sbjct: 120 -DALLNSPNVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKER 178 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL I Y + P+ +N LF R + + F I+ G+ Sbjct: 179 LVPLGEEAVYWIENYMEHGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGID 238 Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Q Sbjct: 239 SERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQQ 294 Query: 317 THP 319 HP Sbjct: 295 HHP 297 >gi|224282680|ref|ZP_03646002.1| Integrase [Bifidobacterium bifidum NCIMB 41171] gi|310287139|ref|YP_003938397.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum S17] gi|313139838|ref|ZP_07802031.1| tyrosine recombinase xerD [Bifidobacterium bifidum NCIMB 41171] gi|309251075|gb|ADO52823.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum S17] gi|313132348|gb|EFR49965.1| tyrosine recombinase xerD [Bifidobacterium bifidum NCIMB 41171] Length = 322 Score = 122 bits (306), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 90/320 (28%), Positives = 153/320 (47%), Gaps = 29/320 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++ ++ +ERGL++ T+++YE D R++L +LA I + +I ++++ Sbjct: 10 DQFIAHISVERGLARATVRAYESDLRRYLSWLAHTR----GITDPDAIGKADIEEYVAQL 65 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + RS R L+ I F ++ + ++ ++ K + LP L + L+ Sbjct: 66 DSDGDSARSKARRLASIHEFHRFALAQHAVSDDVSATVKAPKSAQMLPDVLTIDEVSRLL 125 Query: 139 DNVLLHTSHETKWI----------DA---RNSAILYLLYGCGLRISEALSLTPQNI-MDD 184 D + H T DA R+ A+L +Y G R+SEA+ + +I +DD Sbjct: 126 DAIP--DPHGTDAARGRAGIGALPDAVLLRDRALLEFMYATGCRVSEAVGMNLDDIDIDD 183 Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGI----RGKPLN 239 R+ GKG K R+VPL +A+ Y L + P R + RG+ L+ Sbjct: 184 AHVARLTGKGSKQRLVPLGEYACRALRRYLAEGRGTLEGRAKGTPDRRAVFLNKRGRRLS 243 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 I+ G+ HTLRHSFATHL+ G D+R++Q +LGH ++TTQIYT Sbjct: 244 RQSVWEVIKLAGERAGIDRPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYT 303 Query: 300 NVNSKNGGDWMMEIYDQTHP 319 +V+ + ++E Y +HP Sbjct: 304 HVSPET----LIEAYLTSHP 319 >gi|119943804|ref|YP_941484.1| tyrosine recombinase XerC [Psychromonas ingrahamii 37] gi|254799353|sp|A1SQX0|XERC_PSYIN RecName: Full=Tyrosine recombinase xerC gi|119862408|gb|ABM01885.1| tyrosine recombinase XerC subunit [Psychromonas ingrahamii 37] Length = 299 Score = 122 bits (306), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 84/304 (27%), Positives = 153/304 (50%), Gaps = 16/304 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L ++ +RGLS +T+ +Y+ + +F+ A E K+ T +L +R + Sbjct: 11 YLNHIASQRGLSPVTITNYQSNLAEFV---ALLNENKVGCWT--ELDGQLVRLMVKTLHK 65 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + RS+ LS ++SFL YL + I + + + K LP+ ++ L+D Sbjct: 66 KGLKARSIATKLSALRSFLDYLVQFDILSNNPAKGIAAPKLDKPLPKNVSVDDMFQLLD- 124 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 E + R+ ++ L+Y GLR+SE + + Q+I + + GKG K R++ Sbjct: 125 -----IDEKDPLSIRDQCMMELMYSSGLRLSELVGINLQDIKLSAKEIMVTGKGSKQRLL 179 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 P+ + + + P + + + LF + K ++ Q + + LP Sbjct: 180 PITDRAVATVKIWLKIRP-EFCIKDEKALFVSKQKKRISARNVQARMEKWGLKQALPGHI 238 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 H LRHSFATH+L + G+LR++Q++LGH L+TTQIYT+++ ++ + +IYDQ HP Sbjct: 239 NPHKLRHSFATHMLESSGNLRAVQTLLGHADLATTQIYTHLDFQH----LSKIYDQAHPR 294 Query: 321 ITQK 324 +K Sbjct: 295 AKRK 298 >gi|317508416|ref|ZP_07966086.1| phage integrase [Segniliparus rugosus ATCC BAA-974] gi|316253263|gb|EFV12663.1| phage integrase [Segniliparus rugosus ATCC BAA-974] Length = 308 Score = 122 bits (306), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 92/306 (30%), Positives = 142/306 (46%), Gaps = 26/306 (8%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 ++L ERG S T+++Y D R + F E + ++ ++R ++S+ + Sbjct: 18 RHLRFERGRSPNTVRAYLGDLRAY--FGPARDETAPARDVLGAVTIADLRGWLSEMTAEG 75 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE---KQALTLV- 138 +L R SG+K+F ++ + + + + K +LP L + +QALT Sbjct: 76 ASRATLARRASGMKTFFEWAVRGGLAAHDPTVRLTTPKLRKALPHVLRKDQAEQALTSAP 135 Query: 139 ---DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 D LL R+ +L LLYG G+R+ E L ++ + + GKGD Sbjct: 136 APSDGALL----------LRDQLVLELLYGTGMRVGELCGLDVDDVDQGRRLATVLGKGD 185 Query: 196 KIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ-LRRY 253 K R+VP AI + D P L G RG L+ +R + + + R Sbjct: 186 KQRVVPFGAKASDAISAWLRDGRPKLAGPRSGAALLLGARGGRLDQRTARRVVHERVARE 245 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 GLP H LRHS ATHLL G DLR +Q ILGH L+TTQIYT+V+ + + + Sbjct: 246 PGLP-DLGPHGLRHSAATHLLEGGADLRVVQEILGHSSLATTQIYTHVSVER----IRAV 300 Query: 314 YDQTHP 319 + Q HP Sbjct: 301 HSQAHP 306 >gi|237729834|ref|ZP_04560315.1| site-specific tyrosine recombinase XerD [Citrobacter sp. 30_2] gi|226908440|gb|EEH94358.1| site-specific tyrosine recombinase XerD [Citrobacter sp. 30_2] Length = 298 Score = 122 bits (306), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 92/304 (30%), Positives = 155/304 (50%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ER L++ TL +Y D + +L T Q+ +++A +++R Sbjct: 9 EQFLDALWLERNLAENTLSAYRRDLTMLVEWLHHRGASLATAQS------DDLQALLAER 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS + F ++L + K + ++ + K LP+ L+E Q L+ Sbjct: 63 MDGGYKATSSARLLSATRRFFQHLYREKYREDDPSASLASPKLPQRLPKDLSEAQVERLL 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L+ ++ R+ A+L +LY GLR+SE + LT ++ Q +R+ GKG+K R Sbjct: 123 QAPLIEQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVIGKGNKER 177 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VPL + Y + P+ LN ++I + LF R + + F I+ G+ Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292 Query: 316 QTHP 319 Q HP Sbjct: 293 QHHP 296 >gi|330719126|ref|ZP_08313726.1| site-specific recombinase, phage integrase family protein [Leuconostoc fallax KCTC 3537] Length = 308 Score = 122 bits (306), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 88/292 (30%), Positives = 142/292 (48%), Gaps = 19/292 (6%) Query: 17 ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL----AFYTEEKITIQTIRQLSYTEIR 72 E Q + LE ER S T+++Y D +F+ FL F + K+ QT+ +IR Sbjct: 5 ELQLYRDYLEFERLYSAQTIKAYMIDIHEFVDFLKQNGGFTSYAKV--QTL------DIR 56 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 +++ + + ++ R +S ++ F ++L + ++ N+ K N LP E+ Sbjct: 57 VYLNDLYERSLARTTIARKISSLRMFYQFLVANHVLEDNPFENVALRKHQNHLPEFFYEE 116 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + L D + H W RN+A+L LLY G R++E ++L + + + ++G Sbjct: 117 EMKVLFDTA--YNQHTKLW--QRNAALLELLYATGARVAEIVNLRLPQLDFSKKLVLLRG 172 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQ 249 KGDK R VP + Y +L Q +F RG PL + Q Sbjct: 173 KGDKERYVPFGKFADHILQRYTQELRQELLTQYQQDHDFVFVNNRGAPLTTAGVSYILSQ 232 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 L + L H LRH+FATHLL++G D+R++Q +LGH LSTTQ+YT+V Sbjct: 233 LMKQSSLNGKIHPHMLRHTFATHLLNHGADMRTVQELLGHVNLSTTQVYTHV 284 >gi|52424578|ref|YP_087715.1| site-specific tyrosine recombinase XerC [Mannheimia succiniciproducens MBEL55E] gi|81387473|sp|Q65V80|XERC_MANSM RecName: Full=Tyrosine recombinase xerC gi|52306630|gb|AAU37130.1| XerC protein [Mannheimia succiniciproducens MBEL55E] Length = 295 Score = 122 bits (306), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 100/311 (32%), Positives = 158/311 (50%), Gaps = 32/311 (10%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 L++ N+L+N ER +S TL +Y+ RQ + E IQ RQ+S + +R Sbjct: 5 LQKYWNYLRN---ERQVSSYTLTNYQ---RQMDAVMKILQEN--DIQNWRQVSPSVVRFI 56 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 +++ + + ++SL LS ++ FL +L + + + + K+ LP+ +N +Q Sbjct: 57 LAQSKKSGLHEKSLALRLSALRQFLAFLVLQGELKVNPAIGISAPKQGKHLPKNINAEQL 116 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNIMDDQSTLRIQG 192 L+DN S E ID R+ A+L L+Y GLR+SE L+LT N + +R+ G Sbjct: 117 NKLLDN----NSKEP--IDLRDKAMLELMYSSGLRLSELQGLNLTSLNFRSRE--IRVLG 168 Query: 193 KGDKIRIVPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 KG+K RI+P ++ E+ + P D LF G ++ Q+ + Sbjct: 169 KGNKERILPFGRHASHSVQEWLKVRLLFNPKDD------ALFVSSLGNRMSNRSIQKRME 222 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 GL H LRHSFAT +L DLR++Q +LGH LSTTQIYT++N ++ Sbjct: 223 IWGVRQGLNSHLNPHKLRHSFATQMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH--- 279 Query: 309 WMMEIYDQTHP 319 + E+YDQ HP Sbjct: 280 -LAEVYDQAHP 289 >gi|283458210|ref|YP_003362828.1| integrase [Rothia mucilaginosa DY-18] gi|283134243|dbj|BAI65008.1| integrase [Rothia mucilaginosa DY-18] Length = 422 Score = 122 bits (306), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 91/304 (29%), Positives = 153/304 (50%), Gaps = 23/304 (7%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L E+ S+ T++SY D F ++A + ++ + + + IR ++ ++ Sbjct: 131 LRYEKHRSEETIRSYISDLEGFFGYMA-----RRGVRHLDSIDASLIREWLGSLHLRQAA 185 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 ++ R S +++F + ++ ++ + MR K+ + LP L+ +Q N LL Sbjct: 186 RSTVVRRGSTLRTFFTWAQEEELVHANPTRGMRTPKRESHLPPVLSREQM-----NQLLT 240 Query: 145 TSHETKWIDARNS------AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 T E + D R++ A++ +LY G+RISE L Q++ T+R+ GKG+K R Sbjct: 241 TLQERRAQDPRDARLLRLEAVVEVLYASGMRISELTGLDLQSVDRANKTVRVLGKGNKER 300 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 +VPL KA+ + P + Q LF G RG N + + +L R + Sbjct: 301 VVPLGTPALKALNRWVSYGRPQWIPEGSQGVTALFIGPRGGRANARQIREDLTRLLRTVE 360 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 ++ AH LRHS ATHL+ G D+RS+Q +LGH L+TTQIYT+V+ K + E Y Sbjct: 361 NTQASGAHVLRHSAATHLVDGGADIRSVQELLGHSSLATTQIYTHVSMKR----LAETYA 416 Query: 316 QTHP 319 + HP Sbjct: 417 RAHP 420 >gi|284033002|ref|YP_003382933.1| tyrosine recombinase XerD [Kribbella flavida DSM 17836] gi|283812295|gb|ADB34134.1| tyrosine recombinase XerD [Kribbella flavida DSM 17836] Length = 313 Score = 122 bits (306), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 92/309 (29%), Positives = 151/309 (48%), Gaps = 23/309 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +L +ERGL+ TL SY D R++ +LA I + +++ + F+ + R Sbjct: 11 YLDHLTVERGLAANTLASYRRDLRRYDEYLA-----GAGISALGRVTEAVVGDFLMRLRE 65 Query: 81 QKIGDR--------SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 GD S R++ ++ F K+ + +T ++ LP+AL+ Sbjct: 66 ---GDEHHPPLTASSAGRTVVAVRGFHKFCLREGLTVIDPAAAVKPPVPPQRLPKALSVD 122 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + +T + E + R++A+L LYG G RISEA+ L ++ + + ++G Sbjct: 123 E-VTRILAAAAGADAEPAVLATRDAALLEFLYGTGARISEAVGLDVDDVDLESGQVLLRG 181 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQL 250 KG K R+VP+ R+A+ Y DL + LF RG L+ +R+ Sbjct: 182 KGSKERVVPVGSYAREALSAYQVRGRPDLVARGRGTHALFLNARGGRLSRQSAWTVLRRA 241 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 + G+ + HTLRHSFATHLL G D+R +Q +LGH ++TTQ+YT V D + Sbjct: 242 AQRAGISKEISPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLVTV----DKL 297 Query: 311 MEIYDQTHP 319 E+Y +HP Sbjct: 298 REVYATSHP 306 >gi|300361600|ref|ZP_07057777.1| tyrosine recombinase XerC [Lactobacillus gasseri JV-V03] gi|300354219|gb|EFJ70090.1| tyrosine recombinase XerC [Lactobacillus gasseri JV-V03] Length = 307 Score = 122 bits (306), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 97/316 (30%), Positives = 152/316 (48%), Gaps = 18/316 (5%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L+K+ Q++L ER SK T+ SY D + F +E ++ ++ Sbjct: 7 KLIKQFQDYLN---YERNYSKNTVSSYLNDLDEAKQFF----KENGGFSGWDKVKSRDVE 59 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F+ TQ + R +S ++SF ++L KR++ + + LP+ EK Sbjct: 60 IFLQNLATQNRSRTTQARKMSSLRSFYRFLVKREVLENDPMQTISLRLGEKKLPQFFYEK 119 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + + D+++ H + RN A+ L Y G+R+SE SL I D + + G Sbjct: 120 EMRQVFDSLVGHDR-----LVVRNRAMFELFYATGMRLSEMASLKLDQIDFDLKIILVHG 174 Query: 193 KGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQL 250 KG+K R VP A+ EY D + P L N L +F RG+ L + ++Q+ Sbjct: 175 KGNKDRYVPFGKDALDALKEYRDDVRPALLGQNEDLGYVFLNNRGQKLTGRGIEYIMQQV 234 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ H LRHSFAT +L+NG DLRS+Q +LGH LSTTQIYT+V K+ + Sbjct: 235 FIKAGVGGKVHPHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKH----L 290 Query: 311 MEIYDQTHPSITQKDK 326 Y + P +KD+ Sbjct: 291 QADYQKFFPRKDKKDE 306 >gi|187779532|ref|ZP_02996005.1| hypothetical protein CLOSPO_03128 [Clostridium sporogenes ATCC 15579] gi|187773157|gb|EDU36959.1| hypothetical protein CLOSPO_03128 [Clostridium sporogenes ATCC 15579] Length = 291 Score = 122 bits (306), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 84/299 (28%), Positives = 159/299 (53%), Gaps = 17/299 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 ++++L+ ++ LSK TL++Y D +F F+ E+ +++ T+ I AF+ + Sbjct: 8 YIKDLQ-KKNLSKNTLEAYRRDVEKFSEFVKGREEKILSVDTV------TIMAFVQYLQR 60 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + S+ R++ I++F KYL K+ + +E L K ++P+ L+ ++ VD Sbjct: 61 EGRATSSIVRNIVSIRNFYKYLIKKNMVSEDPTLGYEIPKIERTIPKILSVEE----VDK 116 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 +L K + R+ A+L L+Y G++I+E L+L +I + ++ +G + RI+ Sbjct: 117 LLNSPDSSKKGL--RDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRERII 174 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 P+ K + Y ++ P N+ LF ++G + F + I+ + + Sbjct: 175 PIGSYAVKCLKNYLEVRPAINVYNLDY-LFLNLKGTQMTRQGFWKIIKFYAKEASIDKEI 233 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 ++TLRHSFA HLL NG D++S+Q +LGH L+ TQIY++++ K+ + E+Y HP Sbjct: 234 DSYTLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSK---IAEVYKNAHP 289 >gi|299142044|ref|ZP_07035178.1| tyrosine recombinase XerD [Prevotella oris C735] gi|298576506|gb|EFI48378.1| tyrosine recombinase XerD [Prevotella oris C735] Length = 307 Score = 122 bits (306), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 91/287 (31%), Positives = 154/287 (53%), Gaps = 14/287 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L+ L++ER S+ TL +Y D + +L Y + + T QL +++ F + Sbjct: 13 KSYLRYLKLERNYSQNTLDAYSHD----ITWLMDYCKREGLEMTALQLE--DLQHFAATL 66 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLK-KRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 +IG RS R LSGI+SF ++L I T+ L + + LP L+ + L Sbjct: 67 HEFQIGPRSQSRILSGIRSFYRFLLLDGYIETDPTEL-LESPALGQHLPEVLSTAEVDML 125 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 ++ L +K RN AI+ +L+ CGLR+SE ++L + D +R+ GKG K Sbjct: 126 EQSIDL-----SKPEGQRNRAIIEVLFSCGLRVSELVNLKLSQLYLDDGFIRVLGKGSKE 180 Query: 198 RIVPLLP-SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 R+VP+ P ++++ L + D ++ + +F RG L + I++ G+ Sbjct: 181 RLVPISPRAIKELQLWFTDRVHLNIKPGEEDFVFLNRRGHHLTRTMILIMIKRQAEEAGI 240 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + + HTLRHSFAT LL G DLR+IQ++LGH + TT+IYT++++ Sbjct: 241 KKTISPHTLRHSFATALLQGGADLRAIQAMLGHESIGTTEIYTHIDT 287 >gi|110644136|ref|YP_671866.1| site-specific tyrosine recombinase XerC [Escherichia coli 536] gi|123048654|sp|Q0TAR4|XERC_ECOL5 RecName: Full=Tyrosine recombinase xerC gi|110345728|gb|ABG71965.1| integrase/recombinase XerC [Escherichia coli 536] Length = 298 Score = 122 bits (306), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 91/307 (29%), Positives = 153/307 (49%), Gaps = 17/307 (5%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L + + +L+ L +ER LS +TL +Y+ RQ + F +E +Q+ +Q T +R Sbjct: 3 DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIIHFASEN--GLQSWQQCDVTMVR 57 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F + R + +G L LS ++SF +L + + + K LP+ ++ Sbjct: 58 NFAVRSRRKGLGAAGLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 L+D + + R+ A+L ++YG GLR+SE + L +++ + + + G Sbjct: 118 DMSRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 KG K R +P+ + I + DL DL + LF GK ++ Q+ + Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 GL H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ + Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285 Query: 313 IYDQTHP 319 +YD HP Sbjct: 286 VYDAAHP 292 >gi|314923700|gb|EFS87531.1| tyrosine recombinase XerD [Propionibacterium acnes HL001PA1] Length = 306 Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 95/311 (30%), Positives = 157/311 (50%), Gaps = 27/311 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L++L +ERGLS T+Q+Y D ++ +L I ++ +++ ++ F +R Sbjct: 10 EDYLRHLVVERGLSDNTVQAYRRDLLRYQEYLGSRG-----IGSLAEVTRVDVEEF--RR 62 Query: 79 RTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 IG S+ R + +++ ++ M +S LP+AL Q + Sbjct: 63 HLDHIGLAPASVTRCVVAVRNLHRFAVGSGQVQADVTAGMSPGTRSRRLPKALTMDQVES 122 Query: 137 LVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNI---MDDQS-TLRIQ 191 L+ + +T ++ R++A+L LLYG G R+SE +L +I +DD LR+ Sbjct: 123 LL------AAPDTSTVEGLRDAALLELLYGTGARVSEVCALDVDDIRRVLDDPDLGLRLI 176 Query: 192 GKGDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 GKGDK RIVPL KA+ + + N + L RG+ L+ IR+ Sbjct: 177 GKGDKERIVPLGSYAAKAVDAWLIRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAVIRR 236 Query: 250 LRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 GL + + H+LRHS+ATHLL G D+R +Q +LGH ++TTQIYT V + D Sbjct: 237 AGEAAGLDVEHLSPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYTLVTA----D 292 Query: 309 WMMEIYDQTHP 319 + E+Y +HP Sbjct: 293 HLREVYRSSHP 303 >gi|309775481|ref|ZP_07670483.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53] gi|308916777|gb|EFP62515.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53] Length = 323 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 94/309 (30%), Positives = 146/309 (47%), Gaps = 26/309 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q++L ++ + T+ SY+ D +++ ++L + Q + + +I++F+S+ Sbjct: 8 QDYLHYIQAVDQKALATIHSYQQDLQEYEVWLIGKHK-----QVMEDILPQDIQSFLSEL 62 Query: 79 RTQKIGDRSLKRS-----LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 + G+ KRS L+ I F +Y+ + T +++R KK LP N Sbjct: 63 EDGQKGEDGRKRSSVNHMLTSIHMFHRYITMQHPTILDPSIHLRGGKKEQQLPLYFNPHD 122 Query: 134 ALTLVDNVLLHTSHETKWIDARN---SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 L+D+ D R+ AIL LLYGCGLR+SE L + +Q LR+ Sbjct: 123 IERLLDSF---------GEDERSLYQKAILELLYGCGLRVSEVCELRLNQVHLEQGYLRV 173 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 GKGDK R+VP+ A+ Y +F RG L I+Q Sbjct: 174 IGKGDKERMVPMHKRCVLALRVYVTQIRPGWEKRKSTRVFINSRGNILTRQYVHTLIKQR 233 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 L L +AH+ RHSFATHLL G DLR +Q +LGH ++TTQIYT+V ++ + Sbjct: 234 LHMLNLDERLSAHSFRHSFATHLLDGGADLRVVQELLGHRDIATTQIYTHVQNRR----L 289 Query: 311 MEIYDQTHP 319 E + HP Sbjct: 290 KEAIESYHP 298 >gi|317125403|ref|YP_004099515.1| tyrosine recombinase XerC subunit [Intrasporangium calvum DSM 43043] gi|315589491|gb|ADU48788.1| tyrosine recombinase XerC subunit [Intrasporangium calvum DSM 43043] Length = 319 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 87/314 (27%), Positives = 156/314 (49%), Gaps = 14/314 (4%) Query: 7 PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66 PE E + + ++L ERG S+ T ++Y D F+ + + + +L Sbjct: 17 PEPAGLEAVL--SEFTRHLRSERGRSEHTTRAYVSDINHLFSFVVAHG-----LSDLGEL 69 Query: 67 SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKSNSL 125 ++R+++ + ++ R + ++FLK+ + +I T+ + L + ++S +L Sbjct: 70 RLADLRSWLGAQADGGAARSTIARRAAAARTFLKWASRSGRIETDPS-LRLVAPRRSRTL 128 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 P L +++A ++D + + I R+ A+L LLY G+R+ E +SL ++ + Sbjct: 129 PDVLKQREASAMLDVAAVRAD-DADPIHVRDRAVLELLYASGIRVGELVSLDLDDLDLRE 187 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245 T+R+ GKG K R+VP A+ E+ + LF G RG ++P + Sbjct: 188 RTVRVMGKGAKERVVPFGVPAASALQEWLAARRLLVGPRSGPALFLGRRGARVDPRQVRS 247 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + ++ +L H LRHS ATHLL G DLR +Q +LGH L+TTQIYT+V+ + Sbjct: 248 LVHEVLSHLPDAPDLGPHGLRHSAATHLLEGGADLRMVQEVLGHASLATTQIYTHVSVER 307 Query: 306 GGDWMMEIYDQTHP 319 + + Y+Q HP Sbjct: 308 ----LRKSYEQAHP 317 >gi|295108294|emb|CBL22247.1| tyrosine recombinase XerD subunit [Ruminococcus obeum A2-162] Length = 294 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 89/304 (29%), Positives = 161/304 (52%), Gaps = 20/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++++ L + SK T SYE D ++ + +L E+ +T + +++ T+++ +++K Sbjct: 6 EDFILYLHETKNTSKNTEVSYERDLKKLIRYLQ---EQDLT--SFSEVTCTDLQGYLNKI 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 +++ + ++ R+++ I++ YL K+ I E + K LP L+ ++ V Sbjct: 61 KSENLAASTISRNIASIRALYHYLLKKGIVAEDPTEVLHTPKIEKKLPEILSVEE----V 116 Query: 139 DNVLLHTSHET-KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 D +L T K I R++A++ LLY G+R+SE + L+ +I + Q + DK Sbjct: 117 DRLLKQPDIRTPKGI--RDNAMMELLYATGMRVSELIHLSTTDI-NLQMGYVVCHDSDKE 173 Query: 198 RIVPLLPSVRKAILEYYDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RI+P+ R AIL+Y + F + N + LF GK ++ F + ++ G Sbjct: 174 RIIPIGNVSRNAILQYMEHSRGFFTKDTN-ESALFTNCSGKSMSRQGFWKVLKGYAADAG 232 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + T HTLRHSFA H+L NG D++S+Q +LGH +S+TQIY +N M ++Y Sbjct: 233 IHRDITPHTLRHSFAAHMLQNGADVKSVQEMLGHADISSTQIYLGLNVSK----MRDVYM 288 Query: 316 QTHP 319 + HP Sbjct: 289 KAHP 292 >gi|326331272|ref|ZP_08197564.1| tyrosine recombinase XerD [Nocardioidaceae bacterium Broad-1] gi|325950905|gb|EGD42953.1| tyrosine recombinase XerD [Nocardioidaceae bacterium Broad-1] Length = 298 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 91/307 (29%), Positives = 146/307 (47%), Gaps = 19/307 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L +L +ERGL+ TL SY D R++ FLA + +T +S + F++ Sbjct: 2 RTYLDHLTVERGLAANTLSSYRRDLRRYAEFLAQQDVDDLT-----AVSEATVSGFLAHL 56 Query: 79 RT-----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 R + S R++ ++ F K+ + + +++ + LP+AL Sbjct: 57 REGSEEHPALSATSAARTVVAVRGFHKFAVADGLVEANPAGHVKPPRAEKRLPKALP--- 113 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L+ V+ +L + R+ A+L +LYG G RISEA+ L ++ ++GK Sbjct: 114 -LSDVEAILEAAGAPGTPLALRDRALLEVLYGTGARISEAVGLDVDDLDRVDHVALLRGK 172 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 G K RIVP+ +A+ Y DL + LF RG L+ + + Sbjct: 173 GGKERIVPVGSYAIEAVEAYLTRARPDLASARSGGALFLNARGGRLSRQSAWTVLTRAAE 232 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 G+ + HTLRHSFATHLL G D+R +Q +LGH ++TTQIYT V N + E Sbjct: 233 RAGIDKDVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVDN----LRE 288 Query: 313 IYDQTHP 319 ++ HP Sbjct: 289 VFATAHP 295 >gi|325124215|gb|ADY83738.1| site-specific tyrosine recombinase [Acinetobacter calcoaceticus PHEA-2] Length = 306 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 79/234 (33%), Positives = 129/234 (55%), Gaps = 9/234 (3%) Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 RS+ R LS ++ F K+L+++K+ +++ + + K +LP+ L+E+ L+ ++T Sbjct: 80 RSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVEALIQAPDINT 139 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 + + R+ A+ +LY CGLR+SE L+L + I Q LRI GKG+K R+VPL Sbjct: 140 A-----LGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRITGKGNKERLVPLGQF 194 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + + Y L + LF G ++ F I++ + + HTL Sbjct: 195 ACEWVERYLQDARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAELSPHTL 254 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 RH+FATHLL++G DLR +Q +LGH LSTTQIYT+V M +++++ HP Sbjct: 255 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR----MQQLHEKHHP 304 >gi|294637959|ref|ZP_06716226.1| tyrosine recombinase XerC [Edwardsiella tarda ATCC 23685] gi|291088891|gb|EFE21452.1| tyrosine recombinase XerC [Edwardsiella tarda ATCC 23685] Length = 303 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 94/300 (31%), Positives = 147/300 (49%), Gaps = 21/300 (7%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 LQ L +ER LS T+ +Y RQ +A E +T L +RA +++ R Q Sbjct: 16 LQMLRVERQLSPRTVDTYR---RQLAAIIALLQESGVT--DWLALDSARVRALVARSRRQ 70 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 + SL LS ++SFL + + + ++ LP+ L+ VD+V Sbjct: 71 GLEPASLALRLSALRSFLDWQVSCGALAANPAKGVAAPRQGRHLPKNLD-------VDDV 123 Query: 142 -LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 L E+ + R+ A+L L+YG GLR+SE + L +++ + + GKG K R + Sbjct: 124 NRLLAIDESDTLAVRDRAMLELMYGGGLRLSELVGLDCRHLDLATGEVWVLGKGSKERRL 183 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ R+A+ + L Q LF RG ++P Q+ + G+ Sbjct: 184 PI---GREAVRWVEKWLALRIALQPQDDALFISSRGGRISPRNVQKRFAEWGVKQGVTSH 240 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHSFATHLL + GDLR++Q +LGH LSTTQIYT+++ ++ + +YD HP Sbjct: 241 IHPHKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LANVYDAAHP 296 >gi|238787321|ref|ZP_04631120.1| Tyrosine recombinase xerD [Yersinia frederiksenii ATCC 33641] gi|238724583|gb|EEQ16224.1| Tyrosine recombinase xerD [Yersinia frederiksenii ATCC 33641] Length = 299 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 90/303 (29%), Positives = 154/303 (50%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ER L++ TL SY D +L + + + + ++++F+++R Sbjct: 10 EQFLDALWLERNLAENTLASYRLDLHALSGWLEHHGSDLLRAGS------QDLQSFLAER 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K+ + + + K LP+ L+E Q Sbjct: 64 IEGGYKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQV---- 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + LL++ + ++ R+ A+L +LY GLR+SE + LT ++ Q +R+ GKG+K R Sbjct: 120 -DALLNSPNVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKER 178 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL I Y + P+ +N LF R + + F I+ G+ Sbjct: 179 LVPLGEEAVYWIENYMEHGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGID 238 Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Q Sbjct: 239 SERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQQ 294 Query: 317 THP 319 HP Sbjct: 295 HHP 297 >gi|282853638|ref|ZP_06262975.1| tyrosine recombinase XerD [Propionibacterium acnes J139] gi|282583091|gb|EFB88471.1| tyrosine recombinase XerD [Propionibacterium acnes J139] gi|314967052|gb|EFT11151.1| tyrosine recombinase XerD [Propionibacterium acnes HL082PA2] gi|314983153|gb|EFT27245.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA3] gi|315092375|gb|EFT64351.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA4] gi|315103783|gb|EFT75759.1| tyrosine recombinase XerD [Propionibacterium acnes HL050PA2] gi|327327186|gb|EGE68962.1| tyrosine recombinase XerD [Propionibacterium acnes HL103PA1] Length = 306 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 95/311 (30%), Positives = 157/311 (50%), Gaps = 27/311 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L++L +ERGLS T+Q+Y D ++ +L I ++ +++ ++ F +R Sbjct: 10 EDYLRHLVVERGLSDNTVQAYRRDLLRYQEYLGSRG-----IGSLAEVTRVDVEEF--RR 62 Query: 79 RTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 IG S+ R + +++ ++ M +S LP+AL Q + Sbjct: 63 HLDHIGLAPASVTRCVVAVRNLHRFAVGSGQVQADVTAGMSPGTRSRRLPKALTMDQVES 122 Query: 137 LVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNI---MDDQS-TLRIQ 191 L+ + +T ++ R++A+L LLYG G R+SE +L +I +DD LR+ Sbjct: 123 LL------AAPDTSTVEGLRDAALLELLYGTGARVSEVCALDVDDIRRVLDDPDLGLRLI 176 Query: 192 GKGDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 GKGDK RIVPL KA+ + + N + L RG+ L+ IR+ Sbjct: 177 GKGDKERIVPLGSYAAKAVDAWLIRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAVIRR 236 Query: 250 LRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 GL + + H+LRHS+ATHLL G D+R +Q +LGH ++TTQIYT V + D Sbjct: 237 AGEAAGLDVEHLSPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYTLVTA----D 292 Query: 309 WMMEIYDQTHP 319 + E+Y +HP Sbjct: 293 HLREVYRSSHP 303 >gi|319639109|ref|ZP_07993866.1| tyrosine recombinase xerC [Neisseria mucosa C102] gi|317399687|gb|EFV80351.1| tyrosine recombinase xerC [Neisseria mucosa C102] Length = 298 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 86/300 (28%), Positives = 149/300 (49%), Gaps = 25/300 (8%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS--KRRTQK-IG 84 ++G S+ T+ +Y D + + L E + + R F++ K+ +QK + Sbjct: 20 QQGKSQHTVSAYRRDLSELMRLLPDNLENGLPTR----------RDFVAALKKLSQKGLS 69 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 + SL R LS + + +L + ++ NM+ + LP+AL ++ ++++L H Sbjct: 70 ESSLARKLSAWRQYCSWLVQIEVMESDPTFNMKAPRLPERLPKALPQEP----LNHILDH 125 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + + +D R+ A+ L+YG GLR+SE L +I+ D+ + + GKG K R VPL Sbjct: 126 APVDDE-LDVRDKAMFELMYGSGLRLSEIQGLNLNSIVLDEGWVSVNGKGGKQRQVPL-- 182 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 V K+I D + + LF G L Q+ ++ +G + H Sbjct: 183 -VAKSIAALRDYLAVRIAKEGEQALFTNKNGGRLGQRQIQKRLQAWAVRVGSASHISPHM 241 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 +RHS+ATHLL GD+R++Q +LGH LS TQ+YT ++ D + +YD+ HP +K Sbjct: 242 MRHSYATHLLQASGDIRAVQELLGHSNLSATQVYTKLDF----DHLARVYDEAHPRAKRK 297 >gi|331675279|ref|ZP_08376030.1| tyrosine recombinase XerC [Escherichia coli TA280] gi|331067565|gb|EGI38969.1| tyrosine recombinase XerC [Escherichia coli TA280] Length = 298 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 92/307 (29%), Positives = 153/307 (49%), Gaps = 17/307 (5%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L + + +L+ L +ER LS +TL +Y+ RQ + F +E +Q+ +Q T +R Sbjct: 3 DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIINFASEN--GLQSWQQCDVTMVR 57 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F + R + +G SL LS ++SF +L + + + K LP+ ++ Sbjct: 58 NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 L+D + + R+ A+L ++YG GLR+SE + L +++ + + + G Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 KG K R +P+ + I + DL DL + LF GK ++ Q+ Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAAWGI 229 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 GL H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ + Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285 Query: 313 IYDQTHP 319 +YD HP Sbjct: 286 VYDAAHP 292 >gi|239502060|ref|ZP_04661370.1| tyrosine recombinase XerD [Acinetobacter baumannii AB900] Length = 306 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 81/240 (33%), Positives = 131/240 (54%), Gaps = 11/240 (4%) Query: 82 KIGD--RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 K+G RS+ R LS ++ F K+L+++K+ +++ + + K +LP+ L+E+ L+ Sbjct: 74 KVGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVEALIQ 133 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + T+ + R+ A+ +LY CGLR+SE L+L + I Q LRI GKG+K R+ Sbjct: 134 APDITTA-----LGLRDRAMFEILYACGLRVSELLNLRLELINLKQGYLRITGKGNKERL 188 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 VPL + Y + L + LF G ++ F I++ + Sbjct: 189 VPLGQYACDWVERYLNEARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAE 248 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V M +++++ HP Sbjct: 249 LSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR----MQQLHEKHHP 304 >gi|329667430|gb|AEB93378.1| putative integrase/recombinase [Lactobacillus johnsonii DPC 6026] Length = 307 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 98/316 (31%), Positives = 149/316 (47%), Gaps = 18/316 (5%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L+K+ Q++L ER SK T+ SY D LI + E Q+ ++ Sbjct: 7 KLIKQFQDYLN---YERNYSKNTVNSYLND----LIEAKDFFRENGGFSGWDQVKSRDVE 59 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F+ TQ + R +S ++SF ++L KR++ + + LP+ EK Sbjct: 60 IFLQNLATQNRSRTTQARKMSSLRSFYRFLVKREVLENDPMQTISLRLGEKKLPQFFYEK 119 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + + D++ H + RN A+ L Y G+R+SE SL I D + + G Sbjct: 120 EMRQVFDSLAGHEK-----LVVRNRAMFELFYATGMRLSEMASLKLDQIDFDLKIILVHG 174 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLP-LFRGIRGKPLNPGVFQRYIRQL 250 KG+K R VP A+ EY D L N L +F RG+ L + ++Q+ Sbjct: 175 KGNKDRYVPFGKDAASALKEYCDESRLALLGKNEDLGYVFLNNRGQKLTGRGIEYIMQQV 234 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ H LRHSFAT +L+NG DLRS+Q +LGH LSTTQIYT+V K+ + Sbjct: 235 FIKAGVGGKVHPHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKH----L 290 Query: 311 MEIYDQTHPSITQKDK 326 Y + P +KD+ Sbjct: 291 QADYQKFFPRKDKKDE 306 >gi|229552209|ref|ZP_04440934.1| site-specific recombinase XerD [Lactobacillus rhamnosus LMS2-1] gi|229314431|gb|EEN80404.1| site-specific recombinase XerD [Lactobacillus rhamnosus LMS2-1] Length = 298 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 90/307 (29%), Positives = 149/307 (48%), Gaps = 20/307 (6%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 +K + + L +ER S T+ +Y D ++F FL + ++ +++ + Sbjct: 1 MKPLAAFQEYLTVERQYSPETVTAYLNDIQEFQAFL----KANGGFTDFSKVDDLDVQTY 56 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQ 133 ++ Q + S+ R +S ++SF +YL + + + N + LKK + LP+ E + Sbjct: 57 LTDLNKQALARTSIARKISSLRSFYRYLVRIDVV-KRNPFELVELKKQHHHLPQFFYEAE 115 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L V T +D RN A+L +LYG G+R+SE +LT + + L I GK Sbjct: 116 IQELFKTVEGETP-----LDQRNRALLEVLYGTGIRVSECANLTLNQVDFNTGLLLIHGK 170 Query: 194 GDKIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 G+K R VP ++A+ Y + D +F G+P+ + + Sbjct: 171 GNKDRYVPFGRYAQRALQTYLKDGRQTLMNKHDAQHRF---VFVNQYGRPITARGIEYIL 227 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 QL + L + H LRHSFATH+L +G DLR++Q +LGH LSTTQIYT+V + Sbjct: 228 DQLIKQTSLTANIHPHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLK 287 Query: 308 DWMMEIY 314 + M+ Y Sbjct: 288 NEYMKYY 294 >gi|108758883|ref|YP_632026.1| tyrosine recombinase XerD [Myxococcus xanthus DK 1622] gi|108462763|gb|ABF87948.1| tyrosine recombinase XerD [Myxococcus xanthus DK 1622] Length = 310 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 86/300 (28%), Positives = 140/300 (46%), Gaps = 15/300 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 ++ + ERGLS T+ +Y D I + F + + Q ++ A +S Sbjct: 8 FIAFIRAERGLSGKTVDAYAAD-----INVYFEDLRSRGVSDVTQARQEDVSAHLSALGK 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + +G RS R L+ ++ F ++L ++ + ++ + + LP L ++ Sbjct: 63 RGLGKRSQARHLAALRGFHRFLVAERMADKDPTEDLDTPRSARKLPSFLTLEEV-----E 117 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LL E R+ A+L +LY GLR+SE L ++ L +GKG K R+V Sbjct: 118 QLLAAPDERTSTGVRDKAMLEVLYATGLRVSELCGLGINDVQLTAGYLVAKGKGAKERLV 177 Query: 201 PLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 PL + + Y + P L LF RG F + +++ G+ Sbjct: 178 PLGSVAIEKVQAYLAESRPAVLGRRKSQALFVTPRGSGFTRQGFWKLLKRYALKAGILKP 237 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H LRHSFATHL+ G DLR++Q +LGH L+TTQIYT+VN+ + +YD+ HP Sbjct: 238 LSPHKLRHSFATHLVERGADLRAVQQMLGHADLATTQIYTHVNAAR----LRSVYDEFHP 293 >gi|212695398|ref|ZP_03303526.1| hypothetical protein BACDOR_04947 [Bacteroides dorei DSM 17855] gi|212662033|gb|EEB22607.1| hypothetical protein BACDOR_04947 [Bacteroides dorei DSM 17855] Length = 308 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 91/287 (31%), Positives = 141/287 (49%), Gaps = 20/287 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 + Q L++E+ LS T+ +Y D + L A+ T E I I +R + F + Sbjct: 14 YKQYLKLEKSLSDNTVDAYLTDLDKLL---AYLTLENINILDVR---LENLEDFSAGLHD 67 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 I RS R LSGI+SF ++L + + + LP + ++ L+ + Sbjct: 68 IGIHPRSQARILSGIRSFYRFLIMEDYLESDPTELLESPQTGFKLPEVMTVEEIDLLIGS 127 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + T RN AIL LY CGLR+SE +L + ++ ++++GKG K R+V Sbjct: 128 IDRGTKE-----GQRNRAILETLYSCGLRVSELCNLKLSELYFEEGFIKVEGKGSKQRLV 182 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-----GKPLNPGVFQRYIRQLRRYLG 255 P+ P K I Y+ D NL P F GK ++ + I++L +G Sbjct: 183 PISPRAIKEIRLYFT----DRNLMKIKPGFEDFVFISNFGKNISRIMVFHIIKELAERIG 238 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 L + HT RHSFATHLL G +LR+IQ +LGH + TT+IYT+++ Sbjct: 239 LKKKISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHID 285 >gi|153953866|ref|YP_001394631.1| hypothetical protein CKL_1241 [Clostridium kluyveri DSM 555] gi|146346747|gb|EDK33283.1| XerD [Clostridium kluyveri DSM 555] Length = 292 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 88/301 (29%), Positives = 155/301 (51%), Gaps = 20/301 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 + + LE ++ +SK TL +Y D +F F+ K ++++ I A++ + Sbjct: 8 YAEQLE-KKHMSKNTLDAYIRDINRFYNFI------KKREGNLKEVEVVSIMAYVQYLQK 60 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + S+ R++ +++F KYL + + E+ +L K +++P+ L VD Sbjct: 61 EGKAISSIVRNIVSLRNFYKYLMVKGVINENPLLYYEIPKVKHNIPKVLT-------VDE 113 Query: 141 V--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 V LL + T + R+ A+L ++Y G+++ E L+LT +I S +R + +K R Sbjct: 114 VDKLLDSPDSTTYKGIRDKAMLEIMYAAGMKVMELLTLTIYDIDLKFSYIRCKSLKNKER 173 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +VP+ + + Y D+ P LN+ LF +RG ++ F + ++ + + Sbjct: 174 LVPIGSVAVQYLKNYLDIRP-QLNIYNLDTLFLNLRGAAMSRQGFWKIVKYYAKESKIDK 232 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 A TLRHSFA HLL NG D++S+Q +LGH LS TQIY+ V KN + E+Y ++H Sbjct: 233 DINAFTLRHSFAVHLLQNGADIKSVQELLGHKDLSATQIYSAVLKKNK---IAEVYKKSH 289 Query: 319 P 319 P Sbjct: 290 P 290 >gi|302338071|ref|YP_003803277.1| integrase family protein [Spirochaeta smaragdinae DSM 11293] gi|301635256|gb|ADK80683.1| integrase family protein [Spirochaeta smaragdinae DSM 11293] Length = 313 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 96/332 (28%), Positives = 160/332 (48%), Gaps = 28/332 (8%) Query: 6 LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65 +PE E+ +L+ L R LS T+ +Y D +F F+ +E ++ Sbjct: 1 MPETEKSEIRSLVDTYLRYLVAVRTLSPRTVDAYGVDLDRFCRFV---EDEGCGLE---- 53 Query: 66 LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 LS + +R F+++ + + S R+LS I+ F +Y K+ + ++R + L Sbjct: 54 LSPSLVRRFVAELK-DALSPASCARALSSIRGFYRYAVKQGAAVSNPFASVRGKGRERRL 112 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 P L+E +A L+ + E +I R+ ++ LLY G R+SEA+ + +I + Sbjct: 113 PEVLSEVEASELL------SFSENGFIGVRDKLLMELLYSTGARVSEAVGIDMLDIDTKK 166 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPG 241 T+++ GKGD+ RI L P A+ Y + D +Q LF G+ L Sbjct: 167 RTVKLLGKGDRQRIAYLGPQAMSALAAYLPYRRERVASDKKDAVQ-ALFLNAHGERLTRR 225 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +R+ + L H RHSFATHLL G D+R++Q +LGH LSTT IYT+V Sbjct: 226 GAGFILRKHQERLASGKRLHPHLFRHSFATHLLDRGADIRTVQELLGHADLSTTGIYTHV 285 Query: 302 NSKNGGDWMMEIYDQTHP-----SITQKDKKN 328 + K + ++Y HP S+ +K++K+ Sbjct: 286 SLKR----LQDVYRNAHPHGSTGSVGKKEQKS 313 >gi|218706400|ref|YP_002413919.1| site-specific tyrosine recombinase XerD [Escherichia coli UMN026] gi|293406393|ref|ZP_06650319.1| xerD [Escherichia coli FVEC1412] gi|298382129|ref|ZP_06991726.1| tyrosine recombinase xerD [Escherichia coli FVEC1302] gi|300896210|ref|ZP_07114759.1| tyrosine recombinase XerD [Escherichia coli MS 198-1] gi|301027413|ref|ZP_07190750.1| tyrosine recombinase XerD [Escherichia coli MS 69-1] gi|218433497|emb|CAR14400.1| site-specific tyrosine recombinase [Escherichia coli UMN026] gi|291426399|gb|EFE99431.1| xerD [Escherichia coli FVEC1412] gi|298277269|gb|EFI18785.1| tyrosine recombinase xerD [Escherichia coli FVEC1302] gi|300359944|gb|EFJ75814.1| tyrosine recombinase XerD [Escherichia coli MS 198-1] gi|300394921|gb|EFJ78459.1| tyrosine recombinase XerD [Escherichia coli MS 69-1] Length = 298 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 92/304 (30%), Positives = 155/304 (50%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +E+ L++ TL +Y D + +L T Q+ +++A +++R Sbjct: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGSTLATAQS------DDLQALLAER 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K + ++ + K LP+ L+E Q L+ Sbjct: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L+ ++ R+ A+L +LY GLR+SE + LT +I Q +R+ GKG+K R Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VPL + Y + P+ LN ++I + LF R + + F I+ G+ Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292 Query: 316 QTHP 319 Q HP Sbjct: 293 QHHP 296 >gi|193076109|gb|ABO10716.2| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC 17978] Length = 306 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 81/240 (33%), Positives = 130/240 (54%), Gaps = 11/240 (4%) Query: 82 KIGD--RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 K+G RS+ R LS ++ F K+L+++K+ +++ + + K +LP+ L+E+ L+ Sbjct: 74 KVGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVEALIQ 133 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + T+ + R+ A+ +LY CGLR+SE L+L + I Q LRI GKG+K R+ Sbjct: 134 APDITTA-----LGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRITGKGNKERL 188 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 VPL + Y + L + LF G ++ F I+ + Sbjct: 189 VPLGQYACDWVERYLNEARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKHYALQANIQAE 248 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V M +++++ HP Sbjct: 249 LSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR----MQQLHEKHHP 304 >gi|169797492|ref|YP_001715285.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE] gi|213155694|ref|YP_002317739.1| tyrosine recombinase XerD [Acinetobacter baumannii AB0057] gi|215484928|ref|YP_002327167.1| tyrosine recombinase XerD [Acinetobacter baumannii AB307-0294] gi|260556384|ref|ZP_05828603.1| tyrosine recombinase XerD [Acinetobacter baumannii ATCC 19606] gi|301346533|ref|ZP_07227274.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB056] gi|301512500|ref|ZP_07237737.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB058] gi|301594843|ref|ZP_07239851.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB059] gi|332851492|ref|ZP_08433489.1| tyrosine recombinase XerD [Acinetobacter baumannii 6013150] gi|332866808|ref|ZP_08437212.1| tyrosine recombinase XerD [Acinetobacter baumannii 6013113] gi|169150419|emb|CAM88316.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE] gi|213054854|gb|ACJ39756.1| tyrosine recombinase XerD [Acinetobacter baumannii AB0057] gi|213986144|gb|ACJ56443.1| tyrosine recombinase XerD [Acinetobacter baumannii AB307-0294] gi|260410439|gb|EEX03738.1| tyrosine recombinase XerD [Acinetobacter baumannii ATCC 19606] gi|332729945|gb|EGJ61276.1| tyrosine recombinase XerD [Acinetobacter baumannii 6013150] gi|332734416|gb|EGJ65536.1| tyrosine recombinase XerD [Acinetobacter baumannii 6013113] Length = 306 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 81/240 (33%), Positives = 131/240 (54%), Gaps = 11/240 (4%) Query: 82 KIGD--RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 K+G RS+ R LS ++ F K+L+++K+ +++ + + K +LP+ L+E+ L+ Sbjct: 74 KVGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVEALIQ 133 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + T+ + R+ A+ +LY CGLR+SE L+L + I Q LRI GKG+K R+ Sbjct: 134 APDITTA-----LGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRITGKGNKERL 188 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 VPL + Y + L + LF G ++ F I++ + Sbjct: 189 VPLGQYACDWVERYLNEARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAE 248 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V M +++++ HP Sbjct: 249 LSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR----MQQLHEKHHP 304 >gi|325674273|ref|ZP_08153962.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707] gi|325554953|gb|EGD24626.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707] Length = 309 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/308 (27%), Positives = 145/308 (47%), Gaps = 17/308 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++L +L +ERG ++ TL SY D ++ FL E +R ++ T++ F+ Sbjct: 9 DSYLDHLAVERGAARNTLTSYRRDLDRYARFL-----EARGTDDVRSVTETDVSEFVVAL 63 Query: 79 R-------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131 R + S R+L ++ ++ +T+ ++ LP++L Sbjct: 64 RKGDPAEGVVALAPSSAARALIAVRGLHRFAAAEGVTSGDVARAVKPPTPGRRLPKSLPL 123 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 L +++ S + R+ A+L LLY G RISEA+ L ++ ++ ++ Sbjct: 124 DDVLAILEASGGDGSADNPRT-LRDRALLELLYSTGARISEAVGLDVDDLDTQSRSVLLR 182 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 GKG K R+VP+ AI Y L++ LF +RG L+ + + Sbjct: 183 GKGGKERVVPVGRPAITAIDNYLVRGRPALSVRGGPALFLNVRGGRLSRQSAWQVLHTAA 242 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 G+ ++ + HTLRHSFATHLL G D+R +Q +LGH ++TTQIYT V + Sbjct: 243 EKAGIAVAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVGA----LR 298 Query: 312 EIYDQTHP 319 E++ Q HP Sbjct: 299 EVWAQAHP 306 >gi|261250247|ref|ZP_05942823.1| site-specific recombinase XerD [Vibrio orientalis CIP 102891] gi|260939363|gb|EEX95349.1| site-specific recombinase XerD [Vibrio orientalis CIP 102891] Length = 302 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 91/305 (29%), Positives = 155/305 (50%), Gaps = 21/305 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF--YTEEKITIQTIRQLSYTEIRAFIS 76 + +L + +ERGLS+ TL SY D + L +++ Y + I++ ++ E +A++ Sbjct: 13 EQFLDAMWMERGLSENTLASYRTDLVKLLRWMSTNNYKLDFISLSGLQ-----EYQAWLV 67 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 ++ S R LS I+ +YL + K+ + + + K LP+ L+E+Q Sbjct: 68 DEGYKQT---SRARMLSAIRRLFQYLHREKVRGDDPSALLVSPKLPKRLPKDLSEEQV-- 122 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 + LL ++ R+ A+L LLY GLR++E +SLT +N+ Q +R+ GKG K Sbjct: 123 ---DALLDAPDPNDAMELRDKAMLELLYATGLRVTELVSLTMENVSLRQGVVRVTGKGGK 179 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 R+VP+ + I + +L +F R + + F I+ G Sbjct: 180 ERLVPMGENAVDWIETFLQQGRSELLGETTSDVVFPSKRARQMTRQTFWHRIKHYAVVAG 239 Query: 256 LPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 + + H LRH+FATHLL+ G DLR +Q +LGH LSTTQIYT+V ++ + +++ Sbjct: 240 IDTEQLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLH 295 Query: 315 DQTHP 319 + HP Sbjct: 296 SEHHP 300 >gi|257453686|ref|ZP_05618973.1| tyrosine recombinase XerC [Enhydrobacter aerosaccus SK60] gi|257448920|gb|EEV23876.1| tyrosine recombinase XerC [Enhydrobacter aerosaccus SK60] Length = 345 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 99/303 (32%), Positives = 154/303 (50%), Gaps = 19/303 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFL-IFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 WL L +R S T++SY RQ L FLA+ E+ + I + ++ I + Sbjct: 54 WLAELSNKR-YSAATIKSY----RQALQPFLAYCYEQHTELCHITRQQLSDF--LIRRLD 106 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 KI S + L+ ++ K+L +++ T + +R + LP L+ L+D Sbjct: 107 VDKISKSSSQYELTVLRQLYKWLIVQQLMTLNPTTTIRLKRAPRPLPTLLDIDVLSQLLD 166 Query: 140 NVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 SHE + WI R+ A+L LLYG GLR+ E + L +I Q LR+ GKG K R Sbjct: 167 QAAPEDSHEARLWI--RDKAMLELLYGSGLRVGELVGLNMSDIDKSQRLLRVLGKGGKTR 224 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIR-GKPLNPGVFQRYIRQLRRYLGL 256 IVP+ +A++ Y L L + Q P +F R G ++ Q I+ + G+ Sbjct: 225 IVPIGEKAWQALINY--LPHRSLWVEEQDPAVFVSERYGTRISTRTVQLRIKLQAKRAGV 282 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 H LRH FA+H+LS+ GDLR +Q +LGH +STTQIYT+++ + + ++YD+ Sbjct: 283 AQDLYPHLLRHCFASHILSDSGDLRGVQELLGHSDISTTQIYTHLDFGH----LSQVYDK 338 Query: 317 THP 319 HP Sbjct: 339 AHP 341 >gi|261343068|ref|ZP_05970926.1| tyrosine recombinase XerC [Enterobacter cancerogenus ATCC 35316] gi|288314633|gb|EFC53571.1| tyrosine recombinase XerC [Enterobacter cancerogenus ATCC 35316] Length = 300 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 90/299 (30%), Positives = 149/299 (49%), Gaps = 19/299 (6%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L+ L +ER LS +TL +Y+ RQ + E I +++ +Q +R F+ + R + Sbjct: 14 LRYLGVERQLSPVTLLNYQ---RQLDAIMQIADE--IGLKSWQQCDAATVRGFVVRSRKK 68 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 K+ SL LS ++SF +L + + + + K LP+ ++ L+D Sbjct: 69 KLSPASLALRLSALRSFFDWLVSQGVLKANPAKGIATPKAPRHLPKNIDVDDVNRLLDID 128 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 L + R+ A+L ++YG GLR+SE ++L +++ + + + GKG K R +P Sbjct: 129 L------NDPLAVRDRAMLEVMYGAGLRLSELVNLDLKHLDLESGEVWVMGKGSKERRLP 182 Query: 202 LLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 + + I + DL F N LF GK ++ Q+ + GL Sbjct: 183 IGRNAVSWIEHWLDLRGLFGAEEN---ALFLSKLGKRISARNVQKRFAEWGIKQGLNSHV 239 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ + +YD HP Sbjct: 240 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHP 294 >gi|296394928|ref|YP_003659812.1| tyrosine recombinase XerD [Segniliparus rotundus DSM 44985] gi|296182075|gb|ADG98981.1| tyrosine recombinase XerD [Segniliparus rotundus DSM 44985] Length = 306 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 89/317 (28%), Positives = 145/317 (45%), Gaps = 34/317 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +L +L +ERG SK T SY D ++ FL + ++ + Q++ ++ F++ Sbjct: 6 QQYLDHLAVERGASKHTTASYRRDLGRYADFL-----RQRSVADLAQVTSAQVAEFLAWS 60 Query: 79 RTQK---IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 R + S R LS ++ ++ + + ++ + LP+AL Q + Sbjct: 61 RDPAGMGLAQSSAARGLSAVRGLHRFAVLEGMVAQDVAHGVKPPQPGRRLPKALPVDQVI 120 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 +++ + + R+ A+L L+Y G R+SEA+ L ++ + R+ GKGD Sbjct: 121 AILEASGIADAESDVPRALRDQALLELMYCTGCRVSEAVGLNLADVDVPSRSARVLGKGD 180 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF-----QRYIRQ- 249 K R+VPL + A+ Y L P F R +F R+ RQ Sbjct: 181 KERLVPLGSAALAAVEAY---------LVRGRPAFLAQRAGKATNALFLNARGARFSRQS 231 Query: 250 ----LRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 LR G+ + HTLRHS ATHLL G D+R +Q +LGH + TTQIYT V+ Sbjct: 232 AWASLRHAAAKAGVQAEISPHTLRHSCATHLLEGGADVRVVQELLGHASVVTTQIYTMVS 291 Query: 303 SKNGGDWMMEIYDQTHP 319 + + E+Y HP Sbjct: 292 ATT----LREVYATAHP 304 >gi|168467636|ref|ZP_02701473.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195629975|gb|EDX48635.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 300 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 91/298 (30%), Positives = 149/298 (50%), Gaps = 17/298 (5%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L+ L +ER LS +TLQ+Y+ RQ +A E +++ +Q +R+F + R + Sbjct: 14 LRYLGVERQLSPITLQNYQ---RQLDAIIALAGE--TGLKSWQQCDAAIVRSFAVRSRRK 68 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 +G SL LS ++SF +L + + + K LP+ ++ L+D Sbjct: 69 GLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDID 128 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 L + R+ A+L ++YG GLR+SE + L +++ D + + GKG K R +P Sbjct: 129 L------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLP 182 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 + + I + DL L + + LF GK ++ Q+ + GL Sbjct: 183 IGRNAVTWIEHWLDLR--GLFASDEEALFLSKLGKRISVRNVQKRFAEWGIKQGLNSHVH 240 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ + +YD HP Sbjct: 241 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHP 294 >gi|311693141|gb|ADP96014.1| site-specific tyrosine recombinase XerC [marine bacterium HP15] Length = 310 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 88/312 (28%), Positives = 152/312 (48%), Gaps = 26/312 (8%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA---FYTEEKITIQTIRQLSYT 69 EL ++++L E+ S T SY D + +L F +++T +R+ Sbjct: 4 ELTGPLAEFIRHLASEKRHSPRTCDSYHRDLLRLADWLGRSGFVAWQRVTNHDLRR---- 59 Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 +++ + + RS+ R LS + F ++L + K+ +++ L++R K LPR Sbjct: 60 ----YVATLSREGLSGRSIARHLSATRRFYQFLLREKLASDNPALDIRAPKSGRRLPRVA 115 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 + Q L+D ++ R+ + L+Y GLR++E SL + +R Sbjct: 116 DVDQLNHLLDG------QPDDPLEVRDLCMFELMYSSGLRLAELASLDLDTVDVRSGEVR 169 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYI 247 + GKG K R LLP RKAI P+ L + + LF RG+ L+ Q + Sbjct: 170 VMGKGGKER---LLPVGRKAIAAIQAWVPYRAALANDGEAALFVSQRGERLSHRSIQARL 226 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 + G H LRHSFA+H+L + GDLR++Q +LGH ++TTQ+YT+++ ++ Sbjct: 227 SRWGISRGADQKLHPHLLRHSFASHMLESSGDLRAVQELLGHADIATTQVYTHLDFQH-- 284 Query: 308 DWMMEIYDQTHP 319 + +YDQ+HP Sbjct: 285 --LARVYDQSHP 294 >gi|193068085|ref|ZP_03049050.1| tyrosine recombinase XerC [Escherichia coli E110019] gi|192958705|gb|EDV89143.1| tyrosine recombinase XerC [Escherichia coli E110019] Length = 298 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 92/307 (29%), Positives = 154/307 (50%), Gaps = 17/307 (5%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L + + +L+ L +ER LS +TL +Y+ RQ + F +E +Q+ +Q T +R Sbjct: 3 DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIINFASEN--GLQSWQQCDVTMVR 57 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F + R + +G SL LS ++SF +L + + + K LP+ ++ Sbjct: 58 NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 L+D + + R+ A+L ++YG GLR+SE + L +++ + + + G Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGTGLRLSELVGLDIKHLDLESGEVWVMG 171 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 KG K R +P+ + I + DL DL + LF GK ++ Q+ + Sbjct: 172 KGCKERRLPIGRNAVAWIEHWLDL--RDLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 GL H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ + Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285 Query: 313 IYDQTHP 319 +YD HP Sbjct: 286 VYDAAHP 292 >gi|288573040|ref|ZP_06391397.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568781|gb|EFC90338.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 263 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/276 (30%), Positives = 139/276 (50%), Gaps = 22/276 (7%) Query: 45 QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK 104 QF FL E + + ++ EIRAF+ S+ R LS IKS +KYL + Sbjct: 3 QFAEFL-----ETQGVSDVSDIATGEIRAFVRSLSGYGFAPASVGRKLSAIKSLMKYLFE 57 Query: 105 RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLY 164 ++ + +R ++S+ LPRA++ +Q ++D +++ RN A++ LLY Sbjct: 58 ERVIEKDPSGRVRGPRRSDRLPRAMSVEQVSRMID-----CAYDDDEQGLRNGALIELLY 112 Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNL 223 GCGLR++E +S+ +++ ++ L++ GKG K R VP ++A+ L P D + Sbjct: 113 GCGLRVAEVVSVRWEDVEIEERWLKVMGKGSKERAVPFGSMAQRALTGLRALSMPGDEYV 172 Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283 F G + L R + G+ T H+LRHSFATHLL G LR + Sbjct: 173 ------FPGKKRGCLTVRTVHRVVVAAAAKAGVN-GVTPHSLRHSFATHLLEGGASLRVV 225 Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 Q +LGH L+TTQ Y + +++ + + Y+ HP Sbjct: 226 QELLGHEHLTTTQRYLRITAQH----LKKSYESAHP 257 >gi|299137336|ref|ZP_07030518.1| integrase family protein [Acidobacterium sp. MP5ACTX8] gi|298600741|gb|EFI56897.1| integrase family protein [Acidobacterium sp. MP5ACTX8] Length = 320 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 100/318 (31%), Positives = 150/318 (47%), Gaps = 28/318 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L + ERG S+ TL++Y + R F FL E I R + +T IRA+++ Sbjct: 11 ESFLAMMRDERGASEHTLRAYSREVRGFADFLGELLGEDADI---RSVEHTHIRAYLAVL 67 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + S R+L+ ++S+ K+L K N +L + LP+ L + + Sbjct: 68 YDKGLTKASAARALAAVRSWFKWLAKSGFVEA----NPASLVSTPKLPKHLPRVPGMEEL 123 Query: 139 DNVLLHTSHETKWIDARNSA--------ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 + VL S TK D +A I LLYGCG+R SE + L ++I +R+ Sbjct: 124 NRVLNSMSAGTKGEDGEEAATWPERDRVIFELLYGCGIRNSELVGLNLESIHWHDDAIRV 183 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG--------IRGKP-LNPG 241 GKG K R+VPL AI Y L + L +RG L Sbjct: 184 FGKGKKERLVPLGDEAAAAIRAYLPQRQARLEAAGKAKLVHDGALLMNLRMRGACRLTTR 243 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 R ++++ GL HTLRH+F TH+L G DLR+IQ +LGH RLSTTQ YT + Sbjct: 244 SVGRIVKRIALSRGLAADVHPHTLRHAFGTHMLEEGADLRAIQEMLGHERLSTTQRYTQL 303 Query: 302 NSKNGGDWMMEIYDQTHP 319 + +Y++THP Sbjct: 304 TVGQ----VQRVYEETHP 317 >gi|219854481|ref|YP_002471603.1| hypothetical protein CKR_1138 [Clostridium kluyveri NBRC 12016] gi|219568205|dbj|BAH06189.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 295 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 88/301 (29%), Positives = 155/301 (51%), Gaps = 20/301 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 + + LE ++ +SK TL +Y D +F F+ K ++++ I A++ + Sbjct: 11 YAEQLE-KKHMSKNTLDAYIRDINRFYNFI------KKREGNLKEVEVVSIMAYVQYLQK 63 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + S+ R++ +++F KYL + + E+ +L K +++P+ L VD Sbjct: 64 EGKAISSIVRNIVSLRNFYKYLMVKGVINENPLLYYEIPKVKHNIPKVLT-------VDE 116 Query: 141 V--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 V LL + T + R+ A+L ++Y G+++ E L+LT +I S +R + +K R Sbjct: 117 VDKLLDSPDSTTYKGIRDKAMLEIMYAAGMKVMELLTLTIYDIDLKFSYIRCKSLKNKER 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +VP+ + + Y D+ P LN+ LF +RG ++ F + ++ + + Sbjct: 177 LVPIGSVAVQYLKNYLDIRP-QLNIYNLDTLFLNLRGAAMSRQGFWKIVKYYAKESKIDK 235 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 A TLRHSFA HLL NG D++S+Q +LGH LS TQIY+ V KN + E+Y ++H Sbjct: 236 DINAFTLRHSFAVHLLQNGADIKSVQELLGHKDLSATQIYSAVLKKNK---IAEVYKKSH 292 Query: 319 P 319 P Sbjct: 293 P 293 >gi|196230590|ref|ZP_03129452.1| integrase family protein [Chthoniobacter flavus Ellin428] gi|196225520|gb|EDY20028.1| integrase family protein [Chthoniobacter flavus Ellin428] Length = 315 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 99/325 (30%), Positives = 164/325 (50%), Gaps = 42/325 (12%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY----------------TEEKITIQT 62 ++++ L ERGLS ++Y+ TR L A + EE+ T+ Sbjct: 6 EDFILYLATERGLS----ENYQLSTRLSLEGFARWLEKRNAGKEAESKDPLGEEEETLPE 61 Query: 63 IR--QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 + ++++ +I +++ ++ + S+K + +K F ++L RK E ++ + L Sbjct: 62 VAPGEVTHQQITDYLAHKKRLGLSAASIKLIVVALKIFFRWLHARK-RIERDVAEVLPLP 120 Query: 121 KSNS-LPRALNEKQALTLVDNVLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALS 175 ++ LP +NE Q VD +L S IDA R+ A+L LLY GLR+SE ++ Sbjct: 121 RTERYLPETMNELQ----VDRLLEGIS-----IDAPRGLRDRALLELLYASGLRVSELVN 171 Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIR 234 +N+ D +R+ GKG+K+R+VP+ AI Y + P + +F R Sbjct: 172 ARLENLDLDARIIRVTGKGNKMRLVPVGQKACDAIRAYLEKERPEMVGKKTGSEVFLSSR 231 Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 G L + ++ + GL ++ H LRHSFATHLLSNG DLR IQ +LGH +ST Sbjct: 232 GTKLTTVRIWQIVKACAKNAGLDINVYPHLLRHSFATHLLSNGADLRIIQEMLGHADIST 291 Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHP 319 TQIYT+V+ + + ++ + HP Sbjct: 292 TQIYTHVDQQR----LKAVHHRFHP 312 >gi|237711564|ref|ZP_04542045.1| integrase [Bacteroides sp. 9_1_42FAA] gi|237725982|ref|ZP_04556463.1| integrase [Bacteroides sp. D4] gi|265752992|ref|ZP_06088561.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_33FAA] gi|229435790|gb|EEO45867.1| integrase [Bacteroides dorei 5_1_36/D4] gi|229454259|gb|EEO59980.1| integrase [Bacteroides sp. 9_1_42FAA] gi|263236178|gb|EEZ21673.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_33FAA] Length = 308 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 91/287 (31%), Positives = 141/287 (49%), Gaps = 20/287 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 + Q L++E+ LS T+ +Y D + L A+ T E I I +R + F + Sbjct: 14 YRQYLKLEKSLSDNTVDAYLTDLDKLL---AYLTLENINILDVR---LENLEDFSAGLHD 67 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 I RS R LSGI+SF ++L + + + LP + ++ L+ + Sbjct: 68 IGIHPRSQARILSGIRSFYRFLIMEDYLESDPTELLESPQTGFKLPEVMTVEEIDLLIGS 127 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + T RN AIL LY CGLR+SE +L + ++ ++++GKG K R+V Sbjct: 128 IDRGTKE-----GQRNRAILETLYSCGLRVSELCNLKLSELYFEEGFIKVEGKGSKQRLV 182 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-----GKPLNPGVFQRYIRQLRRYLG 255 P+ P K I Y+ D NL P F GK ++ + I++L +G Sbjct: 183 PISPRAIKEIRLYFT----DRNLMKIKPGFEDFVFISNFGKNISRIMVFHIIKELAERIG 238 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 L + HT RHSFATHLL G +LR+IQ +LGH + TT+IYT+++ Sbjct: 239 LKKKISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHID 285 >gi|224824183|ref|ZP_03697291.1| tyrosine recombinase XerC [Lutiella nitroferrum 2002] gi|224603602|gb|EEG09777.1| tyrosine recombinase XerC [Lutiella nitroferrum 2002] Length = 323 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 94/316 (29%), Positives = 152/316 (48%), Gaps = 22/316 (6%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 ++P S+E + + Q+L++ G S T +Y D + +T Q I Sbjct: 15 QSVPSSTSWE--QRIAGYDQSLQLA-GKSPHTRSAYRRDLQALAALQGAQDPATLTAQQI 71 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 R L+ + A IG RSL R LS + F +L +++ + +R K Sbjct: 72 R-LAVARLHA------KGHIG-RSLARMLSAWRGFFDWLIEQEKLPANPCHGIRPPKSPK 123 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 +LP+AL L+D + + R+ A+ LLY CGLR+SE L ++ Sbjct: 124 TLPKALPVDATSALLDAPI----DPEDDLALRDQAMFELLYSCGLRLSELTGLDLADLDL 179 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 + L GKG+K RI+P+ R+A+ + + P +F G G+ L+ Sbjct: 180 GEGLLTAHGKGNKTRILPIGRQARQALERWLAIRPSQPGEGA---VFTGKSGRRLSGRQV 236 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 ++ + Q + G H LRHSFA+HLL + GDLR++Q +LGH LSTTQIYT+++ Sbjct: 237 EKRLEQWAQRHGSDRHVHPHMLRHSFASHLLQSSGDLRAVQELLGHANLSTTQIYTSLDF 296 Query: 304 KNGGDWMMEIYDQTHP 319 ++ + ++YD THP Sbjct: 297 QH----LAKVYDATHP 308 >gi|313771918|gb|EFS37884.1| tyrosine recombinase XerD [Propionibacterium acnes HL074PA1] Length = 306 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 95/311 (30%), Positives = 158/311 (50%), Gaps = 27/311 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L++L +ERGLS T+Q+Y D ++ +L I ++ +++ ++ F +R Sbjct: 10 EDYLRHLVVERGLSDNTVQAYRRDLLRYQEYLGSRG-----IGSLAEVTRVDVEEF--RR 62 Query: 79 RTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 IG S+ R + +++ ++ M +S LP+AL+ Q + Sbjct: 63 HLDHIGLAPASVTRCVVAVRNLHRFAVGSGQLQADVTAGMSPGTRSRRLPKALSMDQVES 122 Query: 137 LVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNI---MDDQS-TLRIQ 191 L+ + +T ++ R++A+L LLYG G R+SE +L +I +DD LR+ Sbjct: 123 LL------AAPDTSTVEGLRDAALLELLYGTGARVSEVCALDVDDIRPVLDDPDLGLRLI 176 Query: 192 GKGDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 GKGDK RIVPL KA+ + + N + L RG+ L+ IR+ Sbjct: 177 GKGDKERIVPLGSYAAKAVDAWLIRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAVIRR 236 Query: 250 LRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 GL + + H+LRHS+ATHLL G D+R +Q +LGH ++TTQIYT V + D Sbjct: 237 AGEAAGLDVEHLSPHSLRHSYATHLLDGGADIRVVQELLGHSSVTTTQIYTLVTA----D 292 Query: 309 WMMEIYDQTHP 319 + E+Y +HP Sbjct: 293 HLREVYRSSHP 303 >gi|283852933|ref|ZP_06370193.1| tyrosine recombinase XerD [Desulfovibrio sp. FW1012B] gi|283571691|gb|EFC19691.1| tyrosine recombinase XerD [Desulfovibrio sp. FW1012B] Length = 309 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 89/301 (29%), Positives = 144/301 (47%), Gaps = 20/301 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE--EKITIQTIRQLSYTEIRAFISKR 78 +L++L + +GL++ ++ +Y D FLIFL + E +T T+ ++ Sbjct: 19 YLEHLIVAKGLAEHSIAAYSTDITSFLIFLNSHAAALETVTDDTLFL--------YLMHL 70 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 RT+ + RSL R LS ++ F + K ES + N K LP L+ + L+ Sbjct: 71 RTRGLQSRSLARHLSALRGFFAFAAAEKWLPESPAALIENPKLPRLLPDVLSREDVARLL 130 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D T + R+ +L LLY GLR+SE + LT + LR+ GKG K R Sbjct: 131 DAPDTATP-----LGYRDRTMLELLYAAGLRVSELVGLTLGDYDAQAGLLRVFGKGAKER 185 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 + P+ R+ + Y + Q +F G+ L+ + I+ G+ Sbjct: 186 LTPIHALAREFLSTYILTMRGAFHPREQF-IFLNRSGQGLSRQAVWKKIKAHALAAGVST 244 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + H+LRHSFATHLL G DLR++Q +LGH +S T+IYT+V + ++ ++ H Sbjct: 245 RISPHSLRHSFATHLLEGGADLRTVQMLLGHADISATEIYTHVQAGR----LLAVHRAHH 300 Query: 319 P 319 P Sbjct: 301 P 301 >gi|198244691|ref|YP_002217878.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205354490|ref|YP_002228291.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859151|ref|YP_002245802.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|197939207|gb|ACH76540.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205274271|emb|CAR39290.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206710954|emb|CAR35322.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326625666|gb|EGE32011.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629624|gb|EGE35967.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 300 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 91/311 (29%), Positives = 154/311 (49%), Gaps = 17/311 (5%) Query: 9 IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68 + L ++ +L+ L +ER LS +T+Q+Y+ RQ +A E +++ +Q Sbjct: 1 MTDVALSQDVSRFLRYLGVERQLSPITVQNYQ---RQLDAIIALAGE--TGLKSWQQCDA 55 Query: 69 TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 +R+F + R + +G SL LS ++SF +L + + + K LP+ Sbjct: 56 AIVRSFAVRSRRKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKN 115 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 ++ L+D L + R+ A+L ++YG GLR+SE + L +++ D + Sbjct: 116 IDVDDVNRLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEV 169 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 + GKG K R +P+ + I + DL L + + LF GK ++ Q+ Sbjct: 170 WVMGKGSKERRLPIGRNAVTWIEHWLDLR--GLFASDEEALFLSKLGKRISARNVQKRFA 227 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 + GL H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ Sbjct: 228 EWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH--- 284 Query: 309 WMMEIYDQTHP 319 + +YD HP Sbjct: 285 -LASVYDAAHP 294 >gi|317046395|ref|YP_004114043.1| tyrosine recombinase XerC [Pantoea sp. At-9b] gi|316948012|gb|ADU67487.1| tyrosine recombinase XerC [Pantoea sp. At-9b] Length = 302 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 91/307 (29%), Positives = 154/307 (50%), Gaps = 19/307 (6%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 LL + +L+ L++ER LS LT Q+Y RQ + E KIT T QL ++R Sbjct: 7 LLPAVEGFLRYLKVERQLSPLTQQNY---ARQLQAIITMADEMKITAWT--QLEPAQVRN 61 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 ++ R +G SL LS ++SFL + + + + + + + + LP+ ++ + Sbjct: 62 IAARSRRAGLGASSLALRLSALRSFLDWQVSQDMLSGNPAKGIATPRNARHLPKNMDVDE 121 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L++ L + R+ A+L +YG GLR+SE +++ +++ + + + GK Sbjct: 122 VNQLLEIDL------NDPLAVRDRAMLETMYGGGLRLSELVNMDLRHLDLEAGEVWVLGK 175 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRR 252 G K R VP+ + A+ P + Q +F RG ++ Q+ + Sbjct: 176 GSKERRVPIGGT---AVTWLQHWLPLRASFAPQDDAVFVSSRGSRISARNVQKRFAEWGI 232 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 G+ H LRHSFATHLL + GDLR++Q +LGH LSTTQIYT+++ ++ + Sbjct: 233 KQGVASHIHPHKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LAS 288 Query: 313 IYDQTHP 319 +YD HP Sbjct: 289 VYDSAHP 295 >gi|256824962|ref|YP_003148922.1| site-specific recombinase XerD [Kytococcus sedentarius DSM 20547] gi|256688355|gb|ACV06157.1| site-specific recombinase XerD [Kytococcus sedentarius DSM 20547] Length = 336 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 97/350 (27%), Positives = 167/350 (47%), Gaps = 65/350 (18%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 LL+E + + +L +ERG S T+++Y D L LA + E + RQ++ +++R+ Sbjct: 6 LLREVEGFADHLLLERGRSPHTVRAYTAD----LTALAEHLEAAGATE-WRQVTLSDLRS 60 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSLPRAL 129 F ++R + +L R + ++F ++ + TE +++ + + + LP L Sbjct: 61 FAARRAAAGLARSTLARGTASQRTFFGWM----VATERLVVDPSARLVSPRVEKRLPAVL 116 Query: 130 NEKQALTLV--------------------------------------DNVLLHTSHETKW 151 +QA LV D V L T Sbjct: 117 RAEQAAQLVEGGGTRPEPRATGGAGDPGGDTQTDTDTDTDAAPGTEADPVSLAT------ 170 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL-LPSVRKAI 210 D R+ A+L LLY G+R+ E +SL + T+R+ GKG K R+VP +P++R A+ Sbjct: 171 -DLRDRAVLELLYATGIRVGELVSLDTGAVSLQDHTVRVWGKGSKERVVPFGVPALR-AL 228 Query: 211 LEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 E+ + P L LF G+RG ++P +R + + + + H LRHS Sbjct: 229 EEWVHQGRPELLGARSGEALFLGVRGGRIDPREVRRVVHRAAQRVEGAADIGPHGLRHSA 288 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 ATH++ G D+RS+Q +LGH L+TTQ+YT+V+ + + E +D++HP Sbjct: 289 ATHMVDAGADIRSVQELLGHASLATTQVYTHVSVER----LREAFDRSHP 334 >gi|146281579|ref|YP_001171732.1| site-specific tyrosine recombinase XerD [Pseudomonas stutzeri A1501] gi|145569784|gb|ABP78890.1| integrase/recombinase XerD [Pseudomonas stutzeri A1501] Length = 298 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 95/307 (30%), Positives = 145/307 (47%), Gaps = 30/307 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L +E+GL+ + ++Y D F +L E + + I ++ R Sbjct: 12 YLDALWLEKGLADNSREAYRNDLASFNGWL---QERGVRLAAA---GREVILDHLAWRLN 65 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 RS R LSG++ F +YL + + L + + LP+AL+E Sbjct: 66 NGYKARSTARFLSGLRGFYRYLLREGEISLDPTLRVDLPRLGRPLPKALSEADV-----E 120 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LL + R+ A+L +LY CGLR++E +SLT + + Q LR GKG+K R+V Sbjct: 121 ALLAAPDTGDPLGLRDRAMLEVLYACGLRVTELISLTLEQVSMRQGVLRTFGKGNKERLV 180 Query: 201 PLLPSV--------RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 PL R A + P D+ LF RG+ + F I+ R Sbjct: 181 PLGEEALHWLQRYQRDARDQLLAGRPSDV-------LFPSQRGEQMTRQTFWHRIKLHAR 233 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 G+ + HTLRH+FATHLL++G DLR++Q +LGH LSTTQIYT++ + E Sbjct: 234 GAGIATGISPHTLRHAFATHLLNHGADLRTVQMLLGHSDLSTTQIYTHIARAR----LQE 289 Query: 313 IYDQTHP 319 ++ HP Sbjct: 290 LHATHHP 296 >gi|262376987|ref|ZP_06070213.1| tyrosine recombinase XerD [Acinetobacter lwoffii SH145] gi|262308025|gb|EEY89162.1| tyrosine recombinase XerD [Acinetobacter lwoffii SH145] Length = 305 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/239 (32%), Positives = 128/239 (53%), Gaps = 9/239 (3%) Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q+ RS+ R LS ++SF K+L+++K+ +++ + + K +LP+ L+E Sbjct: 74 QQKSPRSIARCLSALRSFYKFLREQKLRSDNPVAAHKTPKLGRALPKDLSEADV-----E 128 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 L+H + R+ A+ +LY CGLR++E ++L + I Q LRI GKG+K R++ Sbjct: 129 ALIHAPDINTALGLRDRAMFEVLYACGLRVTELINLRLELINLKQGYLRIVGKGNKERLI 188 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 P+ + + +Y + L LF G ++ F I++ G+ Sbjct: 189 PMGQMACEWVEKYLNEARPQLYKTSTDYLFLTQHGGIMSRQNFWYAIKRYALQAGIQSEL 248 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V M +++ HP Sbjct: 249 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR----MQQLHATHHP 303 >gi|85059971|ref|YP_455673.1| site-specific tyrosine recombinase XerD [Sodalis glossinidius str. 'morsitans'] gi|84780491|dbj|BAE75268.1| phage integrase [Sodalis glossinidius str. 'morsitans'] Length = 299 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 97/307 (31%), Positives = 147/307 (47%), Gaps = 25/307 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L +L +ER L++ TL SY D + +L + + S +++AF++ R Sbjct: 10 EQFLDSLWLERNLAENTLASYRLDLQALSAWLQSQQRDSLNA------SSADLQAFLADR 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS + F +YL + K + K LP+ L+E Q Sbjct: 64 LDHGYKATSSARLLSATRRFFQYLYREKRRGNDPSAGISAPKLPQRLPKDLSEAQV---- 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL ++ R+ A+L +LY GLR+SE + LT ++ Q +R+ GKGDK R Sbjct: 120 -GDLLAAPAIADPVELRDKAMLEVLYATGLRVSELVGLTLSDVSLRQGVVRVIGKGDKER 178 Query: 199 IVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 +VPL I EYY +L+I LF R + + F I+ Sbjct: 179 LVPLGEEAVYWI-EYYLEHGRPALTHGQSLDI---LFPSNRSRKMTRQTFWHRIKHYAIL 234 Query: 254 LGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 G+ + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + Sbjct: 235 AGIDSERLSPHVLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVATER----LKL 290 Query: 313 IYDQTHP 319 I+ Q HP Sbjct: 291 IHQQHHP 297 >gi|157144439|ref|YP_001451758.1| site-specific tyrosine recombinase XerC [Citrobacter koseri ATCC BAA-895] gi|157081644|gb|ABV11322.1| hypothetical protein CKO_00153 [Citrobacter koseri ATCC BAA-895] Length = 300 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 93/311 (29%), Positives = 152/311 (48%), Gaps = 17/311 (5%) Query: 9 IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68 + L ++ +L+ L +ER LS +TL +Y+ RQ +A E +Q+ +Q Sbjct: 1 MTELSLSQDVARFLRYLGVERQLSPITLLNYQ---RQLDAIIALAGE--TGLQSWQQCDA 55 Query: 69 TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 +RAF + R + +G SL LS ++SF +L + + + K LP+ Sbjct: 56 AMVRAFAVRSRRKGLGPASLALRLSALRSFFDWLVSQGELNANPAKGVSAPKAPRHLPKN 115 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 ++ L+D L + R+ A+L ++YG GLR+SE + L +++ D + Sbjct: 116 IDVDDINRLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEV 169 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 + GKG K R +P+ + I + DL L + LF GK ++ Q+ Sbjct: 170 WVMGKGSKERRLPIGRNAVAWIEHWLDLR--GLFGSDDDALFLSKLGKRISARNVQKRFA 227 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 + GL H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ Sbjct: 228 EWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH--- 284 Query: 309 WMMEIYDQTHP 319 + +YD HP Sbjct: 285 -LASVYDAAHP 294 >gi|119026081|ref|YP_909926.1| site-specific tyrosine recombinase XerC [Bifidobacterium adolescentis ATCC 15703] gi|118765665|dbj|BAF39844.1| probable integrase [Bifidobacterium adolescentis ATCC 15703] Length = 329 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/291 (28%), Positives = 149/291 (51%), Gaps = 24/291 (8%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L+ RGLS T ++Y D + L+ L K + +++ ++R ++++ ++ Sbjct: 35 LKANRGLSANTRRAYRSDVEECLVAL-----RKQGCVDLNEVTIEDLRLWMAES-SKNHA 88 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--- 141 S+ R ++ F + + + + +++ K ++LP LNE QA L+D V Sbjct: 89 RSSMARKTVAVRGFFAWAYDHDMASANPAASLQTPKIPDTLPAVLNETQAQQLMDRVDED 148 Query: 142 -LLHTSHE----TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 + S E + I R++A+L LLY G+R++E + L ++ T+++ GKGDK Sbjct: 149 GMEARSQEPNMKKQAIALRDAAMLELLYATGMRVAELVGLDVADVTFGNRTVKVTGKGDK 208 Query: 197 IRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 R++P KA+ ++ + LC D++ + F G +G ++ + ++ + Sbjct: 209 QRVMPFGAPADKALRDWLEHGRPVLCG-DMSDDA---FFLGSQGGRIDQRMVRKVVHDRA 264 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 R G+P + H LRHS ATH+L G DLR +Q +LGH L TTQ YT+V+ Sbjct: 265 REAGVP-DISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVS 314 >gi|218550141|ref|YP_002383932.1| site-specific tyrosine recombinase XerD [Escherichia fergusonii ATCC 35469] gi|218357682|emb|CAQ90323.1| site-specific tyrosine recombinase [Escherichia fergusonii ATCC 35469] Length = 298 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 91/304 (29%), Positives = 158/304 (51%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +E+ L++ TL +Y R + + + +T+ T + +++A +++R Sbjct: 9 EQFLDALWLEKNLAENTLNAYR---RDLSMMVEWLHHRGLTLATAQS---DDLQALLAER 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL ++K + ++ + K LP+ L+E Q L+ Sbjct: 63 LEGGYKATSSARLLSAVRRLFQYLYRKKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L+ ++ R+ A+L +LY GLR+SE + LT +I Q +R+ GKG+K R Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VPL + Y + P+ LN ++I + LF R + + F I+ G+ Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292 Query: 316 QTHP 319 Q HP Sbjct: 293 QHHP 296 >gi|83313028|ref|YP_423292.1| site-specific recombinase XerD [Magnetospirillum magneticum AMB-1] gi|82947869|dbj|BAE52733.1| Site-specific recombinase XerD [Magnetospirillum magneticum AMB-1] Length = 308 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 88/294 (29%), Positives = 142/294 (48%), Gaps = 17/294 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L+ +++ERG S TL +Y D F FL + +R + A+I+++ Sbjct: 10 ESFLEMMQVERGASPNTLDAYGRDLADFAEFL-----DGRGFSPLRA-DARAVAAYIARQ 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + R+ R LS +K F ++ ++ + N+ + LP+ L ++ L+ Sbjct: 64 AEIGMAARTQARRLSCLKQFYGFVFAERLRPDDPTANIDAPRLGRPLPKYLRREEVTALL 123 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + + +A+L LY GLR+SE +SL + D S L ++GKG K R Sbjct: 124 DAARALEGSDGILM----TALLETLYAAGLRVSELVSLPLSAVARDPSVLVVRGKGSKER 179 Query: 199 IVPLLPSVRKAIL----EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 +VPL R A+L E L P P G G G F + + ++ Sbjct: 180 MVPLSDPARAALLAWKVERQTLVPKSKPSRWLFP-SSGALGHLTRSG-FAKMLGRVAVLA 237 Query: 255 GL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 GL P + H LRHSFA+HLL+ G DLRS+Q +LGH ++TT+IYT++ G Sbjct: 238 GLDPAKVSPHVLRHSFASHLLAGGADLRSVQEMLGHADIATTEIYTHLIDDEAG 291 >gi|110807498|ref|YP_691018.1| site-specific tyrosine recombinase XerC [Shigella flexneri 5 str. 8401] gi|123342340|sp|Q0SZ02|XERC_SHIF8 RecName: Full=Tyrosine recombinase xerC gi|110617046|gb|ABF05713.1| tyrosine recombinase [Shigella flexneri 5 str. 8401] Length = 298 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 91/307 (29%), Positives = 153/307 (49%), Gaps = 17/307 (5%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L + + +L+ L +ER LS +TL +Y+ RQ + F +E +Q+ +Q +R Sbjct: 3 DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIINFASEN--GLQSWQQCDAAMVR 57 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F + R + +G SL LS ++SF +L + + + K LP+ ++ Sbjct: 58 NFAVRSRHKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 L+D + + R+ A+L ++YG GLR+SE + L +++ + + + G Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 KG K R +P+ + I + DL DL + LF GK ++ Q+ + Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 GL H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ + Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285 Query: 313 IYDQTHP 319 +YD HP Sbjct: 286 VYDAAHP 292 >gi|332086819|gb|EGI91955.1| tyrosine recombinase XerD [Shigella boydii 5216-82] Length = 298 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 91/304 (29%), Positives = 157/304 (51%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +E+ L++ TL +Y R + + + +T+ T + +++A +++R Sbjct: 9 EQFLDALWLEKNLAENTLNAYR---RDLSMMVEWLHHRGVTLATAQS---DDLQALLAER 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K + ++ + K LP+ L+E Q L+ Sbjct: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L+ ++ R+ A+L +LY GLR+SE + LT +I Q +R+ GKG+K R Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VPL + Y + P+ LN ++I + LF R + + F I+ G+ Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292 Query: 316 QTHP 319 Q HP Sbjct: 293 QHHP 296 >gi|329942671|ref|ZP_08291450.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila psittaci Cal10] gi|332287266|ref|YP_004422167.1| site-specific tyrosine recombinase [Chlamydophila psittaci 6BC] gi|313847852|emb|CBY16846.1| putative integrase/recombinase [Chlamydophila psittaci RD1] gi|325506606|gb|ADZ18244.1| site-specific tyrosine recombinase [Chlamydophila psittaci 6BC] gi|328814931|gb|EGF84920.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila psittaci Cal10] gi|328914512|gb|AEB55345.1| site-specific recombinase, phage integrase family [Chlamydophila psittaci 6BC] Length = 312 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/254 (32%), Positives = 128/254 (50%), Gaps = 9/254 (3%) Query: 66 LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 L+ +R +I K + R++KR LS IKSF +Y K +I E ++ + L Sbjct: 66 LTKDAVRLYILKLMQENKAKRTIKRRLSAIKSFSQYCVKHRILPEDPTETIQGPRLPKEL 125 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 P + +Q +L+ T +K+ R+ +L L Y GLRISE +++ +I Sbjct: 126 PSPITYEQV-----EILMATPDLSKYTGFRDRCLLELFYSSGLRISEIVAINHWDIDFTS 180 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245 +RI+GKG K R+VP+ P + + +Y +F GK L R Sbjct: 181 HLIRIRGKGKKERLVPMTPHAAQWLQQYLTHPARTGIEKDSQAIFLNRFGKRLTTRSIDR 240 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 ++ R GL + T HT+RH+ ATH L NG DL++IQ++LGH L TT IYT+V+ K Sbjct: 241 KFQKYLRQSGLSGNITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTHVSMK- 299 Query: 306 GGDWMMEIYDQTHP 319 + +D++HP Sbjct: 300 ---LKKQTHDESHP 310 >gi|150003451|ref|YP_001298195.1| integrase [Bacteroides vulgatus ATCC 8482] gi|254881251|ref|ZP_05253961.1| integrase [Bacteroides sp. 4_3_47FAA] gi|294777667|ref|ZP_06743118.1| tyrosine recombinase XerD [Bacteroides vulgatus PC510] gi|319640253|ref|ZP_07994978.1| integrase [Bacteroides sp. 3_1_40A] gi|149931875|gb|ABR38573.1| integrase [Bacteroides vulgatus ATCC 8482] gi|254834044|gb|EET14353.1| integrase [Bacteroides sp. 4_3_47FAA] gi|294448735|gb|EFG17284.1| tyrosine recombinase XerD [Bacteroides vulgatus PC510] gi|317388028|gb|EFV68882.1| integrase [Bacteroides sp. 3_1_40A] Length = 313 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 91/287 (31%), Positives = 141/287 (49%), Gaps = 20/287 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 + Q L++E+ LS T+ +Y D + L A+ T E I I +R + F + Sbjct: 14 YKQYLKLEKSLSDNTVDAYLTDLDKLL---AYLTLENINILDVR---LENLEDFSAGLHD 67 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 I RS R LSGI+SF ++L + + + LP + ++ L+ + Sbjct: 68 IGIHPRSQARILSGIRSFYRFLIMEDYLKADPTELLESPQTGFKLPEVMTVEEIDLLIGS 127 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + T RN AIL LY CGLR+SE +L + ++ ++++GKG K R+V Sbjct: 128 IDRSTKE-----GQRNRAILETLYSCGLRVSELCNLKLSELYFEEGFIKVEGKGSKQRLV 182 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-----GKPLNPGVFQRYIRQLRRYLG 255 P+ P K I Y+ D NL P F GK ++ + I++L +G Sbjct: 183 PISPRAIKEIRLYFT----DRNLMKIKPGFEDFVFISNFGKNISRIMVFHIIKELAARIG 238 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 L + HT RHSFATHLL G +LR+IQ +LGH + TT+IYT+++ Sbjct: 239 LKKKISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHID 285 >gi|194336037|ref|YP_002017831.1| tyrosine recombinase XerD [Pelodictyon phaeoclathratiforme BU-1] gi|194308514|gb|ACF43214.1| tyrosine recombinase XerD [Pelodictyon phaeoclathratiforme BU-1] Length = 304 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 88/302 (29%), Positives = 154/302 (50%), Gaps = 13/302 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L + IER S T +SY D +++LIF+ + + + ++ I F+ + Sbjct: 13 ESFLNYMLIERNFSANTRESYSNDLKRYLIFMQHRS------RRLEMITKEHIEEFMGEL 66 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S+ R++S I+SF K+L + + N+ KK+ LP L + + L+ Sbjct: 67 YDIGLEASSIARNISAIRSFHKFLVIERTLNTNPAENIHQPKKAQYLPSVLTVDETMRLL 126 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + K++ R+ A+L LLY G+R+SE +++ Q++ D +RI GKG K R Sbjct: 127 A-APQSVNPPGKYV-LRDKAMLELLYATGVRVSELINIRQQSLYLDAGFVRIFGKGSKER 184 Query: 199 IVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ S + Y +L + N LF RG L+ +++ G+ Sbjct: 185 LVPVGTSAIGWVTRYQAELRIALVQRNSDDYLFLNARGIKLSRMALFTMVQKYAVMAGIE 244 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + + HT RH+FATHLL G DLR++Q +LGH + TTQIYT+++ ++ E++ Sbjct: 245 KNISPHTFRHTFATHLLEGGADLRAVQEMLGHRSIVTTQIYTHIDRL----FIKEVHKTF 300 Query: 318 HP 319 HP Sbjct: 301 HP 302 >gi|183221814|ref|YP_001839810.1| tyrosine recombinase XerC [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911886|ref|YP_001963441.1| tyrosine site-specific recombinase XerC [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776562|gb|ABZ94863.1| Tyrosine site-specific recombinase XerC [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780236|gb|ABZ98534.1| Tyrosine recombinase XerC [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 311 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 96/323 (29%), Positives = 170/323 (52%), Gaps = 34/323 (10%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 + P++++ +L + + +L+ IE+ S+ TL +Y R F F +E+I I ++ Sbjct: 12 EHFPQVMA-DLFRSYRTYLK---IEKNYSEHTLFAY---LRDLKFFFEFCLKEEIDILSV 64 Query: 64 RQLSYTEIRAFISKRRTQKIGD-RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122 L ++RA+ + ++ K D R+ R LS +++F K+L + + + IL + K Sbjct: 65 DVL---DVRAYFADLKSSKKQDKRTQSRKLSSLRTFYKFLFREEKIGANPILQVSFPKTK 121 Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWI-DARNSAILYLLYGCGLRISEALSLTPQNI 181 LP+ + +++L + E K + R+ AI+ +LY GLR+ E ++ ++ Sbjct: 122 KRLPKNFTPIET----EDILDYEDPEKKEVLGKRDKAIVEVLYSTGLRVFELVNAKLSDL 177 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKP 237 ++ ++L++ GK K R V + P + A+ EY D P ++ LN RG GK Sbjct: 178 NEELTSLKVMGKRRKERFVFIGPEAKVALQEYLDERGNGGPEEIFLNQ-----RG--GKL 230 Query: 238 LNPGVFQRYIRQLRR-YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 G+ RYI RR +G+ + T H RH+FAT LL+ G D+R++Q +LGH LS+TQ Sbjct: 231 TTRGI--RYILSERRSVMGMEKAITPHKFRHTFATDLLNAGADIRAVQELLGHSSLSSTQ 288 Query: 297 IYTNVNSKNGGDWMMEIYDQTHP 319 +Y +V+ D + E+Y HP Sbjct: 289 VYLSVSR----DRLKEVYRNAHP 307 >gi|313501207|gb|ADR62573.1| XerC [Pseudomonas putida BIRD-1] Length = 299 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 94/316 (29%), Positives = 151/316 (47%), Gaps = 47/316 (14%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + +L ER +S+ T Q Y D + + + E+ I + L ++R I++ Sbjct: 6 EAYCAHLRNERQVSEHTSQGYRRDLEKVIAYC-----EEHGIADWQALQIQQLRQLIARL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 RSL R LS ++ +YL + + + K LP+ L+ +AL L+ Sbjct: 61 HHHGQSPRSLARLLSAVRGLYRYLNREGLCQHDPATGLSAPKGERRLPKVLDTDRALQLL 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + + +I R+ AIL L Y GLR+SE +L ++ +++ GKG K R Sbjct: 121 DGGV-----DDDFIARRDQAILELFYSSGLRLSELTNLDLDHLDLAAGLVQVLGKGGKAR 175 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF---------QRYIRQ 249 ++P+ R+A+ +Y L RGI G P + VF R +R Sbjct: 176 VLPVGRKAREALQAWYRL--------------RGI-GNPRDRAVFITRQGNRISPRAVR- 219 Query: 250 LR------RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 LR R LG L H LRHSFA+H+L + DLR++Q +LGH +STTQIYT+++ Sbjct: 220 LRVKVAGERELGQHLHP--HMLRHSFASHVLESSQDLRAVQEMLGHADISTTQIYTHLDF 277 Query: 304 KNGGDWMMEIYDQTHP 319 ++ + +YD HP Sbjct: 278 QH----LAAVYDSAHP 289 >gi|332291018|ref|YP_004429627.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5] gi|332169104|gb|AEE18359.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5] Length = 295 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 88/302 (29%), Positives = 150/302 (49%), Gaps = 17/302 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L L +E+ SK T+ +YE D +FL F+ +E + + Y +IR++I Sbjct: 5 SFLDYLSLEKNYSKHTVIAYEKDVLEFLAFVKITFDE----SNLVDIHYAQIRSWIVSLV 60 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + +R++ R +S +K++ K+L K S + +LK L +E + + D Sbjct: 61 DNDVSNRTVNRKISSLKAYYKFLLKIGEVEASPLAKHTSLKTPKRLQIPFSEVEVGAVFD 120 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + + R+ I+ LLY G+R +E + LT +I Q T++I GK +K RI Sbjct: 121 RL----KEADDFATLRDLLIVELLYATGMRRAELVDLTVGSIDVVQKTIKIIGKRNKERI 176 Query: 200 VPLLPSVRKAILEY--YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 VP+L SV ++ Y Y + + + L +G + + R I + Sbjct: 177 VPMLSSV---VVTYDRYIAVRSSVASSGEDALLVTNKGAKIYSTLVYRIINRYFSETSDK 233 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 L T+ H LRHSFATHLL+ G DL ++ +LGH L++TQ+YT+ N + ++Y + Sbjct: 234 LKTSPHILRHSFATHLLNQGADLNIVKELLGHASLASTQVYTH----NSVQALKDVYSKA 289 Query: 318 HP 319 HP Sbjct: 290 HP 291 >gi|281424791|ref|ZP_06255704.1| tyrosine recombinase XerD [Prevotella oris F0302] gi|281401161|gb|EFB31992.1| tyrosine recombinase XerD [Prevotella oris F0302] Length = 307 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 91/287 (31%), Positives = 154/287 (53%), Gaps = 14/287 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L+ L++ER S+ TL +Y D + +L Y + + T QL +++ F + Sbjct: 13 KSYLRYLKLERNYSQNTLDAYSHD----ITWLMDYCKREGLEVTALQLE--DLQHFAATL 66 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLK-KRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 +IG RS R LSGI+SF ++L I T+ L + + LP L+ + L Sbjct: 67 HEFQIGPRSQSRILSGIRSFYRFLLLDGYIETDPTEL-LESPALGQHLPEVLSTAEVDML 125 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 ++ L +K RN AI+ +L+ CGLR+SE ++L + D +R+ GKG K Sbjct: 126 EQSIDL-----SKLEGQRNLAIIEVLFSCGLRVSELVNLKLSQLYLDDGFIRVLGKGSKE 180 Query: 198 RIVPLLP-SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 R+VP+ P ++++ L + D ++ + +F RG L + I++ G+ Sbjct: 181 RLVPISPRAIKELQLWFTDRVHLNIKPGEEDFVFLNRRGHHLTRTMILIMIKRQAEEAGI 240 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + + HTLRHSFAT LL G DLR+IQ++LGH + TT+IYT++++ Sbjct: 241 KKTISPHTLRHSFATALLQGGADLRAIQAMLGHESIGTTEIYTHIDT 287 >gi|50842870|ref|YP_056097.1| site-specific tyrosine recombinase XerD [Propionibacterium acnes KPA171202] gi|289425573|ref|ZP_06427350.1| tyrosine recombinase XerD [Propionibacterium acnes SK187] gi|289428211|ref|ZP_06429907.1| tyrosine recombinase XerD [Propionibacterium acnes J165] gi|295130925|ref|YP_003581588.1| tyrosine recombinase XerD [Propionibacterium acnes SK137] gi|50840472|gb|AAT83139.1| site-specific recombinase [Propionibacterium acnes KPA171202] gi|289154551|gb|EFD03239.1| tyrosine recombinase XerD [Propionibacterium acnes SK187] gi|289158592|gb|EFD06799.1| tyrosine recombinase XerD [Propionibacterium acnes J165] gi|291376433|gb|ADE00288.1| tyrosine recombinase XerD [Propionibacterium acnes SK137] gi|313764051|gb|EFS35415.1| tyrosine recombinase XerD [Propionibacterium acnes HL013PA1] gi|313792446|gb|EFS40539.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA1] gi|313801509|gb|EFS42758.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA2] gi|313807151|gb|EFS45646.1| tyrosine recombinase XerD [Propionibacterium acnes HL087PA2] gi|313809643|gb|EFS47379.1| tyrosine recombinase XerD [Propionibacterium acnes HL083PA1] gi|313813282|gb|EFS50996.1| tyrosine recombinase XerD [Propionibacterium acnes HL025PA1] gi|313816401|gb|EFS54115.1| tyrosine recombinase XerD [Propionibacterium acnes HL059PA1] gi|313819347|gb|EFS57061.1| tyrosine recombinase XerD [Propionibacterium acnes HL046PA2] gi|313819996|gb|EFS57710.1| tyrosine recombinase XerD [Propionibacterium acnes HL036PA1] gi|313823212|gb|EFS60926.1| tyrosine recombinase XerD [Propionibacterium acnes HL036PA2] gi|313825000|gb|EFS62714.1| tyrosine recombinase XerD [Propionibacterium acnes HL063PA1] gi|313827302|gb|EFS65016.1| tyrosine recombinase XerD [Propionibacterium acnes HL063PA2] gi|313829963|gb|EFS67677.1| tyrosine recombinase XerD [Propionibacterium acnes HL007PA1] gi|313833033|gb|EFS70747.1| tyrosine recombinase XerD [Propionibacterium acnes HL056PA1] gi|313838270|gb|EFS75984.1| tyrosine recombinase XerD [Propionibacterium acnes HL086PA1] gi|314914912|gb|EFS78743.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA4] gi|314917863|gb|EFS81694.1| tyrosine recombinase XerD [Propionibacterium acnes HL050PA1] gi|314919752|gb|EFS83583.1| tyrosine recombinase XerD [Propionibacterium acnes HL050PA3] gi|314924835|gb|EFS88666.1| tyrosine recombinase XerD [Propionibacterium acnes HL036PA3] gi|314930006|gb|EFS93837.1| tyrosine recombinase XerD [Propionibacterium acnes HL067PA1] gi|314956418|gb|EFT00730.1| tyrosine recombinase XerD [Propionibacterium acnes HL027PA1] gi|314957287|gb|EFT01390.1| tyrosine recombinase XerD [Propionibacterium acnes HL002PA1] gi|314960608|gb|EFT04710.1| tyrosine recombinase XerD [Propionibacterium acnes HL002PA2] gi|314963140|gb|EFT07240.1| tyrosine recombinase XerD [Propionibacterium acnes HL082PA1] gi|314967736|gb|EFT11835.1| tyrosine recombinase XerD [Propionibacterium acnes HL037PA1] gi|314972871|gb|EFT16968.1| tyrosine recombinase XerD [Propionibacterium acnes HL053PA1] gi|314975706|gb|EFT19801.1| tyrosine recombinase XerD [Propionibacterium acnes HL045PA1] gi|314978092|gb|EFT22186.1| tyrosine recombinase XerD [Propionibacterium acnes HL072PA2] gi|314984110|gb|EFT28202.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA1] gi|314986253|gb|EFT30345.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA2] gi|314989533|gb|EFT33624.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA3] gi|315078203|gb|EFT50246.1| tyrosine recombinase XerD [Propionibacterium acnes HL053PA2] gi|315080906|gb|EFT52882.1| tyrosine recombinase XerD [Propionibacterium acnes HL078PA1] gi|315086002|gb|EFT57978.1| tyrosine recombinase XerD [Propionibacterium acnes HL002PA3] gi|315088279|gb|EFT60255.1| tyrosine recombinase XerD [Propionibacterium acnes HL072PA1] gi|315095700|gb|EFT67676.1| tyrosine recombinase XerD [Propionibacterium acnes HL038PA1] gi|315098208|gb|EFT70184.1| tyrosine recombinase XerD [Propionibacterium acnes HL059PA2] gi|315101638|gb|EFT73614.1| tyrosine recombinase XerD [Propionibacterium acnes HL046PA1] gi|315105953|gb|EFT77929.1| tyrosine recombinase XerD [Propionibacterium acnes HL030PA1] gi|315109457|gb|EFT81433.1| tyrosine recombinase XerD [Propionibacterium acnes HL030PA2] gi|327327897|gb|EGE69671.1| tyrosine recombinase XerD [Propionibacterium acnes HL096PA3] gi|327330004|gb|EGE71758.1| tyrosine recombinase XerD [Propionibacterium acnes HL097PA1] gi|327330036|gb|EGE71789.1| tyrosine recombinase XerD [Propionibacterium acnes HL096PA2] gi|327442733|gb|EGE89387.1| tyrosine recombinase XerD [Propionibacterium acnes HL043PA1] gi|327443869|gb|EGE90523.1| tyrosine recombinase XerD [Propionibacterium acnes HL043PA2] gi|327443937|gb|EGE90591.1| tyrosine recombinase XerD [Propionibacterium acnes HL013PA2] gi|327452342|gb|EGE98996.1| tyrosine recombinase XerD [Propionibacterium acnes HL087PA3] gi|327452783|gb|EGE99437.1| tyrosine recombinase XerD [Propionibacterium acnes HL083PA2] gi|327453535|gb|EGF00190.1| tyrosine recombinase XerD [Propionibacterium acnes HL092PA1] gi|328752650|gb|EGF66266.1| tyrosine recombinase XerD [Propionibacterium acnes HL025PA2] gi|328753798|gb|EGF67414.1| tyrosine recombinase XerD [Propionibacterium acnes HL087PA1] gi|328755026|gb|EGF68642.1| tyrosine recombinase XerD [Propionibacterium acnes HL020PA1] gi|328761444|gb|EGF74970.1| tyrosine recombinase XerD [Propionibacterium acnes HL099PA1] Length = 306 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 95/311 (30%), Positives = 158/311 (50%), Gaps = 27/311 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L++L +ERGLS T+Q+Y D ++ +L I ++ +++ ++ F +R Sbjct: 10 EDYLRHLVVERGLSDNTVQAYRRDLLRYQEYLG-----SRGIGSLAEVTRVDVEEF--RR 62 Query: 79 RTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 IG S+ R + +++ ++ M +S LP+AL+ Q + Sbjct: 63 HLDHIGLAPASVTRCVVAVRNLHRFAVGSGQLQADVTAGMSPGTRSRRLPKALSMDQVES 122 Query: 137 LVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNI---MDDQS-TLRIQ 191 L+ + +T ++ R++A+L LLYG G R+SE +L +I +DD LR+ Sbjct: 123 LL------AAPDTSTVEGLRDAALLELLYGTGARVSEVCALDVDDIRPVLDDPDLGLRLI 176 Query: 192 GKGDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 GKGDK RIVPL KA+ + + N + L RG+ L+ IR+ Sbjct: 177 GKGDKERIVPLGSYAAKAVDAWLIRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAVIRR 236 Query: 250 LRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 GL + + H+LRHS+ATHLL G D+R +Q +LGH ++TTQIYT V + D Sbjct: 237 AGEAAGLDVEHLSPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYTLVTA----D 292 Query: 309 WMMEIYDQTHP 319 + E+Y +HP Sbjct: 293 HLREVYRSSHP 303 >gi|305664395|ref|YP_003860682.1| putative site-specific recombinase [Maribacter sp. HTCC2170] gi|88708412|gb|EAR00648.1| putative site-specific recombinase [Maribacter sp. HTCC2170] Length = 297 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/303 (28%), Positives = 161/303 (53%), Gaps = 16/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q++ L +E+ SK T+ +YE D + F+ F ++++ +++I + Y IR +I Sbjct: 4 QSFTSYLLLEKNYSKHTVNAYEKDIQSFIDF----CDKELKLESINNVEYNIIRNWIVTL 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 I +RS+ R ++ +K++ K+L++ + + + LK S + +E++ + Sbjct: 60 VNTGISNRSVNRKIASLKAYYKFLQRVGSININPLAKHKALKTSKKIEVPFSEEE----M 115 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 +LL E + +R+ I+ LLY G+R SE ++L ++ +Q ++++ GK +K R Sbjct: 116 QRILLQLPFEDDFEGSRDKLIIELLYTTGIRRSELINLRTNSVDLNQRSMKVLGKRNKER 175 Query: 199 IVPLL-PSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 IVPLL P++ + E Y +L N+ +F I G + + R I+ + Sbjct: 176 IVPLLLPTI--DLFEAYFRYRKELENITHDEYIFLTISGNKIYETLVYRIIKGYFSKVSS 233 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + + H LRH+FATHLL+ G DL S++ +LGH L++TQ+YT+ N + +++ Sbjct: 234 KVKRSPHILRHTFATHLLNKGADLNSVKELLGHSSLASTQVYTH----NSIAELKKVHSS 289 Query: 317 THP 319 HP Sbjct: 290 AHP 292 >gi|283835346|ref|ZP_06355087.1| tyrosine recombinase XerD [Citrobacter youngae ATCC 29220] gi|291068511|gb|EFE06620.1| tyrosine recombinase XerD [Citrobacter youngae ATCC 29220] Length = 298 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 92/304 (30%), Positives = 155/304 (50%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ER L++ TL +Y D + +L T Q+ +++A +++R Sbjct: 9 EQFLDALWLERNLAENTLSAYRRDLSMLVEWLHHRGVSLATAQS------DDLQALLAER 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS + F ++L + K + ++ + K LP+ L+E Q L+ Sbjct: 63 MDGGYKATSSARLLSATRRFFQHLYREKYREDDPSASLASPKLPQRLPKDLSEAQVERLL 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L+ ++ R+ A+L +LY GLR+SE + LT ++ Q +R+ GKG+K R Sbjct: 123 QAPLIEQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVIGKGNKER 177 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VPL + Y + P+ LN ++I + LF R + + F I+ G+ Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292 Query: 316 QTHP 319 Q HP Sbjct: 293 QHHP 296 >gi|170018860|ref|YP_001723814.1| site-specific tyrosine recombinase XerD [Escherichia coli ATCC 8739] gi|169753788|gb|ACA76487.1| tyrosine recombinase XerD [Escherichia coli ATCC 8739] Length = 298 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 92/304 (30%), Positives = 158/304 (51%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +E+ L++ TL +Y C R + + + +T+ T + +++A +++R Sbjct: 9 EQFLDALWLEKNLAENTLNAY-C--RDLSMMVEWLHHRGLTLATAQS---DDLQALLAER 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K + ++ + K LP+ L+E Q L+ Sbjct: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L+ ++ R+ A+L +LY GLR+SE + LT +I Q +R+ GKG+K R Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VPL + Y + P+ LN ++I + LF R + + F I+ G+ Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292 Query: 316 QTHP 319 Q HP Sbjct: 293 QHHP 296 >gi|83951798|ref|ZP_00960530.1| tyrosine recombinase XerD [Roseovarius nubinhibens ISM] gi|83836804|gb|EAP76101.1| tyrosine recombinase XerD [Roseovarius nubinhibens ISM] Length = 314 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 93/305 (30%), Positives = 153/305 (50%), Gaps = 40/305 (13%) Query: 19 QNW----LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK-ITIQTIRQLSYTEIRA 73 Q W L E G +K TL +Y D F + + E K +++ T++Q +++ A Sbjct: 4 QRWIALFLDAQAAEMGAAKNTLMAYARDLSDF----SQWVENKSLSLATLQQ---SDVEA 56 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 ++ Q + + R LS +K ++ ++ ++ L ++ +S LP+ L+E + Sbjct: 57 YLVHCDAQGLAQSTRARRLSAVKQLYRFAFDERLRGDNPALRIKGPGRSGRLPKTLSEAE 116 Query: 134 ALTLVDNVLLHT-SHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 VD +L SH D RN+ ++ LLY GLR++E +SL + L ++ Sbjct: 117 ----VDGLLQAARSHGRGPADRLRNTCLMELLYATGLRVTELVSLPVAATRGNPELLMVR 172 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF-------- 243 GKG K R+VPL P + A+ ++ L + +G P +P +F Sbjct: 173 GKGGKERMVPLSPPAQVALRDW-------LAHRDAMEETARQKGLPASPFLFPSRSKDGH 225 Query: 244 ---QRY---IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 R+ I+ L G+ P T HTLRH+FATHLL+NG DLR+IQ++LGH ++TT+ Sbjct: 226 LTRHRFYLLIKDLAVAAGVSPSKVTPHTLRHAFATHLLANGADLRAIQTLLGHADVATTE 285 Query: 297 IYTNV 301 IYT+V Sbjct: 286 IYTHV 290 >gi|24115108|ref|NP_709618.1| site-specific tyrosine recombinase XerC [Shigella flexneri 2a str. 301] gi|30064893|ref|NP_839064.1| site-specific tyrosine recombinase XerC [Shigella flexneri 2a str. 2457T] gi|82779010|ref|YP_405359.1| site-specific tyrosine recombinase XerC [Shigella dysenteriae Sd197] gi|194438678|ref|ZP_03070766.1| tyrosine recombinase XerC [Escherichia coli 101-1] gi|253775565|ref|YP_003038396.1| site-specific tyrosine recombinase XerC [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163753|ref|YP_003046861.1| site-specific tyrosine recombinase XerC [Escherichia coli B str. REL606] gi|293417277|ref|ZP_06659902.1| tyrosine recombinase XerC [Escherichia coli B185] gi|297521542|ref|ZP_06939928.1| site-specific tyrosine recombinase XerC [Escherichia coli OP50] gi|300904066|ref|ZP_07121946.1| tyrosine recombinase XerC [Escherichia coli MS 84-1] gi|300921478|ref|ZP_07137826.1| tyrosine recombinase XerC [Escherichia coli MS 115-1] gi|300930023|ref|ZP_07145455.1| tyrosine recombinase XerC [Escherichia coli MS 187-1] gi|301303707|ref|ZP_07209828.1| tyrosine recombinase XerC [Escherichia coli MS 124-1] gi|309784527|ref|ZP_07679165.1| tyrosine recombinase XerC [Shigella dysenteriae 1617] gi|312971902|ref|ZP_07786076.1| tyrosine recombinase XerC [Escherichia coli 1827-70] gi|331655496|ref|ZP_08356489.1| tyrosine recombinase XerC [Escherichia coli M718] gi|34222798|sp|Q7ZAL9|XERC_SHIFL RecName: Full=Tyrosine recombinase xerC gi|123769525|sp|Q329Y7|XERC_SHIDS RecName: Full=Tyrosine recombinase xerC gi|24054376|gb|AAN45325.1| site-specific recombinase [Shigella flexneri 2a str. 301] gi|30043153|gb|AAP18875.1| site-specific recombinase [Shigella flexneri 2a str. 2457T] gi|81243158|gb|ABB63868.1| site-specific recombinase [Shigella dysenteriae Sd197] gi|194422482|gb|EDX38481.1| tyrosine recombinase XerC [Escherichia coli 101-1] gi|242379341|emb|CAQ34153.1| site-specific recombinase, acts on cer sequence of ColE1, effects chromosome segregation at cell division, subunit of Xer site-specific recombination system [Escherichia coli BL21(DE3)] gi|253326609|gb|ACT31211.1| tyrosine recombinase XerC [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975654|gb|ACT41325.1| site-specific tyrosine recombinase XerC [Escherichia coli B str. REL606] gi|253979810|gb|ACT45480.1| site-specific tyrosine recombinase XerC [Escherichia coli BL21(DE3)] gi|281603204|gb|ADA76188.1| Tyrosine recombinase xerC [Shigella flexneri 2002017] gi|291431045|gb|EFF04040.1| tyrosine recombinase XerC [Escherichia coli B185] gi|300403946|gb|EFJ87484.1| tyrosine recombinase XerC [Escherichia coli MS 84-1] gi|300411595|gb|EFJ94905.1| tyrosine recombinase XerC [Escherichia coli MS 115-1] gi|300462056|gb|EFK25549.1| tyrosine recombinase XerC [Escherichia coli MS 187-1] gi|300841007|gb|EFK68767.1| tyrosine recombinase XerC [Escherichia coli MS 124-1] gi|308927633|gb|EFP73102.1| tyrosine recombinase XerC [Shigella dysenteriae 1617] gi|310334279|gb|EFQ00484.1| tyrosine recombinase XerC [Escherichia coli 1827-70] gi|313647147|gb|EFS11602.1| tyrosine recombinase XerC [Shigella flexneri 2a str. 2457T] gi|315254176|gb|EFU34144.1| tyrosine recombinase XerC [Escherichia coli MS 85-1] gi|323959066|gb|EGB54735.1| tyrosine recombinase XerC [Escherichia coli H489] gi|323969348|gb|EGB64647.1| tyrosine recombinase XerC [Escherichia coli TA007] gi|331046817|gb|EGI18901.1| tyrosine recombinase XerC [Escherichia coli M718] gi|332750959|gb|EGJ81364.1| tyrosine recombinase XerC [Shigella flexneri 4343-70] gi|332751049|gb|EGJ81453.1| tyrosine recombinase XerC [Shigella flexneri K-671] gi|332751906|gb|EGJ82301.1| tyrosine recombinase XerC [Shigella flexneri 2747-71] gi|332764345|gb|EGJ94580.1| tyrosine recombinase XerC [Shigella flexneri 2930-71] gi|332996985|gb|EGK16603.1| tyrosine recombinase XerC [Shigella flexneri VA-6] gi|332997912|gb|EGK17519.1| tyrosine recombinase XerC [Shigella flexneri K-218] gi|332998245|gb|EGK17847.1| tyrosine recombinase XerC [Shigella flexneri K-272] gi|333013785|gb|EGK33148.1| tyrosine recombinase XerC [Shigella flexneri K-227] gi|333019500|gb|EGK38781.1| tyrosine recombinase XerC [Shigella flexneri K-304] Length = 298 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 91/307 (29%), Positives = 153/307 (49%), Gaps = 17/307 (5%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L + + +L+ L +ER LS +TL +Y+ RQ + F +E +Q+ +Q +R Sbjct: 3 DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIINFASEN--GLQSWQQCDAAMVR 57 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F + R + +G SL LS ++SF +L + + + K LP+ ++ Sbjct: 58 NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 L+D + + R+ A+L ++YG GLR+SE + L +++ + + + G Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 KG K R +P+ + I + DL DL + LF GK ++ Q+ + Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 GL H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ + Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285 Query: 313 IYDQTHP 319 +YD HP Sbjct: 286 VYDAAHP 292 >gi|257458301|ref|ZP_05623450.1| tyrosine recombinase XerD [Treponema vincentii ATCC 35580] gi|257444328|gb|EEV19422.1| tyrosine recombinase XerD [Treponema vincentii ATCC 35580] Length = 297 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/262 (29%), Positives = 141/262 (53%), Gaps = 16/262 (6%) Query: 63 IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122 I S + F+ R + I R+L + + ++SF ++L+ + ++ + + ++ Sbjct: 44 IEDASADDCIGFLLARAEEGITGRTLAKDQAALRSFYRFLQLENVRADNPAEQLESPRRE 103 Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 +LPRAL + L+ + L T + R+ A+ L+Y GLR+SEA++L+ ++I Sbjct: 104 KNLPRALELDEVDKLLAAIPLDTPN-----GIRDRALFELIYSAGLRVSEAVTLSLEDIF 158 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDL------NLNIQLPLFRGIRG 235 ++ L+++GKG K RIVP + + Y P L N +F G Sbjct: 159 FNEQLLKVRGKGGKERIVPFGAQAEERLTVYLKTARPLLLKPAHSENTETTGAVFLNHHG 218 Query: 236 KPLN-PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 + L G+++R ++++ + G+ +T HTLRHS+ATHLL+ G DLRS+Q +LGH ++T Sbjct: 219 ERLTRKGIWKR-LQEIEQLSGV--TTKIHTLRHSYATHLLAGGADLRSVQCLLGHASIAT 275 Query: 295 TQIYTNVNSKNGGDWMMEIYDQ 316 TQIYT++ K+ + + + Q Sbjct: 276 TQIYTHIEDKDLEAYHRKFFKQ 297 >gi|332526676|ref|ZP_08402778.1| tyrosine recombinase XerD subunit [Rubrivivax benzoatilyticus JA2] gi|332111079|gb|EGJ11111.1| tyrosine recombinase XerD subunit [Rubrivivax benzoatilyticus JA2] Length = 310 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/300 (28%), Positives = 154/300 (51%), Gaps = 16/300 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 ++ L IE GL+ LTL +Y D + +LA +++ R+ ++ A+I++R T Sbjct: 24 FVDALWIEDGLAPLTLAAYRRDLTLYAGWLARRHAKRL--DDSRE---ADLLAYIAERHT 78 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + R L+ K + ++ + + L +++ ++ +P++L+E+Q V+ Sbjct: 79 ATRAT-TANRRLTVFKRYFRWALREHLVAADPTLRLQSARQPLRVPKSLSERQ----VEA 133 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 +L +T + R+ A+L L+YG GLR+SE + L ++ + LR+ GKG K RIV Sbjct: 134 LLAAPETDTA-LGLRDRAMLELMYGSGLRVSELVGLKSVHLGLAEGVLRVVGKGSKERIV 192 Query: 201 PLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P + Y + L LF RG + F +++ R G+ + Sbjct: 193 PFGEEAHGWLQRYLGEARAAILGGQASDALFVTARGGAMTRQAFWLLVKKYARAAGILVP 252 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLR++Q +LGH + TT IYT+V + + +++ + HP Sbjct: 253 LSPHTLRHAFATHLLNHGADLRAVQMLLGHADIGTTTIYTHVARER----LRQLHARHHP 308 >gi|262280674|ref|ZP_06058457.1| tyrosine recombinase XerD [Acinetobacter calcoaceticus RUH2202] gi|262257574|gb|EEY76309.1| tyrosine recombinase XerD [Acinetobacter calcoaceticus RUH2202] Length = 306 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 131/234 (55%), Gaps = 9/234 (3%) Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 RS+ R LS ++ F K+L+++K+ +++ + + K +LP+ L+E+ +L+ ++T Sbjct: 80 RSIARCLSTLRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVESLIQAPDINT 139 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 + + R+ A+ +LY CGLR+SE L+L + I Q LR+ GKG+K R+VPL Sbjct: 140 A-----LGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRVTGKGNKERLVPLGQF 194 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + + Y + L + LF G ++ F I++ + + HTL Sbjct: 195 ACEWVERYLNNARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAELSPHTL 254 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 RH+FATHLL++G DLR +Q +LGH LSTTQIYT+V M +++++ HP Sbjct: 255 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR----MQQLHEKHHP 304 >gi|225076001|ref|ZP_03719200.1| hypothetical protein NEIFLAOT_01028 [Neisseria flavescens NRL30031/H210] gi|224952716|gb|EEG33925.1| hypothetical protein NEIFLAOT_01028 [Neisseria flavescens NRL30031/H210] Length = 316 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/301 (28%), Positives = 150/301 (49%), Gaps = 25/301 (8%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS--KRRTQK-I 83 +++G S+ T+ +Y D + + L E + + R F++ K+ +QK + Sbjct: 37 LQQGKSEHTVSAYWRDLSELMRLLPDNLENGLPTR----------RDFVAVLKKLSQKGL 86 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 + SL R LS + + +L + ++ NM+ + LP+AL ++ ++++L Sbjct: 87 SESSLARKLSVWRQYCSWLVQIEVMESDPTFNMKAPRLPERLPKALPQEP----LNHILD 142 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 H + + +D R+ A+ L+YG GLR+SE L I+ D+ + ++GKG K R VPL Sbjct: 143 HAPVDDE-LDVRDKAMFELMYGSGLRLSEIQGLNLDGIVLDEGWVSVKGKGGKQRQVPL- 200 Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 V K+I D + + LF G L Q+ ++ +G + H Sbjct: 201 --VAKSIAALRDYLAVRIAKEGEQALFTNKNGGRLGQRQIQKRLQAWAVRVGSASHISPH 258 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323 +RHS+ATHLL GD+R++Q +LGH LS TQ+YT ++ D + +YD+ HP + Sbjct: 259 MMRHSYATHLLQASGDIRAVQELLGHSNLSATQVYTKLDF----DHLARVYDEAHPRAKR 314 Query: 324 K 324 K Sbjct: 315 K 315 >gi|119716715|ref|YP_923680.1| tyrosine recombinase XerD [Nocardioides sp. JS614] gi|119537376|gb|ABL81993.1| tyrosine recombinase XerD subunit [Nocardioides sp. JS614] Length = 318 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 94/328 (28%), Positives = 158/328 (48%), Gaps = 36/328 (10%) Query: 10 VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69 S ++ + + +L +L +ERGL+ TL SY D R++ +LA + ++ + ++ Sbjct: 5 ASNDVARAVRTYLDHLTVERGLATNTLTSYRRDLRRYQEYLA-----ECGVEHLADVTEG 59 Query: 70 EIRAFISKRRTQKIGDR--------SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121 + AF+ + R GDR S R++ ++ F ++ + ++ Sbjct: 60 TVAAFLVRLRE---GDRDHPALSATSAARTVVAVRGFHRFAVADGLAATDPASAVKPPTP 116 Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 + LP+AL L V+ +L + R+ A+L +LYG G RISEA+ L ++ Sbjct: 117 AKRLPKALP----LADVEAILEAAGAPGTTLALRDRALLEVLYGTGARISEAVGLDVDDL 172 Query: 182 MDDQS----TLRIQGKGDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRG 232 +S T+ ++GKG K R+VP+ R+A+ Y +L + LF Sbjct: 173 DWGESGVEGTVLLRGKGGKERLVPVGSYAREAVDAYLVRGRPELVAASARVTGG-ALFLN 231 Query: 233 IRGKPLN-PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291 RG L+ + +R R G+ + HTLRHSFATHLL G D+R +Q +LGH Sbjct: 232 ARGGRLSRQSAWAVLVRAAERA-GVTRDVSPHTLRHSFATHLLDGGADVRVVQELLGHAS 290 Query: 292 LSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 ++TTQ+YT V N + E++ HP Sbjct: 291 VTTTQVYTLVTVDN----LREVFATAHP 314 >gi|120553434|ref|YP_957785.1| tyrosine recombinase XerC [Marinobacter aquaeolei VT8] gi|120323283|gb|ABM17598.1| tyrosine recombinase XerC [Marinobacter aquaeolei VT8] Length = 324 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 84/302 (27%), Positives = 154/302 (50%), Gaps = 20/302 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++++L+ E+ S T + Y+ D ++ + +LA + +LS ++R ++++ Sbjct: 20 GFIRHLQSEKRHSPRTCEHYQRDLQRLVAWLA-----DNGLNDWSELSAHDVRRYVARLS 74 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + RS+ R LS I+ F +YL + + ++ L++R K LPR + Q L+D Sbjct: 75 RDGLSGRSIARHLSSIRRFYQYLLREGLAIDNPALDIRAPKSGRRLPRVADVDQIGQLLD 134 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 ++ R+ A+ L+Y GLR++E + +R+ GKG+K R+ Sbjct: 135 AT------PEDPLEIRDLAMFELMYSSGLRLAELAGADLSALDLKGPEIRVLGKGNKERV 188 Query: 200 VPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +P+ RKA+ L+ + C L + LF RG L+ Q + + G Sbjct: 189 LPV---GRKAVAALQQWLSCRRALVTEGEKALFVSQRGTRLSRRSIQSRLSRWGILHGAD 245 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 H LRHSFA+H+L + GDLR++Q +LGH ++TTQ+YT+++ ++ + +YDQ+ Sbjct: 246 QRLHPHLLRHSFASHMLESSGDLRAVQELLGHADIATTQVYTHLDFQH----LARVYDQS 301 Query: 318 HP 319 HP Sbjct: 302 HP 303 >gi|323964056|gb|EGB59546.1| tyrosine recombinase XerC [Escherichia coli M863] gi|327250661|gb|EGE62367.1| tyrosine recombinase XerC [Escherichia coli STEC_7v] Length = 298 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 91/307 (29%), Positives = 153/307 (49%), Gaps = 17/307 (5%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L + + +L+ L +ER LS +TL +Y+ RQ + F +E +Q+ +Q +R Sbjct: 3 DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIINFASEN--GLQSWQQCDAAMVR 57 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F + R + +G SL LS ++SF +L + + + K LP+ ++ Sbjct: 58 NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 L+D + + R+ A+L ++YG GLR+SE + L +++ + + + G Sbjct: 118 DINRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 KG K R +P+ + I + DL DL + LF GK ++ Q+ + Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 GL H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ + Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285 Query: 313 IYDQTHP 319 +YD HP Sbjct: 286 VYDAAHP 292 >gi|323173892|gb|EFZ59521.1| tyrosine recombinase XerD [Escherichia coli LT-68] Length = 298 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 90/303 (29%), Positives = 153/303 (50%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +E+ L++ TL +Y R + + + +T+ T + +++A +++R Sbjct: 9 EQFLDALWLEKNLAENTLNAYR---RDLSMMVEWLHHRGLTLATAQS---DDLQALLAER 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K + ++ + K LP+ L+E Q L+ Sbjct: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L+ ++ R+ A+L +LY GLR+SE + LT +I Q +R+ GKG+K R Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL + Y + P+ LN LF R + + F I+ G+ Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNCVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGID 237 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Q Sbjct: 238 SEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQ 293 Query: 317 THP 319 HP Sbjct: 294 HHP 296 >gi|312795208|ref|YP_004028130.1| integrase/recombinase (XerD/RipX family) [Burkholderia rhizoxinica HKI 454] gi|312166983|emb|CBW73986.1| Integrase/recombinase (XerD/RipX family) [Burkholderia rhizoxinica HKI 454] Length = 308 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 92/280 (32%), Positives = 142/280 (50%), Gaps = 17/280 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E GLS+ TL +Y D + +LA T E+ T+ R+ +++ +++ R K Sbjct: 27 LWLEHGLSRNTLDAYRRDLSLYCDWLA-ATHER-TLDATRE---SDLNGYLAVRSDGKAS 81 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S R LS + + + + L +R+ ++ P +LNE Q L+ L Sbjct: 82 --SANRRLSVFRRYFAWALREHRVAADPTLRIRSARQPPRFPSSLNEAQVEALLGAPDLD 139 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 T + R+ A+L L+Y GLR+SE ++L + ++ +R+ GKG K R+VP Sbjct: 140 TP-----LGLRDRAMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGAKERLVPFGD 194 Query: 205 SVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ--LRRYLGLPLSTT 261 R + Y D L LF RG + F I++ LR + +PLS Sbjct: 195 EARGWLERYLRDARAVLLGARGADALFVTARGGAMTRQQFWNIIKRYALRADIHVPLSP- 253 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V Sbjct: 254 -HTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHV 292 >gi|260223080|emb|CBA33286.1| Tyrosine recombinase xerD [Curvibacter putative symbiont of Hydra magnipapillata] Length = 297 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 95/312 (30%), Positives = 148/312 (47%), Gaps = 39/312 (12%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLA---FYTEEKITIQTIRQLSYTEIRAFISK 77 ++ L +E GLSK TLQ+Y D F LA Y ++ +Q + E +A + Sbjct: 10 FIDALWLEEGLSKNTLQAYRRDLTLFAGHLAPKPLYGAQEHDLQGYFAARHAETKATTAN 69 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 RR L+ +K F ++ + + L ++ K++ +P+ L E Q Sbjct: 70 RR------------LTVLKRFFRWALREGHIAQDPTLKLQAAKQALRVPKTLTEAQV--- 114 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 LL+ + + R+ A+L LLY GLR+SE ++L + ++ LR+ GKG K Sbjct: 115 --EALLNAPDTNEALGIRDKAMLELLYASGLRVSELVTLRMVQLGLNEGVLRVTGKGSKE 172 Query: 198 RIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNP--------GVFQRYI 247 R+VP V L Y P L +F +RG G+ +RY Sbjct: 173 RLVPF-GEVAGLWLSRYLAGPRAELLAAKQSADVFVTVRGSKSGTAMSRIMFWGLVKRYA 231 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 Q G+ + + HTLRH+FATHLL++G DLRS+Q +LGH +STT IYT++ Sbjct: 232 LQA----GIRVPLSPHTLRHAFATHLLNHGADLRSVQMLLGHADISTTTIYTHIAR---- 283 Query: 308 DWMMEIYDQTHP 319 D + ++ Q HP Sbjct: 284 DRLASLHAQHHP 295 >gi|99081269|ref|YP_613423.1| phage integrase [Ruegeria sp. TM1040] gi|99037549|gb|ABF64161.1| phage integrase [Ruegeria sp. TM1040] Length = 317 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 97/325 (29%), Positives = 155/325 (47%), Gaps = 40/325 (12%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +L E G ++ TL +Y D R ++ + Q+ Q+ +I A++ Sbjct: 13 TFLDAQAAELGAARNTLLAYGRDLRNVTTWM------RTKGQSFAQMQQADIEAYLISCD 66 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + + + R LS IK ++ + ++ L ++ + SLP+ L+E + VD Sbjct: 67 AEGLSRATRARRLSAIKQIYRFAFEEGWRQDNPALQIKGPGRDKSLPKTLDEAE----VD 122 Query: 140 NVLLHTSHETKWIDA---RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 LL + E +A RN+ ++ LLY G+R+SE +SL D + L I GKG K Sbjct: 123 R-LLAAAREVGRTEADRLRNTCLMELLYATGMRVSELVSLPVSATRGDPNMLLILGKGGK 181 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF-----------QR 245 R+VPL P R A+ + + L L R +G + +F R Sbjct: 182 ERMVPLSPPARAALGAW-------IVLRDSLEDKREGQGHKASRFLFPSRSKEGHLTRHR 234 Query: 246 Y---IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + I++L G+ P T HTLRH+FATHLL NG DLR+IQ++LGH ++TT+IYT+V Sbjct: 235 FYLLIKELAVAGGVSPEKVTPHTLRHAFATHLLQNGADLRAIQALLGHADIATTEIYTHV 294 Query: 302 NSKNGGDWMMEIYDQTHPSITQKDK 326 + E+ Q HP + D+ Sbjct: 295 LDAR----LAELVHQHHPLAAKDDE 315 >gi|306812204|ref|ZP_07446402.1| site-specific tyrosine recombinase XerD [Escherichia coli NC101] gi|305854242|gb|EFM54680.1| site-specific tyrosine recombinase XerD [Escherichia coli NC101] Length = 298 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 91/304 (29%), Positives = 157/304 (51%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +E+ L++ TL +Y R + + + +T+ T + +++A +++R Sbjct: 9 EQFLDALWLEKNLAENTLNAYR---RDLSMMVEWLHHRGLTLATAQS---DDLQALLAER 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K + ++ + K LP+ L+E Q L+ Sbjct: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L+ ++ R+ A+L +LY GLR+SE + LT +I Q +R+ GKG+K R Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLPQGVVRVIGKGNKER 177 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VPL + Y + P+ LN ++I + LF R + + F I+ G+ Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292 Query: 316 QTHP 319 Q HP Sbjct: 293 QHHP 296 >gi|332160506|ref|YP_004297083.1| site-specific tyrosine recombinase XerD [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607025|emb|CBY28523.1| tyrosine recombinase XerD [Yersinia enterocolitica subsp. palearctica Y11] gi|325664736|gb|ADZ41380.1| site-specific tyrosine recombinase XerD [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863449|emb|CBX73568.1| tyrosine recombinase xerD [Yersinia enterocolitica W22703] Length = 299 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 90/303 (29%), Positives = 153/303 (50%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ER L++ TL SY D +L + + + + ++++F+++R Sbjct: 10 EQFLDALWLERNLAENTLASYRLDLHALSGWLEHHDSDLLRAGS------QDLQSFLAER 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K+ + + + K LP+ L+E Q Sbjct: 64 IEGGYKSTSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQV---- 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + LL++ + ++ R+ A+L +LY GLR+SE + LT ++ Q +R+ GKG+K R Sbjct: 120 -DALLNSPNVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKER 178 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL I Y + P+ +N LF R + + F I+ G+ Sbjct: 179 LVPLGEEAVYWIENYMEYGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGID 238 Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + ++ Q Sbjct: 239 SERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKLLHQQ 294 Query: 317 THP 319 HP Sbjct: 295 HHP 297 >gi|170719429|ref|YP_001747117.1| site-specific tyrosine recombinase XerC [Pseudomonas putida W619] gi|254799352|sp|B1J1V8|XERC_PSEPW RecName: Full=Tyrosine recombinase xerC gi|169757432|gb|ACA70748.1| tyrosine recombinase XerC [Pseudomonas putida W619] Length = 299 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 94/313 (30%), Positives = 154/313 (49%), Gaps = 35/313 (11%) Query: 17 ERQ--NWLQNLEIERGLSKLTLQSYECDTRQFLIFL---AFYTEEKITIQTIRQLSYTEI 71 ERQ + +L ER +S+ TL +Y D + + + + IQ +RQL Sbjct: 2 ERQLEAYCAHLRNERQVSEHTLLAYRRDLEKVIEYCNTQGIAGWGALQIQQLRQL----- 56 Query: 72 RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131 I+++ Q RSL R LS ++ +YL + + + K LP+ L+ Sbjct: 57 ---IARQHHQGQSSRSLARLLSAVRGLYRYLNREGLCQHDPASGLSAPKGERRLPKVLDT 113 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 +AL L+D + + +I R+ AIL L Y GLR+SE +L +++ +++ Sbjct: 114 DRALQLLDGGV-----DDDFIARRDQAILELFYSSGLRLSELTNLDLEHLDLAAGLVQVL 168 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 GKG K R++P+ R+A+ ++ L P D +F +G L P Q + Sbjct: 169 GKGGKARVLPVGRKAREAMQQWLRLRGIGGPRDG------AVFISRQGNRLGPRAIQMRV 222 Query: 248 RQL-RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 + R LG L H LRHSFA+H+L + DLR++Q +LGH +STTQIYT+++ ++ Sbjct: 223 KAAGERELGQHLHP--HMLRHSFASHVLESSQDLRAVQEMLGHADISTTQIYTHLDFQH- 279 Query: 307 GDWMMEIYDQTHP 319 + +YD HP Sbjct: 280 ---LAAVYDSAHP 289 >gi|29840081|ref|NP_829187.1| site-specific tyrosine recombinase XerC [Chlamydophila caviae GPIC] gi|75539745|sp|Q823T9|XERC_CHLCV RecName: Full=Tyrosine recombinase xerC gi|29834429|gb|AAP05065.1| site-specific recombinase, phage integrase family [Chlamydophila caviae GPIC] Length = 312 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 85/259 (32%), Positives = 133/259 (51%), Gaps = 29/259 (11%) Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 +R ++ + + R++KR LS IKSF +Y K +I E + + LP + Sbjct: 71 VRLYVLELMQENKAKRTIKRRLSAIKSFSQYCIKNRIIFEDPTETIHGPRLPKELPSPIT 130 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 +Q +L+ T +K+ R+ +L L Y GLRISE +++ +I + + +RI Sbjct: 131 YEQV-----EILMATPDLSKYTGFRDRCLLELFYSSGLRISEIVAINHWDIDFNSNLIRI 185 Query: 191 QGKGDKIRIVPLLPSVRKAILEYY----------DLCPFDLNLNIQLPLFRGIRGKPLNP 240 +GKG K R+VP+ P + + +Y D F LN + R I K Sbjct: 186 RGKGKKERLVPMTPHAAQWLQQYLHHPERAHVEQDPQAFFLNRFGKRLTTRSIDRK---- 241 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 FQ+Y+RQ GL S T HT+RH+ ATH L NG DL++IQ++LGH L TT IYT+ Sbjct: 242 --FQKYLRQS----GLSGSITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTH 295 Query: 301 VNSKNGGDWMMEIYDQTHP 319 V+ K + ++++HP Sbjct: 296 VSMK----LKKQTHEESHP 310 >gi|77461722|ref|YP_351229.1| site-specific tyrosine recombinase XerC [Pseudomonas fluorescens Pf0-1] gi|123602828|sp|Q3K4R6|XERC_PSEPF RecName: Full=Tyrosine recombinase xerC gi|77385725|gb|ABA77238.1| tyrosine recombinase [Pseudomonas fluorescens Pf0-1] Length = 299 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 92/306 (30%), Positives = 149/306 (48%), Gaps = 21/306 (6%) Query: 17 ERQ--NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 ERQ + ++L ER +S TL +Y D + L + K I + + L +R+ Sbjct: 2 ERQLDAYCEHLRSERQVSPHTLSAYRRDLDKVLGWCI-----KQNIGSWQALDIQRLRSL 56 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 I++ Q RSL R LS ++ YL + + + K LP+ L+ +A Sbjct: 57 IARLHAQGQSSRSLARLLSAVRGLYHYLNRECLCDHDPATGLAPPKGERRLPKTLDTDRA 116 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 L L++ + E ++ R+ AIL L Y GLR+SE L + +++ GKG Sbjct: 117 LQLLEGAV-----EDDFLARRDQAILELFYSSGLRLSELTGLNLDQLDLADGMVQVLGKG 171 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR-QLRRY 253 K R++P+ R+A+ ++ L L +F +G+ L P Q ++ R Sbjct: 172 SKTRLLPVGKKAREALEQWLPLRA--LTNPSDDAVFVSQQGRRLGPRAIQVRVKLAGERE 229 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 LG L H LRHSFA+HLL + DLR++Q +LGH + TTQIYT+++ ++ + + Sbjct: 230 LGQNLHP--HMLRHSFASHLLESSQDLRAVQELLGHSDIKTTQIYTHLDFQH----LAAV 283 Query: 314 YDQTHP 319 YD HP Sbjct: 284 YDSAHP 289 >gi|260588143|ref|ZP_05854056.1| integrase/recombinase XerD [Blautia hansenii DSM 20583] gi|260541670|gb|EEX22239.1| integrase/recombinase XerD [Blautia hansenii DSM 20583] Length = 294 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 90/306 (29%), Positives = 149/306 (48%), Gaps = 20/306 (6%) Query: 17 ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 E Q ++++L RG S+ T SYE D ++ FL ++ I Q+S + ++I Sbjct: 4 EIQEFIEHLHNTRGTSRNTEVSYERDLKKLEQFL-----KQEGILEWHQVSAVLLNSYIM 58 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + S+ RS++ I++F +YL +R+ E+ ++ K P L Sbjct: 59 YLERKNFAASSISRSVASIRAFFQYLCQRECWRENPAEGLKAPKIEKKAPGILT------ 112 Query: 137 LVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 VD V LL E R+ A+L LLY G+R+SE + LT +++ L + Sbjct: 113 -VDEVDLLLSQPKENTAKGVRDRAMLELLYATGIRVSELIHLTLRDVNLKLGYLTC-SQS 170 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 ++ R++P + + A+ Y +L N LF GK ++ F + ++ Sbjct: 171 ERERVIPFGATAKTAVEAYMAWARVELLGENSSEWLFVNCSGKSMSRQGFWKILKGYAVS 230 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ T HTLRHSFA HL+ NG DL+S+Q ++GH +STTQIY N+N + ++ Sbjct: 231 AGIQQDITPHTLRHSFAAHLVQNGADLKSVQEMMGHSDISTTQIYMNMNVNK----IRDV 286 Query: 314 YDQTHP 319 Y + HP Sbjct: 287 YMKAHP 292 >gi|238792839|ref|ZP_04636470.1| Tyrosine recombinase xerD [Yersinia intermedia ATCC 29909] gi|238727947|gb|EEQ19470.1| Tyrosine recombinase xerD [Yersinia intermedia ATCC 29909] Length = 299 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 92/303 (30%), Positives = 155/303 (51%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ER L++ TL SY D +L + + + + ++++F+++R Sbjct: 10 EQFLDALWLERNLAENTLASYRLDLHALTGWLEHHGSDLLRAGS------QDLQSFLAER 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K+ + + + K LP+ L+E Q V Sbjct: 64 IEGGYKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQ----V 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D LL++ + ++ R+ A+L +LY GLR+SE + LT ++ Q +R+ GKG+K R Sbjct: 120 DR-LLNSPNVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKER 178 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL I Y + P+ +N LF R + + F I+ G+ Sbjct: 179 LVPLGEEAVYWIENYMEHGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGID 238 Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Q Sbjct: 239 SERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQQ 294 Query: 317 THP 319 HP Sbjct: 295 HHP 297 >gi|299771869|ref|YP_003733895.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1] gi|298701957|gb|ADI92522.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1] Length = 306 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 129/234 (55%), Gaps = 9/234 (3%) Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 RS+ R LS ++ F K+L+++K+ +++ + + K +LP+ L+E+ L+ ++T Sbjct: 80 RSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVEALIQAPDINT 139 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 + + R+ A+ +LY CGLR+SE L+L + I Q LR+ GKG+K R+VPL Sbjct: 140 A-----LGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRVTGKGNKERLVPLGQF 194 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + + Y L + LF G ++ F I++ + + HTL Sbjct: 195 ACEWVERYLHNARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAELSPHTL 254 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 RH+FATHLL++G DLR +Q +LGH LSTTQIYT+V M +++++ HP Sbjct: 255 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR----MQQLHEKHHP 304 >gi|251796343|ref|YP_003011074.1| tyrosine recombinase XerD [Paenibacillus sp. JDR-2] gi|247543969|gb|ACT00988.1| tyrosine recombinase XerD [Paenibacillus sp. JDR-2] Length = 296 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 91/303 (30%), Positives = 143/303 (47%), Gaps = 16/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++++Q L ER LS TL+SY D + L +L + + LS+ +R S R Sbjct: 6 ESFIQYLMNERALSSSTLESYGRDLQGLLDYLEQQSIANVADVHRHHLSHYLLRLKESGR 65 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 +T + R ++ I++F YL + + + + K+ P L+ + A Sbjct: 66 KTSTVS-----RHIASIRAFFHYLAVNGYIQLNPAIYIESPKQEKKEPSVLSMENA---- 116 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 +LL T R+ A+L LLY G+R+SE +SL ++ + +R G G K R Sbjct: 117 -GLLLETPQPVTAAGKRDKAMLELLYATGIRVSELISLNVDSVNSQLNIIRCVGSGMKER 175 Query: 199 IVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 I+P A+ +Y +L + LF G + F + +++ + G+ Sbjct: 176 IIPFGRMAAAALDDYLQNGRAELLRQSEDEPALFLNQLGTRMTRQGFWKMVKKYAKEAGI 235 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 T HTLRHSFA HLL NG DLR++Q +LGH +STTQ YT V+ M +IY Sbjct: 236 SEEITPHTLRHSFAAHLLENGADLRAVQELLGHADISTTQRYTKVSKVK----MKDIYSN 291 Query: 317 THP 319 HP Sbjct: 292 AHP 294 >gi|168823065|ref|ZP_02835065.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|204927994|ref|ZP_03219194.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204322316|gb|EDZ07513.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205340622|gb|EDZ27386.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320087473|emb|CBY97238.1| Tyrosine recombinase xerD [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 298 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 92/304 (30%), Positives = 154/304 (50%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ER L++ TL +Y D + +L + T Q +++ +++R Sbjct: 9 EQFLDALWLERNLAENTLSAYRRDLSMVVAWLHHRGKTLATAQA------DDLQTLLAER 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ F ++L + K + + + K LP+ L+E Q L+ Sbjct: 63 VEGGYKATSSARLLSAMRRFFQHLYREKCREDDPSAQLASPKLPQRLPKDLSEAQVERLL 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L+ ++ R+ A+L +LY GLR+SE + LT +I Q +R+ GKG+K R Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VPL + Y + P+ LN ++I + LF R + + F I+ G+ Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292 Query: 316 QTHP 319 Q HP Sbjct: 293 QHHP 296 >gi|255036556|ref|YP_003087177.1| tyrosine recombinase XerD [Dyadobacter fermentans DSM 18053] gi|254949312|gb|ACT94012.1| tyrosine recombinase XerD [Dyadobacter fermentans DSM 18053] Length = 298 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 98/310 (31%), Positives = 152/310 (49%), Gaps = 24/310 (7%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 +K +N+L+ +ER LS ++++Y D + +L K + R + + AF Sbjct: 6 IKHFKNYLR---LERSLSGNSVEAYVRDVEKLEEYLEL---SKADLAPAR-VQEEHLSAF 58 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 + + S R LSGIK+F KYL TE + L +S LPR L + + Sbjct: 59 LKYIAELGLAAHSQARMLSGIKAFFKYLLLENEITE----DPTELLESPRLPRKLPDVLS 114 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 ++ +L H T RN AI+ +LY GLR+SE L N D LRI GKG Sbjct: 115 YEEIETMLSAIDHSTPE-GTRNRAIMEVLYSSGLRVSELTDLQLTNCHFDIGFLRILGKG 173 Query: 195 DKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 DK+R+VP+ K Y D + P + +I +F RG L+ + I+ Sbjct: 174 DKMRLVPIGREAIKYTQIYLDHIRNDIAPQKGSEDI---VFLNRRGGQLSRVMIFLMIKD 230 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 G+ + + HT RHSFATHL+ G LR++Q +LGH ++TT+IYT+++ D+ Sbjct: 231 TAEKAGIHKNVSPHTFRHSFATHLIEGGASLRAVQEMLGHESITTTEIYTHLDR----DY 286 Query: 310 MMEIYDQTHP 319 + +I + HP Sbjct: 287 LRQIITEFHP 296 >gi|157148431|ref|YP_001455750.1| site-specific tyrosine recombinase XerD [Citrobacter koseri ATCC BAA-895] gi|157085636|gb|ABV15314.1| hypothetical protein CKO_04256 [Citrobacter koseri ATCC BAA-895] Length = 298 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 91/304 (29%), Positives = 156/304 (51%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ER L++ TL +Y D + +L + T+Q+ +++ +++R Sbjct: 9 EQFLDALWLERNLAENTLSAYRRDLSMVVEWLHHRGKTLATVQS------DDLQTLLAER 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS + F ++L + K + + + K LP+ L+E Q L+ Sbjct: 63 MDGGYKATSSARLLSATRRFFQHLYREKFREDDPSAQLASPKLPQRLPKDLSEAQVERLL 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + ++ ++ R+ A+L +LY GLR+SE + LT +I Q +R+ GKG+K R Sbjct: 123 QSPVVDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VPL + Y + P+ LN ++I + LF R + + F I+ G+ Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292 Query: 316 QTHP 319 Q HP Sbjct: 293 QHHP 296 >gi|262166461|ref|ZP_06034198.1| tyrosine recombinase XerD [Vibrio mimicus VM223] gi|262170635|ref|ZP_06038313.1| tyrosine recombinase XerD [Vibrio mimicus MB-451] gi|261891711|gb|EEY37697.1| tyrosine recombinase XerD [Vibrio mimicus MB-451] gi|262026177|gb|EEY44845.1| tyrosine recombinase XerD [Vibrio mimicus VM223] Length = 302 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 94/304 (30%), Positives = 155/304 (50%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + +ERGL++ T+ SY D + L ++A + + + I S++ ++ + S Sbjct: 13 EQFLDAMWLERGLAENTVASYRNDLSKLLEWMA---QHQYRLDFI---SFSGLQEYQSWL 66 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q S R LS I+ +YL + K+ + + + K LP+ L E Q Sbjct: 67 SEQNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLISPKLPTRLPKDLTEAQV---- 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL I+ R+ A+L LLY GLR++E +SLT +N+ Q +R+ GKG K R Sbjct: 123 -EALLSAPDPQTPIELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVIGKGGKER 181 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VP+ + + I E + L L Q +F RG+ + F I+ + Sbjct: 182 LVPMGENAIEWI-ETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAEI 240 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + H LRH+FATHLL+ G DLR +Q +LGH LSTTQIYT+V ++ + ++++ Sbjct: 241 DVELLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHN 296 Query: 316 QTHP 319 + HP Sbjct: 297 EHHP 300 >gi|311234212|gb|ADP87066.1| integrase family protein [Desulfovibrio vulgaris RCH1] Length = 490 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/197 (40%), Positives = 109/197 (55%), Gaps = 7/197 (3%) Query: 124 SLPRALNEKQAL-TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 +LP ++ L T V+++ T H + I R+ A+ LLYG GLRISEAL L + Sbjct: 246 TLPAGSTSRKPLSTAVESMSGDTLH-AEAIRRRDLALAELLYGSGLRISEALGLDVLDAD 304 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242 +R+ GKG K R+ PL + A+ E+ L + LF G RG L+ Sbjct: 305 PSAGVVRVLGKGSKERMSPLSDTSVDALREWLHFR-HHLASEGERALFVGARGDRLDRRQ 363 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 R I L R GLP S + H LRHSFATHLL G DLRS+Q +LGH RL+TTQ YT++ Sbjct: 364 ATRIIDALCRRAGLPQSVSPHGLRHSFATHLLEAGADLRSVQELLGHARLATTQRYTHLT 423 Query: 303 SKNGGDWMMEIYDQTHP 319 + ++E+YD+ HP Sbjct: 424 LAH----LIEVYDKAHP 436 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L ++E+E+G S T+ +Y D QF L T E + ++ ++ ++++ Sbjct: 65 FLAHVELEKGYSPATVTAYGTDLMQFHGVL---TAEGFGLDAPEDVTRRHVQRYLAELHR 121 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + S+ R LS +++F +Y+ + + T + + N ++ PR LN Q L+D Sbjct: 122 LRTARSSVARKLSALRAFFRYMLRLRRVTADPVAAVHNPRQEKRQPRTLNVDQVFALLDT 181 >gi|46580471|ref|YP_011279.1| phage integrase family site specific recombinase [Desulfovibrio vulgaris str. Hildenborough] gi|46449890|gb|AAS96539.1| site-specific recombinase, phage integrase family [Desulfovibrio vulgaris str. Hildenborough] Length = 474 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/197 (40%), Positives = 109/197 (55%), Gaps = 7/197 (3%) Query: 124 SLPRALNEKQAL-TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 +LP ++ L T V+++ T H + I R+ A+ LLYG GLRISEAL L + Sbjct: 230 TLPAGSTSRKPLSTAVESMSGDTLH-AEAIRRRDLALAELLYGSGLRISEALGLDVLDAD 288 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242 +R+ GKG K R+ PL + A+ E+ L + LF G RG L+ Sbjct: 289 PSAGVVRVLGKGSKERMSPLSDTSVDALREWLHFR-HHLASEGERALFVGARGDRLDRRQ 347 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 R I L R GLP S + H LRHSFATHLL G DLRS+Q +LGH RL+TTQ YT++ Sbjct: 348 ATRIIDALCRRAGLPQSVSPHGLRHSFATHLLEAGADLRSVQELLGHARLATTQRYTHLT 407 Query: 303 SKNGGDWMMEIYDQTHP 319 + ++E+YD+ HP Sbjct: 408 LAH----LIEVYDKAHP 420 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L ++E+E+G S T+ +Y D QF L T E + ++ ++ ++++ Sbjct: 49 FLAHVELEKGYSPATVTAYGTDLMQFHGVL---TAEGFGLDAPEDVTRRHVQRYLAELHR 105 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + S+ R LS +++F +Y+ + + T + + N ++ PR LN Q L+D Sbjct: 106 LRTARSSVARKLSALRAFFRYMLRLRRVTADPVAAVHNPRQEKRQPRTLNVDQVFALLDT 165 >gi|283787512|ref|YP_003367377.1| tyrosine recombinase [Citrobacter rodentium ICC168] gi|282950966|emb|CBG90643.1| tyrosine recombinase [Citrobacter rodentium ICC168] Length = 298 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 90/299 (30%), Positives = 146/299 (48%), Gaps = 19/299 (6%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L+ L +ER LS +TL++Y+ RQ +A E +++ +Q +R+F + R + Sbjct: 12 LRYLGVERQLSPITLKNYQ---RQLDAIIALAAEA--GLESWQQCDAAMVRSFAVRSRRK 66 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 +G SL LS ++SF ++ + + K LP+ ++ L+D Sbjct: 67 GLGPASLALRLSALRSFFDWIVSEGKLNANPAKGVSAPKAPRHLPKNIDVDDVNRLLDID 126 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 L + R+ A+L ++YG GLR+SE + L ++ D + + GKG K R +P Sbjct: 127 L------NDPLAVRDRAMLEVMYGAGLRLSELVGLDINHLDLDTGEVWVMGKGSKERRLP 180 Query: 202 LLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 + + I + DL F N LF GK ++ Q+ + GL Sbjct: 181 IGRNAVAWIEHWLDLRGLFGCEEN---ALFLSKLGKRISARNVQKRFAEWGIKQGLNSHV 237 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ + +YD HP Sbjct: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHP 292 >gi|258508408|ref|YP_003171159.1| tyrosine recombinase XerD [Lactobacillus rhamnosus GG] gi|257148335|emb|CAR87308.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus GG] Length = 299 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 90/308 (29%), Positives = 151/308 (49%), Gaps = 20/308 (6%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 ++K + + L +ER S T+ +Y D ++F FL + ++ +++ Sbjct: 1 MMKPLAAFQEYLTVERQYSPETVTAYLNDIQEFQAFL----KANGGFTDFSKVDDLDVQT 56 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEK 132 +++ Q + S+ R +S ++SF +YL + + + N + LKK + LP+ E Sbjct: 57 YLTDLNKQALARTSIARKISSLRSFYRYLVRIDVV-KRNPFELVELKKQHHHLPQFFYEA 115 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + L V T +D RN A+L +LYG G+R+SE +LT + + L I G Sbjct: 116 EIQELFKTVEGKTP-----LDQRNRALLEVLYGTGIRVSECANLTLNQVDFNTGLLLIHG 170 Query: 193 KGDKIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 KG+K R VP ++A+ Y + D+ +F G+P+ + Sbjct: 171 KGNKDRYVPFGRYAQRALQTYLKDGRQTLMNKRDVQHRF---VFVNQYGRPITARGIEYI 227 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 + QL + L + H LRHSFATH+L +G DLR++Q +LGH LSTTQIYT+V + Sbjct: 228 LDQLIKQTSLIANIHPHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHL 287 Query: 307 GDWMMEIY 314 + M+ Y Sbjct: 288 KNEYMKYY 295 >gi|167763873|ref|ZP_02436000.1| hypothetical protein BACSTE_02254 [Bacteroides stercoris ATCC 43183] gi|167697989|gb|EDS14568.1| hypothetical protein BACSTE_02254 [Bacteroides stercoris ATCC 43183] Length = 316 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 90/289 (31%), Positives = 147/289 (50%), Gaps = 20/289 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + Q L++E+ LS TL +Y D ++ L FL E I I + + +++ F + Sbjct: 18 RKYQQYLKLEKALSPNTLDAYMTDLQKLLHFL---EGENIEIPDV---TPDDLQRFAAGL 71 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 I RS R LSGIKSF +L + + + L + + L E + + Sbjct: 72 HDIGIHPRSQARILSGIKSFFHFL----VIADYQEADPSELLEGPKIGFRLPEVLTVEEI 127 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D ++ E K RN AIL LY CGLR+SE +L ++ ++ ++++GKG K R Sbjct: 128 DRIISTVDMEKKE-GQRNRAILETLYSCGLRVSELCNLKISDLYFEEGFIKVEGKGGKQR 186 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLN-----IQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 +VP+ P K I ++ D NL + +F G ++ + I++L Sbjct: 187 LVPISPRAIKEIKYWFA----DRNLGKIKKGYEDYVFLARWGNNISRIMVFHMIKELAEK 242 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 G+ + + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ Sbjct: 243 AGITKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHID 291 >gi|238752994|ref|ZP_04614453.1| Tyrosine recombinase xerD [Yersinia rohdei ATCC 43380] gi|238708782|gb|EEQ01041.1| Tyrosine recombinase xerD [Yersinia rohdei ATCC 43380] Length = 299 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 90/303 (29%), Positives = 154/303 (50%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ER L++ TL SY D +L + + + ++++F+++R Sbjct: 10 EQFLDALWLERNLAENTLASYRLDLHALTGWLEHNGSDLLRAGS------QDLQSFLAER 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K+ + + + K LP+ L+E Q Sbjct: 64 IEGGYKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQV---- 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + LL++ + ++ R+ A+L +LY GLR+SE + LT ++ Q +R+ GKG+K R Sbjct: 120 -DALLNSPNVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKER 178 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL I Y + P+ +N + LF R + + F I+ G+ Sbjct: 179 LVPLGEEAVYWIENYMEHGRPWLINGHSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGID 238 Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Q Sbjct: 239 SERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHQQ 294 Query: 317 THP 319 HP Sbjct: 295 HHP 297 >gi|161506408|ref|YP_001573520.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867755|gb|ABX24378.1| hypothetical protein SARI_04606 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 298 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 92/304 (30%), Positives = 154/304 (50%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ER L++ TL +Y D + +L + T Q +++ +++R Sbjct: 9 EQFLDALWLERNLAENTLSAYRRDLSMVVAWLRHRGKTLATAQA------DDLQTLLAER 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ F ++L + K + + + K LP+ L+E Q L+ Sbjct: 63 VEGGYKATSSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQVERLL 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L+ ++ R+ A+L +LY GLR+SE + LT +I Q +R+ GKG+K R Sbjct: 123 QAPLIEQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VPL + Y + P+ LN ++I + LF R + + F I+ G+ Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292 Query: 316 QTHP 319 Q HP Sbjct: 293 QHHP 296 >gi|117924957|ref|YP_865574.1| tyrosine recombinase XerD subunit [Magnetococcus sp. MC-1] gi|117608713|gb|ABK44168.1| tyrosine recombinase XerD subunit [Magnetococcus sp. MC-1] Length = 296 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 85/302 (28%), Positives = 151/302 (50%), Gaps = 16/302 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L IE GL+ TL +Y D F A +T+ I++ E +I + Sbjct: 8 ERFLDELLIEHGLAANTLIAYRRDLDALRSFCA---SRNLTLPEIQRQDVLE---YIGEL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + ++ R LS ++ ++L + I +E + K LP L+E + Sbjct: 62 AQKSLTPSTVARKLSAMRRLFRHLVDKGIRSEDPTGGVYRPKPQRKLPNTLSEAET---- 117 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL+ + + R++A+L L+Y GLR+SE ++LT + ++ +R+ GKG+K R Sbjct: 118 -EALLYAPDTSTELGMRDAAMLELMYATGLRVSELVTLTLDGLDEENGFVRVIGKGNKER 176 Query: 199 IVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 IVP+ + + ++ Y + L LF RG + F +++ + Sbjct: 177 IVPMGEAATEMVIRYRHSARQVLLKGGRCNDLFLSNRGAAMTRHNFWHIVKRYAYEANIM 236 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + H +RH+FATHLL++G DLR++Q +LGH +STT+IYT+V + + +++DQ Sbjct: 237 KPLSPHGIRHAFATHLLNHGADLRAVQMMLGHADISTTEIYTHVANAR----LKKLHDQL 292 Query: 318 HP 319 HP Sbjct: 293 HP 294 >gi|254501286|ref|ZP_05113437.1| tyrosine recombinase XerD [Labrenzia alexandrii DFL-11] gi|222437357|gb|EEE44036.1| tyrosine recombinase XerD [Labrenzia alexandrii DFL-11] Length = 307 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 93/308 (30%), Positives = 142/308 (46%), Gaps = 19/308 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +N+L+ L ERG ++ TL Y D F FL + + + I ++S Sbjct: 8 ENFLEMLAAERGAAENTLAGYRRDLEDFSDFLGR--------TKLAEANSDHISGYMSDL 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + S R LS +K F K+L + + KK SLP+ L+ + L+ Sbjct: 60 TRRGFAETSQARRLSALKQFYKFLYSEGSRQDDPTRTLSAPKKRGSLPKVLSMDEVDRLI 119 Query: 139 DNV-----LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 + + H S R ++ +LY GLR+SE ++L + D + I+GK Sbjct: 120 ETARQQTKVSHKSAAAALRAQRMYTLIEVLYATGLRVSELVALPVTAALRDARLIEIKGK 179 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRR 252 G K R+VPL + + A+ Y L + LF G L F R ++ L Sbjct: 180 GGKERLVPLSHAAQSAMKMYVGLRSAEGAYENSPWLFPSHGGSGHLTRQHFGRDLKDLAI 239 Query: 253 YLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 GL S + H LRH+FA+HLL NG DLR +Q +LGH +STTQIYT+V + + Sbjct: 240 AAGLDASKVSPHVLRHAFASHLLQNGADLRVVQQLLGHADISTTQIYTHVLDER----LR 295 Query: 312 EIYDQTHP 319 E+ + HP Sbjct: 296 ELVETAHP 303 >gi|212636945|ref|YP_002313470.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella piezotolerans WP3] gi|212558429|gb|ACJ30883.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella piezotolerans WP3] Length = 300 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 92/300 (30%), Positives = 145/300 (48%), Gaps = 16/300 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +L +GLS TL +Y D R F +++ + + S ++R +++ R Sbjct: 14 FLDHLWSTKGLSDNTLSAYRTDLRHF------DRHQQLKGLKLVESSQFDVRDYLATRFD 67 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + S R +S ++ F YL K + + + + K + LP +L+E +D Sbjct: 68 KGFAKTSSARMMSSLRRFFGYLVVNKQISTDPMALLESPKLARKLPDSLSEDD----IDR 123 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LL I+ R+ A+L LLY GLR+SE + LT + + Q +RI GKG K R+V Sbjct: 124 -LLSEPQADDPIECRDKAMLELLYATGLRVSELVGLTMEQLSLRQGLVRIVGKGGKERLV 182 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 PL + Y +L Q LF R + + F I+ + Sbjct: 183 PLGELAVGEVENYLKFARVELLKGKQSDVLFPSKRAQQMTRQTFWHRIKLYALRANISTE 242 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + + ++ + HP Sbjct: 243 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVATAR----LASLHSEHHP 298 >gi|168702641|ref|ZP_02734918.1| integrase/recombinase [Gemmata obscuriglobus UQM 2246] Length = 321 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 92/318 (28%), Positives = 158/318 (49%), Gaps = 29/318 (9%) Query: 6 LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65 L +IV+F ++++Q+ ERGL++ TL +Y D ++ ++ E++ + Sbjct: 7 LADIVAF------RDYIQS---ERGLAENTLLAYGRDLARYAHWV-----EQVQLPDYTH 52 Query: 66 LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK--KRKITTESNILNMRNLKKSN 123 + + A+++ +++ S+ R L +K F ++L+ +R T N+L+ NL + Sbjct: 53 PTLKHLAAYVAFLHEEQLAAPSIARHLVALKMFYRFLQLEERASATTVNLLSSPNLWER- 111 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 +P+ L TL+ R+ A+L +LY G R SE ++L ++ Sbjct: 112 -VPQVLPPPAVETLIT-----APQPGDRFHLRDRAMLEVLYATGCRASEVVNLKLNDVYL 165 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPG 241 D + GKG K R+VPL A+ Y + P +F G+PL Sbjct: 166 DSGFCKCVGKGSKQRVVPLNRHAVTALRAYLGGGVDEGGRPAAGPEVVFTSKTGRPLTRI 225 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +++ + GLP + + HTLRHSFATHLLS G DLR++Q +LGH ++TTQIYT+V Sbjct: 226 HLWALVKKYCKRAGLPKTVSPHTLRHSFATHLLSGGADLRTVQELLGHASIATTQIYTHV 285 Query: 302 NSKNGGDWMMEIYDQTHP 319 + D + ++ Q HP Sbjct: 286 DR----DRLKALHRQFHP 299 >gi|221134095|ref|ZP_03560400.1| tyrosine recombinase [Glaciecola sp. HTCC2999] Length = 304 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 86/303 (28%), Positives = 150/303 (49%), Gaps = 21/303 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q + + L++ER Y T+ I ++ +T++ L+ +++ + Sbjct: 17 QAFAEQLKVER--------QYSIHTQSAYINHILVCKDLLTLKKWSSLTVEQVKRMVGLS 68 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + RS+ LS ++ F +L ++ T++ + K LP+ L+ +Q L+ Sbjct: 69 KKAGLSARSIALRLSALRQFCHFLVEQHQLTQNPAEAVNAPKMGKPLPKHLHVEQLEGLL 128 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 N + HE AR+ A+ L+YGCGLR+SE L +++DD L + GKG K R Sbjct: 129 -NFTPESVHE-----ARDKAMFELVYGCGLRLSEVTGLNLLDVLDDH-ILNVNGKGGKQR 181 Query: 199 IVPLLPSVRKAILEYYDL-CPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +P+ +A+ ++ F + P LF RG L + + QL G+ Sbjct: 182 RLPIGEHAWRAVQDWLLWRVQFITSAAPDEPALFLSQRGGRLGNRQVAKRLTQLATKQGI 241 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRHSFATH+L + GDLR++Q +LGH L+TTQ+YT+++ ++ + +YD Sbjct: 242 DTHISPHKLRHSFATHVLESSGDLRAVQELLGHANLATTQVYTHLDFQH----LAGVYDN 297 Query: 317 THP 319 HP Sbjct: 298 AHP 300 >gi|42519036|ref|NP_964966.1| integrase/recombinase CodV [Lactobacillus johnsonii NCC 533] gi|41583323|gb|AAS08932.1| probable integrase/recombinase CodV [Lactobacillus johnsonii NCC 533] Length = 307 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 97/316 (30%), Positives = 149/316 (47%), Gaps = 18/316 (5%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L+K+ Q++L ER SK T+ SY D + F +E Q+ ++ Sbjct: 7 KLIKQFQDYLN---YERNYSKNTVNSYLNDLNEAKEFF----KENGGFSGWDQVKSRDVE 59 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F+ TQ + R +S ++SF ++L KR++ + + LP+ EK Sbjct: 60 IFLQNLATQNRSRTTQARKMSSLRSFYRFLVKREVLDNDPMQTISLRLGEKKLPQFFYEK 119 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + + D++ H + RN A+ L Y G+R+SE SL I D + + G Sbjct: 120 EMRQVFDSLAGHEK-----LVVRNRAMFELFYATGMRLSEMASLKLDQIDFDLKIILVHG 174 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQL 250 KG+K R VP A+ EY D P L N +F RG+ L + ++Q+ Sbjct: 175 KGNKDRYVPFGKDAANALKEYCDEGRPALLGKNEDRGYVFLNNRGQKLTGRGIEYIMQQV 234 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ H LRHSFAT +L+NG DLRS+Q +LGH LSTTQIYT+V K+ + Sbjct: 235 FIKAGVGGKVHPHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKH----L 290 Query: 311 MEIYDQTHPSITQKDK 326 Y + P +KD+ Sbjct: 291 QADYQKFFPRKDKKDE 306 >gi|308176942|ref|YP_003916348.1| tyrosine recombinase subunit XerD [Arthrobacter arilaitensis Re117] gi|307744405|emb|CBT75377.1| tyrosine recombinase subunit XerD [Arthrobacter arilaitensis Re117] Length = 307 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 93/308 (30%), Positives = 152/308 (49%), Gaps = 16/308 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK- 77 + +LQ+L IERGL++ TL SY D +++ + E+ Q I +L+ + +S+ Sbjct: 10 KRYLQHLAIERGLAENTLASYRRDLLRYVDTMQAAGVEQP--QKITELAISGYLQDLSRG 67 Query: 78 -RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + + + RS+ R I+ KY + I + ++ SLP+A++ Q + Sbjct: 68 NEKHKALSARSVARHSVAIRQLHKYWELEGICVPNPAREIQPPAIGQSLPKAISIDQVTS 127 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQGKGD 195 ++++V + T R+ AIL LY G RISE + L ++ Q + +R+ GKG Sbjct: 128 ILESVSIETP-----AGLRDRAILEFLYSTGARISEVVDLDVDDLHFAQDAVVRLFGKGS 182 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRRY 253 K R+VP+ ++A+ +Y L + LF RG L+ + + Sbjct: 183 KERVVPVGGYAQRAVSDYLVRARPSLAAKGKGTPALFLNQRGGRLSRQSVWLLLSKAAER 242 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ + HTLRHSFATHLL G D+R +Q +LGH ++TTQIYT V D + E Sbjct: 243 AGITTEVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTKVTV----DSLREA 298 Query: 314 YDQTHPSI 321 Y HP + Sbjct: 299 YQLAHPRV 306 >gi|33595884|ref|NP_883527.1| site-specific tyrosine recombinase XerD [Bordetella parapertussis 12822] gi|33565963|emb|CAE36514.1| integrase/recombinase [Bordetella parapertussis] Length = 310 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 85/297 (28%), Positives = 143/297 (48%), Gaps = 14/297 (4%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEK--ITIQTIRQLSYTEIRAFISKRRTQKIG 84 +E GL+ TL +Y D F +L T ++R+ +I A+ + R + Sbjct: 22 LEDGLAANTLAAYRRDLSAFAQWLENPACHPGLATGHSLREAGKGDIEAWFAARHAESRA 81 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 + R L+ ++ F + + ++T L + K+ LP+ L+E Q L+ L Sbjct: 82 T-TANRRLAALRRFYAWALRERLTPSDPCLTLVTAKQPPRLPKTLSEAQVDALLQAPDLD 140 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLL 203 T+ R+ A+L LY GLR+SE +S+ ++ ++ +R+ GKG K R+VPL Sbjct: 141 TARGL-----RDRAMLETLYATGLRVSELVSVKALDVSLNEGVVRVVMGKGGKDRLVPLG 195 Query: 204 PSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 I Y P L + LF R +P++ F + +++ + + Sbjct: 196 AEAAHWIERYAGSARPELLGARVADALFVTARAEPMSRQAFWQLVKKYALAADIRAPLSP 255 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRH+FATHLL++G DLR +Q +LGH +STTQIYT+V + + ++ HP Sbjct: 256 HVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVACER----LKALHAAHHP 308 >gi|328955478|ref|YP_004372811.1| integrase family protein [Coriobacterium glomerans PW2] gi|328455802|gb|AEB06996.1| integrase family protein [Coriobacterium glomerans PW2] Length = 304 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 89/297 (29%), Positives = 146/297 (49%), Gaps = 22/297 (7%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 G S T ++YE R +L + + + + + L +R++++ + R++ Sbjct: 19 GCSPETARAYEGHLRAYLSW-----QRRAHLDGL-VLEVPVVRSYLADLYDARRSPRTIA 72 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 LS I+S ++L IT + M+ + LPR L ++Q L+ L T+ T Sbjct: 73 AHLSAIRSLSRWLLLEGITKTDAVATMQTPRIPTGLPRTLTQQQMEQLL--ALPDTASPT 130 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 +R++AIL LLY G RISE +L ++ +Q +R+ GKG K RIVPL + Sbjct: 131 G---SRDAAILELLYASGARISEIAALDIASLDAEQRCVRLLGKGSKERIVPLYRRALRR 187 Query: 210 ILEYYDLC-PFDLNLNI------QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 ++ Y D P + + LF RG+ ++ + R R GLP T Sbjct: 188 LVSYLDEGRPLLIRSRTLASDSDRTALFLSRRGRRMSADSLRCRFRAYARIAGLPADITP 247 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H +RH+FAT LL+ G D+RS+Q +LGH L+TTQ+YT++ + M + + HP Sbjct: 248 HAMRHTFATDLLAGGADMRSVQELLGHASLATTQLYTHLTPER----MKDALRRAHP 300 >gi|209965952|ref|YP_002298867.1| tyrosine recombinase XerD [Rhodospirillum centenum SW] gi|209959418|gb|ACJ00055.1| tyrosine recombinase XerD [Rhodospirillum centenum SW] Length = 330 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 97/310 (31%), Positives = 146/310 (47%), Gaps = 24/310 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK--R 78 +L L ERG + T +Y D R FLA + + + S ++RA++ R Sbjct: 26 FLDMLVAERGAAANTRDAYARDLRDVAAFLA----ARRGGTALDRASTDDLRAYLEHLHR 81 Query: 79 RTQKI--GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 T K R++ R LS ++ + ++L + E + K SLP+ L E Sbjct: 82 DTGKTPSAGRTVARRLSALRQYYRFLVSEGLRAEDPAAVLDGPKPGRSLPKILTEADVAL 141 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L++ E + R +A+L LLY GLR+SE + L + D L ++GKG K Sbjct: 142 LLEGAARRGGPEGR----RLTALLELLYATGLRVSELVGLPLAALTRDGRALVVRGKGGK 197 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL----NLNIQLPLF--RGIRGKPLNPGVFQRYIRQL 250 R+VPL ++A+ P+ + Q LF R G L F + +++L Sbjct: 198 ERMVPLSQPAKEALAACLPDRPYFMVPGREARQQGLLFPSRSAAGV-LTRQRFGQLMKEL 256 Query: 251 RRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 +GL P + H LRH FATHLL +G DLRS+Q +LGH + TTQIYT+V GD Sbjct: 257 ALEVGLDPGKVSPHVLRHCFATHLLDHGADLRSVQKMLGHADIGTTQIYTHVA----GDR 312 Query: 310 MMEIYDQTHP 319 + + HP Sbjct: 313 LRRTVETHHP 322 >gi|330836616|ref|YP_004411257.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374] gi|329748519|gb|AEC01875.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374] Length = 309 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 106/328 (32%), Positives = 163/328 (49%), Gaps = 29/328 (8%) Query: 6 LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65 +P +LL+E + ++L +ER LS T+ Y R+++ FL E I Sbjct: 1 MPSSAISQLLEE---YREHLLLERRLSPATVNVYVPVVREYVSFL-----ETRGIGAEEA 52 Query: 66 LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 + T FI K + +G R+L R++S ++SF ++L I + N L S L Sbjct: 53 QADTISGYFIHKGQA-GLGTRTLARNMSALRSFHRFLLLNDIRND----NPFELLDSPKL 107 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNI 181 PR L VD++L HE + DA R+ AI ++Y CGLR+SE SL ++ Sbjct: 108 PRTLPRTMDYDSVDDIL----HEMELDDAIYARRDRAIFEVIYSCGLRVSELASLRIEDY 163 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCP-FDLNLNIQLPLFRGIRGKPLN 239 + LRI GK +K RIVP+ + I EY + P F LF G+ L+ Sbjct: 164 SPESRLLRITGKRNKQRIVPVGDVAAELIDEYIISVRPAFIPKGRSSRFLFLNRYGQSLS 223 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 + + ++ +G+ HTLRHS+ATHLL G DLRS+Q +LGH + TTQIYT Sbjct: 224 RVMIWKLFKKYCMRIGV--EAKVHTLRHSYATHLLKAGADLRSVQELLGHSDIRTTQIYT 281 Query: 300 NVNSKNGGDWMMEIYDQTHPSITQKDKK 327 +V++ + + E + + HP Q + + Sbjct: 282 HVDTTD----LQEQFRRFHPDAGQSENE 305 >gi|33592631|ref|NP_880275.1| site-specific tyrosine recombinase XerD [Bordetella pertussis Tohama I] gi|33572277|emb|CAE41829.1| integrase/recombinase [Bordetella pertussis Tohama I] gi|332382048|gb|AEE66895.1| site-specific tyrosine recombinase XerD [Bordetella pertussis CS] Length = 310 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 87/281 (30%), Positives = 140/281 (49%), Gaps = 14/281 (4%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEK--ITIQTIRQLSYTEIRAFISKRRTQKIG 84 +E GL+ TL +Y D F +L T ++R+ +I A+ + R + Sbjct: 22 LEDGLAANTLAAYRRDLSAFAQWLENLACHPGLATGASLREAGKGDIEAWFAARHAESRA 81 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 + R L+ ++ F + + ++T L + K+ LP+ L+E Q L+ L Sbjct: 82 T-TANRRLAALRRFYAWALRERLTPSDPCLTLVTAKQPPRLPKTLSEAQVDALLQAPDLD 140 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLL 203 T+ R+ A+L LY GLR+SE +S+ ++ ++ +R+ GKG K R+VPL Sbjct: 141 TARGL-----RDRAMLETLYATGLRVSELVSVKALDVSLNEGVVRVVMGKGGKDRLVPLG 195 Query: 204 PSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ--LRRYLGLPLST 260 I Y P L + LF R +P++ F + +++ L + PLS Sbjct: 196 AEAAHWIERYAGSARPELLGARVADALFVTARAEPMSRQAFWQLVKKYALAADIHAPLSP 255 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 H LRH+FATHLL++G DLR +Q +LGH +STTQIYT+V Sbjct: 256 --HVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHV 294 >gi|215489139|ref|YP_002331570.1| site-specific tyrosine recombinase XerC [Escherichia coli O127:H6 str. E2348/69] gi|312969461|ref|ZP_07783663.1| tyrosine recombinase XerC [Escherichia coli 2362-75] gi|254799331|sp|B7UNC8|XERC_ECO27 RecName: Full=Tyrosine recombinase xerC gi|215267211|emb|CAS11659.1| site-specific tyrosine recombinase XerC [Escherichia coli O127:H6 str. E2348/69] gi|312286008|gb|EFR13926.1| tyrosine recombinase XerC [Escherichia coli 2362-75] gi|320197620|gb|EFW72232.1| Tyrosine recombinase XerC [Escherichia coli WV_060327] gi|325499220|gb|EGC97079.1| site-specific tyrosine recombinase XerC [Escherichia fergusonii ECD227] Length = 298 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 91/307 (29%), Positives = 154/307 (50%), Gaps = 17/307 (5%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L + + +L+ L +ER LS +TL +Y+ RQ + F +E +Q+ +Q T +R Sbjct: 3 DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIINFASEN--GLQSWQQCDVTMVR 57 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F + R + +G SL LS ++SF +L + + + K LP+ ++ Sbjct: 58 NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 L+D + + R+ A+L ++YG GLR+SE + L +++ + + + G Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 KG K R +P+ + I + DL +L + LF GK ++ Q+ + Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--NLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 GL H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ + Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285 Query: 313 IYDQTHP 319 +YD HP Sbjct: 286 VYDAAHP 292 >gi|256379909|ref|YP_003103569.1| integrase family protein [Actinosynnema mirum DSM 43827] gi|255924212|gb|ACU39723.1| integrase family protein [Actinosynnema mirum DSM 43827] Length = 325 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 85/316 (26%), Positives = 150/316 (47%), Gaps = 13/316 (4%) Query: 5 NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64 LP V+ L + ++L +ERGLS T+++Y D L+ LA T T++++ Sbjct: 20 ELPSDVATAL----DAYERHLSLERGLSPHTVRAYLGDAVALLVHLAAGTPGDATVESVD 75 Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 L +R++++ + + ++ R + ++ + + + E + + + Sbjct: 76 LLG---LRSWLAAQHAEGASRTTMARRAASARALTAWAARTGLLAEDPGPRLNAPRPHRT 132 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 LP + QA ++ + R+ A++ LLY G+R++E L ++ Sbjct: 133 LPVVVRPDQAGAALEAAAAGADQHDP-VALRDRAVVELLYASGVRVAELCGLDLDDVDYS 191 Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVF 243 Q +R+ GKG + R VP +A+ ++ DL L LF G RG L+P Sbjct: 192 QRVIRVLGKGSRERTVPFGVPAERAVRQWADLGRSALVTERSHRALFLGARGGRLDPRTA 251 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 +R + + + H LRHS ATHLL G DLR++Q +LGH L+TTQ+YT+V Sbjct: 252 RRVVHDVMGAVPGSADVGPHGLRHSAATHLLEGGADLRTVQELLGHATLATTQLYTHVTV 311 Query: 304 KNGGDWMMEIYDQTHP 319 + + I+D+THP Sbjct: 312 ER----LKAIHDRTHP 323 >gi|16761825|ref|NP_457442.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16766345|ref|NP_461960.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29143312|ref|NP_806654.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62181554|ref|YP_217971.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161615991|ref|YP_001589956.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167550072|ref|ZP_02343829.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167994107|ref|ZP_02575199.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231149|ref|ZP_02656207.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168236103|ref|ZP_02661161.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168261794|ref|ZP_02683767.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168463788|ref|ZP_02697705.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194446221|ref|YP_002042295.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194470177|ref|ZP_03076161.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194471635|ref|ZP_03077619.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194738371|ref|YP_002115993.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249597|ref|YP_002147956.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197265258|ref|ZP_03165332.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198244272|ref|YP_002217021.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387943|ref|ZP_03214555.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205353968|ref|YP_002227769.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858307|ref|YP_002244958.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213051988|ref|ZP_03344866.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425823|ref|ZP_03358573.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213646964|ref|ZP_03377017.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213857737|ref|ZP_03384708.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224584833|ref|YP_002638631.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238909843|ref|ZP_04653680.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|60416276|sp|P0A2P6|XERD_SALTY RecName: Full=Tyrosine recombinase xerD gi|60416277|sp|P0A2P7|XERD_SALTI RecName: Full=Tyrosine recombinase xerD gi|25299270|pir||AB0872 site-specific integrase/recombinase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16421595|gb|AAL21919.1| site-specific recombinase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16504127|emb|CAD02874.1| site-specific integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhi] gi|29138946|gb|AAO70514.1| site-specific integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62129187|gb|AAX66890.1| recombinase, site-specific [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161365355|gb|ABX69123.1| hypothetical protein SPAB_03791 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194404884|gb|ACF65106.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194456541|gb|EDX45380.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194457999|gb|EDX46838.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194713873|gb|ACF93094.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195633587|gb|EDX52001.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197213300|gb|ACH50697.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197243513|gb|EDY26133.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197290855|gb|EDY30209.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197938788|gb|ACH76121.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605041|gb|EDZ03586.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205273749|emb|CAR38744.1| site-specific integrase/recombinase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205324693|gb|EDZ12532.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205327977|gb|EDZ14741.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205334414|gb|EDZ21178.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205349044|gb|EDZ35675.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710110|emb|CAR34465.1| site-specific integrase/recombinase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224469360|gb|ACN47190.1| tyrosine recombinase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261248176|emb|CBG26012.1| Tyrosine recombinase xerD [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995198|gb|ACY90083.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159600|emb|CBW19119.1| Tyrosine recombinase xerD [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914065|dbj|BAJ38039.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225719|gb|EFX50773.1| Tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613442|gb|EFY10383.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621034|gb|EFY17892.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624098|gb|EFY20932.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628163|gb|EFY24952.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633282|gb|EFY30024.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636140|gb|EFY32848.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639478|gb|EFY36166.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647589|gb|EFY44078.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648773|gb|EFY45220.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653828|gb|EFY50154.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657934|gb|EFY54202.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664037|gb|EFY60236.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668952|gb|EFY65103.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673054|gb|EFY69161.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677955|gb|EFY74018.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681131|gb|EFY77164.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687939|gb|EFY83906.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322716035|gb|EFZ07606.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323131400|gb|ADX18830.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323194865|gb|EFZ80052.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196616|gb|EFZ81764.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202684|gb|EFZ87724.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207829|gb|EFZ92775.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212619|gb|EFZ97436.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214898|gb|EFZ99646.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222629|gb|EGA06994.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225092|gb|EGA09344.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230614|gb|EGA14732.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235035|gb|EGA19121.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239074|gb|EGA23124.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244568|gb|EGA28574.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247183|gb|EGA31149.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253334|gb|EGA37163.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256359|gb|EGA40095.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262465|gb|EGA46021.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267439|gb|EGA50923.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269157|gb|EGA52612.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624789|gb|EGE31134.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629082|gb|EGE35425.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332989911|gb|AEF08894.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 298 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 92/304 (30%), Positives = 154/304 (50%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ER L++ TL +Y D + +L + T Q +++ +++R Sbjct: 9 EQFLDALWLERNLAENTLSAYRRDLSMVVAWLHHRGKTLATAQA------DDLQTLLAER 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ F ++L + K + + + K LP+ L+E Q L+ Sbjct: 63 VEGGYKATSSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQVERLL 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L+ ++ R+ A+L +LY GLR+SE + LT +I Q +R+ GKG+K R Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VPL + Y + P+ LN ++I + LF R + + F I+ G+ Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292 Query: 316 QTHP 319 Q HP Sbjct: 293 QHHP 296 >gi|269959610|ref|ZP_06173991.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835668|gb|EEZ89746.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 305 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 90/303 (29%), Positives = 149/303 (49%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + +ERGLS+ TL SY D + LA+ + + I E ++++ Sbjct: 16 EQFLDAMWMERGLSENTLASYRND---LMKLLAWMEQHSYRLDFISLSGLQEYQSYLVDL 72 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 ++ S R LS I+ +Y+ + K+ + + + K LP+ ++E+Q Sbjct: 73 DYKQT---SRARMLSAIRRLFQYIHREKVRADDPSALLVSPKLPQRLPKDISEEQV---- 125 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + LL ++ R+ A+L LLY GLR++E +SLT +N+ Q +R+ GKG K R Sbjct: 126 -DALLDAPDPNDPVELRDKAMLELLYATGLRVTELVSLTMENVSLRQGVVRVTGKGGKER 184 Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ + I + L +F R + + F I+ G+ Sbjct: 185 LVPMGENAVDWIETFIQQGRSALLGETTSDVVFPSKRARQMTRQTFWHRIKYYAVIAGID 244 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL+ G DLR +Q +LGH LSTTQIYT+V ++ + +I+ Q Sbjct: 245 TDQLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIHSQ 300 Query: 317 THP 319 HP Sbjct: 301 HHP 303 >gi|313901171|ref|ZP_07834659.1| tyrosine recombinase XerC [Clostridium sp. HGF2] gi|312954129|gb|EFR35809.1| tyrosine recombinase XerC [Clostridium sp. HGF2] Length = 302 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 93/311 (29%), Positives = 153/311 (49%), Gaps = 23/311 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +LQ ++ S T +Y+ D R+F+ FL ++ I+ ++ + +I+ R Sbjct: 8 FLQYMDSLNSGSVHTRAAYQRDIREFISFL-----QEEGIEELQDADRIIVMNYIASLRE 62 Query: 81 Q-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 + ++ + ++ R LS ++SF +YL + T++ L + K++ +P L + Sbjct: 63 KPGVSGEMKNSTIARKLSSLRSFYRYLNEYVGITQNPFLYFKTPKRAKRIPEFLFYDEMD 122 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 T + + L T R+ A+ L+Y CGLR+SEA SL +I L I GKG+ Sbjct: 123 TFLSSFDLDTPD-----GLRDRAMFELMYACGLRVSEAASLRLYDIDLHDRILTIHGKGN 177 Query: 196 KIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 K RIVP ++ +LE+Y ++ P + + +F RGK L Q ++ Sbjct: 178 KQRIVPFY-ALAGELLEHYLQEVRPQWMKEEHDI-VFINQRGKGLTTRGIQYRMQLAADT 235 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 L + H RHSFATHLL NG DLR +Q +LGH LSTTQ+Y +V + + + Sbjct: 236 CSLSVHVHPHMFRHSFATHLLDNGADLRVVQELLGHASLSTTQVYVHVTQER----LKKA 291 Query: 314 YDQTHPSITQK 324 Y HP +K Sbjct: 292 YTHAHPRAQEK 302 >gi|16130796|ref|NP_417370.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. MG1655] gi|26249309|ref|NP_755349.1| site-specific tyrosine recombinase XerD [Escherichia coli CFT073] gi|74313452|ref|YP_311871.1| site-specific tyrosine recombinase XerD [Shigella sonnei Ss046] gi|82545483|ref|YP_409430.1| site-specific tyrosine recombinase XerD [Shigella boydii Sb227] gi|82778340|ref|YP_404689.1| site-specific tyrosine recombinase XerD [Shigella dysenteriae Sd197] gi|89109673|ref|AP_003453.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. W3110] gi|110643042|ref|YP_670772.1| site-specific tyrosine recombinase XerD [Escherichia coli 536] gi|110806797|ref|YP_690317.1| site-specific tyrosine recombinase XerD [Shigella flexneri 5 str. 8401] gi|157158312|ref|YP_001464231.1| site-specific tyrosine recombinase XerD [Escherichia coli E24377A] gi|168747627|ref|ZP_02772649.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4113] gi|168753832|ref|ZP_02778839.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4401] gi|168766887|ref|ZP_02791894.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4486] gi|168775771|ref|ZP_02800778.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4196] gi|168778907|ref|ZP_02803914.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4076] gi|168785740|ref|ZP_02810747.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC869] gi|168800027|ref|ZP_02825034.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC508] gi|170082455|ref|YP_001731775.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. DH10B] gi|170681991|ref|YP_001745047.1| site-specific tyrosine recombinase XerD [Escherichia coli SMS-3-5] gi|187732006|ref|YP_001881663.1| site-specific tyrosine recombinase XerD [Shigella boydii CDC 3083-94] gi|188496120|ref|ZP_03003390.1| tyrosine recombinase XerD [Escherichia coli 53638] gi|191166010|ref|ZP_03027846.1| tyrosine recombinase XerD [Escherichia coli B7A] gi|191173237|ref|ZP_03034768.1| tyrosine recombinase XerD [Escherichia coli F11] gi|193063471|ref|ZP_03044560.1| tyrosine recombinase XerD [Escherichia coli E22] gi|193070556|ref|ZP_03051495.1| tyrosine recombinase XerD [Escherichia coli E110019] gi|194426297|ref|ZP_03058852.1| tyrosine recombinase XerD [Escherichia coli B171] gi|194431675|ref|ZP_03063966.1| tyrosine recombinase XerD [Shigella dysenteriae 1012] gi|194436800|ref|ZP_03068900.1| tyrosine recombinase XerD [Escherichia coli 101-1] gi|195936512|ref|ZP_03081894.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4024] gi|208806438|ref|ZP_03248775.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4206] gi|208814608|ref|ZP_03255937.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4045] gi|208820065|ref|ZP_03260385.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4042] gi|209398903|ref|YP_002272368.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4115] gi|209920348|ref|YP_002294432.1| site-specific tyrosine recombinase XerD [Escherichia coli SE11] gi|215488194|ref|YP_002330625.1| site-specific tyrosine recombinase XerD [Escherichia coli O127:H6 str. E2348/69] gi|218555442|ref|YP_002388355.1| site-specific tyrosine recombinase XerD [Escherichia coli IAI1] gi|218691019|ref|YP_002399231.1| site-specific tyrosine recombinase XerD [Escherichia coli ED1a] gi|218696489|ref|YP_002404156.1| site-specific tyrosine recombinase XerD [Escherichia coli 55989] gi|227888443|ref|ZP_04006248.1| site-specific tyrosine recombinase [Escherichia coli 83972] gi|238902019|ref|YP_002927815.1| site-specific tyrosine recombinase [Escherichia coli BW2952] gi|253772265|ref|YP_003035096.1| site-specific tyrosine recombinase XerD [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162806|ref|YP_003045914.1| site-specific tyrosine recombinase XerD [Escherichia coli B str. REL606] gi|254794844|ref|YP_003079681.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7 str. TW14359] gi|256019308|ref|ZP_05433173.1| site-specific tyrosine recombinase XerD [Shigella sp. D9] gi|256024596|ref|ZP_05438461.1| site-specific tyrosine recombinase XerD [Escherichia sp. 4_1_40B] gi|260845562|ref|YP_003223340.1| site-specific tyrosine recombinase XerD [Escherichia coli O103:H2 str. 12009] gi|260857017|ref|YP_003230908.1| site-specific tyrosine recombinase XerD [Escherichia coli O26:H11 str. 11368] gi|260869571|ref|YP_003235973.1| site-specific tyrosine recombinase XerD [Escherichia coli O111:H- str. 11128] gi|261226207|ref|ZP_05940488.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str. FRIK2000] gi|261256538|ref|ZP_05949071.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7 str. FRIK966] gi|291284213|ref|YP_003501031.1| Tyrosine recombinase xerD [Escherichia coli O55:H7 str. CB9615] gi|293412253|ref|ZP_06654976.1| tyrosine recombinase XerD [Escherichia coli B354] gi|293416147|ref|ZP_06658787.1| tyrosine recombinase XerD [Escherichia coli B185] gi|293449216|ref|ZP_06663637.1| tyrosine recombinase XerD [Escherichia coli B088] gi|297521422|ref|ZP_06939808.1| site-specific tyrosine recombinase XerD [Escherichia coli OP50] gi|300815654|ref|ZP_07095878.1| tyrosine recombinase XerD [Escherichia coli MS 107-1] gi|300820698|ref|ZP_07100849.1| tyrosine recombinase XerD [Escherichia coli MS 119-7] gi|300906556|ref|ZP_07124247.1| tyrosine recombinase XerD [Escherichia coli MS 84-1] gi|300921226|ref|ZP_07137599.1| tyrosine recombinase XerD [Escherichia coli MS 115-1] gi|300925125|ref|ZP_07141039.1| tyrosine recombinase XerD [Escherichia coli MS 182-1] gi|300928170|ref|ZP_07143712.1| tyrosine recombinase XerD [Escherichia coli MS 187-1] gi|300936040|ref|ZP_07150988.1| tyrosine recombinase XerD [Escherichia coli MS 21-1] gi|300947617|ref|ZP_07161788.1| tyrosine recombinase XerD [Escherichia coli MS 116-1] gi|300954266|ref|ZP_07166729.1| tyrosine recombinase XerD [Escherichia coli MS 175-1] gi|300980312|ref|ZP_07174966.1| tyrosine recombinase XerD [Escherichia coli MS 45-1] gi|300995674|ref|ZP_07181202.1| tyrosine recombinase XerD [Escherichia coli MS 200-1] gi|301027808|ref|ZP_07191113.1| tyrosine recombinase XerD [Escherichia coli MS 196-1] gi|301049322|ref|ZP_07196292.1| tyrosine recombinase XerD [Escherichia coli MS 185-1] gi|301303052|ref|ZP_07209179.1| tyrosine recombinase XerD [Escherichia coli MS 124-1] gi|301327295|ref|ZP_07220551.1| tyrosine recombinase XerD [Escherichia coli MS 78-1] gi|301643756|ref|ZP_07243794.1| tyrosine recombinase XerD [Escherichia coli MS 146-1] gi|307139581|ref|ZP_07498937.1| site-specific tyrosine recombinase XerD [Escherichia coli H736] gi|307310487|ref|ZP_07590135.1| tyrosine recombinase XerD [Escherichia coli W] gi|309785299|ref|ZP_07679930.1| tyrosine recombinase XerD [Shigella dysenteriae 1617] gi|312964846|ref|ZP_07779086.1| tyrosine recombinase XerD [Escherichia coli 2362-75] gi|331643584|ref|ZP_08344715.1| tyrosine recombinase XerD [Escherichia coli H736] gi|331648640|ref|ZP_08349728.1| tyrosine recombinase XerD [Escherichia coli M605] gi|331659024|ref|ZP_08359966.1| tyrosine recombinase XerD [Escherichia coli TA206] gi|331664467|ref|ZP_08365373.1| tyrosine recombinase XerD [Escherichia coli TA143] gi|331669629|ref|ZP_08370475.1| tyrosine recombinase XerD [Escherichia coli TA271] gi|331674379|ref|ZP_08375139.1| tyrosine recombinase XerD [Escherichia coli TA280] gi|331678881|ref|ZP_08379555.1| tyrosine recombinase XerD [Escherichia coli H591] gi|331684520|ref|ZP_08385112.1| tyrosine recombinase XerD [Escherichia coli H299] gi|332280422|ref|ZP_08392835.1| tyrosine recombinase xerD [Shigella sp. D9] gi|67475548|sp|P0A8P8|XERD_ECOLI RecName: Full=Tyrosine recombinase xerD gi|67475549|sp|P0A8P9|XERD_ECOL6 RecName: Full=Tyrosine recombinase xerD gi|26109717|gb|AAN81922.1|AE016766_10 Integrase/recombinase xerD [Escherichia coli CFT073] gi|147548|gb|AAA62787.1| xprB [Escherichia coli] gi|887844|gb|AAA83075.1| site-specific integrase/recombinase, with xerC [Escherichia coli] gi|1789261|gb|AAC75932.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. MG1655] gi|73856929|gb|AAZ89636.1| site-specific recombinase [Shigella sonnei Ss046] gi|81242488|gb|ABB63198.1| site-specific recombinase [Shigella dysenteriae Sd197] gi|81246894|gb|ABB67602.1| site-specific recombinase [Shigella boydii Sb227] gi|85675706|dbj|BAE76959.1| site-specific tyrosine recombinase [Escherichia coli str. K12 substr. W3110] gi|110344634|gb|ABG70871.1| integrase/recombinase XerD [Escherichia coli 536] gi|110616345|gb|ABF05012.1| site-specific recombinase [Shigella flexneri 5 str. 8401] gi|157080342|gb|ABV20050.1| tyrosine recombinase XerD [Escherichia coli E24377A] gi|169890290|gb|ACB03997.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. DH10B] gi|170519709|gb|ACB17887.1| tyrosine recombinase XerD [Escherichia coli SMS-3-5] gi|187428998|gb|ACD08272.1| tyrosine recombinase XerD [Shigella boydii CDC 3083-94] gi|187768812|gb|EDU32656.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4196] gi|188017752|gb|EDU55874.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4113] gi|188491319|gb|EDU66422.1| tyrosine recombinase XerD [Escherichia coli 53638] gi|189003626|gb|EDU72612.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4076] gi|189358670|gb|EDU77089.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4401] gi|189363773|gb|EDU82192.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4486] gi|189373936|gb|EDU92352.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC869] gi|189377626|gb|EDU96042.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC508] gi|190903958|gb|EDV63671.1| tyrosine recombinase XerD [Escherichia coli B7A] gi|190906488|gb|EDV66096.1| tyrosine recombinase XerD [Escherichia coli F11] gi|192930748|gb|EDV83353.1| tyrosine recombinase XerD [Escherichia coli E22] gi|192956139|gb|EDV86603.1| tyrosine recombinase XerD [Escherichia coli E110019] gi|194415605|gb|EDX31872.1| tyrosine recombinase XerD [Escherichia coli B171] gi|194420031|gb|EDX36109.1| tyrosine recombinase XerD [Shigella dysenteriae 1012] gi|194424282|gb|EDX40269.1| tyrosine recombinase XerD [Escherichia coli 101-1] gi|208726239|gb|EDZ75840.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4206] gi|208735885|gb|EDZ84572.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4045] gi|208740188|gb|EDZ87870.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4042] gi|209160303|gb|ACI37736.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4115] gi|209760578|gb|ACI78601.1| site-specific recombinase [Escherichia coli] gi|209760582|gb|ACI78603.1| site-specific recombinase [Escherichia coli] gi|209760584|gb|ACI78604.1| site-specific recombinase [Escherichia coli] gi|209760586|gb|ACI78605.1| site-specific recombinase [Escherichia coli] gi|209913607|dbj|BAG78681.1| site-specific recombinase [Escherichia coli SE11] gi|215266266|emb|CAS10695.1| site-specific tyrosine recombinase [Escherichia coli O127:H6 str. E2348/69] gi|218353221|emb|CAU99139.1| site-specific tyrosine recombinase [Escherichia coli 55989] gi|218362210|emb|CAQ99828.1| site-specific tyrosine recombinase [Escherichia coli IAI1] gi|218428583|emb|CAR09510.2| site-specific tyrosine recombinase [Escherichia coli ED1a] gi|222034589|emb|CAP77331.1| Tyrosine recombinase xerD [Escherichia coli LF82] gi|227834712|gb|EEJ45178.1| site-specific tyrosine recombinase [Escherichia coli 83972] gi|238863557|gb|ACR65555.1| site-specific tyrosine recombinase [Escherichia coli BW2952] gi|242378425|emb|CAQ33206.1| site-specific recombinase, subunit of Xer site-specific recombination system [Escherichia coli BL21(DE3)] gi|253323309|gb|ACT27911.1| tyrosine recombinase XerD [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974707|gb|ACT40378.1| site-specific tyrosine recombinase XerD [Escherichia coli B str. REL606] gi|253978873|gb|ACT44543.1| site-specific tyrosine recombinase XerD [Escherichia coli BL21(DE3)] gi|254594244|gb|ACT73605.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str. TW14359] gi|257755666|dbj|BAI27168.1| site-specific tyrosine recombinase XerD [Escherichia coli O26:H11 str. 11368] gi|257760709|dbj|BAI32206.1| site-specific tyrosine recombinase XerD [Escherichia coli O103:H2 str. 12009] gi|257765927|dbj|BAI37422.1| site-specific tyrosine recombinase XerD [Escherichia coli O111:H- str. 11128] gi|260448060|gb|ACX38482.1| tyrosine recombinase XerD [Escherichia coli DH1] gi|281179899|dbj|BAI56229.1| site-specific recombinase [Escherichia coli SE15] gi|284922842|emb|CBG35931.1| tyrosine recombinase [Escherichia coli 042] gi|290764086|gb|ADD58047.1| Tyrosine recombinase xerD [Escherichia coli O55:H7 str. CB9615] gi|291322306|gb|EFE61735.1| tyrosine recombinase XerD [Escherichia coli B088] gi|291432336|gb|EFF05318.1| tyrosine recombinase XerD [Escherichia coli B185] gi|291469024|gb|EFF11515.1| tyrosine recombinase XerD [Escherichia coli B354] gi|299879070|gb|EFI87281.1| tyrosine recombinase XerD [Escherichia coli MS 196-1] gi|300298921|gb|EFJ55306.1| tyrosine recombinase XerD [Escherichia coli MS 185-1] gi|300304782|gb|EFJ59302.1| tyrosine recombinase XerD [Escherichia coli MS 200-1] gi|300318727|gb|EFJ68511.1| tyrosine recombinase XerD [Escherichia coli MS 175-1] gi|300401595|gb|EFJ85133.1| tyrosine recombinase XerD [Escherichia coli MS 84-1] gi|300409320|gb|EFJ92858.1| tyrosine recombinase XerD [Escherichia coli MS 45-1] gi|300411832|gb|EFJ95142.1| tyrosine recombinase XerD [Escherichia coli MS 115-1] gi|300418727|gb|EFK02038.1| tyrosine recombinase XerD [Escherichia coli MS 182-1] gi|300452792|gb|EFK16412.1| tyrosine recombinase XerD [Escherichia coli MS 116-1] gi|300458832|gb|EFK22325.1| tyrosine recombinase XerD [Escherichia coli MS 21-1] gi|300463810|gb|EFK27303.1| tyrosine recombinase XerD [Escherichia coli MS 187-1] gi|300526962|gb|EFK48031.1| tyrosine recombinase XerD [Escherichia coli MS 119-7] gi|300531583|gb|EFK52645.1| tyrosine recombinase XerD [Escherichia coli MS 107-1] gi|300841716|gb|EFK69476.1| tyrosine recombinase XerD [Escherichia coli MS 124-1] gi|300846158|gb|EFK73918.1| tyrosine recombinase XerD [Escherichia coli MS 78-1] gi|301077855|gb|EFK92661.1| tyrosine recombinase XerD [Escherichia coli MS 146-1] gi|306909382|gb|EFN39877.1| tyrosine recombinase XerD [Escherichia coli W] gi|307554870|gb|ADN47645.1| site-specific tyrosine recombinase XerD [Escherichia coli ABU 83972] gi|308926419|gb|EFP71895.1| tyrosine recombinase XerD [Shigella dysenteriae 1617] gi|309703254|emb|CBJ02589.1| tyrosine recombinase [Escherichia coli ETEC H10407] gi|312290402|gb|EFR18282.1| tyrosine recombinase XerD [Escherichia coli 2362-75] gi|312947427|gb|ADR28254.1| site-specific tyrosine recombinase XerD [Escherichia coli O83:H1 str. NRG 857C] gi|315062198|gb|ADT76525.1| site-specific tyrosine recombinase [Escherichia coli W] gi|315137493|dbj|BAJ44652.1| tyrosine recombinase xerD [Escherichia coli DH1] gi|315256777|gb|EFU36745.1| tyrosine recombinase XerD [Escherichia coli MS 85-1] gi|315293873|gb|EFU53225.1| tyrosine recombinase XerD [Escherichia coli MS 153-1] gi|315295682|gb|EFU55002.1| tyrosine recombinase XerD [Escherichia coli MS 16-3] gi|315614950|gb|EFU95588.1| tyrosine recombinase XerD [Escherichia coli 3431] gi|320175918|gb|EFW50996.1| Tyrosine recombinase XerD [Shigella dysenteriae CDC 74-1112] gi|320182203|gb|EFW57106.1| Tyrosine recombinase XerD [Shigella boydii ATCC 9905] gi|320184562|gb|EFW59363.1| Tyrosine recombinase XerD [Shigella flexneri CDC 796-83] gi|320189238|gb|EFW63897.1| Tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC1212] gi|320195013|gb|EFW69642.1| Tyrosine recombinase XerD [Escherichia coli WV_060327] gi|320202554|gb|EFW77124.1| Tyrosine recombinase XerD [Escherichia coli EC4100B] gi|320640537|gb|EFX10076.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7 str. G5101] gi|320645784|gb|EFX14769.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H- str. 493-89] gi|320651084|gb|EFX19524.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H- str. H 2687] gi|320656580|gb|EFX24476.1| site-specific tyrosine recombinase XerD [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662100|gb|EFX29501.1| site-specific tyrosine recombinase XerD [Escherichia coli O55:H7 str. USDA 5905] gi|320667175|gb|EFX34138.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7 str. LSU-61] gi|323162515|gb|EFZ48365.1| tyrosine recombinase XerD [Escherichia coli E128010] gi|323167900|gb|EFZ53590.1| tyrosine recombinase XerD [Shigella sonnei 53G] gi|323180338|gb|EFZ65890.1| tyrosine recombinase XerD [Escherichia coli 1180] gi|323183448|gb|EFZ68845.1| tyrosine recombinase XerD [Escherichia coli 1357] gi|323188707|gb|EFZ73992.1| tyrosine recombinase XerD [Escherichia coli RN587/1] gi|323377218|gb|ADX49486.1| tyrosine recombinase XerD [Escherichia coli KO11] gi|323935874|gb|EGB32173.1| tyrosine recombinase XerD [Escherichia coli E1520] gi|323941585|gb|EGB37765.1| tyrosine recombinase XerD [Escherichia coli E482] gi|323946620|gb|EGB42643.1| tyrosine recombinase XerD [Escherichia coli H120] gi|323960809|gb|EGB56430.1| tyrosine recombinase XerD [Escherichia coli H489] gi|323966695|gb|EGB62127.1| tyrosine recombinase XerD [Escherichia coli M863] gi|323971668|gb|EGB66897.1| tyrosine recombinase XerD [Escherichia coli TA007] gi|323978814|gb|EGB73895.1| tyrosine recombinase XerD [Escherichia coli TW10509] gi|324005546|gb|EGB74765.1| tyrosine recombinase XerD [Escherichia coli MS 57-2] gi|324011756|gb|EGB80975.1| tyrosine recombinase XerD [Escherichia coli MS 60-1] gi|324119935|gb|EGC13814.1| tyrosine recombinase XerD [Escherichia coli E1167] gi|325498455|gb|EGC96314.1| site-specific tyrosine recombinase [Escherichia fergusonii ECD227] gi|326343096|gb|EGD66864.1| Tyrosine recombinase XerD [Escherichia coli O157:H7 str. 1125] gi|327251657|gb|EGE63343.1| tyrosine recombinase XerD [Escherichia coli STEC_7v] gi|330908926|gb|EGH37440.1| tyrosine recombinase XerD [Escherichia coli AA86] gi|331037055|gb|EGI09279.1| tyrosine recombinase XerD [Escherichia coli H736] gi|331042387|gb|EGI14529.1| tyrosine recombinase XerD [Escherichia coli M605] gi|331053606|gb|EGI25635.1| tyrosine recombinase XerD [Escherichia coli TA206] gi|331058398|gb|EGI30379.1| tyrosine recombinase XerD [Escherichia coli TA143] gi|331063297|gb|EGI35210.1| tyrosine recombinase XerD [Escherichia coli TA271] gi|331068473|gb|EGI39868.1| tyrosine recombinase XerD [Escherichia coli TA280] gi|331073711|gb|EGI45032.1| tyrosine recombinase XerD [Escherichia coli H591] gi|331078135|gb|EGI49341.1| tyrosine recombinase XerD [Escherichia coli H299] gi|332087665|gb|EGI92792.1| tyrosine recombinase XerD [Shigella dysenteriae 155-74] gi|332090893|gb|EGI95984.1| tyrosine recombinase XerD [Shigella boydii 3594-74] gi|332102774|gb|EGJ06120.1| tyrosine recombinase xerD [Shigella sp. D9] gi|332344790|gb|AEE58124.1| tyrosine recombinase XerD [Escherichia coli UMNK88] gi|332999673|gb|EGK19258.1| tyrosine recombinase XerD [Shigella flexneri VA-6] Length = 298 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 91/304 (29%), Positives = 157/304 (51%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +E+ L++ TL +Y R + + + +T+ T + +++A +++R Sbjct: 9 EQFLDALWLEKNLAENTLNAYR---RDLSMMVEWLHHRGLTLATAQS---DDLQALLAER 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K + ++ + K LP+ L+E Q L+ Sbjct: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L+ ++ R+ A+L +LY GLR+SE + LT +I Q +R+ GKG+K R Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VPL + Y + P+ LN ++I + LF R + + F I+ G+ Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292 Query: 316 QTHP 319 Q HP Sbjct: 293 QHHP 296 >gi|152979420|ref|YP_001345049.1| site-specific tyrosine recombinase XerD [Actinobacillus succinogenes 130Z] gi|150841143|gb|ABR75114.1| tyrosine recombinase XerD [Actinobacillus succinogenes 130Z] Length = 297 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 92/303 (30%), Positives = 150/303 (49%), Gaps = 21/303 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L ++ +E+GLS+ T+QSY D +L ++ I++ + ++++F+ +R Sbjct: 10 FLNDIWLEKGLSENTIQSYRLDLAALCDWLNAHSLSLISLDAV------DLQSFLGQRVE 63 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 S R LS ++ +YL + + + + K LP+ L E+Q N Sbjct: 64 AGYKATSTARLLSAMRKLFQYLYRENYRPDDPSATLSSPKLPTRLPKYLTEQQV-----N 118 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LL ++ R+ A+L LLY GLR++E +SL+ NI Q +R+ GKG+K RIV Sbjct: 119 DLLSVPSTDVPLELRDKAMLELLYATGLRVTELVSLSMDNISLSQGVVRVIGKGNKERIV 178 Query: 201 PLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQ---RYIRQLRRYLGL 256 P+ + E+ LN +F R + F +Y L G Sbjct: 179 PMGEEAAYWVGEFIRYGRAMLLNGQSSDVVFPSRRALQMTRQTFWHRIKYYAVLADIDGD 238 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 LS H LRH+FATHL+++G DLR +Q +LGH LSTTQIYT+V + + ++++ Sbjct: 239 SLS--PHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER----LKRLHEK 292 Query: 317 THP 319 HP Sbjct: 293 FHP 295 >gi|127511259|ref|YP_001092456.1| tyrosine recombinase XerC [Shewanella loihica PV-4] gi|126636554|gb|ABO22197.1| tyrosine recombinase XerC [Shewanella loihica PV-4] Length = 297 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/258 (31%), Positives = 136/258 (52%), Gaps = 18/258 (6%) Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 ++S +++A ++K + +G RS+ +LS +K F YL + + LN+ K+ Sbjct: 46 EVSDEQLQAVLNKLHRKGLGPRSIALTLSALKQFCHYLLQEGYIKKDPCLNLSAPKQQKP 105 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 LP+ ++ L V ++L + + R+ AI+ L Y GLR++E +L ++I Sbjct: 106 LPKNMD----LDSVTHLLSIEGDDA--LALRDKAIMELFYSSGLRLAELAALDTRDIASG 159 Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAI---LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241 + +++ GKG K RIVP+ AI L+ L P + + LF +GK L Sbjct: 160 EHQVKVMGKGSKERIVPIGRMALSAIDDWLKVRSLLPCEDD-----ALFVTAKGKRLAHR 214 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 Q + + + GL H LRHSFATH+L + DLR++Q +LGH LSTTQ+YT++ Sbjct: 215 SIQARLNKWGQLQGLNARVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQVYTSL 274 Query: 302 NSKNGGDWMMEIYDQTHP 319 + ++ + ++YD HP Sbjct: 275 DFQH----LAKVYDGAHP 288 >gi|157162354|ref|YP_001459672.1| site-specific tyrosine recombinase XerD [Escherichia coli HS] gi|157068034|gb|ABV07289.1| tyrosine recombinase XerD [Escherichia coli HS] Length = 298 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 91/304 (29%), Positives = 157/304 (51%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +E+ L++ TL +Y R + + + +T+ T + +++A +++R Sbjct: 9 EQFLDALWLEKNLAENTLNAYR---RDLSMMVEWLHHRGLTLATAQS---DDLQALLAER 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K + ++ + K LP+ L+E Q L+ Sbjct: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L+ ++ R+ A+L +LY GLR+SE + LT +I Q +R+ GKG+K R Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VPL + Y + P+ LN ++I + LF R + + F I+ G+ Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292 Query: 316 QTHP 319 Q HP Sbjct: 293 QHHP 296 >gi|82703659|ref|YP_413225.1| tyrosine recombinase XerC [Nitrosospira multiformis ATCC 25196] gi|82411724|gb|ABB75833.1| tyrosine recombinase XerC subunit [Nitrosospira multiformis ATCC 25196] Length = 318 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 93/334 (27%), Positives = 150/334 (44%), Gaps = 48/334 (14%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 +PE EL +L L + R LS LT +SY D + E + I I Sbjct: 17 GKMPEKGQAELASA---YLAYLSVTRRLSPLTCESYGRDLDVLMNLSRGIALEHLQIHHI 73 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 R+ F+++ RSL R LS + YL + + +R K Sbjct: 74 RR--------FLAQLHANGFSGRSLARMLSAWRGLYNYLARHHGYACNPCAGVRAPKSPR 125 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 SLPR L+ +AL L++ + R+ A+ L Y GLR++E +L P+++ Sbjct: 126 SLPRTLSPDEALKLLE------FDTPDLVALRDKAMFELCYSSGLRLAELANLKPEDLSL 179 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 + +R+ GKG+K R VP+ + + E+ R KP G+F Sbjct: 180 AEGIVRVTGKGNKTRDVPVGSKAMQVVREWIKQ--------------RATLAKPGETGLF 225 Query: 244 -QRYIRQLRRY------------LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290 R+ R + R G+ H LRHSFA+H+L + G+LR++Q +LGH Sbjct: 226 LSRHGRNISRRSIDQRLKIQAVKQGISGRIHPHVLRHSFASHVLQSSGNLRAVQEMLGHA 285 Query: 291 RLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 +STTQ+YT+++ ++ + ++YD THP +K Sbjct: 286 SISTTQVYTHLDFQH----LSKVYDATHPRARKK 315 >gi|24114148|ref|NP_708658.1| site-specific tyrosine recombinase XerD [Shigella flexneri 2a str. 301] gi|30064206|ref|NP_838377.1| site-specific tyrosine recombinase XerD [Shigella flexneri 2a str. 2457T] gi|91212272|ref|YP_542258.1| site-specific tyrosine recombinase XerD [Escherichia coli UTI89] gi|218559887|ref|YP_002392800.1| site-specific tyrosine recombinase XerD [Escherichia coli S88] gi|237706462|ref|ZP_04536943.1| tyrosine recombinase xerD [Escherichia sp. 3_2_53FAA] gi|34222799|sp|Q7ZAM0|XERD_SHIFL RecName: Full=Tyrosine recombinase xerD gi|24053288|gb|AAN44365.1| site-specific recombinase [Shigella flexneri 2a str. 301] gi|30042463|gb|AAP18187.1| site-specific recombinase [Shigella flexneri 2a str. 2457T] gi|91073846|gb|ABE08727.1| site-specific recombinase [Escherichia coli UTI89] gi|218366656|emb|CAR04410.1| site-specific tyrosine recombinase [Escherichia coli S88] gi|226899502|gb|EEH85761.1| tyrosine recombinase xerD [Escherichia sp. 3_2_53FAA] gi|294492679|gb|ADE91435.1| tyrosine recombinase XerD [Escherichia coli IHE3034] gi|307625533|gb|ADN69837.1| site-specific tyrosine recombinase XerD [Escherichia coli UM146] gi|313647934|gb|EFS12380.1| tyrosine recombinase XerD [Shigella flexneri 2a str. 2457T] gi|315289443|gb|EFU48838.1| tyrosine recombinase XerD [Escherichia coli MS 110-3] gi|323951667|gb|EGB47542.1| tyrosine recombinase XerD [Escherichia coli H252] gi|323957385|gb|EGB53107.1| tyrosine recombinase XerD [Escherichia coli H263] gi|332752931|gb|EGJ83315.1| tyrosine recombinase XerD [Shigella flexneri 4343-70] gi|332753730|gb|EGJ84109.1| tyrosine recombinase XerD [Shigella flexneri K-671] gi|332754528|gb|EGJ84894.1| tyrosine recombinase XerD [Shigella flexneri 2747-71] gi|332765825|gb|EGJ96038.1| tyrosine recombinase XerD [Shigella flexneri 2930-71] gi|333000098|gb|EGK19681.1| tyrosine recombinase XerD [Shigella flexneri K-218] gi|333015114|gb|EGK34457.1| tyrosine recombinase XerD [Shigella flexneri K-304] Length = 298 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 91/304 (29%), Positives = 157/304 (51%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +E+ L++ TL +Y R + + + +T+ T + +++A +++R Sbjct: 9 EQFLDALWLEKNLAENTLNAYR---RDLSMMVEWLHHRGLTLATAQS---DDLQALLAER 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K + ++ + K LP+ L+E Q L+ Sbjct: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L+ ++ R+ A+L +LY GLR+SE + LT +I Q +R+ GKG+K R Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VPL + Y + P+ LN ++I + LF R + + F I+ G+ Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292 Query: 316 QTHP 319 Q HP Sbjct: 293 QHHP 296 >gi|307942508|ref|ZP_07657856.1| tyrosine recombinase XerD [Roseibium sp. TrichSKD4] gi|307774147|gb|EFO33360.1| tyrosine recombinase XerD [Roseibium sp. TrichSKD4] Length = 307 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 98/315 (31%), Positives = 151/315 (47%), Gaps = 33/315 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L+ L ERG ++ TLQSY D F F A + + T R I A++ Sbjct: 8 ESFLEMLSAERGAAENTLQSYRRDLDDFAEFTA--PQNPSAVNTDR------ISAYLRDL 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + S R LS +K + K+L I T+ + KK +LP+ L+ + L+ Sbjct: 60 SLRGFAETSQARRLSALKQYFKFLYADGIRTDDPTRTLSAPKKRQALPKVLSIDEVDKLI 119 Query: 139 DNVLLHTSHE----TKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 + + K + A R +L +LY GLR+SE ++L DQ + + GK Sbjct: 120 GEAQQAATKKQDSPAKQLRAQRLYTLLEVLYATGLRVSELVALPVTAAQRDQRLIEVTGK 179 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR--YIRQLR 251 G K R+VPL P+ +KA+ +Y +L P GK G F R + R L+ Sbjct: 180 GGKERLVPLSPAAQKAMRDYIRQRA-ELGAYATSPWLFPSHGKS---GHFTRQAFGRDLK 235 Query: 252 RYLGLPLST-------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 L + T + H LRH+FA+HLL NG DLR +Q +LGH +STTQIYT+V + Sbjct: 236 ---DLAVDTKIDTDKVSPHVLRHAFASHLLQNGADLRVVQQLLGHADISTTQIYTHVLDE 292 Query: 305 NGGDWMMEIYDQTHP 319 + ++ + HP Sbjct: 293 R----LTQLVESAHP 303 >gi|255282461|ref|ZP_05347016.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469] gi|255267045|gb|EET60250.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469] Length = 304 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 89/298 (29%), Positives = 148/298 (49%), Gaps = 20/298 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 LE E+ S T+ SY+ D ++ +L+ EK+ + ++ T + ++I + + Sbjct: 22 LEEEKNASNSTVMSYQRDLKKLFHYLSGKGVEKV-----QDVTATSLNSYILQMEKEGFS 76 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S+ R+++ I++F +L K K TE N++ P L ++ + L++ L Sbjct: 77 TSSVSRTIASIRAFFHFLVKTKAVTEDPSDNLKAPHVEKKTPEILTLEETVQLLNQPELD 136 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALS--LTPQNIMDDQSTLRIQGKGDKIRIVPL 202 ++ K I R+ A+L LLY G+R+SE +S LT N+ R DK R++P Sbjct: 137 SA---KGI--RDKAMLELLYATGMRVSELISMKLTDVNMAMGYVLCR---DSDKERVIPF 188 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 KA+ Y + L + LF GK ++ F + I+ G+ T Sbjct: 189 GTEAEKALKRYLEESRSVLLKGKESEFLFVNCSGKSMSRQGFWKIIKFYSAQAGITKDIT 248 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HTLRHSF HL+ NG DLR++Q ++GH +STTQIY ++N + + EIY + HP Sbjct: 249 PHTLRHSFGAHLVQNGADLRAVQEMMGHSDISTTQIYMDMNVRR----VREIYAKAHP 302 >gi|184156584|ref|YP_001844923.1| site-specific recombinase XerD [Acinetobacter baumannii ACICU] gi|183208178|gb|ACC55576.1| Site-specific recombinase XerD [Acinetobacter baumannii ACICU] gi|322506471|gb|ADX01925.1| xerD [Acinetobacter baumannii 1656-2] Length = 306 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/240 (33%), Positives = 130/240 (54%), Gaps = 11/240 (4%) Query: 82 KIGD--RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 K+G RS+ R LS ++ F K+L+++K+ +++ + + K +LP+ L E+ L+ Sbjct: 74 KVGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLCEEDVEALIQ 133 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + T+ + R+ A+ +LY CGLR+SE L+L + I Q LRI GKG+K R+ Sbjct: 134 APDITTA-----LGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRITGKGNKERL 188 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 VPL + Y + L + LF G ++ F I++ + Sbjct: 189 VPLGQYACDWVERYLNEARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAE 248 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V M +++++ HP Sbjct: 249 LSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR----MQQLHEKHHP 304 >gi|56415803|ref|YP_152878.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364733|ref|YP_002144370.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56130060|gb|AAV79566.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197096210|emb|CAR61807.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 300 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 90/298 (30%), Positives = 149/298 (50%), Gaps = 17/298 (5%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L+ L++ER LS +TL +Y+ RQ +A E +++ +Q +R+F + R + Sbjct: 14 LRYLDVERQLSPITLLNYQ---RQLDAIIALAGE--TGLKSWQQCDAAIVRSFAVRSRRK 68 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 +G SL LS ++SF +L + + + K LP+ ++ L+D Sbjct: 69 GLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDID 128 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 L + R+ A+L ++YG GLR+SE + L +++ D + + GKG K R +P Sbjct: 129 L------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLP 182 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 + + I + DL L + + LF GK ++ Q+ + GL Sbjct: 183 IGRNAVTWIEHWLDLR--GLFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVH 240 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ + +YD HP Sbjct: 241 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHP 294 >gi|315092744|gb|EFT64720.1| tyrosine recombinase XerD [Propionibacterium acnes HL060PA1] Length = 306 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 95/311 (30%), Positives = 156/311 (50%), Gaps = 27/311 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L++L +ERGLS T+Q+Y D ++ +L I ++ +++ ++ F +R Sbjct: 10 EDYLRHLVVERGLSDNTVQAYRRDLLRYQEYLGSRG-----IGSLAEVTRVDVEEF--RR 62 Query: 79 RTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 IG S+ R + +++ ++ M +S LP+AL Q + Sbjct: 63 HLDHIGLAPASVTRCVVAVRNLHRFAVGSGQVQADVTAGMSPGTRSRRLPKALTMDQVES 122 Query: 137 LVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNI---MDDQS-TLRIQ 191 L+ + +T ++ R+ A+L LLYG G R+SE +L +I +DD LR+ Sbjct: 123 LL------AAPDTSTVEGLRDVALLELLYGTGARVSEVCALDVDDIRRVLDDPDLGLRLI 176 Query: 192 GKGDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 GKGDK RIVPL KA+ + + N + L RG+ L+ IR+ Sbjct: 177 GKGDKERIVPLGSYAAKAVDAWLIRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAVIRR 236 Query: 250 LRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 GL + + H+LRHS+ATHLL G D+R +Q +LGH ++TTQIYT V + D Sbjct: 237 AGEAAGLDVEHLSPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYTLVTA----D 292 Query: 309 WMMEIYDQTHP 319 + E+Y +HP Sbjct: 293 HLREVYRSSHP 303 >gi|323154775|gb|EFZ40973.1| tyrosine recombinase XerD [Escherichia coli EPECa14] Length = 298 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 91/304 (29%), Positives = 157/304 (51%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +E+ L++ TL +Y R + + + +T+ T + +++A +++R Sbjct: 9 EQFLDALWLEKNLAENTLNAYR---RDLSMMVEWLYHRGLTLATAQS---DDLQALLAER 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K + ++ + K LP+ L+E Q L+ Sbjct: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L+ ++ R+ A+L +LY GLR+SE + LT +I Q +R+ GKG+K R Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VPL + Y + P+ LN ++I + LF R + + F I+ G+ Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292 Query: 316 QTHP 319 Q HP Sbjct: 293 QHHP 296 >gi|323495869|ref|ZP_08100937.1| site-specific tyrosine recombinase XerD [Vibrio sinaloensis DSM 21326] gi|323319085|gb|EGA72028.1| site-specific tyrosine recombinase XerD [Vibrio sinaloensis DSM 21326] Length = 302 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 94/305 (30%), Positives = 154/305 (50%), Gaps = 21/305 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + +ERGLS+ TL SY D + L +++ + + +S + ++ + + Sbjct: 13 EQFLDAMWMERGLSENTLASYRNDLMKLLQWMSSHNYR------LDFISLSGLQEYQTWL 66 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYL--KKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + S R LS I+ +YL +KR+ S +L L K LP+ L+E+Q Sbjct: 67 VDEGYKQTSRARMLSAIRRLFQYLHREKRRADDPSALLVSPKLPKR--LPKDLSEQQV-- 122 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 + LL ++ R+ A+L LLY GLR++E +SLT +NI Q +R+ GKG K Sbjct: 123 ---DALLDAPDPNDPMELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGK 179 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 R+VP+ + I + +L N +F R + + F I+ G Sbjct: 180 ERLVPMGENAVDWIETFLQQGRSELLGENTSDVVFPSKRARQMTRQTFWHRIKHYAVIAG 239 Query: 256 LPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 + + H LRH+FATHLL+ G DLR +Q +LGH LSTTQIYT+V ++ + +++ Sbjct: 240 IDADKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLH 295 Query: 315 DQTHP 319 + HP Sbjct: 296 SEHHP 300 >gi|194434030|ref|ZP_03066300.1| tyrosine recombinase XerC [Shigella dysenteriae 1012] gi|194417688|gb|EDX33787.1| tyrosine recombinase XerC [Shigella dysenteriae 1012] gi|320178102|gb|EFW53082.1| Tyrosine recombinase XerC [Shigella boydii ATCC 9905] gi|332084672|gb|EGI89860.1| tyrosine recombinase XerC [Shigella boydii 5216-82] gi|332084963|gb|EGI90145.1| tyrosine recombinase XerC [Shigella dysenteriae 155-74] Length = 298 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 91/307 (29%), Positives = 153/307 (49%), Gaps = 17/307 (5%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L + + +L+ L +ER LS +TL +Y+ RQ + F +E ++ +Q T +R Sbjct: 3 DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIINFASEN--GLKNWQQCDVTMVR 57 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F + R + +G SL LS ++SF +L + + + K LP+ ++ Sbjct: 58 NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 L+D + + R+ A+L ++YG GLR+SE + L +++ + + + G Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 KG K R +P+ + I + DL DL + LF GK ++ Q+ + Sbjct: 172 KGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 GL H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ + Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285 Query: 313 IYDQTHP 319 +YD HP Sbjct: 286 VYDAAHP 292 >gi|333000719|gb|EGK20294.1| tyrosine recombinase XerD [Shigella flexneri K-272] gi|333015225|gb|EGK34567.1| tyrosine recombinase XerD [Shigella flexneri K-227] Length = 298 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 91/304 (29%), Positives = 157/304 (51%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +E+ L++ TL +Y R + + + +T+ T + +++A +++R Sbjct: 9 EQFLDALWLEKNLAENTLNAYR---RDLSMMVEWLHHRGLTLATAQS---DDLQALLAER 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K + ++ + K LP+ L+E Q L+ Sbjct: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L+ ++ R+ A+L +LY GLR+SE + LT +I Q +R+ GKG+K R Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTISDISLRQGVVRVIGKGNKER 177 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VPL + Y + P+ LN ++I + LF R + + F I+ G+ Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292 Query: 316 QTHP 319 Q HP Sbjct: 293 QHHP 296 >gi|331082291|ref|ZP_08331417.1| hypothetical protein HMPREF0992_00341 [Lachnospiraceae bacterium 6_1_63FAA] gi|330400777|gb|EGG80378.1| hypothetical protein HMPREF0992_00341 [Lachnospiraceae bacterium 6_1_63FAA] Length = 294 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 90/306 (29%), Positives = 149/306 (48%), Gaps = 20/306 (6%) Query: 17 ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 E Q ++++L RG S+ T SYE D ++ FL ++ I Q+S + ++I Sbjct: 4 EIQEFIEHLHNTRGTSRNTEVSYERDLKKLEQFL-----KQEGILEWHQVSAVLLNSYIM 58 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + S+ RS++ I++F +YL +R+ E+ ++ K P L Sbjct: 59 YLERKNFAASSISRSVASIRAFFQYLCQRECWRENPAEGLKAPKIEKKAPGILT------ 112 Query: 137 LVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 VD V LL E R+ A+L LLY G+R+SE + LT +++ L + Sbjct: 113 -VDEVDLLLSQPKENTAKGVRDRAMLELLYATGIRVSELIHLTLRDVNLKLGYLTC-SQS 170 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 ++ R++P + + A+ Y +L N LF GK ++ F + ++ Sbjct: 171 ERERVIPFGATAKTAVEAYMAWARAELLGENSSEWLFVNCSGKSMSRQGFWKILKGYAVS 230 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ T HTLRHSFA HL+ NG DL+S+Q ++GH +STTQIY N+N + ++ Sbjct: 231 AGIQQDITPHTLRHSFAAHLVQNGADLKSVQEMMGHSDISTTQIYMNMNVNK----IRDV 286 Query: 314 YDQTHP 319 Y + HP Sbjct: 287 YMKAHP 292 >gi|241760809|ref|ZP_04758900.1| integrase/recombinase [Neisseria flavescens SK114] gi|241318706|gb|EER55258.1| integrase/recombinase [Neisseria flavescens SK114] Length = 298 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 83/298 (27%), Positives = 146/298 (48%), Gaps = 19/298 (6%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 +++G S+ T+ +Y D + + L E + + + A + K + + + Sbjct: 19 LQQGKSEHTVSAYRRDLSELMRLLPDNLENGLPTRR-------DFVAVLKKLSQKGLSES 71 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 SL R LS + + +L + ++ NM+ + LP+AL ++ ++++L H Sbjct: 72 SLVRKLSVWRQYCSWLVQIEVMESDPTFNMKAPRLPERLPKALPQEP----LNHILDHAP 127 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 + + +D R+ A+ L+YG GLR+SE L I+ D+ + ++GKG K R VPL V Sbjct: 128 VDDE-LDVRDKAMFELMYGSGLRLSEIQGLNLDGIVLDEGWVSVKGKGGKQRQVPL---V 183 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 K+I D + + LF G L Q+ ++ +G + H +R Sbjct: 184 AKSIAALRDYLAVRIAKEGEQALFTNKNGGRLGQRQIQKRLQAWAVRVGSASHISPHMMR 243 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 HS+ATHLL GD+R++Q +LGH LS TQ+YT ++ D + +YD+ HP +K Sbjct: 244 HSYATHLLQASGDIRAVQELLGHSNLSATQVYTKLDF----DHLARVYDEAHPRAKRK 297 >gi|332829855|gb|EGK02497.1| tyrosine recombinase XerD [Dysgonomonas gadei ATCC BAA-286] Length = 299 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 88/290 (30%), Positives = 150/290 (51%), Gaps = 15/290 (5%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 ++K+ +N+L +E+ LS ++ +Y D + FL E + + ++ +++ Sbjct: 7 IIKKYRNYLL---LEKSLSPNSIDAYMTDLDKLSGFLE---NEGLKAE---EMKLDDLQQ 57 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 FI++ I RS+ R +SGIKSF +L + K LP L+ + Sbjct: 58 FIAQLYDLGINARSVARIISGIKSFYNFLVLDGYMQADPTELLETPKIGLKLPTVLSLDE 117 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L+ + L T RN AIL +LY CGLRISE +L ++ D+ ++++GK Sbjct: 118 IEKLMSVIDLSTKE-----GQRNRAILEVLYSCGLRISELTNLKFSDLFFDEGFIKVEGK 172 Query: 194 GDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 G K R+VP+ + I +Y Y D+ + LF RG ++ + +I+Q Sbjct: 173 GSKQRLVPISHTAINEIEKYLYYRREMDIKKGSEDILFLSKRGTAISRIMVFHFIKQYAD 232 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 G+ + + HT RHSFATHLL G ++R+IQ +LGH +++TT+IYT+++ Sbjct: 233 QAGIKKTISPHTFRHSFATHLLEGGANIRAIQLMLGHEKITTTEIYTHMD 282 >gi|1916335|gb|AAC45774.1| site-specific recombinase [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 298 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 91/304 (29%), Positives = 155/304 (50%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ER L++ TL +Y D + +L + T Q +++ +++R Sbjct: 9 EQFLDALWLERNLAENTLSAYRRDLSMVVAWLHHRGKTLATAQA------DDLQTLLAER 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + R LS ++ F ++L + K + + + K LP+ L+E Q L+ Sbjct: 63 VEGGYKATTSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQVERLL 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L+ ++ R+ A+L +LY GLR+SE + LT +I Q +R+ GKG+K R Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VPL + Y + P+ LN ++I + LF R + + F I+ G+ Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + ++++ Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHE 292 Query: 316 QTHP 319 Q HP Sbjct: 293 QHHP 296 >gi|326791364|ref|YP_004309185.1| integrase family protein [Clostridium lentocellum DSM 5427] gi|326542128|gb|ADZ83987.1| integrase family protein [Clostridium lentocellum DSM 5427] Length = 296 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 89/287 (31%), Positives = 152/287 (52%), Gaps = 16/287 (5%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T+QSYE D R F Y EE+ I+ I+ L+ +I+ ++ + ++ ++ R+L+ Sbjct: 22 TVQSYERDLRYF----ERYVEEQGKIE-IQSLTDQQIKVYLEHMKDEEKSTATISRTLAS 76 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 I++F +YL K ++ E+ + K PR L+++Q +L++ +TK I Sbjct: 77 IRAFCQYLVKEQVLNENPARLIALPKIEKKAPRILSQEQISSLLEQP---NKKDTKGI-- 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ A+L LLY G+R+SE +SL +I Q + I K R +P+ S A+ Y Sbjct: 132 RDRAMLELLYATGIRVSELISLKTTDINLQQGYI-ICRDAQKERTIPIGKSAISALNMYL 190 Query: 215 DLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 L + N + LF G P+ F + ++ + T H LRHSFA H Sbjct: 191 GEVRHILIRSANDK-TLFVNCNGYPMTRQGFWKILKTYANAAHIQGEITPHMLRHSFAAH 249 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 L+ NG +L+S+Q +LGH +STTQ+Y ++N + + +M++Y++THP Sbjct: 250 LVQNGANLKSVQQMLGHSDISTTQVYMHLNKET--EELMDVYNKTHP 294 >gi|114705350|ref|ZP_01438258.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506] gi|114540135|gb|EAU43255.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506] Length = 323 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 87/291 (29%), Positives = 147/291 (50%), Gaps = 16/291 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ + +ERG + TLQ+Y D FL + + + IRA+++ Sbjct: 20 EAFLEMMAVERGAADNTLQAYARDLDAARSFLKPHG-------GLMRADSDAIRAYLTSL 72 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + + + R LS ++ ++L T+ + +K LP+ ++E + L+ Sbjct: 73 SAEGLSESTRSRRLSALRQLYRFLYTEGRRTDDPTSPIEGARKKRPLPKVMSEDEVDRLL 132 Query: 139 DNVLLHTSHETKWIDARNSAI-----LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 D T+ +R AI + LLY GLR+SE +SL +++ T+ + GK Sbjct: 133 DLAEAETNDAELSPSSRVRAIRLRVLVELLYATGLRVSELVSLPKSMLVNRARTITVLGK 192 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRG-IRGKPLNPGVFQRYIRQLR 251 G+K R+VP+ + R++ L+ Y LN + P LF L+ VF R ++ L Sbjct: 193 GNKERLVPIGAAARES-LDAYGQALKAAGLNNEGPWLFPADSESGHLSRQVFARELKGLA 251 Query: 252 RYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G+ + + H LRH+FA+HLL NG DLR++Q +LGH +STTQIYT+V Sbjct: 252 ARTGISAAKISPHVLRHAFASHLLQNGADLRAVQELLGHADISTTQIYTHV 302 >gi|258620859|ref|ZP_05715893.1| Tyrosine recombinase xerD [Vibrio mimicus VM573] gi|258586247|gb|EEW10962.1| Tyrosine recombinase xerD [Vibrio mimicus VM573] Length = 302 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 92/304 (30%), Positives = 155/304 (50%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + +ERGL++ T+ SY D + L ++A + + + +S++ ++ + + Sbjct: 13 EQFLDAMWLERGLAENTVASYRNDLSKLLEWMAQHQYQ------LDFISFSGLQEYQNWL 66 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q S R LS I+ +YL + K+ + + + K LP+ L E Q Sbjct: 67 SEQNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLISPKLPTRLPKDLTEAQV---- 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL I+ R+ A+L LLY GLR++E +SLT +N+ Q +R+ GKG K R Sbjct: 123 -EALLSAPDPQTPIELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVIGKGGKER 181 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VP+ + + I E + L L Q +F RG+ + F I+ + Sbjct: 182 LVPMGENAIEWI-ETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAEI 240 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + H LRH+FATHLL+ G DLR +Q +LGH LSTTQIYT+V ++ + ++++ Sbjct: 241 DVELLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHN 296 Query: 316 QTHP 319 + HP Sbjct: 297 EHHP 300 >gi|52424801|ref|YP_087938.1| site-specific tyrosine recombinase XerD [Mannheimia succiniciproducens MBEL55E] gi|52306853|gb|AAU37353.1| XerC protein [Mannheimia succiniciproducens MBEL55E] Length = 298 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 91/301 (30%), Positives = 153/301 (50%), Gaps = 17/301 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L + +GLS T+QSY D L L+ + + + +++ L ++++AF+ +R Sbjct: 11 FLNELWLGKGLSDNTVQSYRLD----LTALSQWLQGQG--KSLETLDSSDLQAFLGERVD 64 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q S R LS ++ +YL + T+ + + K LP+ L E+Q Sbjct: 65 QGYKATSTARMLSAMRKLFQYLYQESYRTDDPSAILSSPKLPGRLPKYLTEQQV-----G 119 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LL+ ++ R+ A+L LLY GLR++E ++L+ NI +Q +R+ GKG+K RIV Sbjct: 120 DLLNAPSTDIPLELRDKAMLELLYATGLRVTELVTLSTDNINLEQGVVRVIGKGNKERIV 179 Query: 201 PLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL- 258 P+ + ++ P LN +F R + F I+ + Sbjct: 180 PMGEEASYWVGQFILYGRPMLLNGQSSDVIFPSKRALQMTRQTFWHRIKHYAILADIDTD 239 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 S + H LRH+FATHL+++G DLR +Q +LGH LSTTQIYT+V + + ++++ H Sbjct: 240 SLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKER----LKRLHEKYH 295 Query: 319 P 319 P Sbjct: 296 P 296 >gi|296140077|ref|YP_003647320.1| tyrosine recombinase XerD [Tsukamurella paurometabola DSM 20162] gi|296028211|gb|ADG78981.1| tyrosine recombinase XerD [Tsukamurella paurometabola DSM 20162] Length = 324 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 89/309 (28%), Positives = 143/309 (46%), Gaps = 18/309 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L +L +ERG + TL SY D ++ +L ++ I + ++ T++ F+ Sbjct: 22 RAYLDHLTVERGAAANTLSSYRRDLDRYREYLV-----ELGIDDLASVTSTQVSGFLVAL 76 Query: 79 RTQKIG-----DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 R G S RSL ++ ++ +T +R + LP+AL+ Sbjct: 77 REGSDGRPPLAASSAARSLIAVRGLHRFAAAEGLTASDVAREVRPPAPAKRLPKALSIDT 136 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 + L++ +T R+ A+L LLY CG RISE +L +I ++ + GK Sbjct: 137 VIALLEAAGGDGESDTPS-RLRDRALLELLYSCGARISEVTALDVDDIDVQSRSVVLMGK 195 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 G K R+VP+ AI Y L LF +RG L+ + + Sbjct: 196 GGKQRVVPIGRPALAAIEAYLVRGRPSLVKKSNPALFLNVRGGRLSRQSAWQVLATAAER 255 Query: 254 LGL---PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ + + HTLRHSFATHLL G D+R +Q +LGH ++TTQ+YT V + + Sbjct: 256 AGIDTDAVHVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTVQ----AL 311 Query: 311 MEIYDQTHP 319 E+Y Q HP Sbjct: 312 REVYAQAHP 320 >gi|261379271|ref|ZP_05983844.1| tyrosine recombinase XerC [Neisseria subflava NJ9703] gi|284797703|gb|EFC53050.1| tyrosine recombinase XerC [Neisseria subflava NJ9703] Length = 298 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 86/300 (28%), Positives = 149/300 (49%), Gaps = 25/300 (8%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS--KRRTQK-IG 84 ++G S+ T+ +Y D + + L E + + R F++ K+ +QK + Sbjct: 20 QQGKSQHTVSAYRRDLSELMRLLPDNLENGLPTR----------RDFVAVLKKLSQKGLS 69 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 + SL R LS + + +L + ++ NM+ + LP+AL ++ ++++L H Sbjct: 70 ESSLARKLSAWRQYCSWLVQIEVMESDPTFNMKAPRLPERLPKALLQEP----LNHILDH 125 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + + +D R+ A+ L+YG GLR+SE L +I+ D+ + + GKG K R VPL Sbjct: 126 APVDDE-LDVRDKAMFELMYGSGLRLSEIQGLNLNSIVLDEGWVSVNGKGGKQRQVPL-- 182 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 V K+I D + + LF G L Q+ ++ +G + H Sbjct: 183 -VGKSIAALRDYLAVRIAKEGEQALFTNKNGGRLGQRQIQKRLQAWAVRVGSASHISPHM 241 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 +RHS+ATHLL GD+R++Q +LGH LS TQ+YT ++ D + +YD+ HP +K Sbjct: 242 MRHSYATHLLQASGDIRAVQELLGHSNLSATQVYTKLDF----DHLARVYDEAHPRAKRK 297 >gi|269120433|ref|YP_003308610.1| integrase family protein [Sebaldella termitidis ATCC 33386] gi|268614311|gb|ACZ08679.1| integrase family protein [Sebaldella termitidis ATCC 33386] Length = 307 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 89/306 (29%), Positives = 150/306 (49%), Gaps = 13/306 (4%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 L++ + +L E+ G S T++ Y D QF+ +++ E I ++ +R+ Sbjct: 10 LIEPLEKFLHFQEVILGKSYNTIRGYRKDITQFIDYISGNEE----IFDYNKVEVFTVRS 65 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 FI+ ++G RS+ R +S +++F YLK++ I + ++ + K LP L K Sbjct: 66 FIAYSNNNEVGKRSINRKISALRTFFAYLKEQNIVEANKLIYVNMPKFEKELPTVLT-KD 124 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 + + NV+ +K R+ I+ LY GLR SE +SL+ I ++ +R+ GK Sbjct: 125 DINKLRNVI----DISKVTGIRDRLIIEFLYSSGLRSSELVSLSELMINLEEREVRVLGK 180 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 G+K R+ + RK +Y + +F RG+ + +R I Sbjct: 181 GNKERVTFFSENARKWYEKYISAKRNEYKNYTPNIVFVNSRGERITTRSLRRLIADYAEK 240 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ T H RHSFAT LL+N D+R +Q +LGH +STTQ+YT+V+ + EI Sbjct: 241 AGINKEVTPHVFRHSFATTLLNNKVDIRYLQELLGHSSISTTQVYTHVSKA----LLREI 296 Query: 314 YDQTHP 319 Y + HP Sbjct: 297 YIKAHP 302 >gi|163839570|ref|YP_001623975.1| XerD/RipX family integrase/recombinase [Renibacterium salmoninarum ATCC 33209] gi|162953046|gb|ABY22561.1| integrase/recombinase (XerD/RipX family) [Renibacterium salmoninarum ATCC 33209] Length = 312 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 97/317 (30%), Positives = 147/317 (46%), Gaps = 30/317 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +LQ+L +ERGL+ TL +Y D ++ FLA ++T Q+S + F Sbjct: 6 REYLQHLAVERGLAANTLAAYRRDLTRYTNFLA-----SQGVRTPEQISRKNVTDFAQAL 60 Query: 79 RT-----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 T +G RS R + ++ K+ TT + LP+A++ + Sbjct: 61 STGSDGATALGVRSAARCIVALRGMHKFWALEATTTADPASEVHPPMAGRRLPKAISVAE 120 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM------DDQS- 186 V +L + +T R+ A+L LY G RISEA+ L +++ +DQS Sbjct: 121 ----VTKILEASGSDTA-TGLRDRALLEFLYSTGARISEAIGLDVDDVVGANSVGNDQSG 175 Query: 187 --TLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLP-LFRGIRGKPLNPGV 242 +R+ GKG K RIVPL +AI Y P P LF +RG L+ Sbjct: 176 PAVVRLFGKGSKERIVPLGSYGARAIEAYLVRGRPLLSATGKATPALFLNVRGGRLSRQS 235 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 ++ + + HTLRHSFATHLL G D+R +Q +LGH ++TTQ+YT V Sbjct: 236 AWAILKTAAEKAEISKVVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVT 295 Query: 303 SKNGGDWMMEIYDQTHP 319 + D + E+Y HP Sbjct: 296 A----DTLREVYASAHP 308 >gi|114778675|ref|ZP_01453487.1| tyrosine recombinase XerD [Mariprofundus ferrooxydans PV-1] gi|114551037|gb|EAU53599.1| tyrosine recombinase XerD [Mariprofundus ferrooxydans PV-1] Length = 299 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 85/298 (28%), Positives = 149/298 (50%), Gaps = 18/298 (6%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 LQ L + RG S T SY D L +++ + ++ Q I +++K Sbjct: 16 LQRLAMLRGWSPQTTSSYRSD---LLHADSYFVDHHTSLM---QADGKAILDYLAKLGRD 69 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 + +++R S + ++ +L+ + + + ++ L+KS LP+ ++E V+ + Sbjct: 70 GMKPTTIQRRRSALSTWFTWLQDQNLREDHPARHLPKLRKSRPLPKMMSEHD----VERL 125 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 L E + R+ +L LLY G+R+SE +SLT + D LR+ GKGDK R++P Sbjct: 126 LAAPETEDP-VGLRDRCMLELLYATGVRVSELVSLTRGQVEMDAGLLRVIGKGDKERLIP 184 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 + + ++ L P LF G G + F I++ G+ + Sbjct: 185 FGEEAGQWLQQWLLLRPAKPASPY---LFAGRGGHAMTRQNFWLRIKRYATMAGIMPLPS 241 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HTLRH+FATHLL++G DLR++Q +LGH ++TT+IYT+V+ M ++ + +HP Sbjct: 242 PHTLRHAFATHLLNHGADLRAVQMLLGHAHVTTTEIYTHVSRAR----MHDLVNHSHP 295 >gi|294648993|ref|ZP_06726441.1| site-specific tyrosine recombinase XerD [Acinetobacter haemolyticus ATCC 19194] gi|292825128|gb|EFF83883.1| site-specific tyrosine recombinase XerD [Acinetobacter haemolyticus ATCC 19194] Length = 333 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/234 (34%), Positives = 127/234 (54%), Gaps = 9/234 (3%) Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 RS+ R LS ++ F K+L+++K+ ++ + + + K +LP+ L+E+ L++ + T Sbjct: 107 RSIARCLSALRQFYKFLREQKLREDNPVASHHSPKIGRALPKDLSEQDVEALINAPDIST 166 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 + + R+ A+ +LY CGLR+SE L+L + I Q +RI GKG+K R+VPL Sbjct: 167 T-----LGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGFVRITGKGNKERLVPLGQY 221 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 I +Y L + LF G ++ F I++ + + HTL Sbjct: 222 ACDWIEKYLAESRPQLYKSNTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAELSPHTL 281 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 RH+FATHLL++G DLR +Q +LGH LSTTQIYT+V M ++ Q HP Sbjct: 282 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQHR----MQALHHQYHP 331 >gi|170729959|ref|YP_001775392.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa M12] gi|167964752|gb|ACA11762.1| integrase/recombinase [Xylella fastidiosa M12] Length = 324 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 98/307 (31%), Positives = 152/307 (49%), Gaps = 24/307 (7%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L L I+ GLS+ TL SY D L LA + + + L+ + +++ R Q Sbjct: 31 LDALWIKHGLSRHTLNSYRRD----LEGLARWNNGRAG--PLATLTPPALLDYLTWRTQQ 84 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 S R LS +++F Y + ++ + + + LP+AL E Q ++ + Sbjct: 85 HYSPLSNARLLSVLRTFFSYAVECGWRNDNPSTLLAHPVLPHPLPKALTESQ----IEAL 140 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 L S ET RN A+L L+Y GLR+SE ++L + Q LRI GKG K R+VP Sbjct: 141 LAAPSIETP-EGLRNRAMLELMYAAGLRVSELITLPVAMLNRRQGVLRITGKGGKERLVP 199 Query: 202 LLPSVRKAILEYYDLC--------PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 L + + Y + P + + +PLF K L+ F R+I+ Sbjct: 200 LGEESQHWLQRYLEQARPSLAADKPIPADSDGDVPLFINTNLKRLSRQQFWRWIKHYAAL 259 Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 G+ P + H LRHSFATHLL++G DLR++Q +LGH +STTQIYT + ++ + + Sbjct: 260 AGIAPNKVSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYTLIARQH----LQQ 315 Query: 313 IYDQTHP 319 ++ Q HP Sbjct: 316 LHAQHHP 322 >gi|54310573|ref|YP_131593.1| site-specific tyrosine recombinase XerC [Photobacterium profundum SS9] gi|46915016|emb|CAG21791.1| putative integrase/recombinase XerC [Photobacterium profundum SS9] Length = 313 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 89/306 (29%), Positives = 157/306 (51%), Gaps = 16/306 (5%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 L K Q + + + ER LS T Q+Y+ RQ ++T T+ + +R Sbjct: 17 LEKPLQFFYEYIRSERELSLHTQQNYK---RQLSTIAEQLVSFEVTDWTMVDAGW--VRQ 71 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 SK + S+ LS ++SF +L ++ I + + +K+ LP+ L+ + Sbjct: 72 IASKGMRDGLKASSISMRLSALRSFFDFLVQKDILKANPAKGVAAPRKARPLPKNLDVDE 131 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 +D +L + +E + R+ A++ L+YG GLR++E +SL ++I + +R+ GK Sbjct: 132 ----MDQLL--SVNEDDPLSIRDRAMMELMYGAGLRLAELVSLNVRDISLSKGDIRVIGK 185 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 GDK RIVP R+ + + + L ++ LF G ++ Q+ + + + Sbjct: 186 GDKERIVPFAGLAREWVANWLKVRGA-LASGDEVGLFVSKLGTRISTRNVQKRMAEWGQK 244 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 + H LRHSFATH+L + GDLR++Q +LGH LSTTQIYT+++ ++ + ++ Sbjct: 245 QAVSSHINPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LAKV 300 Query: 314 YDQTHP 319 YD+ HP Sbjct: 301 YDEAHP 306 >gi|116625461|ref|YP_827617.1| tyrosine recombinase XerD subunit [Candidatus Solibacter usitatus Ellin6076] gi|116228623|gb|ABJ87332.1| tyrosine recombinase XerD subunit [Candidatus Solibacter usitatus Ellin6076] Length = 302 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 88/292 (30%), Positives = 140/292 (47%), Gaps = 15/292 (5%) Query: 11 SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70 S L + +L IE+GLS ++ +Y D +F+ F E E Sbjct: 9 SAVLCGQTAAFLNFCRIEKGLSPNSISAYSADLARFVQFTGDVQEPP---------GVPE 59 Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 IR +I + +RS+ R L+ +++F +L + ++R ++ ++P+ LN Sbjct: 60 IRQYIDHLYQTGLSNRSVGRHLTTLRNFYGFLLREGKVATDPTEHLRTPRQWQTIPKYLN 119 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 ++ ++ L K + R+ A++ +LY GLR+SE L ++ + LR Sbjct: 120 LEEIERIIQAPDL-----AKPLGLRDRAMMEVLYASGLRVSELCKLGIGDLDLEYQVLRT 174 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 GKG+K R+VP+ + A+ Y + P L LF RG + F + + Sbjct: 175 TGKGNKQRLVPVGKAAVLAVRAYLESGRPGLLKGRASRYLFVTARGGCMTRQGFWKLLAA 234 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 R G+ T H LRHSFATHLL G DLRS+Q +LGH +STTQIYT+V Sbjct: 235 YGRKAGIFHGLTPHVLRHSFATHLLEGGADLRSVQVMLGHADISTTQIYTHV 286 >gi|168242831|ref|ZP_02667763.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194449828|ref|YP_002047028.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194408132|gb|ACF68351.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205338181|gb|EDZ24945.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 298 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 92/304 (30%), Positives = 154/304 (50%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ER L++ TL +Y D + +L + T Q +++ +++R Sbjct: 9 EQFLDALWLERNLAENTLSAYRRDLSMVVAWLHHRGKTLATAQA------DDLQTLLAER 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ F ++L + K + + + K LP+ L+E Q L+ Sbjct: 63 VEGGYKATSSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQVERLL 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L+ ++ R+ A+L +LY GLR+SE + LT +I Q +R+ GKG+K R Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGMVRVIGKGNKER 177 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VPL + Y + P+ LN ++I + LF R + + F I+ G+ Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292 Query: 316 QTHP 319 Q HP Sbjct: 293 QHHP 296 >gi|254463512|ref|ZP_05076928.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2083] gi|206680101|gb|EDZ44588.1| tyrosine recombinase XerD [Rhodobacteraceae bacterium HTCC2083] Length = 314 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 98/316 (31%), Positives = 153/316 (48%), Gaps = 24/316 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +L E G + T +Y D + F +L + K++ + + + A++ Sbjct: 13 TFLDAQAAELGAATNTQLAYARDLKDFAEYL---SGRKLSFENA---ARDHVEAYLIFCD 66 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q + + R LS IK ++ + +++ + + K LP+ LN + L+ Sbjct: 67 AQGLAKSTRARRLSAIKQLYRFGFEEGWRSDNPAIQIAGPGKDKRLPKTLNMGEVDGLLA 126 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + T + RN+ ++ LLY G+R+SE +SL + S L I+GKGDK R+ Sbjct: 127 AARVVGRSPTDRL--RNTCLMELLYATGMRVSELVSLPISAARGNPSMLLIRGKGDKERM 184 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-------LF--RGIRGKPLNPGVFQRYIRQL 250 VPL P R A+ E+ + DL +L LF RG G L F I++L Sbjct: 185 VPLSPPARDALTEWLETLD-DLQEAGRLKGKAVSRFLFPSRGKEGH-LTRHRFYILIKEL 242 Query: 251 RRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 + G+P + T HTLRH+FATHLL NG DLRSIQ++LGH ++TT+IYT+V Sbjct: 243 SVHAGVPPAKVTPHTLRHAFATHLLENGADLRSIQTLLGHADVATTEIYTHVLEAR---- 298 Query: 310 MMEIYDQTHPSITQKD 325 + E+ Q HP D Sbjct: 299 LQELVLQHHPLANDDD 314 >gi|167630281|ref|YP_001680780.1| tyrosine recombinase xerc, putative [Heliobacterium modesticaldum Ice1] gi|167593021|gb|ABZ84769.1| tyrosine recombinase xerc, putative [Heliobacterium modesticaldum Ice1] Length = 340 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 90/302 (29%), Positives = 145/302 (48%), Gaps = 13/302 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ L E + T +Y D Q + L + + + ++S +R I++ Sbjct: 47 YLRYLAAEGNHAIHTRSAYASDLAQLIELL---EQTDSGVPRLPEVSADRLRLCITRLYA 103 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + SL R L+ + F +YL + T + +++ K LP+ L+E + L+ Sbjct: 104 VGMERSSLARKLAAWRGFFRYLVREGQLTSHPMKRLKSPKLGRPLPKTLSESEVSCLLSA 163 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + + RN A++ L Y GLR++E L ++ +R+ GKG K RIV Sbjct: 164 A---ERRGDEPLALRNLAMVELFYASGLRVAELCGLDLGSVDAGLGYVRVLGKGGKERIV 220 Query: 201 PLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 P+ +AI Y L + LF RG+ L+ Q + ++ L Sbjct: 221 PVGEQALEAISRYLKQGRPALARRQREVSPALFLNHRGRRLSVRGAQDILSRIADGAALE 280 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + HTLRH+FATHLL G DLRS+Q +LGH +LSTTQIYT+V+++ + EIY +T Sbjct: 281 RGISPHTLRHTFATHLLDGGADLRSVQEMLGHAKLSTTQIYTHVSAER----LKEIYHKT 336 Query: 318 HP 319 HP Sbjct: 337 HP 338 >gi|281357729|ref|ZP_06244215.1| tyrosine recombinase XerD [Victivallis vadensis ATCC BAA-548] gi|281315676|gb|EFA99703.1| tyrosine recombinase XerD [Victivallis vadensis ATCC BAA-548] Length = 299 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 97/302 (32%), Positives = 143/302 (47%), Gaps = 16/302 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 ++ L ERGLS T +Y D +F +L TE + Q+ I ++ R Sbjct: 9 FIDYLVTERGLSSNTTAAYRSDLEEFRDWL---TERGF--KEWSQVDREAILDYLDAERD 63 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 +L R L +K ++L + I + M + K LP L+E + VD Sbjct: 64 LGRETATLARRLVAVKMLSRFLTEEGILKKDVTAVMDSPKLWRILPDFLSEAE----VDA 119 Query: 141 VLLHTSHETKW-IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 L K + RN AIL +LY GLR+SE L + D LR+ GKG K RI Sbjct: 120 FLKAFPASVKEPFEMRNRAILEVLYSSGLRVSELARLPLTAVDFDNELLRVVGKGSKTRI 179 Query: 200 VPLLPSVRKAILEYY-DLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 VP+ + + Y D+ P N + P +F G+PLN ++ G+ Sbjct: 180 VPIGKVALRTLRRYLADVRPLLAEKNPRSPYVFLSKSGRPLNREWIWNVVKVAAARAGIH 239 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + HTLRHSFA+HLL++G DLR IQ +LGH +STT+IYT+++S + I+ + Sbjct: 240 KNIHPHTLRHSFASHLLAHGADLRVIQEMLGHADISTTEIYTHIDSNR----LAAIHHKF 295 Query: 318 HP 319 HP Sbjct: 296 HP 297 >gi|26991906|ref|NP_747331.1| site-specific tyrosine recombinase XerC [Pseudomonas putida KT2440] gi|34222832|sp|Q88CF1|XERC_PSEPK RecName: Full=Tyrosine recombinase xerC gi|24987029|gb|AAN70795.1|AE016723_7 integrase/recombinase XerC [Pseudomonas putida KT2440] Length = 299 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 94/316 (29%), Positives = 151/316 (47%), Gaps = 47/316 (14%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + +L ER +S+ T Q Y D + + + E+ I + L ++R I++ Sbjct: 6 EAYCAHLRNERQVSEHTSQGYRRDLEKVIAYC-----EEHGIADWQALQIQQLRQLIARL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 RSL R LS ++ +YL + + + K LP+ L+ +AL L+ Sbjct: 61 HHHGQSPRSLARLLSAVRGLYRYLNREGLCQHDPANGLSAPKGERRLPKVLDTDRALQLL 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + + +I R+ AIL L Y GLR+SE +L ++ +++ GKG K R Sbjct: 121 DGGV-----DDDFIARRDQAILELFYSSGLRLSELTNLDLDHLDLAAGLVQVLGKGGKAR 175 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF---------QRYIRQ 249 ++P+ R+A+ +Y L RGI G P + VF R +R Sbjct: 176 VLPVGRKAREALQAWYRL--------------RGI-GNPRDRAVFITRQGNRISPRAVR- 219 Query: 250 LR------RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 LR R LG L H LRHSFA+H+L + DLR++Q +LGH +STTQIYT+++ Sbjct: 220 LRVKVAGERELGQHLHP--HMLRHSFASHVLESSQDLRAVQEMLGHADISTTQIYTHLDF 277 Query: 304 KNGGDWMMEIYDQTHP 319 ++ + +YD HP Sbjct: 278 QH----LAAVYDSAHP 289 >gi|71274794|ref|ZP_00651082.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Dixon] gi|71897599|ref|ZP_00679844.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] gi|71902531|ref|ZP_00684453.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] gi|71164526|gb|EAO14240.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Dixon] gi|71727745|gb|EAO30016.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] gi|71732502|gb|EAO34555.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] Length = 324 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 98/307 (31%), Positives = 152/307 (49%), Gaps = 24/307 (7%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L L I+ GLS+ TL SY D L LA + + + L+ + +++ R Q Sbjct: 31 LDALWIKHGLSRHTLNSYRRD----LEGLARWNNGRAG--PLATLTPPALLDYLTWRTQQ 84 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 S R LS +++F Y + ++ + + + LP+AL E Q ++ + Sbjct: 85 HYSPLSNARLLSVLRTFFSYAVECGWRNDNPSTLLAHPVLPHPLPKALTESQ----IEAL 140 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 L S ET RN A+L L+Y GLR+SE ++L + Q LRI GKG K R+VP Sbjct: 141 LAAPSIETP-EGLRNRAMLELMYAAGLRVSELVTLPVAMLNRRQGVLRITGKGGKERLVP 199 Query: 202 LLPSVRKAILEYYDLC--------PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 L + + Y + P + + +PLF K L+ F R+I+ Sbjct: 200 LGEESQHWLQRYLEQARPSLAADKPIPADSDGDVPLFINTNLKRLSRQQFWRWIKHYAAL 259 Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 G+ P + H LRHSFATHLL++G DLR++Q +LGH +STTQIYT + ++ + + Sbjct: 260 AGIAPNKVSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYTLIARQH----LQQ 315 Query: 313 IYDQTHP 319 ++ Q HP Sbjct: 316 LHAQHHP 322 >gi|146299694|ref|YP_001194285.1| phage integrase family protein [Flavobacterium johnsoniae UW101] gi|146154112|gb|ABQ04966.1| phage integrase family protein [Flavobacterium johnsoniae UW101] Length = 297 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 86/303 (28%), Positives = 153/303 (50%), Gaps = 14/303 (4%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 +Q + L+ E+ S T+ +Y D L F + +E+ +I +++Y++IR++I Sbjct: 5 KQAFQDYLQFEKKYSPHTVNAYLND----LGFFEEFNKERFEQDSIERVNYSQIRSWIVF 60 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 Q + + S+ R ++ +K+F K+L K K S +L + LK + +EK+ Sbjct: 61 LVDQGVSNVSVNRKMASLKAFYKFLLKIKQIEVSPMLKHKALKTPKIVQIPFSEKE---- 116 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 V +++ + + R+ I+ L Y G+R +E + L +N+ +++ GK K Sbjct: 117 VSDLMFGVESPIGFEEVRDKLIVDLFYTTGMRRAELIGLMLKNVDLSSGVVKVLGKRSKE 176 Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 RIVPLLP V I Y + D ++ + F +G L+ R I + Sbjct: 177 RIVPLLPIVADQINLYIKEREQLDQIVDSEY-FFISKKGLKLSESFVYRLINCYFSRVSE 235 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + + H LRH+FATHLL+NG DL S++ +LGH L++TQ+YT+ N + ++Y + Sbjct: 236 KVKKSPHVLRHTFATHLLNNGADLNSVKELLGHSSLASTQVYTH----NSLAELKKVYSE 291 Query: 317 THP 319 HP Sbjct: 292 AHP 294 >gi|260912682|ref|ZP_05919168.1| tyrosine recombinase XerC [Pasteurella dagmatis ATCC 43325] gi|260633060|gb|EEX51225.1| tyrosine recombinase XerC [Pasteurella dagmatis ATCC 43325] Length = 296 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 99/305 (32%), Positives = 151/305 (49%), Gaps = 26/305 (8%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKI 83 L IER +S TL +Y+ RQ + E +T + ++++ + +R +++ +T K+ Sbjct: 12 LRIERQVSPHTLSNYQ---RQLNRIVQILNENGMT--SWQEVTPSVVRFILAESSKTDKL 66 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 ++SL LS ++ FL YL ++ + + K+ LP+ ++ +Q L+ N Sbjct: 67 HEKSLALRLSALRRFLTYLVQQDELKVNAATGISAPKQGRHLPKNIDAEQVQKLLSN--- 123 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 S E ID R+ AIL LLY GLR+SE L +I +R+ GKG+K RIVP Sbjct: 124 -DSKEP--IDIRDRAILELLYSSGLRLSELQGLNLNSINTRVREVRVIGKGNKERIVPFG 180 Query: 204 PSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 AI ++ + P D LF G L Q+ + GL Sbjct: 181 RYASHAIQQWLKVRLLFNPKDD------ALFVSQLGNRLTHRTIQKRLEVWGIKQGLNSH 234 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHSFATH+L DLR++Q +LGH LSTTQIYT++N ++ D +YD HP Sbjct: 235 LNPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAD----VYDSAHP 290 Query: 320 SITQK 324 +K Sbjct: 291 RAKRK 295 >gi|256420742|ref|YP_003121395.1| integrase family protein [Chitinophaga pinensis DSM 2588] gi|256035650|gb|ACU59194.1| integrase family protein [Chitinophaga pinensis DSM 2588] Length = 314 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 95/313 (30%), Positives = 160/313 (51%), Gaps = 27/313 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +L +++E+ S T +Y+ D QF IFL + Y + +++Q I S+ +R +++ Sbjct: 12 FLAYIQLEKRYSAHTFTAYQQDLTQFFIFLRSQYGD--VSLQGI---SHLHVRTWLAWLM 66 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + I +S+ R +S +KSF KY + + S + + K LP ++EK + D Sbjct: 67 EEGIVAKSVNRKISTLKSFFKYAMRHGVVVTSPMTKVTAPKTGKRLPGFIDEKGMEAVED 126 Query: 140 NVLLHTSHETKWIDARN------SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 N + E + I A + I LLY G+R+SE + L +++ TL++ GK Sbjct: 127 NRSMRRGQEGRPIFADDLEGKTHRLIFELLYHTGIRLSELIGLQERHVDISNLTLKVLGK 186 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQL-R 251 G+K RI+P+ ++R I Y + L + + L R GK L P RY+ + + Sbjct: 187 GNKERIIPISKNLRDEIKGYRVMRDKALEMPDKEVLLVNPRSGKKLYP----RYVYNVVK 242 Query: 252 RYLGLPLSTT-----AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 YL TT H LRH+FATHL +NG DL +++ +LGH L++TQ+YT+ N Sbjct: 243 GYLTDHEITTISRRSPHILRHTFATHLTNNGADLNAVKELLGHASLASTQVYTH----NS 298 Query: 307 GDWMMEIYDQTHP 319 + + + Y + HP Sbjct: 299 IEKLKDAYRKAHP 311 >gi|237727927|ref|ZP_04558408.1| site-specific tyrosine recombinase XerC [Citrobacter sp. 30_2] gi|226910376|gb|EEH96294.1| site-specific tyrosine recombinase XerC [Citrobacter sp. 30_2] Length = 300 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 91/298 (30%), Positives = 148/298 (49%), Gaps = 17/298 (5%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L+ L +ER LS +TL +Y+ RQ +A E +Q+ +Q +R+F + R + Sbjct: 14 LRYLGVERQLSPITLLNYQ---RQLDAIIALAGE--TGLQSWQQCDAAMVRSFAVRSRRK 68 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 +G SL LS ++SF +L + + ++ K LP+ ++ L+D Sbjct: 69 GLGPASLALRLSALRSFFDWLVNQGELKANPAKSVSAPKAPRHLPKNIDVDDVNRLLDID 128 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 L + R+ A+L ++YG GLR+SE + L +++ D + + GKG K R +P Sbjct: 129 L------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLP 182 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 + + I + DL L + LF GK ++ Q+ + GL Sbjct: 183 IGRNAVAWIEHWLDLR--GLFGSDDDALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVH 240 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ + +YD HP Sbjct: 241 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHP 294 >gi|260551079|ref|ZP_05825283.1| tyrosine recombinase XerD [Acinetobacter sp. RUH2624] gi|260405846|gb|EEW99334.1| tyrosine recombinase XerD [Acinetobacter sp. RUH2624] Length = 306 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 81/240 (33%), Positives = 130/240 (54%), Gaps = 11/240 (4%) Query: 82 KIGD--RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 KIG RS+ R LS ++ F K+L+++K+ +++ + + K +LP+ L+E+ L+ Sbjct: 74 KIGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVEALIQ 133 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + T+ + R+ A+ +LY CGLR+SE ++L + I Q LRI GKG+K R+ Sbjct: 134 APDITTA-----LGLRDRAMFEVLYACGLRVSELINLRLELINLKQGYLRITGKGNKERL 188 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 VPL + Y + L LF G ++ F I++ + Sbjct: 189 VPLGQYACDWVERYLNDARPQLYKTSTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAE 248 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V M +++++ HP Sbjct: 249 LSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR----MQQLHEKHHP 304 >gi|153008242|ref|YP_001369457.1| site-specific tyrosine recombinase XerD [Ochrobactrum anthropi ATCC 49188] gi|151560130|gb|ABS13628.1| tyrosine recombinase XerD [Ochrobactrum anthropi ATCC 49188] Length = 307 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 92/304 (30%), Positives = 140/304 (46%), Gaps = 42/304 (13%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR--QLSYTEIRAFIS 76 +N+L+ + ERG ++ TL+SY D E ++ + + + IR+ I Sbjct: 8 ENFLEMMSAERGAAENTLESYRRDLEA--------VAEALSARGVNLAEAGADHIRSAID 59 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 T+ S R LS ++ F ++L + + KK LP+ ++ + Sbjct: 60 AMATEGFAATSQARRLSALRQFFRFLYSEGYRQDDPTGTVDAPKKQKPLPKIMSVENVTK 119 Query: 137 LVDNVLLHTSHET----KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 L+D L TS E ++ R A++ LY G+R+SE + L D L + G Sbjct: 120 LLDRAALETSEEAEPAERFKALRLHALIETLYATGMRVSELVGLPVGVARIDHRFLLVCG 179 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY------ 246 KG K R+VPL P R+A+ + L L LP G NP +F + Sbjct: 180 KGSKERMVPLSPKAREALQRF-------LALRDSLP------GSDDNPWLFPAFSESGHL 226 Query: 247 IRQL--RRYLGLPLS-------TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 RQ+ R GL + H LRH+FA+HLL NG DLR++Q +LGH +STTQI Sbjct: 227 ARQVFARELKGLAARAGLSAAAVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQI 286 Query: 298 YTNV 301 YT+V Sbjct: 287 YTHV 290 >gi|324017291|gb|EGB86510.1| tyrosine recombinase XerD [Escherichia coli MS 117-3] Length = 298 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 91/304 (29%), Positives = 157/304 (51%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +E+ L++ TL +Y R + + + +T+ T + +++A +++R Sbjct: 9 EQFLDALWLEKNLAENTLNAYR---RDLSMMVEWLHHRGLTLATAQS---DDLQALLAER 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K + ++ + K LP+ L+E Q L+ Sbjct: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L+ ++ R+ A+L +LY GLR+SE + LT +I Q +R+ GKG+K R Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VPL + Y + P+ LN ++I + LF R + + F I+ G+ Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQILLGHSDLSTTQIYTHVATER----LRQLHQ 292 Query: 316 QTHP 319 Q HP Sbjct: 293 QHHP 296 >gi|331654392|ref|ZP_08355392.1| tyrosine recombinase XerD [Escherichia coli M718] gi|331047774|gb|EGI19851.1| tyrosine recombinase XerD [Escherichia coli M718] Length = 298 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 91/304 (29%), Positives = 157/304 (51%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +E+ L++ TL +Y R + + + +T+ T + +++A +++R Sbjct: 9 EQFLDALWLEKNLAENTLNAYR---RDLSMMVEWLHHRGLTLATAQ---CDDLQALLAER 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K + ++ + K LP+ L+E Q L+ Sbjct: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L+ ++ R+ A+L +LY GLR+SE + LT +I Q +R+ GKG+K R Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VPL + Y + P+ LN ++I + LF R + + F I+ G+ Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292 Query: 316 QTHP 319 Q HP Sbjct: 293 QHHP 296 >gi|15804400|ref|NP_290440.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7 EDL933] gi|15833995|ref|NP_312768.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7 str. Sakai] gi|168750377|ref|ZP_02775399.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4113] gi|168753708|ref|ZP_02778715.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4401] gi|168763936|ref|ZP_02788943.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4501] gi|168768092|ref|ZP_02793099.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4486] gi|168775638|ref|ZP_02800645.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4196] gi|168780710|ref|ZP_02805717.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4076] gi|168801125|ref|ZP_02826132.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC508] gi|195938100|ref|ZP_03083482.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4024] gi|208806813|ref|ZP_03249150.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4206] gi|208813099|ref|ZP_03254428.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4045] gi|208821301|ref|ZP_03261621.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4042] gi|209397621|ref|YP_002273328.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4115] gi|217326194|ref|ZP_03442278.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. TW14588] gi|254795807|ref|YP_003080644.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7 str. TW14359] gi|261225585|ref|ZP_05939866.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str. FRIK2000] gi|261255631|ref|ZP_05948164.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str. FRIK966] gi|291285225|ref|YP_003502043.1| Tyrosine recombinase xerC [Escherichia coli O55:H7 str. CB9615] gi|34222932|sp|Q8X4T6|XERC_ECO57 RecName: Full=Tyrosine recombinase xerC gi|254799334|sp|B5YY58|XERC_ECO5E RecName: Full=Tyrosine recombinase xerC gi|12518679|gb|AAG59004.1|AE005612_7 site-specific recombinase, acts on cer sequence of ColE1, effects chromosome segregation at cell division [Escherichia coli O157:H7 str. EDL933] gi|13364217|dbj|BAB38164.1| site-specific recombinase XerC [Escherichia coli O157:H7 str. Sakai] gi|187768906|gb|EDU32750.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4196] gi|188015455|gb|EDU53577.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4113] gi|189001561|gb|EDU70547.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4076] gi|189358976|gb|EDU77395.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4401] gi|189362670|gb|EDU81089.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4486] gi|189365973|gb|EDU84389.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4501] gi|189376684|gb|EDU95100.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC508] gi|208726614|gb|EDZ76215.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4206] gi|208734376|gb|EDZ83063.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4045] gi|208741424|gb|EDZ89106.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4042] gi|209159021|gb|ACI36454.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4115] gi|209753248|gb|ACI74931.1| putative phosphatase [Escherichia coli] gi|209753250|gb|ACI74932.1| putative phosphatase [Escherichia coli] gi|209753252|gb|ACI74933.1| putative phosphatase [Escherichia coli] gi|209753254|gb|ACI74934.1| putative phosphatase [Escherichia coli] gi|209753256|gb|ACI74935.1| putative phosphatase [Escherichia coli] gi|217322415|gb|EEC30839.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. TW14588] gi|254595207|gb|ACT74568.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str. TW14359] gi|290765098|gb|ADD59059.1| Tyrosine recombinase xerC [Escherichia coli O55:H7 str. CB9615] gi|320191096|gb|EFW65746.1| Tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC1212] gi|320639294|gb|EFX08916.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7 str. G5101] gi|320644679|gb|EFX13729.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H- str. 493-89] gi|320650004|gb|EFX18507.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H- str. H 2687] gi|320655350|gb|EFX23292.1| site-specific tyrosine recombinase XerC [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660976|gb|EFX28419.1| site-specific tyrosine recombinase XerC [Escherichia coli O55:H7 str. USDA 5905] gi|320666100|gb|EFX33114.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7 str. LSU-61] gi|326344267|gb|EGD68027.1| Tyrosine recombinase XerC [Escherichia coli O157:H7 str. 1125] gi|326347905|gb|EGD71619.1| Tyrosine recombinase XerC [Escherichia coli O157:H7 str. 1044] Length = 298 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 91/307 (29%), Positives = 152/307 (49%), Gaps = 17/307 (5%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L + + +L+ L +ER LS +TL +Y+ RQ + F +E +Q +Q +R Sbjct: 3 DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIINFASEN--GLQNWQQCDAAMVR 57 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F + R + +G SL LS ++SF +L + + + K LP+ ++ Sbjct: 58 NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKTPRHLPKNIDVD 117 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 L+D + + R+ A+L ++YG GLR+SE + L +++ + + + G Sbjct: 118 DINRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 KG K R +P+ + I + DL DL + LF GK ++ Q+ + Sbjct: 172 KGSKERRLPIGRNALSWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 GL H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ + Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285 Query: 313 IYDQTHP 319 +YD HP Sbjct: 286 VYDAAHP 292 >gi|124268427|ref|YP_001022431.1| tyrosine recombinase XerC subunit [Methylibium petroleiphilum PM1] gi|124261202|gb|ABM96196.1| tyrosine recombinase XerC subunit [Methylibium petroleiphilum PM1] Length = 335 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 89/313 (28%), Positives = 152/313 (48%), Gaps = 27/313 (8%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 LQ+L +ER LS TL +YE R+ ++ + +R + +R ++++ Sbjct: 39 LQHLRVERRLSAKTLLNYEEAFRRL-----GEAAQRDGV-ALRAVQPHHVRHWMARLHAG 92 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 + RS+ +LS + ++L + + +R + + LP+AL+ A+ L D+ Sbjct: 93 GLAPRSIAIALSAWRGLYRWLGHEGRVALNPVEGLRAPRAAKPLPKALSVDHAVALADHR 152 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQN-----IMDDQSTLRIQGKG 194 + ++AR+ ++ LLYGCGLR++E L +TP I + + GKG Sbjct: 153 QVDGDAR---LEARDRCLVELLYGCGLRVAELVDLDVTPGGGALGWIDRADAEAHVLGKG 209 Query: 195 DKIRIVPLLPSVRKAILEYYD--LCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLR 251 K R VP V +A L D L + P LF G+ L + +++ Sbjct: 210 SKRRSVP----VGRAALAALDDWLAQRGSVAQVDEPALFVSRHGRRLTASQVRTRLKERA 265 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 GLP H LRHS+A+HLL + GDLR++Q +LGH ++TTQ+YT ++ ++ + Sbjct: 266 IQAGLPTHVHPHMLRHSYASHLLQSSGDLRAVQELLGHANITTTQVYTKLDFQH----LA 321 Query: 312 EIYDQTHPSITQK 324 + YD HP +K Sbjct: 322 KAYDAAHPRARKK 334 >gi|307823520|ref|ZP_07653749.1| tyrosine recombinase XerD [Methylobacter tundripaludum SV96] gi|307735505|gb|EFO06353.1| tyrosine recombinase XerD [Methylobacter tundripaludum SV96] Length = 294 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 96/311 (30%), Positives = 156/311 (50%), Gaps = 40/311 (12%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L + +E+GLS+ TL +Y D R F A + ++K I ++ ++ F+ R Sbjct: 10 FLDAVWVEQGLSENTLSAYGSDLRIF----AKWLKDK----PILEVDGGQLSDFLEGRHK 61 Query: 81 QKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + IG+RS R LS ++ F Y +++ I + L + + LP++L+E L Sbjct: 62 EGIGNRSTARILSSLRRFYGYYIRENSIKIDPTAL-IESPHIGQPLPKSLSE-----LDV 115 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 +LL T + R+ +L +LY GLR+SE ++L + I Q +RI GKG+K R+ Sbjct: 116 ELLLDAPEVTNALGFRDRTMLEMLYATGLRVSELVNLKFEQISFRQGVVRIIGKGNKERL 175 Query: 200 VPL-----------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 VP+ + RK IL C + LF R + F I+ Sbjct: 176 VPVGEVAMGWLEEYMVQARKTILGERQ-CDY---------LFVTNRADSMTRQAFWHIIK 225 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 + + + + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT++ + Sbjct: 226 RHAKKAQINKELSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHIARER--- 282 Query: 309 WMMEIYDQTHP 319 + E++ + HP Sbjct: 283 -LKELHSKYHP 292 >gi|33600415|ref|NP_887975.1| site-specific tyrosine recombinase XerD [Bordetella bronchiseptica RB50] gi|33568014|emb|CAE31927.1| integrase/recombinase [Bordetella bronchiseptica RB50] Length = 310 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 87/281 (30%), Positives = 140/281 (49%), Gaps = 14/281 (4%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEK--ITIQTIRQLSYTEIRAFISKRRTQKIG 84 +E GL+ TL +Y D F +L T ++R+ +I A+ + R + Sbjct: 22 LEDGLAANTLAAYRRDLSAFAQWLENPACHPGLATGASLREAGKGDIEAWFAARHAESRA 81 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 + R L+ ++ F + + ++T L + K+ LP+ L+E Q L+ L Sbjct: 82 T-TANRRLAALRRFYAWALRERLTPSDPCLTLVTAKQPPRLPKTLSEAQVDALLQAPDLD 140 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLL 203 T+ R+ A+L LY GLR+SE +S+ ++ ++ +R+ GKG K R+VPL Sbjct: 141 TARGL-----RDRAMLETLYATGLRVSELVSVKALDVSLNEGVVRVVMGKGGKDRLVPLG 195 Query: 204 PSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ--LRRYLGLPLST 260 I Y P L + LF R +P++ F + +++ L + PLS Sbjct: 196 AEAAHWIERYAGSARPELLGARVADALFVTARAEPMSRQAFWQLVKKYALAADIRAPLSP 255 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 H LRH+FATHLL++G DLR +Q +LGH +STTQIYT+V Sbjct: 256 --HVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHV 294 >gi|229822894|ref|ZP_04448964.1| hypothetical protein GCWU000282_00184 [Catonella morbi ATCC 51271] gi|229787707|gb|EEP23821.1| hypothetical protein GCWU000282_00184 [Catonella morbi ATCC 51271] Length = 302 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 93/309 (30%), Positives = 155/309 (50%), Gaps = 26/309 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q++ + L ++ S T+QSY D +F A+ TE+ I + + +RAF++K Sbjct: 10 QDFERYLLLDMNRSANTIQSYGRDLAKFQ---AYLTEQGI--DKVEAIDEVTVRAFLAKL 64 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS +K F +L+K I + + + K+ LP+ L + L+ Sbjct: 65 SQDAYAASSTSRMLSSLKQFFLFLRKEGILETNPMSLVHRPKQGRHLPKVLTASEIEALL 124 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + H R+ AI L+Y GLR++E + L +++ + ++ GKGDK R Sbjct: 125 QAPDTSSPH-----GLRDRAIFELMYATGLRVTELVQLKLEDLHLELGFIQTLGKGDKER 179 Query: 199 IVPLLPSVRKAILEYYD-LCPFDLNLNIQLP---LFRGIRGKPLN-PGVFQRYIRQLRRY 253 +VPL+ + + Y + + P L L +F RGK G++ + L +Y Sbjct: 180 LVPLIDEAIEWLEAYLEQVRPSFLRLAGSASPQEVFLTERGKAFTRQGIW----KNLNKY 235 Query: 254 L---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 + G+ + + H LRHSFATHLL NG DLR +Q +LGH +STTQIYT+++++ + Sbjct: 236 VALAGIKQTVSPHMLRHSFATHLLENGADLRMVQELLGHADISTTQIYTHISTQR----L 291 Query: 311 MEIYDQTHP 319 E+Y + P Sbjct: 292 QEVYRKYFP 300 >gi|156973275|ref|YP_001444182.1| site-specific tyrosine recombinase XerD [Vibrio harveyi ATCC BAA-1116] gi|156524869|gb|ABU69955.1| hypothetical protein VIBHAR_00956 [Vibrio harveyi ATCC BAA-1116] Length = 305 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 90/303 (29%), Positives = 149/303 (49%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + +ERGLS+ TL SY D + LA+ + + I E ++++ Sbjct: 16 EQFLDAMWMERGLSENTLASYRND---LMKLLAWMEQHSYRLDFISLSGLQEYQSYLVDL 72 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 ++ S R LS I+ +Y+ + K+ + + + K LP+ ++E+Q Sbjct: 73 DYKQT---SRARMLSAIRRLFQYIHREKVRADDPSALLVSPKLPQRLPKDISEEQV---- 125 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + LL ++ R+ A+L LLY GLR++E +SLT +N+ Q +R+ GKG K R Sbjct: 126 -DALLDAPDPNDPVELRDKAMLELLYATGLRVTELVSLTMENVSLRQGLVRVTGKGGKER 184 Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ + I + L +F R + + F I+ G+ Sbjct: 185 LVPMGENAVDWIETFIQQGRSALLGETTSDVVFPSKRARQMTRQTFWHRIKYYAVIAGID 244 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL+ G DLR +Q +LGH LSTTQIYT+V ++ + +I+ Q Sbjct: 245 TDQLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIHSQ 300 Query: 317 THP 319 HP Sbjct: 301 HHP 303 >gi|145639433|ref|ZP_01795038.1| tyrosine recombinase [Haemophilus influenzae PittII] gi|145271480|gb|EDK11392.1| tyrosine recombinase [Haemophilus influenzae PittII] Length = 295 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 94/304 (30%), Positives = 151/304 (49%), Gaps = 25/304 (8%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L IER +S T+ +Y+ + LA + I + Q++ + +R +++ + Q + Sbjct: 12 LRIERQMSPHTITNYQHQLDATIKILA-----QQDIHSWTQVTPSVMRFILAESKKQGLK 66 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 ++SL LS ++ FL +L ++ + + K+ LP+ ++ +Q V +L + Sbjct: 67 EKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQ----VQQLLAN 122 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 S E ID R+ AIL L+Y GLR+SE L +I +R+ GKG+K R+VP Sbjct: 123 DSKEP--IDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGR 180 Query: 205 SVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 AI E+ + P D LF G ++ Q+ + L Sbjct: 181 YASHAIQEWLKVRALFNPKDE------ALFVSQLGNRISHRAIQKRLETWGIRQDLNSHL 234 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 H LRHSFATH+L DLR++Q +LGH LSTTQIYT++N ++ + E+YDQ HP Sbjct: 235 NPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEVYDQAHPR 290 Query: 321 ITQK 324 +K Sbjct: 291 AKRK 294 >gi|237749023|ref|ZP_04579503.1| tyrosine recombinase XerD [Oxalobacter formigenes OXCC13] gi|229380385|gb|EEO30476.1| tyrosine recombinase XerD [Oxalobacter formigenes OXCC13] Length = 312 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 88/294 (29%), Positives = 145/294 (49%), Gaps = 15/294 (5%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 +E GLSK TL +Y R+ L+ A + E+ + ++ + + R + Sbjct: 26 LEDGLSKNTLDAY----RRDLLLFARWLEKNCPDIDLLKVDQNHLNDYFWARHAESKAT- 80 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R L+ +K F + + +E+ L ++ K++ P+ L+E Q LL Sbjct: 81 SANRRLTVLKRFYRLQLRLGRISENPCLKLKAAKQAARFPKTLSETQV-----EALLGAP 135 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 + K + R+ A++ L+Y GLR+SE + L + ++ LRI GKG+K R+VP Sbjct: 136 DQEKSLGLRDRAMIELMYASGLRVSELVDLKLVEVGMNEGVLRIIGKGEKTRLVPFGEEA 195 Query: 207 RKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 R + Y D L + LF RG + +F I++ G+ + HTL Sbjct: 196 RVWLERYMQDARSLILAGKMSDYLFVTARGTAMTRQMFWTLIKKYALKSGIHEPLSPHTL 255 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 RH+FATHLL++G DLR +Q +LGH +STTQIYT+V + + +++ HP Sbjct: 256 RHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVAQQR----LKQLHAMHHP 305 >gi|224372664|ref|YP_002607036.1| phage integrase [Nautilia profundicola AmH] gi|223589882|gb|ACM93618.1| phage integrase [Nautilia profundicola AmH] Length = 275 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 97/306 (31%), Positives = 153/306 (50%), Gaps = 47/306 (15%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ L+I +G+SK T ++Y+ D QF EE I + I + +I +F+S Sbjct: 6 EAFLEYLQINKGVSKNTYEAYKRDLLQF--------EEYIK-KPIIEADNMDIISFLSS- 55 Query: 79 RTQKIGD-RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 IG+ RSL R LS I SF + K ++ + ++ K +LP+ L +++ L Sbjct: 56 ----IGNKRSLNRKLSSINSFFDFAYKHGMSDTKH--KIKQAKIPKTLPKFLTKEEILNA 109 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 + N+ KW D R+ +++ +Y GLRISEAL+ +I + + + KG+K Sbjct: 110 IKNI-----KPEKWFDLRDKSLILFIYATGLRISEALNTKISDIENGWVKVTM-AKGEKQ 163 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP----GVFQRYIRQLRRY 253 RIVP+ AI EY P LF KPL+ + ++Y Sbjct: 164 RIVPIAKVALDAIEEYLKKRPCQSEY-----LFVNKDCKPLSRISAFNITKKY------- 211 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 L+ + H LRHSFAT L+ G DLR +Q +LGH L+TTQIYT++ +N D ++ Sbjct: 212 ----LNVSPHVLRHSFATALVLGGADLRVVQELLGHSSLNTTQIYTHIQKENLKDTVI-- 265 Query: 314 YDQTHP 319 + HP Sbjct: 266 --KYHP 269 >gi|42526714|ref|NP_971812.1| integrase/recombinase XerD [Treponema denticola ATCC 35405] gi|41817029|gb|AAS11723.1| integrase/recombinase XerD [Treponema denticola ATCC 35405] Length = 274 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 77/259 (29%), Positives = 139/259 (53%), Gaps = 16/259 (6%) Query: 55 EEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114 +E ++ I + + FI R I +++ + ++ + SF ++L + ++ Sbjct: 5 QEHMSDSLIENATEADCIDFILHRSESGIMAKTIAKDIAALNSFFRFLIIEGVRKDNPSE 64 Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174 ++ K+ +LPR L+ + +L + L + + + R+ A+ L+Y GLR+SE + Sbjct: 65 SIERPKREKTLPRVLSPDEVDSLFAAIPLDSPN-----NIRDRALFELIYSAGLRVSEIV 119 Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-------NLNIQL 227 +L ++I D+ +++ GKG+K RIVP + + + +Y +L N I Sbjct: 120 NLKMEDIFYDEDLIKVTGKGNKERIVPFGSAAKYWLKQYILEARTELLKPKHPENTLISG 179 Query: 228 PLFRGIRGKPLN-PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286 +F RG L G+++R I +L + G+ T HTLRHS+ATHLL+ G DLRS+Q + Sbjct: 180 SVFLNNRGAVLTRKGIWKR-INELSNFSGI--ETKVHTLRHSYATHLLAGGADLRSVQCL 236 Query: 287 LGHFRLSTTQIYTNVNSKN 305 LGH +STTQ+YT++ K+ Sbjct: 237 LGHSDISTTQVYTHIEDKS 255 >gi|199599532|ref|ZP_03212920.1| Integrase [Lactobacillus rhamnosus HN001] gi|199589573|gb|EDY97691.1| Integrase [Lactobacillus rhamnosus HN001] gi|259649723|dbj|BAI41885.1| integrase [Lactobacillus rhamnosus GG] Length = 298 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 90/307 (29%), Positives = 150/307 (48%), Gaps = 20/307 (6%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 +K + + L +ER S T+ +Y D ++F FL + ++ +++ + Sbjct: 1 MKPLAAFQEYLTVERQYSPETVTAYLNDIQEFQAFL----KANGGFTDFSKVDDLDVQTY 56 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQ 133 ++ Q + S+ R +S ++SF +YL + + + N + LKK + LP+ E + Sbjct: 57 LTDLNKQALARTSIARKISSLRSFYRYLVRIDVV-KRNPFELVELKKQHHHLPQFFYEAE 115 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L V T +D RN A+L +LYG G+R+SE +LT + + L I GK Sbjct: 116 IQELFKTVEGKTP-----LDQRNRALLEVLYGTGIRVSECANLTLNQVDFNTGLLLIHGK 170 Query: 194 GDKIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 G+K R VP ++A+ Y + D+ +F G+P+ + + Sbjct: 171 GNKDRYVPFGRYAQRALQTYLKDGRQTLMNKRDVQHRF---VFVNQYGRPITARGIEYIL 227 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 QL + L + H LRHSFATH+L +G DLR++Q +LGH LSTTQIYT+V + Sbjct: 228 DQLIKQTSLIANIHPHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLK 287 Query: 308 DWMMEIY 314 + M+ Y Sbjct: 288 NEYMKYY 294 >gi|161505543|ref|YP_001572655.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866890|gb|ABX23513.1| hypothetical protein SARI_03708 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 300 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 91/311 (29%), Positives = 152/311 (48%), Gaps = 17/311 (5%) Query: 9 IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68 + L ++ +L+ L +ER LS +TL +Y+ RQ +A E +++ +Q Sbjct: 1 MTDVALSQDVSRFLRYLGVERQLSPITLLNYQ---RQLDAIIALAGEA--GLKSWQQCDA 55 Query: 69 TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 +R F + R + +G SL LS ++SF +L + + + K LP+ Sbjct: 56 VMVRGFAVRSRRKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKN 115 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 ++ L+D L + R+ A+L ++YG GLR+SE + L +++ D + Sbjct: 116 IDVDDVNRLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEV 169 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 + GKG K R +P+ + I + DL L + + LF GK ++ Q+ Sbjct: 170 WVMGKGSKERRLPIGRNAVTWIEHWLDLR--GLFASDEEALFLSKLGKRISARNVQKRFA 227 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 + GL H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ Sbjct: 228 EWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH--- 284 Query: 309 WMMEIYDQTHP 319 + +YD HP Sbjct: 285 -LASVYDAAHP 294 >gi|120602210|ref|YP_966610.1| phage integrase family protein [Desulfovibrio vulgaris DP4] gi|120562439|gb|ABM28183.1| phage integrase family protein [Desulfovibrio vulgaris DP4] Length = 472 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 77/184 (41%), Positives = 103/184 (55%), Gaps = 6/184 (3%) Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 T V+++ T H + I R+ A+ LLYG GLRISEAL L + +R+ GKG Sbjct: 241 TAVESMSGDTLH-AEAIRRRDLALAELLYGSGLRISEALGLDVLDADPSAGVVRVLGKGS 299 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 K R+ PL + A+ E+ L + LF G RG L+ R I L R G Sbjct: 300 KERMSPLSDTSADALREWLHFR-HHLASEGERALFVGARGGRLDRRQATRIIDALCRRAG 358 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 LP S + H LRHSFATHLL G DLRS+Q +LGH RL+TTQ YT++ + ++E+YD Sbjct: 359 LPQSVSPHGLRHSFATHLLEAGADLRSVQELLGHARLATTQRYTHLTLAH----LIEVYD 414 Query: 316 QTHP 319 + HP Sbjct: 415 KAHP 418 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L ++E+E+G S T+ +Y D QF L T E + ++ ++ ++++ Sbjct: 49 FLAHVELEKGYSPATVTAYGTDLMQFHGVL---TAEGFGLDAPENVTRRHVQRYLAELHR 105 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + S+ R LS +++F +Y+ + + T + + N ++ PR LN Q L+D Sbjct: 106 LRTARSSVARKLSALRAFFRYMLRLRRVTADPVAAVHNPRQEKRQPRTLNVDQVFALLDT 165 >gi|149927220|ref|ZP_01915477.1| Tyrosine recombinase XerD [Limnobacter sp. MED105] gi|149824159|gb|EDM83380.1| Tyrosine recombinase XerD [Limnobacter sp. MED105] Length = 299 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 89/296 (30%), Positives = 150/296 (50%), Gaps = 17/296 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E GL+K TLQ+Y D +Q L + +E + + Q S IR + ++ Sbjct: 15 LWLEEGLAKATLQAYRGDLQQ----LGNWLDEHFA-ENLLQASNEHIRNHVHD--LLELK 67 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 SL R LS K F +L + ++ +++ K+ +P+ L+EKQ L L+ L Sbjct: 68 PSSLNRKLSSYKRFYLWLNTTRQREDNPCSQLQSAKRGLRIPKTLSEKQVLDLLSAPDLS 127 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + R+ A+L +Y GLR+SE +++ + + + +++ GKG K R+VP+ Sbjct: 128 NA-----AGQRDKAMLEFMYASGLRVSELVNMPLRAVDLNVGAVKVLGKGKKERLVPMGE 182 Query: 205 SVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 R AI Y +L LF G P+ F + ++L G+ + + H Sbjct: 183 PARLAIQLYLQQARGELLKGKTSDFLFVTHFGTPMTRQGFWKNTKRLALIAGINTTVSPH 242 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LRH+FATHL+++G DLR +Q +LGH + TTQIYT+V ++ + + +Q+HP Sbjct: 243 VLRHAFATHLINHGADLRVVQLLLGHADIGTTQIYTHVAKEH----LHTLLNQSHP 294 >gi|283834576|ref|ZP_06354317.1| tyrosine recombinase XerC [Citrobacter youngae ATCC 29220] gi|291069704|gb|EFE07813.1| tyrosine recombinase XerC [Citrobacter youngae ATCC 29220] Length = 300 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 91/298 (30%), Positives = 147/298 (49%), Gaps = 17/298 (5%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L+ L +ER LS +TL +Y+ RQ +A E +Q+ +Q +R+F + R + Sbjct: 14 LRYLGVERQLSPITLLNYQ---RQLDAIIALAGE--TGLQSWQQCDAAMVRSFAVRSRRK 68 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 +G SL LS ++SF +L + + ++ K LP+ ++ L+D Sbjct: 69 GLGPASLALRLSALRSFFDWLVNQGELKANPAKSVSAPKAPRHLPKNIDVDDVNRLLDID 128 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 L + R+ A+L ++YG GLR+SE + L +++ D + + GKG K R +P Sbjct: 129 L------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLP 182 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 + + I + DL L LF GK ++ Q+ + GL Sbjct: 183 IGRNAVAWIEHWLDLR--GLFGGDDDALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVH 240 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ + +YD HP Sbjct: 241 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHP 294 >gi|184200720|ref|YP_001854927.1| tyrosine recombinase XerC [Kocuria rhizophila DC2201] gi|183580950|dbj|BAG29421.1| tyrosine recombinase XerC [Kocuria rhizophila DC2201] Length = 378 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 84/301 (27%), Positives = 139/301 (46%), Gaps = 14/301 (4%) Query: 24 NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83 +L +ER S+ T++SY D ++ + I L +R ++++R + + Sbjct: 85 HLSLERSRSENTVRSYTSDVADLSRWMLEHG-----IDGADLLDRDALRGWLAQRHQRGL 139 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD---N 140 S+ R ++ + +F ++ + +R + + LP + ++D + Sbjct: 140 ARSSVSRGIAAVHTFFRWAVDTQGLRHDPAAGLRGPRPARHLPDVVGATALAEMLDALGD 199 Query: 141 VLL--HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 V L H + AR+ A+L LLY G RISE + L ++ Q L I GKGDK R Sbjct: 200 VALGPHEEESDAALAARDWALLELLYATGARISELVGLDRAHVDRAQHVLTITGKGDKQR 259 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VP A+ + P +F G RG ++P V +R + + Sbjct: 260 RVPYGERAGDALAVWEHRRPALATERAGDAVFVGARGGRIDPRVARRVVADALNDVPDTS 319 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + H+LRHS ATHLL G DLR++Q +LGH ++TTQIYT+V+ + + Y Q H Sbjct: 320 ARGPHSLRHSAATHLLDGGADLRTVQELLGHATVATTQIYTHVSVER----IKRAYSQAH 375 Query: 319 P 319 P Sbjct: 376 P 376 >gi|145300550|ref|YP_001143391.1| tyrosine recombinase XerC [Aeromonas salmonicida subsp. salmonicida A449] gi|142853322|gb|ABO91643.1| tyrosine recombinase XerC [Aeromonas salmonicida subsp. salmonicida A449] Length = 322 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 86/314 (27%), Positives = 155/314 (49%), Gaps = 19/314 (6%) Query: 8 EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67 E + L E +++ L +ER LS T +YE + L ++ + +L Sbjct: 14 EPLPASLADELAAFIEYLRVERQLSPHTRSNYESHLQAMAAELV-----RLGVSDWARLE 68 Query: 68 YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127 +++R+ +++ + RSL +S ++SF + ++ T + + K+ LP+ Sbjct: 69 ASQVRSLVTRMHKAGLAPRSLSTKISALRSFCDWQVRQGRLTANPARGIVTPKQGRPLPK 128 Query: 128 ALNEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 L+ VD + LL+ + E + R+ AI+ L+Y GLR++E + L +I D Sbjct: 129 NLD-------VDEMYQLLNITDEQDPLAVRDRAIMELMYSSGLRLAELVGLNLGDIKLDD 181 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245 L++ GKG + R++P+ + + ++ + P L + LF R + L+ Q Sbjct: 182 RQLKVTGKGSRERVLPMGRMAVEWLHKWLKVRPL-LAGDEADALFVSKRKQRLSARSVQE 240 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + L H LRHSFATH+L + GDLR++Q +LGH LSTTQIYT+++ ++ Sbjct: 241 RLDGWGNKQALNAHVHPHKLRHSFATHMLESSGDLRAVQELLGHADLSTTQIYTHLDFQH 300 Query: 306 GGDWMMEIYDQTHP 319 + ++YD HP Sbjct: 301 ----LAKVYDNAHP 310 >gi|310287153|ref|YP_003938411.1| Integrase/recombinase XerC [Bifidobacterium bifidum S17] gi|309251089|gb|ADO52837.1| Integrase/recombinase XerC [Bifidobacterium bifidum S17] Length = 334 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 93/334 (27%), Positives = 154/334 (46%), Gaps = 46/334 (13%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L RGLS T+++Y D R+ L LA I +RQ++ ++R +++ T Sbjct: 10 FLAYLRANRGLSDNTVKAYGTDVRECLHALA-----SRGIADLRQVTTDDLRGWMAFE-T 63 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + S+ R + ++SF + + + K ++LP L E QA L+D Sbjct: 64 RDHARSSMARKVVSVRSFFAWAHEHGRIEADPAAVLMTPKLPDTLPSVLTEAQAERLMDR 123 Query: 141 V----LLHTSHETKW-------------------------IDARNSAILYLLYGCGLRIS 171 V LH + ++ + R++A+L LLY G+R++ Sbjct: 124 VDDDASLHAASSQRYETRHDEMPRLDSAHRGEGMSQRDEVVALRDAAMLELLYATGIRVA 183 Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQ---- 226 E + L ++ T+R+ GKG K R+VP KA+ + + P L Sbjct: 184 ELVGLDIGDVDWSHRTIRVTGKGSKQRVVPFGDPAEKALAGWKEHGRPLILRRAGAGTLD 243 Query: 227 -LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285 LF G+RG+ ++ + + + + R G+P + H+LRHS ATH+L G DLR +Q Sbjct: 244 TAALFLGMRGRRIDQRIVRDVVHRAARESGVP-DISPHSLRHSAATHMLDGGADLREVQE 302 Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 +LGH L TTQ YT+V+ + + E Y Q P Sbjct: 303 MLGHSSLRTTQRYTHVSIEQ----LKERYRQAFP 332 >gi|156932654|ref|YP_001436570.1| site-specific tyrosine recombinase XerD [Cronobacter sakazakii ATCC BAA-894] gi|156530908|gb|ABU75734.1| hypothetical protein ESA_00437 [Cronobacter sakazakii ATCC BAA-894] Length = 319 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 93/314 (29%), Positives = 158/314 (50%), Gaps = 17/314 (5%) Query: 8 EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67 E+ + L + +L L +ER L++ +L +Y D + +L T+Q+ Sbjct: 19 EVAVEQDLARIEQFLDALWLERNLAENSLSAYRRDLSMVVEWLHHRGLSLATVQS----- 73 Query: 68 YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127 +++ +++R S R LS ++ ++L + KI + + + K LP+ Sbjct: 74 -GDLQTLLAERVEGGYKATSTARMLSAVRRLFQHLYREKIRDDDPSALLASPKLPQRLPK 132 Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 L+E Q V+ +L + E I+ R+ A+L +LY GLR+SE + LT ++ Q Sbjct: 133 DLSEAQ----VERLLQAPTVEEP-IELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGV 187 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 +R+ GKG+K R+VPL + +Y P+ LN LF R + + F Sbjct: 188 VRVIGKGNKERLVPLGEEAVYWLEQYLTHGRPWLLNGQSLDILFPSNRARQMTRQTFWHR 247 Query: 247 IRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 I+ + G+ + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ Sbjct: 248 IKHYAQLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 307 Query: 306 GGDWMMEIYDQTHP 319 + +++ Q HP Sbjct: 308 ----LRQLHQQHHP 317 >gi|311064016|ref|YP_003970741.1| integrase/recombinase [Bifidobacterium bifidum PRL2010] gi|310866335|gb|ADP35704.1| Integrase/recombinase [Bifidobacterium bifidum PRL2010] Length = 334 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 93/334 (27%), Positives = 154/334 (46%), Gaps = 46/334 (13%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L RGLS T+++Y D R+ L LA I +RQ++ ++R +++ T Sbjct: 10 FLAYLRANRGLSDNTVKAYGTDVRECLHALA-----SRGIADLRQVTTDDLRGWMAFE-T 63 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + S+ R + ++SF + + + K ++LP L E QA L+D Sbjct: 64 RDHARSSMARKVVSVRSFFAWAHEHGRIEADPAAVLMTPKLPDTLPSVLTEAQAERLMDR 123 Query: 141 V----LLHTSHETKW-------------------------IDARNSAILYLLYGCGLRIS 171 V LH + ++ + R++A+L LLY G+R++ Sbjct: 124 VDDDASLHAASSQRYETRHDEMPRLDSAHRGEGMSQRDEVVALRDAAMLELLYATGIRVA 183 Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQ---- 226 E + L ++ T+R+ GKG K R+VP KA+ + + P L Sbjct: 184 ELVGLDIGDVDWSHRTIRVTGKGSKQRVVPFGDPAEKALAGWKEHGRPLILRRAGAGTLD 243 Query: 227 -LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285 LF G+RG+ ++ + + + + R G+P + H+LRHS ATH+L G DLR +Q Sbjct: 244 TAALFLGMRGRRIDQRIVRDVVHRAARESGVP-DISPHSLRHSAATHMLDGGADLREVQE 302 Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 +LGH L TTQ YT+V+ + + E Y Q P Sbjct: 303 MLGHSSLRTTQRYTHVSIEQ----LKERYRQAFP 332 >gi|269103726|ref|ZP_06156423.1| tyrosine recombinase XerC [Photobacterium damselae subsp. damselae CIP 102761] gi|268163624|gb|EEZ42120.1| tyrosine recombinase XerC [Photobacterium damselae subsp. damselae CIP 102761] Length = 306 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 92/311 (29%), Positives = 158/311 (50%), Gaps = 16/311 (5%) Query: 9 IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68 ++ L + + + + L ER LS T Q+Y+ RQ E ++T + +QL Sbjct: 5 VIPTSLSRPLERFYEYLRSERELSLHTQQNYK---RQLSTIAEQLVEMQVT--SWQQLDA 59 Query: 69 TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 +R SK + SL LS ++SFL +L + + + KK+ LP+ Sbjct: 60 GWVRQIASKGMRSGLKASSLGMRLSALRSFLDFLVFQGDLKANPAKGVSAPKKARPLPKN 119 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 L+ + +D +L + + R+ A++ L+YG GLR+SE + L ++I + L Sbjct: 120 LDVDE----MDQLLSVEGDDP--LSIRDRAMMELMYGAGLRLSELVGLNLKDIQLTKGDL 173 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 R+ GKGDK RIVP ++ + + + L + + LF RG ++ Q+ + Sbjct: 174 RVIGKGDKERIVPFSGLAKEWVGNWLKVRA-TLAHSDEPALFVSKRGMRISNRNVQKRME 232 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 + + + H LRHSFATH+L + GDLR++Q +LGH LSTTQIYT+++ ++ Sbjct: 233 EWGQKQAVSSHINPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQH--- 289 Query: 309 WMMEIYDQTHP 319 + ++YD+ HP Sbjct: 290 -LAKVYDEAHP 299 >gi|323141913|ref|ZP_08076774.1| tyrosine recombinase XerD [Phascolarctobacterium sp. YIT 12067] gi|322413660|gb|EFY04518.1| tyrosine recombinase XerD [Phascolarctobacterium sp. YIT 12067] Length = 297 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 88/301 (29%), Positives = 151/301 (50%), Gaps = 19/301 (6%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 + L +E GL+K T +Y D R + L +E++ Q+S ++ A++ + + + Sbjct: 10 EYLTVELGLAKNTQLAYMRDLRLLMKSLQLKADEELL-----QVSRQQLIAYLVRLKQEG 64 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 ++ R L+ IK+F ++L + + + + LP+ L+ ++ L+D Sbjct: 65 RAASTVARKLASIKAFYRFLTAERYIRRNPAEVLEAASRGLHLPKVLSVQEVERLLDEPN 124 Query: 143 LHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 L T +D R+ +L LLY G+R+SE +++ +N+ + + GKG K R++P Sbjct: 125 LGT------LDGYRDKTMLELLYATGMRVSELVNVPVKNVDMKMQYVIVMGKGSKERMLP 178 Query: 202 LLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 L + + Y + L + LF G P+ F I + G+ Sbjct: 179 LGRTALHYLEHYLSVVRPQLLHGKPDTAAELFVTGWGGPMTRERFYEIIVAYGKSAGISK 238 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 T H LRHSFATHLL+NG DLR +Q +LGH +STTQIYT+++ + + E+YD+TH Sbjct: 239 RVTPHMLRHSFATHLLNNGTDLRIVQELLGHADISTTQIYTHLDVER----LREVYDKTH 294 Query: 319 P 319 P Sbjct: 295 P 295 >gi|282856243|ref|ZP_06265526.1| tyrosine recombinase XerC [Pyramidobacter piscolens W5455] gi|282586002|gb|EFB91287.1| tyrosine recombinase XerC [Pyramidobacter piscolens W5455] Length = 290 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 90/308 (29%), Positives = 148/308 (48%), Gaps = 26/308 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L+ L + S+ T+ +Y D QF F+ + I T IRAF+ Sbjct: 7 SFLEYLRNNKASSENTVTNYAVDLAQFADFVENQETGPLEITT------PLIRAFLRSLA 60 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + S+ R LS +K+F YL ++ + ++R+ + LPRAL+ D Sbjct: 61 GFGYANSSIARKLSAVKAFELYLLEKGLIAADPAASIRSPRLPERLPRALSR-------D 113 Query: 140 NV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 + L+ + + K RN IL ++YGCG+R++E +SL ++ D+ L+++GKGDK Sbjct: 114 GIERLIQEAWKIKPC-LRNGTILEVMYGCGVRVAELVSLRWDDVDVDERWLKVRGKGDKE 172 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 R+VP ++A+ + C + LF G G + R + Q R GL Sbjct: 173 RLVPFGRYAKEALTRWKAECLPEPGF-----LFPGKGGAAITVRTVHRLVVQAARNAGLE 227 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + T H++RHSFATH+L G L +Q +LGH L TTQ Y V + + + Y Sbjct: 228 -NVTPHSVRHSFATHMLEGGASLNVLQELLGHESLLTTQRYLKVTPGH----LRDSYMAA 282 Query: 318 HPSITQKD 325 HP +++ Sbjct: 283 HPRSGEEE 290 >gi|58040221|ref|YP_192185.1| integrase/recombinase XerD [Gluconobacter oxydans 621H] gi|58002635|gb|AAW61529.1| Integrase/recombinase XerD [Gluconobacter oxydans 621H] Length = 311 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 93/288 (32%), Positives = 145/288 (50%), Gaps = 16/288 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ L ERG + T Q+Y D F A +++ R E+R+++++ Sbjct: 15 EAFLEMLAAERGAALKTRQAYASDLADFATHCA-----PLSLSEARG---EEVRSYLAEL 66 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + R+ R LS ++ F ++L + + + + ++SLPR L+E + L+ Sbjct: 67 SRAGLAARTAARRLSCLRQFYRFLMLESVREDDPTERQQAPRITSSLPRPLDEDEIRLLL 126 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + HE + D + A L LLY GLRISE L+L + L ++GKG + R Sbjct: 127 ETGT--RGHENERRDIVSRAALELLYTTGLRISELLALPATCVHVRGPMLLVRGKGGRER 184 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGL- 256 +VPL S R A + L FD +L LF G K L F + + GL Sbjct: 185 LVPLSQSARDAADQ---LVHFDRDLGSPW-LFPGRDPQKHLTRQGFDKILLACALKAGLD 240 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 P + H LRHSFA+HLL++G DLR++Q +LGH ++TTQIYT V S+ Sbjct: 241 PDRVSPHVLRHSFASHLLAHGADLRALQMLLGHADIATTQIYTQVMSE 288 >gi|117619677|ref|YP_855009.1| tyrosine recombinase XerC [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561084|gb|ABK38032.1| tyrosine recombinase XerC [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 325 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 83/305 (27%), Positives = 151/305 (49%), Gaps = 19/305 (6%) Query: 17 ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 E +++ L +ER LS T +Y+ L K+ + +L +++R+ ++ Sbjct: 26 ELAGFIEYLRVERQLSPHTRSNYQAHLEAMTAELV-----KLGVDDWARLEASQVRSLVT 80 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + + RSL +S ++SF + ++ + + K+ LP+ L+ Sbjct: 81 RMHKAGLAPRSLATKVSALRSFCDWQVRQGRLVANPARGIVTPKQGRPLPKNLD------ 134 Query: 137 LVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 VD + LL+ + E + R+ AI+ L+Y GLR++E + L ++ D+ LR+ GKG Sbjct: 135 -VDEMYQLLNITDEQDPLAVRDRAIMELMYSSGLRLAELVGLNLADVKLDERQLRVTGKG 193 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 + R++P+ + + ++ L P ++ LF R + L+ Q + Sbjct: 194 SRERVLPVGRMAVEWLHKWLKLRPLLAGDELE-ALFVSKRKQRLSARSVQERLDGWGNKQ 252 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 L H LRHSFATH+L + GDLR++Q +LGH LSTTQIYT+++ ++ + ++Y Sbjct: 253 ALNAHVHPHKLRHSFATHMLESSGDLRAVQELLGHADLSTTQIYTHLDFQH----LAKVY 308 Query: 315 DQTHP 319 D HP Sbjct: 309 DSAHP 313 >gi|311068135|ref|YP_003973058.1| site-specific tyrosine recombinase XerC [Bacillus atrophaeus 1942] gi|310868652|gb|ADP32127.1| site-specific tyrosine recombinase XerC [Bacillus atrophaeus 1942] Length = 304 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 94/306 (30%), Positives = 150/306 (49%), Gaps = 25/306 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +++ L+IE+ S+ T+ +Y +F FL I + +Y + R F+++ Sbjct: 11 FVEYLQIEKNYSQYTIVNYVDSIEEFETFLRVQR-----INGFEEAAYHDTRIFLTEAYE 65 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ--ALTLV 138 + + R++ + +S ++SF K+L + K+ E+ + K+ +P+ L +K+ L V Sbjct: 66 KGLSRRTISKKISALRSFYKFLMREKLVEENPFQLVHLPKQEKRIPKFLYQKELEELFAV 125 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + L T R+ A+L LLY G+R+SE SLT + T+ + GKG K R Sbjct: 126 SDTSLPTGQ-------RDQALLELLYATGMRVSECSSLTVNGVDLFMDTVLVHGKGKKQR 178 Query: 199 IVPLLPSVRKAILEYYDLCP---FDLNLNIQLPLFRGIRGKPLNP-GVFQRYI-RQLRRY 253 +P +A+ Y + + LF RG PL GV RYI L + Sbjct: 179 YIPFGSYAHEALELYVNSGRQRLLEKAKESHDVLFVNQRGGPLTVRGV--RYILSGLVKK 236 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 L H LRH+FATHLL+ G DLRS+Q +LGH LS+TQIYT+V+ + + Sbjct: 237 ASGTLHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSK----EMLRNT 292 Query: 314 YDQTHP 319 Y HP Sbjct: 293 YMSHHP 298 >gi|226951750|ref|ZP_03822214.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244] gi|226837540|gb|EEH69923.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244] Length = 306 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 80/234 (34%), Positives = 127/234 (54%), Gaps = 9/234 (3%) Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 RS+ R LS ++ F K+L+++K+ ++ + + + K +LP+ L+E+ L++ + T Sbjct: 80 RSIARCLSALRQFYKFLREQKLREDNPVASHHSPKIGRALPKDLSEQDVEALINAPDIST 139 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 + + R+ A+ +LY CGLR+SE L+L + I Q +RI GKG+K R+VPL Sbjct: 140 T-----LGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGFVRITGKGNKERLVPLGQY 194 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 I +Y L + LF G ++ F I++ + + HTL Sbjct: 195 ACDWIEKYLAESRPQLYKSNTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAELSPHTL 254 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 RH+FATHLL++G DLR +Q +LGH LSTTQIYT+V M ++ Q HP Sbjct: 255 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQHR----MQALHHQYHP 304 >gi|56414990|ref|YP_152065.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363919|ref|YP_002143556.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56129247|gb|AAV78753.1| site-specific integrase/recombinase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095396|emb|CAR60955.1| site-specific integrase/recombinase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 298 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 92/304 (30%), Positives = 154/304 (50%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ER L++ TL +Y D + +L + T Q +++ +++R Sbjct: 9 EQFLDALWLERDLAENTLSAYRRDLSMVVAWLHHRGKTLATAQA------DDLQTLLAER 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ F ++L + K + + + K LP+ L+E Q L+ Sbjct: 63 VEGGYKATSSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEVQVERLL 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L+ ++ R+ A+L +LY GLR+SE + LT +I Q +R+ GKG+K R Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VPL + Y + P+ LN ++I + LF R + + F I+ G+ Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292 Query: 316 QTHP 319 Q HP Sbjct: 293 QHHP 296 >gi|238763216|ref|ZP_04624181.1| Tyrosine recombinase xerD [Yersinia kristensenii ATCC 33638] gi|238698489|gb|EEP91241.1| Tyrosine recombinase xerD [Yersinia kristensenii ATCC 33638] Length = 299 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 90/303 (29%), Positives = 153/303 (50%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ER L++ TL SY D +L + + + + ++++F+++R Sbjct: 10 EQFLDALWLERNLAENTLASYRLDLHALSGWLEHHDSDLLRAGS------QDLQSFLAER 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K+ + + + K LP+ L+E Q Sbjct: 64 IEGGYKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQV---- 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + LL++ + ++ R+ A+L +LY GLR+SE + LT ++ Q +R+ GKG+K R Sbjct: 120 -DALLNSPNVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKER 178 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL I Y + P+ +N LF R + + F I+ G+ Sbjct: 179 LVPLGEEAVYWIENYMEHGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGID 238 Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + ++ Q Sbjct: 239 SERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKLLHQQ 294 Query: 317 THP 319 HP Sbjct: 295 HHP 297 >gi|312883960|ref|ZP_07743677.1| site-specific tyrosine recombinase XerD [Vibrio caribbenthicus ATCC BAA-2122] gi|309368418|gb|EFP95953.1| site-specific tyrosine recombinase XerD [Vibrio caribbenthicus ATCC BAA-2122] Length = 302 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 90/303 (29%), Positives = 153/303 (50%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + +ERGLS+ TL SY D + L ++ F ++ +S + ++ F S Sbjct: 13 EQFLDAMWMERGLSENTLSSYRNDLFKLLKWM-FENNYRLNF-----ISISGLQDFQSWL 66 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S R LS ++ +Y+ + ++ ++ + + K LP+ L+E+Q Sbjct: 67 VDEGYKQTSRARMLSALRRLFQYMHRERLRSDDPSALLVSPKLPKRLPKDLSEQQV---- 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + LL I+ R+ A+L LLY GLR++E +SLT +N+ Q +R+ GKG K R Sbjct: 123 -DALLSAPDANNPIELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVTGKGGKER 181 Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ + I + +L +F R K + F I+ G+ Sbjct: 182 LVPMGEDAIEWIETFLHQGRSELLGEKTSDVVFPSKRAKQMTRQTFWHRIKYYAMLAGID 241 Query: 258 LST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ + Sbjct: 242 SELLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHSE 297 Query: 317 THP 319 HP Sbjct: 298 HHP 300 >gi|251793385|ref|YP_003008113.1| site-specific tyrosine recombinase XerC [Aggregatibacter aphrophilus NJ8700] gi|247534780|gb|ACS98026.1| tyrosine recombinase XerC [Aggregatibacter aphrophilus NJ8700] Length = 295 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 104/318 (32%), Positives = 160/318 (50%), Gaps = 37/318 (11%) Query: 19 QNWLQN----LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 QN LQ L+IER +S TL +Y+ RQ + + + IQ +Q++ + +R Sbjct: 2 QNALQKYWTYLKIERQVSPHTLSNYQ---RQLVRIVEIL--QHAGIQQWQQVTPSVVRFV 56 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 I++ + ++SL LS ++ FL YL + + + K++ LP+ ++ +Q Sbjct: 57 IAQSHKDGLHEKSLALRLSALRRFLSYLVQLGELKVNPATGISAPKQAKHLPKNIDTEQ- 115 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 V +L + S E ID R+ AI+ LLY GLR+SE L +I +R+ GKG Sbjct: 116 ---VQQLLANDSKEP--IDIRDRAIIELLYSSGLRLSELQGLNLNSINIRVREVRVIGKG 170 Query: 195 DKIRIVPLLPSVRKAILEYYDL----CPFDLNLNI-QLP---LFRGIRGKPLNPGVFQRY 246 +K R+VPL AI ++ + P D L + QL R I+ + G+ QR Sbjct: 171 NKERVVPLGRYASHAIQQWLKVRLLFNPKDEALFVSQLGNRMSHRAIQMRLETWGIRQRL 230 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 L H LRHSFATH+L DLR++Q +LGH LSTTQIYT++N ++ Sbjct: 231 NSHL----------NPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH- 279 Query: 307 GDWMMEIYDQTHPSITQK 324 + E+YD HP +K Sbjct: 280 ---LAEVYDSAHPRAKRK 294 >gi|242280626|ref|YP_002992755.1| integrase family protein [Desulfovibrio salexigens DSM 2638] gi|242123520|gb|ACS81216.1| integrase family protein [Desulfovibrio salexigens DSM 2638] Length = 307 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 92/311 (29%), Positives = 155/311 (49%), Gaps = 26/311 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +L + IER LS+LT+++Y+ D QF F+ T+ +I I + + FIS Sbjct: 8 HTFLNHCIIERNLSELTMKAYQKDLLQFKHFIPDSTD---SIHDINKFILRDYIKFIS-- 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTL 137 + RS+KR ++ +KSF ++++ I S + + +S LP+ +++ Sbjct: 63 --NQYKPRSIKRKIATLKSFFNFMERDDIIETSPFRKIHLKIDRSKILPKTISKSS---- 116 Query: 138 VDNVLLHTSHETKWID---------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 ++N+L +T E R+ AI+ L+ G+R+SE +T ++ + Sbjct: 117 INNLLKYTYTERAKYQLSGRGYREATRDIAIIETLFMTGIRVSELCQITTSSMDLINEQI 176 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 +I GKG K R++P+ + IL Y+ D +L P F +P++ +R IR Sbjct: 177 KITGKGKKERVIPICANNALLILREYETLYRD-HLLPDSPFFLNRDKRPISDQSVRRIIR 235 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 + G+P T H RH+ AT LL NG D+R+IQ++LGH LS T+IYT+V+ + Sbjct: 236 KYCSMCGIPEHVTPHMFRHTIATMLLENGVDIRNIQTLLGHSSLSVTEIYTHVSLSSQR- 294 Query: 309 WMMEIYDQTHP 319 EI HP Sbjct: 295 ---EILSMKHP 302 >gi|15838026|ref|NP_298714.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa 9a5c] gi|34223080|sp|Q9PDF4|XERD_XYLFA RecName: Full=Tyrosine recombinase xerD gi|9106440|gb|AAF84234.1|AE003973_2 integrase/recombinase [Xylella fastidiosa 9a5c] Length = 324 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 98/309 (31%), Positives = 154/309 (49%), Gaps = 24/309 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L L I+ GLS+ TL SY D L LA + + + L+ + +++ R Sbjct: 29 HFLDALWIKHGLSQHTLNSYRRD----LEGLARWNNGRAG--PLATLTPPALLDYLTWRT 82 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q S R LS +++F Y + ++ + + + LP+AL E Q ++ Sbjct: 83 QQHYSPLSNARLLSVLRTFFSYAVECGWRNDNPSTLLAHPVLPHPLPKALTESQ----IE 138 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 +L S ET RN A+L L+Y GLR+SE ++L + Q LRI GKG K R+ Sbjct: 139 ALLAAPSIETP-EGLRNRAMLELMYAAGLRVSELVTLPVAMLNRRQGVLRIIGKGGKERL 197 Query: 200 VPLLPSVRKAILEYYDLC--------PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 VPL + + Y + P + + +PLF K L+ F R+I+ Sbjct: 198 VPLGEESQHWLQRYLEQARPSLAADKPIPADSDGDVPLFINTTLKRLSRQQFWRWIKHYA 257 Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ P + H LRHSFATHLL++G DLR++Q +LGH +STTQIYT + ++ + Sbjct: 258 ALAGIAPNKVSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYTFIARQH----L 313 Query: 311 MEIYDQTHP 319 +++ Q HP Sbjct: 314 QQLHAQHHP 322 >gi|322515579|ref|ZP_08068560.1| tyrosine recombinase XerC [Actinobacillus ureae ATCC 25976] gi|322118382|gb|EFX90648.1| tyrosine recombinase XerC [Actinobacillus ureae ATCC 25976] Length = 331 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 85/307 (27%), Positives = 160/307 (52%), Gaps = 25/307 (8%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L IE+ S TL +Y+ RQ L +++ I ++++ +R +++ Q + Sbjct: 45 LRIEKQASPHTLSNYQ---RQLLAVSEMFSQAGIG--AWQEVNVAAVRWMLTQSHKQGLS 99 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 +S+ L ++ + YL +++ T + L +++ K LP+ ++ +Q L++ Sbjct: 100 AKSIGLRLVALRQWFNYLVQQEQMTVNPALGIKSPKVGKHLPKNIDAEQIGQLLN----- 154 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + ++ ++ R+ A++ L+Y GLR+SE L ++ + +++ GKG+K RI+P+ Sbjct: 155 -TETSEPLELRDLAMMELMYSSGLRLSELQGLDLGDMDLNAREVKVLGKGNKERILPIGT 213 Query: 205 SVRKAILEY----YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 +A+ + +D P D LF RG L+ Q +++ + GL Sbjct: 214 KALQALQAWLGGRHDFNPQDN------ALFLNKRGGRLSHRSIQLAMQKWGKKQGLETHL 267 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 H LRHSFATH+L GDLR++Q +LGH LSTTQIYT+++ ++ + +IYD HP Sbjct: 268 HPHKLRHSFATHMLEASGDLRAVQELLGHSSLSTTQIYTSLDFQH----LAQIYDAAHPR 323 Query: 321 ITQKDKK 327 +K ++ Sbjct: 324 ARRKKEE 330 >gi|62184944|ref|YP_219729.1| site-specific tyrosine recombinase XerC [Chlamydophila abortus S26/3] gi|81312884|sp|Q5L6G3|XERC_CHLAB RecName: Full=Tyrosine recombinase xerC gi|62148011|emb|CAH63762.1| putative integrase/recombinase [Chlamydophila abortus S26/3] Length = 312 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 95/314 (30%), Positives = 155/314 (49%), Gaps = 27/314 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE----EKITIQTIRQ---------L 66 ++L+N+ + S TL++Y D F FL + E I + T + L Sbjct: 10 DYLKNI---KTASPHTLRNYCIDLNSFKTFLEKHGELTPSPPICLLTKERQEAELPFSLL 66 Query: 67 SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126 + +R +I K + R++KR LS IKSF +Y K++I + ++ + LP Sbjct: 67 TKDTVRLYILKLMQENKAKRTIKRRLSAIKSFSQYCVKQRILPDDPTETIQGPRLPKELP 126 Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 + +Q +L+ T +K+ R+ +L L Y GLRISE +++ +I Sbjct: 127 SPITYEQV-----EILMATPDLSKYTGLRDRCLLELFYSSGLRISEIVAINHWDIDFTSH 181 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQR 245 +RI+GKG K R+VP+ P + L++Y P ++ +F GK L R Sbjct: 182 LIRIRGKGKKERLVPITPHAAQW-LQHYLTHPARTSIEKDAQAIFLNRFGKRLTTRSIDR 240 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 ++ R GL T HT+RH+ ATH L NG DL++IQ++LGH L TT IYT+V+ K Sbjct: 241 KFQKYLRQSGLSGHITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTHVSMK- 299 Query: 306 GGDWMMEIYDQTHP 319 + ++++HP Sbjct: 300 ---LKKQTHNESHP 310 >gi|317504379|ref|ZP_07962363.1| integrase/recombinase XerD [Prevotella salivae DSM 15606] gi|315664501|gb|EFV04184.1| integrase/recombinase XerD [Prevotella salivae DSM 15606] Length = 307 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 84/286 (29%), Positives = 144/286 (50%), Gaps = 12/286 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ L++ER S TL +Y D + + + + +Q +++ F + Sbjct: 13 KAYLRYLKLERNYSPNTLDAYSHDIAWLIDYCKREERDLLGLQ------LEDLQHFAASL 66 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 IG RS R LSGI+SF ++L + + LP L+ ++ L Sbjct: 67 HEFHIGPRSQSRILSGIRSFFRFLLLDGYIDNDPTELLESPVLGQHLPEVLSTEEVDRLE 126 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 +++ L +K RN I+ +L+ CGLR+SE + L + D +R+ GKG K R Sbjct: 127 ESIDL-----SKPEGQRNRTIIEVLFSCGLRVSELVHLKLSELYLDDGFIRVLGKGSKER 181 Query: 199 IVPLLP-SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP+ P ++++ L + D D+ + +F RG L + I++ G+ Sbjct: 182 LVPISPRAIKELRLWFADRVHLDIKPGEEDFVFLNRRGHHLTRTMILIMIKRQAEEAGIK 241 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + + HTLRHSFAT LL G DLR+IQ++LGH + TT+IYT++++ Sbjct: 242 KTISPHTLRHSFATALLQGGADLRAIQAMLGHEHIGTTEIYTHIDT 287 >gi|311278186|ref|YP_003940417.1| tyrosine recombinase XerD [Enterobacter cloacae SCF1] gi|308747381|gb|ADO47133.1| tyrosine recombinase XerD [Enterobacter cloacae SCF1] Length = 298 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 91/308 (29%), Positives = 160/308 (51%), Gaps = 19/308 (6%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 L + + +L L +E+ L++ TL +Y R + A+ ++++T + +++ Sbjct: 5 LAQIEQFLDALWLEKNLAENTLSAYR---RDLTMVAAWLQHRGLSLETAQP---GDLQNL 58 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 +++R S R LS ++ ++L + KI + + + K LP+ L+E Q Sbjct: 59 LAERVDGGYKATSSARLLSAMRRLFQHLYREKIRPDDPSAQLASPKLPQRLPKDLSEAQV 118 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 L+ L+ ++ R+ A+L +LY GLR+SE + L+ +I Q +R+ GKG Sbjct: 119 DRLLQAPLVDQP-----LELRDKAMLEVLYATGLRVSELVGLSMSDISLRQGVVRVIGKG 173 Query: 195 DKIRIVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 +K R+VPL + Y + P+ LN ++I + LF R + + F I+ R Sbjct: 174 NKERLVPLGEEAVYWLENYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAR 232 Query: 253 YLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 G+ + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + Sbjct: 233 LAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LR 288 Query: 312 EIYDQTHP 319 +++ Q HP Sbjct: 289 QLHQQHHP 296 >gi|224282694|ref|ZP_03646016.1| site-specific tyrosine recombinase XerC [Bifidobacterium bifidum NCIMB 41171] Length = 334 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 93/334 (27%), Positives = 154/334 (46%), Gaps = 46/334 (13%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L RGLS T+++Y D R+ L LA I +RQ++ ++R +++ T Sbjct: 10 FLAYLRANRGLSGNTVKAYGTDVRECLHALA-----SRGIADLRQVTTDDLRGWMAFE-T 63 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + S+ R + ++SF + + + K ++LP L E QA L+D Sbjct: 64 RDHARSSMARKVVSVRSFFAWAHEHGRIEADPAAVLMTPKLPDTLPSVLTEAQAERLMDR 123 Query: 141 V----LLHTSHETKW-------------------------IDARNSAILYLLYGCGLRIS 171 V LH + ++ + R++A+L LLY G+R++ Sbjct: 124 VDDDASLHAASSQRYETRHDEMPRLDSAHRGEGMSQRDEVVALRDAAMLELLYATGIRVA 183 Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQ---- 226 E + L ++ T+R+ GKG K R+VP KA+ + + P L Sbjct: 184 ELVGLDIGDVDWSHRTIRVTGKGSKQRVVPFGDPAEKALAGWKEHGRPLILRRAGAGTLD 243 Query: 227 -LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285 LF G+RG+ ++ + + + + R G+P + H+LRHS ATH+L G DLR +Q Sbjct: 244 TAALFLGMRGRRIDQRIVRDVVHRAARESGVP-DISPHSLRHSAATHMLDGGADLREVQE 302 Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 +LGH L TTQ YT+V+ + + E Y Q P Sbjct: 303 MLGHSSLRTTQRYTHVSIEQ----LKERYRQAFP 332 >gi|320528392|ref|ZP_08029554.1| phage integrase, SAM-like domain protein [Solobacterium moorei F0204] gi|320131306|gb|EFW23874.1| phage integrase, SAM-like domain protein [Solobacterium moorei F0204] Length = 308 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 92/305 (30%), Positives = 150/305 (49%), Gaps = 20/305 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 + N++I G SK T+ SY D +Q++ FL E+ IT +++ I FI+ + Sbjct: 10 YFTNIKINEGKSKRTVSSYTNDLKQYMQFL---DEQGIT--NTKKIKPELIEEFIANQSE 64 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 K SL R + I+SF +++ + + LN++ K +LP VD Sbjct: 65 YK-ASTSLARMTAAIRSFHQFMTMMHDEPDPS-LNLQVHKGPKTLP-------IYCTVDE 115 Query: 141 V--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + L+ + +T D + +L +Y CGLR+SE +LT + D +R+ GKGDK R Sbjct: 116 IKRLMQSFDDTNIQDNLDHTLLETIYSCGLRVSEICNLTINRVDLDTGRIRVLGKGDKER 175 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 IVP+ + +Y + +L F G+ + + +++ L Sbjct: 176 IVPIPKGSIPLLKQYISITRVNLIQKKTNIFFLNRFGRKITSKYVELLLQRKCVELDFKK 235 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 T H LRHS+ATH+L G DLRSIQ ILGH + TT+IYT+V +K + + Y++ + Sbjct: 236 HITPHKLRHSYATHMLQGGADLRSIQEILGHSNIQTTEIYTHVQNK----QLFDAYNKFN 291 Query: 319 PSITQ 323 P +Q Sbjct: 292 PLASQ 296 >gi|34541361|ref|NP_905840.1| integrase/recombinase XerD [Porphyromonas gingivalis W83] gi|34397678|gb|AAQ66739.1| integrase/recombinase XerD [Porphyromonas gingivalis W83] Length = 308 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 82/256 (32%), Positives = 133/256 (51%), Gaps = 15/256 (5%) Query: 51 AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE 110 ++ T E I+ R++SY ++ F+++ I RS+ R +SG+KSF ++L + Sbjct: 37 SYLTAENISF---REVSYENLQHFVAELYDLGISARSIARIISGVKSFFRFLVLEEYIEA 93 Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170 + + LP L ++ L+ ++ RN AIL +LY CGLR+ Sbjct: 94 DPTELLEGPRIGVHLPTVLTIEEVDRLIGSI-----DPAAQGAQRNRAILEILYSCGLRV 148 Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD----LCPFDLNLNIQ 226 SE SL N+ ++S LRI GKG K R+VP+ + + Y P L + Sbjct: 149 SELTSLKFSNLFLNESFLRIDGKGRKQRLVPMSETAITELKRYLSDPERPTPV---LGQE 205 Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286 +F RGK ++ + I++L G+ S + HT RHSFATHLL G +L++IQ + Sbjct: 206 EYVFLSNRGKAISRIMVFVMIKKLAEEAGITKSISPHTFRHSFATHLLEGGANLQAIQLM 265 Query: 287 LGHFRLSTTQIYTNVN 302 LGH ++TT+IYT+++ Sbjct: 266 LGHENIATTEIYTHID 281 >gi|315618491|gb|EFU99077.1| tyrosine recombinase XerC [Escherichia coli 3431] Length = 282 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 89/293 (30%), Positives = 146/293 (49%), Gaps = 17/293 (5%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 +ER LS +TL +Y+ RQ + F +E +Q+ +Q T +R F + R + +G Sbjct: 1 MERQLSPITLLNYQ---RQLEAIINFASEN--GLQSWQQCDVTMVRNFAVRSRRKGLGAA 55 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 SL LS ++SF +L + + + K LP+ ++ L+D + Sbjct: 56 SLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI---- 111 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 + R+ A+L ++YG GLR+SE + L +++ + + + GKG K R +P+ + Sbjct: 112 --NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 169 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 I + DL DL + LF GK ++ Q+ + GL H LR Sbjct: 170 VAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLR 227 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ + +YD HP Sbjct: 228 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHP 276 >gi|294791028|ref|ZP_06756186.1| tyrosine recombinase XerD [Scardovia inopinata F0304] gi|294458925|gb|EFG27278.1| tyrosine recombinase XerD [Scardovia inopinata F0304] Length = 318 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 89/323 (27%), Positives = 154/323 (47%), Gaps = 20/323 (6%) Query: 2 EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61 + N LPE S L +L + +ERGL+ T+++YE D + ++++ T +K+T Sbjct: 8 DSNGLPEAYSTSL----SLFLGYISVERGLAAATVKAYESD---LIKYVSWLTHKKVTDP 60 Query: 62 TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121 Q+S + F++ +S+ R L+ I + +YL R ++ K Sbjct: 61 G--QISQQNVEDFVASLSLAGESQKSIARRLASIHEYHRYLSSRGQIQTDVSQTVKPPKA 118 Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 + LP L + +++ + T +T + R+ A+L LY G R+SEA+ L ++ Sbjct: 119 AAHLPDVLTIDEVSRMME--MTSTERDTDPVILRDRALLEFLYATGARVSEAVGLNMTDL 176 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGI----RGK 236 D R+ GKG K R+VPL A+ Y + + + P R + RGK Sbjct: 177 DLDSRCARLMGKGSKQRLVPLGSYACSALNRYLHGPRQYLQDKARSGPELRAVFLNKRGK 236 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 L+ ++ + HTLRHS ATHL+ G D+R++Q +LGH ++TTQ Sbjct: 237 RLSRQSVWEIVQAAANRAHISKEVHPHTLRHSCATHLIRGGADVRTVQELLGHASVTTTQ 296 Query: 297 IYTNVNSKNGGDWMMEIYDQTHP 319 +YT+++ + ++E Y HP Sbjct: 297 LYTHISPQT----LIETYITAHP 315 >gi|221194870|ref|ZP_03567927.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626] gi|221185774|gb|EEE18164.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626] Length = 313 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 93/309 (30%), Positives = 147/309 (47%), Gaps = 24/309 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++ L R LS T ++Y D ++ + EE +Q ++ +RA++S Sbjct: 16 EFIAYLRTVRNLSDNTTRAYSVDLASYISWCK--REELDPLQA----THRSLRAYLSYLD 69 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + R+L R LS ++ F K+L K K L + + + S LP+ ++++ V Sbjct: 70 QARYSARTLNRHLSALRGFYKWLNKEKYLEVDPSLILTSPRTSRRLPQTMSDED----VQ 125 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 +LL +T + R+ AIL +Y G RISE L +++ Q +R+ GKG K R Sbjct: 126 KLLLSCDTDTA-VGLRDRAILECMYATGARISEISHLDREDVDMSQGVVRLFGKGSKERD 184 Query: 200 VPLLPSVRKAILEYYDLCPFDL---------NLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 VPL + R + Y L N + LF IRG ++ V ++ Sbjct: 185 VPLYKTARDWLEAYMYGARSQLIGKGRKSLRNPREEKALFVSIRGHRMSADVLRKMFETY 244 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 + GL T H +RH+FAT LLS G DLR +Q +LGH LSTTQIYT+++ + + Sbjct: 245 VKKAGLDPMLTPHAMRHTFATELLSGGADLRVVQELLGHQSLSTTQIYTHLSIER----L 300 Query: 311 MEIYDQTHP 319 + Q HP Sbjct: 301 KDAAKQAHP 309 >gi|169634632|ref|YP_001708368.1| site-specific tyrosine recombinase [Acinetobacter baumannii SDF] gi|169153424|emb|CAP02561.1| site-specific tyrosine recombinase [Acinetobacter baumannii] Length = 306 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 81/240 (33%), Positives = 130/240 (54%), Gaps = 11/240 (4%) Query: 82 KIGD--RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 K+G RS+ R LS ++ F K L+++K+ +++ + + K +LP+ L+E+ L+ Sbjct: 74 KVGKSPRSIARCLSALRQFYKSLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVEALIQ 133 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + T+ + R+ A+ +LY CGLR+SE L+L + I Q LRI GKG+K R+ Sbjct: 134 APDITTA-----LGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRITGKGNKERL 188 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 VPL + Y + L + LF G ++ F I++ + Sbjct: 189 VPLGQYACDWVERYLNEARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAE 248 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V M +++++ HP Sbjct: 249 LSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR----MQQLHEKHHP 304 >gi|239813909|ref|YP_002942819.1| integrase family protein [Variovorax paradoxus S110] gi|239800486|gb|ACS17553.1| integrase family protein [Variovorax paradoxus S110] Length = 356 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 85/314 (27%), Positives = 152/314 (48%), Gaps = 28/314 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+++ +ER L+ T++ Y + A +QT IR ++++ Sbjct: 16 YLEHVRVERRLAARTVELYAIHLQALAANAAEAGLPLDRVQT------AHIRRWMAQLHG 69 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 R + LS +SF ++L + + + ++ K + LP+AL A+ L + Sbjct: 70 AGREPRGIALVLSCWRSFYRWLGNEGLVGFNPVKDVHAPKAARPLPKALAVDDAVRLAE- 128 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL------TPQNIMD-DQSTLRIQGK 193 L+ W +AR+ AI+ +LYGCGLR+SE L T + +D D + GK Sbjct: 129 --LYDPEADPWTEARDGAIVEVLYGCGLRVSELTGLDARASNTARGWVDLDALEANVLGK 186 Query: 194 GDKIRIVPLLPSVRKAILEYYDL---CPFDLNLNIQLP-----LFRGIRGKPLNPGVFQR 245 G K RIVP+ +A+ +++ + C ++ P LF +G ++ + Sbjct: 187 GSKRRIVPIGSKAAEALRDWFAVRGECAALSTAALRDPAGAAALFISAKGVRMSSQAVWK 246 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 +R+ GL H LRHSFA+H+L + DLR++Q +LGH ++TTQ+YT ++ ++ Sbjct: 247 LLRERSLKAGLAAPVHPHMLRHSFASHVLQSSSDLRAVQELLGHANIATTQVYTRLDFQH 306 Query: 306 GGDWMMEIYDQTHP 319 + ++YD HP Sbjct: 307 ----LAKVYDAAHP 316 >gi|237807746|ref|YP_002892186.1| tyrosine recombinase XerD [Tolumonas auensis DSM 9187] gi|237500007|gb|ACQ92600.1| tyrosine recombinase XerD [Tolumonas auensis DSM 9187] Length = 297 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 90/303 (29%), Positives = 149/303 (49%), Gaps = 18/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L ++RGLS T+ SY D + +L +T+ T+ + A+++ R Sbjct: 9 EQFLDMLWLDRGLSDNTISSYRTDLYKLNDWLDSKASSYLTLDTLL------LHAYLAWR 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q S R LS ++ F ++L + ++ + + + + K LP+ ++E+Q Sbjct: 63 IDQGFKATSTARLLSALRRFYQFLIREQLRADDPTVALDSPKLPLRLPKDISEEQV---- 118 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL I+ R+ A+L LLY GLR+SE + L + + + +R+ GKG+K R Sbjct: 119 -EALLAEPDVQDPIELRDKAMLELLYATGLRVSELVGLQMHQLASNMAYVRVTGKGNKDR 177 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VP + I + L L+ Q LF R + + F I+ + Sbjct: 178 LVPTGEEAQYWIQRFMREGRMTL-LHEQASDVLFPSNRSQQMTRQTFWHRIKLYAVRANI 236 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + E++ + Sbjct: 237 TSDLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQAR----LQELHQE 292 Query: 317 THP 319 HP Sbjct: 293 HHP 295 >gi|62182418|ref|YP_218835.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62130051|gb|AAX67754.1| putative integrase/recombinase, site-specific [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322716911|gb|EFZ08482.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 300 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 91/311 (29%), Positives = 153/311 (49%), Gaps = 17/311 (5%) Query: 9 IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68 + L ++ +L+ L +ER LS +TL +Y+ RQ +A E +++ +Q Sbjct: 1 MTDVALSQDVSRFLRYLGVERQLSPITLLNYQ---RQLDAIIALAGEA--GLKSWQQCDA 55 Query: 69 TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 +R+F + R + +G SL LS ++SF +L + + + K LP+ Sbjct: 56 AIVRSFAVRSRRKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKN 115 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 ++ L+D L + R+ A+L ++YG GLR+SE + L +++ D + Sbjct: 116 IDVDDVNRLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEV 169 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 + GKG K R +P+ + I + DL L + + LF GK ++ Q+ Sbjct: 170 WVMGKGSKERRLPIGRNAVTWIEHWLDLR--GLFASDEEALFLSKLGKRISARNVQKRFA 227 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 + GL H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ Sbjct: 228 EWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH--- 284 Query: 309 WMMEIYDQTHP 319 + +YD HP Sbjct: 285 -LASVYDAAHP 294 >gi|16767219|ref|NP_462834.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167553868|ref|ZP_02347612.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167993887|ref|ZP_02574980.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168233881|ref|ZP_02658939.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168822681|ref|ZP_02834681.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194470289|ref|ZP_03076273.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197251815|ref|YP_002148873.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|224585764|ref|YP_002639563.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912952|ref|ZP_04656789.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|2497413|sp|P55888|XERC_SALTY RecName: Full=Tyrosine recombinase xerC gi|1916339|gb|AAC45778.1| site-specific recombinase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|6960253|gb|AAF33443.1| S. typhimurium site-specific recombinase (XERC) (SP:P55888); contains similarity to Pfam family PF00589 ('Phage' integrase family), score=227.1, E=2.5e-64, N=1 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16422513|gb|AAL22793.1| putative site-specific integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194456653|gb|EDX45492.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197215518|gb|ACH52915.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205321790|gb|EDZ09629.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328137|gb|EDZ14901.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332099|gb|EDZ18863.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205340961|gb|EDZ27725.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|224470292|gb|ACN48122.1| tyrosine recombinase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261249072|emb|CBG26933.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996228|gb|ACY91113.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160464|emb|CBW19994.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915067|dbj|BAJ39041.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320088359|emb|CBY98119.1| Tyrosine recombinase xerC [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225467|gb|EFX50524.1| Tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323132296|gb|ADX19726.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332990784|gb|AEF09767.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 300 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 91/311 (29%), Positives = 153/311 (49%), Gaps = 17/311 (5%) Query: 9 IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68 + L ++ +L+ L +ER LS +TL +Y+ RQ +A E +++ +Q Sbjct: 1 MTDVALSQDVSRFLRYLGVERQLSPITLLNYQ---RQLDAIIALAGE--TGLKSWQQCDA 55 Query: 69 TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 +R+F + R + +G SL LS ++SF +L + + + K LP+ Sbjct: 56 AIVRSFAVRSRRKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKN 115 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 ++ L+D L + R+ A+L ++YG GLR+SE + L +++ D + Sbjct: 116 IDVDDVNRLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEV 169 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 + GKG K R +P+ + I + DL L + + LF GK ++ Q+ Sbjct: 170 WVMGKGSKERRLPIGRNAVTWIEHWLDLR--GLFASDEEALFLSKLGKRISARNVQKRFA 227 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 + GL H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ Sbjct: 228 EWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH--- 284 Query: 309 WMMEIYDQTHP 319 + +YD HP Sbjct: 285 -LASVYDAAHP 294 >gi|291287439|ref|YP_003504255.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] gi|290884599|gb|ADD68299.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] Length = 295 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 84/290 (28%), Positives = 145/290 (50%), Gaps = 18/290 (6%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L+ NW+Q E GL++ ++++Y D ++ F T++ + + E+ Sbjct: 5 KLVSNFTNWMQ---YEMGLAENSVKAYHQDIENYIAF---------TLKPLVECGAQELV 52 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 A+++ R +++R +SGI F +L KI + + + + K LP LN Sbjct: 53 AYMTHLRKSGASIETVQRRISGISRFYDFLIMEKIISSNPVGFVSKPSKWEKLPVFLNFD 112 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + L+++ + + + R+ I +Y G+RISE + L ++ + +++ G Sbjct: 113 EVEKLINSPDMSSG-----LGYRDRIIFETMYSTGMRISELVGLKVLDMDMHREIMKVTG 167 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 KG K R VP+ S+ + + Y D+ L + LF GK L+ I++ Sbjct: 168 KGSKQRFVPMYGSLAEKMKTYLDIRHDSLVKERDEGWLFLSRNGKKLDREYVWMIIKKYC 227 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G+ + + HTLRHSFATHLL+NG DLR+IQ +LGH LSTT+ YT V Sbjct: 228 ERAGIKKNVSPHTLRHSFATHLLTNGADLRTIQVLLGHVDLSTTERYTQV 277 >gi|270290225|ref|ZP_06196450.1| tyrosine recombinase XerC [Pediococcus acidilactici 7_4] gi|304384961|ref|ZP_07367307.1| tyrosine recombinase XerC [Pediococcus acidilactici DSM 20284] gi|270281006|gb|EFA26839.1| tyrosine recombinase XerC [Pediococcus acidilactici 7_4] gi|304329155|gb|EFL96375.1| tyrosine recombinase XerC [Pediococcus acidilactici DSM 20284] Length = 301 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 86/289 (29%), Positives = 145/289 (50%), Gaps = 15/289 (5%) Query: 20 NWLQN----LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 +W++ L +ER S T+ +Y D ++F FL T K + + + + F+ Sbjct: 2 DWIEQFKRYLTVERQYSDKTVTAYLEDLQEFQKFLQ-TTGNKPELLAVDRF---DANVFM 57 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 S Q + S+ R +S +++F ++L K + ++ ++ K ++ LPR EK+ Sbjct: 58 SYLFDQNLKRTSISRKVSSLRAFYRFLIKNDVIAKNPFEFVQLKKHADHLPRFFYEKEMN 117 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L D V + + RN+A+L +LYG G+R+SE +L +I T+ + GKG+ Sbjct: 118 QLFDTVY----QDQGPLHLRNAALLEVLYGTGMRVSECTNLRWTDIDFSMQTILVLGKGN 173 Query: 196 KIRIVPLLPSVRKAILEYYD---LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 K R VP + A+ +Y+ + +F G+P+ + + Q+ + Sbjct: 174 KERYVPFGRYAKHALEDYHQNEWTSLLEKYHQTHQYVFVNHYGQPITVAGVEYVLNQIIK 233 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 L H LRHSFAT +L+NG DLR++Q +LGH LSTTQIYT+V Sbjct: 234 NSSLNGKIHPHMLRHSFATAMLNNGADLRTVQELLGHASLSTTQIYTHV 282 >gi|189501600|ref|YP_001957317.1| integrase family protein [Candidatus Amoebophilus asiaticus 5a2] gi|189497041|gb|ACE05588.1| integrase family protein [Candidatus Amoebophilus asiaticus 5a2] Length = 292 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 89/301 (29%), Positives = 147/301 (48%), Gaps = 13/301 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +N++ L E+ LS T+ +Y+ D Q +L + I + + +R++I + Sbjct: 3 ENFINFLTYEKRLSSHTICAYQTDLNQLFSYL----QTNFQIAELSHATSKLLRSWIMEL 58 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q + +RS+ R ++ +K+F +L K++ + LK LP L E++ L L+ Sbjct: 59 AKQGLNNRSINRKIASLKAFYGFLYKKEYIPSDITTQLTGLKVKKGLPIFLREQELLHLL 118 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D E W R IL LLY G+R+ E ++L ++I T+R+ GK +K R Sbjct: 119 DEHPFTDDFE-GW---RARLILELLYSTGIRLQELINLQDRDINFYDRTIRVLGKRNKER 174 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 I+PL P I+E Y + N F KP P + + ++ Sbjct: 175 ILPL-PKHILPIIEGYLQQRNTIIANAPAHFFVTTNNKPCYPMLIYKLVKSYLASYTQAD 233 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + H LRH+FATHLL+ G DL++I+ +LGH L+ TQ+YT+ N + + EI+ Q H Sbjct: 234 RHSPHILRHTFATHLLNRGADLQAIKELLGHTSLAATQVYTH----NSMEKLKEIFLQAH 289 Query: 319 P 319 P Sbjct: 290 P 290 >gi|260893180|ref|YP_003239277.1| tyrosine recombinase XerD [Ammonifex degensii KC4] gi|260865321|gb|ACX52427.1| tyrosine recombinase XerD [Ammonifex degensii KC4] Length = 302 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 91/308 (29%), Positives = 148/308 (48%), Gaps = 26/308 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ L +ERGL+ T+ +Y D + F F+A + + ++R ++ + Sbjct: 7 EEFLEFLRVERGLADNTIAAYRTDLKHFCAFVA-RRQFSLDPSSLRDACL----CYLYEL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL------NMRNLKKSNSLPRALNEK 132 ++ R L+ +KSF YL T++ L + + K LP+ L + Sbjct: 62 NAAGYLASTVARRLAALKSFCAYL-----ATQAGYLPWDPAEELSSPKIPERLPKVLRPE 116 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + L+ +T R+ A+L L Y G+R+SE + L ++ + +R+ G Sbjct: 117 EVERLLTAPRTNTPQ-----GLRDRALLELAYATGMRVSELVGLDVDHLNLEAGYVRVLG 171 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 KG K RIVP+ + + EY + P + LF RG L + ++ Sbjct: 172 KGGKERIVPVGRVAQHYLREYLEKAWPRLVKDRRTSALFVNRRGGRLTRQAVFKLLKDYA 231 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 R GL + + HTLRHSFATHLL NG DLR +Q +LGH +STTQIYT++ S + Sbjct: 232 RQAGLTSAPSPHTLRHSFATHLLENGADLRVVQELLGHVSISTTQIYTHLTSTR----VR 287 Query: 312 EIYDQTHP 319 E+Y + HP Sbjct: 288 EVYRRAHP 295 >gi|260655111|ref|ZP_05860599.1| integrase/recombinase XerD [Jonquetella anthropi E3_33 E1] gi|260630222|gb|EEX48416.1| integrase/recombinase XerD [Jonquetella anthropi E3_33 E1] Length = 319 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 84/317 (26%), Positives = 141/317 (44%), Gaps = 20/317 (6%) Query: 9 IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68 + +F+L ++ + + + S T +Y D QF F E ++ L+ Sbjct: 21 VAAFDLETWIGRYIDWISLAQNCSPATALNYRSDLEQFAAFAGQKGEADLSA-----LTP 75 Query: 69 TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 +R FI + S+ R LS ++ F YL + L +R K + LP+A Sbjct: 76 ERVRLFIRGLSGWGLSATSVSRKLSALRGFCGYLTDQSAIPSDPTLPIRGPKWPDHLPQA 135 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 L + L+ ++ T ARN +L L Y GLR++E +SL ++ + + + Sbjct: 136 LTQDAVNRLI------SAAGTIEPAARNRCLLELAYSAGLRVAELVSLKWSDLDETERWI 189 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 + GKG K R+VP A+ E+ CP + F G GK L R + Sbjct: 190 TVMGKGSKERMVPYGQWAASALAEWKAQCPPSEKGWV----FPGKGGKSLTERTVHRLVE 245 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 + G P + HTLRH FATH+L G ++++Q +LGH L TTQ Y ++ + Sbjct: 246 AASQLAGTP-GASPHTLRHCFATHMLEGGASVKAVQELLGHESLLTTQRYLRISPER--- 301 Query: 309 WMMEIYDQTHPSITQKD 325 + YD + ++++D Sbjct: 302 -LRRSYDDVNDDLSERD 317 >gi|313139852|ref|ZP_07802045.1| site-specific tyrosine recombinase XerC [Bifidobacterium bifidum NCIMB 41171] gi|313132362|gb|EFR49979.1| site-specific tyrosine recombinase XerC [Bifidobacterium bifidum NCIMB 41171] Length = 351 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 93/334 (27%), Positives = 154/334 (46%), Gaps = 46/334 (13%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L RGLS T+++Y D R+ L LA I +RQ++ ++R +++ T Sbjct: 27 FLAYLRANRGLSGNTVKAYGTDVRECLHALASRG-----IADLRQVTTDDLRGWMAFE-T 80 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + S+ R + ++SF + + + K ++LP L E QA L+D Sbjct: 81 RDHARSSMARKVVSVRSFFAWAHEHGRIEADPAAVLMTPKLPDTLPSVLTEAQAERLMDR 140 Query: 141 V----LLHTSHETKW-------------------------IDARNSAILYLLYGCGLRIS 171 V LH + ++ + R++A+L LLY G+R++ Sbjct: 141 VDDDASLHAASSQRYETRHDEMPRLDSAHRGEGMSQRDEVVALRDAAMLELLYATGIRVA 200 Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQ---- 226 E + L ++ T+R+ GKG K R+VP KA+ + + P L Sbjct: 201 ELVGLDIGDVDWSHRTIRVTGKGSKQRVVPFGDPAEKALAGWKEHGRPLILRRAGAGTLD 260 Query: 227 -LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285 LF G+RG+ ++ + + + + R G+P + H+LRHS ATH+L G DLR +Q Sbjct: 261 TAALFLGMRGRRIDQRIVRDVVHRAARESGVP-DISPHSLRHSAATHMLDGGADLREVQE 319 Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 +LGH L TTQ YT+V+ + + E Y Q P Sbjct: 320 MLGHSSLRTTQRYTHVSIEQ----LKERYRQAFP 349 >gi|212715582|ref|ZP_03323710.1| hypothetical protein BIFCAT_00481 [Bifidobacterium catenulatum DSM 16992] gi|212660949|gb|EEB21524.1| hypothetical protein BIFCAT_00481 [Bifidobacterium catenulatum DSM 16992] Length = 317 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 90/319 (28%), Positives = 153/319 (47%), Gaps = 31/319 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L ++++ERGLSK T+ +Y D +++ +LA I I ++ ++ +++ Sbjct: 9 RQFLAHIDVERGLSKATVSAYGADLKKYRQWLA-----NRGINDITSVTTQDVENYVAFL 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 RS R L+ I +F ++ + ++ K +++LP L + L+ Sbjct: 64 DESGESARSKARRLASIHAFHRFAVDEHSVADDVSAQVKAPKGASTLPDVLAIDEVARLL 123 Query: 139 -----------DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 D+ L S + + R+ A+L +Y G R+SEA ++ + Sbjct: 124 EAIPVSQNRACDDASLEVSDDPVML--RDKALLEFMYATGARVSEACGANLDDVDTESRI 181 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGV 242 R+ GKG K R+VP+ +AI Y L + P LF RG+ L+ Sbjct: 182 ARLMGKGSKQRLVPVGSYACEAISRYVRSGRPILESKSKGPQERRALFLNKRGRRLSRQS 241 Query: 243 FQRYIRQL--RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 IR R ++ PL HTLRHSFATHL+ G D+R++Q +LGH ++TTQIYT+ Sbjct: 242 VWEIIRVAGERAHIDKPLHP--HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTH 299 Query: 301 VNSKNGGDWMMEIYDQTHP 319 V+ +N ++E Y +HP Sbjct: 300 VSPEN----LIETYLTSHP 314 >gi|116491053|ref|YP_810597.1| tyrosine recombinase XerC subunit [Oenococcus oeni PSU-1] gi|118586889|ref|ZP_01544323.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163] gi|290890534|ref|ZP_06553609.1| hypothetical protein AWRIB429_0999 [Oenococcus oeni AWRIB429] gi|116091778|gb|ABJ56932.1| tyrosine recombinase XerC subunit [Oenococcus oeni PSU-1] gi|118432721|gb|EAV39453.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163] gi|290479930|gb|EFD88579.1| hypothetical protein AWRIB429_0999 [Oenococcus oeni AWRIB429] Length = 307 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 83/310 (26%), Positives = 152/310 (49%), Gaps = 28/310 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + + L+ ER S LTL++Y D +F+ F + + + + ++R +++ Sbjct: 9 KKYEEYLQAERQYSTLTLKAYREDIGEFVNFFS----QNGGFKDFSAIDRFDVRIYLNNL 64 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 +K+ S+ R +S ++SF +L + + ++ N+ + LP L + + + Sbjct: 65 YERKLAKTSIARKISSLRSFYHFLIENSLAKKNPFANIEFRSSNKKLPEFLYPAEVIEYL 124 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 +++ RNSA++ LLY G+RI E +LT I + + I GKG K R Sbjct: 125 RAAA--DPQNDQYL--RNSALIELLYATGMRIFEITNLTFSQIDFNSQIVDITGKGKKQR 180 Query: 199 IVPL-----------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 I+P LP K + ++ + + +F RG+ L + + Sbjct: 181 IIPFGKPALASLKQYLPWREKTMQKFSEKHSY---------IFINTRGRQLTETGAEYIL 231 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 +Q+ + L + H LRHSFATHLL+NG D+R++Q +LGH LSTTQIYT++ ++N Sbjct: 232 KQVSKRSKLTANIHPHMLRHSFATHLLNNGADIRTVQELLGHASLSTTQIYTHITTENLQ 291 Query: 308 DWMMEIYDQT 317 + + +D+ Sbjct: 292 ENYKKFFDRA 301 >gi|89898494|ref|YP_515604.1| site-specific tyrosine recombinase XerC [Chlamydophila felis Fe/C-56] gi|123763207|sp|Q253S9|XERC_CHLFF RecName: Full=Tyrosine recombinase xerC gi|89331866|dbj|BAE81459.1| integrase/recombinase [Chlamydophila felis Fe/C-56] Length = 312 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 92/313 (29%), Positives = 148/313 (47%), Gaps = 25/313 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLA-------------FYTEEKITIQTIRQL 66 ++L+N+ + S TL++Y D F +FL F E + T Sbjct: 10 DYLKNI---KAASPHTLRNYCIDLNSFKVFLEKHGKLSPSMPICLFSKERQETNLPFSLF 66 Query: 67 SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126 + +R +I + + R++KR LS IKSF Y K +I E + + LP Sbjct: 67 TKDAVRLYILELMQENKAKRTIKRRLSAIKSFSHYCLKHRILLEDPTETIHGPRLPKELP 126 Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 + +Q +L+ T +K+ R+ +L L Y GLRISE +SL +I + + Sbjct: 127 SPITYEQV-----EILMATPDLSKYTGLRDRCLLELFYSSGLRISEIVSLNHWDIDFNSN 181 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 +RI+GKG K RI+P+ + + +Y + +F G L R Sbjct: 182 LIRIRGKGKKERIIPITTLAAQWLKQYLNHPERAGVAKDSQAIFLNCFGTRLTTRSIDRK 241 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 ++ R GL + T HT+RH+ ATH L NG DL++IQ++LGH L TT IYT+V+ K Sbjct: 242 FQKYLRLSGLSGNITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTHVSMK-- 299 Query: 307 GDWMMEIYDQTHP 319 + ++++HP Sbjct: 300 --LKKQTHNESHP 310 >gi|294340185|emb|CAZ88557.1| Tyrosine recombinase xerD [Thiomonas sp. 3As] Length = 317 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 89/285 (31%), Positives = 143/285 (50%), Gaps = 19/285 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E GLS TL +Y D +LAF + + T+R +++A+I+ R Q Sbjct: 28 LWLEDGLSPNTLAAYRRDLTLMARWLAFSQRQPLIEATLR-----DVQAYIAARFMQSKA 82 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S R L ++ F ++ + + T+ L + ++ P+ L+E Q V+ +L Sbjct: 83 TSS-NRRLVVLRRFYRWALREHLRTDDPTLQLDTARQPPRRPKTLSEAQ----VEALLAA 137 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 +T + R+ A+L LLY GLR+SE ++L + DQ ++I GKG K R+VP Sbjct: 138 PEVDTP-LGLRDRAMLELLYASGLRVSELVALPVVRVSLDQGVVQIAGKGGKERLVPFGS 196 Query: 205 SVRKAILEYYDLCPFDLNLNIQLP-LFRGIRG-------KPLNPGVFQRYIRQLRRYLGL 256 + + + Y +L P LF R + +F I+ R G+ Sbjct: 197 AAQDWLQNYLRTARHELLQGRDSPFLFVTARSGQSARETTGMTRQMFWMRIKAYARKAGI 256 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + + HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT++ Sbjct: 257 DVPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHI 301 >gi|332874932|ref|ZP_08442783.1| tyrosine recombinase XerD [Acinetobacter baumannii 6014059] gi|323516350|gb|ADX90731.1| site-specific recombinase XerD [Acinetobacter baumannii TCDC-AB0715] gi|332736875|gb|EGJ67851.1| tyrosine recombinase XerD [Acinetobacter baumannii 6014059] Length = 306 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 80/240 (33%), Positives = 129/240 (53%), Gaps = 11/240 (4%) Query: 82 KIGD--RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 K+G RS+ R LS ++ F K+L+++K+ +++ + + K +LP+ L E+ L+ Sbjct: 74 KVGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLCEEDVEALIQ 133 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + T+ + R+ A+ +LY CGLR+SE L+L + I Q LRI GKG+K R+ Sbjct: 134 APDITTA-----LGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRITGKGNKERL 188 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 VPL + Y + + LF G ++ F I++ + Sbjct: 189 VPLGQYACDWVERYLNEARPQFYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAE 248 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V M +++++ HP Sbjct: 249 LSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR----MQQLHEKHHP 304 >gi|326771762|ref|ZP_08231047.1| site-specific recombinase, phage integrase family [Actinomyces viscosus C505] gi|326637895|gb|EGE38796.1| site-specific recombinase, phage integrase family [Actinomyces viscosus C505] Length = 307 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 87/302 (28%), Positives = 145/302 (48%), Gaps = 19/302 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT-IRQLSYTEIRAFISKRRTQKI 83 L ++R LS T+++Y D L FL + + + L ++R +++ Sbjct: 16 LALQRDLSGHTVRAYLVDINDLLSFLGVGEGDAEPVDAALATLDLADLRDWLAAMAASGH 75 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 +L R + +++F + + + T +R + N LP L +QA L+ Sbjct: 76 SRATLARRSASVRTFSSWAFETGLLTSDVAARLRAPRVDNRLPGVLTTQQASQLLKTAS- 134 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL- 202 + + + R+ AI+ LY G+R+SE + L ++ Q TLR+ GKG K R VP Sbjct: 135 DLASDGHVLAVRDLAIIETLYATGVRVSELVGLDVADLDHSQRTLRVLGKGRKERTVPYG 194 Query: 203 LPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 LP+ + LE + ++C D LF G RG+ ++P + + +L +P Sbjct: 195 LPAAKA--LETWLHRRGEICAVDAGG----ALFLGARGRRIDPRAVRDVVHRLCAAAQVP 248 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 H LRHS ATH+L G DLRS+Q LGH L+TTQ YT+V+++ + +Y+Q Sbjct: 249 -DLGPHGLRHSTATHVLGGGADLRSVQEFLGHSSLATTQRYTHVSAER----LRSVYEQA 303 Query: 318 HP 319 P Sbjct: 304 FP 305 >gi|326384761|ref|ZP_08206438.1| site-specific tyrosine recombinase XerD [Gordonia neofelifaecis NRRL B-59395] gi|326196569|gb|EGD53766.1| site-specific tyrosine recombinase XerD [Gordonia neofelifaecis NRRL B-59395] Length = 307 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 93/310 (30%), Positives = 147/310 (47%), Gaps = 28/310 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI----- 75 +L +L +ERG + T+ SY D ++ FLA + T+ +++ ++RAF+ Sbjct: 12 YLDHLTVERGSATNTVASYRRDLLRYNTFLAGRG-----VTTMSEVTEDDVRAFLVALRR 66 Query: 76 --SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 +R + D S+ R+L + F K+ +T ++R K LP++L Sbjct: 67 GDPERGVPGLADSSVARTLVAARGFHKFCAAEGLTATDVAHSVRPPKPPRRLPKSLPIDD 126 Query: 134 ALTLVDNVLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 L ++D +D R+ A++ LLY CG RISE SL ++ + + Sbjct: 127 VLAILD--------AAGAVDGPRGLRDRALVELLYSCGARISEVTSLDLDDLDLEHRAVV 178 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 ++GKG K RIVP+ +A+ Y L LF IRG L+ + + Sbjct: 179 LRGKGGKERIVPVGGPAIEAVDAYLVRGRPALVKKSTPALFLNIRGGRLSRQSAWQVLVD 238 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 G+ + HTLRHSFATHLL G D+R +Q +LGH ++TTQ+YT V Sbjct: 239 AAERAGVDKEVSPHTLRHSFATHLLDGGADVRVVQELLGHSSVTTTQVYTLVTVNT---- 294 Query: 310 MMEIYDQTHP 319 M E+Y +HP Sbjct: 295 MREVYATSHP 304 >gi|162448003|ref|YP_001621135.1| integrase/recombinase, XerD-like protein [Acholeplasma laidlawii PG-8A] gi|161986110|gb|ABX81759.1| integrase/recombinase, XerD-like protein [Acholeplasma laidlawii PG-8A] Length = 306 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 92/304 (30%), Positives = 149/304 (49%), Gaps = 16/304 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++ L IE+ S+ T SY D + F FL +E + + R +IS Sbjct: 6 DYKDYLIIEKNFSEHTAISYINDVKGFEDFL---IKEGLAKDLLGARRPRLARNYISYLD 62 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q +++ R LS +K+F YL +++ E+ +++ K + +LP ++E+ L D Sbjct: 63 NQDFKKKTIARKLSSLKNFYNYLIFKELIEENIFSDIKAPKVAKTLPHIIDEEAINYLFD 122 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 ++ +K + RN IL LLY CG+R SE ++L ++I + I GKG K R Sbjct: 123 SI-----DTSKPLGYRNLVILDLLYSCGVRASELINLEIKDIYLSSGQILIHGKGKKDRY 177 Query: 200 VPLLPSVRKAILEYYDLCPFDL----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 + L + + I Y L + Q LF +G PL + + Q+ + G Sbjct: 178 IILHEKLIEEIRHYLSFVRVTLLSKGDDTNQQKLFINYKGGPLTVRGLRVILNQMIKDSG 237 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H LRH+FAT +L++G DLR +Q +LGH L +TQIYT+V+ + + E Y Sbjct: 238 ETYAIHPHMLRHAFATTMLNHGADLRVVQELLGHEHLKSTQIYTHVSK----EQLKEKYM 293 Query: 316 QTHP 319 QTHP Sbjct: 294 QTHP 297 >gi|123440588|ref|YP_001004582.1| site-specific tyrosine recombinase XerC [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087549|emb|CAL10330.1| putative integrase/recombinase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 303 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 85/309 (27%), Positives = 155/309 (50%), Gaps = 17/309 (5%) Query: 11 SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70 S L + + +L+ L++ER LS LT+ SY RQ + E++ + + L + Sbjct: 5 STSLAPQVEAFLRYLKVERQLSPLTITSYR---RQLQALMEM--GEQMGLAHWQTLDAAQ 59 Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 +R+ +S+ + + SL LS ++SFL +L + + + + + LP+ ++ Sbjct: 60 VRSLVSRSKRAGLHSSSLALRLSALRSFLNWLVSQGVLQANPAKGVSTPRSGRHLPKNID 119 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 + L+D L + R+ A+L ++YG GLR+SE + + +++ + + Sbjct: 120 VDEVAKLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGMNCKHVDLASGEVWV 173 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 GKG K R VP+ + K + + +L +L +F GK ++ Q+ + Sbjct: 174 MGKGSKERKVPIGKTAVKWLDHWLELR--ELFEPQDDAIFLANTGKRISARNVQKRFAEW 231 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ H LRHSFATH+L + GDLR++Q +LGH L+TTQIYT+++ ++ + Sbjct: 232 GVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----L 287 Query: 311 MEIYDQTHP 319 +YD HP Sbjct: 288 ATVYDAAHP 296 >gi|315302916|ref|ZP_07873649.1| tyrosine recombinase XerC [Listeria ivanovii FSL F6-596] gi|313628712|gb|EFR97112.1| tyrosine recombinase XerC [Listeria ivanovii FSL F6-596] Length = 300 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 90/307 (29%), Positives = 151/307 (49%), Gaps = 17/307 (5%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 K Q +L L ER S+ T +YE D L F F E+ IT +Q+++ ++R ++ Sbjct: 6 KWEQMFLDYLHSERNYSENTSTAYEND---LLDFRRFLNEQAIT--QYKQVTFLDVRIYL 60 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 ++ + + ++ R +S ++SF +L + + TE+ + + K LP+ ++ Sbjct: 61 TELKQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEME 120 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L +++ +ET I R+ +L +LYG G+R+SE + +I + I+GKG+ Sbjct: 121 ALFQ--VVYEDNETLTI--RDRVLLEVLYGTGIRVSECAGILLTDIDQTYQAILIRGKGN 176 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNI---QLPLFRGIRGKPLNPGVFQRYIRQLRR 252 K R VP AI +Y D C L L G PL + + ++ Sbjct: 177 KERYVPFGVYAEDAITDYLD-CRLALMKRFNKTHDSLLINHYGDPLTTRGIRYCLTKIIS 235 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 L H LRH+FAT LL+NG D+R++Q +LGH LS+TQIYT+V ++ + Sbjct: 236 KASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH----LKS 291 Query: 313 IYDQTHP 319 Y + HP Sbjct: 292 TYMKHHP 298 >gi|325473776|gb|EGC76964.1| integrase/recombinase XerD [Treponema denticola F0402] Length = 267 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 75/240 (31%), Positives = 132/240 (55%), Gaps = 16/240 (6%) Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 FI R I +++ + ++ + SF ++L + ++ ++ K+ +LPR L+ + Sbjct: 17 FILHRSESGIMAKTIAKDIAALNSFFRFLIIEGVRKDNPSESIERPKREKTLPRVLSPDE 76 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 +L + L + + + R+ A+ L+Y GLR+SE ++L ++I D+ +++ GK Sbjct: 77 VDSLFAAIPLDSPN-----NIRDRALFELIYSAGLRVSEIVNLKMEDIFYDEDLIKVTGK 131 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL-------NLNIQLPLFRGIRGKPLN-PGVFQR 245 G+K RIVP + + + +Y +L N I +F RG L G+++R Sbjct: 132 GNKERIVPFGSAAKYWLKQYILEARTELLKPKHPENTLISGSVFLNNRGAVLTRKGIWKR 191 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 I +L + G+ T HTLRHS+ATHLL+ G DLRS+Q +LGH +STTQ+YT++ K+ Sbjct: 192 -INELSNFSGI--ETKVHTLRHSYATHLLAGGADLRSVQCLLGHSDISTTQVYTHIEDKS 248 >gi|303326777|ref|ZP_07357219.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3] gi|302862765|gb|EFL85697.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3] Length = 309 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 90/303 (29%), Positives = 153/303 (50%), Gaps = 21/303 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ--TIRQLSYTEIRAFISKR 78 WL L +RGLS T++SY D F +F EE++ + L EI +++ Sbjct: 20 WLDYLLAQRGLSPRTVESYGQDLESFFLF-----EEELAQSGGSASCLDEQEIFLYLAWL 74 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R++ R+L R LS +++F + + + L + N K LP L+ ++ + Sbjct: 75 RSRGNTGRTLARRLSALRAFFAFAVEEGTLKTNPALLLENPKLPQHLPEVLSREE----M 130 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + +L+ + K R+ +L +LY GLR+SE +L+ ++ + +R+ GKG K R Sbjct: 131 EKLLVLPDMDEK-SGRRDRCMLEMLYAAGLRVSELCNLSVADLDLQRGLVRVFGKGAKER 189 Query: 199 IVPLLPSVRKAILEYY-DLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VPL ++ + +Y P F N LF G+ L+ + +++ G+ Sbjct: 190 LVPLHDMIQALLGDYLRSWRPLFSPGGN---QLFVNRSGRALSRQYIWKMVKKYTLLAGI 246 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + + HT RHSFATHLL G DLR++Q +LGH +S T+IYT+V ++ + I+ Q Sbjct: 247 RRAVSPHTFRHSFATHLLEGGADLRAVQLLLGHADISATEIYTHVQAER----LRGIHHQ 302 Query: 317 THP 319 HP Sbjct: 303 FHP 305 >gi|260771236|ref|ZP_05880163.1| tyrosine recombinase XerD [Vibrio furnissii CIP 102972] gi|260613833|gb|EEX39025.1| tyrosine recombinase XerD [Vibrio furnissii CIP 102972] gi|315179158|gb|ADT86072.1| site-specific tyrosine recombinase XerD [Vibrio furnissii NCTC 11218] Length = 302 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 93/304 (30%), Positives = 153/304 (50%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + +ERGLS+ TL SY D + L ++ + + +S + ++ + + Sbjct: 13 EQFLDAMWMERGLSENTLMSYRNDLMKLLDWMQRHNYR------LDFISLSGLQEYQTWL 66 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q S R LS I+ +YL + K+ + + + K LP+ L+E Q Sbjct: 67 VDQDYKQTSRARMLSAIRRLFQYLHREKMRADDPSALLISPKLPKRLPKDLSEAQV---- 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + LL + I+ R+ A+L LLY GLR++E +SLT +NI Q +R+ GKG K R Sbjct: 123 -DALLSAPNPDDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGGKER 181 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VP+ + + I + L L Q +F R + + F I+ G+ Sbjct: 182 LVPMGENAIEWIETFLAQGRSHL-LGEQTSDVVFPSKRAQQMTRQTFWHRIKHYAVIAGI 240 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + H LRH+FATHLL+ G DLR +Q +LGH LSTTQIYT+V ++ + +++ Sbjct: 241 DVDKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHS 296 Query: 316 QTHP 319 + HP Sbjct: 297 EHHP 300 >gi|300767490|ref|ZP_07077402.1| tyrosine recombinase XerD [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300495309|gb|EFK30465.1| tyrosine recombinase XerD [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 305 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 93/307 (30%), Positives = 154/307 (50%), Gaps = 26/307 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT----IQTIRQLSYTEIRAFI 75 ++L L +ERGL + T++SY D F +L ++IT + L+Y + Sbjct: 16 DYLHFLRVERGLVENTIKSYSQDLTTFSEYL---MSQQITDYRVVDRYVLLNYLQYLDEA 72 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 K R I S+S ++ F +YL + +L + K++ LP+ L+ ++ Sbjct: 73 GKSRNTII------HSVSSLRKFFQYLAQMHAIDTDPMLKIDTPKRAQHLPQVLSPREVE 126 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L+ L+T + R+ +L ++Y GLR+SE ++LT ++ D ++ GKGD Sbjct: 127 RLLAVPKLNTP-----LGLRDRTLLEVMYATGLRVSETINLTMDDLHLDLGLIQTIGKGD 181 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR---GKPLNPGVFQRYIRQLRR 252 K RI+P+ I Y L + + I GK GV++ +++ Sbjct: 182 KERIIPIGDVAIDFITRYLKTARPKLVSAKRRNSYLFINNHGGKLSRQGVWKNLKAEVKA 241 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 G+ + T HTLRHSFATH+L NG DLR +Q +LGH +STTQIYT+++ K + E Sbjct: 242 -AGIEKNVTPHTLRHSFATHILENGADLRVVQELLGHADISTTQIYTHISKKR----LAE 296 Query: 313 IYDQTHP 319 +Y++ HP Sbjct: 297 VYNKYHP 303 >gi|90414248|ref|ZP_01222228.1| tyrosine recombinase [Photobacterium profundum 3TCK] gi|90324695|gb|EAS41236.1| tyrosine recombinase [Photobacterium profundum 3TCK] Length = 304 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 86/292 (29%), Positives = 150/292 (51%), Gaps = 16/292 (5%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87 ER LS T Q+Y+ RQ ++T T+ + +R SK + S Sbjct: 22 ERELSLHTQQNYK---RQLSTIAEQLVSFEVTDWTMVDAGW--VRQIASKGMRDGLKASS 76 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 + LS ++SF +L ++ I + + +K+ LP+ L+ + +D +L + + Sbjct: 77 ISMRLSALRSFFDFLVQKDILKANPAKGVAAPRKARPLPKNLDVDE----MDQLL--SVN 130 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207 E + R+ A++ L+YG GLR++E +SL ++I + +R+ GKGDK RIVP R Sbjct: 131 EDDPLSIRDRAMMELMYGAGLRLAELVSLNVRDISLSKGDIRVIGKGDKERIVPFAGLAR 190 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 + + + + L + LF G ++ Q+ + + + + H LRH Sbjct: 191 EWVANWLKVRG-SLASGDESGLFVSKLGTRISTRNVQKRMAEWGQKQAVSSHINPHKLRH 249 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 SFATH+L + GDLR++Q +LGH LSTTQIYT+++ ++ + ++YD+ HP Sbjct: 250 SFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LAKVYDEAHP 297 >gi|295677507|ref|YP_003606031.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1002] gi|295437350|gb|ADG16520.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1002] Length = 316 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 89/296 (30%), Positives = 140/296 (47%), Gaps = 17/296 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E GLS+ TL +Y D R F +LA + + LS A+ + R QK Sbjct: 35 LWLEHGLSRNTLDAYRRDLRLFCEWLAHTRNASLDTASEADLS-----AYSAAR--QKDK 87 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S R LS + + + + L +R+ K+ P L+E Q L+ + Sbjct: 88 ATSANRRLSVFRRYYAWAVREHRAAADPTLRLRSAKQPPRFPSTLSEAQVEALLGAPDID 147 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 T + R+ +L L+Y GLR++E ++L + ++ +R+ GKG K R+VP Sbjct: 148 TP-----LGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGE 202 Query: 205 SVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 I Y + P L LF R + + F I++ + G+ + H Sbjct: 203 EAHAWIERYLREARPALLGPRAADALFVTARAEGMTRQQFWNIIKRHAQAAGVHAPLSPH 262 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 TLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V + + ++ Q HP Sbjct: 263 TLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARER----LKSLHAQHHP 314 >gi|332159818|ref|YP_004296395.1| site-specific tyrosine recombinase XerC [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607639|emb|CBY29137.1| tyrosine recombinase XerC [Yersinia enterocolitica subsp. palearctica Y11] gi|325664048|gb|ADZ40692.1| site-specific tyrosine recombinase XerC [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862565|emb|CBX72719.1| tyrosine recombinase xerC [Yersinia enterocolitica W22703] Length = 303 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 85/309 (27%), Positives = 155/309 (50%), Gaps = 17/309 (5%) Query: 11 SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70 S L + + +L+ L++ER LS LT+ SY RQ + E++ + + L + Sbjct: 5 STSLAPQVEAFLRYLKVERQLSPLTITSYR---RQLQALMEM--GEQMGLAHWQTLDAAQ 59 Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 +R+ +S+ + + SL LS ++SFL +L + + + + + LP+ ++ Sbjct: 60 VRSLVSRSKRAGLHSSSLALRLSALRSFLNWLVSQGVLQANPAKGVSTPRSGRHLPKNID 119 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 + L+D L + R+ A+L ++YG GLR+SE + + +++ + + Sbjct: 120 VDEVDKLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSEMVGMNCKHVDLASGDVWV 173 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 GKG K R VP+ + K + + +L +L +F GK ++ Q+ + Sbjct: 174 MGKGSKERKVPIGKTAVKWLEHWLELR--ELFEPQDDAIFLANTGKRISARNVQKRFAEW 231 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ H LRHSFATH+L + GDLR++Q +LGH L+TTQIYT+++ ++ + Sbjct: 232 GVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----L 287 Query: 311 MEIYDQTHP 319 +YD HP Sbjct: 288 ATVYDAAHP 296 >gi|28198560|ref|NP_778874.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa Temecula1] gi|182681239|ref|YP_001829399.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa M23] gi|73920482|sp|Q87DN0|XERD_XYLFT RecName: Full=Tyrosine recombinase xerD gi|28056644|gb|AAO28523.1| integrase/recombinase [Xylella fastidiosa Temecula1] gi|182631349|gb|ACB92125.1| tyrosine recombinase XerD [Xylella fastidiosa M23] gi|307579687|gb|ADN63656.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa subsp. fastidiosa GB514] Length = 324 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 97/307 (31%), Positives = 152/307 (49%), Gaps = 24/307 (7%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L L I+ GLS+ TL SY D L LA + + + L+ + +++ R Q Sbjct: 31 LDALWIKHGLSRHTLNSYRRD----LEGLARWNNGRAG--PLATLTPPALLDYLTWRTQQ 84 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 S R S +++F Y + ++ + + + LP+AL E Q ++ + Sbjct: 85 HYSPLSNARLRSVLRTFFSYAVECGWRNDNPSTLLAHPVLPHPLPKALTESQ----IEAL 140 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 L S ET RN A+L L+Y GLR+SE ++L + Q LRI GKG K R+VP Sbjct: 141 LAAPSIETP-EGLRNRAMLELMYAAGLRVSELVTLPVAMLNQRQGVLRITGKGGKERLVP 199 Query: 202 LLPSVRKAILEYYDLC--------PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 L + + Y + P + + +PLF K L+ F R+I+ Sbjct: 200 LGEESQHWLQRYLEQARPSLAADKPIPADSDGDVPLFINTNLKRLSRQQFWRWIKHYAAL 259 Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 +G+ P + H LRHSFATHLL++G DLR++Q +LGH +STTQIYT + ++ + + Sbjct: 260 VGIAPNKVSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYTLIARQH----LQQ 315 Query: 313 IYDQTHP 319 ++ Q HP Sbjct: 316 LHAQHHP 322 >gi|168786649|ref|ZP_02811656.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC869] gi|189373217|gb|EDU91633.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC869] Length = 298 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 91/307 (29%), Positives = 152/307 (49%), Gaps = 17/307 (5%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L + + +L+ L +ER LS +TL +Y+ RQ + F +E +Q +Q +R Sbjct: 3 DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIINFASEN--GLQNWQQCDAAMVR 57 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F + R + +G SL LS ++SF +L + + + K LP+ ++ Sbjct: 58 NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKTPRHLPKNIDVD 117 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 L+D + + R+ A+L ++YG GLR+SE + L +++ + + + G Sbjct: 118 DINRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVIG 171 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 KG K R +P+ + I + DL DL + LF GK ++ Q+ + Sbjct: 172 KGSKERRLPIGRNALSWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGI 229 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 GL H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ + Sbjct: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285 Query: 313 IYDQTHP 319 +YD HP Sbjct: 286 VYDAAHP 292 >gi|68535950|ref|YP_250655.1| integrase/recombinase [Corynebacterium jeikeium K411] gi|68263549|emb|CAI37037.1| integrase/recombinase [Corynebacterium jeikeium K411] Length = 299 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 88/299 (29%), Positives = 145/299 (48%), Gaps = 14/299 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 ++++L+ ER +S TL +Y+ D ++L++L +++T I + R+ Sbjct: 13 YIRHLKTERDVSVHTLSNYQRDLDRYLVWLGSKALQEVTATDIED-------HLVYLRKD 65 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + S R L+ I+ + +++ + S+P+AL+ Q L++ Sbjct: 66 LNLAASSAARGLAAIRGLHSFAHADGRLPFDVAVDVPTPSQGGSIPKALSLAQVEALLNA 125 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 V I+ R+ A+L +LY G RI+E L L ++ +Q L ++GKG K RIV Sbjct: 126 VP--AGDGASQINIRDRALLEMLYSTGARITELLDLDVDDLDREQRVLLVRGKGGKERIV 183 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 PL +A+ Y LN LF RG L + + Q GL Sbjct: 184 PLGRPALQAVERYLVRARPSLNKKGSPALFLNNRGARLGRQSGFKIVSQAAEAAGLE-HV 242 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H+LRHSFATHLL G D+R +Q +LGH ++TTQIYT V+ ++ + EI+ +HP Sbjct: 243 SPHSLRHSFATHLLEGGADIRVVQELLGHASVATTQIYTKVSPEH----LREIWASSHP 297 >gi|146329514|ref|YP_001210015.1| tyrosine recombinase XerD [Dichelobacter nodosus VCS1703A] gi|146232984|gb|ABQ13962.1| tyrosine recombinase XerD [Dichelobacter nodosus VCS1703A] Length = 297 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 92/292 (31%), Positives = 143/292 (48%), Gaps = 19/292 (6%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 GLS TL +Y D +Q LA + TI+ + Q+ +++ + S+ Sbjct: 21 GLSDATLSAYRGDLQQVQKILADVPLKSATIEQMMQV--------LAQFHDRGYSHTSMA 72 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 R S + F Y ++K TE+ + + K LP+ ++E LL Sbjct: 73 RMRSSLNRFFSYQIEQKERTENPMHFLGRTKIRRHLPQTMSESDV-----EALLSAPDVQ 127 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 + R+ A+L LLY CGLR+SE + LT I D ++I GKGDK R+VP + Sbjct: 128 TILGLRDRAMLELLYACGLRVSELVGLTLHQIALDVGYVQILGKGDKERLVPFGEIAHEW 187 Query: 210 ILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS-TTAHTLRH 267 + Y + P L + +F RG L+ F ++ +GL + + HTLRH Sbjct: 188 LQRYIQEARPQLLGQKMSDYVFVSQRGAALSRQAFWYRLKVYVCAVGLDSNKISPHTLRH 247 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 +FA+HLL++G DLRSIQ +LGH LSTTQIYT++ + + ++ + HP Sbjct: 248 AFASHLLAHGADLRSIQMLLGHSDLSTTQIYTHIADQR----LKSLFMKHHP 295 >gi|255532069|ref|YP_003092441.1| tyrosine recombinase XerD [Pedobacter heparinus DSM 2366] gi|255345053|gb|ACU04379.1| tyrosine recombinase XerD [Pedobacter heparinus DSM 2366] Length = 299 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 85/301 (28%), Positives = 156/301 (51%), Gaps = 23/301 (7%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L++ER LS ++++Y D + L+ Y E +++++ +++ F+S + Sbjct: 14 LKLERSLSGNSIEAYLGDLNK----LSQYFESVDQTPQVKEITGDDLKHFVSWINELGML 69 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 + R +SG+K+F +L +I T + + ++ LP L+ ++ N ++ Sbjct: 70 PSTQARVVSGLKAFFSFLMLEEIITTDPSALLESPRQVKHLPDTLSIQEI-----NGMIG 124 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 +K RN AIL LYGCGLR+SE +L ++ ++ +RI GKG+K R+VP Sbjct: 125 AIDASKPEGMRNKAILETLYGCGLRVSELSNLKISDVFEENEFIRIFGKGNKERLVP--- 181 Query: 205 SVRKAILEYYDLCPFDLNLNIQLP------LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 + + L+Y ++ + +++ + +F G L+ I+ L G+ Sbjct: 182 -IGQTALKYINIYLRESRVHVPIKKGHEDYIFLNRSGTRLSRISVFSIIKALALKSGIKK 240 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 S + HT RHSFATHL+ G DLR++Q +LGH ++TT+IYT+++ D++ I + H Sbjct: 241 SISPHTFRHSFATHLIEGGADLRAVQEMLGHSSITTTEIYTHLDR----DYLRGIITEFH 296 Query: 319 P 319 P Sbjct: 297 P 297 >gi|149202773|ref|ZP_01879745.1| tyrosine recombinase XerD [Roseovarius sp. TM1035] gi|149144055|gb|EDM32089.1| tyrosine recombinase XerD [Roseovarius sp. TM1035] Length = 323 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 87/295 (29%), Positives = 145/295 (49%), Gaps = 28/295 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ E G +K TL +Y D + F ++ + + +QT+ Q F Sbjct: 11 FLEAQAAELGAAKNTLLAYARDLKDFSEWV---ENQGLALQTLTQPDIDRYLVFCD---A 64 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q + + R LS I+ ++ ++ ++ + ++ K+ LP+ L+E++ L+D Sbjct: 65 QGLARATRARRLSAIRQLYRFAFDERLRADNPAIRIKGPGKAQRLPKTLSEEEVSRLLDM 124 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 H T +RN+ ++ LLY G+R+SE +SL D + ++GKG K R+V Sbjct: 125 APAHG--RTASERSRNACLVALLYATGMRVSELVSLPLGAARGDPRMILVRGKGGKERMV 182 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP---LNPGVFQRYIRQLRRYLGL- 256 PL P R A+ ++ L D + + +G++ P + G R R+ L Sbjct: 183 PLSPPARAALSDW--LAIRDAEESARRA--KGVQSSPYLFASGGASGHLTRH--RFYNLI 236 Query: 257 ----------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 P T HTLRH+FATHLL+NG DLR IQ++LGH ++TT+IYT+V Sbjct: 237 KEISVKAHVDPDKVTPHTLRHAFATHLLANGADLRVIQTLLGHADVATTEIYTHV 291 >gi|167036277|ref|YP_001671508.1| site-specific tyrosine recombinase XerC [Pseudomonas putida GB-1] gi|189030081|sp|B0KQ43|XERC_PSEPG RecName: Full=Tyrosine recombinase xerC gi|166862765|gb|ABZ01173.1| tyrosine recombinase XerC [Pseudomonas putida GB-1] Length = 299 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 92/310 (29%), Positives = 152/310 (49%), Gaps = 29/310 (9%) Query: 17 ERQ--NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 ERQ + +L ER +S+ TL Y D + + A+ E I + L ++R Sbjct: 2 ERQLEAYCAHLRNERQVSEHTLLGYRRDLDKVI---AYCKEHGIA--DWQALQIQQLRQL 56 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 I++ RSL R LS ++ +YL + + + K LP+ L+ +A Sbjct: 57 IARLHHHGQSSRSLARLLSAVRGLYRYLNREGLCQHDPATGLSAPKGERRLPKVLDTDRA 116 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 L L+D + + +I R+ AIL L Y GLR+SE +L ++ +++ GKG Sbjct: 117 LQLLDGGV-----DDDFIARRDQAILELFYSSGLRLSELTNLDLDHLDLAAGLVQVLGKG 171 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI----RGKPLNPGVFQRYIRQL 250 K R++P+ R+A+ +Y L I P R + +G ++P + ++ Sbjct: 172 GKARVLPVGRKAREALQAWYRL------RGIGNPRDRAVFITRQGNRISPQAVRLRVKAA 225 Query: 251 -RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 R LG L H LRHSFA+H+L + DLR++Q +LGH +STTQIYT+++ ++ Sbjct: 226 GERELGQHLHP--HMLRHSFASHVLESSQDLRAVQELLGHADISTTQIYTHLDFQH---- 279 Query: 310 MMEIYDQTHP 319 + +YD HP Sbjct: 280 LAAVYDSAHP 289 >gi|310821627|ref|YP_003953985.1| Tyrosine recombinase XerD [Stigmatella aurantiaca DW4/3-1] gi|309394699|gb|ADO72158.1| Tyrosine recombinase XerD [Stigmatella aurantiaca DW4/3-1] Length = 310 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 96/309 (31%), Positives = 148/309 (47%), Gaps = 31/309 (10%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE--KITIQTIRQLSYTEIRAFISK 77 ++ + ERGLS T+ +Y D L Y E+ + + ++ ++ A + + Sbjct: 7 TFIAFIRAERGLSGKTVDAYAAD-------LTVYFEDLRARGVLDVARVKQEDVTAHLMQ 59 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 + + RS R L+ ++ F ++L K + ++ + + LP L L Sbjct: 60 LGARGLSKRSQARHLAAVRGFHRFLIAEKHAEKDPTEDLDTPRSARKLPSFLT----LEE 115 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 V+ LL E R+ A+L LLY GLR+SE SL ++ L +GKG K Sbjct: 116 VEQ-LLAAPDERHPTGMRDKAMLELLYATGLRVSELCSLGINDVQLGAGYLVAKGKGSKE 174 Query: 198 RIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQR--YIRQLRRY 253 R+VP+ SV ++ Y P L LF RG G F R + + L+RY Sbjct: 175 RVVPV-GSVAVEKVQAYLGGPRQHLLGKRQSRSLFITPRG-----GAFTRQGFWKLLKRY 228 Query: 254 L---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ + H LRHSFATHL+ G DLR++Q++LGH L+TTQIYT+VNS + Sbjct: 229 ALKAGIRKPISPHKLRHSFATHLVERGADLRAVQAMLGHADLATTQIYTHVNSAR----L 284 Query: 311 MEIYDQTHP 319 +YD+ HP Sbjct: 285 RAVYDEHHP 293 >gi|257063755|ref|YP_003143427.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM 20476] gi|256791408|gb|ACV22078.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM 20476] Length = 313 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 75/256 (29%), Positives = 122/256 (47%), Gaps = 9/256 (3%) Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 +++Y ++R ++ + + +++ R LS IK +++ + + ++ K + Sbjct: 64 RITYRQVRRYLGELTQAQYSRKTINRRLSAIKGLFRWMNLTGVIDSDPVSVIQGPKSAKG 123 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 LPR + + +L D RN AIL LY CG RISEA L ++ D Sbjct: 124 LPRMIPASD----MGRILTVYKDSDDPADMRNQAILEFLYACGARISEASGLMLADVDFD 179 Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 +++ GKG K RI+PL K + Y + P L F RG + P Sbjct: 180 AKQVKVFGKGSKERIIPLHDMAVKTMKSYAWRARPVLLKGKPNEFFFVSTRGNRMGPDAM 239 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 ++ + G+ S T H +RH+FAT L+ G DL+S+Q +LGH LSTTQIYT+++ Sbjct: 240 RKMFKNTLIMAGVDTSYTPHDMRHTFATDLVEGGADLKSVQEMLGHESLSTTQIYTHLSV 299 Query: 304 KNGGDWMMEIYDQTHP 319 D + + Q HP Sbjct: 300 ----DHLKQAVHQAHP 311 >gi|123443576|ref|YP_001007549.1| site-specific tyrosine recombinase XerD [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090537|emb|CAL13406.1| integrase/recombinase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 299 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 90/303 (29%), Positives = 152/303 (50%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ER L++ TL SY D +L + + + + ++++F+++R Sbjct: 10 EQFLDALWLERNLAENTLASYRLDLHALSGWLEHHDSDLLRAGS------QDLQSFLAER 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K+ + + + K LP+ L+E Q Sbjct: 64 IEGGYKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQV---- 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL++ + ++ R+ A+L +LY GLR+SE + LT ++ Q +R+ GKG+K R Sbjct: 120 -EALLNSPNVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKER 178 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL I Y + P+ +N LF R + + F I+ G+ Sbjct: 179 LVPLGEEAVYWIENYMEHGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGID 238 Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + ++ Q Sbjct: 239 SERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LKLLHQQ 294 Query: 317 THP 319 HP Sbjct: 295 HHP 297 >gi|313837516|gb|EFS75230.1| tyrosine recombinase XerD [Propionibacterium acnes HL037PA2] gi|314927276|gb|EFS91107.1| tyrosine recombinase XerD [Propionibacterium acnes HL044PA1] gi|314972722|gb|EFT16819.1| tyrosine recombinase XerD [Propionibacterium acnes HL037PA3] gi|328907874|gb|EGG27637.1| site-specific tyrosine recombinase XerD [Propionibacterium sp. P08] Length = 306 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 94/311 (30%), Positives = 161/311 (51%), Gaps = 27/311 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L++L +ERGLS T+Q+Y D ++ +L + I+++ +++ ++ F +R Sbjct: 10 EDYLRHLVVERGLSDNTVQAYRRDLLRYQKYL-----DSRGIRSLAEVTRVDVEEF--RR 62 Query: 79 RTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 ++G S+ R + +++ + + + +S LP+AL +Q Sbjct: 63 YLDQLGLAPASVTRCVVAVRNLHHFAVESGQAKTDVTAGISPGTRSRRLPKALTMEQVEA 122 Query: 137 LVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNI---MDDQS-TLRIQ 191 L+ + +T ++ R++A+L LLYG G R+SE +L +I +DD LR+ Sbjct: 123 LL------AAPDTSTVEGLRDTALLELLYGTGARVSEVCALDVDDIRPVLDDPDLGLRLI 176 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQ 249 GKGDK RIVPL +A+ + P L N + L RG+ L+ IR+ Sbjct: 177 GKGDKERIVPLGSYAAQAVDAWLVRGRPAWAQLGNGEHALLLNTRGRRLSRQSAWTVIRR 236 Query: 250 LRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 GL + + H+LRHS+ATHLL G D+R +Q +LGH ++TTQIYT V + D Sbjct: 237 AGEAAGLDVEHLSPHSLRHSYATHLLDGGADIRVVQELLGHSSVTTTQIYTLVTA----D 292 Query: 309 WMMEIYDQTHP 319 + E+Y +HP Sbjct: 293 HLREVYRSSHP 303 >gi|238918092|ref|YP_002931606.1| site-specific tyrosine recombinase XerC [Edwardsiella ictaluri 93-146] gi|238867660|gb|ACR67371.1| tyrosine recombinase XerC, putative [Edwardsiella ictaluri 93-146] Length = 300 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 94/315 (29%), Positives = 153/315 (48%), Gaps = 23/315 (7%) Query: 6 LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65 +PE +S ++ +LQ + +ER LS T+++Y RQ +A E + T Sbjct: 1 MPESLSTPVVA----FLQMMRVERQLSPRTVETYR---RQLAASVALLLEGGLCDWTA-- 51 Query: 66 LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 L +R+ +++ R Q + SL LS ++SFL + R T + + ++ L Sbjct: 52 LDTVRVRSLVARSRRQGLEPASLALRLSALRSFLDWQVSRGALTANPAKGVSAPRQGRHL 111 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 P+ L+ L+D E + R+ A+L ++YG GLR+SE + L ++ Sbjct: 112 PKNLDVDDVNRLLD------IDEGDTLAVRDRAMLEVMYGGGLRLSELVGLDCRHADLTT 165 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQ 244 + + GKG K R LP R+A+ L+L Q LF G ++P Q Sbjct: 166 GEVWVLGKGSKER---RLPVGREAVRWLQKWLSLRLSLQPQDDALFVSRLGGRISPRSVQ 222 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + + G+ H LRHSFATH+L + GDLR++Q +LGH LSTTQIYT+++ + Sbjct: 223 KRFAEWGVKQGVTSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQ 282 Query: 305 NGGDWMMEIYDQTHP 319 + + +YD HP Sbjct: 283 H----LATVYDAAHP 293 >gi|28378545|ref|NP_785437.1| integrase/recombinase [Lactobacillus plantarum WCFS1] gi|254556759|ref|YP_003063176.1| integrase/recombinase [Lactobacillus plantarum JDM1] gi|308180702|ref|YP_003924830.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum ST-III] gi|28271381|emb|CAD64286.1| integrase/recombinase [Lactobacillus plantarum WCFS1] gi|254045686|gb|ACT62479.1| integrase/recombinase [Lactobacillus plantarum JDM1] gi|308046193|gb|ADN98736.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 296 Score = 119 bits (298), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 93/307 (30%), Positives = 154/307 (50%), Gaps = 26/307 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT----IQTIRQLSYTEIRAFI 75 ++L L +ERGL + T++SY D F +L ++IT + L+Y + Sbjct: 7 DYLHFLRVERGLVENTIKSYSQDLTTFSEYL---MSQQITDYRVVDRYVLLNYLQYLDEA 63 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 K R I S+S ++ F +YL + +L + K++ LP+ L+ ++ Sbjct: 64 GKSRNTII------HSVSSLRKFFQYLAQMHAIDTDPMLKIDTPKRAQHLPQVLSPREVE 117 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L+ L+T + R+ +L ++Y GLR+SE ++LT ++ D ++ GKGD Sbjct: 118 RLLAVPKLNTP-----LGLRDRTLLEVMYATGLRVSETINLTMDDLHLDLGLIQTIGKGD 172 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR---GKPLNPGVFQRYIRQLRR 252 K RI+P+ I Y L + + I GK GV++ +++ Sbjct: 173 KERIIPIGDVAIDFITRYLKTARPKLVSAKRRNSYLFINNHGGKLSRQGVWKNLKAEVKA 232 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 G+ + T HTLRHSFATH+L NG DLR +Q +LGH +STTQIYT+++ K + E Sbjct: 233 -AGIEKNVTPHTLRHSFATHILENGADLRVVQELLGHADISTTQIYTHISKKR----LAE 287 Query: 313 IYDQTHP 319 +Y++ HP Sbjct: 288 VYNKYHP 294 >gi|184201180|ref|YP_001855387.1| tyrosine recombinase XerD [Kocuria rhizophila DC2201] gi|183581410|dbj|BAG29881.1| tyrosine recombinase XerD [Kocuria rhizophila DC2201] Length = 304 Score = 119 bits (298), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 94/311 (30%), Positives = 153/311 (49%), Gaps = 25/311 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +L +ERGL+ T+ +Y D ++L L T ++ R ++ +RAF+ + R Sbjct: 4 YLDHLVVERGLAANTVSAYRRDLARYLQHL---TATAAHVRVPRDITADHVRAFVRRIRE 60 Query: 81 -----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNEKQA 134 + RS R L+ ++ + TES++ + S +P + L + Sbjct: 61 GDAAHPALSARSSARVLAAVRGAHAFW-----VTESSVDTDVASRVSPPMPPQRLPKAIG 115 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM----DDQSTLRI 190 +T V+N+L +T R A L LLY G RISEA++L ++ +D + +R+ Sbjct: 116 VTEVENLLAAPDPDTP-AGLRARAFLELLYATGARISEAVALDVDDLAGLHDEDLALIRV 174 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIR 248 GKG K R+VP+ A+ Y +L + + +F RG ++ ++ Sbjct: 175 TGKGAKQRLVPVGSFAVAALDRYLIRARPELARHGRGSPAVFLNARGTRISRQTAWNMVK 234 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 R + T HTLRHSFATHLL G DLR +Q +LGH L+TTQIYT V+ ++ Sbjct: 235 DAARTIHQEERITPHTLRHSFATHLLEGGADLRVVQELLGHASLATTQIYTRVSVES--- 291 Query: 309 WMMEIYDQTHP 319 + E+Y +HP Sbjct: 292 -LREVYATSHP 301 >gi|148550339|ref|YP_001270441.1| site-specific tyrosine recombinase XerC [Pseudomonas putida F1] gi|166918895|sp|A5WAU7|XERC_PSEP1 RecName: Full=Tyrosine recombinase xerC gi|148514397|gb|ABQ81257.1| tyrosine recombinase XerC subunit [Pseudomonas putida F1] Length = 299 Score = 119 bits (298), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 89/306 (29%), Positives = 150/306 (49%), Gaps = 27/306 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + +L ER +S+ TL Y D + + A+ E I + L ++R I++ Sbjct: 6 EAYCAHLRNERQVSEHTLLGYRRDLEKVI---AYCKEHGIA--EWQALQIQQLRQLIARL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 RSL R LS ++ +YL + + + K LP+ L+ +AL L+ Sbjct: 61 HHHGQSPRSLARLLSAVRGLYRYLNREGLCQHDPATGLSAPKGERRLPKVLDTDRALQLL 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + + +I R+ AIL L Y GLR+SE +L ++ +++ GKG K R Sbjct: 121 DGGV-----DDDFIARRDQAILELFYSSGLRLSELTNLDLDHLDLAAGLVQVLGKGGKAR 175 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI----RGKPLNPGVFQRYIRQL-RRY 253 ++P+ R+A+ +Y L I P R + +G ++P + ++ R Sbjct: 176 VLPVGRKAREALQAWYRL------RGIGNPRDRAVFITRQGNRISPQAVRLRVKAAGERE 229 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 LG L H LRHSFA+H+L + DLR++Q +LGH +STTQIYT+++ ++ + + Sbjct: 230 LGQHLHP--HMLRHSFASHVLESSQDLRAVQEMLGHADISTTQIYTHLDFQH----LAAV 283 Query: 314 YDQTHP 319 YD HP Sbjct: 284 YDSAHP 289 >gi|188994249|ref|YP_001928501.1| putative integrase/recombinase XerD [Porphyromonas gingivalis ATCC 33277] gi|188593929|dbj|BAG32904.1| putative integrase/recombinase XerD [Porphyromonas gingivalis ATCC 33277] Length = 308 Score = 119 bits (298), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 82/253 (32%), Positives = 132/253 (52%), Gaps = 9/253 (3%) Query: 51 AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE 110 ++ T E I+ R++SY ++ F+++ I RS+ R +SG+KSF ++L + Sbjct: 37 SYLTAENISF---REVSYENLQHFVAELYDLGISARSIARIISGVKSFFRFLVLEEYIEA 93 Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170 + + LP L ++ L+ + RN AIL +LY CGLR+ Sbjct: 94 DPTELLEGPRIGVHLPTVLTIEEVDRLIGAI-----DPAAQGAQRNRAILEILYSCGLRV 148 Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPL 229 SE SL N+ ++S LRI GKG K R+VP+ + + Y D L + + Sbjct: 149 SELTSLKFSNLFLNESFLRIDGKGRKQRLVPMSETAITELKRYLSDPERPTPVLGQEEYV 208 Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289 F RGK ++ + I++L G+ S + HT RHSFATHLL G +L++IQ +LGH Sbjct: 209 FLSNRGKAISRIMVFVMIKKLAEEAGITKSISPHTFRHSFATHLLEGGANLQAIQLMLGH 268 Query: 290 FRLSTTQIYTNVN 302 ++TT+IYT+++ Sbjct: 269 ENIATTEIYTHID 281 >gi|294791010|ref|ZP_06756168.1| putative tyrosine recombinase XerC [Scardovia inopinata F0304] gi|294458907|gb|EFG27260.1| putative tyrosine recombinase XerC [Scardovia inopinata F0304] Length = 322 Score = 119 bits (298), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 90/313 (28%), Positives = 153/313 (48%), Gaps = 33/313 (10%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 E LK +++L +GLS+ T +Y D Q L FL+ + +I +++ +R Sbjct: 5 EKLKAYEDFLAE---NQGLSQHTRTAYRGDVDQCLHFLSLRG-----VDSIEKVNTDLLR 56 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 +++ ++++ SL R + ++ F Y ++ ++ + +LP L +K Sbjct: 57 MWMAYE-SRRLAKSSLARKIVAVRGFFAYTYVHGLSHSDPAADLGTPRLPQTLPSVLTKK 115 Query: 133 QALTLVDNV--LLHTSHETK----WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 QA L+D + T + + ID RN AI+ LLY G+R++E + L +I Sbjct: 116 QASALMDKAEEVYQTDRKEQSGRTAIDLRNDAIVELLYATGIRVAELVGLNTGDIDFSSR 175 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---------------NLNIQ--LPL 229 T+++ GKG+K R+VP A+ E+ + L N + Q + Sbjct: 176 TVKVTGKGNKQRVVPFGAPASHALQEWLNRGRPSLVRKNSADGSSAGSKKNEDRQDSEAV 235 Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289 F G RG +N ++ + +L G+P + H+LRHS ATHLL G DLR +Q +LGH Sbjct: 236 FVGSRGGRINQRQVRQVVHRLAAEAGVP-DISPHSLRHSAATHLLDGGADLREVQEMLGH 294 Query: 290 FRLSTTQIYTNVN 302 L+TTQ YT+V+ Sbjct: 295 SSLATTQRYTHVS 307 >gi|307293405|ref|ZP_07573251.1| integrase family protein [Sphingobium chlorophenolicum L-1] gi|306881471|gb|EFN12687.1| integrase family protein [Sphingobium chlorophenolicum L-1] Length = 305 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 90/311 (28%), Positives = 156/311 (50%), Gaps = 32/311 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECD---TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 +L+ + ERG S+ TL +Y D + + L+ T+++I T +++ E+ A Sbjct: 11 FLEMMAAERGASRNTLLAYRADLTGAGEIVGGLSGATKDRIADLT---MAWAELAA---- 63 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 S+ R S +++F +L++ + ++ + SLP+ L+ ++ +L Sbjct: 64 --------SSVARKSSALRAFYAFLEEEGLRPDNPSAALPRPVTRRSLPKILSTQEVDSL 115 Query: 138 VDNVL--LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 + L H + +D R SA++ LLYG GLR +E +SL + + D+ L ++GKG Sbjct: 116 FALIAGKLAVEHPSP-LDLRLSALIELLYGSGLRATELVSLPRRALASDRPFLILKGKGG 174 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 + R+VP+ R A+ + P D L LF + ++Q Sbjct: 175 RERLVPISDRARAAVAVWLHHVPAD-----SLWLFPSGKSHVSRIRLYQMVKALAAAAGI 229 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 P + H LRH+FATHLL G DLR++QS+LGH + TTQIYT+V+S+ ++E+ + Sbjct: 230 APERVSPHVLRHAFATHLLEGGADLRALQSMLGHADIGTTQIYTHVDSRR----LVELVN 285 Query: 316 QTHP--SITQK 324 HP S+T + Sbjct: 286 SRHPLASMTHR 296 >gi|313836787|gb|EFS74501.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL037PA2] gi|314929805|gb|EFS93636.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL044PA1] gi|314972234|gb|EFT16331.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL037PA3] Length = 315 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 77/285 (27%), Positives = 131/285 (45%), Gaps = 9/285 (3%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T++ Y D F+ + ++ + ++ +++RA+++ R +++R S Sbjct: 38 TIRGYRADLIDFMGHAHSHGDDALG-----KIGTSQVRAWLADTRLAGASPATMQRRWSA 92 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + F ++ + + + LP L QA ++D + + A Sbjct: 93 ARVFFRWAANEGLIDCDPTAALTSANVPKRLPATLGVDQARHILDGAVAQARSDETPQGA 152 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R++AIL +LYG GLR+ E L ++ + T+ + GKGDK R VP+ AI + Sbjct: 153 RDAAILEVLYGGGLRVGELCGLDLGDVDRSRQTVIVTGKGDKERTVPMGTPALHAIDTWL 212 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 + LF G RG ++ V +R + R H LRH+ ATHLL Sbjct: 213 PRRAEWAGPDSGQALFLGARGGRIDQRVVRRVVHAHMRSEPDSPDLGPHGLRHAMATHLL 272 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 G DLR++Q ILGH L+TTQIYT+V+++ + + Q HP Sbjct: 273 EGGADLRTVQDILGHESLATTQIYTHVSTER----LRTAFRQAHP 313 >gi|262198804|ref|YP_003270013.1| tyrosine recombinase XerD [Haliangium ochraceum DSM 14365] gi|262082151|gb|ACY18120.1| tyrosine recombinase XerD [Haliangium ochraceum DSM 14365] Length = 299 Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 92/300 (30%), Positives = 150/300 (50%), Gaps = 17/300 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 + Q+L++ER LS T++ Y D + FLA I + ++R + ++ Sbjct: 14 YFQHLKVERNLSVHTIEGYSRDLARLRRFLA--ERACIAVASVRPADLADYLLALA---- 67 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 ++G RS R+ + I+ + ++L + ++ + LP + E QA+T Sbjct: 68 DELGARSRARASAAIRGWFRFLVSERYLERDPAEHLATPRALRPLPVVIGE-QAVT---- 122 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LL T R+ A++ LY GLR+SE + L ++ D LR+ GKG K R+V Sbjct: 123 ELLAAPPTTTPRGLRDGAMIETLYATGLRVSELVGLLMADVHLDPGYLRVLGKGRKQRLV 182 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 PL I Y N + P LF GKP+ F + +++ R +G+ Sbjct: 183 PLGEMACARIEAYVSGARGSFLKNPKQPALFLTGHGKPMTRQGFWKLLKRYARGVGIA-E 241 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H LRHSFATHLL +G DLR++Q++LGH +STTQIYT+V+ ++ +Y++ HP Sbjct: 242 ISPHKLRHSFATHLLEHGADLRAVQAMLGHADISTTQIYTHVSRAR----LVALYEKHHP 297 >gi|255262389|ref|ZP_05341731.1| tyrosine recombinase XerD [Thalassiobium sp. R2A62] gi|255104724|gb|EET47398.1| tyrosine recombinase XerD [Thalassiobium sp. R2A62] Length = 310 Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 80/233 (34%), Positives = 124/233 (53%), Gaps = 16/233 (6%) Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q + + R LS +K ++ + ++ + ++ K LP+ L+ ++ VD Sbjct: 65 AQGLAKSTRARRLSAVKQLYRFAFEESWRADNPAIQIKGPGKDKRLPKTLSVEE----VD 120 Query: 140 NVLLHTSHETKWIDAR--NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 +L + K +D R N+ ++ LLY G+R++E +SL D L I+GKGDK Sbjct: 121 RLLEASRTSAKSVDDRLRNTCLMELLYATGMRVTELVSLPVSATRGDPRMLLIRGKGDKE 180 Query: 198 RIVPLLPSVRKAILEY---YDLCPFDLNLNIQLPLFRGI---RGKP--LNPGVFQRYIRQ 249 R+VPL P R A+ ++ +D D + P R + RGK L F I++ Sbjct: 181 RMVPLSPPARTALADWIKRWDALQ-DAAVKAGKPRARHLFPSRGKDGHLTRHRFYLMIKE 239 Query: 250 LRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G+ P T HTLRH+FATHLL+NG DLRSIQ++LGH ++TT+IYT+V Sbjct: 240 FAVAGGVVPSKVTPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHV 292 >gi|239906838|ref|YP_002953579.1| tyrosine recombinase XerD [Desulfovibrio magneticus RS-1] gi|239796704|dbj|BAH75693.1| tyrosine recombinase XerD [Desulfovibrio magneticus RS-1] Length = 285 Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 95/315 (30%), Positives = 148/315 (46%), Gaps = 46/315 (14%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTE--EKITIQTIRQLSYTEIRAFISKRRTQKIG 84 + RGLS+ ++ +Y D FLIFL + E T +T+ ++ R++ + Sbjct: 1 MARGLSEHSIAAYSTDIVGFLIFLNDHGAALEATTDETVLL--------YLMHLRSRGLA 52 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 RSL R LS ++ F + + S + N K LP L+ ++ L+D Sbjct: 53 SRSLARHLSALRGFFAFAADESWLSASPAALIENPKLPRLLPDVLSREEVTRLLDAPDTA 112 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 T + R+ +L LLY GLR+SE + LT + LR+ GKG K R+ P Sbjct: 113 TP-----LGYRDRTMLELLYAAGLRVSELVGLTLADFDAQAGLLRVFGKGSKERVTP--- 164 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----------QRYIRQLRRY- 253 + +E+ L+ L RG G P + VF Q + ++RY Sbjct: 165 -IHSLAMEF---------LSTYLSSIRGAFG-PKDQHVFLNRSGKGLTRQAVWKGIKRYA 213 Query: 254 LGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 L +ST + H+LRHSFATHLL G DLR++Q +LGH +S T+IYT+V + ++ Sbjct: 214 LAAQVSTRISPHSLRHSFATHLLDGGADLRTVQMLLGHADISATEIYTHVQAGR----LL 269 Query: 312 EIYDQTHPSITQKDK 326 ++ HP +DK Sbjct: 270 AVHRAHHPRSRDRDK 284 >gi|212550782|ref|YP_002309099.1| site-specific recombinase XerC [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549020|dbj|BAG83688.1| site-specific recombinase XerC [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 299 Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 87/300 (29%), Positives = 154/300 (51%), Gaps = 16/300 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +L ER S TL++Y D QF F+ + E ++TI + + IR +I Sbjct: 13 FLCHLRYERNYSVRTLKTYCDDLVQFERFV--FCSEGFDMRTI---TSSVIREWIVFLMD 67 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS+ R LS ++SF +YL + + + + ++ LP + +++ TL Sbjct: 68 RNYSPRSVNRKLSTLRSFFRYLYRNGQIESNPVKGIVGVRTGRPLPYFVRDREMNTL--- 124 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LL S + D R+ IL + Y G+R SE + L ++I + +R+ GKG+K R++ Sbjct: 125 -LLDLSKGEGFEDERDRTILEVFYSTGIRCSELVGLNDEDIDFESCLIRVTGKGNKQRLI 183 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ-LRRYLGLPLS 259 P ++ + IL YY + ++ F G+ LN + R +++ L LP Sbjct: 184 PFSKTL-EEILSYYKTIRDETIWDVSKAFFVREDGRSLNYNIVYRIVKKRLSDIPNLP-K 241 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H LRH+FAT +L+NG +L +++ +LGH L++T+IYT++ + + + Y Q HP Sbjct: 242 RSPHVLRHTFATSMLNNGANLNAVKELLGHSSLASTEIYTHLTFEE----LKKTYKQAHP 297 >gi|256379436|ref|YP_003103096.1| tyrosine recombinase XerD [Actinosynnema mirum DSM 43827] gi|255923739|gb|ACU39250.1| tyrosine recombinase XerD [Actinosynnema mirum DSM 43827] Length = 299 Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 87/302 (28%), Positives = 140/302 (46%), Gaps = 16/302 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +L +ERG ++ TL SY D R++L L + + + + + F++ R Sbjct: 13 YLDHLAVERGAARNTLDSYARDLRRYLAHL---ESAGLGLDAVTEAVVGD---FLAGLRE 66 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + S R+L ++ ++ + +T +++ LP+AL L L+D Sbjct: 67 SGLAASSAARTLVAVRGLHRFAHREGLTAADPAKDVQPPAAPRRLPKALPVADVLRLLD- 125 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 T+ +T R+ A+L LLY G RISE + L ++ + T + GKG K R+V Sbjct: 126 ----TAGDTPAA-LRDRALLELLYSTGARISEVVGLDVDDVDAAERTALLDGKGGKQRVV 180 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 P+ A+ Y L LF RG L+ + ++ G+ Sbjct: 181 PVGRPALAAVEAYLVRARPVLAKRGGPALFLNARGGRLSRQSAWQVLKTAAERAGVAAEV 240 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 + HTLRHSFATHLL G D+R +Q +LGH ++TTQ+YT V + E+Y HP Sbjct: 241 SPHTLRHSFATHLLEAGADVRVVQELLGHASVTTTQVYTLVTVTT----LREVYATAHPR 296 Query: 321 IT 322 T Sbjct: 297 AT 298 >gi|197262705|ref|ZP_03162779.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197240960|gb|EDY23580.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 300 Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 91/311 (29%), Positives = 153/311 (49%), Gaps = 17/311 (5%) Query: 9 IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68 + L ++ +L+ L +ER LS +TL +Y+ RQ +A E +++ +Q Sbjct: 1 MTDVALSQDVSRFLRYLGVERQLSPITLLNYQ---RQLDAIIALAGE--TGLKSWQQCDA 55 Query: 69 TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 +R+F + R + +G SL LS ++SF +L + + + K LP+ Sbjct: 56 AIVRSFAVRSRRKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKN 115 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 ++ L+D L + R+ A+L ++YG GLR+SE + L +++ D + Sbjct: 116 IDVDDVNRLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEV 169 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 + GKG K R +P+ + I + DL L + + LF GK ++ Q+ Sbjct: 170 WVMGKGSKERRLPIGRNAVTWIEHWLDLR--GLFASDEEALFLSKLGKRISVRNVQKRFA 227 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 + GL H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ Sbjct: 228 EWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH--- 284 Query: 309 WMMEIYDQTHP 319 + +YD HP Sbjct: 285 -LASVYDAAHP 294 >gi|328907661|gb|EGG27425.1| site-specific tyrosine recombinase XerC [Propionibacterium sp. P08] Length = 310 Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 77/285 (27%), Positives = 131/285 (45%), Gaps = 9/285 (3%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T++ Y D F+ + ++ + ++ +++RA+++ R +++R S Sbjct: 33 TIRGYRADLIDFMGHAHSHGDDALG-----KIGTSQVRAWLADTRLAGASPATMQRRWSA 87 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + F ++ + + + LP L QA ++D + + A Sbjct: 88 ARVFFRWAANEGLIDCDPTAALTSANVPKRLPATLGVDQARHILDGAVAQARSDETPQGA 147 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R++AIL +LYG GLR+ E L ++ + T+ + GKGDK R VP+ AI + Sbjct: 148 RDAAILEVLYGGGLRVGELCGLDLGDVDRSRQTVIVTGKGDKERTVPMGTPALHAIDTWL 207 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 + LF G RG ++ V +R + R H LRH+ ATHLL Sbjct: 208 PRRAEWAGPDSGQALFLGARGGRIDQRVVRRVVHAHMRSEPDSPDLGPHGLRHAMATHLL 267 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 G DLR++Q ILGH L+TTQIYT+V+++ + + Q HP Sbjct: 268 EGGADLRTVQDILGHESLATTQIYTHVSTER----LRTAFRQAHP 308 >gi|313901986|ref|ZP_07835402.1| integrase family protein [Thermaerobacter subterraneus DSM 13965] gi|313467775|gb|EFR63273.1| integrase family protein [Thermaerobacter subterraneus DSM 13965] Length = 380 Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 93/317 (29%), Positives = 148/317 (46%), Gaps = 36/317 (11%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L +L +ERGLS T+++Y D +L FL E + + +S ++R +++ Sbjct: 27 EAYLDHLRLERGLSPRTVEAYAGDLAGWLQFLGL--EPPVGAAALAGVSGRDLRRWLAHL 84 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + S+ R L+ ++ +Y + S + + LPR ++A L+ Sbjct: 85 EERGLARASVARKLAAVRGLFRYAVREGWLAASPAARLATPRLRRRLPRVYTPEEAQALL 144 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + + H + R+ AIL LLYGCGLR++E L ++ + LR+ GKG K R Sbjct: 145 EAAA--SGHGPAAL--RDRAILELLYGCGLRVAELSGLDLDDVDLEGGWLRVYGKGGKER 200 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF-RGIRGKPLNPGVFQ------------- 244 I+PL V A+ Y L P F G R +P P Q Sbjct: 201 ILPLAGPVAAALRAY---------LEEGRPGFLEGRRHRPCRPADAQAVFLNRWGGRLSP 251 Query: 245 RYIRQLRRYLGLP---LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 R I+ + R +G L H LRH+FATHLL G LR++Q +LGH L+ TQ+YT+V Sbjct: 252 RGIQAIVRRVGAVVARLQAHPHLLRHTFATHLLDGGAGLRAVQELLGHASLAATQVYTHV 311 Query: 302 NSKNGGDWMMEIYDQTH 318 + + +Y Q H Sbjct: 312 SRAR----LWAVYQQAH 324 >gi|218282387|ref|ZP_03488669.1| hypothetical protein EUBIFOR_01251 [Eubacterium biforme DSM 3989] gi|218216673|gb|EEC90211.1| hypothetical protein EUBIFOR_01251 [Eubacterium biforme DSM 3989] Length = 300 Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 95/312 (30%), Positives = 144/312 (46%), Gaps = 18/312 (5%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 EL +++ L + + SK T+QSY D ++L F + KI+ +S +I Sbjct: 2 ELKDAFEDYHLYLSVVQRKSKKTVQSYLHDID---VYLDFLKDRKIS--KCENISVLDIE 56 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 AF+ + SL R ++ I SF + + L + +K S LP L+ Sbjct: 57 AFLDFYAEDHVA-SSLNRMIASIHSFHLQISTMHPEIKDVSLLIHGMKSSKHLPVYLS-- 113 Query: 133 QALTLVDNVL-LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 VD V + +S + ID N IL +LY CGLR+SE L ++ + L+++ Sbjct: 114 -----VDEVKKVFSSFQDNEIDQYNKTILVVLYSCGLRVSELCDLKLNDVHLTEQILKVK 168 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 GKGDK RI+P+ + Y D F ++ F G I+Q Sbjct: 169 GKGDKERIIPISSYCVSQMKYYLDSIRFVWDVKNVSYFFVNRLGHICTRQYVHLMIKQKV 228 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 L L +AH+ RHSFATHLL DLR +Q +LGH +STTQIYT++ K + Sbjct: 229 NELNLNPKISAHSFRHSFATHLLDGDADLRIVQELLGHSNISTTQIYTHIQDKR----LS 284 Query: 312 EIYDQTHPSITQ 323 +YD+ I + Sbjct: 285 SVYDRCFQKIEK 296 >gi|260578657|ref|ZP_05846565.1| integrase/recombinase XerD [Corynebacterium jeikeium ATCC 43734] gi|258603154|gb|EEW16423.1| integrase/recombinase XerD [Corynebacterium jeikeium ATCC 43734] Length = 299 Score = 119 bits (297), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 88/299 (29%), Positives = 144/299 (48%), Gaps = 14/299 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 ++++L+ ER +S TL +Y+ D ++L++L +++T I + R+ Sbjct: 13 YIRHLKTERDVSVHTLSNYQRDLDRYLVWLGSKALQEVTATDIED-------HLVYLRKD 65 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + S R L+ I+ + ++ + S+P+AL+ Q L++ Sbjct: 66 LNLAASSAARGLAAIRGLHSFAHTDGRLAFDVAADVPTPSQGGSIPKALSLAQVEALLNA 125 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 V I+ R+ A+L +LY G RI+E L L ++ +Q L ++GKG K RIV Sbjct: 126 VP--AGDGASQINIRDRALLEMLYSTGARITELLDLDVDDLDREQRVLLVRGKGGKERIV 183 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 PL +A+ Y LN LF RG L + + Q GL Sbjct: 184 PLGRPALQAVERYLVRARPSLNKKGSPALFLNNRGARLGRQSGFKIVSQAAEAAGLE-HV 242 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H+LRHSFATHLL G D+R +Q +LGH ++TTQIYT V+ ++ + EI+ +HP Sbjct: 243 SPHSLRHSFATHLLEGGADIRVVQELLGHASVATTQIYTKVSPEH----LREIWASSHP 297 >gi|149278899|ref|ZP_01885034.1| integrase [Pedobacter sp. BAL39] gi|149230518|gb|EDM35902.1| integrase [Pedobacter sp. BAL39] Length = 294 Score = 119 bits (297), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 86/302 (28%), Positives = 152/302 (50%), Gaps = 18/302 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L+ E+ S T+QSYE D QF +L+ E + ++R ++ Sbjct: 6 FLTYLKHEKRYSPHTIQSYETDLLQFEAYLSDVYE-----LALPDAGRAQVRDYMVWLME 60 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 ++I +RS+ R LS ++SF K+L S + +R K N LP + + + L+D+ Sbjct: 61 RQIAERSVARKLSALRSFYKHLVAGGAIASSPMALVRAPKVPNRLPVFVEDHKLDQLLDS 120 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + + R+ ++ +L+G G+R+SE +++ Q++ S++++ GK +K RI+ Sbjct: 121 TEIFND---SFSSVRDKLVIEMLFGTGMRVSELVNVKLQDVDFYASSVKVLGKRNKERII 177 Query: 201 PL---LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 P+ L S+ K ++ L F+ N LF +G + G + + Y+ Sbjct: 178 PIGKTLTSLLKVYIDTKTLQDFN---NKTEYLFVTNKGAAVTRGFIYKIVTSYLTYVSTQ 234 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + H LRHS+AT LL+ G DL +I+ +LGH L+ TQ+YT+ N + + IY Q Sbjct: 235 DKKSPHVLRHSYATSLLNRGADLNAIKELLGHASLAATQVYTH----NSIERLKSIYKQA 290 Query: 318 HP 319 HP Sbjct: 291 HP 292 >gi|296269467|ref|YP_003652099.1| tyrosine recombinase XerD [Thermobispora bispora DSM 43833] gi|296092254|gb|ADG88206.1| tyrosine recombinase XerD [Thermobispora bispora DSM 43833] Length = 313 Score = 119 bits (297), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 94/315 (29%), Positives = 153/315 (48%), Gaps = 31/315 (9%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L +L +ERGLS T+ SY D R++L L + ++T+ ++ ++ AF++ R Sbjct: 11 SYLNHLAVERGLSANTVASYRRDLRRYLDHL-----KARGLRTLAEVREDDVAAFLTALR 65 Query: 80 TQKIGDRSL-----KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 +L R+ S ++ ++ + +T +R ++ LP+A++ ++ Sbjct: 66 EGDADHPALVASSAARAFSAVRGLHRFALREGLTRHDPAHAIRPPRQLRRLPKAISVEE- 124 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST------L 188 V+ ++ + + RN A+L LLYG G RISEA+ L ++ T + Sbjct: 125 ---VERLIAACGPDGSPLTLRNRALLELLYGTGARISEAVGLAVDDVTTGAPTDPARDQV 181 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ----LPLFRGIRGKPLNPGVFQ 244 R++GKG + RIVPL R+A+ Y L L Q LF RG L Sbjct: 182 RLRGKGGRTRIVPLGRYARQALDAY--LVRARPQLAAQGRGTSALFLNARGGRLTRQGAW 239 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 ++ GL + H LRHSFATHLL G D+R +Q +LGH ++TTQ+YT V Sbjct: 240 EVLQAAAERAGLS-GVSPHMLRHSFATHLLDGGADVRVVQELLGHASVATTQVYTLVTV- 297 Query: 305 NGGDWMMEIYDQTHP 319 D + E+Y HP Sbjct: 298 ---DRLREVYAAAHP 309 >gi|90581049|ref|ZP_01236849.1| tyrosine recombinase [Vibrio angustum S14] gi|90437745|gb|EAS62936.1| tyrosine recombinase [Vibrio angustum S14] Length = 301 Score = 119 bits (297), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 85/295 (28%), Positives = 150/295 (50%), Gaps = 16/295 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L ER LS T Q+Y+ RQ E +++ +Q+ +R SK + Sbjct: 17 LRSERELSLHTQQNYK---RQLTRVAEQLVE--LSVDNWQQVDAGWVRQIASKGMRDGLK 71 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 SL LS ++SF +L + + + + +K+ LP+ L+ + L+D Sbjct: 72 ASSLAMRLSALRSFFDFLVHQNVLKANPAKGVAAPRKARPLPKNLDVDEMNQLLD----- 126 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 ++ + R+ A++ L+YG GLR++E + + ++I + LR+ GKGDK R+VP Sbjct: 127 -VNDDDPLAIRDRAMMELMYGAGLRLAELVGIDVRHISLSKGDLRVIGKGDKERVVPFSG 185 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 R+ I ++ L ++ + LF G ++ Q+ + + + + H Sbjct: 186 LAREWIAKWLKLRD-NIAQAEEPALFVSKLGTRISTRNVQKRMAEWGQKQAVSSHINPHK 244 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LRHSFATH+L + GDLR++Q +LGH LSTTQIYT+++ ++ + ++YD+ HP Sbjct: 245 LRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LAKVYDEAHP 295 >gi|260907246|ref|ZP_05915568.1| phage integrase family protein [Brevibacterium linens BL2] Length = 319 Score = 119 bits (297), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 89/307 (28%), Positives = 144/307 (46%), Gaps = 26/307 (8%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFY----TEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 R +S T ++Y D F A + + + + ++R+++ Sbjct: 21 RDVSAHTSRAYVADVSDFFDHTAHAPGAGDKSRAAELQVSDIDLNDLRSWLITLDDAGAA 80 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD-NVLL 143 ++ R ++ +KSF Y + + + +R KK + LP L +QA LV + Sbjct: 81 KSTVARKIAAVKSFFAYCVNQHGLSNNPAARLRTPKKDSRLPTVLKPQQAADLVSRQRTV 140 Query: 144 HTSHE-------TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 HT + TKW+ R++AIL +LY +R+SE L ++ +S + + GKG+K Sbjct: 141 HTEADNSDPIEATKWV--RDAAILEMLYATAVRVSELTGLNRGDVDHQRSMITVLGKGNK 198 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-RRYLG 255 R VP + A+ ++ L + + LF G+RG + R +R+L RY Sbjct: 199 ERRVPYGKPAQTALQKWLSLRDTFASESSGDALFLGVRGGRIG----ARQVRELVHRYGA 254 Query: 256 LPLSTT---AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 S H LRHS ATH+L G DLR IQ +LGH +S+TQIYT+V+ + + E Sbjct: 255 ADPSAPDIGPHGLRHSAATHMLDGGADLRQIQELLGHSTMSSTQIYTHVSMQR----LQE 310 Query: 313 IYDQTHP 319 Y Q HP Sbjct: 311 TYRQAHP 317 >gi|329297033|ref|ZP_08254369.1| site-specific tyrosine recombinase XerC [Plautia stali symbiont] Length = 303 Score = 119 bits (297), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 88/311 (28%), Positives = 155/311 (49%), Gaps = 27/311 (8%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 LL + +L+ L++ER LS LT ++Y+ RQ +A + IT + QL ++R+ Sbjct: 7 LLPAVEGFLRYLKVERQLSPLTQKNYQ---RQLQALIAMADDMHITAWS--QLEPAQVRS 61 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 ++ R +G SL +S ++SFL + + + + + + + + LP+ ++ Sbjct: 62 LAARSRRGGLGASSLALRMSALRSFLDWQVSQGMLSANPAKGIATPRNARHLPKNMD--- 118 Query: 134 ALTLVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 VD V + A R+ A+L +YG GLR++E + + +++ + + ++G Sbjct: 119 ----VDEVSQLLDIDLDDPLAVRDRAMLETMYGGGLRLAELVGIDCRHLDLESGEVWVRG 174 Query: 193 KGDKIRIVPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 KG K R VP+ + + + L P D +F RG ++ Q+ Sbjct: 175 KGSKERRVPIGGTAVTWLQHWLPLRNSFAPQDD------AVFVSTRGSRISARNVQKRFA 228 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 + G+ H LRHSFATHLL + GDLR++Q +LGH LSTTQIYT+++ ++ Sbjct: 229 EWGIKQGVASHIHPHKLRHSFATHLLESSGDLRAVQELLGHVNLSTTQIYTHLDFQH--- 285 Query: 309 WMMEIYDQTHP 319 + +YD HP Sbjct: 286 -LASVYDAAHP 295 >gi|18479027|gb|AAL73390.1|AF416734_1 site-specific recombinase [Pseudomonas fluorescens] Length = 298 Score = 119 bits (297), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 92/306 (30%), Positives = 148/306 (48%), Gaps = 22/306 (7%) Query: 17 ERQ--NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 ERQ + ++L ER +S TL +Y D + + + +K I + L +R+ Sbjct: 2 ERQLDAYCEHLRSERQVSPHTLSAYRRDLEKVVGWC-----QKQNIGSWAALDIQRLRSL 56 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 I++ Q RSL R LS ++ YL + + + K LP+ LN +A Sbjct: 57 IARLHQQGQSSRSLARLLSAVRGLYHYLNREGLCDHDPATGLAPPKGERRLPKTLNTDRA 116 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 L L++ + E ++ R+ AIL L Y GLR+SE L + +++ GKG Sbjct: 117 LQLLEGAV-----EDDFLAQRDQAILELFYSSGLRLSELTGLNLDQLDLADGMVQVLGKG 171 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-RRY 253 K R++P+ R+A+ ++ L L +F +GK L P Q ++ R Sbjct: 172 SKTRLLPVGRKAREALEQWLALRA--LTNPADDAVFVSQQGKRLGPRAIQLRVKAAGERE 229 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 LG L H L HSFA+HLL + DLR++Q +LGH + TTQIYT+++ ++ + + Sbjct: 230 LGQNLHP--HML-HSFASHLLESSQDLRAVQELLGHSDIKTTQIYTHLDFQH----LATV 282 Query: 314 YDQTHP 319 YD HP Sbjct: 283 YDSAHP 288 >gi|291457690|ref|ZP_06597080.1| tyrosine recombinase [Bifidobacterium breve DSM 20213] gi|291380743|gb|EFE88261.1| tyrosine recombinase [Bifidobacterium breve DSM 20213] Length = 339 Score = 119 bits (297), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 90/323 (27%), Positives = 149/323 (46%), Gaps = 47/323 (14%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +++ L RGLS TL++Y CD L E + ++ +++ ++R++++ Sbjct: 9 SFISYLRANRGLSANTLKAYRCDIEACLHLF-----ELRGVVSLNEITLNDLRSWMATE- 62 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + S+ R ++ F + + + + + N+LP L E QA L+D Sbjct: 63 SHNHARSSMARKTVAVRGFFAWGYEHGVVGVNPAATLMTPSIPNTLPTVLTESQAEQLLD 122 Query: 140 -----------------NVLLHTSHETKWIDA----------RNSAILYLLYGCGLRISE 172 + H + A R+ AIL LLY G+R++E Sbjct: 123 CAEHSEALQRKNRDISNDSSADGPHSARGRSADRAREIAERQRDVAILELLYATGIRVAE 182 Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQ--LP- 228 +SL +++ T+R+ GKG+K R+VP +A+ ++ D P L I+ +P Sbjct: 183 LVSLDIRDVDFSNRTVRVTGKGNKQRVVPFGLPAEQALQDWIDYGRPALARLAIEKAVPP 242 Query: 229 ---------LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279 LF G+RGK LN V + + + R G+P + H LRHS ATH+L G D Sbjct: 243 NGISSDEGALFLGMRGKRLNQRVAREIVHKAAREAGVP-DISPHALRHSAATHMLDGGAD 301 Query: 280 LRSIQSILGHFRLSTTQIYTNVN 302 LR +Q +LGH L TTQ YT+V+ Sbjct: 302 LREVQEMLGHSSLKTTQRYTHVS 324 >gi|296104556|ref|YP_003614702.1| site-specific tyrosine recombinase XerD [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059015|gb|ADF63753.1| site-specific tyrosine recombinase XerD [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 298 Score = 119 bits (297), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 91/304 (29%), Positives = 158/304 (51%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +E+ L++ TL +Y D + +LA +++++ + +++A + +R Sbjct: 9 EQFLDALWLEKNLAQNTLSAYRRDLTMLVEWLA---HRGLSLESAQS---DDLQALLGER 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ ++L + KI + + + K LP+ L+E Q L+ Sbjct: 63 MEGGYKATSSARLLSAMRRLFQHLYREKIRADDPSALLASPKLPQRLPKDLSEAQVERLL 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + + ++ R+ A+L LLY GLR+SE + LT +I Q +R+ GKG+K R Sbjct: 123 QSPAVDLP-----LELRDKAMLELLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VPL + Y + P+ LN ++I + LF R + + F I+ G+ Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYATLAGI 236 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292 Query: 316 QTHP 319 Q HP Sbjct: 293 QHHP 296 >gi|324115089|gb|EGC09054.1| tyrosine recombinase XerD [Escherichia fergusonii B253] Length = 298 Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 90/304 (29%), Positives = 156/304 (51%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +E+ L++ TL +Y R + + + +T+ T + +++A +++R Sbjct: 9 EQFLDALWLEKNLAENTLNAYR---RDLSMMVEWLHHRGLTLATAQS---DDLQALLAER 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + + ++ + K LP+ L+E Q L+ Sbjct: 63 LEGGYKATSSARLLSAVRRLFQYLYRENFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L+ ++ R+ A+L +LY GLR+SE + LT +I Q +R+ GKG+K R Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VPL + Y + P+ LN ++I + LF R + + F I+ G+ Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292 Query: 316 QTHP 319 Q HP Sbjct: 293 QHHP 296 >gi|119717469|ref|YP_924434.1| phage integrase family protein [Nocardioides sp. JS614] gi|119538130|gb|ABL82747.1| tyrosine recombinase XerC subunit [Nocardioides sp. JS614] Length = 312 Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 93/319 (29%), Positives = 154/319 (48%), Gaps = 23/319 (7%) Query: 6 LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65 LPE ++ L ++ ++L ER LS+ T+++Y D L + + + +R Sbjct: 10 LPEAMARAL----GDYERHLAAERDLSEHTVRAYIGDVAGLLEHASRLGQTEPGDLDLRT 65 Query: 66 LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 L R++++K++T +L R + + F +L + T ++ K +L Sbjct: 66 L-----RSWLAKQQTMGRSRTTLARRATAARVFTAWLARTGRTPLDAGASLGAPKAHRTL 120 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 P L +A LV + H + + R+ A+L LLY G+R+ E + L ++ ++ Sbjct: 121 PPVLRTDEAADLVRAAVEHADDGSP-VGLRDVAMLELLYATGIRVGELVGLDIDDLDRER 179 Query: 186 STLRIQGKGDKIRIVPL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 + +R+ GKG K R VP P+ R P LF G RG+ ++ Q Sbjct: 180 NVVRVLGKGRKERTVPFGRPAARAVDFWLKHGRPLLAVEGSGAALFLGARGRRID----Q 235 Query: 245 RYIRQL--RRYLGLPLSTT--AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 R +R + RR +P + H LRH+ ATHLL G DLRS+Q +LGH L+TTQIYT+ Sbjct: 236 RAVRTVVHRRIAEVPGAPDIGPHGLRHTAATHLLEGGADLRSVQELLGHASLATTQIYTH 295 Query: 301 VNSKNGGDWMMEIYDQTHP 319 V+++ + Y Q HP Sbjct: 296 VSTER----LRRAYQQAHP 310 >gi|121604082|ref|YP_981411.1| tyrosine recombinase XerD [Polaromonas naphthalenivorans CJ2] gi|120593051|gb|ABM36490.1| tyrosine recombinase XerD subunit [Polaromonas naphthalenivorans CJ2] Length = 300 Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 89/303 (29%), Positives = 155/303 (51%), Gaps = 20/303 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE---IRAFISK 77 ++ L +E GLS+ TL +Y D + +L + +E Q R+L T+ ++A+ S Sbjct: 12 FIDALWLEDGLSRNTLAAYRRDLSLYAGWL--HAKE----QQHRKLDDTDEDDLKAYFSF 65 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 R S R L+ K + ++ + + L +++ K++ +P+ ++E Q Sbjct: 66 RHAATKAT-SANRCLTVFKRYFRWALRENLIAADPTLKLQSAKQALRVPKVMSEAQ---- 120 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 VD +L +T + R+ A+L L+Y GLR+SE + L ++ ++ LR+ GKG Sbjct: 121 VDALLAAPDDDTP-LGLRDRAMLELMYASGLRVSELVGLKTFHVGLNEGALRVMGKGSAE 179 Query: 198 RIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 R+VP R+ I+ Y + P L LF G ++ +F +++ G+ Sbjct: 180 RLVPFGQVAREWIVRYIAESRPAILGGQQTDDLFVTGHGHGMSRVMFWMLVKKYALLAGI 239 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + HTLRH+FATHLL++G DLR++Q +LGH +STT IYT+V + + I+ + Sbjct: 240 HSPLSPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVARER----LKSIHAE 295 Query: 317 THP 319 HP Sbjct: 296 HHP 298 >gi|262404730|ref|ZP_06081285.1| site-specific recombinase XerD [Vibrio sp. RC586] gi|262349762|gb|EEY98900.1| site-specific recombinase XerD [Vibrio sp. RC586] Length = 302 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 93/304 (30%), Positives = 153/304 (50%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + ERGL++ T+ SY D + L ++A + + + I E + ++++ Sbjct: 13 EQFLDAMWFERGLAENTVASYRNDLSKLLGWMA---QHQYRLDFISFSGLQEYQIWLTE- 68 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q S R LS I+ +YL + K+ + + + K LP+ L E Q Sbjct: 69 --QDYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLISPKLPTRLPKDLTEAQV---- 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL I+ R+ A+L LLY GLR++E +SLT +N+ Q +R+ GKG K R Sbjct: 123 -EALLSAPDPQTPIELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVIGKGGKER 181 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VP+ + + I E + L L Q +F RG+ + F I+ + Sbjct: 182 LVPMGENAVEWI-ETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAEI 240 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + H LRH+FATHLL+ G DLR +Q +LGH LSTTQIYT+V ++ + ++++ Sbjct: 241 DVEQLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQLHN 296 Query: 316 QTHP 319 + HP Sbjct: 297 EHHP 300 >gi|147918869|ref|YP_687405.1| integrase [uncultured methanogenic archaeon RC-I] gi|110622801|emb|CAJ38079.1| integrase [uncultured methanogenic archaeon RC-I] Length = 278 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 90/285 (31%), Positives = 140/285 (49%), Gaps = 34/285 (11%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T++ Y +F + E + + +R L+Y +SK + LS Sbjct: 25 TIRQYGMILNRFYKYTGKQPEMVVRPEIVRYLNYLMFEKHLSKTTVANV--------LSV 76 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 +KSF ++ + + + N+K P L + L+D ID Sbjct: 77 LKSFYSFMLDNGYVSSNPTRGINNIKLDKKAPVYLTVSEMNDLLDTA----------IDT 126 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ I+ LLY G+R+SE +++ ++I D+ T+++ GKG K RIV L+P + E Y Sbjct: 127 RDRIIVRLLYATGVRVSELVNIRKKDIDFDRCTIKVFGKGAKERIV-LVPET--VVKEMY 183 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 D + +L+ LF L P QR I+QL R + + T H LRHSFATH+L Sbjct: 184 D---YAASLSNDDRLFN------LTPRTVQRDIKQLARRAKINKNVTPHKLRHSFATHML 234 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 NGG++ +IQ +LGH L+TTQIYT+ N D + E+Y +THP Sbjct: 235 QNGGNVVAIQKLLGHSSLNTTQIYTHYNV----DELKEMYGRTHP 275 >gi|254492199|ref|ZP_05105373.1| tyrosine recombinase XerC [Methylophaga thiooxidans DMS010] gi|224462524|gb|EEF78799.1| tyrosine recombinase XerC [Methylophaga thiooxydans DMS010] Length = 302 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 88/313 (28%), Positives = 153/313 (48%), Gaps = 21/313 (6%) Query: 10 VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69 +S EL + +L L +R LS T+ +Y D Q + F + + + Sbjct: 1 MSNELEQHANIFLDYLAQQRRLSHHTVNNYRRDLTQLIDFC-----QGQELSHWHSVKPA 55 Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 ++R FI+ + + R+++R LS +S +YL ++ + + ++ K LP L Sbjct: 56 DLRQFIAFLHRKGLASRTIQRMLSATRSLYQYLIRQGLAETNPAQAVQAPKAEKRLPSTL 115 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 + Q N LL + ++ R+ AI+ L Y GLR++E +L ++I + Sbjct: 116 DVDQM-----NALLDQTQADTFVACRDRAIMELFYSSGLRLAELATLDLRDIDFGDQLVH 170 Query: 190 IQGKGDKIRIVPLLPSVRKAI---LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 + GKG+K R+ P+ KA+ LE D F Q +F +G+ L Q+ Sbjct: 171 VTGKGNKDRVCPVGAVAIKALQDWLEKRDQTGF----FDQPAVFITQQGRRLGMRSIQKR 226 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 + + G+ H LRH+FA+H+L + GDLR++Q +LGH +STTQIYT+V+ ++ Sbjct: 227 LSFWGKKQGISDRVHPHRLRHAFASHMLESSGDLRAVQELLGHSDISTTQIYTHVDFQH- 285 Query: 307 GDWMMEIYDQTHP 319 + ++YD HP Sbjct: 286 ---LAKVYDSAHP 295 >gi|84490143|ref|YP_448375.1| site-specific recombinase/integrase [Methanosphaera stadtmanae DSM 3091] gi|84373462|gb|ABC57732.1| predicted site-specific recombinase/integrase [Methanosphaera stadtmanae DSM 3091] Length = 316 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 87/246 (35%), Positives = 122/246 (49%), Gaps = 31/246 (12%) Query: 83 IGDRSLKRS---LSGIKSFLKYLKKRKITTESNIL-------------------NMRNLK 120 + DR +K L K +L+YLK+ K + + I ++ K Sbjct: 47 LSDRKIKDEKGMLRAFKRYLQYLKREKEVSTNYIYLVTVVLKKFFEFAEIHIYEEIKAPK 106 Query: 121 KSNSLPRALNEKQALTLV---DNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSL 176 ++ SLP++LNE++ L+ DN + I RN IL LLY GLR+SE L Sbjct: 107 RTKSLPKSLNEQEVYDLIHAKDNEYDPEKTNPQNITRLRNKLILTLLYSTGLRVSELTKL 166 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 I +++ T+R++GKGDK RIV I EY D + LF R Sbjct: 167 KVTTIDENERTIRVRGKGDKDRIVIFDEDTLDLIHEYLDKRGVE-----NEYLFVNQRNT 221 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 L+ Q I++ + G+ T H LRHSFATHLL NG D+R+IQ +LGH LSTTQ Sbjct: 222 SLSSRYIQLMIKEYAKDAGITRRVTPHILRHSFATHLLKNGVDIRAIQQLLGHSNLSTTQ 281 Query: 297 IYTNVN 302 IYT+V+ Sbjct: 282 IYTSVD 287 >gi|314936587|ref|ZP_07843934.1| tyrosine recombinase XerC [Staphylococcus hominis subsp. hominis C80] gi|313655206|gb|EFS18951.1| tyrosine recombinase XerC [Staphylococcus hominis subsp. hominis C80] Length = 297 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 89/315 (28%), Positives = 164/315 (52%), Gaps = 28/315 (8%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 ++ +L L++ER S TL++Y D QF FL E+++ +R Y + R ++S Sbjct: 5 QKKFLNMLKVERNFSDHTLKAYHDDLAQFNQFL----EQELL--NLRTFEYKDARNYLSY 58 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 + + ++ R +S +++F ++ + + + + + + KK LP+ E++ L Sbjct: 59 LYSNNLKRTTVSRKISTLRTFYEFWMTQDTSVNNPFIQLVHPKKEQYLPQFFYEEEMEAL 118 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 + V S++ K R+ ++ LLY G+R+SE +++ ++ + +++ GKG+K Sbjct: 119 FNTV----SNDAKK-GLRDRVVIELLYATGIRVSELVNIKVMDLDMNLPGVKVLGKGNKE 173 Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-----R 251 R VP R++I +Y + P L L ++G P+ +R IR L + Sbjct: 174 RFVPFGEFCRQSIEQYLEKFKP--LKSKSHPYLIVNMKGDPIT----ERGIRYLLNDVVK 227 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 R G+ H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++ + Sbjct: 228 RTAGVT-EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ----LR 282 Query: 312 EIYDQTHPSITQKDK 326 ++Y HP ++ K Sbjct: 283 KVYLSAHPRAKKESK 297 >gi|304388409|ref|ZP_07370516.1| tyrosine recombinase XerC [Neisseria meningitidis ATCC 13091] gi|304337590|gb|EFM03752.1| tyrosine recombinase XerC [Neisseria meningitidis ATCC 13091] Length = 305 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 87/308 (28%), Positives = 148/308 (48%), Gaps = 17/308 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI--TIQTIRQLSYTEIRAFISKR 78 +L+N+ + G S T+ +Y D + LA E Q + Q +T +S+R Sbjct: 13 YLENI-VREGKSGHTVAAYRRDLEELFALLAQMPSEDAGGVPQGLSQRDFTAALRRLSQR 71 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + R+L R LS + + +L KR + +++ K+ +P+AL ++ ++ Sbjct: 72 ---GLNARTLARKLSSWRQYCAWLVKRGLLHTDPTADIKPPKQPERVPKALPQEWLNRML 128 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + + R+ A+ L+YG GLR+SE L ++ D++ + + GKG K R Sbjct: 129 DLPV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQR 184 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VPL+ +A+ Y P + LF G G L+ Q+ + Q G Sbjct: 185 QVPLVGKSVEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGR 241 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + H +RHS+A HLL D+R++Q +LGH LSTTQIYT ++ D + +YD+ H Sbjct: 242 HVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAH 297 Query: 319 PSITQKDK 326 P ++D+ Sbjct: 298 PRAKRQDE 305 >gi|163839844|ref|YP_001624249.1| XerC/XerD family integrase [Renibacterium salmoninarum ATCC 33209] gi|162953320|gb|ABY22835.1| integrase, XerC/XerD family [Renibacterium salmoninarum ATCC 33209] Length = 308 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 87/302 (28%), Positives = 149/302 (49%), Gaps = 19/302 (6%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 Q+L ER S+ T+++Y D + Y +++I ++ IR ++ ++ + Sbjct: 19 QHLRAERARSEHTIRAYSADVESLM-----YYAIAAGVRSIDEIDLATIREWLGEQSSDG 73 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 + +L R + ++ + + + ++ + L ++ K+ +LP L + Q ++ + L Sbjct: 74 LARSTLARRAASTRTLMSWALREELISVDPTLRLKAPKRQKTLPGVLQQNQMARMLAD-L 132 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202 + E R+ AI+ LLY GLR+ E L ++ ++ T+ + GKG+K R VP Sbjct: 133 ASAAEEGSAAALRDLAIVELLYAAGLRVGELAGLDLDDLDFERRTVVVLGKGNKERSVPF 192 Query: 203 LPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL--RRY--LGLP 257 +A+ + P LF G RG ++ QR IR + R+ LG Sbjct: 193 GQPAARALQAWLQTGRPAFYREGSGAALFLGTRGGRID----QRQIRSVVGSRFVALGDT 248 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 +T+ H LRH+ ATHLL G DLR++Q ILGH L+TTQIYT+V+ D + Y Q Sbjct: 249 SATSPHALRHTAATHLLDGGADLRAVQEILGHSSLATTQIYTHVSV----DRLRSSYQQA 304 Query: 318 HP 319 HP Sbjct: 305 HP 306 >gi|262202720|ref|YP_003273928.1| tyrosine recombinase XerD [Gordonia bronchialis DSM 43247] gi|262086067|gb|ACY22035.1| tyrosine recombinase XerD [Gordonia bronchialis DSM 43247] Length = 313 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 94/307 (30%), Positives = 150/307 (48%), Gaps = 22/307 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF-ISKRR 79 +L +L +ERG + T+ SY D ++ +L I + +++ ++IR F ++ RR Sbjct: 18 YLDHLTVERGAAHNTVTSYRRDLERYQNYLIARG-----ISGLAEVTESDIREFLVALRR 72 Query: 80 ------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 ++ + D S+ R+L + F + + + +R + + LP++L + Sbjct: 73 GDEATGSRPLADSSIARTLVATRRFHGFAVDEGVVSTDVAHAVRPPRPARRLPKSLPVDE 132 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L +++ T + + R+ A+L LLY CG RISEA SL ++ +R++GK Sbjct: 133 VLAILEAS--STGDHPRAL--RDRALLELLYSCGARISEATSLDVDDLDTAARAVRLRGK 188 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRR 252 G K RIVP+ AI Y L LF RG L+ +Q + R Sbjct: 189 GGKERIVPVGGPAADAIDAYLVRGRPVLATRSAPALFLNARGGRLSRQSAWQVLVSAAER 248 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 GL + + HTLRHSFATHLL G D+R +Q +LGH ++TTQ+YT V M E Sbjct: 249 -AGLDKAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVNT----MRE 303 Query: 313 IYDQTHP 319 +Y HP Sbjct: 304 VYATAHP 310 >gi|170765975|ref|ZP_02900786.1| tyrosine recombinase XerD [Escherichia albertii TW07627] gi|170125121|gb|EDS94052.1| tyrosine recombinase XerD [Escherichia albertii TW07627] Length = 298 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 90/304 (29%), Positives = 156/304 (51%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +E+ L++ TL +Y R + + + +T+ T + +++A +++R Sbjct: 9 EQFLDALWLEKNLAENTLNAYR---RDLSMMVEWLHHRGLTLATAQS---DDLQALLAER 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K + + + + LP+ L+E Q L+ Sbjct: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAYLASPRLPQRLPKDLSEAQVERLL 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L+ ++ R+ A+L +LY GLR+SE + LT +I Q +R+ GKG+K R Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VPL + Y + P+ LN ++I + LF R + + F I+ G+ Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292 Query: 316 QTHP 319 Q HP Sbjct: 293 QHHP 296 >gi|15803430|ref|NP_289463.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7 EDL933] gi|15833020|ref|NP_311793.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7 str. Sakai] gi|168760022|ref|ZP_02785029.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4501] gi|217327493|ref|ZP_03443576.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. TW14588] gi|34222933|sp|Q8X574|XERD_ECO57 RecName: Full=Tyrosine recombinase xerD gi|12517420|gb|AAG58022.1|AE005519_8 site-specific recombinase [Escherichia coli O157:H7 str. EDL933] gi|13363238|dbj|BAB37189.1| site-specific recombinase [Escherichia coli O157:H7 str. Sakai] gi|189369440|gb|EDU87856.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4501] gi|209760580|gb|ACI78602.1| site-specific recombinase [Escherichia coli] gi|217319860|gb|EEC28285.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. TW14588] gi|326339022|gb|EGD62837.1| Tyrosine recombinase XerD [Escherichia coli O157:H7 str. 1044] Length = 298 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 90/304 (29%), Positives = 156/304 (51%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +E+ L++ TL +Y R + + + +T+ T + +++A +++R Sbjct: 9 EQFLDALWLEKNLAENTLNAYR---RDLSMMVEWLHHRGLTLATAQS---DDLQALLAER 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K + ++ + K LP+ L+E Q L+ Sbjct: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L+ ++ R+ A+L +LY GLR+SE + LT +I Q +R+ GKG+K R Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VPL + Y + P+ LN ++I + LF R + + I+ G+ Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTLWHRIKHYAVLAGI 236 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292 Query: 316 QTHP 319 Q HP Sbjct: 293 QHHP 296 >gi|148210|gb|AAA67607.1| unknown [Escherichia coli str. K-12 substr. MG1655] Length = 298 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 91/307 (29%), Positives = 151/307 (49%), Gaps = 17/307 (5%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L + + +L+ L +ER LS +TL +Y+ RQ + F +E +Q+ +Q T +R Sbjct: 3 DLHTDVERYLRYLSVERQLSPITLLNYQ---RQLEAIINFASEN--GLQSWQQCDVTMVR 57 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 F + R + +G SL LS ++SF +L + + + K LP+ ++ Sbjct: 58 NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 L+D + + R+ A+L ++YG GLR+SE + L +++ + + + G Sbjct: 118 DMNRLLDIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 KG K R +P+ I + DL DL + LF GK + Q+ + Sbjct: 172 KGSKERRLPIGRKPVAWIEHWLDLR--DLFGSEDDALFLSKLGKRXSARNVQKRFAEWGI 229 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 GL H L HSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ + Sbjct: 230 KQGLNNHVHPHKLXHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LAS 285 Query: 313 IYDQTHP 319 +YD HP Sbjct: 286 VYDAAHP 292 >gi|293189843|ref|ZP_06608557.1| tyrosine recombinase XerC [Actinomyces odontolyticus F0309] gi|292821258|gb|EFF80203.1| tyrosine recombinase XerC [Actinomyces odontolyticus F0309] Length = 285 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 85/295 (28%), Positives = 142/295 (48%), Gaps = 18/295 (6%) Query: 31 LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ-LSYTEIRAFISKRRTQKIGDRSLK 89 +S T+ +Y D + FL+ + T + +R+ L+ +R+++++ ++ Sbjct: 1 MSPHTVSAYLGDLHSLMEFLSL--DADATPEQLREALTQRAVRSWLARTLADGGARSTIA 58 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 R + I++F + + I + + + LP L+E A VLL+T+ + Sbjct: 59 RHTAAIRNFTSWAMREGILVSDPAALLSSPRADQLLPSPLDESDA-----RVLLNTARDE 113 Query: 150 KWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 RN AIL L Y CGLR+SE +L ++ + T+R+ GKG+K R+VP P Sbjct: 114 AAAGGASQIRNWAILELTYACGLRVSEVCALDIPSLNREALTVRVVGKGNKERVVPYGPP 173 Query: 206 VRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 A+ + P LF G +G ++P + + + + G+ H Sbjct: 174 AADALDHWLVRGRPQLAGERSGNALFLGDKGGRIDPRIVRSMVHKTAARAGV-HDIAPHG 232 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LRHS ATHLL G DLR++Q +LGH LSTTQ YT+V++ + IY + HP Sbjct: 233 LRHSTATHLLQGGADLRAVQEMLGHSSLSTTQRYTHVDTAR----LSAIYQRAHP 283 >gi|109900374|ref|YP_663629.1| phage integrase [Pseudoalteromonas atlantica T6c] gi|109702655|gb|ABG42575.1| tyrosine recombinase XerC subunit [Pseudoalteromonas atlantica T6c] Length = 298 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 90/309 (29%), Positives = 154/309 (49%), Gaps = 48/309 (15%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L+ ER L+ ++++Y+ RQ + +TI +L+ +R +++ R Q + Sbjct: 18 LKYERNLAAKSIENYQ---RQLASIC-----QALTITAWPELTVDHVRQVLNQARRQGLS 69 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV-LL 143 RS+ LS ++ + YL + ++ + + ++ K+ + LP+ LN VD + L Sbjct: 70 PRSIALRLSALRGYCAYLVELEVLSSNPAKAVQAPKQGSPLPKQLN-------VDEMHQL 122 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 + + R+ A+L L Y CGLR++E L +++ DD LR+ GKG K RI+P+ Sbjct: 123 LDFDDDSLLGVRDKAMLELTYSCGLRLAELADLNLKSLQDD-GQLRVIGKGSKERILPVG 181 Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----QRYI--RQLRRYL--- 254 + K + E+ + RG+ P +F +R I RQ+ + + Sbjct: 182 KTALKCLGEWLKV--------------RGVLADGDEPALFLSKHRRRISHRQIAKRMQLW 227 Query: 255 ----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 L H LRHSFATH+L + GDLR +Q +LGH LSTTQ+YT++N ++ + Sbjct: 228 AKQQHLDQDINPHKLRHSFATHILESSGDLRGVQELLGHANLSTTQVYTHLNFQH----L 283 Query: 311 MEIYDQTHP 319 +YD HP Sbjct: 284 ASVYDTAHP 292 >gi|226313077|ref|YP_002772971.1| tyrosine recombinase [Brevibacillus brevis NBRC 100599] gi|226096025|dbj|BAH44467.1| probable tyrosine recombinase [Brevibacillus brevis NBRC 100599] Length = 314 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/302 (27%), Positives = 144/302 (47%), Gaps = 18/302 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 + + L +E+ S T++ Y D +F+ F+ E+ I +SY R+F+++ Sbjct: 14 FTRYLRVEKNASPHTVKQYVADISEFVSFM-----EQHQITVFAAVSYLHGRSFLAQLAG 68 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + RS+ R LS ++S ++L + ++ + K LP L ++ D Sbjct: 69 RGLSRRSIARKLSSLRSLYRFLLREGQLEQNPFQLVSTPKMEKKLPSFLYPQEVQAFFD- 127 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 T + R+ I LLY G+R++E +L+ ++ + GKG K R V Sbjct: 128 ----LPDTTTPLGIRDRLIFELLYASGMRVTELTTLSVSDVNPSMGVALVYGKGAKERYV 183 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 P+ + +Y + L L ++ L RG+PL+ +R + + L Sbjct: 184 PVGSYACDVLRQYLEHGREKL-LAGKVEHGNLLVNYRGEPLSDRSVRRIVDKYVDTYALQ 242 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 L + HT RH+FATH+L+ G DLR++Q +LGH +STTQ+YT+V + + +YD Sbjct: 243 LRVSPHTFRHTFATHMLNGGADLRTVQELLGHVNVSTTQVYTHVTK----ERLRHVYDTA 298 Query: 318 HP 319 HP Sbjct: 299 HP 300 >gi|260461664|ref|ZP_05809911.1| tyrosine recombinase XerD [Mesorhizobium opportunistum WSM2075] gi|259032734|gb|EEW33998.1| tyrosine recombinase XerD [Mesorhizobium opportunistum WSM2075] Length = 305 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 133/297 (44%), Gaps = 30/297 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ + ERG ++ TL SY D +I + +IRA++ Sbjct: 8 EAFLEMMSAERGAAENTLSSYRRDLED--------ASNEIDGGLA-GAAAADIRAYLDDI 58 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S R LS I+ F K+L + + + + KK LP+ ++E L+ Sbjct: 59 AARGFAPTSQARKLSAIRQFFKFLYAEGLRGDDPTGTLDSPKKGRPLPKTMSEADTGRLI 118 Query: 139 DNVLLHTS-----HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 D H + R A++ +LY GLR+SE + L D ++GK Sbjct: 119 DRAATEAGDAGLGHADRLAALRLHALVEVLYATGLRVSELVGLPVTVAQRDDRFFMVRGK 178 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR--------GIRGKPLNPGVFQR 245 GDK R+VPL R A+ + L +P F L+ VF R Sbjct: 179 GDKERMVPLSAKARAAMRTW-------LAARAGVPAFAESPFLFPAASDSGYLSRQVFAR 231 Query: 246 YIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 ++ L G+ + + H LRH+FA+HLL NG DLR++Q +LGH +STTQIYT+V Sbjct: 232 DLKGLAARAGIASAKVSPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTHV 288 >gi|254515505|ref|ZP_05127565.1| tyrosine recombinase XerC [gamma proteobacterium NOR5-3] gi|219675227|gb|EED31593.1| tyrosine recombinase XerC [gamma proteobacterium NOR5-3] Length = 311 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 88/319 (27%), Positives = 153/319 (47%), Gaps = 15/319 (4%) Query: 10 VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69 S L + +L+ L R LS T+ +Y D F F ++ ++ + + Sbjct: 7 TSASLAQRIAAFLEYLRSVRRLSSHTVTAYRRDLDSFEDFC-----QQHSVTGCSDVQES 61 Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 +R ++++ + SL+R LS ++++ ++ + L ++ +K LP L Sbjct: 62 HVRQWLAQGHRTGLAPNSLQRRLSALRAYFQWESSDTGQRRNPALAVQAPRKRRKLPGTL 121 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 Q V L + + R+ A+ LLY GLR++E ++ +I QS + Sbjct: 122 EADQV-----GVYLRAD-DNDPLQLRDLAMAELLYSSGLRLAELRAVNIHDIDRSQSLIS 175 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 + GKG K R VP+ +AI Y P + + LF RG+ ++ Q I+ Sbjct: 176 VTGKGSKTRTVPVGRIAIEAIDAYLPHRPTPTSAADEQALFVSGRGRRISERSIQARIQL 235 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 L + GL H LRHSFA+HLL + GDLR++Q +LGH +STTQIYT+++ ++ Sbjct: 236 LAQRNGLGRDVHPHMLRHSFASHLLESSGDLRAVQELLGHSDISTTQIYTHLDFQH---- 291 Query: 310 MMEIYDQTHPSITQKDKKN 328 + ++YD HP ++ +N Sbjct: 292 LAKVYDGAHPRARKRKDEN 310 >gi|169630285|ref|YP_001703934.1| site-specific tyrosine recombinase XerC [Mycobacterium abscessus ATCC 19977] gi|169242252|emb|CAM63280.1| Tyrosine recombinase XerC [Mycobacterium abscessus] Length = 304 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 87/302 (28%), Positives = 137/302 (45%), Gaps = 12/302 (3%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 + ++L +ERG S T ++Y D L+ E T+ LS +R+++ + Sbjct: 11 EFAEHLALERGRSVHTQRAYRGDLTLLFDHLSASNPEA----TLADLSLPVLRSWLGAQA 66 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q ++ R S +K F + +R + + ++ K +LP L + QA Sbjct: 67 RQGAARSTVARRTSAVKIFTAWATRRGLLPTDPAIRLQQPKSRRTLPAVLRQDQAAAA-- 124 Query: 140 NVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 H+ E A R+ I+ +LY G+R+SE L +I + LR+ GKGDK R Sbjct: 125 MEAAHSGAEQDDPMALRDRLIVEMLYATGIRVSELCGLDIDDIDRPRKVLRVLGKGDKER 184 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 VP A+ + D L + L G RG+ ++P + + Q + Sbjct: 185 TVPFGDPAADALSAWLDRGRPHLAVPASGAALLLGARGRRVDPRQVRTVVHQTMSAVPGA 244 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 H LRHS ATHLL G DLR +Q +LGH L+TTQ+YT+V + ++DQ Sbjct: 245 PDIGPHGLRHSAATHLLEGGADLRVVQELLGHSTLATTQLYTHVTVAR----LRAVHDQA 300 Query: 318 HP 319 HP Sbjct: 301 HP 302 >gi|53804979|ref|YP_113355.1| integrase/recombinase XerC [Methylococcus capsulatus str. Bath] gi|53758740|gb|AAU93031.1| integrase/recombinase XerC [Methylococcus capsulatus str. Bath] Length = 304 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 86/295 (29%), Positives = 142/295 (48%), Gaps = 18/295 (6%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGD 85 + R S+ T +Y D F + + + + + IRA++ R + ++ Sbjct: 16 LARRASRHTHAAYRRDLCAFHAYC-----DSVNLAGWADVDAARIRAYVGTRHHRGELSA 70 Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 RSL+R L+ I+ F L K+++ + +R + LPR L+ L+D Sbjct: 71 RSLQRLLAAIRGFFDDLLKKRLLDVNPARAVRPPRSGRRLPRLLDVDAVAGLLD------ 124 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLP 204 + ++ R+ A+ L Y GLR+SE + L ++ S +GKG K R VP+ Sbjct: 125 APADDRLETRDRAMWELFYSSGLRLSELVGLDVVDVDFGAGSVFVRKGKGGKARYVPVGA 184 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 +AI + + L Q LF +G+ + P + + + R LGL H Sbjct: 185 KALEAIGAWLEARRV-LTGAGQPALFLSRQGRRIAPRTVEMRLERWRAKLGLSERVHPHM 243 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LRHSFA+H+L GDLR++Q +LGH L+TTQIYT+V+ + + +YDQ+HP Sbjct: 244 LRHSFASHMLEASGDLRAVQELLGHATLATTQIYTHVDFQR----LAAVYDQSHP 294 >gi|205373364|ref|ZP_03226168.1| tyrosine recombinase xerC [Bacillus coahuilensis m4-4] Length = 250 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 83/254 (32%), Positives = 124/254 (48%), Gaps = 9/254 (3%) Query: 66 LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 + Y + R +++ +K ++ R +S +KSF K+L K E+ + + K+ L Sbjct: 4 IEYLDARLYLTDLYDKKYARSTVSRKVSSLKSFYKFLTKEDKLDENPFSLVFHPKQEKRL 63 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 P E++ L D T D RN A+L LLY G+R+SE +L+ ++I Sbjct: 64 PNFFYEEEIERLFDACKGDT-----HKDIRNLALLELLYATGIRVSECSNLSLKDIDFSF 118 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245 T+ + GKG K R VP +AI Y D L LF ++G PL + Sbjct: 119 HTVLVTGKGRKERYVPFGTYASEAIKRYLDHTRHVLVKGEHQQLFVNLKGGPLTDRGIRH 178 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + + L H LRH+FATHLLSNG DLRS+Q +LGH LS+TQ YT+V ++ Sbjct: 179 ILNDVISRASLTHKIHPHMLRHTFATHLLSNGADLRSVQELLGHSHLSSTQTYTHVTKEH 238 Query: 306 GGDWMMEIYDQTHP 319 + + Y HP Sbjct: 239 ----LRKTYLSHHP 248 >gi|300934030|ref|ZP_07149286.1| integrase/recombinase [Corynebacterium resistens DSM 45100] Length = 276 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 118/227 (51%), Gaps = 7/227 (3%) Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 I+S + ++ K+ + + + K+ +S+P+AL +Q +L+D +D Sbjct: 57 IRSLHDFGEREKLLPSNVAVTVPVPKRGSSIPKALTVEQVSSLLDAT--PNDAAASLVDI 114 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ A+L +LY G RISE L+L ++ + + ++GKG K R+VPL +A+ +Y Sbjct: 115 RDRAVLEMLYSTGARISELLALDVDDVDQGERMVLVRGKGAKERLVPLGSPASEALEQYV 174 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 +N LF +RG + + + Q GLP H LRHSFATHLL Sbjct: 175 VRARPAMNKKGSPALFLNMRGGRMGRQSGFKTVMQAAERAGLP-PVNPHALRHSFATHLL 233 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321 G D+R +Q +LGH ++TTQIYT V + D + E++ +HP + Sbjct: 234 QGGADVRVVQELLGHSSVATTQIYTKVTA----DHLREMWATSHPRV 276 >gi|187925186|ref|YP_001896828.1| site-specific tyrosine recombinase XerD [Burkholderia phytofirmans PsJN] gi|187716380|gb|ACD17604.1| tyrosine recombinase XerD [Burkholderia phytofirmans PsJN] Length = 311 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 88/296 (29%), Positives = 144/296 (48%), Gaps = 17/296 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E GLS+ TL +Y D R F +LA ++ T S ++ A+ + RR K Sbjct: 30 LWLEHGLSRNTLDAYRRDLRLFCEWLA--QSRNASLDTA---SEADLNAYSAARRKDK-- 82 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S R LS + + + + T + +R+ K+ P L+E Q L+ ++ Sbjct: 83 STSANRRLSVFRRYYGWAVREHRTKVDPTVRIRSAKQPPRFPSTLSEAQVEALLGAPDIN 142 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 T+ + R+ +L L+Y GLR++E ++L + ++ +R+ GKG K R++P Sbjct: 143 TA-----LGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVMGKGSKERLIPFGE 197 Query: 205 SVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 I Y + P L LF R + + F I++ G+ + H Sbjct: 198 EAHSWIERYLREARPALLGARATDALFVTNRAEGMTRQQFWNIIKRHAVVAGVHAPLSPH 257 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 TLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V + + ++ Q HP Sbjct: 258 TLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARER----LKSLHAQHHP 309 >gi|238892411|ref|YP_002917145.1| site-specific tyrosine recombinase XerC [Klebsiella pneumoniae NTUH-K2044] gi|262040877|ref|ZP_06014103.1| tyrosine recombinase XerC [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|329997490|ref|ZP_08302792.1| tyrosine recombinase XerC [Klebsiella sp. MS 92-3] gi|238544727|dbj|BAH61078.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259041766|gb|EEW42811.1| tyrosine recombinase XerC [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328539058|gb|EGF65097.1| tyrosine recombinase XerC [Klebsiella sp. MS 92-3] Length = 300 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 89/299 (29%), Positives = 150/299 (50%), Gaps = 19/299 (6%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L++L +ER LS +TL +Y+ RQ +A E +++ Q ++R+F + R Sbjct: 14 LRHLGVERQLSPITLLNYQ---RQLDALIALADEA--GLKSWSQCDAAQVRSFAVRSRRA 68 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 +G SL LS ++SF +L + + + + K LP+ ++ L+D Sbjct: 69 GLGPASLALRLSALRSFFDWLVGQGELSANPAKGIAAPKIPRHLPKNIDVDDVNRLLDID 128 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 L + R+ A+L ++YG GLR+SE ++L +++ + + + GKG K R +P Sbjct: 129 L------NDPLAVRDRAMLEVMYGAGLRLSELVNLDIKHLDLESGEVWVMGKGSKERRLP 182 Query: 202 LLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 + + I + DL F + + LF GK ++ Q+ + GL Sbjct: 183 IGRNAVAWIEHWLDLRGLFGTDDD---ALFLSKLGKRISARNVQKRFAEWGIKQGLNSHV 239 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ + +YD HP Sbjct: 240 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHP 294 >gi|261364802|ref|ZP_05977685.1| tyrosine recombinase XerC [Neisseria mucosa ATCC 25996] gi|288566830|gb|EFC88390.1| tyrosine recombinase XerC [Neisseria mucosa ATCC 25996] Length = 299 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/297 (27%), Positives = 146/297 (49%), Gaps = 17/297 (5%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87 ++G S TL +Y D + + L + E T + L+ + A + + Q + +R+ Sbjct: 19 QQGKSAHTLSAYGRDLTELVRLLTEGSSE-----TAQDLTRRDFVAALKRLSQQGLSERT 73 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 L R LS + + +L + + +N++ + LP+AL +++ ++DN Sbjct: 74 LARKLSAWRQYCGWLVQSSMMDNDPTVNLKAPRLPERLPKALPQEELNHMLDNTPADDG- 132 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207 + R+ A+ L+YG GLR+SE L +++ D+ + + GKG K R VPL Sbjct: 133 ----LAVRDHALFELMYGSGLRLSEIHGLDLGDVLLDEGWVSVTGKGRKERQVPLSGKSV 188 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 +A+ Y + + + LF G G L Q+ ++ G + H +RH Sbjct: 189 EALRAY---LSERVAADGETALFTGKNGTRLGQRQIQKRLQAWAVQQGSGQHISPHMMRH 245 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 S+A+HLL + D+R++Q +LGH LSTTQIYT ++ D + ++YD+ HP +K Sbjct: 246 SYASHLLQSSRDIRAVQELLGHSNLSTTQIYTKLDF----DHLAKVYDEGHPRAKRK 298 >gi|333029569|ref|ZP_08457630.1| Tyrosine recombinase xerC [Bacteroides coprosuis DSM 18011] gi|332740166|gb|EGJ70648.1| Tyrosine recombinase xerC [Bacteroides coprosuis DSM 18011] Length = 305 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 93/297 (31%), Positives = 155/297 (52%), Gaps = 24/297 (8%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +LL+ N+ Q L++E+ LS TL +Y D + + + +EK+++ TI + + ++ Sbjct: 10 QLLRVINNYRQYLKLEKSLSPNTLDAYLSDLDKLV---KYANDEKLSLFTI---TLSNLQ 63 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 FI+ I RS R +SGIKSF +L + ++ + + K +P L Sbjct: 64 NFIANLHDIGIHPRSQARIISGIKSFYHFLLLEEYIEDNPADLLDSPKIGFKVPEVLTLA 123 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + +++ V + T+ RN AIL LY CGLR+SE +L + D + + G Sbjct: 124 EIDAIINVVDVSTAE-----GQRNRAILETLYSCGLRVSELTNLKISKLYFDDGYVIVDG 178 Query: 193 KGDKIRIVPLLPSVRKAILE--YYDLCPFDLNLNI-----QLPLFRGIRGKPLNPGVFQR 245 KG K R+VP+ +AI E YY + D ++I + LF RG L+ + Sbjct: 179 KGSKQRLVPI---SNRAIQEIKYYLM---DRGMSIIKKGSEDTLFLNRRGTGLSRVMIFN 232 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 +++ + + + HT RHSFATHLL G +LR+IQS+LGH ++TT+IYT+++ Sbjct: 233 IVKKYSEEAEISKNVSPHTFRHSFATHLLEGGANLRAIQSMLGHESITTTEIYTHLD 289 >gi|242237692|ref|YP_002985873.1| site-specific tyrosine recombinase XerC [Dickeya dadantii Ech703] gi|242129749|gb|ACS84051.1| tyrosine recombinase XerC [Dickeya dadantii Ech703] Length = 302 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 88/307 (28%), Positives = 151/307 (49%), Gaps = 35/307 (11%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L+ L +ER LS LTL+SY Q + + T E+ I R+L +R+ ++ + Sbjct: 15 LRYLRVERRLSPLTLRSY-----QHQLQVIASTLEESGISDWRRLDAAGVRSLAARGKRD 69 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ-----ALT 136 + SL + LS ++SFL +L R + + + K LP+ ++ + A+ Sbjct: 70 GLSAASLAQRLSALRSFLDWLVSRGELSANPARGVSAPKAGRHLPKNMDVDETDRLLAID 129 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L D + + R+ A+L ++YG GLR++E + L +++ + + GKG K Sbjct: 130 LNDPLAV-----------RDRAMLEVMYGAGLRLAELVGLDCRHLDLADGEIWVLGKGSK 178 Query: 197 IRIVPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 R +P+ + + + D+ P D +F RGK ++ Q+ + Sbjct: 179 ERRLPIGATAVAWLRRWLDVREIYAPDDD------AVFVSSRGKRISMRNVQKRFAEWGV 232 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 G+ H LRHSFATH+L + GDLR++Q +LGH LSTTQIYT+++ ++ + Sbjct: 233 KQGISSHVHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LAS 288 Query: 313 IYDQTHP 319 +YD HP Sbjct: 289 VYDAAHP 295 >gi|90407171|ref|ZP_01215359.1| tyrosine recombinase [Psychromonas sp. CNPT3] gi|90311747|gb|EAS39844.1| tyrosine recombinase [Psychromonas sp. CNPT3] Length = 298 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 97/307 (31%), Positives = 155/307 (50%), Gaps = 27/307 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +L +ERGLS+ TL SY D FL + + + + SY ++ + S R Sbjct: 9 FLDSLWLERGLSQNTLASYRFDLCLVQNFL------EANNKVLAEASYQDLCDYFSFRLY 62 Query: 81 QKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 I + S R +S ++ + ++L + K+ + +++ K LP++L+E + V Sbjct: 63 SDIAYKNSSTARLMSALRRYYQFLCREKLRDDDPSAKLQSPKTLKPLPKSLSESE----V 118 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D LL + + R+ A+L LLY GLR+SE + L Q + Q +R+ GKG+K R Sbjct: 119 DG-LLSAPDLSDSVQFRDKAMLELLYATGLRVSELVGLQMQELNLQQGVVRVTGKGEKTR 177 Query: 199 IVPLLPSVRKAILEYYDLCPFDL----NLNIQLPLFRGIRGKPLNPGVFQRYIR--QLRR 252 +VPL + Y + +L + +I LF RG + F I+ LR Sbjct: 178 LVPLGEEANYWVDRYIEEVRPELLKGRSCDI---LFPSRRGSQMVRQTFWHRIKYYALRC 234 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 + L + H LRH+FATHLL+ G DLR +Q +LGH LS+TQIYT++ D + E Sbjct: 235 NIDKTL-ISPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSSTQIYTHI----AQDRLKE 289 Query: 313 IYDQTHP 319 ++ HP Sbjct: 290 LHKMHHP 296 >gi|218767552|ref|YP_002342064.1| putative integrase/recombinase [Neisseria meningitidis Z2491] gi|34223069|sp|Q9JW14|XERC_NEIMA RecName: Full=Tyrosine recombinase xerC gi|121051560|emb|CAM07858.1| putative integrase/recombinase [Neisseria meningitidis Z2491] gi|319409816|emb|CBY90124.1| tyrosine recombinase XerC [Neisseria meningitidis WUE 2594] Length = 305 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 87/308 (28%), Positives = 148/308 (48%), Gaps = 17/308 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI--TIQTIRQLSYTEIRAFISKR 78 +L+N+ + G S+ T+ +Y D + LA E Q + Q +T +S+R Sbjct: 13 YLENI-VREGKSEHTVAAYRRDLEELFALLAQMPSEDAGGVPQGLSQRDFTAALRRLSQR 71 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + R+L R LS + + +L KR + +++ K+ +P+AL ++ ++ Sbjct: 72 ---GLNARTLARKLSSWRQYCAWLVKRGLLHTDPTADIKPPKQPERVPKALPQEWLNRML 128 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + + R+ A+ L+YG GLR+SE L ++ D++ + + GKG K R Sbjct: 129 DLPV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQR 184 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VPL +A+ Y P + LF G G L+ Q+ + Q G Sbjct: 185 QVPLTGKSVEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGR 241 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + H +RHS+A HLL D+R++Q +LGH LSTTQIYT ++ D + +YD+ H Sbjct: 242 HVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAH 297 Query: 319 PSITQKDK 326 P ++D+ Sbjct: 298 PRAKRQDE 305 >gi|327188713|gb|EGE55912.1| tyrosine site-specific integrase/recombinase protein [Rhizobium etli CNPAF512] Length = 317 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 98/322 (30%), Positives = 157/322 (48%), Gaps = 27/322 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR--QLSYTEIRAFIS 76 +++L+ + ERG + TLQSYE D FL ++IR + + ++ A+++ Sbjct: 10 ESFLEMMSAERGAAANTLQSYERDLDDIRSFL--------NGRSIRLTEAASADLSAYLA 61 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 +Q S R L+ ++ F K+L I T+ + KK LP+ + ++ Sbjct: 62 SLASQGFKPSSQARRLAAMRQFYKFLYAEGIRTDDPTGVLDAPKKGRPLPKTMGVEEVGR 121 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLL--YGCGLRISEALSLTPQNIMDDQST-LRIQGK 193 L+ R + L Y G+R+SE +SL P ++D + L I+GK Sbjct: 122 LLSQAQTEADDPAPGQLQRLRMLALLELLYATGMRVSELVSL-PAGVLDQEGRFLMIRGK 180 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNP-GVFQRYI 247 G+K R+VPL S KA+ Y L + N + P LF + P VF R + Sbjct: 181 GNKERLVPLSQSAIKALKSYGRLLAAE-NAAAKEPQESPFLFSAASKEGYLPRQVFARDL 239 Query: 248 RQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 + L GL P + H +RH+FA+HLL+NG DLR +Q +LGH +STTQIYT+V + Sbjct: 240 KNLAIRAGLTPSLISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER- 298 Query: 307 GDWMMEIYDQTHPSITQKDKKN 328 ++ QTH + ++ KK+ Sbjct: 299 ----LQQLVQTHHPLAKQAKKH 316 >gi|59800504|ref|YP_207216.1| putative site-specific recombinase [Neisseria gonorrhoeae FA 1090] gi|194097632|ref|YP_002000668.1| putative site-specific recombinase [Neisseria gonorrhoeae NCCP11945] gi|239998167|ref|ZP_04718091.1| putative site-specific recombinase [Neisseria gonorrhoeae 35/02] gi|240013349|ref|ZP_04720262.1| putative site-specific recombinase [Neisseria gonorrhoeae DGI18] gi|240015794|ref|ZP_04722334.1| putative site-specific recombinase [Neisseria gonorrhoeae FA6140] gi|240079931|ref|ZP_04724474.1| putative site-specific recombinase [Neisseria gonorrhoeae FA19] gi|240112137|ref|ZP_04726627.1| putative site-specific recombinase [Neisseria gonorrhoeae MS11] gi|240114883|ref|ZP_04728945.1| putative site-specific recombinase [Neisseria gonorrhoeae PID18] gi|240117087|ref|ZP_04731149.1| putative site-specific recombinase [Neisseria gonorrhoeae PID1] gi|240120422|ref|ZP_04733384.1| putative site-specific recombinase [Neisseria gonorrhoeae PID24-1] gi|240122724|ref|ZP_04735680.1| putative site-specific recombinase [Neisseria gonorrhoeae PID332] gi|240124914|ref|ZP_04737800.1| putative site-specific recombinase [Neisseria gonorrhoeae SK-92-679] gi|254492944|ref|ZP_05106115.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 1291] gi|260441302|ref|ZP_05795118.1| putative site-specific recombinase [Neisseria gonorrhoeae DGI2] gi|268594018|ref|ZP_06128185.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 35/02] gi|268596071|ref|ZP_06130238.1| tyrosine recombinase xerC [Neisseria gonorrhoeae FA19] gi|268598196|ref|ZP_06132363.1| tyrosine recombinase xerC [Neisseria gonorrhoeae MS11] gi|268600541|ref|ZP_06134708.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID18] gi|268602774|ref|ZP_06136941.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID1] gi|268681323|ref|ZP_06148185.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID332] gi|268683494|ref|ZP_06150356.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-92-679] gi|291044658|ref|ZP_06570367.1| tyrosine recombinase xerC [Neisseria gonorrhoeae DGI2] gi|293397766|ref|ZP_06641972.1| tyrosine recombinase XerC [Neisseria gonorrhoeae F62] gi|75356483|sp|Q5FAI3|XERC_NEIG1 RecName: Full=Tyrosine recombinase xerC gi|254799349|sp|B4RNW5|XERC_NEIG2 RecName: Full=Tyrosine recombinase xerC gi|59717399|gb|AAW88804.1| putative site-specific recombinase [Neisseria gonorrhoeae FA 1090] gi|193932922|gb|ACF28746.1| putative site-specific recombinase [Neisseria gonorrhoeae NCCP11945] gi|226511984|gb|EEH61329.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 1291] gi|268547407|gb|EEZ42825.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 35/02] gi|268549859|gb|EEZ44878.1| tyrosine recombinase xerC [Neisseria gonorrhoeae FA19] gi|268582327|gb|EEZ47003.1| tyrosine recombinase xerC [Neisseria gonorrhoeae MS11] gi|268584672|gb|EEZ49348.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID18] gi|268586905|gb|EEZ51581.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID1] gi|268621607|gb|EEZ54007.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID332] gi|268623778|gb|EEZ56178.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-92-679] gi|291011552|gb|EFE03548.1| tyrosine recombinase xerC [Neisseria gonorrhoeae DGI2] gi|291611712|gb|EFF40781.1| tyrosine recombinase XerC [Neisseria gonorrhoeae F62] gi|317163457|gb|ADV06998.1| putative site-specific recombinase [Neisseria gonorrhoeae TCDC-NG08107] Length = 305 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 84/306 (27%), Positives = 146/306 (47%), Gaps = 13/306 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+N+ + G S+ T+ +Y D + LA E + LS + A + + Sbjct: 13 YLENI-VREGKSEHTVAAYRRDLEELFALLAQMPSEDAG-GVPQDLSRRDFTAALRRLSQ 70 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + R+L R LS + + +L KR + +++ K+ +P+AL ++ ++D Sbjct: 71 RGLDGRTLARKLSAWRQYCAWLVKRGLMRADPTADIKPPKQPERVPKALPQEWLNRMLDL 130 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + + R+ A+ L+YG GLR+SE L ++ D++ + + GKG K R V Sbjct: 131 PVDGGDP----LAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQV 186 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 PL +A+ Y P + LF G G L+ Q+ + G Sbjct: 187 PLTGKSVEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLESWAAQYGDGRHV 243 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 + H +RHS+A HLL D+R++Q +LGH LSTTQIYT ++ D + +YD+ HP Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAHPR 299 Query: 321 ITQKDK 326 ++D+ Sbjct: 300 AKRQDE 305 >gi|152972799|ref|YP_001337945.1| site-specific tyrosine recombinase XerC [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150957648|gb|ABR79678.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 300 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 89/299 (29%), Positives = 150/299 (50%), Gaps = 19/299 (6%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L++L +ER LS +TL +Y+ RQ +A E +++ Q ++R+F + R Sbjct: 14 LRHLGVERQLSPITLLNYQ---RQLDALIALADEA--GLKSWSQCDAAQVRSFAVRSRRA 68 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 +G SL LS ++SF +L + + + + K LP+ ++ L+D Sbjct: 69 GLGPASLALRLSALRSFFDWLVGQGELSANPAKGIAAPKIPRHLPKNIDVDDVNRLLDID 128 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 L + R+ A+L ++YG GLR+SE ++L +++ + + + GKG K R +P Sbjct: 129 L------NDPLAVRDRAMLEVMYGAGLRLSELVNLDIKHLDLESGEVWVMGKGSKERRLP 182 Query: 202 LLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 + + I + DL F + + LF GK ++ Q+ + GL Sbjct: 183 IGRNAVAWIEHWLDLRGLFGTDDD---ALFLSKLGKRISARNVQKRFAEWGIRQGLNSHV 239 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ + +YD HP Sbjct: 240 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHP 294 >gi|163857876|ref|YP_001632174.1| site-specific tyrosine recombinase XerD [Bordetella petrii DSM 12804] gi|163261604|emb|CAP43906.1| integrase/recombinase [Bordetella petrii] Length = 310 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 84/279 (30%), Positives = 133/279 (47%), Gaps = 10/279 (3%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEE--KITIQTIRQLSYTEIRAFISKRRTQKIG 84 +E GL+ TL +Y D F +L E T +R +I A+ + R Sbjct: 22 LEDGLAANTLAAYRRDLSAFARWLETPAEHGGAATASLLRDAGTGDIEAWFAARHADSRA 81 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 + R L+ ++ F + + T L + K+ +P+ L+E Q L+ L+ Sbjct: 82 T-TANRRLAALRRFYAWALREHRTGHDPCLTLSAAKQPPRMPKTLSEAQVDALLRAPDLN 140 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLL 203 T+ R+ A+L LY GLR+SE +++ + ++ +R+ GKG K R+VPL Sbjct: 141 TARGL-----RDRAMLETLYATGLRVSELVNIKVLEVSLNEGVVRVVMGKGGKDRLVPLG 195 Query: 204 PSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 I Y DL + LF R +P+ F + I++ G+ + Sbjct: 196 AEAAHWIDRYLKEARPDLAGARVSDALFLTARAQPMTRQAFWQLIKKYAVVSGVRAPLSP 255 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 H LRH+FATHLL++G DLR +Q +LGH +STTQIYT+V Sbjct: 256 HVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHV 294 >gi|239833075|ref|ZP_04681404.1| tyrosine recombinase XerD [Ochrobactrum intermedium LMG 3301] gi|239825342|gb|EEQ96910.1| tyrosine recombinase XerD [Ochrobactrum intermedium LMG 3301] Length = 313 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 88/295 (29%), Positives = 133/295 (45%), Gaps = 20/295 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +N+L+ + ERG ++ TL+SY D +A + + +R+ I Sbjct: 10 ENFLEMMSAERGAARNTLESYRRDLEAVAEAMAARG------VNLAEAGADHVRSAIDAM 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S R LS ++ F ++L + + KK LP+ ++ + L+ Sbjct: 64 AAEGFAATSQARRLSALRQFFRFLYSEGYRQDDPTGTVDAPKKQKPLPKIMSVENVTRLL 123 Query: 139 DNVLLHTSHETKWIDARNSAILYL--------LYGCGLRISEALSLTPQNIMDDQSTLRI 190 D +L D + + L LY GLR+SE + L D L + Sbjct: 124 DRAVLEADEPGGPADLTSDRLRALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLV 183 Query: 191 QGKGDKIRIVPLLPSVRKAI---LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 +GKG K R+VPL P R+A+ L D P + P F L VF R + Sbjct: 184 RGKGSKERMVPLSPKAREALQRFLALRDSLPGSDDNPWLFPAFS--ESGHLARQVFAREL 241 Query: 248 RQLRRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + L GL S + H LRH+FA+HLL NG DLR++Q +LGH +STTQIYT+V Sbjct: 242 KGLAARAGLSASAVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHV 296 >gi|269137482|ref|YP_003294182.1| site-specific recombinase XerC [Edwardsiella tarda EIB202] gi|267983142|gb|ACY82971.1| site-specific recombinase XerC [Edwardsiella tarda EIB202] gi|304557555|gb|ADM40219.1| Tyrosine recombinase XerC [Edwardsiella tarda FL6-60] Length = 303 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 95/317 (29%), Positives = 153/317 (48%), Gaps = 23/317 (7%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 +LPE +S + +LQ + +ER LS T+++Y RQ A E + Sbjct: 2 TSLPEALSTPV----AAFLQMMRVERQLSPRTVETYR---RQLAASAALLLEGGLCDWAA 54 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 L T +R+ +++ R Q + SL LS ++SFL + R T + + ++ Sbjct: 55 --LDTTRVRSLVARSRRQGLEPASLALRLSALRSFLDWQVSRGALTANPAKGVAAPRQGR 112 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 LP+ L+ L+D E + R+ A+L ++YG GLR+SE + L +++ Sbjct: 113 HLPKNLDVDDVNRLLD------IDEGDTLAVRDRAMLEVMYGGGLRLSELVGLDCRHVDL 166 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGV 242 + + GKG K R LP R+A+ L+L Q LF G ++P Sbjct: 167 TTGEVWVLGKGSKER---RLPVGREAVRWLQTWLSLRLSLQPQDDALFVSRLGGRISPRS 223 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 Q+ + G+ H LRHSFATH+L + GDLR++Q +LGH LSTTQIYT+++ Sbjct: 224 VQKRFAEWGVKQGVTSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLD 283 Query: 303 SKNGGDWMMEIYDQTHP 319 ++ + +YD HP Sbjct: 284 FQH----LATVYDAAHP 296 >gi|313681427|ref|YP_004059165.1| integrase family protein [Sulfuricurvum kujiense DSM 16994] gi|313154287|gb|ADR32965.1| integrase family protein [Sulfuricurvum kujiense DSM 16994] Length = 282 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 95/321 (29%), Positives = 157/321 (48%), Gaps = 49/321 (15%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 EL ++++ +L+ L+ RG S LT++SY + L F E + ++ +R Sbjct: 5 ELYRQKEAFLKYLDTIRGYSPLTIRSYNDAIDEMLTF-----AEMDASSNLLSINLMPLR 59 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 IS + + I + LS I+SF+KYL+ + T E + ++K +LP+ + + Sbjct: 60 LKISSLKAKSIAAK-----LSAIRSFVKYLRSQGKTVE--LRGDESIKTPKTLPKPITHE 112 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 Q L H ++ + + + + LLY GLRISE L +I + S RI G Sbjct: 113 QIL-----------HALQYAEPQAALAITLLYTMGLRISELTHLRLSDISEGWS--RIHG 159 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCP-----FDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 KG K R +P++ ++R + EY + P F+L +G+ L+ + I Sbjct: 160 KGSKERDIPMMDNIRTMVQEYQKINPSREYVFEL------------KGEKLSENSLRYTI 207 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 ++ + + L T H LRH++AT LL+NG + + +LGH ++TTQIYT K G Sbjct: 208 --IKAFAKVGLKVTPHQLRHTYATELLNNGARIADVSELLGHASMATTQIYT----KLGN 261 Query: 308 DWMMEIYDQTHP-SITQKDKK 327 ME Y Q+HP T +D K Sbjct: 262 ALKMEHYLQSHPLCQTHEDSK 282 >gi|209521010|ref|ZP_03269744.1| tyrosine recombinase XerD [Burkholderia sp. H160] gi|209498544|gb|EDZ98665.1| tyrosine recombinase XerD [Burkholderia sp. H160] Length = 318 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/296 (29%), Positives = 140/296 (47%), Gaps = 17/296 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E GLS+ TL +Y D R F +LA + S ++ A+ + R+ K Sbjct: 37 LWLEHGLSRNTLDAYRRDLRLFCEWLAHTRNASLDTA-----SEADLTAYSAARQQDKAT 91 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S R LS + + + + L +R+ K+ P L+E Q L+ + Sbjct: 92 --SANRRLSVFRRYYAWAVREHRAAADPTLRIRSAKQPPRFPSTLSEAQVEALLGAPDID 149 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 T + R+ +L L+Y GLR++E ++L + ++ +R+ GKG K R++P Sbjct: 150 TP-----LGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVTGKGSKERLIPFGE 204 Query: 205 SVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 I Y + P L LF R + + F I++ + G+ + H Sbjct: 205 EAHAWIERYLREARPALLGPRAADALFVTARAEGMTRQQFWNIIKRHAQVAGVHAPLSPH 264 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 TLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V + + ++ Q HP Sbjct: 265 TLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARER----LKSLHAQHHP 316 >gi|92116109|ref|YP_575838.1| tyrosine recombinase XerD [Nitrobacter hamburgensis X14] gi|91799003|gb|ABE61378.1| tyrosine recombinase XerD subunit [Nitrobacter hamburgensis X14] Length = 319 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 97/302 (32%), Positives = 146/302 (48%), Gaps = 36/302 (11%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI--QTIRQ-LSYTEIRAFISK 77 +L L E+G TL +Y D FL + +T QT+R L ++R F S Sbjct: 15 FLDMLAAEQGAGDNTLDAYRRDLEDLSAFLTRVGQTFVTAGTQTLRDYLGDLDVRGFKSS 74 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 S+ R LS ++ ++L +I ++ + K+ SLP+ L+ + Sbjct: 75 ---------SVARRLSAMRHLFRFLLSERIRSDDPAAILSGPKRGRSLPKVLS----IAD 121 Query: 138 VDNVLLHTSHETKWIDA---------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 VD +L + DA R +L +LY GLR+SE +SL D + Sbjct: 122 VDRLLACAKAAMETPDASPARRLRAARLYCLLEVLYATGLRVSELVSLPLSAARRDARMI 181 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEY----YDLCPFDLNLNIQ----LPLFRGIRGKPLNP 240 ++GKG+K R+VPL + R+A+ +Y D D + +Q P F G G L Sbjct: 182 VVRGKGNKERLVPLNEASRQAMADYLAAMADRRGADKAVAVQPKWLFPSF-GESGH-LTR 239 Query: 241 GVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 F R +++L GL P + H LRH+FA+HLL NG DLR +Q++LGH +STTQIYT Sbjct: 240 QHFARELKELAAAAGLAPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYT 299 Query: 300 NV 301 +V Sbjct: 300 HV 301 >gi|46201486|ref|ZP_00208119.1| COG4974: Site-specific recombinase XerD [Magnetospirillum magnetotacticum MS-1] Length = 305 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 83/292 (28%), Positives = 143/292 (48%), Gaps = 25/292 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L+ +++ERG S TL +Y D F FL + + + + A+I+++ Sbjct: 10 ESFLEMMQVERGASPNTLDAYGRDLADFAEFLDGRGQSPLNAEG------RSVAAYIARQ 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + R+ R LS +K F + ++ + N+ + LP+ L +++ L+ Sbjct: 64 AEIGMAARTQARRLSCLKQFYGFAFAERLRPDDPTANIDAPRLGRPLPKYLRKEEVTALL 123 Query: 139 DNVLLHTSHETKWIDARN----SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 D + ++ R+ +A++ LY GLR+SE +SL + D + L ++GKG Sbjct: 124 DAA--------RALEGRDGILMTALMETLYATGLRVSELVSLPLSAVARDPNVLVVRGKG 175 Query: 195 DKIRIVPLLPSVRKAIL----EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 K R+VPL R A++ E + P P G G G F + + + Sbjct: 176 SKERMVPLSDPARAALIAWKAERETMVPKSRPSRWLFP-SSGRLGHLTRSG-FAKMLARA 233 Query: 251 RRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 GL P + H LRHSFA+HLL+ G DLRS+Q +LGH ++TT+IYT++ Sbjct: 234 AVLAGLDPFKVSPHVLRHSFASHLLAGGADLRSVQEMLGHADIATTEIYTHL 285 >gi|261856623|ref|YP_003263906.1| tyrosine recombinase XerD [Halothiobacillus neapolitanus c2] gi|261837092|gb|ACX96859.1| tyrosine recombinase XerD [Halothiobacillus neapolitanus c2] Length = 311 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 93/300 (31%), Positives = 147/300 (49%), Gaps = 16/300 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 ++ L +E GLSK T +Y D R LA ++ ++ + ++S ++ + +R + Sbjct: 25 FINALWLEEGLSKNTQSAYRSDLR-----LAALDWQRAGLR-LNEVSAEDLPRLLGERMS 78 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 RS+ R S +K F +L+++ + T+ + + +LP AL+E + Sbjct: 79 SGQSARSIARLRSSLKRFFGWLRQQNLRTDDPTTALAAPRLPRALPYALSENEV-----E 133 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LL ++ I R+ A+L LLY GLR++E + L I Q LRI GKG+K R+V Sbjct: 134 RLLAAPDVSEPIGLRDRAMLELLYASGLRVTELIGLQFGQINLVQGVLRITGKGNKDRLV 193 Query: 201 PLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ + Y L +F RG + F I+ GL Sbjct: 194 PIGDEAIVWLSRYLREARSGLLGRRESANVFVTERGDGMTRQAFWYRIKHHALAAGLARL 253 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + + ++ Q HP Sbjct: 254 PSPHTLRHAFATHLLNHGADLRVLQMLLGHADLSTTQIYTHVATTR----LKALHAQHHP 309 >gi|198277388|ref|ZP_03209919.1| hypothetical protein BACPLE_03600 [Bacteroides plebeius DSM 17135] gi|198269886|gb|EDY94156.1| hypothetical protein BACPLE_03600 [Bacteroides plebeius DSM 17135] Length = 303 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 90/287 (31%), Positives = 146/287 (50%), Gaps = 20/287 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 + Q L++E+ LS T+++Y D + FL E I +++ + F + R Sbjct: 13 YRQYLKLEKSLSANTVEAYLTDLDKLFAFLEL---ESIHFT---EVTLENLETFSAGLRD 66 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 I RS R LSGI+SF ++L + + + + LP L ++ +D Sbjct: 67 IGIHPRSQARILSGIRSFFRFLLLEDYIQQDPSELLESPQIGKHLPDVLTVEE----IDR 122 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 ++ T+ RN AIL LY CGLR+SE +L ++ + ++++GKG K R+V Sbjct: 123 LIGSIDRSTRE-GQRNRAILETLYSCGLRVSELCNLKLSDLYLKEKFIKVEGKGSKQRLV 181 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLG 255 P+ P +AI E P D N + P +F GK ++ + I++L +G Sbjct: 182 PISP---RAIHELELYFP-DRNEGLIKPGYEDFVFISRFGKNISRIMVFHIIKELAEQIG 237 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 L + + HT RHSFATHLL G +LR+IQ +LGH + TT+IYT+++ Sbjct: 238 LKKTISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHLD 284 >gi|259415887|ref|ZP_05739807.1| phage integrase [Silicibacter sp. TrichCH4B] gi|259347326|gb|EEW59103.1| phage integrase [Silicibacter sp. TrichCH4B] Length = 317 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 94/316 (29%), Positives = 150/316 (47%), Gaps = 24/316 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +L E G + TL +Y D R ++A + Q+ ++I A++ Sbjct: 13 TFLDAQAAELGAAHNTLLAYGRDLRNVTAWMAHKG------TSFAQMRQSDIEAYLISCD 66 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + + + R LS IK ++ + ++ L ++ + SLP+ L+E + VD Sbjct: 67 AEGLSRATRARRLSAIKQIYRFAFEEGWRQDNPALQIKGPGREKSLPKTLDENE----VD 122 Query: 140 NVL--LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 +L T T+ RN+ ++ LLY G+R+SE +SL D + L I GKG K Sbjct: 123 RLLGAARTVGRTEADRLRNTCLMELLYATGMRVSELVSLPVSAARGDPNMLLILGKGGKE 182 Query: 198 RIVPLLPSVRKAILEYYDL--CPFDLNLNIQLPLFRGIRGKPLNPGVFQRY-----IRQL 250 R+VPL P R A+ + ++ D R + G R+ I++L Sbjct: 183 RMVPLSPPARMALSTWIEVRDAVEDKREGQGHKASRFLFPSRSKEGHLTRHRFYLLIKEL 242 Query: 251 RRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 G+ P T HTLRH+FATHLL NG DLR+IQ++LGH ++TT+IYT+V Sbjct: 243 AVAGGVSPEKVTPHTLRHAFATHLLQNGADLRAIQALLGHADIATTEIYTHVLDAR---- 298 Query: 310 MMEIYDQTHPSITQKD 325 + E+ + HP T+ D Sbjct: 299 LAELVHRHHPLATKDD 314 >gi|254670992|emb|CBA07733.1| site-specific recombinase [Neisseria meningitidis alpha153] Length = 305 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 87/308 (28%), Positives = 148/308 (48%), Gaps = 17/308 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI--TIQTIRQLSYTEIRAFISKR 78 +L+N+ + G S+ T+ +Y D + LA E Q + Q +T +S+R Sbjct: 13 YLENI-VREGKSEHTVAAYRRDLEELFALLAQMPSEAEGGVPQGLSQRDFTAALRRLSQR 71 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + R+L R LS + + +L KR + +++ K+ +P+AL ++ ++ Sbjct: 72 ---GLNARTLARKLSSWRQYCAWLVKRGLMRADPTADIKPPKQPERVPKALPQEWLNRML 128 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + + R+ A+ L+YG GLR+SE L ++ D++ + + GKG K R Sbjct: 129 DLPVDGGDP----LAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQR 184 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VPL +A+ Y P + LF G G L+ Q+ + Q G Sbjct: 185 QVPLTGKSVEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGR 241 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + H +RHS+A HLL D+R++Q +LGH LSTTQIYT ++ D + +YD+ H Sbjct: 242 HVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAH 297 Query: 319 PSITQKDK 326 P ++D+ Sbjct: 298 PRAKRQDE 305 >gi|330444332|ref|YP_004377318.1| site-specific recombinase, phage integrase family [Chlamydophila pecorum E58] gi|328807442|gb|AEB41615.1| site-specific recombinase, phage integrase family [Chlamydophila pecorum E58] Length = 312 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 91/290 (31%), Positives = 144/290 (49%), Gaps = 20/290 (6%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFY----TEEKITIQTIRQ---------LSYTEIRAFI 75 + +S TL++Y D +F F+ + T KIT+ Q L+ IR +I Sbjct: 15 KSVSLHTLRNYSIDFSKFKEFIETHKQLPTTPKITLHMKFQETSDLPLSLLTKDLIRLYI 74 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 S Q R++KR LS +KSF +Y K ++ E N++ K LP ++ +Q Sbjct: 75 SYLIEQGKSKRTIKRRLSTLKSFSRYCLKMQLLFEDPTENIQGPKLPKELPSPISYEQV- 133 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 +L+ +K+ R+ +L L Y GLR+SE ++ Q+I + + +RI GKG Sbjct: 134 ----EILMTMPDVSKYTGLRDRCLLELFYSSGLRLSEITAINRQDIDFEAALIRIFGKGK 189 Query: 196 KIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 K R++P+ P + + Y Y + + Q F G ++P R + + Sbjct: 190 KERVLPVTPCAIRWLHHYLYHSERMSIQKDTQ-AFFLNRFGTRISPRSIDRKFQHYLQLS 248 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 GL + T HT+RH+ ATH L NG DL++IQ++LGH L TT IYT V+ K Sbjct: 249 GLTGNITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTQVSIK 298 >gi|197287151|ref|YP_002153023.1| site-specific tyrosine recombinase XerC [Proteus mirabilis HI4320] gi|227357156|ref|ZP_03841525.1| tyrosine recombinase [Proteus mirabilis ATCC 29906] gi|34222763|sp|O31207|XERC_PROMI RecName: Full=Tyrosine recombinase xerC gi|2645802|gb|AAB87500.1| site-specific recombinase [Proteus mirabilis] gi|194684638|emb|CAR46553.1| tyrosine recombinase [Proteus mirabilis HI4320] gi|227162688|gb|EEI47655.1| tyrosine recombinase [Proteus mirabilis ATCC 29906] Length = 307 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 90/319 (28%), Positives = 155/319 (48%), Gaps = 28/319 (8%) Query: 5 NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64 ++PE +S + ++L +E+ER LS +T+++Y+ RQ + KI ++ Sbjct: 6 DVPETLSLAI----DSFLSYIEVERRLSPVTVENYQ---RQLMTIAQMMVAIKINQWSL- 57 Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 L +R ++K + SL S ++SFL + + + + +R K Sbjct: 58 -LESQHVRMLLAKSHRSGLQPASLALRFSALRSFLDWQVSQGMLAVNPAKGVRTPKSGRH 116 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 LP+ ++ + L+ N+ L + R+ +L ++YG GLR+SE +L +I Sbjct: 117 LPKNMDVDEVSQLM-NIDLKDP-----LSVRDRTMLEVMYGAGLRLSELTNLNINDIDLQ 170 Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNP 240 + +R+ GKG K R VPL + + ++ + P D + I GK L+ Sbjct: 171 EGEVRVLGKGSKERKVPLGRKAVEWLQHWFAMRELYSPEDTAVFISTK-----SGKRLSV 225 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 Q+ GL H LRHSFATHLL + GDLR++Q +LGH LSTTQ+YT+ Sbjct: 226 RSVQKRFELWGVKQGLSSHVNPHKLRHSFATHLLESSGDLRAVQELLGHANLSTTQVYTH 285 Query: 301 VNSKNGGDWMMEIYDQTHP 319 ++ ++ + ++YD HP Sbjct: 286 LDFQH----LAKVYDAAHP 300 >gi|188586009|ref|YP_001917554.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|254799348|sp|B2A335|XERC_NATTJ RecName: Full=Tyrosine recombinase xerC gi|179350696|gb|ACB84966.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 299 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 92/306 (30%), Positives = 153/306 (50%), Gaps = 21/306 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L+ L+ E+ LS T+ +Y D Q F E+ + ++++ IR F++ + Sbjct: 7 DFLEFLKGEKNLSHYTVDNYYKDLTQAENFF----NEQFELYQWDEVTHKHIRHFLAYLK 62 Query: 80 TQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + R LS I+S K+L ++ KI + ++ L + KK LP L+ ++ L+ Sbjct: 63 DKNYEKSTTARKLSAIRSLFKFLTREEKIRSNTSAL-LATPKKERKLPEFLSIEEVEMLI 121 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + + R+ AIL + Y G+R+ E L QN+ L++ GKG+ R Sbjct: 122 N------APGDDPFGLRDKAILEVFYCSGIRLGELWGLDLQNLDLQTGYLKVTGKGNIER 175 Query: 199 IVPLLPSVRKAILEY-YDLCPFDLNLNIQL----PLFRGIRGKPLNPGVFQRYIRQLRRY 253 + PL AI +Y Y+ P L N + LF G ++ +R +++ + Sbjct: 176 LAPLGSFALAAIEDYLYNARPELLKKNKSVENCDALFLNKFGTRISQRSIRRRVKKYVQQ 235 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 + H+LRHSFATHLL G DLR++Q +LGH +STTQIYT+VN M E+ Sbjct: 236 TASEHRVSPHSLRHSFATHLLEGGADLRAVQELLGHVNISTTQIYTHVNQAR----MTEV 291 Query: 314 YDQTHP 319 Y++ HP Sbjct: 292 YNKYHP 297 >gi|152967083|ref|YP_001362867.1| phage integrase family protein [Kineococcus radiotolerans SRS30216] gi|151361600|gb|ABS04603.1| phage integrase family protein [Kineococcus radiotolerans SRS30216] Length = 344 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 89/294 (30%), Positives = 145/294 (49%), Gaps = 22/294 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L +L++ERGLS TL +Y D +++ FLA + Q+ + F+ R Sbjct: 29 DYLAHLQVERGLSPNTLGAYRRDLARYVRFLAARG-----VHDPAQVDEAVVSGFVVALR 83 Query: 80 TQKIGDRSLKRSLSG-----IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 T G L S + ++ + ++L + + + +R LP AL ++ Sbjct: 84 TGADGAAVLTASSAARTASAVRGWHRFLHAEGRSDQDPAVLVRPPTPPRRLPTALTVEEV 143 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL-----TPQNIMDDQSTLR 189 L++ E + R++A+L +LYGCG RISEA+ L TP+ ++ + +R Sbjct: 144 RRLLEVAGPGGEGERSPVALRDAALLEVLYGCGARISEAVGLDVDDVTPE-VLGEGGLVR 202 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ----LPLFRGIRGKPLNPGVFQR 245 ++GKG + R+VPL P R A+ Y L L Q LF RG L+ Sbjct: 203 LRGKGSRERLVPLGPCARSALERY--LARSRPQLAAQGRGTAALFLNTRGDRLSRQSAWA 260 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 ++ + G+ + + HTLRHSFATHLL G D+R +Q +LGH ++TTQ+Y Sbjct: 261 VLQSAAQRAGIARAVSPHTLRHSFATHLLREGADVRVVQELLGHASVATTQVYA 314 >gi|146312952|ref|YP_001178026.1| site-specific tyrosine recombinase XerD [Enterobacter sp. 638] gi|145319828|gb|ABP61975.1| tyrosine recombinase XerD subunit [Enterobacter sp. 638] Length = 298 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 92/304 (30%), Positives = 158/304 (51%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +E+ L++ TL +Y D L LA + + ++ Q +++ +++R Sbjct: 9 EQFLDALWLEKNLAENTLSAYRRD----LTMLAEWLAHRGL--SLEQAQRDDLQTLLAER 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ ++L + K+ + + + K LP+ L+E Q V Sbjct: 63 MDGGYKATSSARLLSAMRRLFQHLYREKLRADDPSALLASPKLPQRLPKDLSEAQ----V 118 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D +L + + ++ R+ A+L +LY GLR+SE + LT +I Q +R+ GKG+K R Sbjct: 119 DRLLQSPTVDVP-LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VPL + Y + P+ LN ++I + LF R + + F I+ G+ Sbjct: 178 LVPLGEEAVYWVETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYATLAGI 236 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292 Query: 316 QTHP 319 Q HP Sbjct: 293 QHHP 296 >gi|293393894|ref|ZP_06638201.1| tyrosine recombinase XerC [Serratia odorifera DSM 4582] gi|291423721|gb|EFE96943.1| tyrosine recombinase XerC [Serratia odorifera DSM 4582] Length = 304 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/302 (28%), Positives = 148/302 (49%), Gaps = 25/302 (8%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L+ L++ER LS LT SY +RQ +A E + + RQL +R ++ + Sbjct: 17 LRYLKVERQLSPLTQISY---SRQLQALIALAAE--LGVSEWRQLDAVTVRQLAARSKRA 71 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 + SL LS ++SFL +L + + +R + LP+ ++ + L++ Sbjct: 72 GLQSSSLALRLSALRSFLDWLVSQGQIVANPAKGIRTPRSGRHLPKNIDVDEMGQLLEID 131 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 L + R+ A+L ++YG GLR+SE + L +++ + + GKG K R +P Sbjct: 132 L------NDPLAVRDRAMLEVMYGAGLRLSELVGLDCRHVDMAAGEVWVMGKGSKERKLP 185 Query: 202 LLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 + + + + L P D + F +GK ++P Q+ + G+ Sbjct: 186 IGRTAVTWLGHWLALRELFAPGDDAM------FLSNQGKRISPRNVQKRFAEWGVKQGVS 239 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 H LRHSFATH+L + GDLR++Q +LGH L+TTQIYT+++ ++ + +YD Sbjct: 240 SHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----LANVYDAA 295 Query: 318 HP 319 HP Sbjct: 296 HP 297 >gi|206577103|ref|YP_002241126.1| tyrosine recombinase XerC [Klebsiella pneumoniae 342] gi|206566161|gb|ACI07937.1| tyrosine recombinase XerC [Klebsiella pneumoniae 342] Length = 300 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 88/299 (29%), Positives = 149/299 (49%), Gaps = 19/299 (6%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L+ L +ER LS +TL +Y+ RQ +A E +++ +Q ++R+F + R Sbjct: 14 LRYLGVERQLSPITLTNYQ---RQLDALIALADEA--GLKSWQQCDAAQVRSFAVRSRRA 68 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 +G SL LS ++SF ++ + + + K LP+ ++ L+D Sbjct: 69 GLGPASLALRLSALRSFFDWMVSQGELAANPAKGIAAPKIPRHLPKNIDVDDVNRLLDID 128 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 L + R+ A+L ++YG GLR+SE ++L +++ + + + GKG K R +P Sbjct: 129 L------NDPLAVRDRAMLEVMYGAGLRLSELVNLDIKHLDLESGEVWVMGKGSKERRLP 182 Query: 202 LLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 + + I + DL F + + LF GK ++ Q+ + GL Sbjct: 183 IGRNAVAWIEHWLDLRGLFGTDDD---ALFLSKLGKRISARNVQKRFAEWGIKQGLNSHV 239 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ + +YD HP Sbjct: 240 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHP 294 >gi|157374032|ref|YP_001472632.1| tyrosine recombinase XerD [Shewanella sediminis HAW-EB3] gi|157316406|gb|ABV35504.1| tyrosine recombinase XerD [Shewanella sediminis HAW-EB3] Length = 304 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 99/303 (32%), Positives = 150/303 (49%), Gaps = 22/303 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +L RGLS TL +Y D F + + + Q + ++S IR ++ R Sbjct: 18 FLDDLWSSRGLSDNTLSAYRTDLNHFDRHI------QRSGQQLTEVSQEGIRGYLDIRFE 71 Query: 81 QKIGDRSLKRSLSGIKSFLKYL---KKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 Q S R +S ++ F +L KK +I + I ++ K + LP +L+E Sbjct: 72 QGFARTSSARLVSSLRRFYGFLVICKKIEINPTAQI---KSPKIARKLPGSLSEFD---- 124 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 VD +L E I+ R+ A+L LLY GLR++E +SLT + + Q +R+ GKG K Sbjct: 125 VDRLLSEPDVEDS-IECRDKAMLELLYATGLRVTELVSLTMEQLSLRQGLVRVIGKGGKE 183 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 R+VP+ I Y +L Q LF RG + F I+ G+ Sbjct: 184 RLVPMGELAVDNIEYYLQGARAELLKQKQSDVLFPSKRGVMMTRQTFWHRIKLYALRSGV 243 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + +++ + Sbjct: 244 STELSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKAR----LSQLHSE 299 Query: 317 THP 319 HP Sbjct: 300 HHP 302 >gi|242373543|ref|ZP_04819117.1| tyrosine recombinase XerC [Staphylococcus epidermidis M23864:W1] gi|242348906|gb|EES40508.1| tyrosine recombinase XerC [Staphylococcus epidermidis M23864:W1] Length = 286 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/298 (28%), Positives = 156/298 (52%), Gaps = 22/298 (7%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L++ER S+ TL+SY D QF FL E + + T Y + R ++S + + Sbjct: 2 LKVERNFSEYTLKSYHDDLVQFNEFL---NSEHLELTT---FEYKDARNYLSYLYSNNLK 55 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 ++ R +S +++F +Y + + + + + + KK LP+ E++ L Sbjct: 56 RTTVSRKISTLRTFYEYWMTQDESVVNPFVQLVHPKKEQYLPQFFYEEEM-----EALFR 110 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 T + + R+ I+ LLY G+R+SE +++ ++I + +++ GKG+K R +P Sbjct: 111 TVEQDRTKGMRDRVIIELLYATGIRVSELVNIKIKDIDMNLPGVKVLGKGNKERFIPFGE 170 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQ--LRRYLGLPLSTT 261 +++I Y D ++ + L ++G+P+ GV RY+ ++R G+ Sbjct: 171 FCKQSIERYLDEFQPRKAVDHEY-LIVNMKGEPITERGV--RYVLNDVVKRTAGVT-DIH 226 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++ + ++Y HP Sbjct: 227 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQ----LRKVYLNAHP 280 >gi|240127425|ref|ZP_04740086.1| putative site-specific recombinase [Neisseria gonorrhoeae SK-93-1035] gi|268685800|ref|ZP_06152662.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-93-1035] gi|268626084|gb|EEZ58484.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-93-1035] Length = 305 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 84/306 (27%), Positives = 146/306 (47%), Gaps = 13/306 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+N+ + G S+ T+ +Y D + LA E + LS + A + + Sbjct: 13 YLENI-VREGKSEHTVAAYRRDLEELFALLAQMPSEDAG-GVPQDLSRRDFTAALRRLSQ 70 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + R+L R LS + + +L KR + +++ K+ +P+AL ++ ++D Sbjct: 71 RGLDGRTLARKLSAWRQYCAWLVKRGLMRADPTADIKPPKQPERVPKALPQEWLNRMLDL 130 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + + R+ A+ L+YG GLR+SE L ++ D++ + + GKG K R V Sbjct: 131 PVDGGDP----LAVRDYALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQV 186 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 PL +A+ Y P + LF G G L+ Q+ + G Sbjct: 187 PLTGKSVEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLESWAAQYGDGRHV 243 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 + H +RHS+A HLL D+R++Q +LGH LSTTQIYT ++ D + +YD+ HP Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAHPR 299 Query: 321 ITQKDK 326 ++D+ Sbjct: 300 AKRQDE 305 >gi|159037538|ref|YP_001536791.1| site-specific tyrosine recombinase XerD [Salinispora arenicola CNS-205] gi|157916373|gb|ABV97800.1| tyrosine recombinase XerD [Salinispora arenicola CNS-205] Length = 345 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 87/313 (27%), Positives = 146/313 (46%), Gaps = 21/313 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L +L +ERGL+ TL SY D ++L LA + + + + ++ +++ Sbjct: 38 RGYLDHLAVERGLAANTLASYRRDLGRYLDTLA-----SVGVTELASVDPGQVEVHLARL 92 Query: 79 RTQKIGDRSLKRSLSG-----IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 R G L S + ++ ++ + + ++R LPRAL Sbjct: 93 RAGDDGHPPLAASSAARAASAVRGLHRFALREGLAGVDPSRDLRPAAPPRRLPRALPVDD 152 Query: 134 ALTLVDNV-LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 L L++ + + + + R+ A+L LYG G RISEA+ + ++ D + ++G Sbjct: 153 VLKLLEAAGSVAATGDGAPLALRDRALLEFLYGTGARISEAVGVAVDDLDTDTGAVLLRG 212 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQL 250 KG + R+VP+ A+ Y P P +F RG PL+ +R Sbjct: 213 KGGRNRLVPIGGYAVAALRGYLVRARPGLAAAGRGTPAVFLNARGGPLSRQGAWAILRGA 272 Query: 251 RRYLGLPL----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 R GLP + + HTLRHS+ATHLL G D+R +Q +LGH ++TTQ+YT V + Sbjct: 273 ARRAGLPGVGAEAVSPHTLRHSYATHLLDGGADVRVVQELLGHASVTTTQVYTMVTVQR- 331 Query: 307 GDWMMEIYDQTHP 319 + E+Y HP Sbjct: 332 ---LREVYATAHP 341 >gi|317153262|ref|YP_004121310.1| tyrosine recombinase XerD [Desulfovibrio aespoeensis Aspo-2] gi|316943513|gb|ADU62564.1| tyrosine recombinase XerD [Desulfovibrio aespoeensis Aspo-2] Length = 307 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 94/303 (31%), Positives = 147/303 (48%), Gaps = 22/303 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +L+++ IE+GLS+ +L Y D L FL EEK + L+ + +++ R Sbjct: 20 GYLEHVLIEKGLSENSLSGYSADLASLLAFL----EEKSF--RLEDLTERTLFLYLTYLR 73 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + + RSL R LS ++ F + ++ E + N K LP L ++ + Sbjct: 74 ARGLQSRSLARHLSSLRGFFAFALDQRWYKEDPGHLLENPKLPKKLPEFLTREE----MS 129 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 VL TK + R+ A+L LLY GLR+SE + + + LR+ GKG K R+ Sbjct: 130 RVLALPETATK-LGMRDQAMLELLYAAGLRVSELIEMKVLDYDAQTGLLRVFGKGAKERL 188 Query: 200 VPLLPSVRKAILEYYDL---CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 VP+ V + +L Y L F ++ +F GK L + I+ G+ Sbjct: 189 VPI-HYVAQDVLSRYLLNTRPAFRPAVDF---MFLNRSGKGLTRQGVWKLIKTYADKAGI 244 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 S + HT RHSFATHLL G DLR++Q +LGH +S T+IYT++ + + I+ Q Sbjct: 245 KRSISPHTFRHSFATHLLEGGADLRTVQMLLGHSDISATEIYTHIQAGR----LRSIHQQ 300 Query: 317 THP 319 HP Sbjct: 301 YHP 303 >gi|229496921|ref|ZP_04390628.1| tyrosine recombinase XerD [Porphyromonas endodontalis ATCC 35406] gi|229316168|gb|EEN82094.1| tyrosine recombinase XerD [Porphyromonas endodontalis ATCC 35406] Length = 313 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 81/294 (27%), Positives = 150/294 (51%), Gaps = 24/294 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + ++L++E+ LS ++ +Y D + + Y E+ + Q+ Y + F++ Sbjct: 22 EAFKRHLQLEQALSPNSISAYLMDLGKLIA----YAED--CALPLDQVEYEHLETFVASL 75 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 I RS+ R ++G+KSF ++L + + + + K LP + ++ + Sbjct: 76 YDCGIAARSIARIIAGVKSFYRFLYVDQYIQKDPTELLESPKLELHLPTVFSVEE----I 131 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D++L + +K RN AI+ +LY CGLR+SE L ++ +++ + + GKG K R Sbjct: 132 DHILEAIDY-SKNDALRNRAIIEVLYSCGLRVSELCHLKLGDVHPEEAFVHVYGKGCKER 190 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-------LFRGIRGKPLNPGVFQRYIRQLR 251 +VP+ P A+ +Y + + +P +F GK + IR L Sbjct: 191 LVPISPVALDALAQYL------ASPHRPVPKAGQEDYIFLSRLGKAIARNSVFDLIRALS 244 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 G+ + + HT RHSFATHLL G +L++I+ +LGH +STT+IYT+++S+ Sbjct: 245 EAAGITKTVSPHTFRHSFATHLLDGGANLQAIRLMLGHEDISTTEIYTHIDSQT 298 >gi|256827139|ref|YP_003151098.1| site-specific recombinase XerD [Cryptobacterium curtum DSM 15641] gi|256583282|gb|ACU94416.1| site-specific recombinase XerD [Cryptobacterium curtum DSM 15641] Length = 315 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 94/318 (29%), Positives = 152/318 (47%), Gaps = 18/318 (5%) Query: 8 EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67 E S ELL R +L+ L S T+++Y D +L F E+ I + + S Sbjct: 8 ESHSAELLVAR--YLEELTSTGRASAHTIRNYGNDLADWLRF-----AERSNINAL-EPS 59 Query: 68 YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127 + +IR ++ + ++ R LS ++ F ++ + + + + +LK+ LP Sbjct: 60 HRDIRLYLVDLDAARYAKATINRRLSSLRGFFRWGQIAGLFEHNPAEAVSSLKEGKHLPH 119 Query: 128 ALNEKQALTLVD-NVLLHTSHETKW---IDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 + + ++ N +T+ I R+ A+L LY CG RISEA +LT + Sbjct: 120 RIPPSDMVRILRVNGPRDEQGKTRLQTPIQMRDQAVLEFLYACGARISEAAALTVDAVDL 179 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPG 241 D+ T R+ GKG K R+V L +++ Y DL P F RG P+N Sbjct: 180 DRGTARLFGKGSKERVVYLHALAIESMGAYLHFARNDLLRGRTDPGYFFLSTRGLPMNTD 239 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 ++ + G+ + T H +RH+FA+ LL G DLRS+Q +LGH LSTTQIYT+V Sbjct: 240 AIRKMFKTTLIQAGVRAAYTPHDMRHTFASDLLEGGADLRSVQELLGHSSLSTTQIYTHV 299 Query: 302 NSKNGGDWMMEIYDQTHP 319 + M +++ Q HP Sbjct: 300 SIAQ----MRKVHKQAHP 313 >gi|296135962|ref|YP_003643204.1| tyrosine recombinase XerD [Thiomonas intermedia K12] gi|295796084|gb|ADG30874.1| tyrosine recombinase XerD [Thiomonas intermedia K12] Length = 317 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 90/303 (29%), Positives = 149/303 (49%), Gaps = 23/303 (7%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E GLS TL +Y D +LAF + T+R +++A+I+ R Q Sbjct: 28 LWLEDGLSPNTLAAYRRDLTLMARWLAFSRRPPLIEATLR-----DVQAYIAARFVQSKA 82 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S R L ++ F ++ + + ++ L + ++ P+ L+E Q V+ +L Sbjct: 83 TSS-NRRLVVLRRFYRWALREHLRSDDPTLQLDTARQPPRRPKTLSEAQ----VEALLAA 137 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 +T + R+ A+L LLY GLR+SE ++L + DQ ++I GKG K R+VP Sbjct: 138 PEVDTP-LGLRDRAMLELLYASGLRVSELVALPVVRVSLDQGVVQIAGKGGKERLVPFGS 196 Query: 205 SVRKAILEYYDLCPFDLNLNIQLP-LFRGIRG-------KPLNPGVFQRYIRQLRRYLGL 256 + + + Y +L P LF R + +F I+ R G+ Sbjct: 197 AAQDWLQNYLRTARHELLQGRDSPFLFVTARSGQSARETTGMTRQMFWMRIKAYARKAGI 256 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + + HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT++ + + ++ + Sbjct: 257 DVPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHIARER----LKTLHAR 312 Query: 317 THP 319 HP Sbjct: 313 HHP 315 >gi|254448186|ref|ZP_05061649.1| tyrosine recombinase XerD [gamma proteobacterium HTCC5015] gi|198262312|gb|EDY86594.1| tyrosine recombinase XerD [gamma proteobacterium HTCC5015] Length = 311 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 96/308 (31%), Positives = 152/308 (49%), Gaps = 26/308 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L NL + GLS TL SY D RQ FL + Q ++ F++ R Sbjct: 21 RRFLDNLWMSHGLSDNTLGSYGSDLRQLSSFLGDKGSHLL------QADRGALQDFLAFR 74 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 +++ S R LS ++ F +Y E + + K LP++++E+ L+ Sbjct: 75 LSKRGKASSAARLLSSLRRFYRYQVSEGRLQEDPTALLESPKLGVRLPKSISEEHIERLL 134 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 HT + R+ +L +LY GLR++E ++L + I +++ GKG K R Sbjct: 135 RAPDTHTD-----LGLRDRLMLEMLYASGLRVTELVTLRLEQIDAHHGIVKVMGKGRKER 189 Query: 199 IVPLLPSVRKAILEYYDLCPFDL--NLNIQLP-LFRGIRGKPLNP----GVFQRYIRQLR 251 +VP+ + EY DL + P LF RG + V ++Y +Q Sbjct: 190 LVPIGDEALAWLGEYLQSARPDLLKGRDTTTPFLFVTRRGGGMTRQTAWNVIKKYAQQA- 248 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 +LG LS HTLRH+FATHLL++G DLR++Q +LGH LSTTQIYT+V ++ + Sbjct: 249 -HLGGDLS--PHTLRHAFATHLLNHGADLRAVQMLLGHSDLSTTQIYTHVANER----LR 301 Query: 312 EIYDQTHP 319 + ++Q HP Sbjct: 302 QFHEQHHP 309 >gi|329956554|ref|ZP_08297151.1| tyrosine recombinase XerD [Bacteroides clarus YIT 12056] gi|328524451|gb|EGF51521.1| tyrosine recombinase XerD [Bacteroides clarus YIT 12056] Length = 316 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 88/289 (30%), Positives = 143/289 (49%), Gaps = 20/289 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + Q + +E+ LS T +Y D ++ L FL E I I + + +++ F + Sbjct: 18 RKYQQYIRLEKALSSNTFDAYMTDLQKLLHFL---DGENIDIPDV---TPDDLQRFAAGL 71 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 I RS R LSGIKSF +L + K +P L ++ + Sbjct: 72 HDIGIHPRSQARILSGIKSFFHFLVIADYLEADPSELLEGPKIGFKIPEVLTIEE----I 127 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D ++ E K RN AIL LY CGLR+SE +L ++ ++ ++++GKG K R Sbjct: 128 DRIISTVDMEKKE-GQRNRAILETLYSCGLRVSELCNLKISDLYFEEGFIKVEGKGSKQR 186 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLN-----IQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 +VP+ P K I ++ D NL + +F G ++ + I++L Sbjct: 187 LVPISPRAIKEIKYWFA----DRNLGKIKKGYEDYVFLARWGNRISRIMVFHMIKELAEK 242 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 G+ + + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ Sbjct: 243 AGITKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHID 291 >gi|91776681|ref|YP_546437.1| tyrosine recombinase XerD [Methylobacillus flagellatus KT] gi|91710668|gb|ABE50596.1| Tyrosine recombinase XerD [Methylobacillus flagellatus KT] Length = 277 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 85/290 (29%), Positives = 147/290 (50%), Gaps = 16/290 (5%) Query: 31 LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90 ++K TL SY D F +L ++ + + + +I+ FI+ R Q RS+ R Sbjct: 1 MAKNTLTSYRQDLAAFAAWL-----QQTRRRAMLEAGPEDIQGFIAFRFPQS-QPRSISR 54 Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150 ++ ++ F ++ + + +++ + K SLP++L+E + L++ +T+ Sbjct: 55 LVASLRRFYRFALRESYISADPSIHIESPKLPRSLPKSLSEDEVERLINAPDTNTN---- 110 Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210 + R+ A+L LY GLR+SE + + + +RI GKG K R+VPL + + Sbjct: 111 -LGLRDRAMLETLYATGLRVSELVGMHVTELSLTDGVVRITGKGSKTRLVPLGEQAVEWL 169 Query: 211 LEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 Y + P L + LF RG+ + F I++ G+ S + H LRH+F Sbjct: 170 ARYLQEGRPSILQQRLSDHLFVTQRGEGMTRQAFWYLIKRYAAIAGIQASLSPHVLRHAF 229 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 ATHLL++G DLR +Q +LGH +STTQIYT+V + + ++ Q HP Sbjct: 230 ATHLLNHGADLRVVQMLLGHADISTTQIYTHVARER----LKRLHQQHHP 275 >gi|228475035|ref|ZP_04059763.1| tyrosine recombinase XerC [Staphylococcus hominis SK119] gi|228271020|gb|EEK12408.1| tyrosine recombinase XerC [Staphylococcus hominis SK119] Length = 297 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 89/313 (28%), Positives = 164/313 (52%), Gaps = 24/313 (7%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 ++ +L L++ER S TL++Y D QF FL E+++ +R Y + R ++S Sbjct: 5 QKKFLNMLKVERNFSDHTLKAYHDDLAQFNQFL----EQELL--NLRTFEYKDARNYLSY 58 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 + + ++ R +S +++F ++ + + + + + + KK LP+ E++ L Sbjct: 59 LYSNNLKRTTVSRKISTLRTFYEFWMTQDTSVNNPFIQLVHPKKEQYLPQFFYEEEMEAL 118 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 + V S++ K R+ ++ LLY G+R+SE +++ ++ + +++ GKG+K Sbjct: 119 FNTV----SNDAKK-GLRDRVVIELLYATGIRVSELVNIKVMDLDMNLPGVKVLGKGNKE 173 Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQ--LRRY 253 R VP R++I +Y + P L L ++G P+ GV RY+ + R Sbjct: 174 RFVPFGEFCRQSIEQYLEKFKP--LKSKSHPYLIVNMKGDPITERGV--RYLLNDVVERT 229 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++ + ++ Sbjct: 230 AGVT-EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ----LRKV 284 Query: 314 YDQTHPSITQKDK 326 Y HP ++ K Sbjct: 285 YLSAHPRAKKESK 297 >gi|239618321|ref|YP_002941643.1| integrase family protein [Kosmotoga olearia TBF 19.5.1] gi|239507152|gb|ACR80639.1| integrase family protein [Kosmotoga olearia TBF 19.5.1] Length = 305 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 98/305 (32%), Positives = 153/305 (50%), Gaps = 27/305 (8%) Query: 10 VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69 + FE ER + + LE R LSK T++SY D + F +L Y+ + RQ+ Sbjct: 1 MDFEDAVER--FAEYLEFVRNLSKNTVESYTRDLKHFGQYLEEYSLD------YRQVKRR 52 Query: 70 EIRAFISKRRTQKIGDR-----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 +I F+ + D S+ R LS +K+F +L ++ N + +L K+ Sbjct: 53 DIEKFMKELSQGNFSDSRLSPSSVARHLSTLKTFYMFLY---VSGTVNKIPT-DLVKAPK 108 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MD 183 R + E + V +L + + RN AI+ L+Y CGLR+SE SLT ++I ++ Sbjct: 109 TRRRIPEYISYEEVQKIL--EAFPETHLGKRNRAIVALMYYCGLRVSEVCSLTLRDISLE 166 Query: 184 DQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLN 239 +R++ GKGDK RIVPL P + I +Y D P D N +I+L F GIRG+P+ Sbjct: 167 SDPLVRVKSGKGDKDRIVPLTPDAVRIISDYLKHRDRFP-DANRHIKL--FVGIRGEPIT 223 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 + ++ + + H RHS ATHLL G ++ +Q ILGH +STT IY Sbjct: 224 RKSVNKMLQNHVKKIFPDKHLHPHIFRHSCATHLLQRGASIKIVQEILGHANISTTSIYL 283 Query: 300 NVNSK 304 ++ + Sbjct: 284 HITDR 288 >gi|34223075|sp|Q9KJF6|XERC_STAAU RecName: Full=Tyrosine recombinase xerC gi|9622622|gb|AAF89877.1| putative site-specific recombinase XerC [Staphylococcus aureus] Length = 298 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 99/322 (30%), Positives = 163/322 (50%), Gaps = 42/322 (13%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 ++ +L L++ER S+ TL+SY+ D QF FL +E + + T Y + R ++S Sbjct: 5 QEAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLE---QEHLQLNT---FEYRDARNYLSY 58 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSLPRALNEKQ 133 + S+ R +S +++ +Y +T + NI+N + + KK LP+ E++ Sbjct: 59 LYLNHLKRTSVSRKISTLRTLYEYW----MTLDENIINPFVHLVHPKKEKYLPQFSLEEE 114 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L V TS + R+ IL LLY G+R+SE +++ Q+I + + + GK Sbjct: 115 MEALFTTVEKDTSK-----NLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGK 169 Query: 194 GDKIRIVPLLPSVRKAILEYYDL------CPFD---LNLNIQLPLFRGIRGKPLNPGVFQ 244 G K R VP R++I Y + C D LN+ + RG+R LN V Sbjct: 170 GSKERFVPFGAYCRQSIENYLEHFKPIQSCNHDFLILNMKGEAITERGVR-YVLNDIV-- 226 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 +R G+ H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++ Sbjct: 227 ------KRTAGVS-EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQ 279 Query: 305 NGGDWMMEIYDQTHPSITQKDK 326 + ++Y HP ++++ Sbjct: 280 Q----LRKVYLNAHPRAKKENE 297 >gi|256391647|ref|YP_003113211.1| tyrosine recombinase XerD [Catenulispora acidiphila DSM 44928] gi|256357873|gb|ACU71370.1| tyrosine recombinase XerD [Catenulispora acidiphila DSM 44928] Length = 306 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 92/316 (29%), Positives = 152/316 (48%), Gaps = 24/316 (7%) Query: 10 VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69 VS +L + L++L +ERGLS TL +Y D ++ +FL T ++ I + Sbjct: 4 VSDDLDSRVKAHLEHLSVERGLSANTLAAYRRDLSRYRVFLD--TRDRANFSDIDR---A 58 Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 ++ AF++ Q S R++S ++ ++ ++ + LP+AL Sbjct: 59 DVSAFLAS--LQDGAASSAARTMSAVRGLHRFAVAEGWVGVDVSDDVAPPQVPMRLPKAL 116 Query: 130 NEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 +D++ LL + + + R+ A+L LY G R+SEA++L +I + T Sbjct: 117 P-------LDDIERLLAATEIDEPMALRDRALLEFLYSTGARVSEAVALDVDDIDREDRT 169 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL----PLFRGIRGKPLNPGVF 243 + + GKG K R+VP+ +A+ +Y +L + LF RG L Sbjct: 170 VVLDGKGGKQRLVPVGSYACRAVDDYLVRLRPELTRKARSGNGGALFLNARGGRLTRQGA 229 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + + +GL + HTLRHSFATHLL G D+R++Q +LGH +TTQIYT V Sbjct: 230 WTVLGAVAERVGLAGRVSPHTLRHSFATHLLDGGADIRTVQELLGHSSATTTQIYTRVTV 289 Query: 304 KNGGDWMMEIYDQTHP 319 D + E+Y +HP Sbjct: 290 ----DRLREVYATSHP 301 >gi|313672931|ref|YP_004051042.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939687|gb|ADR18879.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672] Length = 297 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 85/318 (26%), Positives = 162/318 (50%), Gaps = 24/318 (7%) Query: 10 VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69 ++ EL+K Q++++ + LS+ ++++Y+ D + F Y L+ + Sbjct: 3 ITEELVKRFQHYMK---YDLSLSENSIEAYKRDLMELTRFTKDY-----------NLTPS 48 Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 ++ +++S R + + S+ R+LSGI +F +L + KI ++ + ++ KK LP+ L Sbjct: 49 DLVSYMSHLRKKGLSIESILRNLSGISAFYDFLIQEKIFDKNPVASISKPKKWEKLPKFL 108 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 N ++ L++ ++ R++ IL Y G+R+SE + +I + + Sbjct: 109 NFEEV-----EALINAPDKSTPTGYRDNIILKTFYSTGMRVSELVKCKTSDIDFKRGIVS 163 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 + GKG K R +P+ S++ + +Y ++ + + LF PL I+ Sbjct: 164 VVGKGSKQRFLPIYQSLQDELKQYIEVRHRYFIKEKDNGFLFLNKNSAPLTRVYCWMLIK 223 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 + + G+ + HTLRHSFATHLL+NG DLR+IQ +LGH ++TT+IYT++ Sbjct: 224 KYCKKAGIKKDISPHTLRHSFATHLLTNGADLRTIQLLLGHSDIATTEIYTHITDNK--- 280 Query: 309 WMMEIYDQTHPSITQKDK 326 + I +Q HP ++K Sbjct: 281 -VRSILEQFHPRFKMRNK 297 >gi|119964153|ref|YP_947420.1| tyrosine recombinase XerD [Arthrobacter aurescens TC1] gi|119951012|gb|ABM09923.1| tyrosine recombinase XerD [Arthrobacter aurescens TC1] Length = 319 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 95/330 (28%), Positives = 147/330 (44%), Gaps = 62/330 (18%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI---- 75 ++LQ++ +ERGL+ TL +Y D ++ FLA E+ ++ + AF+ Sbjct: 18 DYLQHVGVERGLAANTLSAYRRDLARYSNFLAAQGVEQPG-----SITRHHVTAFVQALS 72 Query: 76 -SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 +G RS R++ ++ K+ TT ++ LP+A++ + Sbjct: 73 DGSDGAAALGVRSAARTVVAVRGLHKFWALEGTTTADPASDVHPPMPGKRLPKAISVGE- 131 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-----DDQSTLR 189 V +L +T R+ A+L LY G RISEA+ L ++ D + +R Sbjct: 132 ---VTRILEAAGSDTA-TGLRDRALLEFLYSTGARISEAVGLDVDDVSLEDTGGDPAIVR 187 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-------NPGV 242 + GKG K R+VPL +A+ Y +RG+PL P + Sbjct: 188 LFGKGSKERLVPLGSFGARAVGAYV------------------VRGRPLLASKGKGTPAL 229 Query: 243 F--QRYIRQLRRYLGLPLSTTA-----------HTLRHSFATHLLSNGGDLRSIQSILGH 289 F R R R+ L T A HTLRHSFATHLL G D+R +Q +LGH Sbjct: 230 FLNARGGRISRQSAWTILKTAAEKANITKDVSPHTLRHSFATHLLEGGADVRVVQELLGH 289 Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 ++TTQ+YT V + D + E+Y HP Sbjct: 290 ASVTTTQVYTLVTA----DTLREVYAAAHP 315 >gi|227495065|ref|ZP_03925381.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436] gi|226831517|gb|EEH63900.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436] Length = 302 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 94/313 (30%), Positives = 152/313 (48%), Gaps = 21/313 (6%) Query: 11 SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70 + LLK+ WL++ RG S T ++YE D + L + F + I Q Sbjct: 5 NLALLKDFTTWLEHF---RGFSTHTQRAYENDVKAALEY-CFGNDPFTPIDFNSQ----A 56 Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 +R+F+S R + S+ R + ++ F + K+ L ++ K N LP+ L+ Sbjct: 57 LRSFLSNRIRKGHARASVARYAASLRLFSSWALKQGHLNSDPSLKLKTAKVDNHLPQVLS 116 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 +Q L N L+ T+ R+ A LLY CG+R++E + L ++ TLR+ Sbjct: 117 LEQINQLF-NHLVETAQTGNVNAIRDWATSELLYSCGIRVAELVGLNLTSVDGSNRTLRV 175 Query: 191 QGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 GKG+K R+VP L S+R + + P +N LF G RG ++ + + Sbjct: 176 IGKGNKERLVPFGTPALESLRAWVTQGR---PQLVNERSGQALFLGSRGGRIDQRIVREC 232 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 + + G+P+ + H LRH ATH+L G DLR++Q +LGH L+TTQ YT+V++ Sbjct: 233 LEKACVQAGVPV-LSPHGLRHCAATHMLEGGADLRTVQDMLGHASLATTQRYTHVDAVR- 290 Query: 307 GDWMMEIYDQTHP 319 + I Q HP Sbjct: 291 ---LSNIMRQAHP 300 >gi|88855245|ref|ZP_01129910.1| tyrosine recombinase [marine actinobacterium PHSC20C1] gi|88815773|gb|EAR25630.1| tyrosine recombinase [marine actinobacterium PHSC20C1] Length = 302 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 89/297 (29%), Positives = 138/297 (46%), Gaps = 12/297 (4%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +RG S T++SY D + F E + L + + + + Sbjct: 14 LAADRGFSVHTVRSYRSD---LTNLVGFAVERRAIAADDLDLELLRDWLWHASQ--AGLA 68 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 +L R + ++F +L++ ++ ++ K LPR LN Q ++ +V Sbjct: 69 KSTLARRAAASRAFSAWLEQTHQSSTDAAARLKAPKAERHLPRVLNRDQMADMLQSVATR 128 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 S + R+ AI+ LLY LR+SE L+ +I D + T+R+ GKG K R+VP Sbjct: 129 AS-TADPVALRDQAIVELLYASALRVSELAGLSLSDIDDSRLTVRVLGKGAKERVVPFGI 187 Query: 205 SVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 AI +Y D L + PLF G RGK ++ I L + + Sbjct: 188 PAHHAISDYLDRGRPQLIEETDGSAPLFVGARGKRVSTRTVYEVIAHLLAEVPGSGGSGP 247 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HTLRH+ ATHLL G DLR++Q +LGH L TTQ+YT+V+++ + E Y HP Sbjct: 248 HTLRHTAATHLLDGGADLRAVQEMLGHASLGTTQLYTHVSTER----LRESYRTAHP 300 >gi|225163580|ref|ZP_03725889.1| tyrosine recombinase XerD [Opitutaceae bacterium TAV2] gi|224801815|gb|EEG20102.1| tyrosine recombinase XerD [Opitutaceae bacterium TAV2] Length = 342 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 87/302 (28%), Positives = 140/302 (46%), Gaps = 11/302 (3%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++ LE+ERG S T+++YE D Q FL + + + R ++ + ++ Sbjct: 45 DFCAVLELERGRSDHTVEAYESDLTQCATFL----QRQKKLADWRAVTGAAVTDWLYSLD 100 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 SL R LS ++ F ++L + + + ++ K +P LN ++ L+ Sbjct: 101 GDDYSVASLARKLSALRMFARHLVREQTRPDDFTELLQGPKLVRRVPGTLNAEEVARLLA 160 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 R+ AIL L Y GLR+SE L Q + + LR+ GKG K R+ Sbjct: 161 APGGGGGGGGPHA-LRDRAILELFYSSGLRVSELSGLLLQQVDLENGMLRVFGKGAKERV 219 Query: 200 VPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 VP+ R+A+ Y F LF RG ++ + +++ + G+ Sbjct: 220 VPVGSKAREALATYLTAARHHFVKEKKTGSQLFLSERGTAISRKMLWVLVKKYTKLAGIT 279 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 H LRHSFATHLLS G DLR+IQ +LGH + TTQIYT V + +++ + + Sbjct: 280 KPVKPHLLRHSFATHLLSGGADLRAIQEMLGHATIGTTQIYTAVEERR----LLDQHARF 335 Query: 318 HP 319 HP Sbjct: 336 HP 337 >gi|83942296|ref|ZP_00954757.1| tyrosine recombinase XerD [Sulfitobacter sp. EE-36] gi|83846389|gb|EAP84265.1| tyrosine recombinase XerD [Sulfitobacter sp. EE-36] Length = 324 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 94/304 (30%), Positives = 146/304 (48%), Gaps = 30/304 (9%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 ELL +L+ E G + T +Y D + F FLA T + +T+ +I Sbjct: 4 ELLHWISTFLEAQAAELGAATNTQLAYGRDLKDFDSFLARRTLDFVTV------GRKDIE 57 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 A++ Q + + R LS IK ++ + +++ + + + LP+ L+E Sbjct: 58 AYLVWCDAQGLAKSTRARRLSAIKQLYRFAFEEGWRSDNPAIQIAGPGQDKRLPKVLSED 117 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + L+D H+ T RN+ ++ LLY G+R+SE +SL D L I G Sbjct: 118 EVDQLLDAAR-HSGRNTS-DQLRNTCLMELLYATGMRVSELVSLRVSAARGDPRLLLIMG 175 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR-----YI 247 KG K R+VPL R+A+ + L D +GKP + +F Y+ Sbjct: 176 KGGKERLVPLSDPSREALAAW--LVQRDRTDEAAQ-----AKGKPASIYLFPSRGSAGYL 228 Query: 248 RQLRRYLGL----------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + R YL + P T HTLRH+FATHLL+NG DLR+IQ++LGH ++TT+I Sbjct: 229 TRHRFYLLIKEFALTAGVDPSKVTPHTLRHAFATHLLANGADLRAIQTMLGHADVATTEI 288 Query: 298 YTNV 301 YT+V Sbjct: 289 YTHV 292 >gi|309775658|ref|ZP_07670657.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53] gi|308916564|gb|EFP62305.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53] Length = 304 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 90/311 (28%), Positives = 149/311 (47%), Gaps = 21/311 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +LQ ++ S T +Y+ D R+F+ FL + ++ ++ + +I+ R Sbjct: 8 FLQYMDSLNSGSVHTRDAYQRDIREFISFL-----QAEGVEELQDADRILVMNYIASLRE 62 Query: 81 Q-----KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 + ++ + ++ R LS ++SF +YL + ++ L + K+S +P L + Sbjct: 63 KSGVSGEMKNSTIARKLSSLRSFYRYLNEYVGIAQNPFLYFKTPKRSKRIPEFLFYDEMD 122 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 T + + L T R+ A+ L+Y CGLR+SEA SL ++I + L I GKG+ Sbjct: 123 TFLSSFALDTPD-----GLRDRAMFELMYACGLRVSEAASLRLRDIDLQERILTITGKGN 177 Query: 196 KIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRY 253 K RIVP + + Y + P + + + + F RGK L Q ++ Sbjct: 178 KQRIVPFYALAGELVERYLQQVRPLWMQPSQEHDIVFINQRGKGLTTRGIQYRMQVAAAG 237 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 L + H RHSFATHLL NG DLR +Q +LGH LSTTQ+Y +V + + + Sbjct: 238 CKLQVHVHPHMFRHSFATHLLDNGADLRVVQELLGHSSLSTTQVYVHVTQER----LKKA 293 Query: 314 YDQTHPSITQK 324 Y HP +K Sbjct: 294 YTHAHPRAQEK 304 >gi|157829635|pdb|1A0P|A Chain A, Site-Specific Recombinase, Xerd Length = 290 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 88/289 (30%), Positives = 150/289 (51%), Gaps = 15/289 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +E+ L++ TL +Y R + + + +T+ T + +++A +++R Sbjct: 7 EQFLDALWLEKNLAENTLNAYR---RDLSMMVEWLHHRGLTLATAQS---DDLQALLAER 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K + ++ + K LP+ L+E Q L+ Sbjct: 61 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L+ ++ R+ A+L +LY GLR+SE + LT +I Q +R+ GKG+K R Sbjct: 121 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 175 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VPL + Y + P+ LN ++I + LF R + + F I+ G+ Sbjct: 176 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 234 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ Sbjct: 235 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATE 283 >gi|298528177|ref|ZP_07015581.1| tyrosine recombinase XerD [Desulfonatronospira thiodismutans ASO3-1] gi|298511829|gb|EFI35731.1| tyrosine recombinase XerD [Desulfonatronospira thiodismutans ASO3-1] Length = 310 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 89/301 (29%), Positives = 152/301 (50%), Gaps = 16/301 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L++ + +GL+ T+ +Y D FL FL ++ + I L Y F+ ++ Sbjct: 12 RSFLEHALVIKGLAHQTVAAYTEDLSTFLEFLQEKGKDVLDINDQVLLVYL---MFLRRK 68 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q RSL R ++ ++ F YL ++ + ++ + N K LPR L+ + V Sbjct: 69 GLQ---SRSLARHMASLRGFYAYLHEQGLLKDNPAEMLENPKLPQLLPRVLS----IPEV 121 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 +++L S K + AR+ +L +LY GLR+SE ++L + +R+ GKG + R Sbjct: 122 ESILSQPSTGDK-LGARDKTMLEMLYAAGLRVSELINLKVLDFDPQAGIIRVWGKGARER 180 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +VPL S + + Y + + +F GK L+ + I++ G+ Sbjct: 181 LVPLHFSCMQWLDFYLQHWRSSFSPRVD-KVFINRSGKALSRQGVWKIIKKYTVMAGIKK 239 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + HTLRHSFATHLL G DLR++Q +LGH ++ T+IYT+V S D + +D H Sbjct: 240 DVSPHTLRHSFATHLLEGGADLRTVQVLLGHSDITATEIYTHVQS----DRLKSAHDFFH 295 Query: 319 P 319 P Sbjct: 296 P 296 >gi|282164156|ref|YP_003356541.1| putative site-specific recombinase [Methanocella paludicola SANAE] gi|282156470|dbj|BAI61558.1| putative site-specific recombinase [Methanocella paludicola SANAE] Length = 272 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 123/228 (53%), Gaps = 26/228 (11%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 +S IKSF +L + + T + + ++K P L + + L++ L Sbjct: 68 MSIIKSFYSFLVENEYITANPAKGISSVKIDKKAPIYLTQDEMRALIETAL--------- 118 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211 D R++ I+ +LY G+R+SE +++ Q+I D++T+++ GKG K RIV L+P V KA L Sbjct: 119 -DPRDNLIVKMLYATGVRVSELVNIKKQDIDLDRNTIKVFGKGAKERIV-LVPDVLKAQL 176 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 E Y C P G + LN +R I+ L G+ T H LRHSFAT Sbjct: 177 ETY--CA-------GFP--EGQKLFDLNIRTVERDIKALAVRAGINKKVTPHKLRHSFAT 225 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H+L NGG++ +IQ +LGH L+TTQIYT+ + D + ++Y THP Sbjct: 226 HMLQNGGNVVAIQKLLGHTSLNTTQIYTHYSV----DELKDMYAHTHP 269 >gi|309793966|ref|ZP_07688391.1| tyrosine recombinase XerD [Escherichia coli MS 145-7] gi|308122373|gb|EFO59635.1| tyrosine recombinase XerD [Escherichia coli MS 145-7] Length = 298 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 90/304 (29%), Positives = 156/304 (51%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +E+ L++ TL +Y R + + + +T+ T + +++A +++R Sbjct: 9 EQFLDALWLEKNLAENTLNAYR---RDLSMMVEWLHHRGLTLATAQS---DDLQALLAER 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ +YL + K + ++ + K LP+ L+E Q L+ Sbjct: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L+ ++ R+ A+L +LY GLR+SE + LT +I Q +R+ GKG+K R Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +V L + Y + P+ LN ++I + LF R + + F I+ G+ Sbjct: 178 LVSLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQ 292 Query: 316 QTHP 319 Q HP Sbjct: 293 QHHP 296 >gi|238853068|ref|ZP_04643460.1| tyrosine recombinase XerC [Lactobacillus gasseri 202-4] gi|238834316|gb|EEQ26561.1| tyrosine recombinase XerC [Lactobacillus gasseri 202-4] Length = 307 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 95/319 (29%), Positives = 152/319 (47%), Gaps = 24/319 (7%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECD---TRQFLIFLAFYTEEKITIQTIRQLSYT 69 +L+++ Q++L ER SK T+ SY D +QF +E + ++ Sbjct: 7 KLIEQFQDYLN---YERNYSKNTVSSYLNDLDEAKQFF-------KENGGFGSWDKVKSR 56 Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 ++ F+ Q + R +S ++SF ++L KR++ + + LP+ Sbjct: 57 DVEIFLQSLAAQNRSRTTQARKMSSLRSFYRFLVKREVLENDPMQTISLRLGEKKLPQFF 116 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 EK+ + D+++ H + RN A+ L Y G+R+SE SL I + Sbjct: 117 YEKEMRQVFDSLVGHDK-----LVVRNRAMFELFYATGMRLSEMASLKLDQIDFGLKIIL 171 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYI 247 + GKG+K R VP A+ EY D + P L N L +F RG+ L + + Sbjct: 172 VHGKGNKDRYVPFGKDAFDALREYRDDVRPALLGQNEDLGYVFLNNRGQKLTGRGIEYIM 231 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 +Q+ G+ H LRHSFAT +L+NG DLRS+Q +LGH LSTTQIYT+V K+ Sbjct: 232 QQVFIKAGVGGKVHPHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKH-- 289 Query: 308 DWMMEIYDQTHPSITQKDK 326 + Y + P +KD+ Sbjct: 290 --LQADYQKFFPRKDKKDE 306 >gi|171057831|ref|YP_001790180.1| tyrosine recombinase XerD [Leptothrix cholodnii SP-6] gi|170775276|gb|ACB33415.1| tyrosine recombinase XerD [Leptothrix cholodnii SP-6] Length = 286 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 91/300 (30%), Positives = 145/300 (48%), Gaps = 18/300 (6%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 + L +E GLSK TL +Y D + L + Q S + I+ R Q Sbjct: 1 MDALWLEDGLSKNTLAAYRRDLQGLAAALPAQQSAGLL-----QASEAHLLGVITARHAQ 55 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 + R L+ K F ++ + + + L + ++ LP L+E Q L+ Sbjct: 56 TRAS-TANRRLTVFKRFYRWALREALCSADPTLRLSAARQPKRLPGTLSEAQVEALLAAP 114 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSL-TPQNIMDDQSTLRIQGKGDKIRIV 200 L T + R+ A+ L+YG GLR+SE +S+ T Q + DQ L++ GKG K R+V Sbjct: 115 ALDTP-----LGLRDRAMFELMYGAGLRVSELVSIRTLQLALVDQ-VLKVLGKGAKERLV 168 Query: 201 PLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P R I Y + P L LF +R + + +++ R G+ + Sbjct: 169 PFGGEARHWIERYLTEARPALLAGRKCDALFVTVRCAGMTRQMAWNLVKKYARQAGITVP 228 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLR++Q +LGH +STTQIYT+V + + +++ + HP Sbjct: 229 LSPHTLRHAFATHLLNHGADLRAVQLLLGHADISTTQIYTHVARER----LKQLHARHHP 284 >gi|288937766|ref|YP_003441825.1| tyrosine recombinase XerC [Klebsiella variicola At-22] gi|288892475|gb|ADC60793.1| tyrosine recombinase XerC [Klebsiella variicola At-22] Length = 300 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 88/299 (29%), Positives = 149/299 (49%), Gaps = 19/299 (6%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L+ L +ER LS +TL +Y+ RQ +A E +++ +Q ++R+F + R Sbjct: 14 LRYLGVERQLSPITLTNYQ---RQLDALIALADEA--GLKSWQQCDAAQVRSFAVRSRRA 68 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 +G SL LS ++SF ++ + + + K LP+ ++ L+D Sbjct: 69 GLGPASLALRLSALRSFFDWMVSQGELAANPAKGIAAPKIPRHLPKNIDVDDVNRLLDID 128 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 L + R+ A+L ++YG GLR+SE ++L +++ + + + GKG K R +P Sbjct: 129 L------NDPLAVRDRAMLEVMYGAGLRLSELVNLDIKHLDLESGEVWVMGKGSKERRLP 182 Query: 202 LLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 + + I + DL F + + LF GK ++ Q+ + GL Sbjct: 183 IGRNAVTWIEHWLDLRGLFGTDDD---ALFLSKLGKRISARNVQKRFAEWGIKQGLNSHV 239 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ + +YD HP Sbjct: 240 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHP 294 >gi|121634218|ref|YP_974463.1| putative integrase/recombinase [Neisseria meningitidis FAM18] gi|166918892|sp|A1KS31|XERC_NEIMF RecName: Full=Tyrosine recombinase xerC gi|120865924|emb|CAM09661.1| putative integrase/recombinase [Neisseria meningitidis FAM18] Length = 305 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 84/306 (27%), Positives = 148/306 (48%), Gaps = 13/306 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+N+ + G S+ T+ +Y D + LA E + + LS + A + + Sbjct: 13 YLENI-VREGKSEHTVAAYRRDLEELFALLAQMPSEDVG-GVPQDLSRRDFTAALRRLSQ 70 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + R+L R LS + + +L +R + +++ K+ +P+AL ++ ++D Sbjct: 71 RGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQEWLNRMLDL 130 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + + R+ A+ L+YG GLR+SE L ++ D++ + + GKG K R V Sbjct: 131 PV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQV 186 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 PL +A+ Y P + LF G G L+ Q+ + Q G Sbjct: 187 PLTGKSVEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHV 243 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 + H +RHS+A HLL D+R++Q +LGH LSTTQIYT ++ D + +YD+ HP Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAHPR 299 Query: 321 ITQKDK 326 ++D+ Sbjct: 300 AKRRDE 305 >gi|21230129|ref|NP_636046.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769880|ref|YP_244642.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv. campestris str. 8004] gi|188993095|ref|YP_001905105.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv. campestris str. B100] gi|34222916|sp|Q8PCQ9|XERD_XANCP RecName: Full=Tyrosine recombinase xerD gi|21111659|gb|AAM39970.1| integrase/recombinase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575212|gb|AAY50622.1| integrase/recombinase [Xanthomonas campestris pv. campestris str. 8004] gi|167734855|emb|CAP53066.1| tyrosine recombinase [Xanthomonas campestris pv. campestris] Length = 323 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 94/309 (30%), Positives = 154/309 (49%), Gaps = 23/309 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +L L E+G+++ TL SY D L LA + + ++ + + ++ R Sbjct: 28 QRFLDRLWAEQGVARQTLDSYRRD----LEGLARWRDG--AGGGLQGADRSALFDYLRWR 81 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + RS R LS ++ F + + ++ + + SLP+AL E Q + Sbjct: 82 TEARYAPRSNARLLSTLRGFYALCLRDGVRSDDPTALLDPPRLPRSLPKALTESQ----I 137 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D +L T + R+ A+L L+Y GLR+SE ++L I Q LR+ GKG K R Sbjct: 138 DALLAAPEIGTP-LGLRDRAMLELMYAAGLRVSELVTLPAVAINLRQGVLRVTGKGSKER 196 Query: 199 IVPLLPSVRKAILEYYDLCPFDLN-------LNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 +VPL + + Y + L+ ++ Q+PLF +PL+ F +++ Sbjct: 197 LVPLGEESQHWLERYLETARPTLSERKAVPAVDGQVPLFIDAARRPLSRQQFWGLVKRYA 256 Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ P + + H LRHSFATHLL++G DLR++Q +LGH LSTTQIYT V ++ + Sbjct: 257 AVAGIDPDTVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQH----L 312 Query: 311 MEIYDQTHP 319 ++ + HP Sbjct: 313 QTLHARHHP 321 >gi|167753897|ref|ZP_02426024.1| hypothetical protein ALIPUT_02182 [Alistipes putredinis DSM 17216] gi|167658522|gb|EDS02652.1| hypothetical protein ALIPUT_02182 [Alistipes putredinis DSM 17216] Length = 298 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 92/297 (30%), Positives = 145/297 (48%), Gaps = 20/297 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIF-LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83 +++E+ LS+ T++SY D RQF F L FY R++ I +++ Q Sbjct: 19 IKLEKRLSENTVESYMRDLRQFAHFILRFYDVPP------RKVEAPMIERYLALLYDQGR 72 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 S R+LSGI+SF YL + + + K LP L ++ +V V Sbjct: 73 EKTSQARALSGIRSFYNYLMLTDVIDSTPTQFIDTPKFGRHLPDILTVEEIDRIVAAV-- 130 Query: 144 HTSHETKWIDAR-NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202 +T + R +SA+L +LY CGLR+SE SL ++ + +R+ GKGDK R+VP+ Sbjct: 131 ----DTSTVKGRRDSAMLEVLYSCGLRVSELTSLRLGDLFFGEGYIRVTGKGDKQRLVPV 186 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 + R+ I Y D + +F RG L + +R+ G+ + Sbjct: 187 SGAAREKIQRYLD--DRATKTSASDVVFLNNRGTQLTRVMVFTILREAVHRAGIDKHISP 244 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HT RHSFATHLL G +R +Q +LGH + TT+IYT++ GD + + ++ P Sbjct: 245 HTFRHSFATHLLEGGASIRQVQEMLGHESILTTEIYTHLE----GDHLRDTVEKYLP 297 >gi|48428759|gb|AAT42408.1| site-specific recombinase XerC [Collimonas fungivorans Ter331] Length = 324 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 88/317 (27%), Positives = 151/317 (47%), Gaps = 29/317 (9%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +L +L +R LS T+ +Y D ++ LA T+ +++ IR F ++ Sbjct: 12 GYLDSLAGQRQLSAHTISNYGRDLKE----LASLTQALGDNWQFAAITHFHIRKFAAQLH 67 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV- 138 ++ + S+ R LS + F ++L ++ + + ++ K++ LP+A+ A+ LV Sbjct: 68 SRGLNPSSIARKLSAWRGFFEWLAEQTTLASNPVEGVKAPKRTKPLPKAMAADDAIHLVA 127 Query: 139 -DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT------PQN-----IMDDQS 186 N L N A+ LLY GLR+SE L P + I D + Sbjct: 128 SGNPLADAGSSMALC---NQAMFELLYSSGLRVSELAGLDLHYSRQPDHESAGWIDLDAA 184 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEY----YDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242 + + GKG K R VP+ +AI + L D + LF RG ++P V Sbjct: 185 EVTVTGKGGKKRSVPVGKPAIQAIAAWLPQRAALLKSDQGEHAA-ALFLTERGTRVSPRV 243 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 Q ++ + LG+ + H LRHSFA+H+L GDLR++Q +LGH ++ TQ+YT+++ Sbjct: 244 VQLRLKHHAQSLGIASNVHPHVLRHSFASHMLQGSGDLRAVQELLGHASIAATQVYTSLD 303 Query: 303 SKNGGDWMMEIYDQTHP 319 + + ++YD HP Sbjct: 304 FQR----LAQVYDAAHP 316 >gi|261416671|ref|YP_003250354.1| integrase family protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373127|gb|ACX75872.1| integrase family protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327068|gb|ADL26269.1| site-specific recombinase, phage integrase family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 298 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 91/304 (29%), Positives = 151/304 (49%), Gaps = 18/304 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 QN+L L+ +R S+ T+ +Y ++L + E ++ +++ ++AF+ Sbjct: 8 QNFLIYLQTQRRYSERTVITYRKSLEKYLATI----NENAPLEAFSEMN---VKAFVWDL 60 Query: 79 RT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 + QK+ S+ L+ +KSF KYL + KI ++ + K+ L L +K L Sbjct: 61 KIKQKLAPTSICEHLAALKSFGKYLVRSKILQKNPAEAVPMPKRPKRLVSFLGQKD---L 117 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 + R +L L+YG GLRISE SL + + +R+ GKG+K Sbjct: 118 AEEKFPELPENPTLPQVRARLLLELIYGSGLRISECQSLCWNQLQIKERLVRVIGKGNKE 177 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLN--LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RIVP+ ++ + LE + + I +F GKP + + I L R +G Sbjct: 178 RIVPITDTL-ISWLEKFRAVEIEAGHTPTITSYVFLSENGKPYDIRTLRNDIHNLLRDIG 236 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H LRHSFATHLL NG ++ S++ +LGH +STTQIYT+VN++ + + + Sbjct: 237 WEGKASPHVLRHSFATHLLENGAEIMSVKEMLGHSNISTTQIYTHVNAER----LKQAFK 292 Query: 316 QTHP 319 +THP Sbjct: 293 KTHP 296 >gi|329905896|ref|ZP_08274277.1| site-specific tyrosine recombinase [Oxalobacteraceae bacterium IMCC9480] gi|327547427|gb|EGF32250.1| site-specific tyrosine recombinase [Oxalobacteraceae bacterium IMCC9480] Length = 304 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 87/286 (30%), Positives = 145/286 (50%), Gaps = 18/286 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 + L +E GL+K +L++Y D F ++LA ++ + ++ +I A+ + R Sbjct: 17 TFCDTLWLEDGLAKNSLEAYRRDLTAFALWLAQASQTGLL-----AVTGADINAYFAARH 71 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + R L+ +K F + + K ++ L + + K+ P+ L+E Sbjct: 72 DASKAT-TANRRLAVLKRFYQLALRNKQISDDPCLKLHSAKQPPRFPKTLSEANV----- 125 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 LL + + R+ +L L+Y GLR++E + L + + +R+ GKG+K R+ Sbjct: 126 EALLAAPDVSTPLGLRDRTMLELMYASGLRVTELVLLKSIELSLNDGVVRVTGKGNKTRL 185 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQ--LRRYLG 255 VP R I E Y L L+ Q+ LF RG P+ +F +++ +R + Sbjct: 186 VPFGEEARSWI-ERYLLEARAQILDGQMDDALFVTARGGPMTRQMFWVVVKKCAVRADIH 244 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 PLS HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V Sbjct: 245 APLSP--HTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHV 288 >gi|307546851|ref|YP_003899330.1| integrase/recombinase XerC [Halomonas elongata DSM 2581] gi|307218875|emb|CBV44145.1| K03733 integrase/recombinase XerC [Halomonas elongata DSM 2581] Length = 308 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 90/296 (30%), Positives = 140/296 (47%), Gaps = 15/296 (5%) Query: 7 PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66 P S L +E +L+ L R S T+ +Y D L FL ++ I L Sbjct: 4 PLDTSTPLGREADAFLEALS--RTASPATVDAYRRDLAALLDFL-----DRHDIGDPAAL 56 Query: 67 SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126 +R F+ R++ + RSL R + + F ++L + + +R + LP Sbjct: 57 DAALLRRFLGGERSRGLAPRSLARRRAALSRFAEHLMACGYLDHNPVSLVRTPRVPRDLP 116 Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 R ++ +D T H+ + R+ A+L L Y GLR++E +L +I Sbjct: 117 RPVDVDALARFLD-----TPHDGSPLACRDQAMLELFYSSGLRLAELAALDLDDIH--AR 169 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 +R+ GKG K R VP+ +A+ ++ L L + + LF G RG L Q+ Sbjct: 170 RVRVLGKGGKPRQVPVGRRADQALTDWLSLRGA-LAADGEPALFVGARGNRLGHRAIQQR 228 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 +RQL GL H LRHSFA+HLL + DLR++Q +LGH LSTTQ+YT ++ Sbjct: 229 MRQLALTRGLAEHLHPHRLRHSFASHLLESSQDLRAVQELLGHANLSTTQVYTRLD 284 >gi|27467846|ref|NP_764483.1| xerC protein [Staphylococcus epidermidis ATCC 12228] gi|57866718|ref|YP_188400.1| tyrosine recombinase XerC [Staphylococcus epidermidis RP62A] gi|282876316|ref|ZP_06285183.1| tyrosine recombinase XerC [Staphylococcus epidermidis SK135] gi|34222792|sp|Q7ZAJ4|XERC_STAES RecName: Full=Tyrosine recombinase xerC gi|81674902|sp|Q5HPU0|XERC_STAEQ RecName: Full=Tyrosine recombinase xerC gi|27315391|gb|AAO04525.1|AE016747_22 xerC protein [Staphylococcus epidermidis ATCC 12228] gi|57637376|gb|AAW54164.1| tyrosine recombinase XerC [Staphylococcus epidermidis RP62A] gi|281295341|gb|EFA87868.1| tyrosine recombinase XerC [Staphylococcus epidermidis SK135] gi|329736214|gb|EGG72486.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU028] gi|329736604|gb|EGG72870.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU045] Length = 296 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 93/312 (29%), Positives = 168/312 (53%), Gaps = 32/312 (10%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 K ++ +L L++ER S+ TL+SY D QF FL E + ++T Y + R ++ Sbjct: 3 KIQETFLYMLKVERNFSEYTLKSYHDDLVQFNNFLE---REHLQLET---FEYKDARNYL 56 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSLPRALNE 131 + + ++ ++ R +S +++F ++ +T +++I+N + + KK LP+ E Sbjct: 57 AFLYSNQLKRTTVSRKISTLRTFYEFW----MTQDNSIINPFVQLVHPKKEKYLPQFFYE 112 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 ++ L V H+ K R+ I+ LLY G+R+SE +++ ++I + +++ Sbjct: 113 EEMEALFQTV----EHDNKK-GIRDKVIIELLYATGIRVSELINIKLKDIDMNLPGVKVL 167 Query: 192 GKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQ 249 GKG+K R +P R++I Y + P L + L + ++G P+ GV RY+ Sbjct: 168 GKGNKERFIPFGEFCRQSIERYLEEFQPKQLANHDYLIV--NMKGDPITERGV--RYVLN 223 Query: 250 --LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 ++R G+ H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++ Sbjct: 224 DVVKRTAGVN-DIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQ-- 280 Query: 308 DWMMEIYDQTHP 319 + ++Y HP Sbjct: 281 --LRKVYLNAHP 290 >gi|83955532|ref|ZP_00964163.1| tyrosine recombinase XerD [Sulfitobacter sp. NAS-14.1] gi|83840176|gb|EAP79351.1| tyrosine recombinase XerD [Sulfitobacter sp. NAS-14.1] Length = 324 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 94/298 (31%), Positives = 143/298 (47%), Gaps = 18/298 (6%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 ELL +L+ E G + T +Y D + F FLA + +T+ +I Sbjct: 4 ELLHWISTFLEAQAAELGAATNTQLAYGRDLKDFDSFLARRALDFVTV------GRKDIE 57 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 A++ Q + + R LS IK ++ + T++ + + + LP+ L+E Sbjct: 58 AYLVWCDAQGLAKSTRARRLSAIKQLYRFAFEEGWRTDNPAIQIAGPGQDKRLPKVLSED 117 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + L+D H+ T RN+ ++ LLY G+R+SE +SL D L I G Sbjct: 118 EVDQLLDAAR-HSGRNTS-DQLRNTCLMELLYATGMRVSELVSLRVNAARGDPRLLLIMG 175 Query: 193 KGDKIRIVPLLPSVRKAILEYY------DLCPFDLNLNIQLPLF--RGIRGKPLNPGVFQ 244 KG K R+VPL R+A+ + D + LF RG G L F Sbjct: 176 KGGKERLVPLSDPSREALAAWLVQRDNTDEAAQAKGKPASIYLFPSRGSAGY-LTRHRFY 234 Query: 245 RYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 I++ G+ P T HTLRH+FATHLL+NG DLR+IQ++LGH ++TT+IYT+V Sbjct: 235 LLIKEFALTAGVDPSKVTPHTLRHAFATHLLANGADLRAIQTMLGHADVATTEIYTHV 292 >gi|296129776|ref|YP_003637026.1| tyrosine recombinase XerD [Cellulomonas flavigena DSM 20109] gi|296021591|gb|ADG74827.1| tyrosine recombinase XerD [Cellulomonas flavigena DSM 20109] Length = 310 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 94/332 (28%), Positives = 146/332 (43%), Gaps = 65/332 (19%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFL--------AFYTEEKITIQTIRQLSYTE 70 + +L +L +ERGL+ TL +Y D +++ L A TE + + ++ Sbjct: 10 EGYLAHLAVERGLAAHTLAAYRRDLTRYVAHLHARGRTEPAEITERDAEDYVLVLRTGSD 69 Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 RA +S S RS+ ++ + ++L + +R + LP+A+ Sbjct: 70 GRAVLSPA--------SAARSVVALRGWHRFLALDGLAPTDAAAELRPPAQPRRLPKAIG 121 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTL 188 L+D L + R+ A+L L+Y G RISEA+ L ++ D+ + Sbjct: 122 VDDVARLLDAAGLGDGP----VPLRDRALLELVYSTGARISEAVGLDVDDLDLTPDRGAV 177 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-------NPG 241 R+ GKG K R+VP+ +A+ Y +RG+P P Sbjct: 178 RLLGKGGKERVVPVGSYAAQAVDAYL------------------VRGRPALAAAGRGTPA 219 Query: 242 VF--QRYIRQLRRYLGLPLSTTA------------HTLRHSFATHLLSNGGDLRSIQSIL 287 +F R R R+ L T A HTLRHSFATHLL+ G D+R +Q +L Sbjct: 220 IFLNTRGARLSRQSAWAVLRTAAERAGLAADHLSPHTLRHSFATHLLAGGADVRVVQELL 279 Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 GH ++TTQIYT V D M E+Y +HP Sbjct: 280 GHASVATTQIYTLVTP----DTMREVYAASHP 307 >gi|157828362|ref|YP_001494604.1| site-specific tyrosine recombinase XerD [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933070|ref|YP_001649859.1| site-specific tyrosine recombinase XerD [Rickettsia rickettsii str. Iowa] gi|157800843|gb|ABV76096.1| tyrosine recombinase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908157|gb|ABY72453.1| integrase/recombinase (XerD/RipX family) [Rickettsia rickettsii str. Iowa] Length = 306 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 96/298 (32%), Positives = 153/298 (51%), Gaps = 28/298 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ L ER LSK ++ SY+ D F +LA + ++ I T IR +I + Sbjct: 7 FLEMLLAERALSKNSILSYKRDLFDFQNYLAKHKLSELNITT------ENIRDWIEYLAS 60 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS+ R +S IKS+ ++L T + +LN+ K N LP L+ Q + + Sbjct: 61 NDLQARSINRKISTIKSYYEFLISENHTAFNPVLNVDLPKYQNKLPEILSIAQ----IKS 116 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-------LRIQGK 193 +L H S + R +A+++LLY GLR+SE +SL +I+ ++++ + GK Sbjct: 117 LLEHCSQDNSPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNKTSKGEVRKIFSVLGK 176 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LF--RGIRGKPLNPGVFQRY 246 G+K R++ + +I +Y L D+ +N P LF + G + F Sbjct: 177 GNKERVIVINEQAVISIAKY--LAIRDVFVNKAKPRNLIYLFPSSALAGY-MTRQNFAIL 233 Query: 247 IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 ++ Y GL P + H LRHSFA+HLL G DLR IQ +LGH +STTQIYT++ + Sbjct: 234 LKSAALYAGLNPEYISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQT 291 >gi|146313613|ref|YP_001178687.1| site-specific tyrosine recombinase XerC [Enterobacter sp. 638] gi|145320489|gb|ABP62636.1| tyrosine recombinase XerC subunit [Enterobacter sp. 638] Length = 300 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 93/301 (30%), Positives = 150/301 (49%), Gaps = 23/301 (7%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L+ L IER LS +TL +Y+ RQ + E+I +++ +RA + + R + Sbjct: 14 LRYLGIERQLSPITLLNYQ---RQLDAIMQL--AEEIGLKSWPLCDAATVRALVVRSRRK 68 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 +G SL LS ++SF +L + + + K LP+ ++ VD+V Sbjct: 69 GLGPASLALRLSALRSFFDWLVSQGELNANPAKGISTPKAPRHLPKNID-------VDDV 121 Query: 142 --LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 LL+ + R+ A+L ++YG GLR+SE ++L +++ D + + GKG K R Sbjct: 122 NRLLNIDLNDP-LAVRDRAMLEVMYGAGLRLSELVNLDLKHLDLDTGEVWVMGKGSKERR 180 Query: 200 VPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +P+ + I + DL F N LF GK ++ Q+ + GL Sbjct: 181 LPIGRNAVAWIEHWLDLRGLFGAEEN---ALFLSKLGKRISARNVQKRFAEWGIKQGLNS 237 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ + +YD H Sbjct: 238 HVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDSAH 293 Query: 319 P 319 P Sbjct: 294 P 294 >gi|114771054|ref|ZP_01448494.1| tyrosine recombinase XerD [alpha proteobacterium HTCC2255] gi|114548336|gb|EAU51222.1| tyrosine recombinase XerD [alpha proteobacterium HTCC2255] Length = 308 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 95/314 (30%), Positives = 157/314 (50%), Gaps = 30/314 (9%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 N+L+ + ER SK TL +Y+ D F FL ++++I + + + +I +I Sbjct: 10 NFLETIHAERNASKNTLLAYKRDLEAFTRFL---SKKRIDLY---KANRKDIENYIISLD 63 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + + + R LS IK +Y + ++ ++ K LP L+E + Sbjct: 64 NHGMSESTRARHLSTIKQIYRYGYDESLIKDNPSNEIKGPKSKRKLPNYLSENEI----- 118 Query: 140 NVLLHTSHE---TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 N LL TS + + RN+ ++++LY G+R+SE +SL ++ + L I+GKG K Sbjct: 119 NKLLDTSTQIGRSPRDKKRNTCLMHVLYATGMRVSELVSLPVISVRGNPEMLLIKGKGGK 178 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGV----------FQR 245 R+VPL + AI Y D N ++ +G++ K L P F Sbjct: 179 ERLVPLSTPAKMAIAAYL----VDWNSQQEINKKKGLQESKFLFPSHSKLGHITRVRFYV 234 Query: 246 YIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 +I++L G+ P + HTLRH+FA+HLL+NG DLR IQ +LGH ++TT+IYT+V + Sbjct: 235 FIKELCIKAGISPNKVSPHTLRHAFASHLLANGADLRVIQMLLGHADVATTEIYTHVLDE 294 Query: 305 NGGDWMMEIYDQTH 318 N + E + H Sbjct: 295 NIKSLVFEHHPLAH 308 >gi|315633490|ref|ZP_07888780.1| tyrosine recombinase XerC [Aggregatibacter segnis ATCC 33393] gi|315477532|gb|EFU68274.1| tyrosine recombinase XerC [Aggregatibacter segnis ATCC 33393] Length = 296 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 98/313 (31%), Positives = 152/313 (48%), Gaps = 26/313 (8%) Query: 17 ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 E Q +L L IER +S TL +Y+ + + L + IQ +Q++ + +R ++ Sbjct: 4 ELQKYLTYLRIERQVSPHTLTNYQHQLVRVIAIL-----QDAGIQQWQQVTLSVVRYVLA 58 Query: 77 KRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 + Q + ++SL LS ++ FL YL + + + + K+ LP+ ++ Q Sbjct: 59 QSSKQDGLKEKSLALRLSALRRFLSYLVYQGQLKVNPAVGVSAPKQPKHLPKNIDRDQIQ 118 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L+ N S E ID R+ A++ L Y GLR+SE L +I +R+ GKG+ Sbjct: 119 LLLAN----DSKEP--IDIRDRAMIELFYSSGLRLSELQGLNLNSINLRVREVRVIGKGN 172 Query: 196 KIRIVPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 K RIVPL AI ++ + P D LF G ++ Q + + Sbjct: 173 KERIVPLGRYASHAIQQWLKVRLLFNPKDD------ALFVSQLGNRMSTRTIQMRLERWG 226 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 GL H LRHSFATH+L DLR++Q +LGH LSTTQIYT++N ++ D Sbjct: 227 IRQGLNSHLNPHKLRHSFATHMLEASSDLRAVQELLGHSHLSTTQIYTHLNFQHLAD--- 283 Query: 312 EIYDQTHPSITQK 324 +YD HP +K Sbjct: 284 -VYDAAHPRAKRK 295 >gi|315655289|ref|ZP_07908190.1| tyrosine recombinase XerD [Mobiluncus curtisii ATCC 51333] gi|315490544|gb|EFU80168.1| tyrosine recombinase XerD [Mobiluncus curtisii ATCC 51333] Length = 327 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 98/329 (29%), Positives = 159/329 (48%), Gaps = 25/329 (7%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL---AFYTEEK 57 M P++V ELL Q +L L +ERG S T+ +Y D R+++ FL + ++ Sbjct: 1 MGSRPAPDLVCPELLNP-QPYLDYLAVERGASPHTVAAYTRDLRRYITFLVANGVNSLDE 59 Query: 58 ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117 +T+ + + F + S +R+++ ++S+ +Y + + + Sbjct: 60 VTLPVLESFARALEAGFGDY---AAVAPSSARRAIASVRSWHRYAYETGAVRANPTKGIA 116 Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSL 176 K LP L ++ TL L + T +A R+ A+L LY G RISEA++L Sbjct: 117 PAKVGAHLPTVLTVEEVQTL-----LEAASATGDDNALRDRALLEFLYATGARISEAVNL 171 Query: 177 TPQNI-MDDQSTL-RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLF 230 +I +D++ L R+ GKG K R+ +L + K LE Y L L Q +F Sbjct: 172 AVDDIDLDEEIPLVRLFGKGRKERLS-MLGHLAKDALEAY-LVRVRPRLAEKGRSQGRVF 229 Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290 G+PL+ I+ + + + + HTLRH FATHLL G D+R++Q +LGH Sbjct: 230 LNTLGRPLSRQSAWAIIQAVAQRAQITVPVGPHTLRHCFATHLLQGGADVRAVQELLGHA 289 Query: 291 RLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 ++TTQIYT V + D + E+Y HP Sbjct: 290 SVTTTQIYTKVTN----DMIREVYASAHP 314 >gi|223044229|ref|ZP_03614266.1| tyrosine recombinase XerC [Staphylococcus capitis SK14] gi|222442379|gb|EEE48487.1| tyrosine recombinase XerC [Staphylococcus capitis SK14] Length = 296 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 89/306 (29%), Positives = 158/306 (51%), Gaps = 24/306 (7%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 ++ +L L++ER S+ TL+SY D QF FL E + + T Y + R ++S Sbjct: 5 QKTFLYMLKVERNFSEYTLKSYHDDLIQFNDFLV---SEHLDLAT---FEYKDARNYLSF 58 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 + + ++ R +S +++F +Y + + + + + + KK LP+ E++ Sbjct: 59 LYSHNLKRTTVSRKISTLRTFYEYWMTQDESIVNPFVQLVHPKKEQYLPQFFYEEEM--- 115 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 L T + R+ I+ LLY G+R+SE +++ ++I + +++ GKG+K Sbjct: 116 --EALFQTVKQDSKKGIRDRVIIELLYATGIRVSELVNIKIKDIDMNLPGVKVLGKGNKE 173 Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQ--LRRY 253 R +P +++I Y D P N + L + + G P+ GV RY+ ++R Sbjct: 174 RFIPFGEFCKQSIERYLDEFQPRKTNDHEYLIV--NMNGAPITERGV--RYVLNDVVKRT 229 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++ + ++ Sbjct: 230 AGVT-DIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQ----LRKV 284 Query: 314 YDQTHP 319 Y HP Sbjct: 285 YLNAHP 290 >gi|319441371|ref|ZP_07990527.1| integrase/recombinase [Corynebacterium variabile DSM 44702] Length = 313 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 87/322 (27%), Positives = 146/322 (45%), Gaps = 31/322 (9%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +L+ L++ +G S T+++Y D R F T + T+ R + + +K Sbjct: 7 GYLEYLDLVKGRSANTVRAYGADLRA--AFEGVRTLDGFTLDHCRDVLDWAVENGDAKA- 63 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 +L R S ++ F +L + + ++ K S +LPR L E Q +++ Sbjct: 64 -------TLARIASSLRGFGSWLVHTGVLQVNPAAGLQTPKTSRTLPRVLREDQVGGVLE 116 Query: 140 NVLLHTSHETKWIDA-------RNSAILYLLYGCGLRISEALSLTPQNIMDDQS----TL 188 H E D R+ +L +LY G+R+SE +++ + +L Sbjct: 117 QARAHAHREPSEGDPGPTPKDIRDWVMLEVLYATGIRVSELAGADVEDLGGNGDPGSRSL 176 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 R+ GKGDK R+VP P+V A+ E+ L + Q LF G RG ++ Sbjct: 177 RVVGKGDKTRVVPFGPTVEAALHEWLAVRAGMLPASGVTRAAQPALFLGARGGRIDVRQV 236 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + + + G+P H LRHS AT +L G DLR +Q +LGH ++TTQIYT+V + Sbjct: 237 RTVVHRATGGAGVP-EIAPHGLRHSAATAVLDGGADLRVVQQLLGHTSMNTTQIYTHVGT 295 Query: 304 KNGGDWMMEIYDQTHPSITQKD 325 + + +Y + HP +D Sbjct: 296 ER----LRVVYKRAHPRSGSQD 313 >gi|256847147|ref|ZP_05552593.1| tyrosine recombinase XerD [Lactobacillus coleohominis 101-4-CHN] gi|256715811|gb|EEU30786.1| tyrosine recombinase XerD [Lactobacillus coleohominis 101-4-CHN] Length = 296 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 90/315 (28%), Positives = 152/315 (48%), Gaps = 34/315 (10%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 ++ Q++ Q L +ERGLS T+QSY+ D ++ + F ++ + I + + + A + Sbjct: 3 QDVQDFSQFLLVERGLSNNTIQSYQNDLKKAAEY--FTSQNLSSWGDIDRYAVLNLLAHL 60 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 + + ++ R +S ++ F +YL ++ + + K LP L + + Sbjct: 61 TNLGQSRT---TIGRQVSSLRQFYQYLLRQHRVMNDPMALVTIPKGQRHLPTVLTQDEV- 116 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 +L K + R+ AIL ++Y G+R+SE +L ++ D ++ +GKGD Sbjct: 117 ----RRMLAVPDTGKKMGIRDRAILEVMYATGMRVSELTNLRLNDLHLDVHLVQPRGKGD 172 Query: 196 KIRIVPL-----------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 K RI+P+ L SVR L F +F R K L Sbjct: 173 KERIIPIGEVAESWLNRYLHSVRAPQLANKPASDF---------VFLNARAKQLTRQAIW 223 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + I++ + + T HT+RHSFATHLL NG DLR +Q +LGH ++TTQIYT+V+ K Sbjct: 224 QLIKKTAQAAKIDKDVTPHTMRHSFATHLLENGADLRVVQELLGHSDITTTQIYTHVSQK 283 Query: 305 NGGDWMMEIYDQTHP 319 ++ +Y THP Sbjct: 284 R----LLTVYKNTHP 294 >gi|111017946|ref|YP_700918.1| site-specific tyrosine recombinase XerD [Rhodococcus jostii RHA1] gi|110817476|gb|ABG92760.1| tyrosine recombinase [Rhodococcus jostii RHA1] Length = 308 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 88/310 (28%), Positives = 151/310 (48%), Gaps = 11/310 (3%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE--- 70 + ++ ++L +L +ERG ++ TL SY D ++ FLA E I IR+ ++ Sbjct: 3 IARQVDSYLDHLAVERGAARNTLGSYRRDLERYTQFLA--DRELTDIDRIREQDVSDFVI 60 Query: 71 -IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 +R+ R + S R+L ++ F ++ +T ++R + LP++L Sbjct: 61 ALRSGDPNRELPPLAASSAARALIAVRGFHRFAAAEGMTAVDVARDVRPPSPAKRLPKSL 120 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 + L L++ V + R+ A+L LLY G RISEA+ L ++ + ++ Sbjct: 121 PVNEVLALLEAVGGSGPADGPRA-VRDRALLELLYSTGARISEAVGLDVDDVDTETRSVL 179 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 ++GKG K R+VP+ +++ Y L LF +RG L+ + ++ Sbjct: 180 LRGKGGKQRVVPVGRPAVESLDAYLIRGRPALASRGTPALFLNVRGGRLSRQSAWKVLQA 239 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 G+ + + HTLRHSFATHLL G D+R +Q +LGH ++TTQIYT V Sbjct: 240 AADAAGISSAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVGA---- 295 Query: 310 MMEIYDQTHP 319 + E++ HP Sbjct: 296 LREVWAGAHP 305 >gi|116629573|ref|YP_814745.1| integrase [Lactobacillus gasseri ATCC 33323] gi|282852048|ref|ZP_06261406.1| tyrosine recombinase XerC [Lactobacillus gasseri 224-1] gi|116095155|gb|ABJ60307.1| tyrosine recombinase XerC subunit [Lactobacillus gasseri ATCC 33323] gi|282556808|gb|EFB62412.1| tyrosine recombinase XerC [Lactobacillus gasseri 224-1] Length = 307 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 96/319 (30%), Positives = 149/319 (46%), Gaps = 24/319 (7%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECD---TRQFLIFLAFYTEEKITIQTIRQLSYT 69 +L+K+ Q++L ER SK T+ SY D +QF +E ++ Sbjct: 7 KLIKQFQDYLN---YERNYSKNTVSSYLNDLDEAKQFF-------KENGGFGGWDKVKSR 56 Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 ++ F+ Q + R +S ++SF ++L KR++ + + LP+ Sbjct: 57 DVEIFLQSLAAQNRSRTTQARKMSSLRSFYRFLVKREVLENDPMQTISLRLGEKKLPQFF 116 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 EK+ + D++ H + RN A+ L Y G+R+SE SL I D + Sbjct: 117 YEKEMRQVFDSLAGHDK-----LVVRNRAMFELFYATGMRLSEMASLKLDQIDFDLKIIL 171 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLP-LFRGIRGKPLNPGVFQRYI 247 + GKG+K R VP A+ EY D L N L +F RG+ L + + Sbjct: 172 VHGKGNKDRYVPFGKDALDALREYRDDVRLALLGQNEDLGYVFLNNRGQKLTGRGIEYIM 231 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 +Q+ G+ H LRHSFAT +L+NG DLRS+Q +LGH LSTTQIYT+V K+ Sbjct: 232 QQVFIKAGVGGKVHPHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKH-- 289 Query: 308 DWMMEIYDQTHPSITQKDK 326 + Y + P +KD+ Sbjct: 290 --LQADYQKFFPRKDKKDE 306 >gi|332531493|ref|ZP_08407395.1| tyrosine recombinase XerD subunit [Hylemonella gracilis ATCC 19624] gi|332039045|gb|EGI75469.1| tyrosine recombinase XerD subunit [Hylemonella gracilis ATCC 19624] Length = 322 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 92/313 (29%), Positives = 154/313 (49%), Gaps = 26/313 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 ++ L +E GLS+ TL +Y D + +LA E K + QT+ ++ A+ + R Sbjct: 20 FIDALWLEEGLSRNTLAAYRRDLALYARWLAEPREGKAS-QTLDASGEPDLNAYFAARHA 78 Query: 81 QKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q + R L+ K + ++ +++R+I + L + + K+ +P+ L+E Q Sbjct: 79 QTRAT-TANRRLTVFKRYFRWAVRERRIQADPT-LRLLSAKQPLRVPKTLSEAQV----- 131 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 LL + R+ A+L L+Y GLR+SE + L N+ ++ LR+ GKG K R+ Sbjct: 132 EALLAAPDAATPLGLRDRAMLELMYASGLRVSELVGLKIFNVGLNEHVLRVTGKGSKERL 191 Query: 200 VPL-----------LPSVRKAILEYYDLCPFDLNLNIQLPL-FRGIR-GKPLNPGVFQRY 246 VP L R +L P L + RG R G+ + +F Sbjct: 192 VPFGEVAADWMRRYLHEARPELLGQVGASPRAAKQTDDLFVTLRGSRAGEAMTRVMFWSL 251 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 +++ G+ + HTLRH+FATHLL++G DLR++Q +LGH +STT IYT+V + Sbjct: 252 VKKYAVIAGVTSPLSPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVARER- 310 Query: 307 GDWMMEIYDQTHP 319 + ++ Q HP Sbjct: 311 ---LKTLHAQHHP 320 >gi|56459934|ref|YP_155215.1| site-specific recombinase [Idiomarina loihiensis L2TR] gi|56178944|gb|AAV81666.1| Site-specific recombinase [Idiomarina loihiensis L2TR] Length = 300 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 84/297 (28%), Positives = 141/297 (47%), Gaps = 15/297 (5%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 ++L + G S T +Y D R++ +L + + + ++ ++ RR Q Sbjct: 17 EHLWLHHGSSNNTQAAYRSDLRRYCEYLLSLKKSLMDTDEV------VLQDYLLWRRMQG 70 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 + RS R LS K F ++ K++ ++ K S+P +L+E+ ++L++ Sbjct: 71 LSPRSTSRFLSSTKKFFQFAVKQQWVAVDPTARLKRPKLPQSIPHSLSEEDVISLLEQPD 130 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202 T I R+ +L +LY GLR++E + L + Q +R+ GKG+K R+VPL Sbjct: 131 TETP-----IGLRDRTMLEVLYATGLRVTELIRLQYDQLSRQQGLVRVIGKGNKERLVPL 185 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 + + Y + +F RG L F ++ G+ + Sbjct: 186 GEDALEWLDNYLKHGRPAITDKSSPWIFVTQRGSLLTRQAFWYRLKHYAEEAGIYAHLSP 245 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT V + + ++ Q HP Sbjct: 246 HTLRHAFATHLLNHGADLRVLQLLLGHSDLSTTQIYTQVARER----LQALHAQHHP 298 >gi|296273032|ref|YP_003655663.1| integrase family protein [Arcobacter nitrofigilis DSM 7299] gi|296097206|gb|ADG93156.1| integrase family protein [Arcobacter nitrofigilis DSM 7299] Length = 312 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 92/294 (31%), Positives = 148/294 (50%), Gaps = 16/294 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++ + + E+ L+ TL +Y D +QF AF E ++I + + ++ +I Sbjct: 8 KDFFFHCQFEKNLNPKTLNAYTIDIKQFK---AFNNIETLSINDVDK---DVLKEYIRHL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTL 137 + + +S+KR L+ +KSF YL+ +I S MR ++K+ SLP+ ++ + L Sbjct: 62 YSIDLKPKSIKRKLATLKSFFNYLEFEEIILVSPFRKMRISIKEQKSLPKTIDIRNIRKL 121 Query: 138 VDNV--LLHTSHETKWID----ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 V + + ET+ R+ AIL LL+ GLR+SE ++ NI +RI Sbjct: 122 FKYVYKIKSNNKETESFSYKTIVRDIAILELLFATGLRVSEVSNMKYSNIDLSSGNIRIL 181 Query: 192 GKGDKIRIVPLLPSVRKAIL-EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 GKG+K R + + K IL EY+ L ++ N F G L+ I++ Sbjct: 182 GKGNKERTIQICDQEVKLILKEYFSLFKDEIYKN--KCFFINRLGNKLSEQSISNMIKKY 239 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 ++ + T H RHSFAT LL G D+R IQ +LGH +STTQIYT +N K Sbjct: 240 QKNANVGQHLTPHMFRHSFATMLLEEGVDIRYIQGMLGHSSISTTQIYTQINMK 293 >gi|104784270|ref|YP_610768.1| site-specific tyrosine recombinase XerC [Pseudomonas entomophila L48] gi|123380751|sp|Q1I301|XERC_PSEE4 RecName: Full=Tyrosine recombinase xerC gi|95113257|emb|CAK17985.1| site-specific tyrosine recombinase, integrase family [Pseudomonas entomophila L48] Length = 299 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 92/313 (29%), Positives = 152/313 (48%), Gaps = 35/313 (11%) Query: 17 ERQ--NWLQNLEIERGLSKLTLQSYECDTRQFLIFL---AFYTEEKITIQTIRQLSYTEI 71 ERQ + +L ER +S TL +Y D + + F + + +Q +RQL Sbjct: 2 ERQLEAYCAHLRNERQVSGHTLLAYRRDLEKVIEFCNNQGIAGWDALQVQQLRQL----- 56 Query: 72 RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131 ++++ RSL R LS ++ +YL + + + K LP+ L+ Sbjct: 57 ---VARQHHHGQSSRSLARLLSAVRGLYRYLNREGLCQHDPANGLAPPKGERRLPKTLDT 113 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 +AL L+D + + +I R+ AIL L Y GLR+SE L +++ +++ Sbjct: 114 DRALQLLDGGV-----DDDFIARRDQAILELFYSSGLRLSELAGLDLEHLDLTGGLVQVL 168 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 GKG K R++P+ +A+ E++ L P D +F +G L+ Q + Sbjct: 169 GKGGKSRVLPVGRKACEALQEWFRLRGIAAPRDG------AVFITRQGNRLSTRAIQMRV 222 Query: 248 RQL-RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 + R LG L H LRHSFA+HLL + DLR++Q +LGH +STTQIYT+++ ++ Sbjct: 223 KTFGERELGQHLHP--HMLRHSFASHLLESSQDLRAVQEMLGHADISTTQIYTHLDFQH- 279 Query: 307 GDWMMEIYDQTHP 319 + +YD HP Sbjct: 280 ---LAAVYDSAHP 289 >gi|308051404|ref|YP_003914970.1| tyrosine recombinase XerC [Ferrimonas balearica DSM 9799] gi|307633594|gb|ADN77896.1| tyrosine recombinase XerC [Ferrimonas balearica DSM 9799] Length = 296 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 90/301 (29%), Positives = 150/301 (49%), Gaps = 17/301 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 LE ER S T+++Y + + L L + + + L +A ++K Q + Sbjct: 12 LENERQYSAYTVRNYLKELERALPLL-----QAQGLTDWQGLRTQHCQALLAKLHRQGLS 66 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 RSL +LS ++ +K+L + T ++ ++ K+ LP+ L+ Q N LL Sbjct: 67 PRSLSLTLSALRQLIKFLLREGTLTHDPMVGVQAPKQGRPLPKNLDVDQV-----NRLLE 121 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSL-TPQNIMDDQSTLRIQGKGDKIRIVPLL 203 + + + R+ A++ L Y GLR++E ++L PQ + D+ +R+ GKG K RI+P+ Sbjct: 122 LNDDDPLV-IRDRAMMELFYSSGLRLAELVALDCPQLSLTDRE-VRVMGKGGKERILPVG 179 Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 + + +Y L P L LF RG ++ Q + + + L H Sbjct: 180 NKASEWLAKYLALRPALLKGKECAALFLSNRGSRISRRSVQARLTEWGQSQALDSKVHPH 239 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323 LRHSFATHLL DLR++Q +LGH LSTTQIYT+++ ++ + +YD HP + Sbjct: 240 KLRHSFATHLLEASKDLRAVQELLGHANLSTTQIYTHLDFQH----LASVYDTAHPRAKK 295 Query: 324 K 324 K Sbjct: 296 K 296 >gi|38234089|ref|NP_939856.1| site-specific tyrosine recombinase XerC [Corynebacterium diphtheriae NCTC 13129] gi|38200351|emb|CAE50037.1| Putative integrase/recombinase [Corynebacterium diphtheriae] Length = 302 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 83/305 (27%), Positives = 147/305 (48%), Gaps = 24/305 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++ + L++ G S T++SY+ D F+ A T+ Q + +R ++++ Sbjct: 11 DFCEYLDLGLGRSPATVRSYKSDLFGFVNRFA----------TLDQFTLDNVREWLAQAV 60 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 ++ R + IK+F +L + + K +LP ++E+ + Sbjct: 61 ADGKSRATIARRTASIKAFSGWLLRNGYNDIDVAARLVAPKVQRTLPMVVSERT----MT 116 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 N++ + T+ R+ AI LLY G+R+SE L ++ + T R+ GKG+K R+ Sbjct: 117 NIVEKPASTTEDTFVRDRAICELLYASGIRVSELCGLNTGDVDLKRQTARVTGKGNKQRV 176 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPLNPGVFQRYIRQLRRYL 254 VP A+ + + ++ ++ LF G+RGK ++P +R + + Sbjct: 177 VPFGDQATAALSHWLNGVRSEMLISAGCTSGVDALFVGVRGKRIDPRQVRRIVETSGQEH 236 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ H LRH+ ATHLL NG DLR +Q +LGH L+TTQIYT+V+++ + E Y Sbjct: 237 GIG-GLAPHALRHTAATHLLDNGADLRVVQEMLGHSSLNTTQIYTHVSTQR----LKEAY 291 Query: 315 DQTHP 319 HP Sbjct: 292 KNAHP 296 >gi|325280617|ref|YP_004253159.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712] gi|324312426|gb|ADY32979.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712] Length = 307 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 91/314 (28%), Positives = 162/314 (51%), Gaps = 30/314 (9%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLA----FYTEEKITIQTIRQLSYT------ 69 ++L+N+ + S LT+ +Y+ D QF F +E+IT + +R+ Sbjct: 8 SYLKNI---KRYSALTITAYKEDLNQFREFCEKVELIRQDEEITSKMVRRFEMGLMSGGL 64 Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 +I + + + + RS++R LS ++++ +YL + TE + K LP + Sbjct: 65 KIGGVDGEEKLRPMTARSVRRKLSSLRTYFRYLVREGKLTEDPTEIVVAPKMGKRLPVFV 124 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 + Q +D VL + + + + R+ +L Y G+R SE ++L +++ + + +R Sbjct: 125 PDYQ----MDEVLDKHASDKDFANIRDRMVLMTAYYTGMRRSELVALKLEDVDLEGAVIR 180 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 + GKGDK RIVP+LP + + Y + + Q +F +GKP V+ ++I + Sbjct: 181 VNGKGDKQRIVPMLPELAGDLRIYLNKREELVGEKHQF-VFVTDKGKP----VYDKFIYR 235 Query: 250 LR-RYLGLPLS---TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 L +YLG S + H LRHSFAT LL+NG + +I+ +LGH L+ TQIYT+ N Sbjct: 236 LAVKYLGEVTSLKKRSPHVLRHSFATALLNNGACIEAIRELLGHAGLAATQIYTH----N 291 Query: 306 GGDWMMEIYDQTHP 319 + + ++Y+Q HP Sbjct: 292 SFESLKKVYNQAHP 305 >gi|229494828|ref|ZP_04388582.1| tyrosine recombinase XerD [Rhodococcus erythropolis SK121] gi|229318266|gb|EEN84133.1| tyrosine recombinase XerD [Rhodococcus erythropolis SK121] Length = 307 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 90/316 (28%), Positives = 148/316 (46%), Gaps = 23/316 (7%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 L ++ ++L +L +ERG ++ TL SY D ++ +L I + ++ ++ Sbjct: 2 LARQVDSYLDHLAVERGSARNTLLSYRRDLNRYAEYL-----NGRGIDDVAGVTENDVTE 56 Query: 74 FISKRRTQKIGDR----------SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 F++ R +GD+ S R+L ++ F K+ + + ++ Sbjct: 57 FVTHLR---LGDKDAGVVPLAASSAARTLIAVRGFHKFSAAEGLVSVDVARTVKPPTPGR 113 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 LP+AL + L+D + + D R+ A+L LLY G RI+EA+ L +I Sbjct: 114 KLPKALPLDDVIALLDASGGGAAGDGPR-DLRDRALLELLYSTGARITEAIDLDVDDIDT 172 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 + ++ ++GKG K RIVP+ A+ Y L LF RG L+ Sbjct: 173 ETRSVLLKGKGGKQRIVPVGRPAIAAVDAYLVRGRPSLATRGVPALFLNARGGRLSRQSA 232 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + ++ G+ + HTLRHSFATHLL G D+R +Q +LGH ++TTQIYT V Sbjct: 233 WQILQDAAASAGIKADVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTV 292 Query: 304 KNGGDWMMEIYDQTHP 319 M E++ Q HP Sbjct: 293 TA----MREVWAQAHP 304 >gi|108799908|ref|YP_640105.1| site-specific tyrosine recombinase XerD [Mycobacterium sp. MCS] gi|119869018|ref|YP_938970.1| site-specific tyrosine recombinase XerD [Mycobacterium sp. KMS] gi|108770327|gb|ABG09049.1| tyrosine recombinase XerD subunit [Mycobacterium sp. MCS] gi|119695107|gb|ABL92180.1| tyrosine recombinase XerD subunit [Mycobacterium sp. KMS] Length = 318 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 92/326 (28%), Positives = 155/326 (47%), Gaps = 26/326 (7%) Query: 7 PEIVSFELLKER-QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT---IQT 62 P V L ++ Q +L +L IERG++ TL SY D R++ E +T ++ Sbjct: 3 PSAVRRSALDDQLQGYLDHLTIERGVAANTLSSYRRDLRRY--------SEHLTGRGVED 54 Query: 63 IRQLSYTEIRAF-ISKRR------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115 + +++ +++ F ++ RR Q + S R+L ++ ++ +T Sbjct: 55 LAKVTESDVSDFLVALRRGDPDTGAQALSAVSAARALIAVRGLHRFATAEGLTDVDVARA 114 Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175 ++ LP++L+ + L L+D S + RN A+L LLY G RISEA+ Sbjct: 115 VKPPTPGRRLPKSLSIDEVLALLDGAG-GDSEADGPLTLRNRALLELLYSTGARISEAVG 173 Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGI 233 L ++ ++ ++GKG K R+VP+ A+ Y DL + +F Sbjct: 174 LDIDDVDTHARSVLLRGKGGKQRLVPIGRPAVSALDAYLVRGRPDLARRGRGTPAIFLNA 233 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 RG L+ + ++ G+ + + HTLRHSFATHLL G D+R +Q +LGH ++ Sbjct: 234 RGGRLSRQSAWQVLQDAAERAGITSAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVT 293 Query: 294 TTQIYTNVNSKNGGDWMMEIYDQTHP 319 TTQIYT V + E++ HP Sbjct: 294 TTQIYTMVTVHA----LREVWAGAHP 315 >gi|295095176|emb|CBK84266.1| tyrosine recombinase XerC subunit [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 300 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 88/299 (29%), Positives = 148/299 (49%), Gaps = 19/299 (6%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L+ L +ER LS +TL +Y+ RQ + E I +++ +Q +R F+ + R + Sbjct: 14 LRYLGVERQLSPITLLNYQ---RQLDAIMQIADE--IGLKSWQQCDAATVRGFVVRSRKK 68 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 + SL LS ++SF +L + + + K LP+ ++ L+D Sbjct: 69 NLSPASLALRLSALRSFFDWLVSQGGLKANPAKGIATPKAPRHLPKNIDVDDVNRLLDID 128 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 L + R+ A+L ++YG GLR+SE ++L +++ + + + GKG K R +P Sbjct: 129 L------NDPLAVRDRAMLEVMYGAGLRLSELVNLDLKHLDLESGEVWVMGKGSKERRLP 182 Query: 202 LLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 + + I + DL F + + LF GK ++ Q+ + GL Sbjct: 183 IGRNAVSWIEHWLDLRGLFGADED---ALFLSKLGKRISARNVQKRFAEWGIKQGLNSHV 239 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ + +YD HP Sbjct: 240 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHP 294 >gi|237654487|ref|YP_002890801.1| tyrosine recombinase XerC [Thauera sp. MZ1T] gi|237625734|gb|ACR02424.1| tyrosine recombinase XerC [Thauera sp. MZ1T] Length = 304 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 88/307 (28%), Positives = 146/307 (47%), Gaps = 21/307 (6%) Query: 15 LKER-QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 L ER Q WL L +R +S LTL +Y + L + E L +IR Sbjct: 13 LPERMQAWLAWLATQRRVSPLTLTAYRAGLQALLRLAEEHPPES--------LQPADIRR 64 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 F+++ + RS+ R LS + F ++L + + L +R K ++LPR L+ +Q Sbjct: 65 FVARLHGEGQQGRSIARHLSAWRGFYRWLVREHGVRINPALGIRPPKSPSTLPRVLSPEQ 124 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQG 192 A L+D ++ R+ A+ L Y GLR++E L + +D + + + G Sbjct: 125 ANALLD------PEPQNLLEIRDIAMFELFYSSGLRVAELAGLDIDSGLDLAEGLVTVTG 178 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 K + R VP+ A+ + ++ L + LF G L+ + + Sbjct: 179 KRQRQRTVPVGGKAIAALRPWLEIR-AGLAAAGERALFVTRDGHRLSTRGIASRLGTRAQ 237 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 LGL + H LRHSFA+HLL + GDLR++Q +LGH + +TQIYT+++ ++ + Sbjct: 238 ALGLGVHVHPHMLRHSFASHLLQSSGDLRAVQELLGHASIRSTQIYTHLDFQH----LAA 293 Query: 313 IYDQTHP 319 +YD HP Sbjct: 294 VYDAAHP 300 >gi|291536378|emb|CBL09490.1| tyrosine recombinase XerD subunit [Roseburia intestinalis M50/1] gi|291538752|emb|CBL11863.1| tyrosine recombinase XerD subunit [Roseburia intestinalis XB6B4] Length = 294 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 88/301 (29%), Positives = 148/301 (49%), Gaps = 16/301 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++++ + E+ SK T SYE D R+ +L E + + ++ T + A++ Sbjct: 7 DFIEYIHNEKQTSKNTEVSYERDLRKMNEYL-----EAQNVYGVSAVTETNLNAYVMFLE 61 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + ++ RS++ +K+F +L+K + ++ K ++PR L ++ L++ Sbjct: 62 REGRKPATVSRSIASMKAFFHFLEKERRIESDPAWRLKAPKIEKTMPRILTTEEVTLLLE 121 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 +T E R+ A+L LLY G+R+SE +SL + ++ Q I K RI Sbjct: 122 QPSGNTPKEL-----RDKAMLELLYATGIRVSELISLKVSD-LNLQMEYVICTDIHKERI 175 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +P R+A+ Y L P LF G ++ F + I+ + G+ Sbjct: 176 IPFGNVAREALTRYMQDGRDHLISQADCPWLFTNCTGGAMSRQGFWKLIKFYGKKAGIES 235 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 T HTLRHSFA HL+SNG DL+S+Q +LGH +STTQIY S+ G + E+Y + H Sbjct: 236 EITPHTLRHSFAAHLISNGADLKSVQEMLGHSDISTTQIY----SQMGQGRIREVYLKAH 291 Query: 319 P 319 P Sbjct: 292 P 292 >gi|255068446|ref|ZP_05320301.1| tyrosine recombinase XerC [Neisseria sicca ATCC 29256] gi|255047288|gb|EET42752.1| tyrosine recombinase XerC [Neisseria sicca ATCC 29256] Length = 303 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 81/299 (27%), Positives = 147/299 (49%), Gaps = 17/299 (5%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87 ++G S TL +Y D + + L K + +T + L + A + + Q + +R+ Sbjct: 19 QQGKSAHTLSAYGRDLTELVRLLT-----KGSSETAQDLKRRDFVAALKRLSQQGLSERT 73 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 L R LS + + +L + + N++ + LP+AL +++ ++D+ S Sbjct: 74 LARKLSAWRQYCGWLVQSGMMDNDPTFNLKASRLPERLPKALPQEELNHMLDSAPADDS- 132 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207 + R+ A+ L+YG GLR+SE L +++ D+ + + GKG K R +PL Sbjct: 133 ----LAVRDHALFELMYGSGLRLSEIHGLDLGDVLLDEGWVSVTGKGRKERQIPLSGKSV 188 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 +A+ Y + + + LF G G L Q+ ++ G + H +RH Sbjct: 189 EALRAY---LSERVAADGETALFTGKNGTRLGQRQIQKRLQAWAVQQGSGQHISPHMMRH 245 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326 S+A+HLL + D+R++Q +LGH LSTTQIYT ++ D + ++YD+ HP +K + Sbjct: 246 SYASHLLQSSRDIRAVQELLGHSNLSTTQIYTKLDF----DHLAKVYDEGHPRAKRKSE 300 >gi|237809853|ref|YP_002894293.1| tyrosine recombinase XerC [Tolumonas auensis DSM 9187] gi|237502114|gb|ACQ94707.1| tyrosine recombinase XerC [Tolumonas auensis DSM 9187] Length = 309 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 97/314 (30%), Positives = 157/314 (50%), Gaps = 24/314 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +L+ L +ER LS TL +Y+ R + + E++I Q +L+ +R + Sbjct: 10 HTYLEYLRVERQLSAHTLSNYQ---RHLQALIEWLQEKQI--QDWGELNNPLVRQWAHTL 64 Query: 79 RTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 R K R++ +S ++SF +L R I + + K LP+ L+ Sbjct: 65 RKHKDTSPRTISTKMSALRSFADWLVIRGILAANPARGVALPKLGRPLPKNLD------- 117 Query: 138 VDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 VD V LL+ + E+ + R+ AI+ L Y G+R+SE ++L ++ +R+ GKG+ Sbjct: 118 VDQVHQLLNITDESDPLVVRDRAIMELFYSTGMRLSELVALDLNDLDMTSRQVRVIGKGN 177 Query: 196 KIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 K RI LP R A+ LE + L + LF R + + + + I Q + Sbjct: 178 KERI---LPVGRLALEWLEKWLRTRTAFLLEGETALFLSSRKRRITARMVEIRIEQWGQK 234 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 L H LRHSFATH+L + GDLR++Q +LGH L+TTQIYT+++ ++ + + Sbjct: 235 QTLNSHVHPHKLRHSFATHMLESSGDLRAVQELLGHANLATTQIYTHLDFQH----LAAV 290 Query: 314 YDQTHPSITQKDKK 327 YDQTHP +K K Sbjct: 291 YDQTHPRSKRKKLK 304 >gi|290513161|ref|ZP_06552523.1| tyrosine recombinase XerC [Klebsiella sp. 1_1_55] gi|289774372|gb|EFD82378.1| tyrosine recombinase XerC [Klebsiella sp. 1_1_55] Length = 300 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 90/301 (29%), Positives = 152/301 (50%), Gaps = 23/301 (7%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQF--LIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 L+ L +ER LS +TL +Y+ RQ LI LA ++ +++ +Q ++R+F + R Sbjct: 14 LRYLGVERQLSPITLTNYQ---RQLDALIVLA----DEAGLKSWQQCDAAQVRSFAVRSR 66 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 +G SL LS ++SF ++ + + + K LP+ ++ L+D Sbjct: 67 RAGLGPASLALRLSALRSFFDWMVSQGELAANPAKGIAAPKIPRHLPKNIDVDDVNRLLD 126 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 L + R+ A+L ++YG GLR+SE ++L +++ + + + GKG K R Sbjct: 127 IDL------NDPLAVRDRAMLEVMYGAGLRLSELVNLDIKHLDLESGEVWVMGKGSKERR 180 Query: 200 VPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +P+ + I + DL F + + LF GK ++ Q+ + GL Sbjct: 181 LPIGRNAVAWIEHWLDLRGLFGTDDD---ALFLSKLGKRISARNVQKRFAEWGIKQGLNS 237 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ + +YD H Sbjct: 238 HVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDAAH 293 Query: 319 P 319 P Sbjct: 294 P 294 >gi|91201862|emb|CAJ74922.1| similar to site-specific recombinase [Candidatus Kuenenia stuttgartiensis] Length = 295 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 95/303 (31%), Positives = 152/303 (50%), Gaps = 19/303 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI--SK 77 +++ L +E G + T+ Y+ D + F+ FL + TIR I +FI K Sbjct: 7 SFINYLLVECGSAMNTIHGYQSDLQLFIKFLLGKNIHDFS--TIRP---NIITSFIISEK 61 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 R Q + S+ R++ I+ F K+L ++ ++++ + K LP + + Sbjct: 62 HRGQSVN--SINRAIVSIRMFYKFLILEGKLQKNPLVSLDSPKLWKKLPYVV----PIHK 115 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 ++++L +TK + RN AIL LLY G R+SE +++ I + ++ +GKG K Sbjct: 116 IEDLLSAADVKTK-LGIRNKAILELLYATGARVSEVATISLNGINLEYGYIKCKGKGSKE 174 Query: 198 RIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 RIVPL AI EY P + LF G+PL ++ G+ Sbjct: 175 RIVPLGKKASIAIQEYLTTVRPQIKDSQNSHYLFLSRTGRPLRRENIWLIVKNCALKAGI 234 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + + H LRHSFATHLL NG DLR++Q +LGH +STTQIYT+VN ++ + I+ + Sbjct: 235 TEAISPHKLRHSFATHLLENGADLRAVQEMLGHVSISTTQIYTHVNKQH----LKAIHQK 290 Query: 317 THP 319 HP Sbjct: 291 FHP 293 >gi|91786958|ref|YP_547910.1| phage integrase [Polaromonas sp. JS666] gi|91696183|gb|ABE43012.1| phage integrase [Polaromonas sp. JS666] Length = 358 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 82/317 (25%), Positives = 150/317 (47%), Gaps = 25/317 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+++ +E+ L+ T++ Y D + + + ++ T +R ++++ Sbjct: 27 ERYLEHVRVEKRLASRTVELYALDLHKL------EANARQAGVALTEVHSTHMRRWVAQM 80 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + LSG + F +L + + + + ++R+ K + LP+AL+ +A+ L Sbjct: 81 HGAGRSGRGIALILSGWRGFYAWLGREGLVPANPVQDVRSPKVAKPLPKALSVDEAVQLA 140 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT------PQNIMD-DQSTLRIQ 191 + ++AR+ I LLYGCGLRI E + L + +D D + + Sbjct: 141 S--YQSDDEDDPHLEARDQCITELLYGCGLRIGELVGLDVRASAQARGWVDMDAAEAHVL 198 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDL------CPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245 GKG K R VP+ +A+ + L LF RG L P + Sbjct: 199 GKGSKRRSVPVGRQALQALHAWLALRGDWAGEGAAAEGAAGQALFISQRGARLTPQHIRL 258 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 +++ GL H LRHSFA+H+L + GDLR++Q +LGH ++TTQ+YT ++ ++ Sbjct: 259 RLKRRSLKAGLATPVHPHMLRHSFASHVLQSSGDLRAVQELLGHANITTTQVYTRLDFQH 318 Query: 306 GGDWMMEIYDQTHPSIT 322 + ++YD HP T Sbjct: 319 ----LAKVYDAAHPRAT 331 >gi|160915175|ref|ZP_02077388.1| hypothetical protein EUBDOL_01183 [Eubacterium dolichum DSM 3991] gi|158432974|gb|EDP11263.1| hypothetical protein EUBDOL_01183 [Eubacterium dolichum DSM 3991] Length = 302 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 81/292 (27%), Positives = 143/292 (48%), Gaps = 16/292 (5%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKI-TIQTIRQLSYTEIRAFISKRRTQK---IGDRS 87 S+ T +Y+ D ++F++++ E+ I + + + ++ AF+ + + + + + Sbjct: 19 SEHTKAAYQRDIQEFIMYI---REQAIDSFEDVDRIVVMNYIAFLRDKGGKGYSGMKNTT 75 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 + R LS ++SF YL + + + + K + +P L + +++ L++ Sbjct: 76 IARKLSSLRSFYHYLNEYIGIANNPFVYFKTPKIAKRIPEFLFYDEIEIFLESFDLNSMQ 135 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207 R+ + L+Y CGLR+SEA+SL +++ + L I GKGDK R+VP + Sbjct: 136 -----GLRDRTMFELMYACGLRVSEAVSLRTRDVDFADNILHIHGKGDKERLVPFYDLAK 190 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 + ++ Y + + LF RGK L Q + + L + H RH Sbjct: 191 ELLVSYIKDVRDVWATSDETALFVNQRGKKLTTRGVQYLMNKAVEKCDLHVHVHPHMFRH 250 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 SFATHLL NG DLR +Q +LGH LSTTQIY +V+ + + Y+ HP Sbjct: 251 SFATHLLDNGADLRYVQELLGHSSLSTTQIYVHVSKER----LKAAYEHAHP 298 >gi|227513451|ref|ZP_03943500.1| site-specific recombinase XerD [Lactobacillus buchneri ATCC 11577] gi|227524593|ref|ZP_03954642.1| site-specific recombinase XerD [Lactobacillus hilgardii ATCC 8290] gi|227083324|gb|EEI18636.1| site-specific recombinase XerD [Lactobacillus buchneri ATCC 11577] gi|227088268|gb|EEI23580.1| site-specific recombinase XerD [Lactobacillus hilgardii ATCC 8290] Length = 331 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 93/318 (29%), Positives = 157/318 (49%), Gaps = 23/318 (7%) Query: 15 LKERQN---WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71 + +R+N +L+ L ER S+ T+Q+Y+ D +FL FL +++ ++ I ++ Sbjct: 22 MDDRKNMDWFLKYLRSERHYSEDTVQAYQNDLTEFLKFLNETSKDHTSLIKIDSF---DV 78 Query: 72 RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRAL- 129 ++++ +K S+ + +S ++SF +L K ++ ++N +LK N LPR Sbjct: 79 ESYLTGLYDKKYARNSIAQKVSALRSFYGFLIKNEVI-KNNPFEYVHLKNQNRRLPRFFY 137 Query: 130 -NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 E QAL + + RNSAIL + Y G+R+SE +++ ++I + + Sbjct: 138 PTEMQAL------FSAAKKGERKLAFRNSAILEVFYSTGIRVSEGVTIQLKDIDLENQLI 191 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQR 245 + GKG K R VP ++A+ Y L LF GKPL + Sbjct: 192 LVTGKGRKQRYVPFGEPAKRAVESYLKESREPLMTKYHQKHDYLFVNHFGKPLTSRGIEY 251 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + + + L + H LRH+FAT +L+NG D+RS+Q +LGH LSTTQIYT+V + Sbjct: 252 ILNGIIKQSSLTTNIHPHMLRHTFATEMLNNGADMRSVQELLGHSSLSTTQIYTHVTKSH 311 Query: 306 GGDWMMEIYDQTHPSITQ 323 +M Y + P Q Sbjct: 312 ----LMNDYQKYFPRNNQ 325 >gi|312892234|ref|ZP_07751731.1| integrase family protein [Mucilaginibacter paludis DSM 18603] gi|311295364|gb|EFQ72536.1| integrase family protein [Mucilaginibacter paludis DSM 18603] Length = 322 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 83/317 (26%), Positives = 160/317 (50%), Gaps = 28/317 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE-----------KITIQTIRQLS 67 + ++Q L E+ S T+ +Y+ D QF + A + K+ + I ++ Sbjct: 16 ERFIQYLRYEKRFSSHTITAYQTDLYQFFTYTANSADHNLSPAEAELKVKLALSHIADIT 75 Query: 68 YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127 Y +IR +I + +S+ R +S +++F K+ + I T + ++ K LP Sbjct: 76 YQDIREWIVQLMNDDQAAKSINRKISCLRTFFKFALREGIITANPASKIQAPKIPKRLPV 135 Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 + E + ++L+ + + + + R+ ++ LL+G G+R++E + L +I + T Sbjct: 136 VVEEDKIVSLLSSSQIF---DDSFTGLRDKLVIELLFGTGIRLAELVGLKETDIDIYEGT 192 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 +++ GK +K R++P+ ++ ++ Y ++ + N L L +G + + + Sbjct: 193 IKVLGKRNKERVIPIHSELKLLLVHYINIKKSENFNNNSLTLIVTSKG----ANAYSKMV 248 Query: 248 RQL-RRYLGLPLST----TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + ++YL L +ST + H LRHSFAT LL++G DL +I+ +LGH LS TQIYT+ Sbjct: 249 YLIVQKYLSL-ISTQDKKSPHVLRHSFATSLLNHGADLNAIKELLGHANLSATQIYTH-- 305 Query: 303 SKNGGDWMMEIYDQTHP 319 N + + IY Q HP Sbjct: 306 --NSVERLKSIYKQAHP 320 >gi|261393207|emb|CAX50826.1| tyrosine recombinase XerC [Neisseria meningitidis 8013] Length = 305 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 86/308 (27%), Positives = 149/308 (48%), Gaps = 17/308 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI--TIQTIRQLSYTEIRAFISKR 78 +L+N+ + G S+ T+ +Y D + LA E Q + Q +T +S+R Sbjct: 13 YLENI-VREGKSEHTVAAYRRDLEELFALLAQMPSEAEGGVPQGLSQRDFTAALRRLSQR 71 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + R+L R LS + + +L +R + +++ K+ +P+AL ++ ++ Sbjct: 72 ---GLNARTLARKLSSWRQYCVWLVERGLMRADPTADIKPPKQPERVPKALPQEWLNRML 128 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + + R+ A+ L+YG GLR+SE L ++ D++ + + GKG K R Sbjct: 129 DLPVDGGDP----LAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQR 184 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VPL+ +A+ Y P + LF G G L+ Q+ + Q G Sbjct: 185 QVPLVGKSVEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGR 241 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + H +RHS+A HLL D+R++Q +LGH LSTTQIYT ++ D + +YD+ H Sbjct: 242 HVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAH 297 Query: 319 PSITQKDK 326 P ++D+ Sbjct: 298 PRAKRQDE 305 >gi|261250028|ref|ZP_05942605.1| tyrosine recombinase XerC [Vibrio orientalis CIP 102891] gi|260939532|gb|EEX95517.1| tyrosine recombinase XerC [Vibrio orientalis CIP 102891] Length = 310 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 82/300 (27%), Positives = 153/300 (51%), Gaps = 16/300 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L E+GLS T ++Y+ LA ++ ++ +Q+ +R SK + + Sbjct: 23 LRSEKGLSLHTQRNYKQQLETMAGHLA-----QLGLKEWQQVDAGWVRQLASKGMREGMK 77 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 SL LS ++SF ++ R + + + +K LP+ L+ + L++ Sbjct: 78 PSSLATRLSSLRSFFDFMMLRGEMSANPAKGVSAPRKKRPLPKNLDVDEIGQLLE----- 132 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 +E + R+ A++ L+YG GLR++E +S+ +++ +R+ GKGDK R VP Sbjct: 133 -VNEDDPLAIRDRAMMELMYGAGLRLAELVSINVKDVGLSSGEIRVVGKGDKERKVPFTG 191 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 + + ++ + P N + +L LF G ++ Q+ + + + + + H Sbjct: 192 MAAEWVSKWLRVRPSLANSD-ELGLFVSKLGVRISHRNVQKRMAEWGQKQAVASHISPHK 250 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ ++ + E+YDQ HP +K Sbjct: 251 LRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQH----LAEVYDQAHPRAKKK 306 >gi|300721450|ref|YP_003710725.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC 19061] gi|297627942|emb|CBJ88488.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC 19061] Length = 304 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 89/306 (29%), Positives = 153/306 (50%), Gaps = 16/306 (5%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 LL + +L+ L +ER LS LT+ Y R L LA + KI I + L +R Sbjct: 8 LLAPVEAFLRYLRVERRLSPLTITHY----RHHLTVLAEISL-KIGISEWQALDPVNVRL 62 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 F+S+ R + S+ LS ++SFL ++ + + + +K LP+ ++ + Sbjct: 63 FVSRSRRAGLESASIALRLSALRSFLDWMVMQGKLAANPAKMVSAPRKKRHLPKNMDVDE 122 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L+ N+ L+ + R+ +L ++YG GLR+SE + L +++ D + ++GK Sbjct: 123 VNQLL-NINLNDP-----LSVRDRTMLEVMYGAGLRLSELVGLNWRDVDLDSGDVWVRGK 176 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 G K R VP ++ + + ++ N + GK ++ Q+ Q Sbjct: 177 GSKERKVPFGRMAQEWLQRWLEMRELFEPENDAV-FISSKSGKRISARNVQKRFEQWGIR 235 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ H LRHSFATH+L + GDLR++Q +LGH LSTTQIYT+++ ++ + ++ Sbjct: 236 QGVNSHINPHKLRHSFATHILESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LTKV 291 Query: 314 YDQTHP 319 YD HP Sbjct: 292 YDVAHP 297 >gi|13473085|ref|NP_104652.1| site-specific tyrosine recombinase XerD [Mesorhizobium loti MAFF303099] gi|34222995|sp|Q98FX8|XERD_RHILO RecName: Full=Tyrosine recombinase xerD gi|14023833|dbj|BAB50438.1| site-specific recombinase [Mesorhizobium loti MAFF303099] Length = 305 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 85/297 (28%), Positives = 136/297 (45%), Gaps = 30/297 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ + ERG ++ TL SY D + + +IRA++ Sbjct: 8 EAFLEMMSAERGAAENTLSSYRRDLED---------ASSGIDGGLAGAAAADIRAYLDDI 58 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S R LS I+ F K+L + T+ + + KK+ LP+ ++E + L+ Sbjct: 59 AERGFAPTSQARKLSAIRQFFKFLYAEGLRTDDPTGTLDSPKKARPLPKTMSEAETGRLI 118 Query: 139 DNVLLHTS-----HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 D + + + R A++ +LY GLR+SE + L D ++GK Sbjct: 119 DRAAVEAGDAGLGYSDRLAALRLHALVEVLYATGLRVSELVGLPVTVAQRDDRFFMVRGK 178 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR--------GIRGKPLNPGVFQR 245 GDK R+VPL R A+ + L +P F L+ VF R Sbjct: 179 GDKERMVPLSAKARVAMRAW-------LAARAGVPAFADSPFLFPAASDSGYLSRQVFAR 231 Query: 246 YIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 ++ L G+ + + H LRH+FA+HLL NG DLR++Q +LGH +STTQIYT+V Sbjct: 232 DLKGLAARAGIASAKISPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTHV 288 >gi|257453533|ref|ZP_05618823.1| tyrosine recombinase XerD [Enhydrobacter aerosaccus SK60] gi|257448991|gb|EEV23944.1| tyrosine recombinase XerD [Enhydrobacter aerosaccus SK60] Length = 314 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 90/322 (27%), Positives = 154/322 (47%), Gaps = 27/322 (8%) Query: 7 PEIVSFELLKERQNWLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 P V L + +++Q E RGL+ T +Y R ++ E + I Sbjct: 9 PRQVKALHLHDEPSYIQQFRQELLTRGLATNTRNAY---IRDLMLC------ETTCSKAI 59 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 + +++ A ++ Q RS R+LS +K F + ++ +++ K Sbjct: 60 TRWDASDVLACLAALYKQGKTARSQARALSSLKQFFLWQINANQRDDNPCEHIKTPKLGR 119 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 +LP+ L+E + LL + + + R+ A+ +LY CGLR+SE + L+ + Sbjct: 120 ALPKDLSESDV-----DALLASPDTSTPLGMRDQAMFEVLYACGLRVSELIHLSLSEVNL 174 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL------NIQLPLFRGIRGKP 237 + L++ GKGDK R+VPL + +Y L L + + +F +G Sbjct: 175 NAGWLQVTGKGDKTRLVPLGEVAIDVLTDYLTLARPQLCIMKNGRESRCQAVFLTQQGGY 234 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + F I++ + G+ + HTLRH+FATHLL++G DLRS+Q +LGH LSTTQI Sbjct: 235 MTRQNFWYVIKRYAKQAGIESEISPHTLRHAFATHLLNHGADLRSVQMLLGHSDLSTTQI 294 Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319 YT+V + + +++ Q HP Sbjct: 295 YTHVATAR----LQQLHQQHHP 312 >gi|72161605|ref|YP_289262.1| site-specific tyrosine recombinase XerD [Thermobifida fusca YX] gi|71915337|gb|AAZ55239.1| tyrosine recombinase XerD [Thermobifida fusca YX] Length = 321 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 97/330 (29%), Positives = 150/330 (45%), Gaps = 31/330 (9%) Query: 6 LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65 +PE S L + +L +L +ERGL+ TLQSY D ++L FL T IT +R Sbjct: 1 MPEQAS-RLHTAVRGYLDHLTVERGLAANTLQSYRRDLNRYLDFL---TARGIT--DLRD 54 Query: 66 LSYTEIRAFISKRRT-----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 + ++ +F+ R + +G S R++ ++ ++ + +T +R Sbjct: 55 VRADDVASFLRTLREGDAHHRPLGANSAGRAVIAVRGLHRFALREGLTAHDPAHEVRPPA 114 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 LP+A+ Q V+ +L R+ A++ LLYG G RISE + L + Sbjct: 115 LQRRLPKAITVAQ----VEALLAAADIGGGPRALRDRALIELLYGTGARISEVVGLDVDD 170 Query: 181 IM---------DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPL 229 + + + +R +GKG K RIVP+ R A+ Y L + L Sbjct: 171 VTRLRPDPHADTEVAAVRFRGKGGKERIVPVGRYARTAVDAYLVRARPGLAAAGRGSSAL 230 Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289 F RG L + GL + HTLRHSFATHL+ G D+R +Q +LGH Sbjct: 231 FLNARGGRLTRQGAWAVLHAAAERAGL-RDVSPHTLRHSFATHLIDGGADVRVVQELLGH 289 Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 ++TTQ+YT V D + E+Y HP Sbjct: 290 ASVTTTQVYTLVTV----DRLREVYAAAHP 315 >gi|326333662|ref|ZP_08199899.1| putative tyrosine recombinase XerC [Nocardioidaceae bacterium Broad-1] gi|325948568|gb|EGD40671.1| putative tyrosine recombinase XerC [Nocardioidaceae bacterium Broad-1] Length = 320 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 93/308 (30%), Positives = 149/308 (48%), Gaps = 25/308 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIF---LAFYTEEKITIQTIRQLSYTEIRAFIS 76 ++ ++L ERGLS T+++Y D R L + E I ++T+R ++++ Sbjct: 28 DYERHLSAERGLSDHTVRAYLGDVRSLLDHAGRMGRTDPEGIDLRTLR--------SWLA 79 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 K++T +L R + + F +L + + + K +LP L + + Sbjct: 80 KQQTTGHSRTTLARRATAARVFCGWLVRTGRAQVDAGAALGSPKAHRTLPPVLRPDEVES 139 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L+ + T + R+ A+L +LY G R+ E + L ++ ++ +R+ GKG K Sbjct: 140 LIAAAIAAAEDGTA-VGMRDIAVLEMLYATGSRVGELVGLDLDDVDYERRVVRVLGKGRK 198 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQL--RRY 253 R+VP +A+ + L P LF G RG L+ QR +R L RR Sbjct: 199 ERMVPFGGPAARALDRWIVRGRPQLVTESSGPALFLGARGGRLD----QRAVRTLVHRRL 254 Query: 254 LGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 +P + H LRHS ATHLL G DLRS+Q +LGH L+TTQIYT+V+S D + Sbjct: 255 ADVPGAPDLGPHGLRHSTATHLLEGGADLRSVQELLGHASLATTQIYTHVSS----DRLR 310 Query: 312 EIYDQTHP 319 + Y Q HP Sbjct: 311 KAYRQAHP 318 >gi|296105305|ref|YP_003615451.1| site-specific tyrosine recombinase XerC [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059764|gb|ADF64502.1| site-specific tyrosine recombinase XerC [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 300 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 88/298 (29%), Positives = 147/298 (49%), Gaps = 17/298 (5%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L+ L +ER LS +TL +Y+ RQ + E I +++ +Q +R F+ + R + Sbjct: 14 LRYLGVERQLSPITLLNYQ---RQLDAIMQIADE--IGLKSWQQCDAATVRGFVVRSRKK 68 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 + SL LS ++SF +L + + + K LP+ ++ L+D Sbjct: 69 NLSPASLALRLSALRSFFDWLVSQGGLKANPAKGIATPKAPRHLPKNIDVDDVNRLLDID 128 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 L + R+ A+L ++YG GLR+SE ++L +++ + + + GKG K R +P Sbjct: 129 L------NDPLAVRDRAMLEVMYGAGLRLSELVNLDLKHLDLESGEVWVMGKGSKERRLP 182 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 + + I + DL L + LF GK ++ Q+ + GL Sbjct: 183 IGRNAVSWIEHWLDLR--GLFGAEEDALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVH 240 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ + +YD HP Sbjct: 241 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHP 294 >gi|315604216|ref|ZP_07879282.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 180 str. F0310] gi|315313922|gb|EFU61973.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 180 str. F0310] Length = 316 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 91/320 (28%), Positives = 156/320 (48%), Gaps = 28/320 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++W+ L +E+G S T+ +Y D +++ + E T+ +S ++ ++ Sbjct: 9 RDWVDYLRVEKGASTHTVSNYLRDASRYVRDM-----ESRGRATLTDVSAHDVEEHLAGL 63 Query: 79 RTQKIGDR-----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 + ++ R S+ R+ + I+ +Y + +R ++ + LP+AL+ Sbjct: 64 ASGQVSGRPAAPSSVARACAAIRGLHRYALAEGVLNVDVTAQLRAPRQGSHLPKALS--- 120 Query: 134 ALTLVDNV--LLHTSH-ETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQ-STL 188 VD V LL +H + I R++A+L LLY G R+SEA++L+ ++ +D Q + Sbjct: 121 ----VDEVGRLLDAAHADDTPIGLRDAALLELLYATGARVSEAVALSADDLDLDGQVPVV 176 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRY 246 R+ GKG K RIVP+ +A+ Y L + LF RG L+ Sbjct: 177 RLFGKGRKERIVPVGSFAIEALDAYRVRARPVLAARGSGSTALFLNSRGSALSRQSAWTA 236 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 IR+ + L + HTLRHSFATHLL G +R +Q +LGH ++TTQIYT V + Sbjct: 237 IRRAAQAANLAHRVSPHTLRHSFATHLLEGGASVREVQELLGHASVATTQIYTRVTAT-- 294 Query: 307 GDWMMEIYDQTHPSITQKDK 326 + E++ +HP D+ Sbjct: 295 --VLREVFTVSHPRARGTDE 312 >gi|291279466|ref|YP_003496301.1| site-specific DNA tyrosine recombinase XerD [Deferribacter desulfuricans SSM1] gi|290754168|dbj|BAI80545.1| site-specific DNA tyrosine recombinase XerD [Deferribacter desulfuricans SSM1] Length = 293 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 88/285 (30%), Positives = 145/285 (50%), Gaps = 14/285 (4%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 N+ L +E LS+ T+++Y D + FL F+ + + T+ +SY I+ I K Sbjct: 6 NFKHYLLVEEYLSENTIKAYLSDVKAFLDFVKIKKYDIKSEDTV--ISY--IKNLIKKSY 61 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + + S+ R +S I + YL K K+ ++ +L + KK LP LNE + L ++D Sbjct: 62 SIE----SILRKISSISVYYDYLIKEKVIDKNPVLLIDKPKKWFKLPDFLNEDEILKILD 117 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 V T H R+ I+ +LY G+RISE +++ N + +RI+GKG K R Sbjct: 118 TVDKSTPH-----GFRDYIIINMLYTSGMRISELVNIEVSNCDFRRGIIRIKGKGGKERF 172 Query: 200 VPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VP+ + + + +Y ++ + + LF G L+ + +R+ G+ Sbjct: 173 VPIHKKLIEELNKYLEIRHNYFVKGRDNGYLFLNKFGNKLSREYCWKIVRKYAEMAGIKK 232 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + H RH+FATHLL NG DLR IQ +LGH + TT+IYT ++ Sbjct: 233 KVSPHVFRHTFATHLLKNGADLRVIQMLLGHSSILTTEIYTQLDD 277 >gi|269214488|ref|ZP_05986672.2| tyrosine recombinase XerC [Neisseria lactamica ATCC 23970] gi|269209617|gb|EEZ76072.1| tyrosine recombinase XerC [Neisseria lactamica ATCC 23970] Length = 334 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 85/306 (27%), Positives = 145/306 (47%), Gaps = 13/306 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+N+ + G S+ T+ +Y D + LA E + LS + A + + Sbjct: 42 YLENI-VREGKSEHTVAAYRRDLEELFALLAQMPSE-AEGGVPQDLSRRDFTAALRRLSQ 99 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + R+L R LS + + +L KR + + K+ +P+AL ++ ++D Sbjct: 100 RGLNARTLARKLSSWRQYCAWLVKRGLMCADPTAGISPPKQPQRIPKALPQEWLNRMLDL 159 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + + R+ A+ L+YG GLR+SE L ++ D++ + + GKG K R V Sbjct: 160 PV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQV 215 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 PL +A+ Y P + LF G G L+ Q+ + Q G Sbjct: 216 PLTGKSAEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAINGDGRHV 272 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 + H +RHS+A HLL D+R++Q +LGH LSTTQIYT ++ D + +YD+ HP Sbjct: 273 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAHPR 328 Query: 321 ITQKDK 326 +++K Sbjct: 329 AKRQEK 334 >gi|157964440|ref|YP_001499264.1| site-specific tyrosine recombinase XerD [Rickettsia massiliae MTU5] gi|157844216|gb|ABV84717.1| Tyrosine recombinase XerD [Rickettsia massiliae MTU5] Length = 306 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 96/300 (32%), Positives = 152/300 (50%), Gaps = 28/300 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ L ER LSK ++ SY+ D F +LA ++ I T IR +I + Sbjct: 7 FLEMLLAERALSKNSILSYKRDLFDFHNYLATQKLSELNITT------ENIRDWIEYLAS 60 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS+ R +S IKS+ K+L T + +LN+ K N LP L+ Q + + Sbjct: 61 NDLQARSINRKISTIKSYYKFLISENHTAFNPVLNVDLPKYQNKLPEILSIDQ----IKS 116 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-------LRIQGK 193 +L H S + R +A+++LLY G R+SE +SL +I+ ++++ + GK Sbjct: 117 LLEHCSQDNSPEGIRLNAMIHLLYASGFRVSELVSLKLADILTNKTSKGEVRKIFSVLGK 176 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LF--RGIRGKPLNPGVFQRY 246 G+K R++ + +I +Y L D+ +N P LF + G + F Sbjct: 177 GNKERVIVINEQAVISIAKY--LAIRDVFVNKAKPRNLIYLFPSSALAGY-MTRQNFAIL 233 Query: 247 IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 ++ Y GL P + H LRHSFA+HLL G DLR IQ +LGH +STTQIYT++ + + Sbjct: 234 LKSAALYAGLNPEHISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQTNH 293 >gi|170693510|ref|ZP_02884669.1| tyrosine recombinase XerD [Burkholderia graminis C4D1M] gi|170141665|gb|EDT09834.1| tyrosine recombinase XerD [Burkholderia graminis C4D1M] Length = 322 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 86/278 (30%), Positives = 133/278 (47%), Gaps = 13/278 (4%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E GLS+ TL +Y D R F +LA + I S ++ A+ + RR K Sbjct: 41 LWLEHGLSRNTLDAYRRDLRLFSEWLAQTRGASLDIA-----SEADLNAYSAARRKDK-- 93 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S R LS + + + + L +R+ K+ P L+E Q L+ + Sbjct: 94 STSANRRLSVFRRYYGWAVREHRAKVDPTLRIRSAKQPPRFPSTLSEAQVEALLGAPDID 153 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 T + R+ +L L+Y GLR++E ++L + ++ +R+ GKG K R++P Sbjct: 154 TP-----LGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVMGKGSKERLIPFGE 208 Query: 205 SVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 I Y D P L LF R + + F I++ G+ + H Sbjct: 209 EAHGWIERYLRDARPALLGARAADALFVTNRAEGMTRQQFWNIIKRHAAAAGVHAPLSPH 268 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 TLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V Sbjct: 269 TLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHV 306 >gi|254804308|ref|YP_003082529.1| site-specific recombinase [Neisseria meningitidis alpha14] gi|254667850|emb|CBA03883.1| site-specific recombinase [Neisseria meningitidis alpha14] Length = 305 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 84/306 (27%), Positives = 148/306 (48%), Gaps = 13/306 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+N+ + G S+ T+ +Y D + LA E + LS + A + + Sbjct: 13 YLENI-VREGKSEHTVAAYRRDLEELFALLAQMPSEDAG-GVPQDLSRRDFTAALRRLSQ 70 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + R+L R LS + + +L +R + +++ K+ +P+AL ++ ++D Sbjct: 71 RGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQEWLNRMLDL 130 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + + R+ A+ L+YG GLR+SE L ++ D++ + + GKG K R V Sbjct: 131 PV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQV 186 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 PL+ +A+ Y P + LF G G L+ Q+ + Q G Sbjct: 187 PLVGKSVEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHV 243 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 + H +RHS+A HLL D+R++Q +LGH LSTTQIYT ++ D + +YD+ HP Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAHPR 299 Query: 321 ITQKDK 326 ++D+ Sbjct: 300 AKRQDE 305 >gi|325141563|gb|EGC64029.1| tyrosine recombinase XerC [Neisseria meningitidis 961-5945] gi|325197634|gb|ADY93090.1| tyrosine recombinase XerC [Neisseria meningitidis G2136] Length = 305 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 84/306 (27%), Positives = 148/306 (48%), Gaps = 13/306 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+N+ + G S+ T+ +Y D + LA E + LS + A + + Sbjct: 13 YLENI-VREGKSEHTVAAYRRDLEELFALLAQMPSEDAG-GVPQDLSRRDFTAALRRLSQ 70 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + R+L R LS + + +L +R + +++ K+ +P+AL+++ ++D Sbjct: 71 RGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALSQEWLNRMLDL 130 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + + R+ A+ L+YG GLR+SE L ++ D++ + + GKG K R V Sbjct: 131 PV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQV 186 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 PL +A+ Y P + LF G G L+ Q+ + Q G Sbjct: 187 PLTGKSVEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHV 243 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 + H +RHS+A HLL D+R++Q +LGH LSTTQIYT ++ D + +YD+ HP Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAHPR 299 Query: 321 ITQKDK 326 ++D+ Sbjct: 300 AKRQDE 305 >gi|227824418|ref|ZP_03989250.1| recombinase [Acidaminococcus sp. D21] gi|226904917|gb|EEH90835.1| recombinase [Acidaminococcus sp. D21] Length = 298 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 86/301 (28%), Positives = 148/301 (49%), Gaps = 20/301 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 ++ L +E GL++ T +SY D R F +++ + I+++S +I ++S + Sbjct: 14 FMDYLTVEMGLARNTRESYGRDLRLFAVWVK---------KPIKEISRDDILTYMSVLKA 64 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q S R L+ +K+F +++ + + + LP+ L+ + L + Sbjct: 65 QNYAVTSSARKLAALKAFFRFMTAEGTIEVDPCEVVESETRGMVLPKVLSVDEVNRLFEA 124 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 L T R+ +L ++Y G+R+SE L+L ++ + GKG K R++ Sbjct: 125 PDLDTPE-----GYRDRTMLEVMYATGMRVSELLALKVGSVNLASHYVIAYGKGAKERLI 179 Query: 201 PLLPSVRKAILEYYD-LCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 PL + + EY + P + N LF IRG + F + I+ + + Sbjct: 180 PLGHYAIEYLKEYLSRVRPHFVKENRPCDDLFLTIRGTGMTRQRFWQLIKNYGLKVHIAK 239 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 S T H LRHSFATH+L NG DLR++Q +LGH +STTQIYT++ + + IYD++H Sbjct: 240 SLTPHILRHSFATHMLDNGADLRTVQELLGHSDISTTQIYTHLTNHR----LKAIYDKSH 295 Query: 319 P 319 P Sbjct: 296 P 296 >gi|126729514|ref|ZP_01745327.1| tyrosine recombinase XerD [Sagittula stellata E-37] gi|126709633|gb|EBA08686.1| tyrosine recombinase XerD [Sagittula stellata E-37] Length = 311 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 84/278 (30%), Positives = 137/278 (49%), Gaps = 21/278 (7%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 TL +Y+ D +L T+ + T ++ ++ +++ T + + R LS Sbjct: 26 TLAAYQRDLTHVADWL---TDHALDFATAQK---KDVESYLIDCDTLGLSRATRARRLSA 79 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 IK ++ + + ++ + + + LP+ L+ +Q L+D H E A Sbjct: 80 IKQIYRFAFEEGLREDNPAVQIAGPGREKRLPKTLSVEQVDRLLDAAANHGRTEAD--RA 137 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 RN+ ++ +LY G+R++E +SL D L I+GKG K R+VPL P R+A+ + Sbjct: 138 RNACLMQVLYATGMRVTELVSLPVSAARGDPRMLLIRGKGGKERMVPLSPPAREALTAW- 196 Query: 215 DLCPFDLNL--------NIQLPLFRGIRGKP--LNPGVFQRYIRQLRRYLGLPLS-TTAH 263 L D + P GK L F I++ G+P S T H Sbjct: 197 -LSARDAAASEAQAATGAVPSPFLFPSHGKAGHLTRHAFYMLIKEFALEAGVPPSEVTPH 255 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 TLRH+FATHLL+NG DLR+IQ++LGH ++TT+IYT+V Sbjct: 256 TLRHAFATHLLANGADLRAIQTLLGHADVATTEIYTHV 293 >gi|313633457|gb|EFS00282.1| tyrosine recombinase XerC [Listeria seeligeri FSL N1-067] Length = 300 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 88/309 (28%), Positives = 153/309 (49%), Gaps = 21/309 (6%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 K Q +L L ER S+ T +YE D F FL E+ IT Q+++ ++R ++ Sbjct: 6 KWEQLFLDYLHSERNYSENTSTAYENDLIDFRRFL---NEQAIT--EYSQVTFLDVRIYL 60 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 ++ + + ++ R +S ++SF +L + + TE+ + + K LP+ ++ Sbjct: 61 TELKQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEME 120 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L +++ +ET + R+ +L +LYG G+R+SE + +I ++ I+GKG+ Sbjct: 121 ALFQ--VVYEDNET--LTLRDRVLLEVLYGTGIRVSECAGILLTDIDKTYQSILIRGKGN 176 Query: 196 KIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 K R VP AI +Y D + F+ L G+PL + + ++ Sbjct: 177 KERYVPFGAYAEDAITDYLDSRIELMKHFN---KTHDSLLINHYGEPLTTRGIRYCLTKI 233 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 L H LRH+FAT LL+NG D+R++Q +LGH LS+TQIYT+V ++ + Sbjct: 234 ISKASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH----L 289 Query: 311 MEIYDQTHP 319 Y + HP Sbjct: 290 KSTYMKHHP 298 >gi|182680307|ref|YP_001834453.1| integrase family protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182636190|gb|ACB96964.1| integrase family protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 325 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 94/319 (29%), Positives = 151/319 (47%), Gaps = 28/319 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + ERG ++ TL++Y D + LA +++ + +IR ++ Sbjct: 11 EAFLDMIGAERGAARNTLEAYGRDLTDYAQALADRG------RSLLDATSEDIRHYLGDL 64 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA---L 135 TQ + S R LS I+ F ++L ++ L + ++S LP+ L + L Sbjct: 65 ETQGLKPSSSARRLSAIRQFHRFLASESHRSDDPALILEGPRRSRGLPKTLTMAEVERLL 124 Query: 136 TLVDNVLLHTSHE--TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 T+ L + + AR + +L LLY GLR+SE +SL + + I+GK Sbjct: 125 TVSKEGLEDPARPLGERVRAARTACLLELLYATGLRVSELVSLPDSAMRGADPLITIRGK 184 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-------LNPGVFQRY 246 G + R+VPL P R+AI Y DL L L +G P L+ F R Sbjct: 185 GGRERLVPLPPVARRAITFYRDLLH-----QKHLGLSKGGWLFPADSETGYLSRQAFARD 239 Query: 247 IRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 ++ + G+ + + H LRH+FA+HLL NG DLR +Q +LGH ++TTQIYT+V + Sbjct: 240 LKVVAAAAGIDTARISPHVLRHAFASHLLQNGADLRIVQELLGHADIATTQIYTHVLDER 299 Query: 306 GGDWMMEIYDQTHPSITQK 324 M + HP +K Sbjct: 300 ----MKAMVRDLHPLAEEK 314 >gi|300933911|ref|ZP_07149167.1| integrase/recombinase [Corynebacterium resistens DSM 45100] Length = 325 Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 88/305 (28%), Positives = 145/305 (47%), Gaps = 19/305 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + ++L+ G S+ T+ +Y D + L L E T++ R + + A S+ Sbjct: 13 EEYEEHLQFVVGRSENTITAYRKDLKAALEGLDSVDE--FTLEHARDVLGWALDAGHSRS 70 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S+ R +S +K F +L + + + +R K SLPR L +QA ++ Sbjct: 71 --------SMARMVSSLKGFGSFLAHKGWVEANPVAALRAPKLDRSLPRVLRTEQATAVL 122 Query: 139 DNVLLHTS-HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 D H + + R+ A+ LL+ G+R++E ++ + +R+ GKG+K Sbjct: 123 DRARDHARINNEDPLATRDWAMAELLFATGMRVAELTGTDIDDVDFTHNVVRVVGKGNKQ 182 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLN-LNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 R+VP P+ R A+ + LN N Q LF G RG +N + I +L Sbjct: 183 RVVPFGPTARTAVEAWISRRKEVLNPANGQGVAALFLGARGGRINQRQVRSVINELTDAA 242 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G P + H RHS AT +L G DLR +Q +LGH + TTQIYT+V G + + ++ Sbjct: 243 GAP-RMSPHGFRHSAATAILEGGADLRVVQEMLGHASMQTTQIYTHV----GTERLKAVF 297 Query: 315 DQTHP 319 +Q HP Sbjct: 298 NQAHP 302 >gi|116254087|ref|YP_769925.1| site-specific tyrosine recombinase XerD [Rhizobium leguminosarum bv. viciae 3841] gi|115258735|emb|CAK09841.1| putative tyrosine recombinase [Rhizobium leguminosarum bv. viciae 3841] Length = 317 Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 97/320 (30%), Positives = 156/320 (48%), Gaps = 23/320 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L+ + ERG + TLQSYE D FL TE I + + + T++ A++S Sbjct: 10 ESFLEMMSAERGAAANTLQSYERDLDDVRSFL---TERSIRLT---EAASTDLAAYLSSL 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S R L+ ++ F K+L + + + KK LP+ + ++ L+ Sbjct: 64 ARKGFKPSSQARRLAAMRQFYKFLYAEGLRADDPTGILDAPKKGRPLPKTMGVEEVGRLL 123 Query: 139 DNVLLHTSHETKWIDARNSAILYLL--YGCGLRISEALSLTPQNIMDDQST-LRIQGKGD 195 R + L Y G+R+SE +SL P ++D + L I+GKG+ Sbjct: 124 SRAEAEAEDPAPGQLQRLRMLALLELLYATGMRVSELVSL-PARVLDQEGRFLMIRGKGN 182 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNP-GVFQRYIRQ 249 K R+VPL S A+ Y L + N ++ P LF + P VF R ++ Sbjct: 183 KERLVPLSQSAISALKSYGRLLAVE-NAAVKEPQESPWLFPSASKEGYLPRQVFARDLKN 241 Query: 250 LRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 L GL P + H +RH+FA+HLL+NG DLR +Q +LGH +STTQIYT+V + Sbjct: 242 LAIRAGLTPSLISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER--- 298 Query: 309 WMMEIYDQTHPSITQKDKKN 328 ++ QTH + ++ KK+ Sbjct: 299 --LQQLVQTHHPLAKQAKKH 316 >gi|160892553|ref|ZP_02073343.1| hypothetical protein CLOL250_00082 [Clostridium sp. L2-50] gi|156865594|gb|EDO59025.1| hypothetical protein CLOL250_00082 [Clostridium sp. L2-50] Length = 292 Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 89/300 (29%), Positives = 149/300 (49%), Gaps = 19/300 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L+N+ + S+ T+ SY R + F FY E + IR ++ T I +I Sbjct: 10 DYLKNI---KKSSENTVASYR---RDLVKFSDFYREN--GTEDIRSINETNINTYILYLE 61 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 ++ RS++ IKSF +L + KI + +N++ K +P L ++ Sbjct: 62 KNGKSMATVSRSIASIKSFFGFLFREKILMDDPSVNIKPPKIEKKMPDILTIEEV----- 116 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 N LL + + R+ A+L LLY G+R+SE ++L ++ + K RI Sbjct: 117 NRLLDQPGDQSPKEIRDRAMLELLYATGIRVSELVTLKITDVNLKMGYIECHDLR-KSRI 175 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 +P+ S ++A+ Y D+ N + LF +G P+ F + I+ G+ Sbjct: 176 IPIEDSAQRALDNYISNVRGDMCKNSEY-LFSNCKGTPMTRQGFWKIIKVYADKAGIDKD 234 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T H +RHSFA+HL++NG DL+++Q +LGH +STTQIY +NSK + E Y + HP Sbjct: 235 ITPHMIRHSFASHLVNNGADLKAVQEMLGHADISTTQIY--LNSKQS--RLKEEYQKAHP 290 >gi|329724319|gb|EGG60831.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU144] Length = 296 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 93/312 (29%), Positives = 168/312 (53%), Gaps = 32/312 (10%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 K ++ +L L++ER S+ TL+SY D QF FL E + ++T Y + R ++ Sbjct: 3 KIQETFLYMLKVERNFSEYTLKSYHDDLVQFNNFLE---REHLQLET---FEYKDARNYL 56 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSLPRALNE 131 + + ++ ++ R +S +++F ++ +T +++I+N + + KK LP+ E Sbjct: 57 AFLYSNQLKRTTVSRKISTLRTFYEFW----MTQDNSIINPFVQLVHPKKEKYLPQFFYE 112 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 ++ L V H+ K R+ I+ LLY G+R+SE +++ ++I + +++ Sbjct: 113 EEMEALFQTV----EHDNKK-GIRDKVIIELLYATGIRVSELINIKLKDIDMNLPGVKVL 167 Query: 192 GKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQ 249 GKG+K R +P R++I Y + P L + L + ++G P+ GV RY+ Sbjct: 168 GKGNKERFIPFGEFCRQSIERYLEEFQPKQLANHDYLIV--NMKGDPITERGV--RYVLN 223 Query: 250 --LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 ++R G+ H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++ Sbjct: 224 DVVKRTAGVN-DIHPHKLRHTFATHLLNQGADLRTVQSLLGHANLSTTGRYTHVSNQQ-- 280 Query: 308 DWMMEIYDQTHP 319 + ++Y HP Sbjct: 281 --LRKVYLNAHP 290 >gi|319401458|gb|EFV89668.1| tyrosine recombinase XerC [Staphylococcus epidermidis FRI909] Length = 296 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 93/312 (29%), Positives = 167/312 (53%), Gaps = 32/312 (10%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 K ++ +L L++ER S TL+SY D QF FL E + ++T Y + R ++ Sbjct: 3 KIQETFLYMLKVERNFSAYTLKSYHDDLVQFNNFLE---REHLQLET---FEYKDARNYL 56 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSLPRALNE 131 + + ++ ++ R +S +++F ++ +T +++I+N + + KK LP+ E Sbjct: 57 AFLYSNQLKRTTVSRKISTLRTFYEFW----MTQDNSIINPFVQLVHPKKEKYLPQFFYE 112 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 ++ L V H+ K R+ I+ LLY G+R+SE +++ ++I + +++ Sbjct: 113 EEMEALFQTV----EHDNKK-GIRDKVIIELLYATGIRVSELINIKLKDIDMNLPGVKVL 167 Query: 192 GKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQ 249 GKG+K R +P R++I Y + P L + L + ++G P+ GV RY+ Sbjct: 168 GKGNKERFIPFGEFCRQSIERYLEEFQPKQLANHDYLIV--NMKGDPITERGV--RYVLN 223 Query: 250 --LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 ++R G+ H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++ Sbjct: 224 DVVKRTAGVN-DIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQ-- 280 Query: 308 DWMMEIYDQTHP 319 + ++Y HP Sbjct: 281 --LRKVYLNAHP 290 >gi|332886009|gb|EGK06253.1| tyrosine recombinase XerD [Dysgonomonas mossii DSM 22836] Length = 299 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 87/291 (29%), Positives = 152/291 (52%), Gaps = 17/291 (5%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 ++++ +N+L +E+ LS ++ +Y D + FL E + ++ + + ++ Sbjct: 7 IVRKYRNYLL---LEKSLSPNSIDAYMTDLAKLSGFLQ---NENLKVEDV---TLDNLQQ 57 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 F+++ I RS+ R +SGIKSF +L + + K LP L + Sbjct: 58 FVAQLYDIGINARSVARIISGIKSFYDFLVLDGYMQNDPTELLDSPKIGLKLPTVLALDE 117 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L+ + L T RN AIL LY CGLRISE +L ++ D+ +++QGK Sbjct: 118 IEKLMSVIDLSTKE-----GQRNRAILETLYSCGLRISELTTLKFSDLFFDEGFIKVQGK 172 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 G K R+VP+ + K I E Y + ++N+ + LF RG ++ + +I++ Sbjct: 173 GSKQRLVPISHTAIKEI-EKYLIYRKEINVKKGSEDALFLSNRGTAISRIMVFHFIKEYA 231 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 G+ + + HT RHSFATHLL G ++R+IQ +LGH +++TT+IYT+++ Sbjct: 232 IQAGIKKTISPHTFRHSFATHLLEGGANIRAIQLMLGHEKITTTEIYTHMD 282 >gi|75674591|ref|YP_317012.1| tyrosine recombinase XerD [Nitrobacter winogradskyi Nb-255] gi|74419461|gb|ABA03660.1| tyrosine recombinase XerD subunit [Nitrobacter winogradskyi Nb-255] Length = 319 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 96/305 (31%), Positives = 145/305 (47%), Gaps = 42/305 (13%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLA-----FYTEEKITIQTIRQ-LSYTEIRAF 74 +L L E+G + TL +Y D FLA F E QT+R L+ ++R F Sbjct: 15 FLDMLAAEQGAGENTLDAYRRDLEDLSAFLARARRNFVIAE---TQTLRDYLNDLDLRGF 71 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 S S+ R LS ++ ++L ++ ++ + K+ SLP+ L+ Sbjct: 72 KSS---------SVARRLSAMRHLFRFLLSERVRSDDPAAILSGPKRGRSLPKVLS---- 118 Query: 135 LTLVDNVLLHTSHETKWIDA---------RNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 + VD +L + + +DA R +L +LY GLR+SE +SL D Sbjct: 119 IADVDRLLGRAKADAESLDAPPARRLRAARLYCLLEVLYATGLRVSELVSLPLSAARRDA 178 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--------LPLFRGIRGKP 237 + ++GKGDK R+VPL + R+A+ +Y P F G G Sbjct: 179 RMIVVRGKGDKERLVPLNNASRQAMADYLQTMADQRGAGKAASPRQSWLFPSF-GESGH- 236 Query: 238 LNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 L F R +++L GL P + H LRH+FA+HLL NG DLR +Q++LGH +STTQ Sbjct: 237 LTRQHFARELKELAAAAGLAPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQ 296 Query: 297 IYTNV 301 IYT+V Sbjct: 297 IYTHV 301 >gi|254251586|ref|ZP_04944904.1| Site-specific recombinase XerD [Burkholderia dolosa AUO158] gi|124894195|gb|EAY68075.1| Site-specific recombinase XerD [Burkholderia dolosa AUO158] Length = 316 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 92/323 (28%), Positives = 148/323 (45%), Gaps = 22/323 (6%) Query: 2 EGNNLPEIVSFELLKERQN---WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI 58 E + S LL R + + L +E GL++ TL +Y D F +LA + + Sbjct: 9 EADGAEGAASPALLASRASIDVFCDALWLEHGLARNTLDAYRRDLMLFSQWLAATHDAPL 68 Query: 59 TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118 + +I+ R K S R LS + + + + + L + + Sbjct: 69 DAA-----DEAMVTGYIAARSDGKA--TSSNRRLSVFRRYYGWAVREHRASADPTLRITS 121 Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178 K++ P L+E Q L+ + T + R+ +L L+Y GLR+SE ++L Sbjct: 122 AKQAARFPSTLSEAQVEALLGAPDIDTP-----LGLRDRTMLELMYASGLRVSELVTLKT 176 Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGK 236 + ++ +R+ GKG K R+VP V +E Y D P L LF RG Sbjct: 177 VEVGLNEGVVRVMGKGSKERLVPF-GEVAHGWIERYLRDARPALLGARAADALFVTARGD 235 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + F I++ R+ + + HTLRH+FATHLL++G DLR +Q +LGH +STTQ Sbjct: 236 GMTRQQFWNIIKRHARHADVRAHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQ 295 Query: 297 IYTNVNSKNGGDWMMEIYDQTHP 319 IYT+V + + ++ Q HP Sbjct: 296 IYTHVARER----LKTLHAQHHP 314 >gi|118444203|ref|YP_878098.1| tyrosine recombinase XerD [Clostridium novyi NT] gi|118134659|gb|ABK61703.1| tyrosine recombinase XerD [Clostridium novyi NT] Length = 292 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 85/300 (28%), Positives = 154/300 (51%), Gaps = 31/300 (10%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87 ++ LSK T+++Y D +F FL E+ I I A++ + +K D S Sbjct: 14 KKELSKNTIEAYNRDIIKFCKFLKEREED------ILDADMVSIMAYVQTLKKEKKADSS 67 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--LLHT 145 + RS+ I++F KYL + ++ ++N K ++P L VD V L+ Sbjct: 68 IIRSIVSIRNFYKYLIRMGKDVDNPLINYEVPKNKRTIPEILT-------VDEVEKFLNA 120 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 +++ R+ A+L L+Y G+++SE L +T +I ++ +G DK RI+P+ Sbjct: 121 PDCSEYKGIRDKAMLELMYATGMKVSELLRVTIFDINLKLCYVKCKGVKDKERIIPIGSY 180 Query: 206 VRKAILEYYDLCPFDLNLNIQLP------LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 + EY LN+ ++ LF +RG + F + +++ + G+ Sbjct: 181 AVNCLNEY-------LNVRDKMSAANSETLFCNLRGGKMTRQGFWKIVKKYAKDAGINKK 233 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 ++TLRHSFA HLL NG D++S+Q +LGH ++TTQIY++++ +N ++++Y + HP Sbjct: 234 IDSYTLRHSFAVHLLQNGADIKSVQELLGHNTIATTQIYSSISKQNK---IVDVYKKAHP 290 >gi|294012386|ref|YP_003545846.1| integrase/recombinase XerD [Sphingobium japonicum UT26S] gi|292675716|dbj|BAI97234.1| integrase/recombinase XerD [Sphingobium japonicum UT26S] Length = 305 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 87/304 (28%), Positives = 149/304 (49%), Gaps = 30/304 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECD---TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 +L+ + ERG S+ TL +Y D + + L+ T +++ T ++ E+ A Sbjct: 11 FLEMMAAERGASRNTLLAYRADLTGAGEIVGGLSSATRDRLAELTT---AWAELAA---- 63 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 S+ R S +++F +L++ + ++ + SLP+ L+ ++ +L Sbjct: 64 --------SSVARKSSALRAFYAFLEEEGLRADNPSSALPRPVTRRSLPKILSTQEVDSL 115 Query: 138 VDNVL--LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 + L H +D R SA++ LLYG GLR +E +SL + + D+ L ++GKG Sbjct: 116 FALIAGKLAVEHPAP-LDLRLSALIELLYGSGLRATELVSLPRRALASDRPFLILKGKGA 174 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 + R+VP+ R A+ + P D L LF + ++Q Sbjct: 175 RERLVPISDRARAAVAAWLHHVPAD-----SLWLFPSGKSHVSRIRLYQMVKALAAAAGI 229 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 P + H LRH+FATHLL G DLR++QS+LGH + TTQIYT+V+S+ ++E+ + Sbjct: 230 APERVSPHVLRHAFATHLLEGGADLRALQSMLGHADIGTTQIYTHVDSRR----LVELVN 285 Query: 316 QTHP 319 HP Sbjct: 286 SRHP 289 >gi|302343317|ref|YP_003807846.1| integrase family protein [Desulfarculus baarsii DSM 2075] gi|301639930|gb|ADK85252.1| integrase family protein [Desulfarculus baarsii DSM 2075] Length = 325 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 92/300 (30%), Positives = 146/300 (48%), Gaps = 24/300 (8%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRSL 88 G+ T Q+Y D RQ F+A K + Q+ ++RA++++R RT ++ Sbjct: 26 GVMPRTRQAYARDARQLAEFIAV----KRGGKPWGQVDADDVRAWLAERLRTSARA--TV 79 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKK-SNSLPRALNEKQALTLVDNVLLHTSH 147 R L+ +++ ++L++ + ESN + K LP L+ +A LVD + Sbjct: 80 GRKLAAARAWFEFLRRAGLV-ESNPARLAQPPKLEKKLPARLSVDEAFHLVDGP--NRPR 136 Query: 148 ETKWIDA-------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRI 199 + DA R++A+L LLY GLR+ E ++L ++ D R+ QGKG K R+ Sbjct: 137 PGRRDDAKATARRLRDAAVLELLYSSGLRVGELVALDRPDLRLDLGVARVRQGKGGKERV 196 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 VP+ +A+ Y P L G+ GV Q+ + + L + Sbjct: 197 VPVGAKAAQALERYLAARPALLAGEAAALFLNNAGGRLSVRGV-QKIVAANQDGLAIGRR 255 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRH+ ATHLL G DLRS+Q +LGH LSTTQ Y ++ D ++++YDQ HP Sbjct: 256 IGPHALRHAMATHLLEGGADLRSVQEMLGHASLSTTQKYLHLTM----DHLLKVYDQAHP 311 >gi|326316149|ref|YP_004233821.1| tyrosine recombinase XerD [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372985|gb|ADX45254.1| tyrosine recombinase XerD [Acidovorax avenae subsp. avenae ATCC 19860] Length = 303 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 82/301 (27%), Positives = 152/301 (50%), Gaps = 15/301 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 ++ L +E GLS+ TL +Y D + +L + + T + + ++A+ S R Sbjct: 14 FIDALWLEDGLSRNTLAAYRRDLALYAQWLGQHAPD--TAGALDATAEHHLKAYFSARHA 71 Query: 81 QKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + S R L+ ++ + ++ L++R+I + + ++ ++ +P+ L+ Q Sbjct: 72 ETRAT-SANRRLTVLRRYFQWALRERRIGADPTV-RLQAARQPLRVPKTLSAAQV----- 124 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 LL + + R+ A+L L+Y GLR++E ++L + + LR+ GKG K R+ Sbjct: 125 EALLQAPDTSTPLGLRDRAMLELMYASGLRVTELVTLKTYHASLSEGVLRVMGKGSKERL 184 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VP + + Y + D+ Q LF RG + +F +++ + G+ + Sbjct: 185 VPFGEVAAQWMQRYLNEARADILAGQQTDDLFVTRRGAGMTRAMFWVVVKKHAQAAGITV 244 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + HTLRH+FATHLL++G DLR +Q +LGH +STT IYT+V + + ++ Q H Sbjct: 245 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARER----LKALHAQHH 300 Query: 319 P 319 P Sbjct: 301 P 301 >gi|190893664|ref|YP_001980206.1| tyrosine site-specific integrase/recombinase [Rhizobium etli CIAT 652] gi|190698943|gb|ACE93028.1| tyrosine site-specific integrase/recombinase protein [Rhizobium etli CIAT 652] Length = 383 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 98/322 (30%), Positives = 156/322 (48%), Gaps = 27/322 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR--QLSYTEIRAFIS 76 +++L+ + ERG + TLQSYE D FL ++IR + + ++ A+++ Sbjct: 76 ESFLEMMSAERGAAANTLQSYERDLDDIRSFL--------NGRSIRLTEAASADLSAYLA 127 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 Q S R L+ ++ F K+L I T+ + KK LP+ + ++ Sbjct: 128 SLARQGFKPSSQARRLAAMRQFYKFLYAEGIRTDDPTGVLDAPKKGRPLPKTMGVEEVSR 187 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLL--YGCGLRISEALSLTPQNIMDDQST-LRIQGK 193 L+ R + L Y G+R+SE +SL P ++D + L I+GK Sbjct: 188 LLSQAQAEADDPAPGQLQRLRMLALLELLYATGMRVSELVSL-PARVLDQEGRFLMIRGK 246 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNP-GVFQRYI 247 G+K R+VPL S KA+ Y L + N + P LF + P VF R + Sbjct: 247 GNKERLVPLSQSAIKALKSYGRLLAAE-NAAAKEPQESPFLFSAASKEGYLPRQVFARDL 305 Query: 248 RQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 + L GL P + H +RH+FA+HLL+NG DLR +Q +LGH +STTQIYT+V + Sbjct: 306 KNLAIRAGLTPSLISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER- 364 Query: 307 GDWMMEIYDQTHPSITQKDKKN 328 ++ QTH + ++ KK+ Sbjct: 365 ----LQQLVQTHHPLAKQAKKH 382 >gi|126435536|ref|YP_001071227.1| site-specific tyrosine recombinase XerD [Mycobacterium sp. JLS] gi|126235336|gb|ABN98736.1| tyrosine recombinase XerD subunit [Mycobacterium sp. JLS] Length = 318 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 92/326 (28%), Positives = 155/326 (47%), Gaps = 26/326 (7%) Query: 7 PEIVSFELLKER-QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT---IQT 62 P V L ++ Q +L +L IERG++ TL SY D R++ E +T ++ Sbjct: 3 PSAVRRSALDDQLQGYLDHLTIERGVAANTLSSYRRDLRRY--------SEHLTGRGVED 54 Query: 63 IRQLSYTEIRAF-ISKRR------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115 + +++ +++ F ++ RR Q + S R+L ++ ++ +T Sbjct: 55 LAKVTESDVSDFLVALRRGDPDTGAQALSAVSAARALIAVRGLHRFATAEGLTDVDVARA 114 Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175 ++ LP++L+ + L L+D S + RN A+L LLY G RISEA+ Sbjct: 115 VKPPTPGRRLPKSLSIDEVLALLDGAG-GDSEADGPLTLRNRALLELLYSTGARISEAVG 173 Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGI 233 L ++ ++ ++GKG K R+VP+ A+ Y DL + +F Sbjct: 174 LDIDDVDTHARSVLLRGKGGKQRLVPIGRPAVSALDAYLVRGRPDLARRGRGTPAIFLNA 233 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 RG L+ + ++ G+ + + HTLRHSFATHLL G D+R +Q +LGH ++ Sbjct: 234 RGGRLSRQSAWQVLQDAADRAGITSAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVT 293 Query: 294 TTQIYTNVNSKNGGDWMMEIYDQTHP 319 TTQIYT V + E++ HP Sbjct: 294 TTQIYTMVTVHA----LREVWAGAHP 315 >gi|224025282|ref|ZP_03643648.1| hypothetical protein BACCOPRO_02021 [Bacteroides coprophilus DSM 18228] gi|224018518|gb|EEF76516.1| hypothetical protein BACCOPRO_02021 [Bacteroides coprophilus DSM 18228] Length = 314 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 83/287 (28%), Positives = 149/287 (51%), Gaps = 20/287 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 + Q L++E+ S T+ +Y D + + +L ++ + +++ ++ F + Sbjct: 14 YKQYLKLEKSFSSNTIDAYLTDLDKLMAYLTLEGKDCL------EVTLDDLETFSAGLHD 67 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 I RS R LSG+++F ++L + + + + LP L ++ L+ + Sbjct: 68 IGINARSQARILSGVRAFYRFLLLEDYIQQDPCELLESPQTGRHLPDVLTVEEIDRLIGS 127 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + +S E + RN AIL LY CGLR+SE +L ++ ++ ++++GKG K R+V Sbjct: 128 ID-RSSREGQ----RNRAILETLYSCGLRVSELCNLKLSDLYLNEGFIKVEGKGSKQRLV 182 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLG 255 P+ P KAI E + P + N + P +F GK ++ + I++L G Sbjct: 183 PISP---KAISELNNYFP-NRNAGLIKPGYEDFVFISRFGKNISRIMVFHIIKELAGMAG 238 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + + + HT RHSFATHLL G +LR+IQ +LGH + TT+IYT+++ Sbjct: 239 IKKTISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHID 285 >gi|296157219|ref|ZP_06840055.1| tyrosine recombinase XerD [Burkholderia sp. Ch1-1] gi|295892555|gb|EFG72337.1| tyrosine recombinase XerD [Burkholderia sp. Ch1-1] Length = 311 Score = 116 bits (290), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 88/296 (29%), Positives = 141/296 (47%), Gaps = 17/296 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E GLS+ TL +Y D R F +LA ++ T S ++ A+ + R QK Sbjct: 30 LWLEHGLSRNTLDAYRRDLRLFCEWLA--QSRNASLDTA---SEADLNAYSAAR--QKDK 82 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S R LS + + + + T + +R+ K+ P L E Q L+ + Sbjct: 83 STSANRRLSVFRRYYSWAVREHRTKIDPTVRIRSAKQPPRFPSTLTEAQVEALLGAPDVD 142 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 T + R+ +L L+Y GLR++E ++L + ++ +R+ GKG K R++P Sbjct: 143 TP-----LGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVMGKGSKERLIPFGE 197 Query: 205 SVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 I Y + P L LF R + + F I++ G+ + H Sbjct: 198 EAHGWIERYLREARPVLLGARATDALFVTSRAEGMTRQQFWNIIKRHAAAAGVNAPLSPH 257 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 TLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V + + ++ Q HP Sbjct: 258 TLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARER----LKSLHAQHHP 309 >gi|227875332|ref|ZP_03993474.1| tyrosine recombinase [Mobiluncus mulieris ATCC 35243] gi|227844237|gb|EEJ54404.1| tyrosine recombinase [Mobiluncus mulieris ATCC 35243] Length = 319 Score = 116 bits (290), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 90/310 (29%), Positives = 150/310 (48%), Gaps = 22/310 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK- 77 Q++L L +ERG S T+ +Y+ D ++++ +L + T+ Q++ ++ F+ Sbjct: 18 QDFLNYLSVERGASPHTIAAYQRDLQRYVAYLQILGRD-----TLAQVTEVDLEGFVRAL 72 Query: 78 ----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 +G S++R L+ +S+ +YL + S N+ + K LPR L E Sbjct: 73 GDGFASFPPLGSTSVRRCLAAARSWHRYL----FDSGSLGANVASSVKPAKLPRRLPETL 128 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQ 191 +L ++ +L S R+ A+L LY G RISEA++L +I + + +R+ Sbjct: 129 SLEEMEALLAAASSPGDSNSLRDRALLEFLYASGARISEAMNLVLDDIDFETEPALVRLF 188 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQ 249 GKG K RI L +A+ Y L Q +F GKP++ I+ Sbjct: 189 GKGRKERISMLGHQACQALQAYLVRVRPTLAEKGQSRGRVFLNTYGKPMSRQTAWAIIQA 248 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 + + HTLRH FATHLL G D+R +Q +LGH ++TT+IYT V+ + Sbjct: 249 AAKRAQIDRPVHPHTLRHCFATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQ----M 304 Query: 310 MMEIYDQTHP 319 ++E+Y HP Sbjct: 305 LLEVYASAHP 314 >gi|212550679|ref|YP_002308996.1| site-specific recombinase XerD [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548917|dbj|BAG83585.1| site-specific recombinase XerD [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 299 Score = 116 bits (290), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 85/278 (30%), Positives = 141/278 (50%), Gaps = 12/278 (4%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E+ LS ++ +Y D + L +L ++ + ++ ++++ + I Sbjct: 14 LLLEKALSHNSVNAYMSDLEKLLKYLDSIGKDLLNVEL------SDLQKMFTTLCEMGIH 67 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 RS R +SGIKSF +L+ T + + + K LP L + +++ + L Sbjct: 68 PRSQARIISGIKSFYYFLELEDQITNNPTEYLESPKVGRKLPEFLTVNEINSIIATIDL- 126 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 +K RN AI+ LY CGLRISE + L+ + D+ L+I GKG+K RIVP+ Sbjct: 127 ----SKPNGQRNRAIIETLYSCGLRISELVKLSFSDFFPDEGFLKINGKGNKQRIVPISN 182 Query: 205 SVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 S K I Y D + + +F RG L+ + ++ G+ + + H Sbjct: 183 SAIKEIQLYLIDRQRSSIEKEFENIIFLNRRGTRLSRVMVFYLVKGCTVQAGIKKNVSPH 242 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T RHSFATHLL G +LR+IQ++LGH ++TT+IYT++ Sbjct: 243 TFRHSFATHLLEGGANLRAIQAMLGHENITTTEIYTHL 280 >gi|332976670|gb|EGK13510.1| integrase/recombinase XerD [Psychrobacter sp. 1501(2011)] Length = 312 Score = 116 bits (290), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 84/297 (28%), Positives = 147/297 (49%), Gaps = 22/297 (7%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 + RGLS T +Y D + E + + T++ ++ Q R Sbjct: 32 LARGLSTRTRNAYVRDLKHC---------ETTNPKALTLWDDTDVMQCLTTLNKQGKTPR 82 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 + R LS ++ F ++ + ++ ++ K SLP+ L+E LL Sbjct: 83 TQARMLSSLRQFYLWMVGNERREDNPCERIKTPKIGRSLPKDLSENDV-----ESLLSAP 137 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 + + R+ A+L +LY CGLR+SE ++L+ + + + L+I GKG+K R+VPL Sbjct: 138 DTSTALGLRDKAMLEVLYACGLRVSELMNLSLEQVNLNAGWLQITGKGNKTRLVPLGEYA 197 Query: 207 RKAILEYYDLCPFDLNLNIQ----LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 +A+ +Y +L +++ +F +G + F I++ + G+ + Sbjct: 198 SEALDDYLSHARGELVAHLKSGNCQAVFLTTQGGYMTRQNFWYMIKKYAKQAGIESDLSP 257 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HTLRH+FATHLL++G DLRS+Q +LGH LSTTQIYT+V + + ++++ HP Sbjct: 258 HTLRHAFATHLLNHGADLRSVQLLLGHSDLSTTQIYTHVATAR----LQQLHEAHHP 310 >gi|313638152|gb|EFS03409.1| tyrosine recombinase XerC [Listeria seeligeri FSL S4-171] Length = 300 Score = 116 bits (290), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 88/309 (28%), Positives = 152/309 (49%), Gaps = 21/309 (6%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 K Q +L L ER S+ T +YE D F FL E+ IT Q+++ ++R ++ Sbjct: 6 KWEQLFLDYLHSERNYSENTSTAYENDLIDFRRFL---NEQAIT--EYSQVTFLDVRIYL 60 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 ++ + + ++ R +S ++SF +L + + TE+ + + K LP+ ++ Sbjct: 61 TELKQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEME 120 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L +++ +ET + R+ +L +LYG G+R+SE + +I + I+GKG+ Sbjct: 121 ALFQ--VVYEDNET--LTLRDRVLLEVLYGTGIRVSECAGILLTDIDKTYQAILIRGKGN 176 Query: 196 KIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 K R VP AI +Y D + F+ L G+PL + + ++ Sbjct: 177 KERYVPFGAYAEDAITDYLDSRIELMKHFN---KTHDSLLINHYGEPLTTRGIRYCLTKI 233 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 L H LRH+FAT LL+NG D+R++Q +LGH LS+TQIYT+V ++ + Sbjct: 234 ISKASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH----L 289 Query: 311 MEIYDQTHP 319 Y + HP Sbjct: 290 KSTYMKHHP 298 >gi|222151085|ref|YP_002560239.1| tyrosine recombinase XerC protein [Macrococcus caseolyticus JCSC5402] gi|222120208|dbj|BAH17543.1| tyrosine recombinase XerC protein [Macrococcus caseolyticus JCSC5402] Length = 290 Score = 116 bits (290), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 86/285 (30%), Positives = 142/285 (49%), Gaps = 19/285 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +L L+ ER S T+ +Y+ D QF+ FL +E++ +T Y + R ++ + Sbjct: 7 QRFLTYLKNERNFSDHTVTAYKNDVLQFIAFLE---QEQLDFRT---FEYRDARNYLVSQ 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN-ILNMRNLKKSNSLPRALNEKQALTL 137 + + ++ R +S ++SF +L ESN + + + K+ LP EK+ L Sbjct: 61 YNKGLERTTVSRRISALRSFYGFLYD---GDESNPFVQLVHPKQKKYLPEFFYEKEMTLL 117 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 +++ + +K R+ IL +LY G+R+SE + L T+++ GKG K Sbjct: 118 FNSIDM-----SKPFAVRDKFILEMLYATGMRVSEFIELKSDAFDLGLMTVKVMGKGRKE 172 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 RI+P +++L+Y D F ++ I L RG PL + L + Sbjct: 173 RIIPYGAYAHRSLLDYMD---FRNSMTITHDYLLINQRGGPLTARGLTYILDMLIKRSSA 229 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 H LRH+FATHLL+NG DLR++Q +LGH LSTT YT++ Sbjct: 230 DGHIHPHKLRHTFATHLLNNGADLRTVQELLGHVNLSTTSKYTHI 274 >gi|320107746|ref|YP_004183336.1| integrase family protein [Terriglobus saanensis SP1PR4] gi|319926267|gb|ADV83342.1| integrase family protein [Terriglobus saanensis SP1PR4] Length = 319 Score = 116 bits (290), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 93/319 (29%), Positives = 149/319 (46%), Gaps = 35/319 (10%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L L ERG+S TL++Y TR+ F AF + ++Q+ + IR++++ Sbjct: 10 SFLAMLRDERGVSAHTLRAY---TRELNDFTAFLADLLGNEAEVKQVEHLHIRSYLAVLY 66 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + + S R+L+ ++S+ K+L K ++ L + K LPR + ++ ++D Sbjct: 67 DRGLSRASAARALAAVRSWFKWLAKEGKVQQNPALLVSTPKLPKHLPRVPSAEEVNRVLD 126 Query: 140 NV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 ++ W + R+ I LLYGCG+R SE + + I + + GKG K Sbjct: 127 SIEQTGKKDESASWPE-RDRVIWELLYGCGIRNSELVGIDLSAIDWKNDAILVLGKGRKE 185 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF-------------- 243 R VPL + A+ Y + L +GK ++ G Sbjct: 186 RYVPLGDAANSAMRAYMP--------QREAKLQAAGKGKWMHSGPLLINLVARGDCRLTT 237 Query: 244 ---QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 R ++ + GLP HTLRH+F THLL G DLR+IQ +LGH RLSTTQ YT Sbjct: 238 RSVGRIVKAIAVNRGLPADVHPHTLRHAFGTHLLEEGADLRAIQEMLGHERLSTTQRYTQ 297 Query: 301 VNSKNGGDWMMEIYDQTHP 319 + + +Y+QTHP Sbjct: 298 LTVTQ----VQTVYEQTHP 312 >gi|294674799|ref|YP_003575415.1| tyrosine recombinase XerC [Prevotella ruminicola 23] gi|294473941|gb|ADE83330.1| tyrosine recombinase XerC [Prevotella ruminicola 23] Length = 292 Score = 116 bits (290), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 90/303 (29%), Positives = 153/303 (50%), Gaps = 21/303 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L ER S LT+Q+YE R F ++ F +E +I + IR ++ Sbjct: 5 FLDYLRYERNTSPLTVQTYEESLRDFESYVTFRDKE----LSISSVDTDLIRDWMESLMD 60 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + ++ + LS ++SF ++ KR++ + KKS LP+ L E + L+D Sbjct: 61 KGNSASTINKKLSALRSFYRFALKRQLVKTDPAHAVIGPKKSKPLPQFLREGEMDRLIDG 120 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + +S + + R IL L Y GLR +E +SL +++ D + L++ GK +K RIV Sbjct: 121 IEWDSS----FNNVRARTILLLFYEAGLRRAELVSLNDKDVDFDAAQLKVTGKRNKQRIV 176 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG-VFQRYIRQLRRYLGLPLS 259 P + +A L+ Y + LF +G+ ++ V+Q +++YL + S Sbjct: 177 PFGAELAEA-LKQYQTARNEQFGETGGALFLSDKGQRISDSQVYQ----IVKKYLSMVTS 231 Query: 260 ---TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FAT +L+NG L +I+S+LGH +STT+IYT+ + + IY + Sbjct: 232 LKKRSPHVLRHTFATAMLNNGAGLETIKSLLGHASVSTTEIYTHTTFEQ----LKRIYKE 287 Query: 317 THP 319 HP Sbjct: 288 AHP 290 >gi|15892414|ref|NP_360128.1| site-specific tyrosine recombinase XerD [Rickettsia conorii str. Malish 7] gi|34222952|sp|Q92IC9|XERD_RICCN RecName: Full=Tyrosine recombinase xerD gi|15619566|gb|AAL03029.1| integrase/recombinase [Rickettsia conorii str. Malish 7] Length = 306 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 95/309 (30%), Positives = 151/309 (48%), Gaps = 50/309 (16%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ L ER LSK ++ SY+ D F +LA + ++ I T IR +I + Sbjct: 7 FLEMLLAERALSKNSILSYKRDLFDFQNYLAKHKLSELNITT------ENIRDWIEYLAS 60 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS+ R +S IKS+ ++L T + +LN+ K N LP L+ Q + + Sbjct: 61 NDLQARSINRKISTIKSYYEFLISENHTAFNPVLNVDLPKYQNKLPEILSIAQ----IKS 116 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-------LRIQGK 193 +L H S + R +A+++LLY GLR+SE +SL +I+ ++++ + GK Sbjct: 117 LLEHCSQDNSPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNKTSKGEVRKIFSVLGK 176 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI---RGKPLN----------P 240 G+K R++ + +I +Y + RG+ + KP N Sbjct: 177 GNKERVIVINEQAVISIAKYLTI--------------RGVFVNKAKPRNLIYLFPSSALA 222 Query: 241 GVFQR-----YIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 G R ++ Y GL P + H LRHSFA+HLL G DLR IQ +LGH +ST Sbjct: 223 GYMTRQNFAILLKSAALYAGLNPEYISPHILRHSFASHLLEGGADLRVIQELLGHADIST 282 Query: 295 TQIYTNVNS 303 TQIYT++ + Sbjct: 283 TQIYTHLQT 291 >gi|126666597|ref|ZP_01737575.1| Tyrosine recombinase XerC [Marinobacter sp. ELB17] gi|126628985|gb|EAZ99604.1| Tyrosine recombinase XerC [Marinobacter sp. ELB17] Length = 324 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 87/313 (27%), Positives = 153/313 (48%), Gaps = 20/313 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF--------YTEEKITIQTIRQLSYTEI 71 ++++L E+ LS LT + Y+ D + +L +++E I + R L+ +I Sbjct: 19 GFIRHLASEKRLSPLTCEHYQRDLLRLQRWLQEGYQEYSLNHSQEHSEI-SWRSLNSHDI 77 Query: 72 RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131 R +++ + RS+ R LS I+ F YL + + S +R K LP + Sbjct: 78 RRYVAHLSRASLNGRSIARHLSAIRRFYHYLLREGLVDNSPAEAIRAPKSGRRLPVVADV 137 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 Q L+D + ++ R+ I LLY GLR++E +L + + +++ Sbjct: 138 DQLTHLLD------AQADDPLELRDVCIFELLYSAGLRLAEVAALDLGTVELAAAQVKVT 191 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 GKG+K R++P+ A+ + + P L Q LF RG L+ Q + + Sbjct: 192 GKGNKQRVLPVGRPALAALQAWLAVRP-GLAGAGQQALFVSRRGDRLSHRSIQARLARWG 250 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 G H LRHSFA+HLL + GDLR++Q +LGH ++TTQ+YT+++ ++ + Sbjct: 251 LVKGADQKLHPHMLRHSFASHLLESSGDLRAVQELLGHADIATTQVYTHLDFQH----LA 306 Query: 312 EIYDQTHPSITQK 324 +YDQ+HP ++ Sbjct: 307 SVYDQSHPRAKRR 319 >gi|86283512|gb|ABC92575.1| tyrosine site-specific integrase/recombinase protein [Rhizobium etli CFN 42] Length = 383 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 97/320 (30%), Positives = 152/320 (47%), Gaps = 26/320 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR--QLSYTEIRAFIS 76 +++L+ + ERG + TLQSYE D FL ++IR + + ++ A+++ Sbjct: 76 ESFLEMMSAERGAAANTLQSYERDLDDVRSFL--------NGRSIRLTEAASADLAAYLA 127 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 Q S R L+ ++ F K+L + T+ + KK LP+ + ++ Sbjct: 128 SLARQGFKPSSQARRLAAMRQFYKFLYAEGLRTDDPTGVLDAPKKGRPLPKTMGVEEVGR 187 Query: 137 LVDNVLLHTSHETKWIDARNS--AILYLLYGCGLRISEALSLTPQNIMDDQST-LRIQGK 193 L+ R A+L LLY G+R+SE +SL P ++D + L I+GK Sbjct: 188 LLSQAQTEADDPAPGQLQRRRMLALLELLYATGMRVSELVSL-PARVLDQEGRFLMIRGK 246 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNP-GVFQRYI 247 G+K R+VPL S A+ Y L + P LF + P VF R + Sbjct: 247 GNKERLVPLSHSAIAALKSYGRLL-AADAAAAKEPQESPWLFPAASKEGYLPRQVFARDL 305 Query: 248 RQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 + L GL P + H +RH+FA+HLL+NG DLR +Q +LGH +STTQIYT+V + Sbjct: 306 KNLAIRAGLTPSLISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER- 364 Query: 307 GDWMMEIYDQTHPSITQKDK 326 + ++ HP Q K Sbjct: 365 ---LQQLVQMHHPLAKQAKK 381 >gi|220935295|ref|YP_002514194.1| tyrosine recombinase XerD [Thioalkalivibrio sp. HL-EbGR7] gi|219996605|gb|ACL73207.1| tyrosine recombinase XerD [Thioalkalivibrio sp. HL-EbGR7] Length = 308 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 95/310 (30%), Positives = 144/310 (46%), Gaps = 35/310 (11%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L + E GLS TL +Y D L+ LA + + + + Q ++ A++S R Sbjct: 21 FLDAIWAEHGLSDHTLAAYRAD----LMALARWLGPRG--KRVEQADRGDLLAYLSHRVA 74 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 RS R LS ++ F ++ + + + + K LP L+E T V+ Sbjct: 75 GGARPRSTARLLSSLRRFYRHQVRDGRRQDDPTAQIDSPKLGRPLPDTLSE----TDVEA 130 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 +L +T + R+ A+L LLY GLR+SE + L + +R GKG K R+V Sbjct: 131 LLASPDTDTD-LGLRDRAMLELLYATGLRVSELVGLRVDQVNLRHGVVRTLGKGSKERLV 189 Query: 201 PL-----------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 PL L + R A+L C LF RG + F +R+ Sbjct: 190 PLGEEASVWVERYLGAARPALLAGQGACD---------DLFVTRRGGAMTRQAFWHLLRR 240 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 G+ + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V Sbjct: 241 YAAQAGIHKHLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARAR---- 296 Query: 310 MMEIYDQTHP 319 + E++ + HP Sbjct: 297 LKELHGKHHP 306 >gi|227833388|ref|YP_002835095.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975] gi|227454404|gb|ACP33157.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975] Length = 303 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 86/315 (27%), Positives = 157/315 (49%), Gaps = 30/315 (9%) Query: 10 VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTR----QFLIFLAFYTEEKITIQTIRQ 65 V +L + +++ + I RG S+ T++ Y D R + F AF T+ ++R+ Sbjct: 12 VGGQLEEAIEDFAEYQRIVRGRSEATVRGYCSDLRLLAPEVPEFAAF------TLNSLRE 65 Query: 66 LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNS 124 +++ + +L R + +++F + R+ ES++ + K Sbjct: 66 --------WLAHAVAEGKSRSTLARRTAAVRAFSTW-AAREGYLESDVAQRLATPKVGKH 116 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 LP ++ A L+ N + ++ E ++ R+SA+L LY G+R++E + L +I Sbjct: 117 LPTVMSPTAAGELMGNAV--STDEVHFL--RDSAMLEFLYATGVRVAELVGLDVGDIDLS 172 Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 + T R+ GKG+K R+VP + A+ + +L + +F G RG ++ + Sbjct: 173 RRTARVTGKGNKQRVVPFGDAAHDALCAWLKTGRPELAGETE-AVFVGTRGGRIDARQVR 231 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 R + + + G P T H LRHS ATHLL G DLR +Q +LGH L TTQ+YT+V+++ Sbjct: 232 RVVERAAQVTGAP-GLTPHGLRHSAATHLLEGGADLRIVQELLGHSSLQTTQVYTHVSAQ 290 Query: 305 NGGDWMMEIYDQTHP 319 + ++Y ++HP Sbjct: 291 R----LKDVYARSHP 301 >gi|15895336|ref|NP_348685.1| XerD family integrase/recombinase [Clostridium acetobutylicum ATCC 824] gi|34222991|sp|Q97HE5|XERD_CLOAB RecName: Full=Tyrosine recombinase xerD gi|15025053|gb|AAK80025.1|AE007709_9 Integrase/recombinase XerD family [Clostridium acetobutylicum ATCC 824] gi|325509481|gb|ADZ21117.1| Integrase/recombinase XerD family [Clostridium acetobutylicum EA 2018] Length = 292 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 85/292 (29%), Positives = 153/292 (52%), Gaps = 15/292 (5%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87 ++ LS T+ +Y D ++F FL +EK + +R++ I +++ + + S Sbjct: 14 KKNLSLNTIDAYRRDIKKFHEFL----DEKG--EKLREVDVITIMSYVQYLQKNGRANSS 67 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 + R++ I++F KYL+ + I ++ + K + P L ++ V+ +L+ Sbjct: 68 IVRNIVSIRNFFKYLEIKGIMDDNPVTQYEMPKIRRNFPDILTIEE----VEKLLMGPDG 123 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207 T R+ A+L ++Y G++++E L+LT +I S ++ +G +K RI+P+ Sbjct: 124 NTDK-GIRDKAMLEIMYATGMKVTELLNLTIYDINLKLSYIKCRGIKNKERIIPMGSYAV 182 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 K LE Y LN+ LF ++G + F + I+Q + G+ A+TLRH Sbjct: 183 KC-LEIYLKVRTKLNVQNIDYLFFNLQGDKMTRQGFWKIIKQYAQESGIKKKINAYTLRH 241 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 SFA HLL NG D+++IQ +LGH ++TTQIY+ + K + E+Y +THP Sbjct: 242 SFAVHLLQNGADIKTIQELLGHSDMATTQIYSGMYRKT---RIAEVYKKTHP 290 >gi|218680623|ref|ZP_03528520.1| site-specific tyrosine recombinase XerD [Rhizobium etli CIAT 894] Length = 311 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 95/299 (31%), Positives = 149/299 (49%), Gaps = 30/299 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L+ + ERG + TLQSYE D FL E I + + + ++ A+++ Sbjct: 10 ESFLEMMSAERGAAANTLQSYERDLDDVSAFL---KERGIRLT---EAASADLAAYLASL 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S R L+ ++ F K+L + T+ + KK LP+ + ++ L+ Sbjct: 64 ARKGFKPSSQARRLAAMRQFYKFLYAEGLRTDDPTGILDAPKKGRPLPKTMGVEEVGKLL 123 Query: 139 DNVLLHTSHETKWIDARNSAI--------LYLLYGCGLRISEALSLTPQNIMDDQST-LR 189 ET+ DA + L LLY G+R+SE +SL P ++D + L Sbjct: 124 SQA------ETEAQDAAPGQLQRLRMLALLELLYATGMRVSELVSL-PARVLDQEGRFLM 176 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNP-GVF 243 I+GKG+K R+VPL S A+ Y L + N ++ P LF + P VF Sbjct: 177 IRGKGNKERLVPLSQSAISALKSYGRLLAAE-NAAVKDPQESPWLFPAASKEGYLPRQVF 235 Query: 244 QRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 R ++ L GL P + H +RH+FA+HLL+NG DLR +Q +LGH +STTQIYT+V Sbjct: 236 ARDLKNLAIRAGLTPSMISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHV 294 >gi|34580584|ref|ZP_00142064.1| integrase/recombinase [Rickettsia sibirica 246] gi|229586627|ref|YP_002845128.1| site-specific tyrosine recombinase XerD [Rickettsia africae ESF-5] gi|28261969|gb|EAA25473.1| integrase/recombinase [Rickettsia sibirica 246] gi|228021677|gb|ACP53385.1| Tyrosine recombinase XerD [Rickettsia africae ESF-5] Length = 306 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 95/311 (30%), Positives = 152/311 (48%), Gaps = 50/311 (16%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ L ER LSK ++ SY+ D F +LA + ++ I T IR +I + Sbjct: 7 FLEMLLAERALSKNSILSYKRDLFDFQNYLAKHKLSELNITT------ENIRDWIEYLAS 60 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS+ R +S IKS+ ++L T + +LN+ K N LP L+ Q + + Sbjct: 61 NDLQARSINRKISTIKSYYEFLISENHTAFNPVLNVDLPKYQNKLPEILSIAQ----IKS 116 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-------LRIQGK 193 +L H S + R +A+++LLY GLR+SE +SL +I+ ++++ + GK Sbjct: 117 LLEHCSQDNSPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNKTSKGEVRKIFSVLGK 176 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI---RGKPLN----------P 240 G+K R++ + +I +Y + RG+ + KP N Sbjct: 177 GNKERVIVINEQAVISIAKYLAI--------------RGVFVNKAKPRNLIYLFPSSALA 222 Query: 241 GVFQR-----YIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 G R ++ Y GL P + H LRHSFA+HLL G DLR IQ +LGH +ST Sbjct: 223 GYMTRQNFAILLKSAALYAGLNPEYISPHILRHSFASHLLEGGADLRVIQELLGHADIST 282 Query: 295 TQIYTNVNSKN 305 TQIYT++ + + Sbjct: 283 TQIYTHLQTNH 293 >gi|149199225|ref|ZP_01876263.1| tyrosine recombinase [Lentisphaera araneosa HTCC2155] gi|149137650|gb|EDM26065.1| tyrosine recombinase [Lentisphaera araneosa HTCC2155] Length = 292 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 87/278 (31%), Positives = 140/278 (50%), Gaps = 11/278 (3%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +ERGLS+ T+ +Y D F Y E+K+ + ++ ++ + + +++ Sbjct: 9 LSLERGLSQNTIDAYINDLNDF----TAYQEQKLN-KEYPSINKDDLLNYCEDCKNRELN 63 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 D ++ R L +K F ++L + KI + ++ + + S LP L +L ++ LLH Sbjct: 64 DSTISRRLVTLKIFFRFLYQEKIVPKDVGEHLESARLSRLLPDYL----SLPEIER-LLH 118 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 E + RN I+ LLY CGLRISE L + + LR++GKG K R VP Sbjct: 119 IYDEAIPLQFRNKFIIELLYSCGLRISELCGLRTDSFNYESGFLRVKGKGSKERSVPFGT 178 Query: 205 SVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 V +Y ++ P N L G+PL +++++ + + H Sbjct: 179 QVASMSRQYIKNIRPQLCKKNNPPELIVSNNGRPLTRSRVWQFLKEAAIKAEINKNLHPH 238 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 LRHSFA+HLLSN DLR IQ +LGH ++TT+IYT+V Sbjct: 239 VLRHSFASHLLSNNADLRIIQELLGHADIATTEIYTHV 276 >gi|227510442|ref|ZP_03940491.1| site-specific recombinase XerD [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190094|gb|EEI70161.1| site-specific recombinase XerD [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 331 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 93/318 (29%), Positives = 158/318 (49%), Gaps = 23/318 (7%) Query: 15 LKERQN---WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71 + +R+N +L+ L ER S+ T+Q+Y+ D +FL FL +++ ++ I L ++ Sbjct: 22 MDDRKNMDWFLKYLRSERHYSEDTVQAYQNDLTEFLKFLNETSKDHTSLIKIDSL---DV 78 Query: 72 RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRAL- 129 ++++ +K S+ + +S ++SF +L K ++ ++N +LK N LPR Sbjct: 79 ESYLTGLYDKKYARNSIAQKVSALRSFYSFLIKNEVI-KNNPFEYVHLKNQNRRLPRFFY 137 Query: 130 -NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 E QAL + + RNSAIL + Y G+R+SE +++ ++I + + Sbjct: 138 PTEMQAL------FSAAKKGERKLAFRNSAILEVFYSTGIRVSEGVTIQLKDIDLENQLI 191 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQR 245 + GKG K R +P ++A+ Y L LF GKPL + Sbjct: 192 LVTGKGRKQRYLPFGKPAKQAVENYLKESREPLMTKYHQKHDYLFINHFGKPLTSRGIEY 251 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + + + L + H LRH+FAT +L+NG D+RS+Q +LGH LSTTQIYT+V + Sbjct: 252 ILDGIIKQSSLTTNIHPHMLRHTFATEMLNNGADMRSVQELLGHSSLSTTQIYTHVTKSH 311 Query: 306 GGDWMMEIYDQTHPSITQ 323 +M Y + P Q Sbjct: 312 ----LMNDYQKYFPRNNQ 325 >gi|325143762|gb|EGC66079.1| tyrosine recombinase XerC [Neisseria meningitidis M01-240013] Length = 305 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 86/308 (27%), Positives = 148/308 (48%), Gaps = 17/308 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI--TIQTIRQLSYTEIRAFISKR 78 +L+N+ + G S+ T+ +Y D + LA E Q + Q +T +S+R Sbjct: 13 YLENI-VREGKSEHTVAAYRRDLEELFALLAQMPSEAEGGVPQGLSQRDFTAALRRLSQR 71 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + R+L R LS + + +L +R + +++ K+ +P+AL ++ ++ Sbjct: 72 ---GLNARTLARKLSSWRQYCVWLVERGLMRADPTADIKPPKQPERVPKALPQEWLNRML 128 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + + R+ A+ L+YG GLR+SE L ++ D++ + + GKG K R Sbjct: 129 DLPVDGGDP----LAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQR 184 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VPL +A+ Y P + LF G G L+ Q+ + Q G Sbjct: 185 QVPLTGKSVEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGR 241 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + H +RHS+A HLL D+R++Q +LGH LSTTQIYT ++ D + +YD+ H Sbjct: 242 HVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAH 297 Query: 319 PSITQKDK 326 P ++D+ Sbjct: 298 PRAKRQDE 305 >gi|261867252|ref|YP_003255174.1| site-specific tyrosine recombinase XerC [Aggregatibacter actinomycetemcomitans D11S-1] gi|293391244|ref|ZP_06635578.1| tyrosine recombinase XerC [Aggregatibacter actinomycetemcomitans D7S-1] gi|261412584|gb|ACX81955.1| tyrosine recombinase XerC [Aggregatibacter actinomycetemcomitans D11S-1] gi|290951778|gb|EFE01897.1| tyrosine recombinase XerC [Aggregatibacter actinomycetemcomitans D7S-1] Length = 296 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 96/308 (31%), Positives = 151/308 (49%), Gaps = 20/308 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q++ L +ER +S TL +Y+ RQ A IT +Q++ + +R +++ Sbjct: 6 QHYFTYLRVERQVSPHTLSNYQ---RQLARVTAILQGAGIT--QWQQVTASVVRYVVAQS 60 Query: 79 RTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 Q + ++SL LS ++ FL YL ++ + + K++ LP+ ++ Q L Sbjct: 61 SKQDGLKEKSLALRLSALRRFLTYLVQQGELKVNPATGISAPKQAKHLPKNIDTDQVQLL 120 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 + N S E ID R+ AI+ LLY GLR+SE L +I +R+ GKG+K Sbjct: 121 LAN----DSKEP--IDIRDRAIIELLYSSGLRLSELQGLNLNSIHLRSREVRVIGKGNKE 174 Query: 198 RIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 R+VP AI ++ + F+ N LF G ++ Q + GL Sbjct: 175 RVVPFGRYASHAIQQWLKVRLLFNPKDN---ALFVSQLGNRMSHRAIQMRLETWGIRQGL 231 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 H LRHSFATH+L DLR++Q +LGH LSTTQIYT++N ++ + +YD Sbjct: 232 NSHLNPHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAAVYDA 287 Query: 317 THPSITQK 324 HP +K Sbjct: 288 AHPRAKRK 295 >gi|163848038|ref|YP_001636082.1| integrase family protein [Chloroflexus aurantiacus J-10-fl] gi|222525926|ref|YP_002570397.1| integrase family protein [Chloroflexus sp. Y-400-fl] gi|163669327|gb|ABY35693.1| integrase family protein [Chloroflexus aurantiacus J-10-fl] gi|222449805|gb|ACM54071.1| integrase family protein [Chloroflexus sp. Y-400-fl] Length = 286 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 85/292 (29%), Positives = 141/292 (48%), Gaps = 19/292 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L + ER +S T +Y D Q FL + I+ + + AF+ + Sbjct: 8 FLAYIADERKMSANTTIAYRTDLDQLCAFL-----HERGIEHWSDVDSETMMAFVINLKE 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 ++ + ++ R L+ IKSF +LK+R + + + PRA+++ Q L++ Sbjct: 63 KRYANSTMARRLAAIKSFFSFLKERNVIHHDPTDQLDAPRVDRFPPRAISQHQVDELLEV 122 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 L + + E R+ A+L +LY G+R+SE ++L ++ D T+R +G+ + R + Sbjct: 123 PLQNGTPEG----IRDKAMLEVLYATGMRVSELVALNVDDVAFDHRTVRCRGRQGRERTI 178 Query: 201 PLLPSVRKAILEYYDLC-PFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYL 254 PL A+ EY D+ P L Q P LF RGK L F ++ + Sbjct: 179 PLSDPALTALEEYLDIARP---QLARQAPDDPEALFLNHRGKRLTRQGFWLILKTYAEQV 235 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 G+ T H LRHSFA H L NG DLR +Q LGH ++TTQ+Y ++ ++ Sbjct: 236 GMH-DLTPHMLRHSFAAHQLRNGVDLRELQERLGHASIATTQMYAHLAEESS 286 >gi|54023975|ref|YP_118217.1| site-specific tyrosine recombinase XerD [Nocardia farcinica IFM 10152] gi|54015483|dbj|BAD56853.1| putative recombinase [Nocardia farcinica IFM 10152] Length = 316 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 93/322 (28%), Positives = 149/322 (46%), Gaps = 26/322 (8%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 L +E +L +L +ERG ++ TL +Y D ++ FL TE I + Q+ ++ A Sbjct: 2 LAREIDAYLDHLAVERGAARNTLGAYRRDLGRYRDFL---TERGI--GGLEQVREADVAA 56 Query: 74 FISKRRTQKIGDR------SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127 F R+ GD S+ R+L ++ ++ +T+ ++ LP+ Sbjct: 57 FTVALRSGG-GDHPPLAASSVARALIAVRGLHRFAAAEGMTSTDVAHAVKPPTPGRRLPK 115 Query: 128 ALNEKQALTLVDNVLLHTSHE--TKWIDA-----RNSAILYLLYGCGLRISEALSLTPQN 180 AL Q L L++ + + T D R+ A+L LLY G RISE + L + Sbjct: 116 ALPYDQVLRLLEAAGGGPAEDGDTAAADGGPRGLRDRALLELLYSTGARISEMVGLDVDD 175 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PF--DLNLNIQLPLFRGIRGKP 237 + + + ++GKG K RIVP+ A+ Y P LF +RG Sbjct: 176 LDTTERAVVLRGKGGKQRIVPIGRPALAAVDAYLVRGRPVLAAAGKGTGGALFLNVRGGR 235 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L+ + ++ G+ + + HTLRHSFATHLL G D+R +Q +LGH ++TTQI Sbjct: 236 LSRQSAWQVLQTAAERAGIGAAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQI 295 Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319 YT V + E++ HP Sbjct: 296 YTLVTVST----LREVWATAHP 313 >gi|116492727|ref|YP_804462.1| tyrosine recombinase XerC subunit [Pediococcus pentosaceus ATCC 25745] gi|122265809|sp|Q03FK2|XERC_PEDPA RecName: Full=Tyrosine recombinase xerC gi|116102877|gb|ABJ68020.1| tyrosine recombinase XerC subunit [Pediococcus pentosaceus ATCC 25745] Length = 301 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 94/285 (32%), Positives = 145/285 (50%), Gaps = 17/285 (5%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 Q L +ER S+ T+ +Y D F FL T +K + + + ++ ++S + Sbjct: 9 QYLTVERQYSEKTVTAYLEDIDAFQKFLT-DTGDKTDLLLVDRF---DVNVYMSYLFDRH 64 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK-SNSLPRALNEKQALTLVDNV 141 + S+ R +S ++SF ++L K + + N + LKK S+ LP EK+ N+ Sbjct: 65 LARTSISRKVSALRSFYRFLVKNDLV-DKNPFELVQLKKQSDKLPHFFYEKEM-----NM 118 Query: 142 LLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 L ++ + RN AIL +LYG G+R+SE +L +I T+ + GKG+K R V Sbjct: 119 LFEAVYQAEGAQKLRNIAILEVLYGTGMRVSECAALQWSDIDFSMQTILVLGKGNKERYV 178 Query: 201 PLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLGL 256 P ++A+ Y + PF L+ Q F I KP+ + + Q+ L Sbjct: 179 PFGRYAKEALQNYRKNEWEPF-LSKYKQTHNFVFINHYAKPITTTGIEYILNQVITASSL 237 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 H LRHSFAT LL+NG DLR++Q +LGH LSTTQIYT+V Sbjct: 238 NGKIHPHMLRHSFATALLNNGADLRTVQELLGHSSLSTTQIYTHV 282 >gi|309379484|emb|CBX21850.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 334 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 85/306 (27%), Positives = 145/306 (47%), Gaps = 13/306 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+N+ + G S+ T+ +Y D + LA E + LS + A + + Sbjct: 42 YLENI-VREGKSEHTVAAYRRDLEELFALLAQMPSE-AEGGVPQDLSRRDFTAALRRLSQ 99 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + R+L R LS + + +L KR + + K+ +P+AL ++ ++D Sbjct: 100 RGLNARTLARKLSSWRQYCAWLVKRGLMRTDPTAGISPPKQPQRIPKALPQEWLNRMLDL 159 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + + R+ A+ L+YG GLR+SE L ++ D++ + + GKG K R V Sbjct: 160 PV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQV 215 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 PL +A+ Y P + LF G G L+ Q+ + Q G Sbjct: 216 PLTGKSAEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAINGDGRHV 272 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 + H +RHS+A HLL D+R++Q +LGH LSTTQIYT ++ D + +YD+ HP Sbjct: 273 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAHPR 328 Query: 321 ITQKDK 326 +++K Sbjct: 329 AKRQEK 334 >gi|240170588|ref|ZP_04749247.1| site-specific tyrosine recombinase XerC [Mycobacterium kansasii ATCC 12478] Length = 302 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 84/296 (28%), Positives = 137/296 (46%), Gaps = 12/296 (4%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L ++ G S T ++Y D R + AF + ++T LS +RA+++ + Sbjct: 16 LALQCGRSAHTRRAYLGDLR---LLFAFLADRGSALET---LSLPLLRAWLASASGAGVA 69 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 +L R S +K+F + +R + T ++ K +LP L + QAL + Sbjct: 70 RTTLARRTSAVKAFTAWAVRRGLLTGDPAARLQVPKAHRTLPAVLRQDQALAAM-TAAKS 128 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + + + R+ I+ LLY G+R+SE L ++ +R+ GKG+K R VP Sbjct: 129 GAEQGDPLALRDRLIVELLYATGIRVSELCGLDIDDVDTGHRVVRVLGKGNKQRTVPYGR 188 Query: 205 SVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 +A+ + D P + L G RG+ L+ + + Q + H Sbjct: 189 PAAEALQAWLADGRPALVTAESGPALLLGARGRRLDARQARTVVHQTVAAVNGAPDIGPH 248 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LRHS ATHLL G DLR +Q +LGH L+TTQ+YT+V + ++DQ HP Sbjct: 249 GLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVNR----LRAVHDQAHP 300 >gi|226306747|ref|YP_002766707.1| tyrosine recombinase XerD [Rhodococcus erythropolis PR4] gi|226185864|dbj|BAH33968.1| tyrosine recombinase XerD [Rhodococcus erythropolis PR4] Length = 307 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 89/316 (28%), Positives = 148/316 (46%), Gaps = 23/316 (7%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 L ++ ++L +L +ERG ++ TL SY D ++ +L + I + ++ ++ Sbjct: 2 LARQVDSYLDHLAVERGSARNTLLSYRRDLNRYAEYL-----DGRGIDDVAGVTENDVTE 56 Query: 74 FISKRRTQKIGDR----------SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 F++ R +GD+ S R+L ++ F K+ + ++ Sbjct: 57 FVTHLR---LGDKDAGVLPLAASSAARTLIAVRGFHKFSAAEGLVGVDVARTVKPPTPGR 113 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 LP+AL + L+D + + D R+ A+L LLY G RI+EA+ L +I Sbjct: 114 KLPKALPLDDVIALLDASGGGAAGDGPR-DLRDRALLELLYSTGARITEAIDLDVDDIDT 172 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 + ++ ++GKG K RIVP+ A+ Y L LF RG L+ Sbjct: 173 ETRSVLLKGKGGKQRIVPVGRPAIAAVDAYLVRGRPSLATRGVPALFLNARGGRLSRQSA 232 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + ++ G+ + HTLRHSFATHLL G D+R +Q +LGH ++TTQIYT V Sbjct: 233 WQILQDAAASAGIKADVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTV 292 Query: 304 KNGGDWMMEIYDQTHP 319 + E++ Q HP Sbjct: 293 TA----LREVWAQAHP 304 >gi|323527182|ref|YP_004229335.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1001] gi|323384184|gb|ADX56275.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1001] Length = 314 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 85/278 (30%), Positives = 134/278 (48%), Gaps = 13/278 (4%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E GLS+ TL +Y D R F +LA + ++ S ++ A+ + R QK Sbjct: 33 LWLEHGLSRNTLDAYRRDLRLFSEWLA-----QTRSASLDTASEADLNAYSAAR--QKDK 85 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S R LS + + + + L +R+ K+ P L+E Q L+ + Sbjct: 86 STSANRRLSVFRRYYGWAVREHRAKVDPTLRIRSAKQPPRFPSTLSEAQVEALLGAPDIE 145 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 T + R+ +L L+Y GLR++E ++L + ++ +R+ GKG K R++P Sbjct: 146 TP-----LGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVMGKGSKERLIPFGE 200 Query: 205 SVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 I Y D P L LF R + + F I++ G+ + H Sbjct: 201 EAHGWIERYLRDARPALLGARAADALFVTNRAEGMTRQQFWNIIKRHAAAAGVHAPLSPH 260 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 TLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V Sbjct: 261 TLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHV 298 >gi|308389967|gb|ADO32287.1| putative integrase/recombinase [Neisseria meningitidis alpha710] gi|325131510|gb|EGC54217.1| tyrosine recombinase XerC [Neisseria meningitidis M6190] gi|325139236|gb|EGC61782.1| tyrosine recombinase XerC [Neisseria meningitidis ES14902] Length = 305 Score = 115 bits (289), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 84/306 (27%), Positives = 147/306 (48%), Gaps = 13/306 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+N+ + G S+ T+ +Y D + LA E + LS + A + + Sbjct: 13 YLENI-VREGKSEHTVAAYRRDLEELFALLAQMPSEDAG-GVPQDLSRRDFTAALRRLSQ 70 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + R+L R LS + + +L +R + +++ K+ +P+AL ++ ++D Sbjct: 71 RGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQEWLNRMLDL 130 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + + R+ A+ L+YG GLR+SE L ++ D++ + + GKG K R V Sbjct: 131 PV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQV 186 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 PL +A+ Y P + LF G G L+ Q+ + Q G Sbjct: 187 PLTGKSVEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHV 243 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 + H +RHS+A HLL D+R++Q +LGH LSTTQIYT ++ D + +YD+ HP Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAHPR 299 Query: 321 ITQKDK 326 ++D+ Sbjct: 300 AKRQDE 305 >gi|289434561|ref|YP_003464433.1| integrase/recombinase XerC [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170805|emb|CBH27347.1| integrase/recombinase XerC [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 300 Score = 115 bits (289), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 88/309 (28%), Positives = 151/309 (48%), Gaps = 21/309 (6%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 K Q +L L ER S+ T +YE D F FL E+ IT Q+++ ++R ++ Sbjct: 6 KWEQLFLDYLHSERNYSENTSTAYENDLIDFRRFL---NEQAIT--EYNQVTFLDVRIYL 60 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 ++ + + ++ R +S ++SF +L + + TE+ + + K LP+ ++ Sbjct: 61 TELKQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEME 120 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L +++ +ET + R+ +L +LYG G+R+SE + +I + I+GKG+ Sbjct: 121 ALFQ--VVYEDNET--LTLRDRVLLEVLYGTGIRVSECAGILLTDIDKTYQAILIRGKGN 176 Query: 196 KIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 K R VP AI +Y D + F+ L G PL + + ++ Sbjct: 177 KERYVPFGAYAEDAITDYLDSRIELMKHFN---KTHDSLLINHYGDPLTTRGIRYCLTKI 233 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 L H LRH+FAT LL+NG D+R++Q +LGH LS+TQIYT+V ++ + Sbjct: 234 ISKASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH----L 289 Query: 311 MEIYDQTHP 319 Y + HP Sbjct: 290 KSTYMKHHP 298 >gi|296840755|ref|ZP_06863381.2| tyrosine recombinase XerC [Neisseria polysaccharea ATCC 43768] gi|296840030|gb|EFH23968.1| tyrosine recombinase XerC [Neisseria polysaccharea ATCC 43768] Length = 334 Score = 115 bits (289), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 84/306 (27%), Positives = 149/306 (48%), Gaps = 13/306 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+N+ + G S+ T+ +Y D + LA E + LS + A + + Sbjct: 42 YLENI-VREGKSEHTVAAYRRDLEELFALLAQMPSE-AEGGVPQDLSRRDFTAALRRLSQ 99 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + R+L R LS + + +L KR + +++ K+ +P+AL+++ ++D Sbjct: 100 RGLNARTLARKLSSWRQYCAWLVKRGLLHTDPTADIKPPKQPERVPKALSQEWLNRMLDL 159 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + + R+ A+ L+YG GLR+SE L ++ D++ + + GKG K R V Sbjct: 160 PV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNVDDVYLDEAWVHVTGKGRKQRQV 215 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 PL +A+ Y P + LF G G L+ Q+ + G Sbjct: 216 PLTGKSVEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLESWAVQNGDGRHI 272 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 + H +RHS+A+HLL + D+R++Q +LGH LSTTQIYT ++ D + +YD+ HP Sbjct: 273 SPHMMRHSYASHLLQSSRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAHPR 328 Query: 321 ITQKDK 326 ++D+ Sbjct: 329 AKRQDE 334 >gi|91215199|ref|ZP_01252171.1| putative site-specific recombinase [Psychroflexus torquis ATCC 700755] gi|91186804|gb|EAS73175.1| putative site-specific recombinase [Psychroflexus torquis ATCC 700755] Length = 296 Score = 115 bits (289), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 84/304 (27%), Positives = 155/304 (50%), Gaps = 23/304 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L+ L +E+ +KLT+ SY D QF +F+ E + + +++Y IR +I Sbjct: 6 SFLEYLLLEKKYAKLTIISYATDLAQFQVFIL----ETYDTREMSEVNYPMIRQWIVGFI 61 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + +++ R LS +K+F K+L K ++ + ++ ++LK LP+ E ++ ++ Sbjct: 62 ELGLTHKTINRKLSTLKTFFKFLLKIQVIAVNPMVQHKSLK----LPKRQQEAFSVLELE 117 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 V + + + R+ I+ LLY G+R E + L ++ Q L+++GK +K R+ Sbjct: 118 KVSDYFE-DVTFEGLRDHLIIELLYATGMRRQELIDLQLSSLDLKQQQLKVRGKRNKERL 176 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLG 255 +PLL S+ I Y ++ LP LF +GK + P + R + + Sbjct: 177 IPLLDSISFLIERYLQ------ERSVLLPQGSQLFVTSKGKAIYPNLVYRVVHSYFEKVS 230 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H LRH+FATHLL G D+ +I+ +LGH L++T++YT+ N K + + + Sbjct: 231 TKKKLSPHLLRHAFATHLLDKGADISAIKDLLGHSSLASTEVYTHSNFKE----LSKAHQ 286 Query: 316 QTHP 319 HP Sbjct: 287 AAHP 290 >gi|325201493|gb|ADY96947.1| tyrosine recombinase XerC [Neisseria meningitidis M01-240149] gi|325207473|gb|ADZ02925.1| tyrosine recombinase XerC [Neisseria meningitidis NZ-05/33] Length = 305 Score = 115 bits (289), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 87/308 (28%), Positives = 148/308 (48%), Gaps = 17/308 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI--TIQTIRQLSYTEIRAFISKR 78 +L+N+ + G S T+ +Y D + LA E Q + Q +T +S+R Sbjct: 13 YLENI-VREGKSGHTVAAYRRDLEELFALLAQMPSEDAGGVPQGLSQRDFTAALRRLSQR 71 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + R+L R LS + + +L KR + +++ K+ +P+AL ++ ++ Sbjct: 72 ---GLNARTLARKLSSWRQYCAWLVKRGLLHTDPTADIKPPKQPERVPKALPQEWLNRML 128 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + + R+ A+ L+YG GLR+SE L ++ D++ + + GKG K R Sbjct: 129 DLPV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQR 184 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VPL+ +A+ Y L + LF G G L+ Q+ + Q G Sbjct: 185 QVPLVGKSVEALKNYLSLRQTASDGKA---LFTGRNGTRLSQRQIQKRLAQWAAQNGDGR 241 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + H +RHS+A HLL D+R++Q +LGH LSTTQIYT ++ D + +YD+ H Sbjct: 242 HVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAH 297 Query: 319 PSITQKDK 326 P ++D+ Sbjct: 298 PRAKRQDE 305 >gi|269218465|ref|ZP_06162319.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 848 str. F0332] gi|269211576|gb|EEZ77916.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 848 str. F0332] Length = 255 Score = 115 bits (289), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 82/240 (34%), Positives = 123/240 (51%), Gaps = 20/240 (8%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S+ RS++ ++SF + + T + ++R K + LP+A++ +D+V + Sbjct: 25 SVARSMAAVRSFHAFAFEEGRTGANPAADVRPPKIPSRLPKAMD-------IDDVAALIA 77 Query: 147 HETKWIDA---RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 R+ A+L +LYG G RISEA+ L+ ++ ++ R+ GKG K R+VPL Sbjct: 78 AGGAGEGPAPLRDRALLEVLYGTGARISEAVGLSVDDVDLAGASARLFGKGRKERVVPLG 137 Query: 204 PSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 +AI Y L +L P LF RG+PL+ I+ L + Sbjct: 138 GYAVEAIDAY--LVRARPSLASSGPGTPSLFLNTRGRPLSRQSAWAIIQNAAERAKLSVH 195 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRHSFATHLL G D+R +Q +LGH LSTTQIYT V+ D + E+Y HP Sbjct: 196 VSPHTLRHSFATHLLQGGADIRVVQELLGHSSLSTTQIYTMVSR----DTVREVYALAHP 251 >gi|313669090|ref|YP_004049374.1| integrase/recombinase [Neisseria lactamica ST-640] gi|313006552|emb|CBN88016.1| putative integrase/recombinase [Neisseria lactamica 020-06] Length = 302 Score = 115 bits (289), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 84/306 (27%), Positives = 146/306 (47%), Gaps = 16/306 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+N+ + G S+ T+ +Y D + L + E + + LS + A + + Sbjct: 13 YLENI-VREGKSEHTVAAYRRDLEELLAQMPSEAEGGVP----QDLSRRDFTAALRRLSQ 67 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + R+L R LS + + +L KR + + K+ +P+AL ++ ++D Sbjct: 68 RGLNARTLARKLSSWRQYCAWLVKRGLMRADPTAGISPPKQPQRIPKALPQEWLNRMLDL 127 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + + R+ A+ L+YG GLR+SE L ++ D++ + + GKG K R V Sbjct: 128 PVDGGDP----LAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQV 183 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 PL +A+ Y P + LF G G L+ Q+ + Q G Sbjct: 184 PLTGKSAEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAINGDGRHV 240 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 + H +RHS+A HLL D+R++Q +LGH LSTTQIYT ++ D + +YD+ HP Sbjct: 241 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAHPR 296 Query: 321 ITQKDK 326 +++K Sbjct: 297 AKRQEK 302 >gi|312972864|ref|ZP_07787037.1| tyrosine recombinase XerD [Escherichia coli 1827-70] gi|310332806|gb|EFQ00020.1| tyrosine recombinase XerD [Escherichia coli 1827-70] Length = 283 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 88/294 (29%), Positives = 151/294 (51%), Gaps = 19/294 (6%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 + L++ TL +Y R + + + +T+ T + +++A +++R S Sbjct: 4 KNLAENTLNAYR---RDLSMMVEWLHHRGLTLATAQS---DDLQALLAERLEGGYKATSS 57 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 R LS ++ +YL + K + ++ + K LP+ L+E Q L+ L+ Sbjct: 58 ARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQP-- 115 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 ++ R+ A+L +LY GLR+SE + LT +I Q +R+ GKG+K R+VPL Sbjct: 116 ---LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 172 Query: 209 AILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTL 265 + Y + P+ LN ++I + LF R + + F I+ G+ + H L Sbjct: 173 WLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 231 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 RH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Q HP Sbjct: 232 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQHHP 281 >gi|313901872|ref|ZP_07835292.1| tyrosine recombinase XerD subunit [Thermaerobacter subterraneus DSM 13965] gi|313467865|gb|EFR63359.1| tyrosine recombinase XerD subunit [Thermaerobacter subterraneus DSM 13965] Length = 321 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 98/305 (32%), Positives = 145/305 (47%), Gaps = 20/305 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L+ L +ERGL+ TL +Y D F F A E + R L I A++ + Sbjct: 19 DYLEILRVERGLAAHTLAAYRRDLADFAAFAAARQVEPAGV--TRPL----ILAYLHQLE 72 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + R L+ ++ F +YL M + LPR L VD Sbjct: 73 RAGRSRATAARRLAALRGFFRYLASEGKVEHDPAEGMATPRGGRPLPRVLA-------VD 125 Query: 140 NV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 V +L R+ A+L LLY GLR+SE + L +++ D LR +GKG K Sbjct: 126 EVERVLELPQPASPAGLRDRAVLELLYATGLRVSELVGLDLDDLLLDHGLLRCRGKGGKE 185 Query: 198 RIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 R+VP+ +A +Y P Q LF RG L+ +R+ R G+ Sbjct: 186 RVVPVAAPAVEATRQYLARGRPALARRPGQRALFLNQRGGRLSRQWVWHLLRRAARRAGV 245 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 P + + HTLRHSFATHLL+ G DLR++Q +LGH +STTQIYT++ + ++E Y + Sbjct: 246 PRAVSPHTLRHSFATHLLAGGADLRAVQELLGHADISTTQIYTHLTRHH----LLEAYLR 301 Query: 317 THPSI 321 HP + Sbjct: 302 AHPRM 306 >gi|218194771|gb|EEC77198.1| hypothetical protein OsI_15703 [Oryza sativa Indica Group] Length = 752 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 82/301 (27%), Positives = 152/301 (50%), Gaps = 15/301 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 ++ L +E GLS+ TL +Y D + +L + + T + + ++A+ + R Sbjct: 463 FIDALWLEDGLSRNTLAAYRRDLVLYAQWLGQHASD--TAGALDATAEHHLKAYFAARHA 520 Query: 81 QKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + S R L+ ++ + ++ L++R+I + + ++ ++ +P+ L+ Q Sbjct: 521 ETRAT-SANRRLTVLRRYFQWALRERRIAADPTV-RLQAARQPLRVPKTLSAAQV----- 573 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 LL + + R+ A+L L+Y GLR++E ++L + + LR+ GKG K R+ Sbjct: 574 EALLQAPDTSTSLGLRDRAMLELMYASGLRVTELVTLKTYHAGLSEGVLRVMGKGGKERL 633 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VP + + Y D D+ Q LF RG + +F +++ + G+ + Sbjct: 634 VPFGEVAAQWMQRYLDEARADILAGQQTDDLFVTRRGAGMTRAMFWVVVKKHAQAAGITV 693 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + HTLRH+FATHLL++G DLR +Q +LGH +STT IYT+V + + ++ Q H Sbjct: 694 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARER----LKALHAQHH 749 Query: 319 P 319 P Sbjct: 750 P 750 >gi|116670082|ref|YP_831015.1| tyrosine recombinase XerD [Arthrobacter sp. FB24] gi|116610191|gb|ABK02915.1| tyrosine recombinase XerD [Arthrobacter sp. FB24] Length = 346 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 99/328 (30%), Positives = 150/328 (45%), Gaps = 58/328 (17%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS-YTEIRAFISKR 78 ++LQ++ +ERGL+ TL +Y D ++ +LA + T R ++ + + + S Sbjct: 45 DYLQHMGVERGLAANTLSAYRRDLARYANYLAACGPSRPGDVTRRHVTGFVQALSDGSDG 104 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 T +G RS R++ ++ K+ ITT ++ LP+A++ V Sbjct: 105 GT-ALGVRSAARTVVAVRGLHKFWALEGITTADPASDVHPPMPGKRLPKAIS-------V 156 Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQST---LRIQ 191 D V +L + R+ A+L LY G RISEA+ L +I DQ+ +R+ Sbjct: 157 DEVTRILEAAGTDTATGLRDRALLEFLYSTGARISEAVGLDVDDISLQADQAGPAIVRLF 216 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-------NPGVF- 243 GKG K R+VPL +A+ Y +RG+PL P +F Sbjct: 217 GKGSKERLVPLGSYGARALDAYL------------------VRGRPLLAAKGKGTPALFL 258 Query: 244 -QRYIRQLRRYLGLPLSTTA-----------HTLRHSFATHLLSNGGDLRSIQSILGHFR 291 R R R+ L A HTLRHSFATHLL G D+R +Q +LGH Sbjct: 259 NARGGRISRQSAWTILKAAADKANITKDVSPHTLRHSFATHLLEGGADVRVVQELLGHAS 318 Query: 292 LSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 ++TTQ+YT V + D + EIY HP Sbjct: 319 VTTTQVYTLVTA----DTLREIYAAAHP 342 >gi|332670384|ref|YP_004453392.1| integrase family protein [Cellulomonas fimi ATCC 484] gi|332339422|gb|AEE46005.1| integrase family protein [Cellulomonas fimi ATCC 484] Length = 322 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 87/305 (28%), Positives = 146/305 (47%), Gaps = 26/305 (8%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87 +RGLS+ TL +Y+ D +++ +L E I + +++ ++ F+ RT G R Sbjct: 28 DRGLSENTLLAYQRDLDRYVAYL-----ESIGRRAPDEIAGQDVEGFVDAVRTGSDGRRP 82 Query: 88 LKRS-----LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 L S ++ ++ + ++L + IT + +R + LPRA++ + V+ +L Sbjct: 83 LSESSAARLVAAVRGWHRFLARDGITVDDAARAVRPPAQPRRLPRAISVED----VERLL 138 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIV 200 + AR+ A+L LLY G RISE + L ++ + + +R+ G K R+ Sbjct: 139 DAAGRGEGPVPARDRALLELLYSTGARISEVVGLDLADLDRSERRPAVRLAVGGAKQRVS 198 Query: 201 PLLPSVRKAILEYYDLCPFDL----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 PL A+ EY L + + +L +F RG L+ +R L Sbjct: 199 PLGRRALSALTEYLTQARPALASGADRSDRLAVFLNTRGTRLSRQSAWAVLRSAAHRASL 258 Query: 257 PLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 P + + HTLRHSFATH+L+ G D+R +Q +LGH +STTQIY + + E Y Sbjct: 259 PDADVISPHTLRHSFATHMLARGADVRVVQELLGHASVSTTQIYATARDEA----LREAY 314 Query: 315 DQTHP 319 HP Sbjct: 315 TAAHP 319 >gi|326382897|ref|ZP_08204587.1| site-specific tyrosine recombinase XerC [Gordonia neofelifaecis NRRL B-59395] gi|326198487|gb|EGD55671.1| site-specific tyrosine recombinase XerC [Gordonia neofelifaecis NRRL B-59395] Length = 297 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 83/297 (27%), Positives = 138/297 (46%), Gaps = 13/297 (4%) Query: 24 NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83 +L E+G SK T+++Y D R + F E + L +RA++++ + Sbjct: 11 HLSFEKGHSKHTVRAYTGDIRGLVAFAGARGVE------VGDLDLPLLRAWLAEHARRGA 64 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 ++ R +S K+F + + + ++ K LP L +QA VD Sbjct: 65 ARTTIARQVSSAKTFCAWAVREGVLQTDPAQRLQAPKSHRVLPAVLAPEQAAAAVDGAAG 124 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 ++ + + R+ IL LLY CG+R+ E L ++ D+ +R+ GKGDK R VP Sbjct: 125 DSAGDGDPVAFRDRVILELLYSCGIRVGELCGLDLGDVDADRRVIRVIGKGDKQRSVPYG 184 Query: 204 PSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 A+ ++ L L G++G L+ + + + + G S Sbjct: 185 GPAAAALDDWLRRGRSALATAASGDALLLGVKGGRLDQRMARTVVHRATETAG--QSVGP 242 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHS ATHLL G DLR +Q +LGH L+TTQ+YT+V+ + + ++ Q HP Sbjct: 243 HALRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVSVER----LRAVHRQAHP 295 >gi|162329627|ref|YP_471302.2| site-specific tyrosine recombinase XerD [Rhizobium etli CFN 42] Length = 317 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 97/320 (30%), Positives = 152/320 (47%), Gaps = 26/320 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR--QLSYTEIRAFIS 76 +++L+ + ERG + TLQSYE D FL ++IR + + ++ A+++ Sbjct: 10 ESFLEMMSAERGAAANTLQSYERDLDDVRSFL--------NGRSIRLTEAASADLAAYLA 61 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 Q S R L+ ++ F K+L + T+ + KK LP+ + ++ Sbjct: 62 SLARQGFKPSSQARRLAAMRQFYKFLYAEGLRTDDPTGVLDAPKKGRPLPKTMGVEEVGR 121 Query: 137 LVDNVLLHTSHETKWIDARNS--AILYLLYGCGLRISEALSLTPQNIMDDQST-LRIQGK 193 L+ R A+L LLY G+R+SE +SL P ++D + L I+GK Sbjct: 122 LLSQAQTEADDPAPGQLQRRRMLALLELLYATGMRVSELVSL-PARVLDQEGRFLMIRGK 180 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNP-GVFQRYI 247 G+K R+VPL S A+ Y L + P LF + P VF R + Sbjct: 181 GNKERLVPLSHSAIAALKSYGRLL-AADAAAAKEPQESPWLFPAASKEGYLPRQVFARDL 239 Query: 248 RQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 + L GL P + H +RH+FA+HLL+NG DLR +Q +LGH +STTQIYT+V + Sbjct: 240 KNLAIRAGLTPSLISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER- 298 Query: 307 GDWMMEIYDQTHPSITQKDK 326 + ++ HP Q K Sbjct: 299 ---LQQLVQMHHPLAKQAKK 315 >gi|152981084|ref|YP_001352164.1| integrase/recombinase [Janthinobacterium sp. Marseille] gi|151281161|gb|ABR89571.1| integrase/recombinase [Janthinobacterium sp. Marseille] Length = 301 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 86/286 (30%), Positives = 140/286 (48%), Gaps = 12/286 (4%) Query: 17 ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 E + L +E GL+K +L++Y D R F +L + + L+ F + Sbjct: 11 EIDEFCDTLWLEDGLAKNSLEAYRRDLRLFATWLQQERGKSLLAAHTEDLNGY----FFA 66 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 K T K S R L+ +K F + ++ + L +R+ K+ +P+ L+E Q Sbjct: 67 KHATTKA--TSSNRRLAVLKRFYQLALRQNKIKDDPCLRLRSAKQPPRMPKTLSEAQVEA 124 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L+ ++T + R+ +L L+Y GLR++E + L + ++ LR+ GKG K Sbjct: 125 LLAAPDVNTP-----LGLRDRTMLELMYASGLRVTELVLLKSVEVGMNEGVLRVTGKGGK 179 Query: 197 IRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 R++P R I Y + LN + LF RG + +F I++ Sbjct: 180 TRLIPFGEEARAWIERYLKEARGAILNGQMDDALFVTARGGAMTRQMFWTLIKKHAAAAD 239 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + + HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V Sbjct: 240 INAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 285 >gi|255037676|ref|YP_003088297.1| integrase family protein [Dyadobacter fermentans DSM 18053] gi|254950432|gb|ACT95132.1| integrase family protein [Dyadobacter fermentans DSM 18053] Length = 290 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 84/301 (27%), Positives = 149/301 (49%), Gaps = 19/301 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE--EKITIQTIRQLSYTEIRAFISKR 78 +L+ L+ E+ S T++SY+ D QF +L F E E T + +R+++ Sbjct: 5 FLEFLQFEKRASAHTIKSYQTDLEQFQKYLLFQYECNEPETAKA------PMLRSWVVSM 58 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + S+ R ++ +++F YL+K+K + LK LP + EK L Sbjct: 59 MEEGLNPSSINRKIAALRTFYGYLRKKKHIDSDPTKILSALKTRKKLPAFVEEKSMELLF 118 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + + + R+ I+ LLYG G+R+SE + L +++ T+R+ GK K R Sbjct: 119 EEGVFSED----FSGLRDRVIMELLYGSGIRLSELVELELKDLNLPARTIRVFGKRAKER 174 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 IVP+ S+ + + +Y + + + ++ L K + P QR ++Q + Sbjct: 175 IVPVSTSLAQLLHKYTEQRAPEEDTDV---LLLTDSNKAIYPVFVQRKVKQYLSAVTTLS 231 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + H LRH++ATHLL+ G DL +I+ +LGH L+ TQIYT+ N + + + + Q H Sbjct: 232 QKSPHVLRHTYATHLLNRGADLNAIKELLGHANLAATQIYTH----NSIEKLKKTHQQAH 287 Query: 319 P 319 P Sbjct: 288 P 288 >gi|121998438|ref|YP_001003225.1| tyrosine recombinase XerD [Halorhodospira halophila SL1] gi|121589843|gb|ABM62423.1| tyrosine recombinase XerD [Halorhodospira halophila SL1] Length = 254 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 76/251 (30%), Positives = 125/251 (49%), Gaps = 10/251 (3%) Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 ++ A++++R R+ R LS ++ F + L ++ + + LP AL Sbjct: 11 DVFAYLAERVAAGARPRTTARLLSSLRRFYRRLVSTGERSDDPTAEVEAPRLGQPLPGAL 70 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 E+Q LL + R+ +L +LY GLR+SE ++L + Q +R Sbjct: 71 TERQV-----EALLAAPDTGDPLGLRDRCLLEVLYATGLRVSELVALRVDGVSLRQGVVR 125 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 + GKGD+ R+VPL + Y + + P L+ LF RG+ L F ++ Sbjct: 126 VIGKGDRERLVPLGEEAVDWVRRYLEEVRPLLLDGRAAEALFVTRRGEGLTRQAFWYRVK 185 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 + G+ + + HTLRHSFATHL+++G DLR +Q +LGH LSTTQIYT+V + Sbjct: 186 RYAAAAGIDPAISPHTLRHSFATHLINHGADLRVVQMLLGHADLSTTQIYTHVARQR--- 242 Query: 309 WMMEIYDQTHP 319 + +++ HP Sbjct: 243 -LQQLHAAHHP 252 >gi|269792953|ref|YP_003317857.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100588|gb|ACZ19575.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 292 Score = 115 bits (288), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 85/300 (28%), Positives = 137/300 (45%), Gaps = 24/300 (8%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 G S+ T+ +Y D QF +L E+ + ++ ++ +R F+ S Sbjct: 13 GRSEHTVINYGVDLGQFAEYL-----EQAEVHRVQDITRDHVRGFLRSLVGYGFAKASAL 67 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 R +S I+ F+ YL+ + ++ + S LPRA++ L++ S Sbjct: 68 RKMSSIRGFMGYLRDIGVIERDPSEGVKGPRSSPGLPRAISYPDVCRLLEE---GPSGRE 124 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 + R+ ++ LLYG GLR+SE L ++ ++ +R+ GKG K R+VP V+ Sbjct: 125 AF---RDRLVMELLYGSGLRVSELCDLDWDDVDVEERWIRVMGKGSKGRMVPFGSIVQDM 181 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 + + ++ + PLF G RG L R + R +GL + HTLRHS Sbjct: 182 LRRWGEM------VGRAGPLFPGKRGAERLTQRTVHRIVSGCARRVGL-FGVSPHTLRHS 234 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328 FATHLL G LR +Q ++GH L TTQ Y +V ++ M Q H DK + Sbjct: 235 FATHLLEGGASLRVVQELMGHESLVTTQRYLDVTAER-----MRFSYQVHHPRAGGDKSH 289 >gi|16803317|ref|NP_464802.1| hypothetical protein lmo1277 [Listeria monocytogenes EGD-e] gi|224499052|ref|ZP_03667401.1| hypothetical protein LmonF1_04845 [Listeria monocytogenes Finland 1988] gi|224501778|ref|ZP_03670085.1| hypothetical protein LmonFR_04567 [Listeria monocytogenes FSL R2-561] gi|254829966|ref|ZP_05234621.1| hypothetical protein Lmon1_01355 [Listeria monocytogenes 10403S] gi|255016911|ref|ZP_05289037.1| hypothetical protein LmonF_02001 [Listeria monocytogenes FSL F2-515] gi|284801662|ref|YP_003413527.1| hypothetical protein LM5578_1415 [Listeria monocytogenes 08-5578] gi|284994804|ref|YP_003416572.1| hypothetical protein LM5923_1368 [Listeria monocytogenes 08-5923] gi|34222941|sp|Q8Y7K0|XERC_LISMO RecName: Full=Tyrosine recombinase xerC gi|16410693|emb|CAC99355.1| codV [Listeria monocytogenes EGD-e] gi|284057224|gb|ADB68165.1| hypothetical protein LM5578_1415 [Listeria monocytogenes 08-5578] gi|284060271|gb|ADB71210.1| hypothetical protein LM5923_1368 [Listeria monocytogenes 08-5923] Length = 300 Score = 115 bits (288), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 86/309 (27%), Positives = 148/309 (47%), Gaps = 21/309 (6%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 K Q + L ER S T +YE D L F F E+ IT T +Q+++ ++R ++ Sbjct: 6 KLEQQFFDYLHSERNYSVNTSTAYEND---LLDFRRFLNEQAIT--TYQQVTFLDVRIYL 60 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 ++ + + ++ R +S ++SF +L + + E+ + + K LP+ ++ Sbjct: 61 TELKQKSFSRTTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEME 120 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L V + + + R+ +L +LYG G+R+SE + ++ + I+GKG+ Sbjct: 121 ALFQVVY----EDNETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGN 176 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPLNPGVFQRYIRQL 250 K R VP AI +Y P +NL + L G PL + + ++ Sbjct: 177 KERYVPFGAYAEDAITDY---LPERVNLMSRYKKSHDALLVNHYGDPLTTRGIRYCLTKI 233 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 L H LRH+FAT LL+NG D+R++Q +LGH LS+TQIYT+V ++ + Sbjct: 234 ISKASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH----L 289 Query: 311 MEIYDQTHP 319 Y + HP Sbjct: 290 KSTYMKHHP 298 >gi|329946754|ref|ZP_08294166.1| site-specific recombinase, phage integrase family [Actinomyces sp. oral taxon 170 str. F0386] gi|328526565|gb|EGF53578.1| site-specific recombinase, phage integrase family [Actinomyces sp. oral taxon 170 str. F0386] Length = 264 Score = 115 bits (288), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 83/268 (30%), Positives = 133/268 (49%), Gaps = 22/268 (8%) Query: 66 LSYTEIRAFISKRRTQKIGDRSLK-----RSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 +S ++ F+ RT G R L R+++ ++ + K+L T++ +R + Sbjct: 1 MSRNDVTGFLEALRTGADGARPLASSSASRTVTAVRGWHKFLLAEGTTSQDPSATVRPPQ 60 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 LP+AL+ ++ V +L S + + R+ A+L +LY G RISEA+ L + Sbjct: 61 PGRRLPKALSIEE----VRRLLEAASIDDSPVSLRDRALLEVLYATGARISEAVGLVVDD 116 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLP-LFRGIRGKPL 238 + D LR+ GKG K R+VP+ +A+ Y P +P +F G+PL Sbjct: 117 LDADSRLLRLFGKGRKERVVPMGTYAWEALDAYLVRGRPALAEKGRGVPQVFLNTLGRPL 176 Query: 239 NPGVFQRYIRQLRRYLGLPLSTTA-------HTLRHSFATHLLSNGGDLRSIQSILGHFR 291 + ++Q GL + + HTLRHSFATHLL+ G D+R +Q +LGH Sbjct: 177 SRQSAWAVLQQAAERAGLTGAGASTERHISPHTLRHSFATHLLAGGADVRVVQEMLGHAS 236 Query: 292 LSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 ++TTQIYT V D + E+Y +HP Sbjct: 237 VTTTQIYTKVTV----DHLREVYATSHP 260 >gi|251810683|ref|ZP_04825156.1| tyrosine recombinase XerC [Staphylococcus epidermidis BCM-HMP0060] gi|293366784|ref|ZP_06613460.1| tyrosine recombinase XerC [Staphylococcus epidermidis M23864:W2(grey)] gi|251805843|gb|EES58500.1| tyrosine recombinase XerC [Staphylococcus epidermidis BCM-HMP0060] gi|291319085|gb|EFE59455.1| tyrosine recombinase XerC [Staphylococcus epidermidis M23864:W2(grey)] Length = 286 Score = 115 bits (288), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 91/303 (30%), Positives = 163/303 (53%), Gaps = 32/303 (10%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L++ER S+ TL+SY D QF FL E + ++T Y + R +++ + ++ Sbjct: 2 LKVERNFSEYTLKSYHDDLVQFNNFLE---REHLQLET---FEYKDARNYLAFLYSNQLK 55 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSLPRALNEKQALTLVDN 140 ++ R +S +++F ++ +T +++I+N + + KK LP+ E++ L Sbjct: 56 RTTVSRKISTLRTFYEFW----MTQDNSIINPFVQLVHPKKEKYLPQFFYEEEMEALFQT 111 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 V H+ K R+ I+ LLY G+R+SE +++ ++I + +++ GKG+K R + Sbjct: 112 V----EHDNKK-GIRDKVIIELLYATGIRVSELINIKLKDIDMNLPGVKVLGKGNKERFI 166 Query: 201 PLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQ--LRRYLGL 256 P R++I Y + P L + L + ++G P+ GV RY+ ++R G+ Sbjct: 167 PFGEFCRQSIERYLEEFQPKQLANHDYLIV--NMKGDPITERGV--RYVLNDVVKRTAGV 222 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++ + ++Y Sbjct: 223 N-DIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQ----LRKVYLN 277 Query: 317 THP 319 HP Sbjct: 278 AHP 280 >gi|183600284|ref|ZP_02961777.1| hypothetical protein PROSTU_03843 [Providencia stuartii ATCC 25827] gi|188020074|gb|EDU58114.1| hypothetical protein PROSTU_03843 [Providencia stuartii ATCC 25827] Length = 309 Score = 115 bits (288), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 93/311 (29%), Positives = 157/311 (50%), Gaps = 26/311 (8%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 L+ + + +L+ L+IER LS +T+ +Y RQ + + E + + RQL T+ R Sbjct: 13 LMIQVEAFLRYLQIERRLSPVTITNYR---RQLTVVVEMLNE--MNVSEWRQLDATKARN 67 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 +K R + + S+ LS ++SF ++ ++ + + + + K LP+ ++ Sbjct: 68 VAAKSRRKGLQAASMALRLSALRSFCDWMVQQDKLSANPVTAVHAPKAKKRLPKNMD--- 124 Query: 134 ALTLVDNVLLHTSHET-KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 VD V S E+ + R+ +L ++YG GLR+SE + L +++ +R+ G Sbjct: 125 ----VDEVSKLLSMESGDPLVVRDRTMLEVMYGAGLRLSELVGLDVRHLDLAMGEVRVMG 180 Query: 193 KGDKIRIVPL---LPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 KG K R +PL S K LE +L P D + I + I + + Q I+ Sbjct: 181 KGSKERKIPLGKTAVSWLKRWLEMRELYEPEDGAVFISTKSGKRISNRNVQKRFEQWGIK 240 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 Q G+ H LRHSFATH+L + G+LR +Q +LGH LSTTQIYT+++ ++ Sbjct: 241 Q-----GVNSHINPHKLRHSFATHILESSGNLRGVQELLGHANLSTTQIYTHLDFQH--- 292 Query: 309 WMMEIYDQTHP 319 + +YD HP Sbjct: 293 -LANVYDVAHP 302 >gi|300714802|ref|YP_003739605.1| Tyrosine recombinase XerC [Erwinia billingiae Eb661] gi|299060638|emb|CAX57745.1| Tyrosine recombinase XerC [Erwinia billingiae Eb661] Length = 302 Score = 115 bits (288), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 85/305 (27%), Positives = 151/305 (49%), Gaps = 25/305 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ L++ER LS LT +Y+ RQ LA TE K+T +L ++R+ ++ Sbjct: 12 EGFLRYLKVERQLSPLTQINYQ---RQLAACLALLTEMKLT--AWDKLDAAQVRSLAARS 66 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + SL LS ++SFL + + + + + + LP+ ++ + L+ Sbjct: 67 RRGGLKPASLALRLSALRSFLDWQISQGVLKANPAKGVATPRAPRHLPKNIDVDEVSQLL 126 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D L + R+ A+L ++YG GLR+SE + + ++ + + GKG K R Sbjct: 127 DIDL------NDPLAVRDRAMLEIMYGAGLRLSELVGIDTGHLDLASGEVWVVGKGSKER 180 Query: 199 IVPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 +P+ + + + + ++ P D + F GK ++ Q+ + Sbjct: 181 RLPIGRTAVQWMEHWLEMRELFAPEDQAV------FLSKYGKRMSARNVQKRFAEWGAKQ 234 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ H LRHSFATH+L + GDLR++Q +LGH LSTTQIYT+++ ++ + +Y Sbjct: 235 GVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LASVY 290 Query: 315 DQTHP 319 D HP Sbjct: 291 DAAHP 295 >gi|258405471|ref|YP_003198213.1| tyrosine recombinase XerD [Desulfohalobium retbaense DSM 5692] gi|257797698|gb|ACV68635.1| tyrosine recombinase XerD [Desulfohalobium retbaense DSM 5692] Length = 306 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 79/286 (27%), Positives = 145/286 (50%), Gaps = 12/286 (4%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 + ++++L + +GL+ ++ +Y D F+ FL E+K +++ F+ Sbjct: 15 KDAYVEHLLVIKGLADPSVAAYVQDIEMFIQFL----EQKG--ESVATCDANAFLYFLLH 68 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 +++ + +R++ R LS ++ F ++L+ + ++ K + LP L+ ++ Sbjct: 69 LKSRGLTNRTIARHLSSLRGFFQFLQTSNRRVDDPTAHVDGPKLTRQLPEFLDVQE---- 124 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 + +L TK + R+ IL LLY GLR+SE + L +I +R+ GKG K Sbjct: 125 MQGLLAQPDTGTK-LGFRDRTILELLYAAGLRVSEVIRLQALDIDSQTGVVRVWGKGAKE 183 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 R+VPL P+ + Y ++ LF G+ L+ + +++ G+ Sbjct: 184 RLVPLHPAALDYVRTYVQAWRPQFAPQHKV-LFLNRSGRCLSRQAVWKNVKRYAVAAGIR 242 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 S + HT+RHSFATHLL G DLR++Q +LGH +S T+IYT+V + Sbjct: 243 RSISPHTIRHSFATHLLEGGADLRTVQLLLGHADISATEIYTHVQA 288 >gi|47097538|ref|ZP_00235075.1| integrase/recombinase XerC [Listeria monocytogenes str. 1/2a F6854] gi|254828640|ref|ZP_05233327.1| integrase/recombinase XerC [Listeria monocytogenes FSL N3-165] gi|254898558|ref|ZP_05258482.1| hypothetical protein LmonJ_02045 [Listeria monocytogenes J0161] gi|254911951|ref|ZP_05261963.1| integrase/recombinase XerC [Listeria monocytogenes J2818] gi|254936278|ref|ZP_05267975.1| integrase/recombinase XerC [Listeria monocytogenes F6900] gi|47014086|gb|EAL05082.1| integrase/recombinase XerC [Listeria monocytogenes str. 1/2a F6854] gi|258601039|gb|EEW14364.1| integrase/recombinase XerC [Listeria monocytogenes FSL N3-165] gi|258608867|gb|EEW21475.1| integrase/recombinase XerC [Listeria monocytogenes F6900] gi|293589913|gb|EFF98247.1| integrase/recombinase XerC [Listeria monocytogenes J2818] Length = 300 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 85/306 (27%), Positives = 147/306 (48%), Gaps = 21/306 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q + L ER S T +YE D L F F E+ IT T +Q+++ ++R ++++ Sbjct: 9 QQFFDYLHSERNYSVNTSTAYEND---LLDFRRFLNEQAIT--TYQQVTFLDVRIYLTEL 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + ++ R +S ++SF +L + + E+ + + K LP+ ++ L Sbjct: 64 KQKSFSRTTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEMEALF 123 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 V + + + R+ +L +LYG G+R+SE + ++ + I+GKG+K R Sbjct: 124 QVVY----EDNETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGNKER 179 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPLNPGVFQRYIRQLRRY 253 VP AI +Y P +NL + L G PL + + ++ Sbjct: 180 YVPFGAYAEDAITDY---LPERVNLMSRYKKSHDALLVNHYGDPLTTRGIRYCLTKIISK 236 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 L H LRH+FAT LL+NG D+R++Q +LGH LS+TQIYT+V ++ + Sbjct: 237 ASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH----LKST 292 Query: 314 YDQTHP 319 Y + HP Sbjct: 293 YMKHHP 298 >gi|283781943|ref|YP_003372698.1| integrase family protein [Pirellula staleyi DSM 6068] gi|283440396|gb|ADB18838.1| integrase family protein [Pirellula staleyi DSM 6068] Length = 314 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 89/305 (29%), Positives = 149/305 (48%), Gaps = 21/305 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++++ L E L+K ++ +Y+ D +F +L K+T++ + T+ AF+ Sbjct: 25 RSFIEYLRTECHLAKNSVAAYQRDMTRFCRWLGDRFIPKLTVRDL-----TDYLAFM--- 76 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + + +S+ R + +K FL+YL+ I ++ + K + ++P L+ A L+ Sbjct: 77 REENLDPKSIARHVVTLKLFLRYLQLEGIIKDNPAELLGTTKTAATIPDVLSPTVAARLL 136 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + R+ A+L LLY G R SE + +++ + +GKG K R Sbjct: 137 D-----APQPYDPLFRRDRALLELLYATGCRASEVSVMEVRDLRIEDRFCLARGKGSKER 191 Query: 199 IVPLLPSVRKAILEY--YDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYL 254 +VPL A+ Y ++ +P L RG+ L ++Q Sbjct: 192 LVPLGDPALAAVEAYLEHERPKLAAKSKQGVPPWLLLSSRGQRLTRQKIWELVKQYALRC 251 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G P S + HTLRHSFATHLLS G DLR +Q +LGH + TTQIYT+V+ + +I+ Sbjct: 252 GAPASMSPHTLRHSFATHLLSGGADLRQVQELLGHASIGTTQIYTHVDQSR----LKKIH 307 Query: 315 DQTHP 319 Q HP Sbjct: 308 SQFHP 312 >gi|117625125|ref|YP_854113.1| site-specific tyrosine recombinase XerD [Escherichia coli APEC O1] gi|115514249|gb|ABJ02324.1| site-specific tyrosine recombinase XerD [Escherichia coli APEC O1] Length = 264 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 13/253 (5%) Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 +++A +++R S R LS ++ +YL + K + ++ + K LP+ L Sbjct: 20 DLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDL 79 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 +E Q L+ L+ ++ R+ A+L +LY GLR+SE + LT +I Q +R Sbjct: 80 SEAQVERLLQAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVR 134 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYI 247 + GKG+K R+VPL + Y + P+ LN ++I + LF R + + F I Sbjct: 135 VIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRI 193 Query: 248 RQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 + G+ + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ Sbjct: 194 KHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER- 252 Query: 307 GDWMMEIYDQTHP 319 + +++ Q HP Sbjct: 253 ---LRQLHQQHHP 262 >gi|242242534|ref|ZP_04796979.1| tyrosine recombinase XerC [Staphylococcus epidermidis W23144] gi|242233961|gb|EES36273.1| tyrosine recombinase XerC [Staphylococcus epidermidis W23144] Length = 286 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 88/299 (29%), Positives = 159/299 (53%), Gaps = 24/299 (8%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L++ER S+ TL+SY D QF FL E + ++T Y + R +++ + ++ Sbjct: 2 LKVERNFSEYTLKSYHDDLVQFNNFLE---REHLQLET---FEYKDARNYLAFLYSNQLK 55 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 ++ R +S +++F ++ + + + + + + KK LP+ E++ L V Sbjct: 56 RTTVSRKISTLRTFYEFWMTQNNSIINPFVQLVHPKKEKYLPQFFYEEEMEALFQTV--- 112 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 H+ K R+ I+ LLY G+R+SE +++ ++I + +++ GKG+K R +P Sbjct: 113 -EHDNKK-GIRDKVIIELLYATGIRVSELINIKLKDIDMNLPGVKVLGKGNKERFIPFGE 170 Query: 205 SVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQ--LRRYLGLPLST 260 R++I Y + P L + L + ++G P+ GV RY+ ++R G+ Sbjct: 171 FCRQSIERYLEEFQPKQLANHDYLIV--NMKGDPITERGV--RYVLNDVVKRTAGVN-DI 225 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++ + ++Y HP Sbjct: 226 HPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQ----LRKVYLNAHP 280 >gi|300114666|ref|YP_003761241.1| tyrosine recombinase XerD [Nitrosococcus watsonii C-113] gi|299540603|gb|ADJ28920.1| tyrosine recombinase XerD [Nitrosococcus watsonii C-113] Length = 305 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 93/302 (30%), Positives = 154/302 (50%), Gaps = 16/302 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +E GL++ TL +Y D F +L ++ + I+ R+ ++ A+++ R Sbjct: 17 ERFLDTLWLEEGLAENTLAAYRRDLEGFSRWLD--SQGRALIRAQRE----DVLAYLAHR 70 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 RS+ RS+S ++ F +YL + KI + + LP +L+E + Sbjct: 71 LEGGGKSRSVARSVSSLRRFYRYLMREKIRDSDPSDRVELPRLGRLLPESLSEGEV---- 126 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL + R+ +L LY GLR+SE ++LT + Q +R+ GKG+K R Sbjct: 127 -EALLAAPKTNDSLGLRDRTMLETLYATGLRVSELVNLTLSQLNSRQGVVRLSGKGNKER 185 Query: 199 IVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL + Y ++ P + + LF RG ++ F I++ R G+ Sbjct: 186 LVPLGEVALSWLDRYCHEARPGLVRGQLNEILFLTRRGGAMSRQAFWYLIKRYARQSGIQ 245 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + +++ Q Sbjct: 246 KTLSPHTLRHAFATHLLNHGADLRVVQILLGHADLSTTQIYTHVARAR----LQQLHQQH 301 Query: 318 HP 319 HP Sbjct: 302 HP 303 >gi|294828085|ref|NP_712528.2| integrase/recombinase XerD [Leptospira interrogans serovar Lai str. 56601] gi|302393797|sp|Q7ZAM8|XERC_LEPIN RecName: Full=Tyrosine recombinase xerC gi|302393800|sp|Q72RY9|XERC_LEPIC RecName: Full=Tyrosine recombinase xerC gi|293385933|gb|AAN49546.2| integrase/recombinase XerD [Leptospira interrogans serovar Lai str. 56601] Length = 311 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 87/320 (27%), Positives = 158/320 (49%), Gaps = 26/320 (8%) Query: 6 LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65 PE S L + + ++ L+IE+ S+ T+ +Y D + F F +E++ I I Sbjct: 8 FPEFSSESLNETAKKFINYLKIEKNYSQNTINAYSIDLK---FFFEFCEKEQLDIFQIEP 64 Query: 66 LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 + A+++K+ +I RS R LS +++F K L + + + + K + Sbjct: 65 VDIRSYFAYLAKK--HEIDRRSQSRKLSSLRTFYKVLLREDLVKSNPATQLSFPKVRKEV 122 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 P+ + +++ + + ++ + R+ A++ +LY GLR+ E ++ ++ D Sbjct: 123 PKNFRINETEEILE---FESENASEVSEIRDRAMIEVLYSSGLRVFELVNAKLNSLSKDL 179 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNP- 240 + L++ GKG K R V ++ +Y + N+ P +F RGK L Sbjct: 180 TVLKVLGKGRKERFVYFGKEAVSSLQKYLEY------RNVSFPDAEEIFLNQRGKKLTTR 233 Query: 241 GVFQRYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 GV RYI + R+ +G + T H RH+FAT LL G ++R++Q +LGH LSTTQIY Sbjct: 234 GV--RYILNERRKKMGWEKTITPHKFRHTFATDLLDAGAEIRAVQELLGHSSLSTTQIYL 291 Query: 300 NVNSKNGGDWMMEIYDQTHP 319 +V+ + + E+Y + HP Sbjct: 292 SVSKEK----IKEVYRKAHP 307 >gi|316931928|ref|YP_004106910.1| tyrosine recombinase XerD [Rhodopseudomonas palustris DX-1] gi|315599642|gb|ADU42177.1| tyrosine recombinase XerD [Rhodopseudomonas palustris DX-1] Length = 327 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 88/295 (29%), Positives = 140/295 (47%), Gaps = 26/295 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L + E+G S TL +Y D FL + +++I +R +++ Sbjct: 26 FLDMIAAEQGASANTLDAYRRDLADLSHFL---SRRRLSIGAA---DTAALRGYLADLDK 79 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + S+ R LS ++ ++L +I + + K+ SLP+ L+ + VD Sbjct: 80 RGFATSSVARRLSALRHLFRFLLSERIRADDPAAILAGPKRGRSLPKVLS----IADVDR 135 Query: 141 VLLHTSHETKWID-------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 +L E + AR + +L +LY GLR+SE ++L D + ++GK Sbjct: 136 LLACARQEADAAEGAARLRAARLNCLLEVLYATGLRVSELMALPLSAARRDARIIVVRGK 195 Query: 194 GDKIRIVPLLPSVRKAILEYYDLC------PFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 GDK R+VPL ++A+ Y + P + P F G G L F R + Sbjct: 196 GDKERLVPLNAGAKQAMARYLEEVAAVAKDPKGASSKWLFPSF-GDSGH-LTRQHFARDL 253 Query: 248 RQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + L GL P + H LRH+FA+HLL NG DLR +Q++LGH +STTQIYT+V Sbjct: 254 KDLAARAGLSPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHV 308 >gi|262184376|ref|ZP_06043797.1| site-specific tyrosine recombinase XerC [Corynebacterium aurimucosum ATCC 700975] Length = 292 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 84/306 (27%), Positives = 153/306 (50%), Gaps = 30/306 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTR----QFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 +++ + I RG S+ T++ Y D R + F AF T+ ++R+ + Sbjct: 10 EDFAEYQRIVRGRSEATVRGYCSDLRLLAPEVPEFAAF------TLNSLRE--------W 55 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQ 133 ++ + +L R + +++F + R+ ES++ + K LP ++ Sbjct: 56 LAHAVAEGKSRSTLARRTAAVRAFSTW-AAREGYLESDVAQRLATPKVGKHLPTVMSPTA 114 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 A L+ N + ++ E ++ R+SA+L LY G+R++E + L +I + T R+ GK Sbjct: 115 AGELMGNAV--STDEVHFL--RDSAMLEFLYATGVRVAELVGLDVGDIDLSRRTARVTGK 170 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 G+K R+VP + A+ + +L + +F G RG ++ +R + + + Sbjct: 171 GNKQRVVPFGDAAHDALCAWLKTGRPELAGETE-AVFVGTRGGRIDARQVRRVVERAAQV 229 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G P T H LRHS ATHLL G DLR +Q +LGH L TTQ+YT+V+++ + ++ Sbjct: 230 TGAP-GLTPHGLRHSAATHLLEGGADLRIVQELLGHSSLQTTQVYTHVSAQR----LKDV 284 Query: 314 YDQTHP 319 Y ++HP Sbjct: 285 YARSHP 290 >gi|218131523|ref|ZP_03460327.1| hypothetical protein BACEGG_03142 [Bacteroides eggerthii DSM 20697] gi|217986455|gb|EEC52792.1| hypothetical protein BACEGG_03142 [Bacteroides eggerthii DSM 20697] Length = 316 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 85/286 (29%), Positives = 144/286 (50%), Gaps = 14/286 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + Q L++E+ L+ T +Y D ++ L FL E I + + + +++ F + Sbjct: 18 RKYQQYLKLEKSLASNTFDAYMTDLQKLLHFLE---GENIEVGNV---TPDDLQRFAAGL 71 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 I RS R LSGIKSF +L + K +P L ++ + Sbjct: 72 HDIGIHPRSQARILSGIKSFFHFLTVADYLETDPSELLEGPKIGFKIPEVLTVEE----I 127 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D ++ + K RN AIL LY CGLR+SE +L ++ ++ ++++GKG K R Sbjct: 128 DRIISAVDMDKKE-GQRNRAILETLYSCGLRVSELCNLKLSDLYFEEGFIKVEGKGSKQR 186 Query: 199 IVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VP+ P K I +Y+ D + + +F G ++ + I++L G+ Sbjct: 187 LVPISPRAIKEI-KYWLTDRNLGKIKKGYEDYVFLARWGNNISRIMVFHMIKELAEKTGI 245 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ Sbjct: 246 TKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHID 291 >gi|45657471|ref|YP_001557.1| putative integrase/recombinase protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600710|gb|AAS70194.1| putative integrase/recombinase protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 332 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 87/320 (27%), Positives = 158/320 (49%), Gaps = 26/320 (8%) Query: 6 LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65 PE S L + + ++ L+IE+ S+ T+ +Y D + F F +E++ I I Sbjct: 29 FPEFSSESLNETAKKFINYLKIEKNYSQNTINAYSIDLK---FFFEFCEKEQLDIFQIEP 85 Query: 66 LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 + A+++K+ +I RS R LS +++F K L + + + + K + Sbjct: 86 VDIRSYFAYLAKK--HEIDRRSQSRKLSSLRTFYKVLLREDLVKSNPATQLSFPKVRKEV 143 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 P+ + +++ + + ++ + R+ A++ +LY GLR+ E ++ ++ D Sbjct: 144 PKNFRINETEEILE---FESENASEVSEIRDRAMIEVLYSSGLRVFELVNAKLNSLSKDL 200 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNP- 240 + L++ GKG K R V ++ +Y + N+ P +F RGK L Sbjct: 201 TVLKVLGKGRKERFVYFGKEAVSSLQKYLEYR------NVSFPDAEEIFLNQRGKKLTTR 254 Query: 241 GVFQRYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 GV RYI + R+ +G + T H RH+FAT LL G ++R++Q +LGH LSTTQIY Sbjct: 255 GV--RYILNERRKKMGWEKTITPHKFRHTFATDLLDAGAEIRAVQELLGHSSLSTTQIYL 312 Query: 300 NVNSKNGGDWMMEIYDQTHP 319 +V+ + + E+Y + HP Sbjct: 313 SVSKEK----IKEVYRKAHP 328 >gi|119469654|ref|ZP_01612523.1| site-specific recombinase [Alteromonadales bacterium TW-7] gi|119446901|gb|EAW28172.1| site-specific recombinase [Alteromonadales bacterium TW-7] Length = 314 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 80/267 (29%), Positives = 137/267 (51%), Gaps = 41/267 (15%) Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSL 125 IR + R +++ R++ LS I+S K+LK + I +S+ N ++ K + L Sbjct: 65 HIRRYSMALRAKQLSGRTISLKLSCIRSLYKFLKAKNIAQQSHYHNPATGIKGPKFAKPL 124 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 P+ L+ Q L++ + + R+ A++ L+Y GLRISE + Q+I Sbjct: 125 PKNLDVDQMARLLEIP------DDDPLAIRDKAMMELMYSSGLRISELVGANMQDINAKS 178 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF-- 243 + ++GKG+K R++P+ +A+ ++ + P Q KP PGVF Sbjct: 179 GEILVRGKGNKERLIPVGTKALEALKKWLTVRP-------QF-------AKPDEPGVFLS 224 Query: 244 ----QRYIRQLRRYL-------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 + IRQ+R + G+ H LRHSFA+H+L + GDLR++Q +LGH L Sbjct: 225 SQKNRISIRQVRLRMQEWGIKQGISSQVHPHKLRHSFASHILESSGDLRAVQELLGHSSL 284 Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHP 319 S TQ+YT+++ ++ + ++YD THP Sbjct: 285 SATQVYTHLDFQH----LAKVYDNTHP 307 >gi|311281510|ref|YP_003943741.1| tyrosine recombinase XerC [Enterobacter cloacae SCF1] gi|308750705|gb|ADO50457.1| tyrosine recombinase XerC [Enterobacter cloacae SCF1] Length = 300 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 88/302 (29%), Positives = 149/302 (49%), Gaps = 19/302 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ L +ER LS +TL +Y RQ + E + + +Q IR++ + Sbjct: 11 ERFLRYLGVERQLSPITLLNYR---RQLDAIMTLAGESGVA--SWQQCDAAVIRSWAVRS 65 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + +G SL LS ++SF +L + + + + K LP+ ++ L+ Sbjct: 66 RRKGLGPASLALRLSALRSFFDWLVSQGELSANPAKAVSAPKAPRHLPKNIDVDDVNRLL 125 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D L + R+ A+L ++YG GLR+SE ++L +++ + + + GKG K R Sbjct: 126 DIDL------NDPLAVRDRAMLEVMYGAGLRLSELVNLDLRHLSLESGEVWVMGKGSKER 179 Query: 199 IVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +P+ S + + + DL F + LF GK ++ Q+ + GL Sbjct: 180 RLPIGRSAVQWVEHWLDLRGLFGAEDD---ALFLSKLGKRISTRNVQKRFAEWGIKQGLN 236 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ + +YD Sbjct: 237 SHVNPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDAA 292 Query: 318 HP 319 HP Sbjct: 293 HP 294 >gi|126726516|ref|ZP_01742357.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2150] gi|126704379|gb|EBA03471.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2150] Length = 312 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 89/301 (29%), Positives = 144/301 (47%), Gaps = 38/301 (12%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +L+ E S+ TL +Y D + F ++A +K+ QT S +I ++ Sbjct: 14 TFLEAQSAELDASENTLLAYARDLKDFQDWIA---RQKLDFQTT---SREDIEKYLINCD 67 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q + + R LS +K ++ + ++ L ++ + LP+ L+E + VD Sbjct: 68 AQGLAKSTRARRLSAVKQLFRFAYEDGRRDDNPALQIKGPGRDKRLPKTLSEDE----VD 123 Query: 140 NVLLHTSHETKWID--ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 +L S + ARN+ ++ LLY G+R++E +SL D + + GKG K Sbjct: 124 RLLASASSLGRKDSDRARNTCMMQLLYATGMRVTELVSLPVSAARGDPRMILVMGKGGKE 183 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF-------------Q 244 R+VPL P R+A + LNI+ + K P F Sbjct: 184 RLVPLSPPAREATATW---------LNIRDATQKLAEKKGAAPSRFLFPSSGKLGHITRH 234 Query: 245 RY---IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 R+ I+++ G+ P T HT+RH+FATHLL+ G DLRSIQ++LGH +STT+IYT+ Sbjct: 235 RFYLLIKEISVQAGVDPSKVTPHTMRHAFATHLLARGADLRSIQTLLGHADISTTEIYTH 294 Query: 301 V 301 V Sbjct: 295 V 295 >gi|317476478|ref|ZP_07935727.1| tyrosine recombinase XerD [Bacteroides eggerthii 1_2_48FAA] gi|316907504|gb|EFV29209.1| tyrosine recombinase XerD [Bacteroides eggerthii 1_2_48FAA] Length = 316 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 85/286 (29%), Positives = 144/286 (50%), Gaps = 14/286 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + Q L++E+ L+ T +Y D ++ L FL E I + + + +++ F + Sbjct: 18 RKYQQYLKLEKSLAPNTFDAYMTDLQKLLHFLE---GENIEVGNV---TPDDLQRFAAGL 71 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 I RS R LSGIKSF +L + K +P L ++ + Sbjct: 72 HDIGIHPRSQARILSGIKSFFHFLTVADYLETDPSELLEGPKIGFKIPEVLTVEE----I 127 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D ++ + K RN AIL LY CGLR+SE +L ++ ++ ++++GKG K R Sbjct: 128 DRIISAVDMDKKE-GQRNRAILETLYSCGLRVSELCNLKLSDLYFEEGFIKVEGKGSKQR 186 Query: 199 IVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VP+ P K I +Y+ D + + +F G ++ + I++L G+ Sbjct: 187 LVPISPRAIKEI-KYWLTDRNLGKIKKGYEDYVFLARWGNNISRIMVFHMIKELAEKTGI 245 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ Sbjct: 246 TKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHID 291 >gi|120610000|ref|YP_969678.1| tyrosine recombinase XerD [Acidovorax citrulli AAC00-1] gi|120588464|gb|ABM31904.1| tyrosine recombinase XerD [Acidovorax citrulli AAC00-1] Length = 309 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 82/301 (27%), Positives = 152/301 (50%), Gaps = 15/301 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 ++ L +E GLS+ TL +Y D + +L + + T + ++A+ + R Sbjct: 20 FVDTLWLEDGLSRNTLAAYRRDLALYAQWLGEHVPD--TAGMLDATMEHHLQAYFAARHA 77 Query: 81 QKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q S R L+ ++ + ++ L++R+I + + ++ ++ +P+ L+ Q Sbjct: 78 QTRAT-SANRRLTVLRRYFQWALRERRIAIDPTV-RLQAARQPLRVPKTLSAAQV----- 130 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 LL + + + R+ A+L L+Y GLR++E ++L + + LR+ GKG K R+ Sbjct: 131 EALLQSPDTSTALGLRDRAMLELMYASGLRVTELVTLKTYHAGLAEGVLRVMGKGSKERL 190 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VP + + Y D D+ + LF RG + +F +++ + G+ + Sbjct: 191 VPFGEVAAQWLQRYLDHARADILAGQRTDDLFVTRRGAGMTRAMFWVVVKKHAQSAGIHV 250 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + HTLRH+FATHLL++G DLR +Q +LGH +STT IYT+V + + ++ Q H Sbjct: 251 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARER----LKALHAQHH 306 Query: 319 P 319 P Sbjct: 307 P 307 >gi|325127525|gb|EGC50451.1| tyrosine recombinase XerC [Neisseria meningitidis N1568] gi|325133512|gb|EGC56175.1| tyrosine recombinase XerC [Neisseria meningitidis M13399] gi|325206779|gb|ADZ02232.1| tyrosine recombinase XerC [Neisseria meningitidis M04-240196] Length = 305 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 84/306 (27%), Positives = 147/306 (48%), Gaps = 13/306 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+N+ + G S+ T+ +Y D + LA E + LS + A + + Sbjct: 13 YLENI-VREGKSEHTVAAYRRDLEELFALLAQMPSE-AEGGVPQDLSRRDFTAALRRLSQ 70 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + R+L R LS + + +L +R + +++ K+ +P+AL ++ ++D Sbjct: 71 RGLNARTLARKLSSWRQYCVWLVERGLLHTDPAADIKPPKQPERVPKALPQEWLNRMLDL 130 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + + R+ A+ L+YG GLR+SE L ++ D++ + + GKG K R V Sbjct: 131 PV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQV 186 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 PL +A+ Y P + LF G G L+ Q+ + Q G Sbjct: 187 PLTGKSVEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHV 243 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 + H +RHS+A HLL D+R++Q +LGH LSTTQIYT ++ D + +YD+ HP Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAHPR 299 Query: 321 ITQKDK 326 ++D+ Sbjct: 300 AKRQDE 305 >gi|329118159|ref|ZP_08246871.1| site-specific tyrosine recombinase XerC [Neisseria bacilliformis ATCC BAA-1200] gi|327465819|gb|EGF12092.1| site-specific tyrosine recombinase XerC [Neisseria bacilliformis ATCC BAA-1200] Length = 308 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 88/311 (28%), Positives = 140/311 (45%), Gaps = 22/311 (7%) Query: 9 IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68 + E +L+ L E G S TL + D Q L + E LS Sbjct: 14 MTPAEFTARSAEYLETLRSE-GRSPHTLAACRRDLAQLAKLLPEHAEP---------LSR 63 Query: 69 TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 + A + K +RS+ R LS + + YL + + + ++ K LP+A Sbjct: 64 HDFAAALKKLSQSGASERSMARKLSVWRRYADYLVRHGLLDANPAGRLKAPKLPQLLPKA 123 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 ++ + L D + +DAR+ A+ LLYG GLR++EA +L +++ ++ + Sbjct: 124 VDAEPLNALFDRAACDDA-----LDARDLALFELLYGSGLRVAEAQALDVADVLIEEGWV 178 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 ++GKG K R VPL + Y P + LF G+ L Q +R Sbjct: 179 GVRGKGGKHRQVPLTGQCATVLAAYL---PQRAAAAGETALFTNRLGRRLGIRQMQNRLR 235 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 G P + H LRHS+A+HLL +G +R+IQ +LGH L+ TQIYT ++ Sbjct: 236 LWAVKNGSPQHISPHMLRHSYASHLLQSGAGIRAIQELLGHSDLAATQIYTKLDFAR--- 292 Query: 309 WMMEIYDQTHP 319 + E+YD+ HP Sbjct: 293 -LAEVYDRAHP 302 >gi|294085482|ref|YP_003552242.1| tyrosine recombinase XerD [Candidatus Puniceispirillum marinum IMCC1322] gi|292665057|gb|ADE40158.1| tyrosine recombinase XerD [Candidatus Puniceispirillum marinum IMCC1322] Length = 311 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 83/309 (26%), Positives = 144/309 (46%), Gaps = 21/309 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +LQ L +R + TL +Y D + +T+ + ++R I Sbjct: 16 EGFLQALSADRASAANTLAAYRRDLNDVATIMQGID------KTLHNATVDDLRQAIHAW 69 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 +++ RS+ R LS ++ F+ +L + I ++ + + + P++L E + + L+ Sbjct: 70 HLRRLSARSVARRLSALRQFMGWLVEDNIRIDNPMRWIDSPSVPAPAPKSLTEAEVIALL 129 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + E + R AIL + Y GLR+SE + L + +L + GKG + R Sbjct: 130 KAA---NALEPEAAAVRARAILEIFYATGLRVSEVVKLQVAQFRRNPESLLVTGKGGRER 186 Query: 199 IVPLLPSVRKAI---LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 +VPL + + A+ +E D L + P+ G P+ F ++ L G Sbjct: 187 VVPLGDAAKTAVQYWIEIRDRHAAALMSDYLFPMGDG----PMTRHQFASLLKSLALAAG 242 Query: 256 L-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 + P + H LRHSFATH+L+ G DLRS+Q++LGH ++TTQIYT D + + Sbjct: 243 INPDRVSPHVLRHSFATHMLNRGADLRSLQTLLGHADITTTQIYTATRP----DRLAGLV 298 Query: 315 DQTHPSITQ 323 HP T+ Sbjct: 299 ASAHPLATK 307 >gi|330818124|ref|YP_004361829.1| Tyrosine recombinase XerD [Burkholderia gladioli BSR3] gi|327370517|gb|AEA61873.1| Tyrosine recombinase XerD [Burkholderia gladioli BSR3] Length = 392 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 94/299 (31%), Positives = 145/299 (48%), Gaps = 23/299 (7%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E GLSK TL +Y D F +LA E + + +S + A+I+ R K Sbjct: 111 LWLEHGLSKNTLDAYRRDLTLFAQWLAQTHEASLDV-----VSEPILTAYIAARSDGKA- 164 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S R LS + + + + L + + K++ P L+E Q L+ + Sbjct: 165 -TSSNRRLSVFRRYYGWALREHRAAADPTLRVLSAKQAPRFPSTLSEGQVEALLGAPEVE 223 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 T+ + R+ +L L+Y GLR+SE ++L + + +R+ GKG K R+VP Sbjct: 224 TA-----LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNDGVVRVMGKGSKERLVPF-G 277 Query: 205 SVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ--LRRYLGLPLST 260 V +E Y + P L LF RG+ + F I++ LR + LS Sbjct: 278 EVAHGWIERYLREARPALLGARASDALFVTARGEGMTRQQFWNIIKRHALRAEIRAHLSP 337 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V + + ++ Q HP Sbjct: 338 --HTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARER----LRSLHAQHHP 390 >gi|326566125|gb|EGE16282.1| tyrosine recombinase XerD [Moraxella catarrhalis BC1] Length = 307 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 81/294 (27%), Positives = 150/294 (51%), Gaps = 19/294 (6%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 + RGLS T +Y D R + +++ + +++R + + K +R Sbjct: 30 LARGLSIATRNAYSQDVRLCI---------RLSDMPVNLWQPSDVRNHLMCLKDAKKSER 80 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S+ R+L+ + F + + ++ +++ K +LP+ L+E++ +L+D + + Sbjct: 81 SIARALASLCQFFLWQIESGYREDNPCESIKTPKLGKTLPKTLSEQEVSSLLDAPDISSV 140 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 R+ A+L +LY CGLR+SE SL+ +++ L + GKG+K+R++PL Sbjct: 141 R-----GLRDKAMLEVLYACGLRVSELTSLSLEHLNLTAGWLSVTGKGNKMRLIPLGEYA 195 Query: 207 RKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 A+ EY + + +F +G + F I++ G+ + + HTL Sbjct: 196 LSALNEYLAVRGSLLIGKKDCQAVFLTEQGGYMTRHNFWHLIKKYALMAGINTAISPHTL 255 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 RH+FATHL+++G DLRS+Q +LGH LSTTQIYT+V + + ++ + HP Sbjct: 256 RHAFATHLVNHGADLRSVQLLLGHSDLSTTQIYTHVATTR----LQNLHAKHHP 305 >gi|285019429|ref|YP_003377140.1| tyrosine recombinase [Xanthomonas albilineans GPE PC73] gi|283474647|emb|CBA17146.1| probable tyrosine recombinase protein [Xanthomonas albilineans] Length = 324 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 94/309 (30%), Positives = 145/309 (46%), Gaps = 23/309 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +L E+GL++ +L SY D F + + + RQ + +++ R Sbjct: 29 QQFLDAAWTEQGLARQSLDSYRRDLEGFARWRDGVGDGLVGAD--RQALFN----YLAWR 82 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 RS R LS +++F +R + + + SLP+AL E Q Sbjct: 83 TELGYTQRSNARWLSSLRAFFALRLRRGQRGDDPTALLEPPRLPRSLPKALAESQI---- 138 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + LL T + R+ A+L L+Y GLR+SE + L + Q LR+ GKG K R Sbjct: 139 -DALLAAPDTTAPLGLRDRAMLELMYAAGLRVSELVQLPANAVNLRQGVLRVTGKGSKER 197 Query: 199 IVPLLPSVRKAILEYYDLCPFDL-------NLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 +VPL + + Y D L + +PLF +PL+ F I++ Sbjct: 198 LVPLGEESQHWLQCYLDTARSVLVAGQAVPARDGAVPLFIDAARRPLSRQQFWVLIKRYA 257 Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ P+ + H LRHSFATHLL+ G DLR++Q +LGH LSTTQIYT V ++ + Sbjct: 258 TLAGIDPMRISPHGLRHSFATHLLNRGADLRALQMLLGHSSLSTTQIYTLVAREH----L 313 Query: 311 MEIYDQTHP 319 ++ + HP Sbjct: 314 QTLHRKHHP 322 >gi|269123216|ref|YP_003305793.1| integrase family protein [Streptobacillus moniliformis DSM 12112] gi|268314542|gb|ACZ00916.1| integrase family protein [Streptobacillus moniliformis DSM 12112] Length = 299 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 90/291 (30%), Positives = 142/291 (48%), Gaps = 14/291 (4%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLS 93 T++SY+ D QF+ +L + I+ ++ R+FI+ + ++ RS+ R LS Sbjct: 22 TVKSYKKDLEQFIEYL----KNNEGIEDFNKVEIFTFRSFIAYLNVELQVNKRSINRKLS 77 Query: 94 GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153 I++F KYL + E+ + + K LP L ++ L + L K Sbjct: 78 AIRTFFKYLLENDYIIENKAVYISTPKFEKPLPNFLTKEDIDKLRSVIKLE-----KITG 132 Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213 R+ AI+ LLY GLR E L LT I +R+ GKG+K RI + +K I EY Sbjct: 133 LRDRAIIELLYSSGLRSMELLDLTEYTIDLKNMEVRVIGKGNKERISFFSNNAQKYISEY 192 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 + + + +F G L+ +R I + G+ T H RHSFAT L Sbjct: 193 IERKKEEYKNYNKDAIFVNKDGNKLDSRSLRRLITKYSIKAGINKEVTPHIFRHSFATEL 252 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 L+ G D+R +Q +LGH ++TTQ YT++ SKN + + Y ++HP T+K Sbjct: 253 LNQGVDIRFVQELLGHSSIATTQFYTHI-SKNT---LKDAYMKSHPFATKK 299 >gi|71064633|ref|YP_263360.1| phage integrase [Psychrobacter arcticus 273-4] gi|71037618|gb|AAZ17926.1| probable phage integrase [Psychrobacter arcticus 273-4] Length = 312 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 75/238 (31%), Positives = 129/238 (54%), Gaps = 13/238 (5%) Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 R+ R LS ++ F ++ + ++ +++ K LP+ L E VDN+L Sbjct: 82 RTQARMLSSLRQFYLWMIASNLREDNPCERIKSPKLGRPLPKDLAEAD----VDNLLAAP 137 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 T + R+ A+L +LY CGLR+SE ++L+ + + + L+I GKG+K R+VPL Sbjct: 138 DSSTA-LGLRDKAMLEVLYACGLRVSELVNLSLEQVNLNSGWLQITGKGNKTRLVPLGEY 196 Query: 206 VRKAILEYYDLCPFDLNLNIQL----PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 A+ +Y DL +++ +F +G + F +++ + + + + Sbjct: 197 ASDALEDYLTHGRGDLIAHLKAGNCQAVFLTAQGGYMTRQNFWYLLKKYAKVASIDKALS 256 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HTLRH+FATHLL++G DLRS+Q +LGH LSTTQIYT+V + + +++ + HP Sbjct: 257 PHTLRHAFATHLLNHGADLRSVQLLLGHSNLSTTQIYTHVATAR----LQKLHAEHHP 310 >gi|168186262|ref|ZP_02620897.1| tyrosine recombinase XerD [Clostridium botulinum C str. Eklund] gi|169295813|gb|EDS77946.1| tyrosine recombinase XerD [Clostridium botulinum C str. Eklund] Length = 292 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 83/294 (28%), Positives = 153/294 (52%), Gaps = 19/294 (6%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87 ++ LSK T+++Y D +F FL K + I I A++ + +K D S Sbjct: 14 KKELSKNTIEAYNRDIIKFGKFL------KERDENILNADMVSIMAYVQTLKKEKKADSS 67 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--LLHT 145 + RS+ I++F KYL + ++ ++N K ++P L +D V L+ Sbjct: 68 IIRSIVSIRNFYKYLIRIGKDVDNPLINYEVPKNKRNIPEVLT-------IDEVEKFLNA 120 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 ++ R+ A+L L+Y G+++SE L +T +I ++ +G DK RI+P+ Sbjct: 121 PECNEYKGIRDKAMLELMYATGMKVSELLRVTIFDINLKLCYVKCRGAKDKERIIPIGSY 180 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + EY ++ N ++ LF +RG + F + +++ + G+ ++TL Sbjct: 181 AVNCLNEYLNVRDKMSAANSEI-LFCNLRGGKMTRQGFWKIVKKYAKEAGINKKIDSYTL 239 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 RHSFA HLL NG D++S+Q +LGH ++TTQIY++++ +N ++++Y + HP Sbjct: 240 RHSFAVHLLQNGADIKSVQELLGHNTIATTQIYSSISKQNK---IVDVYKKAHP 290 >gi|158426110|ref|YP_001527402.1| tyrosine recombinase [Azorhizobium caulinodans ORS 571] gi|158332999|dbj|BAF90484.1| tyrosine recombinase [Azorhizobium caulinodans ORS 571] Length = 306 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 87/292 (29%), Positives = 139/292 (47%), Gaps = 24/292 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +ERG S+ TL +Y D F FL+ + I + +IRA++++ Sbjct: 10 FLDMQAVERGASRHTLDAYGRDLADFEDFLS------VRDHGIDAATTDDIRAYLAELTD 63 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + ++ R LS I+ ++L + + K+ LP+ LN Q L+D Sbjct: 64 RGLKATTVARRLSAIRQLYRFLYAEGRRGDDPAAVLEGPKRGRPLPKVLNVDQVTRLID- 122 Query: 141 VLLHTSHETKWIDA---------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 T+H+ D R ++ LLY GLRISE +SL P + + + Sbjct: 123 ----TAHDRAGEDVSSPERLRRLRVVCLVELLYATGLRISELVSL-PAAAARARDVIMVT 177 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF-RGIRGKPLNPGVFQRYIRQL 250 GKG K R+VPL + A+ Y + L + LF L R ++ L Sbjct: 178 GKGSKERMVPLSGPAKAAMTAYL-AARAESGLAVSKWLFPTAAESGHLTRQHAARELKDL 236 Query: 251 RRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G+P + + H LRH+FA+HLL++G DLR +Q++LGH +STTQIYT++ Sbjct: 237 AVAAGVPPQALSPHVLRHAFASHLLAHGADLRIVQTLLGHADVSTTQIYTHI 288 >gi|296114058|ref|YP_003627996.1| tyrosine recombinase XerD [Moraxella catarrhalis RH4] gi|295921752|gb|ADG62103.1| tyrosine recombinase XerD [Moraxella catarrhalis RH4] gi|326559455|gb|EGE09878.1| tyrosine recombinase XerD [Moraxella catarrhalis 7169] gi|326561283|gb|EGE11642.1| tyrosine recombinase XerD [Moraxella catarrhalis 46P47B1] gi|326565171|gb|EGE15362.1| tyrosine recombinase XerD [Moraxella catarrhalis 103P14B1] gi|326567828|gb|EGE17932.1| tyrosine recombinase XerD [Moraxella catarrhalis 12P80B1] gi|326568170|gb|EGE18252.1| tyrosine recombinase XerD [Moraxella catarrhalis BC8] gi|326572813|gb|EGE22798.1| tyrosine recombinase XerD [Moraxella catarrhalis CO72] gi|326573743|gb|EGE23701.1| tyrosine recombinase XerD [Moraxella catarrhalis O35E] gi|326574632|gb|EGE24568.1| tyrosine recombinase XerD [Moraxella catarrhalis 101P30B1] Length = 307 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 81/294 (27%), Positives = 150/294 (51%), Gaps = 19/294 (6%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 + RGLS T +Y D R + +++ + +++R + + K +R Sbjct: 30 LARGLSIATRNAYSQDVRLCI---------RLSDTPVNLWQPSDVRNHLMCLKDAKKSER 80 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S+ R+L+ + F + + ++ +++ K +LP+ L+E++ +L+D + + Sbjct: 81 SIARALASLCQFFLWQIESGYREDNPCESIKTPKLGKTLPKTLSEQEVSSLLDAPDISSV 140 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 R+ A+L +LY CGLR+SE SL+ +++ L + GKG+K+R++PL Sbjct: 141 R-----GLRDKAMLEVLYACGLRVSELTSLSLEHLNLTAGWLSVTGKGNKMRLIPLGEYA 195 Query: 207 RKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 A+ EY + + +F +G + F I++ G+ + + HTL Sbjct: 196 LSALNEYLAVRGSLLIGKKDCQAVFLTEQGGYMTRHNFWHLIKKYALMAGINTAISPHTL 255 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 RH+FATHL+++G DLRS+Q +LGH LSTTQIYT+V + + ++ + HP Sbjct: 256 RHAFATHLVNHGADLRSVQLLLGHSDLSTTQIYTHVATTR----LQNLHAKHHP 305 >gi|239947482|ref|ZP_04699235.1| tyrosine recombinase XerD [Rickettsia endosymbiont of Ixodes scapularis] gi|239921758|gb|EER21782.1| tyrosine recombinase XerD [Rickettsia endosymbiont of Ixodes scapularis] Length = 306 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 95/298 (31%), Positives = 151/298 (50%), Gaps = 28/298 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ L ER LSK ++ SY+ D F +LA ++ I T +R +I T Sbjct: 7 FLEMLLAERALSKNSILSYKRDLFDFQNYLAKQKLSELNITT------ENVRDWIEYLAT 60 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS+ R +S IKS+ ++L + +LN+ K N LP L+ Q + + Sbjct: 61 NDLQARSINRKISTIKSYYEFLISENHIAFNPVLNVDLPKYQNKLPEILSIDQ----IKS 116 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-------LRIQGK 193 +L H S + R +A+++LLY GLR+SE +SL +I+ ++++ + GK Sbjct: 117 LLEHCSQDNSPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNKTSKGEVRKIFSVLGK 176 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LF--RGIRGKPLNPGVFQRY 246 G+K R++ + +I +Y L D+ +N P LF + G + F Sbjct: 177 GNKERVIVINEQAVISIAKY--LAIRDVFVNKAKPKNLIYLFPSSALAGY-MTRQNFAIL 233 Query: 247 IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 ++ Y GL P + H LRHSFA+HLL G DLR IQ +LGH +STTQIYT++ + Sbjct: 234 LKSAALYAGLNPEHISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQT 291 >gi|238020532|ref|ZP_04600958.1| hypothetical protein GCWU000324_00418 [Kingella oralis ATCC 51147] gi|237867512|gb|EEP68518.1| hypothetical protein GCWU000324_00418 [Kingella oralis ATCC 51147] Length = 294 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 92/293 (31%), Positives = 140/293 (47%), Gaps = 23/293 (7%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87 +R S TL +YE + R+ L T Q R+ + +A + + + S Sbjct: 17 QRNRSPHTLIAYERELRELANLL------PATAQPARR----DFQAAFRQLSQRGLHPAS 66 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 L R+LS + + YL ++ + + +++ LKK LPRA+ E+ L N LL Sbjct: 67 LARALSAWRQYCDYLVRQGSLKTNPVQDIKALKKPQRLPRAI-ERDTL----NALLDQPA 121 Query: 148 ETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 E+ A R+ AI LLYG GLR++E L ++ D L + GKG K R VPL S Sbjct: 122 ESDDTLALRDQAIAELLYGSGLRLAELAGLNLADVYLDAGWLNVHGKGSKQRQVPLTQSS 181 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 + ++ P + + LF G L + + + G P + H LR Sbjct: 182 VALLQQWLAQRPAQPH---ETALFTTQHGTRLGSRQIAKRLDNWAQQHGSPQHISPHMLR 238 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HSFA HLL D+R++Q +LGH LS+TQIYT ++ D + +YD+THP Sbjct: 239 HSFAGHLLQASRDIRAVQDLLGHASLSSTQIYTKLDF----DHLAAVYDETHP 287 >gi|281602227|gb|ADA75211.1| Tyrosine recombinase xerD [Shigella flexneri 2002017] Length = 273 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 13/253 (5%) Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 +++A +++R S R LS ++ +YL + K + ++ + K LP+ L Sbjct: 29 DLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDL 88 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 +E Q L+ L+ ++ R+ A+L +LY GLR+SE + LT +I Q +R Sbjct: 89 SEAQVERLLQAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVR 143 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYI 247 + GKG+K R+VPL + Y + P+ LN ++I + LF R + + F I Sbjct: 144 VIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRI 202 Query: 248 RQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 + G+ + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ Sbjct: 203 KHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER- 261 Query: 307 GDWMMEIYDQTHP 319 + +++ Q HP Sbjct: 262 ---LRQLHQQHHP 271 >gi|255029340|ref|ZP_05301291.1| hypothetical protein LmonL_09813 [Listeria monocytogenes LO28] Length = 450 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 85/302 (28%), Positives = 148/302 (49%), Gaps = 17/302 (5%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 K Q + L ER S T +YE D L F F E+ IT T +Q+++ ++R ++ Sbjct: 6 KLEQQFFDYLHSERNYSVNTSTAYEND---LLDFRRFLNEQAIT--TYQQVTFLDVRIYL 60 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 ++ + + ++ R +S ++SF +L + + E+ + + K LP+ ++ Sbjct: 61 TELKQKSFSRTTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEME 120 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L +++ +ET + R+ +L +LYG G+R+SE + ++ + I+GKG+ Sbjct: 121 ALFQ--VVYEDNET--LTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGN 176 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPLNPGVFQRYIRQL 250 K R VP AI +Y P +NL + L G PL + + ++ Sbjct: 177 KERYVPFGAYAEDAITDY---LPERVNLMSRYKKSHDALLVNHYGDPLTTRGIRYCLTKI 233 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 L H LRH+FAT LL+NG D+R++Q +LGH LS+TQIYT+V + ++ Sbjct: 234 ISKASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKRAFKVYL 293 Query: 311 ME 312 E Sbjct: 294 YE 295 >gi|219848360|ref|YP_002462793.1| integrase family protein [Chloroflexus aggregans DSM 9485] gi|219542619|gb|ACL24357.1| integrase family protein [Chloroflexus aggregans DSM 9485] Length = 299 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 86/287 (29%), Positives = 140/287 (48%), Gaps = 12/287 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L ER +S T +Y D Q FL ++ I+ ++ + AF+ + Sbjct: 8 FLAYLADERKMSANTTAAYRTDLEQLCSFL-----QERGIEQWNDVNTEAMLAFVITLKE 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 +K + ++ R L+ IKSF +L++R + + + P+A+++ Q L++ Sbjct: 63 KKYANSTVARRLAAIKSFFSFLRERNVVHHDPTEQLDAPRVDRFPPKAISQHQVDELLEL 122 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 L + S R+ A+L +LY G+R+SE ++L +I T+R G+ + RI+ Sbjct: 123 PLQNNSGPEGL---RDKAMLEVLYATGMRVSELVALNIDDISFTSKTVRCLGRQGRERIL 179 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 PL + A+ EY D+ L + LF RGK L F +++ GL Sbjct: 180 PLSEAALTALEEYLDIARPKLANHAHGNDEALFLNHRGKRLTRQGFWLILKEYADRAGLH 239 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 T H LRHSFA H L NG DLR +Q LGH ++TTQIYT++ + Sbjct: 240 -DLTPHMLRHSFAAHQLRNGVDLRELQERLGHASIATTQIYTHLTEE 285 >gi|290894169|ref|ZP_06557140.1| integrase/recombinase XerC [Listeria monocytogenes FSL J2-071] gi|290556299|gb|EFD89842.1| integrase/recombinase XerC [Listeria monocytogenes FSL J2-071] gi|313609074|gb|EFR84788.1| tyrosine recombinase XerC [Listeria monocytogenes FSL F2-208] Length = 300 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 85/309 (27%), Positives = 147/309 (47%), Gaps = 21/309 (6%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 K Q +L L ER S T +YE D F FL + I+T +Q+++ ++R ++ Sbjct: 6 KLEQQFLDYLHSERNYSVNTSTAYENDLLDFRRFL-----NEQAIETYQQVTFLDVRIYL 60 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 ++ + + ++ R +S ++SF +L + + TE+ + + K LP+ ++ Sbjct: 61 TELKQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEME 120 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L V + + + R+ +L +LYG G+R+SE + ++ + I+GKG+ Sbjct: 121 ALFQVVY----EDNETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGN 176 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPLNPGVFQRYIRQL 250 K R VP AI +Y P L + L G PL + + ++ Sbjct: 177 KERYVPFGVYAEDAITDY---LPKRTELMTRYKKSHDALLVNHYGDPLTTRGIRYCLTKI 233 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 L H LRH+FAT LL+NG D+R++Q +LGH LS+TQIYT+V ++ + Sbjct: 234 ISKASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH----L 289 Query: 311 MEIYDQTHP 319 Y + HP Sbjct: 290 KSTYMKHHP 298 >gi|254247398|ref|ZP_04940719.1| Phage integrase [Burkholderia cenocepacia PC184] gi|124872174|gb|EAY63890.1| Phage integrase [Burkholderia cenocepacia PC184] Length = 316 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 92/322 (28%), Positives = 148/322 (45%), Gaps = 22/322 (6%) Query: 3 GNNLPEIVSFELLKERQN---WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59 +N + S LL R + + L +ERGL++ TL +Y D F +LA + + Sbjct: 10 ADNDTDAASPALLASRASIDVFCDALWLERGLARNTLDAYRRDLALFSQWLAATHDAPLD 69 Query: 60 IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119 + +I+ R K S R LS + + + + + L + + Sbjct: 70 -----SADEAMVTGYIAARSDGKA--TSSNRRLSVFRRYYGWAVREHRASADPTLRITSA 122 Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 K+ P L+E Q L+ + T + R+ +L L+Y GLR+SE ++L Sbjct: 123 KQGARFPSTLSEAQVEALLGAPDIGTP-----LGLRDRTMLELMYASGLRVSELVTLKTV 177 Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKP 237 + ++ +R+ GKG K R+VP V +E Y D P L LF RG Sbjct: 178 EVGLNEGVVRVMGKGSKERLVPF-GEVAHGWIERYLRDARPALLGARAADALFVTARGDG 236 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + F I++ + + + HTLRH+FATHLL++G DLR +Q +LGH +STTQI Sbjct: 237 MTRQQFWNIIKRHAQQADVRAHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQI 296 Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319 YT+V + + ++ Q HP Sbjct: 297 YTHVARER----LRTLHAQHHP 314 >gi|313619210|gb|EFR90975.1| tyrosine recombinase XerC [Listeria innocua FSL S4-378] Length = 300 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 85/310 (27%), Positives = 149/310 (48%), Gaps = 29/310 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L ER S+ T +YE D F FL E+ I+ +Q+++ ++R ++++ Sbjct: 9 KRFLDYLHSERNYSEHTSTAYENDLSDFRRFL----NEQAIIE-YQQVTFLDVRIYLTEL 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + ++ R +S ++SF +L + + TE+ + + K LP+ ++ L Sbjct: 64 KQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEMEALF 123 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 V + + + R+ IL +LYG G+R+SE + ++ + I+GKG+K R Sbjct: 124 QVVY----EDNETLTLRDRVILEVLYGTGIRVSECAGIMLSDLDTSYQAILIRGKGNKER 179 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQL---------PLFRGIRGKPLNPGVFQRYIRQ 249 VP AI +Y L+ I+L L G PL + + + Sbjct: 180 YVPFGAYAEDAITDY-------LSGRIELMTRFKKTHDALLINHYGDPLTTRGIRYCLTK 232 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 + L H LRH+FAT LL+NG D+R++Q +LGH LS+TQIYT+V ++ Sbjct: 233 IISKASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH---- 288 Query: 310 MMEIYDQTHP 319 + Y + HP Sbjct: 289 LKSTYMKHHP 298 >gi|289663723|ref|ZP_06485304.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289668605|ref|ZP_06489680.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 323 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 92/309 (29%), Positives = 147/309 (47%), Gaps = 23/309 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L E+G+++ TL+SY D + A + I Y +RA Sbjct: 28 ERFLDRFWAEQGVARQTLESYRRDLEGLARWRAGAGGGLLGIDRAALFDYLRLRA----- 82 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 RS R LS +++F + + ++ + + SLP+AL E Q + Sbjct: 83 -KANYSPRSTARLLSTLRAFYGLCLRDGMRSDDPTALIDPPQLPRSLPKALTESQ----I 137 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + +L +T R+ A+L L+Y GLR+SE ++L + Q LR+ GKG K R Sbjct: 138 EALLAAPEVDTP-AGLRDRAMLELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDR 196 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNI-------QLPLFRGIRGKPLNPGVFQRYIRQLR 251 +VPL + + Y L N Q+PLF +PL+ F +++ Sbjct: 197 LVPLGEESQHWLERYLRGARPLLAANKPVAAVDGQVPLFIDAARQPLSRQQFWALVKRYA 256 Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ P + + H LRHSFATHLL++G DLR++Q +LGH LSTTQIYT V ++ + Sbjct: 257 AVAGIDPATVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQH----L 312 Query: 311 MEIYDQTHP 319 +++ HP Sbjct: 313 QKLHASHHP 321 >gi|322381748|ref|ZP_08055702.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154136|gb|EFX46458.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 298 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 93/298 (31%), Positives = 141/298 (47%), Gaps = 18/298 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L+ ER L+ T++SY+ D Q+ FL+ I + + +++ + Sbjct: 12 LQDERRLAPNTVESYKKDLAQYADFLS-----SEGILAWEETQRVHVITYMNNLKQLGRA 66 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 ++ R+L I++ YL + ++ T + + K +P L ++ +DN LL Sbjct: 67 PATISRTLVSIRALYHYLIREQVMTLDPSGQVESPKAETKIPVILTVEE----MDN-LLG 121 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + R+ A+L LLY G+R+SE ++L +I D +R G G K RIVP+ Sbjct: 122 VPNTGTSSGLRDKAMLELLYATGIRVSELITLNKGDIYADLGYVRCTGTGGKERIVPMGK 181 Query: 205 SVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 I Y + L L P LF G + F + +++ G+ T Sbjct: 182 VATLWIQRYLNEAREAL-LKEGKPDKALFLNHIGTRMTRQGFWKMMKKYATEAGIHKEIT 240 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HTLRHSFATHLL NG DLR++Q +LGH LSTTQ YT V M E+YD THP Sbjct: 241 PHTLRHSFATHLLENGADLRAVQELLGHSDLSTTQRYTFVTKTK----MKEVYDLTHP 294 >gi|289705629|ref|ZP_06502018.1| tyrosine recombinase XerD [Micrococcus luteus SK58] gi|289557653|gb|EFD50955.1| tyrosine recombinase XerD [Micrococcus luteus SK58] Length = 338 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 92/315 (29%), Positives = 144/315 (45%), Gaps = 32/315 (10%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L++L +ERGL+ TL +Y D ++ +L E ++ + + F+ T Sbjct: 36 LEHLAVERGLAANTLAAYRRDLERYRRWL-----EAHGVRAPADVDPGHVSGFLRALGTG 90 Query: 82 KIGDRSLK-----RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + G R L R L+ ++ ++ +T ++ K + LP+AL +Q Sbjct: 91 EDGGRPLAVRSAARVLAAVRGLHRFWALEGLTPADPARDVHPPKPGDRLPKALPVEQVTA 150 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP------QNIMDD--QSTL 188 L++ V + T R+ A+L LYG G RISE + L DD Q + Sbjct: 151 LLEAVPVDTP-----AGLRDRALLEFLYGTGARISEVVGLDVDDVVGLAQTGDDGGQPVV 205 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQ 244 R+ GKG K R+VP+ S A L+ + + P LF RG L+ Sbjct: 206 RLFGKGSKERVVPIG-SYAAAALDAWLVRGRPTIMTGVTRSTPALFVNARGGRLSRQSAW 264 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 +++ GL + HTLRH FATHLL+ G D+R +Q +LGH ++TTQ+YT V Sbjct: 265 AVLKRAAERAGLEADVSPHTLRHCFATHLLAGGADVRVVQELLGHASVTTTQVYTLVTV- 323 Query: 305 NGGDWMMEIYDQTHP 319 D + E+Y HP Sbjct: 324 ---DSLREVYAAAHP 335 >gi|16800384|ref|NP_470652.1| hypothetical protein lin1316 [Listeria innocua Clip11262] gi|34222949|sp|Q92C75|XERC_LISIN RecName: Full=Tyrosine recombinase xerC gi|16413789|emb|CAC96547.1| codV [Listeria innocua Clip11262] Length = 300 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 85/310 (27%), Positives = 149/310 (48%), Gaps = 29/310 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L ER S+ T +YE D F FL E+ I+ +Q+++ ++R ++++ Sbjct: 9 KRFLDYLHSERNYSEHTSTAYENDLSDFRRFL----NEQAIIE-YQQVTFLDVRIYLTEL 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + ++ R +S ++SF +L + + TE+ + + K LP+ ++ L Sbjct: 64 KQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEMEALF 123 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 V + + + R+ IL +LYG G+R+SE + ++ + I+GKG+K R Sbjct: 124 QVVY----EDNETLTLRDRVILEVLYGTGIRVSECAGIMLSDLDTSYQAILIRGKGNKER 179 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQL---------PLFRGIRGKPLNPGVFQRYIRQ 249 VP AI +Y L+ I+L L G PL + + + Sbjct: 180 YVPFGAYAEDAITDY-------LSGRIELMTRFKKTHDSLLINHYGDPLTTRGIRYCLTK 232 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 + L H LRH+FAT LL+NG D+R++Q +LGH LS+TQIYT+V ++ Sbjct: 233 IISKASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH---- 288 Query: 310 MMEIYDQTHP 319 + Y + HP Sbjct: 289 LKSTYMKHHP 298 >gi|169830786|ref|YP_001716768.1| phage integrase family protein [Candidatus Desulforudis audaxviator MP104C] gi|169637630|gb|ACA59136.1| phage integrase family protein [Candidatus Desulforudis audaxviator MP104C] Length = 317 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 91/316 (28%), Positives = 146/316 (46%), Gaps = 28/316 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +L L+ ER S T+ +Y+ D L + A + + R +++ Sbjct: 7 GFLAYLQAERQASPRTITAYQKDLFAGLDYFARRRGKADAELRAGDIDLKLFRGYLAHLG 66 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + ++ R ++ +SF +YL + S + M + LP L ++ TL++ Sbjct: 67 QSGLARSTIARKVAAWRSFFRYLVRENAVPASPLAGMSAPRLKKRLPGVLYPEEVGTLLE 126 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 L + R+ A+L +LY GLR+SE + L ++ Q+ +R+ GKG++ R+ Sbjct: 127 APDLSPT------GLRDRALLEMLYAGGLRVSELVGLDLADLELKQAYVRVLGKGNRERL 180 Query: 200 VPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPG----VFQRYIRQLRRY 253 +PL +A+ Y L LF RG+ L VF Y++ L Sbjct: 181 LPLGGYAVEALKRYLAEGRPKLLGGKKTTAALFLNYRGERLTDRGVRLVFTNYLKGLAS- 239 Query: 254 LGLPLST----------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 G+P T H LRH FATHLL G DLR++Q +LGH RLSTTQIYT V++ Sbjct: 240 -GVPGGTRFSGSADRQAGPHLLRHCFATHLLEAGADLRTVQELLGHARLSTTQIYTRVSA 298 Query: 304 KNGGDWMMEIYDQTHP 319 D ++E+Y + HP Sbjct: 299 ----DRLLEVYRRAHP 310 >gi|307132969|ref|YP_003884985.1| site-specific tyrosine recombinase [Dickeya dadantii 3937] gi|306530498|gb|ADN00429.1| site-specific tyrosine recombinase [Dickeya dadantii 3937] Length = 302 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 84/301 (27%), Positives = 146/301 (48%), Gaps = 17/301 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ L +ER LS LT SY Q + + + I + L +RA +++ Sbjct: 12 EAFLRYLRVERQLSPLTQSSY---AHQLQVIIDMLSASGIA--DWQALDAAGVRAVVARG 66 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + SL + LS ++SFL +L R + + K LP+ ++ + L+ Sbjct: 67 KRDGLNAASLAQRLSALRSFLDWLVGRGELKANPARGVPAPKAGRHLPKNMDVDEMSRLL 126 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D L + + R+ A+L ++YG GLR++E + L ++ D + + GKG K R Sbjct: 127 DIDL------SDPLAVRDRAMLEVMYGAGLRLAELVGLDCGHVDLDSGEVWVMGKGSKER 180 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +P+ + + + L D+ +F GK ++ Q+ + G+ Sbjct: 181 KLPIGATAVTWLRNW--LAIRDIYAPEDDAIFISSLGKRISMRNVQKRFAEWGVKQGVNS 238 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 H LRHSFATH+L + GDLR++Q +LGH LSTTQIYT+++ ++ + +YD H Sbjct: 239 HVHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LASVYDAAH 294 Query: 319 P 319 P Sbjct: 295 P 295 >gi|319778432|ref|YP_004129345.1| Tyrosine recombinase XerD [Taylorella equigenitalis MCE9] gi|317108456|gb|ADU91202.1| Tyrosine recombinase XerD [Taylorella equigenitalis MCE9] Length = 297 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 90/299 (30%), Positives = 150/299 (50%), Gaps = 33/299 (11%) Query: 16 KERQNWLQ----NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ----LS 67 +E + W+ +L +E GLSK TL SY D FL ++ I+I I L Sbjct: 3 EENKEWIDRFIDSLWLEEGLSKNTLNSYRLDLNSLNNFL----KDSISILKIDSDQLNLW 58 Query: 68 YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127 + EI + S + T ++ R L+ ++ F + K+ + + L + K LP+ Sbjct: 59 FMEISS--SSKAT------TINRKLATVRKFYAWCIKQNLILKDPCLGISTRKTPQRLPK 110 Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 +++E Q L++ L T+ R+ A+L +LY G+R+SE +++ I D Sbjct: 111 SISESQVEELLNAPDLKTAS-----GLRDKAMLEILYATGMRVSELIAIKTNEISLDAGV 165 Query: 188 LRI-QGKGDKIRIVPLLPS----VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242 +R+ GKG K R+VP+ ++K + E L D + +F G + Sbjct: 166 VRVTMGKGSKDRLVPMGEESEFYLKKYLSEGRPLLEKDKKNSF---VFLNRFGDCMTRQA 222 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 F + I++ +Y + + + H LRH+FATHLL++G DLR +Q +LGH +STTQIYT+V Sbjct: 223 FWQIIKKYAKYTSIKIPLSPHVLRHAFATHLLNHGADLRVVQMLLGHVDISTTQIYTHV 281 >gi|161869347|ref|YP_001598514.1| integrase/recombinase [Neisseria meningitidis 053442] gi|189030079|sp|A9M1G2|XERC_NEIM0 RecName: Full=Tyrosine recombinase xerC gi|161594900|gb|ABX72560.1| integrase/recombinase [Neisseria meningitidis 053442] Length = 305 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 84/306 (27%), Positives = 147/306 (48%), Gaps = 13/306 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+N+ + G S+ T+ +Y D + LA E + LS + A + + Sbjct: 13 YLENI-VREGKSEHTVAAYRRDLEELFALLAQMPSE-AEGGVPQGLSRRDFTAALRRLSQ 70 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + R+L R LS + + +L +R + +++ K+ +P+AL ++ ++D Sbjct: 71 RGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQEWLNRMLDL 130 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + + R+ A+ L+YG GLR+SE L ++ D++ + + GKG K R V Sbjct: 131 PV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQV 186 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 PL +A+ Y P + LF G G L+ Q+ + Q G Sbjct: 187 PLTGKSVEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHV 243 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 + H +RHS+A HLL D+R++Q +LGH LSTTQIYT ++ D + +YD+ HP Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAHPR 299 Query: 321 ITQKDK 326 ++D+ Sbjct: 300 AKRQDE 305 >gi|300087795|ref|YP_003758317.1| integrase family protein [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527528|gb|ADJ25996.1| integrase family protein [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 328 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 87/269 (32%), Positives = 130/269 (48%), Gaps = 24/269 (8%) Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI---------LNMRNLKK 121 IR +I+ Q + S+ R LS I+S +YL + +I TES + L+ ++K Sbjct: 71 IRGYIAWLLEQGVVKSSVVRKLSAIRSLFRYLLREEIITESPLPVTRKHGGRLSAFSIKL 130 Query: 122 SNSLPRALNEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 LP L VD + LL +K + R+ AI+ ++Y GLRISE + Sbjct: 131 DKRLPSFLT-------VDEMERLLEAPETSKPVGLRDKAIMEMIYAAGLRISELSDIKVS 183 Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKP 237 + LR+ GKG K R+V + A+ +Y + L + LF RG Sbjct: 184 QVDYYSRELRVTGKGQKERLVIIGQPAADAVKKYLEKARPKLAKAERATDSLFLNYRGGS 243 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L+ Q+ I + R G+ H LRHSFATHLL G DLR +Q +LGH LSTTQI Sbjct: 244 LSVRSMQKLILRYARIAGIRQEVHPHLLRHSFATHLLDGGADLRVVQELLGHSSLSTTQI 303 Query: 298 YTNVNSKNGGDWMMEIYDQTHPSITQKDK 326 YT+V+ ++Y +HP ++++ Sbjct: 304 YTHVSRNQA----RKVYLSSHPLAKEQER 328 >gi|269978219|ref|ZP_06185169.1| tyrosine recombinase XerD [Mobiluncus mulieris 28-1] gi|269933728|gb|EEZ90312.1| tyrosine recombinase XerD [Mobiluncus mulieris 28-1] Length = 319 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 90/310 (29%), Positives = 149/310 (48%), Gaps = 22/310 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK- 77 Q++L L +ERG S T+ +Y+ D ++++ +L + T+ Q++ ++ F+ Sbjct: 18 QDFLNYLSVERGASPHTIAAYQRDLQRYVAYLQILGRD-----TLAQVTEVDLEGFVRAL 72 Query: 78 ----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 +G S++R L+ +S+ +YL + S N+ + K LPR L E Sbjct: 73 GDGFASFPPLGSTSVRRCLAAARSWHRYL----FDSGSLGANVASSVKPAKLPRRLPETL 128 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQ 191 L ++ +L S R+ A+L LY G RISEA++L +I + + +R+ Sbjct: 129 NLEEMEALLAAASSPGDSNSLRDRALLEFLYASGARISEAMNLVLDDIDFETEPALVRLF 188 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQ 249 GKG K RI L +A+ Y L Q +F GKP++ I+ Sbjct: 189 GKGRKERISMLGRQACQALQAYLVRVRPTLAEKGQSIGRVFLNTYGKPMSRQTAWAIIQA 248 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 + + HTLRH FATHLL G D+R +Q +LGH ++TT+IYT V+ + Sbjct: 249 AAKRAQIDRPVHPHTLRHCFATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQ----M 304 Query: 310 MMEIYDQTHP 319 ++E+Y HP Sbjct: 305 LLEVYASAHP 314 >gi|56420265|ref|YP_147583.1| integrase/recombinase [Geobacillus kaustophilus HTA426] gi|56380107|dbj|BAD76015.1| integrase/recombinase [Geobacillus kaustophilus HTA426] Length = 301 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 88/283 (31%), Positives = 144/283 (50%), Gaps = 14/283 (4%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-I 83 L+IE+ S T+ Y D R F FL + ++Q + ++ T +R FI + T++ + Sbjct: 14 LQIEKNYSLNTVDGYAYDLRCFENFL---IQHGYSVQ-LHDITKTHVRRFIQHQITKENV 69 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 R++ R +S +KSF KY K + ++ + K + LP + +L+ + + Sbjct: 70 KPRTIYRRISCLKSFSKYCVKENLIDSDFMIGIDTPKTDSKLPTYM----SLSELRKLFH 125 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 + + RN + LL G+R SE + LT + I +T+RI GKG K R++PL Sbjct: 126 FLEQDNSRMAMRNHLLFKLLATTGMRRSEIVELTWEQIDLSNNTIRIYGKGKKERLLPLH 185 Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TA 262 P V I Y + + L+ P+F GK LNP + +++ + GLP + Sbjct: 186 PMVVPLIKSYMESLE-EYQLHPSQPVFLNKNGKKLNPRGLHKIFKEILQKAGLPPQRFSL 244 Query: 263 HTLRHSFATHLLSNGG---DLRSIQSILGHFRLSTTQIYTNVN 302 H LRH+FAT L+ DLR++Q +LGH L TTQ+YT+V+ Sbjct: 245 HHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVD 287 >gi|332304595|ref|YP_004432446.1| tyrosine recombinase XerC [Glaciecola agarilytica 4H-3-7+YE-5] gi|332171924|gb|AEE21178.1| tyrosine recombinase XerC [Glaciecola agarilytica 4H-3-7+YE-5] Length = 298 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 83/296 (28%), Positives = 148/296 (50%), Gaps = 22/296 (7%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L+ ER L+ ++++Y+ RQF + ++I + LS +R ++ R Q + Sbjct: 18 LKYERNLAAKSIENYQ---RQFASIC-----QTLSISSWSALSVEHVRQVLNHARRQGLS 69 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 RS+ LS ++ + YL + ++ + + ++ K+ LP+ LN VD + Sbjct: 70 PRSIALRLSALRGYCAYLVELEVLSSNPAKAVQAPKQGKPLPKQLN-------VDEMHQL 122 Query: 145 TSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 + + A R+ A+L L Y CGLR++E L ++ DD LR+ GKG K R++P+ Sbjct: 123 LDFDDDSLLAIRDKAMLELTYSCGLRLAELADLNLNSLQDD-GQLRVMGKGSKERLLPVG 181 Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 + ++ + +L + LF + ++ + ++ + L H Sbjct: 182 KKALTCVGQWLKV-RGELADGNEPALFLSKHRRRISHRQIAKRMQLWAKQQHLDQDINPH 240 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LRHSFATH+L + GDLR +Q +LGH LSTTQ+YT++N ++ + +YD HP Sbjct: 241 KLRHSFATHILESSGDLRGVQELLGHANLSTTQVYTHLNFQH----LASVYDTAHP 292 >gi|148651956|ref|YP_001279049.1| tyrosine recombinase XerD [Psychrobacter sp. PRwf-1] gi|148571040|gb|ABQ93099.1| tyrosine recombinase XerD [Psychrobacter sp. PRwf-1] Length = 312 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/238 (31%), Positives = 127/238 (53%), Gaps = 13/238 (5%) Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 R+ R LS ++ F ++ + ++ ++ K SLP+ L+E LL Sbjct: 82 RTQARMLSSLRQFYLWMVGNERREDNPCERIKTPKIGRSLPKDLSENDV-----ESLLSA 136 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 + + R+ A+L +LY CGLR+SE ++L+ + + + L+I GKG+K R+VPL Sbjct: 137 PDTSTALGLRDKAMLEVLYACGLRVSELMNLSLEQVNLNAGWLQITGKGNKTRLVPLGEY 196 Query: 206 VRKAILEYYDLCPFDLNLNIQ----LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 A+ +Y +L +++ +F +G + F I++ + G+ + Sbjct: 197 ASDALDDYLTHARGELVAHLKSGNCQAVFLTTQGGYMTRQNFWYMIKKYAKQAGIQSDLS 256 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HTLRH+FATHLL++G DLRS+Q +LGH LSTTQIYT+V + + ++++ HP Sbjct: 257 PHTLRHAFATHLLNHGADLRSVQLLLGHSDLSTTQIYTHVATAR----LQQLHEAHHP 310 >gi|83589876|ref|YP_429885.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC 39073] gi|83572790|gb|ABC19342.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC 39073] Length = 313 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 88/327 (26%), Positives = 153/327 (46%), Gaps = 20/327 (6%) Query: 6 LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65 +P + E L + +L L+ ER S T+ +Y D QF F+A ++ + Sbjct: 1 MPGVTFGEAL---EGFLLYLKGERQASPCTVDAYRADIEQFAAFVAGRAGQEAGPAAVDI 57 Query: 66 LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 ++++ Q+ S+ R L+ +++F ++L + S + + ++ L Sbjct: 58 WMVRRYLGWLNQLGQQR---SSMNRKLAALRAFYRFLLRAGQVQSSPVALLSGPRREKRL 114 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 P L+ + L+ + T + R+ AIL LY G+R++E + + ++ Sbjct: 115 PGCLSHAEMEKLL------SIPATTPLGLRDRAILETLYASGIRVAELVGMDQDDLDLVA 168 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245 R+ GKG + R+VPL KA+ Y +L P R + L + R Sbjct: 169 GYARVLGKGRRERVVPLGRYAVKALENYLHRARPELAARRIPPEPRALFLNHLGGRLTTR 228 Query: 246 YIRQ-LRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +R+ L Y+ L + HT+RH+FATHLL G DLR +Q +LGH RL+TTQIYT++ Sbjct: 229 GVRERLSHYVEKAALRRGVSPHTIRHTFATHLLEGGADLRVVQELLGHIRLATTQIYTHI 288 Query: 302 NSKNGGDWMMEIYDQTHPSITQKDKKN 328 + + E+Y Q HP ++ + N Sbjct: 289 SQSQ----LREVYRQFHPRASRDNIDN 311 >gi|313623983|gb|EFR94082.1| tyrosine recombinase XerC [Listeria innocua FSL J1-023] Length = 300 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 84/306 (27%), Positives = 147/306 (48%), Gaps = 21/306 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L ER S+ T +YE D F FL E+ IT +Q+++ ++R ++++ Sbjct: 9 KRFLDYLHSERNYSEHTSTAYENDLSDFRRFL---NEQAIT--EYQQVTFLDVRIYLTEL 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + ++ R +S ++SF +L + + TE+ + + K LP+ ++ L Sbjct: 64 KQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEMEALF 123 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 V + + + R+ IL +LYG G+R+SE + ++ + I+GKG+K R Sbjct: 124 QVVY----EDNETLTLRDRVILEVLYGTGIRVSECAGIMLSDLDTSYQAILIRGKGNKER 179 Query: 199 IVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 VP AI +Y + F + L G PL + + ++ Sbjct: 180 YVPFGAYAEDAITDYLSGRTELMTRFKKTHD---SLLINHYGDPLTTRGIRYCLTKIISK 236 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 L H LRH+FAT LL+NG D+R++Q +LGH LS+TQIYT+V ++ + Sbjct: 237 ASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH----LKST 292 Query: 314 YDQTHP 319 Y + HP Sbjct: 293 YMKHHP 298 >gi|323339878|ref|ZP_08080147.1| tyrosine recombinase XerC [Lactobacillus ruminis ATCC 25644] gi|323092751|gb|EFZ35354.1| tyrosine recombinase XerC [Lactobacillus ruminis ATCC 25644] Length = 302 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 79/294 (26%), Positives = 143/294 (48%), Gaps = 16/294 (5%) Query: 19 QNWL----QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 + WL Q L++ER S+ T+ SY D +F FL +E +++ + ++ ++ A+ Sbjct: 6 KEWLEQFKQYLKVERQYSEATITSYFEDLNEFCRFL----DESGGLKSFKDINNIDVHAY 61 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 +S +++ ++ R +S +++F ++L + + + + LP E++ Sbjct: 62 MSWLYDRELKTTTVSRKISSLRAFYRFLVRNDKADQDPFAYVSLRRHPRRLPHFFYEREM 121 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 N L + R++A+L LY G+R+SE + L Q+I ++ + GKG Sbjct: 122 -----NALFQAVCGDDPLTVRDNALLENLYSTGMRVSECVGLKMQDIDFPMRSILVHGKG 176 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLR 251 K R V + A+ Y++ + Q +F G L P + ++ Sbjct: 177 KKDRYVQFGSYLDNALKAYFEKMRTPVMEKYQKKHDFVFVNHYGDQLTPAGVSYILDKIV 236 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 L + H LRH+FATH+L+NG DLRS+Q +LGH +STTQIYT+V ++ Sbjct: 237 EKSSLTTTIHPHELRHTFATHMLANGADLRSVQELLGHSSISTTQIYTHVTPEH 290 >gi|332665189|ref|YP_004447977.1| Tyrosine recombinase xerC [Haliscomenobacter hydrossis DSM 1100] gi|332334003|gb|AEE51104.1| Tyrosine recombinase xerC [Haliscomenobacter hydrossis DSM 1100] Length = 330 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 92/312 (29%), Positives = 147/312 (47%), Gaps = 32/312 (10%) Query: 21 WLQNLE----IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 W++ E +ER L+ T+++Y D + +L E + +R T A+++ Sbjct: 33 WIRGFEAYLLLERSLAGNTIEAYTRDIGKLAEYLGM-QERNLGPADVRAEDLTTFLAWLN 91 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + + S R LS +K+F KYL + + + + S+P L+ Sbjct: 92 E---LGLSAPSQARLLSALKTFYKYLLLEEGIKDDPTALLEGPRLQRSIPSVLSYDDIQA 148 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 ++ + L T+ RN AIL +LY CGLR+SE L N+ D LRI GKG+K Sbjct: 149 MLVTIDLSTAQ-----GQRNRAILEILYACGLRVSELCDLRLSNLFLDVEFLRIIGKGNK 203 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYI 247 RIVP+ K + Y + QLP +F RG L+ + + Sbjct: 204 ERIVPIGADAIKHLNFYLE------GARKQLPQVKKGHENYVFLNRRGARLSRVMVFLIV 257 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 ++ G+ + HT RHSFATHLL G DL++IQ +LGH + TT+IYT++++ Sbjct: 258 KEAATQAGIEQIVSPHTFRHSFATHLLEGGADLKAIQDMLGHESILTTEIYTHLDT---- 313 Query: 308 DWMMEIYDQTHP 319 D++ E + HP Sbjct: 314 DYLRETILRFHP 325 >gi|282880564|ref|ZP_06289271.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1] gi|281305667|gb|EFA97720.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1] Length = 316 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 89/303 (29%), Positives = 153/303 (50%), Gaps = 17/303 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L++ER S TL +Y+ D R +L Y E QL E+ F + IG Sbjct: 19 LKLERNYSPHTLDAYQHDLR----WLLDYCENAGMHPKDMQLKDLEL--FAGQLHEHHIG 72 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S R LSG++SF ++L + + + + LP L+ ++ + +++ L Sbjct: 73 PTSQARILSGVRSFYRFLVLDGRIEQDPTELLESPRLGEHLPEVLSTEEVDMIENSIDL- 131 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 +K RN AI+ +L+ CGLR+SE ++L N+ ++ +R+ GKG K R+VP+ Sbjct: 132 ----SKPEGQRNKAIIEVLFSCGLRVSELVNLKLSNLYLEEGFVRVMGKGSKERLVPISS 187 Query: 205 -SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 ++R+ + D + + +F RGK L + +++ G+ + + H Sbjct: 188 KAIRELQYWFVDRNLMKIQQGEEDYVFLNRRGKHLTRTMILIMLKRQAVAAGITKTISPH 247 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP-SIT 322 TLRHSFAT LL G DLR+IQ++LGH + TT++Y ++++ + E Q HP ++ Sbjct: 248 TLRHSFATELLKGGADLRAIQAMLGHESIGTTELYMHIDTTT----LREEILQHHPRNMK 303 Query: 323 QKD 325 +KD Sbjct: 304 EKD 306 >gi|209551174|ref|YP_002283091.1| site-specific tyrosine recombinase XerD [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536930|gb|ACI56865.1| tyrosine recombinase XerD [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 317 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 99/328 (30%), Positives = 161/328 (49%), Gaps = 39/328 (11%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR--QLSYTEIRAFIS 76 +++L+ + ERG + TLQSYE D FL T +++R + + ++ A+++ Sbjct: 10 ESFLEMMSAERGAAVNTLQSYERDLDDVHAFL--------TGRSVRLTEAASADLAAYLA 61 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + S R L+ ++ F K+L + T+ + KK LP+ + ++ Sbjct: 62 SLARKGFKASSQARRLAAMRQFYKFLYAEGLRTDDPTGILDAPKKGRPLPKTMGVEEVGK 121 Query: 137 LVDNVLLHTSHETKWIDARNSAI--------LYLLYGCGLRISEALSLTPQNIMDDQST- 187 L+ E + DA + L LLY G+R+SE +SL P ++D + Sbjct: 122 LLSQA------EAEAGDAAPGQLQRLRMLALLELLYATGMRVSELVSL-PARVLDQEGRF 174 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNP-G 241 L I+GKG+K R+VPL S A+ Y L + N + P LF + P Sbjct: 175 LMIRGKGNKERLVPLSQSAISALKSYGRLLAAE-NAAAKNPQESPWLFPAASKEGYLPRQ 233 Query: 242 VFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 VF R ++ L GL P + H +RH+FA+HLL+NG DLR +Q +LGH +STTQIYT+ Sbjct: 234 VFARDLKNLAIRAGLTPSMISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTH 293 Query: 301 VNSKNGGDWMMEIYDQTHPSITQKDKKN 328 V + ++ QTH + ++ KK+ Sbjct: 294 VLEER-----LQQLVQTHHPLAKQAKKH 316 >gi|312963818|ref|ZP_07778289.1| Tyrosine recombinase [Pseudomonas fluorescens WH6] gi|311281853|gb|EFQ60463.1| Tyrosine recombinase [Pseudomonas fluorescens WH6] Length = 299 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 94/307 (30%), Positives = 150/307 (48%), Gaps = 23/307 (7%) Query: 17 ERQ--NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 ERQ + +L ER +S TL++Y D + L + EK + + + L +R+ Sbjct: 2 ERQLDAYCAHLRNERQVSPHTLEAYRRDLNKVLAYC-----EKQQVSSWKSLDIQALRSL 56 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 I++ Q RSL R LS ++ YL + + + K LP+ L+ +A Sbjct: 57 IARLHQQGQSSRSLSRLLSAVRGLYHYLNREGLCDHDPANGLSPPKGERRLPKTLDTDRA 116 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 L L+D + E ++ R+ AIL L Y GLR+SE L + +++ GKG Sbjct: 117 LQLLDGAV-----EDDFLAHRDQAILELFYSSGLRLSELTGLNLDQLDLADGLVQVLGKG 171 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQL-RR 252 K R++P+ R+A+ + P N Q +F +G+ L P Q ++ R Sbjct: 172 SKTRVLPVGRKAREALQLW---LPLRALANPQDDAVFISQQGRRLGPRAIQVRVKAAGER 228 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 LG L H LRHSFA+HLL + DLR++Q +LGH + TTQIYT+++ ++ + Sbjct: 229 ELGQNLHP--HMLRHSFASHLLESSQDLRAVQELLGHSDIKTTQIYTHLDFQH----LAT 282 Query: 313 IYDQTHP 319 +YD HP Sbjct: 283 VYDSAHP 289 >gi|325267781|ref|ZP_08134431.1| site-specific tyrosine recombinase XerC [Kingella denitrificans ATCC 33394] gi|324980662|gb|EGC16324.1| site-specific tyrosine recombinase XerC [Kingella denitrificans ATCC 33394] Length = 357 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/238 (30%), Positives = 119/238 (50%), Gaps = 11/238 (4%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 +L R L+ + + K++++++ S ++ +++ LPRA+ + L+D Sbjct: 123 TLARKLTVWRQYAKFVQQKEAADASPAERLKAPRQAQRLPRAIERETLQYLLDQA----P 178 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 + R+ A+ L YG GLR+SE +L +I D+ + + GKG K R VPL Sbjct: 179 EAGDALAVRDHAVAELFYGSGLRLSELCALNLHDIWLDEGWVSVHGKGGKQRHVPL---T 235 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 + +I + + LF G GK L + ++ G + T H LR Sbjct: 236 QHSIAALRAWLARRTTADSESALFTGRYGKRLTTRQIAKRLQHWAAERGSLQTITPHMLR 295 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 HSFA HLL DLR++Q +LGH LS+TQIYT +++ D + ++YDQTHP +K Sbjct: 296 HSFAGHLLQASHDLRAVQDLLGHSSLSSTQIYTKLDA----DHLAQVYDQTHPRARRK 349 >gi|300787863|ref|YP_003768154.1| integrase/recombinase XerD [Amycolatopsis mediterranei U32] gi|299797377|gb|ADJ47752.1| integrase/recombinase XerD [Amycolatopsis mediterranei U32] Length = 310 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 91/308 (29%), Positives = 143/308 (46%), Gaps = 25/308 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +L +ERG ++ TL SY D R++ L + + + I ++ + AF + R Sbjct: 15 YLDHLVVERGTARNTLDSYARDLRRYAAHL-----DGLGVAKIADVTSAHVTAFGAALRE 69 Query: 81 QKIGDRSLKRSLSG-----IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 R L S + ++ K+ +T + +R + LP+AL Sbjct: 70 GDDEHRPLAASSAARALVAVRGLHKFAHAEGLTEHNPAREVRPPTPAKRLPKALP----- 124 Query: 136 TLVDNVL--LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 VD+VL L T R+ A+L LLY G RISEA+ L ++ + T+ + GK Sbjct: 125 --VDDVLRLLETPPPDGERALRDRALLELLYSTGARISEAVGLDVDDVDGAERTVLLDGK 182 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLR 251 G K R+VP+ A+ Y L ++ + LF RG L+ + ++ Sbjct: 183 GGKQRLVPIGRPALAALHAYTVRARPALAVHGRGTAALFLNARGSRLSRQSAWQVLKDTA 242 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 G+ + HTLRHSFATHLL G D+R +Q +LGH ++TTQ+YT V + Sbjct: 243 GRAGITAVVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTVNT----LR 298 Query: 312 EIYDQTHP 319 E+Y HP Sbjct: 299 EVYATAHP 306 >gi|307730818|ref|YP_003908042.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1003] gi|307585353|gb|ADN58751.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1003] Length = 314 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 85/279 (30%), Positives = 132/279 (47%), Gaps = 15/279 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL-SYTEIRAFISKRRTQKI 83 L +E GLS+ TL +Y D R F +LA + + L +Y+ +R QK Sbjct: 33 LWLEHGLSRNTLDAYRRDLRLFSEWLAQSRNASLDTASEADLNAYSAVR--------QKD 84 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 S R LS + + + + L +R+ K+ P L+E Q L+ + Sbjct: 85 KSTSANRRLSVFRRYYGWAVREHRAQVDPTLRIRSAKQPPRFPSTLSEAQVEALLGAPDI 144 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 T + R+ +L L+Y GLR++E ++L + ++ +R+ GKG K R++P Sbjct: 145 DTP-----LGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVMGKGSKERLIPFG 199 Query: 204 PSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 I Y D P L LF R + + F I++ G+ + Sbjct: 200 EEAHGWIERYLRDARPALLGARAADALFVTNRAEGMTRQQFWNIIKRHAAAAGVHAPLSP 259 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V Sbjct: 260 HTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHV 298 >gi|307546449|ref|YP_003898928.1| site-specific tyrosine recombinase XerD [Halomonas elongata DSM 2581] gi|307218473|emb|CBV43743.1| site-specific tyrosine recombinase XerD [Halomonas elongata DSM 2581] Length = 300 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 90/281 (32%), Positives = 135/281 (48%), Gaps = 12/281 (4%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L L +ERG S TL +Y D + LA T+ + ++ +RR Sbjct: 15 LDGLWLERGASDNTLAAYRHDLNTWQARLAGLG------ATLLAPPPRALPDWLDERREA 68 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 RS R LS ++ F + + ++ + + SLP L E + L++ Sbjct: 69 GYKLRSNARLLSSLRRFYHWALGEGRIEYDPLAEIKLPRVTPSLPNTLEEGEVERLLEAP 128 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 + T + R+ A+L +LYG GLR++E + LT + Q +R++GKGDK R+VP Sbjct: 129 DVDTE-----LGLRDRAMLEVLYGAGLRVTELVGLTTDALNLRQGVVRVRGKGDKERLVP 183 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 L + Y L ++ P LF G L F I+ R G+ S Sbjct: 184 LGEEAVDWLSLYLRSARGALMRDVTRPALFPGRGDACLTRQAFWYRIKAHARSAGIDRSL 243 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + HTLRH+FATHLL++G +LR +Q +LGH LSTTQIYT+V Sbjct: 244 SPHTLRHAFATHLLNHGANLRVVQLLLGHSDLSTTQIYTHV 284 >gi|254824662|ref|ZP_05229663.1| integrase/recombinase XerC [Listeria monocytogenes FSL J1-194] gi|293593901|gb|EFG01662.1| integrase/recombinase XerC [Listeria monocytogenes FSL J1-194] Length = 300 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 86/309 (27%), Positives = 146/309 (47%), Gaps = 21/309 (6%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 K Q + L ER S T +YE D L F F E+ IT T +Q+++ ++R ++ Sbjct: 6 KLEQQFFDYLHSERNYSVNTSTAYEND---LLDFRRFLNEQAIT--TYQQVTFLDVRIYL 60 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 ++ + + ++ R +S ++SF +L + + E+ + + K LP+ ++ Sbjct: 61 TELKQKSFSRTTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEME 120 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L V + + + R+ +L +LYG G+R+SE + ++ + I+GKG+ Sbjct: 121 ALFQVVY----EDNETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGN 176 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPLNPGVFQRYIRQL 250 K R VP AI +Y P NL L G PL + + ++ Sbjct: 177 KERYVPFGVYAEDAITDY---LPERANLMSHYKKSHDALLVNHYGDPLTTRGIRYCLSKI 233 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 L H LRH+FAT LL+NG D+R++Q +LGH LS+TQIYT+V ++ + Sbjct: 234 ISKASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH----L 289 Query: 311 MEIYDQTHP 319 Y + HP Sbjct: 290 KSTYMKHHP 298 >gi|120404256|ref|YP_954085.1| site-specific tyrosine recombinase XerD [Mycobacterium vanbaalenii PYR-1] gi|119957074|gb|ABM14079.1| tyrosine recombinase XerD subunit [Mycobacterium vanbaalenii PYR-1] Length = 317 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 86/309 (27%), Positives = 145/309 (46%), Gaps = 17/309 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +L +L IERG++ TL SY D R++ LA + + + + +E +S R Sbjct: 15 QGYLDHLAIERGVAANTLSSYRRDLRRYAEHLA--SRGVTDLAGVAEADVSEF--LVSLR 70 Query: 79 RTQK------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 R + S R++ ++ ++ ITT ++ LP++L+ Sbjct: 71 RGDPDNGVVPLSAVSAARAVIAVRGLHRFAAAEGITTVDVAREVKPPTPGRRLPKSLSID 130 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + L L++ + + RN A+L LLY G RISEA+ L ++ + ++ ++G Sbjct: 131 EVLALLEAAGGDGEADGP-LTLRNRALLELLYSTGARISEAVGLDVDDVDTEARSVLLRG 189 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQL 250 KG K R++P+ A+ Y DL + +F RG L+ + ++ Sbjct: 190 KGGKQRLIPIGRPAVSALDNYLVRGRPDLARRGRGTPAIFLNARGGRLSRQSAWQVLQDA 249 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ + + H LRHSFATHLL G D+R +Q +LGH ++TTQIYT V + Sbjct: 250 AERAGITATVSPHVLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMVTVTA----L 305 Query: 311 MEIYDQTHP 319 E++ HP Sbjct: 306 REVWAGAHP 314 >gi|325956667|ref|YP_004292079.1| integrase-recombinase [Lactobacillus acidophilus 30SC] gi|325333232|gb|ADZ07140.1| integrase-recombinase [Lactobacillus acidophilus 30SC] gi|327183490|gb|AEA31937.1| integrase-recombinase [Lactobacillus amylovorus GRL 1118] Length = 302 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 89/300 (29%), Positives = 146/300 (48%), Gaps = 26/300 (8%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 + E ++ L+ ER SK T+ SY D + F +E ++++ +I+ + Sbjct: 5 MDELDQFISYLQFERYYSKKTISSYATDLHEAKKFW----QENGGFAGWKKVTERDIQIY 60 Query: 75 ISKRRTQKIGDRSLKRS-----LSGIKSFLKYLKKR---KITTESNILNMRNLKKSNSLP 126 I Q +GDR L RS +S + SF ++L +R KI ++ R KK LP Sbjct: 61 I-----QHLGDRKLARSSQARQMSSLHSFYRFLTRRRIVKIDPTQTVVIRRGEKK---LP 112 Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 + + + + D++ K + RN A+ L Y G+R+SE LT I D Sbjct: 113 QFFYQPEIKQVFDSL-----QGDKPLTVRNLALFELFYATGMRVSEVSGLTLPQIDLDLK 167 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQR 245 T+ + GKG+K R V + ++L Y + P L + +F +GK ++ Q Sbjct: 168 TILVHGKGNKDRYVAFDDRTKNSLLNYLNNARPRLLKDKDEQHVFLSNQGKAISDRGIQY 227 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 +++ G+ H LRH+FAT +L+NG D+RS+Q +LGH LS TQIYT+V + + Sbjct: 228 VMQKTFNQAGISGKVHPHELRHTFATAMLNNGADMRSVQELLGHSSLSATQIYTHVTTAH 287 >gi|33152918|ref|NP_874271.1| site-specific tyrosine recombinase XerC [Haemophilus ducreyi 35000HP] gi|71153410|sp|Q7VKG8|XERC_HAEDU RecName: Full=Tyrosine recombinase xerC gi|33149143|gb|AAP96660.1| integrase/recombinase XerC [Haemophilus ducreyi 35000HP] Length = 304 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 90/311 (28%), Positives = 158/311 (50%), Gaps = 23/311 (7%) Query: 17 ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 + Q + L IE+ +S TL +Y+ RQ L +I + + + +R ++ Sbjct: 11 QAQAYWDFLRIEKQVSPHTLTNYQ---RQLLAISEMLIAAQI--DDWQAVDASVVRWILT 65 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + Q +G +S+ L ++ + YL +R + + ++ K + LP+ ++ ++ Sbjct: 66 QSHKQGLGAKSIGLRLVVLRQWFAYLVQRHYVKVNPAVGIKAPKVARHLPKNIDAERMGQ 125 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA--LSLTPQNIMDDQSTLRIQGKG 194 L+D + + D R+ A++ L+Y GLR++E L L +++D + +R+ GKG Sbjct: 126 LLDVEVDEPA------DIRDLAMMELMYSSGLRLAELQRLDLGDMDLID--AEVRLLGKG 177 Query: 195 DKIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 +K RIVP+ A+ + + P F+ N LF RG L+ Q +++ Sbjct: 178 NKERIVPIGSRALTALQAWLTVRPSFNPQDN---ALFLNKRGGRLSHRSIQLAMQKWGER 234 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 GL H LRHSFATHLL DLR++Q +LGH LSTTQIYT+++ ++ + +I Sbjct: 235 QGLATRLHPHKLRHSFATHLLEASTDLRAVQELLGHSSLSTTQIYTHLDFQH----LAKI 290 Query: 314 YDQTHPSITQK 324 YD +HP +K Sbjct: 291 YDASHPRARRK 301 >gi|88813548|ref|ZP_01128781.1| tyrosine recombinase [Nitrococcus mobilis Nb-231] gi|88789177|gb|EAR20311.1| tyrosine recombinase [Nitrococcus mobilis Nb-231] Length = 313 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 100/327 (30%), Positives = 155/327 (47%), Gaps = 32/327 (9%) Query: 9 IVSFELLKERQ--------------NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT 54 +++FE++ ER +L L +ERGLS TL +Y D L+ A + Sbjct: 1 MLAFEVMPERAECNSLAADEERLIGGFLDTLWMERGLSAHTLSAYRSD----LVAYARWL 56 Query: 55 EEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114 E T + + A++++R + R+ R LS ++ F + + E Sbjct: 57 ERHGT--GLLRAGRDGPTAYLAERVRSGVRPRTTARLLSTLRCFYRLQLRDGRLAEDPTA 114 Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174 + + K LP L+E++ V+ +L + I R+ +L + Y GLR+SE + Sbjct: 115 QLDSPKLDRPLPATLSEQE----VEELLAAPDCQNP-IGLRDRTMLEVAYATGLRVSELV 169 Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRG 232 SL + Q RI GK DK R+VPL +A LE Y D L LF Sbjct: 170 SLRLGQLNLRQGMARIIGKADKERLVPLGDEA-QAWLEDYLQDARSVLLTHPSASVLFIT 228 Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 RG+ + F I+ + G+ + HTLRHSFATHLL++G DLR +Q +LGH L Sbjct: 229 RRGEAMTRQAFWYRIKYYAQVAGISKPLSPHTLRHSFATHLLNHGADLRVVQLLLGHSDL 288 Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHP 319 +TTQIYT+V + + E++ + HP Sbjct: 289 TTTQIYTHVARQR----LQELHARHHP 311 >gi|310815561|ref|YP_003963525.1| phage integrase family protein [Ketogulonicigenium vulgare Y25] gi|308754296|gb|ADO42225.1| phage integrase family protein [Ketogulonicigenium vulgare Y25] Length = 313 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 85/299 (28%), Positives = 144/299 (48%), Gaps = 27/299 (9%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR- 78 +L+ E G ++ TL +Y D + F +LA K+ T+ Q + F + + Sbjct: 7 TFLEAQAAELGAARNTLLAYGRDLQDFAAWLA---RRKLDFLTLDQADIEDYLTFCADQG 63 Query: 79 --RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + + + R LS ++ ++ T++ + ++ K+ +LP LNE + Sbjct: 64 LSPSTRARRPTRARRLSAVRQLFRFAFDEGWRTDNPSIRLKGATKARTLPETLNEDEVDR 123 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L+D ++ + RN+ +L LLY G+R+SE ++L D L ++GKG K Sbjct: 124 LLDAARAASAARPR-EALRNTCLLELLYATGMRVSELVTLPVAAARGDPRMLLVRGKGGK 182 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-------------LNPGVF 243 R+VPL P R A++E+ + + R G+P L F Sbjct: 183 ERLVPLSPPARTAMVEWL------AQRDTEQEALRKAGGQPSRFLFPSHGADGHLTRQHF 236 Query: 244 QRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 ++ L G+ P + H LRH+FATHLL+NG DLR+IQ++LGH ++TT+IYT+V Sbjct: 237 LVILKDLAVLAGISPARVSPHKLRHAFATHLLANGADLRAIQTMLGHADIATTEIYTHV 295 >gi|254466241|ref|ZP_05079652.1| phage integrase [Rhodobacterales bacterium Y4I] gi|206687149|gb|EDZ47631.1| phage integrase [Rhodobacterales bacterium Y4I] Length = 313 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 94/294 (31%), Positives = 145/294 (49%), Gaps = 24/294 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +L E G S+ TL +Y D + +L + + T S +I A++ Sbjct: 13 TFLDAQAAETGASQNTLLAYGRDLKDLTAWLEHRSLDFSTA------SQDDIEAYLISCD 66 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q + + R LS +K ++ + ++ + +R + LP+ L + VD Sbjct: 67 AQGLARSTRARRLSAVKQIYRFAFEEGWRQDNPAIQIRGPGREKRLPKTLE----VIEVD 122 Query: 140 NVLLHTSHETKWIDA---RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 LL + +T +A RN+ ++ LLY G+R++E +SL D L I GKG K Sbjct: 123 R-LLEAARQTGRSEADRLRNTCLMELLYATGMRVTELVSLPVSAARGDPRMLLILGKGGK 181 Query: 197 IRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGI---RGKP--LNPGVFQRYIR 248 R+VPL P R+A+ ++ D + L P R + RGK L F I+ Sbjct: 182 ERMVPLSPPAREALAQWLLVRDAAEDERELKGN-PASRFLFPSRGKSGHLTRHRFYLLIK 240 Query: 249 QLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +L GL P T HTLRH+FATHLL+NG DLR+IQ++LGH ++TT+IYT+V Sbjct: 241 ELAVTGGLSPDKVTPHTLRHAFATHLLANGADLRAIQALLGHADIATTEIYTHV 294 >gi|192288937|ref|YP_001989542.1| tyrosine recombinase XerD [Rhodopseudomonas palustris TIE-1] gi|192282686|gb|ACE99066.1| tyrosine recombinase XerD [Rhodopseudomonas palustris TIE-1] Length = 339 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 87/295 (29%), Positives = 140/295 (47%), Gaps = 25/295 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L + E+G S TL +Y D FL + +++I + +R++++ Sbjct: 37 FLDMIAAEQGASANTLDAYRRDLADLSHFL---SRRRLSIGSA---DTAALRSYLADLDN 90 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + S+ R LS ++ ++L +I + + K+ SLP+ L+ + VD Sbjct: 91 RGFATSSVARRLSALRHLFRFLLSERIRADDPAAILAGPKRGRSLPKVLS----IADVDR 146 Query: 141 VLLHTSHETKWID-------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 +L E + AR + +L +LY GLR+SE +SL D + ++GK Sbjct: 147 LLACARQEIDAAEGGARLRAARLNCLLEVLYATGLRVSELVSLPLSAARRDARMIVVRGK 206 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR------GIRGKPLNPGVFQRYI 247 GDK R+VPL ++A+ Y + P + G G L F R + Sbjct: 207 GDKERLVPLNAGAKQAMARYLEEVAVATKETKGAPASKWLFPSFGESGY-LTRQHFARDL 265 Query: 248 RQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + L GL P + H LRH+FA+HLL NG DLR +Q++LGH +STTQIYT+V Sbjct: 266 KDLAARAGLSPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHV 320 >gi|149908511|ref|ZP_01897173.1| tyrosine recombinase [Moritella sp. PE36] gi|149808345|gb|EDM68282.1| tyrosine recombinase [Moritella sp. PE36] Length = 333 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 93/321 (28%), Positives = 162/321 (50%), Gaps = 23/321 (7%) Query: 10 VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT--IQTIRQLS 67 + +LLK + +L+ + ER LS T+++Y R+ LI A E+ +T I R L Sbjct: 27 LPVQLLKPIERFLRYITSERQLSLHTVRNY----RRHLILFA---EQMLTLPITEWRALD 79 Query: 68 YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127 +++R + + RSL LS ++SF YL + T + + ++ LP+ Sbjct: 80 ASQVRKLATLNHKLGLSPRSLATKLSALRSFCDYLVLQGDLTANPAKGVSAPRQHKPLPK 139 Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMD 183 L+ + N LL S+ + D R+ A++ L+Y GLR+ E ++L ++ Sbjct: 140 NLDVDEI-----NQLLSVSNAVESDDPFLVLRDKAMMELMYSAGLRLDELVNLDLTDVKL 194 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 + T+R+ GKG+K R +P+ S+ L+ + + N Q LF + ++ Sbjct: 195 REKTMRVIGKGNKQRQLPI-GSIAITALQAWLAVRGEYADNAQPALFVSQLRRRISHRSV 253 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 Q + + + L H LRHSFATH+L + GDLR++Q +LGH +STTQIYT+++ Sbjct: 254 QSRMAKWGQQQTLTSHVNPHKLRHSFATHMLESSGDLRAVQELLGHANISTTQIYTSLDF 313 Query: 304 KNGGDWMMEIYDQTHPSITQK 324 ++ + ++YD HP +K Sbjct: 314 QH----LAKVYDAAHPRAKKK 330 >gi|161729088|ref|NP_220744.2| site-specific tyrosine recombinase XerD [Rickettsia prowazekii str. Madrid E] gi|34223091|sp|Q9ZDG8|XERD_RICPR RecName: Full=Tyrosine recombinase xerD gi|292571969|gb|ADE29884.1| Tyrosine recombinase XerD [Rickettsia prowazekii Rp22] Length = 311 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 95/298 (31%), Positives = 152/298 (51%), Gaps = 28/298 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT--EIRAFISKR 78 +L+ L ER LSK ++ SY+ D F +LA Q I +L+ T IR +I Sbjct: 7 FLEMLLAERALSKNSILSYKRDLLDFQHYLA--------AQKISELNITTGNIRKWIEYL 58 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + RS+ R +S IKS+ +L T + +LN+ K N LP L+ Q + Sbjct: 59 ASNNLHARSINRKISTIKSYYAFLISENHTKFNPVLNIDLPKYQNKLPIILSIDQ----I 114 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-------LRIQ 191 +L + S + R +A++ LLY GLR+SE +SL +I+ + ++ + Sbjct: 115 KLILEYCSKDNTPEGIRLNAMINLLYASGLRVSELVSLKLADILTNNTSKGTVRKIFSVL 174 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-----IQLPLFRGIRGKPLNPGVFQRY 246 GKG+K R++ + +I++Y ++ F +N I L + G + F Sbjct: 175 GKGNKERVIVINDQAVLSIIKYLEIRDFFINKAKSKNLIYLFPSSAVAGY-MTRQNFAIL 233 Query: 247 IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 ++ + Y GL P + H LRHSFA+HLL G DLR IQ +LGH +STTQIYT++++ Sbjct: 234 LKSVALYTGLNPEHVSPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLHT 291 >gi|39933583|ref|NP_945859.1| tyrosine recombinase XerD [Rhodopseudomonas palustris CGA009] gi|39647429|emb|CAE25950.1| site-specific integrase/recombinase XerD [Rhodopseudomonas palustris CGA009] Length = 338 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 91/295 (30%), Positives = 143/295 (48%), Gaps = 26/295 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L + E+G S TL +Y D FL + +++I + +R++++ Sbjct: 37 FLDMIAAEQGASANTLDAYRRDLADLSHFL---SRRRLSIGSA---DTAALRSYLADLDN 90 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + S+ R LS ++ ++L +I + + K+ SLP+ L+ + VD Sbjct: 91 RGFATSSVARRLSALRHLFRFLLSERIRADDPAAILAGPKRGRSLPKVLS----IADVDQ 146 Query: 141 VLLHTSHETKWID-------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 +L E + AR + +L +LY GLR+SE +SL D + ++GK Sbjct: 147 LLACARQEIDAAEGGARLRAARLNCLLEVLYATGLRVSELVSLPLSAARRDARMIVVRGK 206 Query: 194 GDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYI 247 GDK R+VPL ++A+ Y + P D L P F G G L F R + Sbjct: 207 GDKERLVPLNAGAKQAMARYLEEMAAAKAPKDGPAPKWLFPSF-GESGY-LTRQHFARDL 264 Query: 248 RQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + L GL P + H LRH+FA+HLL NG DLR +Q++LGH +STTQIYT+V Sbjct: 265 KDLAARAGLAPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHV 319 >gi|223986264|ref|ZP_03636278.1| hypothetical protein HOLDEFILI_03588 [Holdemania filiformis DSM 12042] gi|223961759|gb|EEF66257.1| hypothetical protein HOLDEFILI_03588 [Holdemania filiformis DSM 12042] Length = 304 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 83/284 (29%), Positives = 136/284 (47%), Gaps = 13/284 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + I+ S+ T+ Y D ++ FLA + I I Q+ + ++ + Sbjct: 8 RQYLIYISIQFPKSEKTIAGYRNDLSRYFQFLA-----QKEIDRIDQIDSAMLEEYV-RV 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S+ +++ I+ F ++L R + L+++ SLP + + Sbjct: 62 LARDHAAASVNHAITAIRGFHQFLAFR-FDELDPAEYLEQLQRTQSLPVYCTRDE----I 116 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + ++ H K D R AI LLYGCGLR+SE +LT + + LRI GKG+K R Sbjct: 117 EKIMAQFGHSPK--DIRWHAIAELLYGCGLRVSECAALTMNQVDLELGMLRIWGKGNKER 174 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +VP+ K + EY D LF GK + I+ + G+ Sbjct: 175 LVPMPKQTIKIVREYVDTVRPLYQKKPTSWLFITRLGKKTTTASIESMIKSVCIQAGIQK 234 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 T H LRH++ATH+L G DLRS+Q +LGH ++TTQIYT+++ Sbjct: 235 PITPHKLRHTYATHMLEGGADLRSVQELLGHSDITTTQIYTHID 278 >gi|114570821|ref|YP_757501.1| phage integrase family protein [Maricaulis maris MCS10] gi|114341283|gb|ABI66563.1| phage integrase family protein [Maricaulis maris MCS10] Length = 321 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 86/296 (29%), Positives = 140/296 (47%), Gaps = 33/296 (11%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L + ERG S TL +Y R+ L+ +A +++ + + + ++ ++ Sbjct: 19 FLDMMAAERGASPNTLDAY----RRDLVDVA----ARLSSRNLEAATTPDLEHVLASMAA 70 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + R LS IK F ++L + ++ +R K+ LP+ L E VD Sbjct: 71 DGLAASTAARRLSAIKRFYRFLLSDGVREDNPATPLRAPKQGRPLPKILTEDD----VDR 126 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + S + R A++ LLY GLR++E +SL + + ++I GKG + R+V Sbjct: 127 LFDAASGLSGPAGLRTRALMELLYAGGLRVTELVSLPLGAFVRAERCIQITGKGGRERLV 186 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP--------------LNPGVFQRY 246 PL + +A+ Y + LP+ R GK L F + Sbjct: 187 PLTEAALEAVAAY------KVVREAHLPVDRTKSGKAARYLFPSRTAKTGHLTRERFAQI 240 Query: 247 IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + +L GL P + H LRH+FATHLL+ G DLRS+Q +LGH +STTQIYT+V Sbjct: 241 LSELTLAAGLDPAKVSPHVLRHAFATHLLARGADLRSVQILLGHADVSTTQIYTHV 296 >gi|3860920|emb|CAA14820.1| INTEGRASE/RECOMBINASE XERD (xerD) [Rickettsia prowazekii] Length = 335 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 95/298 (31%), Positives = 152/298 (51%), Gaps = 28/298 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT--EIRAFISKR 78 +L+ L ER LSK ++ SY+ D F +LA Q I +L+ T IR +I Sbjct: 31 FLEMLLAERALSKNSILSYKRDLLDFQHYLA--------AQKISELNITTGNIRKWIEYL 82 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + RS+ R +S IKS+ +L T + +LN+ K N LP L+ Q + Sbjct: 83 ASNNLHARSINRKISTIKSYYAFLISENHTKFNPVLNIDLPKYQNKLPIILSIDQ----I 138 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-------LRIQ 191 +L + S + R +A++ LLY GLR+SE +SL +I+ + ++ + Sbjct: 139 KLILEYCSKDNTPEGIRLNAMINLLYASGLRVSELVSLKLADILTNNTSKGTVRKIFSVL 198 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-----IQLPLFRGIRGKPLNPGVFQRY 246 GKG+K R++ + +I++Y ++ F +N I L + G + F Sbjct: 199 GKGNKERVIVINDQAVLSIIKYLEIRDFFINKAKSKNLIYLFPSSAVAGY-MTRQNFAIL 257 Query: 247 IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 ++ + Y GL P + H LRHSFA+HLL G DLR IQ +LGH +STTQIYT++++ Sbjct: 258 LKSVALYTGLNPEHVSPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLHT 315 >gi|325204823|gb|ADZ00277.1| tyrosine recombinase XerC [Neisseria meningitidis M01-240355] Length = 301 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 126/244 (51%), Gaps = 11/244 (4%) Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 +G+R+L R LS + + +L KR + +++ K+ +P+AL ++ ++ +L Sbjct: 69 LGERTLARKLSSWRQYCVWLVKRGLMHADPTADIKPPKQPERIPKALPQE----CLNQML 124 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202 ++ + R+ A+ L+YG GLR+SE L ++ D+ +R+ GKG K R VPL Sbjct: 125 DLPVDDSDALALRDHALFELMYGSGLRLSEIHGLDTGDVWLDEGWVRVTGKGRKQRQVPL 184 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 +A+ Y P + LF G G L+ Q+ + G + Sbjct: 185 TGKSVEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLESWAAQNGDGRHISP 241 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322 H +RHS+A+HLL + D+R++Q +LGH LSTTQIYT ++ D + +YD+ HP Sbjct: 242 HMMRHSYASHLLQSSRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAHPRAK 297 Query: 323 QKDK 326 +++K Sbjct: 298 RQEK 301 >gi|307700994|ref|ZP_07638019.1| site-specific tyrosine recombinase XerD [Mobiluncus mulieris FB024-16] gi|307613989|gb|EFN93233.1| site-specific tyrosine recombinase XerD [Mobiluncus mulieris FB024-16] Length = 319 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 90/310 (29%), Positives = 149/310 (48%), Gaps = 22/310 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK- 77 Q++L L +ERG S T+ +Y+ D ++++ +L + T+ Q++ ++ F+ Sbjct: 18 QDFLNYLSVERGASPHTIAAYQRDLQRYVAYLQILGRD-----TLAQVTEIDLEGFVRAL 72 Query: 78 ----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 +G S++R L+ +S+ +YL + S N+ + K LPR L E Sbjct: 73 GDGFASFPPLGSTSVRRCLAAARSWHRYL----FDSGSLGANVASSVKPAKLPRRLPETL 128 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQ 191 L ++ +L S R+ A+L LY G RISEA++L +I + + +R+ Sbjct: 129 NLEEMEALLAAASSPGDSNSLRDRALLEFLYASGARISEAMNLVLDDIDFETEPALVRLF 188 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQ 249 GKG K RI L +A+ Y L Q +F GKP++ I+ Sbjct: 189 GKGRKERISMLGHQACQALQAYLVRVRPTLAEKGQSRGRVFLNTYGKPMSRQTAWAIIQA 248 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 + + HTLRH FATHLL G D+R +Q +LGH ++TT+IYT V+ + Sbjct: 249 AAKRAQIDRPVHPHTLRHCFATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQ----M 304 Query: 310 MMEIYDQTHP 319 ++E+Y HP Sbjct: 305 LLEVYASAHP 314 >gi|221199203|ref|ZP_03572247.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2M] gi|221206600|ref|ZP_03579612.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2] gi|221173255|gb|EEE05690.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2] gi|221180488|gb|EEE12891.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2M] Length = 316 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 87/297 (29%), Positives = 141/297 (47%), Gaps = 19/297 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E GL++ TL +Y D F +LA + + T + +I+ RR K Sbjct: 35 LWLEHGLARNTLDAYRRDLTLFSQWLAATHDAALDAA-----DETMLTGYIAARRDGKA- 88 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S R LS + + + + + L + + K++ P L+E Q L+ + Sbjct: 89 -TSSNRRLSVFRRYYGWAVREHRASADPTLRIASAKQAARFPSTLSEAQVEALLGAPDIA 147 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 T + R+ +L L+Y GLR+SE ++L + ++ +R+ GKG K R+VP Sbjct: 148 TP-----LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPF-G 201 Query: 205 SVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 V +E Y + P L LF RG + F I++ + + + Sbjct: 202 EVAHGWIERYLREARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSP 261 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V + + ++ Q HP Sbjct: 262 HTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARER----LRTLHAQHHP 314 >gi|225375588|ref|ZP_03752809.1| hypothetical protein ROSEINA2194_01213 [Roseburia inulinivorans DSM 16841] gi|225212567|gb|EEG94921.1| hypothetical protein ROSEINA2194_01213 [Roseburia inulinivorans DSM 16841] Length = 286 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 79/285 (27%), Positives = 140/285 (49%), Gaps = 12/285 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 N++Q L E+ S+ T SYE D ++ +++L + ++I T L+ +++ + Sbjct: 8 HNFIQYLHQEKQTSENTEVSYERDLKKMILYLTAHGVDRIDAVTPEVLN-----SYVIEL 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + ++ RS++ +K+F Y + + T+ ++ K P L +Q Sbjct: 63 EQSGLKPATVSRSVASMKAFFHYEELEQRTSADPAFELKAPKVEKKAPTILTTEQT---- 118 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 N LL + R+ A+L LLY G+R+SE +SL ++ D + K R Sbjct: 119 -NRLLAQPKDNSAKGLRDKAMLELLYATGIRVSELISLKLTDVNFDTGYITCV-DSHKGR 176 Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 ++P+ P + A++ Y D P + + LF G ++ F + I+ + G+ Sbjct: 177 MIPMTPVAKDALVRYIRDGRPQLVKDENSIWLFTNCSGDAMSRQGFWKLIKSYGKRAGIE 236 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 T H LRHSFA HL+ +G DL+S+Q ILGH +STTQ+Y ++N Sbjct: 237 SEITPHMLRHSFAAHLVCSGADLKSVQEILGHSDISTTQMYAHMN 281 >gi|46907504|ref|YP_013893.1| integrase/recombinase XerC [Listeria monocytogenes serotype 4b str. F2365] gi|226223880|ref|YP_002757987.1| integrase/recombinase [Listeria monocytogenes Clip81459] gi|254852669|ref|ZP_05242017.1| integrase/recombinase XerC [Listeria monocytogenes FSL R2-503] gi|254932406|ref|ZP_05265765.1| integrase/recombinase XerC [Listeria monocytogenes HPB2262] gi|255520259|ref|ZP_05387496.1| integrase/recombinase [Listeria monocytogenes FSL J1-175] gi|300765313|ref|ZP_07075297.1| integrase/recombinase XerC [Listeria monocytogenes FSL N1-017] gi|71153411|sp|Q720E4|XERC_LISMF RecName: Full=Tyrosine recombinase xerC gi|259710432|sp|C1L2I5|XERC_LISMC RecName: Full=Tyrosine recombinase xerC gi|46880772|gb|AAT04070.1| integrase/recombinase XerC [Listeria monocytogenes serotype 4b str. F2365] gi|225876342|emb|CAS05051.1| Putative integrase/recombinase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605987|gb|EEW18595.1| integrase/recombinase XerC [Listeria monocytogenes FSL R2-503] gi|293583963|gb|EFF95995.1| integrase/recombinase XerC [Listeria monocytogenes HPB2262] gi|300513996|gb|EFK41059.1| integrase/recombinase XerC [Listeria monocytogenes FSL N1-017] gi|328468566|gb|EGF39566.1| tyrosine recombinase xerC [Listeria monocytogenes 1816] gi|328475121|gb|EGF45905.1| tyrosine recombinase xerC [Listeria monocytogenes 220] gi|332311722|gb|EGJ24817.1| Tyrosine recombinase xerC [Listeria monocytogenes str. Scott A] Length = 300 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 86/309 (27%), Positives = 147/309 (47%), Gaps = 21/309 (6%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 K Q + L ER S T +YE D L F F E+ IT T +Q+++ ++R ++ Sbjct: 6 KLEQQFFDYLHSERNYSVNTSTAYEND---LLDFRRFLNEQAIT--TYQQVTFLDVRIYL 60 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 ++ + + ++ R +S ++SF +L + + E+ + + K LP+ ++ Sbjct: 61 TELKQKSFSRTTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEME 120 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L V + + + R+ +L +LYG G+R+SE + ++ + I+GKG+ Sbjct: 121 ALFQVVY----EDNETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGN 176 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPLNPGVFQRYIRQL 250 K R VP AI +Y P NL + L G PL + + ++ Sbjct: 177 KERYVPFGVYAEDAITDY---LPERANLMSRYKKSHDALLVNHYGDPLTTRGIRYCLSKI 233 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 L H LRH+FAT LL+NG D+R++Q +LGH LS+TQIYT+V ++ + Sbjct: 234 ISKASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH----L 289 Query: 311 MEIYDQTHP 319 Y + HP Sbjct: 290 KSTYMKHHP 298 >gi|192362212|ref|YP_001983742.1| tyrosine recombinase XerC [Cellvibrio japonicus Ueda107] gi|190688377|gb|ACE86055.1| tyrosine recombinase XerC [Cellvibrio japonicus Ueda107] Length = 313 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 84/297 (28%), Positives = 142/297 (47%), Gaps = 16/297 (5%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87 E+ S T +Y D +F + IQ + ++ +R ++ Q + +S Sbjct: 22 EKQFSPHTQSNYARDLEKFQRYC-----RDAGIQQLTEVDARAVRMAVASLHRQGLAGKS 76 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 L+R LS ++ F +Y + + + + K LP+ L+ Q V Sbjct: 77 LQRWLSSLRGFFQYAIRHHWMSINPADGIAAPKTPKKLPKTLDVDQTAQFV------AVE 130 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207 +I R+ A+L L+Y GLR++E SL +I + + + GKG K R +P+ SV Sbjct: 131 GDDFIHKRDRALLELIYSSGLRLAEVTSLNLGDIDWGDAMVTVTGKGSKTRTLPV-GSVA 189 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 A L+ + + LF RGK ++ Q ++QL G+ H LRH Sbjct: 190 IAALKDWLSQREQYAPASEPALFITQRGKRISHRAVQLRLQQLSVQQGMDNPVHPHMLRH 249 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 SFA+H+L + GDLR +Q +LGH +STTQIYT+++ ++ + ++YD+ HP +K Sbjct: 250 SFASHMLESSGDLRLVQELLGHANISTTQIYTHLDFQH----LAKVYDKAHPRAGRK 302 >gi|158320625|ref|YP_001513132.1| tyrosine recombinase XerD [Alkaliphilus oremlandii OhILAs] gi|158140824|gb|ABW19136.1| tyrosine recombinase XerD [Alkaliphilus oremlandii OhILAs] Length = 294 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 89/297 (29%), Positives = 149/297 (50%), Gaps = 18/297 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L+ E+ LSK TL+ Y+ D Q+LI++ + + Q + + T + ++ + Sbjct: 12 LDQEKKLSKNTLECYKRDIVQYLIYI-----DHVVNQDLFLTNKTTVITYLLHLQKSGKS 66 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 ++ R+L+ I+ F K+L K +N+ K P L ++ ++LL Sbjct: 67 TATISRNLASIRCFYKFLLLNKRMDYDPTINLEAPKIERKTPMTLTLEEV-----DLLLS 121 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 E AR+ A+L LLY G+R++E +SL +++ + +R G K R +P Sbjct: 122 QPLEITDKGARDKAMLELLYATGIRVTELISLNLEDVNLNLGFIRCHN-GSKERFIPTGS 180 Query: 205 SVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 +++ +Y + F L + LF GKPL+ F + I+ + S T Sbjct: 181 IALESLTKYIENHRASF-LKDPSERSLFLNYYGKPLSRQGFWKIIKAYTEQSNIEKSITP 239 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 +TLRHSFATHL+ NG DL+S+Q +LGH +STTQIY V + + E+Y++THP Sbjct: 240 NTLRHSFATHLIQNGADLKSVQEMLGHADISTTQIYAYV----MKNRIKEVYNKTHP 292 >gi|325917722|ref|ZP_08179910.1| tyrosine recombinase XerD subunit [Xanthomonas vesicatoria ATCC 35937] gi|325536051|gb|EGD07859.1| tyrosine recombinase XerD subunit [Xanthomonas vesicatoria ATCC 35937] Length = 337 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 92/313 (29%), Positives = 155/313 (49%), Gaps = 31/313 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L E+G+++ TL SY D L LA + + + + + + ++ R Sbjct: 42 ERFLDRLWAEQGVARQTLDSYRRD----LEGLARWRDG--AGGGLLGIDRSVLFDYLRWR 95 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + RS R LS +++F + + ++ + + SLP+AL E Q + Sbjct: 96 TEARYSPRSNARLLSTLRAFYGLCLRDGVRSDDPTALLDPPRLPRSLPKALTETQ----I 151 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D +L +T + R+ A+L L+Y GLR+SE ++L + Q LR+ GKG K R Sbjct: 152 DALLAAPDIQTP-LGLRDRAMLELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKER 210 Query: 199 IVPL-----------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 +VPL L R + ++ + D Q+PLF +P + F + Sbjct: 211 LVPLGEESQHWLERYLHEARPLLADHKAVAAVD----GQVPLFIDAARQPPSRQHFWALV 266 Query: 248 RQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 ++ G+ P + + H LRHSFATHLL++G DLR++Q +LGH LSTTQIYT V ++ Sbjct: 267 KRYAAVAGIDPATVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQH- 325 Query: 307 GDWMMEIYDQTHP 319 + +++ + HP Sbjct: 326 ---LQKLHAKHHP 335 >gi|222087381|ref|YP_002545918.1| tyrosine site-specific integrase/recombinase protein [Agrobacterium radiobacter K84] gi|221724829|gb|ACM27985.1| tyrosine site-specific integrase/recombinase protein [Agrobacterium radiobacter K84] Length = 319 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 98/321 (30%), Positives = 157/321 (48%), Gaps = 23/321 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ + ERG + TLQSYE D FL +E + + + ++ A++S Sbjct: 11 EAFLEMMSAERGAAVNTLQSYERDLDDLHSFL---SERSVRLT---EAGSNDLGAYLSGL 64 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q S R LS ++ F K+L + T+ + KK +LP+ + ++ L+ Sbjct: 65 SRQGFKPSSQARRLSAMRQFYKFLYAEGLRTDDPTGILDAPKKGRALPKTMGVEEVTRLL 124 Query: 139 DNVLLHTSHET--KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-LRIQGKGD 195 + E+ + R +L LLY G+R+SE ++L P ++D + L I+GKG+ Sbjct: 125 TQAEKEAAEESPDQLQRLRMLVLLELLYATGMRVSELVTL-PAKVLDQEGRFLMIRGKGN 183 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP------LFRGIRGKPLNP-GVFQRYIR 248 K R+VPL S A L+ Y + N + P LF + P VF R ++ Sbjct: 184 KERLVPLSQSA-IAALKTYGKLQTQVAANTKQPAPESAWLFPAASKQGYLPRQVFARDLK 242 Query: 249 QLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 L GL P + H +RH+FA+HLL+NG DLR +Q +LGH +STTQIYT+V + Sbjct: 243 DLAIRAGLTPSLISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER-- 300 Query: 308 DWMMEIYDQTHPSITQKDKKN 328 + ++ HP Q K+ Sbjct: 301 --LHQLVQMHHPLAKQGKKQE 319 >gi|91785030|ref|YP_560236.1| site-specific tyrosine recombinase XerD [Burkholderia xenovorans LB400] gi|91688984|gb|ABE32184.1| Putative phage integrase/recombinase family protein [Burkholderia xenovorans LB400] Length = 311 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 87/296 (29%), Positives = 140/296 (47%), Gaps = 17/296 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E GLS+ TL +Y D R F +LA ++ T S ++ A+ + R QK Sbjct: 30 LWLEHGLSRNTLDAYRRDLRLFCEWLA--QSRNASLDTA---SEADLNAYSAAR--QKDK 82 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S R LS + + + + + +R+ K+ P L E Q L+ + Sbjct: 83 STSANRRLSVFRRYYGWAVREHRAKVDPTVRIRSAKQPPRFPSTLTEAQVEALLGAPDVD 142 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 T + R+ +L L+Y GLR++E ++L + ++ +R+ GKG K R++P Sbjct: 143 TP-----LGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVMGKGSKERLIPFGE 197 Query: 205 SVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 I Y + P L LF R + + F I++ G+ + H Sbjct: 198 EAHGWIERYLREARPALLGARATDALFVTGRAEGMTRQQFWNIIKRHAAAAGVNAPLSPH 257 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 TLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V + + ++ Q HP Sbjct: 258 TLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARER----LKSLHAQHHP 309 >gi|21957074|gb|AAM83976.1|AE013639_5 site-specific recombinase [Yersinia pestis KIM 10] Length = 308 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 85/309 (27%), Positives = 151/309 (48%), Gaps = 17/309 (5%) Query: 11 SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70 S L + + +L+ L IER LS LT+ SY RQ + E++ + + L + Sbjct: 10 SASLAPQVEAFLRYLSIERQLSPLTVTSYR---RQLSALMEI--GEQMGLAHWQTLDAAQ 64 Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 +R+ +S+ + + SL LS ++SFL +L + + + + + LP+ ++ Sbjct: 65 VRSLVSRSKRAGLHASSLALRLSALRSFLNWLVSQGVLPANPAKGVSTPRSGRHLPKNID 124 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 + L+ L + R+ A+L ++YG GLR+SE + + +++ + + Sbjct: 125 VDEVNKLLSIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGMNCKHVDLASGDVWV 178 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 GKG K R VPL + + + L +L +F GK ++ Q+ + Sbjct: 179 MGKGSKERKVPLGKTAVTWLQHW--LALRELFEPQDDAIFLANTGKRISARNVQKRFAEW 236 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ H LRHSFATH+L + GDLR++Q +LGH L+TTQIYT+++ ++ + Sbjct: 237 GVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----L 292 Query: 311 MEIYDQTHP 319 +YD HP Sbjct: 293 ATVYDAAHP 301 >gi|306818595|ref|ZP_07452318.1| tyrosine recombinase XerD [Mobiluncus mulieris ATCC 35239] gi|304648768|gb|EFM46070.1| tyrosine recombinase XerD [Mobiluncus mulieris ATCC 35239] Length = 319 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 90/310 (29%), Positives = 149/310 (48%), Gaps = 22/310 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK- 77 Q++L L +ERG S T+ +Y+ D ++++ +L + T+ Q++ ++ F+ Sbjct: 18 QDFLNYLSVERGASPHTIAAYQRDLQRYVAYLQILGRD-----TLAQVTEIDLEGFVRAL 72 Query: 78 ----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 +G S++R L+ +S+ +YL + S N+ + K LPR L E Sbjct: 73 GDGFASFPPLGSTSVRRCLAAARSWHRYL----FDSGSLGANVASSVKPAKLPRRLPETL 128 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQ 191 L ++ +L S R+ A+L LY G RISEA++L +I + + +R+ Sbjct: 129 NLEEMEALLAAASSPGDSNSLRDRALLEFLYASGARISEAMNLVLDDIDFETEPALVRLF 188 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQ 249 GKG K RI L +A+ Y L Q +F GKP++ I+ Sbjct: 189 GKGRKERISMLGRQACQALQAYLVRVRPTLAEKGQSRGRVFLNTYGKPMSRQTAWAIIQA 248 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 + + HTLRH FATHLL G D+R +Q +LGH ++TT+IYT V+ + Sbjct: 249 AAKRAQIDRPVHPHTLRHCFATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQ----M 304 Query: 310 MMEIYDQTHP 319 ++E+Y HP Sbjct: 305 LLEVYASAHP 314 >gi|296164601|ref|ZP_06847168.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900020|gb|EFG79459.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 313 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 87/310 (28%), Positives = 146/310 (47%), Gaps = 19/310 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF-ISK 77 Q +L +L IERG++ TL SY D R++ L+ I + ++ ++ F ++ Sbjct: 11 QGYLDHLTIERGVAANTLSSYRRDLRRYTKHLS-----DRGIHDLAKVGEDDVSEFLVAL 65 Query: 78 RR------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131 RR T + S R+L ++ ++ + +R LP++L Sbjct: 66 RRGDPDAGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPGRRLPKSLTI 125 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 Q L L++ ++ + + RN A+L LLY G RISEA+ L ++ ++ ++ Sbjct: 126 DQVLALLEGAGGDSASDGP-LTLRNRALLELLYSTGARISEAVGLDVDDVDSRARSVLLR 184 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQ 249 GKG K R+VP+ +A+ Y DL + +F +RG L+ + ++ Sbjct: 185 GKGGKQRLVPVGRPAVQALDAYLVRGRPDLARRGRGTPAIFLNVRGGRLSRQSAWQVLQD 244 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 G+ + H LRHSFATHLL G D+R +Q +LGH ++TTQIYT V Sbjct: 245 AAERAGISSGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTMVTVHA---- 300 Query: 310 MMEIYDQTHP 319 + E++ HP Sbjct: 301 LREVWAGAHP 310 >gi|170724856|ref|YP_001758882.1| tyrosine recombinase XerC [Shewanella woodyi ATCC 51908] gi|169810203|gb|ACA84787.1| tyrosine recombinase XerC [Shewanella woodyi ATCC 51908] Length = 299 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 91/324 (28%), Positives = 156/324 (48%), Gaps = 47/324 (14%) Query: 20 NWLQNLE----IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 NW Q+ E ER LSK T+++Y + + L T + +S +I++ + Sbjct: 4 NWFQHFESYLSAERQLSKHTVRNYLFELNRVDQLLDDST-------SWLSVSREQIQSAM 56 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 S+ + + RSL +LS +K F ++L + + + +N+ K++ LP+ ++ Sbjct: 57 SQLHRRGLSPRSLSLTLSAVKQFCEFLLREGVIQTNPAINLSAPKQNKPLPKNMDPDSVS 116 Query: 136 TLVDNVLLHTSHETKWIDA------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 L++ ID R+ AI+ L Y GLR++E +L +I + ++ Sbjct: 117 HLLE------------IDGDDPLSLRDKAIMELFYSSGLRLAELAALNISDIQFSERLVK 164 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 + GKG K RI+P+ AI ++ C D LF +G L Q Sbjct: 165 VLGKGGKERILPIGKMAISAIDKWLACRRLIPCEHD-------ALFITNKGTRLAHRSIQ 217 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + + + L + H LRHSFATH+L + DLR++Q +LGH LSTTQIYT+++ + Sbjct: 218 ARLSKWGQEQALNMRVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQIYTSLDFQ 277 Query: 305 NGGDWMMEIYDQTHP--SITQKDK 326 + + ++YD HP + +KDK Sbjct: 278 H----LAKVYDGAHPRAAKAKKDK 297 >gi|148552940|ref|YP_001260522.1| phage integrase family protein [Sphingomonas wittichii RW1] gi|148498130|gb|ABQ66384.1| phage integrase family protein [Sphingomonas wittichii RW1] Length = 301 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 93/306 (30%), Positives = 147/306 (48%), Gaps = 31/306 (10%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQF--LIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 +L+ L E G ++ TL +Y D R L+ + +QT+ +++ Sbjct: 9 QFLEMLAAEGGAARNTLLAYGSDLRGASELLGGGLVGADTAGLQTLGG-------EWMAL 61 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 RT S+ R S ++ F +L++ I + + +LPR L+ L Sbjct: 62 SRT------SVARKASVLRRFFAFLEEEGIRRDDPSDALPRPAVQRALPRTLSHGDIERL 115 Query: 138 VDNVLLHTSHETKWIDA---RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 D L + D R A++ LLYG GLR +E +SL + D+ L ++GKG Sbjct: 116 FDT--LEERRRDRHADPLTLRLIALVELLYGSGLRATELVSLPRHALRGDRPFLILRGKG 173 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 + R+VP+ R A+ E+ P D Q LF G +FQ +R+L Sbjct: 174 GRERLVPISDRARMAVAEWGAHVPTD-----QPWLFPSGHGHLSRVRLFQ-LVRELAAEA 227 Query: 255 GLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+P + H LRH+FATHLL G DLR++Q++LGH ++TTQIYT+VNS + ++E+ Sbjct: 228 GIPPQRISPHVLRHAFATHLLEGGADLRALQTMLGHADIATTQIYTHVNSAH----LVEL 283 Query: 314 YDQTHP 319 + HP Sbjct: 284 VNARHP 289 >gi|229515837|ref|ZP_04405295.1| tyrosine recombinase XerC [Vibrio cholerae TMA 21] gi|229347100|gb|EEO12061.1| tyrosine recombinase XerC [Vibrio cholerae TMA 21] Length = 311 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 78/304 (25%), Positives = 155/304 (50%), Gaps = 16/304 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L E+GLS+ T ++Y+ +L ++ + QL +R + + + Q + Sbjct: 24 LHTEKGLSQYTQRNYKQQLETMTQYLV-----QVGLTHWSQLDSAWVRQLVMQGKRQGMK 78 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S+ LS ++SFL +L R + + +K +LP+ L+ + L++ Sbjct: 79 ASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRTLPKNLDVDEMAQLLEVT--- 135 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + + R+ AI+ L+YG GLR++E +S+ +++ + +R+ GKG+K R V Sbjct: 136 ---DDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVWFAG 192 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 ++ + ++ L L + + LF G ++ Q+ + + + + + H Sbjct: 193 QAQEWVGKWLKLRS-QLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISPHK 251 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ ++ + ++YDQ HP +K Sbjct: 252 LRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQH----LAQVYDQAHPRARKK 307 Query: 325 DKKN 328 +K + Sbjct: 308 NKDD 311 >gi|206901908|ref|YP_002251233.1| recombinase [Dictyoglomus thermophilum H-6-12] gi|206741011|gb|ACI20069.1| recombinase [Dictyoglomus thermophilum H-6-12] Length = 301 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 88/315 (27%), Positives = 153/315 (48%), Gaps = 19/315 (6%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L +E +N++ L ER S TL+SY +R + F + E+ + R +R Sbjct: 4 DLKREIENYINYLRFERNYSPNTLRSY---SRDLMDFYKYCKEKDLDFTNKRN-----VR 55 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 ++I + + + R + ++SF +YL + E + + K LP+ L+ Sbjct: 56 SYIQFIAQKNYKNSTFVRKVISLRSFFEYLLTFEKINEDLTVFIPTPKAEKKLPQFLSVD 115 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + + L+++ L I R+ AI+ LY G+R+SE + + ++I + +R+ G Sbjct: 116 EVMKLLNSPSL-----DDLIGIRDRAIIETLYATGIRVSELVGMNEEDINWNYGEIRVFG 170 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 K K RIV + K + Y D L + F +G ++ + I++ + Sbjct: 171 KRAKERIVIVGEETLKILQLYKDHVRPKLLKKPEKAFFLNAKGGRISDRAIRMIIKKYTK 230 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 +S HTLRH+FATHLL G DLR +Q +LGH R+STTQIYT++ S + + + Sbjct: 231 DFNKKVS--PHTLRHTFATHLLEGGADLRYVQELLGHVRISTTQIYTHLTS----EQIRK 284 Query: 313 IYDQTHPSITQKDKK 327 Y +HP +K+ K Sbjct: 285 TYTLSHPRAIKKETK 299 >gi|93004888|ref|YP_579325.1| tyrosine recombinase XerD [Psychrobacter cryohalolentis K5] gi|92392566|gb|ABE73841.1| Tyrosine recombinase XerD [Psychrobacter cryohalolentis K5] Length = 312 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 75/238 (31%), Positives = 128/238 (53%), Gaps = 13/238 (5%) Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 R+ R LS ++ F ++ + ++ +++ K LP+ L E VDN+L Sbjct: 82 RTQARMLSSLRQFYLWMIASNLREDNPCERIKSPKLGRPLPKDLAEAD----VDNLLAAP 137 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 T + R+ A+L +LY CGLR+SE ++L+ + + + L+I GKG+K R+VPL Sbjct: 138 DSSTA-LGLRDKAMLEVLYACGLRVSELVNLSLEQVNLNSGWLQITGKGNKTRLVPLGEY 196 Query: 206 VRKAILEYYDLCPFDLNLNIQL----PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 A+ +Y DL +++ +F +G + F +++ + + + Sbjct: 197 AADALEDYLTHGRGDLIAHLKAGNCQAVFLTAQGGYMTRQNFWYLLKKYAKVASIDKDLS 256 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HTLRH+FATHLL++G DLRS+Q +LGH LSTTQIYT+V + + +++ + HP Sbjct: 257 PHTLRHAFATHLLNHGADLRSVQLLLGHSDLSTTQIYTHVATAR----LQKLHAEHHP 310 >gi|239917914|ref|YP_002957472.1| tyrosine recombinase XerD [Micrococcus luteus NCTC 2665] gi|239839121|gb|ACS30918.1| tyrosine recombinase XerD [Micrococcus luteus NCTC 2665] Length = 321 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 97/332 (29%), Positives = 141/332 (42%), Gaps = 66/332 (19%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L +L +ERGL++ TL +Y D ++ +L E ++ + + F+ T Sbjct: 19 LDHLAVERGLAENTLAAYRRDLARYRRWL-----EAAGVRAPGDVDPGHVAGFVQALATG 73 Query: 82 KIGDRSLK-----RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 G R L R L+ ++ ++ + ++ K LPRAL +Q Sbjct: 74 DDGGRPLAVRSAARVLAAVRGLHRFWALEGLAETDPARDVHPPKPGTRLPRALPVEQVSA 133 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP------QNIMDD--QSTL 188 L+D V T R+ A+L LYG G RISE + L DD Q + Sbjct: 134 LLDAVPTDTP-----AGLRDRALLEFLYGTGARISEVVGLDVDDVVGLAQTGDDGGQPVV 188 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL--------NP 240 R+ GKG K R+VP+ Y D L +RG+P P Sbjct: 189 RLFGKGSKERVVPI---------GSYAAAALDAWL---------VRGRPTIMAGAARSTP 230 Query: 241 GVF-----QRYIRQ-----LRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 +F R RQ L+R GL + HTLRH FATHLL+ G D+R +Q +L Sbjct: 231 ALFVNACGGRLSRQSAWAVLKRAAERAGLEADVSPHTLRHCFATHLLAGGADVRVVQELL 290 Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 GH ++TTQ+YT V D + E+Y HP Sbjct: 291 GHASVTTTQVYTLVTV----DSLREVYSAAHP 318 >gi|332886450|gb|EGK06694.1| hypothetical protein HMPREF9456_00568 [Dysgonomonas mossii DSM 22836] Length = 295 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 82/301 (27%), Positives = 148/301 (49%), Gaps = 13/301 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +++ L E+ S T SY D QF+ FLA E + I+ + IR +I Sbjct: 6 EKYIRYLRYEKNYSLHTEISYSEDLSQFVEFLA----EHFSDTDIKHVDRDIIRMWIVSM 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 ++I RS+ R LS +KSF +YL++ T + + K +P N ++ Sbjct: 62 MEREISARSVNRKLSAVKSFYRYLQRIGEVTVNPASKVNGPKVGRPIPAFANSADMAKVL 121 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D S E+ R+ I+ L Y G+R +E + L ++ T+++ GK +K R Sbjct: 122 DEENYGDSFES----LRDHIIIELFYVTGIRRAELIGLKDVDVDFSSETIQVTGKRNKQR 177 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 ++P +++++ +Y + ++ N LF G+PL P + R + + + Sbjct: 178 LIPFSNGMKQSLEQYIAVRNKEVG-NQSGYLFVKNNGEPLYPMLVHRIVTSSLQQIETLS 236 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + H LRHSFAT +L+NG D+ +++ +LGH L+ T+IYT+ + + + IY++ H Sbjct: 237 KVSPHVLRHSFATGMLNNGADINAVKELLGHASLAATEIYTHTSFEE----LKRIYNKAH 292 Query: 319 P 319 P Sbjct: 293 P 293 >gi|323697881|ref|ZP_08109793.1| tyrosine recombinase XerD [Desulfovibrio sp. ND132] gi|323457813|gb|EGB13678.1| tyrosine recombinase XerD [Desulfovibrio desulfuricans ND132] Length = 307 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 89/302 (29%), Positives = 144/302 (47%), Gaps = 16/302 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L++L IE+GLS+ +L Y D L FL EE+ ++ L+ + +++ R Sbjct: 21 YLEHLLIEKGLSENSLTGYANDLGSLLAFL----EERSF--PLKDLTDQTLFLYLTHLRA 74 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + RSL R LS ++ F + K E + N K LPR L E + + Sbjct: 75 RGLKSRSLARHLSSLRGFFAFAVGEKWYKEDPGQLLENPK----LPRKLPEFLSREEISR 130 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 VL T + R+ +L LLY GLR+SE + + + L++ GKG K R++ Sbjct: 131 VLALPDTSTP-LGMRDKVMLELLYAAGLRVSELIGMKVLDYDPQVGMLKVFGKGSKDRLI 189 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 P+ + + + Y + +F GK L + I++ G+ S Sbjct: 190 PIHYTAQDYLNRYLEFTRPGFKPREDF-MFLNRSGKGLTRQGVWKLIKKYAEAAGIKRSI 248 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 + HT RHSFATHLL G DLR++Q +LGH +S T+IYT+V + + ++ + HP Sbjct: 249 SPHTFRHSFATHLLEGGADLRTVQILLGHADISATEIYTHVEANR----LKTLHRKFHPR 304 Query: 321 IT 322 T Sbjct: 305 ST 306 >gi|319781237|ref|YP_004140713.1| tyrosine recombinase XerD [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167125|gb|ADV10663.1| tyrosine recombinase XerD [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 305 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 84/297 (28%), Positives = 133/297 (44%), Gaps = 30/297 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ + ERG ++ TL SY D + + +IRA++ Sbjct: 8 EAFLEMMSAERGAAENTLSSYRRD---------LEDASGAIDGGLAGAAAADIRAYLDDI 58 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S R LS I+ F K+L + + + + KK LP+ ++E L+ Sbjct: 59 AARGFAATSQARKLSAIRQFFKFLYAEGLRGDDPTGTLDSPKKGRPLPKTMSEADTGRLI 118 Query: 139 DNVLLHTSHETKW-----IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 D + + R A++ +LY GLR+SE + L D ++GK Sbjct: 119 DRAAIEAGDVSSGDGDSLASLRLHALVEVLYATGLRVSELVGLPVTVAQRDDRFFMVRGK 178 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR--------GIRGKPLNPGVFQR 245 GDK R+VPL R A+ + L ++P F L+ VF R Sbjct: 179 GDKERMVPLSAKARAAMKTW-------LAARAKVPAFADSPFLFPAASDSGYLSRQVFAR 231 Query: 246 YIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 ++ L G+ + + H LRH+FA+HLL NG DLR++Q +LGH +STTQIYT+V Sbjct: 232 DLKGLAARAGIASAKISPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTHV 288 >gi|145588480|ref|YP_001155077.1| tyrosine recombinase XerD [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046886|gb|ABP33513.1| tyrosine recombinase XerD subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 305 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 87/306 (28%), Positives = 147/306 (48%), Gaps = 39/306 (12%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLA--FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 +E GL+K +L +Y D L+ LA Y + + + + + ++ A+I+ RR K Sbjct: 24 LEDGLAKNSLSAYRRD----LLLLAQWLYQQSGVDLYAVTE---KDLTAYIAHRRADKA- 75 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 + R L+ K F ++ + + + +R K++ P+ L+E Q L++ + Sbjct: 76 -TTANRRLTVFKRFYRHALRINLVKSDPCIGLRAAKQALRFPKTLSEDQVTALLNAPDIE 134 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLL 203 T + R+ +L L+Y GLR+SE +SL + ++ +R+ GKG K R+VP Sbjct: 135 TP-----LGLRDRTMLELMYASGLRVSEIVSLKTVALGLNEGVVRVVNGKGGKERLVPFG 189 Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIR----------GKPLNPGVFQRYIRQLRRY 253 + + Y + PL G G L F I++ Sbjct: 190 GEAGQWLRRYLA--------EARTPLLEGKTTDAVFVGRHTGTGLTRQAFWALIKRYATV 241 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 +P++ + HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V + + I Sbjct: 242 ANIPVALSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARER----LKSI 297 Query: 314 YDQTHP 319 + Q HP Sbjct: 298 HQQHHP 303 >gi|294664569|ref|ZP_06729911.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605653|gb|EFF48962.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 323 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 92/309 (29%), Positives = 150/309 (48%), Gaps = 23/309 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L E+G+++ TL+SY D L LA + + + + + ++ R Sbjct: 28 ERFLDRFWAEQGVARQTLESYRRD----LEGLARWRDG--AGGGLLGIDRAALFDYLRWR 81 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 RS R LS +++F + + ++ + + SLP+AL E Q L+ Sbjct: 82 TRANYSPRSTARLLSTLRAFYGLCLRDGVRSDDPTALIDPPQLPRSLPKALTESQIEALL 141 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L T R+ A+L L+Y GLR+SE ++L + Q LR+ GKG K R Sbjct: 142 AAPDLDTP-----AGLRDRAMLELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDR 196 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNI-------QLPLFRGIRGKPLNPGVFQRYIRQLR 251 +VPL + + Y L N Q+PLF + +PL+ F +++ Sbjct: 197 LVPLGEESQHWLERYLREARPLLAANKPVTAVDGQVPLFIDVSRQPLSRQQFWALVKRYA 256 Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ P++ + H LRHSFATHLL++G DLR++Q +LGH LSTTQIYT V ++ + Sbjct: 257 AAAGIDPVTVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQH----L 312 Query: 311 MEIYDQTHP 319 +++ HP Sbjct: 313 QKLHASHHP 321 >gi|213965974|ref|ZP_03394164.1| tyrosine recombinase XerD [Corynebacterium amycolatum SK46] gi|213951388|gb|EEB62780.1| tyrosine recombinase XerD [Corynebacterium amycolatum SK46] Length = 312 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 84/300 (28%), Positives = 145/300 (48%), Gaps = 13/300 (4%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-- 82 L +E+GLS TL SY+ D ++ +L ++ T + +S E A++++ + Sbjct: 15 LAVEKGLSANTLASYKRDLEKYRTYLREIGRTELAQVTEQDVS--EFLAYLARGDKSEGR 72 Query: 83 --IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + S+ RSLS ++SF K+ + K+ + P+AL+ + L+++ Sbjct: 73 PALAPTSVTRSLSAVRSFHKFAVGEGALDVDVAKRVAPPKQPSRYPKALSIDEVTRLIES 132 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + D RN A++ LY G R+SE L ++ + + + ++GKG K RIV Sbjct: 133 I--PDDGTAVVTDLRNRALVEFLYSTGARVSEVTGLDIDDVDRETNLVLLRGKGGKERIV 190 Query: 201 PLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ A+ + P + N LF G+ L+ + +L GL + Sbjct: 191 PVGSPAMAALDAWLTRGRPSWVRANSGPALFINSLGRRLSRQSAGNTLAELGERAGLKVK 250 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRHSF THL+ G D+R +Q +LGH ++TTQIYT + ++N M ++ HP Sbjct: 251 ISPHTLRHSFGTHLIEGGADVRVVQELLGHASVTTTQIYTMITAEN----MRRVWAGAHP 306 >gi|118498082|ref|YP_899132.1| site-specific recombinase [Francisella tularensis subsp. novicida U112] gi|194323307|ref|ZP_03057091.1| phage integrase family protein [Francisella tularensis subsp. novicida FTE] gi|254373434|ref|ZP_04988922.1| integrase/recombinase XerC [Francisella tularensis subsp. novicida GA99-3549] gi|254374894|ref|ZP_04990375.1| hypothetical protein FTDG_01073 [Francisella novicida GA99-3548] gi|118423988|gb|ABK90378.1| site-specific recombinase [Francisella novicida U112] gi|151571160|gb|EDN36814.1| integrase/recombinase XerC [Francisella novicida GA99-3549] gi|151572613|gb|EDN38267.1| hypothetical protein FTDG_01073 [Francisella novicida GA99-3548] gi|194322671|gb|EDX20151.1| phage integrase family protein [Francisella tularensis subsp. novicida FTE] Length = 292 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 92/322 (28%), Positives = 161/322 (50%), Gaps = 45/322 (13%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 L+ N+L NL + S+ T+ +Y+ D Q + ++ + I L++++I + Sbjct: 4 LEHINNFLDNLLYLKNYSQETINNYQRDLLQL--------NQALSDKNIISLTHSDILIW 55 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 I K Q ++L+R LS ++SF +L +I +++ ++ K S LP+ +N + Sbjct: 56 IKKLHAQGNSPKTLQRKLSSVRSFFNFLINSEIVSQNPANGIKAPKDSKRLPKVVNTDEL 115 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 L+D ++ S++ I+AR+ A LLY CG+R+SE S+ ++I Q +R+ GKG Sbjct: 116 AYLLD---VNPSND---IEARDIACFDLLYSCGIRLSELSSVELKDISISQKNIRVTGKG 169 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----------LFRGIRGKPLNPGVF 243 +K RIV Y+ NLN L LF GK L Sbjct: 170 NKQRIV------------YFGTKTLS-NLNRWLKIRDSLKPSSDYLFISRDGKHLTNRSI 216 Query: 244 QRYIRQL-RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 Q+ + ++Y + H LRHSFA+H+L + DL +++ +LGH +S+TQIYT++N Sbjct: 217 QKRLEIFAQKYASRHIH--PHMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLN 274 Query: 303 SKNGGDWMMEIYDQTHPSITQK 324 + + ++D+ HP +K Sbjct: 275 FQQ----LASVFDKAHPRAKKK 292 >gi|326572192|gb|EGE22188.1| tyrosine recombinase XerD [Moraxella catarrhalis BC7] Length = 307 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 81/294 (27%), Positives = 149/294 (50%), Gaps = 19/294 (6%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 + RGLS T +Y D R + +++ + +++R + + K +R Sbjct: 30 LARGLSIATRNAYSQDVRLCI---------RLSDMPVNLWQPSDVRNHLMCLKDAKKSER 80 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S+ R L+ + F + + ++ +++ K +LP+ L+E++ +L+D + + Sbjct: 81 SIARVLASLCQFFLWQIESGYREDNPCESIKTPKLGKTLPKTLSEQEVSSLLDAPDISSV 140 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 R+ A+L +LY CGLR+SE SL+ +++ L + GKG+K+R++PL Sbjct: 141 R-----GLRDKAMLEVLYACGLRVSELTSLSLEHLNLTAGWLSVTGKGNKMRLIPLGEYA 195 Query: 207 RKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 A+ EY + + +F +G + F I++ G+ + + HTL Sbjct: 196 LSALNEYLAVRGSLLIGKKDCQAVFLTEQGGYMTRHNFWHLIKKYALMAGINTAISPHTL 255 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 RH+FATHL+++G DLRS+Q +LGH LSTTQIYT+V + + ++ + HP Sbjct: 256 RHAFATHLVNHGADLRSVQLLLGHSDLSTTQIYTHVATTR----LQNLHAKHHP 305 >gi|309804168|ref|ZP_07698246.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 11V1-d] gi|309805694|ref|ZP_07699734.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 09V1-c] gi|308163751|gb|EFO66020.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 11V1-d] gi|308164947|gb|EFO67190.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 09V1-c] Length = 179 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 63/171 (36%), Positives = 101/171 (59%), Gaps = 9/171 (5%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ AIL LY G+R+SE ++L +I ++ +++ GKG K R++P+ +V + ++ Y Sbjct: 14 RDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIPI-SNVAMSWIKKY 72 Query: 215 DLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 + + L + +F RG + + I++ + G+ + T HTLRH+FA Sbjct: 73 QITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLAGINKNVTPHTLRHTFA 132 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321 THLL NG DLR +Q ILGH +STTQIYTN+ K+ +M++Y +THP I Sbjct: 133 THLLENGADLRIVQEILGHSDISTTQIYTNLTQKH----IMDVYKRTHPRI 179 >gi|150025257|ref|YP_001296083.1| tyrosine recombinase XerC [Flavobacterium psychrophilum JIP02/86] gi|149771798|emb|CAL43272.1| Tyrosine recombinase XerC [Flavobacterium psychrophilum JIP02/86] Length = 298 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 89/299 (29%), Positives = 141/299 (47%), Gaps = 26/299 (8%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87 E+ S LT +Y D + F FL E K + ++SYT IR++I ++ + S Sbjct: 15 EKNYSPLTALAYGKDLQFFQTFL----EIKFDNTPLEEVSYTLIRSWIVSMVDAEMSNTS 70 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 + R ++ +K+F K+L K K + + + LK + +E + +D VL + Sbjct: 71 VNRKIASLKAFYKFLLKTKQIEINPLSKHKALKTPKKIQIPFSEAE----LDTVLTQIQY 126 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207 + + R+ I+ L Y G+R SE +SL N T+++ GK +K RI+PLLP + Sbjct: 127 KAGFEGMRDKLIIDLFYTTGIRRSELISLQISNTNLVAGTIKVIGKRNKERIIPLLPVII 186 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIR-------GKPLNPGVFQRYIRQLRRYLGLPLST 260 K I Y L QL L G N R I + + Sbjct: 187 KQIKVY-------LAERKQLSLIVAKENLILLSNGNKANETFVYRLINDYFSNVSEKVKK 239 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H LRH+FATH+L++G DL SI+ +LGH L++TQ+YTN + + +Y HP Sbjct: 240 SPHMLRHTFATHMLNHGADLNSIKELLGHSSLASTQVYTN----SSLAELKNVYQNAHP 294 >gi|118462850|ref|YP_882918.1| site-specific tyrosine recombinase XerC [Mycobacterium avium 104] gi|118164137|gb|ABK65034.1| tyrosine recombinase XerC [Mycobacterium avium 104] Length = 301 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 90/304 (29%), Positives = 139/304 (45%), Gaps = 28/304 (9%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L ++ G S T ++Y D R L AF E + LS +R+++S + Sbjct: 15 LALQCGRSAHTRRAYLGDLRSLL---AFAGERGTGLDG---LSLPLLRSWLSAAAAGGVA 68 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 +L R S +K+F + +R + T ++ K +LP L + QAL + Sbjct: 69 RTTLARRTSAVKAFTAWAVRRGLLTADPAARLQVPKTHRTLPAVLRQDQALGAMAAAKNG 128 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + + I R+ I+ +LY G+R+SE L ++ + +R+ GKG+K R VP Sbjct: 129 AA-QGDPIALRDRLIVEMLYATGIRVSELCGLDIDDVDTGRRLVRVLGKGNKQRSVPFGA 187 Query: 205 SVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL--------G 255 +A+ + D P N L G RG+ L+ +RQ R + G Sbjct: 188 PAGEALHAWLADGRPALANAESGPALLLGARGRRLD-------VRQARTVVHQTIAAVSG 240 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 P H LRHS ATHLL G DLR +Q +LGH L+TTQ+YT+V + ++D Sbjct: 241 AP-DMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSR----LRAVHD 295 Query: 316 QTHP 319 Q HP Sbjct: 296 QAHP 299 >gi|41409056|ref|NP_961892.1| site-specific tyrosine recombinase XerC [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397415|gb|AAS05275.1| XerC [Mycobacterium avium subsp. paratuberculosis K-10] Length = 301 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 90/304 (29%), Positives = 139/304 (45%), Gaps = 28/304 (9%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L ++ G S T ++Y D R L AF E + LS +R+++S + Sbjct: 15 LALQCGRSAHTRRAYLGDLRSLL---AFAGERGTGLDG---LSLPLLRSWLSAAAAGGVA 68 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 +L R S +K+F + +R + T ++ K +LP L + QAL + Sbjct: 69 RTTLARRTSAVKAFTAWAVRRGLLTADPAARLQVPKTHRTLPAVLRQDQALGAMAAAKTG 128 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + + I R+ I+ +LY G+R+SE L ++ + +R+ GKG+K R VP Sbjct: 129 AA-QGDPIALRDRLIVEMLYATGIRVSELCGLDIDDVDTGRRLVRVLGKGNKQRSVPFGA 187 Query: 205 SVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL--------G 255 +A+ + D P N L G RG+ L+ +RQ R + G Sbjct: 188 PAGEALHAWLADGRPALANAESGPALLLGARGRRLD-------VRQARTVVHQTIAAVSG 240 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 P H LRHS ATHLL G DLR +Q +LGH L+TTQ+YT+V + ++D Sbjct: 241 AP-DMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSR----LRAVHD 295 Query: 316 QTHP 319 Q HP Sbjct: 296 QAHP 299 >gi|314933431|ref|ZP_07840796.1| tyrosine recombinase XerC [Staphylococcus caprae C87] gi|313653581|gb|EFS17338.1| tyrosine recombinase XerC [Staphylococcus caprae C87] Length = 296 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 86/305 (28%), Positives = 156/305 (51%), Gaps = 22/305 (7%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 ++ +L L++ER S+ TL+SY D QF FL E + + T Y + R +++ Sbjct: 5 QKTFLYMLKVERNFSEYTLKSYHDDLIQFNDFLV---SEHLDLAT---FEYKDARNYLAF 58 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 + + ++ R +S +++F +Y + + + + + KK LP+ E++ Sbjct: 59 LYSHNLKRTTVSRKISTLRTFYEYWMTQDELIVNPFVQLVHPKKEQYLPQFFYEEEM--- 115 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 L T + R+ I+ LLY G+R+SE +++ ++I + +++ GKG+K Sbjct: 116 --EALFQTVEQDNKKGMRDRVIIELLYATGIRVSELINIKIKDIDMNLPGVKVLGKGNKE 173 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQ--LRRYL 254 R +P +++I Y D + + + L + G P+ GV RY+ ++R Sbjct: 174 RFIPFGEFCKQSIERYLDEFQPRKSSDHEY-LIVNMSGAPITERGV--RYVLNDVVKRTA 230 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++ + ++Y Sbjct: 231 GVT-DIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQ----LRKVY 285 Query: 315 DQTHP 319 HP Sbjct: 286 LNAHP 290 >gi|157803898|ref|YP_001492447.1| site-specific tyrosine recombinase XerD [Rickettsia canadensis str. McKiel] gi|157785161|gb|ABV73662.1| tyrosine recombinase [Rickettsia canadensis str. McKiel] Length = 308 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 96/297 (32%), Positives = 151/297 (50%), Gaps = 27/297 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ L ER LSK ++ SY+ D F +LA ++ I T IR +I Sbjct: 7 FLEMLLAERALSKNSIFSYKRDLFDFQNYLAKQKLSELNITT------ENIRNWIEYLAD 60 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS+ R +S IKS+ ++L T + +LN+ K + LP L+ Q + + Sbjct: 61 NDLQARSINRKISTIKSYYEFLISENHTAFNPVLNVDLPKYQSKLPEILSIDQ----IKS 116 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST------LRIQGKG 194 +L + S + R +A+++LLY GLR+SE +SL +I+ ++ + + GKG Sbjct: 117 LLEYCSQDATPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNKMSGEVKKVFSVLGKG 176 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LF--RGIRGKPLNPGVFQRYI 247 +K R++ + +I++Y L D+ LN P LF I G + F + Sbjct: 177 NKERVIIINEQAVISIVKY--LAIRDVFLNKAKPKNLIYLFPSSAIAGY-MTRQNFAMLL 233 Query: 248 RQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + Y GL P + H LRHSFA+HLL G DLR IQ +LGH +STTQIYT++ + Sbjct: 234 KSAALYAGLNPKHISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQT 290 >gi|56708541|ref|YP_170437.1| integrase/recombinase XerC [Francisella tularensis subsp. tularensis SCHU S4] gi|89255722|ref|YP_513083.1| integrase/recombinase XerC [Francisella tularensis subsp. holarctica LVS] gi|110671012|ref|YP_667569.1| integrase/recombinase XerC [Francisella tularensis subsp. tularensis FSC198] gi|115314216|ref|YP_762939.1| integrase/recombinase XerC [Francisella tularensis subsp. holarctica OSU18] gi|156501676|ref|YP_001427741.1| phage integrase family protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|224457717|ref|ZP_03666190.1| phage integrase family protein [Francisella tularensis subsp. tularensis MA00-2987] gi|254367099|ref|ZP_04983133.1| integrase/recombinase xerC [Francisella tularensis subsp. holarctica 257] gi|254371168|ref|ZP_04987170.1| site-specific recombinase [Francisella tularensis subsp. tularensis FSC033] gi|254875393|ref|ZP_05248103.1| integrase/recombinase xerC [Francisella tularensis subsp. tularensis MA00-2987] gi|290953429|ref|ZP_06558050.1| integrase/recombinase XerC [Francisella tularensis subsp. holarctica URFT1] gi|295313310|ref|ZP_06803933.1| integrase/recombinase XerC [Francisella tularensis subsp. holarctica URFT1] gi|56605033|emb|CAG46136.1| Integrase/recombinase XerC [Francisella tularensis subsp. tularensis SCHU S4] gi|89143553|emb|CAJ78731.1| Integrase/recombinase XerC [Francisella tularensis subsp. holarctica LVS] gi|110321345|emb|CAL09519.1| Integrase/recombinase XerC [Francisella tularensis subsp. tularensis FSC198] gi|115129115|gb|ABI82302.1| integrase/recombinase XerC [Francisella tularensis subsp. holarctica OSU18] gi|134252923|gb|EBA52017.1| integrase/recombinase xerC [Francisella tularensis subsp. holarctica 257] gi|151569408|gb|EDN35062.1| site-specific recombinase [Francisella tularensis subsp. tularensis FSC033] gi|156252279|gb|ABU60785.1| phage integrase family protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|254841392|gb|EET19828.1| integrase/recombinase xerC [Francisella tularensis subsp. tularensis MA00-2987] gi|282159761|gb|ADA79152.1| integrase/recombinase XerC [Francisella tularensis subsp. tularensis NE061598] Length = 292 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 90/315 (28%), Positives = 162/315 (51%), Gaps = 31/315 (9%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 L+ N+L NL + S+ T+ +Y+ D Q + ++ + I L++++I + Sbjct: 4 LEHINNFLDNLLYLKNYSQETINNYQRDLLQL--------NQALSDKNIISLTHSDILIW 55 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 I K Q ++L+R LS ++SF +L +I +++ ++ K S LP+ +N + Sbjct: 56 IKKLHAQGNSPKTLQRKLSSVRSFFNFLINSEIVSQNPANGIKAPKDSKRLPKVVNTDEL 115 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 L+D ++ S++ I+AR+ A LLY CG+R+SE S+ ++I Q +R+ GKG Sbjct: 116 AYLLD---INPSND---IEARDIACFDLLYSCGIRLSELSSVELKDISISQKNIRVTGKG 169 Query: 195 DKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 +K RIV L ++ + + L P LF GK L Q+ + Sbjct: 170 NKQRIVYFGTKTLSNLNRWLKIRDSLKPS------SDYLFISRDGKHLTNRSIQKRLEIF 223 Query: 251 -RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 ++Y + H LRHSFA+H+L + DL +++ +LGH +S+TQIYT++N + Sbjct: 224 AQKYASRHIH--PHMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQ---- 277 Query: 310 MMEIYDQTHPSITQK 324 + ++D+ HP +K Sbjct: 278 LASVFDKAHPRAKKK 292 >gi|315084829|gb|EFT56805.1| phage integrase, SAM-like domain protein [Propionibacterium acnes HL027PA2] Length = 331 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 96/336 (28%), Positives = 161/336 (47%), Gaps = 52/336 (15%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L++L +ERGLS T+Q+Y D ++ +L I ++ +++ ++ F +R Sbjct: 10 EDYLRHLVVERGLSDNTVQAYRRDLLRYQEYLGSRG-----IGSLAEVTRVDVEEF--RR 62 Query: 79 RTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 IG S+ R + +++ ++ M +S LP+AL+ Q + Sbjct: 63 HLDHIGLAPASVTRCVVAVRNLHRFAVGSGQLQADVTAGMSPGTRSRRLPKALSMDQVES 122 Query: 137 LVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNI---MDDQS-TLRIQ 191 L+ + +T ++ R++A+L LLYG G R+SE +L +I +DD LR+ Sbjct: 123 LL------AAPDTSTVEGLRDAALLELLYGTGARVSEVCALDVDDIRPVLDDPDLGLRLI 176 Query: 192 GKGDKIRIVPLLPSVRKAI--------LEYYDLCPFDLNL-------------------N 224 GKGDK RIVPL KA+ + ++ + L N Sbjct: 177 GKGDKERIVPLGSYAAKAVDAWLIRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAEIGN 236 Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSI 283 + L RG+ L+ IR+ GL + + H+LRHS+ATHLL G D+R + Sbjct: 237 GEHALLLNTRGRRLSRQSAWAVIRRAGEAAGLDVEHLSPHSLRHSYATHLLDGGADVRVV 296 Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 Q +LGH ++TTQIYT V + D + E+Y +HP Sbjct: 297 QELLGHSSVTTTQIYTLVTA----DHLREVYRSSHP 328 >gi|196250937|ref|ZP_03149621.1| integrase family protein [Geobacillus sp. G11MC16] gi|196209578|gb|EDY04353.1| integrase family protein [Geobacillus sp. G11MC16] Length = 301 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 91/289 (31%), Positives = 144/289 (49%), Gaps = 26/289 (8%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-I 83 L+IE+ S T+ Y D R F FL + ++Q + ++ T +R FI + T++ + Sbjct: 14 LQIEKNYSLNTVDGYAYDLRCFENFL---IQHGYSVQ-LNDITKTHVRRFIQHQITKENV 69 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 R++ R +S +KSF KY K + ++ + K + LP + +L+ + + Sbjct: 70 KPRTIYRRISCLKSFSKYCVKENLIDSDFMIGIDTPKTDSKLPTYM----SLSELRKLFH 125 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 + + RN + LL G+R SE + LT + I +T+RI GKG K R++PL Sbjct: 126 FLEQDNSRMAMRNHLLFKLLATTGMRRSEIVELTWEQIDLSNNTIRIYGKGKKERLLPLH 185 Query: 204 PSVRKAI------LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 P V I LE Y L P P+F GK LNP + +++ + GLP Sbjct: 186 PMVVPLIKSYMGSLEEYQLHP-------SQPVFLNKNGKKLNPRGLHKIFKEILQKAGLP 238 Query: 258 LST-TAHTLRHSFATHLLSNGG---DLRSIQSILGHFRLSTTQIYTNVN 302 + H LRH+FAT L+ DLR++Q +LGH L TTQ+YT+V+ Sbjct: 239 PQRFSLHHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVD 287 >gi|84393557|ref|ZP_00992311.1| tyrosine recombinase [Vibrio splendidus 12B01] gi|84375836|gb|EAP92729.1| tyrosine recombinase [Vibrio splendidus 12B01] Length = 310 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 81/302 (26%), Positives = 149/302 (49%), Gaps = 16/302 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L E+GLS T ++Y+ L + ++ Q+ +R SK + + Sbjct: 24 LRSEKGLSLHTQRNYKQQLETMAAHLV-----TLGLKDWGQVDAAWVRQLASKGMREGMK 78 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S+ LS ++SF +L R T + + +K LP+ L+ + L+D Sbjct: 79 ASSIATRLSSLRSFFDFLVLRGEMTANPAKGVSAPRKQRPLPKNLDVDEVGQLLD----- 133 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 +E + R+ A++ ++YG GLR++E + + ++++ Q +R+ GKGDK R P Sbjct: 134 -VNEDDPLSIRDRAMMEVMYGAGLRLAELVGINLKDVLGRQGEIRVIGKGDKERKAPF-S 191 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 + K ++ + DL + LF G ++ Q+ + + + + + H Sbjct: 192 GLAKEWVDKWLKVRGDLASPGEKALFVSKLGTRISHRSVQKRMEEWGKKQSVASHISPHK 251 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ ++ + + YDQ HP +K Sbjct: 252 LRHSFATHVLESSQNLRAVQELLGHENISTTQIYTHLDFQH----LAQAYDQAHPRARKK 307 Query: 325 DK 326 +K Sbjct: 308 NK 309 >gi|45442956|ref|NP_994495.1| site-specific tyrosine recombinase XerC [Yersinia pestis biovar Microtus str. 91001] gi|108806177|ref|YP_650093.1| site-specific tyrosine recombinase XerC [Yersinia pestis Antiqua] gi|108810287|ref|YP_646054.1| site-specific tyrosine recombinase XerC [Yersinia pestis Nepal516] gi|145600710|ref|YP_001164786.1| site-specific tyrosine recombinase XerC [Yersinia pestis Pestoides F] gi|153948314|ref|YP_001399204.1| site-specific tyrosine recombinase XerC [Yersinia pseudotuberculosis IP 31758] gi|153997101|ref|ZP_02022234.1| putative integrase/recombinase [Yersinia pestis CA88-4125] gi|161484900|ref|NP_667725.2| site-specific tyrosine recombinase XerC [Yersinia pestis KIM 10] gi|162418493|ref|YP_001605136.1| site-specific tyrosine recombinase XerC [Yersinia pestis Angola] gi|165926246|ref|ZP_02222078.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str. F1991016] gi|165939104|ref|ZP_02227655.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str. IP275] gi|166011640|ref|ZP_02232538.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str. E1979001] gi|166213553|ref|ZP_02239588.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str. B42003004] gi|167401874|ref|ZP_02307362.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420989|ref|ZP_02312742.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426292|ref|ZP_02318045.1| tyrosine recombinase XerC [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468815|ref|ZP_02333519.1| site-specific tyrosine recombinase XerC [Yersinia pestis FV-1] gi|170026220|ref|YP_001722725.1| site-specific tyrosine recombinase XerC [Yersinia pseudotuberculosis YPIII] gi|218930846|ref|YP_002348721.1| site-specific tyrosine recombinase XerC [Yersinia pestis CO92] gi|229837173|ref|ZP_04457338.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A] gi|229839533|ref|ZP_04459692.1| site-specific tyrosine recombinase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229900096|ref|ZP_04515233.1| site-specific tyrosine recombinase [Yersinia pestis biovar Orientalis str. India 195] gi|229900458|ref|ZP_04515587.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516] gi|270488812|ref|ZP_06205886.1| tyrosine recombinase XerC [Yersinia pestis KIM D27] gi|294505507|ref|YP_003569569.1| tyrosine recombinase [Yersinia pestis Z176003] gi|34222851|sp|Q8D1K0|XERC_YERPE RecName: Full=Tyrosine recombinase xerC gi|45437823|gb|AAS63372.1| putative integrase/recombinase [Yersinia pestis biovar Microtus str. 91001] gi|108773935|gb|ABG16454.1| tyrosine recombinase XerC subunit [Yersinia pestis Nepal516] gi|108778090|gb|ABG12148.1| tyrosine recombinase XerC subunit [Yersinia pestis Antiqua] gi|115349457|emb|CAL22430.1| putative integrase/recombinase [Yersinia pestis CO92] gi|145212406|gb|ABP41813.1| tyrosine recombinase XerC subunit [Yersinia pestis Pestoides F] gi|149289407|gb|EDM39485.1| putative integrase/recombinase [Yersinia pestis CA88-4125] gi|152959809|gb|ABS47270.1| tyrosine recombinase XerC [Yersinia pseudotuberculosis IP 31758] gi|162351308|gb|ABX85256.1| tyrosine recombinase XerC [Yersinia pestis Angola] gi|165912877|gb|EDR31503.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str. IP275] gi|165921770|gb|EDR38967.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str. F1991016] gi|165989409|gb|EDR41710.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str. E1979001] gi|166205226|gb|EDR49706.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str. B42003004] gi|166961118|gb|EDR57139.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048767|gb|EDR60175.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054811|gb|EDR64615.1| tyrosine recombinase XerC [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752754|gb|ACA70272.1| tyrosine recombinase XerC [Yersinia pseudotuberculosis YPIII] gi|229682477|gb|EEO78564.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516] gi|229686876|gb|EEO78955.1| site-specific tyrosine recombinase [Yersinia pestis biovar Orientalis str. India 195] gi|229695899|gb|EEO85946.1| site-specific tyrosine recombinase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706116|gb|EEO92125.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A] gi|262363573|gb|ACY60294.1| tyrosine recombinase [Yersinia pestis D106004] gi|262367501|gb|ACY64058.1| tyrosine recombinase [Yersinia pestis D182038] gi|270337316|gb|EFA48093.1| tyrosine recombinase XerC [Yersinia pestis KIM D27] gi|294355966|gb|ADE66307.1| tyrosine recombinase [Yersinia pestis Z176003] gi|320013559|gb|ADV97130.1| site-specific tyrosine recombinase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 303 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 85/309 (27%), Positives = 151/309 (48%), Gaps = 17/309 (5%) Query: 11 SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70 S L + + +L+ L IER LS LT+ SY RQ + E++ + + L + Sbjct: 5 SASLAPQVEAFLRYLSIERQLSPLTVTSYR---RQLSALMEI--GEQMGLAHWQTLDAAQ 59 Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 +R+ +S+ + + SL LS ++SFL +L + + + + + LP+ ++ Sbjct: 60 VRSLVSRSKRAGLHASSLALRLSALRSFLNWLVSQGVLPANPAKGVSTPRSGRHLPKNID 119 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 + L+ L + R+ A+L ++YG GLR+SE + + +++ + + Sbjct: 120 VDEVNKLLSIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGMNCKHVDLASGDVWV 173 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 GKG K R VPL + + + L +L +F GK ++ Q+ + Sbjct: 174 MGKGSKERKVPLGKTAVTWLQHWLALR--ELFEPQDDAIFLANTGKRISARNVQKRFAEW 231 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ H LRHSFATH+L + GDLR++Q +LGH L+TTQIYT+++ ++ + Sbjct: 232 GVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----L 287 Query: 311 MEIYDQTHP 319 +YD HP Sbjct: 288 ATVYDAAHP 296 >gi|304407019|ref|ZP_07388673.1| integrase family protein [Paenibacillus curdlanolyticus YK9] gi|304344006|gb|EFM09846.1| integrase family protein [Paenibacillus curdlanolyticus YK9] Length = 316 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 85/318 (26%), Positives = 152/318 (47%), Gaps = 17/318 (5%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 ++L E ++ ++ E Q++L++ +R LS+ TL SYE D R F+ F A I Sbjct: 11 HSLSEGIAGQMETELQSFLRDWPADRSLSESTLMSYERDLRHFIRFAA-----DAGISAP 65 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 Q+ + + R + + SL R +++F +YL ++ T +M K + Sbjct: 66 EQVQKHHMARYWLTLRQEGRKNASLSRYRVSLRAFFRYLMDKQRVTADPTADMDAPKPDS 125 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 PR L Q +LL + + R+SAIL +Y G+R+SE ++L +++ Sbjct: 126 PPPRILTAVQV-----ELLLASPDPAEPSGLRDSAILETMYATGIRVSELIALDLEHVHV 180 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPG 241 +R K RIVP+ + ++ Y L + + + +F RG+ + Sbjct: 181 SLGFIRCSANA-KERIVPIGRAASASLEAYLQSGRERLLRDNSEEQAVFINRRGERMTRQ 239 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + +++ + T H+LRHSFA HLL NG D+R++Q ++GH L+ TQ Y ++ Sbjct: 240 GLWKIVKKHAALASIEGDLTPHSLRHSFAAHLLENGADVRAVQEMMGHAGLAATQKYVHL 299 Query: 302 NSKNGGDWMMEIYDQTHP 319 M E+Y+++HP Sbjct: 300 TKSR----MKEVYERSHP 313 >gi|161611265|ref|YP_294803.2| site-specific tyrosine recombinase XerD [Ralstonia eutropha JMP134] Length = 305 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 89/297 (29%), Positives = 143/297 (48%), Gaps = 17/297 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E GLS+ T+ +Y R+ L LA + + + + + TE+ A+ R + Sbjct: 22 LWLEDGLSRNTMDAY----RRDLSMLARWLHQS-SNGGLLGIGDTELNAYFLARHPETRA 76 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S R L+ + F ++ + ++ + +R K+ +P+ L+E Q LL Sbjct: 77 SSS-NRRLAVFRRFYQWALREQMIEADPCILLRPAKQPPRVPKTLSEAQV-----EALLE 130 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLL 203 T + R+ +L L+Y GLR+SE + I ++ R+ GKGDK R+VP Sbjct: 131 APDTTTPLGLRDRTMLELMYASGLRVSELTQMKTVEIGLNEGVARVVGGKGDKERLVPFG 190 Query: 204 PSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 + Y P L LF RG+ + F I++ R G+ + Sbjct: 191 MQASDWLRRYLGSARPALLAGRACDALFVTQRGEGMTRQAFWHLIKRHARDAGITAPLSP 250 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V + + E++ Q HP Sbjct: 251 HTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARER----LRELHQQHHP 303 >gi|167718388|ref|ZP_02401624.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei DM98] Length = 299 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 85/277 (30%), Positives = 135/277 (48%), Gaps = 15/277 (5%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 +E GLS+ TL +Y D + F +LA ++ + + TE +I+ R K Sbjct: 20 LEHGLSRNTLDAYRRDLQLFAQWLA--ARHAASVDHASEPTLTE---YIAARSDGKAT-- 72 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R LS + + + + L + + K++ P L+E Q L+ + T Sbjct: 73 SSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTP 132 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 + R+ +L L+Y GLR+SE ++L + ++ +R+ GKG K R+VP V Sbjct: 133 -----LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPF-GEV 186 Query: 207 RKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 +E Y D P L LF RG + F I++ + + + + HT Sbjct: 187 AHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHT 246 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 LRH+FATHLL++G DLR +Q +LGH +STTQIYT+V Sbjct: 247 LRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 283 >gi|330685662|gb|EGG97303.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU121] Length = 297 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 89/306 (29%), Positives = 154/306 (50%), Gaps = 30/306 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L++ER S TL+SY D QF FL Y E + Y + R ++S + Sbjct: 8 FLYMLKVERNFSDHTLKSYRDDIVQFNDFL--YQES----LDLNDFEYKDARNYLSFLYS 61 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + ++ R +S +++F +Y + + + + + + KK LP+ E++ Sbjct: 62 KNLKRTTVSRKISTLRTFYEYWMTQDESVVNPFVQLVHPKKEQYLPQFFYEEEM-----E 116 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 L T R+ IL LLY G+R+SE + + Q++ +++ GKG+K R + Sbjct: 117 ALFKTVETDSKKGMRDKVILELLYATGIRVSELVHIKTQDLDMKLPGVKVLGKGNKERFI 176 Query: 201 PL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQ--LRRY 253 P S+ + + E+ L D + L ++G+P+ GV RY+ ++R Sbjct: 177 PFGEFCKQSIERYLKEFKPLKHVDHDY-----LIVNMQGQPITERGV--RYVLNDVVKRT 229 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ + H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++ + ++ Sbjct: 230 SGVT-NIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ----LRKV 284 Query: 314 YDQTHP 319 Y HP Sbjct: 285 YLNAHP 290 >gi|290477110|ref|YP_003470023.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004] gi|289176456|emb|CBJ83265.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004] Length = 304 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 91/314 (28%), Positives = 157/314 (50%), Gaps = 32/314 (10%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 LL+ + +L L +ER LS LT+ +Y R+ L+ LA + + + I + L ++R Sbjct: 8 LLEPVETFLHYLRVERRLSPLTITNY----RRHLVVLASMSLD-MGIHEWQALDPAKVRM 62 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 F S+ R + SL LS +++FL ++ + + + +K LP+ ++ + Sbjct: 63 FASRSRRAGLQSASLALRLSSLRTFLDWMVIQGELDANPAKAVSAPRKKRHLPKNMDVDE 122 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L+ N+ L+ + R+ ++ ++YG GLR+SE + L +++ + +QGK Sbjct: 123 VNQLL-NINLNDP-----LSVRDRTMMEVMYGAGLRLSELVGLDCRHLELASGEVWVQGK 176 Query: 194 GDKIRIVPLLPSVRKAILEYYD--------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245 G K R VP V + LE+ P D + I + I + + Q Sbjct: 177 GSKERKVP----VGRIALEWLQRWLEMRELFEPEDNAVFISTKSGKRISARNVQKRFEQW 232 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 +RQ G+ H LRHSFATH+L + GDLR++Q +LGH LSTTQIYT+++ ++ Sbjct: 233 GVRQ-----GVNSHIHPHKLRHSFATHILESSGDLRAVQELLGHANLSTTQIYTHLDFQH 287 Query: 306 GGDWMMEIYDQTHP 319 + ++YD HP Sbjct: 288 ----LAKVYDVAHP 297 >gi|271502380|ref|YP_003335406.1| tyrosine recombinase XerC [Dickeya dadantii Ech586] gi|270345935|gb|ACZ78700.1| tyrosine recombinase XerC [Dickeya dadantii Ech586] Length = 302 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 82/298 (27%), Positives = 145/298 (48%), Gaps = 17/298 (5%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L+ L +ER LS LT +SY Q + + + +T + L +RA +++ + Sbjct: 15 LRYLRVERQLSPLTQRSY---AHQLQVIIEMLSASGVTDWS--SLDAAGVRAVVARSKRD 69 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 + SL + LS ++SFL +L R + + K LP+ ++ + L+D Sbjct: 70 GLNAASLAQRLSALRSFLDWLVGRGELKANPARGVPAPKAGRHLPKNMDVDEMDRLLDID 129 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 L + R+ A+L ++YG GLR++E + L ++ + + + GKG K R +P Sbjct: 130 L------NDPLAVRDRAMLEVMYGAGLRLAELVGLDCGHVNLESGEIWVMGKGSKERKLP 183 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 + + + + L D+ +F G+ ++ Q+ + G+ Sbjct: 184 VGATAVTWLTHW--LAIRDIYAPEDDAVFVSSLGRRISMRNVQKRFAEWGVKQGVNSHVH 241 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHSFATH+L + GDLR++Q +LGH LSTTQIYT+++ ++ + +YD HP Sbjct: 242 PHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHP 295 >gi|187931223|ref|YP_001891207.1| site-specific recombinase [Francisella tularensis subsp. mediasiatica FSC147] gi|187712132|gb|ACD30429.1| site-specific recombinase [Francisella tularensis subsp. mediasiatica FSC147] Length = 292 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 90/315 (28%), Positives = 162/315 (51%), Gaps = 31/315 (9%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 L+ N+L NL + S+ T+ +Y+ D Q + ++ + I L++++I + Sbjct: 4 LEHINNFLDNLLYLKNYSQETINNYQRDLLQL--------NQALSDKNIISLTHSDILIW 55 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 I K Q ++L+R LS ++SF +L +I +++ ++ K S LP+ +N + Sbjct: 56 IKKLHAQGNSPKTLQRKLSSVRSFFNFLINSEIVSQNPANGIKAPKDSKRLPKVVNTDEL 115 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 L+D ++ S++ I+AR+ A LLY CG+R+SE S+ ++I Q +R+ GKG Sbjct: 116 AYLLD---INPSND---IEARDIACFDLLYSCGIRLSELSSVELKDISISQKNIRVTGKG 169 Query: 195 DKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 +K RIV L ++ + + L P LF GK L Q+ + Sbjct: 170 NKQRIVYFGTKTLSNLSRWLKIRDSLKPS------SDYLFISRDGKHLTNRSIQKRLEIF 223 Query: 251 -RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 ++Y + H LRHSFA+H+L + DL +++ +LGH +S+TQIYT++N + Sbjct: 224 AQKYASRHIH--PHMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQ---- 277 Query: 310 MMEIYDQTHPSITQK 324 + ++D+ HP +K Sbjct: 278 LASVFDKAHPRAKKK 292 >gi|320539384|ref|ZP_08039053.1| site-specific tyrosine recombinase [Serratia symbiotica str. Tucson] gi|320030509|gb|EFW12519.1| site-specific tyrosine recombinase [Serratia symbiotica str. Tucson] Length = 303 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 89/300 (29%), Positives = 150/300 (50%), Gaps = 21/300 (7%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L+ L++ER LS LT SY Q L+ LA + I + L +R + + Sbjct: 16 LRYLKVERQLSPLTQLSY-AHQLQALMLLA----QSIGVSEWTSLDAAAVRMLAVRSKRA 70 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 + SL LS ++SFL +L + + + +R + LP+ ++ + L+D Sbjct: 71 GLQSASLALRLSSLRSFLDWLVSQGVLNANPAKGIRTPRSGRHLPKNIDVDEMNQLLDID 130 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 L + R+ A+L +YG GLR+SE + L ++I + + GKG K R +P Sbjct: 131 L------NDPLAVRDRAMLETMYGAGLRLSELVGLDCRHIDLAAGEIWVMGKGSKERKLP 184 Query: 202 LLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 L R A+ L+++ L +L +F +G+ ++P Q+ + G+ Sbjct: 185 L---GRTAVTWLQHW-LAIRELFEPEDDAIFLSNQGRRISPRNVQKRFAEWGVKQGVNSH 240 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHSFATH+L + GDLR++Q +LGH L+TTQIYT+++ ++ + ++YD HP Sbjct: 241 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----LAKVYDAAHP 296 >gi|302528010|ref|ZP_07280352.1| tyrosine recombinase XerD [Streptomyces sp. AA4] gi|302436905|gb|EFL08721.1| tyrosine recombinase XerD [Streptomyces sp. AA4] Length = 310 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 90/307 (29%), Positives = 145/307 (47%), Gaps = 21/307 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +L +L +ERG ++ TL SY D R++ L E + + +++ + +F + R Sbjct: 14 TYLDHLVVERGTARNTLDSYSRDLRRYAAHL-----EAAGVVRLAEVTPAHVTSFGAALR 68 Query: 80 T-----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 Q + S R+L ++ K+ +T ++R + LP+AL Sbjct: 69 EGDEEHQPLAASSAARALVAVRGLHKFAHADGLTEHDPARDVRPPAAAKRLPKALPVADV 128 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 L L+D T R+ A+L LLY G RISEA+ L ++ D + T+ + GKG Sbjct: 129 LKLLD-----TPPRDGERALRDRALLELLYSTGARISEAVGLDVDDVDDTERTVLLDGKG 183 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRR 252 K R+VP+ +A+ Y L N + +F RG L+ + ++ Sbjct: 184 GKQRLVPIGRPALEALDAYLVRARPALAANGRGTSAIFLNARGSRLSRQSAWQVLKDTAE 243 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 G+ + + HTLRHSFATHLL G D+R +Q +LGH ++TTQ+YT V + E Sbjct: 244 RAGITAAVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTVTT----LRE 299 Query: 313 IYDQTHP 319 +Y HP Sbjct: 300 VYATAHP 306 >gi|157377259|ref|YP_001475859.1| tyrosine recombinase XerC [Shewanella sediminis HAW-EB3] gi|157319633|gb|ABV38731.1| tyrosine recombinase XerC [Shewanella sediminis HAW-EB3] Length = 301 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 90/315 (28%), Positives = 152/315 (48%), Gaps = 37/315 (11%) Query: 21 WLQNLE----IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI----- 71 W Q E ER LSK T+++Y Y E+++ + S+ ++ Sbjct: 5 WFQKFESYLSAERQLSKHTVRNY------------LYELERVSKRLDETTSWLDVTREQL 52 Query: 72 RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131 + +S+ Q + RS+ +LS IK F +L + +++ K++ LP+ ++ Sbjct: 53 QGALSQIHRQGLSPRSISLTLSAIKQFCDFLLAEGAIQANPAMSLSAPKQNKPLPKNMD- 111 Query: 132 KQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 +D+V LL + + R+ AI+ L Y GLR++E +L ++I + ++ Sbjct: 112 ------LDSVTHLLEIDGDDP-LSVRDKAIMELFYSSGLRLAELAALDVKDIDFGERQVK 164 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 + GKG K RIVP+ AI E + C + LF +GK L Q + + Sbjct: 165 VMGKGSKERIVPIGNMAMNAI-ECWLTCRKGIVCE-DGALFVTGKGKRLAHRSIQARLAK 222 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 + L + H LRHSFATH+L + DLR++Q +LGH LSTTQIYT+++ ++ Sbjct: 223 WGQEQALNMRVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQIYTSLDFQH---- 278 Query: 310 MMEIYDQTHPSITQK 324 + ++YD HP K Sbjct: 279 LAKVYDGAHPRAKAK 293 >gi|163748706|ref|ZP_02155959.1| integrase/recombinase XerC [Shewanella benthica KT99] gi|161331816|gb|EDQ02620.1| integrase/recombinase XerC [Shewanella benthica KT99] Length = 308 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 91/320 (28%), Positives = 154/320 (48%), Gaps = 33/320 (10%) Query: 20 NWLQNLEI----ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAF 74 NW + E ER LS T+++Y + + L EE + + ++S+ +I+ Sbjct: 4 NWFKRFESYCRSERQLSAHTVRNYLYELHRVSAKL----EENACLSFLWSEVSHEQIQHV 59 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 + + Q + RSL +LS +K F +L + + ++ K++ LP+ ++ Sbjct: 60 LGQLHRQGLSPRSLSLTLSAVKQFCDFLLGEGVINANPAKSLSAPKQNKPLPKNMDLDSV 119 Query: 135 LTLVDNVLLHTSHETKWIDA------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 L++ IDA R+ AI+ L Y GLR++E +L I + + Sbjct: 120 THLLE------------IDADDLLSVRDKAIMELFYSSGLRLAELAALDVLAIRFAERQV 167 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 ++ GKG K RIVP+ +AI + L + L LF +GK L Q + Sbjct: 168 KVLGKGSKERIVPVGRCAIQAIQAWLAL--RESILCQDEALFVTAKGKRLAHRSIQARLA 225 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 + + L + H LRHSFATH+L + DLR++Q +LGH LSTTQIYT+++ ++ Sbjct: 226 KWGQEQALNMRVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQIYTSLDFQH--- 282 Query: 309 WMMEIYDQTHPSITQKDKKN 328 + ++YD HP ++ K N Sbjct: 283 -LAKVYDGAHPRASRAKKLN 301 >gi|309775337|ref|ZP_07670345.1| putative tyrosine recombinase XerD [Erysipelotrichaceae bacterium 3_1_53] gi|308916919|gb|EFP62651.1| putative tyrosine recombinase XerD [Erysipelotrichaceae bacterium 3_1_53] Length = 309 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 84/299 (28%), Positives = 142/299 (47%), Gaps = 19/299 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +LQ I + L+ TL++Y+ D +QFL F+ Y+ + + + A+I+ Sbjct: 13 YLQECSIAKELNAHTLKAYQIDLKQFLSFMELYSYD---------IQKESLHAYITHLHK 63 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN-LKKSNSLPRALNEKQALTLVD 139 +++KR ++ I + YL + + +R ++ LPR + ++ Sbjct: 64 TYQKPKTIKRKIASINALFSYLVFHDFIETNPMSRLRTAFREPRLLPRTIPNSHLSSIFS 123 Query: 140 NVL-----LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 V TS++ K + RN+A+L LL+ G+R+SE + I + +RI GKG Sbjct: 124 RVYDEMKDCKTSYQRK-VCTRNAAVLELLFSTGMRVSELCHVKDDEINLRERYVRIYGKG 182 Query: 195 DKIRIVPLL-PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 K RI+ + P V K + Y L F + F G PL+ + I + + Sbjct: 183 AKERILQIGNPDVLKILYSYRAL--FQKEIETSGYFFINKLGNPLSEQSVRLLIARYEKI 240 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 L +P T H RH+FAT LL D+R IQ ILGH ++TTQIYT+++S + + + Sbjct: 241 LKIPQHLTPHMFRHTFATQLLEEDVDIRYIQHILGHSSITTTQIYTHISSNKQKEILYQ 299 >gi|167585653|ref|ZP_02378041.1| site-specific tyrosine recombinase XerD [Burkholderia ubonensis Bu] Length = 315 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 139/297 (46%), Gaps = 19/297 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E GL++ TL +Y D F +LA + + + + +I+ R K Sbjct: 34 LWLEHGLARNTLDAYRRDLALFAQWLAATHDASLDVA-----DEMMVTGYIAARSDGKA- 87 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S R LS + + + + + L + + K++ P L+E Q L+ + Sbjct: 88 -TSSNRRLSVFRRYYGWAVREHRASADPTLRITSAKQAARFPSTLSEAQVEALLGAPDVD 146 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 T + R+ +L L+Y GLR+SE ++L + ++ +R+ GKG K R+VP Sbjct: 147 TP-----LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPF-G 200 Query: 205 SVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 V +E Y P L LF RG + F I++ R + + Sbjct: 201 EVAHGWIERYLRHARPALLGARAADALFVTARGDGMTRQQFWNIIKRHARQADVRAHLSP 260 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V + + ++ Q HP Sbjct: 261 HTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARER----LRTLHAQHHP 313 >gi|91791760|ref|YP_561411.1| tyrosine recombinase XerC [Shewanella denitrificans OS217] gi|91713762|gb|ABE53688.1| Tyrosine recombinase XerC [Shewanella denitrificans OS217] Length = 321 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 92/303 (30%), Positives = 145/303 (47%), Gaps = 26/303 (8%) Query: 31 LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90 + L+L Y T Q + T+E+ LS+ ++A ++K Q + RSL Sbjct: 40 FTTLSLPEYAAQTSQTNAITSPQTDEQWLA-----LSHEALQALLAKLHRQGLSPRSLSL 94 Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--LLHTSHE 148 LS +K F +YL T + + K++ LP+ ++ VD + LL + Sbjct: 95 CLSALKQFFEYLLAEDCITHNPAKGLSAPKQAKPLPKNID-------VDAISHLLAIDGD 147 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 + R+ AI+ L Y GLR+ E SL +I +++ GKG K R VP V K Sbjct: 148 DPLV-IRDRAIMELFYSSGLRLGELASLNYGDIHLGLQEVKVLGKGGKERRVP----VGK 202 Query: 209 AILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 +E L L +Q LF +GK L+ Q + + + L + H L Sbjct: 203 LAMEALALWHTQRLLLVQADEPALFVSNQGKRLSHRSIQARMAKWGQNQALSVPVHPHKL 262 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325 RHSFATH+L + GDLR++Q +LGH LSTTQIYT+++ ++ + ++YD HP + Sbjct: 263 RHSFATHMLESSGDLRAVQELLGHANLSTTQIYTSLDFQH----LAKVYDGAHPRAKKGR 318 Query: 326 KKN 328 +K Sbjct: 319 EKG 321 >gi|56696516|ref|YP_166873.1| tyrosine recombinase XerD [Ruegeria pomeroyi DSS-3] gi|56678253|gb|AAV94919.1| tyrosine recombinase XerD [Ruegeria pomeroyi DSS-3] Length = 319 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 93/294 (31%), Positives = 142/294 (48%), Gaps = 24/294 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +L E G + TL +Y D + F +L E + T+ + A++ Sbjct: 14 TFLDAQAAELGAANNTLLAYGRDLKDFTDWL----ERRGA--TLNGAERDTVEAYLVDCD 67 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q + + R LS IK ++ ++ + ++ + SLP+ L + VD Sbjct: 68 AQGLARATRARRLSAIKQLYRFAFDEGWRADNPAIQIKGPGRLKSLPKTLE----VIEVD 123 Query: 140 NVLLHTSHETKWIDA---RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 LL + +T A RN+ ++ LLY G+R+SE +SL D L ++GKG K Sbjct: 124 R-LLEAARQTGRTSADRLRNTCLMELLYATGMRVSELVSLPATAARGDPRMLLVRGKGGK 182 Query: 197 IRIVPLLPSVRKAILEYY---DLCPFD-----LNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 R+VPL P R A+ + D D + + L RG G L F I+ Sbjct: 183 ERMVPLSPPARAALAAWLTVRDAAEEDGARRGIARSPHLFPSRGKSGH-LTRHRFYLLIK 241 Query: 249 QLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +L G+ P + T HTLRH+FATHLL+NG DLR+IQ++LGH +STT+IYT+V Sbjct: 242 ELAVAGGVSPDTVTPHTLRHAFATHLLANGADLRTIQTLLGHADVSTTEIYTHV 295 >gi|269836497|ref|YP_003318725.1| integrase family protein [Sphaerobacter thermophilus DSM 20745] gi|269785760|gb|ACZ37903.1| integrase family protein [Sphaerobacter thermophilus DSM 20745] Length = 306 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 87/294 (29%), Positives = 141/294 (47%), Gaps = 11/294 (3%) Query: 15 LKER-QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 ++ER + +L L +RG S T+ +Y D QF FL E+ +Q+ +L+ T + Sbjct: 1 MEERIERFLAALGRDRGFSPNTVSAYRNDLSQFCHFLC----EQHVLQSWAELTGTILTN 56 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 ++ R + + ++ R ++ +KSF YL + + + K +PRA+ +Q Sbjct: 57 YVLYLRERGYANATVARKVAAVKSFCHYLVECGELRHDPAAELPSPKVDKFIPRAITPEQ 116 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 V+ +L + E R+ A+L LY G+R+SE +L ++ + +R K Sbjct: 117 ----VEALLAQPARERTPEALRDKAMLETLYASGMRVSELTALNVDDLDLEAGRVRCGNK 172 Query: 194 GDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 ++ R VPL S A+ EY L PF + LF RG L F ++ Sbjct: 173 PERQRWVPLSSSAIAALDEYLQLGRPFLRQSPAEQALFLNHRGSRLTRQGFWLILKSYAE 232 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 L T HTLRH+FA H L+ G LR +Q +LGH +STTQ+Y V ++ G Sbjct: 233 AAELG-DITPHTLRHTFAAHALTRGRALREVQQVLGHVSISTTQVYQQVAAQVG 285 >gi|87309301|ref|ZP_01091437.1| integrase/recombinase [Blastopirellula marina DSM 3645] gi|87287940|gb|EAQ79838.1| integrase/recombinase [Blastopirellula marina DSM 3645] Length = 291 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 86/299 (28%), Positives = 144/299 (48%), Gaps = 22/299 (7%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L+ E L+ T+ +Y D +F E + + IR L E+ +++ +++ Sbjct: 9 LQSECHLAANTVAAYRRDLVRF--------ERWLGAREIRTLRVGELSDYVAWLYKEELA 60 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S+ R++ +K F +YL+ I + N+ L S + R + A +D++L Sbjct: 61 PASIARAVVSLKIFFRYLQLEGILQD----NLVELLGSQKIWRRIPSVIAPHKIDDLLTA 116 Query: 145 T-SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 S + W R+ A+L +LY G R SE L ++ D+ ++ +GKG K RI PL Sbjct: 117 PWSEDPYW--RRDRALLEVLYATGCRASEVSGLRMDDVHLDEGYVKCEGKGSKQRIAPLA 174 Query: 204 PSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 + + Y D L NL LF GK L+ +++ G+ Sbjct: 175 QKSARVVKTYLDEERPRLSKKNLRDAAFLFLSRSGKRLSRIAIWELVKKYAARAGIDPDV 234 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H+LRHSFATHLL+ G DLR +Q ++GH ++TTQIYT+V+ + +++ Q HP Sbjct: 235 SPHSLRHSFATHLLAGGADLRHVQEMMGHASIATTQIYTHVDQSR----LKKVHAQYHP 289 >gi|239636270|ref|ZP_04677272.1| tyrosine recombinase XerC [Staphylococcus warneri L37603] gi|239597625|gb|EEQ80120.1| tyrosine recombinase XerC [Staphylococcus warneri L37603] Length = 297 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 90/309 (29%), Positives = 159/309 (51%), Gaps = 30/309 (9%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 ++ +L L++ER S TL+SY D QF FL Y E + Y + R ++S Sbjct: 5 QKAFLYMLKVERHFSDHTLKSYHDDIVQFNDFL--YQES----LDLNDFEYKDARNYLSF 58 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 ++ + ++ R +S +++F +Y + + + + + + KK LP+ E++ L Sbjct: 59 LYSKNLKRTTVSRKISTLRTFYEYWMTQDESVVNPFVQLVHPKKEQYLPQFFYEEEMEAL 118 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 V + K + R+ IL LLY G+R+SE + + Q++ +++ GKG+K Sbjct: 119 FKTV---DTDSKKGM--RDKVILELLYATGIRVSELVHIKTQDLDMKLPGVKVLGKGNKE 173 Query: 198 RIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQ--L 250 R +P S+ + + E+ L D + L ++G+P+ GV RY+ + Sbjct: 174 RFIPFGEFCKQSIERYLKEFKPLKHVDHDY-----LIVNMQGQPITERGV--RYVLNDVV 226 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 +R G+ + H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++ + Sbjct: 227 KRTSGVT-NIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQ----L 281 Query: 311 MEIYDQTHP 319 ++Y HP Sbjct: 282 RKVYLNAHP 290 >gi|148652162|ref|YP_001279255.1| phage integrase family protein [Psychrobacter sp. PRwf-1] gi|148571246|gb|ABQ93305.1| tyrosine recombinase XerC subunit [Psychrobacter sp. PRwf-1] Length = 341 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 92/319 (28%), Positives = 150/319 (47%), Gaps = 19/319 (5%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 LL + WL L + R +S T+ +Y Q FLA + T RQL+ Sbjct: 33 LLPPVEQWLSELSV-RQMSAHTIDAYYAGLYQLACFLA-QAQLNWTRCDKRQLA-----K 85 Query: 74 FISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 +I+KR T + S+++ LS I+ F +L ++ + + + LP + Sbjct: 86 YIAKRLDTDALAISSVQQELSAIRHFYSWLIEQGQARINPTTGYQLKRAPRPLPSIADGD 145 Query: 133 QALTLVDNVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDD----QST 187 L++ + T + + WI R+ A+ LLY GLR+ E + L ++ D + Sbjct: 146 LIAQLLEQPMPDTPEQARLWI--RDKAMFELLYSSGLRVGELVGLNVADLRIDAKGERGE 203 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 +R+ GKG+K R+VP+ KAI Y + G L Q+ + Sbjct: 204 VRVTGKGNKTRLVPVGRQALKAINRYLPHRNLWEERGDRALFISEKHGTRLTTRAVQQRL 263 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 + G+ + H LRH FA+H+LS GDLR++Q +LGH +STTQIYT+V+ Sbjct: 264 KVAAARAGIAQNMYPHLLRHCFASHMLSGSGDLRAVQEMLGHSDISTTQIYTHVDF---- 319 Query: 308 DWMMEIYDQTHPSITQKDK 326 D + ++YD+ HP +Q+ K Sbjct: 320 DRLTQVYDKAHPRASQEKK 338 >gi|188578603|ref|YP_001915532.1| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv. oryzae PXO99A] gi|58425056|gb|AAW74093.1| integrase-recombinase XerD [Xanthomonas oryzae pv. oryzae KACC10331] gi|188523055|gb|ACD61000.1| tyrosine recombinase XerD [Xanthomonas oryzae pv. oryzae PXO99A] Length = 336 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 91/309 (29%), Positives = 146/309 (47%), Gaps = 23/309 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L E+G+++ TL+SY D + A + I + Y RA Sbjct: 41 ERFLDRFWAEQGVARQTLESYRRDLEGLARWRAGAGGGLLGIDRVALFDYLRWRA----- 95 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 RS R LS +++F + + + ++ + + SLP+AL E Q + Sbjct: 96 -QANYSPRSTARLLSTLRAFYGWCLRDGVRSDDPTALIDPPQLPRSLPKALTESQ----I 150 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + +L +T R+ A+L L+Y GLR+SE ++L + Q LR+ GKG K R Sbjct: 151 EALLAAPEVDTP-AGLRDRAMLELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDR 209 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNI-------QLPLFRGIRGKPLNPGVFQRYIRQLR 251 +VPL + + Y L N Q+PLF + L+ F +++ Sbjct: 210 LVPLGEESQHWLERYLREARPLLAANKPVAAVDGQVPLFIDAARQALSRQHFWALVKRYA 269 Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ P + H LRHSFATHLL++G DLR++Q +LGH LSTTQIYT V ++ + Sbjct: 270 AVAGIDPAMVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQH----L 325 Query: 311 MEIYDQTHP 319 +++ HP Sbjct: 326 QKLHASHHP 334 >gi|262190134|ref|ZP_06048420.1| tyrosine recombinase XerC [Vibrio cholerae CT 5369-93] gi|262033988|gb|EEY52442.1| tyrosine recombinase XerC [Vibrio cholerae CT 5369-93] Length = 311 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 81/306 (26%), Positives = 156/306 (50%), Gaps = 20/306 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L E+GLS T ++Y+ +L ++ + QL +R + + + Q + Sbjct: 24 LHTEKGLSLYTQRNYKQQLETMTQYLV-----QVGLSNWSQLDAAWVRQLVMQGKRQGMK 78 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--L 142 S+ LS ++SFL +L R + + +K +LP+ L+ VD + L Sbjct: 79 ASSIATRLSSLRSFLDFLILRGELEANPAKGVSAPRKQRTLPKNLD-------VDEMAQL 131 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202 L + + + R+ AI+ L+YG GLR++E +S+ +++ + +R+ GKG+K R V Sbjct: 132 LEVTDDDP-LSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVWF 190 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 ++ + ++ L L + + LF G ++ Q+ + + + + + Sbjct: 191 AGQAQEWVGKWLKLRS-QLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322 H LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ ++ + ++YDQ HP Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQH----LAQVYDQAHPRAR 305 Query: 323 QKDKKN 328 +K+K + Sbjct: 306 KKNKDD 311 >gi|121593407|ref|YP_985303.1| tyrosine recombinase XerD [Acidovorax sp. JS42] gi|222110117|ref|YP_002552381.1| tyrosine recombinase xerd [Acidovorax ebreus TPSY] gi|120605487|gb|ABM41227.1| tyrosine recombinase XerD [Acidovorax sp. JS42] gi|221729561|gb|ACM32381.1| tyrosine recombinase XerD [Acidovorax ebreus TPSY] Length = 303 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 85/314 (27%), Positives = 154/314 (49%), Gaps = 21/314 (6%) Query: 12 FELLKERQN----WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67 F +L + QN ++ L +E GLS+ TL +Y D L A + ++ + + Sbjct: 3 FAMLPDSQNAIDPFIDALWLEDGLSRNTLAAYRRD----LTLYAQWLAQQNPPLALDATA 58 Query: 68 YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLP 126 ++ + + R Q S R L+ ++ + + L++R+I + + ++ ++ +P Sbjct: 59 EHHLQGYFAARHAQTRAT-SANRRLTVLRRYFHWALRERRIAADPTV-RLQAARQPLRVP 116 Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 + L + Q LLH + + R+ +L L+Y GLR+SE ++L ++ + Sbjct: 117 KTLTQAQV-----EALLHAPDDATPLGLRDRTMLELMYASGLRVSELVTLKTFHLGLAEG 171 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQR 245 LR+ GKG K R+VP + + Y + Q LF RG ++ +F Sbjct: 172 VLRVMGKGGKERLVPFGEEAHRWLQRYLAEGRGAILGGQQTDDLFVTQRGAAMSRVMFWV 231 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 +++ + G+ + HTLRH+FATHLL++G DLR +Q +LGH +STT IYT+V + Sbjct: 232 IVKKCAQAAGITAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARER 291 Query: 306 GGDWMMEIYDQTHP 319 + ++ Q HP Sbjct: 292 ----LKALHAQHHP 301 >gi|238561655|ref|ZP_00441610.2| tyrosine recombinase XerD [Burkholderia mallei GB8 horse 4] gi|254208847|ref|ZP_04915195.1| tyrosine recombinase XerD [Burkholderia mallei JHU] gi|147750723|gb|EDK57792.1| tyrosine recombinase XerD [Burkholderia mallei JHU] gi|238524066|gb|EEP87501.1| tyrosine recombinase XerD [Burkholderia mallei GB8 horse 4] Length = 329 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 86/277 (31%), Positives = 137/277 (49%), Gaps = 15/277 (5%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 +E GLS+ TL +Y D + F +LA ++ + + TE +I+ R K Sbjct: 50 LEHGLSRNTLDAYRRDLQLFAQWLA--ARHAASVDHASEPTLTE---YIAARSDGKA--T 102 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R LS + + + + L + + K++ P L+E Q V+ +L Sbjct: 103 SSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQ----VEALLAAPD 158 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 +T + R+ +L L+Y GLR+SE ++L + ++ +R+ GKG K R+VP V Sbjct: 159 VDTP-LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPF-GEV 216 Query: 207 RKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 +E Y D P L LF RG + F I++ + + + + HT Sbjct: 217 AHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHT 276 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 LRH+FATHLL++G DLR +Q +LGH +STTQIYT+V Sbjct: 277 LRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 313 >gi|134301812|ref|YP_001121780.1| phage integrase family protein [Francisella tularensis subsp. tularensis WY96-3418] gi|134049589|gb|ABO46660.1| phage integrase family protein [Francisella tularensis subsp. tularensis WY96-3418] Length = 292 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 90/315 (28%), Positives = 162/315 (51%), Gaps = 31/315 (9%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 L+ N+L NL + S+ T+ +Y+ D Q + ++ + I L++++I + Sbjct: 4 LEHINNFLDNLLYLKNYSQETINNYQRDLLQL--------NQALSDKNIISLTHSDILIW 55 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 I K Q ++L+R LS ++SF +L +I +++ ++ K S LP+ +N + Sbjct: 56 IKKLHAQGNSPKTLQRKLSSVRSFFNFLINSEIISQNPANGIKAPKDSKRLPKVVNTDEL 115 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 L+D ++ S++ I+AR+ A LLY CG+R+SE S+ ++I Q +R+ GKG Sbjct: 116 AYLLD---INPSND---IEARDIACFDLLYSCGIRLSELSSVELKDISISQKNIRVTGKG 169 Query: 195 DKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 +K RIV L ++ + + L P LF GK L Q+ + Sbjct: 170 NKQRIVYFGTKTLSNLNRWLKIRDSLKPS------SDYLFISRDGKHLTNRSIQKRLEIF 223 Query: 251 -RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 ++Y + H LRHSFA+H+L + DL +++ +LGH +S+TQIYT++N + Sbjct: 224 AQKYASRHIH--PHMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQ---- 277 Query: 310 MMEIYDQTHPSITQK 324 + ++D+ HP +K Sbjct: 278 LASVFDKAHPRAKKK 292 >gi|58337280|ref|YP_193865.1| integrase-recombinase [Lactobacillus acidophilus NCFM] gi|227903866|ref|ZP_04021671.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796] gi|58254597|gb|AAV42834.1| integrase-recombinase [Lactobacillus acidophilus NCFM] gi|227868257|gb|EEJ75678.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796] Length = 302 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 84/283 (29%), Positives = 137/283 (48%), Gaps = 13/283 (4%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++LQN ER S T+ SY+ D + FL +E + ++ +I+ ++ Sbjct: 13 SYLQN---ERHYSSKTIASYKTDLLEVEKFL----KENGGYNGWKNITERDIQLYLQHLS 65 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 +K+ S R +S + SF ++L +RKI + + LP E + + D Sbjct: 66 DRKLARSSQLRQMSSLHSFYRFLTRRKIVQVDPTQQITLRRGEKKLPEFFYEPEIKQVFD 125 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 ++ K + RN A+ L Y G+R+SE SLT I T+ + GKG K R Sbjct: 126 SL-----SGDKPLTVRNLALFQLFYATGMRVSEVSSLTLNQIDLTMQTILVHGKGKKDRY 180 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 V ++++ +Y ++ L N P +F GKP++ Q +++ G+ Sbjct: 181 VAFDDKTKRSLTKYLEIARPKLLKNEDEPHVFLSNLGKPISNRGIQYVMQKTFNQAGISG 240 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 H LRH+FAT +++NG DLRS+Q +LGH LS TQIYT+V Sbjct: 241 KVHPHELRHTFATAMINNGADLRSVQELLGHSSLSATQIYTHV 283 >gi|154483615|ref|ZP_02026063.1| hypothetical protein EUBVEN_01319 [Eubacterium ventriosum ATCC 27560] gi|149735525|gb|EDM51411.1| hypothetical protein EUBVEN_01319 [Eubacterium ventriosum ATCC 27560] Length = 295 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 82/303 (27%), Positives = 147/303 (48%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + ++ L ++ S T SY+ D +F +L + I+ I+ ++ ++ +I Sbjct: 6 EEFILQLHTKKDTSSNTEISYKRDLTKFFEYLNIGS-----IEEIKNITKHDLEGYIKHL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 ++ R+++ IK+F YL +I + + ++ K +P L Q Sbjct: 61 SDIGRATTTISRNVASIKAFFAYLYDEEIMKSNPSVGLKAPKIIKKVPEILTVSQV---- 116 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + LL + + R+ A+L LLY G+R++E ++L ++ Q + + K R Sbjct: 117 -DALLEQPSKNSPKELRDKAMLELLYATGMRVTELITLKMDDVNLAQEYVVCHDR-KKER 174 Query: 199 IVPLLPSVRKAILEYY-DLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 IVP +KA++ Y D + L N + +F +G ++ F + I+ + G+ Sbjct: 175 IVPFGSDAKKALVRYITDGREYLLGDNEDSVIMFPNCQGGAMSRQGFWKLIKMYGKKAGI 234 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 T HTLRHSFA+HL+ NG DL+S+Q +LGH +STTQIY +G + E+Y + Sbjct: 235 ETELTPHTLRHSFASHLVENGADLKSVQEMLGHSDISTTQIYMT----SGNKRVREVYAK 290 Query: 317 THP 319 HP Sbjct: 291 AHP 293 >gi|84622421|ref|YP_449793.1| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|161899015|ref|YP_199478.2| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv. oryzae KACC10331] gi|84366361|dbj|BAE67519.1| integrase-recombinase XerD [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 323 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 91/309 (29%), Positives = 146/309 (47%), Gaps = 23/309 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L E+G+++ TL+SY D + A + I + Y RA Sbjct: 28 ERFLDRFWAEQGVARQTLESYRRDLEGLARWRAGAGGGLLGIDRVALFDYLRWRA----- 82 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 RS R LS +++F + + + ++ + + SLP+AL E Q + Sbjct: 83 -QANYSPRSTARLLSTLRAFYGWCLRDGVRSDDPTALIDPPQLPRSLPKALTESQ----I 137 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + +L +T R+ A+L L+Y GLR+SE ++L + Q LR+ GKG K R Sbjct: 138 EALLAAPEVDTP-AGLRDRAMLELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDR 196 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNI-------QLPLFRGIRGKPLNPGVFQRYIRQLR 251 +VPL + + Y L N Q+PLF + L+ F +++ Sbjct: 197 LVPLGEESQHWLERYLREARPLLAANKPVAAVDGQVPLFIDAARQALSRQHFWALVKRYA 256 Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ P + H LRHSFATHLL++G DLR++Q +LGH LSTTQIYT V ++ + Sbjct: 257 AVAGIDPAMVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQH----L 312 Query: 311 MEIYDQTHP 319 +++ HP Sbjct: 313 QKLHASHHP 321 >gi|84686929|ref|ZP_01014813.1| tyrosine recombinase XerD [Maritimibacter alkaliphilus HTCC2654] gi|84665126|gb|EAQ11606.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2654] Length = 315 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 85/295 (28%), Positives = 137/295 (46%), Gaps = 28/295 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ E S+ TL +Y D + F +L E+ + A++ Sbjct: 13 FLEAQAAELDASQNTLLAYGRDLKDFSGYLDRMGED------FGGADRATVEAYLIDCEA 66 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q + + R LS IK ++ + T++ L + K+ LP+ L+E L++ Sbjct: 67 QGLAVSTRARRLSAIKQIYRFAFEEGWRTDNPTLRITGPGKARRLPKTLSEDDVERLLNA 126 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 H + + RN+ ++ +LY G+R+SE ++L D L + GKG K R+V Sbjct: 127 ARQHGRTDADRL--RNACMMEVLYATGMRVSELVTLPVSAARGDPRMLLVMGKGGKERMV 184 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP---LNPGV----------FQRYI 247 PL P R A+ + D+ + R KP L P F I Sbjct: 185 PLSPPARAALAAWLDV------RDAAEDAARSKGAKPSRFLFPSTGKDGHLTRHRFHGLI 238 Query: 248 RQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + + G+ P + T H LRH+FATHLL++G DLR+IQ++LGH +STT+IYT+V Sbjct: 239 KDIAVAAGVSPETVTPHRLRHAFATHLLAHGADLRAIQTLLGHADVSTTEIYTHV 293 >gi|86148174|ref|ZP_01066472.1| tyrosine recombinase [Vibrio sp. MED222] gi|85834021|gb|EAQ52181.1| tyrosine recombinase [Vibrio sp. MED222] Length = 310 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 80/302 (26%), Positives = 149/302 (49%), Gaps = 16/302 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L E+GLS T ++Y+ L + ++ Q+ +R SK + + Sbjct: 24 LRSEKGLSLHTQRNYKQQLETMAAHLV-----TLGLKDWSQVDAAWVRQLASKGMREGMK 78 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S+ LS ++SF +L R T + + +K LP+ L+ + L+D Sbjct: 79 ASSIATRLSSLRSFFDFLVLRGEMTANPAKGVSAPRKQRPLPKNLDVDEVGQLLD----- 133 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 +E + R+ A++ ++YG GLR++E + + ++++ Q +R+ GKGDK R P Sbjct: 134 -VNEDDPLSIRDRAMMEVMYGAGLRLAELVGINLKDVLGRQGEIRVIGKGDKERKAPF-S 191 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 + K +E + +L + LF G ++ Q+ + + + + + H Sbjct: 192 GLAKEWVEKWLKVRGELASPGEPALFVSKLGTRISHRSVQKRMEEWGKKQSVASHISPHK 251 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 LRHSFATH+L + +LR++Q +LGH +STTQ+YT+++ ++ + + YDQ HP +K Sbjct: 252 LRHSFATHVLESSQNLRAVQELLGHENISTTQVYTHLDFQH----LAQAYDQAHPRARKK 307 Query: 325 DK 326 +K Sbjct: 308 NK 309 >gi|53725157|ref|YP_102186.1| site-specific tyrosine recombinase XerD [Burkholderia mallei ATCC 23344] gi|121601112|ref|YP_992015.1| site-specific tyrosine recombinase XerD [Burkholderia mallei SAVP1] gi|161723208|ref|YP_107488.2| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei K96243] gi|52428580|gb|AAU49173.1| tyrosine recombinase XerD [Burkholderia mallei ATCC 23344] gi|121229922|gb|ABM52440.1| tyrosine recombinase XerD [Burkholderia mallei SAVP1] Length = 305 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 86/277 (31%), Positives = 137/277 (49%), Gaps = 15/277 (5%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 +E GLS+ TL +Y D + F +LA ++ + + TE +I+ R K Sbjct: 26 LEHGLSRNTLDAYRRDLQLFAQWLA--ARHAASVDHASEPTLTE---YIAARSDGKAT-- 78 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R LS + + + + L + + K++ P L+E Q V+ +L Sbjct: 79 SSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQ----VEALLAAPD 134 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 +T + R+ +L L+Y GLR+SE ++L + ++ +R+ GKG K R+VP V Sbjct: 135 VDTP-LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPF-GEV 192 Query: 207 RKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 +E Y D P L LF RG + F I++ + + + + HT Sbjct: 193 AHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHT 252 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 LRH+FATHLL++G DLR +Q +LGH +STTQIYT+V Sbjct: 253 LRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 289 >gi|284048544|ref|YP_003398883.1| tyrosine recombinase XerD [Acidaminococcus fermentans DSM 20731] gi|283952765|gb|ADB47568.1| tyrosine recombinase XerD [Acidaminococcus fermentans DSM 20731] Length = 301 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 88/310 (28%), Positives = 149/310 (48%), Gaps = 24/310 (7%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 L KE +L+ L +E GL+ T +SY D R F ++ + + + +I A Sbjct: 10 LEKEINLFLEYLTVELGLAYNTRESYGRDLRLFAGWIK---------KPLEDVKREDILA 60 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 ++ + + S R L+ +K+F +++ E + + LP+ ++ ++ Sbjct: 61 YMRMLKVHQYAPTSASRKLAALKAFFRFMTAEGFLEEDPSEVVEAGTRGVVLPKVMSLEE 120 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L T+ R+ +L ++Y G+R+SE LSL ++ + + GK Sbjct: 121 V-----KQLFSAPDLTQPEGFRDRTMLEVMYATGMRVSELLSLKRASVNLETRYVIAYGK 175 Query: 194 GDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 G K R++PL + ++K + + L F N LF IRG + F + IR Sbjct: 176 GAKERLIPLGQYAIQYLKKYLAQVRPL--FVKNGKDDDSLFLTIRGTGMTRQRFWQIIRA 233 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 GL T H LRHSFATH+L NG DLR++Q +LGH +STTQIYT++ + Sbjct: 234 YGVKAGLQKPLTPHILRHSFATHMLDNGADLRTVQELLGHADISTTQIYTHLTNNR---- 289 Query: 310 MMEIYDQTHP 319 + +++D+THP Sbjct: 290 LKKVFDKTHP 299 >gi|72117696|gb|AAZ59959.1| tyrosine recombinase XerD subunit [Ralstonia eutropha JMP134] Length = 327 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 89/297 (29%), Positives = 143/297 (48%), Gaps = 17/297 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E GLS+ T+ +Y R+ L LA + + + + + TE+ A+ R + Sbjct: 44 LWLEDGLSRNTMDAY----RRDLSMLARWLHQS-SNGGLLGIGDTELNAYFLARHPETRA 98 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S R L+ + F ++ + ++ + +R K+ +P+ L+E Q LL Sbjct: 99 SSS-NRRLAVFRRFYQWALREQMIEADPCILLRPAKQPPRVPKTLSEAQV-----EALLE 152 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLL 203 T + R+ +L L+Y GLR+SE + I ++ R+ GKGDK R+VP Sbjct: 153 APDTTTPLGLRDRTMLELMYASGLRVSELTQMKTVEIGLNEGVARVVGGKGDKERLVPFG 212 Query: 204 PSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 + Y P L LF RG+ + F I++ R G+ + Sbjct: 213 MQASDWLRRYLGSARPALLAGRACDALFVTQRGEGMTRQAFWHLIKRHARDAGITAPLSP 272 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V + + E++ Q HP Sbjct: 273 HTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARER----LRELHQQHHP 325 >gi|320093555|ref|ZP_08025446.1| recombinase XerD [Actinomyces sp. oral taxon 178 str. F0338] gi|319979482|gb|EFW10953.1| recombinase XerD [Actinomyces sp. oral taxon 178 str. F0338] Length = 249 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 119/237 (50%), Gaps = 12/237 (5%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S+ R+ + I+ Y ++ +R K+ + LP+AL+ Q L+D H++ Sbjct: 1 SVARASAAIRGLHAYALRQGRVGADAAAEVRAPKQGSHLPKALSVDQVSRLLDAA--HSA 58 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQS-TLRIQGKGDKIRIVPLLP 204 + R++A+L LLY G R+SEA+ L +I +DD++ +R+ GKG K R+VPL Sbjct: 59 PGAAGL--RDAALLELLYATGARVSEAVGLAVDDIDLDDEAPVVRLFGKGRKERLVPLGS 116 Query: 205 SVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 + A+ Y +L + +F RG ++ IR+ GL + Sbjct: 117 YAKDALGAYLVRGRPELAARGRGSHAVFLNKRGAAMSRQSAWETIRRAASAAGLEAGVSP 176 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HTLRHSFATHLL G +R +Q +LGH + TTQIYT V + E+Y HP Sbjct: 177 HTLRHSFATHLLEGGASVRDVQELLGHASVQTTQIYTRVTVAA----LREVYWTAHP 229 >gi|319957731|ref|YP_004168994.1| tyrosine recombinase xerd subunit [Nitratifractor salsuginis DSM 16511] gi|319420135|gb|ADV47245.1| tyrosine recombinase XerD subunit [Nitratifractor salsuginis DSM 16511] Length = 276 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 91/288 (31%), Positives = 151/288 (52%), Gaps = 36/288 (12%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + + L+I +GLS ++ SY D RQ EE+ + +L I AF+S+ Sbjct: 10 EAFAEYLQIVKGLSPKSIDSYLTDLRQL-------AEEQ---GDLLKLETESILAFLSRF 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + R+L R L+ I +F+ + + K+ T + M + K+ LP+ L+ ++ + Sbjct: 60 DNK----RTLNRKLASINAFVNFCHREKLGTSRVKIPMARVPKT--LPKYLSHEE----I 109 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + L + T I R+ A++ LY G RISEAL++ +++D +R KG + R Sbjct: 110 EAGLRYIDRSTP-IGRRDYALILFLYASGCRISEALAVQRGDLVDGWLKIRY-AKGARER 167 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL P+ KA+ E+ +I P L+ RG+PL+ + +R +YLG+ Sbjct: 168 MVPLAPAALKALEEHLK------ESDIASPYLWLNYRGEPLSRVSAYKIVR---KYLGV- 217 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + H LRHSFAT L+ G DLR +Q +LGH L TTQIYT++ ++ Sbjct: 218 ---SPHVLRHSFATALILGGADLRVVQELLGHSSLITTQIYTHIERQH 262 >gi|260063566|ref|YP_003196646.1| putative site-specific recombinase [Robiginitalea biformata HTCC2501] gi|88783010|gb|EAR14184.1| putative site-specific recombinase [Robiginitalea biformata HTCC2501] Length = 297 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 82/301 (27%), Positives = 147/301 (48%), Gaps = 12/301 (3%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + + L +E+ + T+++Y D F + Y E+ + Y IR++I Sbjct: 4 EAFAKYLTLEKKYAAHTVKAYLADLDAF----SEYCREEQGEFALADQPYPVIRSWIIHL 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + +RS+ R ++ +KS+ KY ++ S + + LK +PR + + + + Sbjct: 60 MESGLNNRSVNRKVASLKSYYKYQLRQGRIDASPLAAHKPLK----IPRRVEIPFSESEM 115 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + +L + R+ ++ LLY G+R +E + L ++ +Q TLR+ GK DK R Sbjct: 116 EGLLGEWEPSEGYEAHRDKLVVELLYTTGMRRAELIGLKLGDVDLEQGTLRVTGKRDKER 175 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 I+PLLP + + I Y +L + LF RG L + R I + + Sbjct: 176 ILPLLPGIVREIRAYLELRGAHFKSGSEPHLFLTSRGNKLYENLVYRIINRYLSMVSAKS 235 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + H LRH+FATHLL+ G D+ S++ +LGH L++TQ+YT+ N + I+ +H Sbjct: 236 KRSPHILRHTFATHLLNQGADMNSVKELLGHSSLASTQVYTH----NSIAELKRIHGTSH 291 Query: 319 P 319 P Sbjct: 292 P 292 >gi|126455125|ref|YP_001065195.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei 1106a] gi|167737435|ref|ZP_02410209.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei 14] gi|167823028|ref|ZP_02454499.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei 9] gi|167909818|ref|ZP_02496909.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei 112] gi|226192850|ref|ZP_03788463.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pakistan 9] gi|242316366|ref|ZP_04815382.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1106b] gi|126228767|gb|ABN92307.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1106a] gi|225935100|gb|EEH31074.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pakistan 9] gi|242139605|gb|EES26007.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1106b] Length = 333 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 86/277 (31%), Positives = 137/277 (49%), Gaps = 15/277 (5%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 +E GLS+ TL +Y D + F +LA ++ + + TE +I+ R K Sbjct: 54 LEHGLSRNTLDAYRRDLQLFAQWLA--ARHAASVDHASEPTLTE---YIAARSDGKA--T 106 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R LS + + + + L + + K++ P L+E Q V+ +L Sbjct: 107 SSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQ----VEALLAAPD 162 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 +T + R+ +L L+Y GLR+SE ++L + ++ +R+ GKG K R+VP V Sbjct: 163 VDTP-LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPF-GEV 220 Query: 207 RKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 +E Y D P L LF RG + F I++ + + + + HT Sbjct: 221 AHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHT 280 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 LRH+FATHLL++G DLR +Q +LGH +STTQIYT+V Sbjct: 281 LRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 317 >gi|124383411|ref|YP_001028462.1| site-specific tyrosine recombinase XerD [Burkholderia mallei NCTC 10229] gi|254177062|ref|ZP_04883719.1| tyrosine recombinase XerD [Burkholderia mallei ATCC 10399] gi|254187507|ref|ZP_04894019.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pasteur 52237] gi|124291431|gb|ABN00700.1| tyrosine recombinase XerD [Burkholderia mallei NCTC 10229] gi|157935187|gb|EDO90857.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pasteur 52237] gi|160698103|gb|EDP88073.1| tyrosine recombinase XerD [Burkholderia mallei ATCC 10399] Length = 329 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 85/277 (30%), Positives = 135/277 (48%), Gaps = 15/277 (5%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 +E GLS+ TL +Y D + F +LA ++ + + TE +I+ R K Sbjct: 50 LEHGLSRNTLDAYRRDLQLFAQWLA--ARHAASVDHASEPTLTE---YIAARSDGKA--T 102 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R LS + + + + L + + K++ P L+E Q L+ + T Sbjct: 103 SSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTP 162 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 + R+ +L L+Y GLR+SE ++L + ++ +R+ GKG K R+VP V Sbjct: 163 -----LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPF-GEV 216 Query: 207 RKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 +E Y D P L LF RG + F I++ + + + + HT Sbjct: 217 AHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHT 276 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 LRH+FATHLL++G DLR +Q +LGH +STTQIYT+V Sbjct: 277 LRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 313 >gi|88861277|ref|ZP_01135909.1| site-specific recombinase [Pseudoalteromonas tunicata D2] gi|88816758|gb|EAR26581.1| site-specific recombinase [Pseudoalteromonas tunicata D2] Length = 305 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 86/309 (27%), Positives = 153/309 (49%), Gaps = 37/309 (11%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +LQ L+ E+ S TL Y + FL E + +Q ++RA+ + Sbjct: 18 FLQYLKYEKNYSIHTLLQYRLQLVEVANFLQNKAESWLKVQP------EQLRAYSMSLKA 71 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + R++ LS ++SF KYL+ RK + ++ K LP+ L+ Q + Sbjct: 72 RALSARTINLKLSCVRSFYKYLQIRKTELNNPAEAIKGPKFQKPLPKNLDVDQM-----H 126 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LL + E + R+ A++ L+Y GLR+SE ++ ++ + +R+ GKG+K RI+ Sbjct: 127 QLLAMNPEDSF-GFRDKAMMELMYSSGLRVSELVNANLIDVNLREKEIRVLGKGNKERIL 185 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLF----------RGIRGKPLNPGVFQRYIRQL 250 P+ +A+ ++ C + L ++ +F R +R + G+ Q Sbjct: 186 PIGGKAIEALQDWLK-CRAEFALPDEVAVFVSKKKCRISTRQVRARMKLWGINQ------ 238 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ H LRHSFA+H+L + GDLR++Q +LGH LS TQ+YT+++ ++ + Sbjct: 239 ----GISSQIHPHKLRHSFASHMLESSGDLRAVQELLGHSSLSATQVYTHLDFQH----L 290 Query: 311 MEIYDQTHP 319 ++YD THP Sbjct: 291 AKVYDNTHP 299 >gi|163787862|ref|ZP_02182309.1| integrase [Flavobacteriales bacterium ALC-1] gi|159877750|gb|EDP71807.1| integrase [Flavobacteriales bacterium ALC-1] Length = 296 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 83/295 (28%), Positives = 145/295 (49%), Gaps = 12/295 (4%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E+ SK T +Y D F FL EE + + ++ Y+EIR +I K I Sbjct: 10 LLLEKKYSKHTALAYIRDIEMFQDFL----EEHHDSEVLSKVGYSEIREWIVKLVNSGIS 65 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 +R++ R +S + ++ K+L K + + + + LK + +E++ +++N + Sbjct: 66 NRTVNRKISSLNTYFKFLIKTQTIKINPLKQHKALKVGKKVQLPFSEEELKAVLENSIEV 125 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 E+ ARN I+ L Y G+R E + +T +I L++ GK +K R +PL+ Sbjct: 126 HDFES----ARNHLIIELFYATGIRRIELVEITINDIDFGNKQLKVLGKRNKERYIPLID 181 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 S+ +I Y +N + LF +G + + R I + + H Sbjct: 182 SLIISIKNYLKYRSQLETINDKEVLFLTKKGLKIYEMLVYRIINKYFSEASTKAKCSPHV 241 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LRHSFATHLL+ G DL +++ +LGH L+ TQ+YT+ N + ++Y ++HP Sbjct: 242 LRHSFATHLLNQGADLNAVKELLGHTSLAATQVYTH----NSIAELKKVYAKSHP 292 >gi|186475291|ref|YP_001856761.1| site-specific tyrosine recombinase XerD [Burkholderia phymatum STM815] gi|184191750|gb|ACC69715.1| tyrosine recombinase XerD [Burkholderia phymatum STM815] Length = 315 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 87/280 (31%), Positives = 134/280 (47%), Gaps = 17/280 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E GL++ TL +Y D R F +LA + + S ++ A+ + R K Sbjct: 34 LWLEHGLARNTLDAYRRDLRLFSEWLAERRDASLDAA-----SEADLTAYSAARSADK-- 86 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S R LS + + + + + L +R+ K+ P L E Q LL Sbjct: 87 STSANRRLSVFRRYYAWAVREHRASADPTLRIRSAKQPPRFPSTLTEAQV-----EALLG 141 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 T + R+ +L L+Y GLR+SE ++L + ++ +R+ GKG K R++P Sbjct: 142 APDVTTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLIPFGE 201 Query: 205 SVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ--LRRYLGLPLSTT 261 I Y + P L LF R + + F I++ L ++ PLS Sbjct: 202 EAHAWIERYLRESRPALLGQRSADALFVTARAEGMTRQQFWNIIKRHALTAHVHAPLSP- 260 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V Sbjct: 261 -HTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHV 299 >gi|319788011|ref|YP_004147486.1| tyrosine recombinase XerD [Pseudoxanthomonas suwonensis 11-1] gi|317466523|gb|ADV28255.1| tyrosine recombinase XerD [Pseudoxanthomonas suwonensis 11-1] Length = 326 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 91/307 (29%), Positives = 149/307 (48%), Gaps = 36/307 (11%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87 ERGL++ +L +Y D L LA + + T + + +++ R G RS Sbjct: 39 ERGLARASLDAYRRD----LELLARWRDG--TGGGLVGADREALFGYLAWRAGHGYGPRS 92 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ--ALTLVDNVLLHT 145 R + +++F +L + + + + LP+A++E Q AL V +V + Sbjct: 93 NARLRACLRAFYAHLVLAGVRQDDPAALIDPPRMPRPLPKAMSESQVEALLGVPDVSIPE 152 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 R+ A+L L+Y GLR+SE ++L + Q +R++GKG K R+VPL Sbjct: 153 G-------LRDRAMLELMYAAGLRVSELVNLPANAVNLRQGVVRVRGKGSKERLVPLGEE 205 Query: 206 VRKAILEYYDLC--------PFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLGL 256 + + Y P + + ++PLF G R P Q + R ++R+ Sbjct: 206 SQDWLERYLRESRPALTGGRPVPADASGEVPLFIGASRSAPTR----QDFWRAIKRHAAA 261 Query: 257 ----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 P + T H LRHSFATHLL++G DLR++Q +LGH LSTTQIYT V ++ + Sbjct: 262 AGIDPRTVTPHGLRHSFATHLLNHGADLRALQLLLGHASLSTTQIYTLVAREH----LQR 317 Query: 313 IYDQTHP 319 ++ + HP Sbjct: 318 LHARHHP 324 >gi|162210085|ref|YP_332479.2| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei 1710b] Length = 305 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 85/277 (30%), Positives = 136/277 (49%), Gaps = 15/277 (5%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 +E GLS+ TL +Y D + F +LA + ++ S + +I+ R K Sbjct: 26 LEHGLSRNTLDAYRRDLQLFAQWLA-----ARHVASVDHASEPTLTEYIAARSDGKAT-- 78 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R LS + + + + L + + K++ P L+E Q V+ +L Sbjct: 79 SSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQ----VEALLAAPD 134 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 +T + R+ +L L+Y GLR+SE ++L + ++ +R+ GKG K R+VP V Sbjct: 135 VDTP-LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPF-GEV 192 Query: 207 RKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 +E Y D P L LF RG + F I++ + + + + HT Sbjct: 193 AHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHT 252 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 LRH+FATHLL++G DLR +Q +LGH +STTQIYT+V Sbjct: 253 LRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 289 >gi|126438545|ref|YP_001057962.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei 668] gi|126451016|ref|YP_001079697.1| site-specific tyrosine recombinase XerD [Burkholderia mallei NCTC 10247] gi|134279602|ref|ZP_01766314.1| tyrosine recombinase XerD [Burkholderia pseudomallei 305] gi|166998458|ref|ZP_02264318.1| tyrosine recombinase XerD [Burkholderia mallei PRL-20] gi|167814554|ref|ZP_02446234.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei 91] gi|167844587|ref|ZP_02470095.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei B7210] gi|167901578|ref|ZP_02488783.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei NCTC 13177] gi|217419758|ref|ZP_03451264.1| tyrosine recombinase XerD [Burkholderia pseudomallei 576] gi|254196593|ref|ZP_04903017.1| tyrosine recombinase XerD [Burkholderia pseudomallei S13] gi|254360098|ref|ZP_04976368.1| tyrosine recombinase XerD [Burkholderia mallei 2002721280] gi|52208916|emb|CAH34855.1| putative integrase/recombinase [Burkholderia pseudomallei K96243] gi|126218038|gb|ABN81544.1| tyrosine recombinase XerD [Burkholderia pseudomallei 668] gi|126243886|gb|ABO06979.1| tyrosine recombinase XerD [Burkholderia mallei NCTC 10247] gi|134248802|gb|EBA48884.1| tyrosine recombinase XerD [Burkholderia pseudomallei 305] gi|148029338|gb|EDK87243.1| tyrosine recombinase XerD [Burkholderia mallei 2002721280] gi|169653336|gb|EDS86029.1| tyrosine recombinase XerD [Burkholderia pseudomallei S13] gi|217397062|gb|EEC37078.1| tyrosine recombinase XerD [Burkholderia pseudomallei 576] gi|243065512|gb|EES47698.1| tyrosine recombinase XerD [Burkholderia mallei PRL-20] Length = 333 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 86/277 (31%), Positives = 137/277 (49%), Gaps = 15/277 (5%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 +E GLS+ TL +Y D + F +LA ++ + + TE +I+ R K Sbjct: 54 LEHGLSRNTLDAYRRDLQLFAQWLA--ARHAASVDHASEPTLTE---YIAARSDGKA--T 106 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R LS + + + + L + + K++ P L+E Q V+ +L Sbjct: 107 SSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQ----VEALLAAPD 162 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 +T + R+ +L L+Y GLR+SE ++L + ++ +R+ GKG K R+VP V Sbjct: 163 VDTP-LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPF-GEV 220 Query: 207 RKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 +E Y D P L LF RG + F I++ + + + + HT Sbjct: 221 AHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHT 280 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 LRH+FATHLL++G DLR +Q +LGH +STTQIYT+V Sbjct: 281 LRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 317 >gi|332828179|gb|EGK00891.1| hypothetical protein HMPREF9455_02680 [Dysgonomonas gadei ATCC BAA-286] Length = 294 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 81/295 (27%), Positives = 146/295 (49%), Gaps = 13/295 (4%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L E+ S T SY D QF+ FL +E ++ + IR +I KI Sbjct: 11 LRYEKNFSLHTEISYSTDLHQFVGFL----QEHFPEIDVKNVDSDIIRMWIVSLMEAKIA 66 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 RS+ R LS +KSF KYL + + + + + K +P +N ++ VL Sbjct: 67 ARSVNRKLSTLKSFYKYLLRIGEVSVNPVKKITGPKTPKPIPSFVNNGD----MEKVLEE 122 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 ++ + + RN ++ L Y G+R +E + L ++ T+++ GK +K R++P Sbjct: 123 SNFDNTFESLRNHIMIELFYVTGIRRAELIGLKDVDVDFSAETIQVTGKRNKQRLIPFSD 182 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 ++ + EY + ++ N+ LF G+ L P + R + + + + T+ H Sbjct: 183 GMKAMLEEYLNARNEEIG-NLSGYLFVKNDGQQLYPMLVHRIVTENLKQIPTLSKTSPHV 241 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LRHSFAT +L+NG D+ +++ +LGH L+ T+IYT+ + + + +IY++ HP Sbjct: 242 LRHSFATGMLNNGADINAVKELLGHSSLAATEIYTHTSFEE----LKKIYNKAHP 292 >gi|315444421|ref|YP_004077300.1| tyrosine recombinase XerD subunit [Mycobacterium sp. Spyr1] gi|315262724|gb|ADT99465.1| tyrosine recombinase XerD subunit [Mycobacterium sp. Spyr1] Length = 320 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 86/313 (27%), Positives = 149/313 (47%), Gaps = 25/313 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +L +L IERG++ TL SY D R++ L + + + ++ T++ F+ Sbjct: 18 QGYLDHLAIERGVAANTLSSYRRDLRRYAEHL-----KARGVGDLAAVTETDVSEFLVAL 72 Query: 79 RTQKIGDR----------SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 R +GD S R+L ++ ++ I +++ S LP++ Sbjct: 73 R---LGDPDGGVVPLSAVSAARALIAVRGLHRFAAAEGIAAIDVARDVKPPTPSRRLPKS 129 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 L+ + L L++ + ++ + RN A+L LLY G RISEA+ L ++ ++ Sbjct: 130 LSIDEVLALLEAAGGDSEADSP-LTLRNRALLELLYSTGARISEAVGLDIDDVDTSARSV 188 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRY 246 ++GKG K R++P+ A+ Y DL + +F RG L+ + Sbjct: 189 LLRGKGGKQRLIPIGRPAVTALETYLVRGRPDLARRGRGTPAIFLNARGGRLSRQSAWQV 248 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 ++ G+ + + H LRHSFATHLL G D+R +Q +LGH ++TTQIYT V Sbjct: 249 LQDAAGRAGVTATVSPHVLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMVTV--- 305 Query: 307 GDWMMEIYDQTHP 319 + + E++ HP Sbjct: 306 -NALREVWAGAHP 317 >gi|194288692|ref|YP_002004599.1| site-specific tyrosine recombinase xerd [Cupriavidus taiwanensis LMG 19424] gi|193222527|emb|CAQ68530.1| site-specific tyrosine recombinase [Cupriavidus taiwanensis LMG 19424] Length = 312 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 92/297 (30%), Positives = 144/297 (48%), Gaps = 17/297 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E GLS+ T+ +Y R+ L LA + + + + + + A+ S R TQ Sbjct: 29 LWLEDGLSRNTIDAY----RRDLTLLARWLQHEQRGELL-DADDGALSAYFSARHTQTRA 83 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S R L+ + F ++ + + L +R K+ P+ L+E Q V+ +L Sbjct: 84 S-SANRRLAVFRRFYQWALREHLVQVDPCLLLRPAKQPPRHPKTLSEAQ----VEALLEA 138 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLL 203 ET + R+ +L L+Y GLR+SE + I ++ R+ GKGDK R+VP Sbjct: 139 PDTETP-LGLRDRTMLELMYASGLRVSELTQMKTVEIGLNEGVARVVGGKGDKERLVPFG 197 Query: 204 PSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 + Y P L LF RG+ + F I++ R G+ + Sbjct: 198 QQAGDWLRRYLASARPVLLAGRACDALFVTQRGEGMTRQAFWHLIKRHARDAGVHAPLSP 257 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V + + E++ Q HP Sbjct: 258 HTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARER----LRELHQQHHP 310 >gi|330827985|ref|YP_004390937.1| Tyrosine recombinase XerC [Aeromonas veronii B565] gi|328803121|gb|AEB48320.1| Tyrosine recombinase XerC [Aeromonas veronii B565] Length = 325 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 86/318 (27%), Positives = 156/318 (49%), Gaps = 27/318 (8%) Query: 6 LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR- 64 LP ++ EL +++ L +ER LS T +Y+ L T E + + Sbjct: 19 LPAALADELAA----FIEYLRVERQLSPHTRNNYQA-------HLEAMTAELVALGLTDW 67 Query: 65 -QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 +L +++R +++ + RSL +S ++SF + ++ T + + K+ Sbjct: 68 GRLEASQVRTLVTRMHKAGLAPRSLSTKVSALRSFCDWQVRQGRLTANPARGIVTPKQGR 127 Query: 124 SLPRALNEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 LP+ L+ VD + LL+ + E + R+ AI+ L+Y GLR++E + + ++ Sbjct: 128 PLPKNLD-------VDEMHQLLNITDEQDPLAVRDRAIMELMYSSGLRLAELVGINLVDL 180 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241 D L++ GKG + R++P+ + + ++ + P L + LF R + L+ Sbjct: 181 KLDDRQLKVTGKGSRERVLPIGRMAVEWLQKWLKVRPL-LAGDESEALFVSSRKQRLSAR 239 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 Q + L H LRHSFATH+L + GDLR++Q +LGH LSTTQIYT++ Sbjct: 240 SVQARLDGWGNKQALNAHVHPHKLRHSFATHMLESSGDLRAVQELLGHADLSTTQIYTHL 299 Query: 302 NSKNGGDWMMEIYDQTHP 319 + ++ + ++YD HP Sbjct: 300 DFQH----LAKVYDSAHP 313 >gi|296113698|ref|YP_003627636.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis RH4] gi|295921392|gb|ADG61743.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis RH4] gi|326562438|gb|EGE12757.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 7169] gi|326569146|gb|EGE19208.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis BC1] Length = 330 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 94/305 (30%), Positives = 144/305 (47%), Gaps = 18/305 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +W L ++ SK T+ +Y+ QF FL R+ T R F ++ Sbjct: 29 SWCDELRLQ-NYSKHTITTYQTALIQFFNFLESDNYLGGDPLACRRQDLT--RFFSTRLE 85 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 +KI S K SLS I+ F ++L K+ + + + LP +E L+D Sbjct: 86 EEKIKPISAKLSLSAIRIFYQFLIKQGVIAVNPTTGYKIKSAPRKLPTVADELLIKQLLD 145 Query: 140 NVLLH-TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 T+ WI R+ A+ L+Y GLR+SE L ++ D +R+ GKG+K R Sbjct: 146 QKTPEDTAKACLWI--RDKAMFELMYSSGLRLSELAGLNMGDVNFDIGIVRVLGKGNKTR 203 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 VP+ +KA++ D P NL N + G L+ Q ++ Sbjct: 204 QVPV---GKKAMIALQDYLPHR-NLWQKKNCKALFISERHGTRLSTRAIQLRLKVCATMA 259 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ L+ H LRH FA+H+LS+ GDLR+IQ +LGH +STTQIYT+V+ + ++Y Sbjct: 260 GIELNMYPHLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHVDFGT----LTKVY 315 Query: 315 DQTHP 319 D HP Sbjct: 316 DHAHP 320 >gi|330826574|ref|YP_004389877.1| Tyrosine recombinase xerC [Alicycliphilus denitrificans K601] gi|329311946|gb|AEB86361.1| Tyrosine recombinase xerC [Alicycliphilus denitrificans K601] Length = 299 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 89/312 (28%), Positives = 149/312 (47%), Gaps = 21/312 (6%) Query: 14 LLKERQN----WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69 +L E QN +L L +E GLS+ TL +Y D + +LA T Sbjct: 1 MLPESQNAIDSFLDALWLEDGLSRNTLAAYRRDLSLYAGWLAAQQPPLALDATAEH---- 56 Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRA 128 + + + R Q S R L+ ++ + + L++R+I + + + ++ +P+ Sbjct: 57 HLSGYFAARHAQTRAT-SANRRLTVLRRYFHWALRERRIAQDPTV-RLLAARQPLRVPKT 114 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 L + Q LLH + R+ +L L+Y GLR+SE ++L + + L Sbjct: 115 LTQAQV-----EALLHAPDTATALGLRDRTMLELMYASGLRVSELVTLKTFQLGLAEGVL 169 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYI 247 RI GKG K R+VP R+ + Y + Q LF RG ++ +F + Sbjct: 170 RITGKGGKERLVPFGEEARRWLERYLAEGRGAILAGRQTDDLFVTQRGSAMSRVMFWVIV 229 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 ++ + G+ + HTLRH+FATHLL++G DLR +Q +LGH +STT IYT+V + Sbjct: 230 KKCAQLAGITAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARER-- 287 Query: 308 DWMMEIYDQTHP 319 + +++ Q HP Sbjct: 288 --LKQLHAQHHP 297 >gi|254448959|ref|ZP_05062414.1| tyrosine recombinase XerC [gamma proteobacterium HTCC5015] gi|198261496|gb|EDY85786.1| tyrosine recombinase XerC [gamma proteobacterium HTCC5015] Length = 301 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 87/309 (28%), Positives = 144/309 (46%), Gaps = 15/309 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +LQ+L ER S TL +Y D + ++ + I +Q+ ++R F + Sbjct: 2 QRYLQHLMAERRYSSHTLDNYRRDLKALCDYIG-----PLPI-DWQQVIGQDVRDFAAAS 55 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + RS+ R LS + F ++L + + + + LP L+ + L+ Sbjct: 56 HRGGLASRSIARRLSAARGFFQFLIREGQLQANPAQGVPAPRGEKKLPEVLDADRLQHLL 115 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + D R AIL L Y GLR++E +L ++ + L + GKG K R Sbjct: 116 DAP--SQRDDANSADVRERAILELFYSTGLRLAELAALDCADLRHQERDLEVVGKGSKAR 173 Query: 199 IVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 V + R+++ ++ + L + LF RG L+ Q+ I + G Sbjct: 174 HVMVGGKARESLDDWLAVRSQWLEGSGAKREDALFINQRGGRLSVRGIQQRIADYAQRRG 233 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 L + H LRHSFATHLL + GDLR++Q +LGH + TTQIYT+++ ++ + YD Sbjct: 234 LDRNLHPHMLRHSFATHLLESSGDLRAVQKLLGHANIGTTQIYTHLDFQH----LANTYD 289 Query: 316 QTHPSITQK 324 + HP +K Sbjct: 290 KAHPRAKRK 298 >gi|254258575|ref|ZP_04949629.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1710a] gi|254217264|gb|EET06648.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1710a] Length = 333 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 85/277 (30%), Positives = 136/277 (49%), Gaps = 15/277 (5%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 +E GLS+ TL +Y D + F +LA + ++ S + +I+ R K Sbjct: 54 LEHGLSRNTLDAYRRDLQLFAQWLAARH-----VASVDHASEPTLTEYIAARSDGKA--T 106 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R LS + + + + L + + K++ P L+E Q V+ +L Sbjct: 107 SSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQ----VEALLAAPD 162 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 +T + R+ +L L+Y GLR+SE ++L + ++ +R+ GKG K R+VP V Sbjct: 163 VDTP-LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPF-GEV 220 Query: 207 RKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 +E Y D P L LF RG + F I++ + + + + HT Sbjct: 221 AHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHT 280 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 LRH+FATHLL++G DLR +Q +LGH +STTQIYT+V Sbjct: 281 LRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 317 >gi|326571339|gb|EGE21356.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis BC8] Length = 331 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 97/309 (31%), Positives = 146/309 (47%), Gaps = 26/309 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +W L ++ SK T+ +Y+ QF FL R+ T R F ++ Sbjct: 29 SWCDELRLQ-NYSKHTITTYQTALIQFFNFLESDNYLGGDPLACRRQDLT--RFFSTRLE 85 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 +KI S K SLS I+ F ++L K+ + +N K S PR L L+ Sbjct: 86 EEKIKPISAKLSLSAIRIFYQFLIKQGVIA----VNPTTGYKIKSAPRKLPTVADELLIK 141 Query: 140 NVLLHTSHETK-----WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 +L + E WI R+ A+ L+Y GLR+SE L ++ D +R+ GKG Sbjct: 142 QLLDQKTPEDTAKAYLWI--RDKAMFELMYSSGLRLSELAGLNMGDVNFDTGIVRVLGKG 199 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQL 250 +K R VP+ +KA++ D P NL N + G L+ Q ++ Sbjct: 200 NKTRQVPV---GKKAMIALQDYLPHR-NLWQKKNCKALFISERHGTRLSTRAIQLRLKVC 255 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ L+ H LRH FA+H+LS+ GDLR+IQ +LGH +STTQIYT+V+ + Sbjct: 256 ATMAGIELNMYPHLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHVDFGA----L 311 Query: 311 MEIYDQTHP 319 ++YD HP Sbjct: 312 TKVYDHAHP 320 >gi|319761793|ref|YP_004125730.1| tyrosine recombinase xerd [Alicycliphilus denitrificans BC] gi|317116354|gb|ADU98842.1| tyrosine recombinase XerD [Alicycliphilus denitrificans BC] Length = 299 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 89/312 (28%), Positives = 149/312 (47%), Gaps = 21/312 (6%) Query: 14 LLKERQN----WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69 +L E QN +L L +E GLS+ TL +Y D + +LA T Sbjct: 1 MLPESQNAIDSFLDALWLEDGLSRNTLAAYRRDLSLYAGWLAAQQPPLALDATAEH---- 56 Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRA 128 + + + R Q S R L+ ++ + + L++R+I + + + ++ +P+ Sbjct: 57 HLSGYFAARHAQTRAT-SANRRLTVLRRYFHWALRERRIAQDPTV-RLLAARQPLRVPKT 114 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 L + Q LLH + R+ +L L+Y GLR+SE ++L + + L Sbjct: 115 LTQAQV-----EALLHAPDTATALGLRDRTMLELMYASGLRVSELVTLKTFQLGLTEGVL 169 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYI 247 RI GKG K R+VP R+ + Y + Q LF RG ++ +F + Sbjct: 170 RITGKGGKERLVPFGEEARRWLERYLAEGRGAILAGRQTDDLFVTQRGSAMSRVMFWVIV 229 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 ++ + G+ + HTLRH+FATHLL++G DLR +Q +LGH +STT IYT+V + Sbjct: 230 KKCAQLAGITAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARER-- 287 Query: 308 DWMMEIYDQTHP 319 + +++ Q HP Sbjct: 288 --LKQLHAQHHP 297 >gi|145224084|ref|YP_001134762.1| site-specific tyrosine recombinase XerD [Mycobacterium gilvum PYR-GCK] gi|145216570|gb|ABP45974.1| tyrosine recombinase XerD [Mycobacterium gilvum PYR-GCK] Length = 314 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 86/313 (27%), Positives = 149/313 (47%), Gaps = 25/313 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +L +L IERG++ TL SY D R++ L + + + ++ T++ F+ Sbjct: 12 QGYLDHLAIERGVAANTLSSYRRDLRRYAEHL-----KARGVGDLAAVTETDVSEFLVAL 66 Query: 79 RTQKIGDR----------SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 R +GD S R+L ++ ++ I +++ S LP++ Sbjct: 67 R---LGDPDGGVVPLSAVSAARALIAVRGLHRFAAAEGIAAIDVARDVKPPTPSRRLPKS 123 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 L+ + L L++ + ++ + RN A+L LLY G RISEA+ L ++ ++ Sbjct: 124 LSIDEVLALLEAAGGDSEADSP-LTLRNRALLELLYSTGARISEAVGLDIDDVDTSARSV 182 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRY 246 ++GKG K R++P+ A+ Y DL + +F RG L+ + Sbjct: 183 LLRGKGGKQRLIPIGRPAVTALETYLVRGRPDLARRGRGTPAIFLNARGGRLSRQSAWQV 242 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 ++ G+ + + H LRHSFATHLL G D+R +Q +LGH ++TTQIYT V Sbjct: 243 LQDAAGRAGVTATVSPHVLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMVTV--- 299 Query: 307 GDWMMEIYDQTHP 319 + + E++ HP Sbjct: 300 -NALREVWAGAHP 311 >gi|326570632|gb|EGE20668.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis BC7] gi|326574796|gb|EGE24730.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis O35E] Length = 330 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 97/309 (31%), Positives = 146/309 (47%), Gaps = 26/309 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +W L ++ SK T+ +Y+ QF FL R+ T R F ++ Sbjct: 29 SWCDELRLQ-NYSKHTITTYQTALIQFFNFLESDNYLGGDPLACRRQDLT--RFFSTRLE 85 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 +KI S K SLS I+ F ++L K+ + +N K S PR L L+ Sbjct: 86 EEKIKPISAKLSLSAIRIFYQFLIKQGVIA----VNPTTGYKIKSAPRKLPTVADELLIK 141 Query: 140 NVLLHTSHETK-----WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 +L + E WI R+ A+ L+Y GLR+SE L ++ D +R+ GKG Sbjct: 142 QLLDQKTPEDTAKAYLWI--RDKAMFELMYSSGLRLSELAGLNMGDVNFDTGIVRVLGKG 199 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQL 250 +K R VP+ +KA++ D P NL N + G L+ Q ++ Sbjct: 200 NKTRQVPV---GKKAMIALQDYLPHR-NLWQKKNCKALFISERHGTRLSTRAIQLRLKVC 255 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ L+ H LRH FA+H+LS+ GDLR+IQ +LGH +STTQIYT+V+ + Sbjct: 256 ATMAGIELNMYPHLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHVDFGA----L 311 Query: 311 MEIYDQTHP 319 ++YD HP Sbjct: 312 TKVYDHAHP 320 >gi|269213747|ref|ZP_05982773.2| tyrosine recombinase XerC [Neisseria cinerea ATCC 14685] gi|269145670|gb|EEZ72088.1| tyrosine recombinase XerC [Neisseria cinerea ATCC 14685] Length = 329 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 125/244 (51%), Gaps = 11/244 (4%) Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 +G+R+L R LS + + +L KR + +++ K+ +P+AL ++ ++ +L Sbjct: 97 LGERTLARKLSSWRQYCVWLVKRGLMHADPTADIKPPKQPERIPKALPQE----CLNQML 152 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202 + + R+ A+ L+YG GLR+SE L ++ D+ +R+ GKG K R VPL Sbjct: 153 DLPVDDGDALALRDHALFELMYGSGLRLSEIHGLDTGDVWLDEGWVRVTGKGRKQRQVPL 212 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 +A+ Y P + LF G G L+ Q+ + G + Sbjct: 213 TGKSVEALKNYL---PLRQTASDGKALFTGRNGTRLSQRQIQKRLESWAAQNGDGRHISP 269 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322 H +RHS+A+HLL + D+R++Q +LGH LSTTQIYT ++ D + +YD+ HP Sbjct: 270 HMMRHSYASHLLQSSRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAHPRAK 325 Query: 323 QKDK 326 +++K Sbjct: 326 RQEK 329 >gi|163747117|ref|ZP_02154473.1| tyrosine recombinase XerD [Oceanibulbus indolifex HEL-45] gi|161379678|gb|EDQ04091.1| tyrosine recombinase XerD [Oceanibulbus indolifex HEL-45] Length = 327 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 87/284 (30%), Positives = 137/284 (48%), Gaps = 18/284 (6%) Query: 38 SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97 +Y D + F FLA + +T S E+ ++ Q + + R LS IK Sbjct: 32 AYGRDLKDFDAFLARQNHDFLTA------SRGEVEDYLVYCDAQGLAKSTRARRLSAIKQ 85 Query: 98 FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157 ++ + + ++ + + + LP+ L+E++ L+D S RN+ Sbjct: 86 LYRFAFEEGLREDNPAVQIAGPGQDRRLPKILSEEEVDRLLDAA--RNSGRALADQLRNT 143 Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY--- 214 ++ LLY G+R+SE +SL D L I GKG + R+VPL R A+ + Sbjct: 144 CLMELLYATGMRVSELVSLPVSAARGDPRLLLISGKGGRERLVPLSEPARDALAAWLVVR 203 Query: 215 DLCPFDLNLNIQLP---LF--RGIRGKPLNPGVFQRYIRQLRRYLGLPLS-TTAHTLRHS 268 D + P LF RG+ G L F I++ G+P T HTLRH+ Sbjct: 204 DKADEAAQAKGKPPARHLFPSRGVMGH-LTRHRFYLLIKEFAVTGGVPPEKVTPHTLRHA 262 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 FATHLL+NG DLR+IQ++LGH ++TT+IYT+V + D ++E Sbjct: 263 FATHLLANGADLRAIQTMLGHADVATTEIYTHVLEERLSDLVLE 306 >gi|51594547|ref|YP_068738.1| site-specific tyrosine recombinase XerC [Yersinia pseudotuberculosis IP 32953] gi|186893547|ref|YP_001870659.1| site-specific tyrosine recombinase XerC [Yersinia pseudotuberculosis PB1/+] gi|51587829|emb|CAH19432.1| putative integrase/recombinase [Yersinia pseudotuberculosis IP 32953] gi|186696573|gb|ACC87202.1| tyrosine recombinase XerC [Yersinia pseudotuberculosis PB1/+] Length = 303 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 85/309 (27%), Positives = 151/309 (48%), Gaps = 17/309 (5%) Query: 11 SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70 S L + + +L+ L IER LS LT+ SY RQ + E++ + + L + Sbjct: 5 SASLAPQVEAFLRYLSIERQLSPLTVTSYR---RQLSALMEI--GEQMGLAHWQTLDAAQ 59 Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 +R+ +S+ + + SL LS ++SFL +L + + + + + LP+ ++ Sbjct: 60 VRSLVSRSKRTGLHASSLALRLSALRSFLNWLVSQGVLPANPAKGVSTPRSGRHLPKNID 119 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 + L+ L + R+ A+L ++YG GLR+SE + + +++ + + Sbjct: 120 VDEINKLLSIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGMNCKHVDLASGDVWV 173 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 GKG K R VPL + + + L +L +F GK ++ Q+ + Sbjct: 174 MGKGSKERKVPLGKTAVTWLQHWLALR--ELFEPQDDAIFLANTGKRISARNVQKRFAEW 231 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ H LRHSFATH+L + GDLR++Q +LGH L+TTQIYT+++ ++ + Sbjct: 232 GVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----L 287 Query: 311 MEIYDQTHP 319 +YD HP Sbjct: 288 ATVYDAAHP 296 >gi|255020750|ref|ZP_05292809.1| Site-specific recombinase XerD [Acidithiobacillus caldus ATCC 51756] gi|254969812|gb|EET27315.1| Site-specific recombinase XerD [Acidithiobacillus caldus ATCC 51756] Length = 308 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 83/300 (27%), Positives = 150/300 (50%), Gaps = 16/300 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +L +E L+ +L++Y D R +LA + + +R ++ F+++R Sbjct: 22 FLDHLWLEGNLAANSLEAYSRDLRLLATYLA------ASQRRLRDADAADLSLFLAQRLQ 75 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 RS+ R LS ++ F + ++ + ++++L LP +E + VD Sbjct: 76 GGAALRSVARQLSSLRRFYAFAQREGWRGDDPSASLQHLHIGRHLPAVPSEGE----VDA 131 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 +L T + R++A+L LY GLR+SE + L + + + GKG K R++ Sbjct: 132 LLAAPDRRTV-LGLRDAAMLETLYATGLRVSELVGLLCSQLDLEAGVVLTLGKGSKERLI 190 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ + + Y L + Q P LF +RG+ ++ F + I+ G+ + Sbjct: 191 PVGEVALETLHRYLREARGALLGHKQSPALFLTVRGEAMSRQRFWQTIKAHATKAGIRSA 250 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H+LRH+FATHLL +G DLRS+Q +LGH +L+TT+IYT++ + ++ Q HP Sbjct: 251 FSPHSLRHAFATHLLDHGADLRSVQLMLGHAQLNTTEIYTHIAQAR----LQNLHRQHHP 306 >gi|254203866|ref|ZP_04910226.1| tyrosine recombinase XerD [Burkholderia mallei FMH] gi|147745378|gb|EDK52458.1| tyrosine recombinase XerD [Burkholderia mallei FMH] Length = 333 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 86/277 (31%), Positives = 137/277 (49%), Gaps = 15/277 (5%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 +E GLS+ TL +Y D + F +LA ++ + + TE +I+ R K Sbjct: 54 LEHGLSRNTLDAYRRDLQLFAQWLA--ARHAASVDHASEPTLTE---YIAARSDGKA--T 106 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R LS + + + + L + + K++ P L+E Q V+ +L Sbjct: 107 SSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQ----VEALLAAPD 162 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 +T + R+ +L L+Y GLR+SE ++L + ++ +R+ GKG K R+VP V Sbjct: 163 VDTP-LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPF-GEV 220 Query: 207 RKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 +E Y D P L LF RG + F I++ + + + + HT Sbjct: 221 AHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHT 280 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 LRH+FATHLL++G DLR +Q +LGH +STTQIYT+V Sbjct: 281 LRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 317 >gi|294142606|ref|YP_003558584.1| integrase/recombinase XerC [Shewanella violacea DSS12] gi|293329075|dbj|BAJ03806.1| integrase/recombinase XerC [Shewanella violacea DSS12] Length = 308 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 90/316 (28%), Positives = 151/316 (47%), Gaps = 25/316 (7%) Query: 20 NWLQNLEI----ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 NW + E ER LS T+++Y + + L I+ I S+ +I+ + Sbjct: 4 NWFKQFESHLSSERQLSAHTVRNYLYELHRVTDKLDASASFPISWSEI---SHEQIQHVL 60 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 + Q + RSL +LS +K F +L + + N+ K++ LP+ ++ L Sbjct: 61 GQLHRQGLSPRSLSLTLSAVKQFCDFLLGEGVINANPAKNLSAPKQNKPLPKNMD----L 116 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 V ++L + + + R+ AI+ L Y GLR++E +L +I +++ GKG Sbjct: 117 DSVTHLLEIDADDP--LSVRDKAIMELFYSSGLRLAELAALDVLDIRFADRQVKVLGKGS 174 Query: 196 KIRIVPLLPSVRKAI---LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 K RIVP+ AI L + + P LF +G L Q + + + Sbjct: 175 KERIVPVGRCAIDAIQAWLTFREAIPCQ-----DEALFVTAKGNRLAHRSIQARLAKWGQ 229 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 L + H LRHSFATH+L + DLR++Q +LGH LSTTQIYT+++ ++ + + Sbjct: 230 EQALNMRVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQIYTSLDFQH----LAK 285 Query: 313 IYDQTHPSITQKDKKN 328 +YD HP ++ K N Sbjct: 286 VYDGAHPRASRSKKLN 301 >gi|15608839|ref|NP_216217.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis H37Rv] gi|15841158|ref|NP_336195.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis CDC1551] gi|31792887|ref|NP_855380.1| site-specific tyrosine recombinase XerD [Mycobacterium bovis AF2122/97] gi|121637608|ref|YP_977831.1| site-specific tyrosine recombinase XerD [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148661498|ref|YP_001283021.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis H37Ra] gi|148822907|ref|YP_001287661.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis F11] gi|167969182|ref|ZP_02551459.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis H37Ra] gi|215403996|ref|ZP_03416177.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis 02_1987] gi|215411348|ref|ZP_03420156.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis 94_M4241A] gi|215427023|ref|ZP_03424942.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis T92] gi|215430593|ref|ZP_03428512.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis EAS054] gi|215445888|ref|ZP_03432640.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis T85] gi|218753409|ref|ZP_03532205.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis GM 1503] gi|219557623|ref|ZP_03536699.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis T17] gi|224990083|ref|YP_002644770.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str. Tokyo 172] gi|253799261|ref|YP_003032262.1| integrase [Mycobacterium tuberculosis KZN 1435] gi|254231896|ref|ZP_04925223.1| hypothetical protein TBCG_01654 [Mycobacterium tuberculosis C] gi|254364540|ref|ZP_04980586.1| hypothetical integrase/recombinase [Mycobacterium tuberculosis str. Haarlem] gi|254550710|ref|ZP_05141157.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260200764|ref|ZP_05768255.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis T46] gi|260204970|ref|ZP_05772461.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis K85] gi|289443158|ref|ZP_06432902.1| tyrosine recombinase XerD [Mycobacterium tuberculosis T46] gi|289554527|ref|ZP_06443737.1| integrase [Mycobacterium tuberculosis KZN 605] gi|289569749|ref|ZP_06449976.1| integrase [Mycobacterium tuberculosis T17] gi|289574368|ref|ZP_06454595.1| integrase [Mycobacterium tuberculosis K85] gi|289745862|ref|ZP_06505240.1| tyrosine recombinase xerD [Mycobacterium tuberculosis 02_1987] gi|289750256|ref|ZP_06509634.1| integrase [Mycobacterium tuberculosis T92] gi|289753791|ref|ZP_06513169.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis EAS054] gi|289757810|ref|ZP_06517188.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis T85] gi|289761856|ref|ZP_06521234.1| tyrosine recombinase xerD [Mycobacterium tuberculosis GM 1503] gi|294993190|ref|ZP_06798881.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis 210] gi|297634253|ref|ZP_06952033.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis KZN 4207] gi|297731240|ref|ZP_06960358.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis KZN R506] gi|298525199|ref|ZP_07012608.1| integrase/recombinase XerD [Mycobacterium tuberculosis 94_M4241A] gi|306775886|ref|ZP_07414223.1| integrase [Mycobacterium tuberculosis SUMu001] gi|306779704|ref|ZP_07418041.1| integrase [Mycobacterium tuberculosis SUMu002] gi|306784437|ref|ZP_07422759.1| integrase [Mycobacterium tuberculosis SUMu003] gi|306788804|ref|ZP_07427126.1| integrase [Mycobacterium tuberculosis SUMu004] gi|306793139|ref|ZP_07431441.1| integrase [Mycobacterium tuberculosis SUMu005] gi|306797519|ref|ZP_07435821.1| integrase [Mycobacterium tuberculosis SUMu006] gi|306803400|ref|ZP_07440068.1| integrase [Mycobacterium tuberculosis SUMu008] gi|306807982|ref|ZP_07444650.1| integrase [Mycobacterium tuberculosis SUMu007] gi|306967799|ref|ZP_07480460.1| integrase [Mycobacterium tuberculosis SUMu009] gi|306971995|ref|ZP_07484656.1| integrase [Mycobacterium tuberculosis SUMu010] gi|307079707|ref|ZP_07488877.1| integrase [Mycobacterium tuberculosis SUMu011] gi|307084286|ref|ZP_07493399.1| integrase [Mycobacterium tuberculosis SUMu012] gi|313658572|ref|ZP_07815452.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis KZN V2475] gi|54039885|sp|P67637|XERD_MYCBO RecName: Full=Tyrosine recombinase xerD gi|54042782|sp|P67636|XERD_MYCTU RecName: Full=Tyrosine recombinase xerD gi|2326744|emb|CAB10958.1| PROBABLE INTEGRASE/RECOMBINASE [Mycobacterium tuberculosis H37Rv] gi|13881378|gb|AAK46009.1| integrase/recombinase XerD [Mycobacterium tuberculosis CDC1551] gi|31618477|emb|CAD96395.1| PROBABLE INTEGRASE/RECOMBINASE [Mycobacterium bovis AF2122/97] gi|121493255|emb|CAL71726.1| Probable integrase/recombinase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600955|gb|EAY59965.1| hypothetical protein TBCG_01654 [Mycobacterium tuberculosis C] gi|134150054|gb|EBA42099.1| hypothetical integrase/recombinase [Mycobacterium tuberculosis str. Haarlem] gi|148505650|gb|ABQ73459.1| tyrosine recombinase [Mycobacterium tuberculosis H37Ra] gi|148721434|gb|ABR06059.1| hypothetical integrase/recombinase [Mycobacterium tuberculosis F11] gi|224773196|dbj|BAH26002.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str. Tokyo 172] gi|253320764|gb|ACT25367.1| integrase [Mycobacterium tuberculosis KZN 1435] gi|289416077|gb|EFD13317.1| tyrosine recombinase XerD [Mycobacterium tuberculosis T46] gi|289439159|gb|EFD21652.1| integrase [Mycobacterium tuberculosis KZN 605] gi|289538799|gb|EFD43377.1| integrase [Mycobacterium tuberculosis K85] gi|289543503|gb|EFD47151.1| integrase [Mycobacterium tuberculosis T17] gi|289686390|gb|EFD53878.1| tyrosine recombinase xerD [Mycobacterium tuberculosis 02_1987] gi|289690843|gb|EFD58272.1| integrase [Mycobacterium tuberculosis T92] gi|289694378|gb|EFD61807.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis EAS054] gi|289709362|gb|EFD73378.1| tyrosine recombinase xerD [Mycobacterium tuberculosis GM 1503] gi|289713374|gb|EFD77386.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis T85] gi|298494993|gb|EFI30287.1| integrase/recombinase XerD [Mycobacterium tuberculosis 94_M4241A] gi|308215637|gb|EFO75036.1| integrase [Mycobacterium tuberculosis SUMu001] gi|308327355|gb|EFP16206.1| integrase [Mycobacterium tuberculosis SUMu002] gi|308330798|gb|EFP19649.1| integrase [Mycobacterium tuberculosis SUMu003] gi|308334621|gb|EFP23472.1| integrase [Mycobacterium tuberculosis SUMu004] gi|308338408|gb|EFP27259.1| integrase [Mycobacterium tuberculosis SUMu005] gi|308342131|gb|EFP30982.1| integrase [Mycobacterium tuberculosis SUMu006] gi|308345601|gb|EFP34452.1| integrase [Mycobacterium tuberculosis SUMu007] gi|308349918|gb|EFP38769.1| integrase [Mycobacterium tuberculosis SUMu008] gi|308354539|gb|EFP43390.1| integrase [Mycobacterium tuberculosis SUMu009] gi|308358516|gb|EFP47367.1| integrase [Mycobacterium tuberculosis SUMu010] gi|308362455|gb|EFP51306.1| integrase [Mycobacterium tuberculosis SUMu011] gi|308366075|gb|EFP54926.1| integrase [Mycobacterium tuberculosis SUMu012] gi|323719791|gb|EGB28905.1| integrase [Mycobacterium tuberculosis CDC1551A] gi|326903315|gb|EGE50248.1| integrase [Mycobacterium tuberculosis W-148] gi|328459013|gb|AEB04436.1| integrase [Mycobacterium tuberculosis KZN 4207] Length = 311 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 89/310 (28%), Positives = 145/310 (46%), Gaps = 19/310 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF-ISK 77 Q +L +L IERG++ TL SY D R++ L E+ I + ++ ++ F ++ Sbjct: 9 QGYLDHLTIERGVAANTLSSYRRDLRRYSKHL-----EERGITDLAKVGEHDVSEFLVAL 63 Query: 78 RR------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131 RR T + S R+L ++ ++ + +R S LP++L Sbjct: 64 RRGDPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKSLTI 123 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 + L+L++ + + RN A+L LLY G RISEA+ L +I ++ ++ Sbjct: 124 DEVLSLLEGAGGDKPSDGP-LTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVLLR 182 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQ 249 GKG K R+VP+ A+ Y DL + +F RG L+ + ++ Sbjct: 183 GKGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQD 242 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 G+ + H LRHSFATHLL G D+R +Q +LGH ++TTQIYT V Sbjct: 243 AAERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHA---- 298 Query: 310 MMEIYDQTHP 319 + E++ HP Sbjct: 299 LREVWAGAHP 308 >gi|315282101|ref|ZP_07870587.1| tyrosine recombinase XerC [Listeria marthii FSL S4-120] gi|313614253|gb|EFR87911.1| tyrosine recombinase XerC [Listeria marthii FSL S4-120] Length = 300 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 84/309 (27%), Positives = 145/309 (46%), Gaps = 21/309 (6%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 K Q +L L ER S T +YE D F FL + I +Q+++ ++R ++ Sbjct: 6 KLEQQFLDYLHSERNYSVNTSTAYENDLLDFRRFL-----NEQAIMAYQQVTFLDVRIYL 60 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 ++ + + ++ R +S ++SF +L + + TE+ + + K LP+ ++ Sbjct: 61 TELKQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEME 120 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L V + + + R+ +L +LYG G+R+SE + ++ + I+GKG+ Sbjct: 121 ALFQVVY----EDNETLTLRDRVLLEVLYGTGIRVSECAGILMPDLDTSYQAILIRGKGN 176 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPLNPGVFQRYIRQL 250 K R VP AI +Y P L + L G PL + + ++ Sbjct: 177 KERYVPFGVYAEDAITDY---LPSRTELMTRYKKSHDALLVNHYGDPLTTRGIRYCLTKI 233 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 L H LRH+FAT LL+NG D+R++Q +LGH LS+TQIYT+V ++ + Sbjct: 234 ISKASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH----L 289 Query: 311 MEIYDQTHP 319 Y + HP Sbjct: 290 KSTYMKHHP 298 >gi|172057895|ref|YP_001814355.1| integrase family protein [Exiguobacterium sibiricum 255-15] gi|171990416|gb|ACB61338.1| integrase family protein [Exiguobacterium sibiricum 255-15] Length = 292 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 89/314 (28%), Positives = 153/314 (48%), Gaps = 32/314 (10%) Query: 10 VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69 + F++L R+++L+ + IER LS T +SY+ RQ+ F + I + T R+ Sbjct: 5 LEFDVL--RKSFLRYVHIERQLSPNTGRSYDQTLRQYAAFCLDHQLGSIELATARR---- 58 Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSL 125 ++ QK ++ + +S +K F ++ +T ++N +N ++ K+ +L Sbjct: 59 ----YLFALYDQKASKSTIAQKVSCLKQFGRF-----VTRDTNDVNPFEGLKAPKRVQTL 109 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 P L + L + + RN A++ LLY G+R+SE L +++ D Sbjct: 110 PTFLVPSEY-----ERFLEVFRTSDALGVRNVALIELLYATGMRVSELAGLNVKDLDSDL 164 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245 + + GKG K RI P+ RKA+ +Y L + + +F G+ L ++ Sbjct: 165 EYVHVYGKGRKERITPIGSFARKALTDY--LAERQPTEDEEQAVFLSRSGRRLTTDGIRK 222 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 +++ +L T H LRHSFAT LL G DLR++Q +LGH LSTT YT+V ++ Sbjct: 223 ILKKADPFLSK--HVTPHALRHSFATDLLERGADLRAVQELLGHASLSTTGQYTHVTTER 280 Query: 306 GGDWMMEIYDQTHP 319 + +Y Q HP Sbjct: 281 ----LRHVYQQAHP 290 >gi|239827068|ref|YP_002949692.1| integrase [Geobacillus sp. WCH70] gi|239807361|gb|ACS24426.1| integrase family protein [Geobacillus sp. WCH70] Length = 301 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 87/283 (30%), Positives = 143/283 (50%), Gaps = 14/283 (4%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-I 83 L+IE+ S T+ Y D R F FL + ++Q + ++ T +R FI + T++ + Sbjct: 14 LQIEKNYSLNTVDGYAYDLRCFENFLV---QHGYSVQ-LNNITKTHVRRFIQHQITKENV 69 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 R++ R +S +KSF KY K + ++ + K + LP + +L+ + + Sbjct: 70 KPRTIYRRISCLKSFSKYCVKENLIDNDFMIGIDTPKTDSKLPTYM----SLSELRKLFH 125 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 + + RN + LL G+R SE + LT + I +T+RI GKG K R++PL Sbjct: 126 FLEQDNSRMAMRNHLLFKLLATTGMRRSEIVELTWEQIDLSNNTIRIYGKGKKERLLPLH 185 Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TA 262 P V + Y + + L+ P+F GK LNP + + + + GLP + Sbjct: 186 PMVVPLMKSYMESLE-EYQLHPSQPVFLNKNGKKLNPRGLHKIFKDILQKAGLPPQRFSL 244 Query: 263 HTLRHSFATHLLSNGG---DLRSIQSILGHFRLSTTQIYTNVN 302 H LRH+FAT L+ DLR++Q +LGH L TTQ+YT+V+ Sbjct: 245 HHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVD 287 >gi|220904455|ref|YP_002479767.1| tyrosine recombinase XerD [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868754|gb|ACL49089.1| tyrosine recombinase XerD [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 310 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 92/303 (30%), Positives = 144/303 (47%), Gaps = 21/303 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-EKITIQTIRQLSYTEIRAFISKRR 79 W L +RGLS T+ SY D F +F + E ++ Q Q EI +++ R Sbjct: 21 WQDYLLAQRGLSPQTVASYGQDLENFFLFRQELAQGEAVSPQPDEQ----EIFLYLAWLR 76 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 ++ R+L R LS +++F + + + + N K LP L+ + +L+ Sbjct: 77 ARQNTGRTLARRLSALRAFFDFAVQENAIKNNPAQLLDNPKLPQHLPEVLSRDEMESLLA 136 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 L R+ IL LLY GLR+SE L ++ + +R+ GKG K R+ Sbjct: 137 RPDLRDRG-----GQRDRCILELLYAAGLRVSELCDLCLPDLDLQRGLVRVFGKGAKERL 191 Query: 200 VPLLPSVRKAILEYY--DLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 VPL + + +LE Y D P F N LF G+ L + +++ G+ Sbjct: 192 VPLH-DLMQNMLENYIRDWRPAFSPTGN---QLFVNRSGRALTRQYIWKMVKKYALEAGI 247 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + HT RHSFATHLL G DLR++Q +LGH +S T+IYT+V ++ + I+ + Sbjct: 248 RRPVSPHTFRHSFATHLLEGGADLRAVQLLLGHADISATEIYTHVQAER----LRSIHRK 303 Query: 317 THP 319 HP Sbjct: 304 FHP 306 >gi|260186653|ref|ZP_05764127.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis CPHL_A] gi|289447315|ref|ZP_06437059.1| integrase [Mycobacterium tuberculosis CPHL_A] gi|289420273|gb|EFD17474.1| integrase [Mycobacterium tuberculosis CPHL_A] Length = 311 Score = 112 bits (281), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 88/310 (28%), Positives = 143/310 (46%), Gaps = 19/310 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +L +L IERG++ TL SY D R++ L E+ I + ++ ++ F+ Sbjct: 9 QGYLDHLTIERGVAANTLSSYRRDLRRYSKHL-----EERGITDLAKVGEHDVSEFLVAL 63 Query: 79 R-------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131 R T + S R+L ++ ++ + +R S LP++L Sbjct: 64 RRGDPDSGTAALSAVSAARALIAVRGLHRFAAAEGLVELDVARAVRPPTPSRRLPKSLTI 123 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 + L+L++ + + RN A+L LLY G RISEA+ L +I ++ ++ Sbjct: 124 DEVLSLLEGAGGDKPSDGP-LTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVLLR 182 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQ 249 GKG K R+VP+ A+ Y DL + +F RG L+ + ++ Sbjct: 183 GKGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQD 242 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 G+ + H LRHSFATHLL G D+R +Q +LGH ++TTQIYT V Sbjct: 243 AAERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHA---- 298 Query: 310 MMEIYDQTHP 319 + E++ HP Sbjct: 299 LREVWAGAHP 308 >gi|313204183|ref|YP_004042840.1| integrase family protein [Paludibacter propionicigenes WB4] gi|312443499|gb|ADQ79855.1| integrase family protein [Paludibacter propionicigenes WB4] Length = 293 Score = 112 bits (281), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 85/299 (28%), Positives = 143/299 (47%), Gaps = 13/299 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +LQ L+ E+ S T+ SY D QF FL +E ++ +I+ +I + Sbjct: 5 FLQYLQYEKNYSSHTVLSYNTDLIQFCNFLNVTPDE----FDPNSVNSQQIQQWILSLMS 60 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + R+L R +S +KSF +L R+++ + L + K +P E + +DN Sbjct: 61 VDLSARTLSRKISTLKSFWHFLLSRRLSKHNPTLKIILPKTKKPIPAFFKENEMTAALDN 120 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + S E RN IL Y G+R+SE L++ ++I T+R+ GK +K RI+ Sbjct: 121 SMKPDSFEY----TRNRLILETFYLTGIRLSELLNIQDKDIDHSAGTIRVIGKRNKERII 176 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 P+ S+ I Y L +++ + LF GK + P + + + + Sbjct: 177 PIDKSLINDIERYITLRNESIDI-FEPNLFVRNNGKKMYPKMLYNIVHENMSEVSSLHKR 235 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H LRH+FAT LL+ G D+ +++ +LGH LS TQ+YT+ + + IY HP Sbjct: 236 SPHVLRHTFATSLLNGGADINAVKELLGHSSLSATQVYTHT----SFEELYNIYKHAHP 290 >gi|332678799|gb|AEE87928.1| Tyrosine recombinase xerC [Francisella cf. novicida Fx1] Length = 292 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 92/322 (28%), Positives = 161/322 (50%), Gaps = 45/322 (13%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 L+ N+L NL + S+ T+ +Y+ D Q + ++ + I L++++I + Sbjct: 4 LEHINNFLDNLIYLKNYSQETINNYQRDLLQL--------NKVLSDKNIISLTHSDILIW 55 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 I K Q ++L+R LS ++SF +L +I +++ ++ K S LP+ +N + Sbjct: 56 IKKLHAQGNSPKTLQRKLSSVRSFFNFLINSEIVSQNPANGIKAPKDSKRLPKVVNTDEL 115 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 L+D ++ S++ I+AR+ A LLY CG+R+SE S+ ++I Q +R+ GKG Sbjct: 116 AYLLD---VNPSND---IEARDIACFDLLYSCGIRLSELSSVELKDISISQKNIRVTGKG 169 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----------LFRGIRGKPLNPGVF 243 +K RIV Y+ NLN L LF GK L Sbjct: 170 NKQRIV------------YFGTKTLS-NLNRWLKIRDSLKPSSDYLFISRDGKHLTNRSI 216 Query: 244 QRYIRQL-RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 Q+ + ++Y + H LRHSFA+H+L + DL +++ +LGH +S+TQIYT++N Sbjct: 217 QKRLEIFAQKYASRHIH--PHMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLN 274 Query: 303 SKNGGDWMMEIYDQTHPSITQK 324 + + ++D+ HP +K Sbjct: 275 FQQ----LASVFDKAHPRAKKK 292 >gi|161523917|ref|YP_001578929.1| site-specific tyrosine recombinase XerD [Burkholderia multivorans ATCC 17616] gi|189351322|ref|YP_001946950.1| site-specific tyrosine recombinase XerD [Burkholderia multivorans ATCC 17616] gi|160341346|gb|ABX14432.1| tyrosine recombinase XerD [Burkholderia multivorans ATCC 17616] gi|189335344|dbj|BAG44414.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616] Length = 316 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 141/297 (47%), Gaps = 19/297 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E GL++ TL +Y D F +LA + + T + +I+ R K Sbjct: 35 LWLEHGLARNTLDAYRRDLTLFSQWLAATHDAALDAA-----DETMLTGYIAARSDGKA- 88 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S R LS + + + + + L + + K++ P L+E Q L+ + Sbjct: 89 -TSSNRRLSVFRRYYGWAVREHRASADPTLRIASAKQAARFPSTLSEAQVEALLGAPDIA 147 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 T + R+ +L L+Y GLR+SE ++L + ++ +R+ GKG K R+VP Sbjct: 148 TP-----LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPF-G 201 Query: 205 SVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 V +E Y + P L LF RG + F I++ ++ + + Sbjct: 202 EVAHGWIERYLREARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQHADVRAHLSP 261 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V + + ++ Q HP Sbjct: 262 HTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARER----LRTLHAQHHP 314 >gi|138895282|ref|YP_001125735.1| integrase/recombinase [Geobacillus thermodenitrificans NG80-2] gi|134266795|gb|ABO66990.1| Integrase/recombinase [Geobacillus thermodenitrificans NG80-2] Length = 301 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 87/283 (30%), Positives = 143/283 (50%), Gaps = 14/283 (4%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-I 83 L+IE+ S T+ Y D R F FL + ++Q + ++ T +R FI + T++ + Sbjct: 14 LQIEKNYSLNTVDGYAYDLRCFENFLV---QHGYSVQ-LNSITKTHVRRFIQHQITKENV 69 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 R++ R +S +KSF KY K + ++ + K + LP + +L+ + + Sbjct: 70 KPRTIYRRISCLKSFSKYCVKENLIDNDFMIGIDTPKTDSKLPTYM----SLSELRKLFH 125 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 + + RN + LL G+R SE + LT + I +T+RI GKG K R++PL Sbjct: 126 FLEQDNSRMAMRNHLLFKLLATTGMRRSEIVELTWEQIDLSNNTIRIYGKGKKERLLPLH 185 Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TA 262 P V + Y + + L+ P+F GK LNP + + + + GLP + Sbjct: 186 PMVVPLMKSYMESLE-EYQLHPSQPVFLNKNGKKLNPRGLHKIFKDILQKAGLPPQRFSL 244 Query: 263 HTLRHSFATHLLSNGG---DLRSIQSILGHFRLSTTQIYTNVN 302 H LRH+FAT L+ DLR++Q +LGH L TTQ+YT+V+ Sbjct: 245 HHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVD 287 >gi|312884205|ref|ZP_07743916.1| site-specific tyrosine recombinase XerC [Vibrio caribbenthicus ATCC BAA-2122] gi|309368133|gb|EFP95674.1| site-specific tyrosine recombinase XerC [Vibrio caribbenthicus ATCC BAA-2122] Length = 310 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 88/311 (28%), Positives = 156/311 (50%), Gaps = 20/311 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 N+ + L E+GLS T ++Y +Q L +AF + + I+ + +R SK Sbjct: 18 NFYEYLRAEKGLSLHTQRNY----KQQLETMAFQLVQ-LGIEDWSSVDAAWVRQLASKGM 72 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + SL LS +++F +L R + + +K LP+ L+ + Sbjct: 73 RDGMKASSLATRLSSLRAFFDFLILRGEIAANPAKGVSAPRKKRPLPKNLDVDEV----- 127 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 N LL + + R+ AI+ L+YG GLR++E +++ ++I + LR+ GKG+K R Sbjct: 128 NQLLEVDEDDP-LAVRDRAIMELMYGAGLRLAELVNVDLKDIRTSRGELRVVGKGEKERK 186 Query: 200 VPLLPSVRKAIL--EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 VP +A++ E + L+ + LF G ++ Q+ + + + + Sbjct: 187 VPF---AGQAVIWVEKWLRVRGQLSDPNESALFVSKLGGRISHRSVQKRMAEWGQKQAVS 243 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ ++ + E+YDQ Sbjct: 244 SHISPHKLRHSFATHMLESSQNLRAVQELLGHENISTTQIYTHLDFQH----LAEVYDQA 299 Query: 318 HPSITQKDKKN 328 HP +K +K Sbjct: 300 HPRARKKGRKE 310 >gi|238651031|ref|YP_002916888.1| site-specific tyrosine recombinase XerD [Rickettsia peacockii str. Rustic] gi|238625129|gb|ACR47835.1| site-specific tyrosine recombinase XerD [Rickettsia peacockii str. Rustic] Length = 306 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 94/311 (30%), Positives = 151/311 (48%), Gaps = 50/311 (16%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ L ER LSK ++ SY+ D F +LA + ++ I T IR +I + Sbjct: 7 FLEMLLAERALSKNSILSYKRDLFDFQNYLAKHKLSELNITT------ENIRDWIEYLAS 60 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS+ R +S IKS+ ++L T + +LN+ K N LP L+ Q + + Sbjct: 61 DDLQARSINRKISTIKSYYEFLISENHTAFNPVLNVDLPKYQNKLPEILSIAQ----IKS 116 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-------LRIQGK 193 +L H S + R +A+++LLY GLR+SE +SL +I+ ++++ + GK Sbjct: 117 LLEHCSQDNSPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNKTSTGEVRKIFSVLGK 176 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI---RGKPLN----------P 240 G+K R++ + +I +Y + RG+ + KP N Sbjct: 177 GNKERVIVINEQAVISIAKYLAI--------------RGVFVNKAKPRNLIYLFPSSALA 222 Query: 241 GVFQR-----YIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 G R ++ Y GL + H LRHSFA+HLL G DLR IQ +LGH +ST Sbjct: 223 GYMTRQNFAILLKSAALYAGLNHEYISPHILRHSFASHLLEGGADLRVIQELLGHADIST 282 Query: 295 TQIYTNVNSKN 305 TQIYT++ + + Sbjct: 283 TQIYTHLQTNH 293 >gi|298373089|ref|ZP_06983079.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058] gi|298275993|gb|EFI17544.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058] Length = 294 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 97/305 (31%), Positives = 156/305 (51%), Gaps = 20/305 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT-IRQLSYTEIRAFISK 77 + +L+ L+ E+ S T+ SY D QF A+Y+ +I T I + +IR +I++ Sbjct: 3 EEYLRYLQYEKNYSSRTVSSYRKDINQFT---AYYS--RINNSTDISKAEIDDIRLWIAE 57 Query: 78 R-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA-L 135 KI RS+ R LS +KSF K+L ++ I +S+ +++ K SLP EK L Sbjct: 58 LISVNKITSRSVCRKLSSMKSFYKFLLQKNII-DSSPVDVVAPKIIKSLPVFFTEKDINL 116 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 D +L S ET ARN+ ++ + Y G+R E + L +I ++ T+++ GK Sbjct: 117 LGTDEILPDDSFET----ARNALMIEIFYQTGIRRMELIELKISDIDFERKTIKVLGKRR 172 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQLRRYL 254 K R VP ++ I Y + + + LF G+ L + V+ R+L + Sbjct: 173 KERFVPFGEALENQIKHYLSIRQKRITTDNDY-LFVTKHGRQLYDKAVYNIVTRELGS-I 230 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 + HTLRH+FAT +L NG DL SI+ +LGH L+ TQ+YT+ + K + ++Y Sbjct: 231 TTKTKHSPHTLRHTFATTMLDNGADLNSIKELLGHSSLAATQVYTHTSFKE----LQKLY 286 Query: 315 DQTHP 319 THP Sbjct: 287 QNTHP 291 >gi|152993773|ref|YP_001359494.1| phage integrase family site specific recombinase [Sulfurovum sp. NBC37-1] gi|151425634|dbj|BAF73137.1| site-specific recombinase, phage integrase family [Sulfurovum sp. NBC37-1] Length = 280 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 95/308 (30%), Positives = 155/308 (50%), Gaps = 38/308 (12%) Query: 13 ELLKER-QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71 E LKE + +L L RG S++++ +YE RQ FY E+ I++ L T Sbjct: 4 EKLKEYIETFLDYLLDVRGYSEVSVTTYEIALRQMSGVSHFYEEDGISV-----LDITPF 58 Query: 72 RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131 R I K +++ + LS ++SF+KYL+ + ++ ++K SLP+ + E Sbjct: 59 RFNIVKN-----SKKTIVKKLSAVRSFVKYLEDQ-CNIPVKLIADESIKVPQSLPKPIEE 112 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 + ++ VL + E K + + +LYG GLRISE L ++I + ++I Sbjct: 113 Q----YIEEVLAKANVEEKLL-------ISMLYGLGLRISELSGLKLEDIKGEW--IQIH 159 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 GKG+K+R +PL+ S++K I Y D N + +G P+N + + +L Sbjct: 160 GKGNKVRELPLMKSLQKLIGVY-----MDQNGPKRYLFEKG--NAPMNAAQLRYKLTKLF 212 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 + GL T H LRHSFATHLL++G + + +LGH ++TTQ+YT + S M Sbjct: 213 KKEGL--KVTPHQLRHSFATHLLNHGARIADVSELLGHETMATTQVYTKLGSVKK----M 266 Query: 312 EIYDQTHP 319 + Y HP Sbjct: 267 QEYMSAHP 274 >gi|309810355|ref|ZP_07704190.1| tyrosine recombinase XerD [Dermacoccus sp. Ellin185] gi|308435668|gb|EFP59465.1| tyrosine recombinase XerD [Dermacoccus sp. Ellin185] Length = 311 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 91/311 (29%), Positives = 140/311 (45%), Gaps = 11/311 (3%) Query: 11 SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70 S EL + WL +L +ERGLS TL +Y D ++L +LA + ++ + + Sbjct: 7 SLELTQVMTQWLHHLRVERGLSPHTLAAYRRDVTRYLGYLA-----ASGVTSLDGVEESR 61 Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 + AF+ R G L S + ++ E++ + LPR L Sbjct: 62 VEAFLRSLREGGQGHPPLAASSAARALVAVRRLHAFVSLETDAPDAATDVAPPRLPRKLP 121 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 + L V+ +L R+ A+L +LYG G R+SE + L ++ +LR+ Sbjct: 122 KAIPLADVERLLAAAGDGEDAGSLRDRALLEVLYGVGARVSEVVGLDVDDVDLMSRSLRL 181 Query: 191 QGKGDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 GKG K RIVPL A+ Y + +F RG L+ +R Sbjct: 182 FGKGSKERIVPLGRYAADALGSYLTRERPALAAKGKAGAAVFLNQRGGRLSRQSVFGLVR 241 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 + GL + HTLRHS+ATHLL G D+R +Q +LGH ++TTQIYT V+ + Sbjct: 242 RAAEVAGLDGEISPHTLRHSYATHLLEGGADVRVVQELLGHASVTTTQIYTMVSVQQ--- 298 Query: 309 WMMEIYDQTHP 319 + E + HP Sbjct: 299 -LRETFAAAHP 308 >gi|72161078|ref|YP_288735.1| site-specific tyrosine recombinase XerC [Thermobifida fusca YX] gi|71914810|gb|AAZ54712.1| tyrosine recombinase XerC subunit [Thermobifida fusca YX] Length = 303 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 85/298 (28%), Positives = 136/298 (45%), Gaps = 16/298 (5%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 ++L +ERG S T+++Y D R L +LA + L +R ++ Sbjct: 19 RHLRVERGCSPHTVRAYLTDVRSLLDYLA-----DTGAGGLEDLDLATLRGWLGTLHDAG 73 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 ++ R + + F YL + L + ++ LP L+E QA + Sbjct: 74 ASRATMARRTAAARVFTAYLHRSGRLATDPGLRLATPRRHRRLPAVLDEDQAARVCAAA- 132 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202 E + R SA++ +LY +R++E L ++ ++ TLR+ GKG + R+VP+ Sbjct: 133 --RDGEESPLVLRRSAVVEVLYSTAIRVAELCGLDLDDVDWERHTLRVLGKGGRERVVPI 190 Query: 203 -LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 +P++ D P + LF G RG L +R + + T Sbjct: 191 GVPALDAVDRWLRDGRPQWATAHSGRALFLGARGGRLGERTARRDVYAATAAVA---RTG 247 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHS ATHLL+ G DLRS+Q ILGH L++TQIYT+V+ + +Y Q HP Sbjct: 248 PHGLRHSAATHLLNGGADLRSVQEILGHASLASTQIYTHVSIGR----LASVYQQAHP 301 >gi|254368999|ref|ZP_04985012.1| integrase/recombinase XerC [Francisella tularensis subsp. holarctica FSC022] gi|157121920|gb|EDO66090.1| integrase/recombinase XerC [Francisella tularensis subsp. holarctica FSC022] Length = 292 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 89/315 (28%), Positives = 162/315 (51%), Gaps = 31/315 (9%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 L+ N+L NL + S+ T+ +Y+ D Q + ++ + I L++++I + Sbjct: 4 LEHINNFLDNLLYLKNYSQETINNYQRDLLQL--------NQALSDKNIISLTHSDILIW 55 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 I + Q ++L+R LS ++SF +L +I +++ ++ K S LP+ +N + Sbjct: 56 IKRLHAQGNSPKTLQRKLSSVRSFFNFLINSEIVSQNPANGIKAPKDSKRLPKVVNTDEL 115 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 L+D ++ S++ I+AR+ A LLY CG+R+SE S+ ++I Q +R+ GKG Sbjct: 116 AYLLD---INPSND---IEARDIACFDLLYSCGIRLSELSSVELKDISISQKNIRVTGKG 169 Query: 195 DKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 +K RIV L ++ + + L P LF GK L Q+ + Sbjct: 170 NKQRIVYFGTKTLSNLNRWLKIRDSLKPS------SDYLFISRDGKHLTNRSIQKRLEIF 223 Query: 251 -RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 ++Y + H LRHSFA+H+L + DL +++ +LGH +S+TQIYT++N + Sbjct: 224 AQKYASRHIH--PHMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQ---- 277 Query: 310 MMEIYDQTHPSITQK 324 + ++D+ HP +K Sbjct: 278 LASVFDKAHPRAKKK 292 >gi|15677703|ref|NP_274864.1| integrase/recombinase XerC [Neisseria meningitidis MC58] gi|34223071|sp|Q9JXV6|XERC_NEIMB RecName: Full=Tyrosine recombinase xerC gi|7227126|gb|AAF42202.1| integrase/recombinase XerC [Neisseria meningitidis MC58] gi|325139527|gb|EGC62067.1| tyrosine recombinase XerC [Neisseria meningitidis CU385] gi|325200925|gb|ADY96380.1| tyrosine recombinase XerC [Neisseria meningitidis H44/76] Length = 301 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 124/244 (50%), Gaps = 11/244 (4%) Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 +G+R+L R LS + + +L KR + +++ K+ +P+AL ++ ++D + Sbjct: 69 LGERTLARKLSSWRQYCVWLVKRGLMHADPTADIKPPKQPERVPKALPQEWLNRMLDLPV 128 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202 + R+ A+ L+YG GLR+SE L ++ D++ + + GKG K R VPL Sbjct: 129 ----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVIGKGRKQRQVPL 184 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 + +A+ Y P + LF G G L+ Q+ + Q G + Sbjct: 185 VGKSVEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 241 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322 H +RHS+A HLL D+R++Q +LGH LSTTQIYT ++ D + +YD+ HP Sbjct: 242 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAHPRAK 297 Query: 323 QKDK 326 ++D+ Sbjct: 298 RQDE 301 >gi|270264257|ref|ZP_06192524.1| site-specific tyrosine recombinase XerC [Serratia odorifera 4Rx13] gi|270041906|gb|EFA15003.1| site-specific tyrosine recombinase XerC [Serratia odorifera 4Rx13] Length = 303 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 90/312 (28%), Positives = 156/312 (50%), Gaps = 21/312 (6%) Query: 10 VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69 V+ L + +L+ L++ER LS LT SY +RQ +A E +T L Sbjct: 4 VAASLQQPVDAFLRYLKVERQLSPLTQLSY---SRQLQALMALAQEMGVT--EWPALDAA 58 Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 ++R ++ + + SL LS ++SFL + + + +R + LP+ + Sbjct: 59 KVRMLAARSKRAGLQSSSLALRLSALRSFLDWQVSQGALIANPAKGIRTPRSGRHLPKNI 118 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 + + L+ N+ L+ + R+ A+L ++YG GLR+SE + L +++ + Sbjct: 119 DVDEINQLL-NIDLNDP-----LAVRDRAMLEVMYGAGLRLSELVGLDCRHVDLAAGDIW 172 Query: 190 IQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 + GKG K R +P+ R A+ LE++ L DL +F +GK ++ Q+ Sbjct: 173 VLGKGSKERKLPI---GRTAVTWLEHW-LAMRDLFGPADDAMFLSNQGKRISTRNVQKRF 228 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 + G+ H LRHSFATH+L + GDLR++Q +LGH L+TTQIYT+++ ++ Sbjct: 229 AEWGVKQGVNSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH-- 286 Query: 308 DWMMEIYDQTHP 319 + +YD HP Sbjct: 287 --LANVYDAAHP 296 >gi|148978770|ref|ZP_01815150.1| site-specific tyrosine recombinase XerC [Vibrionales bacterium SWAT-3] gi|145962191|gb|EDK27475.1| site-specific tyrosine recombinase XerC [Vibrionales bacterium SWAT-3] Length = 310 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 80/302 (26%), Positives = 149/302 (49%), Gaps = 16/302 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L E+GLS T ++Y+ L + ++ RQ+ +R SK + Sbjct: 24 LRSEKGLSLHTQRNYKQQLETMAEHLV-----TLGLKDWRQVDAAWVRQLASKGMRDGMK 78 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S+ LS ++SF +L R T + + +K LP+ L+ + L+D Sbjct: 79 ASSIATRLSSLRSFFDFLVLRGEITANPAKGVSAPRKQRPLPKNLDVDEVGQLLD----- 133 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 +E + R+ A++ ++YG GLR++E + + ++++ Q +R+ GKGDK R P Sbjct: 134 -VNEDDPLSIRDRAMMEVMYGAGLRLAELVGINLKDVLSRQGEIRVIGKGDKERKAPF-S 191 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 + K ++ + +L + LF G ++ Q+ + + + + + H Sbjct: 192 GLAKEWVDKWLRVRGELASPGEDALFVSKLGTRISHRSVQKRMEEWGKKQSVASHISPHK 251 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 LRHSFATH+L + +LR++Q +LGH +STTQ+YT+++ ++ + + YDQ HP +K Sbjct: 252 LRHSFATHVLESSQNLRTVQELLGHENISTTQVYTHLDFQH----LAQAYDQAHPRARKK 307 Query: 325 DK 326 +K Sbjct: 308 NK 309 >gi|114327281|ref|YP_744438.1| integrase/recombinase xerD [Granulibacter bethesdensis CGDNIH1] gi|114315455|gb|ABI61515.1| integrase/recombinase xerD [Granulibacter bethesdensis CGDNIH1] Length = 290 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 89/310 (28%), Positives = 151/310 (48%), Gaps = 28/310 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L+ L ERG ++ TL +Y D R + + A + + + +R +++ + Sbjct: 6 ESFLEMLAAERGAARNTLLAYGTDLRDWSGYAARHRVDPL------HADEAALRGYLAAQ 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 G R+ R LS ++ F ++L ++ ++ + K SLP+ L+E + V Sbjct: 60 SGAGNGPRTQSRRLSALRQFYRFLLEQGTRSDDPTALLDAPKLPRSLPKYLDEAE----V 115 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D +L + + A L +LY GLR+SE L+L + D + ++GKG + R Sbjct: 116 DALL-----QAAPAEPAAHAALEILYSTGLRVSEVLALPARAFRGDAPMMTVRGKGGRER 170 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGL- 256 +VP+ + A+ LF G KP+ F ++++ GL Sbjct: 171 MVPVSAAAISAVAAMRS------GAEQSRWLFPGRDPAKPMTRQGFALMLKRVALQAGLD 224 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 P + H LRH FA+HLL+ G DLRS+Q +LGH ++TTQIYT+V S+ + + D Sbjct: 225 PARVSPHVLRHCFASHLLARGADLRSLQMLLGHVDIATTQIYTHVLSER----LRALLDT 280 Query: 317 THP-SITQKD 325 HP SIT +D Sbjct: 281 CHPLSITAED 290 >gi|85713796|ref|ZP_01044786.1| tyrosine recombinase XerD [Nitrobacter sp. Nb-311A] gi|85699700|gb|EAQ37567.1| tyrosine recombinase XerD [Nitrobacter sp. Nb-311A] Length = 340 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 95/304 (31%), Positives = 143/304 (47%), Gaps = 40/304 (13%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI--QTIRQ-LSYTEIRAFISK 77 +L L E+G + TL +Y D FLA + QT+R L+ ++R F S Sbjct: 36 FLDMLAAEQGAGENTLDAYRRDLEDLSAFLARARRSFVIADTQTLRDYLNDLDLRGFKSS 95 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 S+ R LS ++ ++L ++ ++ + K+ SLP+ L+ + Sbjct: 96 ---------SVARRLSAMRHLFRFLLSERVRSDDPAAILSGPKRGRSLPKILS----IAD 142 Query: 138 VDNVLLHTSHETKWID---------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 VD +L + + D AR +L +LY GLR+SE +SL D + Sbjct: 143 VDRLLARAKADAESPDISPARRLRAARLYCLLEVLYATGLRVSELVSLPLSAARRDARMI 202 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ----------LPLFRGIRGKPL 238 ++GKG K R+VPL + R+A+ Y L D P F G G L Sbjct: 203 VVRGKGGKERLVPLNDASRQAMANY--LVAIDDQRGAGKTAATRPKWLFPSF-GDSGH-L 258 Query: 239 NPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 F R +++L GL P + H LRH+FA+HLL NG DLR +Q++LGH +STTQI Sbjct: 259 TRQHFARELKELAAAAGLAPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQI 318 Query: 298 YTNV 301 YT+V Sbjct: 319 YTHV 322 >gi|241206577|ref|YP_002977673.1| site-specific tyrosine recombinase XerD [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860467|gb|ACS58134.1| tyrosine recombinase XerD [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 317 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 97/320 (30%), Positives = 156/320 (48%), Gaps = 23/320 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L+ + ERG + TLQSYE D FL TE I + + + ++ A++S Sbjct: 10 ESFLEMMSAERGAAANTLQSYERDLDDVRSFL---TERSIRLT---EAASADLAAYLSSL 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S R L+ ++ F K+L + T+ + KK LP+ + ++ L+ Sbjct: 64 AREGFKPSSQARRLAAMRQFYKFLYAEGLRTDDPTGILDAPKKGRPLPKTMGVEEVGRLL 123 Query: 139 DNVLLHTSHETKWIDARNSAILYLL--YGCGLRISEALSLTPQNIMDDQST-LRIQGKGD 195 R + L Y G+R+SE +SL P ++D + L I+GKG+ Sbjct: 124 SQAEAEAEDTAPGQLQRLRMLALLELLYATGMRVSELVSL-PARVLDQEGRFLMIRGKGN 182 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNI----QLP-LFRGIRGKPLNP-GVFQRYIRQ 249 K R+VPL S A+ Y L + N + + P LF + P VF R ++ Sbjct: 183 KERLVPLSHSAISALKSYGRLLAAE-NAAVKERQESPWLFPSASKEGYLPRQVFARDLKN 241 Query: 250 LRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 L GL P + H +RH+FA+HLL+NG DLR +Q +LGH +STTQIYT+V + Sbjct: 242 LAIRAGLTPSLISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER--- 298 Query: 309 WMMEIYDQTHPSITQKDKKN 328 ++ QTH + ++ KK+ Sbjct: 299 --LQQLVQTHHPLAKQAKKH 316 >gi|68536254|ref|YP_250959.1| integrase/recombinase [Corynebacterium jeikeium K411] gi|260578954|ref|ZP_05846857.1| tyrosine recombinase XerC [Corynebacterium jeikeium ATCC 43734] gi|68263853|emb|CAI37341.1| integrase/recombinase [Corynebacterium jeikeium K411] gi|258602928|gb|EEW16202.1| tyrosine recombinase XerC [Corynebacterium jeikeium ATCC 43734] Length = 301 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 122/234 (52%), Gaps = 10/234 (4%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 SL R S ++ F +L R + + ++ K +LPR L QA +++ + Sbjct: 75 SLSRLASSMRGFGAFLAHRGFVQANPVAALKAPKPQRTLPRVLRSDQASDMLNGLQPEGD 134 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 T R+ A++ LLY G+R+SE ++ LR+ GKG+K R+VP +V Sbjct: 135 AATPSA-IRDWAMVELLYATGIRVSELTGCDVNDVDFSNRLLRVTGKGNKTRVVPFGGTV 193 Query: 207 RKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 A+ ++ ++ ++ + P LF G+RGK ++P + + ++ + P + H L Sbjct: 194 VAALEKWLEVRE---DMAKETPALFVGVRGKRIDPRQVRTVVNRVTQAGPGP-RLSPHGL 249 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 RHS AT +L G DLR +Q +LGH +STTQIYT+V ++ + +++Q HP Sbjct: 250 RHSAATAILEGGADLRVVQELLGHANMSTTQIYTHVGTER----LKAVFNQAHP 299 >gi|261337550|ref|ZP_05965434.1| tyrosine recombinase [Bifidobacterium gallicum DSM 20093] gi|270277960|gb|EFA23814.1| tyrosine recombinase [Bifidobacterium gallicum DSM 20093] Length = 329 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 83/306 (27%), Positives = 144/306 (47%), Gaps = 29/306 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + + L GLS+ T+++Y D + L + I Q++ +R ++++ Sbjct: 16 EEYARYLRANMGLSENTVRAYAKDAVRCCTAL-----HAMGISGFEQVTTDALRDWMAQE 70 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q SL R ++ F ++ + T + K ++ LP LNE+QA TL+ Sbjct: 71 -AQITSRTSLARRTVAVRRFFGWMAEHGKTATDPAAALHIPKAAHYLPDVLNEQQAQTLM 129 Query: 139 DNVLLHTS--------------HETKW-------IDARNSAILYLLYGCGLRISEALSLT 177 + V H+ K + R+ A++ LLY G+R++E L Sbjct: 130 EQVDDEAGARGAVAQPQADGEQHDGKAQTPQQHALAQRDCAMVELLYATGIRVAELTGLN 189 Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGK 236 ++ D T+R+ GKG+K R+VP ++A+ + + L ++ LF G RG Sbjct: 190 MADVHADNRTIRVTGKGNKQRVVPYGIPAQRALDAWMEHGRAVLAAVSSGDALFLGSRGG 249 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 ++ + + + + + G+P + H LRHS ATHLL G DLR +Q +LGH L TTQ Sbjct: 250 RIDQRIVREVVHREAQRAGVP-DISPHALRHSAATHLLDGGADLREVQEMLGHSSLRTTQ 308 Query: 297 IYTNVN 302 YT+V+ Sbjct: 309 RYTHVS 314 >gi|261417486|ref|YP_003251169.1| integrase family protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373942|gb|ACX76687.1| integrase family protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327853|gb|ADL27054.1| site-specific recombinase, phage integrase family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 297 Score = 112 bits (280), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 95/303 (31%), Positives = 154/303 (50%), Gaps = 26/303 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +L +ER LS +T+QSY+ D R F+ A+ E I ++ ++ E + + Sbjct: 11 FLSHLGVERNLSPVTIQSYQEDLRHFI---AWLDENGIDLKDLQPEKLDEFLTLTAGQ-- 65 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 ++ S+ R S ++ FLKY++ + S + K + LP+ L ++ +D+ Sbjct: 66 EEYSPTSVARHFSSLRGFLKYMQIQGEYDYSTESMLATPKLGHYLPQYLTREE----IDS 121 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 V ++ + R++A++ L+Y GLRISEAL + I + L GKG+K R+V Sbjct: 122 VFESAANGKNPL--RDTALIELMYSGGLRISEALGIKLSQIDLENEWLMPIGKGNKQRLV 179 Query: 201 PLLPSVR---KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYLGL 256 PL + +A +E NI L GKP++ G ++ I QL + L Sbjct: 180 PLGSKAKENLRAWIEEGRPLTHPTTDNIIL----NAHGKPMSRMGAWK--IVQLHT-MHL 232 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + HT RHSFATH L G DLR +Q +LGH +STTQIYT+V+ D++ + + Sbjct: 233 SKQVSPHTFRHSFATHCLEAGMDLRVLQELLGHADISTTQIYTHVDK----DFIKQEHRS 288 Query: 317 THP 319 HP Sbjct: 289 FHP 291 >gi|86139973|ref|ZP_01058538.1| tyrosine recombinase XerD [Roseobacter sp. MED193] gi|85823391|gb|EAQ43601.1| tyrosine recombinase XerD [Roseobacter sp. MED193] Length = 328 Score = 112 bits (280), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 91/303 (30%), Positives = 147/303 (48%), Gaps = 26/303 (8%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87 E G ++ TL +Y D + +LA + + + +I A++ + + + Sbjct: 21 ELGAARNTLLAYGRDLKDAASWLAHHDNR------FSEAAREDIEAYLISCNAEGLSRAT 74 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 R LS ++ + + +++ + ++ ++ +LP+ L + VD LL + Sbjct: 75 RARRLSALRQLYHFAFEEGWRSDNPAIQIKGPGRAKTLPKTLE----VIEVDR-LLDAAR 129 Query: 148 ETKWIDA---RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 +T A RN+ ++ LLY G+R+SE +SL D + L +QGKG K R+VPL P Sbjct: 130 QTGRKPADRLRNTCLMELLYATGMRVSELMSLPVAAARGDPNMLLVQGKGGKERMVPLSP 189 Query: 205 SVRKAILEYY---DLCPFDLNL--NIQLPLFRGIRGKP--LNPGVFQRYIRQLRRYLGL- 256 R+A+ + D D N RGK L F I+ L G+ Sbjct: 190 PAREALRAWLMQRDEADEDSQAKGNPGSKFLFPSRGKEGHLTRHWFYLLIKDLAVTGGVD 249 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 P T HTLRH+FATHLL+NG DLR+IQ++LGH ++TT+IYT+V + E+ Q Sbjct: 250 PKKVTPHTLRHAFATHLLANGADLRAIQALLGHADIATTEIYTHVLDAR----LSELVLQ 305 Query: 317 THP 319 HP Sbjct: 306 HHP 308 >gi|218288287|ref|ZP_03492586.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1] gi|218241646|gb|EED08819.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1] Length = 307 Score = 112 bits (280), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 86/290 (29%), Positives = 141/290 (48%), Gaps = 19/290 (6%) Query: 31 LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90 S T++SY D F +L + + + LS ++R S + S+ R Sbjct: 20 FSPRTVRSYGQDLEAFRQWL-----DDRGVYDLDALSTRDVRMHASDLLAKGAAKSSVAR 74 Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150 LS +++FL++ +R + N+R K+ LPR L+E++ L+D+V Sbjct: 75 RLSCLRTFLRFCAERGWVRQVMAENVRLPKRDRRLPRYLHEEEVAALIDHV-----GGDD 129 Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210 ++ R+ A+L LY G+R+SE ++L ++ R+ GKG + R V + R+A+ Sbjct: 130 FVALRDRALLEFLYATGVRVSECVNLDVGDLDLSTGFARVLGKGGRERYVIV---GRRAV 186 Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQLRRYLGLPLSTTAHTLRHSF 269 P + +F RG L +R + R+++ GL S H LRHSF Sbjct: 187 DALRRYLPLRDRMARCSAVFINRRGGRLTDRSVRRVLERRIQEVPGLR-SIHVHGLRHSF 245 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 ATH+L+ G DLRS+Q +LGH LS+TQIYT+ + + + Y HP Sbjct: 246 ATHMLNGGADLRSVQELLGHASLSSTQIYTHTSREQ----LARAYYAAHP 291 >gi|260426671|ref|ZP_05780650.1| tyrosine recombinase XerD [Citreicella sp. SE45] gi|260421163|gb|EEX14414.1| tyrosine recombinase XerD [Citreicella sp. SE45] Length = 308 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 83/291 (28%), Positives = 139/291 (47%), Gaps = 18/291 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +L+ ERG + T +Y D F +L T + T ++ ++ ++ Sbjct: 9 GFLEAQAAERGAADNTTAAYARDLADFTRWL---TARGAGLDTAQR---ADVEDYLVTCE 62 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + + + R LS IK ++ + + +++ + + K LP+ L+ ++ L++ Sbjct: 63 AEGLAISTRARRLSSIKQLYRFAFEEGLRSDNPAVQISGPGKPKRLPKTLSIEEVDRLIE 122 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 E + RN+ ++ LLY G+R++E ++L D L I+GKG K R+ Sbjct: 123 AAASQGRTEDDRL--RNACLMQLLYATGMRVTELVTLPVSAARGDPRMLLIRGKGGKERM 180 Query: 200 VPLLPSVRKAILEYY------DLCPFDLNLNIQLPLF--RGIRGKPLNPGVFQRYIRQLR 251 VPL P R A+ + + + LF RG G L F I+++ Sbjct: 181 VPLSPPARVALATWLSRRDEQEAVAHAAGKPASVHLFPSRGKAGH-LTRHAFYLLIKEIA 239 Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G+ P T HTLRH+FATHLL NG DLR+IQ+ LGH ++TT+IYT+V Sbjct: 240 VSAGVSPGKVTPHTLRHAFATHLLQNGADLRAIQTFLGHADVATTEIYTHV 290 >gi|218131354|ref|ZP_03460158.1| hypothetical protein BACEGG_02969 [Bacteroides eggerthii DSM 20697] gi|217986286|gb|EEC52623.1| hypothetical protein BACEGG_02969 [Bacteroides eggerthii DSM 20697] Length = 294 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 84/306 (27%), Positives = 150/306 (49%), Gaps = 23/306 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++L L ER SK T++ Y+ D ++ L + EE + T + IR +I+ Sbjct: 5 DSFLDYLLYERNYSKGTVRYYQAD----ILELQKFGEELLGDLTPSDVDAGLIREWITSL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + ++ R LS ++S+ KYL ++ + + + KK LP L E L+ Sbjct: 61 MDRGCAPNTVNRKLSSVRSYYKYLLRKGMVAADPLQKITGPKKKKPLPVFLREGDVNRLL 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D+V E R+ I+ + Y G+R+SE + L ++I S +++ GK +K R Sbjct: 121 DDVDFGEGFEG----CRDRLIIEMFYATGMRLSELIGLDDKDIDFSASLIKVTGKRNKQR 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-----FRGIRGKPLNPGVFQRYIRQLRRY 253 ++P +R ++ EY ++ N LP+ F G+ LN + +++ Sbjct: 177 LLPFDEELRCSMQEYVNV------RNQALPVRSDAFFIRKTGERLNRSIVAYIVKRNLSK 230 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 + + H LRH+FAT +L+NG DL SI+ +LGH L+TT++YT+ + + ++ Sbjct: 231 VVTVKKRSPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHTTFEE----LKKV 286 Query: 314 YDQTHP 319 Y+Q HP Sbjct: 287 YNQAHP 292 >gi|153830013|ref|ZP_01982680.1| tyrosine recombinase XerC [Vibrio cholerae 623-39] gi|148874498|gb|EDL72633.1| tyrosine recombinase XerC [Vibrio cholerae 623-39] Length = 311 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 78/304 (25%), Positives = 154/304 (50%), Gaps = 16/304 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L E+GLS T ++Y+ +L ++ + QL +R + + + Q + Sbjct: 24 LHTEKGLSLYTQRNYKQQLETMTQYLV-----QVGLTHWSQLDSAWVRQLVMQGKRQGMK 78 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S+ LS ++SFL +L R + + +K +LP+ L+ + L++ Sbjct: 79 ASSIATRLSSLRSFLDFLILRGELEANPAKGVSAPRKQRTLPKNLDVDEMAQLLEVT--- 135 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + + R+ AI+ L+YG GLR++E +S+ +++ + +R+ GKG+K R V Sbjct: 136 ---DDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVWFAG 192 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 ++ + ++ L L + + LF G ++ Q+ + + + + + H Sbjct: 193 QAQEWVGKWLKLRS-QLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISPHK 251 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ ++ + ++YDQ HP +K Sbjct: 252 LRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQH----LAQVYDQAHPRARKK 307 Query: 325 DKKN 328 +K + Sbjct: 308 NKDD 311 >gi|309789594|ref|ZP_07684175.1| phage integrase family protein [Oscillochloris trichoides DG6] gi|308228330|gb|EFO81977.1| phage integrase family protein [Oscillochloris trichoides DG6] Length = 294 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 85/284 (29%), Positives = 144/284 (50%), Gaps = 11/284 (3%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L ++ ++ S+ T +Y D Q +FLA E Q + ++ +I AF+ Sbjct: 6 EQFLVSMATDQMRSEHTCSAYRTDLEQLRLFLA--AREVADWQAV---THDDILAFMISL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + ++ R + +KSF +L +++I + ++ + K + P+A+ + L+ Sbjct: 61 RERGYAMSTMARRTAAMKSFFGFLLEQQIIKKDPTSHIDSPKVNRDRPKAITQFDMDELL 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + L + E+ R+ A+L LL G+R+SE ++L +I T+R + K + R Sbjct: 121 ELPLRSSGPES----LRDKAMLELLAATGMRVSELVTLELADISLSAGTVRCRSKSGRER 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 ++P+ + A+ EY D+ L + + P LF RGK L F ++ +GL Sbjct: 177 VLPIGLTATTALEEYLDIARNQLVRSGETPILFLNHRGKQLTRQGFWLILKGYADQIGLH 236 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T HTLRHSFA HL+ G DLR +Q LGH LSTTQIYT + Sbjct: 237 -DLTPHTLRHSFAAHLVYEGADLREVQERLGHASLSTTQIYTQM 279 >gi|257068693|ref|YP_003154948.1| tyrosine recombinase XerD subunit [Brachybacterium faecium DSM 4810] gi|256559511|gb|ACU85358.1| tyrosine recombinase XerD subunit [Brachybacterium faecium DSM 4810] Length = 332 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 98/319 (30%), Positives = 149/319 (46%), Gaps = 34/319 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L +L IERGLS TL +Y D R++L LA + + +QL ++ Sbjct: 24 EQYLSHLRIERGLSANTLAAYRRDLRRYLAELARRDIDATAVDP-QQLGR-----WLQSL 77 Query: 79 RTQKIGDRSLKRSLS--------GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 RT G L S + G+ SFL ++++ + L S +LPR L Sbjct: 78 RTGADGGSVLSASSAARSLAAVRGLHSFLD---AERVSSSGDPAR---LVPSPALPRRLP 131 Query: 131 EKQALTLVDNVLLHTSHETKWIDA-----RNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 A+ V+ ++ + DA R+ A+L +LYG G RISEA L +I + Sbjct: 132 HPLAIAQVEALIEAAGRPSTGRDATARALRDRALLEVLYGLGARISEATGLDVDDIDAQE 191 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLP-LFRGIRGKPLNPGVF 243 ++GKGDK R+VP+ +A+ Y P P +F G RG L Sbjct: 192 RAAVLRGKGDKHRVVPVGRFALEALEAYLTRGRPVLAARGTGTPAIFLGSRGTRLTRQAA 251 Query: 244 QRYIRQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + +++ LP + HTLRHS+ATHLL G D+R++Q +LGH ++TTQ+YT Sbjct: 252 WQVVQRAADAAELSDLPEPISPHTLRHSYATHLLHGGADVRAVQELLGHASVTTTQLYTQ 311 Query: 301 VNSKNGGDWMMEIYDQTHP 319 V D + E + HP Sbjct: 312 VTV----DSLRETHAGAHP 326 >gi|254457347|ref|ZP_05070775.1| phage integrase [Campylobacterales bacterium GD 1] gi|207086139|gb|EDZ63423.1| phage integrase [Campylobacterales bacterium GD 1] Length = 278 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 89/304 (29%), Positives = 157/304 (51%), Gaps = 40/304 (13%) Query: 17 ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 +R +LQ+LE RG S+LT++SY+ + L + ++ I + ++T I Sbjct: 8 KRVEFLQSLEDFRGYSELTIKSYDEAITEALRY----------VEIIEEDTHTTINLMPY 57 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + + ++ +++ + LS I++F+KYL KI + ++K + +LP+ ++ K L Sbjct: 58 RIKISQLNPKTISKKLSAIRTFVKYLNDNKIKI--YLKADESVKVAKTLPKPISHKHIL- 114 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L H +++ + +LY GLRISE SL +I D+ +R+ GKG+K Sbjct: 115 ---EALEHAEFYERFV-------VTMLYSLGLRISELASLKLSDISDEW--IRVLGKGNK 162 Query: 197 IRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 R VPLL + R+ I EY + CP ++ LF + L+ + + ++ + +G Sbjct: 163 HRDVPLLRTTRELIDEYLSNNCP-------KIFLFEA-NDERLSENSLRYTVNKVFKRVG 214 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 L + T H LRHS+AT LL++ + + +LGH ++TTQIYT K G + Y+ Sbjct: 215 LKV--TPHQLRHSYATALLNSSAPIADVSELLGHSSMATTQIYT----KLGSALKQQNYN 268 Query: 316 QTHP 319 + HP Sbjct: 269 KAHP 272 >gi|315646363|ref|ZP_07899481.1| integrase family protein [Paenibacillus vortex V453] gi|315278006|gb|EFU41326.1| integrase family protein [Paenibacillus vortex V453] Length = 294 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 88/301 (29%), Positives = 148/301 (49%), Gaps = 16/301 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++ LE + LS+ T++SY D F+ + A + ++T + ++ T + ++ + R Sbjct: 7 EYVTYLEEVKRLSRSTIESYRADLNGFIEYAA---DREVT--HPQDVNRTVLGLYLGRLR 61 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q S R + ++SF +YL ++ + + + K P+A+ +Q VD Sbjct: 62 QQGKAASSQLRCTASLRSFFQYLVRQSVIGQDPTQLLDRPKPERKPPQAVTIEQ----VD 117 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 +L +T AR+ A+L LLY G+++SE +SL+ ++ + LR G K RI Sbjct: 118 KLLSAPDSDTPQ-GARDRAMLELLYASGIKVSELVSLSIHDLNMEMRFLRCAVPGGKERI 176 Query: 200 VPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +P+ +++ Y D+ + + LF G L F + I++ + + Sbjct: 177 LPISQIAAQSVAYYMRDMRSQLIRDAEEEALFLNSLGTRLTRQGFWKIIKKYGKLAEIDE 236 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 T HTLRHSFA HLL NG DLRS+Q +LGH LSTT +Y + M E+YD H Sbjct: 237 EITPHTLRHSFAIHLLQNGADLRSVQEMLGHSALSTTGMYQSTKKS-----MKEVYDHYH 291 Query: 319 P 319 P Sbjct: 292 P 292 >gi|229520080|ref|ZP_04409508.1| tyrosine recombinase XerC [Vibrio cholerae TM 11079-80] gi|229342868|gb|EEO07858.1| tyrosine recombinase XerC [Vibrio cholerae TM 11079-80] Length = 311 Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 78/304 (25%), Positives = 154/304 (50%), Gaps = 16/304 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L E+GLS T ++Y+ +L ++ + QL +R + + + Q + Sbjct: 24 LHTEKGLSLYTQRNYKQQLETMTQYLV-----QVGLTHWTQLDSAWVRQLVMQGKRQGMK 78 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S+ LS ++SFL +L R + + +K +LP+ L+ + L++ Sbjct: 79 ASSIATRLSSLRSFLDFLILRGELEANPAKGVSAPRKQRTLPKNLDVDEMAQLLEVT--- 135 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + + R+ AI+ L+YG GLR++E +S+ +++ + +R+ GKG+K R V Sbjct: 136 ---DDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVWFAG 192 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 ++ + ++ L L + + LF G ++ Q+ + + + + + H Sbjct: 193 QAQEWVGKWLKLRS-QLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISPHK 251 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ ++ + ++YDQ HP +K Sbjct: 252 LRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQH----LAQVYDQAHPRARKK 307 Query: 325 DKKN 328 +K + Sbjct: 308 NKDD 311 >gi|326562807|gb|EGE13102.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 46P47B1] gi|326563212|gb|EGE13480.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 12P80B1] gi|326563472|gb|EGE13735.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 103P14B1] gi|326573782|gb|EGE23739.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 101P30B1] Length = 330 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 97/309 (31%), Positives = 146/309 (47%), Gaps = 26/309 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +W L ++ SK T+ +Y+ QF FL R+ T R F ++ Sbjct: 29 SWCDELRLQ-NYSKHTITTYQTALIQFFNFLESDNYLGGDPLACRRQDLT--RFFSTRLE 85 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 +KI S K SLS I+ F ++L K+ + +N K S PR L L+ Sbjct: 86 EEKIKPISAKLSLSAIRIFYQFLIKQGVIA----VNPTTGYKIKSAPRKLPTVADELLIK 141 Query: 140 NVLLHTSHETK-----WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 +L + E WI R+ A+ L+Y GLR+SE L ++ D +R+ GKG Sbjct: 142 QLLDQKTPEDTAKAYLWI--RDKAMFELMYSSGLRLSELAGLNMGDVNFDIGIVRVLGKG 199 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQL 250 +K R VP+ +KA++ D P NL N + G L+ Q ++ Sbjct: 200 NKTRQVPV---GKKAMIALQDYLPHR-NLWQKKNCKALFISERHGTRLSTRAIQLRLKVC 255 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ L+ H LRH FA+H+LS+ GDLR+IQ +LGH +STTQIYT+V+ + Sbjct: 256 ATMAGIELNMYPHLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHVDFGA----L 311 Query: 311 MEIYDQTHP 319 ++YD HP Sbjct: 312 TKVYDHAHP 320 >gi|103487281|ref|YP_616842.1| phage integrase [Sphingopyxis alaskensis RB2256] gi|98977358|gb|ABF53509.1| phage integrase [Sphingopyxis alaskensis RB2256] Length = 303 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 89/305 (29%), Positives = 146/305 (47%), Gaps = 31/305 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ + ERG S+ TL +Y D Q E++ + +R ++ R+ Sbjct: 10 FLEMMAAERGASRNTLTAYRRDLEQ--------AAERVK-GPLGAADAAALRQLMADYRS 60 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + S R LS ++ F +L ++ L++ LPR L + L + Sbjct: 61 --LSASSAARKLSALRQFFAFLLDEGERADNPALDIARPATRRPLPRILTHDEIRRLFEQ 118 Query: 141 VLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + E A R +L LLYG GLR +E +SL + ++ ++ L ++GKGDK R+ Sbjct: 119 AVAEAEGEAPPAGAVRMLLLLELLYGSGLRATELVSLPRRAVLREREYLIVRGKGDKERL 178 Query: 200 VPLLPSVRKAILEY----YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 VPL R A + D P+ LF + +FQ +R L G Sbjct: 179 VPLSARARAAFDRWLPLLADGSPW---------LFPSGKAHISRVRLFQ-MLRDLAARAG 228 Query: 256 L-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 + P + + H LRH+FATHLL G DLR++Q +LGH ++TT+IYT+V+S+ ++E+ Sbjct: 229 VDPAAVSPHVLRHAFATHLLEGGADLRALQLMLGHADIATTEIYTHVDSRR----LVELV 284 Query: 315 DQTHP 319 ++ HP Sbjct: 285 NRRHP 289 >gi|297182869|gb|ADI19020.1| site-specific recombinase xerd [uncultured alpha proteobacterium HF0070_05I22] Length = 314 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 82/312 (26%), Positives = 147/312 (47%), Gaps = 24/312 (7%) Query: 21 WLQNLEIERGLSKLTLQSYE---CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 +L L R +S TL +Y DT Q L + T+ + ++R IS Sbjct: 19 FLDALVAMRAVSANTLAAYRRDLADTSQLL---------HASKTTLTDCNADDLRQVISL 69 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 + + RS+ R LS ++ F+ + +I T++ + N LP++L+E + + L Sbjct: 70 WHQRGLSARSVARRLSALRQFMGWAVDDQIRTDNPCRWIDNPSLPALLPKSLSEDEVMKL 129 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 + + + + R A+L +LY GLR+SE + L ++ + GKG + Sbjct: 130 LAAA---NAMQPPALSCRAVAMLEILYATGLRVSELVHLQVSQFRRQPDSILVAGKGGRE 186 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL- 256 R+VPL + ++A ++ +L + +F G+ + + QL + + + Sbjct: 187 RLVPLGLAAKRAAADWLELRDATFGYLLSDYMFPGVSSTAAGGAMTRHEFAQLLKTIAVA 246 Query: 257 ----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 P T H +RHSFATH+L+ G DLRS+Q++LGH ++TTQIYT+ D + Sbjct: 247 AQIDPRRVTPHKIRHSFATHMLNRGADLRSLQNMLGHADIATTQIYTSSRP----DRLAG 302 Query: 313 IYDQTHPSITQK 324 + HP +++ Sbjct: 303 LVADAHPLASKR 314 >gi|326572966|gb|EGE22945.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis CO72] Length = 331 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 97/309 (31%), Positives = 146/309 (47%), Gaps = 26/309 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +W L ++ SK T+ +Y+ QF FL R+ T R F ++ Sbjct: 29 SWCDELRLQ-NYSKHTITTYQTALIQFFNFLESDNYLGGDPLACRRQDLT--RFFSTRLE 85 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 +KI S K SLS I+ F ++L K+ + +N K S PR L L+ Sbjct: 86 EEKIKPISAKLSLSAIRIFYQFLIKQGVIA----VNPTTGYKIKSAPRKLPTVADELLIK 141 Query: 140 NVLLHTSHETK-----WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 +L + E WI R+ A+ L+Y GLR+SE L ++ D +R+ GKG Sbjct: 142 QLLDQKTPEDTAKAYLWI--RDKAMFELMYSSGLRLSELAGLNMGDVNFDIGIVRVLGKG 199 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQL 250 +K R VP+ +KA++ D P NL N + G L+ Q ++ Sbjct: 200 NKTRQVPV---GKKAMIALQDYLPHR-NLWQKKNCKALFISERHGTRLSTRAIQLRLKVC 255 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ L+ H LRH FA+H+LS+ GDLR+IQ +LGH +STTQIYT+V+ + Sbjct: 256 ATMAGIELNMYPHLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHVDFGA----L 311 Query: 311 MEIYDQTHP 319 ++YD HP Sbjct: 312 TKVYDHAHP 320 >gi|213616311|ref|ZP_03372137.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 267 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/253 (31%), Positives = 133/253 (52%), Gaps = 13/253 (5%) Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 +++ +++R S R LS ++ F ++L + K + + + K LP+ L Sbjct: 23 DLQTLLAERVEGGYKATSSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDL 82 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 +E Q L+ L+ ++ R+ A+L +LY GLR+SE + LT +I Q +R Sbjct: 83 SEAQVERLLQAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVR 137 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYI 247 + GKG+K R+VPL + Y + P+ LN ++I + LF R + + F I Sbjct: 138 VIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRI 196 Query: 248 RQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 + G+ + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ Sbjct: 197 KHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER- 255 Query: 307 GDWMMEIYDQTHP 319 + +++ Q HP Sbjct: 256 ---LRQLHQQHHP 265 >gi|167893119|ref|ZP_02480521.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei 7894] gi|167917844|ref|ZP_02504935.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei BCC215] gi|237811111|ref|YP_002895562.1| tyrosine recombinase XerD [Burkholderia pseudomallei MSHR346] gi|254296371|ref|ZP_04963828.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e] gi|157805883|gb|EDO83053.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e] gi|237504621|gb|ACQ96939.1| tyrosine recombinase XerD [Burkholderia pseudomallei MSHR346] Length = 333 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 86/277 (31%), Positives = 137/277 (49%), Gaps = 15/277 (5%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 +E GLS+ TL +Y D + F +LA ++ + + TE +I+ R K Sbjct: 54 LEHGLSRNTLDAYRRDLQLFAQWLA--ARYAASVDHASEPTLTE---YIAARSDGKA--T 106 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R LS + + + + L + + K++ P L+E Q V+ +L Sbjct: 107 SSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQ----VEALLAAPD 162 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 +T + R+ +L L+Y GLR+SE ++L + ++ +R+ GKG K R+VP V Sbjct: 163 VDTP-LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPF-GEV 220 Query: 207 RKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 +E Y D P L LF RG + F I++ + + + + HT Sbjct: 221 AHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHT 280 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 LRH+FATHLL++G DLR +Q +LGH +STTQIYT+V Sbjct: 281 LRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 317 >gi|300773739|ref|ZP_07083608.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC 33861] gi|300759910|gb|EFK56737.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC 33861] Length = 293 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 89/309 (28%), Positives = 154/309 (49%), Gaps = 27/309 (8%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 +Q +L L E+ S T+++Y T + IF F ++ I + + + IR ++S Sbjct: 3 QQRFLNFLRFEKRYSNHTIEAY---THELTIFFTFLQDQGIPEE---EADHRVIRFYLSH 56 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 + S+ RS+S ++++ K+L++ +T ++ + ++ LK LP + + + + L Sbjct: 57 LMEEGRQATSVNRSISALRTYYKFLQRESLTDQNPLTLIKALKTPKKLPSVMEKDKMVGL 116 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 +D + + D R+ +L LL+G G+R++E L + +I + I GK +K Sbjct: 117 LDQM---EGAVDSFTDERDYLVLELLFGTGIRLTELLQIKITDIDFYNKNILILGKRNKE 173 Query: 198 RIVPL---LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 R+VP+ L K ++ D D N L GK P + R + RYL Sbjct: 174 RLVPVNHTLLEKLKIYIQQLDNQKID---NKTAFLIVTKEGKQAYPKMIYRIVH---RYL 227 Query: 255 GLPLST----TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 L +ST + H LRH+FAT LL NG DL +I+ +LGH L+ TQ+YT+ N + + Sbjct: 228 SL-ISTQRKKSPHVLRHTFATALLDNGADLNAIKELLGHAGLAATQVYTH----NSVERL 282 Query: 311 MEIYDQTHP 319 +Y Q HP Sbjct: 283 KSVYKQAHP 291 >gi|284045117|ref|YP_003395457.1| integrase [Conexibacter woesei DSM 14684] gi|283949338|gb|ADB52082.1| integrase family protein [Conexibacter woesei DSM 14684] Length = 313 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 86/295 (29%), Positives = 133/295 (45%), Gaps = 19/295 (6%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 RG ++ T +Y D QF+ + + + +R + + ++ Sbjct: 32 RGAAEKTRHAYAVDGGQFVRWADAHRLAPADVNP------RALRRYAAGLTEAGQAPTTV 85 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 R L+ ++S + L + ++ + +K+ LP L + L+D + T+ Sbjct: 86 GRKLASLRSLFRTLVEHGELQQNPADLLSAPRKAQRLPYVLKPVEVAALLDRIPADTA-- 143 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 + R+ A+ L Y GLR E + L +I D +R++GKG K RIVP K Sbjct: 144 ---LALRDRALFELAYASGLRAEELVMLDVGSIEFDGERVRVEGKGAKTRIVPAGEPALK 200 Query: 209 AILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR-QLRRYLGLPLS--TTAHT 264 AI Y D P LF G+ L+ +R +R R+ G+ + + H Sbjct: 201 AIARYLDRARPALATAESDGALFLSKSGRRLSTSDVRRRLRVWARQAAGVSTAGGVSPHA 260 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LRHSFATHLL NG DLRSIQ +LGH +STTQ+YT V S + Y +HP Sbjct: 261 LRHSFATHLLENGADLRSIQELLGHASISTTQVYTRVESAR----LRSAYANSHP 311 >gi|229527130|ref|ZP_04416524.1| tyrosine recombinase XerC [Vibrio cholerae 12129(1)] gi|229335361|gb|EEO00844.1| tyrosine recombinase XerC [Vibrio cholerae 12129(1)] Length = 311 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 78/304 (25%), Positives = 154/304 (50%), Gaps = 16/304 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L E+GLS T ++Y+ +L ++ + QL +R + + + Q + Sbjct: 24 LHTEKGLSLYTQRNYKQQLETMTQYLV-----QVGLTHWTQLDSAWVRQLVMQGKRQGMK 78 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S+ LS ++SFL +L R + + +K +LP+ L+ + L++ Sbjct: 79 ASSIATRLSSLRSFLDFLILRGELEANPAKGVSAPRKQRTLPKNLDVDEMAQLLEVT--- 135 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + + R+ AI+ L+YG GLR++E +S+ +++ + +R+ GKG+K R V Sbjct: 136 ---DDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVWFAG 192 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 ++ + ++ L L + + LF G ++ Q+ + + + + + H Sbjct: 193 QAQEWVGKWLKLRS-QLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISPHK 251 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ ++ + ++YDQ HP +K Sbjct: 252 LRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQH----LAQVYDQAHPRARKK 307 Query: 325 DKKN 328 +K + Sbjct: 308 NKDD 311 >gi|330836614|ref|YP_004411255.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374] gi|329748517|gb|AEC01873.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374] Length = 310 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 102/334 (30%), Positives = 168/334 (50%), Gaps = 42/334 (12%) Query: 10 VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69 ++ ++ +E ++++N+ +GLS T ++Y D F FL EK +I ++ +S + Sbjct: 1 MNHQVFEEYCDYIRNV---KGLSAHTEKAYRHDLFVFGEFL-----EKFSI-SVHDVSPS 51 Query: 70 EIRAFIS--KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK-SNSLP 126 +IR+F+ R + +++R S I F Y+ +R E N + + +L+ S LP Sbjct: 52 DIRSFLVWLPERRKDFSPGTVQRLKSTINGFYTYVVRRG-KIEKNPVALISLRSASRRLP 110 Query: 127 RALNEKQALTLVDNVLLHTSHETKWID---ARNSAILYLLYGCGLRISEALSLTPQNIMD 183 L + + L++ W D R+ IL LLY G R SE L++ ++ Sbjct: 111 TVLEKSETERLLN---------LPWNDFSSLRDVLILNLLYSTGCRRSELLAIDVDDLET 161 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD--------LCPFD---LNLNIQLPLFRG 232 Q + I GKG + R V L P V K + +Y L P + + N L L G Sbjct: 162 GQERILIHGKGGRERYVFLTPRVTKLLGKYLSERKELLSRLEPAEKEGADWNALL-LSNG 220 Query: 233 IR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291 R GK L+ G+ + +R L + + T H LRH+FATHLL N +R++Q +LGH Sbjct: 221 RRKGKRLSTGIITSIFGKYKRELEIHKAFTPHVLRHTFATHLLDNDAGIRTVQELLGHVN 280 Query: 292 LSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325 LSTTQIYT+V+++ + ++YD HP +K+ Sbjct: 281 LSTTQIYTHVSAER----LRKVYDACHPHGRKKE 310 >gi|254181547|ref|ZP_04888144.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1655] gi|254298194|ref|ZP_04965646.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e] gi|157808367|gb|EDO85537.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e] gi|184212085|gb|EDU09128.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1655] Length = 329 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 86/277 (31%), Positives = 137/277 (49%), Gaps = 15/277 (5%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 +E GLS+ TL +Y D + F +LA ++ + + TE +I+ R K Sbjct: 50 LEHGLSRNTLDAYRRDLQLFAQWLA--ARYAASVDHASEPTLTE---YIAARSDGKA--T 102 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R LS + + + + L + + K++ P L+E Q V+ +L Sbjct: 103 SSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQ----VEALLAAPD 158 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 +T + R+ +L L+Y GLR+SE ++L + ++ +R+ GKG K R+VP V Sbjct: 159 VDTP-LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPF-GEV 216 Query: 207 RKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 +E Y D P L LF RG + F I++ + + + + HT Sbjct: 217 AHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHT 276 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 LRH+FATHLL++G DLR +Q +LGH +STTQIYT+V Sbjct: 277 LRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 313 >gi|316985480|gb|EFV64427.1| tyrosine recombinase XerC [Neisseria meningitidis H44/76] Length = 329 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 124/244 (50%), Gaps = 11/244 (4%) Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 +G+R+L R LS + + +L KR + +++ K+ +P+AL ++ ++D + Sbjct: 97 LGERTLARKLSSWRQYCVWLVKRGLMHADPTADIKPPKQPERVPKALPQEWLNRMLDLPV 156 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202 + R+ A+ L+YG GLR+SE L ++ D++ + + GKG K R VPL Sbjct: 157 ----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVIGKGRKQRQVPL 212 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 + +A+ Y P + LF G G L+ Q+ + Q G + Sbjct: 213 VGKSVEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 269 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322 H +RHS+A HLL D+R++Q +LGH LSTTQIYT ++ D + +YD+ HP Sbjct: 270 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAHPRAK 325 Query: 323 QKDK 326 ++D+ Sbjct: 326 RQDE 329 >gi|167569023|ref|ZP_02361897.1| site-specific tyrosine recombinase XerD [Burkholderia oklahomensis C6786] Length = 325 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 85/277 (30%), Positives = 132/277 (47%), Gaps = 15/277 (5%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 +E GLS+ TL +Y D + F +LA E + L+ +I+ R K Sbjct: 46 LEHGLSRNTLDAYRRDLQLFAQWLAAQHAENVDHANEAMLT-----GYIAARSDGKA--T 98 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R LS + + + + L + + K++ P L+E Q L+ + T Sbjct: 99 SSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTP 158 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 + R+ +L L+Y GLR+SE ++L + ++ +R+ GKG K R+VP V Sbjct: 159 -----LGLRDRTMLELMYASGLRVSELVTLKSVEVGLNEGVVRVTGKGSKERLVPF-GEV 212 Query: 207 RKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 +E Y D P L LF RG + F I++ + + + HT Sbjct: 213 AHGWIERYLRDGRPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPHT 272 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 LRH+FATHLL++G DLR +Q +LGH +STTQIYT+V Sbjct: 273 LRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 309 >gi|229525024|ref|ZP_04414429.1| tyrosine recombinase XerC [Vibrio cholerae bv. albensis VL426] gi|229338605|gb|EEO03622.1| tyrosine recombinase XerC [Vibrio cholerae bv. albensis VL426] Length = 311 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 78/304 (25%), Positives = 154/304 (50%), Gaps = 16/304 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L E+GLS T ++Y+ +L ++ + QL +R + + + Q + Sbjct: 24 LHTEKGLSLYTQRNYKQQLETMTQYLV-----QVGLTHWTQLDAAWVRQLVMQGKRQGMK 78 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S+ LS ++SFL +L R + + +K +LP+ L+ + L++ Sbjct: 79 ASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRTLPKNLDVDEMAQLLEVT--- 135 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + + R+ AI+ L+YG GLR++E +S+ +++ + +R+ GKG+K R V Sbjct: 136 ---DDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVWFAG 192 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 ++ + ++ L L + + LF G ++ Q+ + + + + + H Sbjct: 193 QAQEWVGKWLKLRS-QLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISPHK 251 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ ++ + ++YDQ HP +K Sbjct: 252 LRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQH----LAQVYDQAHPRARKK 307 Query: 325 DKKN 328 +K + Sbjct: 308 NKDD 311 >gi|217964580|ref|YP_002350258.1| tyrosine recombinase XerC [Listeria monocytogenes HCC23] gi|254799346|sp|B8DG54|XERC_LISMH RecName: Full=Tyrosine recombinase xerC gi|217333850|gb|ACK39644.1| tyrosine recombinase XerC [Listeria monocytogenes HCC23] gi|307570856|emb|CAR84035.1| tyrosine integrase/recombinase [Listeria monocytogenes L99] Length = 300 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 83/309 (26%), Positives = 146/309 (47%), Gaps = 21/309 (6%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 K Q +L L ER S T +YE D F FL + I+T +Q+++ ++R ++ Sbjct: 6 KLEQQFLDYLHSERNYSVNTSTAYENDLLDFRRFL-----NEQAIETYQQVTFLDVRIYL 60 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 ++ + + ++ R +S ++SF +L + + E+ + + K LP+ ++ Sbjct: 61 TELKQKSFSRTTVARKISSLRSFYTFLLRENVIAENPFTYVSHAKNQLRLPKFFYSEEME 120 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L V + + + R+ +L +LYG G+R+SE + ++ + I+GKG+ Sbjct: 121 ALFQVVY----EDNETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGN 176 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPLNPGVFQRYIRQL 250 K R VP AI +Y P L + L G PL + + ++ Sbjct: 177 KERYVPFGVYAEDAITDY---LPKRTELMTRYKKSHDALLVNHYGDPLTTRGIRYCLTKI 233 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 L H LRH+FAT LL+NG D+R++Q +LGH L++TQIYT+V ++ + Sbjct: 234 ISKASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLASTQIYTHVTKEH----L 289 Query: 311 MEIYDQTHP 319 Y + HP Sbjct: 290 KSTYMKHHP 298 >gi|34222761|sp|O31087|XERC_SERMA RecName: Full=Tyrosine recombinase xerC gi|2625019|gb|AAC46276.1| site specific recombinase [Serratia marcescens] Length = 303 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 87/300 (29%), Positives = 150/300 (50%), Gaps = 21/300 (7%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L+ L++ER LS LT SY +RQ + E +T T L +R ++ + Sbjct: 16 LRYLKVERQLSPLTQLSY---SRQLTALMRLAQEIGVTDWTT--LDAARVRMLAARSKRA 70 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 + SL LS ++SFL +L + + + +R + LP+ ++ + L++ Sbjct: 71 GLQSASLALRLSSLRSFLDWLVSQGVLHANPAKGIRTPRSGRHLPKNIDVDEMNQLLEID 130 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 L + R+ A+L ++YG GLR+SE + L +++ + + GKG K R +P Sbjct: 131 L------NDPLAVRDRAMLEVMYGAGLRLSELVGLDCRHVDMAAGEVWVMGKGSKERKLP 184 Query: 202 LLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 + R A+ LE++ L DL +F +G+ ++ Q+ + G+ Sbjct: 185 I---GRTAVTWLEHW-LAMRDLFGPQDDAMFLSNQGRRISTRNVQKRFAEWGVKQGVNSH 240 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHSFATH+L + GDLR++Q +LGH L+TTQIYT+++ ++ + +YD HP Sbjct: 241 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----LANVYDAAHP 296 >gi|325129523|gb|EGC52350.1| tyrosine recombinase XerC [Neisseria meningitidis OX99.30304] gi|325135646|gb|EGC58263.1| tyrosine recombinase XerC [Neisseria meningitidis M0579] Length = 305 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 83/306 (27%), Positives = 146/306 (47%), Gaps = 13/306 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+N+ + G S+ T+ +Y D + LA E + LS + A + + Sbjct: 13 YLENI-VREGKSEHTVAAYRRDLEELFALLAQMPSEDAG-GVPQDLSRRDFTAALRRLSQ 70 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + R+L R LS + + +L +R + +++ K+ +P+AL ++ ++D Sbjct: 71 RGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQEWLNRMLDL 130 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + + R+ A+ L+YG GLR+SE L ++ D++ + + GKG K R V Sbjct: 131 PV----DGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQV 186 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 L +A+ Y P + LF G G L+ Q+ + Q G Sbjct: 187 SLTGKSVEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHV 243 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 + H +RHS+A HLL D+R++Q +LGH LSTTQIYT ++ D + +YD+ HP Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDF----DHIARLYDEAHPR 299 Query: 321 ITQKDK 326 ++D+ Sbjct: 300 AKRQDE 305 >gi|189502574|ref|YP_001958291.1| hypothetical protein Aasi_1239 [Candidatus Amoebophilus asiaticus 5a2] gi|189498015|gb|ACE06562.1| hypothetical protein Aasi_1239 [Candidatus Amoebophilus asiaticus 5a2] Length = 299 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 91/312 (29%), Positives = 155/312 (49%), Gaps = 33/312 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF--YTEEKITIQTIRQLSYTEIRAFIS 76 Q + +L++ER L++ ++ +Y D R+ F+ +T+QT T +R F+ Sbjct: 8 QQFEIHLQLERSLAENSILAYGSDLRKLCQFIELRQLGLSPLTLQT------THLRDFLM 61 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLK-KRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 IG S R LS I+ F ++L + + T+ L R + LP L+ + Sbjct: 62 YLYELGIGATSQARILSAIRGFYQFLLLEGYLETDPTKLVERPVL-GRKLPHTLSVHEI- 119 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 +L T + + RN A+L LY GLR+SE +SL +I ++ L++ GKG+ Sbjct: 120 ----EILFGTIDHSTAMGMRNRAMLETLYSSGLRVSELISLRMSDIYFEEMFLQVLGKGN 175 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL--------FRGIRGKPLNPGVFQRYI 247 K R+VP + K L+Y + + + I P+ F RG ++ + I Sbjct: 176 KQRLVP----IGKIALKYLRI--YIEEVRIHFPIKKEAANCVFLNKRGSKMSRVMVFLII 229 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 ++L GL + HT RHSFATHL+ G DLR++Q++LGH ++TT+IYT+++ Sbjct: 230 KELASKAGLQQEISPHTFRHSFATHLVEGGADLRAVQAMLGHESITTTEIYTHLDR---- 285 Query: 308 DWMMEIYDQTHP 319 ++ + + HP Sbjct: 286 SYLQQTIHEFHP 297 >gi|157368433|ref|YP_001476422.1| site-specific tyrosine recombinase XerC [Serratia proteamaculans 568] gi|157320197|gb|ABV39294.1| tyrosine recombinase XerC [Serratia proteamaculans 568] Length = 303 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 89/300 (29%), Positives = 152/300 (50%), Gaps = 21/300 (7%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L+ L++ER LS LT SY +RQ +A E +T + L ++R ++ + Sbjct: 16 LRYLKVERQLSPLTQLSY---SRQLQALMALAQEIGVTEWPL--LDAAKVRQLAARSKRA 70 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 + SL LS ++SFL + + + + +R + LP+ ++ + L+ N+ Sbjct: 71 GLQSSSLALRLSALRSFLDWQVSQGMLIANPAKGIRTPRSGRHLPKNIDVDEMNQLL-NI 129 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 L+ + R+ A+L ++YG GLR+SE + L +++ + + GKG K R Sbjct: 130 DLNDP-----LAVRDRAMLEVMYGAGLRLSELVGLDCRHVDLAAGEIWVLGKGSKERK-- 182 Query: 202 LLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 LP R A+ LE++ L DL +F +GK ++ Q+ + G+ Sbjct: 183 -LPVGRTAVTWLEHW-LAMRDLFGPSDDAMFLSNQGKRISTRNVQKRFAEWGVKQGVNSH 240 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHSFATH+L + GDLR++Q +LGH L+TTQIYT+++ ++ + +YD HP Sbjct: 241 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----LANVYDAAHP 296 >gi|260774849|ref|ZP_05883751.1| tyrosine recombinase XerC [Vibrio coralliilyticus ATCC BAA-450] gi|260609274|gb|EEX35429.1| tyrosine recombinase XerC [Vibrio coralliilyticus ATCC BAA-450] Length = 309 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 82/304 (26%), Positives = 151/304 (49%), Gaps = 22/304 (7%) Query: 25 LEIERGLSKLTLQSYECDTR---QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L E+GLS T ++Y+ Q L+ + ++ +RQL+ SK Sbjct: 23 LRSEKGLSLHTQRNYKQQLETMAQHLVTMGLKDWSQVDAAWVRQLA--------SKGMRD 74 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 + SL LS ++SF +L R T + + +K LP+ L+ + L++ Sbjct: 75 GMKASSLATRLSALRSFFDFLILRGELTANPAKGVSAPRKKRPLPKNLDVDEVGQLLE-- 132 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 +E + R+ A++ L+YG GLR++E +S+ +++ +R+ GKGDK R VP Sbjct: 133 ----VNEDDPLAIRDRAMMELMYGAGLRLAEMVSVDVRDVSLSSGEIRVVGKGDKERKVP 188 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 + + ++ + N + + LF G ++ Q+ + + + + + Sbjct: 189 FAGMAEEWVAKWLKVRGALANTD-EPALFVSKLGVRISHRNVQKRMAEWGQKQSVASHIS 247 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321 H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ ++ + ++YDQ HP Sbjct: 248 PHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQH----LADVYDQAHPRA 303 Query: 322 TQKD 325 +K+ Sbjct: 304 KKKE 307 >gi|85060322|ref|YP_456024.1| site-specific tyrosine recombinase XerC [Sodalis glossinidius str. 'morsitans'] gi|84780842|dbj|BAE75619.1| phage integrase [Sodalis glossinidius str. 'morsitans'] Length = 303 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 84/303 (27%), Positives = 149/303 (49%), Gaps = 25/303 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L +E LS T +SY+ RQ + E +T RQL +++RA ++ + Sbjct: 15 FLHYLRVELQLSAKTRESYQ---RQLYTVIVLIDEMGLT--EWRQLEVSQVRALAARSKR 69 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q + SL LS ++SFL +L + + + LP+ ++ + VD+ Sbjct: 70 QGLQSASLALRLSALRSFLDWLVSTDALGANPARGVSAPRHGRHLPKNMDVDE----VDH 125 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 +L + + + R+ A+L ++YG GLR++E + L ++ +R+ GKG+K R + Sbjct: 126 LLDIDTRDP--LALRDRAMLEVMYGAGLRLAELVGLNCADVDLGGGEVRVVGKGNKERKL 183 Query: 201 PLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 P+ + + + L P D +F G+ ++ Q+ + G+ Sbjct: 184 PIGATAVTWLTRWLTLRDRYAPKDD------AVFIANSGRRISARNVQKRFAEWGVKQGV 237 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 H LRHSFATH+L + G+LR++Q +LGH LSTTQIYT+++ ++ + +YD Sbjct: 238 NSHIHPHKLRHSFATHMLESSGNLRAVQELLGHANLSTTQIYTHLDFQH----LASVYDA 293 Query: 317 THP 319 HP Sbjct: 294 AHP 296 >gi|208779508|ref|ZP_03246853.1| phage integrase family protein [Francisella novicida FTG] gi|208744469|gb|EDZ90768.1| phage integrase family protein [Francisella novicida FTG] Length = 292 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 92/322 (28%), Positives = 160/322 (49%), Gaps = 45/322 (13%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 L+ N+L NL + S+ T+ +Y+ D Q + ++ + I L++++I + Sbjct: 4 LEHINNFLDNLLYLKNYSQETINNYQRDLLQL--------NQALSDKNIISLTHSDILIW 55 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 I K Q ++L+R LS ++SF +L +I +++ ++ K S LP+ +N + Sbjct: 56 IKKLHAQGNSPKTLQRKLSSVRSFFNFLINSEIVSQNPANGIKAPKDSKRLPKVVNTDEL 115 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 L+D ++ S++ I+AR+ A LLY CG+R+SE S+ + I Q +R+ GKG Sbjct: 116 AYLLD---VNPSND---IEARDIACFDLLYSCGIRLSELSSVELKYISISQKNIRVTGKG 169 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----------LFRGIRGKPLNPGVF 243 +K RIV Y+ NLN L LF GK L Sbjct: 170 NKQRIV------------YFGTKTLS-NLNRWLKIRDSLKPSSDYLFISRDGKHLTNRSI 216 Query: 244 QRYIRQL-RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 Q+ + ++Y + H LRHSFA+H+L + DL +++ +LGH +S+TQIYT++N Sbjct: 217 QKRLEIFAQKYASRHIH--PHMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLN 274 Query: 303 SKNGGDWMMEIYDQTHPSITQK 324 + + ++D+ HP +K Sbjct: 275 FQQ----LASVFDKAHPRAKKK 292 >gi|121728305|ref|ZP_01681336.1| tyrosine recombinase XerC [Vibrio cholerae V52] gi|153214849|ref|ZP_01949657.1| tyrosine recombinase XerC [Vibrio cholerae 1587] gi|153826279|ref|ZP_01978946.1| tyrosine recombinase XerC [Vibrio cholerae MZO-2] gi|254226604|ref|ZP_04920185.1| tyrosine recombinase XerC [Vibrio cholerae V51] gi|254291937|ref|ZP_04962718.1| tyrosine recombinase XerC [Vibrio cholerae AM-19226] gi|297581831|ref|ZP_06943752.1| tyrosine recombinase XerC [Vibrio cholerae RC385] gi|121629435|gb|EAX61864.1| tyrosine recombinase XerC [Vibrio cholerae V52] gi|124115092|gb|EAY33912.1| tyrosine recombinase XerC [Vibrio cholerae 1587] gi|125620876|gb|EAZ49229.1| tyrosine recombinase XerC [Vibrio cholerae V51] gi|149739947|gb|EDM54126.1| tyrosine recombinase XerC [Vibrio cholerae MZO-2] gi|150422147|gb|EDN14113.1| tyrosine recombinase XerC [Vibrio cholerae AM-19226] gi|297533925|gb|EFH72765.1| tyrosine recombinase XerC [Vibrio cholerae RC385] Length = 311 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 78/304 (25%), Positives = 154/304 (50%), Gaps = 16/304 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L E+GLS T ++Y+ +L ++ + QL +R + + + Q + Sbjct: 24 LHTEKGLSLYTQRNYKQQLETMTQYLV-----QVGLTHWTQLDSAWVRQLVMQGKRQGMK 78 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S+ LS ++SFL +L R + + +K +LP+ L+ + L++ Sbjct: 79 ASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRTLPKNLDVDEMAQLLEVT--- 135 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + + R+ AI+ L+YG GLR++E +S+ +++ + +R+ GKG+K R V Sbjct: 136 ---DDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVWFAG 192 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 ++ + ++ L L + + LF G ++ Q+ + + + + + H Sbjct: 193 QAQEWVGKWLKLRS-QLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISPHK 251 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ ++ + ++YDQ HP +K Sbjct: 252 LRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQH----LAQVYDQAHPRARKK 307 Query: 325 DKKN 328 +K + Sbjct: 308 NKDD 311 >gi|261879004|ref|ZP_06005431.1| integrase/recombinase XerD [Prevotella bergensis DSM 17361] gi|270334388|gb|EFA45174.1| integrase/recombinase XerD [Prevotella bergensis DSM 17361] Length = 306 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 85/292 (29%), Positives = 148/292 (50%), Gaps = 24/292 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +++ L+++R S TL +Y+ D + L FL K+ + + +++ F + Sbjct: 11 KRYIRYLKLQRSYSPNTLDAYQRDLNKLLDFL-----RKVDVAPF-DVKLEDLQQFAASL 64 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALNEKQALT 136 IG +S R LSG+++F ++L + +L +L K LP L + Sbjct: 65 HEHGIGSKSQARILSGVRAFYRFLVLDGYLEVDPTELLESPHLPKH--LPEYLTTDEVDM 122 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L D++ L T+ RN AI+ +L+ CGLR+SE +L ++ ++ +R+ GKG+K Sbjct: 123 LQDSIDLSTNE-----GHRNRAIIEVLFSCGLRVSELTNLKLSDLFLEEQFIRVMGKGNK 177 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLR 251 R+VP+ + + ++D D I P +F RG L + I++ Sbjct: 178 ERLVPISDRAIEELGYWFD----DRRQMIIKPGEEDYVFLNRRGHHLTRTMILIMIKRQA 233 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 G+ + + HTLRHSFAT LL G DLR IQ +LGH + TT++YT++++ Sbjct: 234 EAAGIKKTISPHTLRHSFATALLRGGADLRVIQDLLGHSNIGTTEMYTHLDN 285 >gi|258511365|ref|YP_003184799.1| integrase family protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478091|gb|ACV58410.1| integrase family protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 307 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 86/290 (29%), Positives = 140/290 (48%), Gaps = 19/290 (6%) Query: 31 LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90 S T++SY D F +L + + + LS ++R S + S+ R Sbjct: 20 FSPRTVRSYGQDLEAFRQWL-----DDRGVYDLDALSTRDVRMHASDLLAKGAAKSSVAR 74 Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150 LS +++FL++ +R + N+R K+ LPR L+E++ L+D+V Sbjct: 75 RLSCLRTFLRFCAERGWVRQVMAKNVRLPKRDRRLPRYLHEEEVAALIDHV-----GGDD 129 Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210 ++ R+ A+L LY G+R+SE + L ++ R+ GKG + R V + R+A+ Sbjct: 130 FVALRDRALLEFLYATGVRVSECVHLDIGDLDLSAGFARVLGKGGRERYVMV---GRRAV 186 Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQLRRYLGLPLSTTAHTLRHSF 269 P + +F RG L +R + R+++ GL S H LRHSF Sbjct: 187 DALRRYLPLRDRMARCSAVFINRRGGRLTDRSVRRVLERRIQEVPGLR-SIHVHGLRHSF 245 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 ATH+L+ G DLRS+Q +LGH LS+TQIYT+ + + + Y HP Sbjct: 246 ATHMLNGGADLRSVQELLGHASLSSTQIYTHTSREQ----LARAYYAAHP 291 >gi|119899508|ref|YP_934721.1| integrase/recombinase [Azoarcus sp. BH72] gi|119671921|emb|CAL95835.1| integrase/recombinase [Azoarcus sp. BH72] Length = 305 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 91/314 (28%), Positives = 151/314 (48%), Gaps = 22/314 (7%) Query: 10 VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69 +S E E + L +E GL+ T+ Y D QF +LA + I + + Sbjct: 8 LSAETRAELDLFCDALWLEFGLAANTIAGYRSDLAQFGAWLASRGTQLI------EADES 61 Query: 70 EIRAFISK--RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127 ++ A++++ RR + R L +S + F + L ++ + + + PR Sbjct: 62 QLTAYLAEFSRRAKPASQRRL---MSAWRRFYRGLLGQRRIAQDPTVQLDAPVTGERFPR 118 Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 L+E Q +L+ + T H R+ ++L LLY GLR+SE + L I + Sbjct: 119 TLSEAQVESLLAAPDVDTIH-----GLRDRSMLELLYASGLRVSELVELKLFAISTGEGV 173 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 +R+ GKG K R+VP + + Y + P L +F RG + +F R Sbjct: 174 IRVFGKGSKERLVPTGDIALEWLGRYLREARPALLRGRTCDEVFVSQRGAGMTRQMFWRI 233 Query: 247 IRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 I+Q G+P + HTLRH+FATHL+++G DLR +Q +LGH +STTQIYT+V + Sbjct: 234 IKQYAPKAGIPAQRISPHTLRHAFATHLINHGADLRVVQLLLGHADISTTQIYTHVARER 293 Query: 306 GGDWMMEIYDQTHP 319 + +++ + HP Sbjct: 294 ----LKQLHARHHP 303 >gi|228470279|ref|ZP_04055183.1| site-specific recombinase, phage integrase family/ribosomal subunit interface protein [Porphyromonas uenonis 60-3] gi|228308022|gb|EEK16897.1| site-specific recombinase, phage integrase family/ribosomal subunit interface protein [Porphyromonas uenonis 60-3] Length = 403 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 87/292 (29%), Positives = 146/292 (50%), Gaps = 12/292 (4%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFL-IFLAFYTEEKITIQTIRQLSYTEI 71 EL + +++ L +ER S LTL +Y ++ L T+E R L + Sbjct: 5 ELEQTLDAFMEYLRLERNASPLTLTTYRPAIESYMESALELATDEWRPSDADRDL----V 60 Query: 72 RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131 R +I ++ ++ ++ ++LS ++SF KYL+ R T + ++ K+ ++LP L + Sbjct: 61 RNWIMQQMDDELSSTTVNKNLSAVRSFYKYLQLRGHVTSNPTRYLKGPKREHTLPSFLTQ 120 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 Q + + + T + ++ R+ I+ +Y GLR +E SL Q + +LR+ Sbjct: 121 AQIEEALATIPIETDN---FLSVRDRLIIETIYQTGLRRAEVASLKTQQVDLTAMSLRVV 177 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG-VFQRYIRQL 250 GKG K RIVP +R+ + +Y L D + F + +PL+ V+Q + L Sbjct: 178 GKGRKERIVPFGTDLREKMQDYITLR--DQKVGTSQYFFVTLECRPLSGADVYQVVHKAL 235 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 GLP AHTLRHSFAT +L+ G + SI+ +LGH L TT YT+ + Sbjct: 236 SVVPGLP-RRGAHTLRHSFATEMLNAGAPITSIKELLGHSNLETTTRYTHTS 286 >gi|323342009|ref|ZP_08082242.1| integrase/recombinase XerD [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464434|gb|EFY09627.1| integrase/recombinase XerD [Erysipelothrix rhusiopathiae ATCC 19414] Length = 304 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 83/275 (30%), Positives = 135/275 (49%), Gaps = 16/275 (5%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 + LT+ SY D Q++ +L E ++ ++ + IR +I + +++ Sbjct: 19 AALTVASYRNDLNQYIEYL-----EHESVSSLESVDAEVIRKYIDDIKNDYAAS-TIQHK 72 Query: 92 LSGIKSFLKYL--KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 + I+ F +YL + + ++++N K LP +++ L + Sbjct: 73 IVVIRQFHQYLLNSGQLQHDPTAFVSLKN--KGTRLPTIVSDDTIRKLF------SFDRV 124 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 D + AIL LLY CGLR+SE + L + DQ LRI GKG+K R++PL Sbjct: 125 TGKDFMDYAILLLLYRCGLRVSECVHLEFSQVYLDQKWLRILGKGNKERMIPLSIDAIDG 184 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 + EY ++ + +F +GK ++ I+ + +G+ +AHTLRHSF Sbjct: 185 LSEYINIIRPQWMIQPTEQIFINAKGKGISRQYIDSMIKSRCKEMGILTPISAHTLRHSF 244 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 AT +L G DLR IQ +LGH +STTQIYT+VN K Sbjct: 245 ATAILDTGVDLRIIQELLGHQDISTTQIYTHVNKK 279 >gi|119896887|ref|YP_932100.1| site-specific recombinase [Azoarcus sp. BH72] gi|119669300|emb|CAL93213.1| site-specific recombinase [Azoarcus sp. BH72] Length = 303 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 87/307 (28%), Positives = 150/307 (48%), Gaps = 20/307 (6%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 L E + +L L +R + LTL++Y D + E + + L +IR Sbjct: 12 LTDECEAYLAYLGDQRRAAPLTLENYRRDLHRL--------ERLGDGRALMTLGAADIRR 63 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 F+++ + + RS+ R LS + ++L +R++ + + +R K LPRAL+ Q Sbjct: 64 FVARLHGEGLSGRSIARVLSCWRGLYRWLLRRRLIPANPVDGIRAPKSPRLLPRALSPDQ 123 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-QSTLRIQG 192 A L+D ++ R+ A+ L Y GLR+SE L +D + + + G Sbjct: 124 AQALLDPP------AEAALEVRDLAMFELFYSSGLRLSELAGLDVGGGLDPAEGMVTVLG 177 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 K K R VP+ A L+ +D + + LF G+ ++P + + + R Sbjct: 178 KRGKTRSVPVGAHA-WAALKAWDTVRAAIAPAAEPALFVTRSGRRMSPSAIRDRLARRAR 236 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 +GL + H LRHSFA+HLL + GDLR++Q +LGH + +TQ+YT+++ ++ + Sbjct: 237 SVGLGVHVHPHMLRHSFASHLLQSSGDLRAVQELLGHSSIRSTQVYTHLDFQH----LAR 292 Query: 313 IYDQTHP 319 IYD HP Sbjct: 293 IYDAAHP 299 >gi|300854312|ref|YP_003779296.1| putative integrase/recombinase XerD [Clostridium ljungdahlii DSM 13528] gi|300434427|gb|ADK14194.1| predicted integrase/recombinase XerD [Clostridium ljungdahlii DSM 13528] Length = 292 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 82/292 (28%), Positives = 151/292 (51%), Gaps = 15/292 (5%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87 ++ +SK T+ +Y D +F F+ K + + + I A++ + + S Sbjct: 14 KKHMSKNTMDAYVRDITRFYNFI------KDREENLENVEVVSIMAYVQYLQKEGRAISS 67 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 + R++ +++F KYL + + E+ +L + K + +P+ L ++ L++ L T+ Sbjct: 68 IVRNIVSLRNFYKYLMLKGVLNENPVLYYQIPKVEHKVPKILTIEEVDKLLEAPNLDTNK 127 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207 R+ A+L ++Y G+++ E LSLT +I S +R + ++ RIVP+ SV Sbjct: 128 -----GIRDKAMLEVMYAAGMKVMELLSLTIYDIDLKLSYVRCRSLKEEERIVPI-GSVA 181 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 L+ Y LN+ LF +RG ++ F + ++ + + + A TLRH Sbjct: 182 VKYLKNYLNIRHKLNIYNLDVLFLNLRGVQMSRQGFWKIVKYYAKEANIDKNINAFTLRH 241 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 SFA HLL NG D++S+Q +LGH LS TQIY++V +N + ++Y ++HP Sbjct: 242 SFAVHLLQNGADIKSVQELLGHKELSATQIYSSVIKRNK---IAQVYKKSHP 290 >gi|302338068|ref|YP_003803274.1| tyrosine recombinase XerD [Spirochaeta smaragdinae DSM 11293] gi|301635253|gb|ADK80680.1| tyrosine recombinase XerD [Spirochaeta smaragdinae DSM 11293] Length = 311 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 77/236 (32%), Positives = 124/236 (52%), Gaps = 15/236 (6%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 ++ + +S ++SF +L + ++ + K SLP L+ ++ ++ + L T Sbjct: 70 TIAKLVSIMRSFFDFLVSEEYRQDNPARMVDAPKLGRSLPSVLSIEEVEAFLNAIPLETP 129 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 R+ A+ L+Y GLR+SEA+ L+ ++ +R+ GKG K R++PL Sbjct: 130 E-----GLRDRALFELIYSAGLRVSEAVGLSAGSLYLRDGIIRVTGKGSKQRVIPLGDEA 184 Query: 207 RKAILEYY-DLCPF-DLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYLGLPLSTTAH 263 RK I Y D P + + LF RG PL+ V++R+ +Q G+ H Sbjct: 185 RKWIGRYLTDARPLLAKSFHPTDALFLSRRGTPLSRKNVWKRF-KQFSLLAGV--DGKVH 241 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 TLRHSFATHLL+ G DLRS+Q +LGH +STTQIYT+++ + ++Q HP Sbjct: 242 TLRHSFATHLLAGGADLRSVQELLGHSDISTTQIYTHIDDPT----LRNTHEQFHP 293 >gi|255311152|ref|ZP_05353722.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis 6276] gi|255317453|ref|ZP_05358699.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis 6276s] Length = 315 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 83/249 (33%), Positives = 122/249 (48%), Gaps = 9/249 (3%) Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 IR ++ ++ R+++R LS IKSF ++ K ++ E+ + +R + LP L Sbjct: 71 IRLYLLEQIQTHHSKRTVRRRLSAIKSFARFCVKNQLIPENPVEMIRGPRLPQELPSPLT 130 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 +Q L L+ L K R+ +L L Y GLRISE +L +I L I Sbjct: 131 YEQVLALMAAPEL-----DKVTGFRDRCLLELFYSSGLRISEITALNRADIDFQSHLLHI 185 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 +GKG K RIVP+ + + +Y + F GK L+ R +Q Sbjct: 186 RGKGKKERIVPMTKVAVQWLQDYLNHPDRASVEQDHQACFLNRFGKRLSTRSIDRKFQQY 245 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 GL S T HT+RH+ ATH L G DL++IQ +LGH L TT IYT+V+ K Sbjct: 246 LLKTGLSGSITPHTIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMK----LK 301 Query: 311 MEIYDQTHP 319 +I+D+THP Sbjct: 302 KQIHDETHP 310 >gi|126663343|ref|ZP_01734341.1| integrase [Flavobacteria bacterium BAL38] gi|126625001|gb|EAZ95691.1| integrase [Flavobacteria bacterium BAL38] Length = 295 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 86/295 (29%), Positives = 147/295 (49%), Gaps = 20/295 (6%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLSYTEIRAFISKRRTQKIGD 85 E+ S LT+++Y D + F +E + Q+I ++ Y IR +I I Sbjct: 15 EKNYSPLTVRAYLDDIQSF--------QEYLLGQSISLEEVVYPNIRNWIVTLVEHNIST 66 Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 S+ R +S +KS+ K+L K K + + +L ++LK + + +EK+ L +V Sbjct: 67 TSVNRKISALKSYYKFLLKVKQISVNPLLKHKSLKTAKKVQIPFSEKELL----DVFSEN 122 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 + + RN I+ L Y G+R +E ++L ++ + Q T+R+ GK +K RI+P+L Sbjct: 123 EYADDFEGIRNRFIIELFYTTGIRRAELINLNLNSVSEIQKTIRVIGKRNKERIIPVLDC 182 Query: 206 VRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 +Y L +L + ++ L G ++ R I + + H Sbjct: 183 TLNLYKKYKSLRNGLELISDNEM-LILSKTGNKVSESFVYRLINDYFSTVSKKEKKSPHV 241 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LRHSFATHLL+NG DL S++ +LGH LS+TQIYT+ + + ++Y + HP Sbjct: 242 LRHSFATHLLNNGADLNSVKELLGHASLSSTQIYTH----SSLAELKKVYQEAHP 292 >gi|148258743|ref|YP_001243328.1| tyrosine recombinase XerD subunit [Bradyrhizobium sp. BTAi1] gi|146410916|gb|ABQ39422.1| tyrosine recombinase XerD subunit [Bradyrhizobium sp. BTAi1] Length = 308 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 90/303 (29%), Positives = 141/303 (46%), Gaps = 38/303 (12%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L + E+G + TL +Y D FLA T T +R +++ T Sbjct: 4 FLDMMAAEQGAGQNTLDAYRRDLSDLSEFLAGKANSFTTADT------QALRDYLADLDT 57 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + S+ R LS ++ ++L I ++ + K+ LP+ L+ + VD Sbjct: 58 RGFKSSSVARRLSAMRHLFRFLLSEHIRSDDPAAILSGPKRGRPLPKVLS----IGDVDR 113 Query: 141 VLLHTSHETKWIDA---------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 +L T+ DA R +L +LY GLR+SE ++L D + ++ Sbjct: 114 MLTRAKELTETADASPAQRLRALRLYCLLEVLYATGLRVSELVALPRTAARHDARMIVVR 173 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGV------- 242 GKG+K R+VPL + R+A+ +Y L+ P + GK L P Sbjct: 174 GKGNKERLVPLNQASRQAMADYL------AALDALKPEKKASATFGKWLFPSFGESGHLT 227 Query: 243 ---FQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 F R +++L GLP + H LRH+FA+HLL NG DLR +Q++LGH +STTQIY Sbjct: 228 RQHFARDLKELAVASGLPARLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIY 287 Query: 299 TNV 301 T+V Sbjct: 288 THV 290 >gi|217975041|ref|YP_002359792.1| tyrosine recombinase XerC [Shewanella baltica OS223] gi|217500176|gb|ACK48369.1| tyrosine recombinase XerC [Shewanella baltica OS223] Length = 306 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 88/316 (27%), Positives = 153/316 (48%), Gaps = 33/316 (10%) Query: 21 WLQNLE----IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 WLQ E ER LS T+++Y + + L E + + + + + ++ +S Sbjct: 15 WLQTFERYLSTERQLSAHTVRNYLYELNRGSDLLP----EGVHLLNVSREHWQQV---LS 67 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 K + + RSL LS +K + ++L + + + + K++ LP+ ++ Sbjct: 68 KLHRKGLSPRSLSLCLSAVKQWGEFLLREGVIELNPAKGLSAPKQAKPLPKNIDVDAISH 127 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L+D T + R+ A++ L Y GLR++E +L ++ D +R+ GKG+K Sbjct: 128 LLD------IEGTDPLSLRDKAMMELFYSSGLRLAELAALNLSSVQYDLKEVRVLGKGNK 181 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLR 251 RIVP+ A+L + LN Q+P LF +GK L+ Q + + Sbjct: 182 ERIVPVGRLAIAALLNW-------LNCRKQIPCEDNALFVTEKGKRLSHRSIQARMAKWG 234 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 + L + H LRHSFATH+L DLR++Q +LGH L+TTQIYT+++ ++ + Sbjct: 235 QEQALSVRVHPHKLRHSFATHMLEASADLRAVQELLGHANLATTQIYTSLDFQH----LA 290 Query: 312 EIYDQTHPSITQKDKK 327 ++YD HP + K Sbjct: 291 KVYDNAHPRAKKTQDK 306 >gi|308050773|ref|YP_003914339.1| tyrosine recombinase XerD [Ferrimonas balearica DSM 9799] gi|307632963|gb|ADN77265.1| tyrosine recombinase XerD [Ferrimonas balearica DSM 9799] Length = 295 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 96/303 (31%), Positives = 149/303 (49%), Gaps = 18/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + +L +RGLS TL +Y D +F FL+ E+ T + + +IR +++ R Sbjct: 8 ERFCDDLWAQRGLSDNTLAAYRSDLCRFAEFLS----ERDT--PLARADSLDIRDYLAHR 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 ++ S RSLS ++ F L +R + + K LP +L+E + L+ Sbjct: 62 KSIGAAKTSTARSLSALRRFFADLVRRGEREADPMALIAQPKMDRKLPDSLSEAEVEALL 121 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D I R+ A+L LLY GLR+SE L + + Q +R+ GKG K R Sbjct: 122 D-----APECDDPIQLRDKAMLELLYATGLRVSELTGLQMEQVSLRQGVVRVVGKGGKER 176 Query: 199 IVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VP+ + LE Y + L +N LF RG + F ++ + G+ Sbjct: 177 LVPMGEQAQHQ-LEVYLREARGMLLGVNRSDVLFPSKRGVQMTRQTFWHRVKFYAQQSGI 235 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + E++ + Sbjct: 236 TKPLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQAR----LTELHRE 291 Query: 317 THP 319 HP Sbjct: 292 HHP 294 >gi|269123142|ref|YP_003305719.1| integrase family protein [Streptobacillus moniliformis DSM 12112] gi|268314468|gb|ACZ00842.1| integrase family protein [Streptobacillus moniliformis DSM 12112] Length = 287 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 85/287 (29%), Positives = 144/287 (50%), Gaps = 23/287 (8%) Query: 17 ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 E ++L L+ E+G + T++SY D YT K + + ++ +I +I Sbjct: 3 EVNSFLDYLKFEKGNADKTIESYRND---------LYTFFKKVNKKVVDITSDDIYQYIE 53 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 K + +K ++ R +S IKSF K+ KI + NLKK LP AL ++ Sbjct: 54 KLK-EKYTYNTVIRKISSIKSFFKFCYIEKIIKNDPANKIHNLKKEKRLPNAL----SVE 108 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGKGD 195 +++++ +HE ++ RN I+ L G RISE ++L ++I + D ++ GKG Sbjct: 109 EINSIIQSFNHEP--VNRRNQLIVKFLVATGARISEVINLEIKDIENSDFEFAKLYGKGS 166 Query: 196 KIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 K R VP+ + K I EY ++ P LF GIR + F + + + + + Sbjct: 167 KYRFVPIYLELEKEIKEYIREIRPKIKGSEKSYLLFPGIRREN-----FWKILNKHAQNV 221 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G+ H RHS AT ++ NG D+R +Q +LGH ++TT++YT+V Sbjct: 222 GIEKKIHPHLFRHSTATMMIENGADIRIVQELLGHASITTTEVYTHV 268 >gi|111224556|ref|YP_715350.1| site-specific tyrosine recombinase [Frankia alni ACN14a] gi|111152088|emb|CAJ63815.1| site-specific tyrosine recombinase (partial match) [Frankia alni ACN14a] Length = 349 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 92/327 (28%), Positives = 146/327 (44%), Gaps = 41/327 (12%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +LE ERGL++ ++ +Y D R++L L+ + ++ + E+ F + R Sbjct: 15 YLHHLEGERGLAQNSVLAYRRDLRRYLNHLSAQG-----LCSLDAVGEAEVAGFAAALR- 68 Query: 81 QKIGDR--------SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 +GD S+ R L ++S ++ + +E +R LP+AL+ Sbjct: 69 --LGDETHPPLAAASVARMLVAVRSLHRFAAEEGDVSEDVSRPVRPPTPPRKLPKALSVD 126 Query: 133 QALTLVDNVLLHTSHETKWIDARN-------------------SAILYLLYGCGLRISEA 173 Q ++ + R +A+L LLYG G RISEA Sbjct: 127 QVTAVLAAAAGTPRAGVAGVAGRAEDLAAAPVEPAEAVRRLRATALLELLYGTGARISEA 186 Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRG 232 + L ++ + + +R+ GKG + RIVPL A+ +Y L P +F Sbjct: 187 VGLDVDDLDLESAAVRLHGKGGRDRIVPLGRCAVAALGDYLRLGRPSLAGPRSGAAVFLS 246 Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 RG L+ +R G+ + H LRHSFATHLL G D+R +Q +LGH + Sbjct: 247 RRGNRLSRQSAWTVLRTAADQAGVD-GVSPHVLRHSFATHLLDGGADVRVVQELLGHASV 305 Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHP 319 STTQIYT V D + E+Y +HP Sbjct: 306 STTQIYTLVTV----DRLREVYATSHP 328 >gi|91205817|ref|YP_538172.1| site-specific tyrosine recombinase XerD [Rickettsia bellii RML369-C] gi|123084556|sp|Q1RHT1|XERD_RICBR RecName: Full=Tyrosine recombinase xerD gi|91069361|gb|ABE05083.1| Tyrosine recombinase XerD [Rickettsia bellii RML369-C] Length = 305 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 93/296 (31%), Positives = 150/296 (50%), Gaps = 25/296 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ L ER LSK ++ SY+ D F +LA ++ I T IR ++ Sbjct: 7 FLEMLLAERALSKNSILSYKRDLLDFHNYLAKQKLSELNITT------DNIRNWVEYLAE 60 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS+ R +S IKS+ ++L T + +LN+ K N LP L ++ + + Sbjct: 61 NSLQARSINRKISTIKSYYEFLISENHTNLNPLLNIDLPKYQNKLPEIL----SIDDIKS 116 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------GKG 194 +L + S + AR +A+++LLY GLR+SE +SL +I+ ++ + ++ GKG Sbjct: 117 LLEYCSQDISPEGARLNAMIHLLYASGLRVSELVSLKLSDILSNKVSREVKKIFSVLGKG 176 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LF-RGIRGKPLNPGVFQRYIR 248 +K RI+ + ++++Y L D +N P LF + F ++ Sbjct: 177 NKERIIVINEPAINSLVKY--LVVRDNFVNKTKPKNLIYLFPSSAAAGYMTRQNFAILLK 234 Query: 249 QLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 Y GL P + H LRHSFA+HLL G DLR IQ +LGH +STTQIYT++ + Sbjct: 235 SAALYAGLNPEHISPHVLRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQT 290 >gi|15640159|ref|NP_229786.1| site-specific tyrosine recombinase XerC [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587730|ref|ZP_01677491.1| tyrosine recombinase XerC [Vibrio cholerae 2740-80] gi|147673673|ref|YP_001218291.1| site-specific tyrosine recombinase XerC [Vibrio cholerae O395] gi|153818950|ref|ZP_01971617.1| tyrosine recombinase XerC [Vibrio cholerae NCTC 8457] gi|153822328|ref|ZP_01974995.1| tyrosine recombinase XerC [Vibrio cholerae B33] gi|227080364|ref|YP_002808915.1| integrase/recombinase XerC [Vibrio cholerae M66-2] gi|229508406|ref|ZP_04397910.1| tyrosine recombinase XerC [Vibrio cholerae BX 330286] gi|229508913|ref|ZP_04398403.1| tyrosine recombinase XerC [Vibrio cholerae B33] gi|229517027|ref|ZP_04406473.1| tyrosine recombinase XerC [Vibrio cholerae RC9] gi|229606679|ref|YP_002877327.1| site-specific tyrosine recombinase XerC [Vibrio cholerae MJ-1236] gi|254851512|ref|ZP_05240862.1| tyrosine recombinase xerC [Vibrio cholerae MO10] gi|255743919|ref|ZP_05417874.1| tyrosine recombinase XerC [Vibrio cholera CIRS 101] gi|262151158|ref|ZP_06028297.1| tyrosine recombinase XerC [Vibrio cholerae INDRE 91/1] gi|262167027|ref|ZP_06034744.1| tyrosine recombinase XerC [Vibrio cholerae RC27] gi|298501104|ref|ZP_07010904.1| tyrosine recombinase XerC [Vibrio cholerae MAK 757] gi|34223078|sp|Q9KVL4|XERC_VIBCH RecName: Full=Tyrosine recombinase xerC gi|172047518|sp|A5F4I4|XERC_VIBC3 RecName: Full=Tyrosine recombinase xerC gi|254799360|sp|C3LPX0|XERC_VIBCM RecName: Full=Tyrosine recombinase xerC gi|9654528|gb|AAF93305.1| integrase/recombinase XerC [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548029|gb|EAX58107.1| tyrosine recombinase XerC [Vibrio cholerae 2740-80] gi|126510512|gb|EAZ73106.1| tyrosine recombinase XerC [Vibrio cholerae NCTC 8457] gi|126520154|gb|EAZ77377.1| tyrosine recombinase XerC [Vibrio cholerae B33] gi|146315556|gb|ABQ20095.1| tyrosine recombinase XerC [Vibrio cholerae O395] gi|227008252|gb|ACP04464.1| integrase/recombinase XerC [Vibrio cholerae M66-2] gi|227011870|gb|ACP08080.1| integrase/recombinase XerC [Vibrio cholerae O395] gi|229346090|gb|EEO11062.1| tyrosine recombinase XerC [Vibrio cholerae RC9] gi|229354030|gb|EEO18963.1| tyrosine recombinase XerC [Vibrio cholerae B33] gi|229354679|gb|EEO19601.1| tyrosine recombinase XerC [Vibrio cholerae BX 330286] gi|229369334|gb|ACQ59757.1| tyrosine recombinase XerC [Vibrio cholerae MJ-1236] gi|254847217|gb|EET25631.1| tyrosine recombinase xerC [Vibrio cholerae MO10] gi|255738402|gb|EET93792.1| tyrosine recombinase XerC [Vibrio cholera CIRS 101] gi|262024545|gb|EEY43229.1| tyrosine recombinase XerC [Vibrio cholerae RC27] gi|262031052|gb|EEY49677.1| tyrosine recombinase XerC [Vibrio cholerae INDRE 91/1] gi|297540138|gb|EFH76199.1| tyrosine recombinase XerC [Vibrio cholerae MAK 757] Length = 311 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 78/304 (25%), Positives = 154/304 (50%), Gaps = 16/304 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L E+GLS T ++Y+ +L ++ + QL +R + + + Q + Sbjct: 24 LHTEKGLSLYTQRNYKQQLETMTQYLV-----QVGLTHWTQLDSAWVRQLVMQGKRQGMK 78 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S+ LS ++SFL +L R + + +K +LP+ L+ + L++ Sbjct: 79 ASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRTLPKNLDVDEMAQLLEVT--- 135 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + + R+ AI+ L+YG GLR++E +S+ +++ + +R+ GKG+K R V Sbjct: 136 ---DDDPLSIRDRAIMELMYGAGLRLAELVSIDIKDVNLSEGEIRVIGKGNKERKVWFAG 192 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 ++ + ++ L L + + LF G ++ Q+ + + + + + H Sbjct: 193 QAQEWVGKWLKLRS-QLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISPHK 251 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ ++ + ++YDQ HP +K Sbjct: 252 LRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQH----LAQVYDQAHPRARKK 307 Query: 325 DKKN 328 +K + Sbjct: 308 NKDD 311 >gi|260433976|ref|ZP_05787947.1| tyrosine recombinase XerD [Silicibacter lacuscaerulensis ITI-1157] gi|260417804|gb|EEX11063.1| tyrosine recombinase XerD [Silicibacter lacuscaerulensis ITI-1157] Length = 316 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 100/335 (29%), Positives = 154/335 (45%), Gaps = 43/335 (12%) Query: 1 MEGNNLPE--IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI 58 M G PE I +F L+ E G + TL +Y D + F +L+ + Sbjct: 1 MPGPETPELWISAF---------LEAQAAELGAATNTLLAYGRDLKDFAGWLSRHG---- 47 Query: 59 TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118 Q I A++ Q + + R LS IK ++ + + + ++ Sbjct: 48 --AGFAQADQARIEAYLIDCDAQGLSRATRARRLSAIKQLYRFAFEEGWRDTNPAIQIKG 105 Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA---RNSAILYLLYGCGLRISEALS 175 + LP+ L+ + VD LL + +T A RN+ ++ LLY G+R++E +S Sbjct: 106 PGRQKRLPKTLDVAE----VDR-LLQAARQTGRTQADRLRNTCLMELLYATGMRVTELVS 160 Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235 L D L + GKG K R+VPL P R A+ + L D + G R Sbjct: 161 LPVSAARGDPRMLLVLGKGGKERMVPLSPPARDALAAW--LGARDAVEEASVAKG-GQRS 217 Query: 236 KPLNP-----GVFQRY-----IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQ 284 + L P G R+ +++L G+ P T HTLRH+FATHLL+NG DLRSIQ Sbjct: 218 RFLFPSRGKSGHLTRHRFFLLVKELAVCGGVSPEKVTPHTLRHAFATHLLANGADLRSIQ 277 Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 ++LGH ++TT+IYT+V + + E+ Q HP Sbjct: 278 TLLGHADVATTEIYTHVLDER----LSELVLQHHP 308 >gi|323359719|ref|YP_004226115.1| integrase [Microbacterium testaceum StLB037] gi|323276090|dbj|BAJ76235.1| integrase [Microbacterium testaceum StLB037] Length = 301 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 87/307 (28%), Positives = 141/307 (45%), Gaps = 21/307 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L +L R LS T+++Y D +++ I+ +RQ + A +K Sbjct: 8 EAFLTHLATVRRLSPATVRAYRSDLADLARSTGDAPLDELDIEALRQWQWEATSAGRAKA 67 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S ++FL + ++ + + K+ +LP ++ Sbjct: 68 TAAR--------RTSAARAFLSWAREEGLIEVDPSPRLVAPKRGRTLPVVATTSALDEVL 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 H + + + R+ AIL +LYG G R+SE L ++ + TLR++GKGD+ R Sbjct: 120 AGAAAH-AESGEPVALRDHAILEVLYGSGARVSELCGLDLDDVDRESRTLRVRGKGDRER 178 Query: 199 IVPL-LPSVRKAILEYYDLCPFDL----NLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRR 252 +VP +P+ R LE Y + + + P +F G RG L P + ++ Sbjct: 179 VVPYGVPAARA--LEAYVVRGRPVLSARGDGVAGPAVFLGARGARLGPRAVHALVSRVVA 236 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 + + H LRHS ATHLL G DLRS+Q ILGH L TTQIYT+V+ G+ + E Sbjct: 237 PVVGAETLGPHALRHSAATHLLDGGADLRSVQEILGHASLGTTQIYTHVS----GERLRE 292 Query: 313 IYDQTHP 319 Y HP Sbjct: 293 AYRLAHP 299 >gi|304394166|ref|ZP_07376089.1| tyrosine recombinase XerD [Ahrensia sp. R2A130] gi|303293606|gb|EFL87983.1| tyrosine recombinase XerD [Ahrensia sp. R2A130] Length = 308 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 87/309 (28%), Positives = 143/309 (46%), Gaps = 21/309 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE-KITIQTIRQLSYTEIRAFISK 77 +++L+ + ERG + TL Y D LA Y+ + T T+ +R ++++ Sbjct: 8 ESFLEMMSAERGAAANTLSGYGRD-------LADYSAHCRNTRTTVMDAGAEHVRGWMAR 60 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 + R LS ++ ++L + + + K LP+ ++E L Sbjct: 61 LADSGCAASTQARKLSAVRQLYRFLFSDGLREDDPTATVDRPKTGRPLPKVISEIDVDRL 120 Query: 138 V----DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 + D + + AR A+L LLY GLR+SE ++L I + + GK Sbjct: 121 LGAAQDAARKGETSAARLRAARTLALLELLYASGLRVSELVALRSATITPQTRFVNVTGK 180 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF--RGIRGKPLNPGVFQRYIRQLR 251 G K R+VP+ + +A+ E Y D LF R G + F R ++ L Sbjct: 181 GAKERLVPISAAALEAV-EAYRQAARDHKQAPSAWLFPSRSAAGH-ITRQHFARDLKALA 238 Query: 252 RYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 GLP S + H LRH+FA+HLL NG DLR++Q +LGH ++TTQIYT+V + + Sbjct: 239 TSAGLPASKLSPHVLRHAFASHLLQNGADLRAVQQLLGHADIATTQIYTHVLEER----L 294 Query: 311 MEIYDQTHP 319 ++ + HP Sbjct: 295 RDLVETAHP 303 >gi|78049232|ref|YP_365407.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037662|emb|CAJ25407.1| integrase-recombinase XerD [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 323 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 92/309 (29%), Positives = 150/309 (48%), Gaps = 23/309 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L E+G+++ TL+SY D L LA + + + + + ++ R Sbjct: 28 ERFLDRFWAEQGVARQTLESYRRD----LEGLARWRDG--AHGGLLGIDRAALFDYLRWR 81 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 RS R LS +++F + + ++ + + SLP+AL E Q + Sbjct: 82 TQANYSPRSTARLLSTLRAFYGLCLRDGVRSDDPTTLIDPPQLPRSLPKALTESQ----I 137 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + +L +T RN A+L L+Y GLR+SE ++L + Q LR+ GKG K R Sbjct: 138 EALLAAPDVDTP-AGLRNRAMLELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDR 196 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNI-------QLPLFRGIRGKPLNPGVFQRYIRQLR 251 +VPL + + Y L N Q+PLF +PL+ F +++ Sbjct: 197 LVPLGEESQHWLERYLREARPLLAANKPVAAVDGQVPLFIDAARRPLSRQQFWALVKRYA 256 Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ P + + H LRHSFATHLL++G DLR++Q +LGH LSTTQIYT V ++ + Sbjct: 257 AVAGIDPDTVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQH----L 312 Query: 311 MEIYDQTHP 319 +++ HP Sbjct: 313 QKLHASHHP 321 >gi|146277571|ref|YP_001167730.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] gi|145555812|gb|ABP70425.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] Length = 311 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 85/289 (29%), Positives = 137/289 (47%), Gaps = 16/289 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ E ++ T +Y D + F +LA +EE T + A++ Sbjct: 13 FLEAQAAELDAARNTRLAYGRDLKDFAGWLARRSEEFATADR------AAVEAYLVFCDA 66 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q + + R LS I+ ++ + ++ + +R ++ LP+ L ++ L+D Sbjct: 67 QGLSPATRARRLSSIRQLYRFAHEEGWRADNPAIRLRGPGRARRLPKTLEIEEVDRLLDA 126 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + RN +L LLY G+R+SE + L + + ++GKG K R+V Sbjct: 127 ARDKGRRAADQV--RNRCLLELLYATGMRVSEMVGLPVAAARGNPQMILVRGKGGKERMV 184 Query: 201 PLLPSVRKAILEYY---DLCPFDLNLNIQLP---LFRGIRGKP-LNPGVFQRYIRQLRRY 253 PL P R+A+ ++ D ++P LF G L F I+Q+ Sbjct: 185 PLSPPAREALADWLRVRDEAEAAGQKAGRVPSRFLFPGSGAAGHLTREYFYVLIKQIAVL 244 Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G+ P T HTLRH+FATHLL+ G DLR IQ++LGH LSTT+IYT+V Sbjct: 245 AGVDPSKVTPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHV 293 >gi|113866617|ref|YP_725106.1| site-specific tyrosine recombinase XerD [Ralstonia eutropha H16] gi|113525393|emb|CAJ91738.1| Site-specific recombinase XerD [Ralstonia eutropha H16] Length = 312 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 91/297 (30%), Positives = 143/297 (48%), Gaps = 17/297 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E GLS+ T+ +Y R+ L LA + + + + + + A+ + R TQ Sbjct: 29 LWLEDGLSRNTIDAY----RRDLTLLARWLQHEHRGE-LPGADDGALSAYFNARHTQSRA 83 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S R L+ + F ++ + + L +R K+ P+ L E Q VD +L Sbjct: 84 S-SANRRLAVFRRFYQWALREHLVEADPCLLLRPAKQPPRYPKTLTESQ----VDALLEA 138 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLL 203 +T + R+ +L L+Y GLR+SE + I ++ R+ GKGDK R+VP Sbjct: 139 PDTDTP-LGLRDRTMLELMYASGLRVSELTQMKTIEIGLNEGVARVVGGKGDKERLVPFG 197 Query: 204 PSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 + Y P L LF RG+ + F I++ R G+ + Sbjct: 198 QQAGDWLRRYLASARPALLAGRACDALFVTQRGEGMTRQAFWHLIKRHARDAGVHAPLSP 257 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V + + E++ Q HP Sbjct: 258 HTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARER----LRELHQQHHP 310 >gi|78484996|ref|YP_390921.1| tyrosine recombinase XerD [Thiomicrospira crunogena XCL-2] gi|78363282|gb|ABB41247.1| tyrosine recombinase XerD subunit [Thiomicrospira crunogena XCL-2] Length = 297 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 87/308 (28%), Positives = 148/308 (48%), Gaps = 19/308 (6%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 L E +++Q L + GLS TLQ+Y+ D ++ T+ + + Q S ++ Sbjct: 5 LTPEITDFIQYLRLNEGLSDNTLQAYQRDLKK--------TQLALGKTDLSQASREQLED 56 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 ++ + ++ S+ R LS +K F +L + ++ + +P ++E Q Sbjct: 57 YLFQLHVDQVNPSSIARCLSALKRFYLFLILHNRIQQDPAAQLKAPQLIKKIPSVISEAQ 116 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 LL+ T + R+ AIL L+Y GLR+SE ++L + + +++ GK Sbjct: 117 V-----EALLNAPDLTTPLGVRDKAILELMYASGLRVSELVNLPYEQLNLSAGLVQVTGK 171 Query: 194 GDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLR 251 G+K RIVP+ +AI Y P + + LF G+ + I+ L Sbjct: 172 GNKERIVPIGQMAIEAIEAYLKSARPALVGKQKWVSTLFVSRIGRTMTRQTLWHRIKNLA 231 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 + + H LRH+FATHL+++G DLR++Q +LGH LSTTQIYT+V + + Sbjct: 232 LQADIRSQLSPHGLRHAFATHLINHGADLRTVQLLLGHSDLSTTQIYTHV----AKERLQ 287 Query: 312 EIYDQTHP 319 I+ Q HP Sbjct: 288 SIHHQHHP 295 >gi|319955952|ref|YP_004167215.1| integrase family protein [Nitratifractor salsuginis DSM 16511] gi|319418356|gb|ADV45466.1| integrase family protein [Nitratifractor salsuginis DSM 16511] Length = 284 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 93/295 (31%), Positives = 142/295 (48%), Gaps = 45/295 (15%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 RG S+ T+ +YE RQ L + E K I I L +RR R++ Sbjct: 16 RGYSERTVATYELPLRQMLQYHRLKREGKQLILDIMPL----------RRRIASNTPRTV 65 Query: 89 KRSLSGIKSFLKYLKKRK---ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 + LS ++SF++YL+ ++ I E + ++K +LP+ + E+ +++ Sbjct: 66 AKKLSAVRSFVRYLQDQRNLSILLEGD----ESVKVPRTLPKPIEERYIREVLEAA---- 117 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 D IL LLYG GLRISE L + I D+ +RI GKG K R +PL + Sbjct: 118 -------DPTERLILGLLYGMGLRISELAGLRREQI--DREWIRIHGKGGKTRQLPLPQA 168 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 V + + Y L P + L F +GK PL+ + +++L R G+ T H Sbjct: 169 VLQMLDHYLALHPAGVYL------FE--KGKAPLSAAQIRYRVQKLFRSRGI--KATPHQ 218 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LRHSFATHLL +G + + +LGH ++TTQIYT + S + Y + HP Sbjct: 219 LRHSFATHLLDHGARISDVSELLGHASMATTQIYTQLGSSR----KLREYMKAHP 269 >gi|153803069|ref|ZP_01957655.1| tyrosine recombinase XerC [Vibrio cholerae MZO-3] gi|124121388|gb|EAY40131.1| tyrosine recombinase XerC [Vibrio cholerae MZO-3] Length = 312 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 78/304 (25%), Positives = 154/304 (50%), Gaps = 16/304 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L E+GLS T ++Y+ +L ++ + QL +R + + + Q + Sbjct: 24 LHTEKGLSLYTQRNYKQQLETMTQYLV-----QVGLTHWTQLDSAWVRQLVMQGKRQGMK 78 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S+ LS ++SFL +L R + + +K +LP+ L+ + L++ Sbjct: 79 ASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRTLPKNLDVDEMAQLLEVT--- 135 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + + R+ AI+ L+YG GLR++E +S+ +++ + +R+ GKG+K R V Sbjct: 136 ---DDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVWFAG 192 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 ++ + ++ L L + + LF G ++ Q+ + + + + + H Sbjct: 193 QAQEWVGKWLKLRS-QLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISPHK 251 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ ++ + ++YDQ HP +K Sbjct: 252 LRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQH----LAKVYDQAHPRARKK 307 Query: 325 DKKN 328 + K+ Sbjct: 308 NNKD 311 >gi|77165718|ref|YP_344243.1| tyrosine recombinase XerD [Nitrosococcus oceani ATCC 19707] gi|254433312|ref|ZP_05046820.1| tyrosine recombinase XerD [Nitrosococcus oceani AFC27] gi|76884032|gb|ABA58713.1| Tyrosine recombinase XerD [Nitrosococcus oceani ATCC 19707] gi|207089645|gb|EDZ66916.1| tyrosine recombinase XerD [Nitrosococcus oceani AFC27] Length = 305 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 92/302 (30%), Positives = 152/302 (50%), Gaps = 16/302 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +E GL++ TL +Y D +F +L +++ + I R+ ++ A+++ R Sbjct: 17 ERFLNALWLEEGLAENTLAAYRRDLERFSRWL--HSQGRTLIGAQRE----DLLAYLAHR 70 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 RS+ RS+S ++ F +YL KI + + + LP +L+E++ Sbjct: 71 LEGGDKSRSVARSVSSLRRFYRYLMGEKIRDNDPSDRVESPRLGRLLPESLSEEEV---- 126 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL + R+ +L LY GLR+SE ++LT + Q + + GKG+K R Sbjct: 127 -EALLAAPKTEDSLGLRDRTMLETLYATGLRVSELVNLTLPQLNPRQGVVYLSGKGNKER 185 Query: 199 IVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL + Y L + LF RG ++ F I++ R G+ Sbjct: 186 LVPLGEVALSWLDRYCREARLGLVRSQVNEILFLTRRGGAMSRQAFWYLIKRYARQSGIQ 245 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + +++ Q Sbjct: 246 KALSPHTLRHAFATHLLNHGADLRVVQILLGHADLSTTQIYTHVARAR----LQQLHQQH 301 Query: 318 HP 319 HP Sbjct: 302 HP 303 >gi|156935864|ref|YP_001439780.1| site-specific tyrosine recombinase XerC [Cronobacter sakazakii ATCC BAA-894] gi|156534118|gb|ABU78944.1| hypothetical protein ESA_03747 [Cronobacter sakazakii ATCC BAA-894] Length = 301 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 86/298 (28%), Positives = 144/298 (48%), Gaps = 17/298 (5%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L+ L++ER LS +TL +YE RQ + E +++ Q +R+ + R Sbjct: 14 LRYLKVERQLSPVTLLNYE---RQLTAIVGLAGEA--GLKSWAQCDAAMVRSLAVRSRRA 68 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 +G SL LS ++SF + + + + K LP+ ++ L+D Sbjct: 69 GLGPSSLALRLSALRSFFDWQVSQGELKANPAKGVSTPKTPRHLPKNIDVDDVNRLLDID 128 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 L + R+ A+L ++YG GLR+SE +++ ++ + + GKG K R +P Sbjct: 129 L------NDPLAVRDRAMLEIMYGAGLRLSELVNIDCNHLDLTSGEVWVMGKGSKERRLP 182 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 + S I + +L +L LF +GK ++ Q+ + GL Sbjct: 183 IGRSAVAWIEHWLNL--RELFGPDDDALFLSKQGKRISARNVQKRFAEWGIKQGLNSHVH 240 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHSFATH+L + GDLR++Q +LGH LSTTQIYT+++ ++ + +YD HP Sbjct: 241 PHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHP 294 >gi|78067360|ref|YP_370129.1| site-specific tyrosine recombinase XerD [Burkholderia sp. 383] gi|77968105|gb|ABB09485.1| Tyrosine recombinase XerD [Burkholderia sp. 383] Length = 316 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 140/297 (47%), Gaps = 19/297 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E GL++ TL +Y D F +LA + + + + +I+ R K Sbjct: 35 LWLEHGLARNTLDAYRRDLVLFSQWLAETHDAPLD-----SVDEAMVTGYIAARSDGKA- 88 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S R LS + + + + + L + + K++ P L+E Q L+ + Sbjct: 89 -TSSNRRLSVFRRYYGWAVREHRVSADPTLRITSAKQAARFPSTLSEAQVEALLGAPDIG 147 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 T + R+ +L L+Y GLR+SE + L + ++ +R+ GKG K R+VP Sbjct: 148 TP-----LGLRDRTMLELMYASGLRVSELVMLKTVEVGLNEGVVRVMGKGSKERLVPF-G 201 Query: 205 SVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 V +E Y D P L LF RG + F I++ ++ + + Sbjct: 202 EVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQHAEVRAHLSP 261 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V + + ++ Q HP Sbjct: 262 HTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARER----LKTLHAQHHP 314 >gi|120436726|ref|YP_862412.1| tyrosine recombinase XerC [Gramella forsetii KT0803] gi|117578876|emb|CAL67345.1| tyrosine recombinase XerC [Gramella forsetii KT0803] Length = 296 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 78/300 (26%), Positives = 155/300 (51%), Gaps = 15/300 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L++E+ + T+ +Y+ D F F+ E+ TI ++SY++IR++I + Sbjct: 6 FLDYLQLEKKYAFHTITAYKADLNAFQDFIQNTFEQ----DTILEVSYSQIRSWIVELSE 61 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 I +R++ R +S +K++ ++L K K S + + LK + +E++ +++++N Sbjct: 62 SGISNRTINRKISSLKAYYRFLLKTKQIEFSPLAKHKALKTPKKIQIPFSEEEIVSVLEN 121 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + ++ + R I+ L Y G+R E +++ ++ ++ L++ GK K R + Sbjct: 122 I-----DDSTYEGIRGRLIVELFYSTGIRRIELINIQLSDLDLERGVLKVLGKRSKERYI 176 Query: 201 PLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 PL+ SV ++Y + + +N + + LF +G + R I + L Sbjct: 177 PLISSVIDTAVKYLERRREEGVNHDSEF-LFLTSKGDKIYESFVYRVINNYFSEVSGKLK 235 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H LRHSFATHLL+ G +L +++ +LGH L+ TQ+YT+ N + +I+ HP Sbjct: 236 KSPHILRHSFATHLLNQGANLNAVKELLGHSSLAATQVYTH----NSIAELSKIHQNAHP 291 >gi|332653317|ref|ZP_08419062.1| tyrosine recombinase XerD [Ruminococcaceae bacterium D16] gi|332518463|gb|EGJ48066.1| tyrosine recombinase XerD [Ruminococcaceae bacterium D16] Length = 295 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 84/296 (28%), Positives = 145/296 (48%), Gaps = 17/296 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L E+ S T+ SY D QF +A E+ + + +L+ ++ ++ + Sbjct: 14 LTTEKKASANTVSSYLRDMHQFETAMA---EQDLELT---ELAVQDVELYVDGLTRKGKS 67 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 ++ RS++ IKSF + I + ++ K LP+ L K+ + L Sbjct: 68 AATVTRSIASIKSFYNCMIALGIMDRNPAKDVVAAKVERKLPQILTGKEV-----ELFLE 122 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + R+ A+L LLY G+R+SE ++L ++ L + KG + RI+PL Sbjct: 123 QPDCSDLKGFRDRAMLELLYATGIRVSELIALDVDDLNLPAGVLHCESKG-RERIIPLYH 181 Query: 205 SVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 + +A+ +Y + P + + LF + G+ ++ F + I+ + G+ T H Sbjct: 182 TAIRALSDYITQVRPQLVESPEETALFVNMSGERMSRQGFWKLIKHYQEKAGIQKDITPH 241 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 TLRHSFA HLL NG DLRSIQ +LGH +S+TQIY+ + S+ + ++Y + HP Sbjct: 242 TLRHSFAAHLLENGADLRSIQEMLGHADISSTQIYSRLVSQK----LKDVYHKAHP 293 >gi|158313011|ref|YP_001505519.1| integrase family protein [Frankia sp. EAN1pec] gi|158108416|gb|ABW10613.1| integrase family protein [Frankia sp. EAN1pec] Length = 344 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 81/309 (26%), Positives = 137/309 (44%), Gaps = 22/309 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + ++++L ER S T+++Y D + L +R +++ Sbjct: 48 EAFVRHLVAERDRSPETVRAYRADL-----AGLRAHAAAAGRTDLLDLDLAVLRGWLAGM 102 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R+ ++ R S + F + +R + + + +P+ L QA Sbjct: 103 RSAGAAPATIARRASLARVFSAFAARRGFLPDDVGARLATTRAPRRIPQVLTAAQA---- 158 Query: 139 DNVLLHTSHETKWIDARNSA-------ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 D +L + D R+ A +L +LYG +R+SE L ++ ++ LR+ Sbjct: 159 DRLLETRPRGDRAQDPRDVALNLRDDLVLEILYGSAVRVSELCRLDIGDVDHERRLLRVH 218 Query: 192 GKGDKIRIVPL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 GKG + R VP +P+ + P+ L ++ L G RG L+P +R ++ Sbjct: 219 GKGGRQRSVPFSVPAAGALDVWLTRGRPY-LATRVEAALLLGARGGRLDPRSVRRLVQAR 277 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+P T H LRH ATH++ G DLRS+Q +LGH LSTTQIYT+V + + Sbjct: 278 GAAAGVPTGLTPHGLRHGAATHMVEGGADLRSVQELLGHASLSTTQIYTHVTPER----L 333 Query: 311 MEIYDQTHP 319 +DQ HP Sbjct: 334 RAAFDQAHP 342 >gi|157827055|ref|YP_001496119.1| site-specific tyrosine recombinase XerD [Rickettsia bellii OSU 85-389] gi|157802359|gb|ABV79082.1| site-specific tyrosine recombinase XerD [Rickettsia bellii OSU 85-389] Length = 305 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 93/296 (31%), Positives = 150/296 (50%), Gaps = 25/296 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ L ER LSK ++ SY+ D F +LA ++ I T IR ++ Sbjct: 7 FLEMLLAERALSKNSILSYKRDLLDFHNYLAKQKLSELNITT------DNIRNWVEYLAE 60 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS+ R +S IKS+ ++L T + +LN+ K N LP L ++ + + Sbjct: 61 NGLQARSINRKISTIKSYYEFLISENHTNLNPLLNIDLPKYQNKLPEIL----SIDDIKS 116 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------GKG 194 +L + S + AR +A+++LLY GLR+SE +SL +I+ ++ + ++ GKG Sbjct: 117 LLEYCSQDISPEGARLNAMIHLLYASGLRVSELVSLKLSDILSNKVSREVKKIFSVLGKG 176 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LF-RGIRGKPLNPGVFQRYIR 248 +K RI+ + ++++Y L D +N P LF + F ++ Sbjct: 177 NKERIIVINEPAINSLVKY--LVVRDNFVNKTKPKNLIYLFPSSAAAGYMTRQNFAILLK 234 Query: 249 QLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 Y GL P + H LRHSFA+HLL G DLR IQ +LGH +STTQIYT++ + Sbjct: 235 SAALYAGLNPEHISPHVLRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQT 290 >gi|198284453|ref|YP_002220774.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667286|ref|YP_002427120.1| tyrosine recombinase XerC [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248974|gb|ACH84567.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519499|gb|ACK80085.1| tyrosine recombinase XerC [Acidithiobacillus ferrooxidans ATCC 23270] Length = 314 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 86/298 (28%), Positives = 145/298 (48%), Gaps = 14/298 (4%) Query: 31 LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90 +S T+ +Y D + F + +I Q+ +RA++ R++ + RSL+R Sbjct: 20 VSPATISAYSRDLHAWARFALQRGQTEIA-----QMDRGSLRAYLLAERSRGVSVRSLRR 74 Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150 + +++ ++L++ + + + + LP L QA L+ + T + Sbjct: 75 HFAALRALYRHLQQDAPELRNPVSGLAMPRAEQRLPDWLTVDQARLLMQPAISDTEAAPQ 134 Query: 151 -WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 + R+ IL LLY LR+SE L ++ T+R+ GKG K RIVP+ A Sbjct: 135 DFTGLRDQLILELLYSSALRVSELAGLNLGDLDPHAGTVRVLGKGRKERIVPVGQPAWAA 194 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPLSTTAHTLRHS 268 + Y P + + + LF RG+ L Q +++L LG PL HTLRHS Sbjct: 195 LRAYLAARPA-VAASDEPALFVNRRGQRLTVRSIQVRVKKLGDARLGQPLHP--HTLRHS 251 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDK 326 A+HLL + GDLR++Q LGH + TT IYT+++ + + ++YDQ HP + D+ Sbjct: 252 AASHLLQSSGDLRAVQEYLGHAGIGTTAIYTHMDYQQ----LAQVYDQAHPRSRRGDQ 305 >gi|83595882|gb|ABC25244.1| tyrosine recombinase xerC [uncultured marine bacterium Ant4D3] Length = 312 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 89/315 (28%), Positives = 156/315 (49%), Gaps = 34/315 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFL-----AFYTEEKITIQTIRQLSYTEIRA 73 Q +L L + S T+ +Y D ++ + L + + + TIR A Sbjct: 13 QQYLDYLAYNKRYSPHTINAYARDMQRLIETLEDQGHGMWADAQA--DTIRD-------A 63 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 ++ R+T + +S++R LS +SF YL ++ + + + +R K LP +L+ Q Sbjct: 64 MVTARKTH-LAPKSIQRILSSWRSFFTYLLQQNLVKLNPVDGIRAPKSPRKLPNSLDPDQ 122 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 + VL T + R+ A+L L Y CGLR++E SL +I ++L + GK Sbjct: 123 ----ISQVLNATITSDDPMAMRDKAMLELTYSCGLRLAELASLNVFDIDLTDASLIVTGK 178 Query: 194 GDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 G+K R +P+ + +++ + + L D N LF RG+ + Q + Sbjct: 179 GNKTRQLPIGRQAITALKSWLQQRGQLKCHDANA-----LFINHRGQRMGVRGIQMRMAN 233 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 + G + H LRHSFA+HLL + GDLR++Q +LGH +STTQ+YT+++ ++ Sbjct: 234 MAATHGQHIH--PHMLRHSFASHLLQSSGDLRAVQELLGHSNISTTQVYTHLDYQH---- 287 Query: 310 MMEIYDQTHPSITQK 324 + ++YD+ HP +K Sbjct: 288 LAKVYDKAHPRAQEK 302 >gi|262392887|ref|YP_003284741.1| tyrosine recombinase XerC [Vibrio sp. Ex25] gi|262336481|gb|ACY50276.1| tyrosine recombinase XerC [Vibrio sp. Ex25] Length = 310 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 83/301 (27%), Positives = 152/301 (50%), Gaps = 16/301 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L E+GLS T ++Y +Q L +A + E + ++ Q+ +R K + + Sbjct: 24 LRSEKGLSLHTQRNY----KQQLETMAQHLAE-MGLKDWSQVDAGWVRQLAGKGMREGMK 78 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 SL LS ++SF +L R + + + +K LP+ L+ + L++ Sbjct: 79 ASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVSQLLE----- 133 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 +E + R+ A++ L+YG GLR++E +S+ +++ LR+ GKGDK R VP Sbjct: 134 -VNEDDPLAVRDRAMMELMYGAGLRLAELVSVDVRDVQLRSGELRVIGKGDKERKVPFSG 192 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 + + ++ + DL + LF G ++ Q+ + + + + + H Sbjct: 193 MATEWVAKWLKVR-GDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQKQSVASHISPHK 251 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ ++ + + YDQ HP +K Sbjct: 252 LRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQH----LAQAYDQAHPRARKK 307 Query: 325 D 325 + Sbjct: 308 N 308 >gi|253690334|ref|YP_003019524.1| tyrosine recombinase XerC [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756912|gb|ACT14988.1| tyrosine recombinase XerC [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 311 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 89/315 (28%), Positives = 154/315 (48%), Gaps = 20/315 (6%) Query: 7 PEIVSFELLK-ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65 PE S LL+ + +L+ L++ER LS LT SY RQ + + + R+ Sbjct: 8 PEAPSSSLLQADVDAFLRYLKVERQLSPLTQTSY---LRQLSAIITILSAAGVV--DWRK 62 Query: 66 LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 L +R+ +S+ + + SL LS ++SFL ++ R + T + + + L Sbjct: 63 LDAAGVRSVVSRSKRDGLHSGSLALRLSALRSFLDWMVSRGVLTANPAKGISTPRAGRPL 122 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDD 184 P+ ++ VD + + A R+ +L ++YG GLR++E + + Q+I Sbjct: 123 PKNMD-------VDEMDRLLDIDLDDPLAVRDRTMLEVMYGAGLRLAELVGMDCQHIDLA 175 Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 + + GKG K R +P+ + LE + L +L +F +G+ ++ Q Sbjct: 176 SGEVWVMGKGSKERKLPIGKTA-VTWLERW-LALRELFGPQDDAVFISNQGRRISMRNVQ 233 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + + G+ H LRHSFATH+L + GDLR++Q +LGH LSTTQIYT+++ + Sbjct: 234 KRFAEWGIKQGVNSHVHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQ 293 Query: 305 NGGDWMMEIYDQTHP 319 + + +YD HP Sbjct: 294 H----LASVYDAAHP 304 >gi|269977906|ref|ZP_06184860.1| tyrosine recombinase XerC [Mobiluncus mulieris 28-1] gi|269933872|gb|EEZ90452.1| tyrosine recombinase XerC [Mobiluncus mulieris 28-1] Length = 361 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 93/346 (26%), Positives = 154/346 (44%), Gaps = 58/346 (16%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFL----------AFYTEEKITIQTIRQLSYTE---- 70 L RG S +L++Y D R+ L FL + + R + E Sbjct: 21 LRANRGFSPHSLRAYLGDLRELLEFLCPPVALVPAAGLAAPPRSGESSGRGFAAPELSRA 80 Query: 71 ------IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 IRA++ + +L R ++ ++F + K + + L + + K NS Sbjct: 81 LSDPARIRAWLGDMSRRGASRATLARRVASFRTFSAWALKHGFMSCDSGLRLHSPKPDNS 140 Query: 125 LPRALNEKQALTLVDNVLLH----------TSHETKWIDA----------------RNSA 158 LP LNE Q L++ L + +T+ D+ R+ A Sbjct: 141 LPTVLNEAQVARLLNTARLQAYSLGVHQKASKSQTEIPDSIPGDSAVPYRANPVGLRDWA 200 Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD--- 215 +L LLY G+R+SE L ++I ++T+R+ GKG K R+ P A+ EY + Sbjct: 201 LLELLYATGVRVSELTGLRLRDISRSEATIRVCGKGGKERVAPYGIPAGIALDEYLEQGR 260 Query: 216 --LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 L D + +F G++G L+ + + + ++ G+P H LRH+ ATHL Sbjct: 261 PVLVSPDRDAGEW--VFLGVKGGRLDTRLVRGMLHRMTAVAGVP-DLGPHGLRHTAATHL 317 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 L+ G DLR +Q ILGH L TTQ YT++++ + + ++Y Q HP Sbjct: 318 LNGGADLRCVQEILGHASLGTTQRYTHLSTTH----LRQVYLQAHP 359 >gi|134296744|ref|YP_001120479.1| site-specific tyrosine recombinase XerD [Burkholderia vietnamiensis G4] gi|134139901|gb|ABO55644.1| tyrosine recombinase XerD [Burkholderia vietnamiensis G4] Length = 320 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 87/297 (29%), Positives = 137/297 (46%), Gaps = 19/297 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E GLS+ TL +Y D F +LA + + +I+ R K Sbjct: 39 LWLEHGLSRNTLDAYRRDLMLFSQWLAATHHAALD-----SADEAMVTGYIAARSDGKA- 92 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S R LS + + + + + L + + K+ P L+E Q L+ + Sbjct: 93 -TSSNRRLSVFRRYYGWAVREHRASADPTLRIASAKQGARFPSTLSEAQVEALLGAPDIG 151 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 T + R+ +L L+Y GLR+SE ++L + ++ +R+ GKG K R+VP Sbjct: 152 TP-----LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPF-G 205 Query: 205 SVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 V +E Y D P L LF RG + F I++ + + + Sbjct: 206 EVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQRADVRAHLSP 265 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V + + ++ Q HP Sbjct: 266 HTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARER----LRTLHAQHHP 318 >gi|294625207|ref|ZP_06703848.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600481|gb|EFF44577.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 323 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 91/309 (29%), Positives = 144/309 (46%), Gaps = 23/309 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L E+G+++ TL+SY D + + I Y + R Sbjct: 28 ERFLDRFWAEQGVARQTLESYRRDLEGLARWRDGAGGGLLGIDRAVLFDY------LRWR 81 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 RS R LS +++F + + ++ + + SLP+AL E Q L+ Sbjct: 82 TRANYSPRSTARLLSTLRAFYGLCLRDGVRSDDPTALIDPPQLPRSLPKALTESQIEALL 141 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L T R+ A+L L+Y GLR+SE ++L + Q LR+ GKG K R Sbjct: 142 AAPDLDT-----LAGLRDRAMLELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDR 196 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNI-------QLPLFRGIRGKPLNPGVFQRYIRQLR 251 +VPL + + Y L N Q+PLF + +PL+ F +++ Sbjct: 197 LVPLGEESQHWLERYLREARPLLAANKPVTAVDGQVPLFIDVSRQPLSRQQFWALVKRYA 256 Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ P + + H LRHSFATHLL++G DLR++Q +LGH LSTTQIYT V ++ + Sbjct: 257 AAAGIDPATVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQH----L 312 Query: 311 MEIYDQTHP 319 +++ HP Sbjct: 313 QKLHASHHP 321 >gi|221211426|ref|ZP_03584405.1| tyrosine recombinase XerD [Burkholderia multivorans CGD1] gi|221168787|gb|EEE01255.1| tyrosine recombinase XerD [Burkholderia multivorans CGD1] Length = 316 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 140/297 (47%), Gaps = 19/297 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E GL++ TL +Y D F +LA + + T + +I+ R K Sbjct: 35 LWLEHGLARNTLDAYRRDLTLFSQWLAATHDAALDAA-----DETMLTGYIAARSDGKA- 88 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S R LS + + + + + L + + K++ P L+E Q L+ + Sbjct: 89 -TSSNRRLSVFRRYYGWAVREHRASADPTLRIASAKQAARFPSTLSEAQVEALLGAPDIA 147 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 T + R+ +L L+Y GLR+SE ++L + ++ +R+ GKG K R+VP Sbjct: 148 TP-----LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPF-G 201 Query: 205 SVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 V +E Y + P L LF RG + F I++ + + + Sbjct: 202 EVAHGWIERYLREARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSP 261 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V + + ++ Q HP Sbjct: 262 HTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARER----LRTLHAQHHP 314 >gi|221633040|ref|YP_002522265.1| tyrosine recombinase xerD [Thermomicrobium roseum DSM 5159] gi|221155467|gb|ACM04594.1| tyrosine recombinase xerD [Thermomicrobium roseum DSM 5159] Length = 331 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 83/281 (29%), Positives = 134/281 (47%), Gaps = 10/281 (3%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + ERGLS T+ +Y D QF A Y E+ ++ +L + AF+ Sbjct: 23 EEFLTGVVRERGLSPNTIAAYRNDLEQF----ANYVAERFGLRDWSELVSEHLEAFLGYL 78 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R ++ + + R L+ IKSF YL + + + + + PRA+ K+ V Sbjct: 79 RDRQYAETTAARKLAAIKSFCHYLVRAGLIGANPADGLPVPRVGRFAPRAIGPKE----V 134 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + ++ S + R+ A+L L GLR+SE +L +++ D+ L ++ + R Sbjct: 135 EQLIAAASSDRTPEGLRDRAMLITLATTGLRVSELTALDVRDVDLDRGELIVRRPNGRER 194 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VPL +A+ +Y + P L + LF RG L F ++ GLP Sbjct: 195 VVPLAREAIEALRDYLERGRPGFTTLKGEQALFLNHRGSRLTRQGFWLILKNYAAAAGLP 254 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 T HTLRHSFA L +G DLR +Q +LGH +TTQ+Y Sbjct: 255 -EVTPHTLRHSFAVRALVDGWDLRDLQRVLGHVSPATTQVY 294 >gi|144897317|emb|CAM74181.1| Tyrosine recombinase xerD [Magnetospirillum gryphiswaldense MSR-1] Length = 306 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 90/320 (28%), Positives = 149/320 (46%), Gaps = 43/320 (13%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 + ++ +L+ + +ER + TL +Y D +L ++ + Y +RA Sbjct: 5 RHKEAFLEMMAVERAAAINTLDAYRRDLDDLDNYLTKRGGAPLSARPADLAGY--MRALA 62 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 + R+ R LS ++ F ++ + + + SLP+ L+EKQ Sbjct: 63 D----AGMATRTQARRLSCLRQFYGFVFAEGWRADDPTSRLDAPRLGRSLPKYLSEKQVG 118 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L+D S + + + +A+L LLY GLR+SE + L + D + L ++GKGD Sbjct: 119 DLLDAARALESPQGEMM----TALLELLYATGLRVSELVGLPYSAVARDPALLVVRGKGD 174 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-----LNPGV-------- 242 K R+VPL R A L + LPL + + GK L PG Sbjct: 175 KERMVPLSDPARAA-------------LRVWLPLRQDLLGKKKTSRWLFPGSGKTGHLTR 221 Query: 243 --FQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 F R + ++ G+ P + H LRH+FATHLL++G DLR +Q +LGH ++TT+IYT Sbjct: 222 AGFARALLRVGMKAGIDPRRLSPHVLRHAFATHLLAHGADLRVVQELLGHADIATTEIYT 281 Query: 300 NVNSKNGGDWMMEIYDQTHP 319 +V + + + +Q HP Sbjct: 282 HVLEEP----KVRLVNQHHP 297 >gi|332716418|ref|YP_004443884.1| tyrosine recombinase xerD [Agrobacterium sp. H13-3] gi|325063103|gb|ADY66793.1| tyrosine recombinase xerD [Agrobacterium sp. H13-3] Length = 331 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 93/325 (28%), Positives = 150/325 (46%), Gaps = 33/325 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L+ + ERG + TL SYE D FL Q++ + + ++ A+++ Sbjct: 15 ESFLEMMSAERGAAANTLSSYERDLSDLREFLGGRG------QSLMEAATADLSAYLTHL 68 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 TQ S R LS ++ F ++L + + + KK +LP+ ++ L+ Sbjct: 69 STQGFAATSQARRLSSMRQFYRFLYSEGLRGDDPTGTIDAPKKGLTLPKTMSVADVTKLL 128 Query: 139 ----DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 + L + I R +L LLY G+R+SE +SL + + + L I+GKG Sbjct: 129 GIAAEEAALTGPGQLARI--RMHLLLELLYATGMRVSELVSLPVKVLRQEGRFLMIRGKG 186 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNP------------- 240 +K R+V LL +E YD L + P P +P Sbjct: 187 NKDRMV-LLSRAAIEAMEKYDAARKSLVPEKSRTPASPKKADSPESPWLFPSNSKEGHLP 245 Query: 241 -GVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 VF R ++ + GL P + + H LRH+FA+HLL NG DLR++Q +LGH +STTQIY Sbjct: 246 RQVFARDLKDIAIRAGLNPSAVSPHVLRHAFASHLLQNGADLRAVQELLGHSDISTTQIY 305 Query: 299 TNVNSKNGGDWMMEIYDQTHPSITQ 323 T+V + + E+ HP Q Sbjct: 306 THVLEER----LQELVQTHHPLAKQ 326 >gi|309811471|ref|ZP_07705253.1| phage integrase, N-terminal SAM domain protein [Dermacoccus sp. Ellin185] gi|308434522|gb|EFP58372.1| phage integrase, N-terminal SAM domain protein [Dermacoccus sp. Ellin185] Length = 352 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 66/177 (37%), Positives = 101/177 (57%), Gaps = 15/177 (8%) Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207 E + + AR++A+L LLY G+R+ E SL + + +R+ GKG K R+VP R Sbjct: 184 EERAVRARDAAVLELLYASGMRVGELASLDVSALDEANQLVRVMGKGRKERMVPYGLPAR 243 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-----RRYLGLPLSTTA 262 +A LE + C L + + LF G+RG+ ++ QR +R+L G P + + Sbjct: 244 EA-LERWLRCRGALAADGERALFVGVRGRRID----QRIVRELVNRATASVDGAP-TLSP 297 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHS ATHL+ G DLR++Q LGH L+TTQIYT+V+++ + ++Q HP Sbjct: 298 HALRHSAATHLVEGGADLRTVQEYLGHASLATTQIYTHVSAER----LRAGFEQAHP 350 >gi|188590854|ref|YP_001795454.1| site-specific tyrosine recombinase xerc [Cupriavidus taiwanensis LMG 19424] gi|170937748|emb|CAP62732.1| site-specific tyrosine recombinase [Cupriavidus taiwanensis LMG 19424] Length = 349 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 90/325 (27%), Positives = 151/325 (46%), Gaps = 50/325 (15%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +WL+ R L++ TL Y R+ + A + + + L IR F ++ Sbjct: 24 DWLRG---SRKLAEHTLSGY---ARELRVLQAHAAQHAPGVALL-ALQTHHIRNFAARLH 76 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLV 138 + S+ R+LS + F + + N ++ +R + ++LP+AL+ + A+ LV Sbjct: 77 AAGLVGTSIGRALSAWRGFYLWAARHGHGVSVNPVDGVRAPRSGHALPKALSVEHAVALV 136 Query: 139 DNVLLHTSHETKWIDA---RNSAILYLLYGCGLRISEALSLTPQNIMDDQ---------- 185 +H DA R+ A+ L Y GLR+SE + L + D Sbjct: 137 -------AHPAG-TDAEALRDQAVYELFYSSGLRLSELVQLDLRYAEADGYRSSGWLDLA 188 Query: 186 -STLRIQGKGDKIRIVPLLP----------SVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234 + + + GKG + R VP+ +VR +L P D + LF G R Sbjct: 189 GAEVTVTGKGSRRRTVPVGGRAIAALQAWLAVRDGLLRP-GAAPEDAHA-----LFLGPR 242 Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 G+ L+ Q ++Q G+P H LRHSFATH+L + GDLR++Q +LGH +ST Sbjct: 243 GRRLSMRTVQLRLKQQALRAGVPADVHPHMLRHSFATHMLQSSGDLRAVQEMLGHASIST 302 Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHP 319 TQ+YT ++ ++ + ++YD+ HP Sbjct: 303 TQVYTALDFQH----LAKVYDKAHP 323 >gi|125973246|ref|YP_001037156.1| site-specific tyrosine recombinase XerC [Clostridium thermocellum ATCC 27405] gi|256003724|ref|ZP_05428712.1| integrase family protein [Clostridium thermocellum DSM 2360] gi|281417446|ref|ZP_06248466.1| integrase family protein [Clostridium thermocellum JW20] gi|125713471|gb|ABN51963.1| phage integrase [Clostridium thermocellum ATCC 27405] gi|255992285|gb|EEU02379.1| integrase family protein [Clostridium thermocellum DSM 2360] gi|281408848|gb|EFB39106.1| integrase family protein [Clostridium thermocellum JW20] gi|316940523|gb|ADU74557.1| integrase family protein [Clostridium thermocellum DSM 1313] Length = 330 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 90/305 (29%), Positives = 159/305 (52%), Gaps = 31/305 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA--FYTEEK-----------ITIQTIRQ 65 +++L +E RG SK T+ Y D R F F+ F E+ + I I++ Sbjct: 14 KDFLSYMETIRGKSKNTIHEYYYDLRLFFRFMKIHFGLEDSKKDFDSIDIKDMDIDVIKK 73 Query: 66 LSYTEI---RAFISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKK 121 ++ ++I +F+S+ R R+ R ++ I+SF YL K K+ ++ + + K Sbjct: 74 ITLSDIYSFMSFLSRERDNTASSRA--RKVASIRSFFNYLTNKAKLLEQNPAAELESPKI 131 Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 LPR LN +++ L+ ++ H+ R+ AI+ L CGLR+SE +++ NI Sbjct: 132 MKRLPRYLNIEESKRLLGSI--DGEHKE-----RDFAIITLFLNCGLRLSELVNINLSNI 184 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241 +D L + GKG+K R + L + +KA+ Y + P D + + LF R + ++ Sbjct: 185 KND--VLTVVGKGNKERTIYLNAACKKALDAYLKVRPVD-GVKDKNALFLSSRKQRISNK 241 Query: 242 VFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYT 299 Q +++ + GL P + H LRH+ AT + +G D+R++Q ILGH ++TT+IYT Sbjct: 242 TVQHIVKKYIKAAGLDPERYSTHKLRHTAATLMYKHGNVDIRALQEILGHESIATTEIYT 301 Query: 300 NVNSK 304 +V+S+ Sbjct: 302 HVDSQ 306 >gi|257094620|ref|YP_003168261.1| tyrosine recombinase XerD [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047144|gb|ACV36332.1| tyrosine recombinase XerD [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 304 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 94/308 (30%), Positives = 149/308 (48%), Gaps = 19/308 (6%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI-TIQTIRQLSYTEIRA 73 L E + L +E GL+K +L SY D Q +LA E+++ ++ I + + A Sbjct: 11 LAEIDAFCDTLWLEDGLAKASLSSYRSDLGQLAGWLA---EQRLGSLCGIDEATLLRFVA 67 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 ++ Q + S R LS ++ F ++ + L + K + LP+ L+E Q Sbjct: 68 TLA----QTLRASSQARYLSTLRRFYRHQVAHGRRSSDPTLRIAMPVKPSRLPKVLSELQ 123 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 V+ +L ET + R+ A+L LY GLR+SE + L + D +R+ GK Sbjct: 124 ----VERLLGAPPSETP-LGQRDRAMLETLYATGLRVSELVGLKLHEVSLDMGVVRVFGK 178 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRR 252 G K R+VPL R + + L Q +F RG + F + I++ Sbjct: 179 GAKERLVPLGEEARDWLRRHLADGRLALLAGRQSDDVFVTARGAAMTRQAFWQLIKRYAL 238 Query: 253 YLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 G+ P + H LRH+FATHLL++G DLR +Q +LGH +STTQIYT+V + + Sbjct: 239 QAGMDPARLSPHVLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARER----LK 294 Query: 312 EIYDQTHP 319 ++ Q HP Sbjct: 295 ILHAQHHP 302 >gi|38233776|ref|NP_939543.1| site-specific tyrosine recombinase XerD [Corynebacterium diphtheriae NCTC 13129] gi|38200037|emb|CAE49713.1| integrase/recombinase [Corynebacterium diphtheriae] Length = 311 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 87/319 (27%), Positives = 152/319 (47%), Gaps = 37/319 (11%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + WL +L +E+G+S TL +Y D ++ +L I I +S +I ++ + Sbjct: 9 RQWLTHLAVEKGVSDNTLSNYRRDLERYTRWLQVQG-----ITDIENISAQDIERYVQEL 63 Query: 79 RTQKIGDRSLKRS-------------LSGIKSF--LKYLKKRKITTESNILNMRNLKKSN 123 R GD + G+ F L+ L + ++ + + M Sbjct: 64 RK---GDSDTGKKPLAASSAARALIVARGLHRFALLENLVENDVSADVSPPAM-----GR 115 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--- 180 LP L+ ++ L++ + + + + + R+ A+L LY G RISEA+ L + Sbjct: 116 HLPDTLSVEEVNRLIEAIPIDDAASPE--NLRDCALLEFLYATGARISEAVGLVVDDVAA 173 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240 I++++ +RI GKG+K RIVP+ A+ Y ++ LF RG L+ Sbjct: 174 IVENEGIVRITGKGNKQRIVPVGDQCLSALERYVVRSRPAMSKGKSHALFLNKRGGQLSR 233 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + ++ + G+ + HTLRHSFATHLL G D+R +Q +LGH ++TTQIYT+ Sbjct: 234 QSAWQILKNSAQRAGIEKDISPHTLRHSFATHLLEGGADVRVVQELLGHSSVTTTQIYTH 293 Query: 301 VNSKNGGDWMMEIYDQTHP 319 V + N + ++ ++HP Sbjct: 294 VTADN----LRFVWSRSHP 308 >gi|166713420|ref|ZP_02244627.1| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv. oryzicola BLS256] Length = 323 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 90/309 (29%), Positives = 145/309 (46%), Gaps = 23/309 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L E+G+++ TL+SY D + + I Y RA Sbjct: 28 ERFLDRFWAEQGVARQTLESYRRDLEGLARWRDGAGGGLLGIDRAALFDYLRWRA----- 82 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 RS R LS +++F + + + ++ + + SLP+AL E Q + Sbjct: 83 -QATYSPRSTARLLSTLRAFYGWCLRDGVRSDDPTALIDPPQLPRSLPKALTESQ----I 137 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + +L +T R+ A+L L+Y GLR+SE ++L + Q LR+ GKG K R Sbjct: 138 EALLAAPEVDTP-AGLRDRAMLELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDR 196 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNI-------QLPLFRGIRGKPLNPGVFQRYIRQLR 251 +VPL + + Y L N Q+PLF + L+ F +++ Sbjct: 197 LVPLGEESQHWLERYLRQARPLLAANKPVAAVDGQVPLFIDAARQALSRQHFWALVKRYA 256 Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ P + + H LRHSFATHLL++G DLR++Q +LGH LSTTQIYT V ++ + Sbjct: 257 AVAGIDPATVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQH----L 312 Query: 311 MEIYDQTHP 319 +++ HP Sbjct: 313 QKLHASHHP 321 >gi|118586872|ref|ZP_01544306.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163] gi|118432704|gb|EAV39436.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163] Length = 302 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 89/304 (29%), Positives = 156/304 (51%), Gaps = 22/304 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++ + L ERGL + +++SY+ D +F A+ +E I + + + + I +++ + Sbjct: 14 DYTRYLRTERGLLENSIKSYKQDLSEFG---AYIQKENILLVKVDRFT---ILDWLNYLQ 67 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN--EKQALTL 137 + S+ +S ++ F YL + +L + KK++ LP+ L E +A+ Sbjct: 68 NSGKSNNSIVHMVSSLRKFFAYLSDDQQIQIDPMLKVTTPKKNSHLPQVLTATEIEAVLA 127 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 V ++ + + RN A+L +Y G R+SE +L ++ D+ + GKG K Sbjct: 128 VPDI-------STTLGLRNRALLETMYATGFRVSEICNLKLADLHDELGLITTIGKGQKQ 180 Query: 198 RIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYLG 255 RIVP+ I +Y+ P L LF G ++ G+F + ++++ G Sbjct: 181 RIVPIGEMSLLYISKYFKESRPILLKDKESPYLFLNDHGHRISRQGIF-KLVKEIAIKAG 239 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + HTLRHSFAT+LL NG DLR +Q +LGH +STTQIYT+V+ K+ + E Y+ Sbjct: 240 IDKDISPHTLRHSFATNLLENGADLRIVQELLGHSDISTTQIYTHVSQKH----IREQYN 295 Query: 316 QTHP 319 + HP Sbjct: 296 RFHP 299 >gi|121608682|ref|YP_996489.1| tyrosine recombinase XerD [Verminephrobacter eiseniae EF01-2] gi|121553322|gb|ABM57471.1| tyrosine recombinase XerD [Verminephrobacter eiseniae EF01-2] Length = 303 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 85/301 (28%), Positives = 150/301 (49%), Gaps = 19/301 (6%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L L +E GL++ TL +Y D ++ A + + + + ++A+ + R Q Sbjct: 11 LDALWLEDGLARNTLAAYRSDLTRY----AQWLHAQQPAVALDDTAEHHLQAYFAARHAQ 66 Query: 82 KIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 S R L+ ++ + + L++R+I+ + + + +P+ + E Q Sbjct: 67 TRAT-SANRRLTVLRRYFHWALRERRISADPTA-RLAAARVPLRVPKTMTETQV-----E 119 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LL + R+ A+L L+Y GLR++E + L ++ D++ LR+ GKG K R++ Sbjct: 120 ALLQAPDPGTPLGLRDRAMLELMYASGLRVTELVGLKTFHLALDENLLRVTGKGGKERLL 179 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 P + LE Y + L Q LF RG + +F ++Q R G+ + Sbjct: 180 PFGVEAGQ-WLERYLQQARGVILGGQRTDDLFVTRRGCGMTRVMFWIIVKQWARVAGITV 238 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + HTLRH+FATHLL++G DLR +Q +LGH +STT IYT+V + + +++D+ H Sbjct: 239 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARQR----LKQLHDEHH 294 Query: 319 P 319 P Sbjct: 295 P 295 >gi|171320434|ref|ZP_02909468.1| tyrosine recombinase XerD [Burkholderia ambifaria MEX-5] gi|171094319|gb|EDT39392.1| tyrosine recombinase XerD [Burkholderia ambifaria MEX-5] Length = 320 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 87/297 (29%), Positives = 141/297 (47%), Gaps = 19/297 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E GL++ TL +Y D F +LA + + + + + +I+ R K Sbjct: 39 LWLEHGLARNTLDAYRRDLVLFSQWLA--ATHDVPLDSADE---AMLIGYIAARSDGKA- 92 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S R LS + + + + + L + + K++ P L+E Q L+ + Sbjct: 93 -TSSNRRLSVFRRYYGWAVREHHASADPTLRITSAKQAARFPSTLSEAQVEALLGAPDIG 151 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 T + R+ +L L+Y GLR+SE ++L + ++ +R+ GKG K R+VP Sbjct: 152 TP-----LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPF-G 205 Query: 205 SVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 V +E Y D P L LF RG + F I++ R + + Sbjct: 206 EVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHARQADVRAHLSP 265 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V + + ++ Q HP Sbjct: 266 HTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARER----LRTLHAQHHP 318 >gi|163803624|ref|ZP_02197489.1| tyrosine recombinase [Vibrio sp. AND4] gi|159172572|gb|EDP57432.1| tyrosine recombinase [Vibrio sp. AND4] Length = 313 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 86/312 (27%), Positives = 158/312 (50%), Gaps = 16/312 (5%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 L K Q + + L E+GLS T ++Y +Q L +A + E + ++ Q+ + +R Sbjct: 13 LQKPLQRFYEFLRSEKGLSLHTQRNY----KQQLETMAQHLVE-MGLKDWSQVDASWVRQ 67 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 K + + S+ LS ++SF +L R + + + +K LP+ L+ + Sbjct: 68 LAGKGMREGMKASSVATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDE 127 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L++ +E + R+ A++ L+YG GLR++E +S+ ++I LR+ GK Sbjct: 128 VSQLLE------VNEGDALAVRDRAMMELMYGAGLRLAELVSVDMRDIQLRSGELRVIGK 181 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 GDK R VP + + ++ + D+ + LF G ++ Q+ + Q + Sbjct: 182 GDKERKVPFSGMATEWVGKWLRVR-GDIAAPGEPALFVSKLGTRISHRSVQKRMAQWGQK 240 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 + + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ ++ + + Sbjct: 241 QSVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQH----LAQA 296 Query: 314 YDQTHPSITQKD 325 YDQ HP +K+ Sbjct: 297 YDQAHPRARKKN 308 >gi|94309464|ref|YP_582674.1| site-specific tyrosine recombinase XerD [Cupriavidus metallidurans CH34] gi|93353316|gb|ABF07405.1| tyrosine-based site-specific recombinase [Cupriavidus metallidurans CH34] Length = 302 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 144/297 (48%), Gaps = 17/297 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E GL++ T+ +Y R+ L LA + E T + + T + + + R + Sbjct: 19 LWLEDGLARNTIDAY----RRDLAMLARWLHESGTTALL-GVDDTALSGYFAARHLETRA 73 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S R L+ + F ++ + + L +R K+ P+ L+E Q + L++ + Sbjct: 74 S-SANRRLTVFRRFYQWALREHMIEADPCLLLRPAKQPPRFPKTLSEAQVVALLEAPDIE 132 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLL 203 T + R+ +L L+Y GLR+SE ++ + ++ R+ GKG+K R+VP Sbjct: 133 TP-----LGLRDRTMLELMYASGLRVSELTNMKTIEVGLNEGVARVVGGKGNKERLVPFG 187 Query: 204 PSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 + Y D P L LF RG+ + F I++ R G+ + Sbjct: 188 AQAGDWLHRYLSDARPTLLAGRACDELFVTQRGEGMTRQTFWHLIKKHARDAGIHAPLSP 247 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V + + E++ HP Sbjct: 248 HTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARER----LRELHLHHHP 300 >gi|260596035|ref|YP_003208606.1| site-specific tyrosine recombinase XerC [Cronobacter turicensis z3032] gi|260215212|emb|CBA27069.1| Tyrosine recombinase xerC [Cronobacter turicensis z3032] Length = 306 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 86/298 (28%), Positives = 144/298 (48%), Gaps = 17/298 (5%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L+ L++ER LS +TL +YE RQ + E +++ Q +R + R Sbjct: 19 LRYLKVERQLSPVTLLNYE---RQLAAIVGLAGEA--GLKSWAQCDAAMVRTLAVRSRRA 73 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 +G SL LS ++SF + + + + K LP+ ++ L+D Sbjct: 74 GLGPSSLALRLSALRSFFDWQVSQGELKANPAKGVSTPKTPRHLPKNIDVDDVNRLLDID 133 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 L + R+ A+L ++YG GLR+SE +++ +++ + + GKG K R +P Sbjct: 134 L------NDPLAVRDRAMLEIMYGAGLRLSELVNIDCRHLDLASGEVWVMGKGSKERRLP 187 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 + S I + +L +L LF +GK ++ Q+ + GL Sbjct: 188 IGRSAVAWIDHWLNL--RELFGPDDDALFLSKQGKRISARNVQKRFAEWGIKQGLNSHVH 245 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHSFATH+L + GDLR++Q +LGH LSTTQIYT+++ ++ + +YD HP Sbjct: 246 PHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHP 299 >gi|34222917|sp|Q8PGR5|XERD_XANAC RecName: Full=Tyrosine recombinase xerD gi|21109924|gb|AAM38394.1| integrase-recombinase XerD [Xanthomonas axonopodis pv. citri str. 306] Length = 305 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 92/309 (29%), Positives = 147/309 (47%), Gaps = 23/309 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L E+G+++ TL+SY D L LA + + + + + ++ R Sbjct: 10 ERFLDRFWAEQGVARQTLESYRRD----LEGLARWRDG--AGGGLLGIDRAALFDYLRWR 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 RS R LS +++F + ++ + SLP+AL E Q L+ Sbjct: 64 TRANYSPRSTARLLSTLRAFYGLCLRDGARSDDPTALIDPPHLPRSLPKALTESQIEALL 123 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L T R+ A+L L+Y GLR+SE ++L + Q LR+ GKG K R Sbjct: 124 AAPDLDTP-----AGLRDRAMLELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDR 178 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNI-------QLPLFRGIRGKPLNPGVFQRYIRQLR 251 +VPL + + Y L N Q+PLF + +PL+ F +++ Sbjct: 179 LVPLGEESQHWLERYLREARPLLAANKPVAAVDGQVPLFIDVSRQPLSRQQFWALVKRYA 238 Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ P + + H LRHSFATHLL++G DLR++Q +LGH LSTTQIYT V ++ + Sbjct: 239 AVAGIDPATVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQH----L 294 Query: 311 MEIYDQTHP 319 +++ HP Sbjct: 295 QKLHASHHP 303 >gi|218710942|ref|YP_002418563.1| site-specific tyrosine recombinase XerC [Vibrio splendidus LGP32] gi|254799361|sp|B7VMD2|XERC_VIBSL RecName: Full=Tyrosine recombinase xerC gi|218323961|emb|CAV20323.1| Integrase/recombinase XerC [Vibrio splendidus LGP32] Length = 310 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/302 (26%), Positives = 148/302 (49%), Gaps = 16/302 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L E+GLS T ++Y+ L + ++ Q+ +R SK + + Sbjct: 24 LRSEKGLSLHTQRNYKQQLETMAAHLV-----TLGLKDWSQVDAAWVRQLASKGMREGMK 78 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S+ LS ++SF +L R T + + +K LP+ L+ + L+D Sbjct: 79 ASSIATRLSSLRSFFDFLVLRGEMTANPAKGVSAPRKQRPLPKNLDVDEVGQLLD----- 133 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 +E + R+ A++ ++YG GLR++E + + ++++ Q +R+ GKGDK R P Sbjct: 134 -VNEDDPLSIRDRAMMEVMYGAGLRLAELVGINLKDVLGRQGEIRVIGKGDKERKAPF-S 191 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 + K ++ + L + LF G ++ Q+ + + + + + H Sbjct: 192 GLAKEWVDKWLKVRGALASPGETALFVSKLGTRISHRSVQKRMEEWGKKQSVASHISPHK 251 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 LRHSFATH+L + +LR++Q +LGH +STTQ+YT+++ ++ + + YDQ HP +K Sbjct: 252 LRHSFATHVLESSQNLRAVQELLGHENISTTQVYTHLDFQH----LAQAYDQAHPRARKK 307 Query: 325 DK 326 +K Sbjct: 308 NK 309 >gi|120600505|ref|YP_965079.1| tyrosine recombinase XerC [Shewanella sp. W3-18-1] gi|146294663|ref|YP_001185087.1| tyrosine recombinase XerC [Shewanella putrefaciens CN-32] gi|166918902|sp|A4YBF5|XERC_SHEPC RecName: Full=Tyrosine recombinase xerC gi|166918903|sp|A1RPD0|XERC_SHESW RecName: Full=Tyrosine recombinase xerC gi|120560598|gb|ABM26525.1| tyrosine recombinase XerC [Shewanella sp. W3-18-1] gi|145566353|gb|ABP77288.1| tyrosine recombinase XerC [Shewanella putrefaciens CN-32] gi|319427899|gb|ADV55973.1| tyrosine recombinase XerC [Shewanella putrefaciens 200] Length = 302 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 86/309 (27%), Positives = 157/309 (50%), Gaps = 20/309 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q++ + L ER LS T+ +Y + + L + +T+ + + + ++ ++K Sbjct: 13 QDYERYLHSERQLSAHTVHNYLYELNRVSTLLP----KDVTLLNVGREHWQQV---LAKL 65 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + RSL LS IK + ++L + + + + K++ LP+ ++ L+ Sbjct: 66 HRKGLSPRSLSLCLSAIKQWGEFLLREGMIAVNPAKGLSAPKQAKPLPKNMDVDSLTHLL 125 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + T + R+ A++ L Y GLR++E +L ++ D +R+ GKG+K R Sbjct: 126 E------IEGTDPLTLRDKAMMELFYSSGLRLAELAALNLSSVQYDLREVRVLGKGNKER 179 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 IVP+ KA LE + +C + LF +G+ L+ Q + + + L + Sbjct: 180 IVPVGSYAIKA-LEAWLVCRQQIPCE-DCALFVTGKGRRLSHRSIQSRMAKWGQEQALSV 237 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 H LRHSFATH+L + DLR++Q +LGH LSTTQIYT+++ ++ + ++YD H Sbjct: 238 RVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQIYTSLDFQH----LAKVYDSAH 293 Query: 319 P-SITQKDK 326 P + Q+DK Sbjct: 294 PRAKKQQDK 302 >gi|104774158|ref|YP_619138.1| site-specific recombinase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514251|ref|YP_813157.1| integrase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122275017|sp|Q04A03|XERC_LACDB RecName: Full=Tyrosine recombinase xerC gi|123378433|sp|Q1G9V2|XERC_LACDA RecName: Full=Tyrosine recombinase xerC gi|103423239|emb|CAI98072.1| Site-specific recombinase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093566|gb|ABJ58719.1| tyrosine recombinase XerC subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 295 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 82/286 (28%), Positives = 141/286 (49%), Gaps = 12/286 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L+ ER S T+ +Y+ D L + +E Q+S ++ ++ Sbjct: 5 EQFLSYLKNERSYSPKTVLAYQKD----LAAAKKFWQENGGFPGWDQISRRDLEIYLLAT 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 QK+ +L R LS +KSF ++L +R + + ++ + LP + + ++ Sbjct: 61 -GQKLASSTLSRKLSSLKSFYRFLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQVI 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 ++ ++ K + RN AI+ L Y G+R+SE L + + + + + GKG+K R Sbjct: 120 RSL-----NDGKPLTVRNRAIVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNKDR 174 Query: 199 IVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 V +K + EY L N +F G+P++ + ++Q+ + GL Sbjct: 175 YVFFDQESKKYLEEYLQAARPSLLKNEPDTGAVFLNKLGRPISSRGIAKAVQQIFQKAGL 234 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 H LRHSFAT +L+NG DLRS+Q +LGH LSTTQIYT+V+ Sbjct: 235 TAGAHPHELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVS 280 >gi|161485706|ref|NP_643858.2| site-specific tyrosine recombinase XerD [Xanthomonas axonopodis pv. citri str. 306] Length = 323 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 92/309 (29%), Positives = 147/309 (47%), Gaps = 23/309 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L E+G+++ TL+SY D L LA + + + + + ++ R Sbjct: 28 ERFLDRFWAEQGVARQTLESYRRD----LEGLARWRDG--AGGGLLGIDRAALFDYLRWR 81 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 RS R LS +++F + ++ + SLP+AL E Q L+ Sbjct: 82 TRANYSPRSTARLLSTLRAFYGLCLRDGARSDDPTALIDPPHLPRSLPKALTESQIEALL 141 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L T R+ A+L L+Y GLR+SE ++L + Q LR+ GKG K R Sbjct: 142 AAPDLDTP-----AGLRDRAMLELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDR 196 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNI-------QLPLFRGIRGKPLNPGVFQRYIRQLR 251 +VPL + + Y L N Q+PLF + +PL+ F +++ Sbjct: 197 LVPLGEESQHWLERYLREARPLLAANKPVAAVDGQVPLFIDVSRQPLSRQQFWALVKRYA 256 Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ P + + H LRHSFATHLL++G DLR++Q +LGH LSTTQIYT V ++ + Sbjct: 257 AVAGIDPATVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQH----L 312 Query: 311 MEIYDQTHP 319 +++ HP Sbjct: 313 QKLHASHHP 321 >gi|325954362|ref|YP_004238022.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922] gi|323436980|gb|ADX67444.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922] Length = 301 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 88/310 (28%), Positives = 155/310 (50%), Gaps = 16/310 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +L L+ E+ S T+++Y D FL +FY E+ + +I + IR+FI Sbjct: 5 QRFLDYLQYEKRYSLHTIKNYRRDLDDFL---SFYQIEESS-DSIEKAEKNHIRSFIISL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALT 136 + I +RS+ R LS +++F YL K T S +L +++LK K +P E Q L Sbjct: 61 SDKNISERSINRKLSSLRTFYIYLIKTGQLTTSPMLQIKSLKTKKEVIIPYTEKEMQRLF 120 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 ++N+ + R+ ++ L Y G+R E + LT + +Q +++ GK +K Sbjct: 121 ELENIF-----PDDFDGIRDRLMMNLFYQTGIRRGELIQLTLPQLRIEQKEIKVLGKRNK 175 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 R++P+ ++ Y + ++ + L LF G+ L + ++ Sbjct: 176 ERVLPIGENLVSEFTRYLKVRK-EVVGSENLTLFIKNNGQALYEKFVYERVNYYLSFITE 234 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FAT LL NG DL +++ ILGH LS+TQIYT+ + +N + ++++ Sbjct: 235 KHKKSPHVLRHTFATQLLENGADLNALKEILGHSSLSSTQIYTHSSIQN----LKKVFNN 290 Query: 317 THPSITQKDK 326 HP +KD+ Sbjct: 291 AHPRGRKKDE 300 >gi|116872710|ref|YP_849491.1| integrase/recombinase XerC [Listeria welshimeri serovar 6b str. SLCC5334] gi|123463735|sp|A0AI80|XERC_LISW6 RecName: Full=Tyrosine recombinase xerC gi|116741588|emb|CAK20712.1| integrase/recombinase XerC [Listeria welshimeri serovar 6b str. SLCC5334] Length = 300 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 83/309 (26%), Positives = 145/309 (46%), Gaps = 21/309 (6%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 K Q +L L ER S T +YE D F FL + I +Q+++ ++R ++ Sbjct: 6 KLEQQFLNYLHSERNYSVNTSTAYENDILDFRRFL-----NEQAISEYQQVTFLDVRIYL 60 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 ++ + + ++ R +S ++SF +L + + +E+ + + K LP+ ++ Sbjct: 61 TELKQKSFSRTTVARKISSLRSFYTFLLRENVISENPFTYVSHAKNQLRLPKFFYSEEME 120 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L V + + + R+ +L +LYG G+R+SE + ++ + I+GKG+ Sbjct: 121 ALFQVVY----EDNETLTLRDRVLLEVLYGTGIRVSECAGILLSDLDTSYQAILIRGKGN 176 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPLNPGVFQRYIRQL 250 K R VP AI +Y L I+ L G PL + + ++ Sbjct: 177 KERYVPFGAYAEDAITDY---LSSRTELMIRFKKEHDSLLINHYGDPLTTRGIRYCLTKI 233 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 L H LRH+FAT LL+NG D+R++Q +LGH LS+TQIYT+V ++ + Sbjct: 234 ISKASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH----L 289 Query: 311 MEIYDQTHP 319 Y + HP Sbjct: 290 KSTYMKHHP 298 >gi|304412533|ref|ZP_07394139.1| tyrosine recombinase XerC [Shewanella baltica OS183] gi|307307192|ref|ZP_07586930.1| tyrosine recombinase XerC [Shewanella baltica BA175] gi|304349175|gb|EFM13587.1| tyrosine recombinase XerC [Shewanella baltica OS183] gi|306910431|gb|EFN40862.1| tyrosine recombinase XerC [Shewanella baltica BA175] Length = 306 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 87/316 (27%), Positives = 153/316 (48%), Gaps = 33/316 (10%) Query: 21 WLQNLE----IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 WLQ E ER LS T+++Y + + L E + + + + + ++ ++ Sbjct: 15 WLQTFERYLSTERQLSAHTVRNYLYELNRGSDLLP----EGVHLLNVSREHWQQV---LA 67 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 K + + RSL LS +K + ++L + + + + K++ LP+ ++ Sbjct: 68 KLHRKGLSPRSLSLCLSAVKQWGEFLLREGVIELNPAKGLSAPKQAKPLPKNIDVDAISH 127 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L+D T + R+ A++ L Y GLR++E +L ++ D +R+ GKG+K Sbjct: 128 LLD------IEGTDPLSLRDKAMMELFYSSGLRLAELAALNLSSVQYDLKEVRVLGKGNK 181 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLR 251 RIVP+ A+L + LN Q+P LF +GK L+ Q + + Sbjct: 182 ERIVPVGRLAIAALLNW-------LNCRKQIPCEDNALFVTEKGKRLSHRSIQARMAKWG 234 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 + L + H LRHSFATH+L DLR++Q +LGH L+TTQIYT+++ ++ + Sbjct: 235 QEQALSVRVHPHKLRHSFATHMLEASADLRAVQELLGHANLATTQIYTSLDFQH----LA 290 Query: 312 EIYDQTHPSITQKDKK 327 ++YD HP + K Sbjct: 291 KVYDNAHPRAKKTQDK 306 >gi|163814162|ref|ZP_02205554.1| hypothetical protein COPEUT_00316 [Coprococcus eutactus ATCC 27759] gi|158450611|gb|EDP27606.1| hypothetical protein COPEUT_00316 [Coprococcus eutactus ATCC 27759] Length = 292 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 77/289 (26%), Positives = 150/289 (51%), Gaps = 18/289 (6%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 S+ T+ SY R + F+A++ ++ + + ++ T I +++ + ++ R+ Sbjct: 19 SENTIASYR---RDLMKFVAYFCDKHL--DRLEDITETYITSYVLDMEKNGMSMATVSRN 73 Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 ++ IKSF +L + +I + N++ K +P L ++ V+ +L +++T Sbjct: 74 IASIKSFYAFLLRERIVDDDPAENIKPPKIVKKVPEILT----ISEVNKLLSQPTNKTPK 129 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211 + R+ A+L LLY G+R++E ++L ++ + GD++R VP+ ++A+ Sbjct: 130 -EIRDKAMLELLYATGIRVTELVTLKLTDVNMKLGFIECHD-GDRVRTVPVAEVAQRALS 187 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 Y D++ LF +G P++ F + I+ G+ T H +RHSFA+ Sbjct: 188 RYITEVRDDMSGGSDY-LFFNCKGAPMSRQGFWKIIKYYAAKAGIDKDITPHMIRHSFAS 246 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIY-TNVNSKNGGDWMMEIYDQTHP 319 H+L+NG D++S+Q +LGH ++TTQIY TN SK + E Y + +P Sbjct: 247 HMLNNGADIKSVQEMLGHVDIATTQIYLTNKQSK-----LKEEYAKAYP 290 >gi|89054975|ref|YP_510426.1| phage integrase [Jannaschia sp. CCS1] gi|88864524|gb|ABD55401.1| phage integrase [Jannaschia sp. CCS1] Length = 304 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/266 (29%), Positives = 134/266 (50%), Gaps = 20/266 (7%) Query: 49 FLAFYTEEKITIQTIRQ------LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102 LA+ + K + ++R+ + A+I+ Q + + R LS +K ++ Sbjct: 29 LLAYGRDLKDAMMSVRKSGGFAGADRAALEAYIAGLEAQGLAAATRARRLSSLKQLYRFA 88 Query: 103 KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162 + ++ L + ++ LP L+ ++ L++ + ++ + RN ++ + Sbjct: 89 HEEGWREDNPTLQITGPARTRKLPGTLSLEEVDALLEASATYGRNDADRL--RNHCLMQI 146 Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222 LY GLR++E +SL + D + L + GKG K R+VPL P R A+ + D L+ Sbjct: 147 LYATGLRVTELVSLPITALRGDPNMLLVLGKGGKERMVPLSPPARTAMAAWLD----HLD 202 Query: 223 LNIQLP--LF----RGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLS 275 + P LF G G L F I++L G+ P T HTLRH+FATHLL Sbjct: 203 ATQEEPRSLFAFPSHGKSGH-LTRVRFFTLIKELSASAGIDPARVTPHTLRHAFATHLLQ 261 Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNV 301 NG DLR+IQ++LGH ++TT+IYT++ Sbjct: 262 NGADLRAIQTLLGHADIATTEIYTHI 287 >gi|304389555|ref|ZP_07371517.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315656798|ref|ZP_07909685.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|304327108|gb|EFL94344.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492753|gb|EFU82357.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 318 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 95/328 (28%), Positives = 156/328 (47%), Gaps = 23/328 (7%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL---AFYTEEK 57 M P+ + ELL Q +L L +ERG S T+ +Y D R+++ FL + ++ Sbjct: 1 MGSRPAPDFMCPELLNP-QPYLDYLAVERGASPHTVAAYTRDLRRYITFLIANGVNSLDE 59 Query: 58 ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117 +T+ + + F + S +R ++ ++S+ +Y + + + + Sbjct: 60 VTLPVLESFARALEAGFGDY---AAVAPSSARRVIASVRSWHRYAYETGVVRANPTKGIA 116 Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 K LP L ++ TL++ S R+ A+L LY G RISEA++L Sbjct: 117 PAKVGAHLPTVLTVEEVQTLLEA----ASAPGDDNALRDRALLEFLYATGARISEAVNLA 172 Query: 178 PQNI-MDDQSTL-RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFR 231 +I +D++ L R+ GKG K R+ +L + K LE Y L L Q +F Sbjct: 173 VDDINLDEEIPLVRLFGKGRKERLS-MLGHLAKDALEAY-LVRVRPRLAEKGRSQGRVFL 230 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291 G+PL+ I+ + + + HTLRH FATHLL G D+R++Q +LGH Sbjct: 231 NTLGRPLSRQSAWAIIQAAAQRAQITVPVGPHTLRHCFATHLLQGGADVRAVQELLGHAS 290 Query: 292 LSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 ++TTQIYT V++ D + E+Y HP Sbjct: 291 VTTTQIYTKVSN----DMLREVYASAHP 314 >gi|206561110|ref|YP_002231875.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia J2315] gi|198037152|emb|CAR53073.1| putative integrase/recombinase [Burkholderia cenocepacia J2315] Length = 316 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 91/323 (28%), Positives = 147/323 (45%), Gaps = 22/323 (6%) Query: 2 EGNNLPEIVSFELLKERQN---WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI 58 E ++ S LL R + + L +E GL++ TL +Y D F +LA Sbjct: 9 EADDDAVAASPALLASRASIDVFCDALWLEHGLARNTLDAYRRDLVLFSQWLA-----AT 63 Query: 59 TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118 + + +I+ R K S R LS + + + + + L + + Sbjct: 64 HAAPLDGADEAMVTGYIAARSDGKA--TSSNRRLSVFRRYYGWAVREHRASADPTLRITS 121 Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178 K++ P L+E Q L+ + T + R+ +L L+Y GLR+SE ++L Sbjct: 122 AKQAARFPSTLSEAQVEALLGAPDIGTP-----LGLRDRTMLELMYASGLRVSELVTLKT 176 Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGK 236 + ++ +R+ GKG K R+VP V +E Y D P L LF RG Sbjct: 177 VEVGLNEGVVRVMGKGSKERLVPF-GEVAHGWIERYLRDARPALLGARAADALFVTARGD 235 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + F I++ + + + HTLRH+FATHLL++G DLR +Q +LGH +STTQ Sbjct: 236 GMTRQQFWNIIKRHAQQADVRAHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQ 295 Query: 297 IYTNVNSKNGGDWMMEIYDQTHP 319 IYT+V + + ++ Q HP Sbjct: 296 IYTHVARER----LKTLHAQHHP 314 >gi|260575109|ref|ZP_05843110.1| integrase family protein [Rhodobacter sp. SW2] gi|259022731|gb|EEW26026.1| integrase family protein [Rhodobacter sp. SW2] Length = 313 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/250 (30%), Positives = 121/250 (48%), Gaps = 24/250 (9%) Query: 67 SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126 S + A++ Q + + R LS I+ ++ + ++ L ++ ++ LP Sbjct: 52 SRATVEAYLVFCGAQGLAAATRARRLSSIRQLYRFAVEEGWRADNPALRLKGPAQAQHLP 111 Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 + L+ + L+ T ARN+A+L LLY G+R+SE + L + D Sbjct: 112 QVLSLAEVERLLQAA--RDKGRTGAEQARNAALLELLYATGMRVSELVGLPVAAVRGDPR 169 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP--------- 237 + ++GKG K R+VPL P R A+ ++ L D + + GKP Sbjct: 170 MILVRGKGGKERMVPLSPPARAALADW--LAQRDTAEAVAVKA-----GKPASKHLFPNR 222 Query: 238 -----LNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291 L VF I+ + G+ P T HTLRH+FATHLL+ G DLR IQ++LGH Sbjct: 223 SAAGHLGREVFYALIKDIAVRAGVDPSKVTPHTLRHAFATHLLAGGADLRVIQTLLGHAD 282 Query: 292 LSTTQIYTNV 301 ++TT+IYT+V Sbjct: 283 IATTEIYTHV 292 >gi|167561800|ref|ZP_02354716.1| site-specific tyrosine recombinase XerD [Burkholderia oklahomensis EO147] Length = 325 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 84/277 (30%), Positives = 132/277 (47%), Gaps = 15/277 (5%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 +E GLS+ TL +Y D + F +LA E + L+ +I+ R K Sbjct: 46 LEHGLSRNTLDAYRRDLQLFAQWLAAQHAENVDHANEAMLT-----GYIAARSDGKA--T 98 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R LS + + + + L + + K++ P L+E Q L+ + T Sbjct: 99 SSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTP 158 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 + R+ +L L+Y GLR+SE +++ + ++ +R+ GKG K R+VP V Sbjct: 159 -----LGLRDRTMLELMYASGLRVSELVTVKSVEVGLNEGVVRVTGKGSKERLVPF-GEV 212 Query: 207 RKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 +E Y D P L LF RG + F I++ + + + HT Sbjct: 213 AHGWIERYLRDGRPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPHT 272 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 LRH+FATHLL++G DLR +Q +LGH +STTQIYT+V Sbjct: 273 LRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 309 >gi|325125940|gb|ADY85270.1| Tyrosine recombinase xerC [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 295 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 82/286 (28%), Positives = 141/286 (49%), Gaps = 12/286 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L+ ER S T+ +Y+ D L + +E Q+S ++ ++ Sbjct: 5 EQFLSYLKNERSYSPKTVLAYQKD----LAATKKFWQENGGFPGWDQISRRDLEIYLLAT 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 QK+ +L R LS +KSF ++L +R + + ++ + LP + + ++ Sbjct: 61 -GQKLASSTLSRKLSSLKSFYRFLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQVI 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 ++ ++ K + RN AI+ L Y G+R+SE L + + + + + GKG+K R Sbjct: 120 RSL-----NDGKPLTVRNRAIVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNKDR 174 Query: 199 IVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 V +K + EY L N +F G+P++ + ++Q+ + GL Sbjct: 175 YVFFDQESKKYLEEYLQAARPSLLKNEPDTGAVFLNKLGRPISSRGIAKAVQQIFQKAGL 234 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 H LRHSFAT +L+NG DLRS+Q +LGH LSTTQIYT+V+ Sbjct: 235 TAGAHPHELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVS 280 >gi|107023497|ref|YP_621824.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia AU 1054] gi|116690579|ref|YP_836202.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia HI2424] gi|170733919|ref|YP_001765866.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia MC0-3] gi|105893686|gb|ABF76851.1| Tyrosine recombinase XerD [Burkholderia cenocepacia AU 1054] gi|116648668|gb|ABK09309.1| tyrosine recombinase XerD [Burkholderia cenocepacia HI2424] gi|169817161|gb|ACA91744.1| tyrosine recombinase XerD [Burkholderia cenocepacia MC0-3] Length = 318 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 86/297 (28%), Positives = 138/297 (46%), Gaps = 19/297 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E GL++ TL +Y D F +LA + + + +I+ R K Sbjct: 37 LWLEHGLARNTLDAYRRDLALFSQWLAATHDAPLD-----SADEAMVTGYIAARSDGKA- 90 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S R LS + + + + + L + + K+ P L+E Q L+ + Sbjct: 91 -TSSNRRLSVFRRYYGWAVREHRASADPTLRITSAKQGARFPSTLSEAQVEALLGAPDIG 149 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 T + R+ +L L+Y GLR+SE ++L + ++ +R+ GKG K R+VP Sbjct: 150 TP-----LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPF-G 203 Query: 205 SVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 V +E Y D P L LF RG + F I++ + + + Sbjct: 204 EVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSP 263 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V + + ++ Q HP Sbjct: 264 HTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARER----LRTLHAQHHP 316 >gi|15835241|ref|NP_297000.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum Nigg] gi|270285413|ref|ZP_06194807.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum Nigg] gi|270289427|ref|ZP_06195729.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum Weiss] gi|301336810|ref|ZP_07225012.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum MopnTet14] gi|34223083|sp|Q9PK47|XERC_CHLMU RecName: Full=Tyrosine recombinase xerC gi|8163270|gb|AAF73578.1| integrase/recombinase, phage integrase family [Chlamydia muridarum Nigg] Length = 315 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 84/249 (33%), Positives = 119/249 (47%), Gaps = 9/249 (3%) Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 IR ++ ++ R+++R LS IKSF K+ K + E+ +R + LP L Sbjct: 71 IRLYLLEQIQTTHSKRTVRRRLSAIKSFAKFCVKNQWIPENPAEMIRGPRLPKELPSPLT 130 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 +Q L L+ L K R+ +L L Y GLRISE +L +I + LRI Sbjct: 131 YEQVLALMSAPDL-----DKVTGFRDRCLLELFYSSGLRISEITALNRSDIDFQSNLLRI 185 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 GKG K RIVP+ + + Y D F GK L+ R +Q Sbjct: 186 CGKGKKERIVPMTKVAVQWLQAYLDHPDRAAVEQDHQACFLNRFGKRLSTRSIDRKFQQY 245 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 GL + T HT+RH+ ATH L G DL++IQ +LGH L TT IYT+V+ K Sbjct: 246 LLKTGLSGTITPHTIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMK----LK 301 Query: 311 MEIYDQTHP 319 +I+D+ HP Sbjct: 302 KQIHDEAHP 310 >gi|295696106|ref|YP_003589344.1| integrase family protein [Bacillus tusciae DSM 2912] gi|295411708|gb|ADG06200.1| integrase family protein [Bacillus tusciae DSM 2912] Length = 304 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 87/305 (28%), Positives = 149/305 (48%), Gaps = 31/305 (10%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 LE ER LS T+++Y D Q L ++ + I L+ IR F+++ + + Sbjct: 19 LESERRLSPRTVRAYMGDVGQLLEWM-----QDQGIGGWDLLTPVRIRDFLAELWDRGLS 73 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 RS+ R LS ++ ++ + ES + + K+ +P ++ ++ L+ + + Sbjct: 74 RRSVARMLSAYRTLYRFFLREDEVRESPLEPVATPKQEKRIPNFMDLEEVFHLLASPDPN 133 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLL 203 T+ + R+ A+L LY G+R+ EA++L ++ M + L I GKG K R V Sbjct: 134 TA-----LGQRDRALLEWLYATGVRVGEAVALRVGDVDMAGRRAL-IHGKGGKERYVLFG 187 Query: 204 PSVRKAILEYYDL--------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQLRRYL 254 S +A+ Y ++ CP + P+F RG L+ +R + R + R Sbjct: 188 RSAARALTRYLEVGWPALAGACPGPGD-----PVFLNYRGGALSDRSVRRIVDRHMARVA 242 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G + H LRH+FATHLL G DLR++Q +LGH L +TQIYT+ + ++++Y Sbjct: 243 GYH-KISPHVLRHTFATHLLDAGADLRAVQELLGHASLRSTQIYTHTTRER----LLQVY 297 Query: 315 DQTHP 319 HP Sbjct: 298 LHAHP 302 >gi|261823389|ref|YP_003261495.1| site-specific tyrosine recombinase XerC [Pectobacterium wasabiae WPP163] gi|261607402|gb|ACX89888.1| tyrosine recombinase XerC [Pectobacterium wasabiae WPP163] Length = 311 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 83/299 (27%), Positives = 148/299 (49%), Gaps = 19/299 (6%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L+ L+ ER LS LTL SY +RQ + + + R+L + +R+ +S+ + Sbjct: 24 LRYLKAERQLSPLTLTSY---SRQLSAVITILSAAGVV--DWRKLDASGVRSVVSRSKRD 78 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 + SL LS ++SFL ++ R + T + + + LP+ ++ + N Sbjct: 79 GLHSASLALRLSALRSFLDWMVSRGVLTANPAKGVSTPRAGRPLPKNMDVDEM-----NR 133 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 LL + + R+ +L ++YG GLR++E + + Q+I + + GKG K R +P Sbjct: 134 LLEIDLDDP-LAVRDRTMLEVMYGAGLRLAELVGMDYQHIDLASGEVWVVGKGSKERKLP 192 Query: 202 LLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 + + + + L F N +F +G+ ++ Q+ + G+ Sbjct: 193 IGKTAVTWLERWLALRELFGPQDNA---VFISNQGRRISMRNVQKRFAEWGVKQGVNSHV 249 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHSFATH+L + GDLR++Q +LGH L+TTQIYT+++ ++ + +YD HP Sbjct: 250 HPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----LASVYDAAHP 304 >gi|229491429|ref|ZP_04385253.1| site-specific tyrosine recombinase XerC [Rhodococcus erythropolis SK121] gi|229321714|gb|EEN87511.1| site-specific tyrosine recombinase XerC [Rhodococcus erythropolis SK121] Length = 308 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 86/319 (26%), Positives = 149/319 (46%), Gaps = 18/319 (5%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 + LP +S L + ++L + RG S+ T+++Y D R L + +E + Sbjct: 3 DALPASLSVHL----DAYAEHLRLSRGRSEHTIRAYVGDARALLTHFSAGSENA----DL 54 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 +L + +R++++ + ++ R S + F +L + + + Sbjct: 55 DRLDLSVMRSWLAAQNAVGTARTTVARRASSARGFTAWLAQTGRISVDPGTRLAAPPARR 114 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 +LP L + QAL +D + + + + R+ I+ LLY G+R+ E L +++ Sbjct: 115 TLPTVLRQSQALDAMDAAE-SGAQQQEPLALRDRLIVELLYSTGIRVGELCGLDVESVDA 173 Query: 184 DQSTLRIQGKGDKIRIVPL-LP--SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240 D+ LR+ GKG+K R VP LP S LE+ P + L G+RG L+ Sbjct: 174 DRRLLRVLGKGNKERSVPYGLPAESALNGWLEHGR--PALCSDRSGRALLLGVRGGRLDQ 231 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + + + + H LRHS ATHLL G DLR +Q +LGH L+TTQ+YT+ Sbjct: 232 RQARSVVHETMAAIPGAPDMGPHGLRHSAATHLLEGGADLRVVQELLGHASLATTQLYTH 291 Query: 301 VNSKNGGDWMMEIYDQTHP 319 V+ + + ++DQ HP Sbjct: 292 VSVER----LRSVHDQAHP 306 >gi|217967906|ref|YP_002353412.1| integrase family protein [Dictyoglomus turgidum DSM 6724] gi|217337005|gb|ACK42798.1| integrase family protein [Dictyoglomus turgidum DSM 6724] Length = 300 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 90/320 (28%), Positives = 154/320 (48%), Gaps = 23/320 (7%) Query: 10 VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69 ++ +L +E +N++ L ER S TL+SY R L F + E+ + R Sbjct: 1 MNLDLKREIENYINYLRFERNYSPNTLRSY---LRDLLDFYKYCKEKDLDFTNKRN---- 53 Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 IR++I + + + R + ++SF +YL + E + + K LP+ L Sbjct: 54 -IRSYIQFIAQKGYKNSTFVRKVISLRSFFEYLLTFEKIKEDLTVFIPTPKIEKKLPQFL 112 Query: 130 NEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 + +D V LL++ I R+ AI+ LY G+R+SE + + ++I + Sbjct: 113 S-------IDEVRKLLNSPSLDNLIGIRDRAIIETLYATGIRVSELVGINEEDINWNYGE 165 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 +R+ GK K R+V + K + Y D L + F +G ++ + I Sbjct: 166 IRVFGKRAKERVVIVGEETLKILQLYKDYVRPKLLKKPEKAFFLNAKGGRISDRGVRMII 225 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 ++ + +S HTLRH+FATHLL G DLR +Q +LGH R+STTQIYT++ + Sbjct: 226 KKYTKEFNKKIS--PHTLRHTFATHLLEGGADLRYVQELLGHVRISTTQIYTHLTT---- 279 Query: 308 DWMMEIYDQTHPSITQKDKK 327 D + Y +HP +K+++ Sbjct: 280 DQIRRTYTVSHPRAIKKERE 299 >gi|317476381|ref|ZP_07935630.1| tyrosine recombinase XerC [Bacteroides eggerthii 1_2_48FAA] gi|316907407|gb|EFV29112.1| tyrosine recombinase XerC [Bacteroides eggerthii 1_2_48FAA] Length = 294 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 84/306 (27%), Positives = 150/306 (49%), Gaps = 23/306 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++L L ER SK T++ Y+ D ++ L + EE + T + IR +I+ Sbjct: 5 DSFLDYLLYERNYSKGTVRYYQAD----ILELQKFGEELLGDLTPSDVDAGLIREWITSL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + ++ R LS ++S+ KYL ++ + + + KK LP L E L+ Sbjct: 61 MDRGCAPNTVNRKLSSVRSYYKYLLRKGMVAADPLQKITGPKKKKPLPVFLREGDVNRLL 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D+V E R+ I+ + Y G+R+SE + L ++I S +++ GK +K R Sbjct: 121 DDVDFGEGFEG----CRDRLIIEMFYVTGMRLSELIGLDDKDIDFSASLIKVTGKRNKQR 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-----FRGIRGKPLNPGVFQRYIRQLRRY 253 ++P +R ++ EY ++ N LP+ F G+ LN + +++ Sbjct: 177 LLPFDEELRCSMQEYVNV------RNQALPVRSDAFFIRKTGERLNRSIVAYIVKRNLSK 230 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 + + H LRH+FAT +L+NG DL SI+ +LGH L+TT++YT+ + + ++ Sbjct: 231 VVTVKKRSPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHTTFEE----LKKV 286 Query: 314 YDQTHP 319 Y+Q HP Sbjct: 287 YNQAHP 292 >gi|146337735|ref|YP_001202783.1| site-specific tyrosine recombinase [Bradyrhizobium sp. ORS278] gi|146190541|emb|CAL74543.1| site-specific tyrosine recombinase [Bradyrhizobium sp. ORS278] Length = 308 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 93/310 (30%), Positives = 150/310 (48%), Gaps = 52/310 (16%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK------ITIQTIRQ-LSYTEIRA 73 +L + E+G + TL +Y D LI L+ + K Q +R L+ ++R Sbjct: 4 FLDMMAAEQGAGQNTLDAYRRD----LIDLSEFLTRKGNGFAAADTQALRDYLANLDLRG 59 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 F S S+ R LS ++ ++L +I ++ + K+ +LP+ L+ Sbjct: 60 FKSS---------SVARRLSAMRHLFRFLLSERIRSDDPAAILSGPKRGRALPKVLS--- 107 Query: 134 ALTLVDNVLLHTSHETKWIDA---------RNSAILYLLYGCGLRISEALSLTPQNIMDD 184 + VD +L ++ DA R +L +LY GLR+SE ++L +D Sbjct: 108 -IGDVDRMLTKAKELSEVADASLSQRLRALRLYCLLEVLYATGLRVSELVALPRTAARND 166 Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGV 242 + ++GKG+K R+VPL + R+A+ +Y + L+ Q P + GK L P Sbjct: 167 ARMIVVRGKGNKERLVPLNQASRQAMADYLAM------LDRQKPHAKASATFGKWLFPSF 220 Query: 243 ----------FQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291 F R +++L GLP + H LRH+FA+HLL NG DLR +Q++LGH Sbjct: 221 GESGHLTRQHFARDLKELAAASGLPARLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTD 280 Query: 292 LSTTQIYTNV 301 +STTQIYT+V Sbjct: 281 ISTTQIYTHV 290 >gi|77359067|ref|YP_338642.1| site-specific recombinase [Pseudoalteromonas haloplanktis TAC125] gi|76873978|emb|CAI85199.1| site-specific recombinase [Pseudoalteromonas haloplanktis TAC125] Length = 315 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 80/306 (26%), Positives = 155/306 (50%), Gaps = 35/306 (11%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L+ ER S T+ Y ++ + ++ ++Q IR + R++++ Sbjct: 27 LKFERQYSAHTVNQYVSQLGFAALYFSKLCDDWFSVQG------EHIRRYSMALRSKQLS 80 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSLPRALNEKQALTLVDN 140 R++ LS I+S K+LK + I +++ N ++ K + LP+ L+ Q L++ Sbjct: 81 GRTISLKLSCIRSLYKFLKAKNIAKQAHYHNPAVGIKGPKFAKPLPKNLDVDQMARLLEI 140 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + + + R+ A++ L+Y GLRISE + Q+I + ++GKG+K R++ Sbjct: 141 P------DDEPLAIRDKAMMELMYSSGLRISELVGANLQDISAANGEILVRGKGNKERLI 194 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL------ 254 P+ A+ ++ + P N + ++ +F + ++ +RQ+R + Sbjct: 195 PVGSKALNALKKWLIIRPQFANPD-EVAVFLSSKKNRIS-------VRQVRLRMQEWGIK 246 Query: 255 -GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ H LRHSFA+H+L + GDLR++Q +LGH LS TQ+YT+++ ++ + ++ Sbjct: 247 QGISSQVHPHKLRHSFASHILESSGDLRAVQELLGHSSLSATQVYTHLDFQH----LAKV 302 Query: 314 YDQTHP 319 YD THP Sbjct: 303 YDNTHP 308 >gi|242279423|ref|YP_002991552.1| tyrosine recombinase XerD [Desulfovibrio salexigens DSM 2638] gi|242122317|gb|ACS80013.1| tyrosine recombinase XerD [Desulfovibrio salexigens DSM 2638] Length = 304 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 84/299 (28%), Positives = 145/299 (48%), Gaps = 16/299 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ L IERGLS+ +L Y D F FL E++ I + + +++ R+ Sbjct: 18 YLEYLLIERGLSENSLSGYLSDLESFQSFL----EDRSA--KIEDATSQTLLLYLTYLRS 71 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + SL R LS ++ F + R E + N K +P L+ ++ Sbjct: 72 KALKSTSLARHLSSLRGFFAFCTSRGFIKEDPATLLENPKLPRKIPEFLSPEEI-----G 126 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 +L T+ + R+ +L LLY G+R+SE ++L ++ L I GKG K R+V Sbjct: 127 RMLALPKLTEKLGFRDRTMLELLYAAGMRVSELINLNIEDFDPQTGVLIIFGKGSKERLV 186 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 P+ + + +Y N ++ +F GK L + I++ G+ S Sbjct: 187 PIHYVAQNFLNQYIKDWRPAFNPKVK-NIFLNRSGKGLTRQGVWKLIKKFALEAGIKRSI 245 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HT RHSFATHLL G DLR++Q +LGH ++ T+IYT++ + +++++ + HP Sbjct: 246 SPHTFRHSFATHLLDGGADLRTVQLLLGHSDINATEIYTHIQAGR----LVQLHKRFHP 300 >gi|325925497|ref|ZP_08186888.1| tyrosine recombinase XerD subunit [Xanthomonas perforans 91-118] gi|325544089|gb|EGD15481.1| tyrosine recombinase XerD subunit [Xanthomonas perforans 91-118] Length = 323 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 91/309 (29%), Positives = 150/309 (48%), Gaps = 23/309 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L E+G+++ TL+SY D L LA + + + + + ++ R Sbjct: 28 ERFLDRFWAEQGVARQTLESYRRD----LEGLARWRDGAHG--GLLGIDRAALFDYLRWR 81 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 RS R LS +++F + + ++ + + SLP+AL E Q + Sbjct: 82 TQANYSPRSTARLLSTLRAFYGLCLRDGVRSDDPTTLIDPPQLPRSLPKALTESQ----I 137 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + +L +T R+ A+L L+Y GLR+SE ++L + Q LR+ GKG K R Sbjct: 138 EALLAAPDVDTP-AGLRDRAMLELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDR 196 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNI-------QLPLFRGIRGKPLNPGVFQRYIRQLR 251 +VPL + + Y L N Q+PLF +PL+ F +++ Sbjct: 197 LVPLGEESQHWLERYLREARPLLAANTPVAAVDGQVPLFIDAARQPLSRQQFWALVKRYA 256 Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ P + + H LRHSFATHLL++G DLR++Q +LGH LSTTQIYT V ++ + Sbjct: 257 AVAGIDPDTVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQH----L 312 Query: 311 MEIYDQTHP 319 +++ HP Sbjct: 313 QKLHASHHP 321 >gi|333029648|ref|ZP_08457709.1| Tyrosine recombinase xerC [Bacteroides coprosuis DSM 18011] gi|332740245|gb|EGJ70727.1| Tyrosine recombinase xerC [Bacteroides coprosuis DSM 18011] Length = 309 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 79/302 (26%), Positives = 147/302 (48%), Gaps = 19/302 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 ++ L ER S T+++Y D QF + F +EE ++++L+ +R+++ Sbjct: 22 FIDYLNYERNYSSKTVKAYRNDIEQFFQDMCFNSEE----CSLKELNVYNVRSWMVSLMD 77 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q S+KR LS ++ F +YL K + + K +LP + K +D Sbjct: 78 QGYSTASVKRKLSSLRVFSRYLLKIGEIKSDKLKLVEGPKSGKNLPEFIQAKD----MDK 133 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 +L E + R+ ++ + Y G+R++E + L ++ +++ GKG+K R++ Sbjct: 134 LLEGEFFEKNFEGFRDKLMIDMFYSTGIRLAELVGLNDSDVDLVSRQIKVLGKGNKERVI 193 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 P S+ +I EY + N +I+ F G + + + ++ + Sbjct: 194 PFGSSLADSICEYLK----ERNTSIENRSGAFFIRSNGLRVYRNLVYKSVQSSLSTISTL 249 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + + H LRHSFAT++L+NG DL+ I+ ILGH LS T++YT+ K + ++Y+Q Sbjct: 250 VKCSPHVLRHSFATNMLNNGADLQVIKEILGHTSLSATEVYTHTTFKE----LKKVYNQA 305 Query: 318 HP 319 HP Sbjct: 306 HP 307 >gi|169629452|ref|YP_001703101.1| site-specific tyrosine recombinase XerD [Mycobacterium abscessus ATCC 19977] gi|169241419|emb|CAM62447.1| Tyrosine recombinase XerD [Mycobacterium abscessus] Length = 315 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 90/313 (28%), Positives = 150/313 (47%), Gaps = 21/313 (6%) Query: 17 ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 E Q++L +L++ERG++ TL SY D R++ LA + KI + ++ T++ F+ Sbjct: 11 EIQSYLDHLDVERGVAANTLSSYRRDLRRYQQHLA---DRKI--DRLAEVCETDVSDFVV 65 Query: 77 KRR-------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 R ++ S R+L ++ ++ + ++ + LP++L Sbjct: 66 TLRRGDPANGVPELSASSAARALIAVRGLHRFAAIEGLAPTDVARAVKPPTPNRRLPKSL 125 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 +Q L++ S +D RN A+L LLY G RISEA+ L ++ ++ Sbjct: 126 TVEQVEALLNAAGGGGSDGP--LDLRNRALLELLYSTGARISEAVGLDVDDVDVQARSVL 183 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LP-LFRGIRGKPLNPGVFQRY 246 + GKG K R+VP+ +A+ Y DL + +P LF RG L+ + Sbjct: 184 LWGKGGKQRLVPVGRPAVEALQAYLVRGRPDLARRGRGGVPALFLNSRGGRLSRQSAWQV 243 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 + + + + HTLRHSFATHLL G D+R +Q +LGH ++TTQIYT V Sbjct: 244 LADAAERAKISAAVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVSA- 302 Query: 307 GDWMMEIYDQTHP 319 + E++ HP Sbjct: 303 ---LREVWAGAHP 312 >gi|76579073|gb|ABA48548.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1710b] Length = 508 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 84/277 (30%), Positives = 134/277 (48%), Gaps = 15/277 (5%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 +E GLS+ TL +Y D + F +LA + ++ S + +I+ R K Sbjct: 229 LEHGLSRNTLDAYRRDLQLFAQWLAARH-----VASVDHASEPTLTEYIAARSDGKAT-- 281 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R LS + + + + L + + K++ P L+E Q L+ + T Sbjct: 282 SSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTP 341 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 + R+ +L L+Y GLR+SE ++L + ++ +R+ GKG K R+VP V Sbjct: 342 -----LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPF-GEV 395 Query: 207 RKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 +E Y D P L LF RG + F I++ + + + + HT Sbjct: 396 AHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHT 455 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 LRH+FATHLL++G DLR +Q +LGH +STTQIYT+V Sbjct: 456 LRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 492 >gi|241766196|ref|ZP_04764098.1| tyrosine recombinase XerD [Acidovorax delafieldii 2AN] gi|241363726|gb|EER59095.1| tyrosine recombinase XerD [Acidovorax delafieldii 2AN] Length = 299 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 80/302 (26%), Positives = 151/302 (50%), Gaps = 17/302 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++ L +E GL++ TL +Y D L A + ++ + + ++A+ ++R Sbjct: 11 TFVDALWLEDGLARNTLAAYRRD----LTLYATWLAQQQPALALDSTAEHHLQAYFAERH 66 Query: 80 TQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q S R L+ ++ + + L++R+I+ + + ++ ++ +P+ L++ Q Sbjct: 67 AQTRAT-SANRRLTVLRRYFHWALRERRISADPTV-RLQAARQPLRVPKTLSQAQV---- 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL+ + R+ +L L+Y GLR++E ++L + + LR+ GKG K R Sbjct: 121 -EALLNAPDVGSALGLRDRTMLELMYASGLRVTELVTLKTYQLGLAEGVLRVMGKGSKER 179 Query: 199 IVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP R I Y ++ L LF RG + +F +++ G+ Sbjct: 180 LVPFGEEARNWIERYLHEARGAILGGQQTDDLFVTHRGAGMTRVMFWVIVKKWAAVAGIT 239 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + + HTLRH+FATHLL++G DLR +Q +LGH +STT IYT+V + + ++++ Sbjct: 240 VPLSPHTLRHAFATHLLNHGADLRVVQLLLGHVDISTTTIYTHVARER----LKALHERH 295 Query: 318 HP 319 HP Sbjct: 296 HP 297 >gi|295133019|ref|YP_003583695.1| tyrosine recombinase XerC [Zunongwangia profunda SM-A87] gi|294981034|gb|ADF51499.1| tyrosine recombinase XerC [Zunongwangia profunda SM-A87] Length = 297 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 84/300 (28%), Positives = 148/300 (49%), Gaps = 22/300 (7%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E+ S TL++YE D F FL + ++ + Y +IR +I + Sbjct: 10 LLLEKNYSLHTLKAYEADLLSFHEFLL----AEFECSDLKNVDYAQIRNWIVSLSESGVS 65 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 +RS+ R +S +KS+ +L+K + S + R LK + L ++ + T+++++ Sbjct: 66 NRSINRKISSLKSYYYFLQKVGELSISPLQKHRPLKMAKKLQVPFSKVEVATVINDI--- 122 Query: 145 TSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 +T + R+ AI+ L Y GLR E ++L ++ + +++ GK +K R +PLL Sbjct: 123 ---DTDSFEGIRDKAIIELFYSAGLRRIELINLGINDLDLARLNIKVLGKRNKERYLPLL 179 Query: 204 PSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 SV K I Y + + P + LF +G ++ + R I + + Sbjct: 180 KSVAKTIELYIEQRSHIVPDTAKTS---RLFISSKGDKMSESLVYRIINTYFSKVSAKVK 236 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H LRHSFATHLL+ G +L +++ +LGH L+ TQIYT+ N + I+ + HP Sbjct: 237 KSPHILRHSFATHLLNEGANLNAVKELLGHSSLAATQIYTH----NSIAELKNIHSKAHP 292 >gi|330993350|ref|ZP_08317285.1| Tyrosine recombinase xerD [Gluconacetobacter sp. SXCC-1] gi|329759380|gb|EGG75889.1| Tyrosine recombinase xerD [Gluconacetobacter sp. SXCC-1] Length = 307 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 95/314 (30%), Positives = 149/314 (47%), Gaps = 40/314 (12%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ ERG + TL +Y R A +T +T + ++RA+++ Sbjct: 9 FLEMQAAERGAALNTLAAY---ARDLADMTAVLHAGGVTARTAGE---ADLRAYLAGLAG 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q + R+ R LS +K + +L + + ++ + + LPR L+E + V+ Sbjct: 63 QGLAARTQARRLSCLKQYFLFLAREGMRPDNPAALLEAPRLDTPLPRFLSEGE----VEA 118 Query: 141 VLLHTSHETKWIDARNS------AILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGK 193 +L + E AR A L +LY GLRISE L+L P+ +D + ++GK Sbjct: 119 LLAACAPEPDATPARQRRLQVARAALEMLYASGLRISELLAL-PRRALDAAPGMMLVRGK 177 Query: 194 GDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRG--KPLNPGVFQRY 246 G + R+VP+ R+A + PF LF G RG +P+ F R Sbjct: 178 GGRERMVPMSARAREAARALMEADAARRSPF---------LFPG-RGVARPMTRQGFDRI 227 Query: 247 IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + + GL P + H LRHSFATHLL++G DLR++Q +LGH ++TTQIYT+V Sbjct: 228 LHDVALRAGLDPARLSPHVLRHSFATHLLAHGADLRALQVLLGHADIATTQIYTHVML-- 285 Query: 306 GGDWMMEIYDQTHP 319 D + E HP Sbjct: 286 --DRLREAVADHHP 297 >gi|291527524|emb|CBK93110.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] Length = 306 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 84/302 (27%), Positives = 153/302 (50%), Gaps = 23/302 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +N+L+ ++ L + TL++Y D RQF E+ +++ I +++ ++ +I+ R Sbjct: 9 ENYLEYCRTQKCLDEKTLKAYRIDLRQF--------SEEPSLEKIIEITTNDLEDYIA-R 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRAL---NEKQA 134 Q+ +++KR ++ IK+F YL+ +++ + ++ + ++ LP+ + ++ Sbjct: 60 LHQQYKPKTVKRKIASIKAFFHYLEYKELLAINPFTKIQVHFREPTILPKIIPLHTVEKF 119 Query: 135 LTLV----DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 LT++ DN + R++A+ LL+ G+RISE SL ++I ++ I Sbjct: 120 LTMIYTQRDNAKTNYQRRNAL---RDAAVSELLFATGMRISELCSLKNEDINLHDGSILI 176 Query: 191 QGKGDKIRIVPL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 GKGDK R + + SV K I EY F + F GKPL+ +R I + Sbjct: 177 YGKGDKERRIHIGNDSVSKIIEEYK--AEFQTEIRSCNHFFANQNGKPLSDQAVRRMINK 234 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 + L T H RH+FAT LL D+R IQ +LGH ++ T+IYT+V + D Sbjct: 235 YCSLADIDLHITPHMFRHTFATSLLEADVDIRYIQEMLGHSSINVTEIYTHVTTAKQRDI 294 Query: 310 MM 311 ++ Sbjct: 295 LI 296 >gi|323466640|gb|ADX70327.1| Integrase/recombinase XerC [Lactobacillus helveticus H10] Length = 302 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 87/286 (30%), Positives = 140/286 (48%), Gaps = 19/286 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++LQN ER S+LT+ SY+ D L+ + +E + + +I+ ++ Sbjct: 13 SYLQN---ERHYSELTISSYQTD----LLEAKKFWQENGGFDGWKNVQERDIQIYLQNLA 65 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRK---ITTESNILNMRNLKKSNSLPRALNEKQALT 136 +K+ S R +S + SF ++L +RK I I R KK LP + Sbjct: 66 DRKLVRSSQARQMSSLHSFFRFLTRRKFIKIDPTQGITLRRGEKK---LPEFFYGNELKQ 122 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 + D++ K + RN A+ L Y G+R+SE +LT + I + T+ + GKG+K Sbjct: 123 VFDSL-----KGNKPLTMRNLALFELFYATGMRVSEVSNLTLRQIDLNLQTILVHGKGNK 177 Query: 197 IRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 R V +K+++ Y D P L + +F G PL+ + +++ G Sbjct: 178 DRYVAFDDHTKKSLVRYLEDARPNLLKDETEQHVFLSNLGNPLSKRGIEYVMQKTFNQAG 237 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + H LRH+FAT +L+NG DLRS+Q +LGH LS TQIYT+V Sbjct: 238 ISGKVHPHELRHTFATAMLNNGADLRSVQELLGHSSLSATQIYTHV 283 >gi|183981830|ref|YP_001850121.1| integrase/recombinase XerC [Mycobacterium marinum M] gi|183175156|gb|ACC40266.1| integrase/recombinase XerC [Mycobacterium marinum M] Length = 302 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 86/304 (28%), Positives = 136/304 (44%), Gaps = 28/304 (9%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L ++ G S T ++Y D R L +LA + +R LS +R++++ Sbjct: 16 LALQCGRSAHTRRAYLGDLRSLLDYLAGRGAD------LRALSLPVLRSWLATAAGAGAA 69 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 +L R S +K+F + +R + ++ K +LP L + QAL + Sbjct: 70 RTTLARRTSAVKAFTAWAVRRGLLATDPAARLQVPKAHRTLPAVLRQDQALAAM-TAAKS 128 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + + + R+ I+ LLY G+R+SE L ++ +R+ GKG+K R P Sbjct: 129 GAQQGDPLALRDRLIVELLYATGIRVSELCGLDIDDVDTGHRLVRVLGKGNKQRTAPFGQ 188 Query: 205 SVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL--------G 255 +A+ + D P L G RG+ L+ +RQ R + G Sbjct: 189 PAAEALQAWLADGRPALATAESGPALLLGARGRRLD-------VRQARTVVHQTVAAVDG 241 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 P H LRHS ATHLL G DLR +Q +LGH L+TTQ+YT+V + ++D Sbjct: 242 AP-DMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSR----LRAVHD 296 Query: 316 QTHP 319 Q HP Sbjct: 297 QAHP 300 >gi|163792809|ref|ZP_02186786.1| integrase/recombinase XerD [alpha proteobacterium BAL199] gi|159182514|gb|EDP67023.1| integrase/recombinase XerD [alpha proteobacterium BAL199] Length = 314 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 86/286 (30%), Positives = 135/286 (47%), Gaps = 14/286 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ + ERG ++ TL +Y D ++L E +++T +RA++S Sbjct: 15 ETFLEMMAAERGAARNTLDAYGRDLMHAELWL---NERGGSLETA---DVDGLRAYLSAA 68 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + R+ R LS + F ++L + + ++ LP+ L+E L+ Sbjct: 69 EAGGVMPRTAARRLSAQRQFFRFLYAEGRRADDPTATLDAPRRGRPLPKILSEADVDALL 128 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D E R +L +LY GLR+SE + L + D L ++GKG K R Sbjct: 129 DAACDRPGPE----GLRLICLLEVLYATGLRVSELVGLPFAAVARDPHVLIVRGKGGKER 184 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF--RGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VPL + AI Y + L LF R +G L F + + + G+ Sbjct: 185 MVPLTAAAMDAIAAYKAVRGVFLTTKASPHLFPSRSAQGH-LTRRRFGQLLDETAILAGI 243 Query: 257 -PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 P + H LRH+FATHLL +G DLRS+Q +LGH +STTQIYT+V Sbjct: 244 DPAKVSPHVLRHAFATHLLDHGADLRSVQQMLGHADISTTQIYTHV 289 >gi|300780929|ref|ZP_07090783.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030] gi|300532636|gb|EFK53697.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030] Length = 294 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 77/291 (26%), Positives = 133/291 (45%), Gaps = 17/291 (5%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 +G S+ T++ Y D R + + + +R +++ Q + ++ Sbjct: 19 KGRSEATVKGYRSDLRTLAEVAPTFDD----------FTLIALRGWLADAMRQGLARSTM 68 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 R + +SF + +R + + + LP + +A LV+ + S Sbjct: 69 ARRTAAARSFSTWAYERGYLDSDVAARLVTPQINRHLPDVVTSSRAGELVEAEINPDSDG 128 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 + AR+ A+L L+Y G+R++E L ++ Q R+ GKG+K R+VP Sbjct: 129 PEA--ARDRAMLELMYATGMRVAELTGLDVDDVDTKQGLARVTGKGNKQRVVPFGERATA 186 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 AI E+ ++ LF G RG ++ +R + + + G + H LRHS Sbjct: 187 AIEEWKTRRTELVSDKSGHALFLGSRGGRIDQRQVRRVVERAAQRTG-DTDLSPHALRHS 245 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 ATH+L G DLR +Q +LGH L TTQIYT+V+++ + +YDQ HP Sbjct: 246 AATHMLEGGADLRVVQELLGHSSLQTTQIYTHVSAQR----LKNVYDQAHP 292 >gi|183982521|ref|YP_001850812.1| integrase/recombinase, XerD [Mycobacterium marinum M] gi|183175847|gb|ACC40957.1| integrase/recombinase, XerD [Mycobacterium marinum M] Length = 313 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 89/313 (28%), Positives = 143/313 (45%), Gaps = 19/313 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF-ISK 77 Q +L +L IERG++ TL SY D R++ L E I + ++ ++ F ++ Sbjct: 11 QGYLDHLAIERGVAANTLSSYRRDLRRYSKHL-----EDRGITDLAKVGEDDVSEFLVAL 65 Query: 78 RRTQK------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131 RR + S R+L ++ ++ + +R LP++L Sbjct: 66 RRGDPESGVLGLSAVSAARALIAVRGLHRFAAAEGLAALDVARAVRPPTPGRRLPKSLTI 125 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 + L L++ + + RN A+L LLY G RISEA+ L +I T+ +Q Sbjct: 126 DEVLALLEGAGGDNPADGP-LTLRNRALLELLYSTGSRISEAVGLDVDDIDTQARTVLLQ 184 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQ 249 GKG K R+VP+ +A+ Y +L + +F RG L+ + ++ Sbjct: 185 GKGGKQRLVPVGRPAVQALDAYLVRGRPELARRGRGTPAIFLNARGGRLSRQSAWQVLQD 244 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 G+ + H LRHSFATHLL G D+R +Q +LGH ++TTQIYT V Sbjct: 245 AAERAGITSGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHA---- 300 Query: 310 MMEIYDQTHPSIT 322 + E++ HP T Sbjct: 301 LREVWAGAHPRAT 313 >gi|126736338|ref|ZP_01752080.1| tyrosine recombinase XerD [Roseobacter sp. CCS2] gi|126714159|gb|EBA11028.1| tyrosine recombinase XerD [Roseobacter sp. CCS2] Length = 313 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 76/250 (30%), Positives = 121/250 (48%), Gaps = 27/250 (10%) Query: 67 SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126 S + +++ + + + R LS IK ++ + ++ + ++ + LP Sbjct: 55 SRDHVESYLIDCEAEGLAKSTRARRLSAIKQLYRFAFEEGWRDDNPAIQIKGPGREQRLP 114 Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 + L+ ++ VD LL + T RN+ ++ LLY G+R++E +SL D Sbjct: 115 KTLSIEE----VDR-LLDAARNTPKEALRNACLMELLYATGMRVTELVSLPVSAARGDPR 169 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 L ++GKGDK R+VPL P R A+ Y L + GKP + +F Sbjct: 170 MLLVRGKGDKERLVPLSPPARAALATY-------LTARDKAEDAGRKDGKPASKFLFPSR 222 Query: 247 IRQ----LRRYLGL-----------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291 + R+ GL P T HTLRH+FATHLL+ G DLRSIQ++LGH Sbjct: 223 GKSGHLTRHRFFGLIKEFAVAGGVSPAKVTPHTLRHAFATHLLAGGADLRSIQTMLGHAD 282 Query: 292 LSTTQIYTNV 301 ++TT+IYT+V Sbjct: 283 VATTEIYTHV 292 >gi|296283728|ref|ZP_06861726.1| integrase [Citromicrobium bathyomarinum JL354] Length = 304 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 86/309 (27%), Positives = 142/309 (45%), Gaps = 30/309 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L L ++RG + TL +Y D + + E T + +L Sbjct: 7 EDFLAALAVDRGAAANTLAAYRRDLEGAVGIVGPL--EDATRTDLARLGAA--------- 55 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + ++ R S ++ F +L+ + +++ + + K SLP+ L+ Q V Sbjct: 56 -WADLAPATVARKASALRQFFGFLEDEGLRSDNPSAALPSPTKRRSLPKILDHAQ----V 110 Query: 139 DNVLLHTSHETKWIDA---RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 + + E + D R A++ LLYG GLR SE ++L + D L I GKG Sbjct: 111 EALFAQAEREAEEGDPAALRLLAMIELLYGSGLRASELVTLPLSAVPRDAPFLTITGKGG 170 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 K R+VPL R + + + P P RGK L + ++ L G Sbjct: 171 KERLVPLGTRARAVLSRWLAVRPEGS------PWLFPSRGKHLTRIRLYQLLKALAERSG 224 Query: 256 L-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 + P + H LRH+FATHLL G DLR++Q++LGH ++TTQIYT+V S ++ + Sbjct: 225 IDPAKISPHVLRHAFATHLLEGGADLRALQTLLGHADIATTQIYTHVESAR----LVALV 280 Query: 315 DQTHPSITQ 323 ++ HP Q Sbjct: 281 NERHPLADQ 289 >gi|260101613|ref|ZP_05751850.1| integrase/recombinase XerC [Lactobacillus helveticus DSM 20075] gi|260084576|gb|EEW68696.1| integrase/recombinase XerC [Lactobacillus helveticus DSM 20075] Length = 302 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 87/286 (30%), Positives = 140/286 (48%), Gaps = 19/286 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++LQN ER S+LT+ SY+ D L+ + +E + + +I+ ++ Sbjct: 13 SYLQN---ERHYSELTISSYQTD----LLEAKKFWQENGGFDGWKNVQERDIQIYLQNLA 65 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRK---ITTESNILNMRNLKKSNSLPRALNEKQALT 136 +K+ S R +S + SF ++L +RK I I R KK LP + Sbjct: 66 DRKLVRSSQARQMSSLHSFFRFLTRRKFIKIDPTQGITLRRGEKK---LPEFFFGNELKQ 122 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 + D++ K + RN A+ L Y G+R+SE +LT + I + T+ + GKG+K Sbjct: 123 VFDSL-----KGNKPLTMRNLALFELFYATGMRVSEVSNLTLRQIDLNLQTILVHGKGNK 177 Query: 197 IRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 R V +K+++ Y D P L + +F G PL+ + +++ G Sbjct: 178 DRYVAFDDHTKKSLVRYLEDARPNLLKDETEQHVFLSNLGNPLSKRGIEYVMQKTFNQAG 237 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + H LRH+FAT +L+NG DLRS+Q +LGH LS TQIYT+V Sbjct: 238 ISGKVHPHELRHTFATAMLNNGADLRSVQELLGHSSLSATQIYTHV 283 >gi|269302896|gb|ACZ32996.1| putative tyrosine recombinase XerC [Chlamydophila pneumoniae LPCoLN] Length = 312 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 89/313 (28%), Positives = 145/313 (46%), Gaps = 22/313 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLA------------FYTEE-KITIQTIRQL 66 ++L L++ + S TL++Y D IFL TE+ K++ Sbjct: 7 SFLDYLKMVKSASPHTLRNYCLDLNGLKIFLEERGNLAPSSPLQLATEKRKVSELPFSLF 66 Query: 67 SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126 + +R +I+K R++KR LS IKSF Y +KI E+ + + LP Sbjct: 67 TKEHVRMYIAKLIENGKAKRTIKRCLSSIKSFAHYCVVQKILLENPAETIHGPRLPKELP 126 Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 + Q VL+ T +K+ R+ ++ L Y GLRISE +++ Q+ Sbjct: 127 SPMTYAQV-----EVLMATPDISKYHGLRDRCLMELFYSSGLRISEIVAVNKQDFDLSTH 181 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 +RI+GKG K RI+P+ + + I Y + +F G+ ++ R Sbjct: 182 LIRIRGKGKKERIIPVTSNAIQWIQTYLNHPDRKRLEKDPQAIFLNRFGRRISTRSIDRS 241 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 ++ R GL T HT+RH+ ATH L +G DL++IQ++LGH L TT +YT V+ K Sbjct: 242 FQEYLRRSGLSGHITPHTIRHTIATHWLESGMDLKTIQALLGHSSLETTTVYTQVSVK-- 299 Query: 307 GDWMMEIYDQTHP 319 + + + HP Sbjct: 300 --LKKQTHQEAHP 310 >gi|118617636|ref|YP_905968.1| site-specific tyrosine recombinase XerC [Mycobacterium ulcerans Agy99] gi|118569746|gb|ABL04497.1| integrase/recombinase XerC [Mycobacterium ulcerans Agy99] Length = 302 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 86/304 (28%), Positives = 137/304 (45%), Gaps = 28/304 (9%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L ++ G S T ++Y D R L +LA + +R LS +R++++ Sbjct: 16 LALQCGRSAHTRRAYLGDLRSLLDYLAGRGAD------LRALSLPVLRSWLATAAGAGAA 69 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 +L R S +K+F + +R + ++ K +LP L + QAL + Sbjct: 70 RTTLARRTSAVKAFTAWAVRRGLLATDPAARLQVPKAHRTLPAVLRQDQALAAM-TAAKS 128 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 ++ + + R+ I+ LLY G+R+SE L ++ +R+ GKG+K R P Sbjct: 129 SAQQGDPLALRDRLIVELLYATGIRVSELRGLDIDDVDTGHRLVRVLGKGNKQRTAPFGQ 188 Query: 205 SVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL--------G 255 +A+ + D P L G RG+ L+ +RQ R + G Sbjct: 189 PAAEALQAWLADGRPALATAESGPALLLGARGRRLD-------VRQARTVVHQTIAAVDG 241 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 P H LRHS ATHLL G DLR +Q +LGH L+TTQ+YT+V + ++D Sbjct: 242 AP-DMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSR----LRAVHD 296 Query: 316 QTHP 319 Q HP Sbjct: 297 QAHP 300 >gi|323495291|ref|ZP_08100372.1| site-specific tyrosine recombinase XerC [Vibrio brasiliensis LMG 20546] gi|323310468|gb|EGA63651.1| site-specific tyrosine recombinase XerC [Vibrio brasiliensis LMG 20546] Length = 308 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 84/313 (26%), Positives = 157/313 (50%), Gaps = 16/313 (5%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 L K + + + L E+GLS T ++Y +Q L +A + + ++ +Q+ +R Sbjct: 12 LQKPLERFYEYLRSEKGLSLHTQRNY----KQQLETMAHHLVH-LGLKEWQQVDAGWVRQ 66 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 SK + S+ LS ++SF +L R + + +K LP+ L+ + Sbjct: 67 IASKGMRDGMKASSIATRLSSLRSFFDFLILRGEMAANPAKGVSAPRKKRPLPKNLDVDE 126 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L++ +E + R+ A++ L+YG GLR++E +S+ +++ LR+ GK Sbjct: 127 VGQLLE------VNEDDPLAVRDRAMMELMYGAGLRLAELVSVNVKDVSLSSGELRVIGK 180 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 GDK R VP + + ++ + L + + LF G ++ Q+ + + + Sbjct: 181 GDKERKVPFAGMATEWVTKWLKVRS-SLAKSDETALFVSKLGVRISHRNVQKRMAEWGQK 239 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 + + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ ++ + ++ Sbjct: 240 QSVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQH----LADV 295 Query: 314 YDQTHPSITQKDK 326 YDQ HP +K K Sbjct: 296 YDQAHPRAKKKGK 308 >gi|296532542|ref|ZP_06895255.1| integrase/recombinase XerD [Roseomonas cervicalis ATCC 49957] gi|296267143|gb|EFH13055.1| integrase/recombinase XerD [Roseomonas cervicalis ATCC 49957] Length = 294 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 88/312 (28%), Positives = 142/312 (45%), Gaps = 40/312 (12%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ L ERG ++ TL +Y D F + T+ +R +++ Sbjct: 6 EAFLEMLAAERGAARNTLAAYRADLEDVAGF------ARRQGGTLAGADTELLRRYLAGL 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + R+ R LS ++ F ++L + + + + ++ + +P+AL ++ L+ Sbjct: 60 TDAGLSPRTAARRLSALRQFYRFLAAEGVRADDPTEILDSPRQPSRVPKALRREEVEALL 119 Query: 139 DNVLLHTSHETKWIDARN---SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 D T+ R +A+L LLY GLR SE +SL + + D + ++GKG+ Sbjct: 120 DAA-------TRLPGKRGPLATALLELLYCSGLRASELVSLPARALAQDSPLVLVRGKGN 172 Query: 196 KIRIVPLLPSVRKAILEYYD-------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 K R+VP+ R A L D L P RG G L ++ Sbjct: 173 KERLVPISERARLAALSLQDPKKPSKWLFPS-----------RGAAGH-LTRQSLLLLVK 220 Query: 249 QLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 Q GL P + H LRHSFATHLL G DLR++Q +LGH ++TTQIYT V + Sbjct: 221 QAALAAGLDPAKLSPHVLRHSFATHLLEGGADLRALQMLLGHADIATTQIYTRVLEER-- 278 Query: 308 DWMMEIYDQTHP 319 + +I + HP Sbjct: 279 --LRQIVETHHP 288 >gi|152992017|ref|YP_001357738.1| site-specific DNA tyrosine recombinase XerD [Sulfurovum sp. NBC37-1] gi|151423878|dbj|BAF71381.1| site-specific DNA tyrosine recombinase XerD [Sulfurovum sp. NBC37-1] Length = 271 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 89/303 (29%), Positives = 145/303 (47%), Gaps = 49/303 (16%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 + + + + L LT+ SY D RQ E+ + + +L T++ F+S + Sbjct: 10 EYISVTKALDALTISSYLGDLRQL---------EEAVQKPLTKLDTTDVLKFLSTFENK- 59 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ---ALTLVD 139 R+L R LS I +F + + T E + M + K+ LP+ L+ ++ ++L+D Sbjct: 60 ---RTLNRKLSSINTFFHFCHLQNFTHEKIRIPMAKVPKN--LPKYLSPEEIMEGISLID 114 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + I R+ A++ LY G RISEAL+ +I++ +R KG+K R+ Sbjct: 115 R--------SSTIGLRDYALILFLYASGCRISEALNAQRSDILEGWLKIRF-AKGEKERV 165 Query: 200 VPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 VPL P +A+ Y D+ L LN + I + +++YLG+ Sbjct: 166 VPLAPIAIEAVEAYLQAQDMSSSYLWLNYRAEQLSRISAYKI-----------VKKYLGV 214 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRHSFA+ L+ G DLR +Q +LGH L TTQIYT++ +N D M+ Sbjct: 215 ----SPHVLRHSFASSLIIGGADLRVVQELLGHSSLETTQIYTHIQKQNLQDTMI----H 266 Query: 317 THP 319 HP Sbjct: 267 YHP 269 >gi|332974597|gb|EGK11517.1| site-specific tyrosine recombinase XerC [Kingella kingae ATCC 23330] Length = 302 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 86/253 (33%), Positives = 121/253 (47%), Gaps = 18/253 (7%) Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q + SL R L+ K + YL S I +R K LPRA++ + Sbjct: 62 QGLNASSLARKLTVWKQYALYLCDIGYWEHSPIATLRAPKLPQRLPRAIDREPL-----G 116 Query: 141 VLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 LL+ S E+ + R+ AI+ L YG GLR+SE +L +I + +QGKG+K R Sbjct: 117 ALLNQSPESDDTLAIRDHAIVELFYGSGLRLSELRALNLHDIELTAGWVSVQGKGNKQRQ 176 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 VPL A+ + CP N + LF G G L+ + G Sbjct: 177 VPLTRHCIDALHTWLANCPAQ---NGETALFTGRYGSRLSTRQIASRLAFWAEQRGSLQH 233 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T H LRHSFA HLL DLR++Q +LGH LS+TQIYT ++ D + ++YDQ HP Sbjct: 234 ITPHMLRHSFAGHLLQASQDLRAVQDLLGHSSLSSTQIYTKLDL----DHLAQVYDQAHP 289 Query: 320 -----SITQKDKK 327 + + KD+K Sbjct: 290 RARRQTTSTKDEK 302 >gi|194364318|ref|YP_002026928.1| site-specific tyrosine recombinase XerD [Stenotrophomonas maltophilia R551-3] gi|194347122|gb|ACF50245.1| tyrosine recombinase XerD [Stenotrophomonas maltophilia R551-3] Length = 325 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 98/325 (30%), Positives = 155/325 (47%), Gaps = 25/325 (7%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 LPE+ + + L+ Q +L + E GL++ TL SY D L LA +T+ + + Sbjct: 15 QQLPELRADDSLRI-QRFLDAIWAENGLARATLDSYRRD----LEGLARWTDGREG--GL 67 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 + + +++ R RS R LS +++F +R +E + K Sbjct: 68 AGIERPGLFDYLAWRTRHGWSPRSNARLLSALRAFFADGVRRGDRSEDPSALLDPPKLPR 127 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 LP+AL E Q +D +L ++ + R+ A+L L+Y GLR+SE + L + Sbjct: 128 LLPKALAESQ----IDALLAAPDIDSP-LGLRDRAMLELMYAAGLRVSELVLLPATAVNL 182 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN--------LNIQLPLFRGIRG 235 Q LR+ GKG K R+VPL + + Y L + Q PLF Sbjct: 183 RQGVLRVTGKGSKERLVPLGEESQHWLERYLQQSRPQLVGKGKVQALADGQTPLFIEPTL 242 Query: 236 KPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 L F +++ + G+ P + H LRHSFATHLL+ G DLR++Q +LGH LST Sbjct: 243 HALTRQAFWHLVKRHAQVAGIDPARISPHALRHSFATHLLNRGADLRALQMLLGHSSLST 302 Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHP 319 TQIYT V ++ + +++ + HP Sbjct: 303 TQIYTLVAREH----LQKLHARHHP 323 >gi|298206605|ref|YP_003714784.1| putative site-specific recombinase [Croceibacter atlanticus HTCC2559] gi|83849235|gb|EAP87103.1| putative site-specific recombinase [Croceibacter atlanticus HTCC2559] Length = 295 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 79/299 (26%), Positives = 150/299 (50%), Gaps = 14/299 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L +E+ S T+ +Y D L+ L+ + + + +I + Y IR++I Sbjct: 7 FLDYLRLEKKYSIHTINAYNND----LVALSDFVSREFSETSINNIPYALIRSWIISLVD 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 I +R++ R +S +KS+ +L+K + S ++ ++LK L ++K+ ++ Sbjct: 63 SGISNRTINRKVSSLKSYYSFLQKIEELEVSPLIKHKSLKVEKRLQVPFSKKEVSDVLSG 122 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 L++ + D R+ AI+ L Y G+R SE ++L +I +++ GK +K RI+ Sbjct: 123 FTLNS-----FEDYRDKAIVELFYSTGMRRSELINLKLSDINIANHYVKVLGKRNKERII 177 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 PL+ SV + +Y+++ + + + +F + + + R I + + Sbjct: 178 PLIESVSLTLRQYFEIKDAEFKESSKW-IFVTSKNDKVYETLVYRIINNYFSKVSSKIKK 236 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H LRHSFATHLL G +L +++ +LGH L+ TQ+YTN N + Y +HP Sbjct: 237 SPHLLRHSFATHLLGEGANLNAVKDLLGHSSLAATQVYTN----NDIAVIKRAYSASHP 291 >gi|297748477|gb|ADI51023.1| hypothetical protein CTDEC_0347 [Chlamydia trachomatis D-EC] gi|297749357|gb|ADI52035.1| hypothetical protein CTDLC_0347 [Chlamydia trachomatis D-LC] Length = 317 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 83/249 (33%), Positives = 121/249 (48%), Gaps = 9/249 (3%) Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 IR ++ ++ R+++R LS IKSF ++ K ++ E+ +R + LP L Sbjct: 73 IRLYLLEQIQTHHSKRTVRRRLSAIKSFARFCVKNQLIPENPAEMIRGPRLPQELPSPLT 132 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 +Q L L+ L K R+ +L L Y GLRISE +L +I L I Sbjct: 133 YEQVLALMAAPEL-----DKVTGFRDRCLLELFYSSGLRISEITALNRADIDFQSHLLHI 187 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 +GKG K RIVP+ + + +Y + F GK L+ R +Q Sbjct: 188 RGKGKKERIVPMTKVAVQWLQDYLNHPDRASVEQDHQACFLNRFGKRLSTRSIDRKFQQY 247 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 GL S T HT+RH+ ATH L G DL++IQ +LGH L TT IYT+V+ K Sbjct: 248 LLKTGLSGSITPHTIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMK----LK 303 Query: 311 MEIYDQTHP 319 +I+D+THP Sbjct: 304 KQIHDETHP 312 >gi|54288326|gb|AAV31614.1| predicted site-specific recombinase [uncultured alpha proteobacterium EBAC2C11] Length = 315 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 87/312 (27%), Positives = 152/312 (48%), Gaps = 20/312 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +LQ + + S TL +Y D I L + +T+ ++R I Sbjct: 20 GFLQAISAMKAASVNTLSAYRRDLLDCQIGL------ETRAKTLTNCDMDDLRGVIFWWH 73 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + + RS+ R LS ++ F+ + + + ++ + N S P++L+E + + L+ Sbjct: 74 QRDLKPRSVARRLSALRQFMGWAVEDGVRQDNPTTWLDNPSLPMSAPKSLSEVEIIQLLK 133 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + + E + R A+L +LY GLR+SE +SL + T+ ++GKG + R+ Sbjct: 134 ---MAKTLEPESASLRALAMLEILYATGLRVSELVSLLVVQFRRNPQTILVKGKGGRERL 190 Query: 200 VPLLPSVRKAI---LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 VPL + R A +E D P + + P+ RG G P++ R +++L + Sbjct: 191 VPLGETARLAAVRWIECRDSNPAFVQSDYMFPV-RG--GGPMSRHQLARLLKKLAVAADI 247 Query: 257 PLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + H LRHSFATH+L+ G DLRS+QS+LGH +STTQIYT+ + + + Sbjct: 248 EVGRVSPHKLRHSFATHMLNRGADLRSLQSLLGHADISTTQIYTSSRPER----LAGLVT 303 Query: 316 QTHPSITQKDKK 327 HP +Q+ + Sbjct: 304 SAHPLASQRQDR 315 >gi|227539590|ref|ZP_03969639.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC 33300] gi|227240503|gb|EEI90518.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC 33300] Length = 293 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 87/309 (28%), Positives = 154/309 (49%), Gaps = 27/309 (8%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 +Q +L L E+ S T+++Y T + +F F ++ + + + + IR ++S Sbjct: 3 QQRFLNFLRFEKRYSNHTIEAY---THELNVFFTFLQDQGVPEE---EADHRVIRLYLSH 56 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 + S+ RS+S ++++ K+L++ +T ++ + ++ LK LP + + + + L Sbjct: 57 LMEEGRQATSVNRSISALRTYYKFLQRESLTDQNPLTLIKALKTPKKLPSVMEKDKMVGL 116 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 +D + + D R+ +L LL+G G+R++E L + +I + I GK +K Sbjct: 117 LDQM---EGAVDSFTDERDYLVLELLFGTGIRLTELLQIKITDIDFYNKNILILGKRNKE 173 Query: 198 RIVPL---LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 R+VP+ L K ++ D D N L GK P + R + RYL Sbjct: 174 RLVPVNHTLLEKLKIYIQQLDNQKID---NKTAFLIVTKEGKQAYPKMIYRIVH---RYL 227 Query: 255 GLPLST----TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 L +ST + H LRH+FAT LL NG DL +I+ +LGH L+ TQ+YT+ N + + Sbjct: 228 SL-ISTQRKKSPHVLRHTFATALLDNGADLNAIKELLGHAGLAATQVYTH----NSVERL 282 Query: 311 MEIYDQTHP 319 +Y Q HP Sbjct: 283 KSVYKQAHP 291 >gi|254796542|ref|YP_003081378.1| tyrosine recombinase XerD [Neorickettsia risticii str. Illinois] gi|254589779|gb|ACT69141.1| tyrosine recombinase XerD [Neorickettsia risticii str. Illinois] Length = 301 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 84/290 (28%), Positives = 152/290 (52%), Gaps = 24/290 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ + +ER + T+ SY D R FL + ++ S ++ +I+ Sbjct: 10 EQFLEKILVERNATLNTISSYRTDLRLLGAFLK--------KKGLKDASKEDLYGYIADL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R Q++ + +++R + + F +L KI++ + + KK+ LPR L +++ L+L+ Sbjct: 62 RAQQLSNATIRRKTATFRQFFSFLYSEKISSGNPAQTLELPKKTLVLPRYLTKEEVLSLL 121 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGD 195 L T R AIL +LY G+R+SE +++ +I ++ Q + I GKG Sbjct: 122 --TFLETGQPATL---RLYAILEILYSSGMRVSELINMKISDIRPLLNGQQHIIIVGKGR 176 Query: 196 KIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 K RI+P +KAI L+ Y L + N P G + +P++ + +++L Sbjct: 177 KERILPF---SKKAIQVLKLY-LTSYQSNSPWLFP-GAGRKDRPMSRQRLGQLLKELALK 231 Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + P + H +RHSFATHLL NG D++ +Q +LGH +++TTQIYT+++ Sbjct: 232 CSIDPKRISPHVIRHSFATHLLDNGMDIKVVQDLLGHAQITTTQIYTHIS 281 >gi|206895374|ref|YP_002247059.1| tyrosine recombinase XerC [Coprothermobacter proteolyticus DSM 5265] gi|206737991|gb|ACI17069.1| tyrosine recombinase XerC [Coprothermobacter proteolyticus DSM 5265] Length = 286 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 92/293 (31%), Positives = 147/293 (50%), Gaps = 38/293 (12%) Query: 19 QNW-------LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71 +NW L LE G S+ TL++Y D +Q+ +F L + Sbjct: 4 ENWAELLNQFLNTLEAS-GYSEHTLKAYYVDLKQYFMFTT-------------SLDQKTV 49 Query: 72 RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131 ++ + + SL R LS ++ F +LKK+ E I+ + K +PR + Sbjct: 50 DDYLMHLSRKGMAPTSLNRFLSSLRKFCSFLKKQGY--EMPIMELSGFKTGLKVPRVV-- 105 Query: 132 KQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 L D++ LL T I+ R+ A+++ L G G RISEALSL ++I ++ + Sbjct: 106 -----LRDDISKLLELPENTP-IELRDKALVWFLLGTGTRISEALSLKVEDIDFRTASCQ 159 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 + GKG+K R V +PS +L+ Y + F+L + PLF ++G+ L + + + Sbjct: 160 VLGKGNKKRTV-YIPSKALKLLKRY-IEVFNLT---EGPLFLNMQGQGLTDRGARYILHK 214 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + + GL HTLRH+FAT+LL G +LR IQ +LGH L +TQIYT+V+ Sbjct: 215 ISKKYGLRDLVHPHTLRHTFATNLLEEGANLREIQELLGHSSLRSTQIYTHVS 267 >gi|91974776|ref|YP_567435.1| tyrosine recombinase XerD [Rhodopseudomonas palustris BisB5] gi|91681232|gb|ABE37534.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris BisB5] Length = 351 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 86/299 (28%), Positives = 137/299 (45%), Gaps = 28/299 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L + E+G S T+ +Y D L L+ Y + ++I +R +++ Sbjct: 45 FLDMIAAEQGASANTIDAYRRD----LADLSHYLTR--SRKSIASADTEALRGYLADLDA 98 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + S+ R LS ++ ++L +I + + K+ LP+ L+ + VD Sbjct: 99 RGFKSSSVARRLSALRHLFRFLLSERIRVDDPAAILSGPKRGRGLPKVLS----IADVDR 154 Query: 141 VLLHTSHETKWID-------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 +L + + + D AR +L +LY GLR+SE +SL D + ++GK Sbjct: 155 LLGYARQQAEAADGAGGVRAARLYCLLEVLYATGLRVSELVSLPSSAARGDARMIVVRGK 214 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV----------F 243 GDK R+VPL S ++A+ Y K L P F Sbjct: 215 GDKERLVPLNHSAKQAMTRYLATAAAAEKAAATATKAGSKGSKWLFPSFGESGHLTRQHF 274 Query: 244 QRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 R ++ L GL P + H LRH+FA+HLL NG DLR +Q++LGH +STTQIYT+V Sbjct: 275 ARDLKDLAGRAGLSPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHV 333 >gi|15605070|ref|NP_219854.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis D/UW-3/CX] gi|76789073|ref|YP_328159.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis A/HAR-13] gi|166154559|ref|YP_001654677.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis 434/Bu] gi|166155434|ref|YP_001653689.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|237802772|ref|YP_002887966.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis B/Jali20/OT] gi|237804694|ref|YP_002888848.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis B/TZ1A828/OT] gi|255348711|ref|ZP_05380718.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis 70] gi|255503251|ref|ZP_05381641.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis 70s] gi|255506929|ref|ZP_05382568.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis D(s)2923] gi|301335822|ref|ZP_07224066.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis L2tet1] gi|34222768|sp|O84351|XERC_CHLTR RecName: Full=Tyrosine recombinase xerC gi|123606950|sp|Q3KM11|XERC_CHLTA RecName: Full=Tyrosine recombinase xerC gi|254799329|sp|B0B7R6|XERC_CHLT2 RecName: Full=Tyrosine recombinase xerC gi|254799330|sp|B0BBY1|XERC_CHLTB RecName: Full=Tyrosine recombinase xerC gi|3328768|gb|AAC67942.1| Integrase/recombinase [Chlamydia trachomatis D/UW-3/CX] gi|76167603|gb|AAX50611.1| DNA integration/recombination/inversion protein [Chlamydia trachomatis A/HAR-13] gi|165930547|emb|CAP04042.1| DNA recombination protein [Chlamydia trachomatis 434/Bu] gi|165931422|emb|CAP06996.1| DNA recombination protein [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|231272994|emb|CAX09906.1| DNA recombination protein [Chlamydia trachomatis B/TZ1A828/OT] gi|231274006|emb|CAX10799.1| DNA recombination protein [Chlamydia trachomatis B/Jali20/OT] gi|289525388|emb|CBJ14865.1| DNA recombination protein [Chlamydia trachomatis Sweden2] gi|296434940|gb|ADH17118.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis E/150] gi|296435866|gb|ADH18040.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis G/9768] gi|296436792|gb|ADH18962.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis G/11222] gi|296437726|gb|ADH19887.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis G/11074] gi|296438660|gb|ADH20813.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis E/11023] gi|297140225|gb|ADH96983.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis G/9301] Length = 315 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 83/249 (33%), Positives = 121/249 (48%), Gaps = 9/249 (3%) Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 IR ++ ++ R+++R LS IKSF ++ K ++ E+ +R + LP L Sbjct: 71 IRLYLLEQIQTHHSKRTVRRRLSAIKSFARFCVKNQLIPENPAEMIRGPRLPQELPSPLT 130 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 +Q L L+ L K R+ +L L Y GLRISE +L +I L I Sbjct: 131 YEQVLALMAAPEL-----DKVTGFRDRCLLELFYSSGLRISEITALNRADIDFQSHLLHI 185 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 +GKG K RIVP+ + + +Y + F GK L+ R +Q Sbjct: 186 RGKGKKERIVPMTKVAVQWLQDYLNHPDRASVEQDHQACFLNRFGKRLSTRSIDRKFQQY 245 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 GL S T HT+RH+ ATH L G DL++IQ +LGH L TT IYT+V+ K Sbjct: 246 LLKTGLSGSITPHTIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMK----LK 301 Query: 311 MEIYDQTHP 319 +I+D+THP Sbjct: 302 KQIHDETHP 310 >gi|197104212|ref|YP_002129589.1| probable integrase/recombinase DNA recombination protein [Phenylobacterium zucineum HLK1] gi|196477632|gb|ACG77160.1| probable integrase/recombinase DNA recombination protein [Phenylobacterium zucineum HLK1] Length = 305 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 86/307 (28%), Positives = 144/307 (46%), Gaps = 21/307 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ + +ER ++ TL +Y D FLA + + + ++ A+ + Sbjct: 10 EAFLEMMAVERAAARNTLSAYGRDLADAAGFLAGLGRD------LSDATAEDVEAYFADL 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + + R + ++ F +++ + + KK SLP+ L+ ++ + Sbjct: 64 GARGLSAATAARRRAAVRQFYRFVLGEGWRGDDPSRRVEAPKKGRSLPKVLSREE----M 119 Query: 139 DNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 D ++ A R + ++ L Y GLRISE LT + D + L ++GKG K Sbjct: 120 DRLIAAAGARDGASHALRLACMVELAYASGLRISELTGLTLAALARDPAYLIVKGKGGKE 179 Query: 198 RIVPLLPSVRKAILEYYDLCPFDL----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 R+ PL R A+ Y ++ P L N L RG +G L P F + + + Sbjct: 180 RLAPLNEPARAAVKAYLEVRPAFLPKGDTANPWLFPSRG-KGGRLTPRRFAQLLDEAAAD 238 Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 G+ P + H LRH+FATHLL G DLR +Q +LGH ++TTQIYT+V S D + E Sbjct: 239 AGIDPGRVSPHVLRHAFATHLLEGGADLRVVQKLLGHADIATTQIYTHVAS----DRLSE 294 Query: 313 IYDQTHP 319 + HP Sbjct: 295 VVRSKHP 301 >gi|254293147|ref|YP_003059170.1| integrase family protein [Hirschia baltica ATCC 49814] gi|254041678|gb|ACT58473.1| integrase family protein [Hirschia baltica ATCC 49814] Length = 308 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 93/310 (30%), Positives = 149/310 (48%), Gaps = 30/310 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ + RG S+ TL +Y D FLA + + LS A++ + Sbjct: 13 FLEMMSASRGASQNTLDAYRRDLSDASEFLA--DKGGLVGANSENLS-----AYMRDLDS 65 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + + R LS +KSF K+ + + + + ++P L++++ + L+ Sbjct: 66 RGMAKSTAARRLSSLKSFFKFELEEGEREDDPTSRLDGPQIIRNIPDVLSKEEVVALI-- 123 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-LRIQGKGDKIRI 199 + + + D R+ IL LLY GLR SEA L ++ + T L I+GKGDK R+ Sbjct: 124 ---NAADGDEPSDIRDRCILELLYSAGLRASEACELPMSSLPRGKDTALIIRGKGDKDRL 180 Query: 200 VPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVF-QRYIRQLRRYL 254 PL R A+ +++ + P + I RGK G F +R + Q+ L Sbjct: 181 TPLGKPARDALEQWFSVREKFLPKNETRKIADKYVFPSRGKT---GHFTRRRLAQILENL 237 Query: 255 GL-----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 P T H LRH+FATHLLS G DLR++Q +LGH +STTQIYT+V + D Sbjct: 238 ATKAAISPKRVTPHALRHAFATHLLSGGADLRAVQMLLGHADISTTQIYTHVMT----DE 293 Query: 310 MMEIYDQTHP 319 + ++ + HP Sbjct: 294 LQKLLEAAHP 303 >gi|225164361|ref|ZP_03726626.1| integrase family protein [Opitutaceae bacterium TAV2] gi|224801041|gb|EEG19372.1| integrase family protein [Opitutaceae bacterium TAV2] Length = 329 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 98/320 (30%), Positives = 153/320 (47%), Gaps = 41/320 (12%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAF-----YTEEKITIQTIRQLSYTEIRAFI 75 +L L ER S T+++Y F +L E +L+ ++R F+ Sbjct: 28 FLDYLARERRYSVYTVRNYRQAFEDFYRWLVSSGLRDAANESAASLAPDKLTPRDLRDFV 87 Query: 76 --SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 +RR + R+L +SG++SF KY + + + ++ + K LP+ L E+Q Sbjct: 88 IEGQRRFDR---RTLHNHVSGLRSFYKYWLRHGRVSRNPLVGLALPKLEKRLPKFLTEQQ 144 Query: 134 -------ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 L+DNV T T W R+ + LLYG GLR+SE +L I Sbjct: 145 MKLLLSGPQRLLDNVADITPF-TAW---RDRLAMELLYGGGLRVSELTALDYGQIDFTSG 200 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 R+ GKG K R+ PL ++++ + + + + P+ + P + Sbjct: 201 VARVLGKGRKERLCPLGKVALAVLVKWKN--EYARDTSPAAPVL-------VTPEHERMP 251 Query: 247 IRQ----LRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 +RQ L+RYL GLP + H LRHS+ATHLL+ G DLR +Q +LGH L+TTQIYT Sbjct: 252 VRQVQLMLKRYLALAGLPTDLSPHKLRHSYATHLLNAGADLRLVQELLGHASLNTTQIYT 311 Query: 300 NVNSKNGGDWMMEIYDQTHP 319 +V+ + +IYD+ HP Sbjct: 312 HVSIAR----LRDIYDKAHP 327 >gi|167627355|ref|YP_001677855.1| phage integrase family protein [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597356|gb|ABZ87354.1| phage integrase family protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 293 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 87/312 (27%), Positives = 149/312 (47%), Gaps = 35/312 (11%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 N+L NL + S+ T+ +Y D Q I + I +L +I ++ K Sbjct: 9 NFLDNLLYLKNYSQETINNYRRDLLQL--------NSSIVDKDITKLENNDILMWVKKLH 60 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q ++L+R LS ++SF +L ++ + ++ K S LP+A+N + L+D Sbjct: 61 AQGNSSKTLQRKLSSLRSFFNFLINSELIKNNPTTGIKAPKSSKKLPKAVNTDELAYLLD 120 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + I+ R+ A LLY CG+R+SE S+ ++I +Q ++R+ GKG+K R+ Sbjct: 121 ------IKPSNNIETRDIACFDLLYSCGIRLSELSSIELKDININQKSIRVIGKGNKERV 174 Query: 200 VPL----LPSVRKAI---LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 V L ++ + + Y C F LF G+ L Q+ I + Sbjct: 175 VYFGSKTLINLNRWLNTRDTYSPKCNF---------LFISQNGEHLTNRSIQKRIEIFAQ 225 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 H LRHSFATH+L + DL +++ +LGH +S+TQIYT++N + + Sbjct: 226 KYATK-HIHPHMLRHSFATHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQ----LAS 280 Query: 313 IYDQTHPSITQK 324 ++D+ HP +K Sbjct: 281 VFDKAHPRAKKK 292 >gi|115380783|ref|ZP_01467658.1| integrase [Stigmatella aurantiaca DW4/3-1] gi|115362213|gb|EAU61573.1| integrase [Stigmatella aurantiaca DW4/3-1] Length = 253 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 84/241 (34%), Positives = 120/241 (49%), Gaps = 22/241 (9%) Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 RS R L+ ++ F ++L K + ++ + + LP L L V+ LL Sbjct: 11 RSQARHLAAVRGFHRFLIAEKHAEKDPTEDLDTPRSARKLPSFLT----LEEVEQ-LLAA 65 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 E R+ A+L LLY GLR+SE SL ++ L +GKG K R+VP+ S Sbjct: 66 PDERHPTGMRDKAMLELLYATGLRVSELCSLGINDVQLGAGYLVAKGKGSKERVVPV-GS 124 Query: 206 VRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQR--YIRQLRRYL---GLPL 258 V ++ Y P L LF RG G F R + + L+RY G+ Sbjct: 125 VAVEKVQAYLGGPRQHLLGKRQSRSLFITPRG-----GAFTRQGFWKLLKRYALKAGIRK 179 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + H LRHSFATHL+ G DLR++Q++LGH L+TTQIYT+VNS + +YD+ H Sbjct: 180 PISPHKLRHSFATHLVERGADLRAVQAMLGHADLATTQIYTHVNSAR----LRAVYDEHH 235 Query: 319 P 319 P Sbjct: 236 P 236 >gi|116328183|ref|YP_797903.1| tyrosine site-specific recombinase XerC [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330907|ref|YP_800625.1| tyrosine site-specific recombinase XerC [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116120927|gb|ABJ78970.1| Tyrosine site-specific recombinase XerC [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124596|gb|ABJ75867.1| Tyrosine site-specific recombinase XerC [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 311 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 94/322 (29%), Positives = 162/322 (50%), Gaps = 30/322 (9%) Query: 6 LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65 P+ S L + + ++ L+IE+ S+ T+ +Y D + F F +E++ I Q Sbjct: 8 FPKFPSSFLNETAEKFINYLKIEKNYSQNTINAYSIDLK---FFFEFCEKEQLDIL---Q 61 Query: 66 LSYTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK-SN 123 + +IR++ S + Q + RS R LS +++F K L R ESN + K Sbjct: 62 VEPVDIRSYFSYLAKEQDLDRRSQSRKLSSLRTFYKVLL-RDDQIESNPATRISFPKVRK 120 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 +P+ + +++ ++ ++ R+ A++ +LY GLR+ E ++ ++ Sbjct: 121 EVPKNFRINETEEILE---FEAERTSEILEIRDKAMIEVLYSSGLRVFELVNAKLGSLSK 177 Query: 184 DQSTLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239 D + L++ GKG K R V + S+R+ LEY ++ D+ +F +GK L Sbjct: 178 DLTVLKVLGKGQKERFVYFGKEAVDSLRR-YLEYRNVSFPDVK-----EIFLNQKGKKLT 231 Query: 240 P-GVFQRYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 GV RYI + R+ +G T H RH+FAT LL G D+R++Q +LGH LSTTQI Sbjct: 232 TRGV--RYILNERRKKMGWEKKITPHKFRHTFATDLLDAGADIRAVQELLGHSSLSTTQI 289 Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319 Y +V+ + + E+Y + HP Sbjct: 290 YLSVSKEK----IKEVYRKAHP 307 >gi|71064781|ref|YP_263508.1| tyrosine recombinase XerC subunit [Psychrobacter arcticus 273-4] gi|71037766|gb|AAZ18074.1| tyrosine recombinase XerC subunit [Psychrobacter arcticus 273-4] Length = 345 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 92/323 (28%), Positives = 149/323 (46%), Gaps = 25/323 (7%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 ELL WL L + R S TL +Y Q +FL + T + ++ Sbjct: 37 ELLAPVHRWLNVLSV-RNHSPHTLTAYFAGLNQLALFL------RGKCLTWTRCDKRQLA 89 Query: 73 AFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131 IS+R + K+ S+++ LS I+ F +L + + + + + LP + Sbjct: 90 QHISQRLDEDKLALASVQQELSAIRHFYGWLIEEDLARINPTTGYQLKRSPRPLPSIADV 149 Query: 132 KQALTLVDNVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 L+D + T + + W+ R+ A+ LLY GLR+ E ++L ++ +R+ Sbjct: 150 DLLTQLLDQEIPDTPEQARLWL--RDKAMFELLYSSGLRVGELVALDIADVDLADLRVRV 207 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245 GKG+K R+VPL AI Y + D L I L G L+ Q+ Sbjct: 208 TGKGNKTRLVPLGIKAADAIRRYLPHRNLWVEQMDTALFISEKL-----GTRLSTRAVQQ 262 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 ++ G+ + H LRH FA+H+LS GDLR++Q +LGH +STTQIYT+V+ Sbjct: 263 RLKVAATRAGIAQNMYPHLLRHCFASHMLSGSGDLRAVQEMLGHSDISTTQIYTHVDFAK 322 Query: 306 GGDWMMEIYDQTHPSITQKDKKN 328 + ++YD+ HP T K + Sbjct: 323 ----LTQVYDRAHPRATHASKDS 341 >gi|126176181|ref|YP_001052330.1| tyrosine recombinase XerC [Shewanella baltica OS155] gi|125999386|gb|ABN63461.1| tyrosine recombinase XerC [Shewanella baltica OS155] Length = 306 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 86/316 (27%), Positives = 153/316 (48%), Gaps = 33/316 (10%) Query: 21 WLQNLE----IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 WLQ E ER LS T+++Y + + L + + + + + + ++ ++ Sbjct: 15 WLQTFERYLSTERQLSAHTVRNYLYELNRGSDLLP----DGVNLLNVSREHWQQV---LA 67 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 K + + RSL LS +K + ++L + + + + K++ LP+ ++ Sbjct: 68 KLHRKGLSPRSLSLCLSAVKQWGEFLLREGVIELNPAKGLSAPKQAKPLPKNIDVDAISH 127 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L+D T + R+ A++ L Y GLR++E +L ++ D +R+ GKG+K Sbjct: 128 LLD------IEGTDPLSLRDKAMMELFYSSGLRLAELAALNLSSVQYDLKEVRVLGKGNK 181 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLR 251 RIVP+ A+L + LN Q+P LF +GK L+ Q + + Sbjct: 182 ERIVPVGRLAIAALLNW-------LNCRKQIPCEDNALFVTEKGKRLSHRSIQARMAKWG 234 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 + L + H LRHSFATH+L DLR++Q +LGH L+TTQIYT+++ ++ + Sbjct: 235 QEQALSVRVHPHKLRHSFATHMLEASADLRAVQELLGHANLATTQIYTSLDFQH----LA 290 Query: 312 EIYDQTHPSITQKDKK 327 ++YD HP + K Sbjct: 291 KVYDNAHPRAKKTQDK 306 >gi|67458963|ref|YP_246587.1| site-specific tyrosine recombinase XerD [Rickettsia felis URRWXCal2] gi|75536599|sp|Q4UM01|XERD_RICFE RecName: Full=Tyrosine recombinase xerD gi|67004496|gb|AAY61422.1| Tyrosine recombinase XerD [Rickettsia felis URRWXCal2] Length = 306 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 93/298 (31%), Positives = 151/298 (50%), Gaps = 28/298 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ L ER LSK ++ SY+ D F +LA ++ I T +R +I + Sbjct: 7 FLEMLLAERALSKNSILSYKRDLFDFQNYLAKQRLSELNITT------ENVRDWIEYLAS 60 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS+ R +S IKS+ ++L T + +LN+ K N LP L+ Q + + Sbjct: 61 NDLQARSINRKISTIKSYYEFLISENHTAFNPVLNVDLPKYQNKLPEILSIDQ----IKS 116 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-------LRIQGK 193 +L + S + R +A+++LLY GLR+SE +SL +I+ ++++ + GK Sbjct: 117 LLEYCSQDNSPEGIRLNAMIHLLYASGLRVSELVSLKLTDILTNKTSKGEVRKIFSVLGK 176 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LF--RGIRGKPLNPGVFQRY 246 G+K R++ + +I +Y L D+ +N P LF + G + F Sbjct: 177 GNKERVIVINEQAVISIAKY--LAIRDVFVNKAKPKNLIYLFPSSALAGY-MTRQNFAIL 233 Query: 247 IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 ++ Y L P + H LRHSFA+HLL G DLR IQ +LGH +STTQIYT++ + Sbjct: 234 LKSAALYANLNPEHISPHILRHSFASHLLEGGADLRVIQGLLGHADISTTQIYTHLQT 291 >gi|154491730|ref|ZP_02031356.1| hypothetical protein PARMER_01346 [Parabacteroides merdae ATCC 43184] gi|154087971|gb|EDN87016.1| hypothetical protein PARMER_01346 [Parabacteroides merdae ATCC 43184] Length = 302 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 78/282 (27%), Positives = 139/282 (49%), Gaps = 8/282 (2%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++L L ER S+ T+ +Y D +QF F+ E+K I ++ +R +I Sbjct: 6 DSFLDYLRYERNYSEYTINAYFKDLQQFEDFVK---EKKEGIFVPEEVDTDIVRNWIISL 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 KI S+ R LS +KSF K+L K+ + + + + K LP + EK L+ Sbjct: 63 LDNKISPVSVNRKLSSLKSFFKFLMKQGFVSVNPLRFVTGPKTKKPLPTFVKEKDMEELL 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + + R+ +L +LY G+R SE + L +I D +R+ GK +K R Sbjct: 123 DG----DGFDEDFEGVRDRLVLEMLYDTGVRRSELVGLQDTDIDYDAMLIRVTGKRNKQR 178 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 ++P ++ +L Y ++ +++ R G+ L+ G+ +++ + Sbjct: 179 LIPFAERLKNLMLAYTEVRNREVDAGCGWFFVRK-NGEQLSTGILYTIVKKRLSDIPTLA 237 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + H LRHSFAT +L+NG +L +++ +LGH L++T IYT+ Sbjct: 238 KCSPHVLRHSFATSMLNNGAELNAVKELLGHSSLASTSIYTH 279 >gi|323500158|ref|ZP_08105103.1| site-specific tyrosine recombinase XerC [Vibrio sinaloensis DSM 21326] gi|323314787|gb|EGA67853.1| site-specific tyrosine recombinase XerC [Vibrio sinaloensis DSM 21326] Length = 310 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 82/306 (26%), Positives = 151/306 (49%), Gaps = 22/306 (7%) Query: 25 LEIERGLSKLTLQSYECDTR---QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L E+GLS T ++Y+ Q L+ L ++ +RQL+ +R + Sbjct: 23 LRSEKGLSLHTQRNYKQQLETMAQHLVQLGLKDWSQVDSAWVRQLASKGMRDGMKAS--- 79 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 SL LS ++SF +L R + + + +K LP+ L+ + L++ Sbjct: 80 -----SLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVGQLLE-- 132 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 +E + R+ A++ ++YG GLR++E +S+ +++ +R+ GKGDK R VP Sbjct: 133 ----VNEDDPLSVRDRAMMEMMYGAGLRLAELVSINVRDVSFTSGEIRVVGKGDKERKVP 188 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 + + ++ + N + Q LF G ++ Q+ + + + + + Sbjct: 189 FSGMAAEWVNKWLKVRASLANSDEQ-ALFVSKLGVRISHRNVQKRMAEWGQKQAVASHIS 247 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321 H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ ++ + E+YDQ HP Sbjct: 248 PHKLRHSFATHVLESSNNLRAVQELLGHENISTTQIYTHLDFQH----LAEVYDQAHPRA 303 Query: 322 TQKDKK 327 ++ K Sbjct: 304 RKRGNK 309 >gi|237746874|ref|ZP_04577354.1| tyrosine recombinase XerD [Oxalobacter formigenes HOxBLS] gi|229378225|gb|EEO28316.1| tyrosine recombinase XerD [Oxalobacter formigenes HOxBLS] Length = 303 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 86/283 (30%), Positives = 141/283 (49%), Gaps = 11/283 (3%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 + + + +E GLS+ TL +Y D + F A + E+ + +++ + ++ R Sbjct: 5 EFCETVWLEDGLSQNTLDAYRRDMQLF----AQWLEKNGPGTRLLEVTPDILNSYFLARH 60 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 ++ S R L+ +K F + + + M K+ P L+E Q V+ Sbjct: 61 SESKAT-SANRRLTVLKRFYRLQFRLGRLAVNPCQKMHAAKQPARFPGTLSETQ----VE 115 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 ++L+ E + R+ ++ L+Y GLR+SE ++L + ++ LRI GKG K R+ Sbjct: 116 SLLIAPRVENP-LGLRDRTMIELMYASGLRVSELVTLKLVEVGMNEGVLRILGKGSKTRL 174 Query: 200 VPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VP R I Y + PF L + LF RG + +F IR+ G+ Sbjct: 175 VPFGEEARIWIERYMRESRPFILAGKVSDYLFVTARGTSMTRQMFWTLIRKYALQSGIHE 234 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V Sbjct: 235 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHV 277 >gi|332534422|ref|ZP_08410262.1| tyrosine recombinase XerC [Pseudoalteromonas haloplanktis ANT/505] gi|332036156|gb|EGI72631.1| tyrosine recombinase XerC [Pseudoalteromonas haloplanktis ANT/505] Length = 314 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 80/267 (29%), Positives = 138/267 (51%), Gaps = 41/267 (15%) Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSL 125 IR + R++++ R++ LS I+S K+LK + I +S+ N ++ K + L Sbjct: 65 HIRRYSMALRSKQLSGRTISLKLSCIRSLYKFLKAKNIAEQSHYHNPAIGIKGPKFAKPL 124 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 P+ L+ Q L++ + + + R+ A++ L+Y GLRISE + Q+I Sbjct: 125 PKNLDVDQMARLLEIP------DDEPLAIRDKAMMELMYSSGLRISELVGANMQDISAAN 178 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF-- 243 + ++GKG+K R++P+ A+ ++ L I+ P F KP VF Sbjct: 179 GEILVRGKGNKERLIPVGTKALDALKKW---------LTIR-PQF----AKPDEIAVFLS 224 Query: 244 ----QRYIRQLRRYL-------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 + IRQ+R + G+ H LRHSFA+H+L + GDLR++Q +LGH L Sbjct: 225 SQKNRISIRQVRLRMQEWGIKQGISSQVHPHKLRHSFASHILESSGDLRAVQELLGHSSL 284 Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHP 319 S TQ+YT+++ ++ + ++YD THP Sbjct: 285 SATQVYTHLDFQH----LAKVYDNTHP 307 >gi|295396350|ref|ZP_06806516.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030] gi|294970790|gb|EFG46699.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030] Length = 329 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 83/317 (26%), Positives = 145/317 (45%), Gaps = 15/317 (4%) Query: 10 VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSY 68 +S E L + L + + S+ T+++Y D + FLA + I + I Sbjct: 19 LSAEYLDALDRFHNELTVHKNASEHTVRNYIADATNLMEFLARDGNGDPIHLADI---EI 75 Query: 69 TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 +R ++ Q +L R ++GI+SF + + IT + + KK+ LP Sbjct: 76 GNLRQWLLHLSAQGASPGTLARRIAGIRSFFTFTTRAGITATNPASRLSTPKKATRLPTV 135 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDA------RNSAILYLLYGCGLRISEALSLTPQNIM 182 L + ++ + + K R+ A++ LLY G+R+SE ++L ++ Sbjct: 136 LQQSHTEDVLTQPFEPPAEDAKLTKTQRAARTRDIALVELLYATGMRVSELVNLDTTDVD 195 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242 + + GKG+K R +P ++A+ E+ ++ L Q LF G+RG +N Sbjct: 196 WTAGLITVLGKGNKQRRIPFGGPSQRALTEWLEVRNH-LASEGQEALFVGVRGGRINQRQ 254 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + + + + H LRHS ATH++ NG D+R +Q LGH LS+TQIYT+V+ Sbjct: 255 VRDVVHKATAKRAKSPEISPHGLRHSAATHMVENGADIRQVQEFLGHATLSSTQIYTHVS 314 Query: 303 SKNGGDWMMEIYDQTHP 319 + + Y Q HP Sbjct: 315 LGK----LKDSYTQAHP 327 >gi|167618124|ref|ZP_02386755.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis Bt4] Length = 312 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 85/278 (30%), Positives = 136/278 (48%), Gaps = 17/278 (6%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI-QTIRQLSYTEIRAFISKRRTQKIGD 85 +E GLS+ TL +Y D + F +LA +++ +T R + + +I+ R K Sbjct: 33 LEHGLSRNTLDAYRRDLQLFAQWLA--ARHAVSLDRTERPM----LEGYIAARSDGKAT- 85 Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 S R LS + + + + L + + K++ P L+E Q L+ + T Sbjct: 86 -SSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDT 144 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 + R+ +L L+Y GLR+SE ++L + ++ +R+ GKG K R+VP Sbjct: 145 P-----LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPF-GE 198 Query: 206 VRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 V +E Y D P L LF RG + F I++ + + + H Sbjct: 199 VAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPH 258 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 TLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V Sbjct: 259 TLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 296 >gi|251772344|gb|EES52912.1| phage integrase family protein [Leptospirillum ferrodiazotrophum] Length = 336 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 78/251 (31%), Positives = 119/251 (47%), Gaps = 7/251 (2%) Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 F+ + + S+ R LS ++ F +LK + E + + + LP L E + Sbjct: 87 FVKRLHDRGYAPSSIARILSSLRGFYGFLKTQGHIAEDPFAGISGPRANRPLPPLLTETE 146 Query: 134 ALTLVD----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 A TLV N + E + R+ AIL L Y G+R+SE L ++ +LR Sbjct: 147 AETLVTAPVRNPVPKGGDEGTSL--RDRAILELFYQTGVRLSELCGLLWEDAAPGIVSLR 204 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 ++GKG K R VP++ KA+ + ++ PLF G L+P R +++ Sbjct: 205 VRGKGGKERRVPVVGEALKALCALREFL-LKSGVSPTGPLFADGDGGALSPWQVSRIVKK 263 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 R GL + + H LRHS ATHLL DLR IQS+LGH L +TQ Y + Sbjct: 264 YAREAGLQKTVSPHALRHSCATHLLDREADLREIQSLLGHASLGSTQRYLHTGLSEIARK 323 Query: 310 MMEIYDQTHPS 320 + +I D+T P+ Sbjct: 324 LSKIRDETPPA 334 >gi|332299940|ref|YP_004441861.1| Tyrosine recombinase xerC [Porphyromonas asaccharolytica DSM 20707] gi|332177003|gb|AEE12693.1| Tyrosine recombinase xerC [Porphyromonas asaccharolytica DSM 20707] Length = 407 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 85/296 (28%), Positives = 150/296 (50%), Gaps = 12/296 (4%) Query: 9 IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFL-IFLAFYTEEKITIQTIRQLS 67 +++ EL + + +++ L +ER S LTL +Y ++ L ++E R L Sbjct: 5 MLTEELEQTLEAFIEYLRLERNASPLTLNTYRPAITSYMECALELASDEWQPSDADRDL- 63 Query: 68 YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127 +R +I ++ ++ ++ ++LS +KSF KYL+ R + + +R K+ ++LP Sbjct: 64 ---VRNWIMQQMDDELTSTTVNKNLSAVKSFYKYLQLRGVVDNNPTRYLRGPKREHTLPS 120 Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 L + Q ++ + + ++ RN I+ +Y GLR +E SL Q + + Sbjct: 121 FLTQAQIEEALETI---PTDPEDFLAVRNRLIIETIYQTGLRRAEVASLETQQVDLASMS 177 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG-VFQRY 246 LR+ GKG K RIVP ++++ + Y L + + F ++ +PL+ V+Q Sbjct: 178 LRVVGKGRKERIVPFGEALKEQMKAYLTLK--EQKVGQSRYFFVTLKCRPLSGADVYQVV 235 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + L GLP AHTLRHSFAT +L+ G + SI+ +LGH L TT YT+ + Sbjct: 236 HKALDIVPGLP-RRGAHTLRHSFATEMLNAGAPITSIKELLGHSNLETTTRYTHTS 290 >gi|325919208|ref|ZP_08181257.1| tyrosine recombinase XerD subunit [Xanthomonas gardneri ATCC 19865] gi|325550308|gb|EGD21113.1| tyrosine recombinase XerD subunit [Xanthomonas gardneri ATCC 19865] Length = 323 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 89/309 (28%), Positives = 149/309 (48%), Gaps = 23/309 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L E G+++ TL SY D L LA + + + + + ++ R Sbjct: 28 ERFLDRFWAENGVARQTLDSYRRD----LEGLARWRDG--AGGGLLGVDRAAVFDYLRWR 81 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + RS R LS +++F + + ++ + SLP+AL E Q Sbjct: 82 SEARYSPRSTARLLSTLRAFYGLCLREGLRSDDPTALIDPPHLPRSLPKALTESQI---- 137 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL + R+ A+L L+Y GLR+SE ++L + Q LR+ GKG K R Sbjct: 138 -EALLAAPDIDSPLGLRDRAMLELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDR 196 Query: 199 IVPLLPSVRKAILEY-YDLCPF------DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 +VPL + + Y ++ P +++ Q+PLF +P + F +++ Sbjct: 197 LVPLGEESQHWLERYLHEARPLLASHKPVASVDGQVPLFVDAARQPPSRQQFWALVKRYA 256 Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ P + + H LRHSFATHLL++G DLR++Q +LGH LSTTQIYT V ++ + Sbjct: 257 AVAGIDPDTVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQH----L 312 Query: 311 MEIYDQTHP 319 +++ + HP Sbjct: 313 QKLHAKHHP 321 >gi|15639382|ref|NP_218831.1| integrase/recombinase (codV) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025624|ref|YP_001933396.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14] gi|3322669|gb|AAC65375.1| integrase/recombinase (codV) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018199|gb|ACD70817.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14] gi|291059781|gb|ADD72516.1| tyrosine recombinase XerD [Treponema pallidum subsp. pallidum str. Chicago] Length = 306 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 135/242 (55%), Gaps = 20/242 (8%) Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 FI KR + +++ + ++ + +F ++L ++ ++ + ++ +++ SLPR L+ +Q Sbjct: 57 FIEKRSAAGVSGKTIAKDMAALHAFYQFLILEQVRPDNPMQDVDAPRRAYSLPRVLSPEQ 116 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 T + ++ L T R+ A+ L+Y GLR+SEA+SL+ +I + L++ GK Sbjct: 117 VNTFLQSIPLCTPG-----GVRDRALFELIYAAGLRVSEAVSLSLSDIFFAERLLKVTGK 171 Query: 194 GDKIRIVP--------LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-PGVFQ 244 G+K R+ P L+ +R+A + + N + +F +G L+ G+++ Sbjct: 172 GNKERMAPFGEQACYFLMQYIREARVRFTS-AKHPENSEKKGAVFLNRQGGRLSRKGIWK 230 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 R ++ + G+ T HT RHS+ATHLL+ G DL S+Q +LGH ++TTQ+YT+V + Sbjct: 231 R-LQDIEIRSGV--ETHVHTFRHSYATHLLAGGVDLHSVQCLLGHADIATTQVYTHV--E 285 Query: 305 NG 306 NG Sbjct: 286 NG 287 >gi|313887245|ref|ZP_07820939.1| putative ribosomal subunit interface protein [Porphyromonas asaccharolytica PR426713P-I] gi|312923298|gb|EFR34113.1| putative ribosomal subunit interface protein [Porphyromonas asaccharolytica PR426713P-I] Length = 413 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 85/296 (28%), Positives = 150/296 (50%), Gaps = 12/296 (4%) Query: 9 IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFL-IFLAFYTEEKITIQTIRQLS 67 +++ EL + + +++ L +ER S LTL +Y ++ L ++E R L Sbjct: 11 MLTEELEQTLEAFIEYLRLERNASPLTLTTYRPAITSYMECALELASDEWQPSDADRDL- 69 Query: 68 YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127 +R +I ++ ++ ++ ++LS +KSF KYL+ R + + +R K+ ++LP Sbjct: 70 ---VRNWIMQQMDDELTSTTVNKNLSAVKSFYKYLQLRGVVDNNPTRYLRGPKREHTLPS 126 Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 L + Q ++ + + ++ RN I+ +Y GLR +E SL Q + + Sbjct: 127 FLTQAQIEEALETI---PTDPEDFLAVRNRLIIETIYQTGLRRAEVASLETQQVDLASMS 183 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG-VFQRY 246 LR+ GKG K RIVP ++++ + Y L + + F ++ +PL+ V+Q Sbjct: 184 LRVVGKGRKERIVPFGEALKEQMKAYLTLK--ERKVGQSRYFFVTLKCRPLSGADVYQVV 241 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + L GLP AHTLRHSFAT +L+ G + SI+ +LGH L TT YT+ + Sbjct: 242 HKALDVVPGLP-RRGAHTLRHSFATEMLNAGAPITSIKELLGHSNLETTTRYTHTS 296 >gi|34222780|sp|Q48733|XERC_LACLE RecName: Full=Tyrosine recombinase xerC gi|1359910|emb|CAA59018.1| xerC recombinase [Lactobacillus leichmannii] Length = 295 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 82/286 (28%), Positives = 141/286 (49%), Gaps = 12/286 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L+ ER S T+ +Y+ D L + +E Q+S ++ ++ Sbjct: 5 EQFLSYLKNERSYSPKTVLAYQKD----LAAAKKFWQENGGFPGWDQISRRDLEIYLLAT 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 QK+ +L R LS +KSF + L +R + + ++ + LP + + ++ Sbjct: 61 -GQKLASSTLSRKLSSLKSFYRLLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQVI 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 ++ ++ K + RN AI+ L Y G+R+SE L + + + + + GKG+K R Sbjct: 120 RSL-----NDGKPLTVRNRAIVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNKDR 174 Query: 199 IVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 V +K + EY + L N +F G+P++ + ++Q+ + GL Sbjct: 175 YVFFDQESKKYLEEYLQVARPSLLKNEPDTEAVFLNKLGRPISSRGIAKAVQQIFQKAGL 234 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 H LRHSFAT +L+NG DLRS+Q +LGH LSTTQIYT+V+ Sbjct: 235 TAGAHPHELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVS 280 >gi|160877191|ref|YP_001556507.1| tyrosine recombinase XerC [Shewanella baltica OS195] gi|160862713|gb|ABX51247.1| tyrosine recombinase XerC [Shewanella baltica OS195] gi|315269395|gb|ADT96248.1| tyrosine recombinase XerC [Shewanella baltica OS678] Length = 306 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 85/308 (27%), Positives = 151/308 (49%), Gaps = 33/308 (10%) Query: 21 WLQNLE----IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 WLQ E ER LS T+++Y + + L + + + + + + ++ ++ Sbjct: 15 WLQTFERYLSTERQLSAHTVRNYLYELNRGSDLLP----DGVHLLNVSREHWQQV---LA 67 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 K + + RSL LS +K + ++L + + + + K++ LP+ ++ Sbjct: 68 KLHRKGLSPRSLSLCLSAVKQWGEFLLRESVIELNPAKGLSAPKQAKPLPKNIDVDAISH 127 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L+D T + R+ A++ L Y GLR++E +L ++ D +R+ GKG+K Sbjct: 128 LLD------IEGTDPLSLRDKAMMELFYSSGLRLAELAALNLSSVQYDLKEVRVLGKGNK 181 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLR 251 RIVP+ A+L + LN Q+P LF +GK L+ Q + + Sbjct: 182 ERIVPVGRLAIAALLNW-------LNCRKQIPCEDNALFVTEKGKRLSHRSIQARMAKWG 234 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 + L + H LRHSFATH+L DLR++Q +LGH L+TTQIYT+++ ++ + Sbjct: 235 QEQALSVRVHPHKLRHSFATHMLEASADLRAVQELLGHANLATTQIYTSLDFQH----LA 290 Query: 312 EIYDQTHP 319 ++YD HP Sbjct: 291 KVYDNAHP 298 >gi|312891380|ref|ZP_07750897.1| tyrosine recombinase XerD [Mucilaginibacter paludis DSM 18603] gi|311296074|gb|EFQ73226.1| tyrosine recombinase XerD [Mucilaginibacter paludis DSM 18603] Length = 299 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 84/306 (27%), Positives = 152/306 (49%), Gaps = 15/306 (4%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 K ++ + L +E+ LS ++ +Y D + + F + K+ + ++R FI Sbjct: 5 KAKKGFSSYLRLEKSLSANSVGAYLGDLDKLIQF----ADSKLIKLYPDTIGMNDLREFI 60 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 + S R +SGIK+F KYL + + L ++ L R L + ++ Sbjct: 61 MWVNELGMIPSSQARIISGIKAFYKYL----LMDNQLSYDPSELLEAPKLMRKLPDTLSI 116 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 +D L+ +K RN ++ +LYGCGLR++E ++L N+ D +++ GKG+ Sbjct: 117 VDIDK-LIDAIDLSKPEGMRNKTMIEVLYGCGLRVTELVNLRISNLYLDIEFIKVLGKGN 175 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 K R+VP+ K + + + + + +F RG L+ I++L Sbjct: 176 KERLVPIGAQAIKFLKIWLQEVRVHTPVKMGEEDIVFLNRRGNRLSRVYVFMMIKELAEK 235 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 +GL S + HT RHSFATHL+ G DLR++Q +LGH ++TT+IYT+++ +++ + Sbjct: 236 IGLKKSISPHTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTHLDR----EYLKGV 291 Query: 314 YDQTHP 319 + HP Sbjct: 292 IIEHHP 297 >gi|262038210|ref|ZP_06011604.1| tyrosine recombinase XerD [Leptotrichia goodfellowii F0264] gi|261747791|gb|EEY35236.1| tyrosine recombinase XerD [Leptotrichia goodfellowii F0264] Length = 315 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 86/294 (29%), Positives = 143/294 (48%), Gaps = 34/294 (11%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 +KE ++L E+G SK T+ YE D + F ++ Q S T+I+ Sbjct: 33 FIKEFSDYLS---FEKGSSKNTVAGYERDLKIFFDYI--------------QKSATDIKE 75 Query: 74 FISKRR----TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 ++++ S+ R ++ I++F K+ K+ E +++LK+ LP L Sbjct: 76 EDIYEYIEEISRELKRNSVLRKIASIRTFYKFCYLNKMVKEDPTGMIKSLKREKRLPEVL 135 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-QSTL 188 N K+ T++DN+ HT R+ I+ L G R+SE L+L +++ + + Sbjct: 136 NLKEVKTIIDNIG-HTPE-----GMRDRLIIKFLIATGARVSEILNLNIKDVENQGYEFI 189 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 ++ GKG K RIVP+ S+ I +Y + P LF R + F + + Sbjct: 190 KVLGKGSKYRIVPIYESLENEIKDYISNYRPKLKGSESSFKLFPDTRREN-----FWKRL 244 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 ++ + G+ + H RHS AT LLSNG D+R +Q ILGH +STT+IYT+V Sbjct: 245 KKTAKDAGIEKNVYPHIFRHSVATVLLSNGADIRIVQEILGHANISTTEIYTHV 298 >gi|271964493|ref|YP_003338689.1| tyrosine recombinase XerD [Streptosporangium roseum DSM 43021] gi|270507668|gb|ACZ85946.1| tyrosine recombinase XerD [Streptosporangium roseum DSM 43021] Length = 308 Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 91/310 (29%), Positives = 153/310 (49%), Gaps = 25/310 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L +L +ERGL+ TL SY D +++ L + ++T I + ++ AF++ R Sbjct: 10 SYLAHLALERGLAANTLASYRRDLLRYVEHL--KSRGRVTFGEIAE---GDVTAFLAALR 64 Query: 80 T-----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 Q + S R++S ++ ++ + ++ +R ++ LP+A++ Sbjct: 65 AGDEEHQALVASSAARAVSAVRGLHRFALREGVSDHDPAHGVRPPRQLRRLPKAISVND- 123 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQG 192 V+ ++ + E + RN A+L LLYG G RISEA+ L ++ D +R++G Sbjct: 124 ---VERLIAASGPEGAPLTMRNRALLELLYGTGARISEAVGLAVDDVDLGSDTQQVRLRG 180 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLN-PGVFQRYIRQ 249 KG + R+VPL R+A+ Y + + + LF RG L G ++ + Q Sbjct: 181 KGGRTRLVPLGRFAREALGAYLARARPGIAAHGRGTSGLFLNARGGRLTRQGAWE--VLQ 238 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 G + H LRHSFATHLL G D+R +Q +LGH ++TTQ+YT V D Sbjct: 239 AAAERGGLAGISPHILRHSFATHLLDGGVDVRVVQELLGHASVTTTQVYTLVTV----DK 294 Query: 310 MMEIYDQTHP 319 + E Y HP Sbjct: 295 LREAYAAAHP 304 >gi|254488719|ref|ZP_05101924.1| tyrosine recombinase XerD [Roseobacter sp. GAI101] gi|214045588|gb|EEB86226.1| tyrosine recombinase XerD [Roseobacter sp. GAI101] Length = 324 Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 90/298 (30%), Positives = 140/298 (46%), Gaps = 32/298 (10%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT-----EIRAF 74 +L+ E G S T +Y D + F FLA R L + ++ + Sbjct: 11 TFLEAQAAELGASTNTQLAYGRDLKDFDSFLAG-----------RHLDFARATRDDVERY 59 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 + Q + + R LS IK ++ + +++ + + + LP+ L+E + Sbjct: 60 LVWCDAQGLAKSTRARRLSAIKQIYRFAFEESWRSDNPAIQISGPGQDKRLPKILSEHE- 118 Query: 135 LTLVDNVLLHTSHETKWIDA--RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 VD +L + + RN+ ++ LLY G+R+SE +SL D L I G Sbjct: 119 ---VDRLLEAARGSGRNLHEKLRNTCLMELLYATGMRVSELVSLPVSATRGDPRLLLIMG 175 Query: 193 KGDKIRIVPLLPSVRKAILEYY------DLCPFDLNLNIQLPLF--RGIRGKPLNPGVFQ 244 KG+K R+VPL P R A+ ++ D LF RG+ G L F Sbjct: 176 KGNKERLVPLSPPARVALTDWLIARDQIDAAAQAKKQPASRFLFPSRGVAGY-LTRHRFY 234 Query: 245 RYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 I++ G+ P T HTLRH+FATHLL+NG DLR+IQ++LGH ++TT+IYT+V Sbjct: 235 LMIKEFAVAGGVDPSKVTPHTLRHAFATHLLANGADLRAIQTMLGHADVATTEIYTHV 292 >gi|167580058|ref|ZP_02372932.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis TXDOH] Length = 323 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 83/277 (29%), Positives = 133/277 (48%), Gaps = 15/277 (5%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 +E GLS+ TL +Y D + F +LA +++ + + +I+ R K Sbjct: 44 LEHGLSRNTLDAYRRDLQLFAQWLA--ARHAVSLDRTEK---PMLEGYIAARSDGKAT-- 96 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R LS + + + + L + + K++ P L+E Q L+ + T Sbjct: 97 SSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTP 156 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 + R+ +L L+Y GLR+SE ++L + ++ +R+ GKG K R+VP V Sbjct: 157 -----LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPF-GEV 210 Query: 207 RKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 +E Y D P L LF RG + F I++ + + + HT Sbjct: 211 AHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPHT 270 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 LRH+FATHLL++G DLR +Q +LGH +STTQIYT+V Sbjct: 271 LRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 307 >gi|171463113|ref|YP_001797226.1| tyrosine recombinase XerD [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192651|gb|ACB43612.1| tyrosine recombinase XerD [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 307 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 87/297 (29%), Positives = 148/297 (49%), Gaps = 21/297 (7%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 +E GL++ +L +Y D L+ LA + K + + ++ ++ A+I+ RR K Sbjct: 25 LEDGLAQNSLAAYRRD----LLLLAQWLY-KDSGGDLYGVTEKDLTAYIAYRRADKA--T 77 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 + R L+ K F ++ + + + +R K++ P+ L+E Q L++ + TS Sbjct: 78 TANRRLTVFKRFYRHALRMNLVKSDPCMGLRAAKQALRFPKTLSEDQVTALLNAPDIETS 137 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS 205 + R+ +L L+Y GLR+SE +SL + ++ +R+ GKG K R+VP Sbjct: 138 -----LGLRDRTMLELMYASGLRVSEIVSLKTAALGLNEGVVRVVNGKGGKERLVPFGGE 192 Query: 206 VRKAILEYYDLC--PFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 + + Y P L +F G G L F I++ + ++ + Sbjct: 193 AGQWLRRYLAEARTPL-LEGKTSDAVFVGRHTGTGLTRQAFWALIKRYATVANISVALSP 251 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V + + I+ Q HP Sbjct: 252 HTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARER----LKSIHQQHHP 304 >gi|83720485|ref|YP_441282.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis E264] gi|257140051|ref|ZP_05588313.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis E264] gi|83654310|gb|ABC38373.1| tyrosine recombinase XerD [Burkholderia thailandensis E264] Length = 333 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 85/278 (30%), Positives = 136/278 (48%), Gaps = 17/278 (6%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI-QTIRQLSYTEIRAFISKRRTQKIGD 85 +E GLS+ TL +Y D + F +LA +++ +T R + + +I+ R K Sbjct: 54 LEHGLSRNTLDAYRRDLQLFAQWLA--ARHAVSLDRTERPM----LEGYIAARSDGKAT- 106 Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 S R LS + + + + L + + K++ P L+E Q L+ + T Sbjct: 107 -SSNRRLSVFRRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDT 165 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 + R+ +L L+Y GLR+SE ++L + ++ +R+ GKG K R+VP Sbjct: 166 P-----LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPF-GE 219 Query: 206 VRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 V +E Y D P L LF RG + F I++ + + + H Sbjct: 220 VAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPH 279 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 TLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V Sbjct: 280 TLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 317 >gi|260771883|ref|ZP_05880801.1| site-specific recombinase XerD [Vibrio metschnikovii CIP 69.14] gi|260613175|gb|EEX38376.1| site-specific recombinase XerD [Vibrio metschnikovii CIP 69.14] Length = 302 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 92/305 (30%), Positives = 157/305 (51%), Gaps = 21/305 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + +ERGL++ TL SY D + L+++ + + I E +++++ Sbjct: 13 EQFLDAMWMERGLAENTLMSYRNDLTKLLLWM---EQHDYRLDFISLAGLLEYQSWLTD- 68 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q S R LS ++ +YL + K+ ++ + + K LP+ L+E+Q Sbjct: 69 --QDYKQTSRARMLSALRRLFQYLHREKVRSDDPSALLVSPKLPQRLPKDLSEEQV---- 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL+ ++ R+ A+L LLY GLR++E +SLT +NI Q +R+ GKG K R Sbjct: 123 -EALLNAPDPNDPLELRDKAMLELLYATGLRVTELISLTMENISLRQGVVRVVGKGGKER 181 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNL---NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 +VP+ + + I + + L+L N +F R + + F I+ G Sbjct: 182 LVPMGENAIEWIETF--IAQGRLHLLGDNTSDVVFPSKRAQQMTRQTFWHRIKYYAVIAG 239 Query: 256 LPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 + + + H LRH+FATHLL+ G DLR +Q +LGH LSTTQIYT+V ++ + +I+ Sbjct: 240 IDVEKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIH 295 Query: 315 DQTHP 319 + HP Sbjct: 296 SEHHP 300 >gi|153835738|ref|ZP_01988405.1| tyrosine recombinase XerC [Vibrio harveyi HY01] gi|148867607|gb|EDL66909.1| tyrosine recombinase XerC [Vibrio harveyi HY01] Length = 313 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 84/301 (27%), Positives = 152/301 (50%), Gaps = 16/301 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L E+GLS T ++Y +Q L +A + E + ++ Q+ +R K + + Sbjct: 24 LRSEKGLSLHTQRNY----KQQLETMAHHLAE-MGLKDWSQVDAGWVRQLAGKGMREGMK 78 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 SL LS ++SF +L R + + + +K LP+ L+ + N LL Sbjct: 79 ASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEV-----NQLLE 133 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + E + R+ A++ L+YG GLR++E +S+ +++ LR+ GKGDK R VP Sbjct: 134 VN-EDDPLAVRDRAMMELMYGAGLRLAELVSVDVRDVQLRSGELRVIGKGDKERKVPFSG 192 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 + + ++ + DL + LF G ++ Q+ + + + + + H Sbjct: 193 MATEWVGKWLRVR-GDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQKQSVASHISPHK 251 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ ++ + + YDQ HP ++ Sbjct: 252 LRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQH----LAQAYDQAHPRARKR 307 Query: 325 D 325 + Sbjct: 308 N 308 >gi|116491033|ref|YP_810577.1| tyrosine recombinase XerD subunit [Oenococcus oeni PSU-1] gi|290890513|ref|ZP_06553588.1| hypothetical protein AWRIB429_0978 [Oenococcus oeni AWRIB429] gi|116091758|gb|ABJ56912.1| tyrosine recombinase XerD subunit [Oenococcus oeni PSU-1] gi|290479909|gb|EFD88558.1| hypothetical protein AWRIB429_0978 [Oenococcus oeni AWRIB429] Length = 302 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 88/304 (28%), Positives = 156/304 (51%), Gaps = 22/304 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++ + L E+GL + +++SY+ D +F A+ +E I + + + + I +++ + Sbjct: 14 DYTRYLRTEQGLLENSIKSYKQDLSEFG---AYIQKENILLVKVDRFT---ILDWLNYLQ 67 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN--EKQALTL 137 + S+ +S ++ F YL + +L + KK++ LP+ L E +A+ Sbjct: 68 NSGKSNNSIVHMVSSLRKFFAYLSDDQQIQIDPMLKVTTPKKNSHLPQVLTATEIEAVLA 127 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 V ++ + + RN A+L +Y G R+SE +L ++ D+ + GKG K Sbjct: 128 VPDI-------STTLGLRNRALLETMYATGFRVSEICNLKLADLHDELGLITTIGKGQKQ 180 Query: 198 RIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYLG 255 RIVP+ I +Y+ P L LF G ++ G+F + ++++ G Sbjct: 181 RIVPIGEMSLLYISKYFKESRPILLKDKESPYLFLNDHGHRISRQGIF-KLVKEIAIKAG 239 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + HTLRHSFAT+LL NG DLR +Q +LGH +STTQIYT+V+ K+ + E Y+ Sbjct: 240 IDKDISPHTLRHSFATNLLENGADLRIVQELLGHSDISTTQIYTHVSQKH----IREQYN 295 Query: 316 QTHP 319 + HP Sbjct: 296 RFHP 299 >gi|325962900|ref|YP_004240806.1| tyrosine recombinase XerD [Arthrobacter phenanthrenivorans Sphe3] gi|323468987|gb|ADX72672.1| tyrosine recombinase XerD [Arthrobacter phenanthrenivorans Sphe3] Length = 334 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 97/329 (29%), Positives = 147/329 (44%), Gaps = 60/329 (18%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE-IRAFI-SK 77 ++LQ++ +ERGL+ TL +Y D ++ +LA + + Q I + T +RA Sbjct: 33 DYLQHMGVERGLAANTLSAYRRDLARYSRYLA--AQGCSSPQDITRHHVTGYVRALSDGS 90 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 +G RS R++ ++ K+ T + LP+A++ Sbjct: 91 DGGSALGVRSAARTVVAVRGLHKFWALEGYTPADPASEVHPPMPGKRLPKAIS------- 143 Query: 138 VDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-----STLRI 190 VD V +L + R+ A+L LY G RISEA+ L +I D + +R+ Sbjct: 144 VDEVTRILEAAGTDTATGLRDRALLEFLYSTGARISEAVGLDVDDISLDTGESGPAIVRL 203 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-------NPGVF 243 GKG K R+VPL +A+ Y +RG+PL P +F Sbjct: 204 FGKGSKERLVPLGSYGARALDAYL------------------VRGRPLLAAKGKGTPALF 245 Query: 244 -----QRYIRQ-----LRRYLG---LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290 R RQ L+ G + + HTLRHSFATHLL G D+R +Q +LGH Sbjct: 246 LNARGGRISRQSAWTILKAAAGKAQITKDVSPHTLRHSFATHLLEGGADVRVVQELLGHA 305 Query: 291 RLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 ++TTQ+YT V + D + EIY HP Sbjct: 306 SVTTTQVYTLVTA----DTLREIYAAAHP 330 >gi|239917444|ref|YP_002957002.1| tyrosine recombinase XerC subunit [Micrococcus luteus NCTC 2665] gi|281414065|ref|ZP_06245807.1| tyrosine recombinase XerC subunit [Micrococcus luteus NCTC 2665] gi|239838651|gb|ACS30448.1| tyrosine recombinase XerC subunit [Micrococcus luteus NCTC 2665] Length = 346 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 89/326 (27%), Positives = 147/326 (45%), Gaps = 31/326 (9%) Query: 21 WLQNLEI----ERGLSKLTLQSYECDTRQFLIFL---------------AFYTEEKITIQ 61 WL+ E ER S T+++Y D R + + A Sbjct: 23 WLEAFEEHLRHERNRSPQTVRAYLADLRALIDHVVGTAGTSGTPAADDDAPVRHAPSAPD 82 Query: 62 TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121 + +L ++R +++ + +L R ++ +++F +L++ + ++ L +R+ + Sbjct: 83 VLAELDIEDLRGWLAAMSGAGLARATLARRVAAVRTFTAWLRREGLRSDDPALRLRSPRP 142 Query: 122 SNSLPRALNEKQAL-------TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174 +LP L E+QA LVD + R++A+L LLY G R++E Sbjct: 143 EGTLPHVLQEQQARRLLAAAQELVDAAAAGDDPVAHALALRDAALLELLYATGARVAELS 202 Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGI 233 +L ++ + +R+ GKGD+ R VP +A+ + L L P LF G Sbjct: 203 ALDVDDLEAGRGVVRLTGKGDRQRTVPYGDPAGRALQAWQRLGRPRLARPDSGPALFLGA 262 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 RG L + + + LG + H LRH+ ATHLL G DLRS+Q +LGH L Sbjct: 263 RGGRLGVRQARTVVDRALEGLGDTAARGPHALRHTAATHLLDGGADLRSVQELLGHASLR 322 Query: 294 TTQIYTNVNSKNGGDWMMEIYDQTHP 319 TTQ+YT+V+ D + E Y Q HP Sbjct: 323 TTQVYTHVSI----DRLREGYRQAHP 344 >gi|157825624|ref|YP_001493344.1| site-specific tyrosine recombinase XerD [Rickettsia akari str. Hartford] gi|157799582|gb|ABV74836.1| site-specific tyrosine recombinase XerD [Rickettsia akari str. Hartford] Length = 306 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 92/298 (30%), Positives = 150/298 (50%), Gaps = 28/298 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ L ER LSK ++ SY+ D F +LA + I T +R +I Sbjct: 7 FLEMLLAERALSKNSILSYKRDLCDFQNYLAKQRLSALNITT------ANVRDWIEYLAN 60 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS+ R +S +K++ ++L TT + +LN+ K N LP L+ Q +L++ Sbjct: 61 NDLQARSINRKISTVKNYYEFLISENHTTFNPVLNVDLPKYQNKLPEILSIDQIKSLLE- 119 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-------LRIQGK 193 + S + R +A+++LLY GLR+SE +SL +I+ ++++ + GK Sbjct: 120 ---YCSQDNSPEGIRLNAMIHLLYASGLRVSELVSLKLSDILTNKTSKGEVRKIFSVLGK 176 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LF--RGIRGKPLNPGVFQRY 246 G+K R++ + +I +Y L D+ +N P LF + G + F Sbjct: 177 GNKERVIVINEQAVISIAKY--LAIRDIFVNKAKPKNLIYLFPSSALTGY-MTRQNFAIL 233 Query: 247 IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 ++ Y L P + H LRHSFA+HLL G DLR IQ +LGH +STTQIYT++ + Sbjct: 234 LKSAALYANLNPEHVSPHILRHSFASHLLEGGADLRVIQDLLGHSDISTTQIYTHLQT 291 >gi|260771629|ref|ZP_05880549.1| tyrosine recombinase XerC [Vibrio metschnikovii CIP 69.14] gi|260613406|gb|EEX38605.1| tyrosine recombinase XerC [Vibrio metschnikovii CIP 69.14] Length = 309 Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 84/306 (27%), Positives = 152/306 (49%), Gaps = 22/306 (7%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L E+GLS T ++Y+ Q L +A + + + + + +R SK + Sbjct: 23 LRSEKGLSLHTQRNYQ----QQLQAMAGHLHH-LGVSEWQHVDAAWVRQLASKGMRDGMK 77 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN---EKQALTLVDNV 141 SL LS ++SF +L R + + + +K LP+ L+ Q L + DN Sbjct: 78 ASSLATRLSSLRSFFDFLILRGELSANPAKGVSAPRKQRPLPKNLDVDEMAQLLEVTDND 137 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 L R+ A++ L+YG GLR++E +++ +++ + +R+ GKGDK R VP Sbjct: 138 PL---------SIRDRAMMELMYGAGLRLAELVAINLKDLSFSRGEIRVIGKGDKERKVP 188 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 ++ + ++ + L ++ LF G ++ Q+ + + + + Sbjct: 189 FSGQAKEWVGKWLKVRDSLLK-GEEVALFISKLGGRISHRSVQKRMAEWGHKQSVASHIS 247 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321 H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ ++ + E+YDQ HP Sbjct: 248 PHKLRHSFATHVLESSNNLRAVQELLGHENISTTQIYTHLDFQH----LAEVYDQAHPRA 303 Query: 322 TQKDKK 327 +K K+ Sbjct: 304 KKKTKE 309 >gi|94495775|ref|ZP_01302355.1| integrase [Sphingomonas sp. SKA58] gi|94425163|gb|EAT10184.1| integrase [Sphingomonas sp. SKA58] Length = 310 Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 86/306 (28%), Positives = 147/306 (48%), Gaps = 28/306 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECD-TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +L+ + ERG S+ TL +Y D T + K + T+ Sbjct: 12 FLEMMAAERGASRNTLLAYRTDLTGAGGLLGGLAGASKEGLGTL-------------ATH 58 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + S+ R S +++F +L++ + ++ + + LP+ L+ + L Sbjct: 59 WASLAGSSVARKASALRAFYGFLEEEGLRADNPSVALPRPVTRRPLPKILSTTEVDRLFA 118 Query: 140 NVL--LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 + L +H +D R SA++ LLYG GLR +E +SL + + D+ L ++GKG + Sbjct: 119 LIAERLEVAHPAP-LDLRLSALIELLYGSGLRATELVSLPRRALAADRPFLILKGKGARE 177 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL- 256 R+VP+ R A+ + P D LF + ++Q ++ L G+ Sbjct: 178 RLVPISDRARAAVSAWLVHVPGDSAW-----LFPSGKSHLSRIRLYQ-LVKALAGAAGIA 231 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 P + H LRH+FATHLL G DLR++Q++LGH + TTQIYT+V+S+ ++E+ +Q Sbjct: 232 PERVSPHVLRHAFATHLLEGGADLRALQAMLGHADIGTTQIYTHVDSRR----LVELVNQ 287 Query: 317 THPSIT 322 HP T Sbjct: 288 RHPLAT 293 >gi|220917358|ref|YP_002492662.1| tyrosine recombinase XerD [Anaeromyxobacter dehalogenans 2CP-1] gi|219955212|gb|ACL65596.1| tyrosine recombinase XerD [Anaeromyxobacter dehalogenans 2CP-1] Length = 298 Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 91/300 (30%), Positives = 155/300 (51%), Gaps = 15/300 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L ++ +E+GL++ ++++Y D R++L L +++ + ++ EI+A +++ Sbjct: 11 FLAHVRVEKGLAENSVEAYGRDLRRYLEHL-----DELGVDAWERVGRGEIQAHLAELVR 65 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + RS R+LS I+S + L ++T + + + LP L+ + VD Sbjct: 66 RGLSPRSQARALSAIRSLHRLLAAERVTPADPSDEIESPRPGRRLPGLLSHDE----VDR 121 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LL R+ A+L LLY GLR+SE +SL ++ + L +GKG+K RIV Sbjct: 122 -LLAAPDVRSAAGIRDRAMLELLYATGLRVSELVSLQLNDVNLETRVLVARGKGNKERIV 180 Query: 201 PLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ A+ Y + L + LF RG + F + + + R G+ Sbjct: 181 PVGAPAAAAVKAYLAVARERLLHGRRSKDLFVTPRGGRMTRQGFAKILDRCARRAGIRRR 240 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H LRHSFATHLL G DLR++Q +LGH +STTQIYT+V+ + + +YD+ HP Sbjct: 241 ISPHKLRHSFATHLLEGGADLRAVQEMLGHADVSTTQIYTHVDRTH----VKRLYDRFHP 296 >gi|241667911|ref|ZP_04755489.1| phage integrase family protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876451|ref|ZP_05249161.1| phage integrase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842472|gb|EET20886.1| phage integrase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 293 Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 84/312 (26%), Positives = 147/312 (47%), Gaps = 35/312 (11%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 N+L NL + S+ T+ +Y D Q I + I +L +I ++ K Sbjct: 9 NFLDNLLYLKNYSQETINNYRRDLLQL--------NSSIVDKDITKLENNDILMWVKKLH 60 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q ++L+R LS ++SF +L ++ + ++ K S LP+A+N + L+D Sbjct: 61 AQGNSSKTLQRKLSSLRSFFNFLINSELIKNNPTTGIKAPKSSKKLPKAVNTDELAYLLD 120 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + I+ R+ A LLY CG+R+SE S+ ++I +Q ++R+ GKG+K R+ Sbjct: 121 ------IKPSNNIETRDIACFDLLYSCGIRLSELSSIELKDININQKSIRVIGKGNKERV 174 Query: 200 VPLLPSVRKAILEYYDL-------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 V + + ++ C + LF G+ L Q+ I + Sbjct: 175 VYFGSKTLINLNRWLNIRDTYSPKCNY---------LFISQNGEHLTNRSIQKRIEIFAK 225 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 H LRHSFATH+L + DL +++ +LGH +S+TQIYT++N + + Sbjct: 226 KYATK-HIHPHMLRHSFATHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQ----LAS 280 Query: 313 IYDQTHPSITQK 324 ++D+ HP +K Sbjct: 281 VFDKAHPRAKKK 292 >gi|332283336|ref|YP_004415247.1| site-specific tyrosine recombinase XerD [Pusillimonas sp. T7-7] gi|330427289|gb|AEC18623.1| site-specific tyrosine recombinase XerD [Pusillimonas sp. T7-7] Length = 282 Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 82/282 (29%), Positives = 137/282 (48%), Gaps = 23/282 (8%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA-FISKRRTQKIGD 85 +E GL++ TL +Y D F ++L +T+ Q +I+ F +K + K Sbjct: 1 MEDGLAQNTLSAYRRDLSAFALWL-----HAKPGKTLEQADAADIQDWFAAKHASTKA-- 53 Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 + R L+ +K + + ++ + + L +R K++ P+ ++E Q + LL Sbjct: 54 TTANRRLAALKRYYLWAMRQGLVAKDPCLTLRAAKQAARFPKTMSEDQV-----DALLQA 108 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLP 204 + + R+ A+L LY GLR+SE ++L ++ + +R+ QGKG K R+VPL Sbjct: 109 PDDNSPLGLRDRAMLETLYATGLRVSELINLELLDVSLTEGVVRVTQGKGGKDRLVPLGD 168 Query: 205 SVRKAILEYYDLC-----PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 L + DL P L LF R + F +++ + Sbjct: 169 EA----LHWIDLYAKQSRPGLLGQRRCNALFVTARAAAMTRQSFWLIVKKYAALADIHTP 224 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + H LRH+FATHLL++G DLR +Q +LGH +STTQIYT+V Sbjct: 225 LSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHV 266 >gi|46446092|ref|YP_007457.1| site-specific tyrosine recombinase XerC [Candidatus Protochlamydia amoebophila UWE25] gi|46399733|emb|CAF23182.1| putative XerC Protein [Candidatus Protochlamydia amoebophila UWE25] Length = 329 Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 78/257 (30%), Positives = 126/257 (49%), Gaps = 19/257 (7%) Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 IR F++ + R++ R LS ++SF +YL+ + + + + + K + LP +L+ Sbjct: 82 IRGFLAWLSANQQNKRTIARRLSSLRSFFRYLQTQNLIQINPTEELESPKLNKKLPVSLS 141 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 +Q ++L T ++ R+ I+ L Y GLR+SE +SL Q+ T+++ Sbjct: 142 YEQV-----SLLFEQPDTTSYLGFRDRTIMELFYSSGLRVSELVSLDRQDFDYSNLTIKL 196 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--------PLFRGIRGKPLNPGV 242 +GKG K R++P+ + K I Y L + N++ +F G L Sbjct: 197 KGKGKKQRLIPITKNAAKWIQSY--LLHIERYQNLETHSAESDSNAIFLNKWGTRLTTRS 254 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 R GL T HT+RH+ ATH L NG DL++IQ +LGH LSTT IYT V+ Sbjct: 255 VDRKFDLYLTKSGLAGKVTPHTIRHTIATHWLENGMDLKTIQLLLGHRSLSTTTIYTQVS 314 Query: 303 SKNGGDWMMEIYDQTHP 319 +K ++Y HP Sbjct: 315 TK----LKQKVYADAHP 327 >gi|229593315|ref|YP_002875434.1| site-specific tyrosine recombinase XerC [Pseudomonas fluorescens SBW25] gi|259710435|sp|C3K438|XERC_PSEFS RecName: Full=Tyrosine recombinase xerC gi|229365181|emb|CAY53449.1| tyrosine recombinase [Pseudomonas fluorescens SBW25] Length = 299 Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 93/310 (30%), Positives = 149/310 (48%), Gaps = 29/310 (9%) Query: 17 ERQ--NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 ERQ + +L ER +S TL++Y D + L + EK I + + L +R+ Sbjct: 2 ERQLDAYCAHLRNERQVSPHTLEAYRRDLNKVLAYC-----EKQQISSWKALDIQSLRSL 56 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 I++ RSL R LS ++ YL + + + K LP+ L+ +A Sbjct: 57 IARLHQAGQSSRSLSRLLSAVRGLYHYLNREGLCDHDPANGLSPPKGERRLPKTLDTDRA 116 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 L L+D + E ++ R+ AIL L Y GLR+SE L + +++ GKG Sbjct: 117 LQLLDGAV-----EDDFLAHRDQAILELFYSSGLRLSELTGLNLDQLDLADGLVQVLGKG 171 Query: 195 DKIRIVPLLPSVRKAILEYYDLC----PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 K R++P+ R+A+ + L P D +F +G+ L P Q ++ Sbjct: 172 SKTRVLPVGRKAREALQLWLPLRLLTNPADD------AVFVSQQGRRLGPRAIQVRVKAA 225 Query: 251 -RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 R LG L H LRHSFA+H+L + DLR++Q +LGH + TTQIYT+++ ++ Sbjct: 226 GERELGQNLHP--HMLRHSFASHMLESSQDLRAVQELLGHSDIKTTQIYTHLDFQH---- 279 Query: 310 MMEIYDQTHP 319 + +YD HP Sbjct: 280 LATVYDSAHP 289 >gi|297621664|ref|YP_003709801.1| Site-specific tyrosine recombinase XerC [Waddlia chondrophila WSU 86-1044] gi|297376965|gb|ADI38795.1| Site-specific tyrosine recombinase XerC [Waddlia chondrophila WSU 86-1044] Length = 301 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 82/304 (26%), Positives = 150/304 (49%), Gaps = 20/304 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLA--FYTEEKITIQTIRQLSYTEIRAFISKR 78 ++ L + + S+ T+++Y D F L + ++E + I + +IR F++ Sbjct: 11 FIHQLRVVKNASEHTIRNYAIDLNIFKQHLEQEWQSDEDFALNRIER---RQIRGFLAMM 67 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 ++ R++ R LS +++F K+ ++ T + I + + K ++P L+ Q L Sbjct: 68 NSKGASKRTILRRLSSLRTFFKWAFANQLITSNPIEEIESPKLEKTIPTPLSYTQVEHLF 127 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + T + +R+ ++ L Y GLR+SE + L ++ ++++GKG K R Sbjct: 128 SLPEIET-----LLGSRDRCMMELFYSSGLRVSELVGLNKNDVDITTRLMKVRGKGKKER 182 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL---G 255 ++P+ + I +Y + +F G L+ + R +RYL G Sbjct: 183 VIPVTHNAVYWIQKYLRHPERKFSCEENHAIFLNKLGTRLS---VRSVDRNFKRYLIKSG 239 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 L + T HT+RH+ ATH L NG DL++IQ++LGH LS+T IYT+V++ +IY Sbjct: 240 LGGNVTPHTIRHTIATHWLENGMDLKTIQTLLGHESLSSTTIYTHVDA----TLKRKIYK 295 Query: 316 QTHP 319 Q HP Sbjct: 296 QAHP 299 >gi|59713090|ref|YP_205866.1| site-specific tyrosine recombinase XerC [Vibrio fischeri ES114] gi|197336470|ref|YP_002157268.1| tyrosine recombinase XerC [Vibrio fischeri MJ11] gi|59481191|gb|AAW86978.1| site-specific tyrosine recombinase [Vibrio fischeri ES114] gi|197317960|gb|ACH67407.1| tyrosine recombinase XerC [Vibrio fischeri MJ11] Length = 303 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 91/325 (28%), Positives = 163/325 (50%), Gaps = 28/325 (8%) Query: 6 LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65 + +++ + K + + L E+GLS T ++Y+ RQ E + +++ + Sbjct: 1 MSDVLPVQFSKHLDAFYEFLRNEKGLSIYTQRNYK---RQLTTIAEQLVE--LGVESWQD 55 Query: 66 LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 + +R SK + + SL LS ++SF +L R + T + + +KS L Sbjct: 56 VDAGWVRQVTSKGMREGLKASSLSTRLSSLRSFFDFLVLRNVLTANPAKGVSAPRKSRPL 115 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 P+ ++ + L++ +E + R+ AI+ L+YG GLR++E +S+ ++I Q Sbjct: 116 PKNIDVDEMGQLLE------VNEDDPLSIRDRAIMELMYGAGLRLAELVSIDVRDIQLRQ 169 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVF 243 LR+ GKGDK R VP ++ + + L + QL P +G+ L + Sbjct: 170 GELRVIGKGDKERKVPFSGQAKEWLGHW-------LRVRNQLAKPEEKGLFVSKLGVRIS 222 Query: 244 QRYIRQLRRYLGLPLSTTAH----TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 R +++ GL +H LRHSFATH+L + G+LR++Q +LGH +STTQIYT Sbjct: 223 HRNVQKRMAEWGLKQGVNSHISPHKLRHSFATHMLESSGNLRAVQELLGHENISTTQIYT 282 Query: 300 NVNSKNGGDWMMEIYDQTHPSITQK 324 +++ ++ + + YDQ HP +K Sbjct: 283 HLDFQH----LAQAYDQAHPRAKKK 303 >gi|269795657|ref|YP_003315112.1| tyrosine recombinase XerC subunit [Sanguibacter keddieii DSM 10542] gi|269097842|gb|ACZ22278.1| tyrosine recombinase XerC subunit [Sanguibacter keddieii DSM 10542] Length = 310 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 85/325 (26%), Positives = 148/325 (45%), Gaps = 31/325 (9%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 + P + +L+E + +L +RGLS+ T+++Y D F ++ + Sbjct: 6 GDAPSLDDVRVLEE---FSAHLTSQRGLSEHTVRAYASDLAGLSSF-----AHQVGAGPL 57 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 + +R ++++ + + ++ R + +++F + + + + + S Sbjct: 58 AAVGLDTLRGWLAQMAGRDLARSTVARRGAAVRAFYGWAVRSGRVGSDPSVRLGSPTVSK 117 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDA-----RNSAILYLLYGCGLRISEALSLTP 178 +LP L A L++ T +D R A + LLY G+R+ E +SL Sbjct: 118 TLPTVLAVDSATALMETA------RTAAVDGDPAALRAWACVELLYATGVRVGELVSLDL 171 Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKP 237 Q++ D ++R+ GKGDK R+VP A+ + D P + +F G RG+ Sbjct: 172 QDVDLDTRSVRVVGKGDKERVVPFGVPAATALRSWIEDGRPGLERGSGATAVFLGQRGQR 231 Query: 238 LNPGVFQRYIRQLRRYLGLPLST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 QR +R+ L S H LRHS ATHLL+ G DLR++Q +LGH LST Sbjct: 232 WG----QRQVRETVHRLSAAASVDDVAPHDLRHSAATHLLNGGSDLRTVQEVLGHSTLST 287 Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHP 319 TQ YT+V+++ + Y HP Sbjct: 288 TQRYTHVSAER----LRSSYQLAHP 308 >gi|113968738|ref|YP_732531.1| tyrosine recombinase XerC [Shewanella sp. MR-4] gi|117918850|ref|YP_868042.1| tyrosine recombinase XerC [Shewanella sp. ANA-3] gi|123130813|sp|Q0HN93|XERC_SHESM RecName: Full=Tyrosine recombinase xerC gi|171460757|sp|A0KS67|XERC_SHESA RecName: Full=Tyrosine recombinase xerC gi|113883422|gb|ABI37474.1| tyrosine recombinase XerC [Shewanella sp. MR-4] gi|117611182|gb|ABK46636.1| tyrosine recombinase XerC [Shewanella sp. ANA-3] Length = 299 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 88/313 (28%), Positives = 162/313 (51%), Gaps = 24/313 (7%) Query: 19 QNWLQNLEI----ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 Q++LQ E ER LS T+++Y + ++ L E + + + + + ++ Sbjct: 6 QSYLQQFETYMQSERQLSAHTVRNYMYELQRGSELLP----EGVDLLNVGREHWQQV--- 58 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 ++K + + RSL LS IK + ++L + + + + K++ LP+ ++ Sbjct: 59 LAKLHRKGLSPRSLSLWLSAIKQWGEFLLRSGVIELNPAKGLSAPKQAKPLPKNID---- 114 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 + + ++L ++ + R+ AI+ L Y GLR++E +L ++ DQ +R+ GKG Sbjct: 115 VDSISHLLAIEGNDP--LTLRDKAIMELFYSSGLRLAELAALDLSSVQYDQHEVRVLGKG 172 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 +K RIVP+ +AI + C ++ LF +GK L+ Q + + + Sbjct: 173 NKERIVPVGRYAIEAISAWLK-CRKQISCEDN-ALFVTEKGKRLSHRSIQARMSKWGQEQ 230 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 L + H LRHSFATH+L + DLR++Q +LGH LSTTQIYT+++ ++ + ++Y Sbjct: 231 ALSMRVHPHKLRHSFATHMLESSADLRAVQELLGHENLSTTQIYTSLDFQH----LAKVY 286 Query: 315 DQTHP-SITQKDK 326 D HP + Q+DK Sbjct: 287 DNAHPRAKKQQDK 299 >gi|313123911|ref|YP_004034170.1| tyrosine recombinase xerc [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280474|gb|ADQ61193.1| Tyrosine recombinase xerC [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 295 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 82/286 (28%), Positives = 140/286 (48%), Gaps = 12/286 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L+ ER S T+ +Y+ D L + +E Q+S ++ ++ Sbjct: 5 EQFLSYLKNERSYSPKTVLAYQKD----LAAAKKFWQENGGFPGWDQISRRDLEIYLLAT 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 QK+ +L R LS +KSF + L +R + + ++ + LP + + ++ Sbjct: 61 -GQKLASSTLSRKLSSLKSFYRLLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQVI 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 ++ ++ K + RN AI+ L Y G+R+SE L + + + + + GKG+K R Sbjct: 120 RSL-----NDGKPLTVRNRAIVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNKDR 174 Query: 199 IVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 V +K + EY L N +F G+P++ + ++Q+ + GL Sbjct: 175 YVFFDQESKKYLEEYLQAARPSLLKNEPDTEAVFLNKLGRPISSRGIAKAVQQIFQKAGL 234 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 H LRHSFAT +L+NG DLRS+Q +LGH LSTTQIYT+V+ Sbjct: 235 TAGAHPHELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVS 280 >gi|262172887|ref|ZP_06040565.1| tyrosine recombinase XerC [Vibrio mimicus MB-451] gi|261893963|gb|EEY39949.1| tyrosine recombinase XerC [Vibrio mimicus MB-451] Length = 310 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 83/304 (27%), Positives = 154/304 (50%), Gaps = 20/304 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L E+GLS T ++Y+ +LA ++ + + QL +R + + Q + Sbjct: 24 LHSEKGLSLYTQRNYKQQLETMARYLA-----QMGLTSWPQLDAAWVRQLVVLGKRQGMK 78 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--L 142 S+ LS ++SFL +L R + + +K LP+ L+ VD + L Sbjct: 79 ASSISTRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRPLPKNLD-------VDEMAQL 131 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202 L S + + R+ AI+ L+YG GLR++E +S+ +++ +R+ GKG+K R V Sbjct: 132 LEVSDDDP-LSIRDRAIMELMYGSGLRLAELVSIDVKDVNLRDGEIRVIGKGNKERKVWF 190 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 ++ + ++ L N + + LF G ++ Q+ + + + + + Sbjct: 191 AGQAQEWVGKWLKLRSQLANSD-ETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322 H LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ ++ + ++YDQ HP Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQH----LAQVYDQAHPRAR 305 Query: 323 QKDK 326 +K+K Sbjct: 306 KKNK 309 >gi|304413311|ref|ZP_07394784.1| site-specific tyrosine recombinase [Candidatus Regiella insecticola LSR1] gi|304284154|gb|EFL92547.1| site-specific tyrosine recombinase [Candidatus Regiella insecticola LSR1] Length = 252 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 80/252 (31%), Positives = 126/252 (50%), Gaps = 11/252 (4%) Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 +++ F ++R S R LS IK F +YL + K+ + + K LP+ L Sbjct: 8 DLQRFFAERIDSHYKATSSARLLSAIKRFFQYLYREKLRINDPTALLSSPKLPQRLPKDL 67 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 +EKQ LL+ + + R+ +L +LY GLR+SE + L +I Q LR Sbjct: 68 SEKQV-----EALLNAPNVDIPLQLRDKTMLEVLYATGLRVSELVGLIISDISLRQGVLR 122 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 + GKG+K R+VPL I +Y + P+ +N F R + + F I+ Sbjct: 123 VIGKGNKERLVPLGEEALYWIEQYIEHGRPWLVNGQALDAFFPSNRCQKMTRQTFWYRIK 182 Query: 249 QLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 + + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ Sbjct: 183 HYAILANIDSERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSNLSTTQIYTHVATER-- 240 Query: 308 DWMMEIYDQTHP 319 + +++ + HP Sbjct: 241 --LKQLHQRHHP 250 >gi|300775996|ref|ZP_07085855.1| tyrosine recombinase XerC [Chryseobacterium gleum ATCC 35910] gi|300505129|gb|EFK36268.1| tyrosine recombinase XerC [Chryseobacterium gleum ATCC 35910] Length = 306 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 83/311 (26%), Positives = 150/311 (48%), Gaps = 22/311 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ LE E+ S T+ SY+ D F F TE + + + IR FI + Sbjct: 14 EKFLEYLEFEKRYSPHTVTSYKKDLEDFSHFF-LRTE---SSDNLAKADKKIIRNFIVEL 69 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKR---KITTESNILNMRNLKKSNSLPRALNEKQAL 135 I RS+ R LS ++SF +L K K++ I +++ +P + K+ + Sbjct: 70 SEHNISKRSINRKLSSLRSFYLFLLKIGEIKVSPTEGISSLK-FYAEKQIPMS---KEEM 125 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 +++ + H D I+ +LY G+R +E L +N+ L+I GKG+ Sbjct: 126 ADLNDRVFEQVH-----DVLEKCIMEVLYQTGMRKAELCGLIFENVDLYGKELKIIGKGN 180 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 K R+VP+ + + + Y ++ + + F +GK LN + + + Sbjct: 181 KERVVPISSELAELLTSYLEIR--NPQTEYKSYFFVNKKGKKLNEKFVYVVVNKYLSLIT 238 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H LRHSFATH+L NG ++ ++ ILGH L++TQ+YTN N + + ++++ Sbjct: 239 TKEKKSPHILRHSFATHVLDNGAEISKVKKILGHSSLASTQVYTNANI----EQLKKVFN 294 Query: 316 QTHPSITQKDK 326 Q HP ++K++ Sbjct: 295 QAHPRASKKEE 305 >gi|258653281|ref|YP_003202437.1| integrase [Nakamurella multipartita DSM 44233] gi|258556506|gb|ACV79448.1| integrase family protein [Nakamurella multipartita DSM 44233] Length = 336 Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 88/325 (27%), Positives = 150/325 (46%), Gaps = 26/325 (8%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 L+++ + + L ER S T+ +Y D L L T ++ T L+ +R+ Sbjct: 17 LVRDLERYRTFLSAERNRSPATVTAYLADLVSLLDHLGRMTGDRPAELT--DLTLPVLRS 74 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 +++++RT +L R + +SF + + + + + +LP L Q Sbjct: 75 WLARQRTTGAARATLARRAAAARSFCAWAHRTGRLPQDVGARLAAPRADKTLPAVLRADQ 134 Query: 134 ALTLVDNVLLHTSHET-----------------KWIDARNSAILYLLYGCGLRISEALSL 176 A ++D + ++ + + R+ AIL LLY G+R+SE L Sbjct: 135 AHQMLDAPAVSAPDQSPDTGTGTGTGTGTSAVEQAMARRDQAILELLYASGIRVSELTGL 194 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRG 235 I + +R+ GKG+K R VP +A+ ++ D P + +F G RG Sbjct: 195 NLDAIDRHRRVIRVLGKGNKQRTVPFGLPADRALGDWLDRGRPVLADDESGAAVFLGRRG 254 Query: 236 KPLNPGVFQRYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 + ++P + + R+ G P H LRH+ ATHLL G DLR++Q +LGH L+T Sbjct: 255 RRIDPRAVRTLVHRRTAAVDGAP-EIAPHGLRHTAATHLLEGGADLRTVQELLGHASLAT 313 Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHP 319 TQIYT+V+++ + IY Q HP Sbjct: 314 TQIYTHVSTER----LAAIYRQAHP 334 >gi|15617948|ref|NP_224232.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae CWL029] gi|15835561|ref|NP_300085.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae J138] gi|16753021|ref|NP_445294.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae AR39] gi|33241363|ref|NP_876304.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae TW-183] gi|34223089|sp|Q9Z9F7|XERC_CHLPN RecName: Full=Tyrosine recombinase xerC gi|4376276|gb|AAD18177.1| Integrase/recombinase [Chlamydophila pneumoniae CWL029] gi|8163493|gb|AAF73701.1| integrase/recombinase, phage integrase family [Chlamydophila pneumoniae AR39] gi|8978399|dbj|BAA98236.1| integrase/recombinase [Chlamydophila pneumoniae J138] gi|33235871|gb|AAP97961.1| site-specific integrase/recombinase [Chlamydophila pneumoniae TW-183] Length = 312 Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 89/313 (28%), Positives = 145/313 (46%), Gaps = 22/313 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLA------------FYTEE-KITIQTIRQL 66 ++L L++ + S TL++Y D IFL TE+ K++ Sbjct: 7 SFLDYLKMVKSASPHTLRNYCLDLNGLKIFLEERGNLAPSSPLQLATEKRKVSELPFSLF 66 Query: 67 SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126 + +R +I+K R++KR LS IKSF Y +KI E+ + + LP Sbjct: 67 TKEHVRMYIAKLIENGKAKRTIKRCLSSIKSFAHYCVIQKILLENPAETIHGPRLPKELP 126 Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 + Q VL+ T +K+ R+ ++ L Y GLRISE +++ Q+ Sbjct: 127 SPMTYAQV-----EVLMATPDISKYHGLRDRCLMELFYSSGLRISEIVAVNKQDFDLSTH 181 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 +RI+GKG K RI+P+ + + I Y + +F G+ ++ R Sbjct: 182 LIRIRGKGKKERIIPVTSNAIQWIQIYLNHPDRKRLEKDPQAIFLNRFGRRISTRSIDRS 241 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 ++ R GL T HT+RH+ ATH L +G DL++IQ++LGH L TT +YT V+ K Sbjct: 242 FQEYLRRSGLSGHITPHTIRHTIATHWLESGMDLKTIQALLGHSSLETTTVYTQVSVK-- 299 Query: 307 GDWMMEIYDQTHP 319 + + + HP Sbjct: 300 --LKKQTHQEAHP 310 >gi|226306026|ref|YP_002765986.1| tyrosine recombinase XerC [Rhodococcus erythropolis PR4] gi|226185143|dbj|BAH33247.1| tyrosine recombinase XerC [Rhodococcus erythropolis PR4] Length = 310 Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 86/317 (27%), Positives = 148/317 (46%), Gaps = 18/317 (5%) Query: 6 LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65 LP +S L + ++L + RG S+ T+++Y D R L + +E + + Sbjct: 7 LPASLSVHL----DAYAEHLRLSRGRSEHTIRAYVGDARALLTHFSAGSENA----DLDR 58 Query: 66 LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 L + +R++++ + ++ R S + F +L + + + +L Sbjct: 59 LDLSVMRSWLAAQNAVGTARTTVARRASSARGFTAWLAQTGRISVDPGTRLAAPPARRTL 118 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 P L + QAL +D + + + + R+ I+ LLY G+R+ E L +++ D+ Sbjct: 119 PTVLRQSQALDAMDAAE-SGAQQQEPLALRDRLIVELLYSTGIRVGELCGLDVESVDADR 177 Query: 186 STLRIQGKGDKIRIVPL-LP--SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242 LR+ GKG+K R VP LP S LE+ P + L G+RG L+ Sbjct: 178 RLLRVLGKGNKERSVPYGLPAESALNGWLEHGR--PALSSDRSGRALLLGVRGGRLDQRQ 235 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + + + + H LRHS ATHLL G DLR +Q +LGH L+TTQ+YT+V+ Sbjct: 236 ARSVVHETMAAIPGAPDMGPHGLRHSAATHLLEGGADLRVVQELLGHASLATTQLYTHVS 295 Query: 303 SKNGGDWMMEIYDQTHP 319 + + ++DQ HP Sbjct: 296 VER----LRSVHDQAHP 308 >gi|227893507|ref|ZP_04011312.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047] gi|227864677|gb|EEJ72098.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047] Length = 302 Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 81/288 (28%), Positives = 143/288 (49%), Gaps = 14/288 (4%) Query: 17 ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 E ++++ L+ ER S T+ SY D L+ + +E +++ +++ ++ Sbjct: 7 ELEHFISYLQNERHYSSKTVLSYRTD----LLEAKKFWQENGGFNGWIKVNERDVQVYLQ 62 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT--TESNILNMRNLKKSNSLPRALNEKQA 134 +K+ S +R +S + SF ++L +R+I + + +R +K LP + + Sbjct: 63 HLADRKLARSSQQRQMSSLHSFYRFLTRRRIIKIDPTQAITLRRGEKK--LPEFFYQPEI 120 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 + D++ K + RN A+ L Y G+R+SE LT + I T+ + GKG Sbjct: 121 KQVFDSL-----QGNKPLTVRNLALFELFYATGMRVSEVSGLTLKQIDLSLQTILVHGKG 175 Query: 195 DKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 +K R V +K+++ Y + P L + +F GKP++ Q +++ Sbjct: 176 NKDRYVAFDDRTKKSLVNYLENARPKLLKDETEQHVFLSNLGKPISDRGIQYVMQKTFNQ 235 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G+ H LRH+FAT +L+NG DLRS+Q +LGH LS TQIYT+V Sbjct: 236 AGISGKVHPHELRHTFATAMLNNGADLRSVQELLGHSDLSATQIYTHV 283 >gi|167835679|ref|ZP_02462562.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis MSMB43] Length = 320 Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 84/277 (30%), Positives = 135/277 (48%), Gaps = 15/277 (5%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 +E GLS+ TL +Y D + F +LA ++ + + +I+ R K Sbjct: 41 LEHGLSRNTLDAYRRDLQLFAQWLAARH-----AASLDRAERPMLEGYIAARSDGKA--T 93 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R LS + + + + T L + + K++ P L+E Q V+ +L Sbjct: 94 SSNRRLSVFRRYYGWAVREHRTAVDPTLRIASAKQAPRFPSTLSEAQ----VEALLAAPD 149 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 +T + R+ +L L+Y GLR+SE ++L + ++ +R+ GKG K R+VP V Sbjct: 150 VDTP-LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPF-GEV 207 Query: 207 RKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 +E Y P L LF RG + F I++ + + + + HT Sbjct: 208 AHGWIERYLRGARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHT 267 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 LRH+FATHLL++G DLR +Q +LGH +STTQIYT+V Sbjct: 268 LRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 304 >gi|238793576|ref|ZP_04637200.1| Tyrosine recombinase [Yersinia intermedia ATCC 29909] gi|238727166|gb|EEQ18696.1| Tyrosine recombinase [Yersinia intermedia ATCC 29909] Length = 276 Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 70/264 (26%), Positives = 133/264 (50%), Gaps = 12/264 (4%) Query: 56 EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115 E++ + + L ++R+ +S+ + + SL LS ++SFL +L + + + Sbjct: 18 EQMGLMHWQTLDAAQVRSLVSRSKRAGLHSSSLALRLSALRSFLDWLVSQGVLQANPAKG 77 Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175 + + LP+ ++ + L+D L + R+ A+L ++YG GLR+SE + Sbjct: 78 VSTPRSGRHLPKNIDVDEVDKLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVG 131 Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235 + +++ + + GKG K R VP+ + + + +L +L + +F G Sbjct: 132 MNCKHVDLASGEVWVMGKGSKERKVPIGRTAVTWLAHWLEL--RELFEPVDDAIFLANTG 189 Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 K ++ Q+ + G+ H LRHSFATH+L + GDLR++Q +LGH L+TT Sbjct: 190 KRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTT 249 Query: 296 QIYTNVNSKNGGDWMMEIYDQTHP 319 QIYT+++ ++ + +YD HP Sbjct: 250 QIYTHLDFQH----LATVYDAAHP 269 >gi|328472418|gb|EGF43284.1| site-specific tyrosine recombinase XerC [Vibrio parahaemolyticus 10329] Length = 310 Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 85/301 (28%), Positives = 152/301 (50%), Gaps = 16/301 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L E+GLS T ++Y +Q L +A + E + ++ Q+ +R K + + Sbjct: 24 LRSEKGLSLHTQRNY----KQQLETMAQHLAE-MGLKDWSQVDAGWVRQLAGKGMREGMK 78 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 SL LS ++SF +L R + + + +K LP+ L+ + N LL Sbjct: 79 ASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEV-----NQLLE 133 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + E + R+ A++ L+YG GLR++E +S+ +++ LR+ GKGDK R VP Sbjct: 134 VN-EDDPLAIRDRAMMELMYGAGLRLAELVSVDVRDVQLRSGELRVIGKGDKERKVPFSG 192 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 + + ++ + DL + LF G ++ Q+ + + + + + H Sbjct: 193 MATEWVGKWLRVR-GDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQKQSVASHISPHK 251 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ ++ + + YDQ HP +K Sbjct: 252 LRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQH----LAQAYDQAHPRARKK 307 Query: 325 D 325 + Sbjct: 308 N 308 >gi|255764498|ref|YP_003065000.2| site-specific tyrosine recombinase XerD [Candidatus Liberibacter asiaticus str. psy62] gi|254547849|gb|ACT57060.2| site-specific tyrosine recombinase XerD [Candidatus Liberibacter asiaticus str. psy62] Length = 300 Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 88/305 (28%), Positives = 156/305 (51%), Gaps = 15/305 (4%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87 ER S TL +Y+ D ++ FL ++I++ S + ++++ +K+ S Sbjct: 5 ERASSINTLSAYKRDLKEMQNFL---NNKEISLSAA---STNHLISYLNHLSQRKLVTSS 58 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 +R +S I+ F +L + ++ + KK++ LP+ L++ L++ + + Sbjct: 59 QRRKISVIRQFYNFLCYEGLRKDNPSDTLELPKKNHILPKTLHKDTIANLLEQAKIEAEN 118 Query: 148 ET--KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 +W R ++ LLY G+R+SE ++L+ + + T+ IQGKG+K R+V L PS Sbjct: 119 PAPGQWKRVRIFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQGKGNKERLVILSPS 178 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLF-RGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAH 263 A+ Y C L LF + L+ VF R ++ L G+ + + H Sbjct: 179 ALHALQMYKKTCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISPH 238 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323 +RH+FA+HLL G DLR+IQ +LGH +STTQIYT++ D + ++ HP + + Sbjct: 239 IIRHAFASHLLEGGADLRTIQILLGHTDISTTQIYTHL----LPDKLQKLVQDYHP-LAK 293 Query: 324 KDKKN 328 K+KK+ Sbjct: 294 KEKKH 298 >gi|300115010|ref|YP_003761585.1| integrase family protein [Nitrosococcus watsonii C-113] gi|299540947|gb|ADJ29264.1| integrase family protein [Nitrosococcus watsonii C-113] Length = 310 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 88/311 (28%), Positives = 147/311 (47%), Gaps = 31/311 (9%) Query: 11 SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70 + + + R+++L +L +G S+ T +Y D + +LA + RQ ++ + Sbjct: 5 AVDFWQARKDFLAHLHYAKGYSQGTCYAYNSDLGIWGRWLAEAGND------WRQATHVD 58 Query: 71 IRAFIS-KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 F++ + R + + R S + SF K+ K + I K+ +P L Sbjct: 59 TEQFVAWQMRERGTKAHIVARRSSCLGSFYKWAMKNALVESDPIYLADKPKRPYRIPVWL 118 Query: 130 NEKQALT----------LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 +++ L L +N+ HT K + R + L+ GLRISEAL++ + Sbjct: 119 EKEEQLAFQEAVQRTEDLPENIFGHTRAHIKTVRRRYDVLFGLILNSGLRISEALAVKVR 178 Query: 180 NIM---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIR 234 ++ ++RI GKG++ R+VPL P +L + D D +F Sbjct: 179 DVRVVNGIAKSVRIIGKGNRERLVPL-PEAFGQVLGAWLQDRAVGDF-------VFAKAP 230 Query: 235 G-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 G KPL P + Y+R+L G+ T H LRH++AT LL G +L IQ++LGH LS Sbjct: 231 GEKPLGPHAVRAYLRRLIERAGIDKPVTPHKLRHTYATRLLEAGAELVDIQALLGHVDLS 290 Query: 294 TTQIYTNVNSK 304 TTQIYT+V+ + Sbjct: 291 TTQIYTHVSEE 301 >gi|254511455|ref|ZP_05123522.1| tyrosine recombinase XerD [Rhodobacteraceae bacterium KLH11] gi|221535166|gb|EEE38154.1| tyrosine recombinase XerD [Rhodobacteraceae bacterium KLH11] Length = 318 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 92/312 (29%), Positives = 146/312 (46%), Gaps = 28/312 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +L+ E G + TL +Y D + F +L + +I ++ Sbjct: 13 TFLEAQAAELGAANNTLLAYGRDLKDFADWLMRRK------SGFAEADRDQIEGYLIDCD 66 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q + + R LS IK ++ + + + ++ ++ LP+ L+ + VD Sbjct: 67 AQGLSRATRARRLSAIKQLYRFAFEEGWREANPAIQIKGPGRAKRLPKTLDVPE----VD 122 Query: 140 NVLLHTSHETKWIDA---RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 LL + T A RN+ ++ LLY G+R++E +SL + D L + GKG K Sbjct: 123 R-LLEAARRTGRSAADRIRNTCLMELLYATGMRVTELVSLPVSSARGDPRMLLVLGKGGK 181 Query: 197 IRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLF----RGIRGKPLNPGVFQRYIR 248 R+VPL P R A+ E+ D + Q F RG G L F ++ Sbjct: 182 ERMVPLSPPARDALAEWLKQRDDAEERTVAKGGQASRFLFPSRGKSGY-LTRHRFFLLVK 240 Query: 249 QLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 +L G+ P T HTLRH+FATHLL+NG DLRSIQ++LGH ++TT+IYT+V + Sbjct: 241 ELAVEGGVSPAKVTPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHVLDER-- 298 Query: 308 DWMMEIYDQTHP 319 + E+ + HP Sbjct: 299 --LAELVLEHHP 308 >gi|291166237|gb|EFE28283.1| integrase-recombinase [Filifactor alocis ATCC 35896] Length = 307 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 88/304 (28%), Positives = 148/304 (48%), Gaps = 34/304 (11%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFL---AFYTEEKITIQTIRQLSYTEIRAFISK 77 +L+ E + L+ T++SY+ D +Q+++FL Y ++I + I L + R Sbjct: 10 YLKVCENQNNLNYKTVKSYKLDLKQYMVFLDKEENYYRKEILCKYIEMLHTKDYRV---- 65 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALT 136 +++KR ++ +K+F YL I + + +R LK+ LP+ + + Sbjct: 66 --------KTIKRKIATLKAFFSYLVYEDILEYNPFVKIRLRLKEPVILPKTI----PIV 113 Query: 137 LVDNVLLHTSHETKWID---------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 ++N+ E D +R+ IL +L G+RISE L + I + Sbjct: 114 YLENLFKCLYDERDNADKNTYKYKALSRDIIILEILISTGIRISELCDLRKEQISYSERM 173 Query: 188 LRIQGKGDKIRIVPLL-PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 +RI GKGDK RI+P+ ++ K I +Y +L L I+ F L+ + Sbjct: 174 IRIYGKGDKERILPVYNENLWKEIKQYEEL----FGLEIKGYFFINRINNKLSDQSVRNM 229 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 I++ + +P++ T H RH+FAT LL N D R+IQ ILGH ++TTQIYTN+ S Sbjct: 230 IKKNCKKASIPINITPHMFRHTFATLLLENDVDSRNIQQILGHSSITTTQIYTNITSNKK 289 Query: 307 GDWM 310 + M Sbjct: 290 IEIM 293 >gi|28899755|ref|NP_799360.1| site-specific tyrosine recombinase XerC [Vibrio parahaemolyticus RIMD 2210633] gi|153838746|ref|ZP_01991413.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ3810] gi|260878123|ref|ZP_05890478.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AN-5034] gi|260895820|ref|ZP_05904316.1| tyrosine recombinase XerC [Vibrio parahaemolyticus Peru-466] gi|260900847|ref|ZP_05909242.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ4037] gi|81726659|sp|Q87KJ6|XERC_VIBPA RecName: Full=Tyrosine recombinase xerC gi|28808007|dbj|BAC61244.1| integrase/recombinase XerC [Vibrio parahaemolyticus RIMD 2210633] gi|149747832|gb|EDM58716.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ3810] gi|308087191|gb|EFO36886.1| tyrosine recombinase XerC [Vibrio parahaemolyticus Peru-466] gi|308092778|gb|EFO42473.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AN-5034] gi|308110579|gb|EFO48119.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ4037] Length = 310 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 85/301 (28%), Positives = 152/301 (50%), Gaps = 16/301 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L E+GLS T ++Y +Q L +A + E + ++ Q+ +R K + + Sbjct: 24 LRSEKGLSLHTQRNY----KQQLETMAQHLAE-MGLKDWSQVDAGWVRQLAGKGMREGMK 78 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 SL LS ++SF +L R + + + +K LP+ L+ + N LL Sbjct: 79 ASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEV-----NQLLE 133 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + E + R+ A++ L+YG GLR++E +S+ +++ LR+ GKGDK R VP Sbjct: 134 VN-EDDPLAIRDRAMMELMYGAGLRLAELVSVDVRDVQLRSGELRVIGKGDKERKVPFSG 192 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 + + ++ + DL + LF G ++ Q+ + + + + + H Sbjct: 193 MATEWVGKWLRVR-GDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQKQSVASHISPHK 251 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ ++ + + YDQ HP +K Sbjct: 252 LRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQH----LAQAYDQAHPRARKK 307 Query: 325 D 325 + Sbjct: 308 N 308 >gi|327483029|gb|AEA77436.1| Tyrosine recombinase XerC [Vibrio cholerae LMA3894-4] Length = 267 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 73/266 (27%), Positives = 140/266 (52%), Gaps = 15/266 (5%) Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 QL +R + + + Q + S+ LS ++SFL +L R + + +K + Sbjct: 15 QLDSAWVRQLVMQGKRQGMKASSIATRLSSLRSFLDFLILRGELEANPAKGVSAPRKQRT 74 Query: 125 LPRALNEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 LP+ L+ VD + LL + + + R+ AI+ L+YG GLR++E +S+ +++ Sbjct: 75 LPKNLD-------VDEMAQLLEVTDDDP-LSIRDRAIMELMYGAGLRLAELVSIDVKDVN 126 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242 + +R+ GKG+K R V ++ + ++ L L + + LF G ++ Sbjct: 127 LSEGEIRVIGKGNKERKVWFAGQAQEWVGKWLKLRS-QLADSAETALFVSKLGTRISHRS 185 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 Q+ + + + + + H LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ Sbjct: 186 VQKRMAEWGQKQAVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLD 245 Query: 303 SKNGGDWMMEIYDQTHPSITQKDKKN 328 ++ + ++YDQ HP +K+K + Sbjct: 246 FQH----LAQVYDQAHPRARKKNKDD 267 >gi|253578510|ref|ZP_04855782.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850828|gb|EES78786.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 294 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 84/283 (29%), Positives = 139/283 (49%), Gaps = 16/283 (5%) Query: 38 SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97 SY+ D ++ FL ++ I+ + + E+ +IS +K S+ RS++ +++ Sbjct: 25 SYQRDLKKMAEFL-----KERGIRNYKDVKELELEGYISYMEREKFASSSISRSVASMRA 79 Query: 98 FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157 F +YL K + E N++ K P L ++ L+ L T K I R+S Sbjct: 80 FFQYLWKEGVIAEDPADNLKPPKVEKRAPEILTIEEVDKLLQQPKLDTP---KGI--RDS 134 Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 A+L LLY G+R+SE L L ++ + Q + + K RI+P+ +KA+ Y Sbjct: 135 AMLELLYATGMRVSEMLHLQIFDV-NLQFGYVVCNENGKERIIPIGIPCKKAMERYLQTA 193 Query: 218 -PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 + + LF GK ++ F + ++ G+ HTLRHSFA H+L N Sbjct: 194 RTVFVKDEKETALFTNCSGKAMSRQGFWKVLKGYADDAGIKRDIAPHTLRHSFAVHMLQN 253 Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 G D+RS+Q +LGH +STTQ+Y +N M ++Y +THP Sbjct: 254 GADIRSVQEMLGHSDISTTQVYLGMNMNK----MRDVYMKTHP 292 >gi|296447748|ref|ZP_06889663.1| tyrosine recombinase XerD [Methylosinus trichosporium OB3b] gi|296254725|gb|EFH01837.1| tyrosine recombinase XerD [Methylosinus trichosporium OB3b] Length = 314 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 82/291 (28%), Positives = 134/291 (46%), Gaps = 18/291 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L ERG ++ TL +Y D ++ L E + + T +RA+++ ++ Sbjct: 13 FLDMLAAERGAARNTLDAYRRDLEDYVAHLERTGAEPLGVTT------DGLRAYLATLQS 66 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + + R LS ++ F K+L + + + ++ +S P L + L++ Sbjct: 67 RGMTAATSARRLSALRQFHKFLYVDRYRADDPSTPLEGPRRQHSAPDILAMDEVERLLET 126 Query: 141 VLLHTSHETKWID-----ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 E++ AR A+L LY GLR+SE +SL S ++GKG Sbjct: 127 AREGLEDESRAAGERLRAARLYALLETLYATGLRVSELVSLPASAARSRDSFFTVRGKGS 186 Query: 196 KIRIVPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 K R+ P+ P + A+ + L P + + P G L F R ++ Sbjct: 187 KERLAPMTPRAKAALTVFRALLAKHAPGLADSHFLFP-SDAAEGH-LTRQAFARDLKTAA 244 Query: 252 RYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 GL + H LRH+FA+HLL NG DLR +Q +LGH +STTQIYT+V Sbjct: 245 AAAGLSARDISPHALRHAFASHLLQNGADLRVVQELLGHADISTTQIYTHV 295 >gi|300812249|ref|ZP_07092687.1| tyrosine recombinase XerC [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496763|gb|EFK31847.1| tyrosine recombinase XerC [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|325686014|gb|EGD28073.1| site-specific tyrosine recombinase XerC [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 295 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 82/286 (28%), Positives = 140/286 (48%), Gaps = 12/286 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L+ ER S T+ +Y+ D L + +E Q+S ++ ++ Sbjct: 5 EQFLSYLKNERSYSPKTVLAYQKD----LAAAKKFWQENGGFPGWDQISRRDLEIYLLAT 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 QK+ +L R LS +KSF + L +R + + ++ + LP + + ++ Sbjct: 61 -GQKLASSTLSRKLSSLKSFYRLLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQVI 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 ++ ++ K + RN AI+ L Y G+R+SE L + + + + + GKG+K R Sbjct: 120 RSL-----NDGKPLTVRNRAIVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNKDR 174 Query: 199 IVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 V +K + EY L N +F G+P++ + ++Q+ + GL Sbjct: 175 YVFFDQESKKYLEEYLQAARPSLLKNEPDTGAVFLNKLGRPISSRGIAKAVQQIFQKAGL 234 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 H LRHSFAT +L+NG DLRS+Q +LGH LSTTQIYT+V+ Sbjct: 235 TAGAHPHELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVS 280 >gi|306819226|ref|ZP_07452937.1| possible integrase/recombinase XerD [Mobiluncus mulieris ATCC 35239] gi|307700216|ref|ZP_07637257.1| site-specific tyrosine recombinase XerC [Mobiluncus mulieris FB024-16] gi|304648008|gb|EFM45322.1| possible integrase/recombinase XerD [Mobiluncus mulieris ATCC 35239] gi|307614598|gb|EFN93826.1| site-specific tyrosine recombinase XerC [Mobiluncus mulieris FB024-16] Length = 361 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 90/346 (26%), Positives = 150/346 (43%), Gaps = 58/346 (16%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFL----------AFYTEEKITIQTIRQLSYTE---- 70 L RG S +L++Y D R+ L FL + + R + E Sbjct: 21 LRANRGFSPHSLRAYLGDLRELLEFLCPPVALVPAAGLAAPPRSGESSGRGFAAPELSRA 80 Query: 71 ------IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 IRA++ + +L R ++ ++F + K + + L + + K NS Sbjct: 81 LSDPARIRAWLGDMSRRGASRATLARRVASFRTFSAWALKHGFMSCDSGLRLHSPKPDNS 140 Query: 125 LPRALNEKQALTLVDNVLLHT--------------------------SHETKWIDARNSA 158 LP L+E Q L++ L + + R+ A Sbjct: 141 LPTVLSEAQVARLLNTARLQAYSLGVHQKASKSQAEIPDSIPGDSAVPNRVNPVGLRDWA 200 Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD--- 215 +L LLY G+R+SE L ++I ++T+R+ GKG K R+ P A+ EY + Sbjct: 201 LLELLYATGVRVSELTGLRLRDISRSEATIRVCGKGGKERVAPYGIPAGIALDEYLEQGR 260 Query: 216 --LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 L D + + F G++G L+ + + + ++ G+P H LRH+ ATHL Sbjct: 261 PVLVSPDRDAGEWV--FLGVKGGRLDTRLVRGMLHRMTAVAGVP-DLGPHGLRHTAATHL 317 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 L+ G DLR +Q ILGH L TTQ YT++++ + + ++Y Q HP Sbjct: 318 LNGGADLRCVQEILGHASLGTTQRYTHLSTAH----LRQVYLQAHP 359 >gi|238763615|ref|ZP_04624575.1| Tyrosine recombinase [Yersinia kristensenii ATCC 33638] gi|238698093|gb|EEP90850.1| Tyrosine recombinase [Yersinia kristensenii ATCC 33638] Length = 263 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/264 (26%), Positives = 133/264 (50%), Gaps = 12/264 (4%) Query: 56 EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115 E++ + + L ++R+ +S+ + + SL LS ++SFL +L + + + Sbjct: 5 EQMGLAHWQTLDAAQVRSLVSRSKRAGLHSSSLALRLSALRSFLNWLVSQGVMQVNPAKG 64 Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175 + + LP+ ++ + L+D L + R+ A+L ++YG GLR+SE + Sbjct: 65 VSTPRSGRHLPKNIDVDEVDKLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVG 118 Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235 + +++ + + GKG K R VP+ + K + + +L +L +F G Sbjct: 119 MNCKHVDLASGEVWVMGKGSKERKVPIGKTAVKWLEHWLEL--RELFEPQDDAIFLANTG 176 Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 K ++ Q+ + G+ H LRHSFATH+L + GDLR++Q +LGH L+TT Sbjct: 177 KRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTT 236 Query: 296 QIYTNVNSKNGGDWMMEIYDQTHP 319 QIYT+++ ++ + +YD HP Sbjct: 237 QIYTHLDFQH----LATVYDAAHP 256 >gi|328948447|ref|YP_004365784.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489] gi|328448771|gb|AEB14487.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489] Length = 307 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 91/335 (27%), Positives = 160/335 (47%), Gaps = 43/335 (12%) Query: 6 LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65 +PE + FE +E +L ++ RGLS+ TL SY D F F ++ Sbjct: 1 MPETL-FECSEEFLIYLGSV---RGLSENTLLSYRQDLAHFCEFFG-------NDKSAEG 49 Query: 66 LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 L+ ++R F+ +K S+ R +S ++ YLKK +++ ++ L++ +L Sbjct: 50 LTLEDLRLFVGYLSRRKYSVASINRIISAVRGLFAYLKKFGYISKNVSYELKCLRQPKTL 109 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 PR +++ + +DNV + +R+ AI ++Y G R+SE SL Q+ D Sbjct: 110 PRFMSQVE----IDNVCRQPEKKELLWASRDKAIFEMMYSSGCRVSELASLKFQDFTSDF 165 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDL-----------CPFDLNLNIQLPLFRGIR 234 + + GKG K R V R +++ Y C +++ +F + Sbjct: 166 RSAIVTGKGKKDRRVYFEQDARNSLMLYLKERKARFPQAEKGCAGEVS-----RIFLSQK 220 Query: 235 GKPLNP-GVFQRYIRQLRRYLGLPLS---TTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290 G L+ G++ YI + RY G+ + + H RH+FAT +L++G D+R +Q +LGH Sbjct: 221 GTALSAHGIW--YI--VSRYTGIEGTGSHVSPHAFRHTFATGMLNSGADIRIVQELLGHS 276 Query: 291 RLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325 +STTQ YT+V + + ++Y Q P +KD Sbjct: 277 NISTTQRYTHVTLER----LKKVYSQAFPHSGKKD 307 >gi|322806106|emb|CBZ03673.1| tyrosine recombinase XerD [Clostridium botulinum H04402 065] Length = 263 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/249 (28%), Positives = 132/249 (53%), Gaps = 10/249 (4%) Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 I AF+ + + S+ R++ +++F KYL K+ + +E L K ++P+ L+ Sbjct: 23 IMAFVQYLQREGRATSSIVRNIVSVRNFYKYLIKKNMVSEDPTLGYEIPKIERTIPKILS 82 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 ++ VD +L + K + R+ A+L L+Y G++I+E L+L +I + ++ Sbjct: 83 VEE----VDKLLNSPNSSKKGL--RDKAMLELMYATGVKITELLNLNIYDINLKFNYIKC 136 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 +G + RI+P+ K + Y ++ P N+ LF ++G + F + I+ Sbjct: 137 RGSKKRERIIPIGSYAIKCLKNYLEVRPAINVYNLDY-LFLNLKGTQMTRQGFWKIIKFY 195 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 + + ++TLRHSFA HLL NG D++S+Q +LGH L+ TQIY++++ K+ + Sbjct: 196 AKEASIDKEIDSYTLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSK---I 252 Query: 311 MEIYDQTHP 319 E+Y HP Sbjct: 253 AEVYKNAHP 261 >gi|300024678|ref|YP_003757289.1| tyrosine recombinase XerD [Hyphomicrobium denitrificans ATCC 51888] gi|299526499|gb|ADJ24968.1| tyrosine recombinase XerD [Hyphomicrobium denitrificans ATCC 51888] Length = 309 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 83/290 (28%), Positives = 139/290 (47%), Gaps = 22/290 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L ERG S T+++Y D FL +L+ + +++ T I+ +I+ Sbjct: 14 FLDMLTAERGASPNTIEAYRGDLEGFLDYLSDGSVAPLSVGT------QNIQGYIAAMAN 67 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 S R LS IK + ++L + ++ KK SLP+ L+ + VD Sbjct: 68 AGQAPTSRSRRLSAIKQYYRFLFAEGLIGADPTSGLQGPKKQRSLPKVLS----IAEVDR 123 Query: 141 VLLHTSHETKWIDARN-------SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 +L + + ++ R +L LLY G+R+SE + L + D+ I+GK Sbjct: 124 LLDASQKRCEGVEGRAMFRALRFHCLLELLYATGMRVSELVGLPRTVLRGDKRVFSIKGK 183 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 G + R+VPL R A+ + ++ FD N P + G + F + ++ + Sbjct: 184 GGRERLVPLNAEARAALDRFLEVSGRFD-NSPWLFP-SKSASGH-MTRQRFAQDLKDVAA 240 Query: 253 YLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G+ + H LRH+FA+HLL G DLR++Q +LGH +STT+IYT+V Sbjct: 241 EAGIGGDRISPHVLRHAFASHLLDRGADLRTVQQLLGHADISTTEIYTHV 290 >gi|90422054|ref|YP_530424.1| tyrosine recombinase XerD [Rhodopseudomonas palustris BisB18] gi|90104068|gb|ABD86105.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris BisB18] Length = 320 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 90/300 (30%), Positives = 138/300 (46%), Gaps = 32/300 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L + E+G K TL +Y D FL + T +R ++++ Sbjct: 15 FLDMIAAEQGAGKNTLDAYRGDLTDLSDFLGHARSSFVAADT------EVLRGYLAELDE 68 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + S+ R LS + ++L +I + + K+ LP+ L+ + VD Sbjct: 69 RGYKSTSVARKLSAFRHLFRFLLTERIRADDPAAILSGPKRGRGLPKVLS----IADVDR 124 Query: 141 VLLHTSH---------ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 +L H + + AR +L +LY GLR+SE +SL D + ++ Sbjct: 125 LLQHAKDLIAAPHANTQQRLRAARLYCLLEVLYATGLRVSELVSLPLSAARRDARMIVVR 184 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFD-------LNLNIQLPLFR--GIRGKPLNPGV 242 GKG+K R+VPL S ++A+ Y L D N + LF G G L Sbjct: 185 GKGNKERLVPLNESSKQAMAGY--LAALDELRQEKAKNASASKWLFPSFGESGH-LTRQH 241 Query: 243 FQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 F R ++ L GL P + H LRH+FA+HLL NG DLR +Q++LGH +STTQIYT+V Sbjct: 242 FARELKDLAGAAGLSPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHV 301 >gi|315125203|ref|YP_004067206.1| site-specific recombinase [Pseudoalteromonas sp. SM9913] gi|315013716|gb|ADT67054.1| site-specific recombinase [Pseudoalteromonas sp. SM9913] Length = 314 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 84/310 (27%), Positives = 152/310 (49%), Gaps = 43/310 (13%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFY----TEEKITIQTIRQLSYTEIRAFISKRRT 80 L+ ER S T+ Y L F A Y + +Q+ IR + R Sbjct: 26 LKFERQYSAHTVNQYVSQ----LGFAALYFNKLCDNWFAVQS------EHIRRYSMALRA 75 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLKKSNSLPRALNEKQALT 136 +++ R++ LS I+S K+LK + IT + + N ++ K + LP+ L+ Q Sbjct: 76 KQLSGRTISLKLSCIRSLYKFLKAKNITEQPHYHNPAQGIKGPKFAKPLPKNLDVDQMAR 135 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L++ + + R+ A++ L+Y GLRISE + Q+I + ++GKG K Sbjct: 136 LLEIP------DDDPLAIRDKAMMELMYSSGLRISELVGANMQDINARNGEILVRGKGAK 189 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-- 254 R++P+ +A+ ++ + P + + + +F + ++ +RQ+R + Sbjct: 190 ERLIPVGSKALEALKKWLAVRPLFMGAD-EHAVFLSSKKNRIS-------VRQVRLRMQE 241 Query: 255 -----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 G+ H LRHSFA+H+L + GDLR++Q +LGH LS TQ+YT+++ ++ Sbjct: 242 WGIKQGISSQVHPHKLRHSFASHILESSGDLRAVQELLGHSSLSATQVYTHLDFQH---- 297 Query: 310 MMEIYDQTHP 319 + ++YD THP Sbjct: 298 LAKVYDNTHP 307 >gi|225023845|ref|ZP_03713037.1| hypothetical protein EIKCOROL_00711 [Eikenella corrodens ATCC 23834] gi|224943319|gb|EEG24528.1| hypothetical protein EIKCOROL_00711 [Eikenella corrodens ATCC 23834] Length = 307 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 90/313 (28%), Positives = 146/313 (46%), Gaps = 34/313 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + WL +L+ ++ S TL +Y D L +LA + Q +L+ A + + Sbjct: 10 EAWLHSLQ-QQNHSPHTLAAYRRD----LTWLADF-------QPQSKLARPLFTAALRQL 57 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q RS+ R LS + F ++L + ++ K LP+A+ + L+ Sbjct: 58 GQQNQHPRSIARRLSAWRQFCRWLVQTGYLKADPTHGLKAPKAPERLPKAVPAEPLNQLL 117 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + +D+R+ AI LLYG GLR++EA +L ++ + + GKG K R Sbjct: 118 DQAPENP------LDSRDLAIFELLYGSGLRLAEACALDLDDLNLQSGWIAVTGKGRKQR 171 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYL 254 +PL +A+ Y L P LF G G+ L Q+ ++Q + Sbjct: 172 HLPLTAQSIRALAGY-------LKTRTAAPDETALFTGRTGRRLGARQIQKRLQQFATHH 224 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G + H LRHS+A+HLL N D+R++Q +LGH +L+TTQ YT ++ D + IY Sbjct: 225 G-SRHLSPHMLRHSYASHLLQNARDIRAVQELLGHSQLATTQHYTKLDF----DHLARIY 279 Query: 315 DQTHPSITQKDKK 327 D HP ++ K Sbjct: 280 DDAHPRAKRRQGK 292 >gi|163759949|ref|ZP_02167033.1| tyrosine recombinase [Hoeflea phototrophica DFL-43] gi|162282907|gb|EDQ33194.1| tyrosine recombinase [Hoeflea phototrophica DFL-43] Length = 313 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 91/323 (28%), Positives = 150/323 (46%), Gaps = 32/323 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ + ERG + TL++Y D + K T+ + + IR IS Sbjct: 10 EAFLEMMSAERGAALNTLEAYRRDLDDASSVV------KALGSTLDRANADTIRTVISDL 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S R LS ++ F K+L + + + + +K SLP+ L+ V Sbjct: 64 AARGFSPASQARRLSALRQFYKFLHAEGLRDDDPTGVVESPRKRRSLPKILS-------V 116 Query: 139 DNV-LLHTSHETKWIDARNS----------AILYLLYGCGLRISEALSLTPQNIMDDQST 187 D+V L E AR+ A+L LLY G+R+SE + L + + +D Sbjct: 117 DDVSRLLAQAEADISKARDESETTQRIRFRALLELLYATGMRVSELVGLPYRVLAEDGRF 176 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 L I+GKG K R+VP+ R A+ + ++ P L+ VF R Sbjct: 177 LIIRGKGAKERMVPMSRPARLALEAWMAEIGEVAEETGFLFPA--NSSDGHLSRQVFARE 234 Query: 247 IRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 ++ + GLP + + H LRH+FA+HLL+ G DLR++Q +LGH +STTQIYT+V + Sbjct: 235 LKDVAARAGLPSAKVSPHVLRHAFASHLLAGGADLRAVQKLLGHTDISTTQIYTHVLDER 294 Query: 306 GGDWMMEIYDQTHPSITQKDKKN 328 + ++ + HP Q ++ Sbjct: 295 ----LKQLVSEHHPLAKQPKNRD 313 >gi|227875947|ref|ZP_03994070.1| possible integrase/recombinase XerD [Mobiluncus mulieris ATCC 35243] gi|227843479|gb|EEJ53665.1| possible integrase/recombinase XerD [Mobiluncus mulieris ATCC 35243] Length = 361 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 90/346 (26%), Positives = 150/346 (43%), Gaps = 58/346 (16%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFL----------AFYTEEKITIQTIRQLSYTE---- 70 L RG S +L++Y D R+ L FL + + R + E Sbjct: 21 LRANRGFSPHSLRAYLGDLRELLEFLCPPVALVPAAGLAAPPRSGESSGRGFAAPELSRA 80 Query: 71 ------IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 IRA++ + +L R ++ ++F + K + + L + + K NS Sbjct: 81 LSDPARIRAWLGDMSRRGASRATLARRVASFRTFSAWALKHGFMSCDSGLRLHSPKPDNS 140 Query: 125 LPRALNEKQALTLVDNVLLHT--------------------------SHETKWIDARNSA 158 LP L+E Q L++ L + + R+ A Sbjct: 141 LPTVLSEAQVARLLNTARLQAYSLGVHQKASKSQAEIPDSIPGDSAVPNRVNPVGLRDWA 200 Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD--- 215 +L LLY G+R+SE L ++I ++T+R+ GKG K R+ P A+ EY + Sbjct: 201 LLELLYATGVRVSELTGLRLRDISRSEATIRVCGKGGKERVAPYGIPAGIALDEYLEQGR 260 Query: 216 --LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 L D + + F G++G L+ + + + ++ G+P H LRH+ ATHL Sbjct: 261 PVLVSPDRDAGEWV--FLGVKGGRLDTRLVRGMLHRMTAVAGVP-DLGPHGLRHTAATHL 317 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 L+ G DLR +Q ILGH L TTQ YT++++ + + ++Y Q HP Sbjct: 318 LNGGADLRCVQEILGHASLGTTQRYTHLSTTH----LRQVYLQAHP 359 >gi|119384024|ref|YP_915080.1| phage integrase family protein [Paracoccus denitrificans PD1222] gi|119373791|gb|ABL69384.1| phage integrase family protein [Paracoccus denitrificans PD1222] Length = 323 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 83/284 (29%), Positives = 130/284 (45%), Gaps = 31/284 (10%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 TL +Y D R F+ +LA E +T+ + ++S Q + + R LS Sbjct: 29 TLLAYGRDLRDFVDWLAARDETLLTV------PREGVEDYLSHCDAQGLSRATRARRLSA 82 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 I+ ++ + + ++ LP+ L+ + ++D + +ET+ A Sbjct: 83 IRQLTRFALDEGWREDDPAGRISGPGRAQRLPKVLDRAEVQAMLDALPRIGRNETE--RA 140 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI---L 211 RN ++ L+Y G+R+SE +SL D + L I+GKG K R+VPL R+A+ L Sbjct: 141 RNLVLVELVYATGMRVSELVSLPVGACRGDPALLLIRGKGGKERMVPLSDPARRALAAWL 200 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGK--------PLNPGVFQRYIRQLRRYLGL------P 257 + D P + PL R + GK P G R P Sbjct: 201 KRRDDAP------AESPLGRLVAGKGARWLFPAPSREGHMTRQAMNALLGQLALAAGIDP 254 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + H +RH+FATHLL G DLR+IQ++LGH L TT+IYT+V Sbjct: 255 ARVSPHVIRHAFATHLLEGGADLRAIQTLLGHADLGTTEIYTHV 298 >gi|298373800|ref|ZP_06983789.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058] gi|298274852|gb|EFI16404.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058] Length = 307 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 88/293 (30%), Positives = 145/293 (49%), Gaps = 25/293 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 N+ L +E+ +S+ T+ +Y D +L + I I RQ + T ++ I + Sbjct: 11 NYRVFLTMEKSMSENTVVAYIRDLHTLSEYL-----DGIGID-YRQATLTNLKNLIVELT 64 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 I RS R +SGIKSF ++ ++ + + LP L+ ++ ++ Sbjct: 65 DLGISGRSRARMISGIKSFYRFCIIDRLLEADPTEQLEQPQLPLYLPDVLSVEEIDRII- 123 Query: 140 NVLLHTSHETKW----IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 V + S K+ I RN AI+ +LYG G+R+SE + +I D+ ++I GKG+ Sbjct: 124 -VTIDLSEVDKYTKLNIGHRNLAIVEVLYGSGVRVSELVYAKISDINFDEKFIKILGKGN 182 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-------LFRGIRGKPLNPGVFQRYIR 248 K R+VPL +AI ++ L + P +F RG + + I+ Sbjct: 183 KERLVPLSDPAIRAINNWF------LARRVLTPKPKHEDYIFLNRRGARMTRQMVFLAIK 236 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + G+ + + HT RHSFATHLL NG +LR+IQ +LGH ++TT+IYT+V Sbjct: 237 NMVEKAGITKTVSPHTFRHSFATHLLENGANLRAIQQLLGHASITTTEIYTHV 289 >gi|91227527|ref|ZP_01261864.1| tyrosine recombinase [Vibrio alginolyticus 12G01] gi|91188551|gb|EAS74843.1| tyrosine recombinase [Vibrio alginolyticus 12G01] Length = 310 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 82/301 (27%), Positives = 151/301 (50%), Gaps = 16/301 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L E+GLS T ++Y +Q L +A + E + ++ Q+ +R K + + Sbjct: 24 LRSEKGLSLHTQRNY----KQQLETMAQHLAE-MGLKDWSQVDAGWVRQLAGKGMREGMK 78 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 SL LS ++SF +L R + + + +K LP+ L+ + L++ Sbjct: 79 ASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVSQLLE----- 133 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 +E + R+ A++ L+YG GLR++E + + +++ LR+ GKGDK R VP Sbjct: 134 -VNEDDPLAVRDRAMMELMYGAGLRLAELVGVDVRDVQLRSGELRVIGKGDKERKVPFSG 192 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 + + ++ + DL + LF G ++ Q+ + + + + + H Sbjct: 193 MATEWVGKWLRVR-GDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQKQSVASHISPHK 251 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ ++ + + YDQ HP +K Sbjct: 252 LRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQH----LAQAYDQAHPRARKK 307 Query: 325 D 325 + Sbjct: 308 N 308 >gi|300690586|ref|YP_003751581.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07] gi|299077646|emb|CBJ50282.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07] Length = 308 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 92/319 (28%), Positives = 150/319 (47%), Gaps = 24/319 (7%) Query: 7 PEIVSFELLKER--QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64 PE+++ L Q + L +E GL++ TL +Y D L A + E+ + I Sbjct: 6 PEVLAPARLSAETIQRFCDALWLEDGLARNTLDAYRRD----LTLYAQWLAERG--KAID 59 Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 Q ++ + + R + S R + K F ++ + + + + K+ Sbjct: 60 QTEDGDLADYFAARHAESRAS-SANRRRTVFKRFFQWALREHVISADPSRLLSTAKQPPR 118 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 +P+ L+E Q L+ + T + R+ A++ L+Y GLR+SE ++L + + Sbjct: 119 IPKTLSEAQVEALIAAPDIDTP-----LGLRDRAMIELMYASGLRVSEIVALKTVEVGLN 173 Query: 185 QSTLRI-QGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGV 242 + +R+ GKG K R+VP + Y D L LF RG + Sbjct: 174 EGVVRVVSGKGGKDRLVPFGAEAGDWLRRYLRDGRTALLGERTADALFVTARGDGMTRQA 233 Query: 243 FQRYIRQ--LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 F I++ LR L PLS HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT+ Sbjct: 234 FWHLIKRYALRADLHAPLSP--HTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTH 291 Query: 301 VNSKNGGDWMMEIYDQTHP 319 V + + ++ Q HP Sbjct: 292 VARER----LRTLHAQHHP 306 >gi|225573518|ref|ZP_03782273.1| hypothetical protein RUMHYD_01711 [Blautia hydrogenotrophica DSM 10507] gi|225039115|gb|EEG49361.1| hypothetical protein RUMHYD_01711 [Blautia hydrogenotrophica DSM 10507] Length = 294 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 78/284 (27%), Positives = 142/284 (50%), Gaps = 18/284 (6%) Query: 38 SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97 SYE D + +L E+ + +++ T++ ++S R K ++ RS++ I++ Sbjct: 25 SYERDLNKMAAYL-----ERQGVYNPLKVTETDLNGYLSYLRRNKFAASTISRSVASIRA 79 Query: 98 FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157 F ++L + + N++ K P L ++ VD +L S +T R+ Sbjct: 80 FYQFLFRAHQIVQDPSENLKPPKVEKKTPEILTVEE----VDLLLRQPSLDTAK-GLRDK 134 Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 A+L LLY G+R+SE + L ++ + + +G + R++P ++A+++Y + Sbjct: 135 AMLELLYATGMRVSELMHLKVSDVNLNLGYVDC-SEGARERVIPFGNVCKRALVQYLEQG 193 Query: 218 --PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275 F + LF GK ++ F + ++ G+ T HTLRHSFA H+L Sbjct: 194 REAFQRKGETDI-LFPNCSGKMMSRQGFWKVLKGYASAAGITTDITPHTLRHSFAAHMLQ 252 Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 NG D++S+Q +LGH +STTQ+Y N+N + M ++Y Q HP Sbjct: 253 NGADIKSLQEMLGHSDISTTQMYLNLNM----NRMRDVYMQAHP 292 >gi|156972655|ref|YP_001443562.1| site-specific tyrosine recombinase XerC [Vibrio harveyi ATCC BAA-1116] gi|166918907|sp|A7N0V8|XERC_VIBHB RecName: Full=Tyrosine recombinase xerC gi|156524249|gb|ABU69335.1| hypothetical protein VIBHAR_00307 [Vibrio harveyi ATCC BAA-1116] Length = 313 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 84/301 (27%), Positives = 151/301 (50%), Gaps = 16/301 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L E+GLS T ++Y +Q L +A + E + ++ Q+ +R K + + Sbjct: 24 LRSEKGLSLHTQRNY----KQQLETMAHHLAE-MGLKDWSQVDAGWVRQLAGKGMREGMK 78 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 SL LS ++SF +L R + + +K LP+ L+ + N LL Sbjct: 79 ASSLATRLSSLRSFFDFLILRGEMLANPAKGVSAPRKKRPLPKNLDVDEV-----NQLLE 133 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + E + R+ A++ L+YG GLR++E +S+ +++ LR+ GKGDK R VP Sbjct: 134 VN-EDDPLAVRDRAMMELMYGAGLRLAELVSVDVRDVQLRSGELRVIGKGDKERKVPFSG 192 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 + + ++ + DL + LF G ++ Q+ + + + + + H Sbjct: 193 MATEWVGKWLRVR-GDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQKQSVASHISPHK 251 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ ++ + + YDQ HP ++ Sbjct: 252 LRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQH----LAQAYDQAHPRARKR 307 Query: 325 D 325 + Sbjct: 308 N 308 >gi|317494831|ref|ZP_07953242.1| tyrosine recombinase XerC [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917156|gb|EFV38504.1| tyrosine recombinase XerC [Enterobacteriaceae bacterium 9_2_54FAA] Length = 303 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 83/304 (27%), Positives = 151/304 (49%), Gaps = 23/304 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ L +ER LS T++SY Q + + + ++ RQL ++R ++ Sbjct: 13 EAFLRFLRVERQLSPHTIESYH---HQLMAIIEIVSAS--GLRDWRQLDSNQVRMITARS 67 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + S+ LS ++SFL + + + + + + K++ LP+ L+ V Sbjct: 68 KRMGLEAASIALRLSSLRSFLDWQVSQGVMSVNPAKGISAPKQARHLPKNLD-------V 120 Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 D+V LL + R+ +L ++YG GLR+SE + L +++ + + GKG K Sbjct: 121 DDVNRLLEIDSSDP-LAVRDRTMLEVMYGAGLRLSELVGLDCRHMNMASGEVWVLGKGSK 179 Query: 197 IRIVPLLPSVRKAILEYYDLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 R +P+ R AI P ++ + +F GK ++ Q+ + G Sbjct: 180 ERKLPI---GRTAIHWLEQWLPLREIYDPVDDAVFVSKLGKRISVRSVQKRFAEWGVKQG 236 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H LRHSFATH+L + GDLR++Q +LGH L+TTQIYT+++ ++ + ++YD Sbjct: 237 VTSHINPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----LAKVYD 292 Query: 316 QTHP 319 HP Sbjct: 293 AAHP 296 >gi|161610765|ref|YP_067311.2| site-specific tyrosine recombinase XerD [Rickettsia typhi str. Wilmington] Length = 306 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 92/298 (30%), Positives = 153/298 (51%), Gaps = 24/298 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ L ER LSK ++ SY+ R L F + T++KI+ I + IR +I Sbjct: 5 EQFLEMLLAERALSKNSILSYK---RDLLDFHNYLTKQKISELNI---TTRNIRKWIEYL 58 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + RS+ R +S IKS+ +L T + +LN+ K N LP L+ Q + Sbjct: 59 ASNNLHARSINRKISTIKSYYTFLISENHTAFNPVLNVDLPKYQNKLPVILSIDQ----I 114 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-------LRIQ 191 +L + S + R +A+++LLY GLR+SE +SL +I+ + ++ + Sbjct: 115 KLILEYCSKDHTPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNNTSKGIVRKIFSVL 174 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-----IQLPLFRGIRGKPLNPGVFQRY 246 GKG+K R++ + +I +Y + +N I L + G + F Sbjct: 175 GKGNKERVIVINDQAVLSITKYLKIRDIFVNKAKSKNLIYLFPSSAVAGY-MTRQNFAIL 233 Query: 247 IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 ++ + +GL P + + H LRHSFA+HLL G DLR IQ +LGH +STTQIYT++++ Sbjct: 234 LKSVALDIGLNPKNVSPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLHT 291 >gi|262404865|ref|ZP_06081419.1| tyrosine recombinase XerC [Vibrio sp. RC586] gi|262348949|gb|EEY98088.1| tyrosine recombinase XerC [Vibrio sp. RC586] Length = 310 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 79/302 (26%), Positives = 151/302 (50%), Gaps = 16/302 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L E+GLS T ++Y+ +LA ++ + + QL +R + + Q + Sbjct: 24 LHSEKGLSLYTQRNYKQQLETMARYLA-----QVGLTSWPQLDAAWVRQLVVLGKRQGMK 78 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S+ LS ++SFL +L R + + +K LP+ L+ + L++ Sbjct: 79 ASSISTRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRPLPKNLDVDEMAQLLEVT--- 135 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + + R+ AI+ L+YG GLR++E +S+ +++ +R+ GKG+K R V Sbjct: 136 ---DDDPLSIRDRAIMELMYGSGLRLAELVSIDVKDVNLRDGEIRVIGKGNKERKVWFAG 192 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 ++ + + L N + + LF G ++ Q+ + + + + + H Sbjct: 193 QAQEWVGNWLKLRSQLANSD-ETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISPHK 251 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ ++ + ++YDQ HP +K Sbjct: 252 LRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQH----LAQVYDQAHPRARKK 307 Query: 325 DK 326 +K Sbjct: 308 NK 309 >gi|296171500|ref|ZP_06852764.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894062|gb|EFG73823.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 298 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 86/304 (28%), Positives = 135/304 (44%), Gaps = 28/304 (9%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L ++ G S T ++Y D R L FLA + LS +R+++S Sbjct: 12 LALQCGRSAHTRRAYLGDLRSLLTFLADRGA------GLDGLSLPLLRSWLSAGAAAGAA 65 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 +L R S +K+F + +R + ++ K +LP L + QAL + Sbjct: 66 RTTLARRTSAVKAFTAWAARRGLLAADPGARLQVPKAHRTLPAVLRQDQALDAM-AAAKS 124 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + + + R+ I+ +LY G+R+SE L ++ +R+ GKG+K R VP Sbjct: 125 GAQQGDPMALRDRLIVEMLYATGIRVSELCGLDVDDVDTGHRLVRVLGKGNKQRTVPFGM 184 Query: 205 SVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL--------G 255 A+ + D P + L G RG+ L+ +RQ R + G Sbjct: 185 PAADALRAWLDDGRPALVTAESGPALLLGARGRRLD-------VRQARTVVHQTVSAVDG 237 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 P H LRHS ATHLL G DLR +Q +LGH L+TTQ+YT+V + +++ Sbjct: 238 AP-DMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSR----LRAVHE 292 Query: 316 QTHP 319 Q HP Sbjct: 293 QAHP 296 >gi|251787836|ref|YP_003002557.1| site-specific tyrosine recombinase XerC [Dickeya zeae Ech1591] gi|247536457|gb|ACT05078.1| tyrosine recombinase XerC [Dickeya zeae Ech1591] Length = 302 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 86/307 (28%), Positives = 146/307 (47%), Gaps = 29/307 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ L +ER LS LT +SY Q + + + I + L +RA +++ Sbjct: 12 EAFLRYLRVERQLSPLTQRSY---AHQLQVIIEMLSSSGIA--EWQALDAAGVRAVVARS 66 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + SL + LS ++S L +L R + + K LP+ ++ + L+ Sbjct: 67 KRDGLNAASLAQRLSALRSLLDWLVGRGELKANPARGVPAPKAGRHLPKNMDVDEMNRLL 126 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + L + R+ A+L ++YG GLR++E + L +I + + + GKG K R Sbjct: 127 EIDL------NDPLAVRDRAMLEVMYGAGLRLAELVGLDCGHINLESGEVWVMGKGSKER 180 Query: 199 IVPLLPSVRK------AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 +P+ + AI E Y P D +F GK ++ Q+ + Sbjct: 181 RLPVGATAVTWLTHWLAIREIY--APEDD------AVFISSLGKRISMRNVQKRFAEWGV 232 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 G+ H LRHSFATH+L + GDLR++Q +LGH LSTTQIYT+++ ++ + Sbjct: 233 KQGVNSHVNPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQH----LAS 288 Query: 313 IYDQTHP 319 +YD HP Sbjct: 289 VYDAAHP 295 >gi|170698617|ref|ZP_02889685.1| tyrosine recombinase XerD [Burkholderia ambifaria IOP40-10] gi|170136470|gb|EDT04730.1| tyrosine recombinase XerD [Burkholderia ambifaria IOP40-10] Length = 320 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 83/279 (29%), Positives = 132/279 (47%), Gaps = 15/279 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E GL++ TL +Y D F +LA + + + +I+ R K Sbjct: 39 LWLEHGLARNTLDAYRRDLVLFSQWLAATHDAPLD-----SADEAMLIGYIAARSDGKA- 92 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S R LS + + + + + L + + K++ P L+E Q L+ + Sbjct: 93 -TSSNRRLSVFRRYYGWAVREHRASADPTLRITSAKQAARFPSTLSEAQVEALLGAPDIG 151 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 T + R+ +L L+Y GLR+SE ++L + ++ +R+ GKG K R+VP Sbjct: 152 TP-----LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPF-G 205 Query: 205 SVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 V +E Y D P L LF RG + F I++ + + + Sbjct: 206 EVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQAAVRAHLSP 265 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V Sbjct: 266 HTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 304 >gi|258654185|ref|YP_003203341.1| tyrosine recombinase XerD [Nakamurella multipartita DSM 44233] gi|258557410|gb|ACV80352.1| tyrosine recombinase XerD [Nakamurella multipartita DSM 44233] Length = 353 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 98/345 (28%), Positives = 150/345 (43%), Gaps = 47/345 (13%) Query: 11 SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70 S EL+ + +L +L +ERG+++ T+ SY D ++L FLA ++ ++ + Sbjct: 17 SPELVAALRGYLDHLVVERGVARNTVLSYRRDLNRYLQFLAAAGRTRVA-----DVTAAD 71 Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIK-----SFLKYLKKRKITTESNILNMRNLKKSNSL 125 + F+ RT G L S + + ++L ++ + L Sbjct: 72 VSDFLVCLRTGADGRPPLAASSAARAVVAARGWHRFLLNEGTAEADPSRDVHPPTPARRL 131 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT-------- 177 P+AL + L+D + + R+ A+L LLY G RISE + L Sbjct: 132 PKALPVEAIGRLLDAAGSADPDGPRGL--RDRALLELLYATGARISEVVGLDVDDIDLGP 189 Query: 178 ----------PQNIMDDQ------STLRIQGKGDKIRIVPLLPSVRKAILEYYD------ 215 P + D Q S +R+ GKG K R+VP+ +A+ Y Sbjct: 190 GRLAGRSSTDPTDPTDPQVAPPITSVVRLHGKGAKERLVPVGSFALRALEAYLVRGRPVL 249 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLL 274 + LF IRG L+ + + R GLP S + HTLRHSFATHLL Sbjct: 250 AAAGRGAGPARGALFLNIRGGRLSRQSAWQVLADAARRAGLPASGVSPHTLRHSFATHLL 309 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 G D+RS+Q +LGH ++TTQIYT V D + E+Y HP Sbjct: 310 EGGADVRSVQELLGHASVTTTQIYTLVTV----DALREVYVTAHP 350 >gi|153002474|ref|YP_001368155.1| tyrosine recombinase XerC [Shewanella baltica OS185] gi|151367092|gb|ABS10092.1| tyrosine recombinase XerC [Shewanella baltica OS185] Length = 306 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 87/308 (28%), Positives = 151/308 (49%), Gaps = 33/308 (10%) Query: 21 WLQNLE----IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 WLQ E ER LS T+++Y + + L + + + + + + ++ +S Sbjct: 15 WLQTFERYLSTERQLSAHTVRNYLYELNRGSDLLP----DGVHLLNVSREHWQQV---LS 67 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 K + + RSL LS +K + ++L + + + + K++ LP+ ++ Sbjct: 68 KLHRKGLSPRSLSLCLSAVKQWGEFLLREGVIELNPAKGLSAPKQAKPLPKNIDVDAISH 127 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L+D T + R+ A++ L Y GLR++E +L ++ D +R+ GKG+K Sbjct: 128 LLD------IEGTDPLSLRDKAMMELFYSSGLRLAELAALNLSSVQYDLKEVRVLGKGNK 181 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLR 251 RIVP+ R AI + LN Q+P LF +GK L+ Q + + Sbjct: 182 ERIVPV---GRLAIAALQNW----LNCRKQIPCEDNALFVTEKGKRLSHRSIQARMAKWG 234 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 + L + H LRHSFATH+L DLR++Q +LGH L+TTQIYT+++ ++ + Sbjct: 235 QEQALSVRVHPHKLRHSFATHMLEASADLRAVQELLGHANLATTQIYTSLDFQH----LA 290 Query: 312 EIYDQTHP 319 ++YD HP Sbjct: 291 KVYDNAHP 298 >gi|134101746|ref|YP_001107407.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] gi|291003082|ref|ZP_06561055.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] gi|133914369|emb|CAM04482.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] Length = 313 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 84/310 (27%), Positives = 142/310 (45%), Gaps = 25/310 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +L +L +ERG ++ TL SY D R++ L + ++ + ++ T + AF+++ Sbjct: 16 SGYLNHLAVERGTARSTLDSYARDLRRYADHLL-----ESGVRALGEVRSTHLSAFLAEL 70 Query: 79 RT-----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 R + S R+L + ++ I + LP+AL Sbjct: 71 REGGPERPALAQSSAARALIAARGLHRFAHADGIVEVDVAREISPPSPPKRLPKALPVSD 130 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L L+DN + + + R+ A+L LLY G RISEA+ L ++ + + T+ + GK Sbjct: 131 VLRLLDNT---GGEDVRGL--RDRALLELLYSSGARISEAVGLDVDDVDEAERTILLDGK 185 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLR 251 G + R+VP+ A+ Y L + +F RG L+ ++ Sbjct: 186 GGRQRLVPVGRPALAALGAYMVRARPVLAGRGRGSSAVFLNSRGTRLSRQSAWNALKSAA 245 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT--NVNSKNGGDW 309 G+ + H LRHSFATHLL G D+R +Q +LGH ++TTQ+YT VN+ Sbjct: 246 ERAGIGSGVSPHVLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLITVNT------ 299 Query: 310 MMEIYDQTHP 319 + E++ HP Sbjct: 300 LREVHATAHP 309 >gi|258625073|ref|ZP_05719992.1| tyrosine recombinase XerC [Vibrio mimicus VM603] gi|258582624|gb|EEW07454.1| tyrosine recombinase XerC [Vibrio mimicus VM603] Length = 310 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 79/302 (26%), Positives = 152/302 (50%), Gaps = 16/302 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L E+GLS T ++Y+ +LA ++ + + QL +R + + Q + Sbjct: 24 LHSEKGLSLYTQRNYKQQLETMARYLA-----QMGLTSWPQLDAAWVRQLVVLGKRQGMK 78 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S+ LS ++SFL +L R + + +K LP+ L+ + L++ Sbjct: 79 ASSISTRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRPLPKNLDVDEMAQLLEVT--- 135 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + + R+ AI+ L+YG GLR++E +S+ +++ +R+ GKG+K R V Sbjct: 136 ---DDDPLSIRDRAIMELMYGSGLRLAELVSIDVKDVNLRDGEIRVIGKGNKERKVWFAG 192 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 ++ + ++ L N + + LF G ++ Q+ + + + + + H Sbjct: 193 QAQEWVGKWLKLRSQLANSD-ETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISPHK 251 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ ++ + ++YDQ HP +K Sbjct: 252 LRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQH----LAQVYDQAHPRARKK 307 Query: 325 DK 326 +K Sbjct: 308 NK 309 >gi|88608752|ref|YP_506043.1| tyrosine recombinase XerD [Neorickettsia sennetsu str. Miyayama] gi|88600921|gb|ABD46389.1| tyrosine recombinase XerD [Neorickettsia sennetsu str. Miyayama] Length = 305 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 89/294 (30%), Positives = 152/294 (51%), Gaps = 32/294 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ + +ER + T+ SY D R FL + ++ S + +I+ Sbjct: 10 EQFLEKILVERNATLNTISSYRTDLRLLSTFLK--------KRGLKDASKENLYEYIANL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R Q++ + +++R ++ + F +L KI++ + ++ KK+ LPR L +++ +L+ Sbjct: 62 RAQQLSNATIRRKIATFRQFFSFLYSEKISSTNPAQSLELPKKTLVLPRYLTKEEVFSLL 121 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGD 195 L R AIL +LY G+R+SE +++ +I ++ Q + I GKG Sbjct: 122 --TFLEAGQPATL---RLYAILEILYSSGMRVSELINMKVSDIRPLLNGQQHIIIVGKGR 176 Query: 196 KIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 K RI+P +KAI L+ Y L + N LF G G+ P QR + QL + Sbjct: 177 KERILPF---SKKAIQVLKLY-LTSYQSNSPW---LFPGA-GRKDRPMSRQR-LGQLLKE 227 Query: 254 LGL-----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 L L P + H +RHSFATHLL NG D++ +Q +LGH +++TTQIYT+++ Sbjct: 228 LALKCKIDPKRISPHVIRHSFATHLLDNGMDIKVVQDLLGHAQITTTQIYTHIS 281 >gi|167854818|ref|ZP_02477596.1| site-specific tyrosine recombinase XerC [Haemophilus parasuis 29755] gi|167854116|gb|EDS25352.1| site-specific tyrosine recombinase XerC [Haemophilus parasuis 29755] Length = 261 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 79/265 (29%), Positives = 137/265 (51%), Gaps = 14/265 (5%) Query: 56 EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115 ++ I ++L + +R +S+ Q + +S+ L ++ FL +L K+ + L Sbjct: 3 QQAEITCWQELDASTVRWILSQSHKQGLSAKSIGLRLVALRQFLAFLVKQGELKVNPTLG 62 Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175 +++ K + LP+ ++ +Q + +L S+E +D R+ A++ L+Y GLR+SE Sbjct: 63 IKSPKANKHLPKNIDAEQ----IGQLLNIDSNEP--LDLRDVAMMELMYSSGLRLSELQG 116 Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIR 234 L ++ +R+ GKG+K RIVP+ AI ++ + F N +F R Sbjct: 117 LDLGDMDLPNREVRLLGKGNKERIVPIGSKALDAIEQWLAVRGQFHPKDN---AVFLNQR 173 Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 G L+ Q +++ + L H LRHSFATH+L DLR++Q +LGH LST Sbjct: 174 GGRLSHRSIQLAMKKWGQKQALDTHLHPHKLRHSFATHMLEASQDLRAVQELLGHSSLST 233 Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHP 319 TQIYT+++ + ++ IYD HP Sbjct: 234 TQIYTHLDFQ----YLARIYDLAHP 254 >gi|254451180|ref|ZP_05064617.1| tyrosine recombinase XerD [Octadecabacter antarcticus 238] gi|198265586|gb|EDY89856.1| tyrosine recombinase XerD [Octadecabacter antarcticus 238] Length = 313 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 78/232 (33%), Positives = 115/232 (49%), Gaps = 17/232 (7%) Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q + + R LS IK ++ + ++ + + + LP+ L+ + Sbjct: 66 AQGLAKATRARRLSAIKQLFRFAFEEGWRVDNPAIQISGPGRDKRLPKTLSHSEV----- 120 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + LL+ + + K R + ++ LLY G+R++E +SL D L ++GKGDK R+ Sbjct: 121 DALLNAARDAKKDPLRTTCLMELLYATGMRVTELVSLPVSAARGDPRMLLVRGKGDKERM 180 Query: 200 VPLLPSVRKAI---LEYYDLCPFDLNLNIQLP----LF--RGIRGKPLNPGVFQRYIRQL 250 VPL P R A L+ D D P LF RG G L F I+ L Sbjct: 181 VPLSPPARAATAVWLKTRDKAE-DATFKDGTPRSKFLFPSRGKLGH-LTRQSFFNLIKDL 238 Query: 251 RRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G+ S T HTLRH+FATHLL G DLRSIQ++LGH ++TT+IYT+V Sbjct: 239 ATAGGVTRSKVTPHTLRHAFATHLLEGGADLRSIQTLLGHVDVATTEIYTHV 290 >gi|172040496|ref|YP_001800210.1| integrase/recombinase [Corynebacterium urealyticum DSM 7109] gi|171851800|emb|CAQ04776.1| integrase/recombinase [Corynebacterium urealyticum DSM 7109] Length = 352 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 81/258 (31%), Positives = 122/258 (47%), Gaps = 31/258 (12%) Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV------ 141 L R S +K F K+L +R++ + + +R K +LPR L QA TL+D + Sbjct: 96 LSRLASSMKGFGKFLAQREVLPANPVSALRLPKGEKTLPRVLRSDQARTLLDGLKRDALE 155 Query: 142 --LLHTSHETKWIDA----------------RNSAILYLLYGCGLRISEALSLTPQNIMD 183 H E A R+ I LL+G G+R+ EA ++ ++ Sbjct: 156 PPAPHEGSEDAPATAQPTGNKNQRHATARRVRDWFIAELLFGTGIRVGEAEAIDVEDFDR 215 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 LR+ GKG+K R+VP + +A+ + +L L G+RG LN Sbjct: 216 ANWLLRVTGKGNKTRVVPYGGVIDEALTHWLSHR-GELAQPANPALLVGVRGGRLNQREI 274 Query: 244 QRYIRQ-LRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +R I Q +RR+ L + + H RHS AT +L G DLR +Q +LGH ++TTQIYT+V Sbjct: 275 RRVIDQAIRRHPELAVGHMSPHGFRHSAATAVLEGGADLRVVQELLGHASMNTTQIYTHV 334 Query: 302 NSKNGGDWMMEIYDQTHP 319 G + + Y Q HP Sbjct: 335 ----GAERLKAAYRQAHP 348 >gi|325002510|ref|ZP_08123622.1| site-specific tyrosine recombinase XerD [Pseudonocardia sp. P1] Length = 307 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 93/308 (30%), Positives = 144/308 (46%), Gaps = 20/308 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L +L +ERG ++ TL+SY D +++ LA I + ++ T++ F++ Sbjct: 9 EDYLGHLAVERGRAQNTLRSYRLDLDRYVAHLA-----DAGIDDLGRVRETDVAGFVTAL 63 Query: 79 RTQKIGDRSLKRSLSGIKSF-LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 RT G+R L S + ++ L + + + ++ SLP L + Sbjct: 64 RT---GERPLAASSAARALAAVRGLHRFAVLEGTVPADVAAGVAPPSLPSRLPTALTVDQ 120 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 VD +L + R+ A+L LLY G RISE + ++ T+ + GKGDK Sbjct: 121 VDQLLAGCVADGP-TGLRDRALLELLYSTGGRISEIVGADLDDLDPGARTILLHGKGDKQ 179 Query: 198 RIVPLLPSVRKAILEYYDLCPFDL-NLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RIVP+ A+ Y DL P L RG ++ +R G Sbjct: 180 RIVPVGRPALAAVDAYRVRARPDLAGRGTGSPALLLNARGGRMSRQSAWHALRAAAEASG 239 Query: 256 LPLSTTA----HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 L + A HTLRH FATHLLS G D+R +Q +LGH ++TTQIYT+V D + Sbjct: 240 LGPAVVAAVSPHTLRHCFATHLLSGGADVRVVQELLGHASVATTQIYTHVTV----DTLR 295 Query: 312 EIYDQTHP 319 E+Y HP Sbjct: 296 EVYATAHP 303 >gi|254459169|ref|ZP_05072591.1| phage integrase [Campylobacterales bacterium GD 1] gi|207084062|gb|EDZ61352.1| phage integrase [Campylobacterales bacterium GD 1] Length = 277 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 88/310 (28%), Positives = 148/310 (47%), Gaps = 51/310 (16%) Query: 17 ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 E + +++ + + R LSK ++++Y+ D E+++ I I L + +F+S Sbjct: 10 ELEAFIEYISVTRALSKKSVEAYKGDLSSI--------EDELQIPLI-NLESNSVLSFLS 60 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ--- 133 K + + R+L R LS I +F + K + E + K LP+ L+ K+ Sbjct: 61 KYKNK----RTLNRKLSAINAFFDFCYKSHFSAEKTKYKFAKIPKL--LPKFLSYKEIQN 114 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 +L L+D W+ R+ A++ L+ G RISE L+L ++I D +R K Sbjct: 115 SLLLIDR--------NSWLGLRDYALIIFLFASGARISECLALRREDIEDGWLHIR-HAK 165 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP----GVFQRYIRQ 249 G+K RIVP+ AI Y + P + ++ +G L+ + Q+Y Sbjct: 166 GEKERIVPVAKVALDAISTYLNEKPKENEY-----VWCNYKGDALSRISAYKITQKY--- 217 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 L+ + H LRHS+AT L+S G DLR +Q +LGH L TTQIYT++ ++ Sbjct: 218 --------LNVSPHVLRHSYATSLISGGADLRVVQELLGHASLLTTQIYTHIQKQD---- 265 Query: 310 MMEIYDQTHP 319 + E + HP Sbjct: 266 LKETVEVCHP 275 >gi|225388004|ref|ZP_03757728.1| hypothetical protein CLOSTASPAR_01737 [Clostridium asparagiforme DSM 15981] gi|225045926|gb|EEG56172.1| hypothetical protein CLOSTASPAR_01737 [Clostridium asparagiforme DSM 15981] Length = 283 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 88/287 (30%), Positives = 145/287 (50%), Gaps = 20/287 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 LE E+ SK T+ SY+ D L+ LA Y E K I +++ T + ++I + Sbjct: 12 LENEKKASKNTVISYQRD----LVQLAAYLEAK-GITEAEKVTKTSLNSYILYLEKEGKA 66 Query: 85 DRSLKRSLSGIKSFLKY-LKKRKITTE-SNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 ++ R L+ IK+F Y L++ +I + + + ++K + +NE N L Sbjct: 67 TTTISRELASIKAFFHYELREGRIRRDPAEFIKAPKVEKKAPVILTVNEV-------NAL 119 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 L + + R+ A+L LLY G+R+SE +L LT N+ T R + K R+V Sbjct: 120 LCQPGDRTPKELRDKAMLELLYATGIRVSELISLKLTDVNMQVGYITCRDRSKE---RMV 176 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P + R+A+++Y +L LF G+ ++ F + I+Q G+ Sbjct: 177 PFGKNARQALVQYMGEARTELLKGKNSDWLFTNCNGQAMSRQGFWKLIKQYGEKAGIKSD 236 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 T HTLRHSFA HL+ +G D+ ++Q++LGH +TTQIYTN + +G Sbjct: 237 ITPHTLRHSFAAHLIRSGADIHAVQAMLGHSDTATTQIYTNYTASSG 283 >gi|307721281|ref|YP_003892421.1| tyrosine recombinase XerD subunit [Sulfurimonas autotrophica DSM 16294] gi|306979374|gb|ADN09409.1| tyrosine recombinase XerD subunit [Sulfurimonas autotrophica DSM 16294] Length = 275 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 91/308 (29%), Positives = 152/308 (49%), Gaps = 37/308 (12%) Query: 17 ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 E + +L+ + + R LSK ++++Y+ D E+K++ + L + + +S Sbjct: 4 ELEAFLEYITVTRALSKKSVEAYKSDLCAI--------EKKLS----KPLICLDTQKLMS 51 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + K R+L R LS + +F ++ K+ +++ L + K LP+ L+ + L+ Sbjct: 52 VLFSYK-NKRTLNRKLSSVNAFFEFCYKQHFSSQKTKLKFAKIPKL--LPKFLSYEDILS 108 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 +D + T WI R+ A++ LY G RISE L L +I + +R KG+K Sbjct: 109 GLDLI-----DRTNWIGKRDYALILFLYASGTRISECLELMLGDIEEGWLHVR-HAKGEK 162 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 RIVPL +KA+ EY F +N + GK ++ I Q +YLG+ Sbjct: 163 ERIVPLAKVAKKAVDEYM----FASAINKEYVWCNYQGGKLSRISAYK--ITQ--KYLGV 214 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRHS+AT L+ G DLR +Q +LGH L TTQIYT++ ++ D + + Sbjct: 215 ----SPHVLRHSYATSLIRGGADLRVVQELLGHASLLTTQIYTHIQKQDLKDTV----EV 266 Query: 317 THPSITQK 324 HP +K Sbjct: 267 CHPMAKEK 274 >gi|160888416|ref|ZP_02069419.1| hypothetical protein BACUNI_00833 [Bacteroides uniformis ATCC 8492] gi|156862093|gb|EDO55524.1| hypothetical protein BACUNI_00833 [Bacteroides uniformis ATCC 8492] Length = 294 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 81/307 (26%), Positives = 152/307 (49%), Gaps = 25/307 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++L L ER SK T++ Y D ++ L + EE + T + +R +I+ Sbjct: 5 DSFLDYLLHERNYSKGTVEYYRAD----ILELQRFGEEMLGDLTPLDVDAELVREWIASL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + ++ R LS ++++ K+L +R + + KK LP L E + L+ Sbjct: 61 MDKGLASNTINRKLSSVRTYYKFLLRRGKVAVDPLRKVTGPKKKKPLPVFLREGEMNRLL 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D++ E R+ I+ + Y G+R+SE + L +++ S +++ GK +K R Sbjct: 121 DDMDFGEGFEG----CRDHMIIEMFYATGMRLSELIGLDDKDVDFSASLVKVTGKRNKQR 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-----FRGIRGKPLNPGVFQRYI-RQLRR 252 ++P + +++ EY ++ N +P+ F GK L G+ + R L + Sbjct: 177 LIPFDEELGRSMREYVNV------RNEAVPVRSDAFFVRKNGKRLYRGIVACLVKRNLSK 230 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 + + + H LRH+FAT +L+NG DL SI+ +LGH L+TT++YT+ + + + Sbjct: 231 VVTVK-KRSPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHTTFEE----LKK 285 Query: 313 IYDQTHP 319 +Y+Q HP Sbjct: 286 VYNQAHP 292 >gi|115352658|ref|YP_774497.1| site-specific tyrosine recombinase XerD [Burkholderia ambifaria AMMD] gi|115282646|gb|ABI88163.1| tyrosine recombinase XerD [Burkholderia ambifaria AMMD] Length = 322 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 83/279 (29%), Positives = 134/279 (48%), Gaps = 15/279 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E GL++ TL +Y D F +LA + + + + + +I+ R K Sbjct: 41 LWLEHGLARNTLDAYRRDLVLFSQWLA--ATHDVPLDSADE---AMLIGYIAARSDGKA- 94 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S R LS + + + + + L + + K++ P L+E Q L+ + Sbjct: 95 -TSSNRRLSVFRRYYGWAVREHHASADPTLRITSAKQAARFPSTLSEAQVEALLGAPDIG 153 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 T + R+ +L L+Y GLR+SE ++L + ++ +R+ GKG K R+VP Sbjct: 154 TP-----LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPF-G 207 Query: 205 SVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 V +E Y D P L LF RG + F I++ + + + Sbjct: 208 EVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSP 267 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V Sbjct: 268 HTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 306 >gi|238784731|ref|ZP_04628734.1| Tyrosine recombinase [Yersinia bercovieri ATCC 43970] gi|238714327|gb|EEQ06336.1| Tyrosine recombinase [Yersinia bercovieri ATCC 43970] Length = 267 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 71/264 (26%), Positives = 132/264 (50%), Gaps = 12/264 (4%) Query: 56 EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115 E++ + + L ++R+ +S+ + + SL LS ++SFL +L + + + Sbjct: 9 EQMGLAHWQTLDAAQVRSLVSRSKRAGLHASSLALRLSALRSFLNWLVSQGVMQANPAKG 68 Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175 + + LP+ ++ + L+D L + R+ A+L ++YG GLR+SE + Sbjct: 69 VSTPRSGRHLPKNIDVDEVDKLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVG 122 Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235 + +++ + + GKG K R VP+ + + Y+ L +L +F G Sbjct: 123 MNCKHVDLASGEVWVMGKGSKERKVPIGKTAVTWL--YHWLALRELFEPQDDAIFLANTG 180 Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 K ++ Q+ + G+ H LRHSFATH+L + GDLR++Q +LGH L+TT Sbjct: 181 KRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTT 240 Query: 296 QIYTNVNSKNGGDWMMEIYDQTHP 319 QIYT+++ ++ + +YD HP Sbjct: 241 QIYTHLDFQH----LATVYDAAHP 260 >gi|124006330|ref|ZP_01691164.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134] gi|123987987|gb|EAY27658.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134] Length = 299 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 83/304 (27%), Positives = 149/304 (49%), Gaps = 29/304 (9%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKRRTQKI 83 L++ER LS+ +L++Y D ++F +L E + + ++ I+ F+S I Sbjct: 14 LKLERSLSENSLEAYLHDIQKFSDYL-----EMAGLSILPAEVKADHIKKFLSYLAKLGI 68 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 S R LSGIK+F KYL + +N+ + +P L+ ++ L+ + L Sbjct: 69 AASSQARILSGIKAFYKYLMLEETIERDPSVNVHTPRIDRKIPDVLSLQEIEDLLAVIDL 128 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 T ARN A++ +LY GLR++E + L N+ D LRI GK +K R VP+ Sbjct: 129 STPE-----GARNRAMIEVLYSSGLRVTELIELKISNLYLDIGFLRIIGKANKERFVPIG 183 Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPL--------FRGIRGKPLNPGVFQRYIRQLRRYLG 255 + ++ Y + N+ +P+ F RG ++ + I+++ Sbjct: 184 REAARYLISYIE------NIRSNVPVKPNNEDFVFLNRRGTKISRVMVFMIIKEVALLAD 237 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + + HT RHSFATHL+ G +++++Q +LGH ++TT+IY ++ D + + Sbjct: 238 IKKNISPHTFRHSFATHLILGGANIKAVQEMLGHENITTTEIYKRLDQ----DILRQTLL 293 Query: 316 QTHP 319 + HP Sbjct: 294 EFHP 297 >gi|332297603|ref|YP_004439525.1| Tyrosine recombinase xerC [Treponema brennaborense DSM 12168] gi|332180706|gb|AEE16394.1| Tyrosine recombinase xerC [Treponema brennaborense DSM 12168] Length = 308 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 78/261 (29%), Positives = 131/261 (50%), Gaps = 21/261 (8%) Query: 66 LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 ++ T++R I + +K S+ R ++ ++S Y ++ + + + +K+ L Sbjct: 54 VTVTDLRFCIGELSRKKSAASSVNRFIAAVRSLFAYCRRFEYIKSNPATELHTVKQPRHL 113 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 PR + E + VD + +T R++AI +LY G R+SE SL + D Sbjct: 114 PRFMTESE----VDALCSQPERKTLLWQTRDTAIFEMLYSSGCRVSELASLRLSDFSADF 169 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNP-GVF 243 + + GKG K R V KA+ Y + N + +F ++G PL G+ Sbjct: 170 RSAVVTGKGGKDRRVFFSEQAGKALAGYLRERAARIPKNRTVSAVFINMQGTPLTTRGI- 228 Query: 244 QRYIRQLRRYLGL-----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 RYI + RY GL P+S H RH+FAT +LS+G D+R +Q +LGH +STTQ Y Sbjct: 229 -RYI--VSRYSGLEGTDKPVS--PHAFRHTFATSMLSHGADVRVVQELLGHSSISTTQRY 283 Query: 299 TNVNSKNGGDWMMEIYDQTHP 319 T++ ++ ++EIY++ HP Sbjct: 284 THITTEQ----LIEIYNRAHP 300 >gi|41407506|ref|NP_960342.1| site-specific tyrosine recombinase XerD [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395859|gb|AAS03725.1| hypothetical protein MAP_1408 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 313 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 88/323 (27%), Positives = 149/323 (46%), Gaps = 25/323 (7%) Query: 9 IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68 + + L + Q +L +L IERG++ TL SY D R++ L+ I + ++ Sbjct: 1 MTTVALETQLQGYLDHLTIERGVAANTLSSYRRDLRRYTKHLS-----DRGISDLAKVGE 55 Query: 69 TEIRAFISKRRTQKIGD----------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118 ++ F+ R GD S R+L ++ ++L + +R Sbjct: 56 DDVSEFLVALRR---GDPDTGAAALSAVSAARALIAVRGLHRFLAAEGLAELDVARAVRP 112 Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178 LP++L Q L L++ + + + RN A+L LLY G RISEA+ L Sbjct: 113 PTPGRRLPKSLTIDQVLALLEAAGGESPADGP-LTLRNRALLELLYSTGARISEAVGLDV 171 Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGK 236 ++ ++ ++GKG K R+VP+ A+ Y ++L + +F +RG Sbjct: 172 DDVDTQARSVLLRGKGGKQRLVPIGRPAVAALDAYLVRGRWELARRGRGTPAIFLNVRGG 231 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 L+ + ++ G+ + H LRHSFATHLL G D+R +Q +LGH ++TTQ Sbjct: 232 RLSRQSAWQVLQDAAERAGITSGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQ 291 Query: 297 IYTNVNSKNGGDWMMEIYDQTHP 319 IYT V + E++ + HP Sbjct: 292 IYTMVTVHA----LREVWAEAHP 310 >gi|262163686|ref|ZP_06031427.1| tyrosine recombinase XerC [Vibrio mimicus VM223] gi|262027902|gb|EEY46566.1| tyrosine recombinase XerC [Vibrio mimicus VM223] Length = 310 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 79/302 (26%), Positives = 152/302 (50%), Gaps = 16/302 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L E+GLS T ++Y+ +LA ++ + + QL +R + + Q + Sbjct: 24 LHSEKGLSLYTQRNYKQQLETMARYLA-----QMGLTSWPQLDAAWVRQLVVLGKRQGMK 78 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S+ LS ++SFL +L R + + +K LP+ L+ + L++ Sbjct: 79 ASSISTRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRPLPKNLDVDEMAQLLEVT--- 135 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + + R+ AI+ L+YG GLR++E +S+ +++ +R+ GKG+K R V Sbjct: 136 ---DDDPLSIRDRAIMELMYGSGLRLAELVSIDMKDVNLRDGEIRVIGKGNKERKVWFAG 192 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 ++ + ++ L N + + LF G ++ Q+ + + + + + H Sbjct: 193 QAQEWVGKWLKLRSQLANSD-ETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISPHK 251 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ ++ + ++YDQ HP +K Sbjct: 252 LRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQH----LAQVYDQAHPRARKK 307 Query: 325 DK 326 +K Sbjct: 308 NK 309 >gi|113866150|ref|YP_724639.1| site-specific tyrosine recombinase XerC [Ralstonia eutropha H16] gi|113524926|emb|CAJ91271.1| Site-specific recombinase XerC/Integrase [Ralstonia eutropha H16] Length = 359 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 92/333 (27%), Positives = 154/333 (46%), Gaps = 40/333 (12%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 ++ P L+ +WL+ R L++ TL SY D R A Y + Sbjct: 18 SDGPPPAPEPLVTRYLDWLRG---SRKLAEHTLTSYSRDLRVLQGHAARYAPGVALLA-- 72 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKS 122 L IR F ++ + S+ R+LS + F ++ + N ++ +R + Sbjct: 73 --LQTHHIRNFAARLHGAGLVGTSIARTLSAWRGFFQWAARHGHGVTVNPVDGVRAPRSG 130 Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDA---RNSAILYLLYGCGLRISEALSLTPQ 179 ++LP+AL+ + A+ LV +H DA R+ A+ L Y GLR+SE + L + Sbjct: 131 HALPKALSVEHAVALV-------AHPAG-TDAQALRDQAVHELFYSSGLRLSELVQLDLR 182 Query: 180 NIMDDQ-----------STLRIQGKGDKIRIVPLLPSVRKAILEYYD-----LCPFDLNL 223 D + + + GKG + R VP+ +A+ + L P L Sbjct: 183 YADADGYRSSGWLDLAGAEVTVTGKGSRQRSVPVGSKAIEALRAWLAVRDTLLRPGALPE 242 Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283 + LF G RG+ L+ Q ++Q G+P H LRHSFATH+L + GDLR++ Sbjct: 243 DAHA-LFLGPRGRRLSMRTVQLRLKQQALRAGVPADVHPHMLRHSFATHVLQSSGDLRAV 301 Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 Q +LGH +STTQ+YT ++ ++ + ++YD+ Sbjct: 302 QEMLGHASISTTQVYTALDFQH----LAKVYDK 330 >gi|114049118|ref|YP_739668.1| tyrosine recombinase XerC [Shewanella sp. MR-7] gi|123131002|sp|Q0HQJ4|XERC_SHESR RecName: Full=Tyrosine recombinase xerC gi|113890560|gb|ABI44611.1| tyrosine recombinase XerC [Shewanella sp. MR-7] Length = 299 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 76/253 (30%), Positives = 135/253 (53%), Gaps = 13/253 (5%) Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 ++K + + RSL LS IK + ++L + + + + K++ LP+ ++ Sbjct: 59 LAKLHRKGLSPRSLSLWLSAIKQWGEFLLRSGVIELNPAKGLSAPKQAKPLPKNID---- 114 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 + + ++L ++ + R+ AI+ L Y GLR++E +L ++ DQ +R+ GKG Sbjct: 115 VDSISHLLAIEGNDP--LTLRDKAIMELFYSSGLRLAELAALDLSSVQYDQHEVRVLGKG 172 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 +K RIVP+ +AI + C ++ LF +GK L+ Q + + + Sbjct: 173 NKERIVPVGRYAIEAISAWLK-CRKQISCEDN-ALFVTEKGKRLSHRSIQARMSKWGQEQ 230 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 L + H LRHSFATH+L + DLR++Q +LGH LSTTQIYT+++ ++ + ++Y Sbjct: 231 ALSMRVHPHKLRHSFATHMLESSADLRAVQELLGHENLSTTQIYTSLDFQH----LAKVY 286 Query: 315 DQTHP-SITQKDK 326 D HP + Q+DK Sbjct: 287 DNAHPRAKKQQDK 299 >gi|317477767|ref|ZP_07936960.1| tyrosine recombinase XerC [Bacteroides sp. 4_1_36] gi|316906112|gb|EFV27873.1| tyrosine recombinase XerC [Bacteroides sp. 4_1_36] Length = 294 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 81/307 (26%), Positives = 152/307 (49%), Gaps = 25/307 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++L L ER SK T++ Y D ++ L + EE + T + +R +I+ Sbjct: 5 DSFLDYLLHERNYSKGTVEYYRAD----ILELQRFGEEMLGDLTPLDVDAELVREWIASL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + ++ R LS ++++ K+L +R + + KK LP L E + L+ Sbjct: 61 MGKGLASNTINRKLSSVRTYYKFLLRRGKVAVDPLRKVTGPKKKKPLPVFLREGEMNRLL 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D++ E R+ I+ + Y G+R+SE + L +++ S +++ GK +K R Sbjct: 121 DDMDFGEGFEG----CRDHMIIEMFYATGMRLSELIGLDDKDVDFSASLVKVTGKRNKQR 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-----FRGIRGKPLNPGVFQRYI-RQLRR 252 ++P + +++ EY ++ N +P+ F GK L G+ + R L + Sbjct: 177 LIPFDEELGRSMREYVNV------RNEAVPVRSDAFFVRKNGKRLYRGIVACLVKRNLSK 230 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 + + + H LRH+FAT +L+NG DL SI+ +LGH L+TT++YT+ + + + Sbjct: 231 VVTVK-KRSPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHTTFEE----LKK 285 Query: 313 IYDQTHP 319 +Y+Q HP Sbjct: 286 VYNQAHP 292 >gi|269926944|ref|YP_003323567.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798] gi|269790604|gb|ACZ42745.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798] Length = 310 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 85/307 (27%), Positives = 156/307 (50%), Gaps = 16/307 (5%) Query: 12 FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71 F+ L + ++ +LE ER S T +Y+ D QF +L + K I + ++ ++I Sbjct: 2 FDGLSSVEEFISHLESERHFSNNTTAAYKNDILQFHDWL----QGKDHINSWAAVTSSDI 57 Query: 72 RAFI---SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 + ++ + + + R ++ IKSF ++L + + ++ ++ + + P+A Sbjct: 58 QDYLLYLKGNQDRAYAPSTQARKMAAIKSFFQFLVAKSVVDQNPASDLISPRVQKYWPKA 117 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 ++ ++ N+LL + +++ + R+ A+L +LY GLR+SE +SL +I D+S Sbjct: 118 ISVQEV-----NMLLAAASDSETPEGIRDRAMLEVLYRTGLRVSELVSLNVDDINLDESH 172 Query: 188 LRIQGKGDKIRIVPL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 L+ G+G K R VPL P+V L P + + LF RG+ L F Sbjct: 173 LKCIGRG-KTRKVPLSQPAVDVLKLYLERSRPLLVRGQDEQALFVNHRGQRLTRQGFWLI 231 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 ++ G+ T HTLRHSFA H++ G DLR +Q LGH ++TTQ+Y + S + Sbjct: 232 LKAYASEAGIK-GITPHTLRHSFAAHMIDGGIDLRQVQEWLGHASITTTQVYRQIKSNSH 290 Query: 307 GDWMMEI 313 + +++I Sbjct: 291 SEKIIDI 297 >gi|167644692|ref|YP_001682355.1| integrase family protein [Caulobacter sp. K31] gi|167347122|gb|ABZ69857.1| integrase family protein [Caulobacter sp. K31] Length = 308 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 87/311 (27%), Positives = 140/311 (45%), Gaps = 30/311 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ + +ER ++ TL +YE D +FLA + + S I A+ + Sbjct: 12 FLEMMAVERAAARNTLTAYEKDLADARLFLASRGD-------LDGASAEAIEAYFADLGA 64 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + + R S ++ F +++ + + K LP+ L+ L L+ Sbjct: 65 RGLSPATAARRRSALRQFYRFVLGEGWRDDDPSRRVEAPKAGRPLPKVLSRDAVLRLIAA 124 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + R + ++ LLY GLRISE L+L + D + L ++GKG K R+ Sbjct: 125 AAAKDGAQG----LRLACMIELLYASGLRISELLNLPLAALARDPAFLMVKGKGGKERLA 180 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-LNPG------VFQRYIRQLRRY 253 PL + R A+ Y + P L G++ P L P + R + QL Sbjct: 181 PLNDAARTAVKAYLEARPQFLPKGAP---NGGVKDSPWLFPSRAKSGRLTARRVSQLLED 237 Query: 254 LGLPL-----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 + + + H LRH+FATHLL G DLR IQ++LGH ++TTQIYT+V GD Sbjct: 238 AAIAAGIDRQTVSPHVLRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHV----AGD 293 Query: 309 WMMEIYDQTHP 319 + E+ HP Sbjct: 294 HLAEVVKSKHP 304 >gi|150390286|ref|YP_001320335.1| tyrosine recombinase XerD [Alkaliphilus metalliredigens QYMF] gi|149950148|gb|ABR48676.1| tyrosine recombinase XerD [Alkaliphilus metalliredigens QYMF] Length = 294 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 95/307 (30%), Positives = 157/307 (51%), Gaps = 28/307 (9%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 N++ L+ E+ LS TL+SY+ D +QF +LA I I + + T I ++ + Sbjct: 7 NFIIYLKNEKHLSTNTLESYKRDVKQFTSYLA-----GSDIHDIEETTKTTIITYLFYLQ 61 Query: 80 TQKIGDRSLKRSLSGIKSFLKYL---KKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + ++ RSL+ ++SF YL KK I N+ + + +KK P + + + Sbjct: 62 KEGRAASTISRSLASLRSFYHYLLLHKKVDIDPTFNLESPKMVKK----PPNILTLEEVE 117 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L+ L+T+ + R+ A+L LLY G+R++E +SL +++ + +R K Sbjct: 118 LLLQQPLNTTPK----GIRDKAMLELLYATGIRVTELISLNLEDVNVNLGYIRC-CNNTK 172 Query: 197 IRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 R++P+ L +++K I Y D D N + LF G L F + I+ + Sbjct: 173 ERVIPIGTLSLIALQKYINYYRDAFTKD---NEEKSLFLNYHGGRLTRQGFWKIIKVYTK 229 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 + S T HTLRHSFATHL+ NG DL+S+Q +LGH +STTQ+Y + D Sbjct: 230 QAAIEKSITPHTLRHSFATHLIENGADLKSVQEMLGHSDISTTQVYAQLTKHKIKD---- 285 Query: 313 IYDQTHP 319 +Y++THP Sbjct: 286 VYNKTHP 292 >gi|254508806|ref|ZP_05120917.1| tyrosine recombinase XerC [Vibrio parahaemolyticus 16] gi|219548263|gb|EED25277.1| tyrosine recombinase XerC [Vibrio parahaemolyticus 16] Length = 310 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 84/330 (25%), Positives = 154/330 (46%), Gaps = 48/330 (14%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTR---QFLIFLAFYTEEKITIQTIRQLSYTE 70 L K + + + L E+GLS T ++Y+ Q L+ L ++ +RQL+ Sbjct: 12 LQKPLERFYEYLRSEKGLSLHTQRNYKQQLETMAQHLVQLGLKDWSQVDSAWVRQLASKG 71 Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 +R + SL LS ++SF +L R + + + +K LP+ L+ Sbjct: 72 MR--------DGMKASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLD 123 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 + L++ +E + R+ A++ ++YG GLR++E +S+ +++ +R+ Sbjct: 124 VDEVGQLLE------VNEDDPLSIRDRAMMEMMYGAGLRLAELVSINVKDVSFFSGEIRV 177 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF------- 243 GKGDK R VP + + ++ + RG K P +F Sbjct: 178 VGKGDKERKVPFSGMASEWVGKWMKV--------------RGTLAKSDEPALFVSKLGVR 223 Query: 244 ------QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 Q+ + + + + + H LRHSFATH+L + +LR++Q +LGH +STTQI Sbjct: 224 ISHRNVQKRMAEWGQKQAVASHISPHKLRHSFATHVLESSNNLRAVQELLGHENISTTQI 283 Query: 298 YTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327 YT+++ ++ + E+YDQ HP ++ K Sbjct: 284 YTHLDFQH----LAEVYDQAHPRAKKRSNK 309 >gi|190572731|ref|YP_001970576.1| site-specific tyrosine recombinase XerD [Stenotrophomonas maltophilia K279a] gi|190010653|emb|CAQ44262.1| putative integrase/recombinase [Stenotrophomonas maltophilia K279a] Length = 325 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 96/325 (29%), Positives = 155/325 (47%), Gaps = 25/325 (7%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 LPE+ + + ++ Q +L + E GL++ TL SY D L LA + + + + Sbjct: 15 QQLPELRADDSMRI-QRFLDAIWAENGLARATLDSYRRD----LEGLARWMDGRDG--GL 67 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 + + +++ R RS R LS +++F +R E + K Sbjct: 68 AGIERPGLFDYLAWRTRHGWSPRSNARLLSALRAFFADGVRRGERGEDPSALLDPPKLPR 127 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 LP+AL E+Q +D +L ++ + R+ A+L L+Y GLR+SE + L + Sbjct: 128 LLPKALAERQ----IDALLAVPDIDSP-LGLRDRAMLELMYAAGLRVSELVLLPATAVNL 182 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLN-------LNIQLPLFRGIRG 235 Q LR+ GKG K R+VPL + + Y P + + Q PLF Sbjct: 183 RQGVLRVTGKGSKERLVPLGEESQHWLERYLQASRPLLVGKGKVQALADGQTPLFVEPTL 242 Query: 236 KPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 L F +++ + G+ P + H LRHSFATHLL+ G DLR++Q +LGH LST Sbjct: 243 HALTRQAFWHLVKRHAQVAGIDPARISPHGLRHSFATHLLNRGADLRALQMLLGHSSLST 302 Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHP 319 TQIYT V ++ + +++ + HP Sbjct: 303 TQIYTLVAREH----LQKLHARHHP 323 >gi|93005052|ref|YP_579489.1| phage integrase [Psychrobacter cryohalolentis K5] gi|92392730|gb|ABE74005.1| tyrosine recombinase XerC subunit [Psychrobacter cryohalolentis K5] Length = 349 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 90/323 (27%), Positives = 149/323 (46%), Gaps = 25/323 (7%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT--- 69 ELL WL L + R S TL +Y Q +FL ++L++T Sbjct: 41 ELLAPVHRWLNVLSV-RNHSPHTLTAYFAGLNQLALFLRG-----------KRLTWTRCD 88 Query: 70 --EIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126 ++ IS+R + K+ S+++ LS I+ F +L + + + + + LP Sbjct: 89 KRQLAQHISQRLDEDKLSLASVQQELSAIRHFYGWLIEEDLARINPTTGYQLKRSPRPLP 148 Query: 127 RALNEKQALTLVDNVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 + L+D + T + + W+ R+ A+ LLY GLR+ E ++L ++ Sbjct: 149 SIADVDLLTQLLDQEIPDTPEQARLWL--RDKAMFELLYSSGLRVGELVALDIVDVDLAD 206 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245 +R+ GKG+K R+VPL AI Y + Q G L+ Q+ Sbjct: 207 LRVRVTGKGNKTRLVPLGIKAADAIRRYLPHRNLWVEQMDQALFISEKLGTRLSTRAVQQ 266 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 ++ G+ + H LRH FA+H+LS GDLR++Q +LGH +STTQIYT+V+ Sbjct: 267 RLKVAATRAGIAQNMYPHLLRHCFASHMLSGSGDLRAVQEMLGHSDISTTQIYTHVDFAK 326 Query: 306 GGDWMMEIYDQTHPSITQKDKKN 328 + ++YD+ HP T K + Sbjct: 327 ----LTQVYDRAHPRATHVSKDS 345 >gi|218264364|ref|ZP_03478221.1| hypothetical protein PRABACTJOHN_03917 [Parabacteroides johnsonii DSM 18315] gi|218222062|gb|EEC94712.1| hypothetical protein PRABACTJOHN_03917 [Parabacteroides johnsonii DSM 18315] Length = 302 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 78/282 (27%), Positives = 138/282 (48%), Gaps = 8/282 (2%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++L L ER S+ T+ +Y D +QF F+ E+K I ++ +R +I Sbjct: 6 DSFLDCLRYERNYSEYTIGAYSKDLQQFEDFVK---EKKEGIFVPEEVDADIVRNWIISL 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 KI S+ R LS +KSF K+L K+ + + + + K LP + EK L+ Sbjct: 63 LDNKISPVSVNRKLSSLKSFFKFLMKQGFVSVNPLRFVTGPKTKKPLPTFVKEKDMEELL 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + + R+ IL +LY G+R SE + L +I D +++ GK +K R Sbjct: 123 DG----DGFDEDFEGVRDRLILEMLYDTGVRRSELVGLQDIDIDYDAMLIKVTGKRNKQR 178 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 ++P ++ +L Y ++ ++ R G+ L+ G+ +++ + Sbjct: 179 LIPFAERLKNLMLAYTEVRNREVGAGSGWFFVRK-NGEQLSTGILYTIVKKKLSDIPTLA 237 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + H LRHSFAT +L+NG +L +++ +LGH L++T IYT+ Sbjct: 238 KCSPHVLRHSFATSMLNNGAELNAVKELLGHSSLASTSIYTH 279 >gi|227325794|ref|ZP_03829818.1| site-specific tyrosine recombinase XerC [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 311 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 81/302 (26%), Positives = 147/302 (48%), Gaps = 25/302 (8%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L+ L++ER LS LT SY RQ + + + R+L + +R+ +S+ + Sbjct: 24 LRYLKVERQLSPLTQTSY---LRQLSAVITILSAAGVA--DWRRLDASGVRSVVSRSKRD 78 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 + SL LS ++SFL ++ R + + + + LP+ ++ + N Sbjct: 79 GLHSSSLALRLSALRSFLDWMVSRGVLVANPAKGVSTPRAGRPLPKNMDVDET-----NR 133 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 LL + + + R+ +L ++YG GLR++E + + Q+I + + GKG K R +P Sbjct: 134 LLEINLDDP-LAVRDRTMLEVMYGAGLRLAELVGMDYQHIDLASGEIWVMGKGSKERKLP 192 Query: 202 LLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 + + + + L P D + F +G+ ++ Q+ + G+ Sbjct: 193 IGKTAVTWLERWLALRELFGPQDDAV------FISNQGRRISMRNVQKRFAEWGIKQGIN 246 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 H LRHSFATH+L + GDLR++Q +LGH L+TTQIYT+++ ++ + +YD Sbjct: 247 SHVHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----LASVYDAA 302 Query: 318 HP 319 HP Sbjct: 303 HP 304 >gi|148284235|ref|YP_001248325.1| site-specific tyrosine recombinase XerD [Orientia tsutsugamushi str. Boryong] gi|146739674|emb|CAM79467.1| site-specific recombinase [Orientia tsutsugamushi str. Boryong] Length = 309 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 91/318 (28%), Positives = 158/318 (49%), Gaps = 26/318 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ + E+ +S +L +Y+ D + F FL + I +Q+ ++ +I +FI Sbjct: 5 EQFLETVLAEKNVSANSLLAYKRDLQDFSDFL-----KSIQLQSSLAVTTKDIDSFIQHL 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 ++ + RS+ R +S ++ + +L + + N+ + S LP+ L+ K+ L+ Sbjct: 60 LSKNLSFRSIARKISTLRQYYLFLLTENVVQPDLVTNIEVPRYSTKLPKILSIKEIKMLI 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------G 192 D T+ E R A++ LLY GLR+SE +S+ ++ D +T +I+ G Sbjct: 120 DYCFKDTTAE----GIRTLAMICLLYSTGLRVSELVSVKITDLKFDHNTGKIKNHFVILG 175 Query: 193 KGDKIRIV---PLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYI 247 KG+K R+V L V L Y D PF N + LF + + F + Sbjct: 176 KGNKERLVIMNDLTGDVISRYLPYRDFFSPFK-NAKNSVYLFPSKAKQGYMTRQNFAILL 234 Query: 248 RQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 + GL P + + H LRHSFA+HLL G DL+ IQ +LGH +S+TQIYT+V Sbjct: 235 KNAAINAGLSPDNVSPHILRHSFASHLLEGGADLKVIQELLGHVDISSTQIYTHVQP--- 291 Query: 307 GDWMMEIYDQTHPSITQK 324 + + + ++ HP+ +K Sbjct: 292 -ERLKHVIEKYHPASLKK 308 >gi|77163532|ref|YP_342058.1| Phage integrase [Nitrosococcus oceani ATCC 19707] gi|254436437|ref|ZP_05049942.1| site-specific recombinase, phage integrase family protein [Nitrosococcus oceani AFC27] gi|76881846|gb|ABA56528.1| Phage integrase [Nitrosococcus oceani ATCC 19707] gi|207087971|gb|EDZ65245.1| site-specific recombinase, phage integrase family protein [Nitrosococcus oceani AFC27] Length = 310 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 86/308 (27%), Positives = 148/308 (48%), Gaps = 25/308 (8%) Query: 11 SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70 + + + R+++L +L +G S+ T +Y D + +LA ++ Q ++ + Sbjct: 5 AVDFWQARKDFLAHLHYAKGYSQGTCYAYNSDLGIWGRWLAEVGKDWC------QATHAD 58 Query: 71 IRAFIS-KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 F++ + R + + R S + SF K+ K + I K+ +P L Sbjct: 59 TEKFVAWQMRERGAKAHIVARRSSCLGSFYKWAMKNALVESDPIYLADKPKRPYRIPVWL 118 Query: 130 N--EKQAL--------TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 E+QAL L +N+ T K + R + L+ GLRISEAL++ + Sbjct: 119 EKEEQQALQEATQRIDNLPENIFGRTQEHIKAVRRRYDVLFGLILNSGLRISEALAVKVR 178 Query: 180 NI--MDD-QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 ++ M+ ++RI GKG++ R+VPL + + + D + + P GK Sbjct: 179 DVRVMNGIAKSVRIIGKGNRERLVPLPEAFGQVFGAWLQGREGDDFVFAKAP-----GGK 233 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 P P + Y+R+L G+ T H LRH++AT LL +G +L IQ++LGH LSTTQ Sbjct: 234 PPGPHAARAYLRRLIERAGIDKPVTPHKLRHTYATRLLESGAELVDIQALLGHVDLSTTQ 293 Query: 297 IYTNVNSK 304 IYT+V+ + Sbjct: 294 IYTHVSEE 301 >gi|37678273|ref|NP_932882.1| site-specific tyrosine recombinase XerC [Vibrio vulnificus YJ016] gi|37197012|dbj|BAC92853.1| site-specific recombinase XerC [Vibrio vulnificus YJ016] Length = 322 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 83/304 (27%), Positives = 152/304 (50%), Gaps = 16/304 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L E+GLS T ++Y +Q L +A + + ++ Q+ +R K + + Sbjct: 30 LRAEKGLSLHTQRNY----KQQLETMAEHLHS-MGLKAWPQVDAGWVRQLAGKGMREGMK 84 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S+ LS ++SF +L R I T + + +K LP+ L+ + N LL Sbjct: 85 ASSIATRLSSLRSFFDFLILRGILTANPAKGVSAPRKKRPLPKNLDVDEV-----NQLLE 139 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + E + R+ AI+ L+YG GLR++E + + +++ +R+ GKG+K R VP Sbjct: 140 VN-EDDPLAIRDRAIMELMYGAGLRLAELVDIDVRDVHLRSGEIRVIGKGNKERKVPFAG 198 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 + + ++ + L + LF G ++ Q+ + + + + T H Sbjct: 199 MAVEWVGKWLKVRS-GLADPSEPALFVSKLGTRISHRSVQKRMAEWGQKQAVASHITPHK 257 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ ++ + ++YDQ HP +K Sbjct: 258 LRHSFATHILESSNNLRAVQELLGHENISTTQIYTHLDFQH----LADVYDQAHPRARKK 313 Query: 325 DKKN 328 ++ Sbjct: 314 SSQH 317 >gi|238789383|ref|ZP_04633169.1| Tyrosine recombinase [Yersinia frederiksenii ATCC 33641] gi|238722526|gb|EEQ14180.1| Tyrosine recombinase [Yersinia frederiksenii ATCC 33641] Length = 263 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 72/264 (27%), Positives = 133/264 (50%), Gaps = 12/264 (4%) Query: 56 EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115 E++ + + L ++R+ +S+ + + SL LS ++SFL +L + + + Sbjct: 5 EQMGLAHWQTLDAAQVRSLVSRSKRAGLHSSSLALRLSALRSFLDWLVSQGVLQANPAKG 64 Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175 + + LP+ ++ + L+D L + R+ A+L ++YG GLR+SE + Sbjct: 65 ISTPRSGRHLPKNIDVDEVDKLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVG 118 Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235 + +++ + + GKG K R VP+ + LE++ L +L +F G Sbjct: 119 MNCKHVDLASGEVWVMGKGSKERKVPIGKTA-VTWLEHW-LALRELFEPQDDAIFLANTG 176 Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 K ++ Q+ + G+ H LRHSFATH+L + GDLR++Q +LGH L+TT Sbjct: 177 KRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTT 236 Query: 296 QIYTNVNSKNGGDWMMEIYDQTHP 319 QIYT+++ ++ + +YD HP Sbjct: 237 QIYTHLDFQH----LATVYDAAHP 256 >gi|260905256|ref|ZP_05913578.1| tyrosine recombinase XerD [Brevibacterium linens BL2] Length = 315 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 87/321 (27%), Positives = 152/321 (47%), Gaps = 24/321 (7%) Query: 6 LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65 LPE+ + L + + +L +L ERGLS+ ++ +Y D ++ +L + + + Sbjct: 9 LPELPA-SLARAFETYLNSLRFERGLSRNSIDAYARDLARYGTWL-----NGQGMSHLGE 62 Query: 66 LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 + T + AF + + R+ R+L ++ F + + + ++ L Sbjct: 63 VERTHVEAFALHLLDENLAPRTRARALVAVRRFHGFALGEGLAATDPASEVSPPQEGLRL 122 Query: 126 PRALNEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 P+AL+ +D++ +L T+ + R +A+L LLY G RISEA+ + ++ Sbjct: 123 PKALS-------LDDIEAMLATTGGEEPAQIRAAALLELLYATGARISEAVGVDLDDLDL 175 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPL 238 + S +R+ GKG K RIVP A+ + + + LF RG L Sbjct: 176 ETSLVRLYGKGGKERIVPFGSHAATALGAWVSRTRPSMAAKARSSAPAGALFLNARGTRL 235 Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + + ++ GL + HT RHSFATHLL G D+R +Q +LGH ++TTQIY Sbjct: 236 SRQTAWQIVKDAGELAGLEAEVSPHTFRHSFATHLLEGGADIRVVQELLGHASVTTTQIY 295 Query: 299 TNVNSKNGGDWMMEIYDQTHP 319 T V+ + + E+Y +HP Sbjct: 296 TKVSEET----LREVYATSHP 312 >gi|327395064|dbj|BAK12486.1| tyrosine recombinase XerD [Pantoea ananatis AJ13355] Length = 220 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 80/230 (34%), Positives = 120/230 (52%), Gaps = 17/230 (7%) Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 ++ +YL + K+ T+ + K LP+ L+E Q VD LL ++ Sbjct: 1 MRRLFQYLYREKMRTDDPSAMLAAPKLPQRLPKDLSEAQ----VDR-LLQAPDVNVPLEL 55 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI--LE 212 R+ A+L LLY GLR+SE + LT ++ Q +R+ GKG+K R+VPL +A+ LE Sbjct: 56 RDKAMLELLYATGLRVSELVGLTLNDVSLRQGVVRVIGKGNKERLVPL---GEEAVHWLE 112 Query: 213 YY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSF 269 YY P+ LN F R + + F I+ G+ + H LRH+F Sbjct: 113 YYMEHGRPWLLNGQTLDVFFPSNRAQQMTRQTFWHRIKHYAMLAGIDSEKLSPHVLRHAF 172 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 ATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + ++ Q HP Sbjct: 173 ATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRLLHQQHHP 218 >gi|313159128|gb|EFR58503.1| tyrosine recombinase XerD [Alistipes sp. HGB5] Length = 298 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 84/281 (29%), Positives = 140/281 (49%), Gaps = 12/281 (4%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 +++E+ LS+ T++SY D RQF F+ + + + + A++ R +K Sbjct: 19 IKLEKRLSQNTVESYMRDLRQFAHFI--LRQYDVAPRKVEGTMIERYMAWLYDRGREKT- 75 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S R L GI+SF +L S + K LP L + +++ V + Sbjct: 76 --SQARCLCGIRSFFNFLLVNDQIETSPAEFVDTPKFGRPLPDILTTDEIDSIIATVDMR 133 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + TK + R+SA+L +LY CGLR+SE SL ++ + +R+ GKG+K R+VP+ Sbjct: 134 S---TKGL--RDSAMLEVLYSCGLRVSELTSLRLSDLFFGEGYIRVIGKGNKQRLVPISN 188 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 + R I Y L + + +F RG L + +++ G+ + HT Sbjct: 189 TARDKIQRY--LEERRSARSGEETVFLNNRGGQLTRVMVFTILKRAVERAGIDKHISPHT 246 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 RHSFATHLL G +R +Q +LGH + TT+IYT+++S + Sbjct: 247 FRHSFATHLLEGGASIRQVQEMLGHESILTTEIYTHLDSDH 287 >gi|27364549|ref|NP_760077.1| site-specific tyrosine recombinase XerC [Vibrio vulnificus CMCP6] gi|320154951|ref|YP_004187330.1| tyrosine recombinase XerC [Vibrio vulnificus MO6-24/O] gi|34222789|sp|Q7ZAI9|XERC_VIBVU RecName: Full=Tyrosine recombinase xerC gi|71153412|sp|Q7MQB9|XERC_VIBVY RecName: Full=Tyrosine recombinase xerC gi|27360668|gb|AAO09604.1| tyrosine recombinase XerC [Vibrio vulnificus CMCP6] gi|319930263|gb|ADV85127.1| tyrosine recombinase XerC [Vibrio vulnificus MO6-24/O] Length = 316 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 83/304 (27%), Positives = 152/304 (50%), Gaps = 16/304 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L E+GLS T ++Y +Q L +A + + ++ Q+ +R K + + Sbjct: 24 LRAEKGLSLHTQRNY----KQQLETMAEHLH-SMGLKAWPQVDAGWVRQLAGKGMREGMK 78 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S+ LS ++SF +L R I T + + +K LP+ L+ + N LL Sbjct: 79 ASSIATRLSSLRSFFDFLILRGILTANPAKGVSAPRKKRPLPKNLDVDEV-----NQLLE 133 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + E + R+ AI+ L+YG GLR++E + + +++ +R+ GKG+K R VP Sbjct: 134 VN-EDDPLAIRDRAIMELMYGAGLRLAELVDIDVRDVHLRSGEIRVIGKGNKERKVPFAG 192 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 + + ++ + L + LF G ++ Q+ + + + + T H Sbjct: 193 MAVEWVGKWLKVRS-GLADPSEPALFVSKLGTRISHRSVQKRMAEWGQKQAVASHITPHK 251 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ ++ + ++YDQ HP +K Sbjct: 252 LRHSFATHILESSNNLRAVQELLGHENISTTQIYTHLDFQH----LADVYDQAHPRARKK 307 Query: 325 DKKN 328 ++ Sbjct: 308 SSQH 311 >gi|254230112|ref|ZP_04923508.1| tyrosine recombinase XerC [Vibrio sp. Ex25] gi|151937357|gb|EDN56219.1| tyrosine recombinase XerC [Vibrio sp. Ex25] Length = 266 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 72/269 (26%), Positives = 136/269 (50%), Gaps = 11/269 (4%) Query: 57 KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116 ++ ++ Q+ +R K + + SL LS ++SF +L R + + + Sbjct: 7 EMGLKDWSQVDAGWVRQLAGKGMREGMKASSLATRLSSLRSFFDFLILRGEMSANPAKGV 66 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 +K LP+ L+ + L++ +E + R+ A++ L+YG GLR++E +S+ Sbjct: 67 SAPRKKRPLPKNLDVDEVSQLLE------VNEDDPLAVRDRAMMELMYGAGLRLAELVSV 120 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 +++ LR+ GKGDK R VP + + ++ + DL + LF G Sbjct: 121 DVRDVQLRSGELRVIGKGDKERKVPFSGMATEWVAKWLKVRG-DLAAPGEPALFVSKLGT 179 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 ++ Q+ + + + + + H LRHSFATH+L + +LR++Q +LGH +STTQ Sbjct: 180 RISHRSVQKRMAEWGQKQSVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQ 239 Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSITQKD 325 IYT+++ ++ + + YDQ HP +K+ Sbjct: 240 IYTHLDFQH----LAQAYDQAHPRARKKN 264 >gi|149177761|ref|ZP_01856361.1| integrase/recombinase [Planctomyces maris DSM 8797] gi|148843411|gb|EDL57774.1| integrase/recombinase [Planctomyces maris DSM 8797] Length = 316 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 84/305 (27%), Positives = 148/305 (48%), Gaps = 20/305 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L LE E G++ T+ +Y D QFL +Y +K + L++ + ++ Sbjct: 26 EPFLHYLEAECGMAVNTVSAYRSDIVQFL---DWYRMQKPVPLSEVDLAF--LSGYLQHL 80 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES--NILNMRNLKKSNSLPRALNEKQALT 136 +K+ ++ R L +K F +YL + ES ++LN L K LP+ L+ ++ Sbjct: 81 NRRKLAATTVSRHLVTLKLFFRYLVLEGVLAESVADLLNSPKLWKY--LPKVLSPEKV-- 136 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 N LL R+ AIL ++Y G R++E ++L ++ + R GKG+K Sbjct: 137 ---NQLLAAPCRQDRYPLRDRAILAMMYATGCRVTEIVTLPLNSVKLTEGYARCVGKGNK 193 Query: 197 IRIVPLLPSVRKAILEY--YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 R+V L P A+ Y ++ + LF GK L+ + +++ + Sbjct: 194 ERMVSLNPVAVAAVEAYLRHERPVLTRRNTTEQALFLNRGGKQLSRVMVWNIVKKNAARV 253 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G + HTLRHSFATH+++ G ++R++Q +LGH + TTQIYT+V+ + ++ Sbjct: 254 GCSKEVSPHTLRHSFATHMMAGGAEIRALQELLGHANIRTTQIYTHVDHSR----LKAVH 309 Query: 315 DQTHP 319 HP Sbjct: 310 QMYHP 314 >gi|220912288|ref|YP_002487597.1| tyrosine recombinase XerD [Arthrobacter chlorophenolicus A6] gi|219859166|gb|ACL39508.1| tyrosine recombinase XerD [Arthrobacter chlorophenolicus A6] Length = 362 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 92/334 (27%), Positives = 141/334 (42%), Gaps = 68/334 (20%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI---- 75 ++LQ++ +ERGL+ TL +Y D ++ +LA Q ++ + F+ Sbjct: 59 DYLQHMGVERGLAANTLAAYRRDLARYSRYLA-----GTGCQQPGDITRHHVTGFVRALS 113 Query: 76 -SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 +G RS R++ ++ K+ T + LP+A+ Sbjct: 114 DGSDGGTALGVRSAARTVVAVRGLHKFWALEGHTASDPASEVHPPMAGKRLPKAIT---- 169 Query: 135 LTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DD----Q 185 VD V +L + R+ A+L LY G RISEA+ L +I DD Sbjct: 170 ---VDEVTRILEAAGTDTATGLRDRALLEFLYSTGARISEAVGLDVDDISLAGDDTEQGP 226 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL------- 238 + +R+ GKG K R+VPL +A+ Y +RG+PL Sbjct: 227 AIVRLFGKGSKERLVPLGSYGARALEAYL------------------VRGRPLLAAKGKG 268 Query: 239 NPGVF-----QRYIRQ--------LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285 P +F R RQ + + HTLRHSFATHLL G D+R +Q Sbjct: 269 TPALFLNARGGRISRQSAWTILKVAAEKANITRDVSPHTLRHSFATHLLEGGADVRVVQE 328 Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 +LGH ++TTQ+YT V + D + E+Y HP Sbjct: 329 LLGHASVTTTQVYTLVTA----DTLREVYAAAHP 358 >gi|325285449|ref|YP_004261239.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489] gi|324320903|gb|ADY28368.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489] Length = 296 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 79/303 (26%), Positives = 147/303 (48%), Gaps = 16/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + ++ L +E+ S T+ +Y+ D +F F + + +I + Y +R +I Sbjct: 4 EAFVSYLSLEKKYSTHTVTAYKKDISEFTEFCGVNYQ----LTSIDDVPYAFVRNWIVVL 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--SLPRALNEKQALT 136 +++I +RS+ R ++ +K++ K+L+K + + + LK S +P + E Sbjct: 60 VSKEISNRSINRKIASLKAYYKFLQKIGRVVVNPLAKHKALKISKKIEIPFSFEE----- 114 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 V+ L E + R+ I+ LLY G+R E ++L +N+ T+++ GK +K Sbjct: 115 -VEAALNEVDFEAGFEGERDRLIIGLLYATGVRRIELVNLKLKNVDVKAKTIKVLGKRNK 173 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 R+VPL P V + Y + +N + F G + + R I + + Sbjct: 174 ERVVPLAPFVCPWVYSYLENREALPVINDEAYFFLLKSGDKVYESLVYRIINRYFSKVSS 233 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FATHLL+ G DL S++ +LGH L++TQ+YT+ N + +++ Sbjct: 234 KQKNSPHILRHTFATHLLNEGADLNSVKELLGHSSLASTQVYTH----NSIAELKKVHLA 289 Query: 317 THP 319 HP Sbjct: 290 AHP 292 >gi|148272560|ref|YP_001222121.1| integrase/recombinase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830490|emb|CAN01425.1| integrase/recombinase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 298 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 80/297 (26%), Positives = 138/297 (46%), Gaps = 11/297 (3%) Query: 24 NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83 +++ ERG + T+++Y D R LA + + + T L +R ++ + ++ Sbjct: 10 SMDRERGSAAHTVRAYSADLRD----LAAHAGRQ-GVTTSAALDLEVLRDWLWRGSQARL 64 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 +L R + ++ F +L + + ++ + + LPR L +Q ++ + L Sbjct: 65 APATLARRSAAVRGFGAWLLRTGRVEADPAVRLKAPRAGSHLPRVLAREQ-MSALLARLA 123 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 + E R+ A++ LLY LR+SE L ++ + T+R+ GKGD+ R+VP Sbjct: 124 ARAAEDDPAALRDLAVIELLYASALRVSELTGLELGDVDASRLTVRVVGKGDRERVVPFG 183 Query: 204 PSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 +A+ Y P ++ LF G RG L + L + Sbjct: 184 VPAAEALDAYVARGRPGLVSPRTGTALFLGARGGRLGSRAVYGLVASLLADIPGSGPQGP 243 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRH+ ATHLL G DLR++Q +LGH L TTQIYT+V+ + + Y+ HP Sbjct: 244 HALRHTAATHLLDGGADLRTVQEMLGHASLGTTQIYTHVSIER----LQRSYEGAHP 296 >gi|172061520|ref|YP_001809172.1| site-specific tyrosine recombinase XerD [Burkholderia ambifaria MC40-6] gi|171994037|gb|ACB64956.1| tyrosine recombinase XerD [Burkholderia ambifaria MC40-6] Length = 322 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 83/279 (29%), Positives = 131/279 (46%), Gaps = 15/279 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E GL++ TL +Y D F +LA + + + +I+ R K Sbjct: 41 LWLEHGLARNTLDAYRRDLVLFSQWLAAMHDAPLD-----SADEAMLIGYIAARSDGKA- 94 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S R LS + + + + L + + K++ P L+E Q L+ + Sbjct: 95 -TSSNRRLSVFRRYYGWAVREHRANADPTLRITSAKQAARFPSTLSEAQVEALLGAPDVG 153 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 T + R+ +L L+Y GLR+SE ++L + ++ +R+ GKG K R+VP Sbjct: 154 TP-----LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPF-G 207 Query: 205 SVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 V +E Y D P L LF RG + F I++ + + + Sbjct: 208 EVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSP 267 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V Sbjct: 268 HTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHV 306 >gi|37528455|ref|NP_931800.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787893|emb|CAE17010.1| integrase/recombinase [Photorhabdus luminescens subsp. laumondii TTO1] Length = 303 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 91/310 (29%), Positives = 157/310 (50%), Gaps = 23/310 (7%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +LL+ + +L+ L +ER LS +T+ Y R+ L LA E + + + L ++R Sbjct: 7 QLLEPIEAFLRYLRVERRLSPVTITHY----RRHLATLAEMVLE-MGVSQWQDLDPAKVR 61 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 +++ R + +L LS ++SFL + + I E ++ N K+ S P Sbjct: 62 MLVTRSRRAGLQSANLALRLSSLRSFLDW---QVIQGEISV----NPSKTVSTPGTKRHL 114 Query: 133 QALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 VD V LL+ + + R+ +L ++YG GLR+SE + L Q++ + + + Sbjct: 115 PKNIDVDEVNQLLNINFNDP-LSVRDRTMLEVMYGAGLRLSELVGLDCQHLDLESGEVWV 173 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 GKG K R VPL + + + + + F+ N +F RG+ ++ Q+ Q Sbjct: 174 SGKGSKERKVPLGHTAVEWLNRWLAMRELFEPEDN---AVFVSKRGRRISTRNVQKRFAQ 230 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 G+ H LRHSFATH+L + GDLR++Q +LGH LS+TQIYT+++ ++ Sbjct: 231 WGIRQGMSSHIHPHKLRHSFATHILESSGDLRAVQELLGHASLSSTQIYTHLDFQH---- 286 Query: 310 MMEIYDQTHP 319 + ++YD HP Sbjct: 287 LTKVYDVAHP 296 >gi|254440057|ref|ZP_05053551.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] gi|198255503|gb|EDY79817.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] Length = 315 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 112/222 (50%), Gaps = 17/222 (7%) Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 R LS IK ++ + ++ + + + LP+ L+ + + LL+ + + Sbjct: 76 RRLSAIKQLFRFAFEEGWRVDNPAIQVSGPGRDKRLPKTLSHDEV-----DALLNAARDA 130 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 K R + ++ LLY G+R++E +SL D L ++GKGDK R+VPL P R A Sbjct: 131 KKEPLRTTCLMELLYATGMRVTELVSLPVSAARGDPRMLLVRGKGDKERMVPLSPPARAA 190 Query: 210 I---LEYYDLCPFDLNLNIQLP----LF--RGIRGKPLNPGVFQRYIRQLRRYLGLP-LS 259 L+ D D P LF RG G L F I+ L G+P Sbjct: 191 TAIWLKTRDRTE-DEAFKDGTPRSKFLFPSRGKLGH-LTRQSFFNLIKDLALAGGVPPFK 248 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T HT+RH+FATHLL G DLRSIQ++LGH ++TT+IYT+V Sbjct: 249 ATPHTMRHAFATHLLEGGADLRSIQTLLGHADVATTEIYTHV 290 >gi|89901430|ref|YP_523901.1| tyrosine recombinase XerD [Rhodoferax ferrireducens T118] gi|89346167|gb|ABD70370.1| tyrosine recombinase XerD subunit [Rhodoferax ferrireducens T118] Length = 306 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 86/306 (28%), Positives = 146/306 (47%), Gaps = 25/306 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 ++ L +E GLSK TL +Y D + +L + K T+ ++ + + + + Sbjct: 17 FIDALWLEEGLSKNTLAAYRRDLTLYGAWLQ--PQHKALPATLEH----DLNGYFAAQHS 70 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + R L+ K + ++ + + + L ++ K++ +P+ L+E Q Sbjct: 71 ATKASTA-NRRLTVFKRYFRWALREHLISADPTLKLQAAKQALRVPKTLSEFQV-----E 124 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LL E + R+ +L L+Y GLR+SE ++L N+ + LR+ GKG+K R+V Sbjct: 125 ALLAAPDEQTPLGVRDRTMLELMYASGLRVSELVTLKVFNVSLSDNVLRVFGKGNKERLV 184 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPG------VFQRYIRQLRRY 253 P I Y +L Q LF RG PG +F +++ Sbjct: 185 PFGEVASLWIKRYLAQARPELLAGKQTEDLFVTHRGA--TPGTAMSRVMFWMIVKKYALS 242 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ + HTLRH+FATHLL++G DLR++Q +LGH +STT IYT+V + + + Sbjct: 243 AGITAPLSPHTLRHAFATHLLNHGVDLRAVQMLLGHVDISTTTIYTHVARER----LKVL 298 Query: 314 YDQTHP 319 + Q HP Sbjct: 299 HAQHHP 304 >gi|297559217|ref|YP_003678191.1| integrase family protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843665|gb|ADH65685.1| integrase family protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 289 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 87/309 (28%), Positives = 144/309 (46%), Gaps = 32/309 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++ +L E G S T++ Y D R L L EE+ +++R L +R ++S+ Sbjct: 3 ESFAAHLSGELGRSPHTVRGYLADLRSLLAHL----EERG--RSVRDLDVDLVRGWLSRA 56 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R ++ R ++ +++F ++L + + + + + SLP L+E+QA Sbjct: 57 RDAGASRATVARRVAAVRAFTRFLHREGVLAADPGPRLASPAQQRSLPTVLDERQA---- 112 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L E R A++ LY G+R++E +L ++ ++ T+R+ GKG K R Sbjct: 113 -AAALAGETEGTPTGLRRRAVVETLYATGVRVAELCALDLADVDRERDTVRVLGKGAKER 171 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR------ 251 VP+ A+ + P LF G RG L +RQ R Sbjct: 172 TVPVGGPALDALDAWLSGGRPEMAGATSGSALFLGARGGRLG-------VRQAREDVHAH 224 Query: 252 -RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 R +G + H LRHS ATHLL+ G DLRS+Q LGH +TQIYT+V+ + + Sbjct: 225 LRAVGA--DSAPHGLRHSAATHLLNGGADLRSVQEFLGHASPRSTQIYTHVSVER----L 278 Query: 311 MEIYDQTHP 319 + Y + HP Sbjct: 279 RDTYRRAHP 287 >gi|162147966|ref|YP_001602427.1| tyrosine recombinase xerD [Gluconacetobacter diazotrophicus PAl 5] gi|209542583|ref|YP_002274812.1| integrase family protein [Gluconacetobacter diazotrophicus PAl 5] gi|161786543|emb|CAP56125.1| putative tyrosine recombinase xerD [Gluconacetobacter diazotrophicus PAl 5] gi|209530260|gb|ACI50197.1| integrase family protein [Gluconacetobacter diazotrophicus PAl 5] Length = 304 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 86/292 (29%), Positives = 137/292 (46%), Gaps = 26/292 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ L ERG + TL++Y D F + +++ +R ++ Sbjct: 6 EAFLEMLAAERGAAANTLKAYGRDLDDF------AAHARQAGRSLHDADSALLRDYMGSL 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + R+ R LS +K F +L + + ++ + + +LPR L E + L+ Sbjct: 60 ARAGLSPRTQARRLSCLKQFHLFLAREGVRQDNPAELLDTPRLPATLPRFLTEDEVDALL 119 Query: 139 DNVLL--HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 + +W+ AR A L +LY GLRISE L+L + + D L ++GKG + Sbjct: 120 AACVPPPDGGAARRWLVAR--AALEMLYASGLRISELLALPRRGLGRDAQMLMVRGKGGR 177 Query: 197 IRIVPL--LPSVRKAILEYYD---LCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQL 250 R+VPL L +D P+ LF G +PL F R + + Sbjct: 178 ERLVPLSAAARAAAEALIAHDGPRRSPY---------LFPGRAPDRPLTRQGFDRILHDV 228 Query: 251 RRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 GL P + H LRHSFATH+L+ G DLR++Q +LGH ++TTQIYT+V Sbjct: 229 ALRAGLDPARLSPHVLRHSFATHMLARGADLRALQVLLGHADIATTQIYTHV 280 >gi|118617318|ref|YP_905650.1| site-specific tyrosine recombinase XerD [Mycobacterium ulcerans Agy99] gi|118569428|gb|ABL04179.1| integrase/recombinase, XerD [Mycobacterium ulcerans Agy99] Length = 313 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 88/313 (28%), Positives = 142/313 (45%), Gaps = 19/313 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF-ISK 77 Q +L +L IERG++ TL SY D R++ L E I + ++ ++ F ++ Sbjct: 11 QGYLDHLAIERGVAANTLSSYRRDLRRYSKHL-----EDRGITDLAKVGEDDVSEFLVAL 65 Query: 78 RRTQK------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131 RR + S R+L ++ ++ + +R LP++L Sbjct: 66 RRGDPESGVLGLSAVSAARALIAVRGLHRFAAAEGLAALDVARAVRPPTPGRRLPKSLTI 125 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 + L L++ + + RN A+L LLY G RISEA+ L +I T+ +Q Sbjct: 126 DEVLALLEGAGGDNPADGP-LTLRNRALLELLYSTGSRISEAVGLDVDDIDTQARTVLLQ 184 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQ 249 GKG K R+VP+ +A+ Y +L + +F RG L+ + ++ Sbjct: 185 GKGGKQRLVPVGRPAVQALDAYLVRGRPELARRGRGTPAIFLNARGGRLSRQSAWQVLQD 244 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 + + H LRHSFATHLL G D+R +Q +LGH ++TTQIYT V Sbjct: 245 AAERADITSGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHA---- 300 Query: 310 MMEIYDQTHPSIT 322 + E++ HP T Sbjct: 301 LREVWAGAHPRAT 313 >gi|317132368|ref|YP_004091682.1| integrase family protein [Ethanoligenens harbinense YUAN-3] gi|315470347|gb|ADU26951.1| integrase family protein [Ethanoligenens harbinense YUAN-3] Length = 294 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 84/296 (28%), Positives = 142/296 (47%), Gaps = 16/296 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L ++ +S TLQSY+ D +QF+ +L E ++ E+ ++ R + Sbjct: 12 LRDQKSVSASTLQSYQRDLKQFVQYLQQRGNEDPA-----DVTAAELEMYLDVLRGKGRS 66 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 + ++ R + ++ F +YL I +E+ L + + LP L + ++L Sbjct: 67 EATISRFTASVRGFFQYLLLEGIISENPALLLHVERGKRCLPDILTSGEV-----DLLFA 121 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + R+ A+L LLY G+R+SE ++L +I TL +G +K R +P+ Sbjct: 122 QPVCNDFKGYRDKAMLELLYATGIRVSELIALDVGDINLGLCTLFCRGP-EKNRSIPIYN 180 Query: 205 SVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 ++I Y D L L+ + LF G+ L+ F + ++ G+ T H Sbjct: 181 EAVQSISLYLDNARSTLRMLHGEKALFVNAGGRRLSRQGFWKIVKSYAGQAGIQKRITPH 240 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 TLRHSFA HLL NG DL+SIQ +LGH +S+TQIY + + +Y++ HP Sbjct: 241 TLRHSFAAHLLENGADLKSIQEMLGHSDISSTQIYEQIVQ----NRCRLVYNKCHP 292 >gi|149191484|ref|ZP_01869733.1| site-specific tyrosine recombinase XerC [Vibrio shilonii AK1] gi|148834672|gb|EDL51660.1| site-specific tyrosine recombinase XerC [Vibrio shilonii AK1] Length = 313 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 85/312 (27%), Positives = 154/312 (49%), Gaps = 16/312 (5%) Query: 8 EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67 +++ L K + + + L E+GLS T ++Y RQ L + + E + I Q+ Sbjct: 4 QVLPSGLQKPLERFYEYLRSEKGLSLHTQRNY----RQQLETMGMHLHE-MGIGAWTQVD 58 Query: 68 YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127 +R K + + S+ LS ++SF +L R T + + +K LP+ Sbjct: 59 AGWVRQLAGKGMREGMKASSIATRLSSLRSFFDFLILRGELTANPAKGVSAPRKQRPLPK 118 Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 L+ + N LL E + R+ A++ ++YG GLR++E +S+ +++ Sbjct: 119 NLDVDEV-----NQLLEVD-EDDPLAVRDRAMMEMMYGAGLRLAEMVSIDVKHLNLSSGE 172 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 LR+ GKG+K R VP + ++ + +L ++ LF G ++ Q+ + Sbjct: 173 LRVIGKGNKERKVPFSGYATEWAKKWLKVRG-ELAKPGEVALFVSKLGTRISHRSVQKRM 231 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 + + L + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ ++ Sbjct: 232 AEWGQKQSLASHVSPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQH-- 289 Query: 308 DWMMEIYDQTHP 319 + + YDQ HP Sbjct: 290 --LAQAYDQAHP 299 >gi|315186399|gb|EFU20159.1| integrase family protein [Spirochaeta thermophila DSM 6578] Length = 299 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 87/294 (29%), Positives = 145/294 (49%), Gaps = 35/294 (11%) Query: 24 NLEIERGLSKLTLQSYE--CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 +L E G S+LT ++Y C+ F A+ + ++T+ + + E FI R + Sbjct: 15 HLVAELGRSRLTEETYLPLCER-----FCAWLECRGLEVETVSRRTCEE---FIVDERGE 66 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 R++ + +S ++SF ++L + ++ + M + S +LPR L E++ L++ V Sbjct: 67 GKETRTIAKEMSALRSFFRFLVLEGVRPDNPLEEMDAPRISRTLPRVLEEEEVEILLEAV 126 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 T R+ +L +LY CGLR+SEA L Q+I + ++++GKG+K R+VP Sbjct: 127 -----DTTPPEGMRDRCLLEVLYSCGLRVSEACGLDLQDIFLSEGFVKVRGKGEKERLVP 181 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF-QRYIRQLRR---YLGLP 257 + Y L+ P+ R VF R+ R+L R ++ L Sbjct: 182 FGKEAGHWMRRY---------LSEARPVLAARRPGSREQAVFLNRWGRRLSRKGAWIRLK 232 Query: 258 LSTTA-------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 A HT RH+ ATHLL G +LR +Q LGH +STTQIYT+V+++ Sbjct: 233 RLVAASGVDAKLHTFRHTCATHLLHGGANLREVQEFLGHADISTTQIYTHVDAR 286 >gi|315121780|ref|YP_004062269.1| site-specific tyrosine recombinase XerD [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495182|gb|ADR51781.1| site-specific tyrosine recombinase XerD [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 318 Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 77/285 (27%), Positives = 145/285 (50%), Gaps = 10/285 (3%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ + ER S TL SY+ D + +FL + + S + A+++ Sbjct: 18 FLEMMSSERAASVNTLTSYKSDLEEVQLFLD------DDDLLLSKASSDNLIAYLNHLSQ 71 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 +K+ S +R +S I+ F +L + ++ ++ KK+++LP+ L++ L+ Sbjct: 72 RKLKASSQRRKISAIRQFYNFLCCEGLRKDNPSETLQFPKKNHTLPKTLHKNAIADLLKQ 131 Query: 141 VLLHTSHET--KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + + + +W R ++ LLY G+R+SE ++L+ + ++ + I+GKG++ R Sbjct: 132 AKIESEDPSPGQWKRIRMFLLIELLYSTGMRVSELVTLSSHTLNLEERIMIIKGKGNRER 191 Query: 199 IVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 V PS A+ Y +C ++ N + L+ VF R +++L + Sbjct: 192 FVIFSPSSLCALQMYKKMCSTMEMTKNSPWLFPSSTKTGHLSRQVFARDLKELASRASIQ 251 Query: 258 L-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + + H +RH+FA+HLL G DLR+IQ +LGH +STTQIYT++ Sbjct: 252 TKNISPHIIRHAFASHLLEGGADLRTIQILLGHIDISTTQIYTHL 296 >gi|238028460|ref|YP_002912691.1| site-specific tyrosine recombinase XerD [Burkholderia glumae BGR1] gi|237877654|gb|ACR29987.1| Tyrosine recombinase XerD [Burkholderia glumae BGR1] Length = 341 Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 86/279 (30%), Positives = 132/279 (47%), Gaps = 15/279 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E GLS+ TL +Y D F +LA T +I + + T +I+ R K Sbjct: 60 LWLEHGLSQNTLDAYRRDLTLFAQWLA--TVHGASIDAVDEAMLT---GYIAARSDGKA- 113 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S R LS + + + + L + + K+ P L+E Q L+ + Sbjct: 114 -TSSNRRLSVFRRYYGWALREHRAALDPTLRLLSAKQPARFPATLSEAQVEALLAAPEVG 172 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 T+ + R+ +L L+Y GLR+SE + L + + +R+ GKG K R+VP Sbjct: 173 TA-----LGLRDRTMLELMYASGLRVSELVMLKTVEVGLNDGVVRVMGKGSKERLVPF-G 226 Query: 205 SVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 V +E Y + P L LF RG+ + F I++ + + Sbjct: 227 EVAHGWIERYLREARPALLGARTSDALFVTARGEGMTRQQFWNIIKRHAMRAEIRAHLSP 286 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V Sbjct: 287 HTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHV 325 >gi|261855921|ref|YP_003263204.1| integrase family protein [Halothiobacillus neapolitanus c2] gi|261836390|gb|ACX96157.1| integrase family protein [Halothiobacillus neapolitanus c2] Length = 329 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 70/255 (27%), Positives = 127/255 (49%), Gaps = 9/255 (3%) Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 Q+ +R +++ R + +RS+ R S + L+Y +K I ++ +++ K + Sbjct: 59 QIDDRRLRGYLAHCRESGLDNRSIARKSSATRWLLRYWQKIHIACPASPDALKSPKAAKK 118 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 LP A + L+D ++ + R+ + L+Y GLR++E + L +I Sbjct: 119 LPDAPAIETMNQLLDQPMVEDE-----LLIRDRCMFELIYSSGLRVAELVRLDVHDIDRS 173 Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 + R+ GK +K R+VP+ + + + L + LF RG+ L Q Sbjct: 174 EGIARVTGKREKTRLVPVGGKALDRVALWLPIRKTLLKDTTEPALFLNRRGQRLTIRSVQ 233 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + +L + L + H LRH+FATH+L + GDLR++Q +LGH LSTTQIYT+++ + Sbjct: 234 MRLNRLAQQTHLGQTLHPHQLRHAFATHVLESSGDLRAVQEMLGHESLSTTQIYTHLDFQ 293 Query: 305 NGGDWMMEIYDQTHP 319 + ++Y+ HP Sbjct: 294 R----LAQVYESAHP 304 >gi|219871693|ref|YP_002476068.1| putative site-specific tyrosine recombinase XerC [Haemophilus parasuis SH0165] gi|219691897|gb|ACL33120.1| possible site-specific tyrosine recombinase XerC [Haemophilus parasuis SH0165] Length = 261 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 78/257 (30%), Positives = 134/257 (52%), Gaps = 14/257 (5%) Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 ++L + +R +S+ Q + +S+ L ++ FL +L K+ + L +++ K + Sbjct: 11 QELDASTVRWILSQSHKQGLSAKSIGLRLVALRQFLAFLVKQGELKVNPTLGIKSPKANK 70 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 LP+ ++ +Q + +L S+E +D R+ A++ L+Y GLR+SE L ++ Sbjct: 71 HLPKNIDAEQ----IGQLLNIDSNEP--LDLRDVAMMELMYSSGLRLSELQGLDLGDMDL 124 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGV 242 +R+ GKG+K RIVP+ AI ++ + F N +F RG L+ Sbjct: 125 PNREVRLLGKGNKERIVPIGSKALDAIEQWLAVRGQFHPKDN---AVFLNQRGGRLSHRS 181 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 Q +++ + L H LRHSFATH+L DLR++Q +LGH LSTTQIYT+++ Sbjct: 182 IQLAMKKWGQKQALDTHLHPHKLRHSFATHMLEASQDLRAVQELLGHSSLSTTQIYTHLD 241 Query: 303 SKNGGDWMMEIYDQTHP 319 + ++ IYD HP Sbjct: 242 FQ----YLARIYDLAHP 254 >gi|227114723|ref|ZP_03828379.1| site-specific tyrosine recombinase XerC [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 311 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 81/302 (26%), Positives = 145/302 (48%), Gaps = 25/302 (8%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L+ L++ER LS LT SY RQ + + + R L + +R+ +S+ + Sbjct: 24 LRYLKVERQLSPLTQTSY---LRQLSAVITILSAAGVA--DWRNLDASGVRSVVSRSKRD 78 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 + SL LS ++SFL ++ R + + + + LP+ ++ + N Sbjct: 79 GLHSSSLALRLSALRSFLDWMVSRGVLVANPAKGVSAPRAGRPLPKNMDVDET-----NR 133 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 LL + + R+ +L ++YG GLR++E + + Q+I + + GKG K R +P Sbjct: 134 LLEIDLDDP-LAVRDRTMLEVMYGAGLRLAELVGMDYQHIDLASGEVWVMGKGSKERKLP 192 Query: 202 LLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 + + + + L P D + F +G+ ++ Q+ + G+ Sbjct: 193 IGKTAVTWLERWMALRELFGPQDDAV------FISNQGRRISMRNVQKRFAEWGIKQGIN 246 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 H LRHSFATH+L + GDLR++Q +LGH L+TTQIYT+++ ++ + +YD Sbjct: 247 SHVHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----LASVYDAA 302 Query: 318 HP 319 HP Sbjct: 303 HP 304 >gi|154508823|ref|ZP_02044465.1| hypothetical protein ACTODO_01333 [Actinomyces odontolyticus ATCC 17982] gi|153798457|gb|EDN80877.1| hypothetical protein ACTODO_01333 [Actinomyces odontolyticus ATCC 17982] Length = 315 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 91/316 (28%), Positives = 146/316 (46%), Gaps = 22/316 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLSYTEIRAFIS 76 ++W+ L +E+G S T+ +Y D ++ + + K+ ++ I R + +R Sbjct: 9 RDWVDYLRVEKGASAHTVSNYRRDVARYAFDM--KSRGKVNVEDISPRDIEDYTMRLASG 66 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + S+ R+ + I+ KY + ++ LP+AL+ Sbjct: 67 RVTGTPAAASSVARASAAIRGLHKYALTEGAVGTDAAAQLHAPRQGRHLPKALS------ 120 Query: 137 LVDNV--LLHTSH-ETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MD-DQSTLRIQ 191 VD V LL +H + I R++A+L LLY G R+SEA+SL+ ++ +D D +R+ Sbjct: 121 -VDEVGRLLDAAHADDSPIGLRDAALLELLYATGARVSEAVSLSADDLDLDGDVPVVRLF 179 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQ 249 GKG K RIVP+ A+ Y L + F RG L+ IR+ Sbjct: 180 GKGRKERIVPVGSFAVDALYAYRVRARPALAARGRGSTAFFLNSRGGALSRQSAWTAIRR 239 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 L + HTLRHSFATHLL G +R +Q +LGH ++TTQIYT V + Sbjct: 240 AAEAAQLGERVSPHTLRHSFATHLLEGGASVREVQELLGHASVATTQIYTQVTAA----V 295 Query: 310 MMEIYDQTHPSITQKD 325 + E++ +HP D Sbjct: 296 LREVFTLSHPRARGTD 311 >gi|225021106|ref|ZP_03710298.1| hypothetical protein CORMATOL_01118 [Corynebacterium matruchotii ATCC 33806] gi|224946106|gb|EEG27315.1| hypothetical protein CORMATOL_01118 [Corynebacterium matruchotii ATCC 33806] Length = 331 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 70/204 (34%), Positives = 112/204 (54%), Gaps = 14/204 (6%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 K SLP + A TL+ V + E +++ R++A+L LLY G+R+SE + Sbjct: 136 KSGRSLPTVVTPTAAETLM--VSSQATTEPEYL--RDTAMLELLYATGIRVSELCGIDLA 191 Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRG 235 ++ ++T+++ GKG+K R+VP A+ + D L LN + P LF G RG Sbjct: 192 DVNYSRNTVKVTGKGNKQRVVPFGNPAASALKAWRDHGRPHL-LNPKKPAHNALFLGARG 250 Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 ++P + + + + + LG+ H+LRHS ATH+L G DLR +Q +LGH L TT Sbjct: 251 GRIDPRMVRTVVARAGKQLGVD-GLGPHSLRHSAATHMLDGGADLRVVQELLGHSSLQTT 309 Query: 296 QIYTNVNSKNGGDWMMEIYDQTHP 319 QIYT+V++ + + Y+Q HP Sbjct: 310 QIYTHVSTTR----LKQAYNQAHP 329 >gi|325104990|ref|YP_004274644.1| integrase family protein [Pedobacter saltans DSM 12145] gi|324973838|gb|ADY52822.1| integrase family protein [Pedobacter saltans DSM 12145] Length = 293 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 80/308 (25%), Positives = 153/308 (49%), Gaps = 27/308 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + + E+ S T+ SY+ D Q+ FL+ + I ++ ++R ++ Sbjct: 4 ERFFNYISFEKKYSAHTVLSYQTDINQYQDFLSVIEAD------ILSATHRDVRNWVVSL 57 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + R++ R +S +K+ +L + ++ + + + K + +LP L ++ L+ Sbjct: 58 MDDQKSSRTVNRKISALKTLYSFLLREELIEVNPMQKVLAPKIAKTLPVFLETEKLNALL 117 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D E + R+ IL L+G G+R+SE L L +++ T+++ GKG+K R Sbjct: 118 D---YEGIFEEGFEGKRDKLILEFLFGTGVRLSELLGLREKDVDFGNKTVKVLGKGNKER 174 Query: 199 IVP----LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 I+P L+ S+R +L+ ++ N + + +G++ P + R ++RYL Sbjct: 175 IIPMSESLICSIRDYLLKKKSGVIYN-NSDALIVTNKGLQAYP------EFIYRTVKRYL 227 Query: 255 GLPLST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 + S + H LRH+FAT LL+ G D+ +I+ +LGH L+ TQ+YT+ N + + Sbjct: 228 SIISSKEKKSPHVLRHTFATALLNAGADINAIKELLGHASLAATQVYTH----NSIERIK 283 Query: 312 EIYDQTHP 319 IY Q HP Sbjct: 284 TIYKQAHP 291 >gi|188532374|ref|YP_001906171.1| site-specific tyrosine recombinase XerC [Erwinia tasmaniensis Et1/99] gi|188027416|emb|CAO95263.1| Tyrosine recombinase XerC [Erwinia tasmaniensis Et1/99] Length = 302 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 85/307 (27%), Positives = 148/307 (48%), Gaps = 19/307 (6%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 LL + +L+ L++ER LS LT +Y RQ + E K+ +L +R+ Sbjct: 7 LLAAVEGFLRFLKVERQLSPLTQINYR---RQLSALIVLLDELKVVDWA--RLDAALVRS 61 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 ++ + SL LS ++SFL +L + + + + + LP+ ++ + Sbjct: 62 LAARSTRSGLKPASLALRLSALRSFLDWLMSQGMIKANPAKGVATPRAGRHLPKNIDVDE 121 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 N LL + R+ A+L ++YG GLR+SE + + ++ + + GK Sbjct: 122 V-----NRLLEIDLNDP-LAVRDRAMLEVMYGAGLRLSELVGIDLGHLDLASGEVWVVGK 175 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 G K R +P+ + I + ++ FD N LF +GK ++ Q+ + Sbjct: 176 GSKERRLPMGRTAVHWIENWLEMRELFDPEDN---ALFLSNKGKRISTRNVQKRFAEWGV 232 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 G+ H LRHSFATH+L + GDLR++Q +LGH L+TTQIYT+++ ++ + Sbjct: 233 KQGISSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----LAS 288 Query: 313 IYDQTHP 319 +YD HP Sbjct: 289 VYDAAHP 295 >gi|167625815|ref|YP_001676109.1| tyrosine recombinase XerC [Shewanella halifaxensis HAW-EB4] gi|167355837|gb|ABZ78450.1| tyrosine recombinase XerC [Shewanella halifaxensis HAW-EB4] Length = 303 Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 90/324 (27%), Positives = 158/324 (48%), Gaps = 49/324 (15%) Query: 13 ELLKERQNWLQNLE----IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS- 67 E L + WL + E ER +S T+++Y + ++ EK+ +T LS Sbjct: 4 EALSDNSVWLSSFERYLRTERQVSAYTVRNYLFELKRV---------EKLFSETESWLSQ 54 Query: 68 -YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126 + ++A ++K + + RSL +LS +K F ++L + + + +++ K+ LP Sbjct: 55 QHDSLQAILAKLHRKGLSPRSLSLTLSSLKQFYEFLLREQQLKINPAISLTAPKQGKPLP 114 Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDA------RNSAILYLLYGCGLRISEALSLTPQN 180 + ++ L+D IDA R+ AI+ L Y GLR+ E +L + Sbjct: 115 KNMDVDSVSHLLD------------IDANDPLSFRDKAIMELFYSSGLRLGELAALNAAD 162 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRG 235 I ++ +++ GKG K RIVP+ AI ++ ++ C D LF +G Sbjct: 163 IQFSEAQVKVLGKGSKERIVPIGKLALAAITQWLEIKRDIACEGD-------ALFVTAKG 215 Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 K L Q + + + + + H LRHSFATH+L + DLR++Q +LGH LSTT Sbjct: 216 KRLAHRSIQARLAKWGQEQAIGMKVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTT 275 Query: 296 QIYTNVNSKNGGDWMMEIYDQTHP 319 Q+YT+++ ++ + ++YD HP Sbjct: 276 QVYTSLDFQH----LAKVYDGAHP 295 >gi|296115017|ref|ZP_06833660.1| integrase/recombinase XerD [Gluconacetobacter hansenii ATCC 23769] gi|295978435|gb|EFG85170.1| integrase/recombinase XerD [Gluconacetobacter hansenii ATCC 23769] Length = 304 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 98/308 (31%), Positives = 148/308 (48%), Gaps = 28/308 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ L ERG + TL++Y D LA + ++ Q S ++ A++S Sbjct: 9 FLEMLAAERGAALNTLKAYRRDLDDLGTALA------VEGASLPQASARQLGAYLSGLAQ 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYL--KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + R+ R LS ++ + +L + R+ +++L L +LPR L+E L+ Sbjct: 63 AGLSARTQARRLSCLRQYYLFLVREGRRPDNPASMLEAPRL--GATLPRFLSEGDVDALL 120 Query: 139 DNVLLHT---SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 + +HE + + +A L +LY GLRISE LSL + L ++GKG Sbjct: 121 AACVARADAGAHEVRRMLVARTA-LEILYASGLRISELLSLPRAALERTTGMLLVRGKGG 179 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV---FQRYIRQLRR 252 + R+VPL R A E L D L LF G PL F R + + Sbjct: 180 RERMVPLSSRARDAADE---LMRMDRPLRSMF-LFPGR--NPLRAMTRQGFDRILHDVAL 233 Query: 253 YLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 GL P + H LRHSFATHLLS+G DLR++Q +LGH ++TTQIYT+V ++ + Sbjct: 234 KAGLDPQRLSPHVLRHSFATHLLSHGADLRALQVLLGHADITTTQIYTHVLTER----LQ 289 Query: 312 EIYDQTHP 319 E HP Sbjct: 290 EALRHHHP 297 >gi|223938788|ref|ZP_03630676.1| integrase family protein [bacterium Ellin514] gi|223892486|gb|EEF58959.1| integrase family protein [bacterium Ellin514] Length = 306 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 84/313 (26%), Positives = 155/313 (49%), Gaps = 26/313 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++LQ L ERG S+ T ++Y +FL + +K+T +++ + AF+ Sbjct: 6 EDFLQYLRHERGQSEHTQKTYAALLGKFLNWAQI---QKLT--DWKEVELKHLTAFLMFE 60 Query: 79 R-----------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127 R +K+ S+ ++ +++F K+ + KI + ++ ++ LP+ Sbjct: 61 RERLVEVKEGQSPRKLSSESVYLEIAALRAFYKFAENEKILPLNIAESLSLPRRWKRLPK 120 Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 AL++ + L+ + T + A+L L Y GLR++E ++ + + + Sbjct: 121 ALSDLEITQLLTLEIPETPRTLG-----DQAVLELAYASGLRLAELRNIRMEQLHLEVGF 175 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 + + GKG+K R+VP+ +A+ Y + P + +F +RG P + Sbjct: 176 INVIGKGNKERVVPVGSKAVQALQRYLESGRPKLVTPRSPANVFLTMRGTPFAAVTLWKR 235 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 I+ + G+ + T H LRHSFATHLL +G DLR IQ +LGH +STT+IYT+V+ Sbjct: 236 IKDRVKRSGVARNVTPHMLRHSFATHLLEHGADLRVIQELLGHANISTTEIYTHVS---- 291 Query: 307 GDWMMEIYDQTHP 319 G + E++ + HP Sbjct: 292 GSRLREVHRKFHP 304 >gi|300115640|ref|YP_003762214.1| integrase family protein [Nitrosococcus watsoni C-113] gi|299541582|gb|ADJ29893.1| integrase family protein [Nitrosococcus watsonii C-113] Length = 310 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 87/308 (28%), Positives = 147/308 (47%), Gaps = 25/308 (8%) Query: 11 SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70 + + + R+++L +L +G S+ T +Y D L + EE + Q ++ + Sbjct: 5 AVDFWQARKDFLAHLHYAKGYSQGTCYAYNSD----LGIWGRWLEE--AGKDWCQATHAD 58 Query: 71 IRAFIS-KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 F++ + R + + R S + SF K+ K + I K+ +P L Sbjct: 59 TEKFVAWQMRERGAKAHIVARRSSCLGSFYKWAMKNALVESDPIYLADKPKRPYRIPVWL 118 Query: 130 N--EKQAL--------TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 E+QAL L +N+ T K + R + L+ GLRISEAL++ + Sbjct: 119 EKEEQQALQEATQRIDNLPENIFGRTQEHIKAVRRRYDVLFGLILNSGLRISEALAVKVR 178 Query: 180 NI--MDD-QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 ++ M+ ++RI GKG++ R+VPL + + + D + + P GK Sbjct: 179 DVRVMNGIAKSVRIIGKGNRERLVPLPEAFGQVFGAWLQGREGDDFVFAKAP-----GGK 233 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 P P + Y+R+L G+ T H LRH++AT LL +G +L IQ++LGH LSTTQ Sbjct: 234 PPGPHAARAYLRRLIERAGIDKPVTPHKLRHTYATRLLESGAELVDIQALLGHVDLSTTQ 293 Query: 297 IYTNVNSK 304 IYT+V+ + Sbjct: 294 IYTHVSEE 301 >gi|260592787|ref|ZP_05858245.1| tyrosine recombinase XerD [Prevotella veroralis F0319] gi|260535318|gb|EEX17935.1| tyrosine recombinase XerD [Prevotella veroralis F0319] Length = 292 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 80/311 (25%), Positives = 149/311 (47%), Gaps = 37/311 (11%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L++ER S T++ Y D ++F F + QLS+ + + I +R Sbjct: 5 FLDYLKLERNYSPATVKHYRDDLKEFERFFQGLDQ---------QLSWESVDSDIVRRWM 55 Query: 81 QKIGDR-----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 + + D+ S+ R LS ++SF +Y +R + + + ++ ++ LP+ L E + Sbjct: 56 EYMMDKGNAASSVNRRLSALRSFYRYALRRNLVVKDPVHGIQGPRRKRPLPQFLKESEMD 115 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L+D + S++ D I+ Y G+RISE + L +++ +++ GK D Sbjct: 116 QLLDERMWTDSYK----DVLARTIIVTFYETGVRISELIGLNDKDVDYINCEIKVTGKRD 171 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 K RI+P + K + Y + + + FR +GK + Q+R+ + Sbjct: 172 KQRIIPFGDELLKTLTAYQQQRDVETE-SESVAFFRTEKGKRVTD-------EQVRQMVK 223 Query: 256 LPLSTTA-------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 + LS + H LRH+FAT +L++ L S++ +LGH LSTT+IYT+ + Sbjct: 224 INLSKVSTLKKRSPHVLRHTFATAMLNHDAGLESVKELLGHESLSTTEIYTHTTFEQ--- 280 Query: 309 WMMEIYDQTHP 319 + ++Y+ HP Sbjct: 281 -LKKVYNNAHP 290 >gi|27375301|ref|NP_766830.1| site-specific integrase/recombinase [Bradyrhizobium japonicum USDA 110] gi|34222843|sp|Q89XW5|XERD_BRAJA RecName: Full=Tyrosine recombinase xerD gi|27348437|dbj|BAC45455.1| xerD [Bradyrhizobium japonicum USDA 110] Length = 318 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 92/302 (30%), Positives = 142/302 (47%), Gaps = 36/302 (11%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLA--FYTEEKITIQTIRQ-LSYTEIRAFISK 77 +L L E+G TL +Y D F FL ++ QT+R L+ + R F S Sbjct: 14 FLDMLAAEQGAGPNTLDAYRRDLTDFSEFLGRVGHSFADAETQTLRDYLADLDTRGFKST 73 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 S+ R LS ++ ++L +I + + K+ LP+ L+ + Sbjct: 74 ---------SVARRLSAMRHLYRFLLNERIRGDDPAAILSGPKRGRGLPKVLS----IAD 120 Query: 138 VDNVLLHTSHETKWIDARNS---------AILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 VD +L ++ DA S +L +LY GLR+SE ++L D + Sbjct: 121 VDRMLRRARELSEAEDASPSKRLRALRLYCLLEVLYATGLRVSELVALPRTAAKRDARMI 180 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQ-----LPLFRGIRGKPLNP 240 ++GKG+K R+VPL + R+A+ +Y + D + P F G G L Sbjct: 181 VVRGKGNKERLVPLNEASRQAMADYLAATEAAKSDKKTGVAASKWLFPSF-GESGH-LTR 238 Query: 241 GVFQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 F R +++L GL + H LRH+FA+HLL NG DLR +Q++LGH +STTQIYT Sbjct: 239 QHFARDLKELAVASGLQARLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYT 298 Query: 300 NV 301 +V Sbjct: 299 HV 300 >gi|238760177|ref|ZP_04621324.1| Tyrosine recombinase [Yersinia aldovae ATCC 35236] gi|238701613|gb|EEP94183.1| Tyrosine recombinase [Yersinia aldovae ATCC 35236] Length = 263 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 69/264 (26%), Positives = 133/264 (50%), Gaps = 12/264 (4%) Query: 56 EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115 E++ + + L ++R+ +S+ + + SL LS ++SFL ++ + + + Sbjct: 5 EQMGLAHWQTLDAAQVRSLVSRSKRAGLHASSLALRLSALRSFLDWMVSQGVLQANPARG 64 Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175 + + LP+ ++ + L+D L + R+ A+L ++YG GLR+SE + Sbjct: 65 VSTPRSGRHLPKNIDVDEVDKLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVG 118 Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235 + +++ + + GKG K R +P+ + K + + +L +L +F G Sbjct: 119 MNCKHVDLASGEVWVMGKGSKERKLPIGRTAVKWLAHWLEL--RELFEPQDDAIFLANTG 176 Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 K ++ Q+ + G+ H LRHSFATH+L + GDLR++Q +LGH L+TT Sbjct: 177 KRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTT 236 Query: 296 QIYTNVNSKNGGDWMMEIYDQTHP 319 QIYT+++ ++ + +YD HP Sbjct: 237 QIYTHLDFQH----LATVYDAAHP 256 >gi|227497530|ref|ZP_03927758.1| integrase/recombinase XerD [Actinomyces urogenitalis DSM 15434] gi|226832984|gb|EEH65367.1| integrase/recombinase XerD [Actinomyces urogenitalis DSM 15434] Length = 167 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 95/165 (57%), Gaps = 5/165 (3%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ A++ +LY G+R+SE +L ++ + T+R+ GKG+K R+VP +A+ ++ Sbjct: 6 RDQALVEMLYATGVRVSELCALDLADVDRGERTVRVLGKGNKERVVPYGTPAARALEGWW 65 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 L + LF G RG ++P ++ + +L G+P H LRHS ATH+L Sbjct: 66 QLRARLARPDSGQALFLGARGGRVDPRTVRQVVHRLAAEAGVP-DLGPHGLRHSAATHVL 124 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 S G DLRS+Q +LGH L+TTQ YT+V+++ + +Y+Q P Sbjct: 125 SGGADLRSVQELLGHSSLATTQRYTHVSAER----LRAVYEQAFP 165 >gi|313205824|ref|YP_004045001.1| integrase family protein [Riemerella anatipestifer DSM 15868] gi|312445140|gb|ADQ81495.1| integrase family protein [Riemerella anatipestifer DSM 15868] gi|315022781|gb|EFT35805.1| Probable integrase [Riemerella anatipestifer RA-YM] gi|325336737|gb|ADZ13011.1| Integrase, catalytic core, phage [Riemerella anatipestifer RA-GD] Length = 358 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 87/296 (29%), Positives = 144/296 (48%), Gaps = 35/296 (11%) Query: 11 SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70 +FEL +E +L++ +G S+ TL++Y + Q L L + ++++ + +R SY Sbjct: 85 AFELFQE------HLKL-KGYSRNTLRTYAVEFAQLLYVLKDFPVDELSEERLR--SY-- 133 Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 F+ K+ + + ++ IK + + RK ++ KK LP++LN Sbjct: 134 ---FLYCFENLKLSEAEINSRINAIKFYFEQALHRK----KMFFDIPRPKKKKQLPKSLN 186 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 +KQ L + + + ++ +L L YG GLR+SE ++L ++I + +RI Sbjct: 187 KKQILKIFEVT----------TNLKHRCMLQLCYGMGLRVSEIVNLKLEDICSETMRVRI 236 Query: 191 Q-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 + KG K R+VPL S+ + YY + LF G G + Q + Sbjct: 237 ENAKGKKDRMVPLPESILPELRAYYR------EYKPKKYLFEGQYGGMYSVRSVQSVFKT 290 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 R G+ + H LRHS+ATHLL G D+R IQ LGH + TTQIYT V S++ Sbjct: 291 AMRKAGINKTVGIHGLRHSYATHLLEMGTDIRYIQEFLGHNNIKTTQIYTQVTSEH 346 >gi|260767555|ref|ZP_05876491.1| tyrosine recombinase XerC [Vibrio furnissii CIP 102972] gi|260617455|gb|EEX42638.1| tyrosine recombinase XerC [Vibrio furnissii CIP 102972] gi|315178748|gb|ADT85662.1| site-specific tyrosine recombinase [Vibrio furnissii NCTC 11218] Length = 309 Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 80/303 (26%), Positives = 151/303 (49%), Gaps = 16/303 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L E+GLS T ++Y +Q L +A + + + +Q+ +R SK + Sbjct: 23 LRSEKGLSLHTQRNY----KQQLTTMAQHLNH-MGLNQWQQVDAGWVRQLASKGMRDGMK 77 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 SL LS ++SF +L R + + +K LP+ L+ + L++ Sbjct: 78 ASSLATRLSSLRSFFDFLILRGELNANPAKGVSAPRKKRPLPKNLDVDEMAQLLE----- 132 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 +E + R+ A++ L+YG GLR++E +++ +++ +R+ GKG+K R P Sbjct: 133 -VNEDDPLSIRDRAMMELMYGAGLRLAELVAINVRDVSLSAGEIRVIGKGNKERKAPFAG 191 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 ++ + ++ + L + + LF G ++ Q+ + + + + H Sbjct: 192 QAKEWVGKWLKVRSSLLKGD-EPALFISQLGARISHRNVQKRMAEWGHKQSVASHISPHK 250 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ ++ + E+YDQ HP +K Sbjct: 251 LRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQH----LAEVYDQAHPRAHKK 306 Query: 325 DKK 327 K+ Sbjct: 307 AKE 309 >gi|305681404|ref|ZP_07404211.1| site-specific tyrosine recombinase XerC [Corynebacterium matruchotii ATCC 14266] gi|305659609|gb|EFM49109.1| site-specific tyrosine recombinase XerC [Corynebacterium matruchotii ATCC 14266] Length = 331 Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 70/204 (34%), Positives = 111/204 (54%), Gaps = 14/204 (6%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 K SLP + A TL+ V + E +++ R++A+L LLY G+R+SE + Sbjct: 136 KSGRSLPTVVTPTAAETLM--VSSQATTEPEYL--RDTAMLELLYATGIRVSELCGIDLA 191 Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRG 235 ++ ++T+++ GKG+K R+VP A+ + D L LN + P LF G RG Sbjct: 192 DVNYSRNTVKVTGKGNKQRVVPFGDPAASALKAWRDHGRPHL-LNPKKPAHNALFLGARG 250 Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 ++P + + + + LG+ H+LRHS ATH+L G DLR +Q +LGH L TT Sbjct: 251 GRIDPRMVRTVVARAGEQLGVD-GLGPHSLRHSAATHMLDGGADLRVVQELLGHSSLQTT 309 Query: 296 QIYTNVNSKNGGDWMMEIYDQTHP 319 QIYT+V++ + + Y+Q HP Sbjct: 310 QIYTHVSTTR----LKQAYNQAHP 329 >gi|330466299|ref|YP_004404042.1| integrase family protein [Verrucosispora maris AB-18-032] gi|328809270|gb|AEB43442.1| integrase family protein [Verrucosispora maris AB-18-032] Length = 376 Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 61/166 (36%), Positives = 93/166 (56%), Gaps = 6/166 (3%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ +L LLYG G+R+SEA + +I + +R++GKG + R+VP ++A+ E+ Sbjct: 214 RDRVLLELLYGTGVRVSEACGIDVADIDHGRRVVRVRGKGGRERVVPYGSPAQRALDEWL 273 Query: 215 DLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 P + + L G+RG LNP ++ + + GLP H LRHS ATHL Sbjct: 274 RRGRPVLVVPGSRDALLLGVRGGRLNPTTARQIVGAYAQATGLP-RIGPHALRHSAATHL 332 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 L G DLR++Q +LGH L++TQ+YT+V+ D + Y Q HP Sbjct: 333 LEGGADLRAVQELLGHSSLASTQVYTHVSV----DRLRAAYRQAHP 374 >gi|328957573|ref|YP_004374959.1| tyrosine recombinase XerC [Carnobacterium sp. 17-4] gi|328673897|gb|AEB29943.1| tyrosine recombinase XerC [Carnobacterium sp. 17-4] Length = 191 Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 71/198 (35%), Positives = 102/198 (51%), Gaps = 12/198 (6%) Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 +P+ EK+ L + V +D RN AIL +LYG G+R+SE + ++I + Sbjct: 1 MPKFFYEKEMDALFEAV-----KGDGPLDFRNEAILEVLYGTGIRVSECSGIKLKDIDFE 55 Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPG 241 S L I+GKG+K R VP AI +Y + L + I LF G P+ Sbjct: 56 LSVLLIRGKGNKERYVPFGHYAAVAIRDYMEKSRTPLMTKHKRIHDFLFVNHHGDPITAT 115 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + + Q+ + L H LRHSFATHLL+NG D+R++Q +LGH LS+TQIY +V Sbjct: 116 GIEYVLNQVIKRSSLTSDIHPHMLRHSFATHLLNNGADMRTVQELLGHASLSSTQIYAHV 175 Query: 302 NSKNGGDWMMEIYDQTHP 319 D + + Y Q HP Sbjct: 176 TK----DLLQKNYRQFHP 189 >gi|261210165|ref|ZP_05924462.1| tyrosine recombinase XerC [Vibrio sp. RC341] gi|260840705|gb|EEX67254.1| tyrosine recombinase XerC [Vibrio sp. RC341] Length = 310 Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 79/302 (26%), Positives = 151/302 (50%), Gaps = 16/302 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L E+GLS T ++Y+ +LA ++ + QL +R + + + + Sbjct: 24 LHTEKGLSLYTQRNYKQQLETMARYLA-----QMGLANWSQLDAGWVRQLVVLGKRKGMK 78 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S+ LS ++SFL +L R + + +K LP+ L+ + L++ Sbjct: 79 ASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRPLPKNLDVDEMAQLLEVT--- 135 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + + R+ AI+ L+YG GLR++E +S+ ++I +R+ GKG+K R V Sbjct: 136 ---DDDPLSIRDRAIMELMYGSGLRLAELVSIDVKDINLRDGEIRVIGKGNKERKVWFAG 192 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 ++ + ++ L L + + LF G ++ Q+ + + + + + H Sbjct: 193 QAQEWVGKWLKLRS-QLADSGEPALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISPHK 251 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ ++ + ++YDQ HP +K Sbjct: 252 LRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQH----LAQVYDQAHPRARKK 307 Query: 325 DK 326 +K Sbjct: 308 NK 309 >gi|68171293|ref|ZP_00544693.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia chaffeensis str. Sapulpa] gi|88658163|ref|YP_506998.1| tyrosine recombinase XerD [Ehrlichia chaffeensis str. Arkansas] gi|67999274|gb|EAM85923.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia chaffeensis str. Sapulpa] gi|88599620|gb|ABD45089.1| tyrosine recombinase XerD [Ehrlichia chaffeensis str. Arkansas] Length = 309 Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 93/298 (31%), Positives = 152/298 (51%), Gaps = 27/298 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ + E+ +S T QSY D L+ L + + + T S E++ +I Sbjct: 10 FLEAIVAEKHVSHNTYQSYRTD----LLGLCKFIDRNDLLLT--DASIHELQDYIRFLYE 63 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + ++ R +S IK+ +L + I + + + K S SLP+ L+ ++ L+D Sbjct: 64 KGYKANTVSRKISAIKNLYGFLYRDNIIENDPTVYLDSPKLSRSLPKTLSYEEVNILLDV 123 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQST----LRIQGK 193 L S + + I+A I+ +LY G+RISE + L + + +DD T ++IQGK Sbjct: 124 AALDVSPDGRRINA----IVNILYSSGIRISELVYLKFREVREALDDGDTEICHMKIQGK 179 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLR 251 K RI+ L S +I +Y ++ + + ++ LF G + NP QR + QL Sbjct: 180 AKKERIILLNSSAVTSIQKYMEVYEYFIPNGYKMSQWLFPGTKFD--NPVTRQR-VGQLL 236 Query: 252 RYLGLPLS-----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + L + + H LRHSFATHLL+NG D+ IQ +LGH L+TTQIYT+V S+ Sbjct: 237 KNLAMNAGINVTHVSPHKLRHSFATHLLNNGSDIVFIQKMLGHANLATTQIYTHVASE 294 >gi|253576347|ref|ZP_04853677.1| tyrosine recombinase XerD [Paenibacillus sp. oral taxon 786 str. D14] gi|251844240|gb|EES72258.1| tyrosine recombinase XerD [Paenibacillus sp. oral taxon 786 str. D14] Length = 323 Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 88/312 (28%), Positives = 149/312 (47%), Gaps = 28/312 (8%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 ++ +++ L +RGLS+ T +SY D +Q++ +L + I RQ++ I + Sbjct: 3 RDAASFISFLAGQRGLSEATRESYARDLKQYISYL-----QSKQISDYRQVTRAGILLYF 57 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 + + +++R +++F +YL ++R+I E + M + K P Q Sbjct: 58 AYLKDLGKAPATIQRVSVTLRAFFRYLLQERRI--EQDPFIMLEMPKVEKKP-----PQT 110 Query: 135 LTLVDNV-LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 LT+ + LL + R+ A+L LLY G+R+SE +SL ++ + LR G+ Sbjct: 111 LTVEETERLLEAPKPDTPLGLRDKAMLELLYATGIRVSELISLNKDDVNLELHFLRCTGE 170 Query: 194 GDKIRIVPLLPSVRKAILEYYDL------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 K RI+P E+ DL L+ LF RG ++ F + + Sbjct: 171 RGKERILPF----GGVTAEWLDLYLREGRSHLILDERENPALFPNRRGGRISRQGFWKLM 226 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 ++ + G+ T HTLRHSFA HLL G D+RS+Q +LGH ST Q+Y + + N Sbjct: 227 KKYGQEAGITSDITPHTLRHSFAVHLLERGADVRSVQELLGHSDASTIQMYVSRSRSN-- 284 Query: 308 DWMMEIYDQTHP 319 + +YD HP Sbjct: 285 --LKTVYDAFHP 294 >gi|118467405|ref|YP_888043.1| site-specific tyrosine recombinase XerD [Mycobacterium smegmatis str. MC2 155] gi|118168692|gb|ABK69588.1| tyrosine recombinase XerD [Mycobacterium smegmatis str. MC2 155] Length = 318 Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 85/310 (27%), Positives = 144/310 (46%), Gaps = 19/310 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS-- 76 Q +L +L IERG++ TL SY D R++ L + I + +++ +++ F+ Sbjct: 16 QGYLDHLTIERGVAANTLSSYRRDLRRYAEHL-----RQRGIDDLARVAESDVSDFLVAL 70 Query: 77 KRRTQKIGDRSLKRSLSGIK-----SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131 +R G +L + ++ +T ++ S LP++L Sbjct: 71 RRGDPDAGVTALSAVSAARAVVAVRGLHRFAAAEGLTENDVARAVKPPTPSRRLPKSLTL 130 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 + L L++ + ++ + RN A+L LLY G RISEA+ L ++ ++ + Sbjct: 131 DEVLALLEAAGGDSEADSP-LTLRNRALLELLYSTGARISEAVGLDVDDVDTQARSVLLH 189 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQ 249 GKG K R+VP+ A+ Y DL + +F RG L+ + ++ Sbjct: 190 GKGGKQRLVPIGRPAVSALDAYLVRGRPDLARRGRGTPAIFLNARGGRLSRQSAWQVLQD 249 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 G+ + + HTLRHSFATHLL G D+R +Q +LGH ++TTQIYT V Sbjct: 250 SAERAGIASAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMVTVHT---- 305 Query: 310 MMEIYDQTHP 319 + E++ HP Sbjct: 306 LREVWAGAHP 315 >gi|238756290|ref|ZP_04617605.1| Tyrosine recombinase [Yersinia ruckeri ATCC 29473] gi|238705496|gb|EEP97898.1| Tyrosine recombinase [Yersinia ruckeri ATCC 29473] Length = 276 Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 75/286 (26%), Positives = 140/286 (48%), Gaps = 17/286 (5%) Query: 34 LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93 +T+ SY +RQ + + + + L ++R+ +S+ + + SL LS Sbjct: 1 MTITSY---SRQLQALMELAGQ--MELSHWENLDAAQVRSLVSRSKRAGLQSASLALRLS 55 Query: 94 GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153 ++SFL +L + + + + + LP+ ++ + L+D L + Sbjct: 56 ALRSFLDWLVSQGVLHANPAKGVSTPRTGRHLPKNIDVDEVSRLLDIDL------NDPLA 109 Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213 R+ A+L ++YG GLR++E + + +++ + + GKG K R VP+ + L++ Sbjct: 110 VRDRAMLEVMYGAGLRLAELVGMDGKHVDLASGEIWVMGKGSKERKVPM-GATAVTWLQH 168 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 + L DL +F GK ++ Q+ + G+ H LRHSFATH+ Sbjct: 169 W-LALRDLFAPSDDAIFLANTGKRISARNVQKRFAEWGIKQGVSSHIHPHKLRHSFATHM 227 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 L + GDLR++Q +LGH L+TTQIYT+++ ++ + +YD HP Sbjct: 228 LESSGDLRAVQELLGHANLTTTQIYTHLDFQH----LATVYDAAHP 269 >gi|254476039|ref|ZP_05089425.1| tyrosine recombinase XerD [Ruegeria sp. R11] gi|214030282|gb|EEB71117.1| tyrosine recombinase XerD [Ruegeria sp. R11] Length = 332 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 86/281 (30%), Positives = 135/281 (48%), Gaps = 18/281 (6%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 G + TL +Y D + +LA +I +T S +I +++ + + + Sbjct: 23 GAAHNTLLAYGRDLKDVAAWLA---ARQIGFETA---SRDQIESYLIACDAEGLSRATRA 76 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 R LS IK ++ ++ + ++ + SLP+ L + L+D + Sbjct: 77 RRLSAIKQIYRFAFDEGWRDDNPAIQIKGPGRQKSLPKTLEVIEVDKLLDAARQSGRNLP 136 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 I RN+ ++ LLY G+R+SE + L D L + GKG K R+VPL P R A Sbjct: 137 DRI--RNTCLMELLYATGMRVSELVGLPVTAARGDPRMLLVLGKGGKERMVPLSPPARDA 194 Query: 210 I---LEYYDLCPFDLNLNIQLP---LF--RGIRGKPLNPGVFQRYIRQLRRYLGL-PLST 260 + L + D P LF RG G L F I++ G+ P + Sbjct: 195 LAAWLAHRDKAEEAAVAKGAPPSRYLFPSRGKSGH-LTRHRFYLLIKEFAVTAGISPEAV 253 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + HTLRH+FATHLL+NG DLR+IQ++LGH ++TT+IYT+V Sbjct: 254 SPHTLRHAFATHLLANGADLRAIQALLGHADIATTEIYTHV 294 >gi|227504796|ref|ZP_03934845.1| site-specific tyrosine recombinase XerC [Corynebacterium striatum ATCC 6940] gi|227198646|gb|EEI78694.1| site-specific tyrosine recombinase XerC [Corynebacterium striatum ATCC 6940] Length = 299 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 66/200 (33%), Positives = 104/200 (52%), Gaps = 10/200 (5%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 K LP+ L +A LV N H E ++ R+SA+L LLY G+R++E + L Sbjct: 108 KVGKHLPKVLAATEAGELVGNAASHD--EVHFL--RDSAMLELLYATGMRVAELVGLDVG 163 Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239 ++ + T + GKG+K R+VP + A+ + + L + +F G RG ++ Sbjct: 164 DLDLHRRTALVTGKGNKQRVVPFGDAASDALATWIEKGRLQLAGDTD-AVFVGTRGGRID 222 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 +R + + + G T H LRH+ ATHLL G DLR +Q +LGH L TTQ+YT Sbjct: 223 QRQVRRVVEKAAQITG-ATGLTPHGLRHTAATHLLEGGADLRVVQELLGHSSLQTTQVYT 281 Query: 300 NVNSKNGGDWMMEIYDQTHP 319 +V++K + + Y + HP Sbjct: 282 HVSAKR----LKDAYSRAHP 297 >gi|86133261|ref|ZP_01051843.1| phage integrase family protein [Polaribacter sp. MED152] gi|85820124|gb|EAQ41271.1| phage integrase family protein [Polaribacter sp. MED152] Length = 385 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 86/279 (30%), Positives = 140/279 (50%), Gaps = 36/279 (12%) Query: 32 SKLTLQSYECDTRQFLI--FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 S+ TL++Y F I F+ F++++ + L ++ FI K ++ S + Sbjct: 107 SESTLKTY-----TFFIADFINFHSKKACS-----DLDNRDVELFIEKVFIERNYSVSSQ 156 Query: 90 RS-LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 R +S +K F Y KI N + + KKS LP L++++ L ++ Sbjct: 157 RQFISALKIFTNYYPSTKI----NDIELTRPKKSKKLPSVLSQEEVLRIISVT------- 205 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVR 207 + ++ AI+ LLY CGLRISE ++L ++ ++ L ++ GKG K R V L S Sbjct: 206 ---TNLKHRAIIALLYSCGLRISELINLKLKDFHIERKQLIVKSGKGRKDRYVSLAESFM 262 Query: 208 KAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 + YY P + G+ G+ + + ++++ + G+ + T HTLR Sbjct: 263 PLLKNYYYSYEPKEF-------FVEGMNGEKYSASSVRAFLKKSCKKAGIQRAVTPHTLR 315 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 HS+ATHLL NG D+R IQS+LGH R TT IYT+V K+ Sbjct: 316 HSYATHLLENGVDIRYIQSLLGHSRPETTMIYTHVKRKD 354 >gi|291548057|emb|CBL21165.1| tyrosine recombinase XerD subunit [Ruminococcus sp. SR1/5] Length = 294 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 80/287 (27%), Positives = 136/287 (47%), Gaps = 24/287 (8%) Query: 38 SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97 SY+ D ++ ++ A I IR + E+ ++S + ++ R+++ I++ Sbjct: 25 SYQRDLKKMAVYFA-----DRGIYDIRDVGELELEGYLSYMERGQFASSTISRNVASIRA 79 Query: 98 FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157 +YL + L ++ K +P L + L+ L+T K I R+S Sbjct: 80 LFQYLYQENRIERDPSLELKPPKVEKRMPEILTVDEVDRLLKQPDLNTP---KGI--RDS 134 Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLR----IQGKGDKIRIVPLLPSVRKAILEY 213 A+L LLY G+R+SE L L +++ LR + DK R++P+ + A+ +Y Sbjct: 135 AMLELLYATGMRVSELLRLNLEDL-----NLRLGYVVCHDEDKERVIPIGNVCKTAMEKY 189 Query: 214 YDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 + N LF GK ++ F + ++ G+ T HTLRHSFA H Sbjct: 190 LKEARGKFVKENETESLFTNCSGKSMSRQGFWKVLKGYAEEAGIQHDITPHTLRHSFAAH 249 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 +L NG D++S+Q +LGH +STTQ+Y N G M ++Y + HP Sbjct: 250 MLQNGADVKSVQEMLGHSDISTTQVYLNF----GVAKMRDVYMKAHP 292 >gi|157960209|ref|YP_001500243.1| tyrosine recombinase XerC [Shewanella pealeana ATCC 700345] gi|157845209|gb|ABV85708.1| tyrosine recombinase XerC [Shewanella pealeana ATCC 700345] Length = 304 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 93/331 (28%), Positives = 161/331 (48%), Gaps = 47/331 (14%) Query: 13 ELLKERQNWLQNLE----IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS- 67 E L WL + E ER +S T+++Y + ++ EK+ +T LS Sbjct: 4 EALSSNVRWLTDFERYLRTERQVSAYTVRNYLFELKRV---------EKLFSETDSWLSL 54 Query: 68 -YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126 + ++A ++K + + RSL +LS +K F ++L + + + +++ K+ LP Sbjct: 55 QHESLQAMLAKLHRKGLSPRSLSLTLSSLKQFYEFLLREQQIKVNPAISLTAPKQGKPLP 114 Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDA-----RNSAILYLLYGCGLRISEALSLTPQNI 181 + ++ VD+V SH R+ AI+ L Y GLR++E +L +I Sbjct: 115 KNMD-------VDSV----SHLLDLDGDDPLSLRDKAIMELFYSSGLRLAELAALNVGDI 163 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGK 236 Q+ +++ GKG K RIVP+ AI ++ D+ C D LF +GK Sbjct: 164 QFSQAQVKVLGKGSKERIVPIGKLALTAINQWLDIKRDIACEDD-------ALFVTAKGK 216 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 L Q + + + + + H LRHSFATH+L + DLR++Q +LGH LSTTQ Sbjct: 217 RLAHRSIQARLAKWGQEQAIGIKVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQ 276 Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327 +YT+++ ++ + ++YD HP ++ K Sbjct: 277 VYTSLDFQH----LAKVYDNAHPRAKKRGDK 303 >gi|189465402|ref|ZP_03014187.1| hypothetical protein BACINT_01751 [Bacteroides intestinalis DSM 17393] gi|189437676|gb|EDV06661.1| hypothetical protein BACINT_01751 [Bacteroides intestinalis DSM 17393] Length = 294 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 81/311 (26%), Positives = 152/311 (48%), Gaps = 33/311 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++L L+ ER S+ T++SY D RQF E+ + I + +E++A + + Sbjct: 5 DSFLDYLQYERNYSEETIKSYREDLRQF---------EEFAREEIGDSAPSEVKAELVRE 55 Query: 79 RTQKIGDR-----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 + DR S+ R LS ++SF K+L ++ + + + K LP L E Sbjct: 56 WIVSLMDRGYTSTSINRKLSSLRSFYKFLLRKGEVAVNPLQKITGPKNKKPLPAFLRESD 115 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L+D V + R+ I+ + Y G+R+SE + L +++ S +++ GK Sbjct: 116 MDRLLDEVDFGEG----FKGCRDHMIIEMFYATGVRLSELIGLDNKDVDFSSSLIKVTGK 171 Query: 194 GDKIRIVPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-R 248 +K R++P ++ A++EY D+ P N F G+ L+ + + + R Sbjct: 172 RNKQRLIPFGEELKIAMMEYVDVRNEAVPIRTN-----AFFVRENGERLSRSIVENLVKR 226 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 L + + L + H LRH+FAT +L++ +L +I+ +LGH L+TT++YT+ + Sbjct: 227 NLSKVVTLK-KRSPHVLRHTFATTMLNHDAELGAIKELLGHESLATTEVYTHTTFEE--- 282 Query: 309 WMMEIYDQTHP 319 + ++Y+ HP Sbjct: 283 -LKKVYNLAHP 292 >gi|289643920|ref|ZP_06476023.1| tyrosine recombinase XerD [Frankia symbiont of Datisca glomerata] gi|289506249|gb|EFD27245.1| tyrosine recombinase XerD [Frankia symbiont of Datisca glomerata] Length = 323 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 96/333 (28%), Positives = 152/333 (45%), Gaps = 62/333 (18%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS---YTEIRAFI 75 + +L +L ERGL++ ++ +Y D R++L E ++++ +R L+ +E+ F Sbjct: 10 ERFLDHLAGERGLARNSVLAYRRDLRRYL--------EHLSLRGVRSLADVDESEVAEFA 61 Query: 76 SKRRTQK-----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 + R + S+ R L ++S ++ + T +R LPRAL Sbjct: 62 ATLREGAGEHPPLAASSVARMLVSVRSLHRFAAREGEVTSDVSRPVRPPTPPRRLPRALT 121 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNS------AILYLLYGCGLRISEALSLTPQNIMDD 184 Q + ++ + A S A+L LLYG G RISEA+ L ++ D Sbjct: 122 VDQVVAVLRAASTSAAGGPGGDPAEGSRQLRAVALLELLYGTGARISEAVGLDVDDLDLD 181 Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL------ 238 +++R+ GKG + R+VPL +A+ Y +R +P+ Sbjct: 182 AASVRLLGKGGRARVVPLGRYAGEALAAYL------------------VRARPVLASRRA 223 Query: 239 NPGVF--QRYIRQLRRYLGLPLSTTA----------HTLRHSFATHLLSNGGDLRSIQSI 286 +P VF +R R R+ L T A H LRHSFATHLL G D+R +Q + Sbjct: 224 SPAVFLSRRGTRLSRQSAWTVLRTAAVAAGVEGVSPHVLRHSFATHLLDGGADVRVVQEL 283 Query: 287 LGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LGH +STTQIYT V D + E+Y +HP Sbjct: 284 LGHASVSTTQIYTLVTV----DRLREVYATSHP 312 >gi|288929393|ref|ZP_06423238.1| site-specific recombinase, phage integrase family/ribosomal subunit interface protein [Prevotella sp. oral taxon 317 str. F0108] gi|288329495|gb|EFC68081.1| site-specific recombinase, phage integrase family/ribosomal subunit interface protein [Prevotella sp. oral taxon 317 str. F0108] Length = 293 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 85/307 (27%), Positives = 145/307 (47%), Gaps = 25/307 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L+ E S+LT+ SY D R F F + K T QLS+ + A + + Sbjct: 4 EQFLNYLQYELNRSELTIASYGDDLRAFEAFF----KNKDT-----QLSWEAVDADLIRN 54 Query: 79 RTQKIGDR-----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 + + D+ +++R LS ++SF ++ R ++ + K+S LP+ L E + Sbjct: 55 WMESMMDKGCSATTIQRRLSALRSFYRFGLTRGYVEKNPARGVVGPKRSRPLPQFLREGE 114 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L+D V + S+ D I+ Y G+R++E + L +I +++ GK Sbjct: 115 MDRLLDEVPVGESYR----DLLAYTIVLTFYSTGMRLAELVGLNDDSIDFGARVIKVLGK 170 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 G K R++P + A+ Y + D + F RG+ + G Q +R Sbjct: 171 GSKQRLIPFADELEAALKAY--IARRDAEVARCDKAFFVDQRGERVKRGAVQNSVRASLA 228 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 + + H LRHSFAT +L+N L S++ +LGH LSTT+IYT+ + + + Sbjct: 229 KVTSMKKRSPHVLRHSFATAMLNNDAGLESVKKLLGHESLSTTEIYTHTTFEQ----LRK 284 Query: 313 IYDQTHP 319 IYD+ HP Sbjct: 285 IYDKAHP 291 >gi|288947732|ref|YP_003445115.1| integrase family protein [Allochromatium vinosum DSM 180] gi|288898248|gb|ADC64083.1| integrase family protein [Allochromatium vinosum DSM 180] Length = 308 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 83/299 (27%), Positives = 144/299 (48%), Gaps = 25/299 (8%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS- 76 R++++ +L RG ++ T Y D L + +E + R+ S+ E+ +I+ Sbjct: 10 RKDFMSHLRYTRGCAESTCYGYHSD----LGIWGRWLDE--SEHDWRECSHIEVEQWINV 63 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE----- 131 + R +K+ + R +S + +F K+ K K+ + K +P L Sbjct: 64 QTRERKVKPHIISRRVSALSTFYKWALKSKLVETDPVYLAEKPKTPQRIPIWLERDEQDR 123 Query: 132 -KQAL----TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---D 183 K+AL L +N+ +T I R + LL GLRISEAL+L +++ Sbjct: 124 LKEALRDISDLPENIFGNTPETIMLIRQRYQVLFDLLQNSGLRISEALALRVRDVRVTGQ 183 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 ++R+ GKG+K R+VPL + + + + P D + + G P P Sbjct: 184 IARSVRVIGKGNKERMVPLPVAFGEELAAWISDLPSD-----EFIFAKESGGDPPKPRTV 238 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + Y+ ++ + GL T H LRH++AT LL +G +L IQ++LGH L+TTQ+YT+V+ Sbjct: 239 RDYLSKIIKKAGLDKKITPHKLRHTYATRLLESGAELIDIQALLGHANLATTQMYTHVS 297 >gi|238750683|ref|ZP_04612182.1| Tyrosine recombinase [Yersinia rohdei ATCC 43380] gi|238711073|gb|EEQ03292.1| Tyrosine recombinase [Yersinia rohdei ATCC 43380] Length = 263 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 72/264 (27%), Positives = 132/264 (50%), Gaps = 12/264 (4%) Query: 56 EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115 E + + + L ++R+ +S+ + + SL LS ++SFL +L + + + Sbjct: 5 EPMGLVHWQTLDAAQVRSLVSRSKRAGLHSSSLALRLSALRSFLDWLVSQGVLNANPAKG 64 Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175 + + LP+ ++ + L+D L + R+ A+L ++YG GLR+SE + Sbjct: 65 VSTPRSGRHLPKNIDVDEVDKLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVG 118 Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235 + +++ + + GKG K R VP+ + LE++ L +L +F G Sbjct: 119 MNCKHVDLASGEVWVMGKGSKERKVPIGKTA-VTWLEHW-LALRELFEPQDDAIFLANTG 176 Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 K ++ Q+ + G+ H LRHSFATH+L + GDLR++Q +LGH L+TT Sbjct: 177 KRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTT 236 Query: 296 QIYTNVNSKNGGDWMMEIYDQTHP 319 QIYT+++ ++ + +YD HP Sbjct: 237 QIYTHLDFQH----LATVYDAAHP 256 >gi|293372459|ref|ZP_06618843.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292632642|gb|EFF51236.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 196 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 63/163 (38%), Positives = 96/163 (58%), Gaps = 16/163 (9%) Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 +K RN AIL LY CGLR+SE ++L ++ D+ ++++GKG K R+VP+ P + Sbjct: 14 SKAEGQRNRAILETLYSCGLRVSELITLKLSDLYFDEGFIKVEGKGSKQRLVPISP---R 70 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGI---------RGKPLNPGVFQRYIRQLRRYLGLPLS 259 AI E P D N Q+ + +G RGK L+ + I++L G+ + Sbjct: 71 AINEIKLYIP-DRN---QIEVKKGHEDFVFVSQRRGKGLSRIMIFHMIKELAEKAGITKN 126 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ Sbjct: 127 ISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHID 169 >gi|149928222|ref|ZP_01916466.1| Tyrosine recombinase XerC [Limnobacter sp. MED105] gi|149823028|gb|EDM82269.1| Tyrosine recombinase XerC [Limnobacter sp. MED105] Length = 298 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 78/258 (30%), Positives = 128/258 (49%), Gaps = 13/258 (5%) Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 Q++ T +++ +++R SL R S + F KYL I L ++ K + S Sbjct: 48 QVTTTALKSILAQRHAAGAAPASLARLASSWRGFFKYLLNNGIVEVDPTLGLKTPKLTRS 107 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 LP+A+ L+ L E ++ A+ ++ LLY GLRISEAL+L + ++ Sbjct: 108 LPKAVGVDPLAALLAKPL---PQEFRF--AQAHVLIELLYCTGLRISEALTLQAEA-LNG 161 Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYD---LCPFDLNLNIQLPLFRGIRGKPLNPG 241 + LR+ GKG+K RIVP++ +++ + E+ + + L LF +G L Sbjct: 162 STELRVVGKGNKARIVPVVDALQARLREFVEPRQIHLLKLGKGQGASLFVSAKGLALTAR 221 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 QR I GL H LRHSF +HLL +LR++Q +LGH +++TQ+YT + Sbjct: 222 QAQRDIADHAAKCGLGQHLHPHMLRHSFGSHLLQGTQNLRAVQELLGHASIASTQVYTAL 281 Query: 302 NSKNGGDWMMEIYDQTHP 319 + D + +YD P Sbjct: 282 DF----DHLSSVYDNAFP 295 >gi|51459866|gb|AAU03829.1| integrase/recombinase [Rickettsia typhi str. Wilmington] Length = 297 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 90/289 (31%), Positives = 148/289 (51%), Gaps = 24/289 (8%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87 ER LSK ++ SY+ R L F + T++KI+ I + IR +I + + RS Sbjct: 5 ERALSKNSILSYK---RDLLDFHNYLTKQKISELNI---TTRNIRKWIEYLASNNLHARS 58 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 + R +S IKS+ +L T + +LN+ K N LP L+ Q + +L + S Sbjct: 59 INRKISTIKSYYTFLISENHTAFNPVLNVDLPKYQNKLPVILSIDQ----IKLILEYCSK 114 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-------LRIQGKGDKIRIV 200 + R +A+++LLY GLR+SE +SL +I+ + ++ + GKG+K R++ Sbjct: 115 DHTPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNNTSKGIVRKIFSVLGKGNKERVI 174 Query: 201 PLLPSVRKAILEYYDLCPFDLNLN-----IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 + +I +Y + +N I L + G + F ++ + +G Sbjct: 175 VINDQAVLSITKYLKIRDIFVNKAKSKNLIYLFPSSAVAGY-MTRQNFAILLKSVALDIG 233 Query: 256 L-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 L P + + H LRHSFA+HLL G DLR IQ +LGH +STTQIYT++++ Sbjct: 234 LNPKNVSPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLHT 282 >gi|329956681|ref|ZP_08297254.1| putative tyrosine recombinase XerC [Bacteroides clarus YIT 12056] gi|328524053|gb|EGF51129.1| putative tyrosine recombinase XerC [Bacteroides clarus YIT 12056] Length = 294 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 82/306 (26%), Positives = 148/306 (48%), Gaps = 23/306 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++L L ER SK T++ Y D ++ L + EE + T + +R +I+ Sbjct: 5 DSFLDYLLYERNYSKYTVEFYRTD----ILELQKFGEELLGNLTPSDVDVELVREWIASL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S+ R LS I+++ KYL ++ + + + +K LP L E + L+ Sbjct: 61 MDRGYAFNSINRKLSSIRTYYKYLLRKGVVESDPLQKITRPRKKKPLPVFLRESEMNRLL 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D++ E R+ I+ + Y G+R+SE + L +++ S +++ GK +K R Sbjct: 121 DDIDFGEGFEG----CRDRMIVEMFYATGMRLSELVGLDDKDVDFLASLIKVVGKRNKQR 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ--LRRYLGL 256 ++P +R ++ EY + N P+ N G R I ++R L Sbjct: 177 LIPFDEELRCSMQEYVN------ERNKSFPVRSDAFFIRKNGGRITRSIVAYIVKRNLSK 230 Query: 257 PLST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 ++ + H LRH+FAT +L+NG DL SI+ +LGH L+TT++YT+ + + ++ Sbjct: 231 VVTVKKRSPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHATFEE----LKKV 286 Query: 314 YDQTHP 319 Y+Q HP Sbjct: 287 YNQAHP 292 >gi|298346742|ref|YP_003719429.1| integrase/recombinase XerD family protein [Mobiluncus curtisii ATCC 43063] gi|298236803|gb|ADI67935.1| integrase/recombinase XerD family protein [Mobiluncus curtisii ATCC 43063] Length = 309 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 90/310 (29%), Positives = 149/310 (48%), Gaps = 22/310 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFL---AFYTEEKITIQTIRQLSYTEIRAFI 75 Q +L L +ERG S T+ +Y D R+++ FL + +++T+ + + F Sbjct: 9 QPYLDYLVVERGASPHTVAAYTRDLRRYITFLIANGVNSLDEVTLPLLESFARALEAGFG 68 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 + S +R+++ ++S+ +Y + + + K LP L ++ Sbjct: 69 DY---AAVAPSSARRAIASVRSWHRYAYETGAVRANPTKGIAPAKVGAHLPTVLTVEEVQ 125 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTL-RIQGK 193 TL++ S R+ A+L LY G RISEA++L +I +D++ L R+ GK Sbjct: 126 TLLEA----ASAPGDDNALRDRALLEFLYATGARISEAVNLAVDDINLDEEIPLVRLFGK 181 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQ 249 G K R+ +L + K LE Y L L Q +F G+PL+ I+ Sbjct: 182 GRKERL-SMLGHLAKDALEAY-LVRVRPRLAEKGRSQGRVFLNTLGRPLSRQSAWAIIQA 239 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 + + + HTLRH FATHLL G D+R++Q +LGH ++TTQIYT V++ D Sbjct: 240 AAQRAQITVPVGPHTLRHCFATHLLQGGADVRAVQELLGHASVTTTQIYTKVSN----DM 295 Query: 310 MMEIYDQTHP 319 + E+Y HP Sbjct: 296 LREVYASAHP 305 >gi|145594467|ref|YP_001158764.1| site-specific tyrosine recombinase XerD [Salinispora tropica CNB-440] gi|145303804|gb|ABP54386.1| tyrosine recombinase XerD [Salinispora tropica CNB-440] Length = 325 Score = 105 bits (263), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 89/315 (28%), Positives = 139/315 (44%), Gaps = 25/315 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L +L +ERGL+ TL SY D +L LA I + + ++ ++ A +++ Sbjct: 18 RGYLDHLAVERGLAANTLASYRRDLAHYLDTLA-----SIGVTDLASVAPGQVEAHLARL 72 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R G R L S + R E L + + P V Sbjct: 73 RVGNEGRRPLAASSAARAVSAVRGLHRFALREG--LTGADPSRDVRPPAPPRRLPRALPV 130 Query: 139 DNVL--------LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 D+V+ + + + R+ A+L LYG G RISEA+ ++ D + + Sbjct: 131 DDVIRLLEAVGPVSAAGGQAPLGLRDRALLEFLYGTGARISEAVGAAVDDLDLDAGAVLL 190 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIR 248 +GKG + R+VP+ A+ Y P P +F RG PL+ +R Sbjct: 191 RGKGGRNRLVPIGGYAVAALHAYLVRARPGLAAAGGGTPRVFLNSRGGPLSRQGAWTILR 250 Query: 249 QLRRYLGL----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 R GL P + + HTLRHS+ATHLL G D+R +Q +LGH ++TTQ+YT V + Sbjct: 251 NAARRAGLSDVGPQAVSPHTLRHSYATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVE 310 Query: 305 NGGDWMMEIYDQTHP 319 + E+Y HP Sbjct: 311 R----LREVYATAHP 321 >gi|24375788|ref|NP_719831.1| integrase/recombinase XerC [Shewanella oneidensis MR-1] gi|34222793|sp|Q7ZAJ5|XERC_SHEON RecName: Full=Tyrosine recombinase xerC gi|24350736|gb|AAN57275.1|AE015863_4 integrase/recombinase XerC [Shewanella oneidensis MR-1] Length = 299 Score = 105 bits (263), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 90/308 (29%), Positives = 156/308 (50%), Gaps = 30/308 (9%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 ++ ER LS T+++Y + ++ L E I + + + + ++ ++K + + Sbjct: 16 MQSERQLSAHTVRNYLYELQRGRELLP----EGIDLLNVGREHWQQV---LAKLHRKGLS 68 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--L 142 RSL LS +K + ++L + + + K++ LP+ ++ VD++ L Sbjct: 69 PRSLSLWLSAVKQWGEFLLRAGAIELNPAKGLSAPKQAKPLPKNID-------VDSLTHL 121 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202 L + R+ AI+ L Y GLR++E +L ++ DQ +R+ GKG+K RIVP+ Sbjct: 122 LEIDGNDP-LTLRDKAIMELFYSSGLRLAELAALDLSSVQYDQREVRVLGKGNKERIVPV 180 Query: 203 LPSVRKAI---LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 AI LE P + N LF +GK L+ Q + + + L + Sbjct: 181 GRYAIDAISAWLECRRQIPCEDN-----ALFVTEKGKRLSHRSIQARMSKWGQEQALSMR 235 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHSFATH+L + DLR++Q +LGH LSTTQIYT+++ ++ + ++YD HP Sbjct: 236 VHPHKLRHSFATHMLESSADLRAVQELLGHENLSTTQIYTSLDFQH----LAKVYDNAHP 291 Query: 320 -SITQKDK 326 + Q+DK Sbjct: 292 RAKKQQDK 299 >gi|206896382|ref|YP_002246413.1| tyrosine recombinase XerD [Coprothermobacter proteolyticus DSM 5265] gi|206738999|gb|ACI18077.1| tyrosine recombinase XerD [Coprothermobacter proteolyticus DSM 5265] Length = 288 Score = 105 bits (263), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 90/276 (32%), Positives = 142/276 (51%), Gaps = 21/276 (7%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 +++G S T+++Y D QF + T E+ + I ++ R+++ R ++ Sbjct: 10 VKKGKSPHTIKNYISDLMQFQKWFEESTGEQFSPGKITEIDVRSYRSYLINIR--QLKPS 67 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S+KR L I+ FL + K+ I +++ + PR+L+EK+ L L + Sbjct: 68 SIKRKLEAIRKFLDWTVKQDIISKNPAKEVEAPASVTLPPRSLSEKEFLRLRRSFY---- 123 Query: 147 HETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLL 203 K + R+ AI +L G+R+SE +L L+ I + + L ++ GKG K R VPL Sbjct: 124 ---KEGNERDIAIFEVLANTGIRVSELCSLKLSDVQISERKGKLIVRYGKGQKYREVPLN 180 Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTA 262 RKA+ EY + N LF G RG PL P GVF R I++ R G+ +S Sbjct: 181 SDARKALNEYLKSRADENNER----LFLGERG-PLTPSGVF-RIIKRYARDAGVEVS--P 232 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 H LRH+FA LL +G D+ ++Q ILGH L+TT +Y Sbjct: 233 HQLRHTFARRLLQSGADIVTVQQILGHANLNTTAVY 268 >gi|255026829|ref|ZP_05298815.1| hypothetical protein LmonocytFSL_11776 [Listeria monocytogenes FSL J2-003] Length = 259 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 71/265 (26%), Positives = 130/265 (49%), Gaps = 16/265 (6%) Query: 60 IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119 I T +Q+++ ++R ++++ + + ++ R +S ++SF +L + + E+ + + Sbjct: 4 ITTYQQVTFLDVRIYLTELKQKSFSRTTVARKISSLRSFYTFLLRENVINENPFTYVSHA 63 Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 K LP+ ++ L V + + + R+ +L +LYG G+R+SE + Sbjct: 64 KNQLRLPKFFYSEEMEALFQVVY----EDNETLTLRDRVLLEVLYGTGIRVSECAGILLP 119 Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIR 234 ++ + I+GKG+K R VP AI +Y P +NL + L Sbjct: 120 DLDTSYQAILIRGKGNKERYVPFGAYAEDAITDY---LPERVNLMSRYKKSHDALLVNHY 176 Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 G PL + + ++ L H LRH+FAT LL+NG D+R++Q +LGH LS+ Sbjct: 177 GDPLTTRGIRYCLTKIISKASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSS 236 Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHP 319 TQIYT+V ++ + Y + HP Sbjct: 237 TQIYTHVTKEH----LKSTYMKHHP 257 >gi|304384441|ref|ZP_07366845.1| tyrosine recombinase XerC [Prevotella marshii DSM 16973] gi|304334461|gb|EFM00750.1| tyrosine recombinase XerC [Prevotella marshii DSM 16973] Length = 301 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 83/311 (26%), Positives = 146/311 (46%), Gaps = 37/311 (11%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L+ E+ S T+QSY+ D ++F E I +Q LS+ + A + + Sbjct: 12 FLSYLQYEKRYSPRTVQSYDEDLKEF--------EAYIKVQG-NDLSWHSVDADVIRGWM 62 Query: 81 QKIGDR-----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 + + D+ ++ R LS ++SF ++ R + + + KK LP+ + E + Sbjct: 63 ESMMDKGNVATTINRRLSALRSFYRFSLSRNLVSHDPAHAVVGPKKEKPLPQFVKETEMD 122 Query: 136 TLVDNVLLHTSHETKW----IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 L D + +W D R IL Y G+R+SE L +I S LR+ Sbjct: 123 ELFD--------KNRWGDTFKDVRARTILLTFYSSGIRVSELTGLHVSDIDFASSELRVT 174 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 GK +K R++P + + ++ Y + + LF +G+P+ Q +++ Sbjct: 175 GKRNKQRVIPFGEELAEQLVRYLAIREVTAGYDTD-ALFITEKGRPMTMSQVQY---EVK 230 Query: 252 RYLGLPLS---TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 +YLG + + H LRH+FAT +L++G L S++ +LGH LSTT+IYT+ + Sbjct: 231 KYLGRVCTLKKRSPHVLRHTFATAMLNHGAGLESVKKLLGHESLSTTEIYTHTTFEQ--- 287 Query: 309 WMMEIYDQTHP 319 + +Y HP Sbjct: 288 -LKNVYTNAHP 297 >gi|189182982|ref|YP_001936767.1| site-specific tyrosine recombinase XerD [Orientia tsutsugamushi str. Ikeda] gi|189179753|dbj|BAG39533.1| integrase/recombinase XerD [Orientia tsutsugamushi str. Ikeda] Length = 309 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 91/318 (28%), Positives = 156/318 (49%), Gaps = 26/318 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ + E+ +S +L +Y+ D + F FL + I +Q+ ++ +I +FI Sbjct: 5 EQFLETVLAEKNVSANSLLAYKRDLQDFNDFL-----KSIQLQSSLAVTNNDIDSFIQHL 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + RS+ R +S ++ + +L + N+ + S LP+ L+ K+ L+ Sbjct: 60 LGKNLSFRSIARKISTLRQYYLFLLTENAVQADLVTNIEVPRYSTKLPKILSIKEIKVLI 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------G 192 D T+ E R A++ LLY GLR+SE +S+ ++ D +T +I+ G Sbjct: 120 DYCFKDTTAE----GIRTLAMICLLYSTGLRVSELVSVKITDLKFDHNTGKIKNHFVILG 175 Query: 193 KGDKIRIV---PLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYI 247 KG+K R+V L V L Y D PF N + LF + + F + Sbjct: 176 KGNKERLVIMNDLTGDVISKYLPYRDFFSPFK-NAKNSVYLFPSKAKQGYMTRQNFAILL 234 Query: 248 RQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 + GL P + + H LRHSFA+HLL G DL+ IQ +LGH +S+TQIYT+V Sbjct: 235 KHAAINAGLSPDNVSPHILRHSFASHLLEGGADLKVIQELLGHVDISSTQIYTHVQP--- 291 Query: 307 GDWMMEIYDQTHPSITQK 324 + + + ++ HP+ +K Sbjct: 292 -ERLKHVIEKYHPASLKK 308 >gi|313674236|ref|YP_004052232.1| integrase family protein [Marivirga tractuosa DSM 4126] gi|312940934|gb|ADR20124.1| integrase family protein [Marivirga tractuosa DSM 4126] Length = 379 Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 84/280 (30%), Positives = 140/280 (50%), Gaps = 31/280 (11%) Query: 28 ERGLSKLTLQSYECDTRQFLI-----FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 E L++L + Y C T + I F+ +Y+++K+T +L EI+ FI +K Sbjct: 109 ENYLNELNQRRYACSTVKSYIACFERFINYYSKKKMT-----ELGEEEIKKFIQNLIDKK 163 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 D S+ ++ IK + + ++K + + +K LP L++++ L ++ N Sbjct: 164 YSDSSVNMHINAIKFYYEVVEK----MPNRFYDFARPQKEERLPEVLSKEEILQMIANC- 218 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVP 201 H K + I+ LLY GLR SE L+L +I + ++ I Q KG K RI Sbjct: 219 ----HNLK-----HKCIVSLLYSAGLRRSELLNLKLTDIDSGRMSILIRQAKGKKDRISI 269 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 L ++ + Y+ + ++ LF G +G+ + + +++ + G+ T Sbjct: 270 LGNTILDDLRAYFK------SYRPKVFLFEGAQGQQYSSTSVSKIVKKTAQRAGIKKRVT 323 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 H LRHSFATHLL G DLR IQS+LGH +TT+IYT+V Sbjct: 324 PHMLRHSFATHLLEAGTDLRYIQSLLGHNNSNTTEIYTHV 363 >gi|295426272|ref|ZP_06818932.1| tyrosine recombinase XerC [Lactobacillus amylolyticus DSM 11664] gi|295064011|gb|EFG54959.1| tyrosine recombinase XerC [Lactobacillus amylolyticus DSM 11664] Length = 307 Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 87/313 (27%), Positives = 151/313 (48%), Gaps = 23/313 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 ++ L+ ER SK T+ SY+ D L+ + E ++ +I ++ Sbjct: 10 FISYLKNERQYSKNTILSYQTD----LLEAKSFWRENGGFVDWDKIQTRDIEVYLQSMAE 65 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKIT----TESNILNMRNLKKSNSLPRALNEKQALT 136 +K+ S R +S ++SF ++L KRK+ T++ +L K LP+ + Sbjct: 66 RKLSRNSQMRKMSSLRSFYRFLAKRKLIKVDPTQTIVLRTEERK----LPQFFYAPEMKQ 121 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 ++ ++ +T+ + RN A+ L Y G+R+SE SL + D + + GKG+K Sbjct: 122 VISSLQGNTA-----LTERNLALFELFYTTGMRVSEVSSLKINQVDFDLQMILVHGKGNK 176 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 R V + A+ Y + L + Q +F +G+PL + +++ Sbjct: 177 DRYVAFDDKTKSALQNYLENARPKLLGSKADQDFIFLNNQGQPLTDRGIEYIMQRTFNKA 236 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ H LRH+FAT +L+NG DLR++Q +LGH LSTTQIYT+V + + + Y Sbjct: 237 GISGKVHPHELRHTFATAMLNNGADLRTVQELLGHENLSTTQIYTHVTMAH----LQDEY 292 Query: 315 DQTHPSITQKDKK 327 + P ++KDKK Sbjct: 293 QKFFPRNSRKDKK 305 >gi|167764388|ref|ZP_02436513.1| hypothetical protein BACSTE_02776 [Bacteroides stercoris ATCC 43183] gi|167697793|gb|EDS14372.1| hypothetical protein BACSTE_02776 [Bacteroides stercoris ATCC 43183] Length = 294 Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 80/306 (26%), Positives = 148/306 (48%), Gaps = 23/306 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++L L ER S+ T++ Y D ++ L + E+ + + IR +I Sbjct: 5 DSFLDYLLYERNYSEGTVRYYRTD----ILELQKFGEKLLGDLAPSDVGVDLIREWIVSL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + ++ R LS ++++ KYL K+ + + + KK LP L E + L+ Sbjct: 61 MDKGYAPNTVNRKLSSVRTYYKYLLKKGLVAADPLRRVTGPKKKKPLPVFLREGEVDRLL 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D+V E R+ I+ + Y G+R+SE + L +++ S +++ GK +K R Sbjct: 121 DDVDFGERFEG----YRDRLIIEMFYTTGMRLSELIGLDDKDVDFSASLIKVTGKRNKQR 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-----FRGIRGKPLNPGVFQRYIRQLRRY 253 ++P + +++ EY ++ N LP+ F G+ L G+ +R+ Sbjct: 177 LIPFDKELGRSMQEYVNVR------NQALPVRSDAFFVRKNGERLGRGIVAYIVRRNLSK 230 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 + + H LRH+FAT +L+NG DL SI+ +LGH L+TT++YT+ + + ++ Sbjct: 231 VVTVKKRSPHVLRHTFATAMLNNGADLSSIKELLGHESLATTEVYTHTTFEE----LKKV 286 Query: 314 YDQTHP 319 Y+Q HP Sbjct: 287 YNQAHP 292 >gi|139439759|ref|ZP_01773150.1| Hypothetical protein COLAER_02181 [Collinsella aerofaciens ATCC 25986] gi|133774909|gb|EBA38729.1| Hypothetical protein COLAER_02181 [Collinsella aerofaciens ATCC 25986] Length = 220 Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 73/208 (35%), Positives = 99/208 (47%), Gaps = 17/208 (8%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 K LP L +Q LL T + R++A+L LLY G RISE +L + Sbjct: 19 KLPRDLPGVLTTQQV-----EALLKTPDTSTPAGLRDAAMLELLYASGARISELAALNVE 73 Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL--------PLFR 231 +I + TLR+ GKG K RIVPL +A Y + +L + PL Sbjct: 74 SIGWSERTLRLWGKGSKERIVPLYRRALEATRLYIEEGRPELLAQAKRRDPATGPHPLLI 133 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291 RG ++ + +R L G+P H +RH+FAT LL G DLRS+Q +LGH Sbjct: 134 SARGNRMSAAMLRRRFHTLATLAGIPADIAPHAMRHTFATDLLEGGADLRSVQELLGHAS 193 Query: 292 LSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LSTTQIYT++ D + Q HP Sbjct: 194 LSTTQIYTHLTP----DRLKRAVAQAHP 217 >gi|149184272|ref|ZP_01862590.1| integrase [Erythrobacter sp. SD-21] gi|148831592|gb|EDL50025.1| integrase [Erythrobacter sp. SD-21] Length = 292 Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 86/301 (28%), Positives = 140/301 (46%), Gaps = 23/301 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L L ERG ++ TL +Y D Q L EK+ T QL+ + Sbjct: 6 DFLAMLAAERGAARNTLLAYGRDLNQAEELLG----EKLAGATPAQLAKL-------GQG 54 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + +L R +S ++ F +L + + LP+ L+ Q L Sbjct: 55 WSSLAPATLARKISALRQFFGFLVDEGEREDDPTYALPRPATRRPLPKILSHAQVEALFG 114 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + + R A+L LLYG GLR SE +SL + D+ L + GKG + R+ Sbjct: 115 RAEDEAASDRPQA-VRLLAMLELLYGSGLRASELVSLPLSAVPRDEPFLTVTGKGGQARL 173 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 VP+ ++A+ + L P N LF G ++Q +++L LP Sbjct: 174 VPVSTRAKQALSRWLALRPTGSNY-----LFPSRSGHLTRIRLYQ-MLKELAVRADLPPE 227 Query: 260 T-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + H LRH+FATHLL G DLR++Q++LGH ++TTQIYT+V++ ++++ ++ H Sbjct: 228 KLSPHVLRHAFATHLLEGGADLRALQTLLGHADIATTQIYTHVDAAR----LVKLVNERH 283 Query: 319 P 319 P Sbjct: 284 P 284 >gi|118464686|ref|YP_882254.1| site-specific tyrosine recombinase XerD [Mycobacterium avium 104] gi|254775522|ref|ZP_05217038.1| site-specific tyrosine recombinase XerD [Mycobacterium avium subsp. avium ATCC 25291] gi|118165973|gb|ABK66870.1| tyrosine recombinase XerD [Mycobacterium avium 104] Length = 313 Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 90/325 (27%), Positives = 150/325 (46%), Gaps = 29/325 (8%) Query: 9 IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68 + + L + Q +L +L IERG++ TL SY D R++ L+ I + ++ Sbjct: 1 MTTVALETQLQGYLDHLTIERGVAANTLSSYRRDLRRYTKHLS-----DRGISDLAKVGE 55 Query: 69 TEIRAFISKRRTQKIGD----------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118 ++ F+ R GD S R+L ++ ++L + +R Sbjct: 56 DDVSDFLVALRR---GDPDTGAAALSAVSAARALIAVRGLHRFLAAEGLAELDVARAVRP 112 Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178 LP++L Q L L++ + + + RN A+L LLY G RISEA+ L Sbjct: 113 PTPGRRLPKSLTIDQVLALLEAAGGESPADGP-LTLRNRALLELLYSTGARISEAVGLDV 171 Query: 179 QNIMDDQSTLRIQGKGDKIRIVPL-LPSVRKAILEYYDL---CPFDLNLNIQLPLFRGIR 234 ++ ++ ++GKG K R+VP+ P+V A L+ Y + +F +R Sbjct: 172 DDVDTQARSVLLRGKGGKQRLVPIGRPAV--AALDAYLVRGRSELARRGRGTPAIFLNVR 229 Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 G L+ + ++ G+ + H LRHSFATHLL G D+R +Q +LGH ++T Sbjct: 230 GGRLSRQSAWQVLQDAAERAGITSGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTT 289 Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHP 319 TQIYT V + E++ + HP Sbjct: 290 TQIYTMVTVHA----LREVWAEAHP 310 >gi|240142448|ref|YP_002966958.1| putative site-specific integrase/recombinase [Methylobacterium extorquens AM1] gi|240012392|gb|ACS43617.1| Putative site-specific integrase/recombinase [Methylobacterium extorquens AM1] Length = 365 Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 88/314 (28%), Positives = 145/314 (46%), Gaps = 26/314 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL+ L ERG + +L Y R + FLA TI+ + +TE A + R Sbjct: 56 WLEALAAERGTATSSLGVYRTSARCWADFLA---SRGTTIEGASRADFTEYLAHLDAR-- 110 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + ++ + ++S ++L + + +K+ LP L + VD Sbjct: 111 -HLSEATIAHRRTVVRSLHRFLMAEEHVGYDPTSLVAPMKRPERLPLVLT----IAEVDR 165 Query: 141 VLLHTSHETKWID----------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 LL T+H D AR +A+ +LY G R+SEA++L I + + Sbjct: 166 -LLETAHALARDDTVGLYRQAGYARRAALFEVLYASGTRVSEAVNLPAAAIAPGARAMIV 224 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIR 248 +GKG K R+V L +A+ + DL +++ LF +R PL I+ Sbjct: 225 KGKGGKERLVMLHRRAIEAVEVWRDLAAAYGSVSDTW-LFHSVRNGAAPLTRQSALAEIK 283 Query: 249 QLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 + G+ P + H LRH+FA+HLLSNG DLRSIQ +LGH L TT+IY + +++ Sbjct: 284 EAAVAAGIRNPDRVSPHKLRHAFASHLLSNGADLRSIQELLGHADLGTTEIYLHTDTRRT 343 Query: 307 GDWMMEIYDQTHPS 320 + +++ P+ Sbjct: 344 HGMVRDLHPLNEPA 357 >gi|270294768|ref|ZP_06200969.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274015|gb|EFA19876.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 294 Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 78/306 (25%), Positives = 149/306 (48%), Gaps = 23/306 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++L L ER SK T++ Y D ++ L + EE + T + +R +I+ Sbjct: 5 DSFLDYLLHERNYSKGTVEYYRAD----ILELQRFGEEMLGDLTPSDVDAELVREWIASL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + ++ R LS ++++ K+L +R + + KK LP L E + L+ Sbjct: 61 MDKGLASNTINRKLSSVRTYYKFLLRRGKVAVDPLRKVTGPKKKKPLPVFLREGEMNRLL 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D++ E R+ I+ + Y G+R+SE + L +++ S +++ GK +K R Sbjct: 121 DDMDFGEGFEG----CRDHMIIEMFYATGMRLSELIGLDDKDVDFSASLVKVTGKRNKQR 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-----FRGIRGKPLNPGVFQRYIRQLRRY 253 ++P + +++ EY ++ N +P+ F GK L + +++ Sbjct: 177 LIPFDEELGRSMREYVNV------RNEAVPVRSDAFFVRKNGKRLYRSIVACLVKRNLSK 230 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 + + H LRH+FAT +L+NG DL SI+ +LGH L+TT++YT+ + + ++ Sbjct: 231 VVTVKKRSPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHTTFEE----LKKV 286 Query: 314 YDQTHP 319 Y+Q HP Sbjct: 287 YNQAHP 292 >gi|224543273|ref|ZP_03683812.1| hypothetical protein CATMIT_02473 [Catenibacterium mitsuokai DSM 15897] gi|224523806|gb|EEF92911.1| hypothetical protein CATMIT_02473 [Catenibacterium mitsuokai DSM 15897] Length = 297 Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 82/303 (27%), Positives = 149/303 (49%), Gaps = 21/303 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L ERGLS+ T+Q Y D + F ++ + I++ + I A+ + + Sbjct: 13 LLFERGLSENTVQGYIRDIKAFYEYIDY---------DIKKFDLSHIDAYFCELKDDGYK 63 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQALTLVDNVLL 143 S++R + ++ + ++L + + +I+ +L K++ LP+ L+ ++ + ++ ++ Sbjct: 64 VTSIRRKIVSLRQYNEFLSRTR--GMQDIMTQYDLPKTDKKLPKVLSLEEIIKVIKSI-- 119 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 ++ RN A++ LL G+RISE + L +I S + + GKG+K R++PL Sbjct: 120 ---DDSNPAGKRNKAMMLLLINTGMRISELVHLEINDINHSVSNVSVVGKGNKERLIPLD 176 Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 + Y N LF G+ + F +++L G+ T H Sbjct: 177 EETCSYVYSYMQNDRSFFNKKNNQWLFMMNDGRRMTRENFYNILQKLVIGAGVRDHFTPH 236 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323 LRH+FAT LL N DLRSIQ +LGH +STT IYT+V + +++ Y++ HP + Sbjct: 237 MLRHTFATTLLENHCDLRSIQVMLGHQDISTTTIYTHVTHRQ----ILDDYNKYHPGNAR 292 Query: 324 KDK 326 + K Sbjct: 293 RKK 295 >gi|238022334|ref|ZP_04602760.1| hypothetical protein GCWU000324_02241 [Kingella oralis ATCC 51147] gi|237866948|gb|EEP67990.1| hypothetical protein GCWU000324_02241 [Kingella oralis ATCC 51147] Length = 300 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 85/299 (28%), Positives = 147/299 (49%), Gaps = 20/299 (6%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L +L ++ LS+ TL +Y D + LA E +++T ++ A I + Q Sbjct: 17 LDHLWLQERLSQNTLDAYRRDLTKIATRLA---NEHSSLKTT---DAVQLAAAIYVAQEQ 70 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 RS R+LS K +L++ +++ ++R K++ +LP + E+ L++ Sbjct: 71 P---RSQARALSACKRLYAWLEETGQRSDNPCRDLRTAKQARTLPPIITEQHITDLLNAP 127 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 T H R+ A+L L+Y GLR+SEA+ L I + GKGDK RIVP Sbjct: 128 DTETPH-----GLRDKALLELIYATGLRVSEAVGLQLNEINLQSGMVNTIGKGDKQRIVP 182 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 + + Y L N + +F + ++ + + + G+P Sbjct: 183 MGEEAVYWLEHYLQHARPALLKNARCEAVFVSQKKTGISRQLAWMAVSRYAEQAGMP-HI 241 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H LRH+FATHL+++G DLR +Q++LGH ++TTQIYT+V ++ + ++ D+ HP Sbjct: 242 SPHDLRHAFATHLVNHGADLRVVQTLLGHADIATTQIYTHVANER----LKQVVDKFHP 296 >gi|312115313|ref|YP_004012909.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100] gi|311220442|gb|ADP71810.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100] Length = 334 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 91/303 (30%), Positives = 137/303 (45%), Gaps = 34/303 (11%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L + ERG S T+ +Y D R+ FLA E T + ++ AF S R Sbjct: 20 YLAMMRAERGASANTVAAYAADLREMSRFLAERGE------TFAACARADLEAFFSDRAE 73 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + S R LS +K F+ +L K+ + + +K LP L + + Sbjct: 74 AGLLANSAARKLSCLKRFMLFLVAEKMRDDDPARLIDGVKARRVLPMTLTIAEV-----D 128 Query: 141 VLLHTSHETKWI-DARNSA---------ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 +LL +H+ D + S+ +L LLY GLR+SE + L + D+ L + Sbjct: 129 LLLDAAHQAAAFGDPQTSSGRRALRLACLLELLYATGLRVSELVGLPRAAFLGDRKMLTV 188 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG-------VF 243 +GKG + RI+PL R + + D + + K L P Sbjct: 189 KGKGGRERIIPLNAKARTVLDCWLDALEAAARADGKAGGAGASASKWLFPSWGEDGHLTR 248 Query: 244 QRYIRQLRRYLGLPLSTTA-----HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 Q++ + L + LG L A H LRH+FATHLL G DLR +Q++LGH +STTQIY Sbjct: 249 QKFAQDL-KALGARLGIDAERLSPHVLRHAFATHLLDRGVDLRVLQTLLGHADISTTQIY 307 Query: 299 TNV 301 T+V Sbjct: 308 THV 310 >gi|254522819|ref|ZP_05134874.1| tyrosine recombinase XerD [Stenotrophomonas sp. SKA14] gi|219720410|gb|EED38935.1| tyrosine recombinase XerD [Stenotrophomonas sp. SKA14] Length = 325 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 91/310 (29%), Positives = 145/310 (46%), Gaps = 24/310 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +L + E GL++ TL SY D L LA + + + + + + +++ R Sbjct: 29 QRFLDAIWAENGLARATLDSYRRD----LEGLARWMDGRDG--GLAGIERPGLFDYLAWR 82 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 RS R LS ++++ +R +E + K LP+AL E Q Sbjct: 83 TRHGWSPRSNARLLSALRAYFADGVRRGERSEDPSALLDPPKLPRLLPKALAESQI---- 138 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + LL + + R+ A+L L+Y GLR+SE + L ++ Q +R+ GKG K R Sbjct: 139 -DALLAAPDVERPLGLRDRAMLELMYAAGLRVSELVLLPATSVNLRQGVIRVTGKGSKER 197 Query: 199 IVPLLPSVRKAILEYYDLCPFDLN--------LNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 +VPL + + Y L + Q PLF L F +++ Sbjct: 198 LVPLGEESQHWLERYLQQSRPQLVGKGRVQALADGQTPLFVEPTLHALTRQAFWHLVKRH 257 Query: 251 RRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 + G+ P + H LRHSFATHLL+ G DLR++Q +LGH LSTTQIYT V ++ Sbjct: 258 AQVAGIDPARISPHGLRHSFATHLLNRGADLRALQMLLGHSSLSTTQIYTLVAREH---- 313 Query: 310 MMEIYDQTHP 319 + +++ + HP Sbjct: 314 LQKLHARHHP 323 >gi|293192780|ref|ZP_06609675.1| tyrosine recombinase XerD [Actinomyces odontolyticus F0309] gi|292820027|gb|EFF79025.1| tyrosine recombinase XerD [Actinomyces odontolyticus F0309] Length = 315 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 90/316 (28%), Positives = 146/316 (46%), Gaps = 22/316 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLSYTEIRAFIS 76 ++W+ L +E+G S T+ +Y D ++ + + K+ ++ I R + +R Sbjct: 9 RDWVDYLRVEKGASAHTVSNYRRDVARYAFDM--KSRGKVNVEDISPRDIEDYTMRLASG 66 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + S+ R+ + I+ KY + ++ LP+AL+ Sbjct: 67 QVTGTPAAASSVARASAAIRGLHKYALTEGAVGTDAAAQLHAPRQGRHLPKALS------ 120 Query: 137 LVDNV--LLHTSH-ETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MD-DQSTLRIQ 191 VD V LL +H + I R++A+L LLY G R+SEA+SL+ ++ +D D +R+ Sbjct: 121 -VDEVGRLLDAAHADDSPIGLRDAALLELLYATGARVSEAVSLSADDLDLDGDVPVVRLF 179 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQ 249 GKG K R+VP+ A+ Y L + F RG L+ IR+ Sbjct: 180 GKGRKERVVPVGSFAVDALYAYRVRARPALAARGRGSTAFFLNSRGGALSRQSAWTAIRR 239 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 L + HTLRHSFATHLL G +R +Q +LGH ++TTQIYT V + Sbjct: 240 AAEAAQLGERVSPHTLRHSFATHLLEGGASVREVQELLGHASVATTQIYTQVTAT----V 295 Query: 310 MMEIYDQTHPSITQKD 325 + E++ +HP D Sbjct: 296 LREVFTLSHPRARGTD 311 >gi|187250446|ref|YP_001874928.1| integrase family protein [Elusimicrobium minutum Pei191] gi|186970606|gb|ACC97591.1| Integrase family protein [Elusimicrobium minutum Pei191] Length = 291 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 88/297 (29%), Positives = 137/297 (46%), Gaps = 19/297 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L ER LSK T+ +Y D F AF E Q +R I +I + + + Sbjct: 10 LSFERQLSKNTIYAYTNDVGDFF---AFCEENNTAPQNVRP---DFIDEYIYHLKQKGLS 63 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 +S+ R +KSF KYL E + + K + +P L +++ L+ Sbjct: 64 PKSVFRKTQAVKSFYKYLIINGDIKEDPCRFLLSPKLTQKIPETLTKEEISRLL------ 117 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + + + R IL L Y CGLR+SE +SL +++ + GKG K R +P+ Sbjct: 118 SFPPKTFAEIRTLTILELFYACGLRVSELVSLRIESVNLKDKWVLAYGKGAKQRFIPIHD 177 Query: 205 SVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 K +LE Y + + +F GK ++ + + L R G+ S Sbjct: 178 RAVK-VLEIYLSEREKYLKGKESASEIFINKNGKKISRMSVWKDVNDLGRLAGIERSLHP 236 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H RH+FATHLL G DLRS+Q +LGH L TTQIYT+++ ++ + E + + HP Sbjct: 237 HLFRHTFATHLLIGGADLRSLQEMLGHADLQTTQIYTHLDVQS----LKEKHKKFHP 289 >gi|288574964|ref|ZP_06393321.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570705|gb|EFC92262.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 297 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 80/302 (26%), Positives = 147/302 (48%), Gaps = 18/302 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +L L +E G S+ T ++Y D Q+ F + + + + Y + R Sbjct: 10 QFLSYLSLELGESQNTCKAYRVDISQWNDFCSRSGRDPVASDSDLYGKY------VHYMR 63 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTLV 138 + + +++R + +++++ +L S+ + M L + LP+ L E + L+ Sbjct: 64 SIDLAPATIQRKCAAVRTWINFLVVEGYV--SDDVPMPPLPDRPKRLPQLLTEGEVSRLL 121 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 ++D R+ AIL LYGCGLR SE SL +++ +++++ I GKG+K R Sbjct: 122 GAC---DGDPMGYLDFRDRAILETLYGCGLRASELCSLKLRDLQFERASMIIFGKGNKER 178 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +VPL+ S R+ I + D + +F G+P+ + IR+ G+ Sbjct: 179 MVPLVGSARRWIERFIDEARPSVAKEGVDQVFLSRNGRPMRRESLWKMIRKRGSRAGISQ 238 Query: 259 ST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 S H +RH+ A+HLL G DLR++Q LGH + TT+ Y + + + + ++YD++ Sbjct: 239 SRLHPHVIRHTVASHLLRRGMDLRTLQEFLGHESIGTTEKYLHFDQE-----LRDVYDRS 293 Query: 318 HP 319 HP Sbjct: 294 HP 295 >gi|86741839|ref|YP_482239.1| tyrosine recombinase XerD [Frankia sp. CcI3] gi|86568701|gb|ABD12510.1| Tyrosine recombinase XerD [Frankia sp. CcI3] Length = 443 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 95/338 (28%), Positives = 150/338 (44%), Gaps = 58/338 (17%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L +LE ERGL++ ++ +Y D R++ L+ + ++ + E+ F + Sbjct: 94 ERYLHHLEGERGLARNSVLAYRRDLRRYCDHLS-----ACGLPSLDAVGEAEVAGFAAVL 148 Query: 79 RT-----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 RT + S+ R L ++S ++ E +R LP+AL+ Q Sbjct: 149 RTGDDTHPPLAAASVARMLVAVRSLHRFAADEGDVPEDVSRPVRPPTPPRRLPKALSIDQ 208 Query: 134 ALTLVDNVLL-------------HTSHETKWIDA-------RNSAILYLLYGCGLRISEA 173 + ++ S + ++ R +A+L LLYG G RISEA Sbjct: 209 VVAVLAAAAGAPPPGSPPPSGRPQPSGRPQPVEPAEAVRRLRATALLELLYGTGARISEA 268 Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233 + L ++ + +++R+ GKG + RIVPL A+ +Y L + P Sbjct: 269 VGLDVDDLDLEAASVRLHGKGGRDRIVPLGRYAIAAVADY---------LRVGRPTLVAP 319 Query: 234 RGKPLNPGVF--QRYIRQLRRYLGLPLSTTA----------HTLRHSFATHLLSNGGDLR 281 R P VF +R R R+ L T A H LRHSFATHLL G D+R Sbjct: 320 RS---GPAVFLSRRGNRLSRQSAWSVLRTAALAAGVEGVSPHVLRHSFATHLLDGGADVR 376 Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 +Q +LGH +STTQIYT V D + E+Y +HP Sbjct: 377 VVQELLGHASVSTTQIYTLVTV----DRLREVYAASHP 410 >gi|85708393|ref|ZP_01039459.1| integrase [Erythrobacter sp. NAP1] gi|85689927|gb|EAQ29930.1| integrase [Erythrobacter sp. NAP1] Length = 295 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 85/304 (27%), Positives = 146/304 (48%), Gaps = 25/304 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L ERG + TL +Y D EE + + + S RA ++K Sbjct: 6 RAFLDMLAAERGAAANTLAAYRRDLDG--------AEE--ALGDLDKAS----RAAVAKL 51 Query: 79 RTQ--KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 Q + ++ R S ++ F + + + + LP+ L+ + T Sbjct: 52 SAQWASLAPSTVARKASALRQFFGFAVDEGWREDDPSGALPKPRTRRPLPKILSHEAVET 111 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L+ L ++ + R A+L +LYG GLR +E +SL ++ D + ++GKG + Sbjct: 112 LLQRAELE-ANSGQPTALRQLALLEMLYGSGLRATELVSLPLVSVPRDAPLITVKGKGGQ 170 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 R+VP+ ++A+ E+ + P D P RG GK L+ + +++L L Sbjct: 171 ARMVPVSERAKEALAEWVKVRPSDPPTGHLFP-SRG--GKHLSRVRLFQILKELAVRADL 227 Query: 257 -PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 P + H LRH+FATHLL G DLR +Q++LGH ++TTQIYT+V++ ++E+ + Sbjct: 228 DPAGISPHVLRHAFATHLLEGGADLRVLQTLLGHADIATTQIYTHVDAAR----LVELVN 283 Query: 316 QTHP 319 HP Sbjct: 284 SRHP 287 >gi|300726218|ref|ZP_07059671.1| tyrosine recombinase XerC [Prevotella bryantii B14] gi|299776415|gb|EFI72972.1| tyrosine recombinase XerC [Prevotella bryantii B14] Length = 293 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 85/303 (28%), Positives = 146/303 (48%), Gaps = 17/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L L+ E S+ T+QSY D R F + ++ ++ +++ +R +I Sbjct: 4 EDFLDYLQFELNRSERTVQSYGDDLRAFQSYFE-GLDDHLSWESVDS---DVVRGWIELM 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S+ R LS +++F ++ RK + ++ K+ LP+ L E + L+ Sbjct: 60 MDKGNSATSINRRLSALRTFYRFALSRKRVESDPVHMIKGPKRGKPLPQFLKENEMNALL 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + H + D R+ I+ Y G+R+SE + L ++ + L++ GK +K R Sbjct: 120 DTAM----HGESFYDVRDRTIIMTFYETGIRLSELIGLDDNDVDFQKGELKVTGKRNKQR 175 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ--LRRYLGL 256 I+P + A+ Y L + N L LF +G LN G RY+ Q L R L Sbjct: 176 IIPFGNELASALTIYMKLRD-EFIGNTSLALFVSNKGCRLN-GNQVRYLVQKNLSRVSTL 233 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRH+FAT +L++ L S++ +LGH LSTT+IYT+ + + IY Sbjct: 234 K-KRSPHVLRHTFATAMLNHEAGLESLKKLLGHASLSTTEIYTHTTFEQ----LKRIYSN 288 Query: 317 THP 319 HP Sbjct: 289 AHP 291 >gi|266620141|ref|ZP_06113076.1| tyrosine recombinase XerD [Clostridium hathewayi DSM 13479] gi|288868265|gb|EFD00564.1| tyrosine recombinase XerD [Clostridium hathewayi DSM 13479] Length = 323 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 85/290 (29%), Positives = 139/290 (47%), Gaps = 13/290 (4%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +++ +L +ER LS T+ +Y+ D +L E I +I F+ + Sbjct: 14 DFINSLSLERNLSGKTIYAYKSDLLCMFTWLNENKYESINPHSISDY-------FLYLQN 66 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI-LNMRNLKKSNSLPRALNEKQALTLV 138 +K+ RS++R IK F Y+ K E + + R + SLPR L++ + L+ Sbjct: 67 NKKLSPRSIRRKYVSIKQFFHYINVEKGVNEIFMKFSSRKFQLPKSLPRTLSKMEVNQLI 126 Query: 139 DNVLL-HTSHETKW---IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 V + S T + + R+ I+ +L+ GLRI E +L ++ +++ I GKG Sbjct: 127 ATVSKEYKSASTDFYRRLCLRDMCIIEILFCLGLRIGEVAALNIEDYDSGEASFLIHGKG 186 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 +K R++ + L+ + + NL LF GK L+ + + R Sbjct: 187 NKERMLFISSITVNQKLQKWIRTRQEFNLQDD-ALFVNKYGKRLSIYSIENLFYKYRELA 245 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + T H LRHSFAT LL+NG D+R++Q ILGH + TTQIYT V+ K Sbjct: 246 HINSEATPHYLRHSFATQLLNNGADIRAVQDILGHSSIVTTQIYTEVSLK 295 >gi|308235890|ref|ZP_07666627.1| site-specific tyrosine recombinase XerC [Gardnerella vaginalis ATCC 14018] gi|311115014|ref|YP_003986235.1| tyrosine recombinase XerC [Gardnerella vaginalis ATCC 14019] gi|310946508|gb|ADP39212.1| tyrosine recombinase XerC [Gardnerella vaginalis ATCC 14019] Length = 357 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 84/324 (25%), Positives = 141/324 (43%), Gaps = 52/324 (16%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLA---FYTEEKITIQTIRQLSYTEIRAFISK 77 ++ L +GL TL++Y D Q L + ++ +RQ Y +++K Sbjct: 29 YIDYLRSNKGLGSRTLRAYRVDVLQCLEWCGVNDLSDLNSVSTSVLRQWMY-----WLNK 83 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 + SL R + ++ F + + + + + K N LP L+E QA L Sbjct: 84 NHARS----SLARKVVAVRGFFAWTTHVGLISANPAQILNTPKIVNELPTVLDEAQAEKL 139 Query: 138 VD-----------------------------------NVLLHTSHETKWIDA-RNSAILY 161 +D + T + +++ A RN+AIL Sbjct: 140 LDCAEDRSEDYAVDKSPATEHQENTPLKSQIKMRIKSKIKSQTKTKQEYVIALRNAAILE 199 Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221 LLY G+R+ E L Q++ + T+++ GKG+K R+VP KA ++ D L Sbjct: 200 LLYATGMRVGELTGLNVQDMDFENHTVKVTGKGNKQRVVPFGVPAAKACKKWLDCGRSAL 259 Query: 222 ---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278 + LF G+R K ++ + + + + +P H LRHS ATH+L+ G Sbjct: 260 QEKSAASSQALFLGVRAKRIDQRIVRSIVHEAAAAANVP-DVAPHALRHSAATHMLNGGA 318 Query: 279 DLRSIQSILGHFRLSTTQIYTNVN 302 DLR +Q +LGH L+TTQ YT+V+ Sbjct: 319 DLREVQELLGHSSLNTTQRYTHVS 342 >gi|307297306|ref|ZP_07577112.1| integrase family protein [Thermotogales bacterium mesG1.Ag.4.2] gi|306916566|gb|EFN46948.1| integrase family protein [Thermotogales bacterium mesG1.Ag.4.2] Length = 299 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 80/300 (26%), Positives = 142/300 (47%), Gaps = 33/300 (11%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + +N+E R +S T+ +Y D F +FL E I +++++ +I F+ + Sbjct: 8 ERFKENMEFVRNMSSNTVAAYLSDLHHFELFL---NERGIDYKSVKR---KDIELFVKEY 61 Query: 79 RTQKIGDR-----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 K + ++ R+LS I+SF +L ++ ++N K +P + + Sbjct: 62 SQGKYSRKRPSATTVARNLSTIRSFYTFLYISGTVSKVPTELIKNPKTRRRIPDYITHDE 121 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRI-Q 191 + ++ +S + + RN AI+ ++Y CGLR+SE L ++ M + +RI Sbjct: 122 VMEIL------SSFRSTNLGKRNKAIVAIMYFCGLRVSEVCKLRLGDLRMGNSPAVRIMS 175 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-------FRGIRGKPLNPGVFQ 244 GKG++ R VP+ V + EY L + + P+ F G RG+P+ V Sbjct: 176 GKGNRDREVPMNDQVLSIVKEY-------LQIRREFPMSEYEDHVFIGTRGEPMARNVIP 228 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + + +Y+ H RHSFAT LL G ++ +Q +LGH LSTT IY ++ K Sbjct: 229 KVLNTQVKYVYPEKRVHPHLFRHSFATQLLQKGASIKIVQELLGHANLSTTSIYLHITDK 288 >gi|87199919|ref|YP_497176.1| phage integrase [Novosphingobium aromaticivorans DSM 12444] gi|87135600|gb|ABD26342.1| phage integrase [Novosphingobium aromaticivorans DSM 12444] Length = 293 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 95/313 (30%), Positives = 142/313 (45%), Gaps = 45/313 (14%) Query: 19 QNWLQNLEIERGLSKLTLQSYECD---TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 +N+L L +RG + TL +Y D + + LA E + I +++++ A Sbjct: 10 ENFLAMLAAQRGAAANTLAAYRRDLAGAAEVIGPLATAGREDLARLAI---AWSDLAA-- 64 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 SL R S ++ F +L + E + K LPR L+ Q Sbjct: 65 ----------SSLARKSSALRQFYGFLVDEGMREEDPSSALPRPKTRRPLPRLLDHGQV- 113 Query: 136 TLVDNVLLHTSHETKWIDARNS--------AILYLLYGCGLRISEALSLTPQNIMDDQST 187 L T+ E DAR+ A+L LLYG GLR +E +SL I D Sbjct: 114 ----EALFRTAEE----DARSGTPEAARMLALLELLYGSGLRATELVSLPLAAIPRDAPL 165 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 L I GKG R+VP+ +A+ ++ L P RG G +FQ + Sbjct: 166 LTITGKGGVQRMVPVSARATRALADW--LVARGKGGRFVFPSPRG--GHLSRVRLFQ-LL 220 Query: 248 RQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 R L GL P + H LRH+FATHLL G DLR +Q++LGH ++TTQIYT+V++ Sbjct: 221 RDLALRAGLDPEKVSPHVLRHAFATHLLEGGADLRVLQTLLGHADIATTQIYTHVDAAR- 279 Query: 307 GDWMMEIYDQTHP 319 ++ + ++ HP Sbjct: 280 ---LVTLVNERHP 289 >gi|295396788|ref|ZP_06806923.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030] gi|294970372|gb|EFG46312.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030] Length = 312 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 89/320 (27%), Positives = 152/320 (47%), Gaps = 27/320 (8%) Query: 6 LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65 LP+ + +L++ +L L++ERG S+ T+ +Y D +++ +LA + + Sbjct: 11 LPDAPA-DLIRPVSEYLTYLQLERGSSRNTVDAYARDLAKYVTYLA-----DTGVNDLGS 64 Query: 66 LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 ++ + FI Q S R ++ L + + S +++ + L Sbjct: 65 VTSEHVAGFIEHIAHQNFAVTSRARITVAVRR-LHHFTAGETGGTSPADDVQPPTDTMRL 123 Query: 126 PRALNEKQALTLVDNV--LLHTSHETKWIDA---RNSAILYLLYGCGLRISEALSLTPQN 180 P+AL+ VD V ++H + + + D R A++ LY G RISEA+ + + Sbjct: 124 PKALS-------VDQVSRIIHAAGDPQSADPAQLRAVALIEFLYATGARISEAVGVDRDD 176 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLN 239 + D R+ GKG+K R+VPL +A+ + L P +F RG L+ Sbjct: 177 VDVDAGIARVYGKGNKERLVPLGSHAIEALGAW--LTRGRPAWAASSPAVFLNARGGRLS 234 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 +++ +P TAH+LRHS ATHL+ G D+R +Q +LGH ++TTQIYT Sbjct: 235 RQSAWAIVKKAAEIADVP-RVTAHSLRHSCATHLVEGGADIRIVQELLGHSSVTTTQIYT 293 Query: 300 NVNSKNGGDWMMEIYDQTHP 319 V S+ + E+Y THP Sbjct: 294 QVTSQA----LKEVYASTHP 309 >gi|289707069|ref|ZP_06503398.1| site-specific tyrosine recombinase XerC [Micrococcus luteus SK58] gi|289556207|gb|EFD49569.1| site-specific tyrosine recombinase XerC [Micrococcus luteus SK58] Length = 373 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 80/270 (29%), Positives = 128/270 (47%), Gaps = 26/270 (9%) Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 + + +R +++ + +L R ++ +++F +L++ + + L +R+ + + Sbjct: 113 RAGHRGLRGWLAAMSGAGLARATLARRVAAVRTFTAWLRREGLRADDPALRLRSPRPEGT 172 Query: 125 LPRALNEKQALTL-------VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 LP L E+QA L VD + R++A+L LLY G R++E +L Sbjct: 173 LPHVLQEQQARRLLAAAQERVDAAAAGDDPVAHALALRDAALLELLYATGARVAELSALD 232 Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGK 236 ++ + +R+ GKGD+ R VP +A+ + L L P LF G RG Sbjct: 233 VDDLEAGRGVVRLTGKGDRQRTVPYGAPAGRALQAWQRLGRPRLARPDSGPALFLGARGG 292 Query: 237 PLNPGVFQRYIRQLR-------RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289 L +RQ R LG + H LRH+ ATHLL G DLRS+Q +LGH Sbjct: 293 RLG-------VRQARTVVDRALEGLGDTAARGPHALRHTAATHLLDGGADLRSVQELLGH 345 Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 L TTQ+YT+V+ D + E Y Q HP Sbjct: 346 ASLRTTQVYTHVSI----DRLREGYRQAHP 371 >gi|150026173|ref|YP_001296999.1| integrase/recombinase [Flavobacterium psychrophilum JIP02/86] gi|149772714|emb|CAL44197.1| Integrase/recombinase [Flavobacterium psychrophilum JIP02/86] Length = 347 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/216 (35%), Positives = 111/216 (51%), Gaps = 22/216 (10%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 ++ IK + K +K+ KI + + K+S LP L+ K+ + L+ + H+T Sbjct: 141 VNAIKLYFKTIKEVKIEVD----KIHRPKRSKLLPNVLS-KEEIKLILEAHSNIKHKT-- 193 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI 210 +L L+Y CGLR SE L L P +I + + I Q KG K RI PL P + + Sbjct: 194 -------MLSLIYSCGLRRSELLHLKPTDIDSKRGIVIIRQSKGKKDRIAPLSPKILVML 246 Query: 211 LEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 EYY N + LF G I G+ + Q ++Q + + H LRHS+ Sbjct: 247 REYYS------NYKPKSWLFEGQIPGETYSEKSLQNVLKQALEKAKIAKPVSLHWLRHSY 300 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 ATHLL +G DLR IQ +LGH TT+IYT+V++KN Sbjct: 301 ATHLLESGTDLRYIQELLGHSSTKTTEIYTHVSTKN 336 >gi|160934246|ref|ZP_02081633.1| hypothetical protein CLOLEP_03117 [Clostridium leptum DSM 753] gi|156866919|gb|EDO60291.1| hypothetical protein CLOLEP_03117 [Clostridium leptum DSM 753] Length = 314 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 88/303 (29%), Positives = 153/303 (50%), Gaps = 29/303 (9%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFL-------AFYTE------EKITIQTIRQLSYTEI 71 +E +G S T+Q Y D R F ++ A TE + ITI + +S T++ Sbjct: 1 METIKGKSPKTVQEYFFDLRTFFRYMKIKKNLTAADTEFSEIPIDDITIDFLSMVSLTDV 60 Query: 72 RAF---ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN-ILNMRNLKKSNSLPR 127 F ++ R K R+ R + +++F +YL + + N + + K+ SLP+ Sbjct: 61 YEFMNFVTIERENKNAARA--RKSASLRAFFQYLTNKTHQLKENPVQELETPKQKKSLPK 118 Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 L +Q++ L++ V R+ IL L CGLR++E + L +I D T Sbjct: 119 YLTLEQSIDLLNAV-------DGPFRERDYCILTLFLNCGLRLAELVGLNLNDIRPDH-T 170 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 +R+ GKG+K R++ L + +KAI EY + P ++++ + LF K L Q + Sbjct: 171 MRVTGKGNKERMIYLNSACQKAIEEYLKVRPNPMSVSDKKALFISHLNKRLGRQAVQNIV 230 Query: 248 RQLRRYLGLP-LSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNSKN 305 ++ + +GL +AH LRH+ AT + +G D+R ++ ILGH L TT+IYT+++++ Sbjct: 231 QKYLKKIGLDGQGYSAHKLRHTAATLMYQHGNVDIRVLKDILGHQNLGTTEIYTHLSNQQ 290 Query: 306 GGD 308 D Sbjct: 291 MED 293 >gi|291527468|emb|CBK93054.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] Length = 308 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 86/303 (28%), Positives = 149/303 (49%), Gaps = 27/303 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +N+++ ++ L TL++Y+ D RQF E+I+I I ++ + + ++I+ Sbjct: 9 KNYIEYCTAQKRLDTKTLKAYKIDLRQF--------SEQISITEIEYITTSVLESYITNL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN-----LKKSNSLPRALNEKQ 133 Q+ +S+KR ++ IK+F YL+ + I ILN N ++ LP+ + K Sbjct: 61 H-QQYSPKSVKRKIASIKAFFHYLEYKDII----ILNPFNKLQIKFREPVILPKTIPLK- 114 Query: 134 ALTLVDNVLLHTSHET-----KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 L ++ N H+T K R+ A+L LL+ G+RISE S+ QN+ + + Sbjct: 115 TLEVLFNAAYAKYHKTTSPCQKRKTLRDIAVLELLFATGIRISELCSILLQNMDLQNNII 174 Query: 189 RIQGKGDKIRIVPLL-PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 I GKG K R++ + P+V + +YY + ++ F G L+ + I Sbjct: 175 LIHGKGSKERLIHICDPNVLNILNQYYT--EYYSQISACGYFFVNNTGNRLSDQSVRDMI 232 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 + R + T H RH+FAT LL D+R IQ++LGH ++ T+IYT+V Sbjct: 233 NKYCRIADIDYHITPHMFRHTFATQLLEENVDIRYIQTMLGHSSINVTEIYTHVTISKQK 292 Query: 308 DWM 310 D + Sbjct: 293 DIL 295 >gi|86747659|ref|YP_484155.1| tyrosine recombinase XerD [Rhodopseudomonas palustris HaA2] gi|86570687|gb|ABD05244.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris HaA2] Length = 347 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 87/313 (27%), Positives = 136/313 (43%), Gaps = 24/313 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L + E+G S TL +Y D L L+ Y + ++I +R +++ T Sbjct: 41 FLDMIAAEQGASANTLDAYRRD----LADLSHYLGRRR--KSIASADTEALRGYLADLDT 94 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL---NEKQALTL 137 + S+ R LS ++ ++L +I + + K+ LP+ L + + L Sbjct: 95 RGFASTSVARRLSALRHLFRFLLSERIRVDDPAAILSGPKRGRGLPKVLSIADVDRLLGC 154 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 AR +L +LY GLR+SE ++L D + ++GKGDK Sbjct: 155 ARQEADAAEGAAGLRAARLYCLLEVLYATGLRVSELVALPRTAARGDARMIVVRGKGDKE 214 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV----------FQRYI 247 R+VPL S + A+ Y K L P F R + Sbjct: 215 RLVPLNGSSKAAMTRYLATAAAAEKAAAGGKKTAAPASKWLFPSFGESGHLTRQHFARDL 274 Query: 248 RQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 ++L GLP + H LRH+FA+HLL NG DLR +Q++LGH +STTQIYT+V Sbjct: 275 KELAARAGLPPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVE--- 331 Query: 307 GDWMMEIYDQTHP 319 D + + HP Sbjct: 332 -DRLKSLVRDLHP 343 >gi|115522171|ref|YP_779082.1| tyrosine recombinase XerD [Rhodopseudomonas palustris BisA53] gi|115516118|gb|ABJ04102.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris BisA53] Length = 326 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 84/309 (27%), Positives = 138/309 (44%), Gaps = 43/309 (13%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L E+G K TL +Y D FL ++ +RA++ Sbjct: 15 FLDMLAAEQGAGKNTLDAYRSDLADLAAFLGHAK------TSLSGADTHALRAYLIDLDA 68 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + S+ R LS ++ ++L ++ + + K+ LP+ ++ + VD Sbjct: 69 RGYKSASVARKLSALRHLFRFLLTERVRADDPAAILSGPKRGRGLPKVMS----IADVDR 124 Query: 141 VLLHTSHETKWID--------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 +L H + AR +L +LY GLR+SE +SL D + ++G Sbjct: 125 LLEHAKRLAEAPGRAGEQVRAARLYCLLEVLYATGLRVSELVSLPVSAARRDARMIVVRG 184 Query: 193 KGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGV--------- 242 KG+K R+VPL S ++A+ Y + + D + + +G + KP Sbjct: 185 KGNKERLVPLNESSKRAMAAYLEAIAAQDRERDKE----KG-KAKPGKAAAQKWLFPSSG 239 Query: 243 ---------FQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 F R +++L GL + H LRH+FA+HLL NG DLR +Q++LGH + Sbjct: 240 ESGHLTRQHFARELKELAAAAGLSARLISPHVLRHAFASHLLHNGADLRIVQTLLGHTDI 299 Query: 293 STTQIYTNV 301 STTQIYT+V Sbjct: 300 STTQIYTHV 308 >gi|255020691|ref|ZP_05292753.1| Tyrosine recombinase xerC [Acidithiobacillus caldus ATCC 51756] gi|254969927|gb|EET27427.1| Tyrosine recombinase xerC [Acidithiobacillus caldus ATCC 51756] Length = 317 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 85/290 (29%), Positives = 136/290 (46%), Gaps = 20/290 (6%) Query: 38 SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97 +Y D + FLA + I I + +R FI + R + + RSL+R + +++ Sbjct: 25 AYRADLHLWQEFLA-----EQGIDHIESVQAEHLRHFIRRERARGVAIRSLRRRFAALRA 79 Query: 98 FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH-------TSHETK 150 ++L+++ +R K P L QA L+D + +T Sbjct: 80 LYRHLQRQHPQLPDPSRYLRLPKLEQHFPDWLTVDQAQQLLDGPTSSDGGPAQPATAQTH 139 Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210 + R+ A++ LLY LR+SE +++ ++ S LR+ GKG K R+VP+ V Sbjct: 140 FAMTRDRAMMELLYSSALRVSELVAIDLDHLDLAGSWLRVFGKGGKERMVPV-GQVALTA 198 Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPLSTTAHTLRHSF 269 L Y + LF RG L+ QR + R LG L HTLRHS Sbjct: 199 LRTYLPARAAVAAAEVKALFLNQRGGRLSVRSVQRIVDGWGRDRLGQALHP--HTLRHSA 256 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 A+HLL + GDLR++Q LGH ++TT IYT+++ ++ + +YD HP Sbjct: 257 ASHLLQSSGDLRAVQDFLGHAGIATTAIYTHLDHQH----LAAVYDSAHP 302 >gi|308125862|ref|ZP_07663544.1| tyrosine recombinase XerC [Vibrio parahaemolyticus K5030] gi|308111049|gb|EFO48589.1| tyrosine recombinase XerC [Vibrio parahaemolyticus K5030] Length = 266 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 73/269 (27%), Positives = 136/269 (50%), Gaps = 11/269 (4%) Query: 57 KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116 ++ ++ Q+ +R K + + SL LS ++SF +L R + + + Sbjct: 7 EMGLKDWSQVDAGWVRQLAGKGMREGMKASSLATRLSSLRSFFDFLILRGEMSANPAKGV 66 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 +K LP+ L+ + N LL + + + R+ A++ L+YG GLR++E +S+ Sbjct: 67 SAPRKKRPLPKNLDVDEV-----NQLLEVNEDDP-LAIRDRAMMELMYGAGLRLAELVSV 120 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 +++ LR+ GKGDK R VP + + ++ + DL + LF G Sbjct: 121 DVRDVQLRSGELRVIGKGDKERKVPFSGMATEWVGKWLRVRG-DLAAPGEPALFVSKLGT 179 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 ++ Q+ + + + + + H LRHSFATH+L + +LR++Q +LGH +STTQ Sbjct: 180 RISHRSVQKRMAEWGQKQSVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQ 239 Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSITQKD 325 IYT+++ ++ + + YDQ HP +K+ Sbjct: 240 IYTHLDFQH----LAQAYDQAHPRARKKN 264 >gi|288556218|ref|YP_003428153.1| integrase family protein [Bacillus pseudofirmus OF4] gi|288547378|gb|ADC51261.1| integrase family protein [Bacillus pseudofirmus OF4] Length = 362 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 96/333 (28%), Positives = 160/333 (48%), Gaps = 31/333 (9%) Query: 1 MEGNNLPEIVSFELLKERQN--WLQNLEIER---GLSKLTLQSYECDTRQFLIFLAFYTE 55 ++ + LPE + + K Q ++Q I R G SK T+Q Y D F ++ +E Sbjct: 16 LKTDFLPEAIKQQYRKIDQLPLFIQQYLISRVSLGYSKQTIQRYIYDYHYFFHYVKRVSE 75 Query: 56 E------KITIQTIRQLSYTEIRAFISKRRTQKIGD-RSLKRSLSGIKSFLKYLKKRKIT 108 + +T++ Q+ I +I+ + + R++ R +S ++S YL K+ T Sbjct: 76 DPSFQPAAVTLKDFLQIEKAAIEHYITYLSLEVENEPRTINRKISALQSLFDYLVKKGET 135 Query: 109 TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS---HETKWID---ARNSAILYL 162 T + +L + K P L +A L+ V +S + K+ + AR+ A++YL Sbjct: 136 TTNPVLGVERPKVGKRDPVFLTINEAQLLLKAVKDTSSLSFRQKKYAEKLLARDYAVIYL 195 Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF--- 219 L GLRISE ++ ++ +++ L++QGKG+K R +PL + Y D P Sbjct: 196 LISSGLRISELANVKMKDFDKEENILKVQGKGNKERSIPLSYETIDVLTYYLDSLPIKSR 255 Query: 220 ----DLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQLRRYLGLPLS-----TTAHTLRHSF 269 + +L I K + Q+ I RQL R S TAH LRHSF Sbjct: 256 PKQSEDHLFIGYDFQSQEYTKQVTVSALQKMIQRQLHRAKQYAPSLQHKTITAHKLRHSF 315 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 AT L++ G D+ ++QS+LGH ++TTQ+Y +V Sbjct: 316 ATALVAKGVDVLTVQSLLGHESVATTQVYAHVQ 348 >gi|163741192|ref|ZP_02148584.1| tyrosine recombinase XerD [Phaeobacter gallaeciensis 2.10] gi|161385545|gb|EDQ09922.1| tyrosine recombinase XerD [Phaeobacter gallaeciensis 2.10] Length = 337 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 121/244 (49%), Gaps = 12/244 (4%) Query: 67 SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126 S +I A++ + + + R LS IK ++ +++ + ++ + +LP Sbjct: 62 SRDDIEAYLIACDAEGLARATRARRLSAIKQIYRFAFDEGWRSDNPAIQIKGPGRQKALP 121 Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 + L + L+D + + + RN+ ++ LLY G+R+SE + L D Sbjct: 122 KTLEVIEVDRLLDAARQSGRNLSDRL--RNTCMMELLYATGMRVSELVGLPVAAARGDPR 179 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLP---LF--RGIRGKPL 238 L + GKG K R+VPL P R A+ + D P LF RG G L Sbjct: 180 MLLVLGKGGKERMVPLSPPARDALAAWLTTRDAAEEAAVAKGAAPSRFLFPSRGKSGH-L 238 Query: 239 NPGVFQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 F I++ GLP + + HTLRH+FATHLL+NG DLR+IQ++LGH ++TT+I Sbjct: 239 TRHRFYLLIKEFAVAGGLPPEAVSPHTLRHAFATHLLTNGADLRAIQALLGHADIATTEI 298 Query: 298 YTNV 301 YT+V Sbjct: 299 YTHV 302 >gi|83749114|ref|ZP_00946119.1| Integrase/recombinase (XerD/RipX family) [Ralstonia solanacearum UW551] gi|207721732|ref|YP_002252171.1| integrase/recombinase protein [Ralstonia solanacearum MolK2] gi|207742496|ref|YP_002258888.1| integrase/recombinase protein [Ralstonia solanacearum IPO1609] gi|83724235|gb|EAP71408.1| Integrase/recombinase (XerD/RipX family) [Ralstonia solanacearum UW551] gi|206586895|emb|CAQ17480.1| integrase/recombinase protein [Ralstonia solanacearum MolK2] gi|206593887|emb|CAQ60814.1| integrase/recombinase protein [Ralstonia solanacearum IPO1609] Length = 308 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 87/305 (28%), Positives = 144/305 (47%), Gaps = 22/305 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q + L +E GL++ TL +Y D + +LA + I Q ++ + + R Sbjct: 20 QRFCDALWLEDGLARNTLDAYRRDLTLYAQWLAGRG------KAIDQTEDDDLADYFAAR 73 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + +R + K F ++ + + + K+ +P+ L+E Q L+ Sbjct: 74 HEESRASTANRRR-TVFKRFFQWALREHVVGADPSRLLSTAKQPPRIPKTLSEAQVEALI 132 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGDKI 197 + T + R+ A++ L+Y GLR+SE ++L + ++ +R I GKG K Sbjct: 133 AAPDVDTP-----LGLRDRAMIELMYASGLRVSEIVALKTVEVGLNEGVVRVIGGKGGKD 187 Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ--LRRYL 254 R+VP + Y D L LF RG+ + F I++ LR + Sbjct: 188 RLVPFGAEAGDWLRRYLRDGRTALLGKRTADALFVTARGEGMTRQAFWHLIKRYALRADI 247 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 PLS HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V + + ++ Sbjct: 248 HAPLSP--HTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARER----LRTLH 301 Query: 315 DQTHP 319 Q HP Sbjct: 302 AQHHP 306 >gi|94268395|ref|ZP_01291163.1| Phage integrase [delta proteobacterium MLMS-1] gi|93451622|gb|EAT02417.1| Phage integrase [delta proteobacterium MLMS-1] Length = 177 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 66/181 (36%), Positives = 89/181 (49%), Gaps = 23/181 (12%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213 AR+ AIL LLY GLR+SE L + +R+ GKG+K R+VP+ + AI Y Sbjct: 1 ARDRAILELLYATGLRVSELAGLDLAQLDLAXGMVRVMGKGNKERLVPMGTAAVAAIEAY 60 Query: 214 YDLCPFDLNLNIQL---------------PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 F + ++ PL RG L +R ++ G+ Sbjct: 61 L----FQRQVLLRQTAGQQKEGKKARGADPLLVNSRGGRLTSRSIERLVKMYAERAGIAA 116 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + H LRHSFATHLL G DLR +Q +LGH LSTTQ YT++N D + +YDQ H Sbjct: 117 RVSPHALRHSFATHLLEMGADLRVVQELLGHASLSTTQRYTHLNL----DHLTAVYDQAH 172 Query: 319 P 319 P Sbjct: 173 P 173 >gi|313674963|ref|YP_004052959.1| tyrosine recombinase xerd [Marivirga tractuosa DSM 4126] gi|312941661|gb|ADR20851.1| tyrosine recombinase XerD [Marivirga tractuosa DSM 4126] Length = 299 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 91/311 (29%), Positives = 148/311 (47%), Gaps = 24/311 (7%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 L E +N+LQ +ER L++ T+ +Y D + FL +Q +S T++ Sbjct: 6 FLTEYKNYLQ---LERSLAENTVAAYVHDVIKLKQFLDISNRNVDPLQ----VSSTDLHN 58 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 F+ + + R +SGIK F KYL I ++ + K LP L+ + Sbjct: 59 FLEYVNELGMTVHTQARVVSGIKGFYKYLVFEDIIEDNPAELLEAPKLGRKLPDVLSFDE 118 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 ++ ++ T++ R+ +L +LY GLR++E SL N D LRI GK Sbjct: 119 IEQIISSIDRSTAN-----GQRDLTMLEVLYSSGLRVTELTSLKISNTYFDLGFLRIIGK 173 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR-----YIR 248 G K R+VP+ S K + Y L ++ + P R I G R I+ Sbjct: 174 GSKERLVPMGKSAAKQLKIY--LTEVRVHQKPK-PEARDIVFLNRFGGAISRISVFTMIK 230 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 + G+ + + HT RHSFATHL+ G DLR++Q +LGH ++TT+IYT+++ D Sbjct: 231 KQCVMAGIRKNVSPHTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTHLDR----D 286 Query: 309 WMMEIYDQTHP 319 ++ + + HP Sbjct: 287 YLSQTLKEFHP 297 >gi|269961534|ref|ZP_06175897.1| tyrosine recombinase XerC [Vibrio harveyi 1DA3] gi|269833763|gb|EEZ87859.1| tyrosine recombinase XerC [Vibrio harveyi 1DA3] Length = 269 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/269 (26%), Positives = 136/269 (50%), Gaps = 11/269 (4%) Query: 57 KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116 ++ ++ Q+ +R K + + SL LS ++SF +L R + + + Sbjct: 7 EMGLKDWSQVDAGWVRQLAGKGMREGMKASSLATRLSSLRSFFDFLILRGEMSANPAKGV 66 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 +K LP+ L+ + N LL + + + R+ A++ L+YG GLR++E +S+ Sbjct: 67 SAPRKKRPLPKNLDVDEV-----NQLLEVNEDDP-LAVRDRAMMELMYGAGLRLAELVSV 120 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 +++ LR+ GKGDK R VP + + ++ + DL + LF G Sbjct: 121 DVRDVQLRSGELRVIGKGDKERKVPFSGMATEWVGKWLRVRG-DLAAPGEPALFVSKLGT 179 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 ++ Q+ + + + + + H LRHSFATH+L + +LR++Q +LGH +STTQ Sbjct: 180 RISHRSVQKRMAEWGQKQSVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQ 239 Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSITQKD 325 IYT+++ ++ + + YDQ HP +++ Sbjct: 240 IYTHLDFQH----LAQAYDQAHPRARKRN 264 >gi|162456070|ref|YP_001618437.1| integrase/recombinase [Sorangium cellulosum 'So ce 56'] gi|161166652|emb|CAN97957.1| integrase/recombinase [Sorangium cellulosum 'So ce 56'] Length = 358 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 117/243 (48%), Gaps = 22/243 (9%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S+ R + ++ L+YL++R ++ + K LP L+ A +++ T+ Sbjct: 120 SIARKVGAARALLRYLERRGEVDKNAAAQLALPKVRRPLPTFLDVDAAAEVMEIPGAETA 179 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLL 203 R+ A+L LYG GLR+SE L ++ D++ +R+ GKGDK RIVPL Sbjct: 180 EGL-----RDRAMLETLYGAGLRVSELCGLDLTHVDRRPADRAAVRVVGKGDKERIVPLG 234 Query: 204 PSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 AI Y + L LF RG + +R ++RY L Sbjct: 235 SHALAAIERYLERRDELADPTTGARDPRALFLSRRGARIG---VRRVQALVQRYGALGAG 291 Query: 260 TT---AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 H LRH+ ATHLL G DLR+IQ +LGH L+TTQ YT+V+ D ++++YD Sbjct: 292 RADLHPHALRHTCATHLLDGGADLRAIQKLLGHASLATTQRYTHVSI----DHLLKVYDA 347 Query: 317 THP 319 HP Sbjct: 348 AHP 350 >gi|289644810|ref|ZP_06476863.1| integrase family protein [Frankia symbiont of Datisca glomerata] gi|289505366|gb|EFD26412.1| integrase family protein [Frankia symbiont of Datisca glomerata] Length = 404 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 85/319 (26%), Positives = 143/319 (44%), Gaps = 36/319 (11%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L++L ER S T+++Y D L L Y +E + + + +R +++ R Sbjct: 100 YLRHLATERDRSPETVRAYRAD----LAHLRGYAQE-VGLDGPTGVDLGVLRGWLAGMRA 154 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV-- 138 + +L R S + F + ++ + ++ SLP L QA L+ Sbjct: 155 RGAAATTLARRASVARGFSAFAARQGWLAADVAERLAGPRRPASLPTVLTAAQAWELLAA 214 Query: 139 ----------DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 ++ + R+ A+L LLY R+SE L ++ D++ + Sbjct: 215 RPRPLPDGGDPPAAGQSAAGQSAVVVRDDAVLELLYATATRVSELCGLDIDDVDDERRLV 274 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 R++GKG + R VP ++A+ + P LF G+RG+ L+P Sbjct: 275 RVRGKGGRERAVPFGVPAQRALRNWLAAGRPTLAVAGSGRALFLGVRGRRLDP------- 327 Query: 248 RQLRRYLGLPLST-------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 R +RR L +T + H +RHS ATHLL+ G DLRS+Q LGH +TTQIYT+ Sbjct: 328 RTVRRILAARTATADGIGPISPHGIRHSAATHLLAGGADLRSVQEFLGHASPATTQIYTH 387 Query: 301 VNSKNGGDWMMEIYDQTHP 319 V + + ++Q+HP Sbjct: 388 VTPQR----LRAAFEQSHP 402 >gi|254561653|ref|YP_003068748.1| tyrosine recombinase xerD [Methylobacterium extorquens DM4] gi|254268931|emb|CAX24892.1| Tyrosine recombinase xerD [Methylobacterium extorquens DM4] Length = 328 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 89/304 (29%), Positives = 138/304 (45%), Gaps = 46/304 (15%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +L L ERG + TL +Y D +L +LA + Q ++RA+I+ Sbjct: 17 QLFLDMLAAERGAAANTLAAYRRDLDDYLGYLAQGGIDPEEAQA------DQVRAYIASL 70 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + S R LS I+ F ++L + + +++ LP+ L+ + V Sbjct: 71 EPRGLKASSAARRLSCIRGFHRFLYAEGYSETDPTAPVAAPRRAKGLPKVLSVAE----V 126 Query: 139 DNVLLHTSHE------TKWIDARNSA----ILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 D LL T+ E +AR++A +L LLY GLR+SE ++L + L Sbjct: 127 DR-LLATARERVEAAGDDRAEARSAARMLCLLELLYATGLRVSELVALPRSAAATRERYL 185 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG------- 241 ++GKG + R+VPL R+A+ + + G L P Sbjct: 186 VVKGKGGRERLVPLTDLAREAMRTHV--------------AYLTAEGAWLFPAESESGHL 231 Query: 242 ---VFQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 F R ++ GL + H LRH+FA+HLL NG DLR +Q +LGH +STTQI Sbjct: 232 TRQAFARDLKTAAAAAGLRTDRVSPHVLRHAFASHLLQNGADLRIVQELLGHADISTTQI 291 Query: 298 YTNV 301 YT+V Sbjct: 292 YTHV 295 >gi|153810458|ref|ZP_01963126.1| hypothetical protein RUMOBE_00839 [Ruminococcus obeum ATCC 29174] gi|149833637|gb|EDM88718.1| hypothetical protein RUMOBE_00839 [Ruminococcus obeum ATCC 29174] Length = 296 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 81/302 (26%), Positives = 153/302 (50%), Gaps = 16/302 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +N++ + + S+ T SYE D ++ LA Y + I +++ T+++ ++ + Sbjct: 8 ENFIAYMREAKKASQNTEISYERDLKK----LARYLRNQ-KIMDFSEVTKTDLQGYLKEL 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + + ++ R+++ I++ Y+ + E ++ K +P L+ ++ L+ Sbjct: 63 QKENLALSTISRNIASIRALYHYMIRTGKMQEDPSETLKPPKLEKKMPEILSVEEVDRLL 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L+T K I R++A++ L+Y G+R+SE + L +I + Q I +K R Sbjct: 123 KQPNLNTP---KGI--RDNAMMELMYATGMRVSELIHLQITDI-NLQMGYVICHDSEKER 176 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 I+P+ R AIL+Y + F + + LF GK ++ F + ++ G+ Sbjct: 177 IIPIGNVSRNAILQYMEHSRGFFVKNKKESSLFTNCSGKSMSRQGFWKVLKGYAVDAGIH 236 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T HTLRHSFA H+L NG D++S+Q +LGH +S+TQIY +N M ++Y + Sbjct: 237 RDITPHTLRHSFAVHMLQNGADVKSVQEMLGHSDISSTQIYLGMNVAR----MRDVYMKA 292 Query: 318 HP 319 HP Sbjct: 293 HP 294 >gi|310658549|ref|YP_003936270.1| site-specific tyrosine recombinase xerc [Clostridium sticklandii DSM 519] gi|308825327|emb|CBH21365.1| putative site-specific tyrosine recombinase XerC [Clostridium sticklandii] Length = 308 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 93/303 (30%), Positives = 156/303 (51%), Gaps = 37/303 (12%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L + +ER SK T+ SY D R L Y +E+ +I L+ IR FI R Sbjct: 18 FLAYMTVERNASKFTISSYTSDFR----ILEEYLKERNMKVSIETLNVATIRTFIHFLRL 73 Query: 81 QK-IGDRSLKRSLSGIKSFLKYLKKRK-ITTESNILN-MRNLKKSNSLPRALNEKQALTL 137 +K + +++R + + SF K+L + + I + N ++ +R KK LP L+EK+ TL Sbjct: 74 EKEYTNETIRRKIYALGSFFKFLVENEYIGMDKNPMSKIRAPKKEEKLPIYLSEKEIRTL 133 Query: 138 VDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGD 195 +D ++ +T DA R+ AI+ L GLR E ++L +++ Q T+++ GKG Sbjct: 134 LDTIM-----KTGGKDAIRDKAIISLFAMTGLRRMELINLNWEDVDFGQKTIKVTMGKGK 188 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLN----PGVFQRY 246 K RI+P+ ++ + +L Y +N LP LF K +N +FQ+Y Sbjct: 189 KQRILPMPETLYQDLLAY---------MNNSLPITNTALFITSNNKRVNFRGMNNLFQKY 239 Query: 247 IRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 I++ GL T H LRHS+A+ L+ G D+ ++ ++GH ++T+IY ++N N Sbjct: 240 IKRA----GLSGKGYTLHKLRHSYASLLVQQGVDISIVKELMGHSDFNSTKIYVHLNMNN 295 Query: 306 GGD 308 D Sbjct: 296 LRD 298 >gi|307718588|ref|YP_003874120.1| DNA integration/recombination/invertion protein [Spirochaeta thermophila DSM 6192] gi|306532313|gb|ADN01847.1| DNA integration/recombination/invertion protein [Spirochaeta thermophila DSM 6192] Length = 299 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 86/294 (29%), Positives = 143/294 (48%), Gaps = 35/294 (11%) Query: 24 NLEIERGLSKLTLQSYE--CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 +L E G S+LT ++Y C+ F A+ + + T+ + + E FI R + Sbjct: 15 HLVAELGRSRLTEETYLPLCER-----FCAWLECRGLEVGTVSRRTCEE---FIVDERGE 66 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 R++ + +S ++SF ++L + ++ + M + S +LPR L E++ L++ V Sbjct: 67 GKETRTIAKEMSALRSFFRFLVLEGVRPDNPLEEMDAPRISRTLPRVLEEEEVEILLEAV 126 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 R+ +L +LY CGLR+SEA L Q+I + ++++GKG+K R+VP Sbjct: 127 DTAPPE-----GMRDRCLLEVLYSCGLRVSEACGLDLQDIFLSEGFVKVRGKGEKERLVP 181 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF-QRYIRQLRR---YLGLP 257 + Y L+ P+ R VF R+ R+L R ++ L Sbjct: 182 FGKEAGHWMRRY---------LSEARPVLAARRPGSREQAVFLNRWGRRLSRKGAWIRLK 232 Query: 258 LSTTA-------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 A HT RH+ ATHLL G +LR +Q LGH +STTQIYT+V+++ Sbjct: 233 RLVAASGVDAKLHTFRHTCATHLLHGGANLREVQEFLGHADISTTQIYTHVDAR 286 >gi|170781199|ref|YP_001709531.1| tyrosine recombinase XerC [Clavibacter michiganensis subsp. sepedonicus] gi|169155767|emb|CAQ00888.1| tyrosine recombinase XerC [Clavibacter michiganensis subsp. sepedonicus] Length = 315 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 78/297 (26%), Positives = 134/297 (45%), Gaps = 11/297 (3%) Query: 24 NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83 +++ ERG + T+++Y D R A + + T L +R ++ + ++ Sbjct: 27 SMDRERGSAAHTVRAYSADLRDLAAHAA-----RQGVTTSAGLDLDVLRDWLWRGSQARL 81 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 +L R + ++ F +L + + ++ + + LPR L +Q ++ + L Sbjct: 82 APATLARRSAAVRGFGAWLLRTGRVDADPAVRLKAPRAGSHLPRVLAREQ-MSALLADLA 140 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 + + R+ A + LLY LR+SE L ++ + T+R+ GKGD+ R+VP Sbjct: 141 AQAADDDPAALRDLAAIELLYASALRVSELTGLDLGDVDASRLTVRVVGKGDRERVVPFG 200 Query: 204 PSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 +A+ Y P + LF G RG L + L + Sbjct: 201 VPAAEALDAYVTRGRPALVTPRTGTALFLGARGGRLGSRAVYGLVASLLADIPGSGPQGP 260 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRH+ ATHLL G DLR++Q +LGH L TTQIYT+V+ + + Y+ HP Sbjct: 261 HALRHTAATHLLDGGADLRTVQEMLGHASLGTTQIYTHVSIER----LRRSYEGAHP 313 >gi|294787717|ref|ZP_06752961.1| tyrosine recombinase XerD [Simonsiella muelleri ATCC 29453] gi|294484010|gb|EFG31693.1| tyrosine recombinase XerD [Simonsiella muelleri ATCC 29453] Length = 290 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 86/304 (28%), Positives = 146/304 (48%), Gaps = 30/304 (9%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLA-----FYTEEKITIQTIRQLSYTEIRAFIS 76 L++L ++ L+ TL++Y D + L F+T + + + + ++S Sbjct: 9 LEHLWLQERLAHNTLEAYRRDLSKLAQRLDTQHADFWTADAVALASA---------IYVS 59 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + RS RSLS K +L + + +++ K ++LP+ + E+Q Sbjct: 60 DEQP-----RSQARSLSACKRLYAWLVETGQREDDPTRDLKATKLPHTLPKIITEQQIEN 114 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L++ T H R+ A+L L+Y GLR++EA+ L I + + GKGDK Sbjct: 115 LLNMPDCDTPH-----GLRDKALLELMYATGLRVTEAVKLRMNEINLNHGLVNTIGKGDK 169 Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 RIVPL I +Y P L LF + + + ++Q +G Sbjct: 170 QRIVPLGEEAVHWIGQYVQFSRPQLLKGRRCDELFVSQKKSGMTRQLAWLIVKQYADLVG 229 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + S + H+LRH+FATHL+++G DLR++Q +LGH ++TTQIYT+V ++ + I Sbjct: 230 IK-SLSPHSLRHAFATHLVNHGADLRTVQMLLGHADIATTQIYTHVANER----LKSIVQ 284 Query: 316 QTHP 319 Q HP Sbjct: 285 QHHP 288 >gi|54026110|ref|YP_120352.1| site-specific tyrosine recombinase XerC [Nocardia farcinica IFM 10152] gi|54017618|dbj|BAD58988.1| putative recombinase [Nocardia farcinica IFM 10152] Length = 307 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 89/320 (27%), Positives = 150/320 (46%), Gaps = 16/320 (5%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 MEG LPE ++ LL E + ++L + + S T+++Y D R L L YT Sbjct: 1 MEG--LPEDLT-ALLAE---YGRHLRLGQNRSAHTVRAYVGDARALLTHL--YTRSPDA- 51 Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 I +L +R++++ +L R S +++F +L L + K Sbjct: 52 -AIGELDLPLLRSWLADLAAAGAARTTLARRASAVRTFTAWLTGTGRLPADPGLRLAAPK 110 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 +LP L +QA+ +D E + R+ I+ +LY G+R+SE L + Sbjct: 111 AHRTLPAVLARQQAVAAMDAAESGARQEDP-MALRDRLIVEMLYATGIRVSELCGLDIDD 169 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLN 239 + ++ +R+ GKG+K R VP A+ ++ P + L G RG+ L+ Sbjct: 170 VDRERRLVRVLGKGNKERSVPFGGPADLAVEQWLRRGRPAFATVESGRALLIGRRGRRLD 229 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 + + ++ + H LRHS ATHLL G DLR +Q +LGH L+TTQ+YT Sbjct: 230 QRQARTVVHEVVSAIPGAPDLGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYT 289 Query: 300 NVNSKNGGDWMMEIYDQTHP 319 +V+ + + +++DQ HP Sbjct: 290 HVSIER----LKKVHDQAHP 305 >gi|150008883|ref|YP_001303626.1| tyrosine type site-specific recombinase [Parabacteroides distasonis ATCC 8503] gi|301311928|ref|ZP_07217850.1| integrase/recombinase XerC [Bacteroides sp. 20_3] gi|149937307|gb|ABR44004.1| tyrosine type site-specific recombinase [Parabacteroides distasonis ATCC 8503] gi|300830030|gb|EFK60678.1| integrase/recombinase XerC [Bacteroides sp. 20_3] Length = 302 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/282 (24%), Positives = 139/282 (49%), Gaps = 8/282 (2%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++L L ER S T+ +Y D QF ++ E + + ++ +R++I Sbjct: 4 DDFLNYLRYERNYSNYTIGAYSKDLDQFQRYV---REHREGVFNPGEIDSDFVRSWIVSL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 +K+ S+ R LS +KSF K+L KR I + + + + K LP + + + L+ Sbjct: 61 MDEKLSPVSVNRKLSSLKSFFKFLMKRGIVSANPLRLVSGPKTKKPLPYFIKDSELEALL 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + + RN ++ +LY G+R SE + + ++ + +++ GK +K R Sbjct: 121 DG----DGFDEDFEGVRNRLVIEMLYDTGMRRSELIGIRNVDVDYEAMQVKVTGKRNKQR 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 ++P ++ +L Y ++ ++ + R G L+ G+ +++ + + Sbjct: 177 LIPFAEGLKNLMLAYTEVRDREVEAAGEWFFVRK-NGNQLSTGIVYNIVKKQLSEIPMLA 235 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + H LRHSFAT +L+NG +L +++ +LGH L++T +YT+ Sbjct: 236 KRSPHVLRHSFATSMLNNGAELNAVKDLLGHSSLASTSVYTH 277 >gi|2251178|emb|CAB10656.1| XerC protein [Mycobacterium leprae] Length = 302 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 83/305 (27%), Positives = 138/305 (45%), Gaps = 26/305 (8%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 ++L + G S+ T ++Y D R L L + QLS +R++++ Sbjct: 14 EHLALRCGRSEHTRRAYLGDLRSLLTHLEGRGSR------LDQLSLPVLRSWLATAAGAG 67 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 +L R +S +K+F + K R ++ + +LP L + QAL ++ Sbjct: 68 AARTTLARRISAVKAFTAWAKWRGQLAADPAARLQVPRAYRTLPAVLRQDQALQIM-AAA 126 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202 + + + R+ I+ +LY G+R+SE L ++ +R+ GKG+K R P Sbjct: 127 KSGAEQGDPLALRDRLIVEMLYATGIRVSELCGLDIDDVDTRHRLVRVLGKGNKQRTAPF 186 Query: 203 LPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 A+ + D P + + L G RG+ L+ +RQ R + ++ Sbjct: 187 GVPAADALRGWLDDGRPALVTVESGPALLLGSRGRRLD-------VRQARTVVHQTVAVV 239 Query: 262 A-------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 A H LRHS ATHLL G DLR +Q +LGH L+TTQ+YT+V + ++ Sbjct: 240 AGAPDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSR----LRVVH 295 Query: 315 DQTHP 319 DQ HP Sbjct: 296 DQAHP 300 >gi|124514259|gb|EAY55773.1| putative phage integrase family protein [Leptospirillum rubarum] Length = 314 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 92/307 (29%), Positives = 147/307 (47%), Gaps = 21/307 (6%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 ++L + G S T Q+Y D F F E +++ S ++ + + R + Sbjct: 14 EDLRVASGRSPHTTQAYLLD---LFAFARFLGEHGLSLL---DFSPEDVTHYFAHR--ED 65 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 + RS R LS I+S+ ++LK+R + + + L + L ++ LP L+E++ L L++ Sbjct: 66 LAMRSRSRVLSAIRSWSRFLKRRGLPAIDPDTLPVPRLPRN--LPGVLDEEEILRLLEAP 123 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 T R+ AIL Y GLR+SE LT + ++ +R+ GKG K R+ Sbjct: 124 DPKTDE-----GIRDRAILATFYASGLRVSELAELTLDRLNLNEEQIRVTGKGQKERVA- 177 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 L + A L+ Y + LF R I+ R G+ S + Sbjct: 178 FLDGLSCARLKLYLERVRPSTNTAEKTLFLTRRQTGFTRQGLWLLIKGYARQCGIDRSVS 237 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321 HTLRHSFATHLLS+G D+RSIQ +LGH + TT+IYT+V+ + + E + HP Sbjct: 238 PHTLRHSFATHLLSHGMDIRSIQILLGHSDIQTTEIYTHVDIR----MLAEDLAKYHPRG 293 Query: 322 TQKDKKN 328 + +K Sbjct: 294 KRPEKDG 300 >gi|220929076|ref|YP_002505985.1| site-specific tyrosine recombinase XerC [Clostridium cellulolyticum H10] gi|219999404|gb|ACL76005.1| integrase family protein [Clostridium cellulolyticum H10] Length = 330 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 100/322 (31%), Positives = 163/322 (50%), Gaps = 36/322 (11%) Query: 6 LPEIVSFEL---LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY--------- 53 + I FE+ LK+ N+LQ + +G SK T+Q Y D R FL FL + Sbjct: 1 MKNIFDFEMPLVLKDFLNYLQTI---KGKSKNTIQVYFYDLRIFLRFLKIHRNLVDKNIE 57 Query: 54 ------TEEKITIQTIRQLS--YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK-K 104 T+ I++ LS YT + +F+S +R R+ R ++ +KSF YL K Sbjct: 58 FNSIDITDVDISLLKTVTLSDLYTYM-SFVSNKRDNTSHARA--RKVASLKSFFNYLSTK 114 Query: 105 RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLY 164 K+ + + + + K LPR LN ++ L+ +V HE R+ AI+ + Sbjct: 115 AKLLDINPTIELESPKILKRLPRYLNFDESKKLLTSVN-KADHEYAI---RDYAIITIFL 170 Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224 CG+R+SE + + NI D+ TL + GKG K R +PL + +AI +Y + P + L Sbjct: 171 NCGIRLSELVGINLHNIKDN--TLIVFGKGGKERSIPLNRACLQAIDDYLKVRPVN-GLK 227 Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGG-DLRS 282 + LF R + ++ Q+ +++ GL P + H LRH+ AT + G D+R+ Sbjct: 228 DKSALFISRRNQRISKESVQKIVKRYITEAGLDPQRYSTHKLRHTAATLMYKYGNVDIRA 287 Query: 283 IQSILGHFRLSTTQIYTNVNSK 304 +Q ILGH +STT+IYT+++ + Sbjct: 288 LQEILGHESISTTEIYTHLDQQ 309 >gi|15827839|ref|NP_302102.1| site-specific tyrosine recombinase XerC [Mycobacterium leprae TN] gi|221230316|ref|YP_002503732.1| site-specific tyrosine recombinase XerC [Mycobacterium leprae Br4923] gi|18202762|sp|Q9CBU0|XERC_MYCLE RecName: Full=Tyrosine recombinase xerC gi|13093391|emb|CAC30551.1| integrase/recombinase [Mycobacterium leprae] gi|219933423|emb|CAR71695.1| integrase/recombinase [Mycobacterium leprae Br4923] Length = 297 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 83/305 (27%), Positives = 138/305 (45%), Gaps = 26/305 (8%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 ++L + G S+ T ++Y D R L L + QLS +R++++ Sbjct: 9 EHLALRCGRSEHTRRAYLGDLRSLLTHLEGRGSR------LDQLSLPVLRSWLATAAGAG 62 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 +L R +S +K+F + K R ++ + +LP L + QAL ++ Sbjct: 63 AARTTLARRISAVKAFTAWAKWRGQLAADPAARLQVPRAYRTLPAVLRQDQALQIM-AAA 121 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202 + + + R+ I+ +LY G+R+SE L ++ +R+ GKG+K R P Sbjct: 122 KSGAEQGDPLALRDRLIVEMLYATGIRVSELCGLDIDDVDTRHRLVRVLGKGNKQRTAPF 181 Query: 203 LPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 A+ + D P + + L G RG+ L+ +RQ R + ++ Sbjct: 182 GVPAADALRGWLDDGRPALVTVESGPALLLGSRGRRLD-------VRQARTVVHQTVAVV 234 Query: 262 A-------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 A H LRHS ATHLL G DLR +Q +LGH L+TTQ+YT+V + ++ Sbjct: 235 AGAPDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSR----LRVVH 290 Query: 315 DQTHP 319 DQ HP Sbjct: 291 DQAHP 295 >gi|255014711|ref|ZP_05286837.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7] Length = 302 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/282 (24%), Positives = 139/282 (49%), Gaps = 8/282 (2%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++L L ER S T+ +Y D QF ++ E + + ++ +R++I Sbjct: 4 DDFLNYLRYERNYSNYTIGAYSKDLDQFQRYV---REHREGVFNPGEIDSDFVRSWIVSL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 +K+ S+ R LS +KSF K+L KR I + + + + K LP + + + L+ Sbjct: 61 MDEKLSPVSVNRKLSSLKSFFKFLMKRGIVSANPLRLVSGPKTKKPLPYFIKDSELEALL 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + + RN ++ +LY G+R SE + + ++ + +++ GK +K R Sbjct: 121 DG----DGFDEDFEGVRNRLVIEMLYDTGMRRSELIGIRNVDVDYEAMQVKVTGKRNKQR 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 ++P ++ +L Y ++ ++ + R G L+ G+ +++ + + Sbjct: 177 LIPFAEGLKNLMLAYTEVRDREVEAAGEWFFVRK-NGNQLSTGIVYNIVKKQLSEIPMLA 235 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + H LRHSFAT +L+NG +L +++ +LGH L++T +YT+ Sbjct: 236 KRSPHVLRHSFATSMLNNGAELNTVKDLLGHSSLASTSVYTH 277 >gi|86751622|ref|YP_488118.1| Phage integrase [Rhodopseudomonas palustris HaA2] gi|86574650|gb|ABD09207.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris HaA2] Length = 310 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 79/292 (27%), Positives = 138/292 (47%), Gaps = 14/292 (4%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L + +ER LS TLQ+Y D F ++ + + +RA++ Sbjct: 9 SFLDHCSVERQLSDHTLQAYGYDLADFAAWVGTRRRKDKAFSAGAPIETDHLRAYLEHMT 68 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALTL 137 +K+ +++R L+ ++SF +YL+ R T N + LK K LPR L+ + L Sbjct: 69 ERKLSAATVRRRLACLRSFFRYLEDRG--TMPNPFDGWRLKLPKRKRLPRTLSRDETTQL 126 Query: 138 VDNVLL-----HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + + H + E+ + + L+ G+RI E + ++ D + +RI G Sbjct: 127 LKSARAPGAARHAAPESPSL----CTEIRLMIATGIRIGELCKIASTDVSSDGAAIRIHG 182 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 KG + R+V + + +A L + L PLF G L P F+ +R Sbjct: 183 KGSRDRMVYVTDNGLRAELRKLAVL-RQRTLGGDGPLFLNRNGDKLRPHSFRAKLRNFAG 241 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 G+ T H LRH+ AT L+ +G D+R +Q +LGH ++TT+IYT+V+ + Sbjct: 242 QAGVRRRVTPHMLRHTAATLLIESGVDIRIVQRLLGHSSIATTEIYTHVSDE 293 >gi|262383756|ref|ZP_06076892.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B] gi|298375888|ref|ZP_06985844.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_19] gi|262294654|gb|EEY82586.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B] gi|298266925|gb|EFI08582.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_19] Length = 302 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/282 (24%), Positives = 139/282 (49%), Gaps = 8/282 (2%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++L L ER S T+ +Y D QF ++ E + + ++ +R++I Sbjct: 4 DDFLNYLRYERNYSNYTIGAYSKDLDQFQRYV---REHREGVFDPGEIDSDFVRSWIVSL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 +K+ S+ R LS +KSF K+L KR I + + + + K LP + + + L+ Sbjct: 61 MDEKLSPVSVNRKLSSLKSFFKFLMKRGIVSANPLRLVSGPKTKKPLPYFIKDSELEALL 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + + RN ++ +LY G+R SE + + ++ + +++ GK +K R Sbjct: 121 DG----DGFDEDFEGVRNRLVIEMLYDTGMRRSELIGIRNVDVDYEAMQVKVTGKRNKQR 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 ++P ++ +L Y ++ ++ + R G L+ G+ +++ + + Sbjct: 177 LIPFAEGLKNLMLAYTEVRDREVEAAGEWFFVRK-NGNQLSTGIVYNIVKKQLSEIPMLA 235 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + H LRHSFAT +L+NG +L +++ +LGH L++T +YT+ Sbjct: 236 KRSPHVLRHSFATSMLNNGAELNAVKDLLGHSSLASTSVYTH 277 >gi|224824765|ref|ZP_03697872.1| tyrosine recombinase XerD [Lutiella nitroferrum 2002] gi|224603258|gb|EEG09434.1| tyrosine recombinase XerD [Lutiella nitroferrum 2002] Length = 296 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 89/303 (29%), Positives = 146/303 (48%), Gaps = 23/303 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L + GLS+ TL +Y D L+ L +E+ + + RA + Sbjct: 11 FLDQLWLSDGLSRNTLSAYRRD----LLKLGARLDEEGGVHLVEAGVADLQRALLLGVEQ 66 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 +K R+ R +S ++ F +YL + + K LP++L+EK + L++ Sbjct: 67 EKATTRA--RLVSAMRRFYQYLHASGQRPDDPSAALERPKHGQPLPKSLSEKHVVALLEA 124 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + T + R+ A+L +LY GLR+SE + LT Q + + GKG K R+V Sbjct: 125 PDVATP-----LGLRDRAMLEVLYATGLRVSELVGLTLQQVDLTSGVVMTLGKGGKERLV 179 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL----RRYLGL 256 P+ + + Y L L +P + + L G+ ++ L R GL Sbjct: 180 PMGEVAQDWLGRY--LATGRPALLTGVPCEQVFVTR-LKAGMTRQMAWHLISGYARRQGL 236 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 P + HTLRH+FATHL+++G DLR +Q +LGH +STTQIYT+V + + +++Q Sbjct: 237 P-PVSPHTLRHAFATHLVNHGADLRVVQLLLGHSDISTTQIYTHVARER----LRRLHEQ 291 Query: 317 THP 319 HP Sbjct: 292 HHP 294 >gi|293380240|ref|ZP_06626321.1| putative tyrosine recombinase XerC [Lactobacillus crispatus 214-1] gi|290923207|gb|EFE00129.1| putative tyrosine recombinase XerC [Lactobacillus crispatus 214-1] Length = 302 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 78/286 (27%), Positives = 135/286 (47%), Gaps = 10/286 (3%) Query: 17 ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 E +L L+ ER S T+ +Y+ D + F E ++ +I+ ++ Sbjct: 7 ELDQFLSYLQNERHYSAKTVLAYQTDLHEAERFW----HENGGFPGWTKVRERDIQVYLQ 62 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 +K+ S R +S + SF ++L +RK+ + + LP+ + + Sbjct: 63 HLAERKLARSSQLRKMSSLHSFYRFLTRRKLVAIDPTQGITLRRGEKKLPQFFYQPELKQ 122 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 + D++ K + RN A+ L Y G+R+SE +LT + D T+ + GKG+K Sbjct: 123 VFDSL-----KGNKPLTMRNLAMFELFYATGMRVSEVSNLTLNQLDLDLQTILVHGKGNK 177 Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 R V +K+++ Y + P L + + +F +G + + +++ G Sbjct: 178 DRYVAFDDKTKKSLIAYLENARPLLLKNDDEQHVFLNNQGTGITSRGIETVMQKTFNQAG 237 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + H LRHSFAT +L+NG DLRS+Q +LGH LS TQIYT+V Sbjct: 238 ISGKVHPHELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHV 283 >gi|240170150|ref|ZP_04748809.1| site-specific tyrosine recombinase XerD [Mycobacterium kansasii ATCC 12478] Length = 313 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 90/326 (27%), Positives = 144/326 (44%), Gaps = 25/326 (7%) Query: 9 IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68 + + L + Q +L +L IERG++ TL SY D R++ L E I + + Sbjct: 1 MTTLTLDTQLQGYLDHLAIERGVAANTLSSYRRDLRRYTKHL-----EDRGITDLAAVGE 55 Query: 69 TEIRAFISKRRTQKIGD----------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118 ++ F+ R GD S R+L ++ ++ + +R Sbjct: 56 DDVSDFLVALRR---GDPDSGATALAAVSAARALIAVRGLHRFAAAEGLAELDVARAVRP 112 Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178 LP++L Q L L++ + + RN A+L LLY G RISEA+ L Sbjct: 113 PTPGRRLPKSLTVDQVLALLEGAGGDNPADGP-LTLRNRALLELLYSTGSRISEAVGLDV 171 Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGK 236 ++ ++ ++GKG K R+VP+ A+ Y DL + +F RG Sbjct: 172 DDVDTHARSVLLRGKGGKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNARGG 231 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 L+ + ++ G+ + H LRHSFATHLL G D+R +Q +LGH ++TTQ Sbjct: 232 RLSRQSAWQVLQDAAECAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQ 291 Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSIT 322 IYT V + E++ HP T Sbjct: 292 IYTLVTVHA----LREVWAGAHPRAT 313 >gi|77463394|ref|YP_352898.1| integrase/recombinase XerD [Rhodobacter sphaeroides 2.4.1] gi|77387812|gb|ABA78997.1| Probable integrase/recombinase XerD [Rhodobacter sphaeroides 2.4.1] Length = 311 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 79/281 (28%), Positives = 133/281 (47%), Gaps = 34/281 (12%) Query: 38 SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97 +Y D + + +L +E+ +T + + A+++ Q + + R LS I+ Sbjct: 30 AYGRDLKDYATWLGRRSEDFLTA------TRDTVEAYLTFCEAQGLSSATRARRLSSIRQ 83 Query: 98 FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA--R 155 ++ + ++ + + +S LP+ L ++ VD +L + + + R Sbjct: 84 LYRFGHEEGWRADNPAIRISGPGRSKRLPKTLEIEE----VDRLLEAARDKGRRAEDQIR 139 Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215 N +L LLY G+R+SE + L + + ++GKG K R+VPL P R+A+ ++ Sbjct: 140 NRCLLELLYATGMRVSEMVGLPVAAARGNPRMILVRGKGGKERMVPLSPPAREALADW-- 197 Query: 216 LCPFDLNLNIQLPLFRGIRGKP----LNPG----------VFQRYIRQLRRYLGL-PLST 260 L G+P L PG F ++Q+ G+ P Sbjct: 198 -----LRARDAAEAQGQKAGRPASRFLFPGSGAAGHLTREYFYVLVKQIAVLAGVDPAKV 252 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T HTLRH+FATHLL+ G DLR IQ++LGH LSTT+IYT+V Sbjct: 253 TPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHV 293 >gi|227495411|ref|ZP_03925727.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436] gi|226830958|gb|EEH63341.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436] Length = 317 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 84/312 (26%), Positives = 139/312 (44%), Gaps = 26/312 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +L L +E+G S T+ Y D +FL+ E I + Q+ I A +++ Sbjct: 16 GFLDYLTVEKGASAHTVAGYRRDLERFLV------ERGIADTPLAQVDTVAIDAHLTQLS 69 Query: 80 TQKIGDRSLKRSLSGIKS-----FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 G L + +Y I + ++ K LP+A++ ++ Sbjct: 70 LGFAGKPGLSAASIARARASIRALFRYAVSEDILSADPAAEVQQKKLGKHLPKAISLEEI 129 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQG 192 +++ + R+ A++ LLYG G RI+E ++L+P ++ + +++ G Sbjct: 130 AAMLEV----AGQRPGPVGLRDVALIELLYGTGARITEVMNLSPDDLYLAGEFPHVKLFG 185 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPLNPGVFQRYI 247 KG K R+VPL +A+ +Y L L + PLF RG L+ I Sbjct: 186 KGRKERLVPLGSFAVQALEDYLLLGRPLLLGKAKTRVAGHPLFLNKRGLSLSRQSAWEII 245 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 Q G + H+LRHSFATHLL G +R +Q +LGH ++TTQIYT V+ Sbjct: 246 SQTAVAAGCVSEVSPHSLRHSFATHLLEGGASIRDVQELLGHASVTTTQIYTKVSMNT-- 303 Query: 308 DWMMEIYDQTHP 319 + E++ THP Sbjct: 304 --LREVHALTHP 313 >gi|254518936|ref|ZP_05130992.1| site-specific tyrosine recombinase XerC [Clostridium sp. 7_2_43FAA] gi|226912685|gb|EEH97886.1| site-specific tyrosine recombinase XerC [Clostridium sp. 7_2_43FAA] Length = 457 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 103/324 (31%), Positives = 158/324 (48%), Gaps = 44/324 (13%) Query: 5 NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY----TEEKITI 60 NLPE V ++L LE +G S T++ YE D F FL Y T++ + Sbjct: 140 NLPESVV--------DFLNYLETIKGKSPNTIKGYEIDLTLFFRFLKIYKGLITDDSLEF 191 Query: 61 QTI----------RQLSYTEIRAFISKRRTQKI-GDRSLKRSLSGIKSFLKYLK-KRKIT 108 I R++ T++ AF+S Q+ G + R ++ +KS+ K+L K KI Sbjct: 192 SEIDIRDIDNSFVRKIKLTDLYAFLSFAEKQRENGSYARARKVAALKSYFKFLNGKAKII 251 Query: 109 TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168 ++ L + + K + P L+ +++ L+ + L ++ + R+ IL L CG+ Sbjct: 252 DDNPTLELESPKINKRHPVYLSLDESVNLLSS--LDKDNKNYY---RDYCILTLFLNCGM 306 Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-----C-PFDLN 222 R+SE S+ I D TL I GKGDK R V L + KAI Y + C P D Sbjct: 307 RLSELCSIKLDKIKGD--TLTIIGKGDKERTVYLNEACLKAIDNYLAVRDTSKCTPED-- 362 Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG-DL 280 + L R KP+N + +++ GL T H LRH+ AT + +G D+ Sbjct: 363 ---KEYLLLSSRYKPINKRTVELLVKKHIFNSGLSNEKYTPHKLRHTAATLMYKHGNVDI 419 Query: 281 RSIQSILGHFRLSTTQIYTNVNSK 304 RS+QSILGH +STTQIYT+V+ + Sbjct: 420 RSLQSILGHENISTTQIYTHVDEE 443 >gi|326203021|ref|ZP_08192887.1| integrase family protein [Clostridium papyrosolvens DSM 2782] gi|325986667|gb|EGD47497.1| integrase family protein [Clostridium papyrosolvens DSM 2782] Length = 329 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 93/318 (29%), Positives = 162/318 (50%), Gaps = 28/318 (8%) Query: 6 LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL-----------AFYT 54 + I FE+ +++L ++ +G S T+Q Y D R F FL F T Sbjct: 1 MKNIYDFEMPAVLRDFLNYMQTIKGKSINTIQVYFYDLRIFFRFLKIHRNIVDKNLEFDT 60 Query: 55 EE--KITIQTIRQLSYTEI---RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK-KRKIT 108 E I I ++ ++ +++ +F+S +R R+ R ++ +KSF YL K K+ Sbjct: 61 IEITDIDIPLLKTVTLSDLYTYMSFVSNKRDNTSHARA--RKVASLKSFFNYLSTKAKLL 118 Query: 109 TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168 + + + + K LPR LN ++ L+ +V +HE R+ AI+ + CG+ Sbjct: 119 DINPTIELESPKILKRLPRYLNFDESKKLLTSVT-EANHE---YSVRDYAIITIFLNCGI 174 Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228 R+SE + + NI D+ TL + GKG K R +PL + +AI +Y + P + L + Sbjct: 175 RLSELVGINLYNIKDN--TLTVFGKGGKERSIPLNKACLQAIEDYMKIRPVN-GLKDKSA 231 Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGG-DLRSIQSI 286 LF R + ++ Q+ +++ + GL P + H LRH+ AT + G D+R++Q I Sbjct: 232 LFISRRNQRISKESVQKIVKRYIKEAGLDPQRYSTHKLRHTAATLMYKYGNVDIRALQEI 291 Query: 287 LGHFRLSTTQIYTNVNSK 304 LGH +STT+IYT+++ + Sbjct: 292 LGHESISTTEIYTHLDQQ 309 >gi|227879131|ref|ZP_03997015.1| integrase-recombinase [Lactobacillus crispatus JV-V01] gi|227861288|gb|EEJ68923.1| integrase-recombinase [Lactobacillus crispatus JV-V01] Length = 302 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 78/286 (27%), Positives = 135/286 (47%), Gaps = 10/286 (3%) Query: 17 ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 E +L L+ ER S T+ +Y+ D + F E ++ +I+ ++ Sbjct: 7 ELDQFLSYLQNERHYSAKTVLAYQTDLHEAERFW----HENGGFPGWTKVRERDIQVYLQ 62 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 +K+ S R +S + SF ++L +RK+ + + LP+ + + Sbjct: 63 HLAERKLARSSQLRKMSSLHSFYRFLTRRKLVAIDPTKGITLRRGEKKLPQFFYQPELKQ 122 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 + D++ K + RN A+ L Y G+R+SE +LT + D T+ + GKG+K Sbjct: 123 VFDSL-----KGNKPLTMRNLAMFELFYATGMRVSEVSNLTLNQLDLDLQTILVHGKGNK 177 Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 R V +K+++ Y + P L + + +F +G + + +++ G Sbjct: 178 DRYVAFDDKTKKSLIAYLENARPLLLKNDDEQHVFLNNQGTGITSRGIETVMQKTFNQAG 237 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + H LRHSFAT +L+NG DLRS+Q +LGH LS TQIYT+V Sbjct: 238 ISGKVHPHELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHV 283 >gi|240851370|ref|YP_002972773.1| integrase /recombinase xerD [Bartonella grahamii as4aup] gi|240268493|gb|ACS52081.1| integrase /recombinase xerD [Bartonella grahamii as4aup] Length = 312 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 84/298 (28%), Positives = 148/298 (49%), Gaps = 32/298 (10%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY--TEIRAFISK 77 ++L+ + ERG S TL +Y+ D + + +++++ ++ S ++ A +S Sbjct: 9 HFLEMMSAERGASPHTLAAYQHDLQ--------WAQDELSSHSVSLFSAQKEDLIALLSL 60 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 T S R LS ++ F ++L + + ++ ++ LP+ ++E + L Sbjct: 61 MHTFGFAASSQARRLSTLRQFYQFLYAEGLRADDPSHDIDAPRQGRPLPKIMSEDAVIKL 120 Query: 138 VDNVLLHTSH----ETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 +D L + ++ A R + +LY GLRISE +SL Q + ++ ++G Sbjct: 121 LDLAQLEVNQADYGSKDYLRALRLQLLSEMLYATGLRISELVSLPVQAVRGKAYSILVRG 180 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNP-------GVFQ 244 KG K R+V L + +L++ +L D ++ P LF P N V Sbjct: 181 KGKKERMVLLSKKAYQVLLQWLNLR--DQGKDVASPYLF------PANSETGYIARQVVA 232 Query: 245 RYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 R ++ L R G+ S + H LRH+FA+HLL NG DLR++Q +LGH ++TTQIYT+V Sbjct: 233 RELKNLARRAGIESDSFSPHVLRHAFASHLLQNGADLRAVQHLLGHSDIATTQIYTHV 290 >gi|944942|gb|AAA74432.1| RipX [Bacillus subtilis] Length = 163 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 66/175 (37%), Positives = 90/175 (51%), Gaps = 24/175 (13%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ A+L LLY G+R+SE + L ++ +R GKG K RIVP+ + AI EY Sbjct: 1 RDKAMLELLYATGIRVSEMIELKTADVHLSMGFIRCFGKGRKERIVPIGEAAASAIEEYM 60 Query: 215 DLCPFDL-NLNIQLPLFRGIRG---------KPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 L N+ LF G +P + R+ ++L T HT Sbjct: 61 TKARGKLLKNNVSDALFLNHHGNRSAARILEEPEKNRIGSRHKKEL----------TPHT 110 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LRHSFATHLL NG DLR++Q +LGH +STTQIYT+V + ++Y Q HP Sbjct: 111 LRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTR----LKDVYKQFHP 161 >gi|229497057|ref|ZP_04390761.1| site-specific recombinase, phage integrase family/ribosomal subunit interface protein [Porphyromonas endodontalis ATCC 35406] gi|229315982|gb|EEN81911.1| site-specific recombinase, phage integrase family/ribosomal subunit interface protein [Porphyromonas endodontalis ATCC 35406] Length = 398 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 90/309 (29%), Positives = 154/309 (49%), Gaps = 19/309 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISK 77 + +L L ER S+ T+ +YE D +Q++ ++ EE + R L IR F+S Sbjct: 7 ERFLGYLRYERNQSEHTVAAYELDLQQYVRYVEEVLGEEFVPSDGDRDL----IRGFLSS 62 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 Q S+ R LS +KS+ +YL K + +S +R + + LP L+E++ Sbjct: 63 LIEQGRKRSSVHRKLSSLKSYYRYLVKIGLLEQSPARLVRGPRGESPLPAVLSEQE---- 118 Query: 138 VDNVL-LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 + N+L + ++ RN IL + Y G+R SE + L + LR+ GKG K Sbjct: 119 ISNLLYAQEVDKDDFVALRNQLILEMFYETGMRRSELVGLLEGGVDLSSRVLRVFGKGRK 178 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ-LRRYLG 255 RI+P + I EY L + L+ Q+ F + +PL+ V + + + L+ G Sbjct: 179 ERIIPFGDRLAARISEYLALKHQKVGLS-QI-FFVSLGNQPLSGEVVYQIVHERLQSIPG 236 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 L H LRH+FAT +L+NG L +++ +LGH ++TT +YT+ + + ++Y+ Sbjct: 237 LA-RRGPHVLRHTFATAMLNNGAQLMAVKELLGHKSVATTVLYTHTSLAE----LQQMYN 291 Query: 316 QTHPSITQK 324 HP ++K Sbjct: 292 -AHPRASKK 299 >gi|221639249|ref|YP_002525511.1| Phage integrase family protein [Rhodobacter sphaeroides KD131] gi|221160030|gb|ACM01010.1| Phage integrase family protein [Rhodobacter sphaeroides KD131] Length = 311 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 78/279 (27%), Positives = 129/279 (46%), Gaps = 30/279 (10%) Query: 38 SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97 Y D + + +L +E+ +T + + A+++ Q + + R LS I+ Sbjct: 30 GYGRDLKDYAAWLGRRSEDFLTA------TRDTVEAYLTFCEAQGLSSATRARRLSSIRQ 83 Query: 98 FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157 ++ + ++ + + +S LP+ L ++ L++ I RN Sbjct: 84 LYRFAHEEGWRADNPAIRISGPGRSKRLPKTLEIEEVDRLLEAARDKGRRAQDQI--RNR 141 Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 +L LLY G+R+SE + L + + ++GKG K R+VPL P R+A+ ++ Sbjct: 142 CLLELLYATGMRVSEMVGLPVAAARGNPRMILVRGKGGKERMVPLSPPAREALADW---- 197 Query: 218 PFDLNLNIQLPLFRGIRGKP----LNPG----------VFQRYIRQLRRYLGL-PLSTTA 262 L G+P L PG F ++Q+ G+ P T Sbjct: 198 ---LRARDAAEAQGQKAGRPASRFLFPGSGAAGHLTREYFYVLVKQIAVLAGVDPAKVTP 254 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 HTLRH+FATHLL+ G DLR IQ++LGH LSTT+IYT+V Sbjct: 255 HTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHV 293 >gi|42526718|ref|NP_971816.1| phage integrase family site specific recombinase [Treponema denticola ATCC 35405] gi|81412439|sp|Q73NE4|XERC_TREDE RecName: Full=Tyrosine recombinase xerC gi|41817033|gb|AAS11727.1| site-specific recombinase, phage integrase family [Treponema denticola ATCC 35405] Length = 305 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 92/306 (30%), Positives = 149/306 (48%), Gaps = 33/306 (10%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 R +K T+ SY+ D +IF + E + I +L ++IR FI++ +KI S+ Sbjct: 16 RQFTKATIDSYKND---LIIFEEWLKELDLNI---FELKASDIRIFIAELADKKIAPASI 69 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 R +S ++ F KY + +T + I ++RNLK + LP + KQA L ++ Sbjct: 70 NRMMSTLRGFYKYALRFNLTKMNPISSVRNLKLAQKLPVFMFPKQAQEFCR---LPSNAG 126 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 W + R++A+ LY G R+SE L +++ S + GKG K R V ++ Sbjct: 127 ILW-ETRDAALFASLYSTGCRVSELAGLDIKDLDKTLSYAIVFGKGKKERKVFFAEFAKE 185 Query: 209 AILEYY----DLCPF-------DLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLGL 256 + EY DL D I+ LF + +PL G+ RYI + RY+ L Sbjct: 186 YLREYLKERSDLVEKFKGQVQKDGKGKIRDTLFINQKAQPLTSRGI--RYI--IDRYVEL 241 Query: 257 PLST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 + H RHSFA+ L++ G D+R +Q +LGH +STTQ YT++ ++ + + Sbjct: 242 SPELKHLSPHAFRHSFASTLITRGADIRVVQELLGHESVSTTQRYTHITAEQ----LQNL 297 Query: 314 YDQTHP 319 Y HP Sbjct: 298 YKTAHP 303 >gi|297181069|gb|ADI17268.1| site-specific recombinase xerd [uncultured alpha proteobacterium HF0070_17D04] Length = 361 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 81/305 (26%), Positives = 141/305 (46%), Gaps = 23/305 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE---IRAFIS 76 +LQ + +RGL+ ++ +YE D L L+ Q R + +R ++ Sbjct: 67 EFLQAMAADRGLAANSIAAYERDLASCLESLS---------QAGRHFDSCDADDLRCLLA 117 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + + RS+ R LS ++ + +L + ++ + + N K+ +LP++L+E++ Sbjct: 118 EWTLSGLAARSVARRLSALRQMMAWLVEERVRPDDPCRWIDNPKQPAALPKSLSEEEITA 177 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L+ R +A+L LLY GLR+SE +SL + + + GKG K Sbjct: 178 LITAARALAPAAEA---LRMTAMLELLYATGLRVSELVSLPVDQFRRELEAVIVTGKGGK 234 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 R+V + R A + + D + P R ++ F ++++ G Sbjct: 235 ERLVAMGTPARDATAAW--MAARDATEAFVTSPYLFPFRESHVSRQQFAAALKRVGAAAG 292 Query: 256 L-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 + P + H +RHSFATH+L+ G DLR +Q +LGH +STTQIYT K D + + Sbjct: 293 IDPRRVSPHVVRHSFATHMLNRGADLRGLQMLLGHADISTTQIYT----KTRPDRLAGLV 348 Query: 315 DQTHP 319 HP Sbjct: 349 AAAHP 353 >gi|296139371|ref|YP_003646614.1| integrase family protein [Tsukamurella paurometabola DSM 20162] gi|296027505|gb|ADG78275.1| integrase family protein [Tsukamurella paurometabola DSM 20162] Length = 298 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 79/296 (26%), Positives = 131/296 (44%), Gaps = 12/296 (4%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +ERG S+ T+++Y D F E + + +L +RA++ +R Sbjct: 12 LRLERGRSEHTVRAYLAD---LTALFEFAAERGVAVD---RLDLATLRAWLGERAASGAA 65 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 +L R S +++ + +R ++ + +LP + Sbjct: 66 RTTLARQASSARNYTAWAARRGHLDGDPGARLKAPRPRRTLP-GVLSADDAAAALTNAAS 124 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + E I R+ AI LLY G+R+SE L ++ D+ +R+ GKG+K R VP Sbjct: 125 GAAEGDPIAVRDQAITELLYATGIRVSELCGLDVGSVDRDRRVVRVIGKGNKERTVPYGA 184 Query: 205 SVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 + + + D P + LF G RG L+P + + Q+ + H Sbjct: 185 PAAEVLGRWVDEARPQLVAEKSGAALFLGARGGRLDPRQARTVVHQVTGSVPGGREVAPH 244 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LRH+ ATHLL G DLR +Q +LGH L+TTQ+YT+V+ + ++Q HP Sbjct: 245 GLRHTAATHLLDGGADLRVVQELLGHSSLATTQLYTHVSVAR----LRAAHEQAHP 296 >gi|332558273|ref|ZP_08412595.1| integrase/recombinase XerD [Rhodobacter sphaeroides WS8N] gi|332275985|gb|EGJ21300.1| integrase/recombinase XerD [Rhodobacter sphaeroides WS8N] Length = 311 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 78/279 (27%), Positives = 130/279 (46%), Gaps = 30/279 (10%) Query: 38 SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97 +Y D + + +L +E+ +T + + A+++ Q + + R LS I+ Sbjct: 30 AYGRDLKDYATWLVRRSEDFLTA------TRDTVEAYLTFCEAQGLSSATRARRLSSIRQ 83 Query: 98 FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157 ++ + ++ + + +S LP+ L ++ L++ I RN Sbjct: 84 LYRFAHEEGWRADNPAIRISGPGRSKRLPKTLEIEEVDRLLEAARDKGRRAQDQI--RNR 141 Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 +L LLY G+R+SE + L + + ++GKG K R+VPL P R+A+ ++ Sbjct: 142 CLLELLYATGMRVSEMVGLPVAAARGNPRMILVRGKGGKERMVPLSPPAREALADW---- 197 Query: 218 PFDLNLNIQLPLFRGIRGKP----LNPG----------VFQRYIRQLRRYLGL-PLSTTA 262 L G+P L PG F ++Q+ G+ P T Sbjct: 198 ---LRARDAAEAQGQKAGRPASRFLFPGSGAAGHLTREYFYVLVKQIAVLAGVDPAKVTP 254 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 HTLRH+FATHLL+ G DLR IQ++LGH LSTT+IYT+V Sbjct: 255 HTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHV 293 >gi|261400435|ref|ZP_05986560.1| tyrosine recombinase XerD [Neisseria lactamica ATCC 23970] gi|313668771|ref|YP_004049055.1| integrase/recombinase [Neisseria lactamica ST-640] gi|269209883|gb|EEZ76338.1| tyrosine recombinase XerD [Neisseria lactamica ATCC 23970] gi|313006233|emb|CBN87695.1| putative integrase/recombinase [Neisseria lactamica 020-06] Length = 291 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 81/281 (28%), Positives = 138/281 (49%), Gaps = 16/281 (5%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L+ L ++R LS+ TL SY D + L+ + +T+ T++ A + Q Sbjct: 10 LETLWLDRRLSRNTLDSYRRDLEKIARRLS------LCGKTLADAEETDLAAAVYADGEQ 63 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 + S R+LS K +++ + ++ ++ K ++P + E+Q L+D Sbjct: 64 R---SSQARALSACKRLYAWMEWEGMRADNPTRLLKPPKTDRNIPPLITEQQVSRLLDAP 120 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 T H R+ A+L L+Y GLR+SEA+ L N+ D+ + GKGDK R+VP Sbjct: 121 DTETPH-----GLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVP 175 Query: 202 LLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 + + YY + P L LF + ++ + +++ G+ Sbjct: 176 MGQESAYWVGRYYTEARPVLLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGIG-HI 234 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + H+LRH+FATHL+ +G DLR +Q +LGH L+TTQIYT++ Sbjct: 235 SPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHI 275 >gi|229815416|ref|ZP_04445748.1| hypothetical protein COLINT_02464 [Collinsella intestinalis DSM 13280] gi|229808949|gb|EEP44719.1| hypothetical protein COLINT_02464 [Collinsella intestinalis DSM 13280] Length = 308 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 87/319 (27%), Positives = 141/319 (44%), Gaps = 21/319 (6%) Query: 7 PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66 P + ELL + +++ + GLS T+++Y Q L A + E Sbjct: 3 PSSLQSELLAQIDDFIVFISCVEGLSPETVRAYG----QHLEAYADWCESHAVDGL--DP 56 Query: 67 SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126 S ++R+++++ R ++ LS ++SF ++L+ + L K+ LP Sbjct: 57 SSRDLRSYLAEFRRDGRASTTVAAHLSALRSFFRWLEYSGHRAGAVPLATVAPKQRRELP 116 Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 L ++ L D L + R++A+L L G RISE L ++ + Sbjct: 117 HVLTAEELAALFDAPDLSCP-----VGLRDAAMLELFIATGARISELSRLELGDVCVAER 171 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNP 240 + + GKG K RIVPL + Y + L L + +F RG+ +N Sbjct: 172 QVCLLGKGSKERIVPLYARAIEVYERYLENGRPNLLRAPALGGDACRAVFVSDRGRAMNS 231 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + L+R G+ T H +RH+FAT LL G DLRS+Q +LGH LSTTQIYT+ Sbjct: 232 DALRYRFDVLKRKAGISSDITPHAMRHTFATELLGGGADLRSVQELLGHASLSTTQIYTH 291 Query: 301 VNSKNGGDWMMEIYDQTHP 319 + D + + HP Sbjct: 292 LTP----DRLKSAVARAHP 306 >gi|319407841|emb|CBI81494.1| integrase/recombinase XerD [Bartonella sp. 1-1C] Length = 312 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 85/313 (27%), Positives = 152/313 (48%), Gaps = 22/313 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY--TEIRAFISK 77 ++L+ + ERG S TL +Y+ D + + + K++ +I S ++ +S Sbjct: 9 HFLEMMSAERGASVCTLLAYQHDLQ--------WAQNKLSSHSISFFSAQREDLINLLSL 60 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 + S R LS ++ F ++L + + ++ + ++ LP+ ++E L Sbjct: 61 MQKAGCAATSQARRLSTLRQFFQFLYAEGLREDDPSSDIDSPRQGRPLPKIISEDAVTKL 120 Query: 138 VDNVLLHTSH-----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 +D L T + + R +L +LY GLRISE +SL Q + + + ++G Sbjct: 121 LDFAQLETEQAESGTQNYYRALRFQVLLEMLYATGLRISELVSLPVQAVRGKEQFILVRG 180 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 KG+K R+V L R+ +L++ + + +I L R G V R ++ L Sbjct: 181 KGEKERVVLLSEKARQILLQWLSVRDQRKDATSIYLFPARSSTGYIARQFV-ARGLKDLA 239 Query: 252 RYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 + G+ + H LRH+FA+HLL NG DLR++Q +LGH +STTQIYT+V + Sbjct: 240 KRAGIQSENFSPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQIYTHVLEAR----L 295 Query: 311 MEIYDQTHPSITQ 323 + ++ HP + Q Sbjct: 296 HRLVNEYHPLVDQ 308 >gi|58616838|ref|YP_196037.1| tyrosine recombinase xerD [Ehrlichia ruminantium str. Gardel] gi|58416450|emb|CAI27563.1| Tyrosine recombinase xerD [Ehrlichia ruminantium str. Gardel] Length = 312 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 92/297 (30%), Positives = 148/297 (49%), Gaps = 31/297 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L + E+ +S T QSY D L F+ + + + ++S +++ ++ Sbjct: 11 FLTAIAAEKHISYNTYQSYMSD---LLDLCKFFDCKNLPLI---EVSRDDLKDYVRLMHK 64 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 ++ ++ R +S IK+ K+ K I L++ + S +LP+ALN ++ L+D Sbjct: 65 REYKSSTISRKISAIKNLYKFFCKDNIIAYDPALSLDFPRLSRALPKALNIEEVSRLLDT 124 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-------DQSTLRIQGK 193 L +S + R +AI+ +LY G+R+SE + L +I + + S + I+GK Sbjct: 125 AALDSSPD----GLRTNAIINILYSSGIRVSELIYLKLNSIKEALNNDNIEISYITIRGK 180 Query: 194 GDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 ++ RIV L + S++K + Y P I LF G + NP QR I Q Sbjct: 181 ANRERIVLLNSSAIVSIQKYLEVYMHFVPN--GYEISQWLFPGTKFD--NPITRQR-IGQ 235 Query: 250 LRRYLGLPLST-----TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 L + L + + H LRHSFATHLL+NG D+ IQ +LGH LSTTQIYT V Sbjct: 236 LLKDLSISAGVDMTRISPHKLRHSFATHLLNNGSDIIFIQKMLGHTSLSTTQIYTYV 292 >gi|224537800|ref|ZP_03678339.1| hypothetical protein BACCELL_02683 [Bacteroides cellulosilyticus DSM 14838] gi|224520620|gb|EEF89725.1| hypothetical protein BACCELL_02683 [Bacteroides cellulosilyticus DSM 14838] Length = 294 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 81/308 (26%), Positives = 149/308 (48%), Gaps = 26/308 (8%) Query: 21 WLQN-----LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 WL N L+ ER S+ T++SY D QF F E+I + + +R +I Sbjct: 2 WLTNSFLDYLQYERNYSEETIKSYREDLCQFEKF----AREEIGDSALSGVKAELVREWI 57 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 + S+ R LS ++SF K+L ++ + + + K LP L E + Sbjct: 58 VSLMDKGYTSTSINRKLSSLRSFYKFLLRKGEVCVNPLQKITGPKNKKPLPTFLRESEMD 117 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L+D V + R+ I+ + Y G+R+SE + L +N+ +++ GK + Sbjct: 118 KLLDEVDFGEG----FKGCRDHMIIEMFYATGMRLSELIGLDDKNVDFSSLLIKVTGKRN 173 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYI-RQLR 251 K R++P ++ A++EY ++ N +Q F G+ L+ + + + R L Sbjct: 174 KQRLIPFGEELKNAMIEYVNV----RNEIVQARTDAFFVRESGERLSRSIVENLVKRNLS 229 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 + + L + H LRH+FAT +L++ +L +I+ +LGH L+TT++YT+ + + Sbjct: 230 KVVTLK-KRSPHVLRHTFATTMLNHDAELGAIKELLGHESLATTEVYTHTTFEE----LK 284 Query: 312 EIYDQTHP 319 ++Y+Q HP Sbjct: 285 KVYNQAHP 292 >gi|206602847|gb|EDZ39328.1| Putative phage integrase family protein [Leptospirillum sp. Group II '5-way CG'] Length = 314 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 98/315 (31%), Positives = 155/315 (49%), Gaps = 37/315 (11%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 ++L + G S T Q+Y D L LA F E +++ S ++ + ++R + Sbjct: 14 EDLRVASGRSPHTTQAYLLD----LFALARFLGEHGLSLL---DFSPEDVTRYFTRR--E 64 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITT-ESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS R LS I+S+ ++LK+R + + + + L + L ++ LP L+E++ L L++ Sbjct: 65 DLAMRSRSRVLSAIRSWSRFLKRRGLPSIDPDTLPVPRLPRN--LPGVLDEEEILRLLEA 122 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 T R+ AIL Y GLR+SE LT + + +R+ GKG K R+ Sbjct: 123 PDPKTDE-----GIRDRAILATFYASGLRVSELAELTLDRLNLKEEQIRVTGKGQKERVA 177 Query: 201 PLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR-----YIRQLRRY 253 L V A L Y + P + L L R G F R I+ + Sbjct: 178 -FLDGVSCARLRLYLERVRPSTSTSDKTLFLTRRQTG-------FTRQGLWLLIKGYAKQ 229 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G+ + + HTLRHSFATHLLS+G D+RSIQ +LGH + TT+IYT+V+ + + E Sbjct: 230 CGIDRNVSPHTLRHSFATHLLSHGMDIRSIQILLGHSDIQTTEIYTHVDIR----MLAED 285 Query: 314 YDQTHPSITQKDKKN 328 + HP Q D++ Sbjct: 286 LARYHPRGKQPDREQ 300 >gi|88607245|ref|YP_504674.1| tyrosine recombinase XerD [Anaplasma phagocytophilum HZ] gi|88598308|gb|ABD43778.1| tyrosine recombinase XerD [Anaplasma phagocytophilum HZ] Length = 311 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 90/315 (28%), Positives = 150/315 (47%), Gaps = 31/315 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L+ L +G+S+ T+ SY+CD FL + I SY ++ +I Sbjct: 8 RSFLEFLVSSKGVSENTVCSYKCDLEDLSQFL------RRNGLKIVDASYGDLCEYIRNL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + ++ R +S IK +L K +I L++ + + +LPR ++E L+ Sbjct: 62 NGRAYSAATVARRVSAIKGLCSFLYKDRIVHSDLSLSLESCRLGRTLPRVISESDIGMLL 121 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-------MDDQSTLRIQ 191 D S E K R AI+ +LY G+RISE + L I + D + I+ Sbjct: 122 DIAKADLSAEGK----RLYAIVNILYSSGVRISELIHLGFFEIDAMLHEHVGDIGYIIIK 177 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDL--CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 GKG++ R+V L +I Y ++ C LF G + + + ++ + Q Sbjct: 178 GKGNRERLVLLNEVAMDSIRAYLEVRKCFIAGENTESRWLFPGAK---YDQCISRQRVGQ 234 Query: 250 LRRYLGL-----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 L + L + P + H RHSFATHLL+NG ++ IQ +LGH LSTTQ+YT+V S+ Sbjct: 235 LLKELAISAGIDPEKVSPHKFRHSFATHLLNNGSNIVFIQKMLGHVNLSTTQVYTHVASE 294 Query: 305 NGGDWMMEIYDQTHP 319 + ++ + HP Sbjct: 295 Q----LRDVLSRFHP 305 >gi|57238849|ref|YP_179985.1| tyrosine recombinase xerD [Ehrlichia ruminantium str. Welgevonden] gi|58578779|ref|YP_196991.1| tyrosine recombinase xerD [Ehrlichia ruminantium str. Welgevonden] gi|57160928|emb|CAH57833.1| putative integrase/recombinase XerD or XerC [Ehrlichia ruminantium str. Welgevonden] gi|58417405|emb|CAI26609.1| Tyrosine recombinase xerD [Ehrlichia ruminantium str. Welgevonden] Length = 312 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 92/297 (30%), Positives = 148/297 (49%), Gaps = 31/297 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L + E+ +S T QSY D L F+ + + + ++S +++ ++ Sbjct: 11 FLTAIAAEKHISYNTYQSYMSD---LLDLCKFFDCKNLALI---EVSRDDLKDYVRLMHK 64 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 ++ ++ R +S IK+ K+ K I L++ + S +LP+ALN ++ L+D Sbjct: 65 REYKSSTISRKISAIKNLYKFFCKDNIIAYDPALSIDFPRLSRTLPKALNIEEVSRLLDT 124 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-------DQSTLRIQGK 193 L +S + R +AI+ +LY G+R+SE + L +I + + S + I+GK Sbjct: 125 AALDSSPD----GLRTNAIINILYSSGIRVSELIYLKLNSIKEALNNDNIEISYITIRGK 180 Query: 194 GDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 ++ RIV L + S++K + Y P I LF G + NP QR I Q Sbjct: 181 ANRERIVLLNSSAIVSIQKYLEVYMHFVPN--GYEISQWLFPGTKFD--NPITRQR-IGQ 235 Query: 250 LRRYLGLPLST-----TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 L + L + + H LRHSFATHLL+NG D+ IQ +LGH LSTTQIYT V Sbjct: 236 LLKDLSISAGVDMTRISPHKLRHSFATHLLNNGSDIIFIQKMLGHTSLSTTQIYTYV 292 >gi|238798591|ref|ZP_04642067.1| Tyrosine recombinase [Yersinia mollaretii ATCC 43969] gi|238717547|gb|EEQ09387.1| Tyrosine recombinase [Yersinia mollaretii ATCC 43969] Length = 263 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 73/266 (27%), Positives = 134/266 (50%), Gaps = 16/266 (6%) Query: 56 EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115 E++ + + L ++R+ +S+ + + SL LS ++SFL +L + + + Sbjct: 5 EQMGLAHWQTLDAAQVRSLVSRSKRAGLHASSLALRLSALRSFLNWLVSQGVLQANPAKG 64 Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175 + + LP+ ++ + L+D L + R+ A+L ++YG GLR+SE + Sbjct: 65 VSTPRSGRHLPKNIDVDEVDKLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVG 118 Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGI 233 + +++ + + GKG K R VP+ R A+ L ++ L +L +F Sbjct: 119 MNCKHVDLVGGEVWVMGKGSKERKVPI---GRTAVTWLNHW-LALRELFEPQDDAIFLAN 174 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 GK ++ Q+ + G+ H LRHSFATH+L + GDLR++Q +LGH L+ Sbjct: 175 TGKRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLT 234 Query: 294 TTQIYTNVNSKNGGDWMMEIYDQTHP 319 TTQIYT+++ ++ + +YD HP Sbjct: 235 TTQIYTHLDFQH----LATVYDAAHP 256 >gi|217969617|ref|YP_002354851.1| tyrosine recombinase XerD [Thauera sp. MZ1T] gi|217506944|gb|ACK53955.1| tyrosine recombinase XerD [Thauera sp. MZ1T] Length = 309 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 83/298 (27%), Positives = 140/298 (46%), Gaps = 20/298 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E GL++ TL Y D +F +L + +Y + +K +Q+ Sbjct: 27 LWLEHGLARNTLAGYRSDLARFAAWLETRAQRLPAAAGADLAAYLAEFSRAAKPASQR-- 84 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 R ++ + + + L + E L + + + P+ L+E Q L+ L Sbjct: 85 -----RLIAAWRRYYRLLLANREIAEDPTLAIDTPRAAERFPKTLSEPQVEALLAAPALD 139 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 T R+ +L +LY GLR+SE + L + ++ +R+ GKG K R+VPL Sbjct: 140 TPQGL-----RDRCMLEVLYAAGLRVSELVGLKIFAVGVNEGVVRVMGKGSKERLVPL-G 193 Query: 205 SVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTT 261 + L+ Y + P L +F G ++ +F R I+ G+ P + Sbjct: 194 EIAADWLQRYLAEARPVLLAGRSCDEIFVTRLGAAMSRQMFWRLIKHYALAAGIAPERIS 253 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V + + +++ + HP Sbjct: 254 PHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARER----LKQLHARHHP 307 >gi|288803800|ref|ZP_06409227.1| tyrosine recombinase XerD [Prevotella melaninogenica D18] gi|288333707|gb|EFC72155.1| tyrosine recombinase XerD [Prevotella melaninogenica D18] Length = 294 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 76/306 (24%), Positives = 149/306 (48%), Gaps = 23/306 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L ++ ER S +T+ +Y D +F E+ + QLS+ I + I + Sbjct: 5 EKFLDYIKFERNYSPMTVINYRKDLTEF---------ERFYKELEPQLSWESIDSDIVRN 55 Query: 79 RTQKIGDR-----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 + + DR S+ R LS ++SF ++ +RK+ + + ++ KK LP+ L E + Sbjct: 56 WMEYMMDRGNSASSVNRRLSALRSFYQFALRRKLIEKDPVHGLQGPKKQKPLPQFLKESE 115 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L+D+ + S++ D I+ Y G+R+SE + L ++I + +++ GK Sbjct: 116 MERLLDSKMWTDSYK----DVLERTIIITFYVTGIRLSELIGLDDKDIDNVTCEVKVTGK 171 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 +K RIVP + +Y ++ + + + F+ +GK + + +++ Sbjct: 172 RNKQRIVPFGKELADVFAQYQEVRNTTVKGD-SIAFFQTEKGKRMTTAQVRTLVKKNLSK 230 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 + + H LRH+FAT +L++ L S++ +LGH LSTT+IYT+ + + ++ Sbjct: 231 VSTLKKRSPHVLRHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHTTFEQ----LKKV 286 Query: 314 YDQTHP 319 Y HP Sbjct: 287 YKNAHP 292 >gi|114320950|ref|YP_742633.1| integron integrase [Alkalilimnicola ehrlichii MLHE-1] gi|114227344|gb|ABI57143.1| integron integrase [Alkalilimnicola ehrlichii MLHE-1] Length = 462 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 87/316 (27%), Positives = 143/316 (45%), Gaps = 60/316 (18%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87 RGL+ T ++Y T +F++FL + + +++ F+S+ TQ+ + + Sbjct: 159 RGLAISTEKTYLAWTCRFIVFL--------QSKPVESADEADVQQFLSQLVTQRNVAAST 210 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 ++L+ + F +Y+ +R + + + K+ LP L+ + L+ +H H Sbjct: 211 QSQALNALVFFFRYVLQRPL---GELQAIERSKRPRRLPVVLSRNEVKALLSE--MHGVH 265 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPL---- 202 + LLYG G+R+ EAL L ++I ++ + ++ GKGDK R+VPL Sbjct: 266 HL---------LASLLYGSGMRVMEALRLRVKDIDFERRAITVRSGKGDKDRVVPLPEST 316 Query: 203 ---------------------------LPSV-----RKAILEYYDLCPFDLNLNIQLPLF 230 LP R A E++ F P Sbjct: 317 IAPLQNHLRQVKAIHEGDLADGYGEASLPHALARKYRNAGKEWHWQYVFPSARVAVDPRS 376 Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290 IR L+ QR +++ R +P + HTLRHSFATHLL G D+R++Q +LGH Sbjct: 377 GAIRRHHLHETAVQRAVKRAVRASRIPKQASCHTLRHSFATHLLERGQDIRTVQELLGHA 436 Query: 291 RLSTTQIYTNVNSKNG 306 +STT IYT+V SK G Sbjct: 437 DVSTTMIYTHVMSKGG 452 >gi|300703191|ref|YP_003744793.1| site-specific tyrosine recombinase [Ralstonia solanacearum CFBP2957] gi|299070854|emb|CBJ42155.1| site-specific tyrosine recombinase [Ralstonia solanacearum CFBP2957] Length = 308 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 87/305 (28%), Positives = 142/305 (46%), Gaps = 22/305 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q + L +E GL++ TL +Y D + +LA + I Q ++ + + R Sbjct: 20 QRFCDALWLEDGLARNTLDAYRRDLTLYAQWLAGRG------KAIDQTEDDDLADYFAAR 73 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + +R + K F ++ + + + K+ +P+ L+E Q L+ Sbjct: 74 HEASRASTANRRR-TVFKRFFQWALREHVVGADPSRLLSTAKQPPRIPKTLSEAQVEALI 132 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGDKI 197 + T + R+ A++ L+Y GLR+SE ++L + ++ +R I GKG K Sbjct: 133 AAPDVDTP-----LGLRDRAMIELMYASGLRVSEIVALKSVEVGLNEGVVRVIGGKGGKD 187 Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ--LRRYL 254 R+VP + Y D L LF RG + F I++ LR + Sbjct: 188 RLVPFGAEAGDWLRRYLRDGRTALLGKRTADALFVTARGDGMTRQAFWHLIKRYALRADI 247 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 PLS HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V + + ++ Sbjct: 248 HAPLSP--HTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARER----LRTLH 301 Query: 315 DQTHP 319 Q HP Sbjct: 302 AQHHP 306 >gi|145641992|ref|ZP_01797565.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae R3021] gi|145273358|gb|EDK13231.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae 22.4-21] Length = 185 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 67/177 (37%), Positives = 92/177 (51%), Gaps = 14/177 (7%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211 ID R+ AIL L+Y GLR+SE L +I +R+ GKG+K R+VP AI Sbjct: 18 IDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYASHAIQ 77 Query: 212 EYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 E+ + P D LF G ++ Q+ + GL H LRH Sbjct: 78 EWLKVRALFNPKDE------ALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRH 131 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 SFATH+L DLR++Q +LGH LSTTQIYT++N ++ + E+YDQ HP +K Sbjct: 132 SFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQH----LAEVYDQAHPRAKRK 184 >gi|16082303|ref|NP_394769.1| site-specific integrase/recombinase XerD related protein [Thermoplasma acidophilum DSM 1728] gi|10640657|emb|CAC12435.1| site-specific integrase/recombinase XerD related protein [Thermoplasma acidophilum] Length = 283 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 88/290 (30%), Positives = 137/290 (47%), Gaps = 32/290 (11%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 S+ T++ Y QFL F+ +E + R ++ ++ SK S + Sbjct: 22 SRYTIKEYRFLVDQFLSFMNKKPDEITPMDIERYKNFLAVKKRYSKT--------SQYLA 73 Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 + +K F K L R +N+ K+ + +P L+E +A L+ E Sbjct: 74 IKAVKLFYKALDLRVP------INLTPPKRPSHMPVYLSEDEAKRLI---------EAAS 118 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAI 210 D R AI+ +L G+R+ E +L ++ +S + ++ GKGDK RIV + KA+ Sbjct: 119 SDTRMYAIVSVLAYTGVRVGELCNLKISDVDLQESIINVRSGKGDKDRIVIMAEECVKAL 178 Query: 211 LEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 Y DL D + + LF R + +R IR L + G+ T H LRH+F Sbjct: 179 GSYLDLRLSMDTDNDY---LFVSNRRVRFDTSTIERMIRDLGKKAGIQKKVTPHVLRHTF 235 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 AT +L NGGD+R IQ ILGH ++TTQIYT++N + E+Y Q P Sbjct: 236 ATSVLRNGGDIRFIQQILGHASVATTQIYTHLNDS----ALREMYTQHRP 281 >gi|240145649|ref|ZP_04744250.1| integrase/recombinase XerD [Roseburia intestinalis L1-82] gi|257202271|gb|EEV00556.1| integrase/recombinase XerD [Roseburia intestinalis L1-82] Length = 218 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 113/226 (50%), Gaps = 11/226 (4%) Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 +K+F +L+K + ++ K ++PR L ++ L++ +T E Sbjct: 1 MKAFFHFLEKERRIESDPAWRLKAPKIEKTMPRILTTEEVTFLLEQPSGNTPKEL----- 55 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ A+L LLY G+R+SE +SL + ++ Q I K RI+P R+A+ Y Sbjct: 56 RDKAMLELLYATGIRVSELISLKVSD-LNLQMEYVICTDIHKERIIPFGNVAREALTRYM 114 Query: 215 DLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 L P LF G ++ F + I+ + G+ T HTLRHSFA HL Sbjct: 115 QDGRDHLISQADCPWLFTNCTGGAMSRQGFWKLIKFYGKKAGIESEITPHTLRHSFAAHL 174 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 +SNG DL+S+Q +LGH +STTQIY S+ G + E+Y + HP Sbjct: 175 ISNGADLKSVQEMLGHSDISTTQIY----SQMGQGRIREVYLKAHP 216 >gi|302383500|ref|YP_003819323.1| integrase [Brevundimonas subvibrioides ATCC 15264] gi|302194128|gb|ADL01700.1| integrase family protein [Brevundimonas subvibrioides ATCC 15264] Length = 300 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 73/228 (32%), Positives = 113/228 (49%), Gaps = 16/228 (7%) Query: 98 FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157 F ++ T+ + K+ LPR LN ++ + L L ++ R Sbjct: 78 FYRFAMGEGWRTDDPSRRLDAPKQGRPLPRTLNREEVVGL----LTASAARDGAAGLRMI 133 Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 A++ L Y GLR+SE L L + + D + L ++GKG K R+ PL S R+A+ + L Sbjct: 134 ALVELAYASGLRVSELLGLRVEAVRRDPAYLIVRGKGGKERLAPLNASAREAVKAW--LI 191 Query: 218 PFDLNLNIQLP----LF-RGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFAT 271 D + P LF G L P F + + Q G+ P + H LRH+FAT Sbjct: 192 ARDARRPEKAPDSPWLFPSGAASGHLTPRRFAQMLDQAAVDAGIDPARVSPHVLRHAFAT 251 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HLL G DLR +Q++LGH ++TTQIYT+V + D + ++ ++ HP Sbjct: 252 HLLEGGADLRVVQTLLGHADIATTQIYTHVAT----DRLTQVVNRHHP 295 >gi|262202039|ref|YP_003273247.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262085386|gb|ACY21354.1| integrase family protein [Gordonia bronchialis DSM 43247] Length = 304 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 85/304 (27%), Positives = 142/304 (46%), Gaps = 19/304 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 + +L +E G S T+++Y D R + AF + I T +RA++++ Sbjct: 14 EFADHLRLEMGRSPHTVRAYVGDVRGLI---AFAGARGVATADI---DLTLLRAWLAEHT 67 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + ++ R +S +K+F + + + ++ +R K +LP L Q V Sbjct: 68 RRGAARTTIARQVSSVKTFCAWAVREGLMSDDPSHRLRAPKAHRTLPAVLAPAQ----VP 123 Query: 140 NVLLHTSHETKWIDA---RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 +V+ + E D R++ I+ +LY G+R+ E L ++ D+ LR+ GKGDK Sbjct: 124 DVIAAAAAERPQGDPIALRDTVIVEVLYAGGIRVGELCGLDVDDVDRDRRVLRVIGKGDK 183 Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 R VP A+ + P L G RG L+ + + + + G Sbjct: 184 ERTVPYGAPAAVALDAWLRHGRPALATERSGAALLLGARGGRLDQRMARTVVTRAVEQAG 243 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 P + H LRHS ATHLL G DLR +Q +LGH L+TTQIYT+V+ + + +++ Sbjct: 244 GP-AMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQIYTHVSVER----LRAVHN 298 Query: 316 QTHP 319 Q HP Sbjct: 299 QAHP 302 >gi|28572274|ref|NP_789054.1| DNA recombinase [Tropheryma whipplei TW08/27] gi|28410405|emb|CAD66791.1| putative DNA recombinase [Tropheryma whipplei TW08/27] Length = 349 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 95/333 (28%), Positives = 157/333 (47%), Gaps = 55/333 (16%) Query: 26 EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS--KRRTQKI 83 ++E GLS TLQ+Y I+L++ E+ Q + +++ I F+ +R T+K Sbjct: 30 KLELGLSDATLQTYR---NSLGIYLSWLGEQGT--QRLSEVNSNAIERFLEYRQRHTRK- 83 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL- 142 +L +++ +++F ++L + LN + +P+AL +L + N+L Sbjct: 84 --STLANTVAALRTFHRHL----VLEGRQALNPTEKLQQPKVPKALPHPLSLDEIINLLK 137 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGKGDKIRIVP 201 +++ + I R+ A++ +LYG G RISEA+SL + DQ+ LR+ GKG+K R+V Sbjct: 138 AADANQAREISLRDRALIEVLYGTGARISEAVSLNVNAFAESDQNLLRLTGKGNKQRMVL 197 Query: 202 LLPSVRKAILEYYD------LCPFDLNLNIQ----------------------------L 227 R A+ Y L + NI + Sbjct: 198 FGSYARNAVDNYLQHSRPKLLARSHVYRNITDASTLKYRPTSSTIGDAEDGVLTATAAGV 257 Query: 228 P-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286 P LF RGK L IR+L + + H+LRHSFATH+L G D+R++Q + Sbjct: 258 PWLFLSNRGKRLTRQQAGNIIRKLGEAAEIGRYISPHSLRHSFATHMLQAGADIRTVQEL 317 Query: 287 LGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LGH ++TT +YT V D + E+Y +HP Sbjct: 318 LGHSSINTTSVYTKVTI----DSLREVYTTSHP 346 >gi|329962250|ref|ZP_08300256.1| putative tyrosine recombinase XerC [Bacteroides fluxus YIT 12057] gi|328530358|gb|EGF57235.1| putative tyrosine recombinase XerC [Bacteroides fluxus YIT 12057] Length = 294 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 80/307 (26%), Positives = 149/307 (48%), Gaps = 25/307 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++L L ER S+ T++ Y D ++ L + +E + T + +R +I+ Sbjct: 5 DSFLDYLLYERNYSEGTVKYYRSD----ILELQDFGKEMLGDLTPSDIDAELVREWIASL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + ++ R LS I+++ K+L +R + + KK LP L E + L+ Sbjct: 61 MDRGCASSTINRKLSSIRAYYKFLLRRGEVAVDPLRKITGPKKKKPLPVFLREGEMDKLL 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D+ E RN I+ + Y G+R+SE + L +++ S +++ GK +K R Sbjct: 121 DDTDFGEGFEG----CRNHLIIEMFYATGMRLSELIGLDDKDVDYSASLIKVTGKRNKQR 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-----FRGIRGKPLNPGVFQRYI-RQLRR 252 ++P ++ ++ EY ++ N +P+ F GK L + + R L + Sbjct: 177 LIPFDEELKFSMQEYVNV------RNETIPVRSDAFFVRENGKRLYRSIVAYLVKRNLSK 230 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 + + + H LRH+FAT +L+NG DL SI+ +LGH L+TT++YT+ + + + Sbjct: 231 VVTVK-KRSPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHTTFEE----LKK 285 Query: 313 IYDQTHP 319 +Y+Q HP Sbjct: 286 VYNQAHP 292 >gi|313682300|ref|YP_004060038.1| tyrosine recombinase xerd subunit [Sulfuricurvum kujiense DSM 16994] gi|313155160|gb|ADR33838.1| tyrosine recombinase XerD subunit [Sulfuricurvum kujiense DSM 16994] Length = 273 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 122/237 (51%), Gaps = 28/237 (11%) Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE---KQALTLVDNVL 142 R+L R LS SFL + + + + S ++ + K+ LP+ + + L ++D Sbjct: 60 RTLNRKLSAFNSFLDFCHRNRFDSLSTKFSLSKVPKN--LPKYVTYETIQAGLGMIDR-- 115 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202 + WI R+ A++ LY G RISEAL +I + +R GKG+K R VP+ Sbjct: 116 ------SDWIGLRDYALILFLYATGSRISEALIAEEGDIEIEWLRIR-HGKGEKERYVPI 168 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTT 261 KA+ Y + P++ + L+ RG+PL+ F+ I Q +YLG+ + Sbjct: 169 AHEALKALRAYQEASPYN-----KPYLWLNYRGEPLSRISAFK--ITQ--KYLGV----S 215 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 H LRHS+AT L+ G DLR +Q +LGH L TTQIYT+V +N + ++ + H Sbjct: 216 PHALRHSYATALILGGADLRVVQELLGHASLLTTQIYTHVQKQNLQETVLRHHPMAH 272 >gi|18978240|ref|NP_579597.1| integrase-recombinase protein [Pyrococcus furiosus DSM 3638] gi|73920477|sp|Q8TZV9|XERC_PYRFU RecName: Full=Probable tyrosine recombinase xerC-like gi|18894057|gb|AAL81992.1| integrase-recombinase protein [Pyrococcus furiosus DSM 3638] Length = 286 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 90/297 (30%), Positives = 146/297 (49%), Gaps = 39/297 (13%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDT-RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 R+ L++ +E + L L+ +T R + FL+ + EE + L F++ Sbjct: 2 REKTLRSEVLEEFATYLELEGKSKNTIRMYTYFLSKFLEEGYSPTARDALR------FLA 55 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 K R + RS+ + +K++ K+ + E+ +RN K +LP++L E++ Sbjct: 56 KLRAKGYSIRSINLVVQALKAYFKF---EGLNEEAE--RLRNPKIPKTLPKSLTEEEVKK 110 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGD 195 L++ + R+ I+ LLYG GLR+SE +L ++I ++ L ++G KG Sbjct: 111 LIEVIPKD--------KIRDRLIVLLLYGTGLRVSELCNLKIEDINFEKGFLTVRGGKGG 162 Query: 196 KIRIVP----LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK---PLNPGVFQRYIR 248 K R +P LL ++ + D P+ LF R K L+P R ++ Sbjct: 163 KDRTIPIPQPLLTEIKNYLRRRTDDSPY---------LFVESRRKNKEKLSPKTVWRILK 213 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + R G+ T H LRHSFATH+L G D+R IQ +LGH LSTTQIYT V +K+ Sbjct: 214 EYGRKAGI--KVTPHQLRHSFATHMLERGIDIRIIQELLGHASLSTTQIYTRVTAKH 268 >gi|260909719|ref|ZP_05916413.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str. F0295] gi|260636144|gb|EEX54140.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str. F0295] Length = 293 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 84/306 (27%), Positives = 145/306 (47%), Gaps = 23/306 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L+ E S+LT+ SY D R F F + K T QLS+ I A I + Sbjct: 4 EQFLNYLQYELNRSELTIASYGDDLRAFEAFF----KNKDT-----QLSWEAIDADIIRD 54 Query: 79 RTQKIGDR-----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 + + D+ +++R LS ++SF ++ R T++ + K+S LP+ L E + Sbjct: 55 WMESMMDKGCSATTIQRRLSALRSFYRFGLTRGYVTKNPARGIVGPKRSRPLPQFLREAE 114 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L+D+V S+ + I+ Y G+R++E + L +I + +++ GK Sbjct: 115 IDRLLDDVPAGDSYR----ELLAYTIVLTFYSTGMRLAELVGLDDDSIDFETRVIKVLGK 170 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 G K R++P + + + Y ++ + F G+ + G Q +R Sbjct: 171 GSKQRLIPFADELEEGLKTYITRRDAEVTRKSK-AFFVDRHGERVKRGAVQNSVRASLAK 229 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 + + H LRHSFAT +L+N L S++ +LGH LSTT+IYT+ + + I Sbjct: 230 VTSMKKRSPHVLRHSFATAMLNNEAGLESVKKLLGHESLSTTEIYTHTTFEQ----LRRI 285 Query: 314 YDQTHP 319 YD+ HP Sbjct: 286 YDKAHP 291 >gi|163736279|ref|ZP_02143698.1| phage integrase [Phaeobacter gallaeciensis BS107] gi|161390149|gb|EDQ14499.1| phage integrase [Phaeobacter gallaeciensis BS107] Length = 337 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 84/308 (27%), Positives = 140/308 (45%), Gaps = 22/308 (7%) Query: 7 PEIVSFELLKERQNWLQNL----EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62 P S K+ W+ + G ++ TL +Y D + +L + Sbjct: 4 PAAQSANAPKDDLQWIATFLDAQAADLGAARNTLLAYGRDLKDVASWLGHKN------RA 57 Query: 63 IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122 + +I +++ + + + R LS IK ++ +++ + ++ + Sbjct: 58 FGSATRDDIESYLIACDAEGLARATRARRLSAIKQIYRFAFDEGWRSDNPAIQIKGPGRQ 117 Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 +LP+ L + L+D + + + RN+ ++ LLY G+R+SE + L Sbjct: 118 KALPKTLEVIEVDRLLDAARQSGRNLSDRL--RNTCMMELLYATGMRVSELVGLPVAAAR 175 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLP---LF--RGIR 234 D L + GKG K R+VPL P R A+ + D P LF RG Sbjct: 176 GDPRMLLVLGKGGKERMVPLSPPARDALAAWLTTRDAAEEAAVAKGAAPSRFLFPSRGKS 235 Query: 235 GKPLNPGVFQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 G L F I++ GLP + + HTLRH+FATHLL+NG DLR+IQ++LGH ++ Sbjct: 236 GH-LTRHRFYLLIKEFAVAGGLPPEAVSPHTLRHAFATHLLTNGADLRAIQALLGHADIA 294 Query: 294 TTQIYTNV 301 TT+IYT+V Sbjct: 295 TTEIYTHV 302 >gi|188581692|ref|YP_001925137.1| tyrosine recombinase XerD [Methylobacterium populi BJ001] gi|179345190|gb|ACB80602.1| tyrosine recombinase XerD [Methylobacterium populi BJ001] Length = 332 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 86/293 (29%), Positives = 137/293 (46%), Gaps = 24/293 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +L L ERG + TL +Y D +L +LA ++ I + + ++RA+I+ Sbjct: 17 QLFLDMLAAERGAAANTLAAYRRDLDDYLGYLA---QQGIDPE---EAQADQVRAYIASL 70 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + S R LS I+ F ++L + +++ LP+ L+ + V Sbjct: 71 EPRGLKASSAARRLSCIRGFHRFLYAEGYCETDPTAPVAAPRRAKGLPKILSVAE----V 126 Query: 139 DNVLLHTSHETKWI-----DARNSA----ILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 D +L + +AR++A +L LLY GLR+SE ++L + L Sbjct: 127 DRLLATARDRVEAAGDDRTEARSAARMLCLLELLYATGLRVSELVALPRSAASARERYLV 186 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 ++GKG + R+VPL R+A+ + D G L F R ++ Sbjct: 187 VKGKGGRERLVPLTELAREAMRAHVAHLTADGAWLFPADSESGH----LTRQAFARDLKV 242 Query: 250 LRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 GL + H LRH+FA+HLL NG DLR +Q +LGH +STTQIYT+V Sbjct: 243 AAAAAGLRTDRVSPHVLRHAFASHLLQNGADLRIVQELLGHADVSTTQIYTHV 295 >gi|309807963|ref|ZP_07701891.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 01V1-a] gi|308168814|gb|EFO70904.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 01V1-a] Length = 166 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 57/154 (37%), Positives = 90/154 (58%), Gaps = 5/154 (3%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ AIL LY G+R+SE ++L +I ++ +++ GKG K R++P+ +V + ++ Y Sbjct: 14 RDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIPI-SNVAMSWIKKY 72 Query: 215 DLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 + + L + +F RG + + I++ + G+ + T HTLRH+FA Sbjct: 73 QITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLAGINKNVTPHTLRHTFA 132 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 THLL NG DLR +Q ILGH +STTQIYTN+ K Sbjct: 133 THLLENGADLRIVQEILGHSDISTTQIYTNLTQK 166 >gi|288956928|ref|YP_003447269.1| integrase/recombinase [Azospirillum sp. B510] gi|288909236|dbj|BAI70725.1| integrase/recombinase [Azospirillum sp. B510] Length = 355 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 88/323 (27%), Positives = 147/323 (45%), Gaps = 47/323 (14%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L ERG + T +YE D +LA + + ++ ++RA+++ + Sbjct: 44 FLDMLTAERGAAVNTRLAYERDLADLGRWLA---QRGVALEGA---GTEDLRAYLAVQ-G 96 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + R++ R LS ++ F ++L ++ + + K+ LP+ L+E + Sbjct: 97 KDGAPRTVARRLSAMRQFYRFLLSEGRRSDDPASPLDSPKQGRPLPKILSEAEV-----G 151 Query: 141 VLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 +L T+ + R A+L +LY GLR+SE + L IM D L ++GKG K R+ Sbjct: 152 AMLSTAEARGGPEGLRLVALLEVLYATGLRVSELVGLPMTAIMRDGRGLLVRGKGGKERM 211 Query: 200 VPLLPSVRKAILEYYDL----------------------CPFDLNLNIQLPLFRGIRGKP 237 VPL A+ Y + PF I + Sbjct: 212 VPLSDPALAALAAYIPVRAHFIPPGTGAGGGGAGGEGGHSPFLFPSRISAEGY------- 264 Query: 238 LNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 L F + ++QL G+ P + H LRH+FATHLL +G DLRS+Q +LGH ++TTQ Sbjct: 265 LTRQRFAQLLKQLAIDAGIDPEKVSPHVLRHAFATHLLDHGADLRSVQKMLGHADIATTQ 324 Query: 297 IYTNVNSKNGGDWMMEIYDQTHP 319 IYT+V ++ + ++ HP Sbjct: 325 IYTHVVTER----LRKVMHDHHP 343 >gi|260894011|ref|YP_003240105.1| integrase family protein [Ammonifex degensii KC4] gi|260866150|gb|ACX53255.1| integrase family protein [Ammonifex degensii KC4] Length = 288 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 77/287 (26%), Positives = 140/287 (48%), Gaps = 25/287 (8%) Query: 20 NWLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 +WL E+ RGLS ++++Y R+F+ + + E + + L + R ++ Sbjct: 3 DWLSGFEVSCLRRGLSPSSVRAYLGVVRRFVAWWEGTSGEAFDPRAVTPLDVADYRRYL- 61 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 R + + ++ +L +KSF ++LK+ + ++ ++ + + PR L ++ Sbjct: 62 --RGRGLKPATVNFNLEAVKSFFRWLKEERALPDNPAEGVKKVPEVKPSPRWLTRREVGL 119 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQ-GK 193 L V + + ++ A+ LL GLR+SEA+SL ++++ + +R++ GK Sbjct: 120 LARAVQRYGT-------VKDRALFALLLHAGLRVSEAVSLRLEDVVVRERSGFVRVRYGK 172 Query: 194 GDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 G K R VPL +VR+ + EY +L P LF G +G P+ P Q+ ++ R Sbjct: 173 GGKYREVPLNVTVRRVLKEYLAELPPQGGGW-----LFPGKKG-PMTPRAVQKRLKFFGR 226 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 G+ T H LRH+F L+ G L + + GH RL TT +YT Sbjct: 227 IAGV--EVTPHKLRHTFCKWLIDAGESLDKVALLAGHARLDTTAVYT 271 >gi|317405888|gb|EFV86170.1| integrase/recombinase [Achromobacter xylosoxidans C54] Length = 327 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 80/295 (27%), Positives = 135/295 (45%), Gaps = 26/295 (8%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLA---FYTEEKI---------------TIQTIRQLSY 68 +E GLS TL +Y D F +L Y E + + + Sbjct: 23 LEDGLSANTLAAYRRDLTGFARWLEDPEAYAREMADRYGDAASAHALPAGPAKALAEAGK 82 Query: 69 TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 +I A+ + R + + R L+ ++ F + + L + K+ LP+ Sbjct: 83 ADIEAWFAFRHEETRAT-TANRRLAALRRFYAWALREHRAAHDPCLTLVAAKQPPRLPKT 141 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 L+E+Q + LL + R+ A+L +LY GLR+SE + + ++ ++ + Sbjct: 142 LSEQQV-----DALLRAPDLNEPRGLRDRAMLEMLYATGLRVSELVGVRALDVSLNEGVV 196 Query: 189 RIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRY 246 R+ GKG K R+VPL I +Y +L + LF R + ++ F + Sbjct: 197 RVVLGKGGKDRLVPLGAEAAHWIDQYMKTARPELAAGRVSDALFITGRAEAMSRQAFWQL 256 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +++ G+ + H LRH+FATHLL++G DLR +Q +LGH +STTQIYT+V Sbjct: 257 VKKYAVLAGVHAPLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHV 311 >gi|121601884|ref|YP_988378.1| tyrosine recombinase XerD [Bartonella bacilliformis KC583] gi|120614061|gb|ABM44662.1| tyrosine recombinase XerD [Bartonella bacilliformis KC583] Length = 312 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 86/317 (27%), Positives = 151/317 (47%), Gaps = 24/317 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY--TEIRAFISKR 78 +L+ + ERG S TL +Y+ D + + ++K++ ++ S ++ + +S Sbjct: 10 FLEMMSAERGASAHTLAAYQHDLQ--------WAQDKLSSCSVSLFSARKEDLISLLSLM 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ F ++L K+ + ++ ++ + LP+ ++E L+ Sbjct: 62 HKAGFAATSQARRLSTLRQFYQFLYAEKLREDDPSGDIDAPRQGHPLPKIMSEDVVTKLL 121 Query: 139 DNVLLHTSH-----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 D L T+ + + R ++ +LY GLRISE +SL Q + + + ++GK Sbjct: 122 DFAQLETNQAEYGSKNYFRALRLQVLIEMLYATGLRISELVSLPVQTVRGKEQYILVRGK 181 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVF-QRYIRQLR 251 G K R+V L R+ + E+ L D + P LF F R ++ L Sbjct: 182 GGKERMVLLSAKARQVLSEW--LVLRDQGKDATSPYLFPAHSSTGYIARQFIARGLKDLA 239 Query: 252 RYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 + G+ + H LRH+FA+HLL NG DLR++Q +LGH +STTQIYT+V + Sbjct: 240 KRAGIRGDCFSPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQIYTHVLETG----L 295 Query: 311 MEIYDQTHPSITQKDKK 327 + ++ HP Q K Sbjct: 296 YHLVNEHHPLADQDKAK 312 >gi|241758661|ref|ZP_04756775.1| tyrosine recombinase XerD [Neisseria flavescens SK114] gi|241321172|gb|EER57368.1| tyrosine recombinase XerD [Neisseria flavescens SK114] Length = 293 Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 83/283 (29%), Positives = 139/283 (49%), Gaps = 20/283 (7%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ--TIRQLSYTEIRAFISKRR 79 L++L ++ LS TLQSY D + LA ++ ++ + Y E S+ Sbjct: 12 LESLWLQDRLSHNTLQSYRRDLVKVAARLAECGQDWLSADEFALSDSVYAEGEKSTSQ-- 69 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 R+LS K +L++ ++ ++ K LP + E Q L+ Sbjct: 70 ---------ARALSACKRMYGWLEETGQRADNPTRFLKAPKSERKLPTLITEAQIDALLA 120 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + TSH R+ A+L ++Y GLR++EA+ LT +I + ++R GKGDK+R+ Sbjct: 121 APDVETSH-----GLRDKALLEVMYATGLRVTEAVKLTLSDIDLHRGSIRTIGKGDKLRL 175 Query: 200 VPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VPL + Y + P L I +F + ++ + +++ G+ Sbjct: 176 VPLGQEAAYWVERYCNESRPLLLKNKICDEVFVSQKRSGISRQLAWMIVKEYAEAAGIA- 234 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 S + H LRH+FATHL+++G DLRS+Q +LGH ++TTQIYT+V Sbjct: 235 SLSPHGLRHAFATHLVNHGVDLRSVQMMLGHSDINTTQIYTHV 277 >gi|306843458|ref|ZP_07476059.1| tyrosine recombinase XerD [Brucella sp. BO1] gi|306276149|gb|EFM57849.1| tyrosine recombinase XerD [Brucella sp. BO1] Length = 307 Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 91/302 (30%), Positives = 134/302 (44%), Gaps = 38/302 (12%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +N+L+ + ERG ++ TL+SY D LA +T IR + Sbjct: 8 ENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAET------GHIRMTLDTM 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q S R LS ++ F ++L + + KK LP+ ++ + L+ Sbjct: 62 AAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGKLL 121 Query: 139 DNVLLHTSHET---KWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 D L + I A R A+L LY GLR+SE + L D L ++GKG Sbjct: 122 DRAALEADEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKG 181 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----------- 243 K R+VPL R+A+ ++ L L LP G NP +F Sbjct: 182 SKDRMVPLSRKAREALQKF-------LTLRDSLP------GSDDNPWLFPAFSESGHLAR 228 Query: 244 QRYIRQLRRYLGLPLS----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 Q + R+L+ + H LRH+FA+HLL NG DLR++Q +LGH +STTQIYT Sbjct: 229 QVFARELKGLAARAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYT 288 Query: 300 NV 301 +V Sbjct: 289 HV 290 >gi|254718076|ref|ZP_05179887.1| site-specific tyrosine recombinase XerD [Brucella sp. 83/13] gi|306837278|ref|ZP_07470164.1| tyrosine recombinase XerD [Brucella sp. NF 2653] gi|306407650|gb|EFM63843.1| tyrosine recombinase XerD [Brucella sp. NF 2653] Length = 307 Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 91/302 (30%), Positives = 135/302 (44%), Gaps = 38/302 (12%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +N+L+ + ERG ++ TL+SY D LA +T IR + Sbjct: 8 ENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAET------GHIRMTLDTM 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q S R LS ++ F ++L + + KK LP+ ++ + L+ Sbjct: 62 AAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGKLL 121 Query: 139 DNVLLHTSHET---KWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 D L + + I A R A+L LY GLR+SE + L D L ++GKG Sbjct: 122 DRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKG 181 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----------- 243 K R+VPL R+A+ ++ L L LP G NP +F Sbjct: 182 SKDRMVPLSRKAREALQKF-------LTLRDSLP------GSDDNPWLFPAFSESGHLAR 228 Query: 244 QRYIRQLRRYLGLPLS----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 Q + R+L+ + H LRH+FA+HLL NG DLR++Q +LGH +STTQIYT Sbjct: 229 QVFARELKGLAARAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYT 288 Query: 300 NV 301 +V Sbjct: 289 HV 290 >gi|124006143|ref|ZP_01690979.1| integrase, site-specific recombinase [Microscilla marina ATCC 23134] gi|123988320|gb|EAY27973.1| integrase, site-specific recombinase [Microscilla marina ATCC 23134] Length = 296 Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 79/292 (27%), Positives = 141/292 (48%), Gaps = 16/292 (5%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 S+ T+ SY D +QF + Y +E ++ + IR+++ + +K S+ R Sbjct: 15 SQNTITSYNHDLQQF----STYLQEIHRLEEPEHADHNMIRSWVLQLTEEKANVTSINRK 70 Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 ++ +KSF KYL+ + ++ ++ +K P + E++ L L++ V E Sbjct: 71 IATLKSFYKYLQNQGFIKKNPAQRLKPMKVPKKAPIFVEEEKMLQLLNTVQYPAGIE--- 127 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG----DKIRIVPLLPSVR 207 R+ + +LYG G+R+SE ++L Q++ + +RI K +K R + + + Sbjct: 128 -GLRDKFTIEILYGTGMRLSELINLQIQHVDFQKLRIRIPEKNNLKKEKERNISVAKPLL 186 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 + +Y + + GKP P + R +++ + + + H LRH Sbjct: 187 DLLQQYEKSKQQTYGKLVHNHVLVTDEGKPAYPMLIYRTVKKYLQLITDQEKKSPHVLRH 246 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 SFATHLL+ G DL ++ +LGH LSTTQ Y S N D + EI++Q HP Sbjct: 247 SFATHLLNKGADLHEVKDMLGHTTLSTTQAY----SHNSLDQIKEIFNQAHP 294 >gi|221068555|ref|ZP_03544660.1| tyrosine recombinase XerD [Comamonas testosteroni KF-1] gi|220713578|gb|EED68946.1| tyrosine recombinase XerD [Comamonas testosteroni KF-1] Length = 318 Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 80/302 (26%), Positives = 146/302 (48%), Gaps = 17/302 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++ L +E GLS TL +Y D +LA K+ + +++ + + R Sbjct: 30 EFIDALLLEDGLSHNTLSAYRRDLTAAARWLAQLQPPKVLDAALE----ADLQGYFTAR- 84 Query: 80 TQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S R L+ ++ + + L++++I + + M K+ P+ L ++Q L+ Sbjct: 85 VEGTKATSSNRRLTVLRRYFHWALREKRIAADPTV-RMLAAKQPPRTPKTLTQEQVEALL 143 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + T+ + R+ A+L L+Y GLR+SE + + + LR+ GKG K R Sbjct: 144 DAPDVETA-----LGLRDRAMLELMYASGLRVSELVGVRMHELDLRSGVLRVTGKGRKER 198 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP + + Y + Q +F RG ++ +F +++ + G+ Sbjct: 199 LVPFGQEAQHWLERYLQQARAAILGGQQTEEVFVTQRGAGMSRVMFWVIVKKCAQIAGIN 258 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + HTLRH+FATHLL++G DLR +Q +LGH +STT IYT+V + + ++ + Sbjct: 259 SPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTTIYTHVARER----LKALHAEH 314 Query: 318 HP 319 HP Sbjct: 315 HP 316 >gi|467161|gb|AAA50925.1| u0247d [Mycobacterium leprae] Length = 316 Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 87/316 (27%), Positives = 146/316 (46%), Gaps = 28/316 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +L L IER ++ TL SY D LI + + ++ I+ + ++ ++ F+ Sbjct: 11 QGYLDYLIIERSIAANTLSSYRRD----LIRYSKHLSDR-GIEDLAKVGEHDVSEFLVAL 65 Query: 79 RTQKIGD----------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 R GD S R+L ++ ++ + +R LP++ Sbjct: 66 RR---GDPDSGVAALSAVSAARALIAVRGLHRFAVAEGLVDLDVARAVRPPTPGRRLPKS 122 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 L + L L+++V + + + RN A+L LLY G RISEA+ L ++ T+ Sbjct: 123 LTVDEVLALLESVGGESGADGPLV-LRNRALLELLYSTGSRISEAVGLDVDDVDTQARTV 181 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 +QGKG K R+VP+ +A+ Y DL + +F RG L+ Sbjct: 182 LLQGKGGKQRLVPVGRPAVQALDAYLVRGRSDLARRGPGMLATPAIFLNARGGRLSRQSA 241 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + ++ + G+ + H LRHSFATHLL G D+R +Q ++GH ++TTQIYT V Sbjct: 242 WQVLQDAAEHAGITSGVSPHMLRHSFATHLLEGGADIRVVQELMGHASVTTTQIYTLVTV 301 Query: 304 KNGGDWMMEIYDQTHP 319 + + E++ HP Sbjct: 302 QA----LREVWAGAHP 313 >gi|265983027|ref|ZP_06095762.1| tyrosine recombinase xerD [Brucella sp. 83/13] gi|264661619|gb|EEZ31880.1| tyrosine recombinase xerD [Brucella sp. 83/13] Length = 309 Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 91/302 (30%), Positives = 135/302 (44%), Gaps = 38/302 (12%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +N+L+ + ERG ++ TL+SY D LA +T IR + Sbjct: 10 ENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAET------GHIRMTLDTM 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q S R LS ++ F ++L + + KK LP+ ++ + L+ Sbjct: 64 AAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGKLL 123 Query: 139 DNVLLHTSHET---KWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 D L + + I A R A+L LY GLR+SE + L D L ++GKG Sbjct: 124 DRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKG 183 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----------- 243 K R+VPL R+A+ ++ L L LP G NP +F Sbjct: 184 SKDRMVPLSRKAREALQKF-------LTLRDSLP------GSDDNPWLFPAFSESGHLAR 230 Query: 244 QRYIRQLRRYLGLPLS----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 Q + R+L+ + H LRH+FA+HLL NG DLR++Q +LGH +STTQIYT Sbjct: 231 QVFARELKGLAARAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYT 290 Query: 300 NV 301 +V Sbjct: 291 HV 292 >gi|256371915|ref|YP_003109739.1| integrase family protein [Acidimicrobium ferrooxidans DSM 10331] gi|256008499|gb|ACU54066.1| integrase family protein [Acidimicrobium ferrooxidans DSM 10331] Length = 299 Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 66/234 (28%), Positives = 115/234 (49%), Gaps = 11/234 (4%) Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 R ++R+ S ++ +Y ++ + + + + +LPRAL + L+++V Sbjct: 70 RGVQRAASALRGLFRYAQRVGARADDPMEGIHAPGTAVALPRALARDEVERLIESV---- 125 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 AR+ AIL +LYG G+R+SE T I + + + GK + R+VP+ Sbjct: 126 -GTADVAGARDRAILEVLYGSGVRVSELCGFTLDTIAQGR-WVPVVGKRGRERLVPISAP 183 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 R A+ ++ L ++ LF +RG P+ ++Q +GL + H L Sbjct: 184 ARDALEQWVVRWRPQLAPKHRM-LFVNLRGAPITRQGVWLVLKQRASRVGLGDRVSPHVL 242 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 RHS A H++ G DLR +Q ILGH L+TT++YT V+ + + +Y + HP Sbjct: 243 RHSLAVHMVEAGADLRVVQEILGHASLATTELYTKVSEGH----VDAVYQRAHP 292 >gi|260655773|ref|ZP_05861242.1| tyrosine recombinase XerD [Jonquetella anthropi E3_33 E1] gi|260629389|gb|EEX47583.1| tyrosine recombinase XerD [Jonquetella anthropi E3_33 E1] Length = 308 Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 77/252 (30%), Positives = 130/252 (51%), Gaps = 20/252 (7%) Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEK 132 FI+ R Q + +++++++ ++S+++Y ++ + ++ L + L K LP+ L++ Sbjct: 59 FIAAMREQDLASSTVQQTMAALRSWVRY-RQSTGSAAASALRLPALPDKPRRLPQVLSDG 117 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + +D +L S E+ W+D R+ IL +L CGLR SE SLT ++ D L ++G Sbjct: 118 E----IDRLLESCSGES-WMDVRDRTILQILADCGLRASEICSLTLASVDMDTRFLHVRG 172 Query: 193 KGDKIRIVPLLPSVRKAILEY----YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 KG+K R VP SV + ++ D P + LF G L R IR Sbjct: 173 KGNKDRSVPFGASVADWLTKWLAVRADGHPTGGARSF---LFASRTGDRLTRIDLWRLIR 229 Query: 249 QLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 + G+ + H LRHS AT LL G DLR++Q LGH + TT+ YT+ + + Sbjct: 230 RRGERAGVAKARLHPHVLRHSVATRLLRRGMDLRTLQEFLGHSSIGTTEKYTHFDLE--- 286 Query: 308 DWMMEIYDQTHP 319 + ++YD+ HP Sbjct: 287 --LRDVYDRCHP 296 >gi|296454352|ref|YP_003661495.1| phage integrase family protein [Bifidobacterium longum subsp. longum JDM301] gi|296183783|gb|ADH00665.1| phage integrase family protein [Bifidobacterium longum subsp. longum JDM301] Length = 353 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 82/335 (24%), Positives = 144/335 (42%), Gaps = 60/335 (17%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +++ L+ RGLS TL++Y D L E + + +++ ++R++++ Sbjct: 12 SFVSYLKSNRGLSANTLKAYRADLTACLHLF-----ELRGVTDLNEITLDDLRSWMAVE- 65 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 ++ S+ R ++ F + + +TT + ++LP L E QA L+D Sbjct: 66 SRDHARSSMARKTVAVRGFFAWAYEHGVTTTDPAATLMTPSIPSTLPAVLTESQAEQLLD 125 Query: 140 NVLLHTSHETKWID--------------------------------------------AR 155 V H ++ D R Sbjct: 126 -VAEHAVATNQYKDDGGAAAASGSGSGKAADKSADIVNRSEAPARADKRDNARATAESQR 184 Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215 N+AIL LLY G+R++E +S+ +I T+++ GKG+K R+VP ++A+ + + Sbjct: 185 NAAILELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGNKQRVVPFGLPAQRALETWLE 244 Query: 216 --------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 + LF G RG ++ + + + + R G+P + H LRH Sbjct: 245 QGRPVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVP-DISPHALRH 303 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 S ATH+L G DLR +Q +LGH L TTQ YT+V+ Sbjct: 304 SAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVS 338 >gi|124516260|gb|EAY57768.1| putative phage integrase family protein [Leptospirillum rubarum] gi|206603101|gb|EDZ39581.1| Putative phage integrase family protein [Leptospirillum sp. Group II '5-way CG'] Length = 321 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 85/292 (29%), Positives = 142/292 (48%), Gaps = 28/292 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L+ L + G S TL +Y D F FL ++ + +I + T +++ Sbjct: 27 RDFLEEL-AQSGHSPRTLMAYRRDLDAFRRFLLLRGKDSPSDPSIDR---TLALSYLFDL 82 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q+ RS+ R LS ++SF ++L ++ + ++ ++ ++P L+E++ TL Sbjct: 83 EQQEYRPRSVLRILSSLRSFYQWLCRKGRCPSNPFEDLSGPRRPKTVPTVLSEREMATL- 141 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L + W D R++ +L L Y G+R+SE L ++ ++++GKG+K R Sbjct: 142 ----LESRPGNSWEDRRDTVMLELFYLTGIRLSELAGLVRGDLSPGMDRIQVRGKGNKER 197 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL---- 254 +VPLL R+ + ++ PLF ++PG + Q+ R + Sbjct: 198 MVPLLGLTRELLRDF-----LSEEGGPGAPLF------AVSPGGEALSVHQIGRIVRRRV 246 Query: 255 ---GL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 GL T HT RHS ATHLL G DLR IQ +LGH L TTQ YT+V Sbjct: 247 RLSGLGDRGVTPHTFRHSCATHLLDRGMDLRKIQELLGHQSLGTTQKYTHVG 298 >gi|256841123|ref|ZP_05546630.1| tyrosine recombinase XerC [Parabacteroides sp. D13] gi|256736966|gb|EEU50293.1| tyrosine recombinase XerC [Parabacteroides sp. D13] Length = 302 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 69/282 (24%), Positives = 138/282 (48%), Gaps = 8/282 (2%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++L L ER S T+ +Y D QF ++ E + + ++ +R++I Sbjct: 4 DDFLNYLRYERNYSNYTIGAYSKDLDQFQRYV---REHREGVFDPGEIDSDFVRSWIVCL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 +K S+ R LS +KSF K+L KR I + + + + K LP + + + L+ Sbjct: 61 MDEKFSPVSVNRKLSSLKSFFKFLMKRGIVSANPLRLVSGPKTKKPLPCFIKDSELEALL 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + + RN ++ +LY G+R SE + + ++ + +++ GK +K R Sbjct: 121 DG----DGFDEDFEGVRNRLVIEMLYDTGMRRSELIGIRNVDVDYEAMQVKVTGKRNKQR 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 ++P ++ +L Y ++ ++ + R G L+ G+ +++ + + Sbjct: 177 LIPFAEGLKNLMLAYTEVRDREVEAAGEWFFVRK-NGNQLSTGIVYNIVKKQLSEIPMLA 235 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + H LRHSFAT +L+NG +L +++ +LGH L++T +YT+ Sbjct: 236 KRSPHVLRHSFATSMLNNGAELNAVKDLLGHSSLASTSVYTH 277 >gi|261217851|ref|ZP_05932132.1| tyrosine recombinase xerD [Brucella ceti M13/05/1] gi|261321299|ref|ZP_05960496.1| tyrosine recombinase xerD [Brucella ceti M644/93/1] gi|260922940|gb|EEX89508.1| tyrosine recombinase xerD [Brucella ceti M13/05/1] gi|261293989|gb|EEX97485.1| tyrosine recombinase xerD [Brucella ceti M644/93/1] Length = 309 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 91/302 (30%), Positives = 134/302 (44%), Gaps = 38/302 (12%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +N+L+ + ERG ++ TL+SY D LA +T IR + Sbjct: 10 ENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAET------GHIRMTLDTM 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q S R LS ++ F ++L + + KK LP+ ++ + L+ Sbjct: 64 AAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGFLDAPKKQKPLPKIMSVENVGKLL 123 Query: 139 DNVLLHTSHET---KWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 D L + + I A R A+L LY GLR+SE + L D L ++GKG Sbjct: 124 DRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKG 183 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----------- 243 K R+VPL R A+ ++ L L LP G NP +F Sbjct: 184 SKDRMVPLSRKARDALQKF-------LTLRDSLP------GSDDNPWLFPAFSESGHLAR 230 Query: 244 QRYIRQLRRYLGLPLS----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 Q + R+L+ + H LRH+FA+HLL NG DLR++Q +LGH +STTQIYT Sbjct: 231 QVFARELKGLAARAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYT 290 Query: 300 NV 301 +V Sbjct: 291 HV 292 >gi|254713562|ref|ZP_05175373.1| site-specific tyrosine recombinase XerD [Brucella ceti M644/93/1] gi|254716083|ref|ZP_05177894.1| site-specific tyrosine recombinase XerD [Brucella ceti M13/05/1] Length = 307 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 91/302 (30%), Positives = 134/302 (44%), Gaps = 38/302 (12%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +N+L+ + ERG ++ TL+SY D LA +T IR + Sbjct: 8 ENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAET------GHIRMTLDTM 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q S R LS ++ F ++L + + KK LP+ ++ + L+ Sbjct: 62 AAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGFLDAPKKQKPLPKIMSVENVGKLL 121 Query: 139 DNVLLHTSHET---KWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 D L + + I A R A+L LY GLR+SE + L D L ++GKG Sbjct: 122 DRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKG 181 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----------- 243 K R+VPL R A+ ++ L L LP G NP +F Sbjct: 182 SKDRMVPLSRKARDALQKF-------LTLRDSLP------GSDDNPWLFPAFSESGHLAR 228 Query: 244 QRYIRQLRRYLGLPLS----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 Q + R+L+ + H LRH+FA+HLL NG DLR++Q +LGH +STTQIYT Sbjct: 229 QVFARELKGLAARAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYT 288 Query: 300 NV 301 +V Sbjct: 289 HV 290 >gi|150017415|ref|YP_001309669.1| site-specific tyrosine recombinase XerC [Clostridium beijerinckii NCIMB 8052] gi|149903880|gb|ABR34713.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] Length = 329 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 106/340 (31%), Positives = 160/340 (47%), Gaps = 56/340 (16%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE----- 55 ++ NNLPE + ++L LE + S T+ Y D F F+ Y Sbjct: 8 LKNNNLPESLV--------DFLNYLETIKSTSINTIDGYRIDLTIFFRFMMIYKGKVNSD 59 Query: 56 ----EKITIQTI-----RQLSYTEIRAFISKRRTQKIGDRSL---KRSLSGIKSFLKYL- 102 E I I I R + ++ AF+S T+K D S R ++ +KSF K+L Sbjct: 60 SVEFEDIDISVIDDEFLRGIKLRDLYAFLS--FTEKYRDNSSYARARKVATLKSFFKFLF 117 Query: 103 KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162 K K+ TE+ L + + K + P L Q++ L++++ ++ + +R+ IL Sbjct: 118 GKAKVITENPALELESPKINKRHPVYLTLNQSIHLLESL---NKNDKNY--SRDYCILMF 172 Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222 CG+R+SE S+ I DD TL I GKG+K R V L + KA+ Y Sbjct: 173 FLNCGMRLSELCSIQIDKIRDD--TLTIIGKGNKERTVYLNDACLKALANY--------- 221 Query: 223 LNIQ-----LP-----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFAT 271 LN++ LP LF R P+N + I++ GL T H LRH+ AT Sbjct: 222 LNVRDDSKALPDNKKFLFLSSRNGPINKRTVEIMIKKHITNAGLTDDKYTPHKLRHTAAT 281 Query: 272 HLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 + G D+RS+QSILGH +STTQIYT+V+ + D + Sbjct: 282 LMYKYGNVDIRSLQSILGHTNISTTQIYTHVDDDSLRDAV 321 >gi|302345052|ref|YP_003813405.1| putative tyrosine recombinase XerC [Prevotella melaninogenica ATCC 25845] gi|302149339|gb|ADK95601.1| putative tyrosine recombinase XerC [Prevotella melaninogenica ATCC 25845] Length = 294 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 75/306 (24%), Positives = 150/306 (49%), Gaps = 23/306 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L ++ ER S +T+ +Y D +F E+ + QLS+ I + I + Sbjct: 5 EKFLDYIKFERNYSPMTVINYRKDLTEF---------ERFYKELEPQLSWESIDSDIVRN 55 Query: 79 RTQKIGDR-----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 + + DR S+ R LS ++SF ++ +RK+ + + ++ K+ +LP+ L E + Sbjct: 56 WMEYMMDRGNSASSVNRRLSALRSFYRFALRRKLIEKDPVHGLQGPKRQKTLPQFLKESE 115 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L+D+ + S++ D I+ Y G+R+SE + L ++I + +++ GK Sbjct: 116 MERLLDSKMWTDSYK----DVLERTIIITFYVTGIRLSELIGLDDKDIDNVTCEIKVTGK 171 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 +K RIVP + +Y ++ + + + F+ +GK + + +++ Sbjct: 172 RNKQRIVPFGKELADVFAQYQEVRNATVKGDSK-AFFQTEKGKRMTTAQVRTLVKKNLSK 230 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 + + H LRH+FAT +L++ L S++ +LGH LSTT+IYT+ + + ++ Sbjct: 231 VSTLKKRSPHVLRHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHTTFEQ----LKKV 286 Query: 314 YDQTHP 319 Y HP Sbjct: 287 YKNAHP 292 >gi|327399621|ref|YP_004340490.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411] gi|327182250|gb|AEA34431.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411] Length = 276 Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 87/292 (29%), Positives = 142/292 (48%), Gaps = 43/292 (14%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 SK T+++Y DT++FL + + ++ F+ K + + ++ R Sbjct: 18 SKNTIKAYLTDTQEFL-------------KNTKGFDRDDVEVFLVKLFDRGLSSSTITRK 64 Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 L+ + F ++LK + + + + K+ LP+ L + L++ + Sbjct: 65 LASLSIFFEFLKLKGKVRINPLRVIDKPKQKKMLPKFLEVDDVVALLEGI---------- 114 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI- 210 D R+ A+ L+Y LR SEAL L +I + +RI+ KG K+ VP+ S R A+ Sbjct: 115 KDKRDRALFELIYSSSLRASEALGLDINDIDFENLRIRIRRKGGKVVYVPI--SQRAALF 172 Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL---STTAHTLRH 267 L+ Y L + PLF GK L+ RY+R+L + L + HTLRH Sbjct: 173 LKDY------LKDRKEGPLFLNRYGKRLS----DRYLRRLIKKYALSSIFKDVSPHTLRH 222 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 S ATHLL++G D+R +Q +LGH + TQIYT++N K + + YD THP Sbjct: 223 SKATHLLNSGMDIRLLQRLLGHSSIKATQIYTHLNLKE----LAQTYDSTHP 270 >gi|28493064|ref|NP_787225.1| integrase/recombinase [Tropheryma whipplei str. Twist] gi|28476104|gb|AAO44194.1| integrase/recombinase [Tropheryma whipplei str. Twist] Length = 349 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 93/332 (28%), Positives = 156/332 (46%), Gaps = 53/332 (15%) Query: 26 EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS--KRRTQKI 83 ++E GLS TLQ+Y I+L++ E+ Q + +++ I F+ +R T+K Sbjct: 30 KLELGLSDATLQTYR---NSLGIYLSWLGEQGT--QRLSEVNSNAIERFLEYRQRHTRK- 83 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 +L +++ +++F ++L T + ++ K +LP L+ + + L+ Sbjct: 84 --STLANTVAALRTFHRHLVLEGRQTLNPTEKLQQPKVPKTLPHPLSLDEIINLLKAA-- 139 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGKGDKIRIVPL 202 +++ + I R+ A++ +LYG G RISEA+SL + DQ+ LR+ GKG+K R+V Sbjct: 140 -DTNQAREISLRDRALIEVLYGTGARISEAVSLNVNAFAESDQNLLRLTGKGNKQRMVLF 198 Query: 203 LPSVRKAILEYYD------LCPFDLNLNIQ----------------------------LP 228 R A+ Y L + NI +P Sbjct: 199 GSYARNAVDNYLQHSRPKLLARSHVYRNITDASTLKYRPTSSTIGDAEDGVLTATAAGVP 258 Query: 229 -LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 LF RGK L IR+L + + H+LRHSFATH+L G D+R++Q +L Sbjct: 259 WLFLSNRGKRLTRQQAGNIIRKLGEAAEIGRYISPHSLRHSFATHMLQAGADIRTVQELL 318 Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 GH ++TT +YT V D + E+Y +HP Sbjct: 319 GHSSINTTSVYTKVTI----DSLREVYATSHP 346 >gi|37522020|ref|NP_925397.1| integrase/recombinase [Gloeobacter violaceus PCC 7421] gi|35213019|dbj|BAC90392.1| glr2451 [Gloeobacter violaceus PCC 7421] Length = 289 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 81/287 (28%), Positives = 126/287 (43%), Gaps = 28/287 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++WL +L R L+ TL++Y+ D +F F+ E + QT + K Sbjct: 8 EHWLDHLIAARSLAGNTLKAYQRDLEEFARFV---ESEHLDWQTFGATGTHHFAQILQKT 64 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN-SLPRALNEKQALTL 137 T RS R LS +++F ++ + R L + LPR L+ Q L Sbjct: 65 HT----PRSAARKLSALRTFYRHALVQGWAGGVPPACTRTLPSAERGLPRILSVAQTEKL 120 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 +++ SA+L LLY GL+ E L +++ ++ L +Q + Sbjct: 121 IESA----------ASPLESAVLELLYATGLKAGELCELRVRDVAFAEAYLSVQPAASQP 170 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYL 254 R+VP+ A+ Y P LP LF G + +PLN R +R+ Sbjct: 171 RVVPVGEPALAAVEAYLGSEPV-------LPERWLFVGRQNRPLNRFHIYRIVREAAARS 223 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T TLRHSFA HLL G DL +++ +LGH L+TT IYT + Sbjct: 224 AIDWPVTPDTLRHSFAVHLLEGGADLATVRELLGHASLATTGIYTRL 270 >gi|148559822|ref|YP_001259843.1| site-specific tyrosine recombinase XerD [Brucella ovis ATCC 25840] gi|163844051|ref|YP_001628455.1| site-specific tyrosine recombinase XerD [Brucella suis ATCC 23445] gi|254700665|ref|ZP_05162493.1| site-specific tyrosine recombinase XerD [Brucella suis bv. 5 str. 513] gi|254707447|ref|ZP_05169275.1| site-specific tyrosine recombinase XerD [Brucella pinnipedialis M163/99/10] gi|254709011|ref|ZP_05170822.1| site-specific tyrosine recombinase XerD [Brucella pinnipedialis B2/94] gi|256030536|ref|ZP_05444150.1| site-specific tyrosine recombinase XerD [Brucella pinnipedialis M292/94/1] gi|256059999|ref|ZP_05450181.1| site-specific tyrosine recombinase XerD [Brucella neotomae 5K33] gi|256158528|ref|ZP_05456422.1| site-specific tyrosine recombinase XerD [Brucella ceti M490/95/1] gi|256253942|ref|ZP_05459478.1| site-specific tyrosine recombinase XerD [Brucella ceti B1/94] gi|256370430|ref|YP_003107941.1| tyrosine recombinase [Brucella microti CCM 4915] gi|260169442|ref|ZP_05756253.1| site-specific tyrosine recombinase XerD [Brucella sp. F5/99] gi|148371079|gb|ABQ61058.1| tyrosine recombinase XerD [Brucella ovis ATCC 25840] gi|163674774|gb|ABY38885.1| tyrosine recombinase XerD [Brucella suis ATCC 23445] gi|256000593|gb|ACU48992.1| tyrosine recombinase [Brucella microti CCM 4915] Length = 307 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 91/302 (30%), Positives = 134/302 (44%), Gaps = 38/302 (12%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +N+L+ + ERG ++ TL+SY D LA +T IR + Sbjct: 8 ENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAET------GHIRMTLDTM 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q S R LS ++ F ++L + + KK LP+ ++ + L+ Sbjct: 62 AAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGKLL 121 Query: 139 DNVLLHTSHET---KWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 D L + + I A R A+L LY GLR+SE + L D L ++GKG Sbjct: 122 DRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKG 181 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----------- 243 K R+VPL R A+ ++ L L LP G NP +F Sbjct: 182 SKDRMVPLSRKARDALQKF-------LTLRDSLP------GSDDNPWLFPAFSESGHLAR 228 Query: 244 QRYIRQLRRYLGLPLS----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 Q + R+L+ + H LRH+FA+HLL NG DLR++Q +LGH +STTQIYT Sbjct: 229 QVFARELKGLAARAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYT 288 Query: 300 NV 301 +V Sbjct: 289 HV 290 >gi|225626413|ref|ZP_03784452.1| tyrosine recombinase XerD [Brucella ceti str. Cudo] gi|261221082|ref|ZP_05935363.1| tyrosine recombinase xerD [Brucella ceti B1/94] gi|261314935|ref|ZP_05954132.1| tyrosine recombinase xerD [Brucella pinnipedialis M163/99/10] gi|261316509|ref|ZP_05955706.1| tyrosine recombinase xerD [Brucella pinnipedialis B2/94] gi|261323973|ref|ZP_05963170.1| tyrosine recombinase xerD [Brucella neotomae 5K33] gi|261751173|ref|ZP_05994882.1| tyrosine recombinase xerD [Brucella suis bv. 5 str. 513] gi|261758967|ref|ZP_06002676.1| tyrosine recombinase xerD [Brucella sp. F5/99] gi|265987583|ref|ZP_06100140.1| tyrosine recombinase xerD [Brucella pinnipedialis M292/94/1] gi|265997042|ref|ZP_06109599.1| tyrosine recombinase xerD [Brucella ceti M490/95/1] gi|294851262|ref|ZP_06791935.1| tyrosine recombinase XerD [Brucella sp. NVSL 07-0026] gi|225618070|gb|EEH15113.1| tyrosine recombinase XerD [Brucella ceti str. Cudo] gi|260919666|gb|EEX86319.1| tyrosine recombinase xerD [Brucella ceti B1/94] gi|261295732|gb|EEX99228.1| tyrosine recombinase xerD [Brucella pinnipedialis B2/94] gi|261299953|gb|EEY03450.1| tyrosine recombinase xerD [Brucella neotomae 5K33] gi|261303961|gb|EEY07458.1| tyrosine recombinase xerD [Brucella pinnipedialis M163/99/10] gi|261738951|gb|EEY26947.1| tyrosine recombinase xerD [Brucella sp. F5/99] gi|261740926|gb|EEY28852.1| tyrosine recombinase xerD [Brucella suis bv. 5 str. 513] gi|262551510|gb|EEZ07500.1| tyrosine recombinase xerD [Brucella ceti M490/95/1] gi|264659780|gb|EEZ30041.1| tyrosine recombinase xerD [Brucella pinnipedialis M292/94/1] gi|294819851|gb|EFG36850.1| tyrosine recombinase XerD [Brucella sp. NVSL 07-0026] Length = 309 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 91/302 (30%), Positives = 134/302 (44%), Gaps = 38/302 (12%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +N+L+ + ERG ++ TL+SY D LA +T IR + Sbjct: 10 ENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAET------GHIRMTLDTM 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q S R LS ++ F ++L + + KK LP+ ++ + L+ Sbjct: 64 AAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGKLL 123 Query: 139 DNVLLHTSHET---KWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 D L + + I A R A+L LY GLR+SE + L D L ++GKG Sbjct: 124 DRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKG 183 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----------- 243 K R+VPL R A+ ++ L L LP G NP +F Sbjct: 184 SKDRMVPLSRKARDALQKF-------LTLRDSLP------GSDDNPWLFPAFSESGHLAR 230 Query: 244 QRYIRQLRRYLGLPLS----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 Q + R+L+ + H LRH+FA+HLL NG DLR++Q +LGH +STTQIYT Sbjct: 231 QVFARELKGLAARAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYT 290 Query: 300 NV 301 +V Sbjct: 291 HV 292 >gi|34499125|ref|NP_903340.1| integrase/recombinase [Chromobacterium violaceum ATCC 12472] gi|34104976|gb|AAQ61332.1| integrase/recombinase [Chromobacterium violaceum ATCC 12472] Length = 295 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 93/314 (29%), Positives = 160/314 (50%), Gaps = 46/314 (14%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L +E GLS+ TL +Y D + LA E ++++T L+ E +A ++ + Sbjct: 11 FLDQLWLEDGLSQNTLAAYRRDLSKLAARLA---ERGVSLETA-TLADLE-QALLAGVAS 65 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 +K R+ R S ++ + ++L + + + + + K+ LP++++E L+D Sbjct: 66 EKPATRA--RLTSALRRYYQHLSRNGVRQDDPSARLASPKQGLRLPKSMSEMDVEALLDA 123 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNIMDDQSTLRIQGKGDKIR 198 + T + R+ A+L +LY GLR+SE ++L N++D ++ GKG K R Sbjct: 124 PDVETP-----LGLRDRAMLEVLYASGLRVSELVGMTLNQLNLLD--GVVKTMGKGSKER 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF--QR---YIRQLRRY 253 +VPL + +L Y L PL + G+P + VF QR RQ+ + Sbjct: 177 LVPLGEIAQDWLLRY---------LKEARPLL--LAGQPCD-AVFVTQRKAGMTRQMAWH 224 Query: 254 L--------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 L GL + H LRH+FATHL+++G DLR +Q +LGH +STTQIYT+V + Sbjct: 225 LITQYAGRQGLA-KVSPHVLRHAFATHLVNHGADLRVVQLLLGHADISTTQIYTHVARER 283 Query: 306 GGDWMMEIYDQTHP 319 + +++ + HP Sbjct: 284 ----LKQLHARHHP 293 >gi|255011626|ref|ZP_05283752.1| putative site-specific recombinase [Bacteroides fragilis 3_1_12] gi|313149461|ref|ZP_07811654.1| integrase [Bacteroides fragilis 3_1_12] gi|313138228|gb|EFR55588.1| integrase [Bacteroides fragilis 3_1_12] Length = 293 Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 79/301 (26%), Positives = 145/301 (48%), Gaps = 13/301 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++L L ER S+ T+ +Y D Q L + +E+I ++ IR +I Sbjct: 4 DSFLDYLRYERNYSEKTVLAYGEDISQ----LQEFVQEEIGEFNPLEVKPELIREWIVSL 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S+ R LS ++SF KYL ++ + + + K LP L E + L+ Sbjct: 60 MDRGYTSTSVNRKLSSLRSFYKYLLRQGEVSVDPLRKITGPKNKKPLPSFLKESEMNKLL 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D+ T + R+ I+ + Y G+R+SE + L +++ S L++ GK +K R Sbjct: 120 DD----TDFGEGFKGCRDRLIIEVFYATGMRLSELIGLDDKDVDFSASLLKVTGKRNKQR 175 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 ++P +++A+ EY D+ +++ R + V+ R L + + L Sbjct: 176 LIPFGDELKEAMFEYVDVRNKVISVKSDAFFVRENGERLYKNLVYNLVKRNLSKVVTLK- 234 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + H LRH+FAT +L+N +L +++ +LGH L+TT+IYT+ + + ++Y Q H Sbjct: 235 KRSPHVLRHTFATTMLNNDAELGAVKELLGHSSLATTEIYTHTTFEE----LKKVYKQAH 290 Query: 319 P 319 P Sbjct: 291 P 291 >gi|291522352|emb|CBK80645.1| Site-specific recombinase XerD [Coprococcus catus GD/7] Length = 159 Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 60/162 (37%), Positives = 91/162 (56%), Gaps = 6/162 (3%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC- 217 +L L+Y G+R+SE +SLT +I +R +G + RI+P+ R ++ +Y Sbjct: 1 MLELMYATGIRVSELVSLTIDDINVQAGYIRCSERGRE-RIIPIGSVARISLRQYLKQAR 59 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 P ++ + LF G+P++ F + ++Q G+ T HTLRHSFA HLL NG Sbjct: 60 PAMISDDSSAILFPNYSGQPMSRQGFWKILKQYAAKAGIESDITPHTLRHSFAAHLLENG 119 Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 DLRS+Q +LGH +STTQIY +N+ + +IY THP Sbjct: 120 ADLRSVQEMLGHSDISTTQIYLKMNTGR----IRDIYSHTHP 157 >gi|225853465|ref|YP_002733698.1| site-specific tyrosine recombinase XerD [Brucella melitensis ATCC 23457] gi|256045632|ref|ZP_05448510.1| site-specific tyrosine recombinase XerD [Brucella melitensis bv. 1 str. Rev.1] gi|256112356|ref|ZP_05453277.1| site-specific tyrosine recombinase XerD [Brucella melitensis bv. 3 str. Ether] gi|225641830|gb|ACO01744.1| tyrosine recombinase XerD [Brucella melitensis ATCC 23457] gi|326410027|gb|ADZ67092.1| site-specific tyrosine recombinase XerD [Brucella melitensis M28] gi|326539743|gb|ADZ87958.1| tyrosine recombinase XerD [Brucella melitensis M5-90] Length = 307 Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 91/302 (30%), Positives = 134/302 (44%), Gaps = 38/302 (12%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +N+L+ + ERG ++ TL+SY D LA +T IR + Sbjct: 8 ENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAET------GHIRMTLDTM 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q S R LS ++ F ++L + + KK LP+ ++ + L+ Sbjct: 62 AAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILYAPKKQKPLPKIMSVENVGKLL 121 Query: 139 DNVLLHTSHET---KWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 D L + + I A R A+L LY GLR+SE + L D L ++GKG Sbjct: 122 DRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKG 181 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----------- 243 K R+VPL R A+ ++ L L LP G NP +F Sbjct: 182 SKDRMVPLSRKARDALQKF-------LTLRDSLP------GSDDNPWLFPAFSESGHLAR 228 Query: 244 QRYIRQLRRYLGLPLS----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 Q + R+L+ + H LRH+FA+HLL NG DLR++Q +LGH +STTQIYT Sbjct: 229 QVFARELKGLAARAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYT 288 Query: 300 NV 301 +V Sbjct: 289 HV 290 >gi|50123101|ref|YP_052268.1| site-specific tyrosine recombinase XerC [Pectobacterium atrosepticum SCRI1043] gi|49613627|emb|CAG77078.1| integrase/recombinase [Pectobacterium atrosepticum SCRI1043] Length = 311 Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 84/302 (27%), Positives = 148/302 (49%), Gaps = 25/302 (8%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L+ L++ER LS LTL SY +RQ + + I R L + +R+ +S+ + Sbjct: 24 LRYLKVERQLSPLTLTSY---SRQLSAVITILSAAGIA--DWRALDASSVRSVVSRSKRD 78 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 + SL LS ++SFL ++ R + T + + + LP+ ++ + N Sbjct: 79 GLHSGSLALRLSALRSFLDWMVSRGVLTANPAKGVSTPRAGRPLPKNMDVDEV-----NR 133 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 LL + + R+ +L ++YG GLR++E + + Q+I + + GKG K R +P Sbjct: 134 LLEIDLDDP-LAVRDRTMLEVMYGAGLRLAELVGMDYQHIDLASGEIWVMGKGSKERKLP 192 Query: 202 LLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 + + + + L P D + F +G+ ++ Q+ + G+ Sbjct: 193 IGKTAVTWLERWLALRELFGPQDDAV------FISNQGRRISMRNVQKRFAEWGVKQGIN 246 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 H LRHSFATH+L + GDLR++Q +LGH L+TTQIYT+++ ++ + +YD Sbjct: 247 SHVHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----LASVYDAA 302 Query: 318 HP 319 HP Sbjct: 303 HP 304 >gi|14591576|ref|NP_143658.1| integrase/recombinase [Pyrococcus horikoshii OT3] gi|73920474|sp|O59490|XERCL_PYRHO RecName: Full=Probable tyrosine recombinase xerC-like gi|3258262|dbj|BAA30945.1| 285aa long hypothetical integrase/recombinase [Pyrococcus horikoshii OT3] Length = 285 Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 99/309 (32%), Positives = 155/309 (50%), Gaps = 57/309 (18%) Query: 8 EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67 EIV+ ++L+E +L E+E G SK T+ R + +L+ + EE + L Sbjct: 6 EIVNSDILEEFATYL---ELE-GKSKNTI-------RMYTYYLSKFFEEGYSPTARDALK 54 Query: 68 YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127 F++K R RSL + +KS+ K+ +S ++N K SLP+ Sbjct: 55 ------FLAKLRKSGYSIRSLNLVIQALKSYFKFE-----GLDSEAEKLKNPKIPKSLPK 103 Query: 128 ALNE---KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 +L E K+ +++ DN+ R+ IL LLYG GLR+SE +L +++ + Sbjct: 104 SLTEDEVKKIVSVADNL-------------RDKLILLLLYGAGLRVSELCNLKIEDVNFE 150 Query: 185 QSTLRIQG-KGDKIRIVP----LLPSVRKAILEYYDLCPFDLNLNIQLPLF---RGIRGK 236 +S L ++G KG K R++P LL + + + D P+ LF R R Sbjct: 151 KSFLIVRGGKGGKDRVIPISKTLLFEIERYLKTRKDNSPY---------LFVEKRRNRKD 201 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 L+P +++ + +GL + T H LRHSFATH+L G D+R IQ +LGH LSTTQ Sbjct: 202 KLSPKTVWMLVKKYGKKVGL--NVTPHQLRHSFATHMLERGVDIRIIQELLGHANLSTTQ 259 Query: 297 IYTNVNSKN 305 IYT V +K+ Sbjct: 260 IYTKVTTKH 268 >gi|225012642|ref|ZP_03703077.1| integrase family protein [Flavobacteria bacterium MS024-2A] gi|225003175|gb|EEG41150.1| integrase family protein [Flavobacteria bacterium MS024-2A] Length = 298 Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 81/310 (26%), Positives = 150/310 (48%), Gaps = 18/310 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +++ + +E+ S T ++Y+ + QF FL + + ++ ++SY+EIR++I Sbjct: 5 SFIDYILLEKKSSLHTQKAYQSNLEQFEAFLL----SEGSKASLEEVSYSEIRSWIVSLI 60 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + R++ R +S ++S+ K+L + S + + LK + + ++ + L+D Sbjct: 61 QKGNSTRTVNRKISVLRSYYKFLMRTGSIDSSPLKEHKALKMATQVQLPFSQDEVAQLLD 120 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + S ++ IL L Y G+R SE + L N+ + +++ GK +K R+ Sbjct: 121 SGHFPDS----YLGVLQKTILSLFYYTGIRRSELIELKLLNVDLSKGLIKVLGKRNKERL 176 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPL 258 +PLLP ++ + D C N++ + LF + G L + + Sbjct: 177 IPLLPEIKVELQLMLD-CQVRNNIDREEGLFFTTQQGFKLTDSFVYATVNDYFSKVSTKT 235 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + H LRHSFATHLL G DL SI+ +LGH ++ TQ YT+ + + E+Y H Sbjct: 236 KRSPHVLRHSFATHLLDQGADLNSIKDLLGHSSIAATQHYTHSSMAK----IKEVYKSAH 291 Query: 319 PSITQKDKKN 328 P ++KKN Sbjct: 292 P----REKKN 297 >gi|17986324|ref|NP_538958.1| site-specific tyrosine recombinase XerD [Brucella melitensis bv. 1 str. 16M] gi|260562936|ref|ZP_05833422.1| tyrosine recombinase xerD [Brucella melitensis bv. 1 str. 16M] gi|265992055|ref|ZP_06104612.1| tyrosine recombinase xerD [Brucella melitensis bv. 1 str. Rev.1] gi|265993791|ref|ZP_06106348.1| tyrosine recombinase xerD [Brucella melitensis bv. 3 str. Ether] gi|265999264|ref|ZP_06111622.1| tyrosine recombinase xerD [Brucella melitensis bv. 2 str. 63/9] gi|34222943|sp|Q8YJP2|XERD_BRUME RecName: Full=Tyrosine recombinase xerD gi|17981909|gb|AAL51222.1| integrase/recombinase xerd [Brucella melitensis bv. 1 str. 16M] gi|260152952|gb|EEW88044.1| tyrosine recombinase xerD [Brucella melitensis bv. 1 str. 16M] gi|262764772|gb|EEZ10693.1| tyrosine recombinase xerD [Brucella melitensis bv. 3 str. Ether] gi|263003121|gb|EEZ15414.1| tyrosine recombinase xerD [Brucella melitensis bv. 1 str. Rev.1] gi|263092931|gb|EEZ17106.1| tyrosine recombinase xerD [Brucella melitensis bv. 2 str. 63/9] Length = 309 Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 91/302 (30%), Positives = 134/302 (44%), Gaps = 38/302 (12%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +N+L+ + ERG ++ TL+SY D LA +T IR + Sbjct: 10 ENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAET------GHIRMTLDTM 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q S R LS ++ F ++L + + KK LP+ ++ + L+ Sbjct: 64 AAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILYAPKKQKPLPKIMSVENVGKLL 123 Query: 139 DNVLLHTSHET---KWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 D L + + I A R A+L LY GLR+SE + L D L ++GKG Sbjct: 124 DRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKG 183 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----------- 243 K R+VPL R A+ ++ L L LP G NP +F Sbjct: 184 SKDRMVPLSRKARDALQKF-------LTLRDSLP------GSDDNPWLFPAFSESGHLAR 230 Query: 244 QRYIRQLRRYLGLPLS----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 Q + R+L+ + H LRH+FA+HLL NG DLR++Q +LGH +STTQIYT Sbjct: 231 QVFARELKGLAARAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYT 290 Query: 300 NV 301 +V Sbjct: 291 HV 292 >gi|23502879|ref|NP_699006.1| site-specific tyrosine recombinase XerD [Brucella suis 1330] gi|161619947|ref|YP_001593834.1| site-specific tyrosine recombinase XerD [Brucella canis ATCC 23365] gi|254705035|ref|ZP_05166863.1| site-specific tyrosine recombinase XerD [Brucella suis bv. 3 str. 686] gi|23348908|gb|AAN30921.1| integrase/recombinase XerD [Brucella suis 1330] gi|161336758|gb|ABX63063.1| tyrosine recombinase XerD [Brucella canis ATCC 23365] Length = 307 Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 91/302 (30%), Positives = 134/302 (44%), Gaps = 38/302 (12%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +N+L+ + ERG ++ TL+SY D LA +T IR + Sbjct: 8 ENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAET------GHIRMTLDTM 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q S R LS ++ F ++L + + KK LP+ ++ + L+ Sbjct: 62 AAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGRLL 121 Query: 139 DNVLLHTSHET---KWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 D L + + I A R A+L LY GLR+SE + L D L ++GKG Sbjct: 122 DRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKG 181 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----------- 243 K R+VPL R A+ ++ L L LP G NP +F Sbjct: 182 SKDRMVPLSRKARDALQKF-------LTLRDSLP------GSDDNPWLFPAFSESGHLAR 228 Query: 244 QRYIRQLRRYLGLPLS----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 Q + R+L+ + H LRH+FA+HLL NG DLR++Q +LGH +STTQIYT Sbjct: 229 QVFARELKGLAARAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYT 288 Query: 300 NV 301 +V Sbjct: 289 HV 290 >gi|260567497|ref|ZP_05837967.1| tyrosine recombinase xerD [Brucella suis bv. 4 str. 40] gi|261755736|ref|ZP_05999445.1| tyrosine recombinase xerD [Brucella suis bv. 3 str. 686] gi|34222805|sp|Q7ZAN6|XERD_BRUSU RecName: Full=Tyrosine recombinase xerD gi|260157015|gb|EEW92095.1| tyrosine recombinase xerD [Brucella suis bv. 4 str. 40] gi|261745489|gb|EEY33415.1| tyrosine recombinase xerD [Brucella suis bv. 3 str. 686] Length = 309 Score = 102 bits (254), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 91/302 (30%), Positives = 134/302 (44%), Gaps = 38/302 (12%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +N+L+ + ERG ++ TL+SY D LA +T IR + Sbjct: 10 ENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAET------GHIRMTLDTM 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q S R LS ++ F ++L + + KK LP+ ++ + L+ Sbjct: 64 AAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGRLL 123 Query: 139 DNVLLHTSHET---KWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 D L + + I A R A+L LY GLR+SE + L D L ++GKG Sbjct: 124 DRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKG 183 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----------- 243 K R+VPL R A+ ++ L L LP G NP +F Sbjct: 184 SKDRMVPLSRKARDALQKF-------LTLRDSLP------GSDDNPWLFPAFSESGHLAR 230 Query: 244 QRYIRQLRRYLGLPLS----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 Q + R+L+ + H LRH+FA+HLL NG DLR++Q +LGH +STTQIYT Sbjct: 231 QVFARELKGLAARAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYT 290 Query: 300 NV 301 +V Sbjct: 291 HV 292 >gi|258622840|ref|ZP_05717857.1| tyrosine recombinase XerC [Vibrio mimicus VM573] gi|258584901|gb|EEW09633.1| tyrosine recombinase XerC [Vibrio mimicus VM573] Length = 266 Score = 102 bits (254), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 73/264 (27%), Positives = 135/264 (51%), Gaps = 15/264 (5%) Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 QL +R + + Q + S+ LS ++SFL +L R + + +K Sbjct: 15 QLDAAWVRQLVVLGKRQGMKASSISTRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRP 74 Query: 125 LPRALNEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 LP+ L+ VD + LL + + + R+ AI+ L+YG GLR++E +S+ +++ Sbjct: 75 LPKNLD-------VDEMAQLLEVTDDDP-LSIRDRAIMELMYGSGLRLAELVSIDVKDVN 126 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242 +R+ GKG+K R V ++ + + L N + + LF G ++ Sbjct: 127 LRDGEIRVIGKGNKERKVWFAGQAQEWVGNWLKLRSQLANSD-ETALFVSKLGTRISHRS 185 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 Q+ + + + + + H LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ Sbjct: 186 VQKRMAEWGQKQAVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLD 245 Query: 303 SKNGGDWMMEIYDQTHPSITQKDK 326 ++ + ++YDQ HP +K+K Sbjct: 246 FQH----LAQVYDQAHPRARKKNK 265 >gi|269213994|ref|ZP_05983350.2| tyrosine recombinase XerD [Neisseria cinerea ATCC 14685] gi|269144753|gb|EEZ71171.1| tyrosine recombinase XerD [Neisseria cinerea ATCC 14685] Length = 308 Score = 102 bits (254), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 82/281 (29%), Positives = 142/281 (50%), Gaps = 16/281 (5%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L+ L ++R LS+ TL+SY D + L+ + QT+R +++ A + + Sbjct: 27 LETLWLDRRLSRNTLESYRRDLEKIARRLS------LCGQTLRDADESDLAAAVYVAGEE 80 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 + S R+LS K ++++ + T++ ++ K ++P + E+Q L+ Sbjct: 81 R---SSQARALSACKRLYIWMEREGMRTDNPTRLLKPPKIDKNIPTLITEQQISRLLSAP 137 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 T H R+ A+L L+Y GLR+SEA+ L+ N+ D+ + GKG+K RIVP Sbjct: 138 DTDTPH-----GLRDKALLELMYATGLRVSEAVRLSFGNLDLDRGCITTLGKGNKQRIVP 192 Query: 202 LLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 + + YY + P L LF + ++ + +++ G+ Sbjct: 193 MGRESVYWVERYYKEARPLLLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGIE-HI 251 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + H+LRH+FATHL+ +G DLR +Q +LGH L+TTQIYT+V Sbjct: 252 SPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHV 292 >gi|15827711|ref|NP_301974.1| site-specific tyrosine recombinase XerD [Mycobacterium leprae TN] gi|221230188|ref|YP_002503604.1| site-specific tyrosine recombinase XerD [Mycobacterium leprae Br4923] gi|34222781|sp|Q49890|XERD_MYCLE RecName: Full=Tyrosine recombinase xerD gi|2065218|emb|CAB08282.1| XerD [Mycobacterium leprae] gi|13093262|emb|CAC31746.1| integrase/recombinase [Mycobacterium leprae] gi|219933295|emb|CAR71460.1| integrase/recombinase [Mycobacterium leprae Br4923] Length = 316 Score = 102 bits (254), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 87/316 (27%), Positives = 146/316 (46%), Gaps = 28/316 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +L L IER ++ TL SY D LI + + ++ I+ + ++ ++ F+ Sbjct: 11 QGYLDYLIIERSIAANTLSSYRRD----LIRYSKHLSDR-GIEDLAKVGEHDVSEFLVAL 65 Query: 79 RTQKIGD----------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 R GD S R+L ++ ++ + +R LP++ Sbjct: 66 RR---GDPDSGVAALSAVSAARALIAVRGLHRFAVAEGLVDLDVARAVRPPTPGRRLPKS 122 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 L + L L+++V + + + RN A+L LLY G RISEA+ L ++ T+ Sbjct: 123 LTVDEVLALLESVGGESRADGPLV-LRNRALLELLYSTGSRISEAVGLDVDDVDTQARTV 181 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 +QGKG K R+VP+ +A+ Y DL + +F RG L+ Sbjct: 182 LLQGKGGKQRLVPVGRPAVQALDAYLVRGRSDLARRGPGMLATPAIFLNARGGRLSRQSA 241 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + ++ + G+ + H LRHSFATHLL G D+R +Q ++GH ++TTQIYT V Sbjct: 242 WQVLQDAAEHAGITSGVSPHMLRHSFATHLLEGGADIRVVQELMGHASVTTTQIYTLVTV 301 Query: 304 KNGGDWMMEIYDQTHP 319 + + E++ HP Sbjct: 302 QA----LREVWAGAHP 313 >gi|325299603|ref|YP_004259520.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170] gi|324319156|gb|ADY37047.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170] Length = 292 Score = 102 bits (254), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 85/308 (27%), Positives = 147/308 (47%), Gaps = 26/308 (8%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 ++++L+ L+ E+ S+ T+ SY D F + +E + T+ IR ++ Sbjct: 3 KESFLKYLQFEKNYSEKTVVSYGIDLSGFEAYFK-AVDETLDFATV---DADVIRGWVVS 58 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 + S+ R LS ++SF +YL + K+ + + + KK LP + E L Sbjct: 59 LMDEGYAASSVNRKLSSLRSFYRYLLREKVVSVDPVRKVTGPKKKKPLPVFVKEADMDRL 118 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 +D T + RN AI+ + Y G+R+SE + L N+ T+++ GK +K Sbjct: 119 LD-----AECGTDFESVRNKAIVAVFYETGIRLSELIGLKDANVDFSAGTIKVTGKRNKQ 173 Query: 198 RIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ-LR 251 R++P + IL+ Y + C + F GK + PG+ +RQ L Sbjct: 174 RVIPFGEELEN-ILQVYLSARNEYCHTECE-----AFFVRKEGKAMYPGMVYLLVRQNLS 227 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 R + L + H LRHSFAT +L+N L +++ +LGH L+TT+IYT+ + + Sbjct: 228 RVVALK-KRSPHVLRHSFATAMLNNQAGLEAVKELLGHESLTTTEIYTHTTFEE----LK 282 Query: 312 EIYDQTHP 319 ++Y Q HP Sbjct: 283 KVYQQAHP 290 >gi|170725258|ref|YP_001759284.1| tyrosine recombinase XerD [Shewanella woodyi ATCC 51908] gi|169810605|gb|ACA85189.1| tyrosine recombinase XerD [Shewanella woodyi ATCC 51908] Length = 308 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 93/300 (31%), Positives = 146/300 (48%), Gaps = 16/300 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +L RGLS TL +Y D F +L + I + Q IR ++ R Sbjct: 22 FLDDLWSSRGLSSNTLSAYRTDLCHFEHYL---IKSGIALCDATQ---GTIRDYLDVRFE 75 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + S R +S ++ F +L + +++ + + LP +L+E VD+ Sbjct: 76 KGFARTSSARLISSLRRFYGFLVIQNRIEVDPTAQIKSPQLARKLPDSLSEAD----VDS 131 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 +L + + I+ R+ A+L LLY GLR++E +SLT + I Q +R+ GKG K R+V Sbjct: 132 LLSEPNLDDP-IECRDKAMLELLYATGLRVTELVSLTMEQISLRQGVVRVVGKGGKERLV 190 Query: 201 PLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 PL + Y +L + LF RG + F I+ G+ Sbjct: 191 PLGEMAISEVESYLVAARGELLKQKMSDVLFPSKRGSMMTRQTFWHRIKHYALRAGISTD 250 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V + +++ + HP Sbjct: 251 LSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKAR----LSQLHSEHHP 306 >gi|209693751|ref|YP_002261679.1| site-specific tyrosine recombinase XerC [Aliivibrio salmonicida LFI1238] gi|208007702|emb|CAQ77813.1| tyrosine recombinase XerC [Aliivibrio salmonicida LFI1238] Length = 303 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 83/306 (27%), Positives = 151/306 (49%), Gaps = 34/306 (11%) Query: 28 ERGLSKLTLQSYE---CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 E+GLS T ++Y+ + LI L + + + +RQ++ +R+ + Sbjct: 23 EKGLSIYTQRNYKRQLTTIAEQLIELGVDSWQDVDAGWVRQITSKGMRSGLKASSLST-- 80 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 LS ++SF +L R + + + +KS LP+ ++ + L++ Sbjct: 81 ------RLSSLRSFFDFLVLRNVLQANPAKGVSAPRKSRPLPKNIDVDEMGQLLE----- 129 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 +E + R+ A++ L+YG GLR++E + + ++I Q LR+ GKGDK R VP Sbjct: 130 -VNEDDPLSIRDRAMMELMYGAGLRLAELVGIDVRDIQLRQGELRVIGKGDKERKVPFSG 188 Query: 205 SVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 ++ + + L + QL P +G+ L + R +++ G+ + Sbjct: 189 KAKEWLGHW-------LQVRNQLANPEEKGLFVSKLGVRISHRNVQKRMAEWGMKQGVNS 241 Query: 263 H----TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 H LRHSFATH+L + G+LR++Q +LGH +STTQIYT+++ ++ + + YDQ H Sbjct: 242 HISPHKLRHSFATHMLESSGNLRAVQELLGHENISTTQIYTHLDFQH----LAQAYDQAH 297 Query: 319 PSITQK 324 P +K Sbjct: 298 PRAKKK 303 >gi|172057600|ref|YP_001814060.1| integrase family protein [Exiguobacterium sibiricum 255-15] gi|171990121|gb|ACB61043.1| integrase family protein [Exiguobacterium sibiricum 255-15] Length = 347 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 85/307 (27%), Positives = 152/307 (49%), Gaps = 26/307 (8%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI-----RAFISKRR-TQK 82 + SK T++ Y D F F+A + E I + I Q ++ EI A+ T++ Sbjct: 44 KNFSKATMRRYVYDFDSFFQFVAEASGESIQARDITQEAFLEIDGSGIAAYAEYLALTKQ 103 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV---- 138 + R LS ++S ++L + +E+ + + K++ P L +++ L+ Sbjct: 104 NAPSVINRKLSALQSLFRHLIDIGVLSENPVAKINRPKQAKRDPVYLTKREWDELMQLLP 163 Query: 139 DNVLLHTSHETKW--IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 NV ++ T + R+ + LL G+R+SE LT + + T+R+ GKG+K Sbjct: 164 SNVEMNAREATHYERDRVRDITLFQLLGYSGMRLSEMTQLTWNAVDFHEGTIRVIGKGNK 223 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ----RYIRQLRR 252 R++PL VR A+ ++ + L + P+F+ +GK L+P Q R++ +LR Sbjct: 224 ERVIPLAKPVRVALRKF--AAHYSLTMRGPEPIFQK-QGKALSPRAVQHILKRHVDRLRP 280 Query: 253 YLGLPL----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 L P T H LRH+FAT L + G D+ +IQ +LGH ++TTQ+Y ++ + Sbjct: 281 VL--PFLERKQITPHKLRHTFATRLATGGVDVLTIQQLLGHESVATTQVYAHIGDRE-KK 337 Query: 309 WMMEIYD 315 +E++D Sbjct: 338 RAIELFD 344 >gi|332977413|gb|EGK14190.1| site-specific tyrosine recombinase XerC [Psychrobacter sp. 1501(2011)] Length = 341 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 91/329 (27%), Positives = 149/329 (45%), Gaps = 45/329 (13%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT---- 69 LL + WL L + R +S T+++Y Q FL +LS+T Sbjct: 36 LLLPVEQWLAELSV-RQMSSHTIEAYYAGLFQLASFL-----------EAGKLSWTRCDK 83 Query: 70 -EIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127 ++ +I++R + S+++ LS I+ F +L + + + + LP Sbjct: 84 RQLAKYIAQRLDVDALAISSVQQELSAIRHFYSWLIDQGQARINPTTGYQLKRAPRPLPS 143 Query: 128 ALNEKQALTLVDNVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-- 184 + L++ + T + + WI R+ A+ LLY GLR+ E + L ++ D Sbjct: 144 IADGDLLTQLLEQPMPDTPEQARLWI--RDKAMFELLYSSGLRVGELVGLNVSDLRIDAR 201 Query: 185 --QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF--------DLNLNIQLPLFRGIR 234 + +R+ GKG+K R+VP+ KAI Y P D L I L Sbjct: 202 GERGEVRVTGKGNKTRLVPVGRQALKAINTY---LPHRYLWEEQGDTALFISEKL----- 253 Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 G L Q+ ++ G+ + H LRH FA+H+LS GDLR++Q +LGH +ST Sbjct: 254 GTRLTTRAVQQRLKVAANRAGIAQNMYPHLLRHCFASHMLSGSGDLRAVQEMLGHSDIST 313 Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323 TQIYT+V+ + ++YD+ HP T Sbjct: 314 TQIYTHVDFAK----LTQVYDKAHPRATH 338 >gi|303241172|ref|ZP_07327680.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302591299|gb|EFL61039.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 330 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 92/316 (29%), Positives = 161/316 (50%), Gaps = 33/316 (10%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF---YTEEK----------ITI 60 +LK+ N+LQ + +G S T+Q Y D R F FL ++K + I Sbjct: 12 ILKDFLNYLQTI---KGKSINTVQVYFYDLRVFFRFLKMDRNLVDKKLDFDKIDICDVDI 68 Query: 61 QTIRQLSYTEIRAF---ISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNM 116 + I+ ++ +++ +F +S R R+ R ++ +KSF YL K K+ + + Sbjct: 69 ELIKTVTLSDLYSFMSYVSNNRDNTSYARA--RKVASLKSFFNYLFNKAKLLNVNPASEL 126 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 + K LPR LN +++ L+ +V T E R+ A+L L CG+R+SE + + Sbjct: 127 ESPKILKRLPRYLNVEESKQLLSSVNTGTYSE------RDYAMLTLFLNCGMRLSELVGI 180 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 NI +D TL + GKGDK R +PL + +AI Y + P + + + LF R + Sbjct: 181 NINNIKND--TLTVIGKGDKERSIPLNSACLEAIEAYMKVRPVN-GVKDKNALFISGRKQ 237 Query: 237 PLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLST 294 ++ Q+ +++ + GL P + H LRH+ AT + G D+R++Q +LGH ++T Sbjct: 238 RISKESVQKIVKKYIKQAGLDPQRYSTHKLRHTAATLMYKYGKVDIRALQELLGHESIAT 297 Query: 295 TQIYTNVNSKNGGDWM 310 T+IYT+++ + D + Sbjct: 298 TEIYTHLDKEQLKDAV 313 >gi|320534120|ref|ZP_08034661.1| putative site-specific tyrosine recombinase XerD [Actinomyces sp. oral taxon 171 str. F0337] gi|320133699|gb|EFW26106.1| putative site-specific tyrosine recombinase XerD [Actinomyces sp. oral taxon 171 str. F0337] Length = 222 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 110/221 (49%), Gaps = 17/221 (7%) Query: 108 TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167 T+E +R + LP+AL + L++ + S + R+ A+L +LY G Sbjct: 6 TSEDPSATVRPPQPGRRLPKALGIDEVRLLLEAAGVDDSP----VSLRDRALLEVLYATG 61 Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQ 226 RISEA+ L ++ D LR+ GKG K R+VP+ +A+ Y P Sbjct: 62 ARISEAVGLVIDDLDTDSRLLRLFGKGRKERVVPMGTYAWEALDAYLVRGRPVLAEKGRG 121 Query: 227 LP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-------HTLRHSFATHLLSNGG 278 +P +F G+PL+ ++Q GL +A HTLRHSFATHLL+ G Sbjct: 122 VPQVFLNTLGRPLSRQSAWAVLQQAAERAGLIGVDSADRRRISPHTLRHSFATHLLAGGA 181 Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 D+R +Q +LGH ++TTQIYT V D + E+Y +HP Sbjct: 182 DVRVVQEMLGHASVTTTQIYTKVTV----DHLREVYATSHP 218 >gi|330997394|ref|ZP_08321245.1| putative tyrosine recombinase XerC [Paraprevotella xylaniphila YIT 11841] gi|329570768|gb|EGG52484.1| putative tyrosine recombinase XerC [Paraprevotella xylaniphila YIT 11841] Length = 293 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 82/304 (26%), Positives = 144/304 (47%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ L +ER S T++ Y D F ++Y + T+ + + +R ++ Sbjct: 4 EAFLEYLTLERNYSLRTVEEYRDDLNAFE---SYYKKVDSTL-SWETMDGDVVRDWMVSM 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 ++ R LS +++F +YL +R + N++ KK LP L E + L+ Sbjct: 60 MEAGRTATTVNRRLSALRTFYRYLLRRDWIKVDPVRNIQGPKKKKPLPVFLKESEMNRLL 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D ++ R+ I+ Y G+R+SE SL Q++ +R+ GK +K R Sbjct: 120 DGDFFGND----FLGKRDKLIVNTFYVTGIRLSELTSLNNQDVDMWGGVIRVTGKRNKQR 175 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 IVP + + Y D L L +F +G+ L + +R YLG+ Sbjct: 176 IVPFGDELEALLTAYLDEKS-SLGLEDGGAMFVDEKGERLTNVKVRNLVRH---YLGMVT 231 Query: 259 ST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + H LRH+FAT +L++ DL S++ +LGH +STT+IYT+ + + E+Y+ Sbjct: 232 TQKKRSPHVLRHTFATSMLNHHADLESLKELLGHESISTTEIYTHTTFEE----LKEMYN 287 Query: 316 QTHP 319 Q HP Sbjct: 288 QAHP 291 >gi|331697596|ref|YP_004333835.1| Tyrosine recombinase xerC [Pseudonocardia dioxanivorans CB1190] gi|326952285|gb|AEA25982.1| Tyrosine recombinase xerC [Pseudonocardia dioxanivorans CB1190] Length = 307 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 87/309 (28%), Positives = 141/309 (45%), Gaps = 30/309 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 ++ +L +ERG S TL++Y D R+++ L + + + + ++ F++ R+ Sbjct: 15 FMAHLAVERGSSPNTLRAYGNDLRRYVAHL-----RERGVDDLAAVQEADVSGFVAALRS 69 Query: 81 --QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S R+L+ ++ ++ + + + + + LPR L V Sbjct: 70 GPAPLAASSAARALAAVRGLHRFAARDGLVDDDVSRAVTPPATARRLPRTLT-------V 122 Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 D V LL R+ A+L LLY G RISEA+ + ++ + T+ + GKG K Sbjct: 123 DEVEQLLAGCIGDGPTGLRDRALLELLYSTGARISEAVGIDVDDLDAESRTVLLHGKGGK 182 Query: 197 IRIVPLLPSVRKAILEYYDLC-----PFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQL 250 R+VP V + L D P + P L RG L+ +R Sbjct: 183 QRVVP----VGRPALAAVDAWLVRGRPALASRGRGSPALLLNARGARLSRQSAWHVLRGA 238 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ + HTLRH FATHLLS G D+R +Q +LGH ++TTQIYT+V D + Sbjct: 239 AEVAGVRAEVSPHTLRHCFATHLLSGGADVRVVQELLGHASVATTQIYTHVTV----DTL 294 Query: 311 MEIYDQTHP 319 E+Y HP Sbjct: 295 REVYATAHP 303 >gi|269925988|ref|YP_003322611.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798] gi|269789648|gb|ACZ41789.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798] Length = 316 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 89/316 (28%), Positives = 155/316 (49%), Gaps = 37/316 (11%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q++L +E GLS ++++Y+ + +L + K + + + S + ++ Sbjct: 16 QDFLDYCLVEEGLSPASVRTYQQVLYALVDWLELRLQSKAHVSNLDKQSVKAWQRYLVVE 75 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA---LNEKQAL 135 + ++ D + + +S ++SF+ YL +T+ L ++K LP++ ++ +AL Sbjct: 76 K--QLDDDTYVKYISALRSFVNYLHDEDLTS----LTRDDIK----LPKSHMDVSSIKAL 125 Query: 136 TLVDNV---LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI------MDDQS 186 + VD+V L+ T W R+ A+L LLY G+RI+E SL + D+ Sbjct: 126 S-VDDVRALLMAPDPSTPW-GKRDRALLALLYCTGMRIAELCSLNRDQLPLEHLCEDEIL 183 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP----LNPGV 242 + I GKG K R+V + +V + +L+ Y L + LF +G L P Sbjct: 184 EVSIIGKGRKPRVV-FVDAVAQRLLKEY----LQLRTDENPALFVSFKGPTAEDRLTPRA 238 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 Q I++ + GL T HT+RH+FA H L G D R +Q+ LGH L+TTQ YT V Sbjct: 239 IQMSIKKYAKKAGLKTIPTPHTMRHTFAVHKLQGGADTRIVQAFLGHSSLATTQRYTRVT 298 Query: 303 SKNGGDWMMEIYDQTH 318 + ++ E Y++TH Sbjct: 299 DR----YLRESYERTH 310 >gi|126737600|ref|ZP_01753330.1| tyrosine recombinase XerD [Roseobacter sp. SK209-2-6] gi|126720993|gb|EBA17697.1| tyrosine recombinase XerD [Roseobacter sp. SK209-2-6] Length = 328 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 75/242 (30%), Positives = 118/242 (48%), Gaps = 12/242 (4%) Query: 69 TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 +I A++ + + + R LS +K ++ + +++ + + + LP+ Sbjct: 56 ADIEAYLIACDAEGLSRATRARRLSALKQIYRFAFEEGWRSDNPAIQISGPGRDKKLPKT 115 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 L + L+D + + RN ++ LLY G+R+SE +SL + D L Sbjct: 116 LEVIEVDRLLDAA--RQTGRSPEDRLRNCCLMELLYATGMRVSELVSLPVSSARGDPQML 173 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP------LF--RGIRGKPLNP 240 + GKG K R+VPL P R A+ + + N LF RG G L Sbjct: 174 LVLGKGGKERLVPLSPPARDALAAWLSVRDKADEANRSKGHASSRFLFPSRGKAGH-LTR 232 Query: 241 GVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 F I+ L G+ P T HTLRH+FATHLL+NG DLR+IQ++LGH ++TT+IYT Sbjct: 233 HFFYLLIKDLAVTGGVDPEKVTPHTLRHAFATHLLANGADLRAIQTLLGHADIATTEIYT 292 Query: 300 NV 301 +V Sbjct: 293 HV 294 >gi|304321470|ref|YP_003855113.1| putative integrase/recombinase DNA recombination protein [Parvularcula bermudensis HTCC2503] gi|303300372|gb|ADM09971.1| putative integrase/recombinase DNA recombination protein [Parvularcula bermudensis HTCC2503] Length = 323 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 87/300 (29%), Positives = 138/300 (46%), Gaps = 13/300 (4%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L + +ERG S TL++Y D + +FL F + T LS A+I Sbjct: 15 FLDMMAVERGASPRTLRNYGRDLERVSVFL-FQRGTSLLRATAADLS-----AYIDHLHG 68 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q + LS ++ F + + ++ + K LP+ L+ +A +L+D Sbjct: 69 QGRSAATAALCLSALRQFYLFAYTEGMREDNPAELVDRPKARRPLPKILSIDEAASLLD- 127 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + + K R A+L +LY GLR+SE SL + + + + GKG K R+V Sbjct: 128 LARDEAACMKPGPLRLHALLEVLYATGLRVSELCSLPRGAVRAGEPWMTVLGKGQKERLV 187 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLS 259 PL A+ Y + + L RG G V Q +++L G+ P Sbjct: 188 PLTDGAVMAVSHYVAVQTDAERASAFLFPSRGKTGHITTARVAQ-LLKELSARAGIDPTR 246 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H LRH+FA+HLL G DLR +Q +LGH +STTQIYT++ S + + + + HP Sbjct: 247 VSPHVLRHAFASHLLEGGADLRIVQQLLGHADISTTQIYTHIGSGS----LAKTLEHRHP 302 >gi|254452119|ref|ZP_05065556.1| phage integrase [Octadecabacter antarcticus 238] gi|198266525|gb|EDY90795.1| phage integrase [Octadecabacter antarcticus 238] Length = 317 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/218 (33%), Positives = 114/218 (52%), Gaps = 18/218 (8%) Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 ++++G+K L+ +R + + +LK+ +P L++K+ + +L Sbjct: 91 QTMTGVKFLLRVTLRR----HDLVAEIFHLKEPVKVPLVLSKKE----IKRILAMAPS-- 140 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRK 208 + AR +L L YGCG+R E + L +I DQ +RI Q KG K RIV L + Sbjct: 141 --LKAR--VMLSLAYGCGMRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRIVMLPVDILS 196 Query: 209 AILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + +++ P + ++ P LF G RGK L+ R ++ R G+ T HTL Sbjct: 197 LLRDWWQERPTGQDKDVPAPERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHTL 256 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 RHSFATHLL G D+R IQ++LGH +L+TT Y +V + Sbjct: 257 RHSFATHLLERGVDIRVIQALLGHSKLTTTARYASVAT 294 >gi|256843164|ref|ZP_05548652.1| integrase [Lactobacillus crispatus 125-2-CHN] gi|256614584|gb|EEU19785.1| integrase [Lactobacillus crispatus 125-2-CHN] Length = 270 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 116/233 (49%), Gaps = 6/233 (2%) Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 +I+ ++ +K+ S R +S + SF ++L +RK+ + + LP+ Sbjct: 24 DIQVYLQHLAERKLARSSQLRKMSSLHSFYRFLTRRKLVAIDPTQGITLRRGEKKLPQFF 83 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 + + + D++ K + RN A+ L Y G+R+SE +LT + D T+ Sbjct: 84 YQPELKQVFDSL-----KGNKPLTMRNLAMFELFYATGMRVSEVSNLTLNQLDLDLQTIL 138 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 + GKG+K R V +K+++ Y + P L + + +F +G + + ++ Sbjct: 139 VHGKGNKDRYVAFDDKTKKSLIAYLENARPLLLKNDDEQHVFLNNQGTGITSRGIETVMQ 198 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + G+ H LRHSFAT +L+NG DLRS+Q +LGH LS TQIYT+V Sbjct: 199 KTFNQAGISGKVHPHELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHV 251 >gi|254452582|ref|ZP_05066019.1| phage integrase [Octadecabacter antarcticus 238] gi|254454231|ref|ZP_05067668.1| phage integrase [Octadecabacter antarcticus 238] gi|198266988|gb|EDY91258.1| phage integrase [Octadecabacter antarcticus 238] gi|198268637|gb|EDY92907.1| phage integrase [Octadecabacter antarcticus 238] Length = 320 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/218 (33%), Positives = 114/218 (52%), Gaps = 18/218 (8%) Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 ++++G+K L+ +R + + +LK+ +P L++K+ + +L Sbjct: 91 QTMTGVKFLLRVTLRR----HDLVAEIFHLKEPVKVPLVLSKKE----IKRILAMAPS-- 140 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRK 208 + AR +L L YGCG+R E + L +I DQ +RI Q KG K RIV L + Sbjct: 141 --LKAR--VMLSLAYGCGMRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRIVMLPVDILS 196 Query: 209 AILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + +++ P + ++ P LF G RGK L+ R ++ R G+ T HTL Sbjct: 197 LLRDWWQERPTGQDKDVPAPERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHTL 256 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 RHSFATHLL G D+R IQ++LGH +L+TT Y +V + Sbjct: 257 RHSFATHLLERGVDIRVIQALLGHSKLTTTARYASVAT 294 >gi|254450019|ref|ZP_05063456.1| phage integrase [Octadecabacter antarcticus 238] gi|254450690|ref|ZP_05064127.1| phage integrase [Octadecabacter antarcticus 238] gi|254452057|ref|ZP_05065494.1| phage integrase [Octadecabacter antarcticus 238] gi|254452879|ref|ZP_05066316.1| phage integrase [Octadecabacter antarcticus 238] gi|198264425|gb|EDY88695.1| phage integrase [Octadecabacter antarcticus 238] gi|198265096|gb|EDY89366.1| phage integrase [Octadecabacter antarcticus 238] gi|198266463|gb|EDY90733.1| phage integrase [Octadecabacter antarcticus 238] gi|198267285|gb|EDY91555.1| phage integrase [Octadecabacter antarcticus 238] Length = 317 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/218 (33%), Positives = 114/218 (52%), Gaps = 18/218 (8%) Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 ++++G+K L+ +R + + +LK+ +P L++K+ + +L Sbjct: 91 QTMTGVKFLLRVTLRR----HDLVAEIFHLKEPVKVPLVLSKKE----IKRILAMAPS-- 140 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRK 208 + AR +L L YGCG+R E + L +I DQ +RI Q KG K RIV L + Sbjct: 141 --LKAR--VMLSLAYGCGMRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRIVMLPVDILS 196 Query: 209 AILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + +++ P + ++ P LF G RGK L+ R ++ R G+ T HTL Sbjct: 197 LLRDWWKERPTGQDKDVPAPERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHTL 256 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 RHSFATHLL G D+R IQ++LGH +L+TT Y +V + Sbjct: 257 RHSFATHLLERGVDIRVIQALLGHSKLTTTARYASVAT 294 >gi|312872353|ref|ZP_07732423.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF 2062A-h1] gi|312873924|ref|ZP_07733960.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF 2052A-d] gi|329921329|ref|ZP_08277767.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN 1401G] gi|311090473|gb|EFQ48881.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF 2052A-d] gi|311092176|gb|EFQ50550.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF 2062A-h1] gi|328934621|gb|EGG31125.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN 1401G] Length = 307 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 91/321 (28%), Positives = 153/321 (47%), Gaps = 42/321 (13%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 + LK N+L+N ER S T ++Y D + F+ E I ++ LS +I Sbjct: 6 DFLKLYYNYLKN---ERNYSINTCKAYMDDLSEAR---TFFVENGGFIDWLK-LSSRDIE 58 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALN 130 FI +K + R +S ++SF ++L KR I ++++R K+ LP L Sbjct: 59 IFIQYLAQKKYKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGDHKN--LPEFLY 116 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 + + ++ ++ T + RN A+L L Y G+R+SE +L + + + + + Sbjct: 117 SDEMVKVLKSI-----STTTPLGLRNMALLELFYATGMRVSEIANLKLDQVDFELNLILV 171 Query: 191 QGKGDKIRIVP------------LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238 GKG+K R V L+ + +K +L D LN N + RG+ Sbjct: 172 HGKGNKDRYVAFGEEAKTALNNYLVEARKKLLLHKTDYGYVFLNSNGNMITSRGL----- 226 Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + I+ + G+ S H LRH+FAT +L+NG DLR++Q +LGH +STTQIY Sbjct: 227 -----EYIIKNIFLNAGISASVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIY 281 Query: 299 TNVNSKNGGDWMMEIYDQTHP 319 T+V ++ + +IY + P Sbjct: 282 THVTKQH----LCDIYHKYFP 298 >gi|320535374|ref|ZP_08035488.1| putative tyrosine recombinase XerC [Treponema phagedenis F0421] gi|320147776|gb|EFW39278.1| putative tyrosine recombinase XerC [Treponema phagedenis F0421] Length = 307 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 90/316 (28%), Positives = 147/316 (46%), Gaps = 33/316 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + + SK T+ SY D L+F ++ T+ ++ +L ++IR F++ Sbjct: 8 EKYLDYIAGIKHFSKQTVISYRND---LLLFDSWLTDSELKFT---ELGVSDIRIFVADL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R +K S+ R L+ ++ +Y + + + L ++NLK LPR L +QA Sbjct: 62 REKKFAPASINRMLATVRGLYRYAVRLNLCQTNPALAVKNLKLPKKLPRFLFPEQAKEFY 121 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + L + W +AR++A+ +LY G R+SE L +NI ++ + GKG K R Sbjct: 122 N---LPVNKGLLW-EARDAALFSVLYSTGCRVSEIAGLDMKNIDSKLNSAIVLGKGSKER 177 Query: 199 IVPLLPSVRKAILEYY------------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 V K L+ Y D + LF RG PL+ Q Y Sbjct: 178 KV-FFADFAKEYLQIYLAERNELLKKHAGEIQRDKTGRKRDALFINQRGMPLSVQGIQ-Y 235 Query: 247 IRQLRRYLGLPLS---TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 I + RY + + H RHSFA+ L+S G D+R +Q +LGH +STTQ YT+V Sbjct: 236 I--IDRYAAVSPDLKKISPHVFRHSFASTLISRGADIRVVQEMLGHENISTTQKYTHVTP 293 Query: 304 KNGGDWMMEIYDQTHP 319 + + +Y + HP Sbjct: 294 ----ELLQMLYHRAHP 305 >gi|256850237|ref|ZP_05555666.1| integrase-recombinase [Lactobacillus crispatus MV-1A-US] gi|262046371|ref|ZP_06019333.1| integrase [Lactobacillus crispatus MV-3A-US] gi|256712874|gb|EEU27866.1| integrase-recombinase [Lactobacillus crispatus MV-1A-US] gi|260573242|gb|EEX29800.1| integrase [Lactobacillus crispatus MV-3A-US] Length = 270 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 116/233 (49%), Gaps = 6/233 (2%) Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 +I+ ++ +K+ S R +S + SF ++L +RK+ + + LP+ Sbjct: 24 DIQVYLQHLAERKLARSSQLRKMSSLHSFYRFLTRRKLVAIDPTKGITLRRGEKKLPQFF 83 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 + + + D++ K + RN A+ L Y G+R+SE +LT + D T+ Sbjct: 84 YQPELKQVFDSL-----KGNKPLTMRNLAMFELFYATGMRVSEVSNLTLNQLDLDLQTIL 138 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 + GKG+K R V +K+++ Y + P L + + +F +G + + ++ Sbjct: 139 VHGKGNKDRYVAFDDKTKKSLIAYLENARPLLLKNDDEQHVFLNNQGTGITSRGIETVMQ 198 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + G+ H LRHSFAT +L+NG DLRS+Q +LGH LS TQIYT+V Sbjct: 199 KTFNQAGISGKVHPHELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHV 251 >gi|161507474|ref|YP_001577428.1| integrase-recombinase [Lactobacillus helveticus DPC 4571] gi|160348463|gb|ABX27137.1| Integrase-recombinase [Lactobacillus helveticus DPC 4571] Length = 242 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 114/230 (49%), Gaps = 17/230 (7%) Query: 81 QKIGDRSLKRS-----LSGIKSFLKYLKKRK---ITTESNILNMRNLKKSNSLPRALNEK 132 Q + DR L RS +S + SF ++L +RK I I R KK LP Sbjct: 2 QNLADRKLVRSSQARQMSSLHSFFRFLTRRKFIKIDPTQGITLRRGEKK---LPEFFFGN 58 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + + D++ K + RN A+ L Y G+R+SE +LT + I + T+ + G Sbjct: 59 ELKQVFDSL-----KGNKPLTMRNLALFELFYATGMRVSEVSNLTLRQIDLNLQTILVHG 113 Query: 193 KGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 KG+K R V +K+++ Y D P L + +F G PL+ + +++ Sbjct: 114 KGNKDRYVAFDDHTKKSLVRYLEDARPNLLKDETEQHVFLSNLGNPLSKRGIEYVMQKTF 173 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G+ H LRH+FAT +L+NG DLRS+Q +LGH LS TQIYT+V Sbjct: 174 NQAGISGKVHPHELRHTFATAMLNNGADLRSVQELLGHSSLSATQIYTHV 223 >gi|254449766|ref|ZP_05063203.1| phage integrase [Octadecabacter antarcticus 238] gi|254450115|ref|ZP_05063552.1| phage integrase [Octadecabacter antarcticus 238] gi|254450532|ref|ZP_05063969.1| phage integrase [Octadecabacter antarcticus 238] gi|198264172|gb|EDY88442.1| phage integrase [Octadecabacter antarcticus 238] gi|198264521|gb|EDY88791.1| phage integrase [Octadecabacter antarcticus 238] gi|198264938|gb|EDY89208.1| phage integrase [Octadecabacter antarcticus 238] Length = 320 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/218 (33%), Positives = 114/218 (52%), Gaps = 18/218 (8%) Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 ++++G+K L+ +R + + +LK+ +P L++K+ + +L Sbjct: 91 QTMTGVKFLLRVTLRR----HDLVAEIFHLKEPVKVPLVLSKKE----IKRILAMAPS-- 140 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRK 208 + AR +L L YGCG+R E + L +I DQ +RI Q KG K RIV L + Sbjct: 141 --LKAR--VMLSLAYGCGMRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRIVMLPVDILS 196 Query: 209 AILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + +++ P + ++ P LF G RGK L+ R ++ R G+ T HTL Sbjct: 197 LLRDWWKERPTGQDKDVPAPERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHTL 256 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 RHSFATHLL G D+R IQ++LGH +L+TT Y +V + Sbjct: 257 RHSFATHLLERGVDIRVIQALLGHSKLTTTARYASVAT 294 >gi|256825348|ref|YP_003149308.1| site-specific tyrosine recombinase XerD [Kytococcus sedentarius DSM 20547] gi|256688741|gb|ACV06543.1| tyrosine recombinase XerD subunit [Kytococcus sedentarius DSM 20547] Length = 316 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 83/310 (26%), Positives = 138/310 (44%), Gaps = 22/310 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + WL +L +ERGLS T +Y D ++ L + + + ++R ++ Sbjct: 10 EEWLAHLGVERGLSANTTSAYRRDLVAWVAHL-----DAAGRTSWPSVQAADVRQHLADL 64 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 ++ R + ++ F + ++ LP+AL+ + L+ Sbjct: 65 TASGRARSTVTRMVVAVRRFHAFALAEGWVEVDVAADVAPPAAVQPLPKALSLDEVARLI 124 Query: 139 DNVLLHTSHETKWIDA-------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 ++ T DA R+ A+L LLYG G R+SE SL ++ D +R+ Sbjct: 125 ES----TGPVEGGADAVELAVARRDRAVLELLYGTGARVSEVTSLDVDDVDLDGLVVRLV 180 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQ 249 GKG K R VPL + A+ ++ L + L RG+ L + Sbjct: 181 GKGSKERHVPLGGAAAAAVGDWLATGRPVLAARGSGGAALLLNQRGRRLGRQSAWALVTA 240 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 R GL + HTLRHS+ATHL++ G D+R +Q +LGH ++TTQIYT V D Sbjct: 241 AGRRAGLGEHLSPHTLRHSYATHLMAGGADVRVVQELLGHASVTTTQIYTRVTP----DH 296 Query: 310 MMEIYDQTHP 319 + E++ ++HP Sbjct: 297 LREVFQESHP 306 >gi|225175744|ref|ZP_03729737.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] gi|225168668|gb|EEG77469.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] Length = 300 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 85/294 (28%), Positives = 145/294 (49%), Gaps = 21/294 (7%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQF--LIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 +Q + LEIERGLS T++ Y D F L+ F+ + I + QL +R F+ Sbjct: 9 QQEFTDYLEIERGLSDGTVEGYRRDLNIFTQLMVREFFPQGMI----LDQLETKHVRRFL 64 Query: 76 ---SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 K R+ G R+ R L+ ++S+ +L+ + + + ++N+K + LP L + Sbjct: 65 VYLKKERSNDAGTRN--RKLASLRSYFSFLEIQGYVESNPVQQLKNVKTAKLLPVFLTKD 122 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 ++ L++ +H R+ A++ +L G R+ E +SL ++ + +RI G Sbjct: 123 ESDRLINAARMHNKPPY-----RDYAMMRVLLQTGCRLDEMVSLNLDSLNLEDRYMRIIG 177 Query: 193 KGDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 KG+K R++PL A+ EY P D N + +F RG+ ++ Q Q Sbjct: 178 KGNKERMIPLTDKTCAALAEYLAGRLPEDKN---EQAVFLNQRGRRISHRGVQLIFNQTC 234 Query: 252 RYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + GL T H LRH+ T LL+ G DL +I+ I GH +S+T+IY +V + Sbjct: 235 KEAGLNKERLTVHKLRHTCFTMLLNAGVDLPTIKDIAGHENISSTEIYVHVTQR 288 >gi|77164210|ref|YP_342735.1| Phage integrase [Nitrosococcus oceani ATCC 19707] gi|76882524|gb|ABA57205.1| Phage integrase [Nitrosococcus oceani ATCC 19707] Length = 310 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 84/306 (27%), Positives = 141/306 (46%), Gaps = 25/306 (8%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 + + R+++L +L +G S+ T +Y D L + EE + RQ ++ + Sbjct: 7 DFWQARKDFLAHLHYAKGYSQGTCYAYHSD----LGIWGRWLEE--ASKDWRQATHLDTE 60 Query: 73 AFIS-KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP----- 126 F++ + R + + R S + SF K+ K + I K+ +P Sbjct: 61 QFVAWQMRKRGTKAHIVARRSSCLGSFYKWAMKNALVESDPIYLADKPKRPYRIPVWLEK 120 Query: 127 ---RALNE--KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 RA E ++ L +N+ T K + R + L+ GLRISEAL++ +++ Sbjct: 121 EEQRAFQEAVQRVEDLPENIFGRTQEHIKAVRRRYDVLFGLILNSGLRISEALAVKVRDV 180 Query: 182 M---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238 ++RI GKG++ R+VPL P +L + + KP Sbjct: 181 RMVNGVAKSVRIIGKGNRERLVPL-PEAFGQVLGAW----LQGRGGEDFVFAKAPGEKPP 235 Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 P + Y+R+L G+ T H LRH++AT LL +G +L IQ++LGH LSTTQIY Sbjct: 236 GPHAVRAYLRRLIERAGIDKPVTPHKLRHTYATRLLESGAELVDIQALLGHVDLSTTQIY 295 Query: 299 TNVNSK 304 T+V+ + Sbjct: 296 THVSEE 301 >gi|319404882|emb|CBI78483.1| integrase/recombinase XerD [Bartonella rochalimae ATCC BAA-1498] Length = 307 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 82/290 (28%), Positives = 143/290 (49%), Gaps = 18/290 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY--TEIRAFISKR 78 +L+ + ERG S TL +Y+ D + + + K++ +I S ++ +S Sbjct: 10 FLEMMSAERGASVCTLLAYQHDLQ--------WAQNKLSSHSISFFSAQREDLINLLSLM 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S R LS ++ F ++L + + ++ + ++ LP+ ++E L+ Sbjct: 62 QKAGCAATSQARRLSTLRQFFQFLYAEGLREDDPSSDIDSPRQGRPLPKIISEDAMAKLL 121 Query: 139 DNVLLHTSH-----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 D L T + + R +L +LY GLRISE +SL Q + + + ++GK Sbjct: 122 DFAQLETEQAESGTQNYYRALRFQVLLEMLYATGLRISELVSLPVQAVRGKEQFILVRGK 181 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 G+K R+V L R+ +L++ + + +I L R G V R ++ L + Sbjct: 182 GEKERVVLLSEKARQILLQWLSVRDQRKDATSIYLFPARSSTGYIARQFV-ARGLKDLAK 240 Query: 253 YLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G+ + H LRH+FA+HLL NG DLR++Q +LGH +STTQIYT+V Sbjct: 241 RAGIQSENFSPHVLRHAFASHLLQNGADLRAVQHLLGHRDISTTQIYTHV 290 >gi|319654625|ref|ZP_08008706.1| hypothetical protein HMPREF1013_05328 [Bacillus sp. 2_A_57_CT2] gi|317393691|gb|EFV74448.1| hypothetical protein HMPREF1013_05328 [Bacillus sp. 2_A_57_CT2] Length = 328 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 86/279 (30%), Positives = 132/279 (47%), Gaps = 32/279 (11%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 GLSK+TL SY L T K + + ++ EIR F+ K+ S+ Sbjct: 66 GLSKVTLDSY---------LLELNTFSKKVKKRVEDITTAEIRVFLGSFEHLKLS--SVS 114 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 R LS +KSF +L + ++ KK LP+AL ++ + LL S +T Sbjct: 115 RKLSVLKSFFGWLTAEEFLQRDPTTKIKPPKKEKRLPKAL------SIEELELLRESCKT 168 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS---- 205 R A L +LY G R+SE +L I + ++ R+ GKG+K R V P Sbjct: 169 N----RQRAFLEILYATGCRLSEVHALNKSGINNRTASCRVIGKGNKEREVYFSPKAMYH 224 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 +RK ++ D C L + + P R L+ QR I + + GL + HT+ Sbjct: 225 LRKYLMNRTDDCE-ALMVTERKPYRR------LSQRGIQREISIIAKQAGLDKKISPHTM 277 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 RH+FAT L+NG D+ ++Q++LGH +TTQIY + + Sbjct: 278 RHTFATLTLNNGADIAAVQALLGHEDPATTQIYAQLTEE 316 >gi|212710173|ref|ZP_03318301.1| hypothetical protein PROVALCAL_01227 [Providencia alcalifaciens DSM 30120] gi|212687172|gb|EEB46700.1| hypothetical protein PROVALCAL_01227 [Providencia alcalifaciens DSM 30120] Length = 309 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 89/312 (28%), Positives = 152/312 (48%), Gaps = 28/312 (8%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 L+ + + +L+ L +ER LS +T+ +Y RQ + E K+ ++L T R+ Sbjct: 13 LMIQVEAFLRYLRVERRLSPVTITNYR---RQLSVVCQILGELKVN--QWQKLDITLGRS 67 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 +K R + S+ LS ++SF ++ ++ + + + K LP+ ++ Sbjct: 68 IAAKSRRTGLQAASMALRLSALRSFCDWMVQQGELPANPVKTLHAPKAKKRLPKNMD--- 124 Query: 134 ALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 VD + LL+ + R+ +L ++YG GLR+SE + L +++ D + + Sbjct: 125 ----VDEISQLLNMDSGDPLV-VRDRTMLEVMYGAGLRLSELVGLDVKHLDLDLGEVWVM 179 Query: 192 GKGDKIRIVPL---LPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 GKG K R +PL S K LE +L P D + I + I + + Q I Sbjct: 180 GKGSKERKIPLGKTAVSWLKRWLEMRELYEPVDGAVFISTQSGKRISNRNVQKRFEQWGI 239 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 +Q + H LRHSFATH+L + G+LR +Q +LGH LSTTQIYT+++ ++ Sbjct: 240 KQ-----EVNSHINPHKLRHSFATHILESSGNLRGVQELLGHANLSTTQIYTHLDFQH-- 292 Query: 308 DWMMEIYDQTHP 319 + +YD HP Sbjct: 293 --LANVYDVAHP 302 >gi|170747111|ref|YP_001753371.1| integrase family protein [Methylobacterium radiotolerans JCM 2831] gi|170653633|gb|ACB22688.1| integrase family protein [Methylobacterium radiotolerans JCM 2831] Length = 291 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 84/282 (29%), Positives = 129/282 (45%), Gaps = 15/282 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L ERG TL +Y D +L +LA + + + +RAF+ T+ + Sbjct: 2 LAAERGAGLNTLSAYRRDLDDYLGYLAR------SGTALGDVDAGTLRAFLIDLETRGLK 55 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S R LS ++ F K+L + + ++ +LP+ L+ + L+ Sbjct: 56 ASSAARRLSCVRGFHKFLYAEGGAESDPSVAVSGPRRGRALPKVLSIAEVDRLLATAQAA 115 Query: 145 TSHETKWIDARNS----AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + AR + +L LLY GLR+SE ++L + L ++GKG + R+V Sbjct: 116 AGADQPPGPARRARRMVCLLELLYATGLRVSELVALPRTAGASRERYLIVRGKGGRERLV 175 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLS 259 PL + R A+ + P D G L F R ++ L GL P Sbjct: 176 PLTEAARAAMAAHLPAVPEDSPWLFPADSDSGY----LTRQAFARDLKVLAAAAGLHPDR 231 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + H LRH+FA+HLL NG DLR +Q +LGH +STTQIYT+V Sbjct: 232 VSPHVLRHAFASHLLQNGADLRIVQELLGHADISTTQIYTHV 273 >gi|313888282|ref|ZP_07821953.1| phage integrase, N-terminal SAM domain protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845685|gb|EFR33075.1| phage integrase, N-terminal SAM domain protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 329 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 93/309 (30%), Positives = 152/309 (49%), Gaps = 36/309 (11%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA-------------FYTEEKITIQTIRQ 65 ++L ++ +G S T++ Y D R F F+ T E I+ + Sbjct: 8 DDFLDYMKSTKGASDNTVKEYYYDLRMFARFIKRRKGLVDSKIEFDHITIEDISPDLLES 67 Query: 66 LSYTEIRAFIS-KRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKSN 123 ++ +I A+ + R +KI +RS R +S I+SF YL + I + ++++ K Sbjct: 68 VTKQDIYAYNAFLERERKISNRSKFRKISSIRSFYNYLHAKIDIIKINPVIDIDMPKVEK 127 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETK---WIDARNSAILYLLYGCGLRISEALSLTPQN 180 +LP L Q+L L L T E+K R+ AI+ L CG+R+SE + + Sbjct: 128 TLPVYLTLDQSLNL-----LKTIEESKIKPLYKKRDYAIVTLFLNCGMRLSELAGMDISH 182 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKP 237 + D +TL++ GKG+K R++ L + AI EY L P Q+ LF +R + Sbjct: 183 LQQD-NTLKVIGKGNKERVIYLNEASVYAIEEYLKLRP-------QIKDDALFLSMRQQR 234 Query: 238 LNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTT 295 ++ Q I + + GL + + H LRH+ AT L G D+R++Q ILGH ++TT Sbjct: 235 MSNRSIQHMIEKHMKNSGLDTNIYSVHKLRHTAATLLYEYGNADIRALQEILGHESVNTT 294 Query: 296 QIYTNVNSK 304 +IYT+VN K Sbjct: 295 EIYTHVNKK 303 >gi|254455124|ref|ZP_05068559.1| phage integrase [Octadecabacter antarcticus 238] gi|198263534|gb|EDY87806.1| phage integrase [Octadecabacter antarcticus 238] Length = 320 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/218 (33%), Positives = 114/218 (52%), Gaps = 18/218 (8%) Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 ++++G+K L+ +R + + +LK+ +P L++K+ + +L Sbjct: 91 QTMTGVKFLLRVTLRR----HDLVAEIFHLKEPVKVPLVLSKKE----IKRILAMAPS-- 140 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRK 208 + AR +L L YGCG+R E + L +I DQ +RI Q KG K RIV L + Sbjct: 141 --LKAR--VMLSLAYGCGMRAGEVVRLKVGDIDSDQGIIRIVQSKGRKDRIVMLPVDILS 196 Query: 209 AILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + +++ P + ++ P LF G RGK L+ R ++ R G+ T HTL Sbjct: 197 LLRDWWKERPTGQDKDVPAPERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHTL 256 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 RHSFATHLL G D+R IQ++LGH +L+TT Y +V + Sbjct: 257 RHSFATHLLERGVDIRVIQALLGHSKLTTTARYASVAT 294 >gi|84516057|ref|ZP_01003417.1| tyrosine recombinase XerD [Loktanella vestfoldensis SKA53] gi|84509753|gb|EAQ06210.1| tyrosine recombinase XerD [Loktanella vestfoldensis SKA53] Length = 306 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 88/317 (27%), Positives = 144/317 (45%), Gaps = 33/317 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +LQ E + T +Y D + F +LA Q++ +I +++ Sbjct: 6 QTFLQAQAAELDAATNTQLAYARDLQGFAEWLASRGLH------FMQVTQDQIESYLIDC 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + R LS IK ++ ++ L ++ ++ LP+ L+ L V Sbjct: 60 AADGLAKSTRARRLSAIKQLFRFAYDEGWRADNPALQIKGPGRAQRLPKTLD----LAEV 115 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D LL + + RN ++ LLY G+R+SE +SL D L ++GKG K R Sbjct: 116 DR-LLDAARASPRDGLRNGCLMELLYATGMRVSELVSLPVSAARGDPRMLLVRGKGGKER 174 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR--QLRR--YL 254 +VPL P R A+ + + + GKP + +F + + L R + Sbjct: 175 LVPLSPPARAAMAAWLAARDAAQEVAQKA-------GKPASKFLFPSHGKAGHLTRHAFF 227 Query: 255 GL-----------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 GL P T H LRH+FATHLL+ G DLRSIQ++LGH ++TT+IYT+V Sbjct: 228 GLIKGFAVTAGLSPERVTPHVLRHAFATHLLAGGADLRSIQTMLGHADIATTEIYTHVLD 287 Query: 304 KNGGDWMMEIYDQTHPS 320 + D +++ + P+ Sbjct: 288 QRLTDLVLQHHPLAKPT 304 >gi|297170713|gb|ADI21736.1| site-specific recombinase XerD [uncultured actinobacterium HF0130_15N16] Length = 317 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 90/315 (28%), Positives = 143/315 (45%), Gaps = 33/315 (10%) Query: 17 ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 E + ++ +LE R L + T SY D F +L EE + ++ I ++++ Sbjct: 13 EVEQFMHSLE-SRNLQESTRYSYGRDLESFRSWLDGRGEEIMMVEE------GTINSYVA 65 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI-----LNMRNLKKSNSLPRALNE 131 R + R+ I+SF KYL T E +I + LK P+A++ Sbjct: 66 HLRKSGRAPSGVARATVSIRSFYKYL-----TLEGHIKVDPGAAIAVLKVPQGFPKAIDI 120 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 ++ V+ +L E ++ R+ AIL LYG GLR+SE +L ++ + S LR+ Sbjct: 121 EK----VERLLNTPVGEGPYV-LRDRAILETLYGAGLRVSELTALVVDDVDLEDSFLRVF 175 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-------IQLPLFRGIRGKPLNPGVFQ 244 GKG K R+VPL + A+ + ++ L Q +F G PL+ Sbjct: 176 GKGRKERVVPLGGHAKDALAAWMSGAGREVLLERRKRTDQAQRNVFLNKFGNPLSRKGTW 235 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 +R+ GL T H LRHS ATH+L G +R +Q +LGH + +TQ+YT Sbjct: 236 AIVRRHGLRAGLGDDLTPHVLRHSCATHMLEAGASIRHVQELLGHSSIRSTQVYTGRREA 295 Query: 305 NGGDWMMEIYDQTHP 319 + IY + HP Sbjct: 296 E----LKAIYLEKHP 306 >gi|292486680|ref|YP_003529550.1| tyrosine recombinase xerC [Erwinia amylovora CFBP1430] gi|292897917|ref|YP_003537286.1| tyrosine recombinase [Erwinia amylovora ATCC 49946] gi|291197765|emb|CBJ44860.1| tyrosine recombinase [Erwinia amylovora ATCC 49946] gi|291552097|emb|CBA19134.1| Tyrosine recombinase xerC [Erwinia amylovora CFBP1430] Length = 302 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 79/307 (25%), Positives = 149/307 (48%), Gaps = 19/307 (6%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 LL + +L+ L++ER LS LT +Y ++ L +++ + +L + +R+ Sbjct: 7 LLTATEGFLRYLKVERQLSPLTQVNYRRQLSAIIVLL-----DELKVVEWARLDASLVRS 61 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 ++ + SL LS ++SFL +L + + + + + LP+ ++ + Sbjct: 62 LAARSTRSGLKPASLALRLSALRSFLDWLVSQGAIKANPAKGVATPRAARHLPKNIDVDE 121 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L++ L + R+ A+L +YG GLR+SE + + ++ + + GK Sbjct: 122 VNRLLEIDL------NDPLAVRDRAMLEAMYGAGLRLSELVGIDLGHLDLASGEVWVIGK 175 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 G K R +P+ + + + + F+ N LF +GK ++ Q+ + Sbjct: 176 GSKERRLPMGRTAVHWVENWLAMRELFEPQDN---ALFLSNQGKRISTRNVQKRFAEWGV 232 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 G+ H LRHSFATH+L + GDLR++Q +LGH L+TTQIYT+++ ++ + Sbjct: 233 KQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----LAS 288 Query: 313 IYDQTHP 319 +YD HP Sbjct: 289 VYDAAHP 295 >gi|297184071|gb|ADI20190.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11] Length = 343 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 94/306 (30%), Positives = 161/306 (52%), Gaps = 27/306 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L ERG S T +Y+ + ++ ++L EE +++ ++ +I R Sbjct: 55 FLAYLIAERGYSPKTSVAYKKELERWALYL---REE--ADASLKAAQKAHVKRYIVWRNK 109 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q I RS+ RSLS I++F K+ + + E+ +R++K + + ++ + LV++ Sbjct: 110 QGISPRSINRSLSCIRTFYKWAIREALVCENPGQGVRSMKTAKKVVMSVPKDDLKALVND 169 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 L T T + R+ +L LLYG GLR +E +SLTP + + +R+ GK +K R + Sbjct: 170 PELFT---TDFEGRRDQLLLLLLYGLGLRRAEVISLTPTHFDWSRKLVRVIGKRNKERQI 226 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP------LFRGIRGKPLNPG-VFQRYIRQLRRY 253 P+ A+LE Y L + + QLP L +GK L V+ R + L R Sbjct: 227 PM-----PALLEEYYL--RYVEIRDQLPVRHDATLLLTAKGKKLYDNLVYNRVLFYLNRT 279 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 + + H LRHS+ATHLL+ G D+ +++ +LGH LS+TQ+YT + + ++++ Sbjct: 280 TSV-VDKNPHALRHSYATHLLNAGVDINTVKELLGHESLSSTQVYTT----SSFEELIKV 334 Query: 314 YDQTHP 319 Y+QTHP Sbjct: 335 YNQTHP 340 >gi|254452011|ref|ZP_05065448.1| integrase [Octadecabacter antarcticus 238] gi|198266417|gb|EDY90687.1| integrase [Octadecabacter antarcticus 238] Length = 202 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 60/149 (40%), Positives = 84/149 (56%), Gaps = 4/149 (2%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC 217 +L L YGCG+R E + L +I DQ +RI Q KG K RIV L + + +++ Sbjct: 28 MLSLAYGCGMRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRIVMLPVDILSLLRDWWKER 87 Query: 218 PFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 P + ++ P LF G RGK L+ R ++ R G+ T HTLRHSFATHLL Sbjct: 88 PTGQDKDVPAPERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHTLRHSFATHLL 147 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 G D+R IQ++LGH +L+TT Y +V + Sbjct: 148 ERGVDIRVIQALLGHSKLTTTARYASVAT 176 >gi|163869346|ref|YP_001610602.1| integrase/recombinase XerD [Bartonella tribocorum CIP 105476] gi|161019049|emb|CAK02607.1| integrase/recombinase XerD [Bartonella tribocorum CIP 105476] Length = 312 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 86/318 (27%), Positives = 156/318 (49%), Gaps = 23/318 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY--TEIRAFIS 76 + +L+ + ERG S TL +Y+ D + + +++++ ++ S ++ +S Sbjct: 8 ERFLEMMSAERGASAHTLAAYQHDLQ--------WAQDELSSHSVSLFSAQKEDLIGLLS 59 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 T S R LS ++ F ++L + + ++ ++ LP+ ++E + Sbjct: 60 LMHTFGFAATSQARRLSTLRQFYQFLYAEGLRADDPSHDIDAPRQGRPLPKIISEDVVIK 119 Query: 137 LVDNVLLHTSH----ETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 +D L + ++ A R + +LY GLRISE +SL Q + + +L ++ Sbjct: 120 FLDLAQLEVNQADYGSKDYLRALRLQLLSEMLYATGLRISELVSLPVQAVRGKEYSLLVR 179 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQL 250 GKG K R+V L + +L++ DL + L LF + V R ++ L Sbjct: 180 GKGKKERMVLLSKKAYQVLLQWLDLRDQGKDAK-SLYLFPAHSETGYIARQVVARELKNL 238 Query: 251 RRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 + G+ S + H LRH+FA+HLL NG DLR++Q +LGH +STTQIYT+V + Sbjct: 239 AKRAGITSESFSPHVLRHAFASHLLQNGADLRAVQHLLGHSDISTTQIYTHVLEEG---- 294 Query: 310 MMEIYDQTHP-SITQKDK 326 + + ++ HP + TQK + Sbjct: 295 LYRLVNEHHPLADTQKAR 312 >gi|160900549|ref|YP_001566131.1| tyrosine recombinase XerD [Delftia acidovorans SPH-1] gi|160366133|gb|ABX37746.1| tyrosine recombinase XerD [Delftia acidovorans SPH-1] Length = 327 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 84/283 (29%), Positives = 141/283 (49%), Gaps = 15/283 (5%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 + L +E GLS+ TL +Y D + +LA + + + + +L E++ + + R Q Sbjct: 41 MDALLLEDGLSRNTLAAYRRDLTAWGRWLA-HQQPPLALDAAGEL---ELQGYFAVRVEQ 96 Query: 82 KIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 S R L+ ++ + + L++++I + M ++ +P L + Q V+ Sbjct: 97 TKASSS-NRRLTVLRRYYHWALREQRIAADPTA-RMLAARQPPRVPHTLTQAQ----VEA 150 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 +L +T + R+ A+L L+Y GLR+SE + L I LR+ GKG K R+V Sbjct: 151 LLRAPDVDTP-LGLRDRAMLELMYASGLRVSELVDLPLHGIDLRSGVLRVTGKGQKERLV 209 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 P LE Y L Q +F RG ++ +F +++ + G+ Sbjct: 210 PFGQEAHW-WLERYLATARGAILGGQRSDAVFVTQRGAAMSRVMFWVIVKRCAQVAGVTA 268 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + HTLRH+FATHLL++G DLR +Q +LGH +STT IYT+V Sbjct: 269 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTTIYTHV 311 >gi|17547263|ref|NP_520665.1| site-specific tyrosine recombinase XerD [Ralstonia solanacearum GMI1000] gi|34222936|sp|Q8XWD0|XERD_RALSO RecName: Full=Tyrosine recombinase xerD gi|17429565|emb|CAD16251.1| probable integrase/recombinase protein [Ralstonia solanacearum GMI1000] Length = 308 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 80/303 (26%), Positives = 140/303 (46%), Gaps = 18/303 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q + L +E GL++ TL +Y D + +LA + + Q ++ + + R Sbjct: 20 QRFCDALWLEDGLARNTLDAYRRDLTLYAQWLAGRG------KALDQTEDVDLSDYFAAR 73 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + +R + K F ++ + + + + K+ +P+ L+E Q L+ Sbjct: 74 HEDSLASTANRRR-TVFKRFFQWALREHLVSADPTRLLSTAKQPPRVPKTLSEAQVEALI 132 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGDKI 197 + + R+ A++ L+Y GLR+SE ++L + ++ +R I GKG K Sbjct: 133 AAPDVDAP-----LGLRDRAMIELMYASGLRVSEIVALKTVEVGLNEGVVRVIGGKGGKD 187 Query: 198 RIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 R+VP + Y D L LF RG + F I++ + + Sbjct: 188 RLVPFGAEAGDWLRRYLRDGRTALLGERTADALFVTARGDGMTRQAFWYLIKRYAQRADI 247 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V + + ++ Q Sbjct: 248 HAPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARER----LRTLHAQ 303 Query: 317 THP 319 HP Sbjct: 304 HHP 306 >gi|284032633|ref|YP_003382564.1| integrase family protein [Kribbella flavida DSM 17836] gi|283811926|gb|ADB33765.1| integrase family protein [Kribbella flavida DSM 17836] Length = 312 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 79/301 (26%), Positives = 148/301 (49%), Gaps = 13/301 (4%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++ ++L ERGLS+ ++++Y D + + + ++ IR L R++++K++ Sbjct: 22 DYERHLTAERGLSEHSVRAYMGDVADLIDHVTRLGHDDLSALDIRGL-----RSWLAKQQ 76 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + ++ R + + F + ++ +I T+ L + + K +LP L + ++ Sbjct: 77 SLGKARSTMARRATAARVFTAWAQRTGRIATDPGAL-LASPKAHKTLPGVLGQADTRAVL 135 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + + + R+ I+ LLY G+R+ E +L + + +R+ GKG K R Sbjct: 136 DAAAVAADDGSP-VGLRDLTIMELLYATGIRVGELCALDVDEVDRSRRVVRVFGKGRKER 194 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VP +A+ + + P + LF G RG ++ +R + + P Sbjct: 195 SVPYGVPAAEALETWLAVRPRLVRDGSGPALFLGARGGRIDQRTVRRVVHARIGAVEAP- 253 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + H LRH+ ATHLL G DLRS+Q +LGH L+TTQ+YT+V+S+ + Y+Q H Sbjct: 254 DLSPHGLRHTAATHLLEGGADLRSVQELLGHASLATTQVYTHVSSER----LRSAYEQAH 309 Query: 319 P 319 P Sbjct: 310 P 310 >gi|225025733|ref|ZP_03714925.1| hypothetical protein EIKCOROL_02637 [Eikenella corrodens ATCC 23834] gi|224941514|gb|EEG22723.1| hypothetical protein EIKCOROL_02637 [Eikenella corrodens ATCC 23834] Length = 301 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 127/241 (52%), Gaps = 31/241 (12%) Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 R+LS +K +L+ + +++ ++R ++ +LP + E Q +D +L ET Sbjct: 79 RALSAVKQLYGFLQLQNRRSDNPAQHLRPPRQGRALPPLIGEAQ----IDALLAAPDTET 134 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL------- 202 + R+ A+L LY GLR+SEA + Q++ + + + GKG+K RIVPL Sbjct: 135 IF-GLRDKAVLETLYATGLRVSEAAQMQLQDLDLQRGVVTVIGKGNKQRIVPLGAEAVYW 193 Query: 203 ----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 L + R +L++ C F +F G + ++ + + +++ G+ Sbjct: 194 LERYLKTARGELLKHTP-CDF---------VFVGQKRSGISRQLVWQMVKRYAAEAGIS- 242 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + H LRH+FATHL+++G DLRS+Q +LGH L+TTQIYT+V ++ + ++ Q H Sbjct: 243 ELSPHGLRHAFATHLVNHGADLRSVQMMLGHASLNTTQIYTHVANER----LKQLVAQHH 298 Query: 319 P 319 P Sbjct: 299 P 299 >gi|325269556|ref|ZP_08136172.1| site-specific tyrosine recombinase XerC [Prevotella multiformis DSM 16608] gi|324988175|gb|EGC20142.1| site-specific tyrosine recombinase XerC [Prevotella multiformis DSM 16608] Length = 297 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 76/304 (25%), Positives = 142/304 (46%), Gaps = 23/304 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L +ER S +T+ SY D +F F E QLS+ + + + + Sbjct: 10 FLDYLRLERNYSPMTVTSYRKDLEEFERFFQDLEE---------QLSWETVDSDVVRNWM 60 Query: 81 QKIGDR-----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 + + DR S+ R LS ++SF ++ +R + + ++ K+ LP+ L E + Sbjct: 61 EDMMDRGNAASSVNRRLSSLRSFYRFALRRSLVRRDPVHGLQGPKRQKPLPQFLKESEME 120 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L++ + S++ D ++ Y G+R+SE L +++ L++ GK D Sbjct: 121 RLLEPGMWTDSYK----DVLARTLIMTFYETGVRVSELTGLDDKDVDGLTCELKVTGKRD 176 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 K RI+P + + + Y + + + LFR +G + G + +++ + Sbjct: 177 KQRIIPFGRELAETLAAYRQVRGAAVKGD-SAALFRTEKGVRMTDGQVRALVKKHLSRVS 235 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 T H LRH+FAT +L++ L S++ +LGH LSTT+IYT+ + + ++Y Sbjct: 236 TLKKRTPHVLRHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHTTFEQ----LKKVYK 291 Query: 316 QTHP 319 HP Sbjct: 292 NAHP 295 >gi|307565729|ref|ZP_07628198.1| phage integrase, N-terminal SAM domain protein [Prevotella amnii CRIS 21A-A] gi|307345555|gb|EFN90923.1| phage integrase, N-terminal SAM domain protein [Prevotella amnii CRIS 21A-A] Length = 292 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 78/301 (25%), Positives = 145/301 (48%), Gaps = 15/301 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +E+G S T++SY D F +F +E++T+++I IR ++ Sbjct: 5 EQFLSYLSLEKGYSLKTIESYREDLNGFELFYK-SCDEQLTLKSIDS---DVIRNWVEYM 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 K S+ R LS ++S +YL K + + + +R KK LP + E + + Sbjct: 61 MDNKAAVSSVNRRLSALRSLYRYLLKHRFVEKDPVHGVRGPKKQKPLPVFVKESE----M 116 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D +L + D AI+ +LY G+R+SE L ++ T+++ GK +K R Sbjct: 117 DCLLRKEMWGGVYNDVLARAIIMMLYETGMRLSEITGLDMSSVDFYTCTVKVTGKRNKQR 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 I+P+ + + + Y +++ + F +G +N + +++ + Sbjct: 177 IIPIGQELEEELKSY---LKKRVSVEGEKAFFVTEKGIRVNANQVRYLVKKNLSKVSTLK 233 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 T H LRHSFAT +L++ L S++ +LGH L+TT++YT+ + + +IY H Sbjct: 234 KRTPHVLRHSFATAMLNHKAGLESVRKLLGHESLATTEVYTHTTFEQ----LKQIYKSAH 289 Query: 319 P 319 P Sbjct: 290 P 290 >gi|145593868|ref|YP_001158165.1| phage integrase family protein [Salinispora tropica CNB-440] gi|145303205|gb|ABP53787.1| phage integrase family protein [Salinispora tropica CNB-440] Length = 325 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 83/300 (27%), Positives = 135/300 (45%), Gaps = 24/300 (8%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 S T+++Y D L + +T L+ +IR++++++RT +L R Sbjct: 36 STHTVRAYVADVISLLDHAV-----RAGARTPADLTLAQIRSWLARQRTTGAARSTLARR 90 Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 + ++F + + + + + LP L QA L++ H + + Sbjct: 91 SAAARTFSAWAHRDGRLPVDVAAGLASPRAHRELPAVLPVDQAAALLETA--HAAPRGQP 148 Query: 152 IDA-----------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 D R+ +L LLY G+R+SEA L ++ + LR+ GKG + R V Sbjct: 149 TDDVPPGAADPVRLRDQLLLELLYATGVRVSEACGLNVADVDPGRRVLRVFGKGGRERSV 208 Query: 201 PL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P +P+ R P + L G RG LNP + + + GLP Sbjct: 209 PYGVPAQRTLDAWLRHGRPRLVGAQSANALLLGARGGRLNPTTARGIVGRYTTAAGLP-R 267 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T+ H LRH+ ATHLL G DLR++Q +LGH L++TQIYT+V+ + + Y Q HP Sbjct: 268 TSPHGLRHTAATHLLEGGADLRTVQELLGHSSLASTQIYTHVSVER----LRSAYRQAHP 323 >gi|269121304|ref|YP_003309481.1| integrase family protein [Sebaldella termitidis ATCC 33386] gi|268615182|gb|ACZ09550.1| integrase family protein [Sebaldella termitidis ATCC 33386] Length = 304 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 84/314 (26%), Positives = 151/314 (48%), Gaps = 42/314 (13%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L E+G S+ TL SY+ D F++E Q+I E+ ++ K + Sbjct: 10 FLDYLRYEKGSSENTLSSYKRDLN------LFFSEVPKNFQSIED---EEVIEYVDKL-S 59 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + ++ R ++ I++F K+ K T++ +++NLK+ LP L + ++D Sbjct: 60 KTVKRNTVLRKIASIRAFYKFCYINKYITDNPTESLKNLKREFKLPEVLKLSEIKDIID- 118 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGKGDKIRI 199 + +T R+ I+ +L G RISE L+L +++ + D +R+ GKG K R+ Sbjct: 119 AIPNTPE-----GVRDKIIIKILVATGARISEVLTLDIKDVENQDYEFIRVLGKGSKYRL 173 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLN----------------IQLPLFRGIRGKPLNPGVF 243 +P+ + + I Y + L L ++ LF G R + F Sbjct: 174 IPIYSQLEEEIKAYIENDRKILVLERKEKESENKNKKKGHELEYKLFLGTRREN-----F 228 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + +++ + + + H RHS AT L++NG D+R +Q ILGH +STT+IYT+V Sbjct: 229 WKRLKKYAKNAKIEKNVYPHIFRHSVATMLINNGADIRIVQEILGHVNISTTEIYTHV-- 286 Query: 304 KNGGDWMMEIYDQT 317 G + EIY++ Sbjct: 287 --GKRELKEIYNKV 298 >gi|259906886|ref|YP_002647242.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|224962508|emb|CAX53963.1| Tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|283476679|emb|CAY72508.1| Tyrosine recombinase xerC [Erwinia pyrifoliae DSM 12163] gi|310766134|gb|ADP11084.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 302 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 86/307 (28%), Positives = 146/307 (47%), Gaps = 19/307 (6%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 LL + +L+ L++ER LS LT Y RQ + E K+ + A Sbjct: 7 LLAGVEGFLRFLKVERQLSPLTQIGYR---RQLSAIIVLLDELKVVEWARLDAALVRALA 63 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 S R K +L+ LS ++SFL +L + + + + + LP+ ++ + Sbjct: 64 ARSTRSGLKPASLALR--LSALRSFLDWLVSQGAIKANPAKGVATPRAARHLPKNIDVDE 121 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L+D L + R+ A+L ++YG GLR+SE + + ++ + + GK Sbjct: 122 VNRLLDIDL------NDPLAVRDRAMLEVMYGAGLRLSELVGIDLGHLDLASGEVWVVGK 175 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 G K R +P+ + I + ++ F+ N LF +GK ++ Q+ + Sbjct: 176 GSKERRLPMGRTAVHWIENWLEMRELFEPQDN---ALFLSNKGKRISTRNVQKRFAEWGV 232 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 G+ H LRHSFATHLL + GDLR++Q +LGH L+TTQIYT+++ ++ + Sbjct: 233 KQGMSSHIHPHKLRHSFATHLLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----LAS 288 Query: 313 IYDQTHP 319 +YD HP Sbjct: 289 VYDAAHP 295 >gi|218885463|ref|YP_002434784.1| tyrosine recombinase XerD [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756417|gb|ACL07316.1| tyrosine recombinase XerD [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 290 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 87/301 (28%), Positives = 143/301 (47%), Gaps = 18/301 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +L+ L IERGL++ TL +Y D F FLA + I ++ + + + +I R Sbjct: 3 GYLEYLLIERGLAENTLAAYAADLADFAGFLA---QGGIDLEAATEQT---LFLYIVDLR 56 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + + R+L R LS ++ + + + + N K +LP L + ++ Sbjct: 57 RRGLTSRTLSRHLSALRGLFAHGVAQGQLAADPLRYLENPKLPRTLPDVLTRDEMAAVLA 116 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 L + + R+ +L LLY GLR+SE L P + +R+ GKG K RI Sbjct: 117 RPDL-----SDRLGFRDRTMLELLYASGLRVSELCGLRPLDFDPMTGLVRVFGKGSKERI 171 Query: 200 VPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VP+ + K + Y D P ++ LF GK L + +++ G+ Sbjct: 172 VPVHDTAAKLLSAYIRDWRP--AFRPVEDALFLNRSGKGLTRQAVWKVVKRHVAEAGIRK 229 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + HT RHSFATHLL G DLR++Q +LGH ++ T+IYT+V + D + +++ H Sbjct: 230 DISPHTFRHSFATHLLDGGADLRTVQMLLGHADIAATEIYTHVQA----DRLRQVHRAHH 285 Query: 319 P 319 P Sbjct: 286 P 286 >gi|117928754|ref|YP_873305.1| phage integrase family protein [Acidothermus cellulolyticus 11B] gi|117649217|gb|ABK53319.1| tyrosine recombinase XerC subunit [Acidothermus cellulolyticus 11B] Length = 336 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 85/332 (25%), Positives = 149/332 (44%), Gaps = 44/332 (13%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 + ++L+ ER LS T+++Y D R + E++ + L+ +R++++K T Sbjct: 14 FARHLQYERSLSSHTVRAYLTDLRDLVDH-----AERLGCREPADLTVAVLRSYLAKLDT 68 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 ++ R + + F Y K+ + + K LP L + QA +++ Sbjct: 69 VGRARTTIARRAAAARVFTAYCSKKGWMSHDPGRRLGTPKVVRPLPDVLTQAQARAVLER 128 Query: 141 VLLHTSHETKWIDA-------------------------------RNSAILYLLYGCGLR 169 + + DA R+ AIL +LY G+R Sbjct: 129 AEQRAGPDAE-ADAGAIGVPEDAREDAGAANAAQDVDTISLARRLRDRAILEVLYATGIR 187 Query: 170 ISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY--YDLCPFDLNLNIQL 227 + E ++L +I ++ + + GKG+K R VP+ +A+ ++ + F + Sbjct: 188 VGELVALETDDIAWVRAVIHVIGKGNKERTVPIGQPALRAVEQWLRHGRPAFQTGASGSA 247 Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 +F G+RG+ ++P +R + R L H LRHS ATHLL G DLRS+Q IL Sbjct: 248 -IFLGVRGRRIDPREVRRVVYAATRDLPDAPRLGPHGLRHSAATHLLEGGADLRSVQEIL 306 Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 GH L+TTQ+YT+V+ + + YD+ HP Sbjct: 307 GHATLATTQLYTHVSIER----LRATYDRAHP 334 >gi|23335386|ref|ZP_00120622.1| COG0582: Integrase [Bifidobacterium longum DJO10A] gi|189439114|ref|YP_001954195.1| site-specific tyrosine recombinase XerC [Bifidobacterium longum DJO10A] gi|317482492|ref|ZP_07941508.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA] gi|322689440|ref|YP_004209174.1| tyrosine recombinase [Bifidobacterium longum subsp. infantis 157F] gi|254799326|sp|B3DQV1|XERC_BIFLD RecName: Full=Tyrosine recombinase xerC gi|189427549|gb|ACD97697.1| Integrase [Bifidobacterium longum DJO10A] gi|316916044|gb|EFV37450.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA] gi|320460776|dbj|BAJ71396.1| tyrosine recombinase [Bifidobacterium longum subsp. infantis 157F] Length = 355 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 82/337 (24%), Positives = 144/337 (42%), Gaps = 62/337 (18%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +++ L+ RGLS TL++Y D L E + + +++ ++R++++ Sbjct: 12 SFVSYLKSNRGLSANTLKAYRADLTACLHLF-----ELRGVTDLNEITLDDLRSWMAVE- 65 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 ++ S+ R ++ F + + +TT + ++LP L E QA L+D Sbjct: 66 SRDHARSSMARKTVAVRGFFAWAYEHGLTTTDPAATLMTPSIPSTLPAVLTESQAEQLLD 125 Query: 140 NVLLHTSHETKWID---------------------------------------------- 153 V H ++ D Sbjct: 126 -VAEHAVATNQYKDDGGAAAAPGSGKAAGKTADKSADTVNRSEAPARADKRDNARVTAES 184 Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213 RN+AIL LLY G+R++E +S+ +I T+++ GKG+K R+VP ++A+ + Sbjct: 185 QRNAAILELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGNKQRVVPFGLPAQRALETW 244 Query: 214 YD--------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + + LF G RG ++ + + + + R G+P + H L Sbjct: 245 LEQGRPVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVP-DISPHAL 303 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 RHS ATH+L G DLR +Q +LGH L TTQ YT+V+ Sbjct: 304 RHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVS 340 >gi|256832233|ref|YP_003160960.1| integrase family protein [Jonesia denitrificans DSM 20603] gi|256685764|gb|ACV08657.1| integrase family protein [Jonesia denitrificans DSM 20603] Length = 333 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 125/259 (48%), Gaps = 15/259 (5%) Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 E+R +++ TQ + ++ R + + F +L +R I + + ++LP L Sbjct: 79 ELREWLAHSLTQNLSRSTIARRGASARQFFAWLVERGIRHDDPSKRLTTPTPHSALPHVL 138 Query: 130 NE---KQALTLVDNVLL--HTSHETKWIDARNS---AILYLLYGCGLRISEALSLTPQNI 181 KQ L V+ V L T T+ AR A + L Y GLRI+E +SL +I Sbjct: 139 TVAQVKQLLAAVERVYLPETTDTNTELSRARTDRLRAAVELTYSSGLRIAELVSLNVGDI 198 Query: 182 MDDQSTLRIQGKGDKIRIVPL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240 +Q +R+ GKG+K R VPL LP++ +A+ + + + LF G+RG N Sbjct: 199 DHEQRVIRVTGKGNKQRRVPLGLPAL-QALERWIAESRPIMQSTSEEALFLGVRGGRWNA 257 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + + + + L + H LRH+ ATHLL G DLRS+Q ILGH L TTQ YT+ Sbjct: 258 RQVRDELNKAALHADLDV-VRPHDLRHTTATHLLEGGADLRSVQEILGHSSLRTTQRYTH 316 Query: 301 VNSKNGGDWMMEIYDQTHP 319 V + + Y HP Sbjct: 317 VTMTR----LRDTYAHAHP 331 >gi|187477407|ref|YP_785431.1| site-specific tyrosine recombinase XerD [Bordetella avium 197N] gi|115421993|emb|CAJ48515.1| tyrosine recombinase [Bordetella avium 197N] Length = 314 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 83/300 (27%), Positives = 142/300 (47%), Gaps = 14/300 (4%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 + L +E GL+ TL +Y D F +L T + + Q + + S +I A+ + Q Sbjct: 25 IDALWLEDGLAANTLAAYRRDLSAFARWLQ-QTGQAASGQ-LCEASGGDIEAWFAVLH-Q 81 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 + R L+ ++ F + + K T L + ++ +P+ L+E Q L+ Sbjct: 82 DSRPATANRRLATLRRFYAWALREKRTGTDPCLKLAAARQPLRVPKTLSEAQVEALLGAP 141 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV 200 L T R+ A+L LY GLR+SE + L ++ +R+ QGKG K R+V Sbjct: 142 DLGTPRGL-----RDRAMLETLYATGLRVSELVELQTLDVSLSDGVVRVVQGKGGKDRLV 196 Query: 201 PLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ + Y + P + LF R + ++ F + +++ + + Sbjct: 197 PMGAEAAHWLQRYLNQARPVLVGARQSDALFVTGRAQAMSRQAFWQLVKKYAQRADVHAP 256 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H LRH+FATHLL++G DLR +Q +LGH +STTQIYT+V + + ++ HP Sbjct: 257 LSPHVLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARER----LKALHAAHHP 312 >gi|309809264|ref|ZP_07703133.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN 2503V10-D] gi|308170377|gb|EFO72401.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN 2503V10-D] Length = 307 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 93/321 (28%), Positives = 152/321 (47%), Gaps = 42/321 (13%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 + LK N+L+N ER S T ++Y D + F+ E I I+ LS +I Sbjct: 6 DFLKLYYNYLKN---ERNYSINTCKAYMDDLSEAR---TFFVENGGFIDWIK-LSSRDIE 58 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALN 130 FI +K + R +S ++SF ++L KR I ++++R K LP L Sbjct: 59 IFIQYLAQKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGEHKK--LPEFLY 116 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 + + ++ ++ T + RN A+L L Y G+R+SE +L + I + + + + Sbjct: 117 NDEMVKVLKSI-----STTTPLGLRNMALLELFYATGMRVSEIANLKLEQIDFELNLILV 171 Query: 191 QGKGDKIRIVP------------LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238 GKG+K R V L+ + +K +L D LN N RG+ Sbjct: 172 HGKGNKDRYVAFGEEAKTALNNYLVEARKKILLHKTDYGYVFLNSNGNRITSRGL----- 226 Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + I+ + G+ S H LRH+FAT +L+NG DLR++Q +LGH +STTQIY Sbjct: 227 -----EYIIKNIFLNAGVSASVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIY 281 Query: 299 TNVNSKNGGDWMMEIYDQTHP 319 T+V ++ + +IY + P Sbjct: 282 THVTKQH----LCDIYHKYFP 298 >gi|257125886|ref|YP_003164000.1| integrase family protein [Leptotrichia buccalis C-1013-b] gi|257049825|gb|ACV39009.1| integrase family protein [Leptotrichia buccalis C-1013-b] Length = 356 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 119/239 (49%), Gaps = 13/239 (5%) Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + RS+ R +S +++F KYL++ + T +++ ++M +K LP LN N Sbjct: 125 VSRRSINRKISALRTFFKYLQEINVIETNKASYISMPKFEKE--LPNVLNRDDL-----N 177 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 L H + K R+ I+ LLY GLR E ++L+ I ++ +R+ GKG+K R+ Sbjct: 178 KLRHVINTEKITGIRDRLIIELLYSSGLRSIELINLSEFMIDIEEREIRVIGKGEKERVT 237 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 + +K +++Y D + L +GK L +R I G+ Sbjct: 238 FFSENAKKWLIKYIDEKKKQYENYTREVLIVNSKGKKLTTRSLRRLISGHVHEAGIEKEI 297 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T H RHSFA LL+NG +++ +Q ++GH ++ TQ+YT+VN ++ +IY H Sbjct: 298 TPHVFRHSFAMELLNNGVEIQYLQELMGHSSIAATQVYTHVNK----TFLKDIYMNAHS 352 >gi|309804146|ref|ZP_07698224.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV 11V1-d] gi|315653524|ref|ZP_07906445.1| tyrosine recombinase XerC [Lactobacillus iners ATCC 55195] gi|308163729|gb|EFO65998.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV 11V1-d] gi|315489215|gb|EFU78856.1| tyrosine recombinase XerC [Lactobacillus iners ATCC 55195] Length = 307 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 90/311 (28%), Positives = 149/311 (47%), Gaps = 22/311 (7%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 + LK N+L+N ER S T ++Y D + F+ E I I+ LS +I Sbjct: 6 DFLKLYYNYLKN---ERNYSINTCKAYMDDLSEAR---TFFVENGGFIDWIK-LSSRDIE 58 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALN 130 FI +K + R +S ++SF ++L KR I ++++R K LP L Sbjct: 59 IFIQYLAQKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGEHKK--LPEFLY 116 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 + + ++ ++ T + RN A+L L Y G+R+SE +L + I + + + + Sbjct: 117 NDEMVKVLKSI-----STTTPLGLRNMALLELFYATGMRVSEIANLKLEQIDFELNLILV 171 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIR 248 GKG+K R V + A+ Y L L+ +F G + + I+ Sbjct: 172 HGKGNKDRYVAFGEEAKTALNNYLVEARKKLLLHKTDYGYVFLNSNGNRITSRGLEYIIK 231 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 + G+ S H LRH+FAT +L+NG DLR++Q +LGH +STTQIYT+V ++ Sbjct: 232 NIFLNAGVSASVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQH--- 288 Query: 309 WMMEIYDQTHP 319 + +IY + P Sbjct: 289 -LCDIYHKYFP 298 >gi|291542679|emb|CBL15789.1| Site-specific recombinase XerD [Ruminococcus bromii L2-63] Length = 327 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 91/303 (30%), Positives = 145/303 (47%), Gaps = 35/303 (11%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAF----------YTEEKIT------IQTIR-QLSYTEI 71 + +SK T+ Y D R F FL + E KI I+T+ +L+Y + Sbjct: 24 KNMSKKTVDEYFIDLRTFFRFLKVMRGLVPDGTEFDEIKIDDVDLDLIKTVNLELAYDYM 83 Query: 72 RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN-ILNMRNLKKSNSLPRALN 130 F+ + R K R+ R S +K F KY+ K ++N + + + K +LP+ L Sbjct: 84 N-FLYRDRNNKSASRA--RKCSSLKGFFKYITNNKHLLDTNPVEQLESPKNKKALPKYLT 140 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 +Q++ L++ V + R+ IL L CGLR+SE L +I D T+R+ Sbjct: 141 LEQSIELLNAVDGNNKQ-------RDYCILTLFLNCGLRVSEMAGLNYNDIHSD-GTMRV 192 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 GKG+K RIV L + A EY + P D + + LF + ++ Q + + Sbjct: 193 VGKGNKERIVYLNSACIDAYNEYMKVRPID-EVKDKKALFISRNHRRMSVKTIQAMVYKY 251 Query: 251 RRYLGL-PLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNS---KN 305 +GL + H LRH+ AT + GG D+R ++ +LGH L TT+IYT+++S KN Sbjct: 252 LEKIGLDSQGYSCHKLRHTAATLMYQQGGVDVRVLKEVLGHENLGTTEIYTHLSSEQMKN 311 Query: 306 GGD 308 D Sbjct: 312 AAD 314 >gi|260760651|ref|ZP_05872994.1| integrase/recombinase xerD [Brucella abortus bv. 2 str. 86/8/59] gi|260671083|gb|EEX57904.1| integrase/recombinase xerD [Brucella abortus bv. 2 str. 86/8/59] Length = 309 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 91/302 (30%), Positives = 133/302 (44%), Gaps = 38/302 (12%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +N+L+ + ERG ++ TL+SY D LA +T IR + Sbjct: 10 ENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAET------GHIRMTLDTM 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q S R LS ++ F ++L + + KK LP+ ++ + L+ Sbjct: 64 AAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILYAPKKQKPLPKIMSVENVGKLL 123 Query: 139 DNVLLHTSHET---KWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 D L + + I A R A+L LY GLR+SE + L D L ++GKG Sbjct: 124 DRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKG 183 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----------- 243 K R+VPL R A+ ++ L L LP G NP +F Sbjct: 184 SKDRMVPLSRKARDALQKF-------LTLRDSLP------GSDDNPWLFPTFSESGHLAR 230 Query: 244 QRYIRQLRRYLGLPLSTT----AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 Q + R+L+ H LRH+FA+HLL NG DLR++Q +LGH +STTQIYT Sbjct: 231 QVFARELKGLAARAGLAASSASPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYT 290 Query: 300 NV 301 +V Sbjct: 291 HV 292 >gi|312170746|emb|CBX79008.1| Tyrosine recombinase xerC [Erwinia amylovora ATCC BAA-2158] Length = 302 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 79/307 (25%), Positives = 148/307 (48%), Gaps = 19/307 (6%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 LL + +L+ L++ER LS LT +Y ++ L +++ + +L +R+ Sbjct: 7 LLTATEGFLRYLKVERQLSPLTQVNYRRQLSAIIVLL-----DELKVVEWARLDAALVRS 61 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 ++ + SL LS ++SFL +L + + + + + LP+ ++ + Sbjct: 62 LAARSTRSGLKPASLALRLSALRSFLDWLVSQGAIKANPAKGVATPRAARHLPKNIDVDE 121 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L++ L + R+ A+L +YG GLR+SE + + ++ + + GK Sbjct: 122 VNRLLEIDL------NDPLAVRDRAMLEAMYGAGLRLSELVGIDLGHLDLASGEVWVIGK 175 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 G K R +P+ + + + + F+ N LF +GK ++ Q+ + Sbjct: 176 GSKERRLPMGRTAVHWVENWLAMRELFEPQDN---ALFLSNQGKRISTRNVQKRFAEWGV 232 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 G+ H LRHSFATH+L + GDLR++Q +LGH L+TTQIYT+++ ++ + Sbjct: 233 KQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH----LAS 288 Query: 313 IYDQTHP 319 +YD HP Sbjct: 289 VYDAAHP 295 >gi|237816384|ref|ZP_04595377.1| tyrosine recombinase XerD [Brucella abortus str. 2308 A] gi|260546138|ref|ZP_05821878.1| tyrosine recombinase xerD [Brucella abortus NCTC 8038] gi|260755704|ref|ZP_05868052.1| integrase/recombinase xerD [Brucella abortus bv. 6 str. 870] gi|260758929|ref|ZP_05871277.1| integrase/recombinase xerD [Brucella abortus bv. 4 str. 292] gi|260884731|ref|ZP_05896345.1| tyrosine recombinase xerD [Brucella abortus bv. 9 str. C68] gi|297247261|ref|ZP_06930979.1| tyrosine recombinase XerD [Brucella abortus bv. 5 str. B3196] gi|88952695|sp|Q2YR40|XERD_BRUA2 RecName: Full=Tyrosine recombinase xerD gi|90140493|sp|P0C122|XERD_BRUAB RecName: Full=Tyrosine recombinase xerD gi|237788451|gb|EEP62666.1| tyrosine recombinase XerD [Brucella abortus str. 2308 A] gi|260096245|gb|EEW80121.1| tyrosine recombinase xerD [Brucella abortus NCTC 8038] gi|260669247|gb|EEX56187.1| integrase/recombinase xerD [Brucella abortus bv. 4 str. 292] gi|260675812|gb|EEX62633.1| integrase/recombinase xerD [Brucella abortus bv. 6 str. 870] gi|260874259|gb|EEX81328.1| tyrosine recombinase xerD [Brucella abortus bv. 9 str. C68] gi|297174430|gb|EFH33777.1| tyrosine recombinase XerD [Brucella abortus bv. 5 str. B3196] Length = 309 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 91/302 (30%), Positives = 133/302 (44%), Gaps = 38/302 (12%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +N+L+ + ERG ++ TL+SY D LA +T IR + Sbjct: 10 ENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAET------GHIRMTLDTM 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q S R LS ++ F ++L + + KK LP+ ++ + L+ Sbjct: 64 AAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILYAPKKQKPLPKIMSVENVGKLL 123 Query: 139 DNVLLHTSHET---KWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 D L + + I A R A+L LY GLR+SE + L D L ++GKG Sbjct: 124 DRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKG 183 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----------- 243 K R+VPL R A+ ++ L L LP G NP +F Sbjct: 184 SKDRMVPLSRKARDALQKF-------LTLRDSLP------GSDDNPWLFPAFSESGHLAR 230 Query: 244 QRYIRQLRRYLGLPLSTT----AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 Q + R+L+ H LRH+FA+HLL NG DLR++Q +LGH +STTQIYT Sbjct: 231 QVFARELKGLAARAGLAASSASPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYT 290 Query: 300 NV 301 +V Sbjct: 291 HV 292 >gi|312977299|ref|ZP_07789047.1| integrase/recombinase XerC [Lactobacillus crispatus CTV-05] gi|310895730|gb|EFQ44796.1| integrase/recombinase XerC [Lactobacillus crispatus CTV-05] Length = 270 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 115/233 (49%), Gaps = 6/233 (2%) Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 +I+ ++ +K+ S R +S + SF +L +RK+ + + LP+ Sbjct: 24 DIQVYLQHLAERKLARSSQLRKMSSLHSFYHFLTRRKLVAIDPTQGITLRRGEKKLPQFF 83 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 + + + D++ K + RN A+ L Y G+R+SE +LT + D T+ Sbjct: 84 YQPELKQVFDSL-----KGNKPLTMRNLAMFELFYATGMRVSEVSNLTLNQLDLDLQTIL 138 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 + GKG+K R V +K+++ Y + P L + + +F +G + + ++ Sbjct: 139 VHGKGNKDRYVAFDDKTKKSLIAYLENARPLLLKNDDEQHVFLNNQGTGITSRGIETVMQ 198 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + G+ H LRHSFAT +L+NG DLRS+Q +LGH LS TQIYT+V Sbjct: 199 KTFNQAGISGKVHPHELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHV 251 >gi|53715486|ref|YP_101478.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|60683459|ref|YP_213603.1| putative site-specific recombinase [Bacteroides fragilis NCTC 9343] gi|265767527|ref|ZP_06095193.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_16] gi|52218351|dbj|BAD50944.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|60494893|emb|CAH09700.1| putative site-specific recombinase [Bacteroides fragilis NCTC 9343] gi|263252832|gb|EEZ24344.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_16] gi|301164943|emb|CBW24504.1| putative site-specific recombinase [Bacteroides fragilis 638R] Length = 293 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 78/300 (26%), Positives = 144/300 (48%), Gaps = 13/300 (4%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L L ER S+ T+ +Y D Q L + +E++ ++ +R +I Sbjct: 5 SFLDYLRYERNYSEKTVLAYGEDISQ----LREFAQERMEKFDPAEVKPELVREWIVSLM 60 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q S+ R LS ++SF KYL ++ + + + K LP L E + L+D Sbjct: 61 DQGYTSTSVNRKLSSLRSFYKYLLRQGEVSVDPLRKITGPKNKKPLPSFLKESEMNKLLD 120 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + T + R+ I+ + Y G+R+SE + L +++ S L++ GK +K R+ Sbjct: 121 D----TDFGEGFKGCRDRLIIEMFYATGMRLSELIGLDDKDVDFSASLLKVTGKRNKQRL 176 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 +P +++ +LEY D+ ++ R + V+ R L + + L Sbjct: 177 IPFGDELKETMLEYVDIRNEMISGRSDAFFVRENGERLYKNLVYNLVKRNLSKVVTLK-K 235 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H LRH+FAT +L+N +L +++ +LGH L+TT+IYT+ + + ++Y Q HP Sbjct: 236 RSPHVLRHTFATTMLNNDAELGAVKELLGHSSLATTEIYTHTTFEE----LKKVYKQAHP 291 >gi|312871428|ref|ZP_07731523.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF 3008A-a] gi|311093081|gb|EFQ51430.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF 3008A-a] Length = 307 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 90/311 (28%), Positives = 149/311 (47%), Gaps = 22/311 (7%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 + LK N+L+N ER S T ++Y D + F+ E I I+ LS +I Sbjct: 6 DFLKLYYNYLKN---ERNYSINTCKAYMDDLSEAR---TFFVENGGFIDWIK-LSSRDIE 58 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALN 130 FI +K + R +S ++SF ++L KR I ++++R K LP L Sbjct: 59 IFIQYLAQKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGDHKK--LPEFLY 116 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 + + ++ ++ T + RN A+L L Y G+R+SE +L + I + + + + Sbjct: 117 NDEMVKVLKSI-----STTTPLGLRNMALLELFYATGMRVSEIANLKLEQIDFELNLILV 171 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIR 248 GKG+K R V + A+ Y L L+ +F G + + I+ Sbjct: 172 HGKGNKDRYVAFGEEAKTALNNYLVEARKKLLLHKTDYGYVFLNSNGNRITSRGLEYIIK 231 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 + G+ S H LRH+FAT +L+NG DLR++Q +LGH +STTQIYT+V ++ Sbjct: 232 NIFLNAGISASVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQH--- 288 Query: 309 WMMEIYDQTHP 319 + +IY + P Sbjct: 289 -LCDIYHKYFP 298 >gi|255534430|ref|YP_003094801.1| Integrase, site-specific recombinase [Flavobacteriaceae bacterium 3519-10] gi|255340626|gb|ACU06739.1| Integrase, site-specific recombinase [Flavobacteriaceae bacterium 3519-10] Length = 296 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 88/316 (27%), Positives = 146/316 (46%), Gaps = 37/316 (11%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE-----IRAFI 75 +L+ + +E+ S TL SY D F +FL ++T +Y E IR F+ Sbjct: 5 FLEYIAVEKRYSPHTLTSYRRDLEDFSVFL---------LRTEAHHNYVEVDKKIIRNFM 55 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQ 133 + + I RS+ R LS ++SF +L K S + N++ LK +P + +E Sbjct: 56 AALGEKAIAKRSINRKLSTLRSFYLFLLKIGEVKTSPLANIQTLKFYAEKQVPFSPDEMN 115 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L + L T + I+ LY G+R +E L ++ + L+I GK Sbjct: 116 DLQKEEFQPLKT-------NFLKELIIETLYQTGMRRAELTGLLLDHVDLGKKELKITGK 168 Query: 194 GDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 G+K RIVP+ + + +Y + P Q+ F +GK LN + Sbjct: 169 GNKQRIVPVSDDLCAQLEQYLEFRKPLK---EYQMYFFVSAKGKKLNDKFVYSAVNT--- 222 Query: 253 YLGLPLST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 YL L S + H LRHSFATH+L G ++ ++ ++GH L++TQ+YT N + Sbjct: 223 YLSLVTSKKKKSPHILRHSFATHVLEEGAEISKVKLLMGHKSLASTQVYTGTNI----EQ 278 Query: 310 MMEIYDQTHPSITQKD 325 + ++++ HP QK+ Sbjct: 279 LKKVFNNAHPRAIQKE 294 >gi|254696281|ref|ZP_05158109.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 2 str. 86/8/59] Length = 307 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 91/302 (30%), Positives = 133/302 (44%), Gaps = 38/302 (12%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +N+L+ + ERG ++ TL+SY D LA +T IR + Sbjct: 8 ENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAET------GHIRMTLDTM 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q S R LS ++ F ++L + + KK LP+ ++ + L+ Sbjct: 62 AAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILYAPKKQKPLPKIMSVENVGKLL 121 Query: 139 DNVLLHTSHET---KWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 D L + + I A R A+L LY GLR+SE + L D L ++GKG Sbjct: 122 DRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKG 181 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----------- 243 K R+VPL R A+ ++ L L LP G NP +F Sbjct: 182 SKDRMVPLSRKARDALQKF-------LTLRDSLP------GSDDNPWLFPTFSESGHLAR 228 Query: 244 QRYIRQLRRYLGLPLSTT----AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 Q + R+L+ H LRH+FA+HLL NG DLR++Q +LGH +STTQIYT Sbjct: 229 QVFARELKGLAARAGLAASSASPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYT 288 Query: 300 NV 301 +V Sbjct: 289 HV 290 >gi|62290876|ref|YP_222669.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 1 str. 9-941] gi|82700788|ref|YP_415362.1| site-specific tyrosine recombinase XerD [Brucella melitensis biovar Abortus 2308] gi|189025091|ref|YP_001935859.1| site-specific tyrosine recombinase XerD [Brucella abortus S19] gi|254690165|ref|ZP_05153419.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 6 str. 870] gi|254694656|ref|ZP_05156484.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 3 str. Tulya] gi|254731198|ref|ZP_05189776.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 4 str. 292] gi|256258419|ref|ZP_05463955.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 9 str. C68] gi|261214980|ref|ZP_05929261.1| integrase/recombinase xerD [Brucella abortus bv. 3 str. Tulya] gi|62197008|gb|AAX75308.1| XerD, integrase/recombinase [Brucella abortus bv. 1 str. 9-941] gi|82616889|emb|CAJ11988.1| Phage integrase:Phage integrase, N-terminal SAM-like [Brucella melitensis biovar Abortus 2308] gi|189020663|gb|ACD73385.1| Phage integrase [Brucella abortus S19] gi|260916587|gb|EEX83448.1| integrase/recombinase xerD [Brucella abortus bv. 3 str. Tulya] Length = 307 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 91/302 (30%), Positives = 133/302 (44%), Gaps = 38/302 (12%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +N+L+ + ERG ++ TL+SY D LA +T IR + Sbjct: 8 ENFLEMMSAERGAAQNTLESYRRDLEAAAEELAAKGVNLAEAET------GHIRMTLDTM 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q S R LS ++ F ++L + + KK LP+ ++ + L+ Sbjct: 62 AAQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILYAPKKQKPLPKIMSVENVGKLL 121 Query: 139 DNVLLHTSHET---KWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 D L + + I A R A+L LY GLR+SE + L D L ++GKG Sbjct: 122 DRAALEANEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKG 181 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----------- 243 K R+VPL R A+ ++ L L LP G NP +F Sbjct: 182 SKDRMVPLSRKARDALQKF-------LTLRDSLP------GSDDNPWLFPAFSESGHLAR 228 Query: 244 QRYIRQLRRYLGLPLSTT----AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 Q + R+L+ H LRH+FA+HLL NG DLR++Q +LGH +STTQIYT Sbjct: 229 QVFARELKGLAARAGLAASSASPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYT 288 Query: 300 NV 301 +V Sbjct: 289 HV 290 >gi|169828358|ref|YP_001698516.1| site-specific tyrosine recombinase XerC [Lysinibacillus sphaericus C3-41] gi|168992846|gb|ACA40386.1| Tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41] Length = 320 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 85/320 (26%), Positives = 151/320 (47%), Gaps = 33/320 (10%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE---- 56 M+ LP+I+ +++L L +G S+ T + YE D F F E+ Sbjct: 1 MQKTKLPKIM--------KDFLVYLTTIKGKSQRTRKEYEYDLSLFFRFHTAVQEDLNIE 52 Query: 57 --------KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS--LSGIKSFLKYLK-KR 105 I+I+ IR+++ ++ F+ Q+ G+ + R+ ++ +KSF KYLK KR Sbjct: 53 NLAAIDIATISIEEIREITLEDLYYFMEYCEVQR-GNSAASRARKVATLKSFFKYLKGKR 111 Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165 ++ E+ + + K P +N ++A +D + ++ + RN ++ Sbjct: 112 RLIEENPAEELESPKIGRKRPIYMNFREATQFIDGIPVNQA------SPRNYCMMMFFLN 165 Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225 G+R++E L +I L + GKG+K R V L S +A+ +Y + N Sbjct: 166 LGIRVTELCQLNITSIQGRH--LTVVGKGNKERTVYLNDSCMQALADYENSGKTPYKGNG 223 Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQ 284 PLF +G + ++++ + GL T H LRH+ AT + G D+RS+Q Sbjct: 224 DEPLFVSQKGTRFTRQTVAKIVKRINQQSGLQKERLTPHKLRHTSATMMYKAGADIRSLQ 283 Query: 285 SILGHFRLSTTQIYTNVNSK 304 ILGH ++TTQIYT++ + Sbjct: 284 HILGHSSVATTQIYTHIEDE 303 >gi|241761139|ref|ZP_04759228.1| integrase family protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374758|gb|EER64219.1| integrase family protein [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 307 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 122/238 (51%), Gaps = 15/238 (6%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 ++ R + +K F ++L + + T+ ++ + S +LP+ L + L V L Sbjct: 75 TVARKSAALKHFYRFLLEEGMRTDDPSSSLPHAGISRNLPKILTTAEVERLF--VTLQQR 132 Query: 147 HETKWIDA--RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 +E + R A++ LLYG GLR SE +SL Q + Q L ++GKG + R+VP+ Sbjct: 133 YERAATPSTLRLMALVELLYGSGLRASELVSLPKQAFIRKQPFLILKGKGGRERLVPISD 192 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS-TTAH 263 A+ + P L LF +G ++Q I++L LP + H Sbjct: 193 RATDAVAAWLVHVP-----EKSLWLFPSGKGHISRIRLYQ-LIKELAVEADLPRERVSPH 246 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321 LRH+FATHLL G DLR +Q +LGH +STTQIYT+V+S+ ++E+ + HP + Sbjct: 247 VLRHAFATHLLEGGADLRVLQLLLGHADISTTQIYTHVDSQK----LVELVNSRHPLV 300 >gi|312875471|ref|ZP_07735474.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF 2053A-b] gi|325912823|ref|ZP_08175201.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 60-B] gi|311088982|gb|EFQ47423.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF 2053A-b] gi|325477816|gb|EGC80950.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 60-B] Length = 307 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 93/321 (28%), Positives = 152/321 (47%), Gaps = 42/321 (13%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 + LK N+L+N ER S T ++Y D + F+ E I I+ LS +I Sbjct: 6 DFLKLYYNYLKN---ERNYSINTCKAYMDDLSEAR---TFFVENGGFIDWIK-LSSRDIE 58 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALN 130 FI +K + R +S ++SF ++L KR I ++++R K LP L Sbjct: 59 IFIQYLAQKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGDHKK--LPEFLY 116 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 + + ++ ++ T + RN A+L L Y G+R+SE +L + I + + + + Sbjct: 117 NDEMVKVLKSI-----STTTPLGLRNMALLELFYATGMRVSEIANLKLEQIDFELNLILV 171 Query: 191 QGKGDKIRIVP------------LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238 GKG+K R V L+ + +K +L D LN N RG+ Sbjct: 172 HGKGNKDRYVAFGEEAKTALNNYLVEARKKILLHKTDYGYVFLNSNGNRITSRGL----- 226 Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + I+ + G+ S H LRH+FAT +L+NG DLR++Q +LGH +STTQIY Sbjct: 227 -----EYIIKNIFLNAGVSASVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIY 281 Query: 299 TNVNSKNGGDWMMEIYDQTHP 319 T+V ++ + +IY + P Sbjct: 282 THVTKQH----LCDIYHKYFP 298 >gi|225077168|ref|ZP_03720367.1| hypothetical protein NEIFLAOT_02223 [Neisseria flavescens NRL30031/H210] gi|224951516|gb|EEG32725.1| hypothetical protein NEIFLAOT_02223 [Neisseria flavescens NRL30031/H210] Length = 292 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 82/283 (28%), Positives = 138/283 (48%), Gaps = 20/283 (7%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ--TIRQLSYTEIRAFISKRR 79 L++L ++ LS TLQSY D + LA ++ ++ + Y E S+ Sbjct: 11 LESLWLQDRLSHNTLQSYRRDLVKVAARLAEGGQDWLSADEFALSDAVYAEGEKSTSQ-- 68 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 R+LS K +L++ ++ ++ K LP + E Q L+ Sbjct: 69 ---------ARALSACKRMYVWLEETGQRADNPTRFLKAPKSERKLPTLITEAQIDALLA 119 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + T H R+ A+L ++Y GLR++EA+ LT +I + ++R GKGDK+R+ Sbjct: 120 APDVETPH-----GLRDKALLEVMYATGLRVTEAVKLTLSDIDLHRGSIRTIGKGDKLRL 174 Query: 200 VPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VPL + Y + P L I +F + ++ + +++ G+ Sbjct: 175 VPLGQEAAYWVERYCNESRPLLLKNKICDEVFVSQKRSGISRQLAWMIVKEYAEAAGIA- 233 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 S + H LRH+FATHL+++G DLRS+Q +LGH ++TTQIYT+V Sbjct: 234 SLSPHGLRHAFATHLVNHGVDLRSVQMMLGHSDINTTQIYTHV 276 >gi|154150265|ref|YP_001403883.1| phage integrase family protein [Candidatus Methanoregula boonei 6A8] gi|153998817|gb|ABS55240.1| phage integrase family protein [Methanoregula boonei 6A8] Length = 306 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 86/323 (26%), Positives = 145/323 (44%), Gaps = 48/323 (14%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQF--LIFLAFYTEEKITIQTIRQLS--- 67 + LK +N+L+ R S TL SYE R F ++L +TE + + L Sbjct: 8 DWLKSYRNYLR----MRNYSSRTLDSYEQVIRHFGYYVWLRRHTEVTKLVFFWKDLENAR 63 Query: 68 -----------YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116 T+ +F+S RT K ++ R +S + SF ++L + + + + Sbjct: 64 LDTSVDVPPSMITDFLSFVSTMRTYK--PKTFHRIISTLSSFYRFLSVQGAVVANPLAGI 121 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 + + L Q L L+D++ D R+ I+ +Y G+R+SE ++ Sbjct: 122 ERPRIKQQEVKYLKHNQVLRLIDSIE----------DPRDKLIVRTIYSTGVRVSELCNM 171 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 ++I D+ T+RI+GKGDKIRIV + I ++ + I PLF G +GK Sbjct: 172 NVEDIDFDEHTIRIRGKGDKIRIVFVDDETLAGIQKF-------VGNRIAGPLFIGQQGK 224 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 ++P Q + P T H +RHS+A+ L +LR +Q LGH + TT+ Sbjct: 225 HISPRAIQHIFKHY-----APAGITPHKIRHSYASELYRRSKNLRVVQENLGHTSIKTTE 279 Query: 297 IYTNVNSKNGGDWMMEIYDQTHP 319 +Y + + D ++Y Q P Sbjct: 280 VYLHTDI----DERRQVYQQFFP 298 >gi|126462249|ref|YP_001043363.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029] gi|126103913|gb|ABN76591.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029] Length = 311 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 77/279 (27%), Positives = 128/279 (45%), Gaps = 30/279 (10%) Query: 38 SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97 +Y D + + +L +E+ +T + + A+++ Q + + R LS I+ Sbjct: 30 AYGRDLKDYATWLGRRSEDFLTA------TRDTVEAYLTFCEAQGLSSATRARRLSSIRQ 83 Query: 98 FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157 ++ + ++ + + +S LP+ L ++ L++ I RN Sbjct: 84 LYRFAHEEGWRADNPAIRISGPGRSKRLPKTLEIEEVDWLLEAARDKGRRAEDQI--RNR 141 Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 +L LLY G+R+SE + L + ++GKG K R+VPL P +A+ ++ Sbjct: 142 CLLELLYATGMRVSEMVGLPVAAARGSPRMILVRGKGGKERMVPLSPPACEALADW---- 197 Query: 218 PFDLNLNIQLPLFRGIRGKP----LNPG----------VFQRYIRQLRRYLGL-PLSTTA 262 L G+P L PG F ++Q+ G+ P T Sbjct: 198 ---LRARDAAEAQGQKAGRPASRFLFPGSGAAGHLTREYFYVLVKQIAVLAGVDPAKVTP 254 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 HTLRH+FATHLL+ G DLR IQ++LGH LSTT+IYT+V Sbjct: 255 HTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHV 293 >gi|325266806|ref|ZP_08133478.1| tyrosine recombinase XerD [Kingella denitrificans ATCC 33394] gi|324981738|gb|EGC17378.1| tyrosine recombinase XerD [Kingella denitrificans ATCC 33394] Length = 289 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 90/310 (29%), Positives = 152/310 (49%), Gaps = 40/310 (12%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L++L ++ L+ TL++Y D + LA + RQL+ + A + T Sbjct: 7 FLEHLWLQERLAHNTLEAYRHDLHKVAERLAAAQTDWQHADN-RQLA-DAVYAADEQPST 64 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q R+LS +K + +YL + ++ +++ K SLP+ ++E Q L+ Sbjct: 65 QS-------RTLSAVKKWYQYLNDTQHRHDNPSRDLKAAKIPRSLPQPVSEAQIDALLAA 117 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 T H R+ A+L L+Y GLR+SEA+ L+ + + + GKG+K RIV Sbjct: 118 PDTDTLHGL-----RDKALLELMYATGLRVSEAVKLSLNELDLTRGMVNTIGKGNKQRIV 172 Query: 201 PLLPSVRKAILEYY-----------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 PL V LE Y C + ++ + R + + V +Y +Q Sbjct: 173 PL-GEVAADWLERYLHTARPELLKGQACAYVFVSQKKVGISRQLAWQ-----VVAKYAQQ 226 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 + GLP + + H LRH+FATHL+++G DLR +Q +LGH L+TT+IYT+V + Sbjct: 227 V----GLP-ALSPHGLRHAFATHLVNHGADLRVVQLLLGHESLTTTEIYTHVANAR---- 277 Query: 310 MMEIYDQTHP 319 + ++ +Q HP Sbjct: 278 LKQVVEQYHP 287 >gi|213622284|ref|ZP_03375067.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 234 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 118/239 (49%), Gaps = 12/239 (5%) Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + +G SL LS ++SF +L + + + K LP+ ++ L+D Sbjct: 2 KGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDI 61 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 L + R+ A+L ++YG GLR+SE + L +++ D + + GKG K R + Sbjct: 62 DL------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRL 115 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 P+ + I + DL L + + LF GK ++ Q+ + GL Sbjct: 116 PIGRNAVTWIEHWLDLR--GLFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHV 173 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHSFATH+L + GDLR +Q +LGH LSTTQIYT+++ ++ + +YD HP Sbjct: 174 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHP 228 >gi|284992378|ref|YP_003410932.1| integrase family protein [Geodermatophilus obscurus DSM 43160] gi|284065623|gb|ADB76561.1| integrase family protein [Geodermatophilus obscurus DSM 43160] Length = 311 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 89/325 (27%), Positives = 151/325 (46%), Gaps = 38/325 (11%) Query: 6 LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65 LP +++ L + ++L +R LS+ T++ Y D L L ++ Sbjct: 12 LPPVLAEAL----AGYEEHLRTQRDLSEHTVRGYVGDAVWLLDHLVRRGGTRVD-----D 62 Query: 66 LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 L +R+++++ RT+ G + R + +SF +L++ +T E L + + K +L Sbjct: 63 LDLATLRSWLAQGRTRGAGRATTARRAAAARSFTGWLRRAGLTAEDVGLRLVSPKAQRTL 122 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 P L QA +V++ + + + R++ +L LLY G+R+SE + L ++ + Sbjct: 123 PDVLAPDQARVVVES----AAGAEEPVGLRDAVVLELLYASGIRVSELVGLDVDDVDRGR 178 Query: 186 STLRIQGKGDKIRIVPL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 LR+ GKG K R VP +P+ R D L P R P + Sbjct: 179 RLLRVLGKGRKERSVPYGVPAERA----------LDAWLTRGRPALATERSGPALLLGLR 228 Query: 245 RY---IRQLRRYLGLPLSTTA-------HTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 R++RR + ++ H LRHS ATH+L G DLRS+Q +LGH L+T Sbjct: 229 GGRLDAREVRRTVHAAVAAAPGAPDIGPHGLRHSAATHVLEGGADLRSVQELLGHASLAT 288 Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHP 319 TQIYT+V + + ++ Q HP Sbjct: 289 TQIYTHVTVER----LRAVHAQAHP 309 >gi|119719024|ref|YP_919519.1| phage integrase family protein [Thermofilum pendens Hrk 5] gi|119524144|gb|ABL77516.1| phage integrase family protein [Thermofilum pendens Hrk 5] Length = 295 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 77/276 (27%), Positives = 135/276 (48%), Gaps = 30/276 (10%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 + R S+ T++S++ +F+ FL + + Q++ ++ F++ R + Sbjct: 25 VARNRSEKTIKSFKSILEEFVRFLG--------DRHVSQVTVYDVDFFLAHLRRKGWKKD 76 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S+ + +K FL++L NI K+ LPR L ++ +V+ Sbjct: 77 SIYTAAVAVKRFLEFL-----GLGGNIAGFELPKREKRLPRYLEAEEVFRMVNAAE---- 127 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 + R+ I+ LL+ GLR+SE +SL ++ ++ TLR++GKG K R+V V Sbjct: 128 ------NLRDKLIVLLLFTTGLRVSELVSLRVSDVDLEKRTLRVRGKGSKERLVYFPDYV 181 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 + Y LN + LF + ++ +R +++L+ G+ T HTLR Sbjct: 182 ADLLRSYMK------GLNSEW-LFPSETAEHIHYTTVERVLKRLKEKAGIEKKVTPHTLR 234 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 HSFAT L+ G D+R IQ +LGH L+TTQ+Y +V+ Sbjct: 235 HSFATLSLAAGLDIREIQELLGHSNLNTTQVYAHVS 270 >gi|42523751|ref|NP_969131.1| integrase/recombinase XerD [Bdellovibrio bacteriovorus HD100] gi|39575958|emb|CAE80124.1| integrase/recombinase XerD [Bdellovibrio bacteriovorus HD100] Length = 292 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 89/302 (29%), Positives = 138/302 (45%), Gaps = 35/302 (11%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 LQN+ RG S+ T+ +Y D L Y E + T +T+ F + Sbjct: 13 LQNV---RGRSQNTVMAYRRD-------LELYLEYRKTGKTVP--------GFYEFMKKN 54 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 K+ RS R +S ++++ K+ + R + + +R K LP+ L ++ L D Sbjct: 55 KLSTRSQARVISSLRTYFKFCETRGMKC-PELRELRPPKVKVGLPKVLTPQEFQQLFDAA 113 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGKGDKIR 198 + + +T ARN L LYG G R+SE + L N++D T +++ GKG+K R Sbjct: 114 EVPDAVKT----ARNQLTLLFLYGLGCRVSELIGL---NVVDFNQTDRWIKVLGKGNKER 166 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLP 257 +VPL + + + Y L + RG +P V+ R++ G Sbjct: 167 LVPLTEKLAENLTVYLKEHRMALVKENSPSILINDRGHRPSRVDVW-RWLAAWSARAGFA 225 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 H RH AT LL +G DLRSIQ +LGH + TTQIYTNV + M + ++ Sbjct: 226 EPVNPHRFRHGCATALLESGADLRSIQMLLGHASIQTTQIYTNVTTNT----MTKTIEEH 281 Query: 318 HP 319 HP Sbjct: 282 HP 283 >gi|269965093|ref|ZP_06179258.1| tyrosine recombinase XerC [Vibrio alginolyticus 40B] gi|269830396|gb|EEZ84621.1| tyrosine recombinase XerC [Vibrio alginolyticus 40B] Length = 229 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 66/234 (28%), Positives = 122/234 (52%), Gaps = 11/234 (4%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 LS ++SF +L R + + + +K LP+ L+ + L++ +E Sbjct: 5 LSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVSQLLE------VNEDDP 58 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211 + R+ A++ L+YG GLR++E + + +++ LR+ GKGDK R VP + + Sbjct: 59 LAVRDRAMMELMYGAGLRLAELVGVDVRDVQLRSGELRVIGKGDKERKVPFSGMATEWVG 118 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 ++ + DL + LF G ++ Q+ + + + + + H LRHSFAT Sbjct: 119 KWLRVR-GDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQKQSVASHISPHKLRHSFAT 177 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325 H+L + +LR++Q +LGH +STTQIYT+++ ++ + + YDQ HP +K+ Sbjct: 178 HMLESSNNLRAVQELLGHENISTTQIYTHLDFQH----LAQAYDQAHPRARKKN 227 >gi|264677254|ref|YP_003277160.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2] gi|262207766|gb|ACY31864.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2] Length = 318 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 78/301 (25%), Positives = 140/301 (46%), Gaps = 15/301 (4%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++ L +E GLS+ TL +Y D +LA K + +++ + + R Sbjct: 30 QFIDALLLEDGLSRNTLSAYRRDLTATARWLARLQPPKALDAALE----GDLQGYFTAR- 84 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + S R L+ ++ + + + K + M K+ +P+ L ++Q L+D Sbjct: 85 VEGTKATSSNRRLTVLRRYFHWALREKRIAADPTVRMLAAKQPPRMPKTLTQEQVEALLD 144 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + + + R+ A+L L+Y GLR+SE + + + LR+ GKG K R+ Sbjct: 145 APDVDSP-----LGLRDRAMLELMYASGLRVSELVGVCMHELDLRSGVLRVTGKGRKERL 199 Query: 200 VPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VP + + Y L +F RG ++ +F +++ + G+ Sbjct: 200 VPFGQEAQHWLERYLQQARAVILGGQQTEEVFVTQRGAGMSRVMFWVIVKKCAQIAGVNS 259 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + HTLRH+FATHLL++G DLR +Q +LGH +STT IYT+V + + ++ + H Sbjct: 260 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTTIYTHVARER----LKALHAEHH 315 Query: 319 P 319 P Sbjct: 316 P 316 >gi|332982026|ref|YP_004463467.1| integrase family protein [Mahella australiensis 50-1 BON] gi|332699704|gb|AEE96645.1| integrase family protein [Mahella australiensis 50-1 BON] Length = 287 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 77/273 (28%), Positives = 142/273 (52%), Gaps = 15/273 (5%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87 ER ++ T++ Y D RQ+L F T+ + +Q + LS I ++ + + + Sbjct: 17 ERKMTSNTVECYLTDVRQYLGF----TDGQAALQNM--LSSDAIAEYMDYLKQKGCISTT 70 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 + R +S IKSF K++ ++ + ++++ K +P L+ + L+ L Sbjct: 71 MSRKISSIKSFCKFMVQKGYSDIDPSVDLQTPKMDKRVPAILSPDKVKLLLAQPNLQ--- 127 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207 E K I R+ A+L +LY G ++SE L LT +I + + ++ + GDK R++P+ V Sbjct: 128 EPKGI--RDKAMLEILYATGFKVSELLELTMDDINTEMNYVKCRS-GDKERLLPI-NRVA 183 Query: 208 KAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 L+ Y + D LN + +F G+P++ F + ++ + G+ T +TL Sbjct: 184 CQYLQNYIIQARDKLLNGKEESVVFVNCHGQPMSRQGFWKIVKYYAKKAGINQPITPYTL 243 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 RHSFA ++LS+G D++++Q +LGH +STT Y Sbjct: 244 RHSFAINMLSSGMDIKTVQQLLGHTDISTTYTY 276 >gi|126663869|ref|ZP_01734864.1| putative tyrosine recombinase [Flavobacteria bacterium BAL38] gi|126624133|gb|EAZ94826.1| putative tyrosine recombinase [Flavobacteria bacterium BAL38] Length = 580 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 86/277 (31%), Positives = 133/277 (48%), Gaps = 38/277 (13%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 S TL++Y QFL + AF E+I S EI F+ + + S Sbjct: 311 SSSTLRTYCGAFIQFLRYFAFRNPEEI--------SREEIIRFLGSLMERGLSATSGHSM 362 Query: 92 LSGIKSFLK-YLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL---VDNVLLHTSH 147 ++G++ + + L KR T + KK LP L ++ L + VDN Sbjct: 363 VNGVQFYYQQVLGKRDFT-----FVLPRPKKEKKLPVVLTMEECLLIFKVVDN------- 410 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206 ++ +L + YG GLR+SE +SL +I+ ++ + ++ KG K R+V L S+ Sbjct: 411 ------PKHKLLLLIGYGAGLRVSEIVSLKWSDILFEEHKIHVKNAKGKKDRMVMLPYSI 464 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 ++ Y +L +L +F G G+P + G Q+ +R + GL T HTL Sbjct: 465 VSSLQLYREL------YKGKLYVFEGQFAGEPYSTGSVQQVMRTALKLSGLEKKATVHTL 518 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 RHSFATHLL NG D+R IQ LGH + TT +YT++ Sbjct: 519 RHSFATHLLENGTDIRYIQQFLGHSSIKTTTVYTHLT 555 >gi|153840548|ref|ZP_01993215.1| tyrosine recombinase [Vibrio parahaemolyticus AQ3810] gi|149745789|gb|EDM56919.1| tyrosine recombinase [Vibrio parahaemolyticus AQ3810] Length = 362 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 65/182 (35%), Positives = 96/182 (52%), Gaps = 6/182 (3%) Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + LL ++ R+ A+L LLY GLR++E +SLT +NI Q +R+ GKG K R+ Sbjct: 183 DALLDAPDPNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKERL 242 Query: 200 VPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VP+ + I + P L +F R + + F I+ G+ Sbjct: 243 VPMGENAIDWIETFIQQGRPALLGETSSDVVFPSKRARQMTRQTFWHRIKYYAVIAGIDT 302 Query: 259 ST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + H LRH+FATHLL+ G DLR +Q +LGH LSTTQIYT+V ++ + +I+ Q Sbjct: 303 DQLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATER----LKQIHSQH 358 Query: 318 HP 319 HP Sbjct: 359 HP 360 >gi|299530798|ref|ZP_07044213.1| tyrosine recombinase XerD [Comamonas testosteroni S44] gi|298721314|gb|EFI62256.1| tyrosine recombinase XerD [Comamonas testosteroni S44] Length = 318 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 79/302 (26%), Positives = 146/302 (48%), Gaps = 17/302 (5%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++ L +E GLS+ TL +Y D +LA K + +++ + + R Sbjct: 30 QFIDALLLEDGLSRNTLSAYRRDLTATARWLARLQPPKALDAALE----GDLQGYFTAR- 84 Query: 80 TQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S R L+ ++ + + L++++I + + M K+ +P+ L ++Q L+ Sbjct: 85 VEGTKATSSNRRLTVLRRYFHWALREKRIAADPTV-RMLAAKQPPRMPKTLTQEQVEALL 143 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + + + R+ A+L L+Y GLR+SE + + + LR+ GKG K R Sbjct: 144 DAPDVDSP-----LGLRDRAMLELMYASGLRVSELVGVRMHELDLRSGVLRVTGKGRKER 198 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 +VP + + Y + Q +F RG ++ +F +++ + G+ Sbjct: 199 LVPFGQEAQHWLERYLQQARAAILGGQQTEEVFVTQRGAGMSRVMFWVIVKKCAQIAGIN 258 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + HTLRH+FATHLL++G DLR +Q +LGH +STT IYT+V + + ++ + Sbjct: 259 SPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTTIYTHVARER----LKALHAEH 314 Query: 318 HP 319 HP Sbjct: 315 HP 316 >gi|240103689|ref|YP_002959998.1| xerC/D integrase/recombinase protein (xerC/xerD) [Thermococcus gammatolerans EJ3] gi|239911243|gb|ACS34134.1| xerC/D integrase/recombinase protein (xerC/xerD) [Thermococcus gammatolerans EJ3] Length = 283 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 73/233 (31%), Positives = 124/233 (53%), Gaps = 18/233 (7%) Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 F+++ R + +RSL + ++++ ++ + E+ L + KS LP+AL ++ Sbjct: 51 FLARLRREGYSNRSLNLVVQALRAYFRF---EGLDEEAEKLKPPRVPKS--LPKALTQED 105 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG- 192 L+ + L R+ I+ LLYG GLR+SE +L ++I D+ + ++G Sbjct: 106 VRKLLSVIPLTRR--------RDRLIVLLLYGAGLRVSELCNLKKEDIDLDRGIITVRGG 157 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 KG K R+VP+ P++ + I Y D + + + RG + + L+P + + + Sbjct: 158 KGAKDRVVPIPPALTEEIKAYLSERDDDSEY-LLVEVRRGTKDR-LSPKTVWYLLNRYGK 215 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 G+ T H LRHSFATH+L G D+R+IQ +LGH LSTTQIYT V ++ Sbjct: 216 KAGV--KVTPHMLRHSFATHMLERGVDIRAIQELLGHSNLSTTQIYTKVTVEH 266 >gi|284799628|ref|ZP_05984435.2| tyrosine recombinase XerD [Neisseria subflava NJ9703] gi|284797559|gb|EFC52906.1| tyrosine recombinase XerD [Neisseria subflava NJ9703] Length = 292 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 82/281 (29%), Positives = 139/281 (49%), Gaps = 16/281 (5%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L++L ++ LS TLQSY R + A TE + + + ++ ++ T Sbjct: 11 LESLWLQDRLSYNTLQSYR---RDLVKVAARLTEGGQDWLSADEFALSDAVYAEGEKNT- 66 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 S R+LS K +L++ ++ ++ K LP + E Q L+ Sbjct: 67 -----SQARALSACKRMYGWLEETGQRADNPTRFLKAPKSERKLPTLITEAQIDALLAEP 121 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 + T H R+ A+L ++Y GLR++EA+ LT +I + ++R GKGDK+R+VP Sbjct: 122 DVETLH-----GLRDKALLEVMYATGLRVTEAVKLTLSDIDLHRGSIRTIGKGDKLRLVP 176 Query: 202 LLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 L + Y + P L I +F + ++ + +++ G+ S Sbjct: 177 LGQEAAYWVERYCNESRPLLLKNKICDEVFVSQKRSGISRQLAWMIVKEYAEAAGIA-SL 235 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + H LRH+FATHL+++G DLRS+Q +LGH ++TTQIYT+V Sbjct: 236 SPHGLRHAFATHLVNHGVDLRSVQMMLGHSDINTTQIYTHV 276 >gi|225175747|ref|ZP_03729740.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] gi|225168671|gb|EEG77472.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] Length = 300 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 86/293 (29%), Positives = 143/293 (48%), Gaps = 21/293 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQF--LIFLAFYTEEKITIQTIRQLSYTEIRAFI- 75 Q ++ LEIERGLS T+ Y D F L+ F+ + + + QL +R F+ Sbjct: 10 QEFVDYLEIERGLSDRTVDGYRMDIGVFARLMVREFFPQGMV----LNQLETKHVRRFLV 65 Query: 76 --SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 K R G R+ R L+ ++S+ K+L+ ++ + +RN+K + LP L + Sbjct: 66 YLKKERDNNAGTRN--RKLASLRSYFKFLEIHGYVEKNPVQQLRNVKTAKLLPVFLTIDE 123 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 + + L++ + + R+ A++ +L G R+ E +SL N+ ++ +RI GK Sbjct: 124 S-----DRLINAAKKQAKPPYRDHAMMRVLLQTGCRVEELVSLNIGNLNLEEKYMRIIGK 178 Query: 194 GDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 G+K R++PL A+ EY + P D G+R PGV Q +L Sbjct: 179 GNKERMIPLTDKTCAALAEYLEARVPKDEKEKAVFLNHLGMR--ITYPGV-QLVFNRLCE 235 Query: 253 YLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 GL T H LRH+ T L++ G DL +I+ I GH +S+T+IY +V + Sbjct: 236 EAGLNRGRLTVHKLRHTCFTMLMNAGVDLPTIKDIAGHESISSTEIYVHVTQR 288 >gi|217978007|ref|YP_002362154.1| integrase family protein [Methylocella silvestris BL2] gi|217503383|gb|ACK50792.1| integrase family protein [Methylocella silvestris BL2] Length = 314 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 90/309 (29%), Positives = 139/309 (44%), Gaps = 54/309 (17%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L + ERG +K TL++Y D + L + I + + +I A+I+ Sbjct: 14 FLDMVAAERGGAKNTLEAYARDLADYAGRLKAAKKSPI------EATGDDIGAYIASLEK 67 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + S R LS I+ ++L ++ + ++ LP+ L+ + VD Sbjct: 68 RGLKPASSARKLSAIRQLHRFLVAESYRSDDPAAIIEGPRRGRGLPKTLS----IAEVDR 123 Query: 141 VLLHTSHETKWIDA------------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 LL S E +DA R + ++ LLY GLR+SE +SL P++I + L Sbjct: 124 -LLAVSKE--GLDAAARSPGEQLRALRTACLIELLYATGLRVSELVSL-PKSIARGKDPL 179 Query: 189 -RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF---- 243 I+GKG + R+ P+ R+AI Y L L R G P +F Sbjct: 180 IPIRGKGGRDRLAPISTKAREAIAAYRAL------------LDRLAPGAASGPWLFPADS 227 Query: 244 -------QRYIRQLRRYLGLPLS----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 Q + R L+ + H LRH+FA+HLL NG DLR +Q +LGH + Sbjct: 228 ESGHLTRQAFARDLKTAAAAAGLSAARVSPHVLRHAFASHLLQNGADLRVVQELLGHADI 287 Query: 293 STTQIYTNV 301 STTQIYT+V Sbjct: 288 STTQIYTHV 296 >gi|188995443|ref|YP_001929695.1| putative site-specific recombinase [Porphyromonas gingivalis ATCC 33277] gi|188595123|dbj|BAG34098.1| putative site-specific recombinase [Porphyromonas gingivalis ATCC 33277] Length = 401 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 79/263 (30%), Positives = 125/263 (47%), Gaps = 7/263 (2%) Query: 41 CDTRQFL-IFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99 CD Q L + AF++E + + RA++ S++R LS +KSF Sbjct: 27 CDYAQDLNRYAAFFSEHTGEVFEPSERDKDVARAWLFSLMEAGQKSSSVQRRLSALKSFY 86 Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159 KY+ K + +S + +R KK LP + + ++ VL E + R+ I Sbjct: 87 KYMVKIGLIGQSPVRMLRGPKKERPLPVFVPNDE----MEKVLNKPIREDDFEAVRDRLI 142 Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219 L LY GLR SE +L + D +RI GK +K RIVP ++ I Y ++ Sbjct: 143 LETLYEVGLRRSEIATLKDNAVEDKAGCIRIIGKRNKERIVPFGKRLQDMIDNYRNIR-- 200 Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279 + + F + G+PL V + +R + + H LRHSFAT +L++G D Sbjct: 201 EEKVGKSDFFFVSLDGRPLTGEVVYKIVRTALANVPHLTKRSPHVLRHSFATEMLNHGAD 260 Query: 280 LRSIQSILGHFRLSTTQIYTNVN 302 L S++ +LGH LSTT YT+++ Sbjct: 261 LMSVKELLGHDSLSTTVQYTHIS 283 >gi|261345243|ref|ZP_05972887.1| tyrosine recombinase XerC [Providencia rustigianii DSM 4541] gi|282566940|gb|EFB72475.1| tyrosine recombinase XerC [Providencia rustigianii DSM 4541] Length = 311 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 87/314 (27%), Positives = 150/314 (47%), Gaps = 32/314 (10%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 L+ + + +L+ L +ER LS +T+ +Y RQ E K++ +QL R Sbjct: 15 LMTQVEAFLRYLRVERRLSPVTITNYR---RQLSAVCQILDELKVS--QWQQLDIAIGRN 69 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 +K R + S+ LS ++SF ++ ++ + + + K LP+ ++ Sbjct: 70 VAAKSRRTGLQAASMALRLSALRSFCDWMVEQGELPANPVKTIHAPKGKKRLPKNMD--- 126 Query: 134 ALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 VD V LL+ + R+ +L ++YG GLR+SE + L +++ + + + Sbjct: 127 ----VDEVSQLLNMDSGDPLV-VRDRTMLEVMYGAGLRLSELVGLDVKHLDLNSGEVWVM 181 Query: 192 GKGDKIRIVPLLPSVRK------AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245 GKG K R +P+ + + E YD P D + I + I + + Q Sbjct: 182 GKGSKERRIPMGKTAVNWLKRWLEMRELYD--PEDGAVFISTQSGKRISNRNVQKRFEQW 239 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 I+Q G+ H LRHSFATH+L + G+LR +Q +LGH LSTTQIYT+++ ++ Sbjct: 240 GIKQ-----GVNSHINPHKLRHSFATHILESSGNLRGVQELLGHANLSTTQIYTHLDFQH 294 Query: 306 GGDWMMEIYDQTHP 319 + +YD HP Sbjct: 295 ----LASVYDVAHP 304 >gi|268592909|ref|ZP_06127130.1| tyrosine recombinase XerC [Providencia rettgeri DSM 1131] gi|291311699|gb|EFE52152.1| tyrosine recombinase XerC [Providencia rettgeri DSM 1131] Length = 309 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 86/314 (27%), Positives = 149/314 (47%), Gaps = 32/314 (10%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 L+ + + +L L +ER LS +T+ +Y + LA + I +++ T +R Sbjct: 13 LMSQIEAFLYYLRVERRLSPVTITNYRRQLSVIVEMLAL-----LNIHEWQKVDATIVRN 67 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 +K R + S+ LS ++SF ++ ++ + + K LP+ ++ Sbjct: 68 IAAKSRKSGLQAASMALRLSSLRSFFDWMVQQGELPANPAKAIHAPKSKKRLPKNMD--- 124 Query: 134 ALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 VD V LL+ + R+ +L ++YG GLR+SE + L +++ + + + Sbjct: 125 ----VDEVSQLLNMDSGDPLV-VRDRTMLEVMYGAGLRLSELVGLDVRHLDLNTGEVWVM 179 Query: 192 GKGDKIRIVPLLPSVRK------AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245 GKG K R VP+ + + E YD P D + I + I + + Q Sbjct: 180 GKGSKERRVPMGKTAVSWLQRWLEMRELYD--PEDDAVFISTQSGKRISNRNVQKRFEQW 237 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 I+Q G+ H LRHSFATH+L + G+LR +Q +LGH LSTTQIYT+++ ++ Sbjct: 238 GIKQ-----GVNSHINPHKLRHSFATHILESSGNLRGVQELLGHANLSTTQIYTHLDFQH 292 Query: 306 GGDWMMEIYDQTHP 319 + +YD HP Sbjct: 293 ----LANVYDVAHP 302 >gi|158313594|ref|YP_001506102.1| integrase family protein [Frankia sp. EAN1pec] gi|158108999|gb|ABW11196.1| integrase family protein [Frankia sp. EAN1pec] Length = 383 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 93/316 (29%), Positives = 148/316 (46%), Gaps = 25/316 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L +++ ERGL++ ++ +Y D R++ LA I ++ + +I F + Sbjct: 27 ERYLDHVDGERGLARNSVLAYRRDLRRYREHLA-----AGGITSLAAVGEAQIAEFAAAL 81 Query: 79 RT-----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 R + S+ R L ++S ++ + +E +R LPRAL Q Sbjct: 82 REGDETHPPLAPASVARMLVAVRSLHRFAAQEGDVSEDVARPVRPPVPPRRLPRALTVDQ 141 Query: 134 ALTLVDNVLLHTSH--ETKWIDA-------RNSAILYLLYGCGLRISEALSLTPQNIMDD 184 ++ + E D R++A+L LLYG G RISEA+ L ++ D Sbjct: 142 VSAVIAAAVAGGPEYAEVSGGDPAELARRLRSAALLELLYGTGARISEAVGLDLDDLDLD 201 Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVF 243 +S +R++GKG + R+VPL A+ Y P + +F RG L+ Sbjct: 202 RSAVRLRGKGGRDRVVPLGRYAVTALERYLRRGRPHLVTECSGTAVFVSRRGNRLSRQSA 261 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 +R G+P + H LRHSFATHLL G D+R +Q +LGH +STTQIYT V Sbjct: 262 WSALRAAANAAGVP-GASPHVLRHSFATHLLDGGADVRVVQELLGHASVSTTQIYTLVTM 320 Query: 304 KNGGDWMMEIYDQTHP 319 D + E+Y +HP Sbjct: 321 ----DHLREVYASSHP 332 >gi|323137229|ref|ZP_08072308.1| integrase family protein [Methylocystis sp. ATCC 49242] gi|322397587|gb|EFY00110.1| integrase family protein [Methylocystis sp. ATCC 49242] Length = 316 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 85/304 (27%), Positives = 136/304 (44%), Gaps = 34/304 (11%) Query: 17 ERQ--NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 ERQ +L L ERG ++ T +Y D ++ FL + + +RA+ Sbjct: 6 ERQLDAFLDMLAAERGAAQNTQDAYRRDLADYIDFLRGQGTNPDDVTS------DGVRAY 59 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 ++ + + ++ R +S I+ F K+L + + + ++ S P ++ + Sbjct: 60 LASLEPRGMSAATVARRISAIRQFHKFLYVDRHRGDDPAAALEGPRRVRSAPGVMSVAEV 119 Query: 135 LTLVDNVLLHTSHETKWI-----DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 L+ E + + AR A+L LY GLR+SE +SL + Sbjct: 120 DRLLSVAREGLDDEKRPLRERLRAARLYALLETLYATGLRVSELVSLPKSAARARDPFIT 179 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-LNPG------- 241 I+GKG + R+ PL + A+ +Y L L+ P G+ P L P Sbjct: 180 IRGKGGRERLAPLTDRAKSALADYRKL------LDATAP---GLAEGPFLFPADSDSGHL 230 Query: 242 ---VFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 F R ++ L GL + H LRH+FA+HLL NG DLR +Q +LGH +STTQI Sbjct: 231 TRQAFARDLKMLGVVAGLSAAQVHPHALRHAFASHLLQNGADLRVVQELLGHADISTTQI 290 Query: 298 YTNV 301 YT+V Sbjct: 291 YTHV 294 >gi|146329464|ref|YP_001208978.1| site-specific recombinase XerC [Dichelobacter nodosus VCS1703A] gi|146232934|gb|ABQ13912.1| site-specific recombinase XerC [Dichelobacter nodosus VCS1703A] Length = 302 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 84/319 (26%), Positives = 158/319 (49%), Gaps = 36/319 (11%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L+ ERGLS T +Y Q + F+ E + Q ++++++ + Sbjct: 3 EAFLHALQYERGLSPQTCTTYRYSLNQAQRY--FHGE-------LEQQKANALQSYLNHQ 53 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLK--KRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 R ++I +L R + ++++ +LK ++++ + L + ++K +LP+ L+ + Sbjct: 54 RRKRIAPITLNRHRAALRTYFSWLKQTRQRLDNPAMALQIPKIRK-KTLPKTLSIDEI-- 110 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 +LL + + + RN A+ L Y GLR++E +++ ++ L I GKG Sbjct: 111 ---TILLAPPNSEEPLTLRNHALFELAYSAGLRLAELIAINWRDCARLPDELIITGKGGY 167 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRR 252 R + + + A+ ++ ++ I P LF +G+ ++P + YI L R Sbjct: 168 QRRIFIGTHAKMALSKW-----LNVRAQIAAPEEKALFVSNQGRRIHPRSVE-YI--LHR 219 Query: 253 YLGLPLST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 Y L T H LRHSFA H+L GD+R++Q +LGH R+STTQIYT ++ + Sbjct: 220 YAQSRLPNRHITPHMLRHSFAGHMLQACGDIRAVQDLLGHQRISTTQIYTFLDFQQ---- 275 Query: 310 MMEIYDQTHPSITQKDKKN 328 + ++YD+ HP + N Sbjct: 276 LSKVYDRAHPRAQKNHASN 294 >gi|237718760|ref|ZP_04549241.1| integrase [Bacteroides sp. 2_2_4] gi|260175400|ref|ZP_05761812.1| integrase, site-specific recombinase [Bacteroides sp. D2] gi|299144639|ref|ZP_07037707.1| tyrosine recombinase XerC [Bacteroides sp. 3_1_23] gi|315923630|ref|ZP_07919870.1| integrase [Bacteroides sp. D2] gi|229451892|gb|EEO57683.1| integrase [Bacteroides sp. 2_2_4] gi|298515130|gb|EFI39011.1| tyrosine recombinase XerC [Bacteroides sp. 3_1_23] gi|313697505|gb|EFS34340.1| integrase [Bacteroides sp. D2] Length = 293 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 77/301 (25%), Positives = 147/301 (48%), Gaps = 13/301 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L L+ ER S+ T+ +Y D +Q L + +E+ ++ IR +I Sbjct: 4 ESFLDYLQYERNYSEKTVLAYGEDIKQ----LQEFAQEEYGKFNPLEVEAELIREWIVSL 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S+ R LS +++F KYL ++ TT + ++ K LP L E + L+ Sbjct: 60 MDKGYTSTSVNRKLSSLRTFYKYLIRQGKTTIDPLRKIKGPKNKKPLPVFLKENEMNRLL 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D+ T + R+ ++ + Y G+R+SE + L +++ S L++ GK +K R Sbjct: 120 DD----TDFGEGFKGCRDRLVIEVFYATGMRLSELIGLDDKDVDFSASLLKVTGKRNKQR 175 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 ++P +R+ +LEY ++ + + R + V+ R L + L Sbjct: 176 LIPFGDELRELMLEYINVRNETIPERSEAFFIRENGERLYKNLVYNLVKRNLSKVATLK- 234 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + H LRH+FAT +L+N +L +++ +LGH ++TT+IYT+ + + ++Y Q H Sbjct: 235 KRSPHVLRHTFATTMLNNEAELGAVKELLGHESITTTEIYTHATFEE----LKKVYKQAH 290 Query: 319 P 319 P Sbjct: 291 P 291 >gi|319948060|ref|ZP_08022234.1| site-specific tyrosine recombinase XerC [Dietzia cinnamea P4] gi|319438299|gb|EFV93245.1| site-specific tyrosine recombinase XerC [Dietzia cinnamea P4] Length = 177 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 88/173 (50%), Gaps = 5/173 (2%) Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207 E + R+ ++ LLY CG+R++E L ++ ++ LR+ GKGD+ R VP Sbjct: 7 EGDPLAVRDRLVVELLYSCGIRVAELCGLDVDDVDAERRLLRVIGKGDRERAVPYGAPAD 66 Query: 208 KAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 +A+ + D P N L G RG L+P +R + ++ + H LR Sbjct: 67 RALRAWLDTGRPALTNARSGPALLLGARGGRLDPRAARRIVNEVSEATPGAPRVSPHALR 126 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HS ATHLL G DLR +Q +LGH +TTQIYT+V+++ + Y HP Sbjct: 127 HSSATHLLEGGADLRHVQELLGHSTPATTQIYTHVSAER----LRAAYRGAHP 175 >gi|218530686|ref|YP_002421502.1| tyrosine recombinase XerD [Methylobacterium chloromethanicum CM4] gi|218522989|gb|ACK83574.1| tyrosine recombinase XerD [Methylobacterium chloromethanicum CM4] Length = 328 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 87/296 (29%), Positives = 135/296 (45%), Gaps = 30/296 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +L L ERG + TL +Y D +L +LA + Q ++RA+I+ Sbjct: 17 QLFLDMLAAERGAAANTLAAYRRDLDDYLGYLAQGGIDPEEAQA------EQVRAYIASL 70 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + S R LS I+ F ++L + + +++ LP+ L+ + V Sbjct: 71 EPRGLKASSAARRLSCIRGFHRFLYAEGYSETDPTAPVAAPRRAKGLPKVLSVAE----V 126 Query: 139 DNVLLHTSHETKWIDARNS----------AILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 D LL T+ E + +L LLY GLR+SE ++L + L Sbjct: 127 DR-LLATARERVEAAGDDRAEARAAARMLCLLELLYATGLRVSELVALPRSAAATRERYL 185 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRG-IRGKPLNPGVFQRY 246 ++GKG + R+VPL R+A+ + +L + LF L F R Sbjct: 186 VVKGKGGRERLVPLTDLAREAMRTHV------AHLTAEGAWLFPAESESGHLTRQAFARD 239 Query: 247 IRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 ++ GL + H LRH+FA+HLL NG DLR +Q +LGH +STTQIYT+V Sbjct: 240 LKTAAAAAGLRTDRVSPHVLRHAFASHLLQNGADLRIVQELLGHADISTTQIYTHV 295 >gi|294789666|ref|ZP_06754899.1| tyrosine recombinase XerC [Simonsiella muelleri ATCC 29453] gi|294482378|gb|EFG30072.1| tyrosine recombinase XerC [Simonsiella muelleri ATCC 29453] Length = 302 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 123/240 (51%), Gaps = 12/240 (5%) Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 RSL R L+ + + +YL + + I +++ K LP+A++ +Q ++D + + Sbjct: 73 RSLARKLTSWRQYAEYLVHLGELSSNPIAHIKAPKPPERLPKAIDREQINQMIDQDIPQS 132 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL-P 204 + R+ A++ L YG GLR++E +L +++ D + + GKG + R VPL P Sbjct: 133 D---DVLAIRDHAMIELFYGSGLRLAELHALNVDDVLLDAGWVMVSGKGKRQRQVPLTRP 189 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 S+ A ++ Y + ++ +L LF G L + + + + H Sbjct: 190 SI--AAIDAYLSTRY--AVDGELALFTSRHGTRLCTRQIAKRLEIWSQNNQANQHISPHM 245 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 LRHS+A+HLL D+R++Q +LGH LSTTQIY ++ D + ++YD THP +K Sbjct: 246 LRHSYASHLLQASRDVRAVQELLGHQNLSTTQIYAKLDF----DHLAQVYDDTHPRAKRK 301 >gi|227547623|ref|ZP_03977672.1| tyrosine recombinase XerC [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227211878|gb|EEI79774.1| tyrosine recombinase XerC [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 355 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 82/337 (24%), Positives = 144/337 (42%), Gaps = 62/337 (18%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +++ L+ RGLS TL++Y D L E + + +++ ++R++++ Sbjct: 12 SFVSYLKSNRGLSVNTLKAYRADLTACLHLF-----ELRGVTDLNEITLDDLRSWMAVE- 65 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 ++ S+ R ++ F + + +TT + ++LP L E QA L+D Sbjct: 66 SRDHARSSMARKTVAVRGFFAWAYEHGLTTTDPAATLMTPSIPSTLPAVLTESQAEQLLD 125 Query: 140 NVLLHTSHETKWID---------------------------------------------- 153 V H ++ D Sbjct: 126 -VAEHAVATNQYKDDGGAAAASGSGKAAGKTADKSADTVNRSEAPARADKRDNARVTAES 184 Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213 RN+AIL LLY G+R++E +S+ +I T+++ GKG+K R+VP ++A+ + Sbjct: 185 QRNAAILELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGNKQRVVPFGLPAQRALETW 244 Query: 214 YD--------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + + LF G RG ++ + + + + R G+P + H L Sbjct: 245 LEQGRPVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVP-DISPHAL 303 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 RHS ATH+L G DLR +Q +LGH L TTQ YT+V+ Sbjct: 304 RHSAATHILDGGADLREVQEMLGHSSLKTTQRYTHVS 340 >gi|302865900|ref|YP_003834537.1| integrase family protein [Micromonospora aurantiaca ATCC 27029] gi|315502445|ref|YP_004081332.1| integrase family protein [Micromonospora sp. L5] gi|302568759|gb|ADL44961.1| integrase family protein [Micromonospora aurantiaca ATCC 27029] gi|315409064|gb|ADU07181.1| integrase family protein [Micromonospora sp. L5] Length = 352 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 61/157 (38%), Positives = 82/157 (52%), Gaps = 6/157 (3%) Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL-LPSVRKAILEYYDLCPFDLN 222 YG G+RISEA L ++ + +R+ GKG + R VP +P+ R D P L Sbjct: 199 YGTGVRISEACGLDVSDVDQARRVVRVLGKGGRERAVPYGVPAQRALDAWLRDGRPALLA 258 Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282 L G RG LNP +R + G+P T H LRHS ATHLL G DLR+ Sbjct: 259 PGSGRALLLGARGGRLNPTTARRIVSGWAGAAGVP-RVTPHGLRHSAATHLLEGGADLRA 317 Query: 283 IQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 +Q +LGH L++TQIYT+V+ + + Y Q HP Sbjct: 318 VQELLGHSSLASTQIYTHVSVER----LRAAYRQAHP 350 >gi|73666749|ref|YP_302765.1| Phage integrase, N-terminal SAM- like [Ehrlichia canis str. Jake] gi|72393890|gb|AAZ68167.1| Phage integrase, N-terminal SAM- like protein [Ehrlichia canis str. Jake] Length = 309 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 86/292 (29%), Positives = 154/292 (52%), Gaps = 21/292 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ + E+ +S T QSY+ D L+ L + +K + + S E++ +I Sbjct: 10 FLEAITAEKHISYNTYQSYKTD----LLGLCEFVSKKNLL--LVDTSINELQNYIRLLYE 63 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + ++ R +S IK+F +L + + L + K S SLP+AL+ ++ L+D Sbjct: 64 KGYKANTVLRKISAIKNFYGFLYRDNMIESDPTLYLDAPKLSRSLPKALSFEEISRLLDV 123 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD---DQST----LRIQGK 193 L S + + R +A++ +LY G+RISE + L ++++ D + ++I+GK Sbjct: 124 AALDGSPDGR----RLNAMVNILYSSGIRISELVCLKFYSVLEALKDHNAEIYHIKIKGK 179 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIR-GKPLNPGVFQRYIRQL 250 +K RIV L S ++I +Y ++ + + + LF G + P+ + ++ L Sbjct: 180 ANKERIVLLNLSAVESIKKYIEIYKYFVPNGFEVSQWLFPGTKFDYPITRQRVGQLLKDL 239 Query: 251 RRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G+ ++ + H LRHSFATHLL+NG ++ IQ +LGH LSTTQIYT++ Sbjct: 240 AMNAGIDITKISPHKLRHSFATHLLNNGSNIIFIQKMLGHANLSTTQIYTHI 291 >gi|327398928|ref|YP_004339797.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411] gi|327181557|gb|AEA33738.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411] Length = 279 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 76/277 (27%), Positives = 137/277 (49%), Gaps = 28/277 (10%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 RG S T+ SY D L ++ + ++K+ L + F+ + S Sbjct: 17 RGFSDNTISSYAND----LSLVSNFFKDKM-------LDDNGVGNFVLWLSQKNYKPSSF 65 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 R LS +SFLK+L K + ++ +++N K S +PR + + +++ Sbjct: 66 NRKLSSFRSFLKFLTKEGLCN-IDVSSIKNKKYSRKVPRYIPFETIKKVME--------- 115 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 D + + L+Y GLR+SE ++L +I+ D +R++GKG K R+VP+ K Sbjct: 116 ----DKKTGLFVELIYSSGLRVSELVNLRVSDIIFDAGFIRVRGKGSKERLVPVGNGTLK 171 Query: 209 AILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 + Y + ++ N + LF G+P + + I++ + G+ + H LRH Sbjct: 172 RLKSYIENARKNIKNSSNNDYLFLSSWGRPFSRQGLWKLIKRSFKKEGIDVH--PHMLRH 229 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 FATH++ NG ++R++Q +LGH ++TTQIYT++ K Sbjct: 230 MFATHMIENGANIRAVQEMLGHRSITTTQIYTDITDK 266 >gi|260752898|ref|YP_003225791.1| integrase family protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552261|gb|ACV75207.1| integrase family protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 307 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 73/236 (30%), Positives = 118/236 (50%), Gaps = 11/236 (4%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 ++ R + +K F ++L + + T+ ++ + S +LP+ L + L + Sbjct: 75 TVARKSAALKHFYRFLLEEGMRTDDPSSSLPHAGISRNLPKILTTAEVERLFVTLQQRYD 134 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 R A++ LLYG GLR SE +SL Q + Q L ++GKG + R+VP+ Sbjct: 135 RAATPSTLRLMALVELLYGSGLRASELVSLPKQAFIRKQPFLILKGKGGRERLVPISDRA 194 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS-TTAHTL 265 A+ + P L LF +G ++Q I++L LP + H L Sbjct: 195 TDAVAAWLVHVP-----EKSLWLFPSGKGHISRIRLYQ-LIKELAVEADLPRERVSPHVL 248 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321 RH+FATHLL G DLR +Q +LGH +STTQIYT+V+S+ ++E+ + HP + Sbjct: 249 RHAFATHLLEGGADLRVLQLLLGHADISTTQIYTHVDSQK----LVELVNSRHPLV 300 >gi|332981969|ref|YP_004463410.1| integrase family protein [Mahella australiensis 50-1 BON] gi|332699647|gb|AEE96588.1| integrase family protein [Mahella australiensis 50-1 BON] Length = 322 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 94/320 (29%), Positives = 162/320 (50%), Gaps = 35/320 (10%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF------YT 54 M+ N+ P+I++ L+ +L+N++ G S T++ Y D R F FL + Sbjct: 1 MQINDTPDIINDFLI-----YLENVQ---GKSPNTVKEYFYDLRTFFRFLKIRRGMVDES 52 Query: 55 EE-------KITIQTIRQLSYTEIRAFISKRRTQKIGD-RSLKRSLSGIKSFLKYL-KKR 105 E+ I + ++ + +++ A+IS QK + RS R ++ I++F KYL K Sbjct: 53 EDIRSIDIRDIDLSIVKSVQLSDLYAYISFLSNQKHNNARSRARKVASIRTFFKYLTNKA 112 Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165 K+ + + + + + K + P L+ +++ L+ +V R+ AIL L Sbjct: 113 KLLSVNPAIELESPKVGSRNPVYLSLEESRELLASV-------DGPFKERDYAILTLFLN 165 Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225 CGLR+SE + + +I +D TLR+ GKG+K R V L + AI Y P D + Sbjct: 166 CGLRLSELVGINIGDIKED--TLRVIGKGNKERTVYLNEACLNAIETYLKTRPHD-GVKD 222 Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG-DLRSI 283 + LF K ++P Q +++ GL + + H LRH+ AT + G D+R++ Sbjct: 223 REALFLSKLKKRISPKTVQYIVKKYISNAGLDSTKYSTHKLRHTAATLMYKYGDIDIRTL 282 Query: 284 QSILGHFRLSTTQIYTNVNS 303 Q +LGH +STTQIYT+V++ Sbjct: 283 QQLLGHENISTTQIYTHVDN 302 >gi|56551494|ref|YP_162333.1| integrase family protein [Zymomonas mobilis subsp. mobilis ZM4] gi|56543068|gb|AAV89222.1| integrase family protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 307 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 122/238 (51%), Gaps = 15/238 (6%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 ++ R + +K F ++L + + T+ ++ + S +LP+ L + L V L Sbjct: 75 TVARKSAALKHFYRFLLEEGMRTDDPSSSLPHAGISRNLPKILTTVEVERLF--VTLQQR 132 Query: 147 HETKWIDA--RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 +E + R A++ LLYG GLR SE +SL Q + Q L ++GKG + R+VP+ Sbjct: 133 YERAATPSTLRLIALVELLYGSGLRASELVSLPKQAFIRKQPFLILKGKGGRERLVPISD 192 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS-TTAH 263 A+ + P L LF +G ++Q I++L LP + H Sbjct: 193 RATDAVAAWLVHVP-----EKSLWLFPSGKGHISRIRLYQ-LIKELAVEADLPRERVSPH 246 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321 LRH+FATHLL G DLR +Q +LGH +STTQIYT+V+S+ ++E+ + HP + Sbjct: 247 VLRHAFATHLLEGGADLRVLQLLLGHADISTTQIYTHVDSQK----LVELVNSRHPLV 300 >gi|16127236|ref|NP_421800.1| integrase/recombinase XerD [Caulobacter crescentus CB15] gi|221236037|ref|YP_002518474.1| integrase/recombinase [Caulobacter crescentus NA1000] gi|34223000|sp|Q9A437|XERD_CAUCR RecName: Full=Tyrosine recombinase xerD gi|13424644|gb|AAK24968.1| integrase/recombinase XerD [Caulobacter crescentus CB15] gi|220965210|gb|ACL96566.1| integrase/recombinase (XerD/RipX family) [Caulobacter crescentus NA1000] Length = 305 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 84/308 (27%), Positives = 136/308 (44%), Gaps = 28/308 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ + +ER ++ TL +Y D FL+ + + I A+ Sbjct: 11 FLEMMAVERAAARNTLTAYGKDLEDARGFLSRSGHD------LHDADAETIEAYFQDLGA 64 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + + R S ++ F +++ T+ + K LP+ L + ++ Sbjct: 65 RGLSPATAARRRSAVRQFYRFVLGEGWRTDDPSRRVAAPKAGRPLPKVLERDE----IER 120 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 +L S + R + ++ L+Y GLRISE L+L + D + L ++GKG K R+ Sbjct: 121 LLAAASAKDSAQGLRLACMIELIYASGLRISELLALPLLALARDPAYLIVKGKGGKERLA 180 Query: 201 PLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 PL + R A+ Y P + L RG G+ L P R + QL + Sbjct: 181 PLNDAARAAVKAYLVERPAFLPKGQKDSPWLFPSRGATGR-LTP----RRVGQLLEDAAI 235 Query: 257 PLS-----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 + H LRH+FATHLL G DLR IQ++LGH ++TTQIYT+V G+ + Sbjct: 236 AAGIDRQKVSPHVLRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHV----AGEHLA 291 Query: 312 EIYDQTHP 319 I HP Sbjct: 292 HIVQTKHP 299 >gi|312143561|ref|YP_003995007.1| integrase family protein [Halanaerobium sp. 'sapolanicus'] gi|311904212|gb|ADQ14653.1| integrase family protein [Halanaerobium sp. 'sapolanicus'] Length = 311 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 86/323 (26%), Positives = 153/323 (47%), Gaps = 31/323 (9%) Query: 9 IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE--EKITIQTIRQL 66 I + L+ + + L++E+G SKLT++ YE D +Q +L + E+ + + +L Sbjct: 3 ISQLKFLEAVNKFKKYLDVEKGYSKLTIKEYENDLQQLYRYLKEELDFPEEFKPEDVDRL 62 Query: 67 SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126 E A K R+ R L I+SF KYL + + ++ Sbjct: 63 DIAEFLADAVIVNDNKAITRN--RKLFAIRSFYKYLLRYGVIEKNP-------------A 107 Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDA----------RNSAILYLLYGCGLRISEALSL 176 A++ + T ++ + L K+I A R+ AI L GLRISE ++L Sbjct: 108 EAIDSSKTDTKLEPIYLKLKEAQKFIAAIDDKDNINRLRDIAITKLFLYAGLRISELVNL 167 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDL-NLNIQLPLFRGIR 234 N+ + +++ GKG K R VPL V +A+ Y + + + + + +F Sbjct: 168 DFDNVDFEDGSIKFYGKGSKERYVPLHNDVTEALKRYLKERNTIKIKDQDARQAIFLSRH 227 Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 G+ ++P Q ++++ + GL + T H LRH+FA+ L D++ +Q +LGH + Sbjct: 228 GRRISPRTIQLFVKKYAKKAGLSRADKITPHKLRHTFASMLYRQTKDIKVLQDLLGHANI 287 Query: 293 STTQIYTNVNSKNGGDWMMEIYD 315 STTQIYT+V+++ + E+ D Sbjct: 288 STTQIYTHVDTEEKKSAIDEMPD 310 >gi|257867811|ref|ZP_05647464.1| site-specific recombinase [Enterococcus casseliflavus EC30] gi|257801894|gb|EEV30797.1| site-specific recombinase [Enterococcus casseliflavus EC30] Length = 182 Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 66/169 (39%), Positives = 88/169 (52%), Gaps = 9/169 (5%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 RN A+L +LYG GLR+SE SLT I + L I GKG+K R VP + A+ Y Sbjct: 17 RNQALLEVLYGSGLRVSECSSLTLGAIDWESGVLLIHGKGNKDRYVPFGSYAQAAVKRYL 76 Query: 215 DLCPFDL----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 L N ++ LF G + + + Q+ R L H LRH+FA Sbjct: 77 SSGRKQLMEKQNKEHEV-LFVNHLGDGITATGIEYVLNQIIRKSSLDSKIHPHMLRHTFA 135 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 THLL+NG D+R++Q +LGH LSTTQIY +V D + + Y Q HP Sbjct: 136 THLLNNGADMRTVQELLGHANLSTTQIYAHVTK----DSLQKNYRQFHP 180 >gi|253566649|ref|ZP_04844102.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|251944821|gb|EES85296.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] Length = 293 Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 78/300 (26%), Positives = 143/300 (47%), Gaps = 13/300 (4%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L L ER S+ T+ +Y D Q L + +E++ ++ +R +I Sbjct: 5 SFLDYLRYERNYSEKTVLAYGEDISQ----LREFAQERMEKFDPAEVKPELVREWIVSLM 60 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q S+ R LS ++SF KYL ++ + + + K LP L E + L+D Sbjct: 61 DQGYTSTSVNRKLSSLRSFYKYLLRQGEVSVDPLRKITGPKNKKPLPSFLKESEMNKLLD 120 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + T R+ I+ + Y G+R+SE + L +++ S L++ GK +K R+ Sbjct: 121 D----TDFGEGLKGCRDRLIIEMFYATGMRLSELIGLDDKDVDFSASLLKVTGKRNKQRL 176 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 +P +++ +LEY D+ ++ R + V+ R L + + L Sbjct: 177 IPFGDELKETMLEYVDIRNEMISGRSDAFFVRENGERLYKNLVYNLVKRNLSKVVTLK-K 235 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H LRH+FAT +L+N +L +++ +LGH L+TT+IYT+ + + ++Y Q HP Sbjct: 236 RSPHVLRHTFATTMLNNDAELGAVKELLGHSSLATTEIYTHTTFEE----LKKVYKQAHP 291 >gi|323499333|ref|ZP_08104310.1| super-integron integrase IntIA [Vibrio sinaloensis DSM 21326] gi|323315721|gb|EGA68755.1| super-integron integrase IntIA [Vibrio sinaloensis DSM 21326] Length = 320 Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 71/221 (32%), Positives = 100/221 (45%), Gaps = 49/221 (22%) Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 LP LN+++ V + ID R + LLYG GLR+ E + L Q++ Sbjct: 102 LPVVLNKQEMRRFVQH-----------IDPRYKLHIMLLYGSGLRVMECVRLRIQDVDFH 150 Query: 185 QSTLRI-QGKGDKIRIV-------PLLPSVRKAILEYYDL-------------------- 216 LRI QGKG K R+V PLL + L YY+ Sbjct: 151 YKALRIWQGKGGKNRVVTLADELLPLLKQQQSVALAYYNKDIHSPGYEGVHLSNSLQRKY 210 Query: 217 --CPFDLNLNIQLPLFR--------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 D N + P + G + +N QR +++ + G+ + T HTLR Sbjct: 211 PGAELDFNWHFMFPSHKLSIDPESMGWKRHHINETALQRAVKRSAQDAGIDKNVTCHTLR 270 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 HSFATHLL +G D+R++Q LGH + TTQIYT+V + GG Sbjct: 271 HSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHVIERGGG 311 >gi|256371427|ref|YP_003109251.1| integrase family protein [Acidimicrobium ferrooxidans DSM 10331] gi|256008011|gb|ACU53578.1| integrase family protein [Acidimicrobium ferrooxidans DSM 10331] Length = 332 Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 66/162 (40%), Positives = 88/162 (54%), Gaps = 17/162 (10%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLC 217 IL L Y GLR SE +L ++ L ++ GKG + R VP+ + R A+ Y L Sbjct: 180 ILELAYATGLRASELCALDRSDLGPGDRWLVVRAGKGGRTRRVPIGEAARTALRAY--LA 237 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 D + L G RG L+P QR R RYL H LRH+FATHLL +G Sbjct: 238 TRDDDAPA---LLLGARGARLSPRGLQRLTR---RYL----DVHPHQLRHAFATHLLDHG 287 Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 D+RSIQ +LGH RL+TT+IYT+V+ + + +YD THP Sbjct: 288 ADVRSIQELLGHARLATTEIYTHVSRET----LTRVYDATHP 325 >gi|34540214|ref|NP_904693.1| phage integrase family site specific recombinase [Porphyromonas gingivalis W83] gi|34396526|gb|AAQ65592.1| site-specific recombinase, phage integrase family/ribosomal subunit interface protein [Porphyromonas gingivalis W83] Length = 400 Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 79/263 (30%), Positives = 125/263 (47%), Gaps = 7/263 (2%) Query: 41 CDTRQFL-IFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99 CD Q L + AF++E + + RA++ S++R LS +KSF Sbjct: 27 CDYAQDLNRYAAFFSEHTGEVFEPSERDKDVARAWLFSLMEAGQKSSSVQRRLSALKSFY 86 Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159 KY+ K + +S + +R KK LP + + ++ VL E + R+ I Sbjct: 87 KYMVKIGLIGQSPVRMLRGPKKERPLPVFVPNNE----MEKVLNKPIREDDFEAVRDRLI 142 Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219 L LY GLR SE +L + D +RI GK +K RIVP ++ I Y ++ Sbjct: 143 LETLYEVGLRRSEIATLKDSAVEDKAGCIRIIGKRNKERIVPFGKRLQDMIDNYRNIR-- 200 Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279 + + F + G+PL V + +R + + H LRHSFAT +L++G D Sbjct: 201 EEKVGKSDFFFVSLDGRPLTGEVVYKIVRTALANVPHLTKRSPHVLRHSFATEMLNHGAD 260 Query: 280 LRSIQSILGHFRLSTTQIYTNVN 302 L S++ +LGH LSTT YT+++ Sbjct: 261 LISVKELLGHDSLSTTVQYTHIS 283 >gi|163851935|ref|YP_001639978.1| tyrosine recombinase XerD [Methylobacterium extorquens PA1] gi|163663540|gb|ABY30907.1| tyrosine recombinase XerD [Methylobacterium extorquens PA1] Length = 328 Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 85/294 (28%), Positives = 132/294 (44%), Gaps = 26/294 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +L L ERG + TL +Y D +L +LA + Q ++RA+I+ Sbjct: 17 QLFLDMLAAERGAAANTLAAYRRDLDDYLGYLAQGGIDPEEAQA------EQVRAYIASL 70 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + S R LS I+ F ++L + +++ LP+ L+ + V Sbjct: 71 EPRGLKASSAARRLSCIRGFHRFLYAEGYAETDPTAPVAAPRRAKGLPKVLSVAE----V 126 Query: 139 DNVLLHTSHETKWIDARNS----------AILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 D LL T+ E + +L LLY GLR+SE ++L + L Sbjct: 127 DR-LLATARERVEAAGDDRAEARAAARMLCLLELLYATGLRVSELVALPRSAAATRERYL 185 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 ++GKG + R+VPL R+A+ + + + P L F R ++ Sbjct: 186 VVKGKGGRERLVPLTDLAREAMRTH--VAHLTAEGSWLFPAES--ESGHLTRQAFARDLK 241 Query: 249 QLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 GL + H LRH+FA+HLL NG DLR +Q +LGH +STTQIYT+V Sbjct: 242 TAAAAAGLRTDRVSPHVLRHAFASHLLQNGADLRIVQELLGHADISTTQIYTHV 295 >gi|281425134|ref|ZP_06256047.1| integrase/recombinase XerD [Prevotella oris F0302] gi|281400726|gb|EFB31557.1| integrase/recombinase XerD [Prevotella oris F0302] Length = 293 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 77/282 (27%), Positives = 140/282 (49%), Gaps = 11/282 (3%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L ER S+LT+++Y D R F F E ++ +++ +R ++ + Sbjct: 6 FLDYLRFERNRSELTVKNYGDDLRSFEKFFR-DLENPVSWESV---DSDVVRNWMERMMD 61 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + S+ R LS ++SF ++ RK+ + + + KK LP+ L EK+ L++ Sbjct: 62 EGNNAASINRRLSALRSFYRFALSRKLVDKDPVHGITGPKKGKPLPQFLKEKEMDRLLER 121 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 S E D R+ AI+ Y G+R+SE L + + + L++ GK +K RI+ Sbjct: 122 KCWTRSFE----DVRDRAIIMTFYETGIRLSELTGLDDKMVDFAEYQLKVTGKRNKQRII 177 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG-VFQRYIRQLRRYLGLPLS 259 P + + +Y + +++ + LF G+ ++ V +R R L + L Sbjct: 178 PFGEELCTTLRDYMECRDREVD-RLSEALFVTDEGQRMSASLVRERVKRSLSKVCTLN-K 235 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + H LRH+FAT +L++ + S++ +LGH LSTT+IYT+ Sbjct: 236 RSPHVLRHTFATAMLNHKAGIESVKKLLGHESLSTTEIYTHT 277 >gi|309805721|ref|ZP_07699761.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV 09V1-c] gi|308164974|gb|EFO67217.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV 09V1-c] Length = 300 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 88/304 (28%), Positives = 146/304 (48%), Gaps = 22/304 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 N+L+N ER S T ++Y D + F+ E I I+ LS +I FI Sbjct: 6 NYLKN---ERNYSINTCKAYMDDLSEAR---TFFVENGGFIDWIK-LSSRDIEIFIQYLA 58 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALNEKQALTL 137 +K + R +S ++SF ++L KR I ++++R K LP L + + + Sbjct: 59 QKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGEHKK--LPEFLYNDEMVKV 116 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 + ++ T + RN A+L L Y G+R+SE +L + I + + + + GKG+K Sbjct: 117 LKSI-----STTTPLGLRNMALLELFYATGMRVSEIANLKLEQIDFELNLILVHGKGNKD 171 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 R V + A+ Y L L+ +F G + + I+ + G Sbjct: 172 RYVAFGEEAKTALNNYLVEARKKLLLHKTDYGYVFLNSNGNRITSRGLEYIIKNIFLNAG 231 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + S H LRH+FAT +L+NG DLR++Q +LGH +STTQIYT+V ++ + +IY Sbjct: 232 VSASVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQH----LCDIYH 287 Query: 316 QTHP 319 + P Sbjct: 288 KYFP 291 >gi|15891311|ref|NP_356983.1| site-specific tyrosine recombinase XerD [Agrobacterium tumefaciens str. C58] gi|34222927|sp|Q8U9U6|XERD_AGRT5 RecName: Full=Tyrosine recombinase xerD gi|15159692|gb|AAK89768.1| site-specific recombinase [Agrobacterium tumefaciens str. C58] Length = 331 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 91/323 (28%), Positives = 145/323 (44%), Gaps = 29/323 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L+ + ERG + TL SYE D FL + QT ++ A+++ Sbjct: 15 ESFLEMMSAERGAAANTLSSYEHDLADLREFLGRRGQSLTEAQT------PDLSAYLTHL 68 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q S R LS ++ F ++L + + + +K +LP+ ++ L+ Sbjct: 69 AAQGFAATSQARRLSSMRQFYRFLYSEGLRGDDPTGIIDAPRKGLALPKTMSVADVNRLL 128 Query: 139 DNVLLHTSHETKWIDAR--NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 + E AR +L LLY G+R+SE +SL + + + L I+GKG+K Sbjct: 129 GLAAQEAATEGPGQLARIRMHLLLELLYATGMRVSELVSLPVKVLRQEGRFLMIRGKGNK 188 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLN-------------IQLPLFRGIRGKP--LNPG 241 R+V LL +E Y+ L+ + P K L Sbjct: 189 DRMV-LLSRAAIEAMEKYEAGRKALSQEKSKAAASQKKTDTAESPWLFPSNSKEGHLPRQ 247 Query: 242 VFQRYIRQLRRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 VF R ++ + GL S + H LRH+FA+HLL NG DLR++Q +LGH +STTQIYT+ Sbjct: 248 VFARDLKDIAIRAGLTASAVSPHVLRHAFASHLLQNGADLRAVQELLGHSDISTTQIYTH 307 Query: 301 VNSKNGGDWMMEIYDQTHPSITQ 323 V + + E+ HP Q Sbjct: 308 VLEER----LQELVQTHHPLAKQ 326 >gi|222149986|ref|YP_002550943.1| site-specific tyrosine recombinase XerD [Agrobacterium vitis S4] gi|221736968|gb|ACM37931.1| tyrosine recombinase XerD [Agrobacterium vitis S4] Length = 332 Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 99/339 (29%), Positives = 155/339 (45%), Gaps = 47/339 (13%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ + ERG + TL SYE D FLA K+++ + ++ A+++ Sbjct: 10 EAFLEMMSAERGAAGNTLSSYERDLEDLHGFLA---TRKVSVMAA---TSDDLSAYLADL 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S R LS ++ F K+L + + + KK LP+ L+ + V Sbjct: 64 GHRGFEASSQARRLSALRQFYKFLYAEGLRGDDPTSILDTPKKGRPLPKTLS----IADV 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLL-------YGCGLRISEALSLTPQNIMDDQST-LRI 190 D LL + +D + Y G+R+SE +SL P N++ + L I Sbjct: 120 DK-LLSLAQAEAALDGPDRLQRLRRLALLELLYATGMRVSELVSL-PANVLAQEGRFLVI 177 Query: 191 QGKGDKIRIVPLLPSVRKAI--------LEYYDLCPFDLNLNIQ----LPLFRGI----- 233 +GKG+K R+VPL S A+ +E + P + Q L GI Sbjct: 178 RGKGNKERLVPLSRSAIAAMQVYAQAKEIEQAEKPPSKKTASKQTESKLGKSSGIGFLFP 237 Query: 234 ---RGKPLNPGVFQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGH 289 R L VF R ++ L GL + + H LRH+FA+HLL NG DLR +Q +LGH Sbjct: 238 AASREGYLPRQVFARELKDLAIRAGLSGDAVSPHVLRHAFASHLLENGADLRVVQELLGH 297 Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328 +STTQIYT+V + ++I +TH + K +KN Sbjct: 298 SDISTTQIYTHVLEER-----LQILVETHHPLA-KHRKN 330 >gi|27804830|gb|AAO22873.1| integrase [Myxococcus xanthus] Length = 209 Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 63/179 (35%), Positives = 90/179 (50%), Gaps = 5/179 (2%) Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 LL E R+ A+L +LY GLR+SE L ++ L +GKG K R+VP Sbjct: 18 LLAAPDERTSTGVRDKAMLEVLYATGLRVSELCGLGINDVQLTAGYLVAKGKGAKERLVP 77 Query: 202 LLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 L + + Y + P L LF RG F + +++ G+ Sbjct: 78 LGSVAIEKVQAYLAESRPAVLGRRKSQALFVTPRGSGFTRQGFWKLLKRYALKAGILKPL 137 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H LRHSFATHL+ G DLR++Q +LGH L+TTQIYT+VN+ + +YD+ HP Sbjct: 138 SPHKLRHSFATHLVERGADLRAVQQMLGHADLATTQIYTHVNAAR----LRSVYDEFHP 192 >gi|293372135|ref|ZP_06618526.1| tyrosine recombinase XerC [Bacteroides ovatus SD CMC 3f] gi|292632927|gb|EFF51514.1| tyrosine recombinase XerC [Bacteroides ovatus SD CMC 3f] Length = 293 Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 76/301 (25%), Positives = 148/301 (49%), Gaps = 13/301 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L L+ ER S+ T+ +Y D +Q L + +E+ ++ IR +I Sbjct: 4 ESFLDYLQYERNYSEKTVLAYGEDIKQ----LQEFAQEEYGKFDPLEVEAELIREWIVSL 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S+ R LS +++F KYL ++ TT + ++ K LP L E + L+ Sbjct: 60 MDKGYTSTSVNRKLSSLRTFYKYLIRQGETTIDPLRKIKGPKNKKPLPVFLKENEMNRLL 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D+ T + R+ ++ + Y G+R+SE + L +++ S L++ GK +K R Sbjct: 120 DD----TDFGQGFKGCRDRLVIEVFYATGMRLSELIGLDDKDVDFSASLLKVTGKRNKQR 175 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 ++P +++ +LEY ++ + + R + V+ R L + + L Sbjct: 176 LIPFGDELQELMLEYINVRNETIPERSEAFFIRENGERLYKNLVYNLVKRNLSKVVTLK- 234 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + H LRH+FAT +L+N +L +++ +LGH ++TT+IYT+ + + ++Y Q H Sbjct: 235 KKSPHVLRHTFATTMLNNEAELGAVKELLGHESITTTEIYTHATFEE----LKKVYKQAH 290 Query: 319 P 319 P Sbjct: 291 P 291 >gi|13541094|ref|NP_110782.1| integrase/recombinase [Thermoplasma volcanium GSS1] gi|14324479|dbj|BAB59407.1| integrase / recombinase [Thermoplasma volcanium GSS1] Length = 283 Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 83/288 (28%), Positives = 144/288 (50%), Gaps = 33/288 (11%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +N++ + ER SK T++ Y+ +FL F+ E + R ++ +A SK Sbjct: 10 ENFVSYMVGERK-SKYTIKEYKFLVSKFLAFVGKTPAEVTPMDIERYKTFLASKAHYSKA 68 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S ++ IK F K L R +N+ ++S +P LNE++A Sbjct: 69 --------SQYLAIKAIKLFYKSLDLR------YPVNLTPPRRSMHMPVYLNEEEA---- 110 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKI 197 + LL S ++ + SA++ +L G+R+ E +L ++ + + ++ GKGDK Sbjct: 111 -SRLLSASKKS----VKYSAVISVLAYTGIRVGELCNLRIGDVDMQEGIIYVKSGKGDKD 165 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYL 254 RIV + A+ EY + ++++ P LF + +P +R +++L + Sbjct: 166 RIVVMPNECVSALKEY-----LNWRISVETPHDFLFISNKKSRYDPSTVERMVKRLSQEA 220 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 G+ T H LRH+FAT +L NGGD+R IQ ILGH ++TTQIYT+++ Sbjct: 221 GINKRVTPHVLRHTFATSVLRNGGDIRFIQQILGHSSVATTQIYTHLD 268 >gi|299065844|emb|CBJ37023.1| site-specific tyrosine recombinase [Ralstonia solanacearum CMR15] Length = 311 Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 79/306 (25%), Positives = 142/306 (46%), Gaps = 21/306 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q + L +E GL++ TL +Y D + +LA + + Q ++ + + R Sbjct: 20 QRFCDALWLEDGLARNTLDAYRRDLTLYAQWLAGRG------KALDQTEDADLSDYFAAR 73 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + +R + K F ++ + + + K+ +P+ L+E Q L+ Sbjct: 74 HEDSLASTANRRR-TVFKRFFQWALREHVVNADPTRLLPTAKQPPRVPQTLSEAQVEALI 132 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGDKI 197 + + R+ A++ L+Y GLR+SE ++L + ++ +R I GKG K Sbjct: 133 AAPDVDAP-----LGLRDRAMIELMYASGLRVSEIVALKTVEVGLNEGVVRVIGGKGGKD 187 Query: 198 RIVPLLPS----VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 R+VP +R+ + + + L LF RG + F I++ + Sbjct: 188 RLVPFGAEAGDWLRRYLQDGHKGRTALLGQRTADALFVTARGDGMTRQAFWYLIKRYAQR 247 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 + + HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V + + + Sbjct: 248 ADIHAPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARER----LRTL 303 Query: 314 YDQTHP 319 + Q HP Sbjct: 304 HAQHHP 309 >gi|213422078|ref|ZP_03355144.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 166 Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 64/168 (38%), Positives = 97/168 (57%), Gaps = 8/168 (4%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ A+L +LY GLR+SE + LT +I Q +R+ GKG+K R+VPL + Y Sbjct: 2 RDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYL 61 Query: 215 DLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFAT 271 + P+ LN ++I + LF R + + F I+ G+ + H LRH+FAT Sbjct: 62 EHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFAT 120 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Q HP Sbjct: 121 HLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQHHP 164 >gi|213691813|ref|YP_002322399.1| phage integrase family protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|254799327|sp|B7GQE1|XERC_BIFLI RecName: Full=Tyrosine recombinase xerC gi|213523274|gb|ACJ52021.1| phage integrase family protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457907|dbj|BAJ68528.1| tyrosine recombinase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 355 Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 81/337 (24%), Positives = 143/337 (42%), Gaps = 62/337 (18%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +++ L+ RGLS TL++Y D L E + + +++ ++R++++ Sbjct: 12 SFVSYLKSNRGLSANTLKAYRADLTACLHLF-----ELRGVTDLNEITLDDLRSWMAVE- 65 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 ++ S+ R ++ F + + +T + ++LP L E QA L+D Sbjct: 66 SRDHARSSMARKTVAVRGFFAWAYEHGLTATDPAATLMTPSIPSTLPAVLTESQAEQLLD 125 Query: 140 NVLLHTSHETKWID---------------------------------------------- 153 V H ++ D Sbjct: 126 -VAEHAVATNQYKDDGGAAAASGSGKAAGKTADKSADTVNRSEAPARADKRDNARVTAES 184 Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213 RN+AIL LLY G+R++E +S+ +I T+++ GKG+K R+VP ++A+ + Sbjct: 185 QRNAAILELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGNKQRVVPFGLPAQRALETW 244 Query: 214 YD--------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + + LF G RG ++ + + + + R G+P + H L Sbjct: 245 LEQGRPVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVP-DISPHAL 303 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 RHS ATH+L G DLR +Q +LGH L TTQ YT+V+ Sbjct: 304 RHSAATHILDGGADLREVQEMLGHSSLKTTQRYTHVS 340 >gi|240139059|ref|YP_002963534.1| Tyrosine recombinase xerD [Methylobacterium extorquens AM1] gi|240009031|gb|ACS40257.1| Tyrosine recombinase xerD [Methylobacterium extorquens AM1] Length = 328 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 87/301 (28%), Positives = 135/301 (44%), Gaps = 40/301 (13%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +L L ERG + TL +Y D +L +LA E I + + ++RA+I+ Sbjct: 17 QLFLDMLAAERGAAANTLAAYRRDLDDYLGYLA---EGGIDPE---EAQAEQVRAYIASL 70 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + S R LS I+ F ++L + + +++ LP+ L+ + V Sbjct: 71 EPRGLKASSAARRLSCIRGFHRFLYAEGYSETDPTAPVAAPRRAKGLPKVLSVAE----V 126 Query: 139 DNVLLHTSHETKWIDARNS----------AILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 D LL T+ E + +L LLY GLR+SE ++L + L Sbjct: 127 DR-LLATARERVEAAGDDRAEARAAARMLCLLELLYATGLRVSELVALPRSAAATRERYL 185 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYD--------LCPFDLNLNIQLPLFRGIRGKPLNP 240 ++GKG + R+VPL R+A+ + L P + L R + L Sbjct: 186 VVKGKGGRERLVPLTDLAREAMRTHVAHLTAEGSWLFPAESESGH---LTRQAFARDLKT 242 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 +R R + H LRH+FA+HLL NG DLR +Q +LGH +STTQIYT+ Sbjct: 243 AAAAADLRTDR--------VSPHVLRHAFASHLLQNGADLRIVQELLGHADISTTQIYTH 294 Query: 301 V 301 V Sbjct: 295 V 295 >gi|15610031|ref|NP_217410.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis H37Rv] gi|31794070|ref|NP_856563.1| site-specific tyrosine recombinase XerC [Mycobacterium bovis AF2122/97] gi|121638775|ref|YP_978999.1| site-specific tyrosine recombinase XerC [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662738|ref|YP_001284261.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis H37Ra] gi|148824083|ref|YP_001288837.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis F11] gi|215404868|ref|ZP_03417049.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis 02_1987] gi|215431842|ref|ZP_03429761.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis EAS054] gi|219558917|ref|ZP_03537993.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis T17] gi|224991267|ref|YP_002645956.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str. Tokyo 172] gi|253798018|ref|YP_003031019.1| integrase xerC [Mycobacterium tuberculosis KZN 1435] gi|254232988|ref|ZP_04926315.1| integrase/recombinase xerC [Mycobacterium tuberculosis C] gi|254365534|ref|ZP_04981579.1| integrase/recombinase xerC [Mycobacterium tuberculosis str. Haarlem] gi|254551966|ref|ZP_05142413.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187913|ref|ZP_05765387.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis CPHL_A] gi|260202029|ref|ZP_05769520.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis T46] gi|260206212|ref|ZP_05773703.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis K85] gi|289444449|ref|ZP_06434193.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T46] gi|289448559|ref|ZP_06438303.1| integrase xerC [Mycobacterium tuberculosis CPHL_A] gi|289553317|ref|ZP_06442527.1| integrase xerC [Mycobacterium tuberculosis KZN 605] gi|289571083|ref|ZP_06451310.1| integrase xerC [Mycobacterium tuberculosis T17] gi|289575599|ref|ZP_06455826.1| integrase xerC [Mycobacterium tuberculosis K85] gi|289746693|ref|ZP_06506071.1| tyrosine recombinase XerC [Mycobacterium tuberculosis 02_1987] gi|289755006|ref|ZP_06514384.1| tyrosine recombinase XerC [Mycobacterium tuberculosis EAS054] gi|294994010|ref|ZP_06799701.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis 210] gi|297635512|ref|ZP_06953292.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis KZN 4207] gi|297732511|ref|ZP_06961629.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis KZN R506] gi|306777182|ref|ZP_07415519.1| integrase xerC [Mycobacterium tuberculosis SUMu001] gi|306781089|ref|ZP_07419426.1| integrase xerC [Mycobacterium tuberculosis SUMu002] gi|306785729|ref|ZP_07424051.1| integrase xerC [Mycobacterium tuberculosis SUMu003] gi|306789768|ref|ZP_07428090.1| integrase xerC [Mycobacterium tuberculosis SUMu004] gi|306794582|ref|ZP_07432884.1| integrase xerC [Mycobacterium tuberculosis SUMu005] gi|306798823|ref|ZP_07437125.1| integrase xerC [Mycobacterium tuberculosis SUMu006] gi|306804671|ref|ZP_07441339.1| integrase xerC [Mycobacterium tuberculosis SUMu008] gi|306808863|ref|ZP_07445531.1| integrase xerC [Mycobacterium tuberculosis SUMu007] gi|306968962|ref|ZP_07481623.1| integrase xerC [Mycobacterium tuberculosis SUMu009] gi|306973299|ref|ZP_07485960.1| integrase xerC [Mycobacterium tuberculosis SUMu010] gi|307081007|ref|ZP_07490177.1| integrase xerC [Mycobacterium tuberculosis SUMu011] gi|307085605|ref|ZP_07494718.1| integrase xerC [Mycobacterium tuberculosis SUMu012] gi|313659843|ref|ZP_07816723.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis KZN V2475] gi|54039881|sp|P67629|XERC_MYCBO RecName: Full=Tyrosine recombinase xerC gi|54042778|sp|P67628|XERC_MYCTU RecName: Full=Tyrosine recombinase xerC gi|166918887|sp|A1KMN8|XERC_MYCBP RecName: Full=Tyrosine recombinase xerC gi|166918891|sp|A5U6P9|XERC_MYCTA RecName: Full=Tyrosine recombinase xerC gi|254799347|sp|C1AG09|XERC_MYCBT RecName: Full=Tyrosine recombinase xerC gi|3250705|emb|CAA98378.1| PROBABLE INTEGRASE/RECOMBINASE XERC [Mycobacterium tuberculosis H37Rv] gi|31619665|emb|CAD96605.1| PROBABLE INTEGRASE/RECOMBINASE XERC [Mycobacterium bovis AF2122/97] gi|121494423|emb|CAL72904.1| Probable integrase/recombinase xerC [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124602047|gb|EAY61057.1| integrase/recombinase xerC [Mycobacterium tuberculosis C] gi|134151047|gb|EBA43092.1| integrase/recombinase xerC [Mycobacterium tuberculosis str. Haarlem] gi|148506890|gb|ABQ74699.1| tyrosine recombinase [Mycobacterium tuberculosis H37Ra] gi|148722610|gb|ABR07235.1| integrase/recombinase xerC [Mycobacterium tuberculosis F11] gi|224774382|dbj|BAH27188.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str. Tokyo 172] gi|253319521|gb|ACT24124.1| integrase xerC [Mycobacterium tuberculosis KZN 1435] gi|289417368|gb|EFD14608.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T46] gi|289421517|gb|EFD18718.1| integrase xerC [Mycobacterium tuberculosis CPHL_A] gi|289437949|gb|EFD20442.1| integrase xerC [Mycobacterium tuberculosis KZN 605] gi|289540030|gb|EFD44608.1| integrase xerC [Mycobacterium tuberculosis K85] gi|289544837|gb|EFD48485.1| integrase xerC [Mycobacterium tuberculosis T17] gi|289687221|gb|EFD54709.1| tyrosine recombinase XerC [Mycobacterium tuberculosis 02_1987] gi|289695593|gb|EFD63022.1| tyrosine recombinase XerC [Mycobacterium tuberculosis EAS054] gi|308214464|gb|EFO73863.1| integrase xerC [Mycobacterium tuberculosis SUMu001] gi|308326075|gb|EFP14926.1| integrase xerC [Mycobacterium tuberculosis SUMu002] gi|308329639|gb|EFP18490.1| integrase xerC [Mycobacterium tuberculosis SUMu003] gi|308333778|gb|EFP22629.1| integrase xerC [Mycobacterium tuberculosis SUMu004] gi|308337172|gb|EFP26023.1| integrase xerC [Mycobacterium tuberculosis SUMu005] gi|308340939|gb|EFP29790.1| integrase xerC [Mycobacterium tuberculosis SUMu006] gi|308344815|gb|EFP33666.1| integrase xerC [Mycobacterium tuberculosis SUMu007] gi|308348763|gb|EFP37614.1| integrase xerC [Mycobacterium tuberculosis SUMu008] gi|308353464|gb|EFP42315.1| integrase xerC [Mycobacterium tuberculosis SUMu009] gi|308357329|gb|EFP46180.1| integrase xerC [Mycobacterium tuberculosis SUMu010] gi|308361213|gb|EFP50064.1| integrase xerC [Mycobacterium tuberculosis SUMu011] gi|308364867|gb|EFP53718.1| integrase xerC [Mycobacterium tuberculosis SUMu012] gi|323718504|gb|EGB27675.1| integrase xerC [Mycobacterium tuberculosis CDC1551A] gi|326904508|gb|EGE51441.1| integrase xerC [Mycobacterium tuberculosis W-148] gi|328457792|gb|AEB03215.1| integrase xerC [Mycobacterium tuberculosis KZN 4207] Length = 298 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 83/304 (27%), Positives = 135/304 (44%), Gaps = 28/304 (9%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L ++ G S T ++Y D R FLA ++ L+ + +R++++ Sbjct: 12 LALQCGRSVHTRRAYLGDLRSLFAFLADRGS------SLDALTLSVLRSWLAATAGAGAA 65 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 +L R S +K+F + +R + ++ K +LP L + QAL + Sbjct: 66 RTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAM-AAAES 124 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + + + R+ I+ LLY G+R+SE L +I +R+ GKG+K R VP Sbjct: 125 GAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTVPFGQ 184 Query: 205 SVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL--------G 255 A+ + D + L G RG+ L+ +RQ R + G Sbjct: 185 PAADALHAWLVDGRRALVTAESGHALLLGARGRRLD-------VRQARTAVHQTVAAVDG 237 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 P H LRHS ATHLL G DLR +Q +LGH L+TTQ+YT+V + +++ Sbjct: 238 AP-DMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVAR----LRAVHE 292 Query: 316 QTHP 319 + HP Sbjct: 293 RAHP 296 >gi|312793099|ref|YP_004026022.1| tyrosine recombinase xerd [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180239|gb|ADQ40409.1| tyrosine recombinase XerD [Caldicellulosiruptor kristjanssonii 177R1B] Length = 291 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 82/297 (27%), Positives = 141/297 (47%), Gaps = 18/297 (6%) Query: 24 NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83 +L+ + S+ T+ SY D ++++ FL + I I+ T I IS +++ K Sbjct: 10 HLQRQNRFSQNTISSYLRDAKKYIEFL-----DNIKIKLENTSQATLIAYIISMQKSGK- 63 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 + ++ R++ +K F +LK + I I + K S P+ L + LL Sbjct: 64 SNSTIARAIVSLKVFYDFLKTQNIVDIGKI-EIEPPKLEKSPPQILTRDEV-----EKLL 117 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 E R+ A+L LLY G+R+SE ++L +I + + + K + R++P+ Sbjct: 118 SCPKEDDIKGIRDKAMLELLYATGIRVSELINLNLDDINLEHGYIICKNK-KRDRVIPIG 176 Query: 204 PSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 A+ Y P+ + LF G+ + F + ++ + G+ T Sbjct: 177 SYAISAVERYLRHSRPYLAKNKDEEALFLNFNGERMTRQGFWKIVKFYAQSAGIDKEITP 236 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHSFATHL+ NG D+R++Q +LGH +STTQ Y V + + E+Y +THP Sbjct: 237 HVLRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVK----LKEVYQKTHP 289 >gi|319900908|ref|YP_004160636.1| tyrosine recombinase XerC subunit [Bacteroides helcogenes P 36-108] gi|319415939|gb|ADV43050.1| tyrosine recombinase XerC subunit [Bacteroides helcogenes P 36-108] Length = 294 Score = 99.0 bits (245), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 80/317 (25%), Positives = 147/317 (46%), Gaps = 45/317 (14%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++L L ER S+ T++ Y D ++ L + EE + T + +R +I+ Sbjct: 5 DSFLDYLLYERNYSEGTVKYYRAD----ILELQKFGEEMLGDLTPSDVDAELVREWITFL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + ++ R LS I+++ ++L +R + + + KK LP L + + L+ Sbjct: 61 MDKGCASNTVNRKLSSIRTYYRFLLQRGMVAMDPLQKIVGPKKKKPLPTFLRQGEMDRLL 120 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D++ + R+ I+ + Y G+R+SE + L +++ S +++ GK +K R Sbjct: 121 DDIDFGEGFKG----CRDRMIIEMFYATGMRLSELIGLNDKDVDFSASLIKVTGKRNKQR 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK--PLNPGVF------QRYIRQL 250 ++P FD L + + + +R + P+ F +R R + Sbjct: 177 LIP-----------------FDKELELSMRKYVNVRNEAIPIRTDAFFVRKNGRRLYRSI 219 Query: 251 RRYL---GLPLSTTA-----HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 YL L T H LRH+FAT +L+NG DL SI+ +LGH L+TT+IYT+ Sbjct: 220 VEYLVKRNLSKVVTVKKRSPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEIYTHTT 279 Query: 303 SKNGGDWMMEIYDQTHP 319 + + ++Y+Q HP Sbjct: 280 FEE----LKKVYNQAHP 292 >gi|300813238|ref|ZP_07093603.1| site-specific tyrosine recombinase XerC [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512645|gb|EFK39780.1| site-specific tyrosine recombinase XerC [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 326 Score = 99.0 bits (245), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 90/302 (29%), Positives = 149/302 (49%), Gaps = 26/302 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA-----FYTE---------EKITIQTIR 64 ++L L +G S+ T++ Y D R FL ++ FY +K+ ++ Sbjct: 8 DDFLDYLSSSKGHSENTIKEYYYDLRIFLRYMILRKTNFYDNVKSLDEVDIDKVDEDLLK 67 Query: 65 QLSYTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK-S 122 ++ +I A+IS + +K+ ++S R +S +++F YL + + N +L K Sbjct: 68 AINKQDIYAYISYLDKERKLSNKSKYRKISAVRAFFDYLTNKIDLLKINPSESVDLPKIE 127 Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 SLP LN QA+ L+ + S E + R+ I L CG+R+SE + +I Sbjct: 128 KSLPIYLNLDQAINLLKTI--ENSKENDFYRTRDYCICTLFLNCGMRLSELSQINISSIK 185 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242 D+ +R+ GKG+K R + L + +I Y P ++ + LF +R K ++ Sbjct: 186 DEM--IRVLGKGNKERQIYLNNACIYSIKNYLMHRP-KVSTD---ALFISMRKKRMSNRS 239 Query: 243 FQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTN 300 Q I + R GL P T H LRH+ AT + G D++S+Q ILGH ++TTQIYT+ Sbjct: 240 IQHMIEKHIRNSGLDPNKYTVHKLRHTAATLMYQYGNADIKSLQEILGHESITTTQIYTH 299 Query: 301 VN 302 VN Sbjct: 300 VN 301 >gi|254452706|ref|ZP_05066143.1| phage integrase [Octadecabacter antarcticus 238] gi|198267112|gb|EDY91382.1| phage integrase [Octadecabacter antarcticus 238] Length = 320 Score = 99.0 bits (245), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 71/218 (32%), Positives = 113/218 (51%), Gaps = 18/218 (8%) Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 ++++G+K L+ +R + + +LK+ +P L++K+ + +L Sbjct: 91 QTMTGVKFLLRVTLRR----HDLVAEIFHLKEPVKVPLVLSKKE----IKRILAMAPS-- 140 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRK 208 + AR +L L YGCG+R E + L +I DQ +RI Q KG K RIV L + Sbjct: 141 --LKAR--VMLSLAYGCGMRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRIVMLPVDILS 196 Query: 209 AILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + +++ P + ++ P LF RGK L+ R ++ R G+ T HTL Sbjct: 197 LLRDWWKERPTGQDKDVPAPERVLFPSYRGKHLSARQISRLFKETAREAGITKPVTLHTL 256 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 RHSFATHLL G D+R IQ++LGH +L+TT Y +V + Sbjct: 257 RHSFATHLLERGVDIRVIQALLGHSKLTTTARYASVAT 294 >gi|282881982|ref|ZP_06290623.1| tyrosine recombinase XerC [Peptoniphilus lacrimalis 315-B] gi|281298012|gb|EFA90467.1| tyrosine recombinase XerC [Peptoniphilus lacrimalis 315-B] Length = 326 Score = 99.0 bits (245), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 90/302 (29%), Positives = 149/302 (49%), Gaps = 26/302 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA-----FYTE---------EKITIQTIR 64 ++L L +G S+ T++ Y D R FL ++ FY +K+ ++ Sbjct: 8 DDFLDYLSSSKGHSENTIKEYYYDLRIFLRYMIIRKTNFYDNVKSLDGVDIDKVDEDLLK 67 Query: 65 QLSYTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK-S 122 ++ +I A+IS + +K+ ++S R +S +++F YL + + N +L K Sbjct: 68 AINKQDIYAYISYLDKERKLSNKSKYRKISAVRAFFDYLTNKIDLLKINPSESVDLPKIE 127 Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 SLP LN QA+ L+ + S E + R+ I L CG+R+SE + +I Sbjct: 128 KSLPIYLNLDQAINLLKTI--ENSKENDFYRTRDYCICTLFLNCGMRLSELSQINISSIK 185 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242 D+ +R+ GKG+K R + L + +I Y P ++ + LF +R K ++ Sbjct: 186 DEM--IRVLGKGNKERQIYLNNACIYSIKNYLMHRP-KVSTD---ALFISMRKKRMSNRS 239 Query: 243 FQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTN 300 Q I + R GL P T H LRH+ AT + G D++S+Q ILGH ++TTQIYT+ Sbjct: 240 IQHMIEKHIRNSGLDPNKYTVHKLRHTAATLMYQYGNADIKSLQEILGHESITTTQIYTH 299 Query: 301 VN 302 VN Sbjct: 300 VN 301 >gi|15842437|ref|NP_337474.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis CDC1551] gi|13882740|gb|AAK47288.1| tyrosine recombinase XerC [Mycobacterium tuberculosis CDC1551] Length = 315 Score = 99.0 bits (245), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 83/304 (27%), Positives = 135/304 (44%), Gaps = 28/304 (9%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L ++ G S T ++Y D R FLA ++ L+ + +R++++ Sbjct: 29 LALQCGRSVHTRRAYLGDLRSLFAFLADRGS------SLDALTLSVLRSWLAATAGAGAA 82 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 +L R S +K+F + +R + ++ K +LP L + QAL + Sbjct: 83 RTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAM-AAAES 141 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + + + R+ I+ LLY G+R+SE L +I +R+ GKG+K R VP Sbjct: 142 GAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTVPFGQ 201 Query: 205 SVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL--------G 255 A+ + D + L G RG+ L+ +RQ R + G Sbjct: 202 PAADALHAWLVDGRRALVTAESGHALLLGARGRRLD-------VRQARTAVHQTVAAVDG 254 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 P H LRHS ATHLL G DLR +Q +LGH L+TTQ+YT+V + +++ Sbjct: 255 AP-DMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVAR----LRAVHE 309 Query: 316 QTHP 319 + HP Sbjct: 310 RAHP 313 >gi|312127184|ref|YP_003992058.1| tyrosine recombinase xerd [Caldicellulosiruptor hydrothermalis 108] gi|311777203|gb|ADQ06689.1| tyrosine recombinase XerD [Caldicellulosiruptor hydrothermalis 108] Length = 291 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 82/297 (27%), Positives = 142/297 (47%), Gaps = 18/297 (6%) Query: 24 NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83 +L+ + S+ T+ SY D ++++ FL + I I+ T I IS +++ K Sbjct: 10 HLQRQNRFSQNTISSYLRDAKKYIEFL-----DNIKIKLENTSQATLIAYIISMQKSGK- 63 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 + ++ R++ +K F +LK + I I + K S P+ L + LL Sbjct: 64 SNSTIARAIVSLKVFYDFLKIQNIVDIGKI-EIEPPKLEKSPPQILTRDEV-----EKLL 117 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 E R+ A+L LLY G+R+SE ++L +I + + + K + R++P+ Sbjct: 118 SCPKEDDIKGIRDKAMLELLYATGIRVSELINLNLDDINLEHGYIICKNK-KRDRVIPIG 176 Query: 204 PSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 A+ +Y P+ + LF G+ + F + ++ + G+ T Sbjct: 177 SYAISAVEKYLRHSRPYLAKNKDEEALFLNFNGERMTRQGFWKIVKFYAQSAGIDKEITP 236 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHSFATHL+ NG D+R++Q +LGH +STTQ Y V + + E+Y +THP Sbjct: 237 HVLRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVK----LKEVYQKTHP 289 >gi|332882132|ref|ZP_08449766.1| putative tyrosine recombinase XerC [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679883|gb|EGJ52846.1| putative tyrosine recombinase XerC [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 293 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 81/304 (26%), Positives = 146/304 (48%), Gaps = 19/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ L +ER S T++ Y D F ++Y + T+ + + +R ++ Sbjct: 4 EAFLEYLTLERNYSLRTVEEYRDDLNAFE---SYYKKVDSTL-SWETIDGDVVRDWMVSM 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 ++ R LS +++F +YL KR + N++ KK LP L E + L+ Sbjct: 60 MEAGRTATTVNRRLSALRTFYRYLLKRDWIKVDPVRNIQGPKKKKPLPVFLKESEMDRLL 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D + ++ R+ I+ Y G+R+SE L Q++ +++ GK +K R Sbjct: 120 DGEFFGSD----FLGKRDKLIVNTFYVTGVRLSELTGLNNQDVDLWGGVIKVTGKRNKQR 175 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 IVP + +A+L Y L + +F +G+ L + +R YLG+ Sbjct: 176 IVPFGREL-EALLRTYLDEKSSLGMEDGGAMFVDEKGERLTNVKVRNLVRH---YLGMVT 231 Query: 259 ST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + H LRH+FAT +L++ DL S++ +LGH +STT+IYT+ + + E+Y+ Sbjct: 232 TQKKRSPHVLRHTFATSMLNHHADLESLKELLGHESISTTEIYTHTTFEE----LKEMYN 287 Query: 316 QTHP 319 Q HP Sbjct: 288 QAHP 291 >gi|319949186|ref|ZP_08023275.1| site-specific tyrosine recombinase XerD [Dietzia cinnamea P4] gi|319437172|gb|EFV92203.1| site-specific tyrosine recombinase XerD [Dietzia cinnamea P4] Length = 316 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 79/309 (25%), Positives = 142/309 (45%), Gaps = 15/309 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L +L +E+G S TL +Y D ++ LA + +T T + + RA ++ Sbjct: 12 REYLDHLAVEKGASAHTLAAYRRDLDRYRRHLAAVGVDDLTAVT--EAHVEDFRARLATG 69 Query: 79 RTQK----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 + + S+ R+L+ ++ ++ + +T + + LP+AL + Sbjct: 70 DPDEGRPPLAPSSVARTLAAVRGLHRFATRDGVTDTDVAAAVAPPRPPRRLPKALPLDRM 129 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM----DDQSTLRI 190 + +++ T +T R+ A+L LLY G R +E + L ++ D T+ + Sbjct: 130 IAVIEAAG-DTGVDTDPARLRDRAMLELLYATGARAAELIGLDVDDLDGLDHPDGGTVIL 188 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 +GKG K R+VP+ +A+ Y L LF RG ++ + Sbjct: 189 RGKGGKERLVPVGRPACEAVGAYLTRARPALAKRGGPALFLNTRGGRISRQTLWNVVSAA 248 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ + H+ RHSFATHLL G D+R +Q +LGH ++TTQ+YT V D + Sbjct: 249 AARAGVTQEVSPHSFRHSFATHLLDGGADIRVVQELLGHASVTTTQVYTLVTV----DTL 304 Query: 311 MEIYDQTHP 319 E++ + HP Sbjct: 305 REVWAECHP 313 >gi|89068929|ref|ZP_01156311.1| tyrosine recombinase XerD [Oceanicola granulosus HTCC2516] gi|89045510|gb|EAR51574.1| tyrosine recombinase XerD [Oceanicola granulosus HTCC2516] Length = 315 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 108/221 (48%), Gaps = 15/221 (6%) Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 R LS IK ++ + ++ + + + LP+ L+ ++ VD LL + T Sbjct: 78 RRLSAIKQLYRFAFEEGWRADNPAIRIAGPGREKRLPKTLSVEE----VDR-LLAAARTT 132 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 RN+ ++ LLY G+R+SE +SL D L ++GKG K R+VPL R A Sbjct: 133 PRDAVRNTCLVELLYATGMRVSELVSLPVAATRGDPRMLLVRGKGGKERMVPLSQGARAA 192 Query: 210 ILEYYDLCPFDLNLNIQLP------LF--RGIRGKPLNPGVFQRYIRQLRRYLGL-PLST 260 + E+ LF G G L F I+++ G+ P Sbjct: 193 VAEWLVARDAAEAAAQARGKAASRFLFPSHGKDGH-LTRHRFFTLIKEIAVLGGVSPEKV 251 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T HTLRH+FATHLL G DLRSIQ++LGH + TT+IYT+V Sbjct: 252 TPHTLRHAFATHLLEGGADLRSIQTLLGHADVGTTEIYTHV 292 >gi|78777937|ref|YP_394252.1| Phage integrase [Sulfurimonas denitrificans DSM 1251] gi|78498477|gb|ABB45017.1| Phage integrase [Sulfurimonas denitrificans DSM 1251] Length = 270 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 85/304 (27%), Positives = 148/304 (48%), Gaps = 48/304 (15%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ LE RG S LT++SY+ TE +I+ ++ ++ + + + Sbjct: 3 FLKYLEDIRGYSDLTIKSYDESI----------TEALKSIEFVQDKNHILLNLMPYRIKI 52 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + +++ + LS I+SF YL +I+ + ++K + +LP+ ++ + +++ Sbjct: 53 STLNPKTISKKLSAIRSFADYLNDNEISVM--LKGDDSIKVAKTLPKPISH---VNIIEA 107 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + L + +D R ++ L Y GLRISE SL +N+ D+ +R+ GKG K R V Sbjct: 108 INLAS------LDER--VVVTLFYTLGLRISELASLELKNVSDEW--VRVIGKGSKQRDV 157 Query: 201 PLLPSVRKAILEYYDLCP-----FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 PLL +K + EY P F+ N G+ L+ + I ++ R +G Sbjct: 158 PLLEQSKKVLDEYLSKSPHKKFVFEKN------------GEKLSENSLRYIITKVFRRVG 205 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 L +S H LRHSFA+ LL+ + + +LGH ++TTQIYT K G + Y+ Sbjct: 206 LKVS--PHQLRHSFASQLLNGNAPIADVSELLGHSSMATTQIYT----KLGSALKQQNYN 259 Query: 316 QTHP 319 HP Sbjct: 260 MAHP 263 >gi|325853546|ref|ZP_08171378.1| phage integrase, N-terminal SAM domain protein [Prevotella denticola CRIS 18C-A] gi|325484350|gb|EGC87278.1| phage integrase, N-terminal SAM domain protein [Prevotella denticola CRIS 18C-A] Length = 294 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 73/300 (24%), Positives = 141/300 (47%), Gaps = 15/300 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L +ER S +T+ SY D F F + +IT +++ +R ++ Sbjct: 7 FLDYLRLERNYSPMTVISYRKDLEAFERFCQ-ELDPQITWESV---DTDVVRDWMEDMMD 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + S+ R +S ++SF ++ + + ++ + ++ ++ LP+ L E + L+D Sbjct: 63 KGNAASSVNRRISALRSFYRFALRCGLVSKDPVHGLQGPRRQKPLPQFLKESEMEQLLDP 122 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + +E D ++ Y G+R+SE L +++ D L++ GK +K RI+ Sbjct: 123 AMWTDGYE----DVLARTLIVTFYETGIRLSELTGLDDRDVDDVTCELKVTGKRNKQRII 178 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P + + + Y C D P LFR +G+ + + +++ + Sbjct: 179 PFGKELEETLAAYR--CVRDARTGDSSPTLFRTEKGERITNAQVRALVKKNLSKVSTLKK 236 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T H LRH+FAT +L++ L S++ +LGH LSTT+IYT+ + + ++Y HP Sbjct: 237 RTPHVLRHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHTTFEQ----LKKVYKNAHP 292 >gi|126651787|ref|ZP_01723989.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905] gi|126591465|gb|EAZ85572.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905] Length = 355 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 83/302 (27%), Positives = 141/302 (46%), Gaps = 25/302 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIF------------LAFYTEEKITIQTIRQL 66 +++L L +G S+ T + YE D F F LA ITI+ IR + Sbjct: 46 KDFLVYLTTIKGKSQRTRKEYEYDLTLFFRFHTAVQEDLDIENLAVIDIATITIEEIRDI 105 Query: 67 SYTEIRAFISKRRTQKIGDRSLKRS--LSGIKSFLKYLK-KRKITTESNILNMRNLKKSN 123 + ++ F+ Q+ G+ + R+ ++ +KSF KYLK KR++ E+ + K Sbjct: 106 TLEDLYYFMEYCEVQR-GNSAASRARKVATLKSFFKYLKGKRRLIEENPAEELETPKIGR 164 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 P +N ++A +D + + + RN ++ G+R++E L +I Sbjct: 165 KRPIYMNFQEATQFIDGIPANQA------SPRNYCMMMFFLNLGIRVTELCQLNITSIQG 218 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 L + GKG+K R V L S +A+ +Y + N PLF +G Sbjct: 219 RH--LTVVGKGNKERTVYLNDSCMQALADYENSGKTPYKGNGDEPLFVSQKGTRFTRQTV 276 Query: 244 QRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + ++++ + GL T H LRH+ AT + G D+RS+Q ILGH ++TTQIYT++ Sbjct: 277 AKIVKRINQQSGLQKERLTPHKLRHTSATMMYKAGADIRSLQHILGHSSVATTQIYTHIE 336 Query: 303 SK 304 + Sbjct: 337 DE 338 >gi|259500641|ref|ZP_05743543.1| integrase/recombinase XerC [Lactobacillus iners DSM 13335] gi|302191330|ref|ZP_07267584.1| integrase/recombinase CodV [Lactobacillus iners AB-1] gi|259168025|gb|EEW52520.1| integrase/recombinase XerC [Lactobacillus iners DSM 13335] Length = 307 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 89/311 (28%), Positives = 148/311 (47%), Gaps = 22/311 (7%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 + LK N+L+N ER S T ++Y D + F+ E I ++ LS +I Sbjct: 6 DFLKLYYNYLKN---ERNYSINTCKAYMDDLSEAR---TFFVENGGFIDWLK-LSSRDIE 58 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALN 130 FI +K + R +S ++SF ++L KR I ++++R K LP L Sbjct: 59 IFIQYLAQKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGEHKK--LPEFLY 116 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 + + ++ ++ T + RN A+L L Y G+R+SE +L I + + + + Sbjct: 117 SDEMVKVLKSI-----STTTPLGLRNMALLELFYATGMRVSEISNLKLDQIDFELNLILV 171 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIR 248 GKG+K R V + A+ Y L L+ +F G + + I+ Sbjct: 172 HGKGNKDRYVAFGEEAKTALNNYLVEARKKLLLHKTDYGYVFLNSNGNRITSRGLEYIIK 231 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 + G+ S H LRH+FAT +L+NG DLR++Q +LGH +STTQIYT+V ++ Sbjct: 232 NIFLNAGVSASVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQH--- 288 Query: 309 WMMEIYDQTHP 319 + +IY + P Sbjct: 289 -LCDIYHKYFP 298 >gi|209883237|ref|YP_002287094.1| tyrosine recombinase XerD [Oligotropha carboxidovorans OM5] gi|209871433|gb|ACI91229.1| tyrosine recombinase XerD [Oligotropha carboxidovorans OM5] Length = 316 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 87/299 (29%), Positives = 131/299 (43%), Gaps = 31/299 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE--KITIQTIRQ-LSYTEIRAFISK 77 +L L E+G TL +Y D FLA + + Q +R L+ + R F S Sbjct: 13 FLDMLAAEQGAGDNTLNAYRSDLEDLSAFLAHAKTDFARADTQALRDYLADLDRRGFKSS 72 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 S+ R LS + ++L + ++ + K+ LP+ L+ L Sbjct: 73 ---------SVARRLSSTRHLFRFLLNERKRSDDPAAILAGPKRGRPLPKVLSIADVDRL 123 Query: 138 VDNVLLHTSHET----KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 + E K R +L +LY GLR+SE ++L D + ++GK Sbjct: 124 LGKAREFADQEQAPLQKLRAMRLWCLLEVLYATGLRVSELVALPLSAAKRDARMIVVRGK 183 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV----------F 243 GDK R+VPL S R+A+ Y + R K L P F Sbjct: 184 GDKERLVPLNQSSREAMTAYLAATEAAKTDKTK----SEPRSKWLFPSSGESGHLTRQHF 239 Query: 244 QRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 R +++L + P + H LRH+FA+HLL NG DLR +Q++LGH +STTQIYT+V Sbjct: 240 ARDLKELAMAAAISPRLISPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHV 298 >gi|154249762|ref|YP_001410587.1| integrase family protein [Fervidobacterium nodosum Rt17-B1] gi|154153698|gb|ABS60930.1| integrase family protein [Fervidobacterium nodosum Rt17-B1] Length = 290 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 80/308 (25%), Positives = 155/308 (50%), Gaps = 29/308 (9%) Query: 8 EIVSFE-LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI---TIQTI 63 +I+ E LL+ +++L ++ R S+ T+++Y D R+F ++ ++ + + + Sbjct: 2 DIIDIEALLRTYEDYLVHV---RRSSENTVKAYIKDIRRFFEYIQKPPKDIVRSDVEKFV 58 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 + LS EI ++ + ++ R +S +K+ YL+ + E+ +R+ + Sbjct: 59 KALSKGEITG-------GEVTETTISRYISSLKTIFDYLQLIGVVNENPTERVRHPRLRK 111 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 +P L K+ +++T E K + + I+ +LY CGLR+SE +L +++ Sbjct: 112 KIPSFLTMKEV-----KAMINTFDEEK--ELKYKTIISVLYFCGLRVSELCNLRVEDVSF 164 Query: 184 DQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242 +++ GKG+K R+VP+ S+ + +Y + + F RGK ++P Sbjct: 165 YPPYIKVVMGKGNKDRLVPISDSIIPLLEKYVERYKPKV-------YFIESRGKSIHPAT 217 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 R +++ + G+ HTLRHSFATHL+ N +++ +Q +LGH LSTT IY +V Sbjct: 218 VFRIVKRAAQRAGINKKIHPHTLRHSFATHLIMNNVNVKIVQELLGHANLSTTSIYLHVA 277 Query: 303 SKNGGDWM 310 K D + Sbjct: 278 DKEKFDAV 285 >gi|237717383|ref|ZP_04547864.1| integrase [Bacteroides sp. D1] gi|229443366|gb|EEO49157.1| integrase [Bacteroides sp. D1] Length = 292 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 77/301 (25%), Positives = 146/301 (48%), Gaps = 13/301 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L L+ ER S+ T+ +Y D +Q L + +E+ ++ IR +I Sbjct: 3 ESFLDYLQYERNYSEKTVLAYGEDIKQ----LQEFAQEEYGKFNPLEVEAELIREWIVSL 58 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S+ R LS +++F KYL ++ TT + ++ K LP L E + L+ Sbjct: 59 MDKGYTSTSVNRKLSSLRTFYKYLLRQGETTIDPLRKIKGPKNKKPLPVFLKENEMNRLL 118 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D T + R+ I+ + Y G+R+SE + L +++ S L++ GK +K R Sbjct: 119 D----ETDFGEGFKGCRDRLIIEMFYATGMRLSELIGLDNKDVDFSASLLKVTGKRNKQR 174 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 ++P +++ +LEY ++ + + R + V+ R L + L Sbjct: 175 LIPFGDELQELMLEYINVRNETIPERSEAFFIRENGERLYKNLVYNLVKRNLSKVATLK- 233 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + H LRH+FAT +L+N +L +++ +LGH ++TT+IYT+ + + ++Y Q H Sbjct: 234 KKSPHVLRHTFATTMLNNEAELGAVKELLGHESITTTEIYTHATFEE----LKKVYKQAH 289 Query: 319 P 319 P Sbjct: 290 P 290 >gi|190410733|ref|YP_001966071.1| putative integrase [Thermus sp. 4C] gi|148608607|gb|ABQ95627.1| putative integrase [Thermus sp. 4C] Length = 386 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 83/299 (27%), Positives = 138/299 (46%), Gaps = 37/299 (12%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 LE+E G S T + Y D +F ++ E ++ IRAF++ R ++ Sbjct: 92 LEMEEGRSPRTAKEYLMDAG---LFARWFRERHGRPPRFEEVGSQHIRAFLASR---EVS 145 Query: 85 DRSLKRSLSGIKSFLKYLKKR------KITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R L+ ++ +YL + K TE ++ K LP L + L+ Sbjct: 146 PHRAGRVLASLRKLFRYLAEVEGLPLLKDPTE----GVKRPKLPRRLPVYLTPPEVARLL 201 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGD 195 + S + R+ A+L LYG GLR+SEAL+LT ++ +R+QGKG Sbjct: 202 QAAYQNRSPR---VALRDWALLAFLYGTGLRLSEALALTYADLTYQDGIPHAIRVQGKGG 258 Query: 196 KIRIVPLLPSVRKAI--------LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 K R+V L P+ ++A+ LE + P+ + RGKP + + + Sbjct: 259 KERVVVLSPTAQRALHQWLKHRNLEGHPTSPYIWSHTTG-----PNRGKPFSARAVEAMV 313 Query: 248 RQLRRYLGLP--LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 +++ R GL T H LRHS+A+ L+ G + ++ +LGH +STTQ+Y +V+ K Sbjct: 314 KRVARRAGLKDWRRITPHKLRHSYASALVEAGRGIDEVKELLGHSSISTTQVYVHVSRK 372 >gi|325473780|gb|EGC76968.1| tyrosine recombinase xerC [Treponema denticola F0402] Length = 305 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 91/307 (29%), Positives = 147/307 (47%), Gaps = 35/307 (11%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 R +K T+ SY+ D +IF + E + + +L ++IR FI++ +KI S+ Sbjct: 16 RQFTKATIDSYKND---LIIFEEWLKELDLNV---FELKASDIRIFIAELADKKIAPASI 69 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 R +S ++ F KY + +T + I ++RNLK + LP + KQA L ++ Sbjct: 70 NRMMSTLRGFYKYALRFNLTKINPISSVRNLKLAQKLPVFMFPKQAQEFCR---LPSNAG 126 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 W + R++A+ LY G R+SE L +++ S + GKG K R V K Sbjct: 127 ILW-ETRDAALFASLYSTGCRVSELAGLDIKDLDKTLSYAIVFGKGKKERKV-FFAEFAK 184 Query: 209 AILEYY-----DLCPF-------DLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLG 255 L+ Y DL D I+ LF + + L G+ RYI + RY+ Sbjct: 185 EYLKIYLQERTDLVEKFKGQVQKDGKGKIRDALFINQKAQALTSRGI--RYI--INRYVE 240 Query: 256 LPLST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 L + H RHSFA+ L++ G D+R +Q +LGH +STTQ YT++ ++ + Sbjct: 241 LSPELKHLSPHAFRHSFASTLITRGADIRVVQELLGHESVSTTQRYTHITAEQ----LQN 296 Query: 313 IYDQTHP 319 +Y HP Sbjct: 297 LYKTAHP 303 >gi|291615497|ref|YP_003522605.1| integrase family protein [Nitrosococcus halophilus Nc4] gi|291582559|gb|ADE17015.1| integrase family protein [Nitrosococcus halophilus Nc4] Length = 310 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 82/308 (26%), Positives = 140/308 (45%), Gaps = 25/308 (8%) Query: 11 SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70 + + + R+++L +L +G S+ T Y D L + EE + RQ ++ + Sbjct: 5 AVDFWQARKDFLAHLHYTKGYSQGTCYGYNSD----LGIWGRWLEE--ADKDWRQATHVD 58 Query: 71 IRAFIS-KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 F++ + R + + R S + SF K+ K + I K+ +P L Sbjct: 59 TEQFVAWQMRERGTKAHIVARRSSCLGSFYKWAMKNALVESDPIYLADKPKRPYRIPIWL 118 Query: 130 NEKQALT----------LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 +++ L L +N+ K I R + L+ GLRISEAL++ + Sbjct: 119 EKEEQLAFQEAVRRVDDLPENIFGRPREHIKAIRRRYDFLFGLILNSGLRISEALAVKIR 178 Query: 180 NIM---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 ++ ++R+ GKG++ R+VPL + + + D + + P K Sbjct: 179 DVRIVNGVAKSVRVIGKGNRERLVPLPEAFGQVFGAWLQGRGGDDFVFAKAP-----GEK 233 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 P P + Y+R+L G+ T H LRH++AT LL G +L IQ +LGH LSTTQ Sbjct: 234 PPGPHAVRTYLRRLIERAGIDKPVTPHKLRHTYATRLLEAGAELVDIQVLLGHVDLSTTQ 293 Query: 297 IYTNVNSK 304 IYT+V+ + Sbjct: 294 IYTHVSEE 301 >gi|90422292|ref|YP_530662.1| phage integrase [Rhodopseudomonas palustris BisB18] gi|90104306|gb|ABD86343.1| phage integrase [Rhodopseudomonas palustris BisB18] Length = 304 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 82/297 (27%), Positives = 143/297 (48%), Gaps = 14/297 (4%) Query: 12 FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE-KITIQTIRQLSYTE 70 EL + ++L +ER LS TLQ+Y D F +L E +T + +R Y E Sbjct: 1 MELRRLTASFLDTCAVERQLSANTLQAYGYDLADFCAWLKGQGEAPAVTTEHLRD--YLE 58 Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 S +K+ +++R ++ +++F ++L R + L + LPRAL+ Sbjct: 59 -----SMMVARKLSPSTVRRRIACLRAFFRFLDDRGEMPDPFTGWRLKLPRRKRLPRALS 113 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAI-LYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 ++A L+ + + + + + L+ G+R+ E + ++ D ++LR Sbjct: 114 REEANQLLTSARAPGAARQSLPASTPLCVEIRLMISTGIRVGELCKIATGDVSSDGASLR 173 Query: 190 IQGKGDKIRIVPLL-PSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYI 247 I GKG + R+V + P++R E L L+ PLF G+ L P F+ + Sbjct: 174 IHGKGSRDRVVYVSNPALRN---ELRKLTTLRQRLSAGDGPLFVNRNGENLRPYSFRTKL 230 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 R GL T H LRH+ AT L+ +G D+R +Q +LGH ++TT+IYT+V+ + Sbjct: 231 RNFAGQAGLRRRVTPHMLRHTAATLLIESGVDIRIVQRLLGHSSIATTEIYTHVSDE 287 >gi|119475308|ref|ZP_01615661.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143] gi|119451511|gb|EAW32744.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143] Length = 312 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 85/308 (27%), Positives = 144/308 (46%), Gaps = 30/308 (9%) Query: 26 EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85 E+ R LS TL +Y D +F A Y + + +++R +I+ + Sbjct: 25 EVARQLSPHTLSNYRRDLEKF----ADYCRHRAIVDH-HHAHNSDVRQWIALLHRNGLSG 79 Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN--EKQALTLVDNVLL 143 SL RSLS ++SF KY K+ + + ++ + LP+ L+ Q +D Sbjct: 80 TSLSRSLSSLRSFYKYSNKQG-GDHNPAIGIKAPRGEKRLPKTLDIDSMQQFLSIDG--- 135 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 W+ R+ AIL L Y GLR+SE + + ++ + + GKG K R +P+ Sbjct: 136 -----DDWLTVRDRAILELFYSSGLRLSELVDMDTEDFDLQNGLIIVTGKGRKTRTLPVG 190 Query: 204 PSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 A+ ++ D P I F +G L Q+ +++ GL Sbjct: 191 SHAIAALKNWFSVRSDAHP------INNAAFVSAKGTRLGQRGIQQRLKKYSLQQGLGQK 244 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHSFA+H+L + GDLR++Q +LGH ++TTQ+YT+++ ++ + ++YD HP Sbjct: 245 IHPHMLRHSFASHMLESSGDLRAVQELLGHANITTTQVYTHLDFQH----LAKVYDTAHP 300 Query: 320 SITQKDKK 327 +K K Sbjct: 301 RAVRKKPK 308 >gi|293607049|ref|ZP_06689392.1| integrase/recombinase [Achromobacter piechaudii ATCC 43553] gi|292814539|gb|EFF73677.1| integrase/recombinase [Achromobacter piechaudii ATCC 43553] Length = 332 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 72/248 (29%), Positives = 118/248 (47%), Gaps = 19/248 (7%) Query: 56 EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115 +K I+ + E RA + RR L+ ++ F + + + L Sbjct: 86 QKADIEAWFAFRHEETRATTANRR------------LAALRRFFAWALREHRSQRDPCLT 133 Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175 + K+ LP+ L+E+Q + LL T+ R+ A+L LY GLR+SE + Sbjct: 134 LVAAKQPPRLPKTLSEQQV-----DALLRAPDATQPRGLRDRAMLETLYATGLRVSELVG 188 Query: 176 LTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGI 233 + ++ ++ +R+ GKG K R+VPL I Y +L Q LF Sbjct: 189 VRALDVSLNEGVVRVVLGKGGKDRLVPLGAEAAHWIDLYSKTARPELAAGRQSDALFITG 248 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R + ++ F + +++ + + H LRH+FATHLL++G DLR +Q +LGH +S Sbjct: 249 RAEAMSRQAFWQLVKKYALLADIHAPLSPHVLRHAFATHLLNHGADLRVVQMLLGHADIS 308 Query: 294 TTQIYTNV 301 TTQIYT+V Sbjct: 309 TTQIYTHV 316 >gi|325912006|ref|ZP_08174408.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 143-D] gi|325476191|gb|EGC79355.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 143-D] Length = 307 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 89/311 (28%), Positives = 148/311 (47%), Gaps = 22/311 (7%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 + LK N+L+N ER S T ++Y D + F+ E I ++ LS +I Sbjct: 6 DFLKLYYNYLKN---ERNYSINTCKAYMDDLSEAR---TFFVENGGFIDWLK-LSSRDIE 58 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALN 130 FI +K + R +S ++SF ++L KR I ++++R K LP L Sbjct: 59 IFIQYLAQKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGDHKK--LPEFLY 116 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 + + ++ ++ T + RN A+L L Y G+R+SE +L I + + + + Sbjct: 117 SDEMVKVLKSI-----STTTPLGLRNMALLELFYATGMRVSEISNLKLDQIDFELNLILV 171 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIR 248 GKG+K R V + A+ Y L L+ +F G + + I+ Sbjct: 172 HGKGNKDRYVAFGEEAKTALNNYLVEARKKLLLHKTDYGYVFLNSNGNRITSRGLEYIIK 231 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 + G+ S H LRH+FAT +L+NG DLR++Q +LGH +STTQIYT+V ++ Sbjct: 232 NIFLNAGISASVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQH--- 288 Query: 309 WMMEIYDQTHP 319 + +IY + P Sbjct: 289 -LCDIYHKYFP 298 >gi|312876773|ref|ZP_07736752.1| tyrosine recombinase XerD [Caldicellulosiruptor lactoaceticus 6A] gi|311796504|gb|EFR12854.1| tyrosine recombinase XerD [Caldicellulosiruptor lactoaceticus 6A] Length = 291 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 82/297 (27%), Positives = 141/297 (47%), Gaps = 18/297 (6%) Query: 24 NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83 +L+ + S+ T+ SY D ++++ FL + I I+ T I IS +++ K Sbjct: 10 HLQRQNRFSQNTISSYLRDAKKYIEFL-----DNIKIKLENTSQATLIAYIISMQKSGK- 63 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 + ++ R++ +K F +LK + I I + K S P+ L + LL Sbjct: 64 SNSTIVRAIVSLKVFYDFLKTQNIVDIGKI-EIEPPKLEKSPPQILTRDEV-----EKLL 117 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 E R+ A+L LLY G+R+SE ++L +I + + + K + R++P+ Sbjct: 118 SCPKEDDIKGIRDKAMLELLYATGIRVSELINLNLDDINLEHGYIICKNK-KRDRVIPIG 176 Query: 204 PSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 A+ Y P+ + LF G+ + F + ++ + G+ T Sbjct: 177 SYAISAVERYLRHSRPYLAKNKDEEALFLNFNGERMTRQGFWKIVKFYAQSAGIDKEITP 236 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHSFATHL+ NG D+R++Q +LGH +STTQ Y V + + E+Y +THP Sbjct: 237 HVLRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVK----LKEVYQKTHP 289 >gi|329117924|ref|ZP_08246638.1| site-specific recombinase XerC [Neisseria bacilliformis ATCC BAA-1200] gi|327466005|gb|EGF12276.1| site-specific recombinase XerC [Neisseria bacilliformis ATCC BAA-1200] Length = 314 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 89/299 (29%), Positives = 147/299 (49%), Gaps = 19/299 (6%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR-- 86 R S+ T++ Y + RQF+ L Y + Q + TEI + + T K D Sbjct: 24 RCFSEGTIEGYRSNLRQFVSRLGDYAAKHKVADF--QTACTEI--VMMETITMKQADNPE 79 Query: 87 ----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK-SNSLPRALNEKQALTLVDNV 141 +++R + +SF+ YL K + S +L K +LP++++ L+DN Sbjct: 80 LKATTIRRYICAWRSFIAYLVKANVLDLSYDRFRFDLPKLPETLPKSVDMSVLDKLLDNP 139 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 + W+ RN I L+ GLRISE +L ++ + +R+ GKG + R+VP Sbjct: 140 QC-LPKQPHWMYLRNLCIFELMTYSGLRISEVSNLLMTDVYFAERQIRVIGKGQRTRLVP 198 Query: 202 LLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPLS 259 + +V K I Y + +N+ LF G GK L P + + ++ LG + Sbjct: 199 ITDTVAKRIRAYLKERSASAVNIRTN-HLFVGRGGKMLRPCSIRLSLHKMVAARLGEEMH 257 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 T H+LRHS ATH + +LR +Q +LGH ++TTQIYT+++ NG ++ E++ Q H Sbjct: 258 ITPHSLRHSCATHFVRETHNLRFVQILLGHKSIATTQIYTHLD--NG--FVQEMFHQHH 312 >gi|255692650|ref|ZP_05416325.1| tyrosine recombinase XerC [Bacteroides finegoldii DSM 17565] gi|260621626|gb|EEX44497.1| tyrosine recombinase XerC [Bacteroides finegoldii DSM 17565] Length = 293 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 79/306 (25%), Positives = 142/306 (46%), Gaps = 23/306 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L L ER S T+ +Y D RQ F E ++ +L IR +I Sbjct: 4 ESFLDYLRYERNYSDKTVLAYGEDIRQLQEFAQEEYGEFDPLEVEAEL----IREWIVSL 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S+ R LS +++F K+L K+ T + + K +LP L E + L+ Sbjct: 60 MDKGYTSTSVNRKLSTLRTFYKFLLKKGEVTVDPLRKIVGPKNKKTLPVFLKENEMNKLL 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D T + R+ I+ + Y G+R+SE + L +++ S L++ GK +K R Sbjct: 120 D----ETDFGEGFKGCRDRLIIEMFYATGMRLSELIDLDDKDVDFSGSCLKVTGKRNKQR 175 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRY 253 ++P +R +L Y D+ N +P F G+ L + +++ Sbjct: 176 LIPFGDELRDWMLGYIDV------RNEMIPERSEAFFVRENGERLYKNLVYNLVKRNLSK 229 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 + + H LRH+FAT +L+N +L +++ +LGH ++TT+IYT+ + + ++ Sbjct: 230 VATLKKKSPHVLRHTFATTMLNNNAELGAVKELLGHESITTTEIYTHATFEE----LKKV 285 Query: 314 YDQTHP 319 Y Q HP Sbjct: 286 YKQAHP 291 >gi|319936094|ref|ZP_08010516.1| hypothetical protein HMPREF9488_01347 [Coprobacillus sp. 29_1] gi|319808881|gb|EFW05399.1| hypothetical protein HMPREF9488_01347 [Coprobacillus sp. 29_1] Length = 301 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 80/298 (26%), Positives = 145/298 (48%), Gaps = 17/298 (5%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 K +N+L + ++ L+ TL++Y D QF ++ F + + +I +I Sbjct: 4 KHVENYLNYCQYQKRLTGKTLKAYRIDLNQFYTYMQFKNLK----------NKKDISVYI 53 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM-RNLKKSNSLPRALNEKQA 134 + T R++KR ++ IK+F YL+K+ E+ + K+ LP+ + + Sbjct: 54 QQLHT-TYKPRTVKRKIAAIKAFYTYLEKQDFLKENPFHKIDYRFKEPIRLPKTITLHEL 112 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 L ++ ++ + + R+ AIL LL G+R+SE L N+ ++T+ I GKG Sbjct: 113 NHLYQSLYAYSKQTSNRVITRDIAILELLICTGIRVSEVSHLLKSNVFIRENTIIINGKG 172 Query: 195 DKIRIVPLL-PSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRR 252 K RI+ + ++ +++L Y L ++ + P F R G L+ + I + Sbjct: 173 SKERIIYIDNQNLIQSLLSYQRLFQDEIE---KSPYFFINRLGHHLSEQSIRFMIVKYCH 229 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 + T H RH+FAT +L D+R IQ ILGH ++TTQIYT++++ + M Sbjct: 230 LFHIDSHITPHMFRHTFATMMLEEDVDIRYIQEILGHSSITTTQIYTHMSAHKQKEIM 287 >gi|282890174|ref|ZP_06298704.1| hypothetical protein pah_c014o025 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499831|gb|EFB42120.1| hypothetical protein pah_c014o025 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 329 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 129/256 (50%), Gaps = 17/256 (6%) Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 IR F++ ++ R++ R LS +++F KY +K + + + + + +P +L+ Sbjct: 82 IRGFLAHLSDNQVHKRTVVRRLSSLRTFFKYTLAQKWISANPTEELESPRVEKKVPNSLS 141 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 Q TL D T ++ R+ I+ L Y GLR+SE ++L Q +++ Sbjct: 142 YDQVQTLFDQPDTKT-----FLGFRDRVIMELFYSSGLRVSELVALDRQEFDPKNLLIKL 196 Query: 191 QGKGDKIRIVPLLPSVRK---AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 +GKG K RIVP+ + A L + + C +++ + I L + R + Sbjct: 197 KGKGKKERIVPITKNAADWINAYLTHPERC-VEIDGHFAQQDSNAIFLNRLGTRLTTRSV 255 Query: 248 -RQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 R+ +YL GL T HT+RH+ ATH L NG DL++IQ ILGH L+TT IYT V+ Sbjct: 256 DRKFDKYLTASGLIGKVTPHTIRHTIATHWLENGMDLKTIQMILGHISLATTTIYTQVSK 315 Query: 304 KNGGDWMMEIYDQTHP 319 ++YDQTHP Sbjct: 316 ----GLKKKVYDQTHP 327 >gi|262406148|ref|ZP_06082698.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_22] gi|294644043|ref|ZP_06721820.1| tyrosine recombinase XerC [Bacteroides ovatus SD CC 2a] gi|294810195|ref|ZP_06768862.1| tyrosine recombinase XerC [Bacteroides xylanisolvens SD CC 1b] gi|298483048|ref|ZP_07001229.1| tyrosine recombinase XerC [Bacteroides sp. D22] gi|262357023|gb|EEZ06113.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_22] gi|292640567|gb|EFF58808.1| tyrosine recombinase XerC [Bacteroides ovatus SD CC 2a] gi|294442607|gb|EFG11407.1| tyrosine recombinase XerC [Bacteroides xylanisolvens SD CC 1b] gi|298270792|gb|EFI12372.1| tyrosine recombinase XerC [Bacteroides sp. D22] Length = 293 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 77/301 (25%), Positives = 146/301 (48%), Gaps = 13/301 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L L+ ER S+ T+ +Y D +Q L + +E+ ++ IR +I Sbjct: 4 ESFLDYLQYERNYSEKTVLAYGEDIKQ----LQEFAQEEYGKFNPLEVEAELIREWIVSL 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S+ R LS +++F KYL ++ TT + ++ K LP L E + L+ Sbjct: 60 MDKGYTSTSVNRKLSSLRTFYKYLLRQGETTIDPLRKIKGPKNKKPLPVFLKENEMNRLL 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D T + R+ I+ + Y G+R+SE + L +++ S L++ GK +K R Sbjct: 120 D----ETDFGEGFKGCRDRLIIEMFYATGMRLSELIGLDNKDVDFSASLLKVTGKRNKQR 175 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 ++P +++ +LEY ++ + + R + V+ R L + L Sbjct: 176 LIPFGDELQELMLEYINVRNETIPERSEAFFIRENGERLYKNLVYNLVKRNLSKVATLK- 234 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + H LRH+FAT +L+N +L +++ +LGH ++TT+IYT+ + + ++Y Q H Sbjct: 235 KKSPHVLRHTFATTMLNNEAELGAVKELLGHESITTTEIYTHATFEE----LKKVYKQAH 290 Query: 319 P 319 P Sbjct: 291 P 291 >gi|149370706|ref|ZP_01890395.1| tyrosine type site-specific recombinase [unidentified eubacterium SCB49] gi|149356257|gb|EDM44814.1| tyrosine type site-specific recombinase [unidentified eubacterium SCB49] Length = 284 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 83/288 (28%), Positives = 139/288 (48%), Gaps = 33/288 (11%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + W++ E+ LS T+ +Y FL ++ + ++ + +R+ +Y +I K Sbjct: 18 KKWME----EQRLSHNTIMTYSNAVSLFLNYIVKHGTTEMNEEWVRRFNYD----YIIKN 69 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + +SG+K +L++ + +T E N K +LP L++++ L+ Sbjct: 70 R---FSISYQNQCISGVKKYLEF-RGLAVTLE----NYERPDKGKTLPAVLSKQEVKRLL 121 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKI 197 D + + ++ +L L+Y GLRI EALSL P I + + I+G KG K Sbjct: 122 DGIK----------NLKHKTLLSLVYSSGLRIGEALSLRPTAIDSTRKLIFIEGAKGKKD 171 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 R V L + + + +YY + + LF G G + + + + G+ Sbjct: 172 RYVLLSSKLLEDLRKYYTV------YRPKTYLFEGRSGTMYSASSARAVFKSAAKRAGIT 225 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 HTLRHSFATHLL NG DLR IQ +LGH TT IYT+V++++ Sbjct: 226 KEVRLHTLRHSFATHLLENGTDLRYIQQLLGHQSPKTTMIYTHVSTRS 273 >gi|242399198|ref|YP_002994622.1| Probable tyrosine recombinase xerC-like protein [Thermococcus sibiricus MM 739] gi|242265591|gb|ACS90273.1| Probable tyrosine recombinase xerC-like protein [Thermococcus sibiricus MM 739] Length = 278 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 81/264 (30%), Positives = 131/264 (49%), Gaps = 22/264 (8%) Query: 40 ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL 99 E + Q + +Y E ++ + +Y F++K + + ++SL + +KS+ Sbjct: 15 EGKSPQTVRMYTYYVER--FLKDVENPNYRSALRFLAKLKKEGYSNKSLNLVVQALKSYF 72 Query: 100 KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159 ++ + + +++ K SLP++L + L++ V R+ I Sbjct: 73 RFE-----GLDEDAEKLKSPKVPRSLPKSLTREDVKRLLNAV--------PPTRKRDRLI 119 Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCP 218 + LLYG GLR+SE +L ++I ++ L ++G KG K RIVPL S+ K I +Y Sbjct: 120 ILLLYGTGLRVSEVCNLKIKDIDFNRGVLTVEGGKGAKDRIVPLSGSLLKEIEKY----- 174 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNG 277 + + LF IR + + + L++Y +S T H LRHSFATH+L G Sbjct: 175 LETRKDGSEYLFVEIRREKKDKISPKTVWYLLKKYGNKANVSVTPHMLRHSFATHMLERG 234 Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301 D+R IQ ILGH LSTTQIYT V Sbjct: 235 VDIRVIQEILGHSSLSTTQIYTKV 258 >gi|159044160|ref|YP_001532954.1| tyrosine recombinase [Dinoroseobacter shibae DFL 12] gi|157911920|gb|ABV93353.1| tyrosine recombinase [Dinoroseobacter shibae DFL 12] Length = 308 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 77/248 (31%), Positives = 120/248 (48%), Gaps = 16/248 (6%) Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 Q+ +I ++ + + R LS I+ ++ + T++ L ++ ++ Sbjct: 47 QVQRADIETYLIACSDAGLSQATRARRLSAIRQLYRFAYEEGWRTDNPSLQIKGPGRAKR 106 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWID--ARNSAILYLLYGCGLRISEALSLTPQNIM 182 LP+ L+E VD +L + + RN+ +L LLY GLR++E L + Sbjct: 107 LPKTLSEAD----VDRLLAAARNTGRSPSDRQRNACMLELLYATGLRVTELCGLPVAAVR 162 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVR---KAILEYYDLCPFDLNLNIQLP---LF--RGIR 234 D + ++GKG K R+VPL R +A L+ D P LF RG Sbjct: 163 GDPHLILVRGKGGKERMVPLSTPARTELQAWLKVRDAAEQTAISKGAAPSKYLFPSRGKL 222 Query: 235 GKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 G L F I+ + G+ P T HTLRH+FATHLL+ G DL SIQ++LGH ++ Sbjct: 223 GH-LTRHRFYALIKDIAVAAGVDPSGVTPHTLRHAFATHLLARGADLMSIQALLGHADVA 281 Query: 294 TTQIYTNV 301 TT+IYT+V Sbjct: 282 TTEIYTHV 289 >gi|15639386|ref|NP_218835.1| integrase/recombinase (xprB) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025628|ref|YP_001933400.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14] gi|3322673|gb|AAC65379.1| integrase/recombinase (xprB) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018203|gb|ACD70821.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14] gi|291059785|gb|ADD72520.1| tyrosine recombinase XerC [Treponema pallidum subsp. pallidum str. Chicago] Length = 297 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 82/307 (26%), Positives = 146/307 (47%), Gaps = 26/307 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +L+ L R LS T+ +Y D F +L + + +++ +++R F+ + Sbjct: 8 QYLEYLFRVRRLSAHTVSAYARDLNLFERWL------QHAQRACARVTVSDMRLFVCELG 61 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + + S+ R LS ++ F + KK+ ++ +RN+K + LPR + QA Sbjct: 62 RRGLSAASINRVLSVVRGFYVFAKKKHWCADNPARLVRNIKGPSKLPRFMFPPQAKAFYT 121 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 L + + W + R++A+ +LY G R+SE +L+ +++ S+ ++GKGD+ R Sbjct: 122 ---LPSRTDILWQE-RDAALFAMLYSTGCRVSEIAALSLKDVHPHLSSAIVRGKGDRERT 177 Query: 200 VPLLPSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 V + P + + Y C + LF RG+ L+ Q + RY+ Sbjct: 178 VFIAPFAQNFLHVYMQARAQRCA--RYASCTPALFVNQRGRSLSVRGIQYLVS---RYVL 232 Query: 256 LPLSTTA---HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 L A H RHSFA+ L+ G D+R Q +LGH +STTQ Y +V S+ + + Sbjct: 233 LAQDVHALSPHAFRHSFASTLIRRGADVRVAQELLGHASVSTTQRYVHVTSEQ----LQD 288 Query: 313 IYDQTHP 319 +Y + HP Sbjct: 289 LYHRAHP 295 >gi|325127862|gb|EGC50768.1| tyrosine recombinase XerD [Neisseria meningitidis N1568] Length = 291 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 117/233 (50%), Gaps = 11/233 (4%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R+LS K ++++ I T++ ++ K ++P + E+Q L+ T Sbjct: 66 SQARALSACKRLYIWMEREGIRTDNPTCLLKPPKIDKNIPTLITEQQISRLLAAPDTDTP 125 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 H R+ A+L L+Y GLR+SEA+ L N+ D+ + GKGDK R+VP+ Sbjct: 126 H-----GLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQES 180 Query: 207 RKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + YY + P L LF + ++ + +++ G+ + H+L Sbjct: 181 AYWVGRYYTEARPALLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGIG-HISPHSL 239 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 RH+FATHL+ +G DLR +Q +LGH L+TTQIYT+V + W+ + + H Sbjct: 240 RHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANV----WLQGVVKEHH 288 >gi|294677399|ref|YP_003578014.1| tyrosine recombinase XerD [Rhodobacter capsulatus SB 1003] gi|294476219|gb|ADE85607.1| tyrosine recombinase XerD [Rhodobacter capsulatus SB 1003] Length = 318 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 81/278 (29%), Positives = 127/278 (45%), Gaps = 20/278 (7%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T+ +Y D FL F + IT L + ++ + + + + R+ G Sbjct: 27 TIAAYGRDLSDFLDFTTAKGLDLIT------LDRAAVEDWLVRLEAEGLAKATRARAALG 80 Query: 95 IKSFLKYLK-KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153 ++ L R + L + K+ LP+ L+ ++ L++ + I Sbjct: 81 GEAILPASPMTRAGGRTTPTLQISGPGKAQRLPKTLSIEEVEALLEAGRDQGRSPAEQI- 139 Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213 RN ++ LLY G+R+SE + L + + L ++GKGDK R+VPL R+A+ + Sbjct: 140 -RNRCLMELLYATGMRVSELVGLPVAAARGNPAMLMVRGKGDKERMVPLSAPAREALAAW 198 Query: 214 Y---DLCPFDLNLNIQLPLFR------GIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAH 263 D + +LP R G G G F ++ + GL P T H Sbjct: 199 LATRDAAEEAARIARRLPPSRFLFPSSGKEGHLTRQG-FHALLKDIALAAGLDPARVTPH 257 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 LRH+FATHLL G DLR IQ++LGH LSTT+IYT+V Sbjct: 258 VLRHAFATHLLQGGADLRVIQTLLGHADLSTTEIYTHV 295 >gi|332295545|ref|YP_004437468.1| Tyrosine recombinase xerC [Thermodesulfobium narugense DSM 14796] gi|332178648|gb|AEE14337.1| Tyrosine recombinase xerC [Thermodesulfobium narugense DSM 14796] Length = 306 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 83/286 (29%), Positives = 131/286 (45%), Gaps = 16/286 (5%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 K ++ L RG S+ T+ SY D + F F + + I+ + L Y+ Sbjct: 11 KALHAFVSYLFFIRGYSENTVNSYRSDIKSFFNFFKDRINDTVDIEKL-LLYYSNYLI-- 67 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 + SL+R L IK FL + ++ + I ++ KK LP L+ Sbjct: 68 ----SNNYKASSLERKLVAIKQFLIF-SFQEGYYKGKIPDIVLPKKDKRLPFFLSRSDIF 122 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 + + + +K R+ I +LY G+RISE L+L N+ + +R+ GKG Sbjct: 123 NIFNFI-----SNSKQFTIRDLLIFKMLYFTGMRISELLNLKIDNVNFESMDIRVLGKGS 177 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 K RI+P + Y L + +F +GKPL+ + +++ +L Sbjct: 178 KERIIPFHRDILDLFNSYLIFRQESLKPKCE-NIFVNSKGKPLSRQYIWKMCKKVGNFLN 236 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 L L H RHS ATHLLS G +++IQ ILGH +STTQIYT++ Sbjct: 237 LELH--PHIFRHSLATHLLSGGASIKTIQEILGHESISTTQIYTHL 280 >gi|261366946|ref|ZP_05979829.1| tyrosine recombinase XerC [Subdoligranulum variabile DSM 15176] gi|282571064|gb|EFB76599.1| tyrosine recombinase XerC [Subdoligranulum variabile DSM 15176] Length = 359 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 85/301 (28%), Positives = 149/301 (49%), Gaps = 27/301 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY---------TEE----KITIQTIRQLS 67 +L L+ + S T+ Y D R F ++ EE KI + I + Sbjct: 26 YLHYLDFVKLRSPRTVNGYYLDLRGFFRYMMIQWGRADATAKPEEIDLTKIDSKDIAGIG 85 Query: 68 YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL--KKRKITTESNILNMRNLKKSNSL 125 +I ++ R+ G ++ R LS +K F Y+ + KIT + N+ +L Sbjct: 86 KRDIFGYLDYARSANNGSKARARKLSALKGFFGYMCTQVNKITQDPT-ENVSLGAPKKTL 144 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 P+ L E ++L L++N+ ++ + + R+ I+ L CG+R++E +S+ + DD Sbjct: 145 PKYLTESESLELLNNI------QSDFYE-RDFCIITLFLNCGMRLAELVSIDLGDFRDD- 196 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQ 244 T+RI GKG K R+V L + ++A+ Y + +NL+ + LF R GK L + Sbjct: 197 -TIRITGKGGKERLVYLNDACKQALERYAKVRGGLVNLSDKDALFVSKRTGKRLTARRVE 255 Query: 245 RYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + + + + GL + H LRH+ AT + G D+ +++ ILGH +STTQIYT++N Sbjct: 256 QIVARCLQSAGLSGRGFSPHKLRHTAATLMYQGGVDMLALKEILGHENVSTTQIYTHINQ 315 Query: 304 K 304 + Sbjct: 316 Q 316 >gi|328462457|gb|EGF34479.1| tyrosine recombinase xerD [Lactobacillus rhamnosus MTCC 5462] Length = 182 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/159 (37%), Positives = 87/159 (54%), Gaps = 3/159 (1%) Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 TK + R+ AI L+Y GLR+SE + L + + L++ GKGDK R+VP+ P Sbjct: 7 TKPLGLRDRAIFELMYATGLRVSEVVGLRLDQLHLAMNLLQVTGKGDKERLVPISPQAAD 66 Query: 209 AILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 + Y L + Q P +F G L + ++ +G+ T HTLR Sbjct: 67 WVNRYLQESRPRL-IKHQQPKAVFVNFHGHALTRQAIWKNLKAYIASVGIEKDVTPHTLR 125 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 HSFAT LL NG DLR +Q +LGH +STTQIYT++++++ Sbjct: 126 HSFATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQH 164 >gi|325136023|gb|EGC58633.1| tyrosine recombinase XerD [Neisseria meningitidis M0579] gi|325202450|gb|ADY97904.1| tyrosine recombinase XerD [Neisseria meningitidis M01-240149] gi|325207798|gb|ADZ03250.1| tyrosine recombinase XerD [Neisseria meningitidis NZ-05/33] Length = 291 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 117/233 (50%), Gaps = 11/233 (4%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R+LS K ++++ I T++ ++ K ++P + E+Q L+ T Sbjct: 66 SQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLATPDTDTP 125 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 H R+ A+L L+Y GLR+SEA+ L N+ D+ + GKGDK R+VP+ Sbjct: 126 H-----GLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQES 180 Query: 207 RKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + YY + P L LF + ++ + +++ G+ + H+L Sbjct: 181 AYWVERYYTEARPLLLKGRNCDALFVSQKKTGISRQLAWMIVKEYASQAGIG-HISPHSL 239 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 RH+FATHL+ +G DLR +Q +LGH L+TTQIYT+V + W+ + + H Sbjct: 240 RHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANV----WLQGVVKEHH 288 >gi|327398234|ref|YP_004339103.1| integrase family protein [Hippea maritima DSM 10411] gi|327180863|gb|AEA33044.1| integrase family protein [Hippea maritima DSM 10411] Length = 283 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/207 (33%), Positives = 106/207 (51%), Gaps = 17/207 (8%) Query: 99 LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158 +K+ ++ + E + KK + LP+ L++K+ + D TS + ++ Sbjct: 74 IKFYYEKVMGGEKQYYELHRPKKEHKLPKVLSKKEVKIIFDV----TS------NLKHKC 123 Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLC 217 IL L+Y GLR SE L+L P +I ++ + I G KG K RI L ++ +L+YY Sbjct: 124 ILMLIYSAGLRRSEPLNLAPTDIDSERMIIHINGAKGKKDRISLLSDNLLNLLLKYYK-- 181 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 Q LF G +G +P +++ G+ + T H LRHSFATHLL G Sbjct: 182 ----EYRPQKYLFEGQKGGMYSPTSIANILKKAAIKAGIKKTVTPHMLRHSFATHLLEQG 237 Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSK 304 DLR IQ +LGH TT+IYT+V+ K Sbjct: 238 TDLRYIQELLGHESSKTTEIYTHVSKK 264 >gi|302872232|ref|YP_003840868.1| tyrosine recombinase XerD [Caldicellulosiruptor obsidiansis OB47] gi|302575091|gb|ADL42882.1| tyrosine recombinase XerD [Caldicellulosiruptor obsidiansis OB47] Length = 291 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 81/302 (26%), Positives = 145/302 (48%), Gaps = 18/302 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + +L+ + S+ T+ SY D ++++ FL KI ++ Q T I IS + Sbjct: 5 EAFCDHLQKQNRFSQNTISSYLRDAKKYIEFL---DNMKIKLENTSQA--TLIAYIISMQ 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 ++ K + ++ R++ +K F +LK +KI I + K + P+ L + Sbjct: 60 KSGK-SNSTIARAIVSLKVFYDFLKTQKIIDIGKI-EIEPPKLEKNPPQILTRDEV---- 113 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL E R+ A+L +LY G+R+SE ++L +I + + + K + R Sbjct: 114 -EKLLSCPKEEDIKGIRDKAMLEVLYATGIRVSELINLNLDDINLEHGYIICKNK-KRDR 171 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 ++P+ A+ +Y P+ + LF G+ + F + ++ + G+ Sbjct: 172 VIPIGSYAISAVEKYLRHSRPYLAKSKNEEALFLNFNGERMTRQGFWKIVKFYAQSAGID 231 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T H LRHSFA HL+ NG D+R++Q +LGH +STTQ Y V + + E+Y +T Sbjct: 232 KEITPHVLRHSFAIHLIENGADVRAVQQMLGHADISTTQRYLQVANVK----LKEVYQKT 287 Query: 318 HP 319 HP Sbjct: 288 HP 289 >gi|325286409|ref|YP_004262199.1| integrase family protein [Cellulophaga lytica DSM 7489] gi|324321863|gb|ADY29328.1| integrase family protein [Cellulophaga lytica DSM 7489] Length = 297 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 63/192 (32%), Positives = 104/192 (54%), Gaps = 27/192 (14%) Query: 120 KKSNSLPRALNEKQA---LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 +K+ LP+ L+ ++ +T+ +N+ ++ IL ++YGCGLRISE ++L Sbjct: 114 RKAKKLPKVLSLQEVADIITVTNNI-------------KHKTILKMIYGCGLRISECVNL 160 Query: 177 TPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233 ++I D + +R+ KG+K RI L P++ + YY + + LF G Sbjct: 161 KVEDI--DSNNMRVWVRNAKGNKDRITLLSPTMLAQLRAYY------IVYKPKKWLFEGA 212 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 GK + ++ + ++ + + T HTLRHSFATHLL G +LR IQ +LGH Sbjct: 213 DGKQYSASSIRQVFNRSKKKARVHMPATVHTLRHSFATHLLDAGTNLRYIQKLLGHNSSK 272 Query: 294 TTQIYTNVNSKN 305 TT+IYT+V++ N Sbjct: 273 TTEIYTHVSTTN 284 >gi|295085443|emb|CBK66966.1| tyrosine recombinase XerC subunit [Bacteroides xylanisolvens XB1A] Length = 293 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 77/301 (25%), Positives = 145/301 (48%), Gaps = 13/301 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L L+ ER S+ T+ +Y D +Q L + +E+ ++ IR +I Sbjct: 4 ESFLDYLQYERNYSEKTVLAYGEDIKQ----LQEFAQEEYGKFNPLEVEAELIREWIVSL 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S+ R LS +++F KYL ++ TT + ++ K LP L E + L+ Sbjct: 60 MDKGYTSTSVNRKLSSLRTFYKYLLRQGETTIDPLRKIKGPKNKKPLPVFLKENEMNRLL 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D T + R+ I+ + Y G+R+SE + L +++ S L++ GK +K R Sbjct: 120 D----ETDFGEGFKGCRDRLIIEMFYATGMRLSELIGLDNKDVDFSASLLKVTGKRNKQR 175 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 ++P +++ +LEY + + + R + V+ R L + L Sbjct: 176 LIPFGDELQELMLEYISVRNETIPERSEAFFIRENGERLYKNLVYNLVKRNLSKVATLK- 234 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + H LRH+FAT +L+N +L +++ +LGH ++TT+IYT+ + + ++Y Q H Sbjct: 235 KKSPHVLRHTFATTMLNNEAELGAVKELLGHESITTTEIYTHATFEE----LKKVYKQAH 290 Query: 319 P 319 P Sbjct: 291 P 291 >gi|210619453|ref|ZP_03292039.1| hypothetical protein CLONEX_04273 [Clostridium nexile DSM 1787] gi|210148851|gb|EEA79860.1| hypothetical protein CLONEX_04273 [Clostridium nexile DSM 1787] Length = 288 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 74/281 (26%), Positives = 136/281 (48%), Gaps = 28/281 (9%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRS 87 RGL+ T++SY + FL + ++ +++ E+R F+ + T+ + DR+ Sbjct: 15 RGLTDHTIKSYSTYILAYFDFLT-----DVIHKSPEDVTWDEMRQFVRWLQDTRSLSDRT 69 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 + +S ++ F Y+ + ++ L R K N LP ++++ T + + Sbjct: 70 MNAVISQLRFFTIYVLHKPW--DATQLPFR--KFDNYLPYVPSQQEVKTFISTI------ 119 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLP 204 D + A++ L+Y GLRI E L Q+I ++ +RI GK R L Sbjct: 120 ----PDLKQKAMVSLMYSSGLRIGEVCHLKYQDI--ERRNMRIHISHGKNRSDRYALLSK 173 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 + + + +Y+ +D ++ P R + +P++ R+I + R LG P T H+ Sbjct: 174 TALEILSQYW--FAYDKPVDWLFPKQRD-KSQPIDTFYLSRHIHEHERRLGWPERITCHS 230 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 RH+F THL NG DL +IQ+ LGH L++T IY ++ + + Sbjct: 231 FRHAFGTHLYENGADLLTIQAYLGHKSLASTSIYVHLATNS 271 >gi|49474798|ref|YP_032840.1| integrase /recombinase xerD [Bartonella quintana str. Toulouse] gi|49240302|emb|CAF26784.1| Integrase /recombinase xerD [Bartonella quintana str. Toulouse] Length = 315 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 79/292 (27%), Positives = 144/292 (49%), Gaps = 20/292 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY--TEIRAFISK 77 ++L+ + ERG S TL +Y+ D + + ++++++ ++ S ++ +S Sbjct: 9 HFLEMMSAERGASTHTLAAYQHDLQ--------WAQDELSLHSVSLFSAQKEDLIGLLSL 60 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 S R LS ++ F ++L + + ++ ++ LP+ ++E L Sbjct: 61 MHILGFAASSQARRLSTLRQFYRFLYAEGMRVDDPSHDLDAPRQGRPLPKVISEDGVTKL 120 Query: 138 VDNVLLHTSH-----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 +D L + + + R ++ +LY GLRISE +SL Q + + ++ ++G Sbjct: 121 LDLAQLEVNQADYGSKDHFRALRLQVLIEMLYATGLRISELVSLPVQAVRGKEYSILVRG 180 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF--RGIRGKPLNPGVFQRYIRQL 250 KG K RIV L + + ++ L + L LF R G + V R ++ L Sbjct: 181 KGKKERIVLLSKKACQVLSQWLSLRDQRKD-AASLYLFPARSETGY-IARQVVARELKGL 238 Query: 251 RRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + G+ S + H LRH+FA+HLL NG DLR++Q +LGH ++TTQIYT+V Sbjct: 239 AKRAGIKSSGFSPHVLRHAFASHLLQNGADLRAVQHLLGHSDIATTQIYTHV 290 >gi|163733378|ref|ZP_02140821.1| phage integrase family protein [Roseobacter litoralis Och 149] gi|163736004|ref|ZP_02143430.1| phage integrase family protein [Roseobacter litoralis Och 149] gi|161390729|gb|EDQ15072.1| phage integrase family protein [Roseobacter litoralis Och 149] gi|161393166|gb|EDQ17492.1| phage integrase family protein [Roseobacter litoralis Och 149] Length = 332 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 128/288 (44%), Gaps = 24/288 (8%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI---SKRRTQKIG 84 +R S+ T++SY R FL F+A + + T+ +L+ E+ AF+ R IG Sbjct: 21 QRNASQHTVKSYRDTWRLFLRFVAVRCGKPVVRLTLSELTAAEVIAFLHHLESVRGDTIG 80 Query: 85 DRSLKRSLSGIKSFLKYLKKRK---ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 R+ + L+ ++SF ++ R+ + + ++N+ K P L ++ Sbjct: 81 TRNCR--LAALRSFFGFVATREPELMAQCAEVMNVPTKKAPIRAPDYLEPEEV-----QA 133 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIV 200 +L + I R+ +L LY G RI EAL L PQ I + +R+ GKG K RI Sbjct: 134 ILAQPDRSTLIGQRDHTLLSFLYNTGARIQEALDLCPQAIRFEAPGCVRLYGKGRKERIS 193 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 PL P + P + LF G PL+ + + + + + + T Sbjct: 194 PLWPETVALLRSLLKRVPRPADAA----LFVNRYGSPLSASGVRFKLAEYVKAAAVDVPT 249 Query: 261 ------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 T H+ RH+ A HL++ G D+ I+S LGH L TT Y N Sbjct: 250 LAQKHVTPHSFRHATAVHLVAAGVDVTVIRSWLGHVSLETTNHYAQAN 297 >gi|220921142|ref|YP_002496443.1| tyrosine recombinase XerD [Methylobacterium nodulans ORS 2060] gi|219945748|gb|ACL56140.1| tyrosine recombinase XerD [Methylobacterium nodulans ORS 2060] Length = 308 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 85/290 (29%), Positives = 135/290 (46%), Gaps = 19/290 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +L L ERG S TL +Y D +L LA + ++ IRA+++ Sbjct: 13 QPYLDMLAAERGASANTLAAYRRDLDDYLAHLAAEGLDPAAVEA------PMIRAYMADL 66 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA---L 135 + + S R LS I+ F ++L + K+ +LP+ L+ + L Sbjct: 67 DARGLKASSAARRLSCIRGFHRFLYAEGYAPTDPTAPVSGPKRGRALPKVLSVAEVDRLL 126 Query: 136 TLVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 ++ + + ++ A R +L LLY GLR+SE ++L + + L ++GKG Sbjct: 127 SVAKEAVAQAPNLSEAARAQRLLCLLELLYATGLRVSELVALPRAAALTRERYLVVRGKG 186 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRG-IRGKPLNPGVFQRYIRQLRR 252 + R+VPL + R A+ + + L P LF L F R ++ Sbjct: 187 GRERLVPLTEAARAAMAAHLTM------LAAPGPWLFPADSESGHLTRQAFARDLKLAAA 240 Query: 253 YLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G+ + H LRH+FA+HLL NG DLR +Q +LGH +STTQIYT+V Sbjct: 241 AAGIRADRVSPHVLRHAFASHLLQNGADLRVVQELLGHADISTTQIYTHV 290 >gi|291561258|emb|CBL40057.1| tyrosine recombinase XerD subunit [butyrate-producing bacterium SS3/4] Length = 284 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 86/300 (28%), Positives = 146/300 (48%), Gaps = 23/300 (7%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 +E E+ SK T SY+ D L+ +A Y EE I +++ T + ++I + Sbjct: 1 MEEEKHASKNTTLSYQRD----LLKMADYLEEN-GITDCGKVTKTALNSYILFLEKEGKA 55 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--L 142 ++ R+L+ +SF +L K E I R+ S P+ + + VD V L Sbjct: 56 ASTVSRALASTRSFFGWLFK-----EGRI--RRDPADSMHAPKIEKKVPVILTVDEVTKL 108 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-KIRIVP 201 L + R+ A+L LLY G+R++E ++L ++ + S I + + K R++P Sbjct: 109 LEQPSGANPKEIRDKAMLELLYATGIRVTELVNLKLSDV--NMSIGFITCRDEHKERMIP 166 Query: 202 LLPSVRKAILEYYDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 + + A+ +Y + F +L LF G+ ++ F + I+ G+ Sbjct: 167 FGHAAKDALAKYLESASETFLKGTRSEL-LFTNYSGRAMSRQGFWKIIKYYGERAGIEED 225 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T HTLRHSFA HLLSNG D+R++Q+++GH L++TQ+YT + + E Y HP Sbjct: 226 ITPHTLRHSFAAHLLSNGADMRAVQTMMGHSDLASTQMYTAYAMDSA---VREAYQGAHP 282 >gi|309389348|gb|ADO77228.1| integrase family protein [Halanaerobium praevalens DSM 2228] Length = 312 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 92/318 (28%), Positives = 153/318 (48%), Gaps = 21/318 (6%) Query: 9 IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ--TIRQL 66 I L+ + + L++E+G S+LT++ Y D Q +L + K + + +L Sbjct: 4 ISELNFLQALNKFKKYLKVEKGYSQLTIKEYNSDLNQLHKYLKEELDFKADFKPAEVDRL 63 Query: 67 SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL- 125 +E A K R+ R L I+SF KYL I ++ + + K L Sbjct: 64 DISEFLADAVIINDNKAVTRN--RKLFAIRSFYKYLLHYGIVNQNPAEAIESSKTEIRLE 121 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDD 184 P L K+A ++ + E I+ R+ AI+ L GLRISE ++L N+ + Sbjct: 122 PIYLKLKEAKQFINAI-----SENGGINRLRDLAIVKLFLYAGLRISELVNLDFDNLDFE 176 Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-----LPLFRGIRGKPLN 239 +++ GKG+K R VPL V AI +Y P ++ I+ +F GK ++ Sbjct: 177 DCSIKFYGKGNKERYVPLHHDVILAIKKY---LPERNSIKIKENDARQAIFISRHGKRIS 233 Query: 240 PGVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 P Q ++++ + GL + T H LRH+FA+ L D++ +Q +LGH LSTTQI Sbjct: 234 PRTIQLFVKKYAKKSGLGRADKITPHKLRHTFASTLYRQTKDIKVVQDLLGHANLSTTQI 293 Query: 298 YTNVNSKNGGDWMMEIYD 315 YT+V+++ + E+ D Sbjct: 294 YTHVDTEEKKSAIDEMPD 311 >gi|261392878|emb|CAX50459.1| tyrosine recombinase XerD [Neisseria meningitidis 8013] gi|325144209|gb|EGC66516.1| tyrosine recombinase XerD [Neisseria meningitidis M01-240013] gi|325203840|gb|ADY99293.1| tyrosine recombinase XerD [Neisseria meningitidis M01-240355] gi|325206404|gb|ADZ01857.1| tyrosine recombinase XerD [Neisseria meningitidis M04-240196] Length = 291 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 117/233 (50%), Gaps = 11/233 (4%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R+LS K ++++ I T++ ++ K ++P + E+Q L+ T Sbjct: 66 SQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLATPDTDTP 125 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 H R+ A+L L+Y GLR+SEA+ L N+ D+ + GKGDK R+VP+ Sbjct: 126 H-----GLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQES 180 Query: 207 RKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + YY + P L LF + ++ + +++ G+ + H+L Sbjct: 181 AYWVERYYTEARPLLLKGRNCDALFVSQKKTGISRQLAWMIVKEYASQAGIG-HISPHSL 239 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 RH+FATHL+ +G DLR +Q +LGH L+TTQIYT+V + W+ + + H Sbjct: 240 RHAFATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVANV----WLQGVVKEHH 288 >gi|332295804|ref|YP_004437727.1| Tyrosine recombinase xerC [Thermodesulfobium narugense DSM 14796] gi|332178907|gb|AEE14596.1| Tyrosine recombinase xerC [Thermodesulfobium narugense DSM 14796] Length = 298 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 83/285 (29%), Positives = 138/285 (48%), Gaps = 11/285 (3%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L L+ + S T+++Y D + FL ++ + I +L+Y + I + Sbjct: 10 DFLDYLQFSKLCSNNTIRAYRSDLISWFEFLK-NSKNNLNELEITKLTYDWL---IEDQN 65 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 ++ + S+ R +S +KSFL YL K + L ++N KK LP+ LN V Sbjct: 66 SKLLKKSSVSRKISAVKSFLNYLYKFNVINNKLSLTLKNPKKDRILPKYLNYSD----VA 121 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 +V+ + + RNS I+ LL+ G+RISE ++ ++I D++ +R+ GKG+K R+ Sbjct: 122 DVINKNFTSSNFYSFRNSLIILLLFNTGIRISELKNIKLEDINLDRNEIRVIGKGNKERV 181 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 V + K L+ Y L + ++ + + RYI S Sbjct: 182 V-FFTNFTKNFLKQYITERLKLKTKCRYLFISRLKSRISERMI--RYIVSNTWKTQTGKS 238 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 T H LRHS AT LL+ G +L+ IQ ILGH ++TT IY + K Sbjct: 239 ITPHQLRHSLATFLLNQGVELKYIQEILGHENINTTNIYAKLTEK 283 >gi|325673461|ref|ZP_08153152.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707] gi|325555482|gb|EGD25153.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707] Length = 313 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 89/324 (27%), Positives = 142/324 (43%), Gaps = 28/324 (8%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 + LP ++ L ++ + L +ERG S+ T+++Y D L FL + + + Sbjct: 8 SQLPPLLRMHL----DDYDEYLRLERGRSEHTVRAYRADVAGLLGFLCRDRPDAV----L 59 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 L +RA+++ + +L R S K F + ++ + + K Sbjct: 60 ADLDLRVLRAWLAAQAAAGTARTTLARRTSSAKGFTAWAERTGRMPVDPGIRLVAPKAHR 119 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 +LP L ++QA + + E + R+ I+ LLY G+R+ E L +I Sbjct: 120 TLPPVLRQEQAAEAMVAAESGAAQEDP-VAVRDRLIVELLYSTGIRVGELCGLDLGDIDH 178 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 D+ LR+ GKGDK R+VP AI + + +L R L Sbjct: 179 DRRVLRVLGKGDKERVVPFGRPAEDAIGAWL------RSGRPELVNERSGDALLLGRRGG 232 Query: 244 QRYIRQLRRYL--------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 + RQ R + G P H LRHS ATHLL G DLR +Q +LGH L+TT Sbjct: 233 RLDQRQARAVVHDVVQAVPGAP-DLAPHGLRHSAATHLLEGGADLRVVQELLGHSSLATT 291 Query: 296 QIYTNVNSKNGGDWMMEIYDQTHP 319 Q+YT+V+ + ++DQ HP Sbjct: 292 QLYTHVSVAR----LRAVHDQAHP 311 >gi|153805941|ref|ZP_01958609.1| hypothetical protein BACCAC_00181 [Bacteroides caccae ATCC 43185] gi|149130618|gb|EDM21824.1| hypothetical protein BACCAC_00181 [Bacteroides caccae ATCC 43185] Length = 293 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 81/307 (26%), Positives = 147/307 (47%), Gaps = 25/307 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L L ER S+ T+ +Y D +Q L + +E+ ++ IR +I Sbjct: 4 KSFLDYLRYERNYSEKTVLAYSEDIKQ----LQEFAQEEYGRFNPLEVEAELIREWIVSL 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S+ R LS ++SF KYL ++ T+ + + K LP L E + L+ Sbjct: 60 MDRGYTSTSVNRKLSSLRSFYKYLLRQGEVTKDPLCKITGPKNKKPLPVFLKESEMNKLL 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D T + R+ I+ + Y G+R+SE + L +++ S L++ GK +K R Sbjct: 120 D----ETDFGEGFKGYRDRLIIEVFYATGIRLSELIGLDDKDVDFSASLLKVTGKRNKQR 175 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPG-VFQRYIRQLRR 252 ++P +R+ +L Y ++ N +P F G+ L V+ R L + Sbjct: 176 LIPFGDELRELMLGYINIR------NEMIPERSEAFFVRENGERLYKNLVYNLVKRNLSK 229 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 + L + H LRH+FAT +L+N +L +++ +LGH ++TT+IYT+ + + + Sbjct: 230 VVTLK-KRSPHVLRHTFATTMLNNDAELGAVKELLGHESIATTEIYTHATFEE----LKK 284 Query: 313 IYDQTHP 319 +Y Q HP Sbjct: 285 VYKQAHP 291 >gi|332653284|ref|ZP_08419029.1| tyrosine recombinase XerC [Ruminococcaceae bacterium D16] gi|332518430|gb|EGJ48033.1| tyrosine recombinase XerC [Ruminococcaceae bacterium D16] Length = 342 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 89/315 (28%), Positives = 153/315 (48%), Gaps = 38/315 (12%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF----------YTE---EKITIQTIRQ 65 +++L E +G S+ T+ Y D R F FL + E + + + +R Sbjct: 13 RDFLVYHETIQGHSRATVDEYFLDLRSFFRFLKLDKGRVAKDTPFDEISIDDVDLDLVRG 72 Query: 66 LSYTEIRAF---ISKRRTQKIGDRSLKRSLSGIK---------SFLKYLK-KRKITTESN 112 ++ +++ A+ +S+ R L+ SF KYL K K+ TE+ Sbjct: 73 VTLSDVYAYMNYLSRDRAVHPNSSDAHYGLAPAARARKAAAIRSFYKYLSSKAKLITENP 132 Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172 + ++ + +LPR LN +++ L+ SH R+ IL L CGLRISE Sbjct: 133 MQDLDAPRLKKTLPRYLNLDESVELL-------SHVDGPNQVRDYCILTLFLNCGLRISE 185 Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232 + L ++ DQ LR+ GKG+K R++ L + R A+ ++ + L L Q LF Sbjct: 186 LIGLNVTDVRGDQ--LRVLGKGNKERVLFLNEACRSALDDWM-MERSTLTLLDQNALFVT 242 Query: 233 IRGKP-LNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHF 290 R + + + +++ GL + ++H LRH+ AT +L NG D+R++Q +LGH Sbjct: 243 PRNRQRITRAAVHKLVKKHLSAAGLDSTKYSSHKLRHTAATLMLQNGVDVRTLQEVLGHD 302 Query: 291 RLSTTQIYTNVNSKN 305 L+TTQIYT+V++ + Sbjct: 303 HLNTTQIYTHVDNDD 317 >gi|300741219|ref|ZP_07071240.1| tyrosine recombinase XerD [Rothia dentocariosa M567] gi|300380404|gb|EFJ76966.1| tyrosine recombinase XerD [Rothia dentocariosa M567] Length = 320 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 72/252 (28%), Positives = 116/252 (46%), Gaps = 24/252 (9%) Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 +G S+ R+++ ++ + +I ++ K LP+A++ +Q L+ Sbjct: 72 LGPNSIARTMAAVRGAHSFWHASRILETDPAAAVKPPKNVKRLPKAVSVEQMQKLLAIPS 131 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM------DDQST-------LR 189 L T RN AIL LY G R+SE L+ +I D+ +R Sbjct: 132 LKTP-----TGLRNRAILEFLYATGARVSEMLATDLDDIHLGEKPRDENGEFIAVPGYVR 186 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 + GKG K R+VPL ++A+ +Y F + LF RG L + Sbjct: 187 LFGKGGKERLVPLGSYAQRALEDYIVRARPKFASHGKGTAALFLNGRGSRLGRQGAWLIL 246 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 ++ GL + H++RHSFATHL+ G D+R +Q +LGH ++TTQ+YT V + Sbjct: 247 KETAEEAGLSSDFSPHSIRHSFATHLVQGGADIRVVQELLGHASIATTQVYTKVTPEG-- 304 Query: 308 DWMMEIYDQTHP 319 M+E+Y HP Sbjct: 305 --MLEVYRMAHP 314 >gi|120435586|ref|YP_861272.1| phage integrase family protein [Gramella forsetii KT0803] gi|120435706|ref|YP_861392.1| phage integrase family protein [Gramella forsetii KT0803] gi|117577736|emb|CAL66205.1| phage integrase family protein [Gramella forsetii KT0803] gi|117577856|emb|CAL66325.1| phage integrase family protein [Gramella forsetii KT0803] Length = 337 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 86/310 (27%), Positives = 142/310 (45%), Gaps = 28/310 (9%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKI------TIQTIRQLSYTEIRAFISKRRTQ 81 ERG S T+ +Y DT F++ L F +EK+ T+ I++ + E +I K R Sbjct: 21 ERGASVNTITAYR-DT--FVLLLDFIEKEKLLKVEKLTLAKIKKETIIEFLDWIQKER-- 75 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD-- 139 K D + L+ I SF +YL+ N+ N+ +K S+ K+++T + Sbjct: 76 KCSDSTRNMRLAAIHSFYRYLQY------ENLDNLHECQKVLSIRSKKTRKESITYLSIE 129 Query: 140 --NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDK 196 +LL T R+ A+L L Y G R+ E + LTP + + ++I GKG++ Sbjct: 130 GIRLLLQQPDTTTTRGRRDLALLSLTYDTGARVQEIIDLTPSRLRLGKPPVIKIIGKGNR 189 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG----VFQRYIRQLRR 252 +R+VP+L + + Y + D PLF R + + +Y+ R+ Sbjct: 190 VRLVPMLDAQIIHLKNYMEEHRLDQPTANIHPLFFNSRKEKFTRAGINHILHKYMDMARK 249 Query: 253 YLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 +P + H+ RHS A HLL G +L I+ ILGH + TT+IY +S+ + Sbjct: 250 ADNTLIPDKASCHSFRHSKAMHLLQAGVNLVYIRDILGHVSVQTTEIYARADSRQKRKAL 309 Query: 311 MEIYDQTHPS 320 Y +P Sbjct: 310 ENAYVDINPD 319 >gi|213417883|ref|ZP_03350981.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 186 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 91/165 (55%), Gaps = 6/165 (3%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ A+L ++YG GLR+SE + L +++ D + + GKG K R +P+ + I + Sbjct: 22 RDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVTWIEHWL 81 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 DL L + + LF GK ++ Q+ + GL H LRHSFATH+L Sbjct: 82 DLRG--LFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHML 139 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + GDLR +Q +LGH LSTTQIYT+++ ++ + +YD HP Sbjct: 140 ESSGDLRGVQELLGHANLSTTQIYTHLDFQH----LASVYDAAHP 180 >gi|298386165|ref|ZP_06995722.1| tyrosine recombinase XerC [Bacteroides sp. 1_1_14] gi|298261393|gb|EFI04260.1| tyrosine recombinase XerC [Bacteroides sp. 1_1_14] Length = 293 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/301 (25%), Positives = 144/301 (47%), Gaps = 13/301 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L L ER S+ T+ +Y D +Q L + +E+ ++ IR +I Sbjct: 4 KSFLDYLRYERNYSEKTVLAYGEDIKQ----LQEFAQEEYGKFDPLEVEGELIREWIVSL 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S+ R LS ++SF KYL ++ T + + K LP L E + L+ Sbjct: 60 MDRGYTSTSVNRKLSSLRSFYKYLLRQGEVTVDPLRKITGPKNKKPLPVFLKENEMDKLL 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D+ T + R+ I+ + Y G+R+SE + L +++ S L++ GK +K R Sbjct: 120 DD----TDFGEGFKGCRDRLIIEMFYATGMRLSELIGLDDKDVDFSASLLKVTGKRNKQR 175 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 ++P +++ +LEY ++ + + + G+ V+ R L + L Sbjct: 176 LIPFGDELKELMLEYINVRNEAIPERSKAFFIKEDGGRLYKNLVYNLVKRNLSKVATLK- 234 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + H LRH+FAT +L+N +L +++ +LGH ++TT+IY + + + ++Y Q H Sbjct: 235 KRSPHVLRHTFATTMLNNDAELGAVKELLGHESIATTEIYAHATFEE----LKKVYKQAH 290 Query: 319 P 319 P Sbjct: 291 P 291 >gi|161869695|ref|YP_001598862.1| integrase/recombinase [Neisseria meningitidis 053442] gi|161595248|gb|ABX72908.1| integrase/recombinase [Neisseria meningitidis 053442] Length = 291 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 117/233 (50%), Gaps = 11/233 (4%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R+LS K ++++ I T++ ++ K ++P + E+Q L+ T Sbjct: 66 SQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLATPDTDTP 125 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 H R+ A+L L+Y GLR+SEA+ L N+ D+ + GKGDK R+VP+ Sbjct: 126 H-----GLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQES 180 Query: 207 RKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + YY + P L LF + ++ + +++ G+ + H+L Sbjct: 181 AYWVERYYTEARPLLLKGRNCDALFVSQKKTGISRQLAWMIVKEYAGRAGIG-HISPHSL 239 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 RH+FATHL+ +G DLR +Q +LGH L+TTQIYT+V + W+ + + H Sbjct: 240 RHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANV----WLQGVVKEHH 288 >gi|169830964|ref|YP_001716946.1| phage integrase family protein [Candidatus Desulforudis audaxviator MP104C] gi|169637808|gb|ACA59314.1| phage integrase family protein [Candidatus Desulforudis audaxviator MP104C] Length = 283 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 78/275 (28%), Positives = 122/275 (44%), Gaps = 23/275 (8%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR-AFISKRRTQKIGDRS 87 RGLS T+ +Y R F + E ++ L + R ++K R + Sbjct: 11 RGLSVQTVGTYAAAVRAFAKWWEGTGGEAFDPASVSSLDVADYRRHLLNKNRKPA----T 66 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 + L + SF + + +R + S PR L ++ LV V H + Sbjct: 67 VNLHLDALSSFFSWAVSTGLALIDPTEGVRRVPGQKSSPRWLTRRELGALVRAVQKHGA- 125 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLP 204 +R+ A++ LL GLR+SEA+SL Q+ + + + + +GKG+K R VPL Sbjct: 126 ------SRDRALVALLLHAGLRVSEAVSLKVQDAVIRERSGHVAVRRGKGEKYREVPLNA 179 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 + RK I E+ D P L F G G P+ P Q+ +++L R G+ T H Sbjct: 180 TARKMIQEWLDGHPGGEYL------FPGRNGGPMTPRAVQKRLKELARLAGV--EVTPHK 231 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 LRH+F L+ G L + + GH L+TT YT Sbjct: 232 LRHTFCKMLVDAGESLDRVAVLAGHANLNTTARYT 266 >gi|14520598|ref|NP_126073.1| integrase/recombinase xerd [Pyrococcus abyssi GE5] gi|73920473|sp|Q9V1P5|XERCL_PYRAB RecName: Full=Probable tyrosine recombinase xerC-like gi|5457814|emb|CAB49304.1| xerC/D integrase/recombinase protein [Pyrococcus abyssi GE5] Length = 286 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 84/297 (28%), Positives = 148/297 (49%), Gaps = 35/297 (11%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDT-RQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 ++ER+ +++ IE + L L+ +T R + +++ + EE + L Sbjct: 1 MEEREERVRDDTIEEFATYLELEGKSRNTVRMYTYYISKFFEEGHSPTARDALR------ 54 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 F++K + + RSL + +K++ K+ +S ++ K +LP++L E++ Sbjct: 55 FLAKLKRKGYSTRSLNLVIQALKAYFKFE-----GLDSEAEKLKTPKMPKTLPKSLTEEE 109 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG- 192 +++ + ET LYG GLR+SE +L +++ + + ++G Sbjct: 110 VRRIIN------AAETLRDRLILLL----LYGAGLRVSELCNLRVEDVNFEYGVIVVRGG 159 Query: 193 KGDKIRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 KG K R+VP+ S+ I Y D P+ L +++ + R L+P R ++ Sbjct: 160 KGGKDRVVPISESLLSEIKRYLESRNDDSPY---LFVEM---KRKRKDKLSPKTVWRLVK 213 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + R G+ L T H LRHSFATH+L G D+R IQ +LGH LSTTQIYT V++K+ Sbjct: 214 KYGRKAGVEL--TPHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKH 268 >gi|323705319|ref|ZP_08116894.1| integrase family protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323535221|gb|EGB24997.1| integrase family protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 288 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 82/301 (27%), Positives = 146/301 (48%), Gaps = 20/301 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q ++ L+ E+ LS T++SY+ D QF+ +L E I + +++ I ++++ Sbjct: 6 QAFIDFLKNEKKLSDNTVESYKRDITQFIGYLK---ENNIEYYDVNKIT---IISYLNFL 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + + ++ R LS IKSF +YL K + + K +P L+ +Q V Sbjct: 60 KHKNMSQSTISRHLSSIKSFYQYLFMNKFIDKEPAYTLDAPKIEKKVPLTLSVEQ----V 115 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D +L H E R+ AIL +LY GL++SE +SL +++ + + I K K R Sbjct: 116 DKLLSH-EFENSEKGLRDKAILEVLYATGLKVSELISLHIKDV--NLNYGYIYCKSSKER 172 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +P+ S A+ Y + ++ LF +RG+PL + I++ + Sbjct: 173 FIPIGDSALNALQNYISV---RRKIDQDEFLFLNLRGEPLTRQGCWKIIKEYTNIVNPGF 229 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 T LR SFA H+L NG D+RS+Q ILG+ + + + ++ + E+Y ++H Sbjct: 230 DITPSILRKSFAKHMLENGADIRSVQEILGYKSFNQGDLISLISKSK----IKEVYKRSH 285 Query: 319 P 319 P Sbjct: 286 P 286 >gi|15676649|ref|NP_273793.1| integrase/recombinase XerD [Neisseria meningitidis MC58] gi|34223072|sp|Q9K068|XERD_NEIMB RecName: Full=Tyrosine recombinase xerD gi|7225980|gb|AAF41164.1| integrase/recombinase XerD [Neisseria meningitidis MC58] gi|325133733|gb|EGC56389.1| tyrosine recombinase XerD [Neisseria meningitidis M13399] gi|325140092|gb|EGC62621.1| tyrosine recombinase XerD [Neisseria meningitidis CU385] Length = 291 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 117/233 (50%), Gaps = 11/233 (4%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R+LS K ++++ I T++ ++ K ++P + E+Q L+ T Sbjct: 66 SQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLAAPDTDTP 125 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 H R+ A+L L+Y GLR+SEA+ L N+ D+ + GKGDK R+VP+ Sbjct: 126 H-----GLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQES 180 Query: 207 RKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + YY + P L LF + ++ + +++ G+ + H+L Sbjct: 181 AYWVERYYTEARPLLLKGRNCDALFVSQKKTGISRQLAWMIVKEYASQAGIG-HISPHSL 239 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 RH+FATHL+ +G DLR +Q +LGH L+TTQIYT+V + W+ + + H Sbjct: 240 RHAFATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVANV----WLQGVVKEHH 288 >gi|215412737|ref|ZP_03421449.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis 94_M4241A] gi|298526363|ref|ZP_07013772.1| integrase/recombinase xerC [Mycobacterium tuberculosis 94_M4241A] gi|298496157|gb|EFI31451.1| integrase/recombinase xerC [Mycobacterium tuberculosis 94_M4241A] Length = 298 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 83/304 (27%), Positives = 135/304 (44%), Gaps = 28/304 (9%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L ++ G S T ++Y D R FLA ++ L+ + +R++++ Sbjct: 12 LALQCGRSVHTRRAYLGDLRSLFAFLADRGS------SLDALTLSVLRSWLAATAGAGAA 65 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 +L R S +K+F + +R + ++ K +LP L + QAL + Sbjct: 66 RTTLARRTSAVKAFTAWAVRRVLLAGDPAARLQVPKVRRTLPAELRQDQALRAM-AAAES 124 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + + + R+ I+ LLY G+R+SE L +I +R+ GKG+K R VP Sbjct: 125 GAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTVPFGQ 184 Query: 205 SVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL--------G 255 A+ + D + L G RG+ L+ +RQ R + G Sbjct: 185 PAADALHAWLVDGRRALVTAESGHALLLGARGRRLD-------VRQARTAVHQTVAAVDG 237 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 P H LRHS ATHLL G DLR +Q +LGH L+TTQ+YT+V + +++ Sbjct: 238 AP-DMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVAR----LRAVHE 292 Query: 316 QTHP 319 + HP Sbjct: 293 RAHP 296 >gi|312135537|ref|YP_004002875.1| tyrosine recombinase xerd [Caldicellulosiruptor owensensis OL] gi|311775588|gb|ADQ05075.1| tyrosine recombinase XerD [Caldicellulosiruptor owensensis OL] Length = 291 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 81/302 (26%), Positives = 144/302 (47%), Gaps = 18/302 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + +L+ + S+ T+ SY D ++++ FL KI ++ Q T I IS + Sbjct: 5 EAFCDHLQRQNRFSQNTISSYLRDAKKYIEFL---DNMKIKLENTSQA--TLIAYIISMQ 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 ++ K + ++ R++ +K F +LK +KI I + K + P+ L + Sbjct: 60 KSGK-SNSTIARAIVSLKVFYDFLKTQKIIDIGKI-EIEPPKLEKNPPQILTRDEV---- 113 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL E R+ A+L LLY G+++SE ++L +I + + + K + R Sbjct: 114 -EKLLSCPKEDDIKGIRDKAMLELLYATGIKVSELINLNLDDINLEHGYIICKNKK-RDR 171 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 ++P+ A+ +Y P+ + LF G+ + F + ++ + + Sbjct: 172 VIPIGSYAISAVEKYLRYSRPYLAKSKDEEALFLNFNGERMTRQGFWKIVKFYAQSAEID 231 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T H LRHSFATHL+ NG D+R++Q +LGH +STTQ Y V + E+Y +T Sbjct: 232 KEITPHVLRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQV----ANVKLKEVYQKT 287 Query: 318 HP 319 HP Sbjct: 288 HP 289 >gi|29348151|ref|NP_811654.1| integrase, site-specific recombinase [Bacteroides thetaiotaomicron VPI-5482] gi|253569574|ref|ZP_04846984.1| integrase [Bacteroides sp. 1_1_6] gi|29340054|gb|AAO77848.1| integrase, site-specific recombinase [Bacteroides thetaiotaomicron VPI-5482] gi|251841593|gb|EES69674.1| integrase [Bacteroides sp. 1_1_6] Length = 293 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 77/306 (25%), Positives = 146/306 (47%), Gaps = 23/306 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L L ER S+ T+ +Y D +Q L + +E+ ++ IR +I Sbjct: 4 KSFLDYLRYERNYSEKTVLAYGEDIKQ----LQEFAQEEYGKFDPLEVEGELIREWIVSL 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S+ R LS ++SF KYL ++ T + + K LP L E + L+ Sbjct: 60 MDRGYTSTSVNRKLSSLRSFYKYLLRQGEVTVDPLRKITGPKNKKPLPAFLKESEMDKLL 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D+ T + R+ I+ + Y G+R+SE + L +++ S L++ GK +K R Sbjct: 120 DD----TDFGEGFKGCRDRLIIGVFYATGIRLSELIGLDDKDVDFSASLLKVTGKRNKQR 175 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRY 253 ++P +++ +LEY ++ N +P F G+ L + +++ Sbjct: 176 LIPFGDELKELMLEYINVR------NETIPERSEAFFVKEDGERLYKNLVYNLVKRNLSK 229 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 + + H LRH+FAT +L+N +L +++ +LGH ++TT+IYT+ + + ++ Sbjct: 230 VATLKKRSPHVLRHTFATTMLNNDAELGAVKELLGHESVATTEIYTHATFEE----LKKV 285 Query: 314 YDQTHP 319 Y Q HP Sbjct: 286 YKQAHP 291 >gi|160890772|ref|ZP_02071775.1| hypothetical protein BACUNI_03217 [Bacteroides uniformis ATCC 8492] gi|156859771|gb|EDO53202.1| hypothetical protein BACUNI_03217 [Bacteroides uniformis ATCC 8492] Length = 376 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 75/269 (27%), Positives = 128/269 (47%), Gaps = 42/269 (15%) Query: 61 QTIRQLSYTE--IRAFIS--KRRTQKIGDRSLK-----------------RSLSGIKSFL 99 +T+RQL Y+E +RA+ + K Q R+L+ R +S + L Sbjct: 100 ETLRQLRYSEHTVRAYTTYFKEFQQYFAGRNLRYIRLEEINAYIVHLIDTRGISSCQQNL 159 Query: 100 -----KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 K+ ++ + E ++ K+ +LP L++++ +++D D Sbjct: 160 RINSIKFYFEKVLGLERKCYEVKRAKRERTLPDVLSKEEIKSILDAT---------GPDI 210 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213 R + LLY GLRISE L L P +I +S +R+ QGKG K R L + + + EY Sbjct: 211 RLFCMFSLLYSAGLRISELLDLKPHDINVSRSLIRVRQGKGRKDRYTLLSKPLVRKLTEY 270 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 L Q LF +G+P + + +++ + G+ H LRHSFATHL Sbjct: 271 AKL------YKPQEWLFERYKGEPFTESIVSKKLKEAAKEAGITKRVYPHLLRHSFATHL 324 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + G DL+ ++ +LGH +L TT++Y +++ Sbjct: 325 IEQGTDLKIVKELLGHNQLKTTEMYVHIS 353 >gi|218767874|ref|YP_002342386.1| putative integrase/recombinase [Neisseria meningitidis Z2491] gi|34223068|sp|Q9JV76|XERD_NEIMA RecName: Full=Tyrosine recombinase xerD gi|121051882|emb|CAM08188.1| putative integrase/recombinase [Neisseria meningitidis Z2491] gi|319410121|emb|CBY90457.1| tyrosine recombinase XerD [Neisseria meningitidis WUE 2594] Length = 291 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 117/233 (50%), Gaps = 11/233 (4%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R+LS K ++++ I T++ ++ K ++P + E+Q L+ T Sbjct: 66 SQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLAAPDTDTP 125 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 H R+ A+L L+Y GLR+SEA+ L N+ D+ + GKGDK R+VP+ Sbjct: 126 H-----GLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQES 180 Query: 207 RKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + YY + P L LF + ++ + +++ G+ + H+L Sbjct: 181 AYWVGRYYTEARPALLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGIG-HISPHSL 239 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 RH+FATHL+ +G DLR +Q +LGH L+TTQIYT+V + W+ + + H Sbjct: 240 RHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANV----WLQGVVKEHH 288 >gi|238063996|ref|ZP_04608705.1| tyrosine recombinase xerD [Micromonospora sp. ATCC 39149] gi|237885807|gb|EEP74635.1| tyrosine recombinase xerD [Micromonospora sp. ATCC 39149] Length = 336 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 92/318 (28%), Positives = 144/318 (45%), Gaps = 28/318 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L +L +ERGLS TL SY D ++L L I + ++ + A +++ Sbjct: 26 RGYLDHLTVERGLSANTLASYRRDLERYLATL-----TDAGIGDLASVAAGVVEAHLARL 80 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R G L S + + R E L + + P V Sbjct: 81 RAGDDGHPPLAVSSAARAASAVRGLHRFALREG--LAGADPSRDVRPPAPPRRLPRALAV 138 Query: 139 DNV--LLHTSHE-TKWIDA-----RNSAILYLLYGCGLRISEALSLTPQNI--MD-DQST 187 D V LL T+ T D R+ A+L LYG G RISEA+ ++ +D ++T Sbjct: 139 DQVVRLLETAGPVTAAGDGAPLALRDRALLEFLYGTGARISEAVGAAIDDLDGLDTGEAT 198 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLP-LFRGIRGKPLNPGVFQR 245 + ++GKG + R+VP+ +A+ + P + P +F +RG L Sbjct: 199 VLLRGKGGRSRLVPVGGYAAEALRAWLVRGRPALVAAGRGTPAVFVNVRGGTLTRQGAWT 258 Query: 246 YIRQLRRYLGLPL----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +R+ GLP+ + + HTLRHSFATHLL G D+R +Q +LGH ++TTQ+YT V Sbjct: 259 ILRRAAERAGLPVDGANAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLV 318 Query: 302 NSKNGGDWMMEIYDQTHP 319 + + E+Y HP Sbjct: 319 TVER----LREVYATAHP 332 >gi|317504008|ref|ZP_07962015.1| tyrosine recombinase XerD [Prevotella salivae DSM 15606] gi|315664868|gb|EFV04528.1| tyrosine recombinase XerD [Prevotella salivae DSM 15606] Length = 293 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 76/287 (26%), Positives = 136/287 (47%), Gaps = 21/287 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L+ ER S LT+++Y D R F F +LS+ + + + + Sbjct: 6 FLNYLKFERNRSDLTIKNYGEDLRAFEEFYG---------NLDSRLSWKSVDSDVIRDWM 56 Query: 81 QKIGDR-----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 + + D+ S+ R LS ++SF ++ RK+ ++ + + KK LP+ L E + Sbjct: 57 ESMMDKGNNATSINRRLSALRSFYRFALTRKLVDKNPVHGVTGPKKGRPLPQFLKENEMD 116 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L+D S E D R+ ++ Y G+R+SE + L + L++ GK + Sbjct: 117 RLLDAESWTESFE----DVRDRTVIMTFYETGIRLSELIGLDDSMVDFSNRQLKVTGKRN 172 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQLRRYL 254 K R++P + + +Y ++N + LF +G+ + + + R L + Sbjct: 173 KQRVIPFGEELLVTLRDYMKCRDKEVNRQSE-ALFVSTKGQRMTSSQVREGVKRNLSKVC 231 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 L T H LRH+FAT +L+N + S++ +LGH LSTT+IYT+ Sbjct: 232 TLK-KRTPHVLRHTFATAMLNNKAGIESVKKLLGHESLSTTEIYTHT 277 >gi|160934248|ref|ZP_02081635.1| hypothetical protein CLOLEP_03119 [Clostridium leptum DSM 753] gi|156866921|gb|EDO60293.1| hypothetical protein CLOLEP_03119 [Clostridium leptum DSM 753] Length = 309 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 85/307 (27%), Positives = 142/307 (46%), Gaps = 27/307 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q++L+N ++ +S TLQSY D F I+LA I ++ +++ +I Sbjct: 19 QDYLKN---QKCVSSNTLQSYVRDIEHFSIYLAAEN-----IDNPASVTADDLQHYIESL 70 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 ++ R+++ I+ F +YL I +E+ ++ K P L ++ L+ Sbjct: 71 EKLGRSASTVTRNIASIRCFYQYLILINIASENPAKEIKREKTEKKPPSILTGEEIRLLL 130 Query: 139 D--NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGD 195 D NV+ + K R+ A++ LLY G+R+SE + L Q+I L + K D Sbjct: 131 DQPNVM-----DPKG--CRDKAMIELLYATGIRVSELIDLNLQDINLKTGMLHCRRPKSD 183 Query: 196 KIRIVPLLPSVRKAILEYYDLCP---FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 RI+P+ ++ +Y D LF + G L F + I+ Sbjct: 184 --RIIPIYAEAVASLSDYISRVRRIIIDPVGKDGQALFVNLNGHRLTRQGFWKIIKGYAA 241 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 + T HTLRHSFA HLL NG DL+ IQ +LGH +++TQ+Y N+ + + Sbjct: 242 QARITKDITPHTLRHSFALHLLQNGADLKDIQEMLGHADIASTQVYANLLN----NRFQN 297 Query: 313 IYDQTHP 319 +Y+ HP Sbjct: 298 VYNHCHP 304 >gi|319406365|emb|CBI80006.1| integrase/recombinase XerD [Bartonella sp. AR 15-3] Length = 312 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 86/318 (27%), Positives = 149/318 (46%), Gaps = 34/318 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY--TEIRAFISKR 78 +L+ + ERG S TL +Y+ D + + + K++ ++I S ++ +S Sbjct: 10 FLEMMSAERGASVRTLLAYQHDLQ--------WAQNKLSSRSISFFSAQREDLINLLSLM 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S R LS ++ F ++L + + ++ + ++ LP+ ++E L+ Sbjct: 62 QIAGCAATSQARRLSTLRQFFQFLYAEGLREDDPSNDIDSPRQGRPLPKIISEDAVTKLL 121 Query: 139 DNVLLHTSH-----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 D L T + + R L +LY GLRISE +SL Q + ++ + ++GK Sbjct: 122 DFAQLETDQAEYGSQNYYRALRLWVFLEMLYATGLRISELVSLPVQAVRRKEAFILVRGK 181 Query: 194 GDKIRIVPLLPSVRKAILEYY-------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 G K R+V + R+ + ++ D F L P R G V R Sbjct: 182 GGKERVVLVSEKARQVLSQWLILRDQGKDATSFYL-----FPA-RSSTGYIARQFV-ARG 234 Query: 247 IRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 ++ L + G+ + H LRH+FA+HLL NG DLR++Q +LGH +STTQIYT+V Sbjct: 235 LKDLAKRAGIQSENFSPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQIYTHVLEAR 294 Query: 306 GGDWMMEIYDQTHPSITQ 323 + + ++ HP I Q Sbjct: 295 ----LHRLVNEHHPLIDQ 308 >gi|311113293|ref|YP_003984515.1| tyrosine recombinase XerD [Rothia dentocariosa ATCC 17931] gi|310944787|gb|ADP41081.1| tyrosine recombinase XerD [Rothia dentocariosa ATCC 17931] Length = 391 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 72/252 (28%), Positives = 116/252 (46%), Gaps = 24/252 (9%) Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 +G S+ R+++ ++ + +I ++ K LP+A++ +Q L+ Sbjct: 143 LGPNSIARTMAAVRGAHSFWHASRILETDPAAAVKPPKNVKRLPKAVSVEQMQKLLAIPS 202 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM------DDQST-------LR 189 L T RN AIL LY G R+SE L+ +I D+ +R Sbjct: 203 LKTP-----TGLRNRAILEFLYATGARVSEMLATDLDDIHLGEKPRDENGESIAVPGYVR 257 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 + GKG K R+VPL ++A+ +Y F + LF RG L + Sbjct: 258 LFGKGGKERLVPLGSYAQRALEDYIVRARPKFASHGKGTAALFLNGRGSRLGRQGAWLIL 317 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 ++ GL + H++RHSFATHL+ G D+R +Q +LGH ++TTQ+YT V + Sbjct: 318 KETAEEAGLSSDFSPHSIRHSFATHLVQGGADIRVVQELLGHASIATTQVYTKVTPEG-- 375 Query: 308 DWMMEIYDQTHP 319 M+E+Y HP Sbjct: 376 --MLEVYRMAHP 385 >gi|168185133|ref|ZP_02619797.1| tyrosine recombinase [Clostridium botulinum Bf] gi|182671818|gb|EDT83779.1| tyrosine recombinase [Clostridium botulinum Bf] Length = 327 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 114/224 (50%), Gaps = 24/224 (10%) Query: 90 RSLSGIKSFLKYLK-KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 R ++ +KSF YLK K KI + N+ K+ P L+ K++ L+D V + Sbjct: 97 RKVAVLKSFFNYLKNKVKIIELNPTKNLETPKRPKRQPVYLSLKESEMLLDAVKIKNGRN 156 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 + R+ AI+ L CGLR+SE ++ I +D TL I GKGDK R + L S K Sbjct: 157 KE----RDYAIITLFLNCGLRLSELCNIKLSYIRND--TLIITGKGDKQRTIYLNNSCLK 210 Query: 209 AILEYYDLCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 AI EY LN+ +L LF R + +N QR +++ Y GL Sbjct: 211 AINEY-------LNVRNKLKNIKDKDSDYLFLSERKQKINKRSVQRIVQKFIEYAGLDKK 263 Query: 260 TTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVN 302 T H LRH+ AT L G D+R++Q ILGH +STT IYT+V+ Sbjct: 264 YTVHKLRHTAATLLYKYGEVDIRNLQVILGHENISTTTIYTHVD 307 >gi|308388941|gb|ADO31261.1| putative integrase/recombinase [Neisseria meningitidis alpha710] Length = 291 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 117/233 (50%), Gaps = 11/233 (4%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R+LS K ++++ I T++ ++ K ++P + E+Q L+ T Sbjct: 66 SQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLATPDTDTP 125 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 H R+ A+L L+Y GLR+SEA+ L N+ D+ + GKGDK R+VP+ Sbjct: 126 H-----GLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQES 180 Query: 207 RKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + YY + P L LF + ++ + +++ G+ + H+L Sbjct: 181 AYWVGRYYTEARPALLKGRSCDALFVSQKKTGISRQLAWMIVKEYAGRAGIG-HISPHSL 239 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 RH+FATHL+ +G DLR +Q +LGH L+TTQIYT+V + W+ + + H Sbjct: 240 RHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANV----WLQGVVKEHH 288 >gi|160883082|ref|ZP_02064085.1| hypothetical protein BACOVA_01050 [Bacteroides ovatus ATCC 8483] gi|156111554|gb|EDO13299.1| hypothetical protein BACOVA_01050 [Bacteroides ovatus ATCC 8483] Length = 293 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 77/301 (25%), Positives = 145/301 (48%), Gaps = 13/301 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L L+ ER S+ T+ +Y D +Q L + +E+ ++ IR +I Sbjct: 4 ESFLDYLQYERNYSEKTVLAYGEDIKQ----LQEFAQEEYGKFNPLEVEAELIREWIVSL 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S+ R LS +++F KYL ++ TT + ++ K LP L E + L+ Sbjct: 60 MDKGYTSTSVNRKLSSLRTFYKYLLRQGETTIDPLRKIKGPKNKKPLPVFLKENEMNRLL 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D T + R+ I+ + Y G+R+SE + L +++ S L++ GK +K R Sbjct: 120 D----ETDFGEGFKGCRDRLIIEVFYATGMRLSELIGLDNKDVDFSASLLKVTGKRNKQR 175 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 ++P +++ +LEY ++ + + R + V+ R L + L Sbjct: 176 LIPFGDELQELMLEYINVRNETIPERSEAFFIRENGERLYKNLVYNLVKRNLSKVATLK- 234 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + H LRH+FAT +L+N +L ++ +LGH ++TT+IYT+ + + ++Y Q H Sbjct: 235 KKSPHVLRHTFATTMLNNEAELGVVKELLGHESITTTEIYTHATFEE----LKKVYKQAH 290 Query: 319 P 319 P Sbjct: 291 P 291 >gi|254451038|ref|ZP_05064475.1| phage integrase [Octadecabacter antarcticus 238] gi|198265444|gb|EDY89714.1| phage integrase [Octadecabacter antarcticus 238] Length = 317 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 59/149 (39%), Positives = 82/149 (55%), Gaps = 4/149 (2%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC 217 +L L YGCG+R E + L +I Q +RI Q KG K R V L + + E++ Sbjct: 146 MLSLAYGCGMRAGEVVRLKVGDIDSAQKIIRIVQAKGRKDRNVMLPSDILGMLREWWKER 205 Query: 218 PFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 P + ++ P LF G RGK L+ R ++ R G+ T HTLRHSFATHLL Sbjct: 206 PTGQDKDLPTPERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHTLRHSFATHLL 265 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 G D+R IQ++LGH +L+TT Y +V + Sbjct: 266 ERGVDIRVIQALLGHSKLTTTARYASVAT 294 >gi|332977095|gb|EGK13899.1| integrase-recombinase [Desmospora sp. 8437] Length = 330 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 90/318 (28%), Positives = 147/318 (46%), Gaps = 58/318 (18%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--------------------------RQ 65 S+ T+ +Y D F +F F E+++ ++++ R Sbjct: 7 SRQTIANYAYD---FALFFDFLKEKEVDLESVTPRMLRRFFRHIENGYERTVWVSVKKRD 63 Query: 66 LSYTEIRAFISKRRTQKIGDRSLK-RSLSGIKSFLKYLKKRKI-------TTESNILNMR 117 S E+ + R+ + R+ K R S ++S +YL K + E L R Sbjct: 64 PSTGEVTESLVPRKHFRENTRAGKERKRSSLRSLFRYLVKNDVLDKDPMQEYEDATLKAR 123 Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETK----WIDARNSAILYLLYGCGLRISEA 173 N K+ +P L +AL L++ + + + + W +AR+ A++ +L G+R+SE Sbjct: 124 NRKR---VPVFLTRDEALRLIEAIGSYHQKQKRRRFAWYEARDRAMILILLNTGMRVSEL 180 Query: 174 LSLTPQNIMDDQSTLRI--QGKGDKIRIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLF 230 + L NI D + R+ GKG K R++ L P+ + Y +L P + + Q LF Sbjct: 181 VGLNLNNIQSDGVSARVIVLGKGGKERMLKLNPAAYTGLRRYMELRPEEGVPPEHQQALF 240 Query: 231 -RGIRGKPLNPGV---FQRYIRQLRRYLGLP---LSTTAHTLRHSFATHLLSNGGDLRSI 283 R + GV Q+Y+R+ LP + + H LRH+ AT LLSNG +LR + Sbjct: 241 LNKNRTRMSRKGVSEALQKYVREA----NLPPKAANISPHKLRHTLATLLLSNGENLRVV 296 Query: 284 QSILGHFRLSTTQIYTNV 301 Q ILGH + TTQIYT+V Sbjct: 297 QEILGHSSIQTTQIYTHV 314 >gi|312139234|ref|YP_004006570.1| tyrosine recombinase xerc [Rhodococcus equi 103S] gi|311888573|emb|CBH47885.1| tyrosine recombinase XerC [Rhodococcus equi 103S] Length = 313 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 86/308 (27%), Positives = 136/308 (44%), Gaps = 24/308 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++ + L +ERG S+ T+++Y D L FL + + + L +RA+++ + Sbjct: 20 DYDEYLRLERGRSEHTVRAYRADVAGLLGFLCRDRPDAV----LADLDLRVLRAWLAAQA 75 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 +L R S K F + ++ + + K +LP L ++QA + Sbjct: 76 AAGTARTTLARRTSSAKGFTAWAERTGRMPVDPGIRLVAPKAHRTLPPVLRQEQAAEAMV 135 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + E + R+ I+ LLY G+R+ E L +I D+ LR+ GKGDK R+ Sbjct: 136 AAESGAAQEDP-VAVRDRLIVELLYSTGIRVGELCGLDLGDIDHDRRVLRVLGKGDKERV 194 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL----- 254 VP AI + + +L R L + RQ R + Sbjct: 195 VPFGRPAEDAIGAWL------RSGRPELVNERSGDALLLGRRGGRLDQRQARAVVHDVVQ 248 Query: 255 ---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 G P H LRHS ATHLL G DLR +Q +LGH L+TTQ+YT+V+ + Sbjct: 249 AVPGAP-DLAPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVSVAR----LR 303 Query: 312 EIYDQTHP 319 ++DQ HP Sbjct: 304 AVHDQAHP 311 >gi|281422267|ref|ZP_06253266.1| integrase/recombinase XerD [Prevotella copri DSM 18205] gi|281403772|gb|EFB34452.1| integrase/recombinase XerD [Prevotella copri DSM 18205] Length = 294 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 66/234 (28%), Positives = 119/234 (50%), Gaps = 11/234 (4%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S+ R LS +K F ++ R +++ K+S LP+ L E + L+D + Sbjct: 69 SVNRRLSALKMFYRFALVRHYVESDPAHSLKGPKESKPLPQFLKENEMDELLDRKMWGDD 128 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 ++ + R I+ L Y G+R+SE + L ++ + ++I GKG+K RIVP + Sbjct: 129 YD----NVRARTIIILFYETGMRLSELIGLDVDDVNFIKKEIKITGKGNKQRIVPFGDEL 184 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ-LRRYLGLPLSTTAHTL 265 + A+ EY L + + L +G ++P + +++ L R L + H L Sbjct: 185 KNALSEYLTLRAQRVMVK-SGALLLADKGGRMSPVQVREIVKENLARVCSLK-KKSPHVL 242 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 RH+FAT +L++G + S++ +LGH +LSTT+IYT+ + + +Y + HP Sbjct: 243 RHTFATAMLNHGAGIESLKRLLGHAKLSTTEIYTHTTFEQ----LKRVYIEAHP 292 >gi|169823615|ref|YP_001691118.1| putative integrase [Finegoldia magna ATCC 29328] gi|167832235|dbj|BAG09150.1| putative integrase [Finegoldia magna ATCC 29328] Length = 359 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 91/314 (28%), Positives = 157/314 (50%), Gaps = 35/314 (11%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFL--IFLAFYTEEKITIQT--------------I 63 N++++L + LSK T+ Y F +FL FY + I T Sbjct: 32 NYVKDLYVMYNLSKHTIIDYFSLITIFTKKMFLTFYEKPYYDIITGKYDEHYLSIDEKFY 91 Query: 64 RQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122 Q+ + F+++ + ++ + + S+ + +KSF YL++ ++N+ N+R K Sbjct: 92 EQVEKRHVNDFLAELKLERNLKESSVITKIRQLKSFYSYLEEH-YDIKNNVKNIRIPKAE 150 Query: 123 NSLPRALNEKQALTLVD----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178 +LP L ++A++LV+ ++ H +TKWI RN ++ +L C LR SE S+ Sbjct: 151 KNLPVYLTLEEAVSLVNVVDKDIEQHKGTKTKWICVRNKCMIVMLLNCALRRSELRSINI 210 Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL------FRG 232 ++I +D + + GKG K R + L +++I +Y + P D N L + + Sbjct: 211 EDIKEDY--IIVMGKGAKERTIYLNDLTKQSINDYLRVRPKDAKDNKALFITKNKHTYSR 268 Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFR 291 I + + V ++Y+R+ L L +T H LRH+ AT + +G DLRS+Q ILGH Sbjct: 269 ISCERIG-DVVKKYLREAN--LNDQLFST-HKLRHTSATLMYQHGNVDLRSLQQILGHAS 324 Query: 292 LSTTQIYTNVNSKN 305 TT+IYT+V KN Sbjct: 325 SKTTEIYTHVYDKN 338 >gi|261364728|ref|ZP_05977611.1| tyrosine recombinase XerD [Neisseria mucosa ATCC 25996] gi|288567026|gb|EFC88586.1| tyrosine recombinase XerD [Neisseria mucosa ATCC 25996] Length = 291 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 82/286 (28%), Positives = 137/286 (47%), Gaps = 26/286 (9%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFL--AFYTEEKITIQTIRQLSYTEIRAFISKRR 79 L++L ++ LS TLQ Y D + L YT + + Y A K Sbjct: 10 LESLWLQDRLSHNTLQGYRRDLEKIAARLEEGGYTWLNAEVADLADAVY----AADEKHS 65 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 +Q R+LS K +L++ + T++ ++ K++ LP + E Q L+ Sbjct: 66 SQA-------RALSACKRLYAWLEETERRTDNPTRFLKAPKQTQKLPTLITEAQIEKLLA 118 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 T H R+ A+L ++Y GLR++EA+ L ++ ++ +R GKGDK+RI Sbjct: 119 APDTETPH-----GLRDKALLEVMYATGLRVTEAVKLQLGDLDLNRGCIRTIGKGDKLRI 173 Query: 200 VPLLPSVRKAILEYYDLC----PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 VP+ + Y C P L I +F + ++ + ++ G Sbjct: 174 VPMGEEAVYWVERY---CAESRPLLLKNKICDEVFVSQKRSGISRQLAWMIVKNYAETAG 230 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + S + H LRH+FATHL+++G DLR++Q +LGH ++TTQIYT+V Sbjct: 231 IT-SLSPHGLRHAFATHLVNHGVDLRAVQLMLGHANINTTQIYTHV 275 >gi|237711657|ref|ZP_04542138.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA] gi|237725901|ref|ZP_04556382.1| tyrosine type site-specific recombinase [Bacteroides sp. D4] gi|265753077|ref|ZP_06088646.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA] gi|229435709|gb|EEO45786.1| tyrosine type site-specific recombinase [Bacteroides dorei 5_1_36/D4] gi|229454352|gb|EEO60073.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA] gi|263236263|gb|EEZ21758.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA] Length = 293 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 83/307 (27%), Positives = 150/307 (48%), Gaps = 25/307 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++L L ER S+ T+ SY D +F ++ +E + T+ +R ++ Sbjct: 4 DSFLDYLRFERNYSEKTIVSYGIDLIKFEEYIR-GKDENVDFTTV---DADLVRGWVMNL 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S+ R LS ++SF ++L K+ + E +L + K LP L E++ L+ Sbjct: 60 IEDGYTSASVNRKLSSLRSFYRFLLKKGVIGEDPMLKIIGPKNKKPLPVFLKEREMDRLL 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D+V + + R+ +L + Y G+R+SE + L ++ S +++ GK +K R Sbjct: 120 DDV----PFKEDFTGCRDRMVLEMFYATGMRLSELIGLNDVDVDFSASLIKVTGKRNKQR 175 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPG-VFQRYIRQLRR 252 ++P +R+A+ Y + N LP F GK + PG V+ R L + Sbjct: 176 LIPFGEELRRAMFVYLKIR------NEVLPGKAGAFFVLKNGKRMYPGKVYLLVKRNLSK 229 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 + L + H LRH+FAT +L+N +L +++ +LGH L+TT+IYT+ + + + Sbjct: 230 VVSLK-KRSPHVLRHTFATAMLNNEAELGAVKELLGHSSLTTTEIYTHTTFEE----LKK 284 Query: 313 IYDQTHP 319 +Y+Q HP Sbjct: 285 VYEQAHP 291 >gi|222529770|ref|YP_002573652.1| tyrosine recombinase XerD [Caldicellulosiruptor bescii DSM 6725] gi|312622005|ref|YP_004023618.1| tyrosine recombinase xerd [Caldicellulosiruptor kronotskyensis 2002] gi|222456617|gb|ACM60879.1| tyrosine recombinase XerD [Caldicellulosiruptor bescii DSM 6725] gi|312202472|gb|ADQ45799.1| tyrosine recombinase XerD [Caldicellulosiruptor kronotskyensis 2002] Length = 291 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 82/301 (27%), Positives = 143/301 (47%), Gaps = 21/301 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 N+LQ + S+ T+ SY D ++++ FL + KI ++ Q T + A+I + Sbjct: 9 NYLQR---QNRFSQNTISSYLRDAKKYIEFL---DDIKIKLENTSQ---TTLIAYIISMQ 59 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + ++ R++ +K F ++LK + I I + K S P+ L + Sbjct: 60 KGGKSNSTIARAIVSLKVFYEFLKIQDIVDIGKI-EIEPPKLEKSPPQILTRDEV----- 113 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 LL E R+ A+L LLY G+R+SE ++L +I + + + K + R+ Sbjct: 114 ERLLSCPKEDDIKGIRDKAMLELLYATGIRVSELINLNLDDINLEHGYIICKNK-KRDRV 172 Query: 200 VPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +P+ A+ +Y P+ + LF G+ + F + ++ + + Sbjct: 173 IPIGSYAISAVEKYLRHSRPYLAKSKDEEALFLNFSGERMTRQGFWKIVKFYAQNAKIDK 232 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 T H LRHSFATHL+ NG D+R++Q +LGH +STTQ Y V + + E+Y +TH Sbjct: 233 EITPHVLRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVK----LKEVYQKTH 288 Query: 319 P 319 P Sbjct: 289 P 289 >gi|256840427|ref|ZP_05545935.1| tyrosine recombinase XerC [Parabacteroides sp. D13] gi|256737699|gb|EEU51025.1| tyrosine recombinase XerC [Parabacteroides sp. D13] Length = 374 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 75/268 (27%), Positives = 127/268 (47%), Gaps = 42/268 (15%) Query: 61 QTIRQLSYTE--IRAFIS--KRRTQKIGDRSLK-----------------RSLSGIKSFL 99 +T+RQL Y+E +RA+ + K Q R+L+ R +S + L Sbjct: 98 ETLRQLRYSEHTVRAYTAYFKEFQQYFAGRNLRYIRPEEINAYIVHLIDTRGISSCQQNL 157 Query: 100 -----KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 K+ ++ + E ++ K+ +LP L++++ +++D D Sbjct: 158 RINSIKFYFEKVLGQERKCYEVKRAKRERTLPDVLSKEEIKSILDAT---------GPDI 208 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213 R + LLY GLRISE L L P +I +S +R+ QGKG K R L + + + EY Sbjct: 209 RLFCMFSLLYSAGLRISELLDLKPHDINVSRSLIRVRQGKGRKDRYTLLSKPLVRKLTEY 268 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 L Q LF +G+P + + +++ + G+ H LRHSFATHL Sbjct: 269 TKL------YKPQEWLFERYKGEPFTESIVSKKLKEAAKEAGITKRVYPHLLRHSFATHL 322 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + G DL+ ++ +LGH +L TT++Y ++ Sbjct: 323 IEQGTDLKIVKELLGHNQLKTTEMYVHI 350 >gi|182417327|ref|ZP_02948665.1| tyrosine recombinase XerD [Clostridium butyricum 5521] gi|237668789|ref|ZP_04528773.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378835|gb|EDT76354.1| tyrosine recombinase XerD [Clostridium butyricum 5521] gi|237657137|gb|EEP54693.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 292 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 78/298 (26%), Positives = 145/298 (48%), Gaps = 25/298 (8%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 +E G S+ T+ +Y D ++L F +K+ I L+ + ++I Q +R Sbjct: 13 LESGKSENTIYAYVTDVT---LYLKFLNRKKVDIYKSDNLT---VASYIQNLLNQGKSER 66 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S+ R + +++F YLK + + E + ++ K + LP+ L ++ VD ++ Sbjct: 67 SINRIVISLRNFYSYLKSQSLIQEVPKIEYKSSKNNRKLPQILTIEE----VDKIIRIVE 122 Query: 147 HET-KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 + K I R++A+L L+Y G+++SE ++L +++ + + +R RI+P+ S Sbjct: 123 KDCPKGI--RDNALLELMYATGMKVSELINLNVEDVNLELNFVRCTDNKHYERIIPIGRS 180 Query: 206 VRKAILEY----YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 KA+ EY Y + ++ LF + G L R +++ R G+ Sbjct: 181 ACKALSEYLSIRYKIAQCGVS-----NLFVNLNGNKLTRQGIWRIVKEYSRKAGIDKDVN 235 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 +T RHSFA HLL NG ++R++Q +LG+ L+ Y + + D + IY THP Sbjct: 236 LNTFRHSFAVHLLQNGANVRAVQKLLGNQVLTYMDTYYEIIN---NDKINYIYMHTHP 290 >gi|266621718|ref|ZP_06114653.1| integrase/recombinase XerD [Clostridium hathewayi DSM 13479] gi|288866619|gb|EFC98917.1| integrase/recombinase XerD [Clostridium hathewayi DSM 13479] Length = 295 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 84/311 (27%), Positives = 150/311 (48%), Gaps = 23/311 (7%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 ++ E +++ L + SK T SY D L+ +A Y EE+ I + +++ T + + Sbjct: 1 MVTEINEFVKYLREVKKTSKNTEVSYHRD----LLQMASYLEEQ-GITDVEKVTKTSLNS 55 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEK 132 ++ + ++ R+L+ +K+F Y + +I + L ++ K P L + Sbjct: 56 YVLHLEKEGRATTTISRTLASMKAFFHYEYGEGRIRRDPAEL-IKAPKIEKKAPTILTVE 114 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ--NIMDDQSTLRI 190 + +L++ + E R+ A+L LLY G+R+SE + L + N+ T R Sbjct: 115 EVNSLLEQPTGDSPKEL-----RDKAMLELLYATGIRVSELIHLKVEDMNLAVGFITCRD 169 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIR 248 + K R++P R+A++ Y + L L Q LF G+P++ F + I+ Sbjct: 170 E---HKERMIPFGKVARQAMVNYMESGRASL-LKGQESEWLFTNCSGRPMSRQGFWKIIK 225 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 G+ T HTLRHSFA HLL NG D+ ++Q+++GH ++TTQ+Y N G+ Sbjct: 226 YYGEKAGIQADITPHTLRHSFAAHLLGNGADIHAVQAMMGHSDMATTQMYMNYTR---GE 282 Query: 309 WMMEIYDQTHP 319 + Y HP Sbjct: 283 AVRSAYAGAHP 293 >gi|154245579|ref|YP_001416537.1| integrase family protein [Xanthobacter autotrophicus Py2] gi|154159664|gb|ABS66880.1| integrase family protein [Xanthobacter autotrophicus Py2] Length = 354 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 80/311 (25%), Positives = 133/311 (42%), Gaps = 39/311 (12%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L IERG TL +Y D FLA + + + + IRA+++ Sbjct: 35 FLDMQAIERGGGPNTLDAYRRDLTDLAEFLAPVS--------LAEADTSAIRAYLADLSA 86 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + ++ R LS ++ F ++L + + K+ LP+ L+ + L+D Sbjct: 87 RGFAATTVARRLSALRQFYRFLFAEGHRADDPAAVLEGPKRGRPLPKVLSVAEVTRLIDT 146 Query: 141 VLLHTSHETKWIDA----------------------------RNSAILYLLYGCGLRISE 172 + + ++A R + ++ LLY GLR+SE Sbjct: 147 AHARAAQAEESLNAGQGGEGQGEETPGAGAAKAGRAELLRLRRVACMVELLYASGLRVSE 206 Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF-R 231 ++L + + GKG K R+VPL K ++ + L LF Sbjct: 207 LVALPAAAARAQGEAILVTGKGRKERLVPL-SGPAKVAMQAFLAARRAAGLEASRWLFPS 265 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290 G + R +++L GL P + H LRH+FA+HLL++G DLR +Q++LGH Sbjct: 266 GSESGHVTRQQAARDLKELALAAGLDPAKLSPHVLRHAFASHLLAHGADLRVVQTLLGHA 325 Query: 291 RLSTTQIYTNV 301 +STTQIYT+V Sbjct: 326 DVSTTQIYTHV 336 >gi|85373824|ref|YP_457886.1| integrase [Erythrobacter litoralis HTCC2594] gi|123099544|sp|Q2NB52|XERC_ERYLH RecName: Full=Tyrosine recombinase xerC gi|84786907|gb|ABC63089.1| integrase [Erythrobacter litoralis HTCC2594] Length = 306 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 81/304 (26%), Positives = 139/304 (45%), Gaps = 28/304 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT--IQTIRQLSYTEIRAFIS 76 + +L L ERG + TL +Y D E + + T R+ + + + + S Sbjct: 9 EEFLAMLAAERGAAANTLAAYRRD---------LEGAEALAGDLATARRPALSRLGSAWS 59 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + ++ R S ++ F +L + + + LP+ L+ K+ Sbjct: 60 D-----LAPATVARKASALRQFYGFLVDEGLREDDPSSALPRPTMRRPLPKTLSHKEVER 114 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L + + ++ + R A++ LLYG GLR +E +SL + D L + GKG Sbjct: 115 LFEQAE-REAETSRPLPVRLLALIELLYGSGLRATELVSLPVAAVPRDAPFLTVTGKGGV 173 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 R+VP+ R+A+ + L D LF + +FQ +++L L Sbjct: 174 ARMVPVSGRAREALQSWMGLRGSDSPY-----LFPSRKAHITRVRLFQ-MLKELAVRADL 227 Query: 257 -PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 P + H LRH+FATHLL G DLR +Q++LGH +STTQIYT+V++ ++ + + Sbjct: 228 NPDKVSPHVLRHAFATHLLEGGADLRVLQTLLGHADISTTQIYTHVDAAR----LVALVN 283 Query: 316 QTHP 319 + HP Sbjct: 284 ERHP 287 >gi|322691408|ref|YP_004220978.1| tyrosine recombinase [Bifidobacterium longum subsp. longum JCM 1217] gi|320456264|dbj|BAJ66886.1| tyrosine recombinase [Bifidobacterium longum subsp. longum JCM 1217] Length = 357 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 9/156 (5%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 RN+AIL LLY G+R++E +S+ +I T+++ GKG+K R+VP ++A+ + Sbjct: 188 RNAAILELLYATGIRVAELVSMNIADIDFSTRTIKVTGKGNKQRVVPFGLPAQRALETWL 247 Query: 215 D--------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 + + LF G RG ++ + + + + R G+P + H LR Sbjct: 248 EQGRPVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVP-DISPHALR 306 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 HS ATH+L G DLR +Q +LGH L TTQ YT+V+ Sbjct: 307 HSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVS 342 >gi|237667473|ref|ZP_04527457.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|237655821|gb|EEP53377.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 328 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 97/330 (29%), Positives = 152/330 (46%), Gaps = 37/330 (11%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE----- 55 ++ ++LPE VS ++L LE R S T+ +Y+ D F FL Y Sbjct: 8 LKNDDLPESVS--------DFLNYLETIRSKSPNTIDAYKIDLTLFFRFLCVYRGLVKND 59 Query: 56 ---EKITIQTIRQLSYTEIR--------AFISKRRTQKIGDRSLKRSLSGIKSFLKYL-K 103 E I I I I+ +F+ K R R+ R ++ +KSF KYL Sbjct: 60 IEFEDINISNIDNEFLKSIKLRDLYAFLSFVEKYRNNSSYARA--RKVATLKSFFKYLFG 117 Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163 K KI +++ + + + K + P L Q++ L++++ + + AR+ IL Sbjct: 118 KAKIISDNPAMELESPKINKRHPVYLTLNQSIALLESL---DKDDKNY--ARDYCILTFF 172 Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLN 222 CG+R+SE + + I D L I GKGDK R V L + +A+ Y + + Sbjct: 173 LNCGMRLSELCGIQIEKIRGD--ILSIVGKGDKERTVYLNEACLRALNNYLSVRDDSKAS 230 Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG-DL 280 + LF R P+N + I++ G T H LRH+ AT + G D+ Sbjct: 231 YENKKYLFLSARNAPINKRTVEIMIKKHITNAGFTGEKYTPHKLRHTAATLMYKYGNVDI 290 Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 RS+QSILGH +STTQIYT+V+ + D + Sbjct: 291 RSLQSILGHENISTTQIYTHVDDDDLRDAV 320 >gi|212695321|ref|ZP_03303449.1| hypothetical protein BACDOR_04866 [Bacteroides dorei DSM 17855] gi|212662231|gb|EEB22805.1| hypothetical protein BACDOR_04866 [Bacteroides dorei DSM 17855] Length = 293 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 83/307 (27%), Positives = 150/307 (48%), Gaps = 25/307 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++L L ER S+ T+ SY D +F ++ +E + T+ +R ++ Sbjct: 4 DSFLDYLRFERNYSEKTIVSYGIDLIKFEEYIR-GKDENVDFTTV---DADLVRGWVMNL 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S+ R LS ++SF ++L K+ + E +L + K LP L E++ L+ Sbjct: 60 IEDGYTSASVNRKLSSLRSFYRFLLKKGVIGEDPMLKIIGPKNKKPLPVFLKEREMDRLL 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D+V + + R+ +L + Y G+R+SE + L ++ S +++ GK +K R Sbjct: 120 DDV----PFKEDFTGCRDRMVLEMFYATGMRLSELIGLNDVDVDFSASLIKVTGKRNKQR 175 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPG-VFQRYIRQLRR 252 ++P +R+A+ Y + N LP F GK + PG V+ R L + Sbjct: 176 LIPFGEELRRAMFVYLKIR------NEVLPEKAGAFFVLKNGKRMYPGKVYLLVKRNLSK 229 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 + L + H LRH+FAT +L+N +L +++ +LGH L+TT+IYT+ + + + Sbjct: 230 VVSLK-KRSPHVLRHTFATAMLNNEAELGAVKELLGHSSLTTTEIYTHTTFEE----LKK 284 Query: 313 IYDQTHP 319 +Y+Q HP Sbjct: 285 VYEQAHP 291 >gi|121634549|ref|YP_974794.1| putative integrase/recombinase [Neisseria meningitidis FAM18] gi|120866255|emb|CAM09996.1| putative integrase/recombinase [Neisseria meningitidis FAM18] gi|254671814|emb|CBA03927.1| site-specific recombinase [Neisseria meningitidis alpha275] gi|316983737|gb|EFV62718.1| tyrosine recombinase XerD [Neisseria meningitidis H44/76] gi|325197973|gb|ADY93429.1| tyrosine recombinase XerD [Neisseria meningitidis G2136] gi|325200561|gb|ADY96016.1| tyrosine recombinase XerD [Neisseria meningitidis H44/76] Length = 291 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 117/233 (50%), Gaps = 11/233 (4%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R+LS K ++++ I T++ ++ K ++P + E+Q L+ T Sbjct: 66 SQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLAAPDTDTP 125 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 H R+ A+L L+Y GLR+SEA+ L N+ D+ + GKGDK R+VP+ Sbjct: 126 H-----GLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQES 180 Query: 207 RKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + YY + P L LF + ++ + +++ G+ + H+L Sbjct: 181 AYWVGRYYTEARPALLKGRSCDALFVSQKKTGISRQLAWMIVKEYAGRAGIG-HISPHSL 239 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 RH+FATHL+ +G DLR +Q +LGH L+TTQIYT+V + W+ + + H Sbjct: 240 RHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANV----WLQGVVKEHH 288 >gi|319409436|emb|CBI83085.1| integrase/recombinase XerD [Bartonella schoenbuchensis R1] Length = 312 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 82/296 (27%), Positives = 137/296 (46%), Gaps = 30/296 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY--TEIRAFISKR 78 +L+ + ERG TL +Y+ D + + +++ +++ S ++ +S Sbjct: 10 FLEMMSAERGACAHTLSAYQNDLQ--------WAHDQLCSRSVSLFSAQREDLINLLSLM 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 T S R LS ++ F ++L + T+ ++ ++ LP+ +NE L+ Sbjct: 62 HTAGFAATSQARRLSTLRQFYQFLYAEGLRTDDPSHDIDTPRQRRLLPKTMNEDTVTKLL 121 Query: 139 DNVLLHTSH-----ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 D L + R ++ +LY GLRISE +SL Q + + + ++GK Sbjct: 122 DRAQLEVDQTDYGSKNHMRALRLQVLIEMLYATGLRISELVSLPVQAVRGKEQFIVVRGK 181 Query: 194 GDKIRIVPLLPSVRKAILEYY-------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 G+K R+V L + I ++ D F L P R G V R Sbjct: 182 GEKERMVLLSDKACQVISQWLVLRDQGKDAASFYL-----FPA-RSSTGYVARQFV-ARG 234 Query: 247 IRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +++L G+ S + H LRH+FA+HLL NG DLR +Q +LGH +STTQIYT+V Sbjct: 235 LKELAERAGVKSSNFSPHVLRHAFASHLLQNGADLRVVQHLLGHCDISTTQIYTHV 290 >gi|326204549|ref|ZP_08194406.1| integrase family protein [Clostridium papyrosolvens DSM 2782] gi|325985342|gb|EGD46181.1| integrase family protein [Clostridium papyrosolvens DSM 2782] Length = 297 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 92/303 (30%), Positives = 148/303 (48%), Gaps = 41/303 (13%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++++ L+ E+ S T+ +Y D F IF +F + I T+ ++ +R + + Sbjct: 8 EDFINFLKAEKDASAFTIANYTSD---FSIFSSFVESQGIK-PTVDAITTPLLRKYTTFL 63 Query: 79 RTQKIGD-RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 + K + +++R ++ ++SF +L ++ ++ + + KK + LP L + L Sbjct: 64 KIDKKYEVETIRRKINSLRSFFSFLISQEYIDKNPMAPITAPKKPDRLPIYLKPDEIKLL 123 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196 + + H S + K R+ I+ L GLR SE LSL QNI +T+ + GKG K Sbjct: 124 ISMPMKH-SRDNKL---RDKCIIETLVFTGLRRSELLSLNWQNIDFGSNTITVLNGKGKK 179 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF--------RGIR--GKPLNPGVFQRY 246 R+VP+ + + Y L +LPL G R PLN Sbjct: 180 QRVVPITEPLISDLWAY---------LQTRLPLHDNAVFISGNGTRLSTTPLN------- 223 Query: 247 IRQLRRYLGLPLST----TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + RRYL L T T H LRHS+ T LL NG DL SIQS++GH L+TT+IYT+V+ Sbjct: 224 -QLFRRYLKLAGLTGKGYTIHKLRHSYGTLLLQNGADLISIQSLMGHNDLNTTKIYTHVD 282 Query: 303 SKN 305 K+ Sbjct: 283 MKH 285 >gi|126178708|ref|YP_001046673.1| phage integrase family protein [Methanoculleus marisnigri JR1] gi|125861502|gb|ABN56691.1| tyrosine recombinase XerC subunit [Methanoculleus marisnigri JR1] Length = 304 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 70/251 (27%), Positives = 123/251 (49%), Gaps = 28/251 (11%) Query: 69 TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 T+ +++S+++ K ++L R +S + SF KYL + +L + + N + Sbjct: 74 TDFFSYLSEQQDYK--PKTLHRMISTLSSFYKYLYVQGAVVADPMLGVERPRIKNQELKY 131 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 L Q L L++ + E++ R+ I+ L+Y G+R+SE ++ ++I ++ T+ Sbjct: 132 LKHSQVLRLINTI------ESE----RDRLIVRLIYATGVRVSELCAICVEDIDFEEQTI 181 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 R++GKGDKIR V + + I + + I+ PLF G +G L+P Q + Sbjct: 182 RVKGKGDKIRTVFIDEETLEEINRF-------IGNTIEGPLFSGQQGNHLSPRTVQHLFK 234 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 Q P T H +RHS+A+ L +LR +Q LGH + TT+IY + + D Sbjct: 235 QY-----APSGITPHKIRHSYASELYRRSKNLRVVQENLGHSSIKTTEIYLHTDI----D 285 Query: 309 WMMEIYDQTHP 319 +Y Q P Sbjct: 286 ERKRVYQQYFP 296 >gi|146297327|ref|YP_001181098.1| tyrosine recombinase XerD [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410903|gb|ABP67907.1| tyrosine recombinase XerD subunit [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 291 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 83/309 (26%), Positives = 141/309 (45%), Gaps = 28/309 (9%) Query: 12 FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71 +E L ++Q + QN T+ SY D ++++ FL I I+ Q + I Sbjct: 8 YEHLCQKQRFSQN----------TVMSYLRDIKKYIEFL---NNTGIKIEDTSQAT---I 51 Query: 72 RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131 +I + + ++ R++ +K F ++LK I I + K + P+ L + Sbjct: 52 ITYIINMQKSGRSNSTIARAIVSLKVFYEFLKDHNIVDIGKI-EIDPPKLERTPPQILTK 110 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 + LL E R+ A+L LLY G+R+SE +SL +I + + + Sbjct: 111 DEV-----EKLLSCPREDDIKGIRDKAMLELLYATGIRVSELISLNLSDINLEHGYIICR 165 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 K + RI+P+ +A+ +Y + P+ + LF G + F + ++ Sbjct: 166 NK-KRDRIIPIGSYAIEAVEKYLNYSRPYLARKKEEEALFLNFNGARMTRQGFWKIVKFY 224 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ T H LRHSFATHL+ NG D+R++Q +LGH +STTQ Y V + Sbjct: 225 TNVAGINKEITPHILRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQV----ANIKL 280 Query: 311 MEIYDQTHP 319 E+Y + HP Sbjct: 281 KEVYQKAHP 289 >gi|170740412|ref|YP_001769067.1| tyrosine recombinase XerD [Methylobacterium sp. 4-46] gi|168194686|gb|ACA16633.1| tyrosine recombinase XerD [Methylobacterium sp. 4-46] Length = 309 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 83/290 (28%), Positives = 133/290 (45%), Gaps = 19/290 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +L L ERG S TL +Y D +L LA + ++ + +RA+++ Sbjct: 13 QPYLDMLAAERGASANTLAAYRRDLDDYLAHLAAEGLDPASV------APAGVRAYVADL 66 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + S R LS I+ F ++L + K+ +LP+ L+ + TL+ Sbjct: 67 AARGLKPSSAARRLSCIRGFHRFLYAEGHAPSDPTAPVSGPKRGRALPKVLSVAEVDTLL 126 Query: 139 DNVLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 + +A R +L LLY GLR+SE +SL + + L ++GKG Sbjct: 127 AVAKEAVARAPNPGEAARAQRLLCLLELLYATGLRVSELVSLPRAAALTKERFLVVRGKG 186 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRG-IRGKPLNPGVFQRYIRQLRR 252 + R+VPL + + +L + P LF L F R ++ + Sbjct: 187 GRERLVPLT------DIARAAMAAHLAHLAVPGPWLFPADSESGHLTRQAFARDLKAVAG 240 Query: 253 YLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G+ + H LRH+FA+HLL NG DLR +Q +LGH +STTQIYT++ Sbjct: 241 AAGIRADRISPHVLRHAFASHLLQNGADLRVVQELLGHADISTTQIYTHI 290 >gi|238063317|ref|ZP_04608026.1| phage integrase [Micromonospora sp. ATCC 39149] gi|237885128|gb|EEP73956.1| phage integrase [Micromonospora sp. ATCC 39149] Length = 340 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 57/157 (36%), Positives = 83/157 (52%), Gaps = 6/157 (3%) Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLN 222 Y G+R+SEA L ++ + +R+ GKG + R VP ++A+ ++ P Sbjct: 187 YATGVRVSEACGLDTADVDHSRRVVRVLGKGSRERSVPYGVPAQRALDDWLQAGRPVLTG 246 Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282 L G RG L+P + +R + GLP TT H LRHS ATHLL G DLR+ Sbjct: 247 PGSGGALLLGARGGRLHPTMARRIVAGYAEAAGLP-RTTPHGLRHSAATHLLEGGADLRA 305 Query: 283 IQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 +Q +LGH L++TQIYT+V+ + + Y Q HP Sbjct: 306 VQELLGHSSLASTQIYTHVSVER----LRAAYRQAHP 338 >gi|258543088|ref|YP_003188521.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-01] gi|256634166|dbj|BAI00142.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-01] gi|256637226|dbj|BAI03195.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-03] gi|256640278|dbj|BAI06240.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-07] gi|256643335|dbj|BAI09290.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-22] gi|256646390|dbj|BAI12338.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-26] gi|256649443|dbj|BAI15384.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-32] gi|256652429|dbj|BAI18363.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655487|dbj|BAI21414.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-12] Length = 291 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 81/288 (28%), Positives = 132/288 (45%), Gaps = 38/288 (13%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + WL N S T+++Y + +F F+A + + ++ +I+A+ Sbjct: 28 KTWLHNR------SSNTVRAYRTNVAEFARFVA---------KPMADVALADIQAWNDS- 71 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-PRALNEKQALTL 137 D + +R +S +KS L Y K + R + ++L R L+ +Q L + Sbjct: 72 -MADAADSTRRRKISAVKSLLTYGHKLGFLPQDAGAAFRMERGRDNLNERILSRQQVLAM 130 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGD 195 + D R A+L LLYG GLRISEA +L +++ QS + GKG Sbjct: 131 LAGEK----------DPRRHALLALLYGTGLRISEACALRWRDMTRRQSGGIATVFGKGG 180 Query: 196 KIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 K R V + PS+ K I D+ P P+ G G L+ R +++ + Sbjct: 181 KTRHVQVSPSLWKEIAAVRSDVGP-------DAPVIPGHDGGLLHERAVDRVVKRAAKRA 233 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 GLP +AH LRH+FA+H L G + +Q+ LGH L+TT Y++ + Sbjct: 234 GLPPDVSAHWLRHAFASHQLDAGQPVHWVQAQLGHSSLATTTRYSHAS 281 >gi|294776711|ref|ZP_06742176.1| integron integrase [Bacteroides vulgatus PC510] gi|294449455|gb|EFG17990.1| integron integrase [Bacteroides vulgatus PC510] Length = 376 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 75/268 (27%), Positives = 127/268 (47%), Gaps = 42/268 (15%) Query: 61 QTIRQLSYTE--IRAFIS--KRRTQKIGDRSLK-----------------RSLSGIKSFL 99 +T+RQL Y+E +RA+ + K Q R+L+ R +S + L Sbjct: 100 ETLRQLRYSEHTVRAYTTYFKEFQQYFAGRNLRYIRPEEINAYIVHLIDTRGISSCQQNL 159 Query: 100 -----KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 K+ ++ + E ++ K+ +LP L++++ +++D D Sbjct: 160 RINSIKFYFEKVLGLERKCYEVKRAKRERTLPDVLSKEEIKSILDAT---------GPDI 210 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213 R + LLY GLRISE L L P +I +S +R+ QGKG K R L + + + EY Sbjct: 211 RLFCMFSLLYSAGLRISELLDLKPHDINVSRSLIRVRQGKGRKDRYTLLSKPLVRKLTEY 270 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 L Q LF +G+P + + +++ + G+ H LRHSFATHL Sbjct: 271 AKL------YKPQEWLFERYKGEPFTESIVSKKLKEAAKEAGITKRVYPHLLRHSFATHL 324 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + G DL+ ++ +LGH +L TT++Y ++ Sbjct: 325 IEQGTDLKIVKELLGHNQLKTTEMYVHI 352 >gi|325525691|gb|EGD03450.1| site-specific tyrosine recombinase XerC [Burkholderia sp. TJI49] Length = 138 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 50/143 (34%), Positives = 84/143 (58%), Gaps = 9/143 (6%) Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242 ++ + ++GKG+K R VP+ RKAI L + + + PLF +RG + PGV Sbjct: 3 EAEVTVRGKGNKERKVPVG---RKAIEALNAWLAVRGEFVKHDPHPLFLSVRGNRMAPGV 59 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + +++ G+P H LRHSFATH+L + GDLR++Q +LGH ++ TQ+YT+++ Sbjct: 60 VRERVKRAALAAGIPAHVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQVYTSLD 119 Query: 303 SKNGGDWMMEIYDQTHPSITQKD 325 ++ + +IYD HP ++D Sbjct: 120 FQH----LAKIYDSAHPRAKKRD 138 >gi|148379752|ref|YP_001254293.1| site-specific recombinase, phage integrase family [Clostridium botulinum A str. ATCC 3502] gi|153934110|ref|YP_001384049.1| site-specific tyrosine recombinase XerC [Clostridium botulinum A str. ATCC 19397] gi|153936224|ref|YP_001387591.1| site-specific tyrosine recombinase XerC [Clostridium botulinum A str. Hall] gi|168180365|ref|ZP_02615029.1| site-specific recombinase, phage integrase family [Clostridium botulinum NCTC 2916] gi|226949034|ref|YP_002804125.1| site-specific recombinase, phage integrase family [Clostridium botulinum A2 str. Kyoto] gi|148289236|emb|CAL83332.1| tyrosine recombinase [Clostridium botulinum A str. ATCC 3502] gi|152930154|gb|ABS35654.1| site-specific recombinase, phage integrase family [Clostridium botulinum A str. ATCC 19397] gi|152932138|gb|ABS37637.1| site-specific recombinase, phage integrase family [Clostridium botulinum A str. Hall] gi|182668709|gb|EDT80687.1| site-specific recombinase, phage integrase family [Clostridium botulinum NCTC 2916] gi|226843631|gb|ACO86297.1| site-specific recombinase, phage integrase family [Clostridium botulinum A2 str. Kyoto] Length = 326 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 94/311 (30%), Positives = 155/311 (49%), Gaps = 45/311 (14%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY-------TE------EKITIQTIRQL 66 ++L L +G S+ T++SY+ D F FL Y TE + I+ + I+ + Sbjct: 19 DFLNYLRTIKGKSENTIESYKLDLIMFFRFLKLYKGMVPGETEFNDIEIKDISDEDIKNI 78 Query: 67 SYTEIRAFIS-KRRTQKIGDRSLKRSLSGIKSFLKYLK-KRKITTESNILNMRNLKKSNS 124 S T++ AF+S + G + R ++ +KSF ++L+ K KI E+ L + + K S Sbjct: 79 SLTDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGKVKIIKENPALELESPKISKR 138 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 P LTL ++ L +S + K+ + R+ I+ + CGLR+SE + NI +D Sbjct: 139 NP------VYLTLDESKRLLSSIDGKFKE-RDLCIVTMFLNCGLRLSELCGINISNIKND 191 Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP------- 237 L + GKG+K R V L + K + +Y LN++ + I K Sbjct: 192 --ILTVVGKGNKERTVYLNKACIKTLNDY---------LNVRKEMGEKIVDKDALFLSKN 240 Query: 238 ---LNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG-DLRSIQSILGHFRL 292 +N + +++ + GL + H LRH+ AT + +GG D+RS+Q ILGH + Sbjct: 241 YTRINKRSVEMLVKKYVKKAGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHENI 300 Query: 293 STTQIYTNVNS 303 STTQIYT+V+S Sbjct: 301 STTQIYTHVDS 311 >gi|326388779|ref|ZP_08210366.1| integrase/recombinase [Novosphingobium nitrogenifigens DSM 19370] gi|326206737|gb|EGD57567.1| integrase/recombinase [Novosphingobium nitrogenifigens DSM 19370] Length = 324 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 89/297 (29%), Positives = 129/297 (43%), Gaps = 27/297 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI--- 75 Q WL +R S T++SY R L F+A + + +S E+RAF+ Sbjct: 6 QEWLVE---QRSASVHTIRSYRDTWRLLLRFIAERKGGGVARVALADISADEVRAFLHHT 62 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK---ITTESNILNMRNLKKSNSLPRALNEK 132 R IG R+ + L+ I+SF ++ R + + +L + ++ S P L Sbjct: 63 EHGRGSTIGTRNCR--LAAIRSFFSFVADRNPEYVAQCAEVLTVPLKREPTSAPCYLEPA 120 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQ 191 + V+ +L T R+ A+L LY G RI EAL L P I D R+ Sbjct: 121 E----VEAILAQPDRSTV-AGMRDHALLSFLYNSGARIQEALDLCPDAIRFDAPHCARLN 175 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GV---FQRYI 247 GKG K RI PL P I + + P + I F GKPL GV Y+ Sbjct: 176 GKGRKERICPLWPETVTLIEKLLERQPRAPDERI----FVNRYGKPLGASGVRFKLAAYV 231 Query: 248 RQLRRYLGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + + + S T H+ RH+ A HL++ G D+ I+S LGH L TT Y N Sbjct: 232 DEAAKAVPSLRSKHVTPHSFRHATAVHLVAAGVDITVIRSWLGHVSLDTTNHYAQAN 288 >gi|291527676|emb|CBK93262.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] Length = 306 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 83/300 (27%), Positives = 143/300 (47%), Gaps = 21/300 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 N+L+ ++ L + TL++Y D RQF E+I+I I +++ + +I R Sbjct: 10 NYLEYCNSQKCLDEKTLKAYRIDLRQF--------SEQISIINITEITPKILEQYIV-RL 60 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN--MRNLKKSNSLPRALNEKQALTL 137 ++ +++KR ++ +K+ YL+ + I + N N + + + LP+ + T Sbjct: 61 HEQYKPKTVKRKIASVKALFHYLEYKDIL-DHNPFNKILIHFRDPVILPKTIPLHTVETF 119 Query: 138 VDNVL-----LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + + TS++ K R++A+ LL+ G+RISE SL ++ T+ I G Sbjct: 120 LSTIYKQRKNAKTSYQ-KRNALRDAAVAELLFATGMRISELCSLKINDVNLYDGTILIYG 178 Query: 193 KGDKIRIVPL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 KGDK R + + +V + EY D FD F GK L+ +R I + Sbjct: 179 KGDKERRIQIGNEAVINILTEYND--AFDTERQACNNFFINQSGKALSDQSVRRMINKYT 236 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 + T H RH+FAT LL D+R IQ +LGH ++ T+IYT+V D ++ Sbjct: 237 SLASIDQHITPHMFRHTFATSLLEADVDIRYIQEMLGHSSINITEIYTHVTVSKQRDILV 296 >gi|237708280|ref|ZP_04538761.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA] gi|229457833|gb|EEO63554.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA] Length = 376 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 75/268 (27%), Positives = 127/268 (47%), Gaps = 42/268 (15%) Query: 61 QTIRQLSYTE--IRAFIS--KRRTQKIGDRSLK-----------------RSLSGIKSFL 99 +T+RQL Y+E +RA+ + K Q R+L+ R +S + L Sbjct: 100 ETLRQLRYSEHTVRAYTAYFKEFQQYFAGRNLRYIRPEEINAYIVHLIDTRGISSCQQNL 159 Query: 100 -----KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 K+ ++ + E ++ K+ +LP L++++ +++D D Sbjct: 160 RINSIKFYFEKVLGLERKCYEVKRAKRERTLPDVLSKEEIKSILDAT---------GPDI 210 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213 R + LLY GLRISE L L P +I +S +R+ QGKG K R L + + + EY Sbjct: 211 RLFCMFSLLYSAGLRISELLDLKPHDINVSRSLIRVRQGKGRKDRYTLLSKPLVRKLTEY 270 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 L Q LF +G+P + + +++ + G+ H LRHSFATHL Sbjct: 271 TKL------YKPQEWLFERYKGEPFTESIVSKKLKEAAKEAGITKRVYPHLLRHSFATHL 324 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + G DL+ ++ +LGH +L TT++Y ++ Sbjct: 325 IEQGTDLKIVKELLGHNQLKTTEMYVHI 352 >gi|239628231|ref|ZP_04671262.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239518377|gb|EEQ58243.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 294 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 83/291 (28%), Positives = 139/291 (47%), Gaps = 20/291 (6%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 + E ++++ L R SK T SY+ D Q FLA E+ IT + +++ T + + Sbjct: 1 MTSEIKSFVSYLRDVRQTSKNTEISYQRDLNQLAAFLA---EKGIT--EVEKVTRTSLNS 55 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT--TESNILNMRNLKKSNSLPRALNE 131 +I + ++ R L+ IK+F YL + + S +L ++K + ++NE Sbjct: 56 YILYLEKEGKATTTISRELASIKAFFSYLFREGMIRRDPSELLKAPKIEKKAPVILSVNE 115 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNIMDDQSTLR 189 N LL + + R+ A++ LLY G+R+SE L L+ N+ T R Sbjct: 116 V-------NSLLDQPGTSSPKEIRDKAMMELLYATGIRVSELIGLELSDLNMQIGYITCR 168 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIR 248 G K R+VP + +A+ Y + +L + P LF GK ++ F + I+ Sbjct: 169 ---DGLKERMVPFGKTASQAMSIYLERGRRELLKGKESPWLFTNCSGKAMSRQGFWKIIK 225 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 G+ T HTLRHSFA HL+ G D+ ++Q++LGH +T Q+Y Sbjct: 226 YYGEKAGIQADITPHTLRHSFAAHLIRGGADVHAVQAMLGHSDSTTAQMYA 276 >gi|300723768|ref|YP_003713075.1| int (fragment) [Xenorhabdus nematophila ATCC 19061] gi|297630292|emb|CBJ90943.1| Int (fragment) [Xenorhabdus nematophila ATCC 19061] Length = 333 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 90/327 (27%), Positives = 151/327 (46%), Gaps = 36/327 (11%) Query: 9 IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68 + S L + Q++L +L+ R ++ T Y + R+F+ + ++ I T +Q+S+ Sbjct: 1 MASLTLRQHMQHFLDHLDALR-YTRETRAHYRSNLREFVRWC-----DERGITTAQQVSF 54 Query: 69 TEIRAFISKRRTQK------IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122 ++ ++ QK I ++ + L+ ++ ++L KR+ + + ++ Sbjct: 55 PQLESWQQHMVAQKNRHGRPIAASTVIKKLTSVRHLFRWLVKRRHLRYNPARELALPRRE 114 Query: 123 NSLPRA-LNEKQ-----ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE--AL 174 LP LNE + A+T DN L R+ AIL L+ G+R SE L Sbjct: 115 RRLPWGMLNEPETRRVLAMTGSDNPL----------SVRDRAILETLWSSGIRRSELKRL 164 Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGI 233 L+ ++ +R QGKG + R+VPL S R + Y D+ P + LF Sbjct: 165 QLSELDLAGGMLFVR-QGKGRQDRVVPLGESARHWVQRYLNDVRPRLVWAKDPGYLFLSQ 223 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 +G L G + +R + H RH AT +L NG D R IQ+ILGH L Sbjct: 224 QGSALAEGTLTQIVRNALHRADIDKPGGCHLFRHGMATQMLKNGADTRHIQAILGHASLE 283 Query: 294 TTQIYTNVNSKNGGDWMMEIYDQTHPS 320 +TQIYT V + + E+++QTHP+ Sbjct: 284 STQIYTRVAIGH----LKEVHNQTHPA 306 >gi|60681230|ref|YP_211374.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343] gi|60492664|emb|CAH07437.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343] Length = 294 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 75/268 (27%), Positives = 127/268 (47%), Gaps = 42/268 (15%) Query: 61 QTIRQLSYTE--IRAFISKRRT--QKIGDRSLK-----------------RSLSGIKSFL 99 +T+RQL Y+E +RA+ + R Q R+L+ R +S + L Sbjct: 18 ETLRQLRYSEHTVRAYTAYFREFQQYFAGRNLRYIRPEEINAYIVHLIDTRGISSCQQNL 77 Query: 100 -----KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 K+ ++ + E ++ K+ +LP L++++ +++D D Sbjct: 78 RINSIKFYFEKVLGQERKCYEVKRAKRERTLPDVLSKEEIKSILDAT---------GPDI 128 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213 R + LLY GLRISE L L P +I +S +R+ QGKG K R L + + + EY Sbjct: 129 RLFCMFSLLYSAGLRISELLDLKPHDINVSRSLIRVRQGKGRKDRYTLLSKPLVRKLTEY 188 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 L Q LF +G+P + + +++ + G+ H LRHSFATHL Sbjct: 189 TKL------YKPQEWLFERYKGEPFTESIVSKKLKEAAKEAGITKRVYPHLLRHSFATHL 242 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + G DL+ ++ +LGH +L TT++Y ++ Sbjct: 243 IEQGTDLKIVKELLGHNQLKTTEMYVHI 270 >gi|319900063|ref|YP_004159791.1| integrase family protein [Bacteroides helcogenes P 36-108] gi|319415094|gb|ADV42205.1| integrase family protein [Bacteroides helcogenes P 36-108] Length = 376 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 75/268 (27%), Positives = 127/268 (47%), Gaps = 42/268 (15%) Query: 61 QTIRQLSYTE--IRAFISKRRT--QKIGDRSLK-----------------RSLSGIKSFL 99 +T+RQL Y+E +RA+ + R Q R+L+ R +S + L Sbjct: 100 ETLRQLRYSEHTVRAYTAYFREFQQYFAGRNLRYIRPEEINAYIVHLIDTRGISSCQQNL 159 Query: 100 -----KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 K+ ++ + E ++ K+ +LP L++++ +++D D Sbjct: 160 RINSIKFYFEKVLGQERKCYEVKRAKRERTLPDVLSKEEIKSILDAT---------GPDI 210 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213 R + LLY GLRISE L L P +I +S +R+ QGKG K R L + + + EY Sbjct: 211 RLFCMFSLLYSAGLRISELLDLKPHDINVSRSLIRVRQGKGRKDRYTLLSKPLVRKLTEY 270 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 L Q LF +G+P + + +++ + G+ H LRHSFATHL Sbjct: 271 TKL------YKPQEWLFERYKGEPFTESIVSKKLKEAAKEAGITKRVYPHLLRHSFATHL 324 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + G DL+ ++ +LGH +L TT++Y ++ Sbjct: 325 IEQGTDLKIVKELLGHNQLKTTEMYVHI 352 >gi|255065181|ref|ZP_05317036.1| tyrosine recombinase XerD [Neisseria sicca ATCC 29256] gi|255050602|gb|EET46066.1| tyrosine recombinase XerD [Neisseria sicca ATCC 29256] Length = 291 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 66/216 (30%), Positives = 114/216 (52%), Gaps = 7/216 (3%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R+LS K +L++ + T++ ++ K++ LP + E Q L+ T Sbjct: 66 SQARALSACKRLYAWLEETERRTDNPTRFLKAPKQTQKLPTLITEAQIENLLAAPDTDTP 125 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 H R+ A+L ++Y GLR++EA+ L ++ ++ +R GKGDK+RIVP+ Sbjct: 126 H-----GLRDKALLEVMYATGLRVTEAVKLQLGDLDLNRGCIRTIGKGDKLRIVPMGEEA 180 Query: 207 RKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + Y + P L I +F + ++ + ++ G+ S + H L Sbjct: 181 VYWVERYCAESRPLLLKNKICDEVFVSQKRSGISRQLAWMIVKNYAEAAGIT-SLSPHGL 239 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 RH+FATHL+++G DLR++Q +LGH ++TTQIYT+V Sbjct: 240 RHAFATHLVNHGVDLRAVQLMLGHANINTTQIYTHV 275 >gi|331271115|ref|YP_004385824.1| site specific tyrosine recombinase XerC [Clostridium botulinum BKT015925] gi|329127610|gb|AEB77552.1| site specific tyrosine recombinase XerC [Clostridium botulinum BKT015925] Length = 334 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 101/336 (30%), Positives = 154/336 (45%), Gaps = 53/336 (15%) Query: 11 SFELLKERQNWLQNL--------EIERGLSKLTLQSYECDTRQFLIFLAFYTE------- 55 +FE ++E+ + L E +G S T++ YE D F FL Y Sbjct: 6 NFEDIREKTDTLPQCMTSFFNYSETIKGNSIGTIKGYEVDLTMFFRFLKIYKNLVPNKLE 65 Query: 56 -EKITIQTI-----RQLSYTEIRAFIS---KRRTQKIGDRSLKRSLSGIKSFLKYLKKRK 106 E+I I I ++L T++ AF+S K R R+ R +S +K+F KYL + Sbjct: 66 FEEIPINDIDYNFLKELKLTDLYAFMSFTEKYRNNSSNTRA--RKVSTLKAFFKYLYGKI 123 Query: 107 ITTESNI---LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS----AI 159 + NI L L+K N + L E + L V ID +N I Sbjct: 124 KVLDYNIAEELEKPKLEKRNPIYLTLEESRKLLSV-------------IDGKNKERDYCI 170 Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL--- 216 L + CGLRISE S+ I +D TL + GKG+K R V L + +I +Y + Sbjct: 171 LNIFLNCGLRISELCSIQISKIKED--TLTVIGKGNKERTVYLNKACMDSITDYLKVRNS 228 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLS 275 C + L + LF ++ ++ +++ GL + T H LRH+ AT + Sbjct: 229 CKARVPLEDKDILFLNKNYGHISKRSVEKLVKKYVEKAGLDTTKYTPHKLRHTAATLMFK 288 Query: 276 NGG-DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 GG D+R +Q ILGH +STTQIYT+V+++ D + Sbjct: 289 YGGVDIRKLQLILGHESISTTQIYTHVDNEGLRDAV 324 >gi|288801073|ref|ZP_06406529.1| integrase/recombinase XerC [Prevotella sp. oral taxon 299 str. F0039] gi|288332007|gb|EFC70489.1| integrase/recombinase XerC [Prevotella sp. oral taxon 299 str. F0039] Length = 297 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 79/306 (25%), Positives = 151/306 (49%), Gaps = 17/306 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT--EEKITIQTIRQLSYTEIRAFISKR 78 +L L+ E+ S LT++SY D + F +++T + ++ +TI + ++R++I Sbjct: 6 FLNYLKYEKRRSLLTVESYSEDLKAFQ---SYFTNLDSLLSWETI---TANDVRSWIESM 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + ++ R LS ++SF ++ + R + N+ KK LP+ L E + L+ Sbjct: 60 MDKGNTATTINRRLSALRSFYRFARLRLAYEKDPAKNVIGPKKQKLLPQFLKEVEMERLL 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D+VL E+ R+ I+ L Y G+R+SE +L +I Q +++ GK +K R Sbjct: 120 DDVLQGDDFES----VRDRIIILLFYETGVRLSELTALNCCDIDLMQRQIKVTGKRNKQR 175 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 IVP + + Y + N+ + LF +G + +R + + Sbjct: 176 IVPFGEKLSLELRAYILIRGERENI-VDDALFVSNKGSRMPSTTIRRRVEHYLSQVSTLK 234 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + H LRH+FAT +L+N D+ S++ +LGH L T++YT+ ++ + ++Y + H Sbjct: 235 KRSPHVLRHTFATVMLNNDADIESVRHLLGHESLKATEVYTHTTFEH----LKKVYSKAH 290 Query: 319 PSITQK 324 P ++K Sbjct: 291 PRSSRK 296 >gi|78777445|ref|YP_393760.1| Phage integrase [Sulfurimonas denitrificans DSM 1251] gi|78497985|gb|ABB44525.1| tyrosine recombinase XerD subunit [Sulfurimonas denitrificans DSM 1251] Length = 278 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 83/306 (27%), Positives = 151/306 (49%), Gaps = 43/306 (14%) Query: 17 ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 E + +++ + + + LS+ ++ +Y CD +Q + L + + L + +S Sbjct: 4 ELEAFIEYISVIKALSRKSVDAYTCDLKQIELALN---------KPLISLDSKTLFNLLS 54 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ--- 133 + + + R+L R LS + +F + K + E + + K LP+ L+ +Q Sbjct: 55 EYKNK----RTLNRKLSSVNAFFDFCYKNQFVDEKKKVKFSKIPKL--LPKFLSYQQIQN 108 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 AL+ VD + + R+ A++ LY G RISE L+L ++I + +R K Sbjct: 109 ALSQVDR--------SSVLGLRDYAMIIFLYATGARISECLALRREDIEGEWLHIR-HAK 159 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 G+K RIVP+ + A+ Y + +L + ++ +G+ L+ + I Q +Y Sbjct: 160 GEKERIVPIAFVAKTAVDAYMN----ELKKTKEY-VWSNYKGEKLSR-ISAYKITQ--KY 211 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 LG+ + H LRHS+AT L++ G DLR +Q +LGH L TTQIYT++ ++ + E Sbjct: 212 LGV----SPHVLRHSYATALIAGGADLRVVQELLGHSSLLTTQIYTHIQKQD----LKET 263 Query: 314 YDQTHP 319 + HP Sbjct: 264 LEVCHP 269 >gi|150020077|ref|YP_001305431.1| phage integrase family protein [Thermosipho melanesiensis BI429] gi|149792598|gb|ABR30046.1| phage integrase family protein [Thermosipho melanesiensis BI429] Length = 282 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 82/301 (27%), Positives = 145/301 (48%), Gaps = 29/301 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +N+ L R S+ TL++Y D R+FL ++ + I+++ +I F+ Sbjct: 5 ENFSDYLAHVRRHSENTLKAYLKDVRKFLEYIN---------KPIKEIERKDIETFLKAL 55 Query: 79 RTQKIGDRS-----LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 +I + S + R +S + SF YL+ + + + +++ + +P L E++ Sbjct: 56 SKGEITENSPRETTISRYISSLNSFFNYLELSGTISNNPMERIKHPRLRRKIPDFLTEEE 115 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-G 192 L+D ET + + + LLY GLRISE +L +I LRI+ G Sbjct: 116 IKKLIDVF----DEET---EMKKKLAISLLYYAGLRISELCNLRTTDISFIPPFLRIEMG 168 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 KG K R+VPL V + +Y +L N ++ +F K ++P R+++ + Sbjct: 169 KGRKDRLVPLPDKVLPLLQKYLELK------NPKIYVFEN-EAKHVHPSTVFRWLKDGVK 221 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 + HTLRHS+ATHL+ G +++ +Q +LGH LSTT IY +V + D + + Sbjct: 222 RAKIKKQVHPHTLRHSYATHLIRKGVNIKVVQELLGHTNLSTTSIYLHVADQEKFDAVKK 281 Query: 313 I 313 + Sbjct: 282 L 282 >gi|254172394|ref|ZP_04879069.1| integrase/recombinase [Thermococcus sp. AM4] gi|214033323|gb|EEB74150.1| integrase/recombinase [Thermococcus sp. AM4] Length = 283 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 124/233 (53%), Gaps = 18/233 (7%) Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 F+++ R + +RSL + ++++ ++ + E+ ++ K SLP+AL ++ Sbjct: 51 FLARLRREGYSNRSLNLVVQALRAYFRF---EGLDEEAE--KLKPPKVPKSLPKALTPEE 105 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG- 192 ++ + L R+ I+ LLYG GLR+SE +L ++ D+ + ++G Sbjct: 106 VRKILSVIPLTRR--------RDRLIVLLLYGAGLRVSELCNLKRGDVDLDRGIITVRGG 157 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 KG K R+VP+ P++ + I Y D + + + + RG + + L+P + + + Sbjct: 158 KGAKDRVVPISPALAEEIRAYLRERK-DNSEYLLVEVRRGTKDR-LSPKTVWYLLNRYGK 215 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 G+ T H LRHSFATH+L G D+R+IQ +LGH LSTTQIYT V ++ Sbjct: 216 KAGV--KVTPHMLRHSFATHMLERGVDIRAIQELLGHSNLSTTQIYTKVTVEH 266 >gi|332969737|gb|EGK08751.1| tyrosine recombinase XerD [Kingella kingae ATCC 23330] Length = 294 Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 121/238 (50%), Gaps = 17/238 (7%) Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 R+ R LS K +L ++ ++ +++ K +LP+ + E Q L+ + T Sbjct: 68 RTQSRCLSAAKRLYAWLIEQGKRADNPCRDLKTAKLPRTLPQLITEAQIDALLAAPNVDT 127 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL--- 202 H R+ A+L L+Y GLR+SEA+ L + Q + I GKGDK RIVPL Sbjct: 128 PH-----GLRDKALLELMYATGLRVSEAIGLRLHELKLLQGMVSIIGKGDKQRIVPLGEE 182 Query: 203 -LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 + + + + E D N ++ +F + + + + + + +G+ + + Sbjct: 183 AIFWLERYLHEARDTLLKGANCDV---VFVSQKCNGITRQLAWMAVNKYAQQVGI-VGLS 238 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRH+FATHL+++G DLR +Q +LGH L+TT+IYT+V + + ++ D HP Sbjct: 239 PHGLRHAFATHLVNHGADLRVVQLLLGHANLTTTEIYTHVANVR----LKQVVDTHHP 292 >gi|260890377|ref|ZP_05901640.1| tyrosine recombinase XerD [Leptotrichia hofstadii F0254] gi|260859997|gb|EEX74497.1| tyrosine recombinase XerD [Leptotrichia hofstadii F0254] Length = 257 Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 67/223 (30%), Positives = 112/223 (50%), Gaps = 13/223 (5%) Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 +K+ S+ R +S +K+F K+ K + ++ LK+ LP L K+ +VDN Sbjct: 29 EKLRRNSVLRKVSALKTFYKFCYLNKDVEKDPTGMIKTLKREQRLPEILTLKEMKQIVDN 88 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGKGDKIRI 199 HT +N I+ +L G RISE L+L +++ + D +++ GKG K RI Sbjct: 89 CP-HTPE-----GMQNKLIIKILIATGARISETLNLEIKDVENQDYEFIKVLGKGSKYRI 142 Query: 200 VPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +P+ S+ I Y + P N + +F R + F + ++ + + + Sbjct: 143 IPIYDSLENEIKNYLAIYRPKLKNASESFKIFPNTRREK-----FWKDLKTIAKNAKIEK 197 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + H RHS AT LL NG D+R +Q ILGH ++TT++YT+V Sbjct: 198 NVYPHIFRHSLATILLGNGADIRIVQEILGHANITTTEVYTHV 240 >gi|254508879|ref|ZP_05120988.1| super-integron integrase IntIA [Vibrio parahaemolyticus 16] gi|219548193|gb|EED25209.1| super-integron integrase IntIA [Vibrio parahaemolyticus 16] Length = 320 Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 63/194 (32%), Positives = 90/194 (46%), Gaps = 38/194 (19%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS----- 205 ID R + LLYG GLR+ E + L Q+I D LR+ QGKG K R+V L Sbjct: 118 IDPRYKLHIMLLYGSGLRVMECVRLRVQDIDYDYKALRVWQGKGGKNRVVTLASEAISLL 177 Query: 206 ------------------------VRKAILEYYDLCPFDLNLNIQLPLFR--------GI 233 +R ++ Y D N + P + + Sbjct: 178 KEQQGIALRYYKKDINSPGYAGVHIRPSLQRKYPEAELDFNWHFLFPSHQLSVDPNTGEL 237 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 + +N QR +++ + G+ + T HTLRHSFATHLL +G D+R++Q LGH + Sbjct: 238 KRHHINETSLQRAVKRSAKEAGITKAVTCHTLRHSFATHLLESGADIRTVQEQLGHSDVK 297 Query: 294 TTQIYTNVNSKNGG 307 TTQIYT+V + GG Sbjct: 298 TTQIYTHVIERGGG 311 >gi|217076522|ref|YP_002334238.1| site-specific recombinase XerD [Thermosipho africanus TCF52B] gi|259710439|sp|B7IFN3|XERC_THEAB RecName: Full=Tyrosine recombinase xerC gi|217036375|gb|ACJ74897.1| site-specific recombinase XerD [Thermosipho africanus TCF52B] Length = 283 Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 82/289 (28%), Positives = 143/289 (49%), Gaps = 25/289 (8%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYT---EEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85 R S+ TL++Y+ D R+FL ++ E K + ++ LS +I S R T Sbjct: 16 RRHSENTLKAYKKDVRKFLTYVGKQINNIERKDVEEFLKALSKGDITGE-SPRET----- 69 Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 ++ R +S + SF YL+ + E+ + +++ + +P L E + +L+ Sbjct: 70 -TISRYISSLNSFFNYLELSGMIYENPMERIKHPRIRRKIPDFLTEDEVSSLIGAF---- 124 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLP 204 + + R + LLY GLRISE +L +I LR++ GKG K R+VPL Sbjct: 125 ---NEENELRQKTAISLLYYAGLRISELCNLRTTDISFIPPFLRVEMGKGRKDRLVPLPD 181 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 V + +Y DL N ++ +F + K ++P R++++ + + HT Sbjct: 182 KVIPILKKYIDLE------NPKIFVFENGK-KHVHPSTVFRWLKEGVKRANIKKDVHPHT 234 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 LRHS+ATHL+ G +++ +Q +LGH LSTT IY +V + D + ++ Sbjct: 235 LRHSYATHLIRKGVNIKVVQELLGHTNLSTTSIYLHVADQEKFDAVKKL 283 >gi|222529381|ref|YP_002573263.1| site-specific tyrosine recombinase XerC [Caldicellulosiruptor bescii DSM 6725] gi|222456228|gb|ACM60490.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725] Length = 328 Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 92/295 (31%), Positives = 147/295 (49%), Gaps = 37/295 (12%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAF-ISKRRTQKI--------- 83 T++ Y D R FL +L ++ I+ I L ++ F I K +T + Sbjct: 27 TIKEYYYDLRTFLRYLKAKDLNMLSQIEKIEDLENIDVSNFEIEKLKTLTLSNLYEYFSF 86 Query: 84 -------GDRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPR--ALNE-K 132 G + R ++ I+SF KYL K K+ ++ ++ + K PR LNE K Sbjct: 87 LATRFNNGPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYLTLNESK 146 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + L+ +D E K R+ AI+ L CGLR+SE +++ +I DD LRI G Sbjct: 147 KLLSAIDG-------ENK---ERDFAIITLFLNCGLRLSELVNINLSDIKDDM--LRIVG 194 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 KG+K RI+ L + + AI Y + P + + + LF R K ++ Q + + + Sbjct: 195 KGNKERIIYLNKACKDAIENYLKVRPTE-GVKDKDALFLSERKKRISRRTVQYIVEKYVK 253 Query: 253 YLGL-PLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNSKN 305 G+ +AH LRH+ AT + +G D+RS+Q+ILGH +STT+IYT+VN + Sbjct: 254 MAGINQKKISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDD 308 >gi|327313166|ref|YP_004328603.1| tyrosine recombinase XerC [Prevotella denticola F0289] gi|326944725|gb|AEA20610.1| tyrosine recombinase XerC [Prevotella denticola F0289] Length = 292 Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 72/309 (23%), Positives = 141/309 (45%), Gaps = 33/309 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L +ER S +T+ SY D F E+ + Q+++ + + + Sbjct: 5 FLDYLRLERNYSPMTVISYRKDLEAF---------ERFCQELGPQITWESVDTDVVRDWM 55 Query: 81 QKIGDR-----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 + + D+ S+ R +S ++SF ++ + + ++ + ++ ++ LP+ L E + Sbjct: 56 EDMMDKGNAASSVNRRISALRSFYRFALRCGLVSKDPVHGLQGPRRQKPLPQFLKESEME 115 Query: 136 TLVDNVLLHTSHETKWIDARNSAI----LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 L+D + W D + + Y G+R+SE L +++ D L++ Sbjct: 116 QLLDPAM--------WTDGYGDVLARTLIVTFYETGIRLSELTGLDDRDVDDVTCELKVT 167 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQL 250 GK +K RI+P + + + Y C D P LFR +G+ + + +++ Sbjct: 168 GKRNKQRIIPFGKELEETLAAYR--CVRDARTGDSSPALFRTEKGERMTNAQVRALVKKN 225 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 + T H LRH+FAT +L++ L S++ +LGH LSTT+IYT+ + + Sbjct: 226 LSRVSTLKKRTPHVLRHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHTTFEQ----L 281 Query: 311 MEIYDQTHP 319 ++Y HP Sbjct: 282 KKVYKNAHP 290 >gi|319945231|ref|ZP_08019493.1| tyrosine recombinase XerC [Lautropia mirabilis ATCC 51599] gi|319741801|gb|EFV94226.1| tyrosine recombinase XerC [Lautropia mirabilis ATCC 51599] Length = 332 Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 78/267 (29%), Positives = 129/267 (48%), Gaps = 23/267 (8%) Query: 69 TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 +IR +++ + SL R LS + F L + + + +R K+ LP+A Sbjct: 13 ADIRRWVAAAARDGLSPASLARRLSAWRGFFDALAEDGRILANPVQGVRPPKRPRRLPKA 72 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----- 183 L QA+ LVD + E + +R+ A+ L Y GLR+SE +L + + Sbjct: 73 LPVDQAVQLVDGPV---EAEQAFTASRDRAMAELFYSSGLRLSELTALDHRWLQASGDGA 129 Query: 184 ------DQSTLRIQ--GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRG 232 D+ +Q GKG K R VP+ + A+ + ++ L + PLF Sbjct: 130 RSSAWLDRPAAEVQVLGKGGKRRTVPVGRAALAALDAWLEIRGEWLAAHPAADTAPLFLS 189 Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 ++G+ L+ Q + L + GLP H LRHSFA+H+L + GDLR++Q +LGH + Sbjct: 190 LQGRRLSNRSVQLRMDALAQRRGLPQHVHPHVLRHSFASHMLQSSGDLRAVQELLGHASI 249 Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHP 319 TTQ+YT ++ ++ + +YD HP Sbjct: 250 GTTQVYTALDFQH----LAAVYDAAHP 272 >gi|254818892|ref|ZP_05223893.1| site-specific tyrosine recombinase XerD [Mycobacterium intracellulare ATCC 13950] Length = 209 Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 102/206 (49%), Gaps = 7/206 (3%) Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175 +R LP++L Q L L++ + + + RN A+L LLY G RISEA+ Sbjct: 6 VRPPTPGRRLPKSLTVDQVLALLEGAGGDSPADGP-LTLRNRALLELLYSTGARISEAVG 64 Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGI 233 L ++ ++ ++GKG K R+VP+ A+ Y DL + +F + Sbjct: 65 LDVDDVDTQARSVLLRGKGGKQRLVPIGRPAVAALDAYLVRGRSDLARRGRGTPAIFLNV 124 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 RG L+ + ++ G+ + H LRHSFATHLL G D+R +Q +LGH ++ Sbjct: 125 RGGRLSRQSAWQVLQDAAERAGITSGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVT 184 Query: 294 TTQIYTNVNSKNGGDWMMEIYDQTHP 319 TTQIYT V + E++ + HP Sbjct: 185 TTQIYTMVTVHA----LREVWAEAHP 206 >gi|269962907|ref|ZP_06177246.1| site-specific recombinase IntI [Vibrio harveyi 1DA3] gi|269832352|gb|EEZ86472.1| site-specific recombinase IntI [Vibrio harveyi 1DA3] Length = 320 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 95/322 (29%), Positives = 136/322 (42%), Gaps = 65/322 (20%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKRRTQKIGD 85 I R +K T+++Y +++++F K++ + R LS+ I +K+ Sbjct: 14 ISRHYAKKTIETYLFWIKRYIVFHQLAHPSKLSEDDVERFLSHLAI--------DEKVAV 65 Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNVLL 143 ++ +L+ I SFL R+ LNMR K LP L + V + Sbjct: 66 KTQALALNAI-SFLY----REYFQMPLSLNMRFQKSLTEKKLPVVLTRDEVRRFVQH--- 117 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV-- 200 ID + + LLYG GLRI E L L Q+I D LR+ QGKG K R V Sbjct: 118 --------IDPKYKLHIQLLYGSGLRIMECLRLRIQDIDYDYGALRVWQGKGGKNRTVTL 169 Query: 201 ------PLLPSVRKAILEY---------------------YDLCPFDLNLNIQLPLFR-- 231 PL V A Y Y D N + P + Sbjct: 170 AKELHEPLKAQVSLARDYYQKDRHMGGYAGVYISDGLRRKYPGAELDFNWHFLFPSTKLS 229 Query: 232 ------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285 R +N QR +++ + G+ S T HTLRHSFATHLL +G D+R++Q Sbjct: 230 VDDDTGEFRRHHINESAIQRAVKRATKDAGIEKSVTCHTLRHSFATHLLESGADIRTVQE 289 Query: 286 ILGHFRLSTTQIYTNVNSKNGG 307 LGH + TTQIYT+V + G Sbjct: 290 QLGHTDVKTTQIYTHVIERGAG 311 >gi|312135197|ref|YP_004002535.1| integrase family protein [Caldicellulosiruptor owensensis OL] gi|311775248|gb|ADQ04735.1| integrase family protein [Caldicellulosiruptor owensensis OL] Length = 328 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 87/292 (29%), Positives = 147/292 (50%), Gaps = 31/292 (10%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAF-ISKRRTQKI--------- 83 T++ Y D R FL +L ++ I+ I L ++ +F I K +T + Sbjct: 27 TIKEYYYDLRNFLRYLKAKELNMLSQIEKIEDLENIDVSSFEIEKLKTLTLSNLYEYFSF 86 Query: 84 -------GDRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 G + R ++ I+SF KYL K K+ ++ ++ + K PR L +++ Sbjct: 87 LATRFNNGPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYLTLEESK 146 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L+ + E K R+ A++ L CGLR+SE +++ +I DD LRI GKG+ Sbjct: 147 KLLSAI----DGENK---ERDFAMITLFLNCGLRLSELVNINLSDIKDDM--LRIVGKGN 197 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 K RI+ L + ++AI Y + P + + + LF R K ++ Q + + + G Sbjct: 198 KERIIYLNKACKEAIENYLKVRPTE-GVKDKDALFLSERKKRISRRTVQYIVEKYVKMAG 256 Query: 256 L-PLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNSKN 305 + +AH LRH+ AT + +G D+RS+Q+ILGH +STT+IYT+VN + Sbjct: 257 INQKKISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDD 308 >gi|17548311|ref|NP_521651.1| site-specific tyrosine recombinase XerC [Ralstonia solanacearum GMI1000] gi|34222935|sp|Q8XTL6|XERC2_RALSO RecName: Full=Tyrosine recombinase xerC 2 gi|17430557|emb|CAD17241.1| probable tyrosine recombinase xerc 2 protein [Ralstonia solanacearum GMI1000] Length = 347 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 76/243 (31%), Positives = 129/243 (53%), Gaps = 23/243 (9%) Query: 91 SLSGIKSFLKYLKKRK--ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 +L+ +K++ K+L + + ++ L++ L K LPRA+ Q V+ +L Sbjct: 96 ALAPLKTWFKWLARENHILYNPASELDLPKLPKH--LPRAILSVQE---VEAILAEADPA 150 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----QGKGDKIRIVPLLP 204 T + R+ A+L LLY G+R E L + D +T R+ GKG K R+VP+ Sbjct: 151 TPY-GLRDRAMLELLYSTGIRRMEVAGLA---LYDVDATRRLAFVRDGKGAKDRVVPV-- 204 Query: 205 SVRK-AILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 VR A L+ Y L L + + LF G+P++P +++ + G+ Sbjct: 205 GVRALAWLDRYLLEARPQLIVAEREALFVTDYGEPVSPEYVASRVKRYMEFAGIQKPGAT 264 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322 H LRH+ ATH+L G D+R +Q++LGH +L+TT+IYT+V+ ++ + I+D THP+ Sbjct: 265 HLLRHAMATHMLEAGADVRVLQALLGHAQLNTTEIYTHVSIEH----LRAIHDATHPARL 320 Query: 323 QKD 325 Q++ Sbjct: 321 QRE 323 >gi|303239825|ref|ZP_07326348.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302592535|gb|EFL62260.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 351 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 62/194 (31%), Positives = 103/194 (53%), Gaps = 18/194 (9%) Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173 +++ K+ LP LN + ++++V + ++ AI+ L+Y GLR+SEA Sbjct: 157 FDIKRPKREQKLPSVLNTNEVFKIIESV----------DNLKHRAIIMLIYSAGLRVSEA 206 Query: 174 LSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232 +L ++I ++ + I+G KG K R L ++ + + +Y+ + + LF G Sbjct: 207 ANLRIEDIDSKRNLIHIKGAKGKKDRYTLLSNAMLELLRQYFKI------YRPECWLFEG 260 Query: 233 IRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291 G K + Q+ + G+ + HTLRHSFATHLL NG DLR IQ +LGH Sbjct: 261 QNGEKHITVRSIQKVFEKAAFKAGVKKKVSVHTLRHSFATHLLENGTDLRYIQELLGHAS 320 Query: 292 LSTTQIYTNVNSKN 305 STT+IYT+V+ ++ Sbjct: 321 PSTTEIYTHVSERD 334 >gi|253575352|ref|ZP_04852690.1| phage integrase [Paenibacillus sp. oral taxon 786 str. D14] gi|251845349|gb|EES73359.1| phage integrase [Paenibacillus sp. oral taxon 786 str. D14] Length = 380 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 87/284 (30%), Positives = 136/284 (47%), Gaps = 24/284 (8%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 +G S T ++Y R++L LA + + K + T++ T A I RTQ+ + L Sbjct: 96 KGYSLKTSKAYRGHVRRYLQNLADHLKMK-SPGTLKDEKMTS--AIIDSSRTQQYALQLL 152 Query: 89 KRSLSGIK-----SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 ++ S S L++L S + +K LP L+E++ L ++ Sbjct: 153 EQGHSPAYVNQAISALRFLAVEVFKQPSEQMKYIRPQKEKKLPYVLSEQEVLRVIQAP-- 210 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL 202 + ++ +LYL Y GLR+SE + L +I ++ LR+ QGKG K R L Sbjct: 211 --------TNLKHRTMLYLAYASGLRVSEVVRLKVTDIDPERGILRVRQGKGKKDRHTLL 262 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTT 261 + I +Y + L+ + LF G G L+ Q+ ++ + G+ Sbjct: 263 SQTAWDMIQKYVEAE----RLSNSMWLFPGQHSGSHLHERSLQKVFQEALQTSGIRKQVG 318 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 H LRHSFATHLL NG DLR IQ +LGH STT+ YT+V++KN Sbjct: 319 IHVLRHSFATHLLENGTDLRYIQELLGHANPSTTERYTHVSTKN 362 >gi|327405762|ref|YP_004346600.1| integrase family protein [Fluviicola taffensis DSM 16823] gi|327321270|gb|AEA45762.1| integrase family protein [Fluviicola taffensis DSM 16823] Length = 370 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 81/277 (29%), Positives = 139/277 (50%), Gaps = 31/277 (11%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 S+ T+++Y FL F+ + IT + Q + I A +K+ + Sbjct: 111 SESTIKTYSESIGVFLRFVGVKSTNLITNDDLAQFNNEYIIA-------KKLSASYQNQV 163 Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 L+ +K F K K+ E ++ + + +LP L++++ V +L T+ Sbjct: 164 LNAVKLFCKVHAGVKLDPEL----VKRPRSAKTLPNVLSKQE----VKQLLYATT----- 210 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI 210 + ++ +L ++Y CGLR SE LSL P++I+ D+ + I Q KG K R+VPL + + + Sbjct: 211 -NLKHRMMLSVIYACGLRRSELLSLQPKDILSDRLLIHIHQAKGKKDRVVPLSKLLLEQL 269 Query: 211 LEYYDLC-PFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 EYY + P +F G + G+ Q +++ + T H LRHS Sbjct: 270 REYYKIYRPIKW-------IFEGEKPGEKYGERSLQLVLKRALTKTNIKKDVTLHWLRHS 322 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 +ATHLL +G D+R IQ +LGH +TT+IYT+V++K+ Sbjct: 323 YATHLLESGTDIRFIQELLGHKSSTTTEIYTHVSNKS 359 >gi|295690851|ref|YP_003594544.1| integrase family protein [Caulobacter segnis ATCC 21756] gi|295432754|gb|ADG11926.1| integrase family protein [Caulobacter segnis ATCC 21756] Length = 313 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 83/312 (26%), Positives = 136/312 (43%), Gaps = 31/312 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ + +ER ++ TL +Y D FL + + + A+ Sbjct: 12 FLEMMAVERAAARNTLTAYGKDLEDARGFLGRSKRD------LDDADAEAVEAYFQDLGA 65 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + + R S ++ F +++ T+ + K LP+ L + L+ Sbjct: 66 RGLSPATAARRRSAVRQFYRFVLGEGWRTDDPSRRVAAPKAGRPLPKVLERAEIERLLAA 125 Query: 141 VLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 T+ T+ D+ R + I+ L+Y GLRISE L+L + D + L ++GKG K Sbjct: 126 A---TAPNTEMGDSAQGLRLACIIELIYASGLRISELLALPLTALARDPAYLIVKGKGGK 182 Query: 197 IRIVPLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 R+ PL + R A+ Y P + L RG G+ + R + QL Sbjct: 183 ERLAPLNDAARAAVNAYLAGRRTFLPKGAKESPWLFPSRGGSGR-----LTARRVGQLLD 237 Query: 253 YLGLPLS-----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 + + H LRH+FATHLL G DLR IQ++LGH ++TTQIYT+V G Sbjct: 238 DAAIAAGIDRDKVSPHVLRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHV----AG 293 Query: 308 DWMMEIYDQTHP 319 + + + HP Sbjct: 294 EHLAHVVQTKHP 305 >gi|299144068|ref|ZP_07037148.1| tyrosine recombinase XerC [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518553|gb|EFI42292.1| tyrosine recombinase XerC [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 326 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 89/307 (28%), Positives = 147/307 (47%), Gaps = 33/307 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFL----AFYTEEKIT-----------IQTI 63 ++L L +G S+ T++ Y D R FL F+ E+ I +++I Sbjct: 13 DDFLSYLSTTKGASQTTIKEYYYDIRIFLNFIFVRKGIIDEKSINEIDIDAINIDILKSI 72 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK-S 122 ++ +++ K R K +++ R +S I++F YL + E N + ++ K Sbjct: 73 NKMDIYAYNSYLDKIR--KNSNKTKYRKISSIRTFFNYLSNKIDVIEFNPIEDIDMPKIE 130 Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWID---ARNSAILYLLYGCGLRISEALSLTPQ 179 LP L +++ +LL T E+K D R+ AI+ L CG+R+SE L + Sbjct: 131 KRLPIYLTLEES-----KLLLKTVSESKIKDKYKTRDYAIVVLFLNCGMRLSELSGLNIK 185 Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239 ++ +D +TLR+ GKG+K R + L + A+ Y + N LF R L+ Sbjct: 186 DVNND-NTLRVTGKGNKERTIYLNNACVNALKNYLNY----RNDTDNKALFLSNRNTRLS 240 Query: 240 PGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQI 297 QR + + GL T H LRH+ A+ + G D+RS+Q ILGH ++TTQI Sbjct: 241 NRQIQRMVEKYINASGLDSEKYTVHKLRHTAASLMYQYGDADIRSLQEILGHESVTTTQI 300 Query: 298 YTNVNSK 304 YT++N K Sbjct: 301 YTHINDK 307 >gi|261250897|ref|ZP_05943471.1| integron integrase IntI4 [Vibrio orientalis CIP 102891] gi|260937770|gb|EEX93758.1| integron integrase IntI4 [Vibrio orientalis CIP 102891] Length = 320 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/200 (35%), Positives = 95/200 (47%), Gaps = 44/200 (22%) Query: 145 TSHET----KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRI 199 T HET K ID R + LLYG GLR+ EA+ L +I D S +RI QGKG K R+ Sbjct: 107 TKHETRQFLKHIDPRYKLHIMLLYGSGLRVMEAVRLRVHDIDYDYSAVRIWQGKGGKNRV 166 Query: 200 V-------PLLPSVRKAILEYYD-------LCPFDLNLNIQLPLFRG------------- 232 V P+L + YY LN ++Q +RG Sbjct: 167 VTLAKELVPMLNEQQALAQRYYKKDMNTPGYAGVWLNQSLQKK-YRGAELEFKWHYLFPS 225 Query: 233 -----------IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281 +R +N QR +++ + G+ T HTLRHSFATHLL +G D+R Sbjct: 226 NKLSTDPETGLVRRHHINAVALQRAVKRTAKEAGIDKHVTCHTLRHSFATHLLESGADIR 285 Query: 282 SIQSILGHFRLSTTQIYTNV 301 ++Q LGH + TTQIYT+V Sbjct: 286 TVQEQLGHSDVRTTQIYTHV 305 >gi|323703822|ref|ZP_08115459.1| integrase family protein [Desulfotomaculum nigrificans DSM 574] gi|323531237|gb|EGB21139.1| integrase family protein [Desulfotomaculum nigrificans DSM 574] Length = 304 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/278 (26%), Positives = 139/278 (50%), Gaps = 20/278 (7%) Query: 34 LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI------SKRRTQKIGDRS 87 L+ +S E R FL + E KI+I + ++ + R ++ + + +K D Sbjct: 19 LSERSIEWYQRTLNKFLEYCEENKISITS---MTVPQARGYVHWLQNATAKTGKKYADNG 75 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 + + +K YL + + ++ ++ +K + ++ +L+ + Sbjct: 76 INGFIRSVKVMFNYLLEDEYIEKNPFAKVKQIKTDKVIIHTFEPQEV-----KKMLNQFN 130 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207 ++ + D R++ ++ +LY CGLRISEA++L +I +++ +++ GKG K RIVP SV+ Sbjct: 131 KSIYTDLRDALLIRILYDCGLRISEAINLKLTDIDTERNIIKVFGKGHKERIVPFGRSVK 190 Query: 208 KAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAH 263 + IL+Y L + ++ L LF +G PL R I+ + + + + H Sbjct: 191 REILKY--LAKREKAISKDLDEGYLFSTRQGTPLMIRNVIRKIQTVGKKANIEGKRLSPH 248 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T RH+FA L GGDL S+Q I+GH LSTT+ Y ++ Sbjct: 249 TFRHTFAKTYLMQGGDLFSLQQIMGHSDLSTTRQYVHL 286 >gi|303237489|ref|ZP_07324054.1| putative tyrosine recombinase XerC [Prevotella disiens FB035-09AN] gi|302482309|gb|EFL45339.1| putative tyrosine recombinase XerC [Prevotella disiens FB035-09AN] Length = 292 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/306 (24%), Positives = 139/306 (45%), Gaps = 24/306 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L+ L ER S+ T+ Y D F F +E LS+ I + + Sbjct: 4 EDFLKYLTFERNYSQRTIGEYSEDLHGFEQFYKKLDDE---------LSWENIDTDVVRD 54 Query: 79 RTQKIGDR-----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 + + D+ S+ R LS ++SF +Y KR ++ K+ LP+ L E + Sbjct: 55 WVEYMMDKGNTATSVNRRLSALRSFYRYALKRGFVENDPTYKLQGPKRKKPLPQFLKEAE 114 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 +D +L+ + D I+ Y G+R+SE + L ++I +++ GK Sbjct: 115 ----MDTLLVPEMWGNTYKDVLARTIILTFYSTGIRVSELVGLNNKDINIVTHEIKVTGK 170 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 +K RI+P + + I Y L + + Q LF +G+ + + ++ Sbjct: 171 RNKQRIIPFGKELEEQIDTYQKLR--NDEIGEQEALFVTAKGERITTAQVRTMVKANLAK 228 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 + + H LRH+FAT +L+N L S++ +LGH + TT++YT+V + + + Sbjct: 229 VSTLKKKSPHVLRHTFATAMLNNKAGLESVKKLLGHESIVTTEVYTHVTFEQ----LKKA 284 Query: 314 YDQTHP 319 Y++ HP Sbjct: 285 YNEAHP 290 >gi|153829038|ref|ZP_01981705.1| site-specific recombinase IntI4 [Vibrio cholerae 623-39] gi|229526098|ref|ZP_04415502.1| integron integrase IntI4 [Vibrio cholerae bv. albensis VL426] gi|148875467|gb|EDL73602.1| site-specific recombinase IntI4 [Vibrio cholerae 623-39] gi|229336256|gb|EEO01274.1| integron integrase IntI4 [Vibrio cholerae bv. albensis VL426] Length = 320 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 64/188 (34%), Positives = 92/188 (48%), Gaps = 38/188 (20%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206 +D ++ + LLYG GLR+ E + L Q+I D +RI QGKG K R V L P + Sbjct: 118 VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 177 Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233 ++ I YYD P++ + P F+ + Sbjct: 178 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 237 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R +N V Q+ +R+ + G+ + T HTLRHSFATHLL G D+R++Q LGH + Sbjct: 238 RRHHMNETVLQKAVRRAAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVK 297 Query: 294 TTQIYTNV 301 TTQIYT+V Sbjct: 298 TTQIYTHV 305 >gi|225018459|ref|ZP_03707651.1| hypothetical protein CLOSTMETH_02406 [Clostridium methylpentosum DSM 5476] gi|224948768|gb|EEG29977.1| hypothetical protein CLOSTMETH_02406 [Clostridium methylpentosum DSM 5476] Length = 329 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 90/311 (28%), Positives = 154/311 (49%), Gaps = 23/311 (7%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY--------TEEKITIQTI- 63 +L K +++L L +G S+ T+ Y D R F F+ + E+I I I Sbjct: 6 DLPKLARDYLLYLLTIKGRSQRTVDGYAIDLRTFFRFMKLHRGQVPADCVFEEILINDID 65 Query: 64 ----RQLSYTEIRAFIS-KRRTQKIGDRSLKRSLSGIKSFLKYLK-KRKITTESNILNMR 117 R +S +++ F++ R++ G ++ R +S ++ F KYL ++ T++ + N+ Sbjct: 66 DNFIRSVSLSDVYEFLNYTMRSRSNGAKTRARKVSSLRGFFKYLTVNTQLLTDNPVKNLE 125 Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 SLP L+ +Q++ L+D V +S T++ R+ IL L CG+R+SE + + Sbjct: 126 IPAAKKSLPIHLSVEQSVKLLDEVGARSSG-TQY---RDYCILTLFLNCGMRLSELVGIN 181 Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIR-G 235 + D L++ GKG+K R+V L + + AI Y L + + LF R G Sbjct: 182 LSSFDRDSGALKLLGKGNKERLVYLNEACQDAIDNYLTKERGQLKTIVDKDALFLSCRSG 241 Query: 236 KPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLS 293 K L Q + + GL + + H LRH+ AT L G DL ++ +LGH + Sbjct: 242 KRLGARQVQLVVSGALKAAGLDHMGFSTHKLRHTAATLLYQEGNVDLLVLKEMLGHANVG 301 Query: 294 TTQIYTNVNSK 304 TT+IYT+V++K Sbjct: 302 TTEIYTHVSNK 312 >gi|253988429|ref|YP_003039785.1| integrase/recombinase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253988435|ref|YP_003039791.1| integrase/recombinase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253990473|ref|YP_003041829.1| integrase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638960|emb|CAR67575.1| probable integrase/recombinase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779879|emb|CAQ83040.1| putative integrase/recombinase [Photorhabdus asymbiotica] gi|253779885|emb|CAQ83046.1| putative integrase/recombinase [Photorhabdus asymbiotica] gi|253781923|emb|CAQ85087.1| putative integrase [Photorhabdus asymbiotica] Length = 472 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 94/333 (28%), Positives = 153/333 (45%), Gaps = 25/333 (7%) Query: 2 EGNNLPEIVSFELLKERQNWLQNLEIERG--LSKLTLQSYECDTRQFLIFLAFYTEEKIT 59 E + P+ + RQ+ LE RG LS+ T +SYE + L F+++ E Sbjct: 131 ETHGQPDAIPARFATLRQHLAAWLEAVRGQGLSERTQESYE---ERLLPFISWC--EARG 185 Query: 60 IQTIRQLSYTEIRAFI----SKRRT--QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI 113 + T Q+S + ++ S R+ Q S + LS ++ + ++L +R + Sbjct: 186 VMTAPQVSLPLLESYQRWLRSSRKANGQPYSPGSQRDRLSVLRQWFRWLLQRHHILYNPT 245 Query: 114 LNMRNLKKSNSLP-RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172 NM ++ LP + +NE + T++ ++T RN AIL +L+ G+R E Sbjct: 246 DNMVLPREEKRLPAQVMNEDETHTVLAATDINTP-----TGLRNRAILEVLWSTGIRRME 300 Query: 173 ALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231 +L + + + + QGKG K R+VP+ + + + P LF Sbjct: 301 VANLLLSEVDFGRGVVLVRQGKGGKDRVVPIGEQALHWLSRWLSVRPELTRRGDSGHLFI 360 Query: 232 GIRGKPLNPGVF-QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290 +G+ L G Q +R+ L H RHS AT +L NG D R IQ+ILGH Sbjct: 361 TKKGRGLARGTLTQIAADSIRKQAQLAKPGACHLFRHSMATQMLENGADTRHIQAILGHE 420 Query: 291 RLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323 +L TTQIYT V + + E+++QTHP+ Q Sbjct: 421 KLETTQIYTRVAIGH----LKEVHEQTHPAERQ 449 >gi|330997069|ref|ZP_08320931.1| integron integrase [Paraprevotella xylaniphila YIT 11841] gi|329571567|gb|EGG53249.1| integron integrase [Paraprevotella xylaniphila YIT 11841] Length = 376 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 103/204 (50%), Gaps = 16/204 (7%) Query: 99 LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158 +K+ ++ + E ++ K+ +LP L++++ +++D D R Sbjct: 164 IKFYFEKVLGQERKCYEVKRAKRERTLPDVLSKEEIKSILDAT---------GPDIRLFC 214 Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC 217 + LLY GLRISE L L P +I +S +R+ QGKG K R L + + + EY L Sbjct: 215 MFSLLYSAGLRISELLDLKPHDINVSRSLIRVRQGKGRKDRYTLLSKPLVRKLTEYTKL- 273 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 Q LF +G+P + + +++ + G+ H LRHSFATHL+ G Sbjct: 274 -----YKPQEWLFERYKGEPFTESIVSKKLKEAAKEAGITKRVYPHLLRHSFATHLIEQG 328 Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301 DL+ ++ +LGH +L TT++Y ++ Sbjct: 329 TDLKIVKELLGHNQLKTTEMYVHI 352 >gi|49476286|ref|YP_034327.1| integrase /recombinase xerD [Bartonella henselae str. Houston-1] gi|49239094|emb|CAF28397.1| Integrase /recombinase xerD [Bartonella henselae str. Houston-1] Length = 312 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 82/310 (26%), Positives = 146/310 (47%), Gaps = 24/310 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY--TEIRAFISK 77 ++L+ + ERG + TL +Y+ D + + ++++ ++ S ++ +S Sbjct: 9 HFLEMMSAERGACEHTLAAYQRDLQ--------WAQDELFSHSVSLFSAQREDLIGLLSL 60 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 T S R LS ++ F ++L + + N+ ++ LP+ ++E L Sbjct: 61 MHTLGFAASSQARRLSTLRQFYQFLYAEGLRADDPSHNIDAPRQGRPLPKVVSENVVTKL 120 Query: 138 VDNVLLHTSHETKWIDARNSAI-----LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 +D L + E A+ + +LY GLRISE +SL Q + ++ ++G Sbjct: 121 LDLAQLEVNQEDYGSKGHFRALRLQLLIEMLYATGLRISELVSLPVQAVRGKDYSILVRG 180 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF--RGIRGKPLNPGVFQRYIRQL 250 KG K R+V L + + ++ L L LF R G + V R ++ L Sbjct: 181 KGKKERMVLLSKKACQVLSQWLSLRD-QGKYAESLYLFPARSETGY-IARQVVARDLKSL 238 Query: 251 RRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 R G+ + H LRH+FA+HLL NG DLR++Q +LGH ++TTQIYT+V + Sbjct: 239 ARRAGIKSGGFSPHVLRHAFASHLLQNGADLRAVQHLLGHSDIATTQIYTHVLEEG---- 294 Query: 310 MMEIYDQTHP 319 + + ++ HP Sbjct: 295 LYRLVNEHHP 304 >gi|312127552|ref|YP_003992426.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108] gi|311777571|gb|ADQ07057.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108] Length = 328 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 122/228 (53%), Gaps = 19/228 (8%) Query: 84 GDRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPRAL---NEKQALTLVD 139 G + R ++ I+SF KYL K K+ ++ ++ + K PR L K+ L+ +D Sbjct: 94 GPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYLTLDESKKLLSAID 153 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 E K R+ AI+ L CGLR+SE +++ +I DD LRI GKG+K RI Sbjct: 154 G-------ENK---ERDFAIITLFLNCGLRLSELVNINLSDIKDDM--LRIVGKGNKERI 201 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PL 258 + L + ++AI Y + P + + + LF R K ++ Q + + + G+ Sbjct: 202 IYLNKACKEAIENYLKVRPTE-GVKDKDALFLSERKKRISRRTVQYIVEKYVKMAGINQK 260 Query: 259 STTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNSKN 305 +AH LRH+ AT + +G D+RS+Q+ILGH +STT+IYT+VN + Sbjct: 261 KISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDD 308 >gi|298482054|ref|ZP_07000243.1| tyrosine recombinase [Bacteroides sp. D22] gi|298271918|gb|EFI13490.1| tyrosine recombinase [Bacteroides sp. D22] Length = 376 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 103/204 (50%), Gaps = 16/204 (7%) Query: 99 LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158 +K+ ++ + E ++ K+ +LP L++++ +++D D R Sbjct: 164 IKFYFEKVLGQERKCYEVKRAKRERTLPDVLSKEEIKSILDAT---------GPDIRLFC 214 Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC 217 + LLY GLRISE L L P +I +S +R+ QGKG K R L + + + EY L Sbjct: 215 MFSLLYSAGLRISELLDLKPHDINVSRSLIRVRQGKGRKDRYTLLSKPLVRKLTEYTKL- 273 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 Q LF +G+P + + +++ + G+ H LRHSFATHL+ G Sbjct: 274 -----YKPQEWLFERYKGEPFTESIVSKKLKEAAKEAGITKRVYPHLLRHSFATHLIEQG 328 Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301 DL+ ++ +LGH +L TT++Y ++ Sbjct: 329 TDLKIVKELLGHNQLKTTEMYVHI 352 >gi|150003403|ref|YP_001298147.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC 8482] gi|254881306|ref|ZP_05254016.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA] gi|294777807|ref|ZP_06743251.1| putative tyrosine recombinase XerC [Bacteroides vulgatus PC510] gi|319640308|ref|ZP_07995033.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A] gi|149931827|gb|ABR38525.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC 8482] gi|254834099|gb|EET14408.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA] gi|294448261|gb|EFG16817.1| putative tyrosine recombinase XerC [Bacteroides vulgatus PC510] gi|317388083|gb|EFV68937.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A] Length = 293 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 82/307 (26%), Positives = 149/307 (48%), Gaps = 25/307 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++L L E+ S+ T+ SY D +F + +EK+ T+ +R ++ Sbjct: 4 DSFLDYLRFEKNYSEKTIVSYGIDLTKFEEYFK-GKDEKVDFTTV---DADLVRGWVMNL 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S+ R LS ++SF ++L K+ + E +L + K LP L E++ L+ Sbjct: 60 MENGYTSASVNRKLSSLRSFYRFLLKKGVIEEDPMLKIIGPKNKKPLPVFLKEREMDRLL 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D+V + + R+ +L + Y G+R+SE + L ++ +++ GK +K R Sbjct: 120 DDV----PFKEDFTGCRDRMVLEMFYATGMRLSELIGLNDVDVDFSAFLIKVTGKRNKQR 175 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPG-VFQRYIRQLRR 252 ++P +R+A+ Y + N LP F GK + PG V+ R L + Sbjct: 176 LIPFGEELRRAMSVYLKIR------NEVLPGKAEAFFVLKNGKRMYPGKVYLLVKRNLSK 229 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 + L + H LRH+FAT +L+N +L +++ +LGH L+TT+IYT+ + + + Sbjct: 230 VVSLK-KRSPHVLRHTFATAMLNNEAELGAVKELLGHSSLTTTEIYTHTTFEE----LKK 284 Query: 313 IYDQTHP 319 +Y+Q HP Sbjct: 285 VYEQAHP 291 >gi|291550597|emb|CBL26859.1| Site-specific recombinase XerD [Ruminococcus torques L2-14] Length = 306 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 79/312 (25%), Positives = 149/312 (47%), Gaps = 35/312 (11%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ E + L TL++Y D RQF YT E I + + TE+ Sbjct: 8 EKYLEYCEFRKELDWNTLKAYRIDLRQFFE----YTMEDIPGKEKIEDYITELH------ 57 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTL 137 +K +++KR ++ +K++ +L++R+I +++ ++ K+S LPR + ++ L Sbjct: 58 --KKFKQKTIKRKIASVKAYYNFLEEREIISDNPFRKIKVGFKESIILPRIIPREEIEEL 115 Query: 138 VD---------NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 ++ NV +H W+ R+ A++ L+ G R+ E ++ ++ + + Sbjct: 116 LNFMYAQENKSNVKVHKF----WL--RDIAVIETLFATGARVYEISNIREDSVNLNTGLI 169 Query: 189 RIQGKGDKIRIVPLLPS-VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 R+ GKG K R + + S + + YY ++ + F RG + + Sbjct: 170 RLMGKGGKERYIQIASSEILDLLKNYYKENAKEIKQS--GFFFVNNRGCRYTEQSIRLML 227 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 ++ + G+ + T H RHSFAT+L+ G D+ +Q ILGH + TTQIY +V +K Sbjct: 228 KKYTKLAGIERNITPHMFRHSFATYLIEEGVDISCVQQILGHSSIKTTQIYIHVAAKKQA 287 Query: 308 DWMMEIYDQTHP 319 EI ++HP Sbjct: 288 ----EILRESHP 295 >gi|300872281|gb|ADK38968.1| IntI4 [Vibrio sp. V82(2010)] Length = 293 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/188 (34%), Positives = 92/188 (48%), Gaps = 38/188 (20%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206 +D ++ + LLYG GLR+ E + L Q+I D +RI QGKG K R V L P + Sbjct: 95 VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 154 Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233 ++ I YYD P++ + P F+ + Sbjct: 155 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 214 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R +N V Q+ +R+ + G+ + T HTLRHSFATHLL G D+R++Q LGH + Sbjct: 215 RRHHMNETVLQKAVRRAAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVK 274 Query: 294 TTQIYTNV 301 TTQIYT+V Sbjct: 275 TTQIYTHV 282 >gi|330994896|ref|ZP_08318818.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1] gi|329758157|gb|EGG74679.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1] Length = 291 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 82/301 (27%), Positives = 135/301 (44%), Gaps = 34/301 (11%) Query: 13 ELLKERQNWLQNLEIERGL---SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69 E K QN NL I+ L + T ++YE D R FL + +T+ +++ Sbjct: 13 EAQKAPQNSADNLLIKTWLHNRGENTRRAYESDVRAFLAHVG---------KTLPEVTAP 63 Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-PRA 128 +++ + + D + +R L +KS L Y ++ +R K +SL R Sbjct: 64 DLQNWFD---SLTGADATRRRKLMAVKSLLSYGAAMEMLPRDVGPAVRIPKGRDSLHERI 120 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ--S 186 L ++Q L+D ET D R +L +LY GLRISE ++ +++ Q Sbjct: 121 LTQEQVRALIDG-------ET---DPRRRVMLRVLYATGLRISELCAVRWKDLKRRQQGG 170 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 + GKG K R V + V K I+ ++ + P+ G G PL+ R Sbjct: 171 VAHVFGKGGKNRTVEIPAKVWKEIVA------LRVDSRPEAPMVPGHDGGPLSVDAVHRS 224 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 +++ + GLP +AH LRH++A+H+ NG +Q LGH L+TT Y++ G Sbjct: 225 VKRAAKRAGLPEQVSAHWLRHAYASHMQDNGAPAHVVQQQLGHTSLATTTRYSHAREGAG 284 Query: 307 G 307 Sbjct: 285 A 285 >gi|153940640|ref|YP_001391047.1| site-specific tyrosine recombinase XerC [Clostridium botulinum F str. Langeland] gi|152936536|gb|ABS42034.1| site-specific recombinase, phage integrase family [Clostridium botulinum F str. Langeland] gi|322806030|emb|CBZ03597.1| putative integrase/recombinase [Clostridium botulinum H04402 065] Length = 326 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 92/302 (30%), Positives = 153/302 (50%), Gaps = 27/302 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY-------TE------EKITIQTIRQL 66 ++L L +G S+ T++SY+ D F FL Y TE + I+ + I+ + Sbjct: 19 DFLNYLRTIKGKSENTIESYKLDLIMFFRFLKLYKGMVPGETEFNDIEIKDISDEDIKNI 78 Query: 67 SYTEIRAFIS-KRRTQKIGDRSLKRSLSGIKSFLKYLK-KRKITTESNILNMRNLKKSNS 124 S T++ AF+S + G + R ++ +KSF ++L+ K KI E+ L + + K S Sbjct: 79 SLTDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGKVKIIKENPALELESPKISKR 138 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 P LTL ++ L +S + K+ + R+ I+ + CGLR+SE + NI +D Sbjct: 139 NP------VYLTLDESKRLLSSIDGKFKE-RDLCIVTMFLNCGLRLSELCGINISNIKND 191 Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVF 243 L + GKG+K R V L + K + +Y + + + LF +N Sbjct: 192 --ILTVVGKGNKERTVYLNKACIKTLNDYLSVRKEMGEKIVDKDALFLSKNYTRINKRSV 249 Query: 244 QRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNV 301 + +++ + GL + H LRH+ AT + +GG D+RS+Q ILGH +STTQIYT+V Sbjct: 250 EMLVKKYVKKAGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHV 309 Query: 302 NS 303 +S Sbjct: 310 DS 311 >gi|302871811|ref|YP_003840447.1| integrase family protein [Caldicellulosiruptor obsidiansis OB47] gi|302574670|gb|ADL42461.1| integrase family protein [Caldicellulosiruptor obsidiansis OB47] Length = 328 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 121/222 (54%), Gaps = 13/222 (5%) Query: 87 SLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 S R ++ I+SF KYL K K+ ++ ++ + K PR L +++ L+ + Sbjct: 97 SRARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYLTLEESKKLLSAI---- 152 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 E K R+ AI+ L CGLR+SE +++ +I DD LRI GKG+K RI+ L + Sbjct: 153 DGENK---ERDFAIITLFLNCGLRLSELVNINLSDIKDDM--LRIVGKGNKERIIYLNKA 207 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHT 264 ++AI Y + P + + + LF R K ++ Q + + + G+ +AH Sbjct: 208 CKEAIENYLKVRPTE-GVKDKDALFLSERKKRISRRTVQYIVEKYVKMAGINQKKISAHK 266 Query: 265 LRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNSKN 305 LRH+ AT + +G D+RS+Q+ILGH +STT+IYT+VN + Sbjct: 267 LRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDD 308 >gi|325131793|gb|EGC54493.1| tyrosine recombinase XerD [Neisseria meningitidis M6190] gi|325137843|gb|EGC60418.1| tyrosine recombinase XerD [Neisseria meningitidis ES14902] Length = 291 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/233 (29%), Positives = 117/233 (50%), Gaps = 11/233 (4%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R+LS K ++++ I T++ ++ K ++P + E+Q L+ T Sbjct: 66 SQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLAAPDTDTP 125 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 H R+ A+L L+Y GLR+SEA+ L ++ D+ + GKGDK R+VP+ Sbjct: 126 H-----GLRDKALLELMYATGLRVSEAVGLNFSSVDLDRGCITALGKGDKQRMVPMGQES 180 Query: 207 RKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + YY + P L LF + ++ + +++ G+ + H+L Sbjct: 181 AYWVERYYTEARPLLLKGRNCDALFVSQKKTGISRQLAWMIVKEYAGRAGIGY-ISPHSL 239 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 RH+FATHL+ +G DLR +Q +LGH L+TTQIYT+V + W+ + + H Sbjct: 240 RHAFATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVANV----WLQGVVKEHH 288 >gi|254669734|emb|CBA03915.1| site-specific recombinase [Neisseria meningitidis alpha153] Length = 291 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/233 (29%), Positives = 117/233 (50%), Gaps = 11/233 (4%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R+LS K ++++ I T++ ++ K ++P + E+Q L+ T Sbjct: 66 SQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLATPDTDTP 125 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 H R+ A+L L+Y GLR+SEA+ L ++ D+ + GKGDK R++P+ Sbjct: 126 H-----GLRDKALLELMYATGLRVSEAVGLNFGSVDLDRGCITALGKGDKQRMIPMGQES 180 Query: 207 RKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + YY + P L LF + ++ + +++ G+ + H+L Sbjct: 181 AYWVERYYTEARPLLLKGRNCDALFVSQKKTGISRQLAWMIVKEYASQAGIG-HISPHSL 239 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 RH+FATHL+ +G DLR +Q +LGH L+TTQIYT+V + W+ + + H Sbjct: 240 RHAFATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVANV----WLQGVVKEHH 288 >gi|312875927|ref|ZP_07735917.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A] gi|311797408|gb|EFR13747.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A] Length = 325 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 121/225 (53%), Gaps = 13/225 (5%) Query: 84 GDRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 G + R ++ I+SF KYL K K+ ++ ++ + K PR L ++ L+ ++ Sbjct: 94 GPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYLTLDESKKLLSSI- 152 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202 E K R+ AI+ L CGLR+SE +++ +I DD LRI GKG+K RI+ L Sbjct: 153 ---DGENK---ERDFAIITLFLNCGLRLSELVNINLSDIKDDM--LRIVGKGNKERIIYL 204 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTT 261 + + AI Y + P + + + LF R K ++ Q + + + G+ + Sbjct: 205 NKACKDAIENYLKVRPTE-GVKDKDALFLSERKKRISRRTVQYIVEKYVKMAGINQKKIS 263 Query: 262 AHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNSKN 305 AH LRH+ AT + +G D+RS+Q+ILGH +STT+IYT+VN + Sbjct: 264 AHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDD 308 >gi|300872297|gb|ADK38976.1| IntI4 [Vibrio sp. V96(2010)] Length = 291 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/188 (34%), Positives = 92/188 (48%), Gaps = 38/188 (20%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206 +D ++ + LLYG GLR+ E + L Q+I D +RI QGKG K R V L P + Sbjct: 96 VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 155 Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233 ++ I YYD P++ + P F+ + Sbjct: 156 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 215 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R +N V Q+ +R+ + G+ + T HTLRHSFATHLL G D+R++Q LGH + Sbjct: 216 RRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVK 275 Query: 294 TTQIYTNV 301 TTQIYT+V Sbjct: 276 TTQIYTHV 283 >gi|330467056|ref|YP_004404799.1| site-specific tyrosine recombinase XerD [Verrucosispora maris AB-18-032] gi|328810027|gb|AEB44199.1| site-specific tyrosine recombinase XerD [Verrucosispora maris AB-18-032] Length = 290 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/183 (32%), Positives = 95/183 (51%), Gaps = 10/183 (5%) Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202 + + +T + R+ A+L LYG G RISE + L ++ + ++++GKG + R+VP+ Sbjct: 108 VQAAGDTAPLALRDRALLEFLYGTGARISETVGLAVDDVDLTDAVVQLRGKGGRDRLVPI 167 Query: 203 LPSVRKAILEYYDLC-PFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-- 258 +A+ Y P + P +F RG PL +R+ LP+ Sbjct: 168 GGYAMQALGAYLVRARPGLVAAGRGTPRVFLNSRGGPLTRQGAWMILRRAAERAALPVDG 227 Query: 259 --STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + + HTLRHS+ATHLL G D+R +Q +LGH ++TTQ+YT V D + E+Y Sbjct: 228 PQAVSPHTLRHSYATHLLDGGADVRVVQELLGHASVTTTQVYTLVTV----DRLREVYAT 283 Query: 317 THP 319 HP Sbjct: 284 AHP 286 >gi|254804633|ref|YP_003082854.1| putative site-specific recombinase/integrase [Neisseria meningitidis alpha14] gi|254668175|emb|CBA04865.1| putative site-specific recombinase/integrase [Neisseria meningitidis alpha14] Length = 291 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/233 (29%), Positives = 117/233 (50%), Gaps = 11/233 (4%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R+LS K ++++ I T++ ++ K ++P + E+Q L+ T Sbjct: 66 SQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLATPDTDTP 125 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 H R+ A+L L+Y GLR+SEA+ L ++ D+ + GKGDK R+VP+ Sbjct: 126 H-----GLRDKALLELMYATGLRVSEAVGLNFGSVDLDRGCITALGKGDKQRMVPMGQES 180 Query: 207 RKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + YY + P L LF + ++ + +++ G+ + H+L Sbjct: 181 AYWVGRYYTEARPALLKGRSCDALFVSQKKTGISRQLAWMIVKEYAGRAGIG-HISPHSL 239 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 RH+FATHL+ +G DLR +Q +LGH L+TTQIYT+V + W+ + + H Sbjct: 240 RHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANV----WLQGVVKEHH 288 >gi|237795202|ref|YP_002862754.1| site-specific recombinase, phage integrase family [Clostridium botulinum Ba4 str. 657] gi|229261716|gb|ACQ52749.1| site-specific recombinase, phage integrase family [Clostridium botulinum Ba4 str. 657] Length = 326 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 92/302 (30%), Positives = 153/302 (50%), Gaps = 27/302 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY-------TE------EKITIQTIRQL 66 ++L L +G S+ T++SY+ D F FL Y TE + I+ + I+ + Sbjct: 19 DFLNYLRTIKGKSENTIESYKLDLIMFFRFLKLYKGMVPGETEFNDIEIKDISDEDIKNI 78 Query: 67 SYTEIRAFIS-KRRTQKIGDRSLKRSLSGIKSFLKYLK-KRKITTESNILNMRNLKKSNS 124 S T++ AF+S + G + R ++ +KSF ++L+ K KI E+ L + + K S Sbjct: 79 SLTDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGKVKIIKENPALELESPKISKR 138 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 P LTL ++ L +S + K+ + R+ I+ + CGLR+SE + NI +D Sbjct: 139 NP------VYLTLDESKRLLSSIDGKFKE-RDLCIVTMFLNCGLRLSELCGINISNIKND 191 Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVF 243 L + GKG+K R V L + K + +Y + + + LF +N Sbjct: 192 --ILTVVGKGNKERTVYLNKACIKTLNDYLSVRKEIGEKIVDKDALFLSKNYTRINKRSV 249 Query: 244 QRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNV 301 + +++ + GL + H LRH+ AT + +GG D+RS+Q ILGH +STTQIYT+V Sbjct: 250 EMLVKKYVKKAGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHV 309 Query: 302 NS 303 +S Sbjct: 310 DS 311 >gi|239621228|ref|ZP_04664259.1| site-specific tyrosine recombinase XerC [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515689|gb|EEQ55556.1| site-specific tyrosine recombinase XerC [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 357 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 9/156 (5%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 RN+AIL LLY G+R++E +S+ ++ T+++ GKG+K R+VP ++A+ + Sbjct: 188 RNAAILELLYATGIRVAELVSMDIVDVDFSNRTIKVTGKGNKQRVVPFGLPAQRALETWL 247 Query: 215 D--------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 + LF G RG ++ + + + + R G+P + H LR Sbjct: 248 EQGRPVLARTATDAAKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVP-DISPHALR 306 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 HS ATH+L G DLR +Q +LGH L TTQ YT+V+ Sbjct: 307 HSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVS 342 >gi|146296950|ref|YP_001180721.1| site-specific tyrosine recombinase XerC [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410526|gb|ABP67530.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 328 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 122/228 (53%), Gaps = 19/228 (8%) Query: 84 GDRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPRAL---NEKQALTLVD 139 G + R ++ I+SF KYL K K+ ++ ++ + K PR L K+ L+ +D Sbjct: 94 GPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYLTLDESKKLLSAID 153 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 E K R+ AI+ L CGLR+SE +++ +I DD LRI GKG+K RI Sbjct: 154 G-------ENK---ERDFAIITLFLNCGLRLSELVNINLSDIKDDM--LRIVGKGNKERI 201 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PL 258 + L + ++AI Y + P + + + LF R K ++ Q + + + G+ Sbjct: 202 IYLNKACKEAIENYLKVRPTE-GVKDKDALFLSERKKRISRRTVQYIVEKYVKMAGINQK 260 Query: 259 STTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNSKN 305 +AH LRH+ AT + +G D+RS+Q+ILGH +STT+IYT+VN + Sbjct: 261 KISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDD 308 >gi|325678006|ref|ZP_08157645.1| site-specific tyrosine recombinase XerC [Ruminococcus albus 8] gi|324110286|gb|EGC04463.1| site-specific tyrosine recombinase XerC [Ruminococcus albus 8] Length = 326 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 95/331 (28%), Positives = 157/331 (47%), Gaps = 42/331 (12%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE--------EKITIQT--IRQL-S 67 +++L NL I + LT Y D R FL ++ + E IT++ I L + Sbjct: 14 EDFLVNLSIIKNRGDLTTDEYYLDIRTFLRYIKIKNKIVPSETKFENITVKDTPIELLEN 73 Query: 68 YTEIRAF-----ISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNI--LNMRNL 119 +TE A+ + R + R+ R + +K F +YL K + ++ NI L + N+ Sbjct: 74 FTEKDAYQYMVWLKDERQNGVAARA--RKTTSLKQFYEYLANKSHLISKDNISSLEVPNV 131 Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 K++ LP+ L + TL+ ++ + R+ I+ L CG+R+SE + Sbjct: 132 KRA--LPKYLTLDEVQTLLSSIRTKNTE-------RDYCIITLFLNCGMRLSELCGININ 182 Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI---QLPLFRGIRGK 236 +I + TLR+ GKG K RI+ L + KAI +Y P+ N + + LF R Sbjct: 183 DIAFENKTLRLLGKGRKERIIYLNDNCIKAIEQY---LPYRKNYEMAQNEKALFLSSRKN 239 Query: 237 PLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRLST 294 ++ Q+ I + GL T H LRH+ AT + +NGGD+ +++ ILGH ST Sbjct: 240 RISRRRVQKIIEECIFAAGLKNTGVTTHKLRHTAATLMYNNNGGDILAVKEILGHESTST 299 Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325 T+IYT++ G D M + + +KD Sbjct: 300 TEIYTHL----GSDKMKNTMNVMEDLLKKKD 326 >gi|193214605|ref|YP_001995804.1| integrase family protein [Chloroherpeton thalassium ATCC 35110] gi|193088082|gb|ACF13357.1| integrase family protein [Chloroherpeton thalassium ATCC 35110] Length = 289 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 85/283 (30%), Positives = 141/283 (49%), Gaps = 28/283 (9%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 +NL I++ S+ T Y C F F ++ EE++ T +Q++ + I I +++ Sbjct: 18 KNLLIQKRYSQNTQDIY-CSY--FKDFCMYFGEEELEKLTTKQIN-SYILDLI---KSKN 70 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 I + ++ +K + + + R E + +K N LP+ L++ + V ++L Sbjct: 71 ISISQQNQRINAVKFYFEKVLGR----EKQYYELHRPRKENKLPKVLSKNE----VKSIL 122 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVP 201 + T + ++ IL L+Y GLR SE L+L P +I + + I G KG K RI Sbjct: 123 VSTD------NIKHKCILMLIYSAGLRRSELLNLKPTDIDSGRMLIHILGAKGKKDRISL 176 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 L ++ K + +YY + + LF G+ G +P +++ G+ + T Sbjct: 177 LSENLLKLLRQYYK------EFHPKKYLFEGLDGGKYSPTSVANILKKASLKAGIHKNVT 230 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 H LRHSFATHLL G DLR IQ +LGH TT+IYT+V+ K Sbjct: 231 PHMLRHSFATHLLEQGTDLRYIQELLGHESSKTTEIYTHVSKK 273 >gi|311108190|ref|YP_003981043.1| tyrosine recombinase XerD [Achromobacter xylosoxidans A8] gi|310762879|gb|ADP18328.1| tyrosine recombinase XerD [Achromobacter xylosoxidans A8] Length = 327 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 79/295 (26%), Positives = 132/295 (44%), Gaps = 26/295 (8%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLA---FYTEEKI---------------TIQTIRQLSY 68 +E GLS TL +Y D F +L Y E + +R Sbjct: 23 LEDGLSANTLAAYRRDLTGFARWLEDPEAYAREMADRHGDAAQAHALPAGPAKPLRDAGK 82 Query: 69 TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 +I A+ + R + + R L+ ++ F + + L + K+ +P+ Sbjct: 83 ADIEAWFAFRHEETRAT-TANRRLAALRRFYAWALREHRAERDPCLTLIAAKQPPRMPKT 141 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 L+E+Q + LL + R+ A+L LY GLR+SE + + ++ ++ + Sbjct: 142 LSEQQV-----DALLRAPDLGQARGLRDRAMLETLYATGLRVSELVGVRALDVSLNEGVV 196 Query: 189 RIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRY 246 R+ GKG K R+VPL I Y +L + LF R + ++ F + Sbjct: 197 RVVLGKGGKDRLVPLGAEAAHWIDLYLKSGRPELAAGRVSDALFITGRAEAMSRQAFWQL 256 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +++ + + H LRH+FATHLL++G DLR +Q +LGH +STTQIYT+V Sbjct: 257 VKKYALLADVRAPLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHV 311 >gi|312793576|ref|YP_004026499.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180716|gb|ADQ40886.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 327 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 121/225 (53%), Gaps = 13/225 (5%) Query: 84 GDRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 G + R ++ I+SF KYL K K+ ++ ++ + K PR L ++ L+ ++ Sbjct: 94 GPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYLTLDESKKLLSSI- 152 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202 E K R+ AI+ L CGLR+SE +++ +I DD LRI GKG+K RI+ L Sbjct: 153 ---DGENK---ERDFAIITLFLNCGLRLSELVNINLSDIKDDM--LRIVGKGNKERIIYL 204 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTT 261 + + AI Y + P + + + LF R K ++ Q + + + G+ + Sbjct: 205 NKACKDAIENYLKVRPTE-GVKDKDALFLSERKKRISRRTVQYIVEKYVKMAGINQKKIS 263 Query: 262 AHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNSKN 305 AH LRH+ AT + +G D+RS+Q+ILGH +STT+IYT+VN + Sbjct: 264 AHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDD 308 >gi|300872295|gb|ADK38975.1| IntI4 [Vibrio sp. V95(2010)] Length = 296 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/188 (34%), Positives = 92/188 (48%), Gaps = 38/188 (20%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206 +D ++ + LLYG GLR+ E + L Q+I D +RI QGKG K R V L P + Sbjct: 101 VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 160 Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233 ++ I YYD P++ + P F+ + Sbjct: 161 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 220 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R +N V Q+ +R+ + G+ + T HTLRHSFATHLL G D+R++Q LGH + Sbjct: 221 RRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVK 280 Query: 294 TTQIYTNV 301 TTQIYT+V Sbjct: 281 TTQIYTHV 288 >gi|153831894|ref|ZP_01984561.1| IntI [Vibrio harveyi HY01] gi|148871892|gb|EDL70715.1| IntI [Vibrio harveyi HY01] Length = 320 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 92/322 (28%), Positives = 136/322 (42%), Gaps = 65/322 (20%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKRRTQKIGD 85 I R +K T+++Y +++++F K+ + R LS+ I +K+ Sbjct: 14 ISRHYAKKTIETYLFWIKRYIVFHQLAHPSKLCEDDVERFLSHLAI--------DEKVAV 65 Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNVLL 143 ++ +L+ I SFL R+ LNMR K LP L + V + Sbjct: 66 KTQALALNAI-SFLY----REYFQMPLSLNMRFQKSLTEKKLPVVLTRNEVRRFVQH--- 117 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL 202 ID + + LLYG GLRI E L L Q+I D LR+ QGKG K R V L Sbjct: 118 --------IDPKYKLHIQLLYGSGLRIMECLRLRIQDIDYDYGALRVWQGKGGKNRTVTL 169 Query: 203 LPSVRKAI-------LEYYDL----------------------CPFDLNLNIQLPLFR-- 231 + + + +YY D N + P + Sbjct: 170 AKELHEPLKAQVNLTRDYYQKDRHMGGYAGVYISDGLRRKYPGAELDFNWHFLFPSTKLS 229 Query: 232 ------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285 R +N QR +++ + G+ S T HTLRHSFATHLL +G D+R++Q Sbjct: 230 IDADTGEFRRHHVNESAIQRAVKRAAKDAGIEKSVTCHTLRHSFATHLLESGADIRTVQE 289 Query: 286 ILGHFRLSTTQIYTNVNSKNGG 307 LGH + TTQIYT+V + G Sbjct: 290 QLGHTDVKTTQIYTHVIERGAG 311 >gi|187779614|ref|ZP_02996087.1| hypothetical protein CLOSPO_03210 [Clostridium sporogenes ATCC 15579] gi|187773239|gb|EDU37041.1| hypothetical protein CLOSPO_03210 [Clostridium sporogenes ATCC 15579] Length = 326 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 94/317 (29%), Positives = 158/317 (49%), Gaps = 27/317 (8%) Query: 5 NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY-------TE-- 55 N+ ++ L + ++L L +G S+ T++SY+ D F FL Y TE Sbjct: 4 NIQQLYDPNLPQRLNDFLNYLRTIKGKSENTIESYKLDLIMFFRFLKLYKGMVPGETEFN 63 Query: 56 ----EKITIQTIRQLSYTEIRAFIS-KRRTQKIGDRSLKRSLSGIKSFLKYLK-KRKITT 109 I+ + I+ +S T++ AF+S + G + R ++ ++SF K+L+ K KI Sbjct: 64 DIEISNISDEDIKNISLTDLFAFVSFAENYRNNGSYAKARKVATLRSFFKFLQGKVKIIK 123 Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169 E+ L + + K S P LTL ++ L +S + K+ + R+ I+ + CGLR Sbjct: 124 ENPALELESPKISKRNP------VYLTLDESKRLLSSIDGKFKE-RDLCIVTMFLNCGLR 176 Query: 170 ISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLP 228 +SE + NI +D L + GKG+K R V L + K + +Y + + + Sbjct: 177 LSELCGINISNIKND--VLTVIGKGNKERTVYLNKACIKTLNDYLSVRKEMGEKIVDKDA 234 Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG-DLRSIQSI 286 LF +N + +++ + GL + H LRH+ AT + +GG D+RS+Q I Sbjct: 235 LFLSKNYTRINKRSVEMLVKKYVKKSGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMI 294 Query: 287 LGHFRLSTTQIYTNVNS 303 LGH +STTQIYT+V+S Sbjct: 295 LGHENISTTQIYTHVDS 311 >gi|254449549|ref|ZP_05062986.1| phage integrase [Octadecabacter antarcticus 238] gi|198263955|gb|EDY88225.1| phage integrase [Octadecabacter antarcticus 238] Length = 320 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/149 (38%), Positives = 82/149 (55%), Gaps = 4/149 (2%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC 217 +L L YGCG+R E + L +I DQ +RI Q KG K R V L + + +++ Sbjct: 146 MLSLAYGCGMRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRNVMLPSDILGLLRQWWKER 205 Query: 218 PFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 P + ++ P LF G R K L+ R +Q + G+ T HTLRHSFATHLL Sbjct: 206 PTGQDRDVPAPERNLFPGYRSKHLSSRQISRLFKQTAQEAGITKPVTLHTLRHSFATHLL 265 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 G D+R IQ++LGH +L+TT Y +V + Sbjct: 266 ERGVDIRVIQALLGHSKLTTTARYASVAT 294 >gi|150016835|ref|YP_001309089.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] gi|149903300|gb|ABR34133.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] Length = 292 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 78/305 (25%), Positives = 145/305 (47%), Gaps = 25/305 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 N +N E G S+ T+ +Y D ++L F +KI + + + + ++I Sbjct: 6 NNYKNYLFESGKSENTIYAYVTDVS---LYLKFLNRKKIDLY---ESDKSTVMSYIQNLT 59 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q +RS+ R + +++F YLK + E + ++ K + LP+ L ++ VD Sbjct: 60 NQGKSERSINRIVISLRNFYSYLKSETLIKEVPKIEYKSSKNNRKLPQILTIEE----VD 115 Query: 140 NVLLHTSHE-TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 ++ + +K I R++A+L L+Y G+++SE + L ++ D + ++ R Sbjct: 116 KIIRIVEKDCSKGI--RDNALLELMYATGMKVSELIGLNVDDVNLDLNFVKCTDNKHYER 173 Query: 199 IVPLLPSVRKAILEY----YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 ++P+ S KA+ EY Y + ++ LF + G L R +++ R Sbjct: 174 LIPIGRSACKALTEYLSIRYKIAQCGVS-----NLFVNLNGNKLTRQGIWRIVKEYSRKA 228 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ +T RHSFA HLL NG ++R++Q +LG+ L+ Y + + D + IY Sbjct: 229 GIDKDVNLNTFRHSFAVHLLQNGANVRAVQKLLGNQVLTYMDTYYEIIN---NDKINYIY 285 Query: 315 DQTHP 319 THP Sbjct: 286 MHTHP 290 >gi|299132835|ref|ZP_07026030.1| tyrosine recombinase XerD [Afipia sp. 1NLS2] gi|298592972|gb|EFI53172.1| tyrosine recombinase XerD [Afipia sp. 1NLS2] Length = 319 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 92/310 (29%), Positives = 137/310 (44%), Gaps = 50/310 (16%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE--KITIQTIRQ-LSYTEIRAFISK 77 +L L E+G TL +Y D FLA ++ Q +R L+ + R F S Sbjct: 13 FLDMLAAEQGAGDNTLNAYRSDLEDLAAFLARAKQDFAHADTQVLRDYLADLDQRGFKSS 72 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 S+ R LS ++ ++L + T+ + K+ +LP+ L+ + Sbjct: 73 ---------SVARRLSSMRHLFRFLLNERKRTDDPAAILSGPKRGRALPKVLS----IAD 119 Query: 138 VDNVLLHTSHETKWID---------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 VD LL + E D R +L +LY GLR+SE ++L D + Sbjct: 120 VDR-LLGKAREFADRDQPPLQKVRAMRLWCLLEVLYATGLRVSELVALPLSAARRDARMI 178 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP------LNPGV 242 ++GKGDK R+VPL S R D L +G + K L P Sbjct: 179 VVRGKGDKERLVPLNQSSR-------DAMAAYLAAAGTAKEEKGEKAKSEPASKWLFPSS 231 Query: 243 ----------FQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291 F R +++L G+ P + H LRH+FA+HLL NG DLR +Q++LGH Sbjct: 232 GESGHLTRQHFARDLKELAVAAGISPRLISPHVLRHAFASHLLHNGADLRIVQTLLGHTD 291 Query: 292 LSTTQIYTNV 301 +STTQIYT+V Sbjct: 292 ISTTQIYTHV 301 >gi|254284963|ref|ZP_04959929.1| site-specific recombinase IntI4 [Vibrio cholerae AM-19226] gi|150424966|gb|EDN16743.1| site-specific recombinase IntI4 [Vibrio cholerae AM-19226] Length = 320 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/188 (34%), Positives = 92/188 (48%), Gaps = 38/188 (20%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206 +D ++ + LLYG GLR+ E + L Q+I D +RI QGKG K R V L P + Sbjct: 118 VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 177 Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233 ++ I YYD P++ + P F+ + Sbjct: 178 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 237 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R +N V Q+ +R+ + G+ + T HTLRHSFATHLL G D+R++Q LGH + Sbjct: 238 RRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVK 297 Query: 294 TTQIYTNV 301 TTQIYT+V Sbjct: 298 TTQIYTHV 305 >gi|319637821|ref|ZP_07992587.1| tyrosine recombinase xerD [Neisseria mucosa C102] gi|317400976|gb|EFV81631.1| tyrosine recombinase xerD [Neisseria mucosa C102] Length = 215 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 62/183 (33%), Positives = 99/183 (54%), Gaps = 7/183 (3%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 K LP + E Q L+ + T H R+ A+L ++Y GLR++EA+ LT Sbjct: 23 KSERKLPTLITEAQIDALLAAPDVETPH-----GLRDKALLEVMYATGLRVTEAVKLTLS 77 Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPL 238 +I + ++R GKGDK+R+VPL + Y + P L I +F + + Sbjct: 78 DIDLHRGSIRTIGKGDKLRLVPLGQEAAYWVERYCNESRPLLLKNKICDEVFVSQKRSGI 137 Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + + +++ G+ S + H LRH+FATHL+++G DLRS+Q +LGH ++TTQIY Sbjct: 138 SRQLAWMIVKEYAEAAGIA-SLSPHGLRHAFATHLVNHGVDLRSVQMMLGHSDINTTQIY 196 Query: 299 TNV 301 T+V Sbjct: 197 THV 199 >gi|229522964|ref|ZP_04412378.1| integron integrase IntI4 [Vibrio cholerae TM 11079-80] gi|229340181|gb|EEO05189.1| integron integrase IntI4 [Vibrio cholerae TM 11079-80] Length = 320 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/188 (34%), Positives = 92/188 (48%), Gaps = 38/188 (20%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206 +D ++ + LLYG GLR+ E + L Q+I D +RI QGKG K R V L P + Sbjct: 118 VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 177 Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233 ++ I YYD P++ + P F+ + Sbjct: 178 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 237 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R +N V Q+ +R+ + G+ + T HTLRHSFATHLL G D+R++Q LGH + Sbjct: 238 RRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVK 297 Query: 294 TTQIYTNV 301 TTQIYT+V Sbjct: 298 TTQIYTHV 305 >gi|15601056|ref|NP_232687.1| site-specific recombinase IntI4 [Vibrio cholerae O1 biovar eltor str. N16961] gi|121730170|ref|ZP_01682564.1| site-specific recombinase IntI4 [Vibrio cholerae V52] gi|147671698|ref|YP_001215774.1| site-specific recombinase IntI4 [Vibrio cholerae O395] gi|153803265|ref|ZP_01957851.1| site-specific recombinase IntI4 [Vibrio cholerae MZO-3] gi|153817564|ref|ZP_01970231.1| site-specific recombinase IntI4 [Vibrio cholerae NCTC 8457] gi|153824064|ref|ZP_01976731.1| site-specific recombinase IntI4 [Vibrio cholerae B33] gi|227811914|ref|YP_002811924.1| site-specific recombinase IntI4 [Vibrio cholerae M66-2] gi|229506555|ref|ZP_04396064.1| integron integrase IntI4 [Vibrio cholerae BX 330286] gi|229510649|ref|ZP_04400129.1| integron integrase IntI4 [Vibrio cholerae B33] gi|229514763|ref|ZP_04404224.1| integron integrase IntI4 [Vibrio cholerae TMA 21] gi|229517220|ref|ZP_04406665.1| integron integrase IntI4 [Vibrio cholerae RC9] gi|229606034|ref|YP_002876738.1| integron integrase IntI4 [Vibrio cholerae MJ-1236] gi|254850510|ref|ZP_05239860.1| site-specific recombinase IntIA [Vibrio cholerae MO10] gi|255745910|ref|ZP_05419857.1| integron integrase IntI4 [Vibrio cholera CIRS 101] gi|262163533|ref|ZP_06031279.1| integron integrase IntI4 [Vibrio cholerae INDRE 91/1] gi|262168208|ref|ZP_06035906.1| integron integrase IntI4 [Vibrio cholerae RC27] gi|297579606|ref|ZP_06941533.1| site-specific recombinase IntI4 [Vibrio cholerae RC385] gi|298500137|ref|ZP_07009943.1| site-specific recombinase IntIA [Vibrio cholerae MAK 757] gi|5825613|gb|AAD53319.1|AF179591_1 site-specific recombinase IntI4 [Vibrio cholerae] gi|3095165|gb|AAC38424.1| site-specific recombinase IntIA [Vibrio cholerae] gi|9657688|gb|AAF96199.1| site-specific recombinase IntI4 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121628089|gb|EAX60629.1| site-specific recombinase IntI4 [Vibrio cholerae V52] gi|124121205|gb|EAY39948.1| site-specific recombinase IntI4 [Vibrio cholerae MZO-3] gi|126511989|gb|EAZ74583.1| site-specific recombinase IntI4 [Vibrio cholerae NCTC 8457] gi|126518414|gb|EAZ75637.1| site-specific recombinase IntI4 [Vibrio cholerae B33] gi|146314081|gb|ABQ18621.1| site-specific recombinase IntI4 [Vibrio cholerae O395] gi|227011056|gb|ACP07267.1| site-specific recombinase IntI4 [Vibrio cholerae M66-2] gi|227014959|gb|ACP11168.1| site-specific recombinase IntI4 [Vibrio cholerae O395] gi|229345256|gb|EEO10229.1| integron integrase IntI4 [Vibrio cholerae RC9] gi|229348743|gb|EEO13701.1| integron integrase IntI4 [Vibrio cholerae TMA 21] gi|229353094|gb|EEO18034.1| integron integrase IntI4 [Vibrio cholerae B33] gi|229356906|gb|EEO21824.1| integron integrase IntI4 [Vibrio cholerae BX 330286] gi|229372520|gb|ACQ62942.1| integron integrase IntI4 [Vibrio cholerae MJ-1236] gi|254846215|gb|EET24629.1| site-specific recombinase IntIA [Vibrio cholerae MO10] gi|255735664|gb|EET91062.1| integron integrase IntI4 [Vibrio cholera CIRS 101] gi|262023451|gb|EEY42154.1| integron integrase IntI4 [Vibrio cholerae RC27] gi|262028100|gb|EEY46759.1| integron integrase IntI4 [Vibrio cholerae INDRE 91/1] gi|297535252|gb|EFH74086.1| site-specific recombinase IntI4 [Vibrio cholerae RC385] gi|297542118|gb|EFH78169.1| site-specific recombinase IntIA [Vibrio cholerae MAK 757] gi|327485489|gb|AEA79895.1| Integron integrase IntI4 [Vibrio cholerae LMA3894-4] gi|327485494|gb|AEA79900.1| Integron integrase IntI4 [Vibrio cholerae LMA3894-4] Length = 320 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/188 (34%), Positives = 92/188 (48%), Gaps = 38/188 (20%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206 +D ++ + LLYG GLR+ E + L Q+I D +RI QGKG K R V L P + Sbjct: 118 VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 177 Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233 ++ I YYD P++ + P F+ + Sbjct: 178 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 237 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R +N V Q+ +R+ + G+ + T HTLRHSFATHLL G D+R++Q LGH + Sbjct: 238 RRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVK 297 Query: 294 TTQIYTNV 301 TTQIYT+V Sbjct: 298 TTQIYTHV 305 >gi|23465946|ref|NP_696549.1| site-specific tyrosine recombinase XerC [Bifidobacterium longum NCC2705] gi|312132551|ref|YP_003999890.1| integrase/recombinase-like protein [Bifidobacterium longum subsp. longum BBMN68] gi|23326657|gb|AAN25185.1| probable integrase/recombinase protein similar to RV2894C [Bifidobacterium longum NCC2705] gi|311773487|gb|ADQ02975.1| Integrase/recombinase-like protein [Bifidobacterium longum subsp. longum BBMN68] Length = 357 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 9/156 (5%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 RN+AIL LLY G+R++E +S+ ++ T+++ GKG+K R+VP ++A+ + Sbjct: 188 RNAAILELLYATGIRVAELVSMDIVDVDFSNRTIKVTGKGNKQRVVPFGLPAQRALETWL 247 Query: 215 D--------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 + LF G RG ++ + + + + R G+P + H LR Sbjct: 248 EQGRPVLARTATDAAKSRATNALFLGARGGRIDQRIARDIVHRAAREAGVP-DISPHALR 306 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 HS ATH+L G DLR +Q +LGH L TTQ YT+V+ Sbjct: 307 HSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVS 342 >gi|159036854|ref|YP_001536107.1| integrase family protein [Salinispora arenicola CNS-205] gi|157915689|gb|ABV97116.1| integrase family protein [Salinispora arenicola CNS-205] Length = 363 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/157 (36%), Positives = 83/157 (52%), Gaps = 6/157 (3%) Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLN 222 Y G+R+SEA L ++ + LR+ GKG++ R VP ++A+ + P+ Sbjct: 210 YATGVRVSEACGLDIADVDPGRRVLRVLGKGNRERTVPYGVPAQRALDAWLRHGRPWLAG 269 Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282 L G RG LNP + + + GLP TT H LRH+ ATHLL G DLR+ Sbjct: 270 PRSANALLLGARGGRLNPTTARGVVARCAAAAGLP-PTTPHGLRHATATHLLEGGADLRT 328 Query: 283 IQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 +Q +LGH L++TQIYT+V+ + + Y Q HP Sbjct: 329 VQELLGHTSLASTQIYTHVSVER----LRAAYRQAHP 361 >gi|187934306|ref|YP_001886003.1| site-specific tyrosine recombinase XerC [Clostridium botulinum B str. Eklund 17B] gi|187722459|gb|ACD23680.1| site-specific recombinase, phage integrase family [Clostridium botulinum B str. Eklund 17B] Length = 329 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 95/309 (30%), Positives = 151/309 (48%), Gaps = 38/309 (12%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY---TEEKIT--------------IQT 62 ++L LE + S T+ +Y+ D F F+ Y +EK T +++ Sbjct: 19 DFLNYLETIKNKSTNTIAAYKKDLTIFFRFMKLYRGLIKEKNTEFEEIDIRDIDDDFLKS 78 Query: 63 IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK-KRKITTESNILNMRNLKK 121 I+ +FI K R R+ R ++ +KSF K+L+ K KI ++ + + + K Sbjct: 79 IKLRDLYAFMSFIEKYRNNSAYARA--RKVATLKSFFKFLQGKAKIIVDNPTIELESPKI 136 Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 + P L Q++ L+++ L S++ AR+ IL L CG+R+SE ++ + I Sbjct: 137 NKRQPVYLTLDQSIHLLNS--LDQSNKNY---ARDYCILILFLNCGMRLSELCGISIEKI 191 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGK 236 DD L I GKG+K R V L + KAI Y + + + LP LF K Sbjct: 192 RDD--ILTIIGKGNKERTVYLNAACLKAIENYMRI----RDDSKALPENKKFLFLSSHNK 245 Query: 237 PLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLST 294 P+N + I++ + GL T H LRH+ AT + G D+RS+Q+ILGH +ST Sbjct: 246 PINQRTVEIMIKKHIKNAGLTDGKYTPHKLRHTAATLMYKYGEVDIRSLQNILGHENIST 305 Query: 295 TQIYTNVNS 303 TQIYT+V+ Sbjct: 306 TQIYTHVDD 314 >gi|153827714|ref|ZP_01980381.1| chain A, Structural Basis For Broad Dna-Specificity In Integron Recombination [Vibrio cholerae MZO-2] gi|149737809|gb|EDM52714.1| chain A, Structural Basis For Broad Dna-Specificity In Integron Recombination [Vibrio cholerae MZO-2] Length = 314 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/188 (34%), Positives = 92/188 (48%), Gaps = 38/188 (20%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206 +D ++ + LLYG GLR+ E + L Q+I D +RI QGKG K R V L P + Sbjct: 112 VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 171 Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233 ++ I YYD P++ + P F+ + Sbjct: 172 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 231 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R +N V Q+ +R+ + G+ + T HTLRHSFATHLL G D+R++Q LGH + Sbjct: 232 RRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVK 291 Query: 294 TTQIYTNV 301 TTQIYT+V Sbjct: 292 TTQIYTHV 299 >gi|76803916|gb|ABA55859.1| IntI [Vibrio sp. DAT722] Length = 320 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 91/322 (28%), Positives = 134/322 (41%), Gaps = 65/322 (20%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKRRTQKIGD 85 I R +K T+++Y +++++F K+ + R LS+ I +K+ Sbjct: 14 ISRHYAKKTIETYLFWIKRYIVFHQLAHPSKLCEDDVERFLSHLAI--------DEKVAV 65 Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNVLL 143 ++ +L+ I SFL R+ LNMR K LP L + V + Sbjct: 66 KTQALALNAI-SFLY----REYFQMPLSLNMRFQKSLTEKKLPVVLTRDEVRRFVQH--- 117 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL 202 ID + + LLYG GLRI E L L Q+I D LR+ QGKG K R V L Sbjct: 118 --------IDPKYKLHIQLLYGSGLRIMECLRLRIQDIDYDYGALRVWQGKGGKNRTVTL 169 Query: 203 LPS-----------------------------VRKAILEYYDLCPFDLNLNIQLPLFR-- 231 + + + Y D N + P + Sbjct: 170 AKELHDPLKSQVNITRDYYQKDRHMGGYAGVYISDGLRKKYPGAELDFNWHFLFPSTKLS 229 Query: 232 ------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285 R +N QR +++ + G+ S T HTLRHSFATHLL +G D+R++Q Sbjct: 230 IDADTGEFRRHHVNESAIQRAVKRAAKDAGIEKSVTCHTLRHSFATHLLESGADIRTVQE 289 Query: 286 ILGHFRLSTTQIYTNVNSKNGG 307 LGH + TTQIYT+V + G Sbjct: 290 QLGHTDVKTTQIYTHVIERGAG 311 >gi|212635507|ref|YP_002312032.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella piezotolerans WP3] gi|212556991|gb|ACJ29445.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella piezotolerans WP3] Length = 317 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 82/304 (26%), Positives = 144/304 (47%), Gaps = 21/304 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI-TIQTIRQLSYTEIRAFISKRR---- 79 L + +G S T+++ ++F+I+ E I TI I + A+++ R Sbjct: 19 LCLAKGQSSDTVRNKRGGLKKFIIWC---QERNISTIDHINLDLMDDYAAYLNSYRKKLD 75 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + +G + L+ +K+F+KY+ ++ + +++ + ++ K + +P+AL + + Sbjct: 76 NEPLGPAQKRNLLTYVKTFVKYMHRKGLLSKNTLSDIELPSKGHQIPKALYSVEEI---- 131 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 V+L R+ A L + + G+R E + L +I + + GKG K R+ Sbjct: 132 EVILEQPLLFGIKGLRDRATLEIFFATGIRRGELVKLNVDDIDFTGKMVCVHGKGKKERL 191 Query: 200 VPLLPSVRKA-ILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 VP+ S R L +Y + P ++ LF GK PG Q + G Sbjct: 192 VPI--SQRGCEWLAFYTGKIRPRFAFISSGKALFLANNGKRYVPGKLSDMASQYVKLAGF 249 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H RH+ AT +L NG DLR IQ +LGH + TTQ+YT+V+ K + E+Y+ Sbjct: 250 DRTGACHLFRHNTATTMLDNGADLRHIQEMLGHASILTTQLYTHVSRKK----LSEVYEA 305 Query: 317 THPS 320 THPS Sbjct: 306 THPS 309 >gi|99031762|pdb|2A3V|A Chain A, Structural Basis For Broad Dna-Specificity In Integron Recombination gi|99031763|pdb|2A3V|B Chain B, Structural Basis For Broad Dna-Specificity In Integron Recombination gi|99031764|pdb|2A3V|C Chain C, Structural Basis For Broad Dna-Specificity In Integron Recombination gi|99031765|pdb|2A3V|D Chain D, Structural Basis For Broad Dna-Specificity In Integron Recombination Length = 320 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/188 (34%), Positives = 92/188 (48%), Gaps = 38/188 (20%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206 +D ++ + LLYG GLR+ E + L Q+I D +RI QGKG K R V L P + Sbjct: 118 VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 177 Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233 ++ I YYD P++ + P F+ + Sbjct: 178 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 237 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R +N V Q+ +R+ + G+ + T HTLRHSFATHLL G D+R++Q LGH + Sbjct: 238 RRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVK 297 Query: 294 TTQIYTNV 301 TTQIYT+V Sbjct: 298 TTQIYTHV 305 >gi|94497015|ref|ZP_01303588.1| integrase/recombinase [Sphingomonas sp. SKA58] gi|94498362|ref|ZP_01304921.1| integrase/recombinase [Sphingomonas sp. SKA58] gi|94422242|gb|EAT07284.1| integrase/recombinase [Sphingomonas sp. SKA58] gi|94423387|gb|EAT08415.1| integrase/recombinase [Sphingomonas sp. SKA58] Length = 334 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 95/319 (29%), Positives = 147/319 (46%), Gaps = 41/319 (12%) Query: 2 EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61 +GN LP ++ Q WL +R S T++SY R L F+A + Sbjct: 3 KGNPLPALLRAFF----QEWLAE---QRSASIHTIRSYRDTWRLLLRFVAERKGCGVARL 55 Query: 62 TIRQLSYTEIRAFI---SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK---ITTESNILN 115 T+ +S E+RAF+ R IG R+ + L+ I+SF ++ + I S +L Sbjct: 56 TLTDVSAGEVRAFLHHTEHGRKTTIGTRNCR--LAAIRSFFSFVADKNPEYIAQCSEVLA 113 Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEAL 174 + ++ S P L ++ V+ +L + T ++ R+ +L LY G RI EAL Sbjct: 114 VPLKREPTSAPCYLEPEE----VEAILAQPNRST--LEGLRDHVLLSFLYNSGARIQEAL 167 Query: 175 SLTPQNI-MDDQSTLRIQGKGDKIRIVPLLP---SVRKAILEYYDLCPFDLNLNIQLPLF 230 L P+ I D + +R+ GKG K RI PL P ++ + +LE P + +F Sbjct: 168 DLCPEAIRFDAPNFVRLYGKGRKERICPLWPETVALLRKLLERQPRAPDER-------IF 220 Query: 231 RGIRGKPLNP-GV---FQRYIRQLRRYLGLPLST---TAHTLRHSFATHLLSNGGDLRSI 283 G+PL GV Y+ Q + L L + T H+ RH+ A HL++ G D+ I Sbjct: 221 VNRYGEPLGASGVRFKLNAYVEQAAKST-LTLQSKHVTPHSFRHATAVHLVAAGVDITVI 279 Query: 284 QSILGHFRLSTTQIYTNVN 302 +S LGH L TT Y N Sbjct: 280 RSWLGHVSLDTTNHYAQAN 298 >gi|58584989|ref|YP_198562.1| site-specific recombinase XerD [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419305|gb|AAW71320.1| Site-specific recombinase XerD [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 328 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 107/324 (33%), Positives = 154/324 (47%), Gaps = 38/324 (11%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 ++ L ER ++ TL+SY D Q FL + T+ S T I+ ++ T Sbjct: 18 YIDALVSERSATQNTLESYRSDLHQLEDFLLK------SGTTLVGASKTNIKDYVKSLCT 71 Query: 81 QK-IGDRSLKRSLSGIKSFLKYLKKRKIT----TESNILNMRNLKKSNSLPRALNEKQAL 135 QK S+ R +S +K+F K L I +N ++N K LP+ L+ K+ L Sbjct: 72 QKKYKSSSISRKISAMKNFYKCLFNDGIIDSNPAPANDDELKNPKVFRPLPKYLSVKEML 131 Query: 136 TLVDNVLLHTSHETKWIDARN-SAILYLLYGCGLRISEALSLTPQ------NIMDDQSTL 188 L+D V + K I++R AIL +LY G+RISE +S+ N D + + Sbjct: 132 LLIDTVRKSANEPNKEINSRRLCAILDILYSSGMRISELISMKLCEVSHLLNSSDKECYI 191 Query: 189 RIQGKGDKIRIV----PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 I+GK K R + L S+R +L +L + LF G KP P Q Sbjct: 192 IIKGKSSKERQILFNEQALQSLRNYLLARDNLISDRKESDW---LFPG--NKPNKPITRQ 246 Query: 245 RYIRQLRRYLGLPLST-----TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 R I QL + L + + H +RHSFATHLL +G + IQ ILGH LSTTQIYT Sbjct: 247 R-IGQLVKELAKKCNIDENKISPHVIRHSFATHLLDSGASIMLIQKILGHTNLSTTQIYT 305 Query: 300 NVNSKNGGDWMMEIYDQTHPSITQ 323 ++ +K D + +HP ITQ Sbjct: 306 HIANKKLKDKLA----NSHP-ITQ 324 >gi|300872287|gb|ADK38971.1| IntI4 [Vibrio sp. V89(2010)] Length = 297 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 92/188 (48%), Gaps = 38/188 (20%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206 +D ++ + LLYG GLR+ E + L Q+I D +RI QGKG K R V L P + Sbjct: 102 VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 161 Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233 ++ I YYD P++ + P F+ + Sbjct: 162 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 221 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R +N V Q+ +R+ + G+ + T HTLRHSFATH L G D+R++Q +LGH + Sbjct: 222 RRHHMNETVLQKAVRRAAQEAGIEKTVTCHTLRHSFATHSLEVGADIRTVQELLGHTDVK 281 Query: 294 TTQIYTNV 301 TTQIYT+V Sbjct: 282 TTQIYTHV 289 >gi|310658536|ref|YP_003936257.1| site-specific integrase/recombinase [Clostridium sticklandii DSM 519] gi|308825314|emb|CBH21352.1| putative site-specific integrase/recombinase [Clostridium sticklandii] Length = 334 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 96/305 (31%), Positives = 143/305 (46%), Gaps = 31/305 (10%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF----ISK 77 N I G S T+ SY D + F + + +I Q I + I ++ +S Sbjct: 28 FTNALISSGKSNNTVVSYYLDIKTFFDYCSI---SEILSQEITDIRPIHINSYYTHLVSV 84 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLK------KRKITTESNILNMRNLKKSNSLPRALNE 131 R I S+KR +K F +L+ K I +S I +K P L E Sbjct: 85 RDNNSI---SIKRKKYVMKLFFDFLEEQNEINKNPIPKDSVI--KAKIKNPYKAPTYL-E 138 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LR 189 + + ++ +L T+ + ++ RN I LL GLRI+EAL+L + +T L Sbjct: 139 IEEIKKINKAILDTN-KNEFTKIRNLFIFNLLIHTGLRINEALNLDLSDFEQGINTNRLY 197 Query: 190 IQGKGDKIRIVPL-LPSVRKAILE---YYDLCPFDLNL-----NIQLPLFRGIRGKPLNP 240 ++GKG+K R +P+ L S I E Y+ L LF RG L Sbjct: 198 VKGKGEKERYLPIELNSTFFQIYEEGFVYNFAERYFTLRNKTKTSNCALFISKRGDRLTS 257 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 Q+ +++LR L + T H LRH+FATHLL NG ++R +Q +LGH +STTQIYT+ Sbjct: 258 RYVQKNLQELRLSANLNKNVTPHKLRHTFATHLLKNGTNIRLVQELLGHSSISTTQIYTH 317 Query: 301 VNSKN 305 NSK+ Sbjct: 318 SNSKD 322 >gi|297559947|ref|YP_003678921.1| integrase family protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844395|gb|ADH66415.1| integrase family protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 328 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 86/316 (27%), Positives = 145/316 (45%), Gaps = 27/316 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +L ER L+ TL +Y D R++ +LA + + + ++ ++ F+ R Sbjct: 19 FLDHLSAERALADNTLAAYRRDLRRYRAYLAGHG-----VLSPERVGPAQVGDFLRALRE 73 Query: 81 -----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 +G S R+L+ ++ ++ + T + LP+A+ Sbjct: 74 GDADHPPLGAASAGRALAAVRGLHRFAAREGWTDADPAAEVSPPAPPMRLPKAVPLASVE 133 Query: 136 TLVDNV----LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----DQST 187 L+D + + R+ A+L +LYG G R+SEA+ L ++ D D + Sbjct: 134 RLLDAAGPVGAPASGDRAGLLALRDRALLEVLYGTGARVSEAVGLDVDDVADAVEGDDAV 193 Query: 188 --LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVF 243 +R +GKG + R+VPL R+A+ Y L + + LF RG L Sbjct: 194 GLVRFRGKGGRERVVPLGSHARRALSGYLVRARPGLAASGRGGPALFLNARGGRLTRQGG 253 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + + G+ + HTLRHSFATHLL G D+R +Q +LGH ++TTQIYT V Sbjct: 254 WGILAAVAERAGVE-GVSPHTLRHSFATHLLDGGADIRVVQELLGHSSVTTTQIYTLVTV 312 Query: 304 KNGGDWMMEIYDQTHP 319 ++ + E+Y +HP Sbjct: 313 EH----LREVYASSHP 324 >gi|220931948|ref|YP_002508856.1| phage integrase family protein [Halothermothrix orenii H 168] gi|219993258|gb|ACL69861.1| phage integrase family protein [Halothermothrix orenii H 168] Length = 310 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 90/315 (28%), Positives = 148/315 (46%), Gaps = 23/315 (7%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 E L +++ + L ERG S LT++ YE D F I+L K ++ +++ I Sbjct: 6 EYLNAVKSFKKYLATERGYSPLTVKEYERDLNLFYIYLTNEMGFKNDF-SLDKINKYHIA 64 Query: 73 AFISKRRTQKIGDRS---LKRSLSGIKSFLKYLKKR---KITTESNILNMRNLKKSNSLP 126 F+ T + D + R L I+SF K+L K K+ + I + ++ + Sbjct: 65 EFLGD--TILVHDNAPTTRNRKLYSIRSFFKFLVKYEYIKVNPAATIEASKTEVRAEPIY 122 Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 LN+ Q ++ + H K R+ AI+ L GLR+SE + L +I Sbjct: 123 MKLNDAQKY--IETIKKHGGVNLK----RDLAIVKLFLYAGLRVSELVGLDLDDIDFKDQ 176 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGV 242 +++ GKG K R VPL P V +I Y+ ++ P N + LF GK ++ Sbjct: 177 SIKFYGKGKKERYVPLHPDVIMSIKNYFPERNEIQP--KNEDAIKALFLSRHGKRISVRT 234 Query: 243 FQRYIRQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 Q +++ + G+ + T H LRH+FA+ L DL+ +Q +LGH +STTQIYT+ Sbjct: 235 IQMMVKKYAKLAGVKNADKITPHKLRHTFASLLYHKTKDLKILQDLLGHADISTTQIYTH 294 Query: 301 VNSKNGGDWMMEIYD 315 + K + E+ D Sbjct: 295 TDVKQRKKAIKELPD 309 >gi|300872271|gb|ADK38963.1| IntI4 [Vibrio sp. V3(2010)] Length = 293 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 64/188 (34%), Positives = 92/188 (48%), Gaps = 38/188 (20%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206 +D ++ + LLYG GLR+ E + L Q+I D +RI QGKG K R V L P + Sbjct: 95 VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 154 Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233 ++ I YYD P++ + P F+ + Sbjct: 155 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 214 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R +N V Q+ +R+ + G+ + T HTLRHSFATHLL G D+R++Q LGH + Sbjct: 215 RRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVK 274 Query: 294 TTQIYTNV 301 TTQIYT+V Sbjct: 275 TTQIYTHV 282 >gi|170754911|ref|YP_001781341.1| site-specific tyrosine recombinase XerC [Clostridium botulinum B1 str. Okra] gi|169120123|gb|ACA43959.1| site-specific recombinase, phage integrase family [Clostridium botulinum B1 str. Okra] Length = 326 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 90/302 (29%), Positives = 151/302 (50%), Gaps = 27/302 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-------------EKITIQTIRQL 66 ++L L +G S+ T++SY+ D F FL Y + I+ + I+ + Sbjct: 19 DFLNYLRTIKGKSENTIESYKLDLIMFFRFLKLYKGMVPGEAEFNDIEIKDISDEDIKNI 78 Query: 67 SYTEIRAFIS-KRRTQKIGDRSLKRSLSGIKSFLKYLK-KRKITTESNILNMRNLKKSNS 124 S T++ AF+S + G + R ++ +KSF ++L+ K KI E+ L + + K S Sbjct: 79 SLTDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGKVKIIKENPALELESPKISKR 138 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 P LTL ++ L +S + K+ + R+ I+ + CGLR+SE + NI +D Sbjct: 139 NP------VYLTLDESKRLLSSIDGKFKE-RDLCIVTMFLNCGLRLSELCGINISNIKND 191 Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVF 243 L + GKG+K R V L + K + +Y + + + LF +N Sbjct: 192 --ILTVVGKGNKERTVYLNKACIKTLNDYLSVRKEMGEKIVDKDALFLSKNYTRINKRSV 249 Query: 244 QRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNV 301 + +++ + GL + H LRH+ AT + +GG D+RS+Q ILGH +STTQIYT+V Sbjct: 250 EMLVKKYVKKAGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHV 309 Query: 302 NS 303 +S Sbjct: 310 DS 311 >gi|294669707|ref|ZP_06734774.1| hypothetical protein NEIELOOT_01608 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308620|gb|EFE49863.1| hypothetical protein NEIELOOT_01608 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 290 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 86/300 (28%), Positives = 140/300 (46%), Gaps = 20/300 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +L ++ LS TL +Y D + + LA E+ ++ S + +T Sbjct: 8 FLDHLWLQERLSANTLAAYRRDLNKIAVRLAGQGEDWLSADG----SGLAAVVYHPDEKT 63 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 RS R+LS K F +L + + + + K+ LP ++E Q L+ Sbjct: 64 -----RSQARALSACKRFYGWLLETEQLSNDPTEYLTAPKQERILPAIVSESQIEMLLAA 118 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + H R+ A+L L+Y GLR+SEA+ LT I + + GKG K R+V Sbjct: 119 PDTDSPH-----GLRDKALLELMYASGLRVSEAVKLTLGEIDLQRGLVVTVGKGGKQRLV 173 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ I Y L N + LF G + ++ + + + G+ Sbjct: 174 PMGEEASYWIERYLAQARPVLLKNARCDELFVGQKRNGISRQLAWMIVDKYAEAAGIR-H 232 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H+LRH+FATHL+++G DLR +QS+LGH +STTQIYT+V ++ + I + HP Sbjct: 233 LSPHSLRHAFATHLVNHGADLRVVQSLLGHADISTTQIYTHVANER----LKNIVSEHHP 288 >gi|258625491|ref|ZP_05720383.1| site-specific recombinase IntI [Vibrio mimicus VM603] gi|258582197|gb|EEW07054.1| site-specific recombinase IntI [Vibrio mimicus VM603] Length = 320 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 65/188 (34%), Positives = 90/188 (47%), Gaps = 38/188 (20%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206 +D + LLYG GLR+ E + L Q+I D +RI QGKG K R V L P + Sbjct: 118 VDPKYQLPAKLLYGSGLRLMECIRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 177 Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233 ++ I YYD P++ + P F+ + Sbjct: 178 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDAM 237 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R +N V QR +R+ + G+ + T HTLRHSFATHLL G D+R++Q LGH + Sbjct: 238 RRHHMNETVLQRTVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVK 297 Query: 294 TTQIYTNV 301 TTQIYT+V Sbjct: 298 TTQIYTHV 305 >gi|329889983|ref|ZP_08268326.1| tyrosine recombinase xerD [Brevundimonas diminuta ATCC 11568] gi|328845284|gb|EGF94848.1| tyrosine recombinase xerD [Brevundimonas diminuta ATCC 11568] Length = 300 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 81/308 (26%), Positives = 136/308 (44%), Gaps = 25/308 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ + +ER S TL +Y D +L + + + A+ + Sbjct: 6 EAFLEMMAVERDASPHTLAAYGRDLADAQTWLN-------DVGGLMGAPQEALEAWFADL 58 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + + R + ++ F ++ + + K+ SLP+ L+ + + Sbjct: 59 SRRGLSAATAARRRASVRQFYRFALGEGWRADDPSRRLDAPKQGRSLPKTLSRDE----I 114 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + +L R ++ + Y GLR+SE L+L + + D + L ++GKG K R Sbjct: 115 EALLTAAGAADSTAGLRLIVLVEMAYASGLRVSELLALKVEAVRRDPAYLIVRGKGGKER 174 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LF--RGIRGKPLNPGVFQRYIRQLRR 252 + PL R+AI + L D P LF G G L P F + + Q Sbjct: 175 LAPLNMPAREAIKAW--LNARDAARKPNTPDSAWLFPSHGKSGH-LTPRRFAQLLDQAAV 231 Query: 253 YLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 G+ P + H LRH+FATHLL G DLR +Q++LGH +STTQIYT+V D + Sbjct: 232 MAGIDPARVSPHVLRHAFATHLLEGGADLRVVQTLLGHADISTTQIYTHVAV----DRLS 287 Query: 312 EIYDQTHP 319 ++ HP Sbjct: 288 QVVHANHP 295 >gi|212224162|ref|YP_002307398.1| integrase/recombinase [Thermococcus onnurineus NA1] gi|254799323|sp|B6YWN8|XERCL_THEON RecName: Full=Probable tyrosine recombinase xerC-like gi|212009119|gb|ACJ16501.1| integrase/recombinase [Thermococcus onnurineus NA1] Length = 282 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 120/233 (51%), Gaps = 18/233 (7%) Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 F++K R + ++SL + ++S+ ++ + +R K SLP++L ++ Sbjct: 50 FLAKLRREGYSNKSLNLVVQALRSYFRFE-----GYDEEAEKLRPPKVPKSLPKSLTREE 104 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG- 192 ++ +V+ T R+ I LLYG GLR+SE +L ++ ++S + ++G Sbjct: 105 VRKIL-SVIPPTKK-------RDRLIFLLLYGAGLRVSELCNLKKSDVDFERSLIIVRGG 156 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 KG K R+VP+ + + I Y L D + + R R L+P +++ Sbjct: 157 KGAKDRVVPIPAFLLEGIKAY--LETRDDDSEYLIVEDRRERKDKLSPKTVWYLLKKYGD 214 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 G+ T H LRHSFATH+L NG D+R+IQ +LGH LSTTQIYT V ++ Sbjct: 215 RAGI--RVTPHMLRHSFATHMLENGVDIRAIQELLGHSNLSTTQIYTKVTVEH 265 >gi|306842844|ref|ZP_07475484.1| site-specific tyrosine recombinase XerD [Brucella sp. BO2] gi|306287038|gb|EFM58549.1| site-specific tyrosine recombinase XerD [Brucella sp. BO2] Length = 247 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 110/241 (45%), Gaps = 32/241 (13%) Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q S R LS ++ F ++L + + KK LP+ ++ + L+D Sbjct: 3 AQGFAPTSQARRLSALRQFFRFLYSEGFRQDDPTGILDAPKKQKPLPKIMSVENVGKLLD 62 Query: 140 NVLLHTSHET---KWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L + I A R A+L LY GLR+SE + L D L ++GKG Sbjct: 63 RAALEADEAAEPGERIKALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGS 122 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF-----------Q 244 K R+VPL R+A+ ++ L L LP G NP +F Q Sbjct: 123 KDRMVPLSRKAREALQKF-------LTLRDSLP------GSDDNPWLFPAFSESGHLARQ 169 Query: 245 RYIRQLRRYLGLPLS----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + R+L+ + H LRH+FA+HLL NG DLR++Q +LGH +STTQIYT+ Sbjct: 170 VFARELKGLAARAGLAASSVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTH 229 Query: 301 V 301 V Sbjct: 230 V 230 >gi|238925026|ref|YP_002938542.1| integrase/recombinase-like protein [Eubacterium rectale ATCC 33656] gi|259710431|sp|C4ZGY6|XERC_EUBR3 RecName: Full=Tyrosine recombinase xerC gi|238876701|gb|ACR76408.1| integrase/recombinase-like protein [Eubacterium rectale ATCC 33656] Length = 306 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 85/307 (27%), Positives = 146/307 (47%), Gaps = 23/307 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L+ ++ L + T+++Y D QF Y E I+I +++ ++ +I K Sbjct: 10 SYLEYCLAQKRLDEKTIKAYRIDLIQF------YNE--ISISDPCKIASYDLEKYIEKMH 61 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALN----EKQA 134 K +S++R ++ IK+F YL+ + I ++ ++ + ++ LP+ + EK Sbjct: 62 L-KYKPKSVRRKIASIKAFFHYLEYKNIILQNPFNKIQIHFREPVILPKTIPLYIVEKFL 120 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 T+ ++ K R++AI+ LL+ G+RISE +L ++ + I GKG Sbjct: 121 FTIYKQRSAAKTNYQKRNALRDAAIVELLFSTGIRISELCNLKISDVNLIDGVILIYGKG 180 Query: 195 DKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 K RI+ + S IL+ Y D + N F GKPL+ +R I + Sbjct: 181 SKERILQIGNSSVLNILKEYKNDFYNEIVQCN---HFFSSQSGKPLSDQSVRRMINKYAS 237 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 + L T H RH+FAT LL D+R IQ +LGH ++ TQIYT+V D ++ Sbjct: 238 LSSIDLHITPHMFRHTFATSLLEADVDIRYIQEMLGHSSINITQIYTHVAVSKQKDILI- 296 Query: 313 IYDQTHP 319 HP Sbjct: 297 ---NKHP 300 >gi|190571372|ref|YP_001975730.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018771|ref|ZP_03334579.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357644|emb|CAQ55088.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995722|gb|EEB56362.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 328 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 104/334 (31%), Positives = 162/334 (48%), Gaps = 39/334 (11%) Query: 16 KERQNWLQNLEI---------ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66 K+ QN +NL I E+ ++ TL+SY D Q FL E T T+ Sbjct: 4 KQPQNKKENLYITYYIDALVSEKSSTQNTLESYRSDLHQLEKFLL----EGGT--TLVGA 57 Query: 67 SYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKIT----TESNILNMRNLKK 121 S I+ +++ RTQK S+ R +S IK+F K L I +N +RN K Sbjct: 58 SKANIKDYVNFLRTQKKYKTSSISRKISAIKNFYKCLFNDGIIDFNPAPANDNELRNPKV 117 Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQN 180 S LP+ L+ ++ L++ V S K I + R AIL +LY G+R+SE +++ Sbjct: 118 SRPLPKYLSVQEIFLLMETVKKSASGSNKEISSKRLCAILDILYSSGMRVSELINMKLCE 177 Query: 181 IMD------DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGI 233 ++ + + I+GK + R + +++ Y + L N + LF G Sbjct: 178 VLHLVNGNGKEGYIIIKGKSSRERQILFNEQALQSLKNYLSIRDNLLPNNKKSDWLFPG- 236 Query: 234 RGKPLNPGVFQRY---IRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGH 289 KP P QR I++L R + + + H +RHS ATHLL++G ++ IQ ILGH Sbjct: 237 -DKPNKPITRQRVGQLIKELARKCDIDENKISPHVIRHSLATHLLNSGANIVLIQKILGH 295 Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323 LSTTQIYT++ ++ D + + +HP ITQ Sbjct: 296 TNLSTTQIYTHIANEKLKDKLAD----SHP-ITQ 324 >gi|299141119|ref|ZP_07034256.1| tyrosine recombinase XerD [Prevotella oris C735] gi|298577079|gb|EFI48948.1| tyrosine recombinase XerD [Prevotella oris C735] Length = 293 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 76/282 (26%), Positives = 138/282 (48%), Gaps = 11/282 (3%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L E S+LT+++Y D R F F+ + K + + + +R ++ + Sbjct: 6 FLDYLRFECNRSELTVKNYGDDLRSFE---KFFRDLKNPV-SWESVDLDVVRNWMERMMD 61 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + S+ R LS ++SF ++ RK+ + + + KK LP+ L EK+ L++ Sbjct: 62 EGNNAASINRRLSALRSFYRFALSRKLVDKDPVHGITGPKKGKPLPQFLKEKEMDRLLER 121 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 S E D R+ AI+ Y G+R+SE L + + + L++ GK +K RI+ Sbjct: 122 EYWTRSFE----DVRDRAIIMTFYETGIRLSELTGLDDKMVDFAEYQLKVTGKRNKQRII 177 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG-VFQRYIRQLRRYLGLPLS 259 P + + +Y + ++ + LF G+ ++ V +R R L + L Sbjct: 178 PFGEELCTTLRDYMESRDREVG-RLSEALFVTDEGQRMSASLVRERVKRSLSKVCTLK-K 235 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + H LRH+FAT +L++ + S++ +LGH LSTT+IYT+ Sbjct: 236 RSPHVLRHTFATAMLNHKAGIESVKKLLGHESLSTTEIYTHT 277 >gi|170761083|ref|YP_001787113.1| site-specific tyrosine recombinase XerC [Clostridium botulinum A3 str. Loch Maree] gi|169408072|gb|ACA56483.1| site-specific recombinase, phage integrase family [Clostridium botulinum A3 str. Loch Maree] Length = 326 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 92/302 (30%), Positives = 152/302 (50%), Gaps = 27/302 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY-------TE------EKITIQTIRQL 66 ++L L +G S+ T++SY+ D F FL Y TE + I+ + I+ + Sbjct: 19 DFLNYLRTIKGKSENTIESYKLDLIMFFRFLKLYKGMVPGETEFNDIEIKDISDEDIKNI 78 Query: 67 SYTEIRAFIS-KRRTQKIGDRSLKRSLSGIKSFLKYLK-KRKITTESNILNMRNLKKSNS 124 S T++ AF+S + G + R ++ +KSF ++L+ K KI E+ L + + K S Sbjct: 79 SLTDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGKVKIIKENPALELESPKISKR 138 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 P LTL ++ L +S + K+ + R+ I+ + CGLR+SE + NI +D Sbjct: 139 NP------VYLTLDESKRLLSSIDGKFKE-RDLCIVTMFLNCGLRLSELCGINISNIKND 191 Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVF 243 L + GKG+K R V L + K + +Y + + LF +N Sbjct: 192 --ILTVVGKGNKERTVYLNKACIKTLNDYLSARKEMGEKIVDKDALFLSKNYTRINKRSV 249 Query: 244 QRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNV 301 + +++ + GL + H LRH+ AT + +GG D+RS+Q ILGH +STTQIYT+V Sbjct: 250 EMLVKKYVKKAGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHV 309 Query: 302 NS 303 +S Sbjct: 310 DS 311 >gi|313206990|ref|YP_004046167.1| integrase family protein [Riemerella anatipestifer DSM 15868] gi|312446306|gb|ADQ82661.1| integrase family protein [Riemerella anatipestifer DSM 15868] Length = 291 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 80/305 (26%), Positives = 143/305 (46%), Gaps = 24/305 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + IE+ S TL SY D + F F+ +E + T+ + IR F+ Sbjct: 3 EKFLDYITIEKRYSLNTLASYSRDLQDFSDFV----KETEGVDTLISVDKKVIRNFVVYL 58 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALT 136 + R++ R LS ++SF YL K I + S + + +LK +P + E + L Sbjct: 59 SENNLSKRTINRKLSALRSFYIYLVKLGIISASPMETVSSLKFYGEKQIPFSQKEMENLQ 118 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 + + N I+ LLY G+R SE L +++ Q+ +R+ GKG+K Sbjct: 119 ---------NLLNEEKLLLNKLIIELLYQTGMRKSELCRLALKDVDFIQNRIRVVGKGNK 169 Query: 197 IRIVPLLPSVRKAILEYYDL--CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 +R +P+ ++++ + Y + P NL+ F G+ L + + Sbjct: 170 MREIPISENIKRELKLYLEKERKPTKENLDY---FFVRESGQKLTGKFVYSVVNDYLSAV 226 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 + H LRHSFATH+L NG ++ ++ ILGH L++TQ+YT+ + + + ++ Sbjct: 227 TSKKKKSPHVLRHSFATHVLENGAEIAQVKEILGHASLASTQVYTSTDV----NKLKKVL 282 Query: 315 DQTHP 319 + HP Sbjct: 283 NSFHP 287 >gi|300872289|gb|ADK38972.1| IntI4 [Vibrio sp. V90(2010)] Length = 290 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 63/194 (32%), Positives = 93/194 (47%), Gaps = 38/194 (19%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206 +D ++ + LLYG GLR+ E + L Q+I D +RI QGKG K R V L P + Sbjct: 95 VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 154 Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233 ++ I YYD P++ + P F+ + Sbjct: 155 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 214 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R +N Q+ +R+ + G+ + T HTLRHSFATHLL G D+R++Q +LGH + Sbjct: 215 RRHHMNETELQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQELLGHTDVK 274 Query: 294 TTQIYTNVNSKNGG 307 TTQIYT+V + Sbjct: 275 TTQIYTHVLDRGAA 288 >gi|255534753|ref|YP_003095124.1| Probable integrase [Flavobacteriaceae bacterium 3519-10] gi|255340949|gb|ACU07062.1| Probable integrase [Flavobacteriaceae bacterium 3519-10] Length = 356 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 84/304 (27%), Positives = 136/304 (44%), Gaps = 48/304 (15%) Query: 5 NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64 NLPE F Q + +G S+ TL++Y + Q L L + + Sbjct: 81 NLPEFKRF----------QEHLVLKGYSQSTLRTYSIEFAQLLYVLKGHP--------VN 122 Query: 65 QLSYTEIRA-FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 +LS +RA F+ K+ + + ++ +K + + + R ++ KK Sbjct: 123 ELSPERLRAYFLYCHENLKLSESEIHSRINAVKFYFEQVLHR----HKMFFDIPRPKKKQ 178 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 LP+ L++ + ++ +V + ++ IL + YG GLR+SE ++L +I Sbjct: 179 QLPKMLSKAEIKKIILSVE----------NPKHLMILKVCYGMGLRVSEVVALKLTDIDG 228 Query: 184 DQSTLRIQ---GKGDKIRIVP--LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238 +RI+ GK D+I ++P LLP +R L Y + LF G G Sbjct: 229 AGKRVRIEQAKGKKDRITVLPESLLPELRAYYLAY----------RPKTFLFEGQHGGQY 278 Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + Q ++ G+ H LRHSFATHLL G D+R IQ +LGH + TTQIY Sbjct: 279 SVRSAQAVFKKAVEKAGIHRKLGIHGLRHSFATHLLETGTDIRFIQELLGHNSIKTTQIY 338 Query: 299 TNVN 302 T+V Sbjct: 339 THVT 342 >gi|254819058|ref|ZP_05224059.1| site-specific tyrosine recombinase XerC [Mycobacterium intracellulare ATCC 13950] Length = 232 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 115/242 (47%), Gaps = 22/242 (9%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 +L R S +K+F + +R + ++ K +LP L + QAL + + Sbjct: 2 TLARRTSAVKAFTAWAVRRGLLDTDPAARLQVPKAHRTLPAVLRQDQALDAL-AAAKSGA 60 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 + + + R+ I+ +LY G+R+SE L ++ +R+ GKG+K R VP Sbjct: 61 QQGEPMALRDRLIVEMLYATGIRVSELCGLDIDDVDTRHRLVRVLGKGNKQRSVPFGAPA 120 Query: 207 RKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL--------GLP 257 +A+ + D P +N + L G RG+ ++ +RQ R + G P Sbjct: 121 AEALDAWLADGRPALVNADSGPALLLGARGRRID-------VRQARTVVHQTVAAVDGAP 173 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 H LRHS ATHLL G DLR +Q +LGH L+TTQ+YT+V + ++DQ Sbjct: 174 -DMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSR----LRAVHDQA 228 Query: 318 HP 319 HP Sbjct: 229 HP 230 >gi|257458423|ref|ZP_05623565.1| tyrosine recombinase XerC [Treponema vincentii ATCC 35580] gi|257444227|gb|EEV19328.1| tyrosine recombinase XerC [Treponema vincentii ATCC 35580] Length = 304 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 78/305 (25%), Positives = 137/305 (44%), Gaps = 32/305 (10%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 R S+ T+++Y D + F +LA E ++ ++S ++R F++ + S+ Sbjct: 16 RHFSEKTIEAYRNDLKLFSAWLA---ENELPFT---EVSKVQVRIFVADLGNRHFAPASV 69 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 R LS ++ +Y ++ + T + +RNLK+ + LPR L +A + Sbjct: 70 NRILSCVRGLYRYALQKGLCTTNPAALIRNLKQPDKLPRFLFPDEAERFCE---FPKEAG 126 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 W AR++A+ LY G R +E L ++ + ++GKG K R V ++ Sbjct: 127 ILWY-ARDAALFSSLYSTGCRAAELQGLKITDLKGECRWAIVRGKGSKERKVFFADFAQE 185 Query: 209 AILEYYD-----LCPFDLNLNIQLP-----LFRGIRGKPLNPG----VFQRYIRQLRRYL 254 A+ Y + ++ P LF RG L + RY L Y Sbjct: 186 AVQRYLTERAELIAYLKEQDGLKTPVAEEALFLNCRGGALTTQGIRYIIDRYTALLPNYK 245 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 L T H RHSFA+ ++ G D+R +Q +LGH ++TTQ YT++ + + ++Y Sbjct: 246 KL----TPHAFRHSFASMFITRGADIRVVQELLGHSNIATTQRYTHITAAQ----LQDLY 297 Query: 315 DQTHP 319 + HP Sbjct: 298 HKAHP 302 >gi|251771081|gb|EES51665.1| phage integrase family protein [Leptospirillum ferrodiazotrophum] Length = 324 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 110/226 (48%), Gaps = 12/226 (5%) Query: 81 QKIGD---RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 ++ GD RS R LS ++++ ++L+ + + R + LPR+L + + Sbjct: 65 ERRGDLSVRSRARFLSSVRAWTRFLELSGVRKDP-----RETPPAPRLPRSLPKILSQDE 119 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 V+ L+ + R+ AIL Y GLR+SE ++T + LR+ GKG K Sbjct: 120 VER-LIEAPDPHRPEGVRDRAILSFFYASGLRVSELATITADRVDLATGALRVMGKGAKE 178 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 RI L R + +Y L + P LF G PL I++ R G+ Sbjct: 179 RIAFLDERTRHLLSDY--LTTVRPAFAREHPELFLARDGAPLTRQALWTLIKKHGRAAGI 236 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + H LRHSFATHLL G D+RSIQ +LGH + TT+IYT+V+ Sbjct: 237 TSPLSPHVLRHSFATHLLEKGLDIRSIQLLLGHEDIRTTEIYTHVS 282 >gi|260642793|ref|ZP_05417338.2| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] gi|260620552|gb|EEX43423.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] Length = 368 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 54/150 (36%), Positives = 84/150 (56%), Gaps = 7/150 (4%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 ++ ++ L+Y GLR SE L+LTPQ+I+ ++ +RI GKG K R L + + +YY Sbjct: 209 KHRCMISLIYSAGLRRSELLNLTPQDIISERMLIRIAGKGKKCRYSLLSEKLLNELRDYY 268 Query: 215 DLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 Q LF G + G+ +P + +++ R G+ H LRH+FATHL Sbjct: 269 R------EYRPQKWLFEGEQAGEQYSPSALVKILKEAARKAGIKHRVHLHMLRHTFATHL 322 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 L G DLR+IQ ++GH + TT IY +V++ Sbjct: 323 LEQGTDLRTIQELMGHTDIKTTAIYLHVSN 352 >gi|255283924|ref|ZP_05348479.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469] gi|255265506|gb|EET58711.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469] Length = 305 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 76/312 (24%), Positives = 150/312 (48%), Gaps = 29/312 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ E + L K T+++Y D Q+ F+ K I+ + TE+ Sbjct: 10 YLEYCEYRKELDKNTIKAYRIDLCQYFTFICCDEPNKEKIE----VYITELH-------- 57 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTLVD 139 +K +++KR ++ +K+F YL++ +I + + ++ K++ +LPR + ++ L++ Sbjct: 58 KKYKQKTVKRKIASLKAFYNYLEEEEIISYNPFRKIKVKFKETITLPRIILREEIEKLLN 117 Query: 140 --------NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 NVL ++ R+ A++ +L+ G R+ E ++ ++ + +RI Sbjct: 118 YMYDCLKKNVLTGYKYQL-----RDIAVVEVLFATGARVYEISNIREDSVNLNSGQIRIM 172 Query: 192 GKGDKIRIVPLLPSVRKAIL-EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 GKG K R V + S A+L +YY ++ + F RG + +++ Sbjct: 173 GKGGKERYVQISNSSVLAVLRKYYKQNENEIKKS--GCFFINNRGNRYTEQSIRSMLKKY 230 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 + G+ + T H RHSFAT+L+ G D+ +Q I GH + TTQIY ++ +K + + Sbjct: 231 AKQAGIARNITPHMFRHSFATYLIEEGVDVSCVQQIRGHSSIKTTQIYIHIAAKKQAEIL 290 Query: 311 MEIYDQTHPSIT 322 E++ + SI Sbjct: 291 REMHPRNSMSIA 302 >gi|86742264|ref|YP_482664.1| phage integrase [Frankia sp. CcI3] gi|86569126|gb|ABD12935.1| tyrosine recombinase XerC subunit [Frankia sp. CcI3] Length = 385 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 68/174 (39%), Positives = 96/174 (55%), Gaps = 11/174 (6%) Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL-LPSVRK 208 + ++ R++ +L LLYG G+R+SE L +I DD+ LR+ GKG K R VP +P+V Sbjct: 217 RAVELRDALVLELLYGSGIRVSELCGLDLGHIDDDRRLLRVLGKGGKERSVPFGVPAV-- 274 Query: 209 AILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTL 265 A L + P + L G+RG L+P +R + R G+ P T H L Sbjct: 275 AALRSWRSTGRPRLMTARSGRALLLGLRGGRLDPRTVRRIL-TTRVAAGVAPAGLTPHGL 333 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 RHS ATH+L G DLRS+Q LGH L+TTQIYT+V + + ++Q HP Sbjct: 334 RHSAATHMLEGGADLRSVQEFLGHASLATTQIYTHVTPER----LRAAFEQAHP 383 >gi|56476505|ref|YP_158094.1| integrase/recombinase [Aromatoleum aromaticum EbN1] gi|58616507|ref|YP_195636.1| integrase [Azoarcus sp. EbN1] gi|56312548|emb|CAI07193.1| integrase/recombinase [Aromatoleum aromaticum EbN1] gi|56315969|emb|CAI10612.1| probable integrase [Aromatoleum aromaticum EbN1] Length = 309 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 86/300 (28%), Positives = 138/300 (46%), Gaps = 33/300 (11%) Query: 9 IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68 I SF + RQ L+++ + R L+ T +Y + + +E L Sbjct: 13 IRSFAMTPLRQRMLEDMGV-RNLAPNTQSAYLKQVSAYARYFDCSPDE---------LGP 62 Query: 69 TEIRAF-ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127 ++RA+ + +T+K+ ++ + ++ K KR E + R+ K LP Sbjct: 63 EQVRAYQVYLTQTRKLTPSTVSVATGALRFLYKVTLKRAWAVEEIPMPKRSFK----LPV 118 Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 L+ ++ + +V H H T IL Y GLR+SEA L +I + Sbjct: 119 VLSREEVSQFLASVD-HLMHRT---------ILMTAYAAGLRVSEATHLKVSDIDSQRMV 168 Query: 188 LRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQR 245 LR+ QGKG K R V L P + +A+ Y+ + L LF G + G+P+ Sbjct: 169 LRVDQGKGRKDRYVMLSPRLLEALRVYWK------SARPTLWLFPGDVPGQPITRNAVGL 222 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 ++ RR G+ T H+LRH+FATHLL +G D+R+IQ +LGH L+TT Y V + Sbjct: 223 ACQKARRACGIRKPITPHSLRHAFATHLLESGTDVRTIQLLLGHRSLATTSRYLKVATST 282 >gi|59800775|ref|YP_207487.1| hypothetical protein NGO0329 [Neisseria gonorrhoeae FA 1090] gi|194098059|ref|YP_002001107.1| XerD [Neisseria gonorrhoeae NCCP11945] gi|239998519|ref|ZP_04718443.1| XerD [Neisseria gonorrhoeae 35/02] gi|240013644|ref|ZP_04720557.1| XerD [Neisseria gonorrhoeae DGI18] gi|240016083|ref|ZP_04722623.1| XerD [Neisseria gonorrhoeae FA6140] gi|240117462|ref|ZP_04731524.1| XerD [Neisseria gonorrhoeae PID1] gi|240120714|ref|ZP_04733676.1| XerD [Neisseria gonorrhoeae PID24-1] gi|240123018|ref|ZP_04735974.1| XerD [Neisseria gonorrhoeae PID332] gi|240125270|ref|ZP_04738156.1| XerD [Neisseria gonorrhoeae SK-92-679] gi|240127724|ref|ZP_04740385.1| XerD [Neisseria gonorrhoeae SK-93-1035] gi|268594379|ref|ZP_06128546.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 35/02] gi|268603162|ref|ZP_06137329.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID1] gi|268681643|ref|ZP_06148505.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID332] gi|268683870|ref|ZP_06150732.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-92-679] gi|268686113|ref|ZP_06152975.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-93-1035] gi|293399522|ref|ZP_06643675.1| tyrosine recombinase XerD [Neisseria gonorrhoeae F62] gi|59717670|gb|AAW89075.1| putative integrase/recombinase [Neisseria gonorrhoeae FA 1090] gi|193933349|gb|ACF29173.1| XerD [Neisseria gonorrhoeae NCCP11945] gi|268547768|gb|EEZ43186.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 35/02] gi|268587293|gb|EEZ51969.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID1] gi|268621927|gb|EEZ54327.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID332] gi|268624154|gb|EEZ56554.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-92-679] gi|268626397|gb|EEZ58797.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-93-1035] gi|291610091|gb|EFF39213.1| tyrosine recombinase XerD [Neisseria gonorrhoeae F62] gi|317163795|gb|ADV07336.1| hypothetical protein NGTW08_0364 [Neisseria gonorrhoeae TCDC-NG08107] Length = 291 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 80/281 (28%), Positives = 137/281 (48%), Gaps = 16/281 (5%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L+ L ++R LS+ TL SY D + L+ +T++ ++ A + Q Sbjct: 10 LETLWLDRRLSRNTLDSYRRDLEKIARRLSLCG------RTLKDADEADLAAAVYVDGEQ 63 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 + S R+LS K ++++ + ++ ++ K ++P + E+Q L+ Sbjct: 64 R---SSQARALSACKRLYVWMEREGMRADNPTRLLKPPKIDRNIPTLITEQQISRLLAAP 120 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 T H R+ A+L L+Y GLR+SEA+ L N+ D+ + GKGDK R+VP Sbjct: 121 DTDTPH-----GLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITTLGKGDKQRMVP 175 Query: 202 LLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 + + YY + P L LF + ++ + +++ G+ Sbjct: 176 MGQESAYWVERYYTEARPLLLKGRSCDALFVSQKKTGISRQLAWMIVKEYAGRAGIG-HI 234 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + H+LRH+FATHL+ +G DLR +Q +LGH L+TTQIYT+V Sbjct: 235 SPHSLRHAFATHLVRHGLDLRVVQDMLGHADLNTTQIYTHV 275 >gi|291557723|emb|CBL34840.1| Site-specific recombinase XerD [Eubacterium siraeum V10Sc8a] Length = 357 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 93/347 (26%), Positives = 156/347 (44%), Gaps = 51/347 (14%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAF----------YTEEKIT------IQTIR 64 +L L + S+LT +Y D R F+ FL ++E KI+ I+ + Sbjct: 21 YLNYLTTIKNRSQLTALNYYTDLRMFMRFLKVKNKLVDANEDFSEIKISDLDDKYIKAVT 80 Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNILNMRNLKKSN 123 E +F R+ + RS R ++ F K+L K S +LN+ N Sbjct: 81 LTDAMEFLSFTVSERSNQAKARS--RKAVSLRQFYKFLTNNKAWFAASPMLNLELPSPKN 138 Query: 124 SLPRALNEKQALTLVDNVLLHTSHE--TKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 +LP+ L ++ LLH + + W+D R+ A++ + CG+R+SE + +T + Sbjct: 139 ALPKHLTLQEC-----GQLLHEGFKEFSSWMDYRDYAMIIMFLNCGMRLSELVGITVNDF 193 Query: 182 MD--DQS-------TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---- 228 ++ D S ++++ GKG+K RIV L A+ +Y + ++ P Sbjct: 194 VENIDPSQPCVKYLSVKVLGKGNKERIVYLNEQCVDAVTKYTEA-----RKSVADPKEKA 248 Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 LF RG + ++ I + GL + H LRH+ AT + NG D+R ++ +L Sbjct: 249 LFISKRGNRITNRRVEQIIDDRLKACGLAGKGISVHKLRHTAATLMYQNGVDVRVLKEVL 308 Query: 288 GHFRLSTTQIYTNV------NSKNGGDWMMEIYDQTHPSITQKDKKN 328 GH L+TTQIYT+V ++ N M D P + Q + KN Sbjct: 309 GHENLNTTQIYTHVVNTQLRDAINSNPVMDIKNDLPEPDLKQDEDKN 355 >gi|163753743|ref|ZP_02160866.1| tyrosine type site-specific recombinase [Kordia algicida OT-1] gi|161325957|gb|EDP97283.1| tyrosine type site-specific recombinase [Kordia algicida OT-1] Length = 428 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 81/294 (27%), Positives = 142/294 (48%), Gaps = 32/294 (10%) Query: 13 ELLKERQNWLQNLEIER----GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68 ++L+E Q N+ I++ S+ T++ Y+ F + Y ++IT + IR Sbjct: 144 KVLREHQRDCPNIVIDKLKALRYSESTIKIYKSFLSIFFTYHYAYEPQEITNEMIR---- 199 Query: 69 TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 T +R + +R +I + + ++ IK + + + + + + K+S LP Sbjct: 200 TYMRYLVQER---EISESYQNQMINAIKFYYE----KVLGGKQQTYFIDRPKRSKPLPIV 252 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 L++K+ + L+ ++ + ++ IL ++Y CGLR+SE + L +I +++ + Sbjct: 253 LSQKETIQLLKSIP----------NLKHKTILTVIYSCGLRVSELIDLKLSSIYLEENKI 302 Query: 189 RI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 I GKG K R V L A+ + + + L G +G Q++I Sbjct: 303 HIVAGKGKKDRYVTL------AVRTKKLIKIYIKKYAPEHYLIEGQKGGKYATSSIQKFI 356 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 ++ GL + T HTLRHSFATHLL G LR IQ ILGH TT+IYT++ Sbjct: 357 KKYSNEAGLTKNVTPHTLRHSFATHLLEKGISLRYIQYILGHQNSKTTEIYTHI 410 >gi|307720464|ref|YP_003891604.1| integrase family protein [Sulfurimonas autotrophica DSM 16294] gi|306978557|gb|ADN08592.1| integrase family protein [Sulfurimonas autotrophica DSM 16294] Length = 278 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 82/304 (26%), Positives = 150/304 (49%), Gaps = 38/304 (12%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 K ++ +L +LE RG S+LT+++Y + ++ E+ T+ + R +I Sbjct: 7 KYKKEFLVSLEEYRGYSELTVKTYADVLGEAFQYIEIVQEDGHTV-----FNLMPYRIYI 61 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 + + +++ + LS I+SF+++L ++ + + ++K + +LP+ ++ L Sbjct: 62 AG-----LNAKTISKKLSAIRSFVEFLNEQGLHVA--LQADESIKVAKTLPKPVSHAHIL 114 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 + D + + +LY GLRISE SL NI ++ +R+ GKG+ Sbjct: 115 EALSQS-----------DLQEKLLAVMLYTLGLRISELASLELHNITNEW--IRVIGKGN 161 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 K R +PLL + R I EY L F ++ LF G+ L+ + I ++ + + Sbjct: 162 KQRDIPLLGTTRALIDEY--LSTFV----VKKFLFEK-NGERLSENSLRYMITKIFKRVA 214 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 L + T H LRHS+A+ LL+ G + + +LGH ++TTQIYT K G + Y+ Sbjct: 215 LKV--TPHQLRHSYASSLLNGGAPIVDVSELLGHSSMATTQIYT----KLGSALKQQNYN 268 Query: 316 QTHP 319 + HP Sbjct: 269 KAHP 272 >gi|269126616|ref|YP_003299986.1| integrase family protein [Thermomonospora curvata DSM 43183] gi|268311574|gb|ACY97948.1| integrase family protein [Thermomonospora curvata DSM 43183] Length = 338 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 105/232 (45%), Gaps = 26/232 (11%) Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 R +S ++ + +L + T ++ + LP AL + Q +V + T Sbjct: 90 RRISALRGWCAWLVRTGHLTADPTTDLETPRLPRRLPVALTDAQLAAIVQ------AAST 143 Query: 150 KWIDAR------NSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIV 200 W AR + A+L L G G R E ++L +++ D LR++GKG R V Sbjct: 144 PWQGARAQWVRLDRALLALFAGAGARTGEVVALRVGDVICEEDGGGLLRLRGKGGAHRNV 203 Query: 201 PLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 PL + + +Y D L PFD + PL GK + G+ + + Q R Sbjct: 204 PLHADAMQPVTDYLDERRALLGPFD----AEDPLLVARNGKAITTGMIEYRVDQWFRRAA 259 Query: 256 L--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + P AH RH++A +L NG L +Q++LGH L+TT IYT V ++ Sbjct: 260 VRRPEGELAHVFRHTYAVGVLQNGASLNELQAVLGHQNLATTSIYTKVAAEG 311 >gi|300872279|gb|ADK38967.1| IntI4 [Vibrio sp. V49(2010)] Length = 297 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 65/201 (32%), Positives = 95/201 (47%), Gaps = 38/201 (18%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI 210 +D ++ + LLYG GLR+ E + L Q+I D +RI QGKG K R V L + + + Sbjct: 95 VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYQHL 154 Query: 211 LE-------YYDL----------------------CPFDLNLNIQLPLFR--------GI 233 E YYD P++ + P F+ + Sbjct: 155 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 214 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R +N V Q+ +R+ + G+ + T HTLRHSFATHLL G D+R++Q LGH + Sbjct: 215 RRHHINETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVK 274 Query: 294 TTQIYTNVNSKNGGDWMMEIY 314 TTQIYT+V + + IY Sbjct: 275 TTQIYTHVLDRWCSSIIKPIY 295 >gi|254418058|ref|ZP_05031782.1| site-specific recombinase, phage integrase family protein [Brevundimonas sp. BAL3] gi|196184235|gb|EDX79211.1| site-specific recombinase, phage integrase family protein [Brevundimonas sp. BAL3] Length = 306 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 62/174 (35%), Positives = 91/174 (52%), Gaps = 18/174 (10%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 A++ + Y GLR+SE L L + D + L ++GKG K R+ PL + R+AI + L Sbjct: 134 ALVEMAYASGLRVSELLGLKVDAVRRDPAYLIVRGKGGKERLAPLNTAAREAIKAW--LT 191 Query: 218 PFDLNLN------IQLP----LFRGI-RGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTL 265 D L + P LF R L P F + + + G+ P + H L Sbjct: 192 ARDARLKGKDGRKPEAPDSPWLFPSSGRTGHLTPRRFAQLLDEAAPVAGIDPARVSPHVL 251 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 RH+FATHLL G DLR +Q++LGH ++TTQIYT+V + D + ++ Q HP Sbjct: 252 RHAFATHLLEGGADLRVVQTLLGHADIATTQIYTHVAT----DRLAQVVQQNHP 301 >gi|23452624|gb|AAN33109.1| VvuIntIA [Vibrio vulnificus] Length = 320 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 90/319 (28%), Positives = 140/319 (43%), Gaps = 63/319 (19%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRS 87 R + T+Q+Y +Q++IF K+ + L+ T + F+S QK+ ++ Sbjct: 16 RHYASKTIQAYISWIKQYIIF------HKMAHPST--LNETHVEEFLSYLALEQKVAAKT 67 Query: 88 LKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 +L+ I + +Y + T SN + + LP L + + +L+ + Sbjct: 68 QALALNSIMFLYREYFR----TPLSNEIKFQKSLLDRKLPVVLTKSELRSLIQH------ 117 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----- 200 ID R + LLYG GLR+ E + L Q+I LRI QGKG K R V Sbjct: 118 -----IDPRYKLHIMLLYGSGLRVMECVRLRVQDIDYHYGALRIWQGKGGKNRTVTLAKE 172 Query: 201 --PLLPSVRKAILEYY--DL--------------------CPFDLNLNIQLPLFRG---- 232 P+L + L YY D+ D N + P + Sbjct: 173 LFPMLKQQEELALRYYQKDINTPGYSGVWLTHSLQRKYRGAEMDFNWHYLFPSEKLSIDP 232 Query: 233 ----IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288 +R +N QR +++ + G+ + T HTLRHSFATHLL +G D+R++Q LG Sbjct: 233 ESNLLRRHHINEQSLQRAVKRAAKDAGIEKTVTCHTLRHSFATHLLESGADIRTVQEQLG 292 Query: 289 HFRLSTTQIYTNVNSKNGG 307 H + TTQIYT+V + G Sbjct: 293 HSDVKTTQIYTHVLERGAG 311 >gi|47094600|ref|ZP_00232245.1| integrase/recombinase XerC [Listeria monocytogenes str. 4b H7858] gi|47017024|gb|EAL07912.1| integrase/recombinase XerC [Listeria monocytogenes str. 4b H7858] Length = 241 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 16/238 (6%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 ++ R +S ++SF +L + + E+ + + K LP+ ++ L V Sbjct: 13 TVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEMEALFQVVY---- 68 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 + + + R+ +L +LYG G+R+SE + ++ + I+GKG+K R VP Sbjct: 69 EDNETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGNKERYVPFGVYA 128 Query: 207 RKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 AI +Y P NL + L G PL + + ++ L Sbjct: 129 EDAITDY---LPERANLMSRYKKSHDALLVNHYGDPLTTRGIRYCLSKIISKASLTRKIH 185 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRH+FAT LL+NG D+R++Q +LGH LS+TQIYT+V ++ + Y + HP Sbjct: 186 PHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH----LKSTYMKHHP 239 >gi|326387724|ref|ZP_08209330.1| phage integrase [Novosphingobium nitrogenifigens DSM 19370] gi|326207770|gb|EGD58581.1| phage integrase [Novosphingobium nitrogenifigens DSM 19370] Length = 300 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 88/303 (29%), Positives = 137/303 (45%), Gaps = 29/303 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECD---TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 +L L ERG + TL +Y D Q L LA + E+ A ++ Sbjct: 14 FLAMLSAERGAAANTLAAYRRDLAGAAQVLGDLALADRGALA-------RLGEVWADLAP 66 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 SL R S ++ F +L + + + + ++ LPR L+ + L Sbjct: 67 A--------SLARKASALRQFYAFLVEEGLREDDPGDALPRVRARRPLPRLLDHGEIGAL 118 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 ++ + E R A++ LLYG GLR +E +SL + D L I GKG + Sbjct: 119 F-SLAEADAAEGDPAALRLLALVELLYGSGLRATELVSLPLVAVPRDAPFLAITGKGGQQ 177 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL- 256 R+VP+ A+ ++ + P +F RG L + +R L GL Sbjct: 178 RLVPVGERAGAALRDWLRVRPAGGRY-----VFPSPRGGHLTRVRLFQLLRDLALRAGLD 232 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 P + H LRH+FATHLL G DLR +Q++LGH ++TTQIYT+V+ G ++ + +Q Sbjct: 233 PEKVSPHVLRHAFATHLLEGGADLRVLQTLLGHADIATTQIYTHVD----GARLVSLVNQ 288 Query: 317 THP 319 HP Sbjct: 289 RHP 291 >gi|300872267|gb|ADK38961.1| IntI4 [Vibrio sp. V1(2010)] Length = 293 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 92/188 (48%), Gaps = 38/188 (20%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206 +D ++ + LLYG GLR+ E + L Q+I D +RI QGKG K R V L P + Sbjct: 95 VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 154 Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233 ++ I YYD P++ + P F+ + Sbjct: 155 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 214 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R +N V Q+ +++ + G+ + T HTLRHSFATHLL G D+R++Q LGH + Sbjct: 215 RRHHMNETVLQKAVKRAAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVK 274 Query: 294 TTQIYTNV 301 TTQIYT+V Sbjct: 275 TTQIYTHV 282 >gi|188585653|ref|YP_001917198.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350340|gb|ACB84610.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 283 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 65/191 (34%), Positives = 98/191 (51%), Gaps = 24/191 (12%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 KK LP L++K+ L L+ T + ++ AIL ++Y GLR+ EA+ L P+ Sbjct: 97 KKERKLPNVLSQKEVLELL----------TVTTNIKHKAILCIIYSSGLRVGEAVRLKPE 146 Query: 180 NIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRG 235 ++ +Q + I QGKG K R L + K + YY I P LF G Sbjct: 147 DLDGEQKIIHIKQGKGRKDRYTILSDNALKILRNYYK---------IYQPKKWLFPGQNE 197 Query: 236 K-PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 L+ Q+ ++ ++ + + H+LRHSFATHLL G DLR IQ +LGH T Sbjct: 198 NLHLSERSVQKIFQKAKQKANINKKVSVHSLRHSFATHLLEAGTDLRYIQKLLGHESSKT 257 Query: 295 TQIYTNVNSKN 305 T+IYT++ ++N Sbjct: 258 TEIYTHITTQN 268 >gi|312622379|ref|YP_004023992.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002] gi|312202846|gb|ADQ46173.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002] Length = 328 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 89/295 (30%), Positives = 145/295 (49%), Gaps = 37/295 (12%) Query: 35 TLQSYECDTRQFLIFLA------FYTEEKIT-----------IQTIRQLSYTEIRAFISK 77 T++ Y D R FL +L EKI I+ ++ L+ + + + S Sbjct: 27 TIKEYYYDLRNFLRYLKAKDLNMLSQIEKIEDLENIDVSNFEIEKLKALTLSNLYEYFSF 86 Query: 78 RRTQ-KIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPRAL---NEK 132 T G + R ++ I+SF KYL K K+ ++ ++ + K PR L K Sbjct: 87 LATHFNNGPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYLTLDESK 146 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + L+ +D E K R+ AI+ + CGLR+SE +++ +I DD LRI G Sbjct: 147 KLLSAIDG-------ENK---ERDFAIITIFLNCGLRLSELVNINLSDIKDDM--LRIVG 194 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 KG+K RI+ L + + AI Y + P + + + LF R K ++ Q + + + Sbjct: 195 KGNKERIIYLNKACKDAIENYLKVRPTE-GVKDKDALFLSERKKRISRRTVQYIVEKYVK 253 Query: 253 YLGL-PLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNSKN 305 G+ +AH LRH+ AT + +G D+RS+Q+ILGH +STT+IYT+VN + Sbjct: 254 MAGINQKKISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDD 308 >gi|319899487|ref|YP_004159584.1| integrase/recombinase XerD [Bartonella clarridgeiae 73] gi|319403455|emb|CBI77026.1| integrase/recombinase XerD [Bartonella clarridgeiae 73] Length = 312 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 86/314 (27%), Positives = 153/314 (48%), Gaps = 26/314 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY--TEIRAFISKR 78 +L+ + ERG S TL +Y+ D + + + K++ ++ S ++ +S Sbjct: 10 FLEMMSAERGASVRTLFAYQHDLQ--------WAQNKLSSYSLSFFSAQREDLINLLSLM 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 +T S R LS ++ F ++L + + ++ + ++ LP+ ++E L+ Sbjct: 62 QTAGCAATSQARRLSTLRQFFQFLYAEGLRGDDPSSDIDSPRQGRPLPKIISEDAVTKLL 121 Query: 139 DNVLLHTSH----ETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 D L T ++ A R +L +LY GLRISE +SL Q + + + ++GK Sbjct: 122 DFAQLETDQAEYGSQEYFRALRFQVLLEMLYATGLRISELVSLPVQAVRRKEQFILVRGK 181 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLF--RGIRGKPLNPGVFQRYIRQL 250 G+K R+V L R+ + ++ L D + + LF R G V R ++ L Sbjct: 182 GEKERVVLLSEKARQILSKW--LVLRDQGKDAKSFYLFPARSSTGYIARQFV-ARGLKDL 238 Query: 251 RRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 + G+ + H LRH+FA+HLL NG DLR++Q +LGH +STTQ+YT+V Sbjct: 239 AKRAGIQSENFSPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQVYTHVLEAR---- 294 Query: 310 MMEIYDQTHPSITQ 323 + + ++ HP + Q Sbjct: 295 LHRLVNEHHPLVDQ 308 >gi|309781409|ref|ZP_07676145.1| tyrosine recombinase XerD [Ralstonia sp. 5_7_47FAA] gi|308919822|gb|EFP65483.1| tyrosine recombinase XerD [Ralstonia sp. 5_7_47FAA] Length = 311 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 85/304 (27%), Positives = 147/304 (48%), Gaps = 20/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q + L +E GL++ TL +Y D L A + E+ ++I + ++ + + R Sbjct: 23 QRFCDALWLEDGLARNTLDAYRRD----LTLYAHWLAERN--KSIAETEDDDLADYFAAR 76 Query: 79 RTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 + S R + K F ++ L++ ++T+ + L + K+ P+ L+E Q L Sbjct: 77 HAESRAS-SANRRRTVFKRFFQWALREHVVSTDPSRL-LPTAKQPPRFPKTLSETQVEAL 134 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDK 196 +D + T + R+ A++ L+Y GLR+SE ++L + +++ + GKG K Sbjct: 135 IDAPDVDTP-----LGLRDRAMIELMYASGLRVSEIVALKTVEVGLNEGVVRVVGGKGGK 189 Query: 197 IRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 R+VP + Y D L LF RG+ + F I++ Sbjct: 190 DRLVPFGAEAGDWLRRYLRDGRTALLGERTADALFVTARGEGMTRQAFWYLIKRYALLAD 249 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V + + ++ Sbjct: 250 IHAPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARER----LRTLHA 305 Query: 316 QTHP 319 Q HP Sbjct: 306 QHHP 309 >gi|302387936|ref|YP_003823758.1| integrase family protein [Clostridium saccharolyticum WM1] gi|302198564|gb|ADL06135.1| integrase family protein [Clostridium saccharolyticum WM1] Length = 295 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 83/293 (28%), Positives = 141/293 (48%), Gaps = 23/293 (7%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 SK T SY+ D Q FL E+ I+ + +++ T + ++I + ++ R Sbjct: 19 SKNTEVSYQRDLMQLASFL-----EQQGIREVDKVTKTSLTSYILHLEKEGKATTTISRC 73 Query: 92 LSGIKSFLKY-LKKRKITTE-SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 L+ +K+F + K+ +I + + +L ++K ++E V+++L ET Sbjct: 74 LASMKAFFHFECKEGRIQKDPAELLKAPKVEKKAPTILTVDE------VNSLLSQPGGET 127 Query: 150 KWIDARNSAILYLLYGCGLRISEALSL--TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207 + R+ A+L LLY G+R+SE + L T N+ T R + K R+VP + Sbjct: 128 PK-ELRDRAMLELLYATGIRVSELIHLKKTDVNLSIGYITCRDE---HKERMVPFGKVAK 183 Query: 208 KAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 A+ Y + + + P LF GK ++ F + I+ G+ T HTLR Sbjct: 184 LALSAYMERGRVYFLRDQESPWLFTNCNGKSMSRQGFWKIIKFYGDKAGIKADITPHTLR 243 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HSFA HLL NG D+ ++Q++LGH ++TTQ+Y N G+ + Y HP Sbjct: 244 HSFAAHLLRNGADIHAVQAMLGHSDMATTQMYMNYTQ---GEDLRRSYTGAHP 293 >gi|301162387|emb|CBW21932.1| putative tyrosine recombinase [Bacteroides fragilis 638R] Length = 308 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 54/150 (36%), Positives = 84/150 (56%), Gaps = 7/150 (4%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 ++ ++ L+Y GLR SE L+LTPQ+I+ ++ +RI GKG K R L + + +YY Sbjct: 149 KHRCMISLIYSAGLRRSELLNLTPQDIISERMLIRIAGKGKKCRYSLLSEKLLNELRDYY 208 Query: 215 DLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 Q LF G + G+ +P + +++ R G+ H LRH+FATHL Sbjct: 209 R------EYRPQKWLFEGEQAGEQYSPSALVKILKEAARKAGIKHRVHLHMLRHTFATHL 262 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 L G DLR+IQ ++GH + TT IY +V++ Sbjct: 263 LEQGTDLRTIQELMGHTDIKTTAIYLHVSN 292 >gi|307269737|ref|ZP_07551067.1| phage integrase, SAM-like domain protein [Enterococcus faecalis TX4248] gi|306513847|gb|EFM82449.1| phage integrase, SAM-like domain protein [Enterococcus faecalis TX4248] Length = 301 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 79/294 (26%), Positives = 143/294 (48%), Gaps = 34/294 (11%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 RG SK+T+++Y+ R F E + QL I+++I + +++ ++ Sbjct: 17 RGFSKITIKNYKSKLRNTANFFKSINVEPL------QLEKKHIKSWIIDMQEKEMQASTI 70 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE---KQALTLVDNVLLHT 145 S+S +K Y+ K + +++ LK+ + LN+ KQ LT+ Sbjct: 71 NVSVSRLKKLFDYMLIEKYIDYNPFVDIERLKEQRKVIYPLNDYEIKQMLTVA------K 124 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 H K I RN IL L+ CGLRISE + ++IM++Q +R + K +K R V + P Sbjct: 125 KHPYKHIAQRNVVILMLMIECGLRISEVCEIRDEDIMNNQIIIR-KSKNNKDRAVAVSPI 183 Query: 206 VRKAILEY-------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-- 256 ++K I++Y Y L +L + L GK LN + ++++++ + + Sbjct: 184 LKKEIIKYQRIKKRKYGLLEGNLFIVSNL-------GKKLNEKSIWQIMQEIKKQIDIRD 236 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 + + HTLRH++A+ L NG D+ ++ +GH + TQ Y V + N D++ Sbjct: 237 CVRFSGHTLRHTYASMQLRNGLDIYTLSLNMGHSSIEMTQRY--VQTLNSEDFI 288 >gi|332185243|ref|ZP_08386992.1| phage integrase, N-terminal SAM-like domain protein [Sphingomonas sp. S17] gi|332014967|gb|EGI57023.1| phage integrase, N-terminal SAM-like domain protein [Sphingomonas sp. S17] Length = 299 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 69/238 (28%), Positives = 121/238 (50%), Gaps = 14/238 (5%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--LLH 144 ++ R + ++ F +L + + + + + SLP+ L+ L + + Sbjct: 66 TVARKAAALRRFYAFLHEEGLRVDDPASALPRPGQRRSLPKVLSHADIDRLFAAIGERIG 125 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 +H D R +A++ LLYG GLR SE ++L I D+ L ++GKG R+VP+ Sbjct: 126 VAHPAP-NDLRLAALIELLYGSGLRASELVALPRNAIHPDRPFLILRGKGGAERMVPISD 184 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS-TTAH 263 R A+ + P D + LF G + + L+ + ++ L G+P + H Sbjct: 185 RARAAVAAWRVHVPTD-----KAWLFPGGK-RHLSRIRLYQLVKALAAEAGIPPDRVSPH 238 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321 LRH+FATHLL G DLR++Q++LGH ++TT+IYT+V + ++E+ + HP + Sbjct: 239 VLRHAFATHLLGGGADLRAVQAMLGHADIATTEIYTHVEATQ----LVELVNARHPLV 292 >gi|225028233|ref|ZP_03717425.1| hypothetical protein EUBHAL_02505 [Eubacterium hallii DSM 3353] gi|224954412|gb|EEG35621.1| hypothetical protein EUBHAL_02505 [Eubacterium hallii DSM 3353] Length = 303 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 80/310 (25%), Positives = 144/310 (46%), Gaps = 36/310 (11%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ E + L TL++Y D RQF+ F+ K I+ R ++Y Sbjct: 10 YLEYCEYRKELDWNTLKAYRIDLRQFVEFIEGEEPSKEKIE--RYITYLH---------- 57 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTLVD 139 +K +++KR ++ +K F YL++ +I E+ + + K+ LPR + ++ L++ Sbjct: 58 KKYKQKTVKRKIASLKVFYAYLEEEEIIEENPMRRVHTKFKEERVLPRIIPREEIEKLLN 117 Query: 140 NVL--LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 + L S + + R+ A++ + + G R+ E ++ +NI + +R GKG K Sbjct: 118 CMYKELRESEKNQRFILRDVAVVEVFFATGARVYEIANIRIENINLESGVIRFMGKGGKE 177 Query: 198 RIVPL-LPSVRKAILEYY-------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 RIV + SV + + YY C + F R + +++ Sbjct: 178 RIVQIGEESVIELLNRYYTENKEEIHACGY---------FFINKRKSRFTEQSIRLMLKK 228 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 + + + T H RHSFAT+L+ G D+ +Q ILGH + TTQIY +V+S+ D Sbjct: 229 YTKQAKIERNITPHMFRHSFATYLIEEGVDISCVQQILGHSSIKTTQIYIHVSSQKQADI 288 Query: 310 MMEIYDQTHP 319 + E+ HP Sbjct: 289 LREM----HP 294 >gi|182420240|ref|ZP_02951470.1| tyrosine recombinase [Clostridium butyricum 5521] gi|237666087|ref|ZP_04526075.1| tyrosine recombinase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182375938|gb|EDT73529.1| tyrosine recombinase [Clostridium butyricum 5521] gi|237659034|gb|EEP56586.1| tyrosine recombinase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 323 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 86/301 (28%), Positives = 144/301 (47%), Gaps = 27/301 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFL-----------AFYTEE--KITIQTIRQL 66 N+L + +G SK TL Y D F FL F E I + IR + Sbjct: 15 NYLSYMSSIKGSSKKTLHVYTTDLILFFRFLKRDRNLVNIDIPFEEIEIYDINKEFIRSI 74 Query: 67 SYTEIRAFISKRRTQKI-GDRSLKRSLSGIKSFLKYLKKRKITTESNIL-NMRNLKKSNS 124 ++I +F+S ++ + + +R ++ +KSF ++L + ++++ N+ K Sbjct: 75 DSSDIYSFLSYTEFERNNSNVTRRRKIACLKSFFRFLYLKLHMIDTDLCENLERPKAKPK 134 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 LP L E + ++L++N+ T R+ I+ L GLR+SE S+ +I DD Sbjct: 135 LPVYLKENECVSLLNNI-------TGRNIVRDRCIITLFINTGLRLSELCSINISSIKDD 187 Query: 185 QSTLRIQGKGDKIRIVPLLPSVR---KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241 TL + GKG+K R + L S + L Y + + LF + + +NP Sbjct: 188 --TLVVLGKGNKERYIYLNESCLSQLEVYLRYRSEKYIPIKEGHEDALFLSEQKQRINPR 245 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + + + + L +AH LRH+ AT L G D+RSIQ++LGH ++TTQIYT+V Sbjct: 246 SVENIVVKAVKSACLDKHYSAHKLRHTCATLLYKAGADIRSIQTLLGHESVATTQIYTHV 305 Query: 302 N 302 + Sbjct: 306 D 306 >gi|305666658|ref|YP_003862945.1| tyrosine type site-specific recombinase [Maribacter sp. HTCC2170] gi|88707463|gb|EAQ99707.1| tyrosine type site-specific recombinase [Maribacter sp. HTCC2170] Length = 363 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 78/276 (28%), Positives = 134/276 (48%), Gaps = 23/276 (8%) Query: 28 ERGLSKLTLQSYECDT-RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 E L KL L+ Y T R ++ F + + + ++ ++IRAF+ K + + + Sbjct: 96 EEYLLKLELKRYANSTVRTYVSFFELFINH-YKYKELNAINESDIRAFLQKLIHRNVSNS 154 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 L +S++ IK + + + + + + +K + LP+ +++ + LT+++N Sbjct: 155 YLNQSINAIKFYYEVV----LGMPNRFYEIERPRKESKLPKVISKDEILTIIENT----- 205 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS 205 + ++ I+ LLYG GLR SE L+L ++ + + + KG+K R L Sbjct: 206 -----NNIKHRCIVQLLYGSGLRRSELLNLKINDVDSKRMLIHVSDSKGNKDRQTLL--- 257 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 K L +DL + Q+ LF G GK + ++ + + T H L Sbjct: 258 -SKTCL--HDLRLYFTKYRPQVYLFEGRYGKKYSGESVLSIVKSAAERARIRVRVTPHVL 314 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 RHSFATHLL +G DLR IQ +LGH TT+IYT+V Sbjct: 315 RHSFATHLLESGTDLRHIQVLLGHGSTKTTEIYTHV 350 >gi|240080225|ref|ZP_04724768.1| XerD [Neisseria gonorrhoeae FA19] gi|240112438|ref|ZP_04726928.1| XerD [Neisseria gonorrhoeae MS11] gi|240115178|ref|ZP_04729240.1| XerD [Neisseria gonorrhoeae PID18] gi|254493240|ref|ZP_05106411.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 1291] gi|260441004|ref|ZP_05794820.1| XerD [Neisseria gonorrhoeae DGI2] gi|268596375|ref|ZP_06130542.1| tyrosine recombinase xerD [Neisseria gonorrhoeae FA19] gi|268598504|ref|ZP_06132671.1| tyrosine recombinase xerD [Neisseria gonorrhoeae MS11] gi|268600856|ref|ZP_06135023.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID18] gi|291044335|ref|ZP_06570044.1| tyrosine recombinase xerD [Neisseria gonorrhoeae DGI2] gi|226512280|gb|EEH61625.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 1291] gi|268550163|gb|EEZ45182.1| tyrosine recombinase xerD [Neisseria gonorrhoeae FA19] gi|268582635|gb|EEZ47311.1| tyrosine recombinase xerD [Neisseria gonorrhoeae MS11] gi|268584987|gb|EEZ49663.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID18] gi|291011229|gb|EFE03225.1| tyrosine recombinase xerD [Neisseria gonorrhoeae DGI2] Length = 291 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 80/281 (28%), Positives = 137/281 (48%), Gaps = 16/281 (5%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L+ L ++R LS+ TL SY D + L+ +T++ ++ A + Q Sbjct: 10 LETLWLDRRLSRNTLDSYRRDLEKIARRLSLCG------RTLKDADEADLAAAVYVDGEQ 63 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 + S R+LS K ++++ + ++ ++ K ++P + E+Q L+ Sbjct: 64 R---GSQARALSACKRLYVWMEREGMRADNPTRLLKPPKIDRNIPTLITEQQISRLLAAP 120 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 T H R+ A+L L+Y GLR+SEA+ L N+ D+ + GKGDK R+VP Sbjct: 121 DTDTPH-----GLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITTLGKGDKQRMVP 175 Query: 202 LLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 + + YY + P L LF + ++ + +++ G+ Sbjct: 176 MGQESAYWVERYYTEARPLLLKGRSCDALFVSQKKTGISRQLAWMIVKEYAGRAGIG-HI 234 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + H+LRH+FATHL+ +G DLR +Q +LGH L+TTQIYT+V Sbjct: 235 SPHSLRHAFATHLVRHGLDLRVVQDMLGHADLNTTQIYTHV 275 >gi|253991592|ref|YP_003042948.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638470|emb|CAR67092.1| tyrosine recombinase xerc [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253783042|emb|CAQ86207.1| tyrosine recombinase xerc [Photorhabdus asymbiotica] Length = 303 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 88/312 (28%), Positives = 155/312 (49%), Gaps = 29/312 (9%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ---LSYTE 70 LL+ + +L+ L +ER LS +T+ +Y R+ L LA E + +RQ L + Sbjct: 8 LLEPIEAFLRYLRVERRLSPVTIINY----RRHLSALA----EMVLAIDVRQWEDLDPAK 59 Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 +R + + R + +L LS ++SFL + + + + + LP+ ++ Sbjct: 60 VRMLVIRSRRAGLQSANLSLRLSSLRSFLDWQVTQGVMAVNPGKAVSTPGTKRHLPKNID 119 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 + N LL+ + + R+ +L ++YG GLR+SE + L +++ + + + Sbjct: 120 VDEV-----NQLLNINFNEP-LSVRDRTMLEVMYGAGLRLSELVGLDCRHLDLESGEVWV 173 Query: 191 QGKGDKIRIVPLLPSVRKAI---LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 GKG K R VPL + + + LE +L N +F RG+ ++ Q+ Sbjct: 174 SGKGSKERKVPLGQTAVEWLNRWLEMRELFKPGDN-----AVFISNRGRRISTRNVQQRF 228 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 Q G+ H LRHSFATH+L + GDLR++Q +LGH LSTTQ+YT+++ ++ Sbjct: 229 AQWGIRQGINSHIHPHKLRHSFATHILESSGDLRAVQELLGHASLSTTQVYTHLDFQH-- 286 Query: 308 DWMMEIYDQTHP 319 + ++YD HP Sbjct: 287 --LTKVYDVAHP 296 >gi|257076713|ref|ZP_05571074.1| integrase/recombinase [Ferroplasma acidarmanus fer1] Length = 280 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 118/232 (50%), Gaps = 30/232 (12%) Query: 94 GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153 +K+ Y K + T N++ R +S +P LN+K A L++ K I Sbjct: 71 AMKALRLYYKFKNKNTPPNLIPPR---RSQKMPVYLNQKDAGVLING--------AKSI- 118 Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILE 212 R+ A++ + G+R+SE +L ++ D++ + I GKGDK RIV + R+ I Sbjct: 119 -RDIAVISVFLYTGIRVSELTNLQIGDVDFDENIIYIHAGKGDKDRIVVMPDICREHIKS 177 Query: 213 YYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 Y + I++ LF + + +R ++++ + G+ + T H LRH Sbjct: 178 Y-------MKERIRIKSSNNYLFISNKKTKFDTSTVERMVKRVAKNAGITKNVTPHVLRH 230 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 +FAT +L NGGD+R IQ ILGH L+TTQIYT+++ + + E+Y + P Sbjct: 231 TFATSILRNGGDIRFIQQILGHSSLATTQIYTHIDD----NTLKEMYSRHMP 278 >gi|134299970|ref|YP_001113466.1| phage integrase family protein [Desulfotomaculum reducens MI-1] gi|134052670|gb|ABO50641.1| phage integrase family protein [Desulfotomaculum reducens MI-1] Length = 301 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 71/275 (25%), Positives = 135/275 (49%), Gaps = 16/275 (5%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 R LS TL+ Y+ T +F+ + + I I +++ + ++ K + S+ Sbjct: 17 RNLSPRTLEWYKYITAKFI---NYCNDNDIQIDSLKTPEARQWVNWLQKGSETQYKGNSI 73 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 + IK+ Y + + ++ + +K N++ + ++ + ++ Sbjct: 74 NCHIRAIKTMFNYFMEDEYIDKNPFHKVSKIKVDNTIIHTFEPDEIKKMLAQL-----NK 128 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 + D R++ +L ++Y CGLR+SE ++L +I D++ ++ GKG K R+VP SV++ Sbjct: 129 NTFYDLRDNLMLRIMYDCGLRVSEIINLKITDIDTDKNMFKVFGKGHKERMVPFGRSVKR 188 Query: 209 AILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAH 263 +++Y P DL+ + L +G PL+ R IR + + G+ + H Sbjct: 189 ELVKYLPKRNKAVPHDLD---EGYLLCTNQGTPLHKRNILRKIRIVGQGAGIEGKRLSPH 245 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 T RHSFA L GGDL S+Q+I+GH L++T+ Y Sbjct: 246 TYRHSFAKQYLMAGGDLFSLQTIMGHSSLNSTRRY 280 >gi|308069238|ref|YP_003870843.1| Site-specific recombinase XerC [Paenibacillus polymyxa E681] gi|305858517|gb|ADM70305.1| Site-specific recombinase XerC [Paenibacillus polymyxa E681] Length = 318 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 80/288 (27%), Positives = 140/288 (48%), Gaps = 33/288 (11%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 G + T ++Y D +QFL L EK + Q+ + +++SK R GD + Sbjct: 35 GYTIHTQKNYMGDVKQFLRTL----REK----PLDQVKKIHVMSYLSKAREGGAGDSTRN 86 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLK-KSNSLPRALNEKQALTLVDNVLLHTSHE 148 R + + SF K L++ ++ + + ++ K + N +P L+EK + V E Sbjct: 87 RKHAAVNSFFKALQEFELCSTNPAAGIKKAKTEKNRMPVYLDEKDIHPFLLAV------E 140 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 K+ + RN AI L+ GLR+ E SL + ++ TL + GKG K R +P V + Sbjct: 141 GKYAN-RNMAIFLLMVYMGLRVGEVHSLNVSDYSRERRTLDVFGKGRKWRTLP----VPE 195 Query: 209 AILEYYD------LCPFDLNLNIQLPLFRGIR-----GKPLNPGVFQRYIRQLRRYLGLP 257 A+ ++ + L P+ + +G R + + F+R+ Q + + Sbjct: 196 AVCDFVEHALEERLTPWRGKEDAMFVSQKGRRLAVRTIQQIATETFERF--QQDKSIERR 253 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + ++H LRH+FAT LL G DLR++Q +LGH + TT +YT+V ++ Sbjct: 254 EAYSSHKLRHTFATMLLRKGADLRTVQELLGHSSIQTTTVYTHVTNRE 301 >gi|317051479|ref|YP_004112595.1| integrase family protein [Desulfurispirillum indicum S5] gi|316946563|gb|ADU66039.1| integrase family protein [Desulfurispirillum indicum S5] Length = 303 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 79/295 (26%), Positives = 147/295 (49%), Gaps = 24/295 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +N+ + +E+G S T+ Y Q L LA + E+ I +++++ E+RA++ +R Sbjct: 9 KNFCSYMRMEKGCSPGTISKYS----QELGRLAEHLYEQ-GIHDWQEVTHLELRAYLYQR 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS--NSLPRALNEKQALT 136 + + L+ +KSF ++ + +IT + + ++S + LP+ +N + Sbjct: 64 -AGNLSKHTFSTVLATLKSFFRFTVREEITHANPTTKLSFPRRSPQDKLPQYVNSEAQSE 122 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 + +L S + + + RN +I++ G+R SE SL N+ T I KG K Sbjct: 123 FLQQLL---SLKRNFTNDRNRSIIFTFLMTGMRTSELCSLKRSNVSAGTQTFIITRKGGK 179 Query: 197 IRIVPLLPSVRKAILEY----YDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLR 251 +++P+ + K + Y YD P + F +G+P+ P ++ RQL+ Sbjct: 180 QQVLPMATELVKILDTYWTPWYDAIPSEY-------YFCTKQGQPMTPRTIWHLVSRQLQ 232 Query: 252 RYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 R L + AH LRH+FAT+L+ +L IQ++LGH + TQIYT+V+ ++ Sbjct: 233 RVDTLSCTKQGAHVLRHTFATNLVRRKANLIEIQNLLGHADVRMTQIYTHVSPES 287 >gi|7263003|gb|AAF44051.1|AF206717_5 ResU [Shuttle vector pI3] Length = 321 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 89/308 (28%), Positives = 143/308 (46%), Gaps = 44/308 (14%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFISKRR 79 W L E+G S T++ Y D R +L A + + + +LS ++RAF++ Sbjct: 10 WAHYLAKEQGRSPATVREYLKDVRLLRSWLDAEDKPQHLRGRDWGELSAADLRAFLA--- 66 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNI-LNMRNLKKSNSLPRALNEKQALTL 137 R R ++ +SF ++L + +K+ +I ++ K P L + L Sbjct: 67 AADPSPRRFHRLVNSWRSFWRFLVRVQKLPGVQDITADLTTPKIPKRAPVKLTLEDVSKL 126 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQS--TLRIQGKG 194 ++ V S + +N I+ LYG GLRISE L++ +I D S +R+ GKG Sbjct: 127 LEVVYRDKSPQR---GLKNWCIVAFLYGTGLRISEMLAMKFADIEYQDGSPVAVRVIGKG 183 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF-----QRYIRQ 249 DK R VPL P+ + A++ + R G P+ P V+ +RY +Q Sbjct: 184 DKERRVPLSPTAQGALMRWLR--------------ERKTHGNPVTPWVWSPLSGKRYGQQ 229 Query: 250 LR-RYLGLPLSTTA------------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 ++ R +G L T A H LRH+FAT LL+NG L I+ +LGH + TT Sbjct: 230 MQARTIGKMLDTAAERAGLDPATVSPHKLRHTFATTLLNNGRTLDEIKELLGHENIQTTM 289 Query: 297 IYTNVNSK 304 IY +++ Sbjct: 290 IYAQTDTR 297 >gi|156974288|ref|YP_001445195.1| integrase [Vibrio harveyi ATCC BAA-1116] gi|156525882|gb|ABU70968.1| hypothetical protein VIBHAR_02003 [Vibrio harveyi ATCC BAA-1116] Length = 318 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 92/320 (28%), Positives = 134/320 (41%), Gaps = 65/320 (20%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-RQLSYTEIRAFISKRRTQKIGD 85 I R +K T+++Y +++++F K+ + R LS+ I +K+ Sbjct: 14 ISRHYAKKTIETYLFWIKRYIVFHQLTHPSKLCEDDVERFLSHLAI--------DEKVAV 65 Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNVLL 143 ++ +L+ I SFL R+ LNMR K LP L + V + Sbjct: 66 KTQALALNAI-SFLY----REYFQMPLSLNMRFQKSLTEKKLPVVLTRDEVRRFVQH--- 117 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL 202 ID + + LLYG GLRI E L L Q+I D LR+ QGKG K R V L Sbjct: 118 --------IDPKYKLHIQLLYGSGLRIMECLRLRIQDIDYDYGALRVWQGKGGKNRTVTL 169 Query: 203 LPSVRKAI-------LEYYDL----------------------CPFDLNLNIQLPLFR-- 231 + + + +YY D N + P + Sbjct: 170 AKELHEPLKAQVNLTRDYYQKDRHMGGYAGVYISDGLRRKYPGAELDFNWHFLFPSTKLS 229 Query: 232 ------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285 R +N QR +++ + G+ S T HTLRHSFATHLL G D+R++Q Sbjct: 230 IDADTGEFRRHHVNESAIQRAVKRAAKDAGIEKSVTCHTLRHSFATHLLETGADIRTVQE 289 Query: 286 ILGHFRLSTTQIYTNVNSKN 305 LGH + TTQIYT V+ N Sbjct: 290 QLGHTDVKTTQIYTAVHHVN 309 >gi|254452498|ref|ZP_05065935.1| phage integrase [Octadecabacter antarcticus 238] gi|198266904|gb|EDY91174.1| phage integrase [Octadecabacter antarcticus 238] Length = 319 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 57/149 (38%), Positives = 84/149 (56%), Gaps = 4/149 (2%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC 217 +L L YGCGLR E + L +I DQ +RI Q KG K R V L + + +++ Sbjct: 146 MLSLAYGCGLRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRNVMLPVDILSLLRDWWKER 205 Query: 218 PFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 P + ++ + LF G GK L+ R ++ + G+ T HTLRHSFATHLL Sbjct: 206 PTSQDRDVPVSERVLFPGYCGKYLSARQISRLFKETAQEAGITKPVTLHTLRHSFATHLL 265 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 +G D+R IQ++LGH +L+TT +Y +V + Sbjct: 266 ESGVDIRVIQALLGHAKLTTTALYASVAT 294 >gi|300872293|gb|ADK38974.1| IntI4 [Vibrio sp. V92(2010)] Length = 296 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 91/188 (48%), Gaps = 38/188 (20%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206 +D ++ + LLYG GLR+ E + L Q+I D +RI QGKG K R V L P + Sbjct: 101 VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 160 Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233 ++ I YYD P++ + P F+ + Sbjct: 161 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 220 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R +N V Q+ +R+ + G+ + T HTLRHSFATHLL G D+R++ LGH + Sbjct: 221 RRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVHEQLGHTDVK 280 Query: 294 TTQIYTNV 301 TTQIYT+V Sbjct: 281 TTQIYTHV 288 >gi|218442340|ref|YP_002380665.1| hypothetical protein PCC7424_5613 [Cyanothece sp. PCC 7424] gi|218175444|gb|ACK74172.1| hypothetical protein PCC7424_5613 [Cyanothece sp. PCC 7424] Length = 273 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 77/288 (26%), Positives = 136/288 (47%), Gaps = 38/288 (13%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 G SK T+ SY+C +QFL F+ + +R ++ ++ +++ R ++ Sbjct: 20 GKSKTTVISYQCHVKQFLEFVG---------KPLRDVTLDDLSLWVN-RLNLTYQPVTVA 69 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 + +KS + + T +N+ + KS L L E+ +L S Sbjct: 70 NKILTVKSLFSFACRVGYLT----VNVGSFIKSPKLKDTLAER---------ILDPSEVK 116 Query: 150 KWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 + I+A R+S +L L+YGCGLR+SE L ++ + ++T + GKG K RIV + P+ Sbjct: 117 RLINAAPNERDSVLLSLMYGCGLRVSEVCGLNWSDLKNGKAT--VFGKGAKTRIVIIPPN 174 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + +++ P D +F RG L + I++ G+ ++H L Sbjct: 175 LWDRLMKL----PRDGE-----AVFMSRRGNRLERTYIHKMIKECCHLSGVSEKASSHWL 225 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 RHS A+H + G +LR +Q LGH +L TT+ Y ++N G ++I Sbjct: 226 RHSHASHAVEAGCNLRLLQQSLGHSKLETTEKYLHINPDEGSSQFIDI 273 >gi|288927178|ref|ZP_06421058.1| phage-related integrase [Prevotella buccae D17] gi|315608604|ref|ZP_07883587.1| possible tyrosine recombinase [Prevotella buccae ATCC 33574] gi|288336047|gb|EFC74448.1| phage-related integrase [Prevotella buccae D17] gi|315249707|gb|EFU29713.1| possible tyrosine recombinase [Prevotella buccae ATCC 33574] Length = 342 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 88/320 (27%), Positives = 152/320 (47%), Gaps = 30/320 (9%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTE---EKITIQTIRQLSYTEIRAFISKRRTQ 81 L ERG+S TL+SY +L F+ E EK+T++ + + + + ++ ++ Sbjct: 18 LSAERGVSSNTLRSYGTAFASYLDFMRVKREVDAEKLTLEHMGRKNVLDYLDWLQTDKSS 77 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 + R+ + L+ I +F +Y++ +T + +K ++ +N + V + Sbjct: 78 SVSTRN--QRLAAIHAFCRYMQYEDVTRLYQWQEILGVKMKKAIKGTMN-YLTMDAVKEL 134 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIV 200 L H +T R+ A+L LLY G R+ E + L P ++ + + + GKG+K R+V Sbjct: 135 LAHIP-QTTMRGRRDLAMLSLLYETGARVQELIDLRPVDVCLSKPYYVTLFGKGNKKRLV 193 Query: 201 PLLP---SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL- 256 P+ S+ + +E L +N Q PLF+ RG L G YI L+ Y + Sbjct: 194 PIQDAQVSILRKYMEENHLLELRMN---QRPLFQNGRGGKLT-GAGITYI--LKNYATMA 247 Query: 257 --------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 P + H LRHS A HLL G +L I+ ILGH + TT++Y +SK Sbjct: 248 RTASENLIPEKISPHCLRHSKAMHLLQAGVNLVYIRDILGHVSIQTTEVYARADSKQK-- 305 Query: 309 WMMEIYDQTHPSITQKDKKN 328 E ++T+ SI +++ N Sbjct: 306 --REALEKTYTSILPQEEDN 323 >gi|229527749|ref|ZP_04417140.1| integron integrase IntI4 [Vibrio cholerae 12129(1)] gi|229334111|gb|EEN99596.1| integron integrase IntI4 [Vibrio cholerae 12129(1)] Length = 320 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 91/188 (48%), Gaps = 38/188 (20%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206 +D ++ + LLYG GLR+ E + L Q+I D +RI QGKG K R V L P + Sbjct: 118 VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 177 Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233 ++ I YYD P++ + P F+ + Sbjct: 178 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 237 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R +N V Q+ +R+ + G+ + T HTLRHSFATHLL G D+R++Q LGH + Sbjct: 238 RRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLDVGADIRTVQEQLGHTDVK 297 Query: 294 TTQIYTNV 301 TTQIYT+ Sbjct: 298 TTQIYTHA 305 >gi|299538025|ref|ZP_07051311.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1] gi|298726607|gb|EFI67196.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1] Length = 276 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 80/276 (28%), Positives = 127/276 (46%), Gaps = 38/276 (13%) Query: 31 LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90 LS T++ Y QF F ++ ++ T+IRA+++ + + RS+ Sbjct: 17 LSPETIRGYRIALTQFFTF---------CVKGFGEVKATDIRAWLASLEEKGLKPRSIHA 67 Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150 L+ +KSF Y + ++ L +R K +SLP L+ ++ + L+ + H Sbjct: 68 KLAALKSFYNYCMEENQVKKNPTLTVRAPKIDDSLPYYLSRRE-VALLQELTRH------ 120 Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKA 209 D RN AI+ LY G+RISE L + +++ D + I +GKG+K R V Sbjct: 121 --DPRNRAIVETLYTTGVRISELLQIKLEDVKWDTRQIWIRKGKGNKERFV--------- 169 Query: 210 ILEYYDLCPFDLNLNI------QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 L YD C LN + LF GKPL+ ++ + LG + H Sbjct: 170 -LFSYD-CLERLNTYLAHRKRESAYLFSNYWGKPLSHVFVEQQFQAFSEELGFRVR--PH 225 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 TLRH+FA HL IQ +LGH +++T+IYT Sbjct: 226 TLRHTFAAHLAEKNMPQSYIQELLGHVNINSTRIYT 261 >gi|317132367|ref|YP_004091681.1| integrase family protein [Ethanoligenens harbinense YUAN-3] gi|315470346|gb|ADU26950.1| integrase family protein [Ethanoligenens harbinense YUAN-3] Length = 334 Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 86/314 (27%), Positives = 158/314 (50%), Gaps = 31/314 (9%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL----------AFYTE---EKITIQT 62 K +++L +E +G S T++ YE D R F F+ + E + + I Sbjct: 10 KAVRDFLVYMETIKGKSPGTVREYENDLRTFFRFIKQMRGSVPRDTPFDEIAIDDVDIPF 69 Query: 63 IRQLSYTEIRAF---ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK-ITTESNILNMRN 118 + ++ +I + I+ R + R+ R +S ++SF KYL +R I E+ ++ Sbjct: 70 LASITLADIYEYLNYITNERKNRAASRA--RKVSSLRSFYKYLCERAGILQENPTRDLEA 127 Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178 K+ SLP+ L ++++ ++ ++ + K+ AR+ I+ L CG+R+SE + L Sbjct: 128 PKQKKSLPKYLTLEESMEVLRDI------DGKFA-ARDYCIMTLFLNCGMRLSELVGLNL 180 Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238 +I + ST+ + GKG+K R + L + +A+ Y + D ++ + LF R + + Sbjct: 181 SDIRN--STMTVTGKGNKQRTIYLNEACLQALERYLAVRAKD-SVKDRDALFLSNRLQRI 237 Query: 239 NPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQ 296 +P Q + + GL + H LRH+ AT L +G D+R +Q ILGH LSTT+ Sbjct: 238 SPKTVQAIVYKYLERAGLSGRGLSVHKLRHTAATLLYQHGHVDVRVLQEILGHENLSTTE 297 Query: 297 IYTNVNSKNGGDWM 310 IYT+++ + D + Sbjct: 298 IYTHLSDRQLQDAV 311 >gi|42520949|ref|NP_966864.1| phage integrase family site specific recombinase [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410690|gb|AAS14798.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Drosophila melanogaster] Length = 328 Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 101/334 (30%), Positives = 163/334 (48%), Gaps = 39/334 (11%) Query: 16 KERQNWLQNLEI---------ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66 K+ QN +NL I ER ++ TL+SY D QF FL E T+ + + Sbjct: 4 KQSQNKKENLYITYYIDALASERSAAQNTLESYRSDLHQFEEFL---LESGTTLVGVNK- 59 Query: 67 SYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKIT----TESNILNMRNLKK 121 T I+ ++ TQK S+ R +S +K+F K L I +N ++N K Sbjct: 60 --TNIKDYVKSLCTQKKYKSSSISRKISAMKNFYKCLFNNGIIDFNPAPANDAELKNPKV 117 Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQN 180 S LP+ L+ ++ L+D V S K I + R AIL +LY G+R+SE +S+ Sbjct: 118 SRPLPKYLSVEEIFLLIDTVRKSASESNKEISSKRLCAILDILYSSGMRVSELISMKLCE 177 Query: 181 IM------DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGI 233 + + + + I+GK + R + +++ Y + ++ + LF G Sbjct: 178 VSHLINSNNKECYIIIKGKSGRERQILFNEQALQSLRNYLSVRDNLISKEKESDWLFPG- 236 Query: 234 RGKPLNPGVFQRY---IRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGH 289 KP P QR +++L R + + + H +RHSFATHLL++G ++ IQ +LGH Sbjct: 237 -DKPNKPITRQRVGQLMKELARKCNIDENKISPHVVRHSFATHLLNSGANIVLIQKVLGH 295 Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323 LSTTQIYT++ ++ D + + +HP ITQ Sbjct: 296 TNLSTTQIYTHIANEKLKDKLAD----SHP-ITQ 324 >gi|310642278|ref|YP_003947036.1| integrase family protein [Paenibacillus polymyxa SC2] gi|309247228|gb|ADO56795.1| Integrase family protein [Paenibacillus polymyxa SC2] Length = 318 Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 80/303 (26%), Positives = 142/303 (46%), Gaps = 49/303 (16%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W+++ G + T ++Y D +QFL + + + Q+ + +++SK R Sbjct: 30 WMKDA----GYTIHTQKNYTGDVKQFL--------RTLRDKPLDQVKKIHVMSYLSKARE 77 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK-KSNSLPRALNEKQALTLVD 139 GD + R + + SF + L++ ++ + + ++ K + N +P L+EK + Sbjct: 78 GGAGDSTRNRKHAAVNSFFRALQEFELCSTNPAAGIKKAKTEKNRMPVYLDEKDIQPFLL 137 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 V E K+ + RN AI L+ GLR+ E SL + ++ TL + GKG K R Sbjct: 138 AV------EGKYAN-RNMAIFLLMVYMGLRVGEIHSLNVSDYSRERRTLDVFGKGRKWRT 190 Query: 200 VPLLPSVRKAILEYYDLCPF-DLNLNIQLPLFRG---------------IRG-KPLNPGV 242 +P+ +V C F + L +L +RG +R + + Sbjct: 191 LPVPAAV----------CDFVEHALEERLTPWRGKEDAMFISQKGRRLAVRSIQQIATET 240 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 F+R+ Q + L + ++H LRH+FAT LL G DLR++Q +LGH + TT +YT+V Sbjct: 241 FERF--QQDKGLERREAYSSHKLRHTFATMLLRKGADLRTVQELLGHSSIQTTTVYTHVT 298 Query: 303 SKN 305 + Sbjct: 299 DRE 301 >gi|304387940|ref|ZP_07370113.1| tyrosine recombinase XerD [Neisseria meningitidis ATCC 13091] gi|304338037|gb|EFM04174.1| tyrosine recombinase XerD [Neisseria meningitidis ATCC 13091] Length = 291 Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 68/233 (29%), Positives = 116/233 (49%), Gaps = 11/233 (4%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R+LS K ++++ I T++ ++ K ++P + E+Q L+ T Sbjct: 66 SQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLATPDTDTP 125 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 H R+ A+L L+Y GLR+SEA+ L ++ + + GKGDK R+VP+ Sbjct: 126 H-----GLRDKALLELMYATGLRVSEAVGLNFGSVDLGRGCITALGKGDKQRMVPMGQES 180 Query: 207 RKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + YY + P L LF + ++ + +++ G+ + H+L Sbjct: 181 AYWVERYYTEARPLLLKGRSCDALFVSQKKTGISRQLAWMIVKEYAGRAGIG-HISPHSL 239 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 RH+FATHL+ +G DLR +Q +LGH L+TTQIYT+V + W+ + + H Sbjct: 240 RHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANV----WLQGVVKEHH 288 >gi|189460431|ref|ZP_03009216.1| hypothetical protein BACCOP_01072 [Bacteroides coprocola DSM 17136] gi|189462397|ref|ZP_03011182.1| hypothetical protein BACCOP_03083 [Bacteroides coprocola DSM 17136] gi|189430903|gb|EDU99887.1| hypothetical protein BACCOP_03083 [Bacteroides coprocola DSM 17136] gi|189432863|gb|EDV01848.1| hypothetical protein BACCOP_01072 [Bacteroides coprocola DSM 17136] Length = 368 Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 54/150 (36%), Positives = 83/150 (55%), Gaps = 7/150 (4%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 ++ ++ L+Y GLR SE L+LTPQ+I+ ++ +RI GKG K R L + + YY Sbjct: 209 KHRCMISLIYSAGLRRSELLNLTPQDIISERMLIRIAGKGKKCRYSLLSEKLLNELRAYY 268 Query: 215 DLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 Q LF G + G+ +P + +++ R G+ H LRH+FATHL Sbjct: 269 R------EYRPQKWLFEGEQAGEQYSPSALVKILKEAARKAGIKHRVHLHMLRHTFATHL 322 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 L G DLR+IQ ++GH + TT IY +V++ Sbjct: 323 LEQGTDLRTIQELMGHTDIKTTAIYLHVSN 352 >gi|300723777|ref|YP_003713084.1| Tyrosine recombinase xerC 2 [Xenorhabdus nematophila ATCC 19061] gi|297630301|emb|CBJ90955.1| Tyrosine recombinase xerC 2 [Xenorhabdus nematophila ATCC 19061] Length = 342 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 90/314 (28%), Positives = 149/314 (47%), Gaps = 44/314 (14%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 ++RG SK T ++Y R F+ + E ++ Q+S + ++ R+ + D Sbjct: 19 VDRGYSKRTQEAYRERLRPFVDWC-----ELRDVRHAPQVSLALLESWQRYLRSYRKADG 73 Query: 87 SLKRS------LSGIKSFLKYLKKRK--ITTESNILNMRNLKKSNSLP-RALNEKQALTL 137 S LS ++ + ++L KR + + +L M K+ LP + L+E + T+ Sbjct: 74 QYYTSGGLINRLSALRGWFRWLLKRHHILYNPAELLTM--PKEEKRLPAQVLSETETETV 131 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196 + ++ + T + RN A+L + + G+R +E ++L +I + + + QGKG K Sbjct: 132 LMSIDIQTP-----LGLRNRALLEVFWSTGIRRNELINLKLSDIDSGRGVIMVRQGKGRK 186 Query: 197 IRIVPLLPSVRKAILEY-YDLCP-----FDLNLNIQLPLFRGIRGKPLNPGVFQ----RY 246 R+VP+ + Y D+ P +D LF ++G+PL R Sbjct: 187 DRVVPIGERALAWVNRYLADVRPRLAWKYDSGY-----LFITLKGQPLARSTVTLMAGRT 241 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 IRQ R L T H RHS AT +L NG D R IQ+ILGH +L TTQIYT V + Sbjct: 242 IRQQAR---LNKPGTCHVFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGH- 297 Query: 307 GDWMMEIYDQTHPS 320 + ++ QTHP+ Sbjct: 298 ---LKAVHHQTHPA 308 >gi|322806105|emb|CBZ03672.1| tyrosine recombinase XerD [Clostridium botulinum H04402 065] Length = 205 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 92/165 (55%), Gaps = 4/165 (2%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ A+L L+Y G++I+E L+L +I + ++ +G + RI+P+ K + Y Sbjct: 43 RDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRERIIPIGSYAIKCLKNYL 102 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 ++ P N+ LF ++G + F + I+ + + ++TLRHSFA HLL Sbjct: 103 EVRPAINVYNLDY-LFLNLKGTQMTRQGFWKIIKFYAKEASIDKEIDSYTLRHSFAVHLL 161 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 NG D++S+Q +LGH L+ TQIY++++ K+ + E+Y HP Sbjct: 162 QNGADIKSVQELLGHKDLAATQIYSSISKKSK---IAEVYKNAHP 203 >gi|300872283|gb|ADK38969.1| IntI4 [Vibrio sp. V84(2010)] Length = 290 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 92/188 (48%), Gaps = 38/188 (20%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206 +D ++ + LLYG GLR+ E + L Q+I D +RI QGKG K R V L P + Sbjct: 95 VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 154 Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233 ++ I YYD P++ + P F+ + Sbjct: 155 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 214 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R +N V Q+ +R+ + G+ + T HTLRHSFATHLL G D+R+++ LGH + Sbjct: 215 RRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVREQLGHTDVK 274 Query: 294 TTQIYTNV 301 TTQIYT+V Sbjct: 275 TTQIYTHV 282 >gi|227539350|ref|ZP_03969399.1| possible tyrosine recombinase [Sphingobacterium spiritivorum ATCC 33300] gi|227240806|gb|EEI90821.1| possible tyrosine recombinase [Sphingobacterium spiritivorum ATCC 33300] Length = 301 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 77/274 (28%), Positives = 137/274 (50%), Gaps = 27/274 (9%) Query: 33 KLTLQSYECDT-RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRSLKR 90 +L +Q Y +T R + + + + + ++ ++ ++I AFI+++ + KI K Sbjct: 35 RLLMQRYAGNTIRSYKDYASIFLKHVSKYPSLEEIPLSDIEAFINEKVQNGKISVSYQKG 94 Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQALTLVDNVLLHTSHET 149 + IK + + +KI L+ K+S S LP+ ++++ ++DN Sbjct: 95 LVGAIKKMYELILDKKIQ-----LDYLYPKRSFSKLPKFFSKEEVRNILDNTQ------- 142 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRK 208 + ++ AIL +Y CGLR+SE L+L ++I +RI Q KG+K RIV L + Sbjct: 143 ---NLKHKAILMTIYSCGLRLSELLNLKIKDIKSSDGIIRIHQSKGNKDRIVSLPDKLLA 199 Query: 209 AILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 + YY P + LF G RG + Q +++ + + HTLRH Sbjct: 200 TLRHYYQAFKPKEY-------LFEGERGGKYSERSVQLILKKALIKANVQSEGSVHTLRH 252 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 S+ATHL+ +G D+R ++ +LGH + TT IYT++ Sbjct: 253 SYATHLIQSGIDIRIVKELLGHENIKTTMIYTHI 286 >gi|114797932|ref|YP_758814.1| tyrosine recombinase XerD [Hyphomonas neptunium ATCC 15444] gi|114738106|gb|ABI76231.1| tyrosine recombinase XerD [Hyphomonas neptunium ATCC 15444] Length = 309 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 86/320 (26%), Positives = 143/320 (44%), Gaps = 44/320 (13%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ + ERG S TL +Y R L F +T S +++ A+++ Sbjct: 10 FLEMMSAERGASPNTLDAY---GRDLLDASEFCHLRLVTA------SSSDLSAWLADLAA 60 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + + R LS ++ F ++L + + + +P L+ ++ L+ Sbjct: 61 RGMAPSTQARKLSAVRRFFRFLFQEGDRKDDPTARLDGPSPEREVPDVLSREEVGRLI-- 118 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS------TLRIQGKG 194 E D R ++ LLYG GLR +E ++L N+ ++ + I+GKG Sbjct: 119 -------EACGNDKRLKCLVELLYGAGLRATELVTLRVGNLPRRKAGQWMSADIIIRGKG 171 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 K R+ PL + A+ E+ ++ L N PL R + + P + RR L Sbjct: 172 GKDRLCPLGRAALIALSEWLEVREASLPDN---PLMRSKQEGFVFPSRGKEG-HLTRRRL 227 Query: 255 GLPLSTTA------------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 G L A H LRH++ATHLL G DLR +Q++LGH ++TTQIYT+V Sbjct: 228 GQMLEDLAGEAGLRSERVYPHALRHAYATHLLQGGADLRVVQTLLGHADIATTQIYTHVL 287 Query: 303 SKNGGDWMMEIYDQTHPSIT 322 + D + E+ + HP T Sbjct: 288 T----DELAELLETAHPMAT 303 >gi|37680125|ref|NP_934734.1| super-integron integrase IntIA [Vibrio vulnificus YJ016] gi|37198871|dbj|BAC94705.1| super-integron integrase IntIA [Vibrio vulnificus YJ016] Length = 320 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 66/194 (34%), Positives = 87/194 (44%), Gaps = 38/194 (19%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV-------PLL 203 ID R + LLYG GLR+ E + L Q+I LR+ QGKG K R V PLL Sbjct: 118 IDPRYKLHIMLLYGSGLRVMECVRLRIQDIDYHYGALRVWQGKGGKNRTVTLAKELYPLL 177 Query: 204 PSVRKAILEYYDL----------------------CPFDLNLNIQLPLFRG--------I 233 L YY D N + P R + Sbjct: 178 KEQEALALRYYQKDRITAGYAGVWLSSSLQRKYQGAEMDFNWHYLFPSDRLSRDPESDLL 237 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R +N QR +++ + G+ S + HTLRHSFATHLL +G D+R++Q LGH + Sbjct: 238 RRHHINEQALQRAVKRAAKDAGITKSISCHTLRHSFATHLLESGADIRTVQEQLGHSDVK 297 Query: 294 TTQIYTNVNSKNGG 307 TTQIYT+V + G Sbjct: 298 TTQIYTHVLERGAG 311 >gi|261212788|ref|ZP_05927072.1| integron integrase IntI4 [Vibrio sp. RC341] gi|260837853|gb|EEX64530.1| integron integrase IntI4 [Vibrio sp. RC341] Length = 320 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 91/188 (48%), Gaps = 38/188 (20%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206 +D + + LLYG GLR+ E + L Q++ D +RI QGKG K R V L P + Sbjct: 118 VDPKYQLPIKLLYGSGLRLMECIRLRVQDVDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 177 Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233 ++ I YYD P++ + P F+ + Sbjct: 178 KEQIALVKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 237 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R +N V Q+ +R+ + G+ + T HTLRHSFATHLL G D+R++Q LGH + Sbjct: 238 RRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVK 297 Query: 294 TTQIYTNV 301 TTQIYT+V Sbjct: 298 TTQIYTHV 305 >gi|258623268|ref|ZP_05718275.1| site-specific recombinase IntI [Vibrio mimicus VM573] gi|258584454|gb|EEW09196.1| site-specific recombinase IntI [Vibrio mimicus VM573] Length = 320 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 65/188 (34%), Positives = 90/188 (47%), Gaps = 38/188 (20%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206 +D + LLYG GLR+ E + L Q+I D +RI QGKG K R V L P + Sbjct: 118 VDPKYQLPAKLLYGSGLRLMECIRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 177 Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233 ++ I YYD P++ + P F+ + Sbjct: 178 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 237 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R +N V QR +R+ + G+ + T HTLRHSFATHLL G D+R++Q LGH + Sbjct: 238 RRHHMNETVLQRTVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVK 297 Query: 294 TTQIYTNV 301 TTQIYT+V Sbjct: 298 TTQIYTHV 305 >gi|296129328|ref|YP_003636578.1| integrase family protein [Cellulomonas flavigena DSM 20109] gi|296021143|gb|ADG74379.1| integrase family protein [Cellulomonas flavigena DSM 20109] Length = 308 Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 73/297 (24%), Positives = 137/297 (46%), Gaps = 12/297 (4%) Query: 24 NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83 +L +RG+S+ T+++Y D L + + + ++ T +R +++ + Sbjct: 21 HLRAQRGVSEHTVRAYLGDVDHLLNHAV-----RQGVTRVDEIDLTVLRGWLAAMAAADL 75 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 ++ R + ++F ++ + L + + +LP L + L+D Sbjct: 76 SRATVARRAAAARTFFRWATHTSRVSADPTLRLGTARAGGALPTVLALEPVTRLLDAARE 135 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 + + + R+ A + LLY G+R+ E ++ + TLR+ GKGDK R+VP Sbjct: 136 RAA-DGDPVHVRDWATVELLYATGVRVGELCGADVDDLDLQELTLRVVGKGDKQRVVPFG 194 Query: 204 PSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 +A+ + P + + L G RG ++ + + +L +G+ Sbjct: 195 RPAARAVGAWLATGRPRLVREDSCGALLLGRRGGRIDQRQVRTVVHELAALVGVD-DVAP 253 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRH+ ATHLL G DLR++Q ILGH LSTTQ YT+V+++ + ++ HP Sbjct: 254 HALRHTAATHLLEGGSDLRTVQEILGHASLSTTQRYTHVSAER----LRSAFELAHP 306 >gi|300872291|gb|ADK38973.1| IntI4 [Vibrio sp. V91(2010)] Length = 299 Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 92/188 (48%), Gaps = 38/188 (20%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206 +D ++ + LLYG GLR+ E + L Q+I D +RI QGKG K R V L P + Sbjct: 101 VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 160 Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233 ++ I YYD P++ + P F+ + Sbjct: 161 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 220 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R +N V Q+ +R+ + G+ + T HTLRHSFATHLL G D+R+++ LGH + Sbjct: 221 RRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVREQLGHTDVK 280 Query: 294 TTQIYTNV 301 TTQIYT+V Sbjct: 281 TTQIYTHV 288 >gi|295093615|emb|CBK82706.1| Site-specific recombinase XerD [Coprococcus sp. ART55/1] Length = 306 Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 81/291 (27%), Positives = 140/291 (48%), Gaps = 21/291 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +N+L+ ++ L + TL++Y+ D +QF +L I +S + + +I + Sbjct: 9 KNYLEYCGKQKCLDEKTLKAYKIDLKQFSDYLCS--------SDITNVSTSILEDYIGEL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALT 136 K +++KR ++ K+F YL+ ++I + N N +K + LP+ + + T Sbjct: 61 H-NKYKPKTVKRKIASAKAFFHYLEYKEIL-DRNPFNKLQIKFREPVILPKTIPLRTVET 118 Query: 137 LVDNVLLHTSHETKWIDARNS----AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 ++ + + RNS A++ LL+ G+RISE +L +I ++ I G Sbjct: 119 ILSTIYEQLNCAKTIYQRRNSLRDAAVIELLFATGMRISELCALKVNDINLYDGSILIYG 178 Query: 193 KGDKIRIVPLL-PSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 KGDK R + + PSV + +Y D +N N F G+ L +R I + Sbjct: 179 KGDKERRLQIGNPSVISILNKYEVDFHSEIMNCN---HFFANQSGRSLTDQTVRRMINKY 235 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + L T H RH+FAT LL D+R IQ +LGH ++ T+IYT+V Sbjct: 236 TALAAIDLHITPHMFRHTFATSLLEADVDIRYIQEMLGHSSINITEIYTHV 286 >gi|302391937|ref|YP_003827757.1| integrase family protein [Acetohalobium arabaticum DSM 5501] gi|302204014|gb|ADL12692.1| integrase family protein [Acetohalobium arabaticum DSM 5501] Length = 310 Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 85/298 (28%), Positives = 147/298 (49%), Gaps = 18/298 (6%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTE---EKITIQTIRQLSYTEIRAFISKRRTQKIG 84 ERG S+ T+ Y+ D F +L + E++ + I + +E + I + Sbjct: 20 ERGYSESTVNHYKHDLSVFGRYLEKEFDCNLEELNVTNINRFEVSEFLSDIILVKDNSPE 79 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS-NSLPRALNEKQALTLVDNVLL 143 R+ R L ++SF +YLKKR I + ++ K S P LNEK ++ + Sbjct: 80 ARN--RKLYSLRSFFEYLKKRNIIKNNPTDSIEASKSELKSEPIYLNEKNMEKYLEAI-- 135 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 ++ +K+ +R+ AI L GLRISE ++L +I + +++ GKG+K R VPL Sbjct: 136 -KNYNSKYC-SRDLAINKLFLYSGLRISELVNLNLDDINYEDQSIKFFGKGNKERYVPLH 193 Query: 204 PSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 AI +Y + P N + + LF + + ++ Q+ +++ + G+ + Sbjct: 194 QEALTAIKDYLPDRNKITP--KNQDARQALFLSNQRRRISVRTIQKMVKKYAKKAGVRNA 251 Query: 260 T--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + T H LRH+FA+ L DLR +Q +LGH +STTQIYT+ + + + E+ D Sbjct: 252 SKITPHKLRHTFASLLYQKTKDLRVLQDLLGHSDISTTQIYTHTDKEQRKSAIDEMPD 309 >gi|303243200|ref|ZP_07329628.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302589255|gb|EFL59075.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 337 Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 88/322 (27%), Positives = 152/322 (47%), Gaps = 42/322 (13%) Query: 1 MEGNNLPEIVSFELLK---ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-- 55 M+ N+ +++S LK ER ++ N T++SY R I L Y E Sbjct: 1 MKNNHFQQLLSSYFLKYIPERTSYSNN----------TIKSY----RDTFILLFQYHEYL 46 Query: 56 ----EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK---IT 108 KI+++T+ + ++ + + S+ + L+ + +F K+++K I Sbjct: 47 HKSLSKISLETMNCKYIEDFLVWLECEKHYSVS--SVNQRLAAVHAFFKFVQKENPEYIE 104 Query: 109 TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168 +++L +++ +K +P +A+ L LL +K R AIL LLY G Sbjct: 105 ICTSVLRIKS-QKVPVMPMNYFSVEAIKL----LLSLPDTSKLEGRRELAILTLLYDSGA 159 Query: 169 RISEALSLTPQNIMDDQ-STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227 R+ E LT ++ + + +T+R+ GKG+K R+VP++P I Y D C + Sbjct: 160 RVQEIADLTFGDVRNVKPATVRLTGKGNKTRVVPIMPQSLSVINSYMDDCKKKTVILSTY 219 Query: 228 PLFRGIRGKPLNPG----VFQRYI---RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280 PLF +G+ L + +Y+ R +R+ L P + HT+RHS + HLL G +L Sbjct: 220 PLFFNKKGEKLTRAGIAYILDKYVDLARSIRQDL-FPNKVSPHTMRHSKSMHLLEGGVNL 278 Query: 281 RSIQSILGHFRLSTTQIYTNVN 302 I+ LGH + TT+IY N Sbjct: 279 IYIRDFLGHASVVTTEIYAKSN 300 >gi|300872269|gb|ADK38962.1| IntI4 [Vibrio sp. V2(2010)] Length = 293 Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 65/188 (34%), Positives = 90/188 (47%), Gaps = 38/188 (20%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206 +D + LLYG GLR+ E + L Q+I D +RI QGKG K R V L P + Sbjct: 95 VDPKYQLPAKLLYGSGLRLMECIRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPYL 154 Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233 ++ I YYD P++ + P F+ + Sbjct: 155 KEQIALAKRYYDRDLHQNNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 214 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R +N V QR +R+ + G+ + T HTLRHSFATHLL G D+R++Q LGH + Sbjct: 215 RRHHMNETVLQRTVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVK 274 Query: 294 TTQIYTNV 301 TTQIYT+V Sbjct: 275 TTQIYTHV 282 >gi|262164337|ref|ZP_06032075.1| integron integrase IntI4 [Vibrio mimicus VM223] gi|262026717|gb|EEY45384.1| integron integrase IntI4 [Vibrio mimicus VM223] Length = 320 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 65/188 (34%), Positives = 90/188 (47%), Gaps = 38/188 (20%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206 +D + LLYG GLR+ E + L Q+I D +RI QGKG K R V L P + Sbjct: 118 VDPKYQLPAKLLYGSGLRLMECIRLRIQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 177 Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233 ++ I YYD P++ + P F+ + Sbjct: 178 KEQIALAKRYYDKDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 237 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R +N V QR +R+ + G+ + T HTLRHSFATHLL G D+R++Q LGH + Sbjct: 238 RRHHMNETVLQRTVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVK 297 Query: 294 TTQIYTNV 301 TTQIYT+V Sbjct: 298 TTQIYTHV 305 >gi|160880725|ref|YP_001559693.1| integrase family protein [Clostridium phytofermentans ISDg] gi|160429391|gb|ABX42954.1| integrase family protein [Clostridium phytofermentans ISDg] Length = 291 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 77/286 (26%), Positives = 143/286 (50%), Gaps = 19/286 (6%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 TL +Y D +++ +FL ++ ++ ++++ T I +F+ ++ + ++ R+L Sbjct: 22 TLSAYRIDLKRWYLFL-----QENSVSESKKITETMINSFLLQQEKEGKSKATVNRNLVS 76 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 I+SFL YL K ++ K + PR L ++Q L+L+ +T Sbjct: 77 IRSFLFYLMKHGKLIGDPTERIKPPKVEIAPPRYLTKEQVLSLLSAPDSNTKR-----GL 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ A+L L+Y G+++SE L ++I + ++ + K R+VP + R A LE Y Sbjct: 132 RDKAMLELMYATGMKVSEIGGLKKEDINLKFGCVTVR-ELKKNRVVPFGQAAR-ASLEAY 189 Query: 215 DLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 L D ++ + P LF G +G+P+ + ++ + +GL T +R+SFA H+ Sbjct: 190 -LASED-DVRKESPYLFLGRQGEPMTRQGVWKIMKYYGKQIGLEEDLTPQAIRNSFAIHM 247 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + NG DL S++ ++GH ++ TQ YT K Y +THP Sbjct: 248 IENGADLNSMKELMGHANITATQHYT----KQRIGETFGTYHKTHP 289 >gi|11345545|gb|AAD55407.2|AF180939_1 site-specific recombinase IntI [Vibrio mimicus] Length = 320 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 65/188 (34%), Positives = 90/188 (47%), Gaps = 38/188 (20%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206 +D + LLYG GLR+ E + L Q+I D +RI QGKG K R V L P + Sbjct: 118 VDPKYQLPAKLLYGSGLRLMECIRLRIQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 177 Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233 ++ I YYD P++ + P F+ + Sbjct: 178 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 237 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R +N V QR +R+ + G+ + T HTLRHSFATHLL G D+R++Q LGH + Sbjct: 238 RRHHMNETVLQRTVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVK 297 Query: 294 TTQIYTNV 301 TTQIYT+V Sbjct: 298 TTQIYTHV 305 >gi|42524456|ref|NP_969836.1| site-specific recombinase [Bdellovibrio bacteriovorus HD100] gi|39576665|emb|CAE80829.1| site-specific recombinase [Bdellovibrio bacteriovorus HD100] Length = 294 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 91/311 (29%), Positives = 146/311 (46%), Gaps = 27/311 (8%) Query: 11 SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSY- 68 +F+L + +L+ + + S LT++ Y D Q AF Y + + ++I + Sbjct: 4 AFKLSENIDKYLKYMTFIKSASPLTIKHYSLDLMQ-----AFNYEDPSVKAKSISESELL 58 Query: 69 TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 + RA ++ + R+ R + +KSF + + +T + + + K LP Sbjct: 59 STARAAFNQWAHLSLASRN--RKAATLKSFFSWAFEESLTEKDLSVQITCPKVPKKLPHF 116 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 ++ +AL+ VL ETK I + + LLYG GLR+SEA +L + Q L Sbjct: 117 VSVDEALS----VLKSFDSETK-IPLKEKVLFLLLYGGGLRVSEACNLKWSEVQTSQKVL 171 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 R++GKG K R+V L + +L++ FD + KPLN +R Sbjct: 172 RVKGKGSKERVVALPSLTVEVLLKWKKESSFDEYV---------FGEKPLNSRTAYEMVR 222 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 Q GL H LRHSFATHLLS+G +LR++Q +LGH L T+ YT++ G D Sbjct: 223 QSGIRAGLLKPLHPHALRHSFATHLLSSGANLRTLQELLGHESLQATEKYTHL----GID 278 Query: 309 WMMEIYDQTHP 319 + + HP Sbjct: 279 QLARTMENLHP 289 >gi|254168378|ref|ZP_04875223.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] gi|197622659|gb|EDY35229.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] Length = 255 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/187 (33%), Positives = 97/187 (51%), Gaps = 19/187 (10%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 KK LP L+ + ++ + +H K + +L LY G+R+ E ++ + Sbjct: 79 KKKEKLPVVLSRDEVKRMI-----YGTHNIK-----HRLVLMFLYYAGMRLQEVRNIRWE 128 Query: 180 NIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238 ++ ++ + I+ KGDK R+V L P++ K LE Y + +F RGK Sbjct: 129 DVEFEREIIHIKVAKGDKERVVFLHPNL-KNTLEIYGRKS-------KGYVFMSQRGKKY 180 Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 +P Q ++ R + + T HTLRHSFATHLL G D+R IQ +LGH L TTQIY Sbjct: 181 SPKSIQLIVKNAARRAKINKNVTPHTLRHSFATHLLEGGADIRYIQQLLGHKHLKTTQIY 240 Query: 299 TNVNSKN 305 T+V +K+ Sbjct: 241 THVANKD 247 >gi|319954827|ref|YP_004166094.1| integrase family protein [Cellulophaga algicola DSM 14237] gi|319423487|gb|ADV50596.1| integrase family protein [Cellulophaga algicola DSM 14237] Length = 375 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 86/291 (29%), Positives = 137/291 (47%), Gaps = 29/291 (9%) Query: 28 ERGLSKLTLQSYECDT-RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 E L KL L+ Y +T R ++ + TI I L+ ++R ++ K + + Sbjct: 108 EEYLLKLELKRYADNTVRNYVSCFEGFINYYYTIDPI-ALNEIDVRKYLQKLIQEGKSNS 166 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 + +++ IK F + + + + +K LP +++ + + +++N Sbjct: 167 YINMAVNSIKFFYEIVH----GMPNRFYAIERPRKERQLPEVISKDEIVLIMNN------ 216 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPS 205 T + R I+ LLY GLR +E L+L +I + ++I+ KG+K RI L PS Sbjct: 217 --TNTLKHR--CIIGLLYSAGLRRAELLNLNITDIDSKRMVVKIKNAKGNKDRISLLSPS 272 Query: 206 VRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 + K + EYY + P LF G G +P I G+ T H Sbjct: 273 ILKDLQEYYKEYRPKKF-------LFEGQSGGKYSPTSVLNLISSAALRAGILKRVTPHM 325 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 LRHSFATHLL NG D+R IQ +LGH TT+IYT+V +++ MEI D Sbjct: 326 LRHSFATHLLENGTDIRHIQLLLGHSSTKTTEIYTHVANRS----FMEIKD 372 >gi|329923290|ref|ZP_08278774.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp. HGF5] gi|328941382|gb|EGG37674.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp. HGF5] Length = 311 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 82/282 (29%), Positives = 138/282 (48%), Gaps = 25/282 (8%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87 +R +K T Q+Y D + FL + + I +++ ++ ++++ R G R Sbjct: 23 DREYAKDTQQAYLHDIKHFL--------NSLEGKPITEVTDIDVMYYLTQVRESGAGARY 74 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLK-KSNSLPRALNEKQALTLVDNVLLHTS 146 R S I+ F K + + K+ + + +++ K + N P L + ++D L Sbjct: 75 RNRCQSAIRLFYKVMIRFKLASINPAMDIEKAKVEKNRQPTYLQK----PILDACL--NG 128 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 E ++ R+ I+ L+ GLR+SE + L + + S++ + GKG+K R +PL + Sbjct: 129 IEGRY-KIRDVTIIALMAYAGLRVSEIVKLNLSDFDMENSSIAVLGKGNKWRYIPLPAEL 187 Query: 207 RKAILEYYD--LCPFDLNLN-IQLPLFRGIRGKPLNPGV----FQRYIRQLRRYLGLPLS 259 K + Y + + P N + FR K + + F+ Q + G LS Sbjct: 188 NKLLHMYLEERMVPRSTKDNAFFVSQFRRRISKRMVQTIAEKTFEAMTEQFPQLSGQSLS 247 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 AH LRHSFAT LL NG DLR++Q +LGH +STTQIYT+V Sbjct: 248 --AHKLRHSFATELLRNGADLRAVQELLGHEDISTTQIYTHV 287 >gi|302391372|ref|YP_003827192.1| integrase family protein [Acetohalobium arabaticum DSM 5501] gi|302203449|gb|ADL12127.1| integrase family protein [Acetohalobium arabaticum DSM 5501] Length = 310 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 86/305 (28%), Positives = 145/305 (47%), Gaps = 33/305 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY---------TEEKITIQTIR----Q 65 +++LQ +E+E+G + T+++YE D L+FL +Y +E + I+ R Sbjct: 8 EDFLQWIEVEKGYADSTIKAYEYD---ILLFLRWYDGGEIIQGENKEDLKIKLKRIELEN 64 Query: 66 LSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 ++ E+R F+ + + + R ++ +KSF YL K + T++ ++ KK + Sbjct: 65 VTLEELRKFVVYLAQELDYSNTTRCRKIASLKSFWNYLCKVRKLTDNIASDLSLPKKEPT 124 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 L +K+ N L E R+ +IL +L G+R+SE ++L +I + Sbjct: 125 TEIYLKQKEI-----NQLFVAIDEISRNIIRDKSILAVLLYTGIRVSECINLNLSDIDLE 179 Query: 185 QSTLRI-QGKGDKIRIV----PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239 LRI +GKG K R++ L+P + K L+ + N PLF RG LN Sbjct: 180 SRILRIVKGKGGKSRMIGINKELMPYI-KDYLQKRQQVLIEGN-----PLFLSERGNRLN 233 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 Q + ++ GLP T H RH+F +HL NG L I+ I GH L++ Q Y Sbjct: 234 KRTLQYHFKRWVEEAGLPDEVTVHKCRHTFLSHLCQNGASLAEIKQISGHKNLASLQRYL 293 Query: 300 NVNSK 304 + + K Sbjct: 294 HNDQK 298 >gi|298368470|ref|ZP_06979788.1| tyrosine recombinase XerD [Neisseria sp. oral taxon 014 str. F0314] gi|298282473|gb|EFI23960.1| tyrosine recombinase XerD [Neisseria sp. oral taxon 014 str. F0314] Length = 292 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 69/234 (29%), Positives = 116/234 (49%), Gaps = 11/234 (4%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R+LS K +L++ + ++ + + K LP + E Q L+ + T Sbjct: 67 SQARALSACKRLYAWLEETEKRADNPTRFLTSPHKEQPLPGLITEAQIEKLLAAPDVDTP 126 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 H R+ +L ++Y GLR++EA+ L ++ ++ + GKGDK R VPL Sbjct: 127 H-----GLRDKTLLEVMYATGLRVTEAVKLKMSDLDLNKGWINTIGKGDKQRYVPLGEEA 181 Query: 207 RKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 I Y + P L I LF + ++ + +++ G+ S + H L Sbjct: 182 VYWIERYCAESRPLLLKNKICDELFVSQKKSGISRQLAWMIVKEYADAAGI-RSLSPHGL 240 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 RH+FATHL+++G DLR +Q +LGH +STTQIYT+V ++ + E+ + HP Sbjct: 241 RHAFATHLVNHGADLRVVQMLLGHADISTTQIYTHVANQR----LKELVGKHHP 290 >gi|323143041|ref|ZP_08077746.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei YIT 12066] gi|322417182|gb|EFY07811.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei YIT 12066] Length = 307 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 85/165 (51%), Gaps = 6/165 (3%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ AI LL+ GLR+ E ++L ++ + +R+ GKG K R VP+ I Y Sbjct: 140 RDRAIAELLFSSGLRVGELVALNLGDLDETAQEVRVFGKGGKERSVPVGSQALNWIRIYL 199 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 + D LF G+ + Q+ + +L GL + + H LRHSFAT LL Sbjct: 200 KVR--DAFNPEDTALFLNRFGRRMTTRAVQQNLDKLASKSGLSIKISPHKLRHSFATELL 257 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 NG DLR +Q +LGH L+ TQ+YT++N + EI+ + HP Sbjct: 258 GNGADLRMVQEMLGHSSLAATQVYTHINFAK----LQEIFSKAHP 298 >gi|114762531|ref|ZP_01441975.1| INTEGRASE/RECOMBINASE [Pelagibaca bermudensis HTCC2601] gi|114767359|ref|ZP_01446166.1| INTEGRASE/RECOMBINASE [Pelagibaca bermudensis HTCC2601] gi|114540563|gb|EAU43638.1| INTEGRASE/RECOMBINASE [Roseovarius sp. HTCC2601] gi|114544786|gb|EAU47791.1| INTEGRASE/RECOMBINASE [Roseovarius sp. HTCC2601] Length = 334 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 90/301 (29%), Positives = 135/301 (44%), Gaps = 35/301 (11%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q WL +R S T++SY R L F+A + T+ +S +E+RAF++ Sbjct: 16 QEWLAE---QRSASIHTIKSYRDTWRMLLRFVAERNGGGVARITLADVSASEVRAFLTHA 72 Query: 79 ---RTQKIGDRSLKRSLSGIKSFLKYLKKRK---ITTESNILNMRNLKKSNSLPRALNEK 132 R IG R+ + L+ I+SF ++ + I + +L + +K + P L Sbjct: 73 EHGRKGTIGTRNCR--LAAIRSFFSFVADKDPEYIAQCAEVLTIPLKRKPTAAPCYLEPG 130 Query: 133 QALTLVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRI 190 + V+ +L T I+ R+ +L LLY G RI EAL L P I + +R+ Sbjct: 131 E----VEAILAQPDRST--IEGMRDHVLLSLLYNSGARIQEALDLCPGAIRFEAPYYVRL 184 Query: 191 QGKGDKIRIVPLLP---SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GV-FQR 245 GKG K RI PL P ++ K +LE P + +F G+PL GV F+ Sbjct: 185 YGKGRKERICPLWPETVALMKKLLERQPRAPDER-------IFVNRYGEPLGASGVRFKL 237 Query: 246 YIRQLRRYLGLPL----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 P T H+ RH+ A HL++ G D+ I+S LGH L TT Y Sbjct: 238 AAYVAAAAKTTPSLRLKHVTPHSFRHATAVHLVAAGVDITVIRSWLGHVSLDTTNHYAQA 297 Query: 302 N 302 N Sbjct: 298 N 298 >gi|320156126|ref|YP_004188505.1| integron integrase IntI4 [Vibrio vulnificus MO6-24/O] gi|326424001|ref|NP_761248.2| Integron integrase IntI4 [Vibrio vulnificus CMCP6] gi|319931438|gb|ADV86302.1| integron integrase IntI4 [Vibrio vulnificus MO6-24/O] gi|319999378|gb|AAO10775.2| Integron integrase IntI4 [Vibrio vulnificus CMCP6] Length = 320 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 65/194 (33%), Positives = 87/194 (44%), Gaps = 38/194 (19%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV-------PLL 203 ID R + LLYG GLR+ E + L Q++ LR+ QGKG K R V PLL Sbjct: 118 IDPRYKLHIMLLYGSGLRVMECVRLRIQDVDYHYGALRVWQGKGGKNRTVTLAKELYPLL 177 Query: 204 PSVRKAILEYYDL----------------------CPFDLNLNIQLPLFRG--------I 233 L YY D N + P R + Sbjct: 178 KEQEALALRYYQKDRITAGYAGVWLSSSLQRKYQGAEMDFNWHYLFPSDRLSRDPESDLL 237 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R +N QR +++ + G+ S + HTLRHSFATHLL +G D+R++Q LGH + Sbjct: 238 RRHHINEQALQRAVKRAAKDAGITKSISCHTLRHSFATHLLESGADIRTVQEQLGHSDVK 297 Query: 294 TTQIYTNVNSKNGG 307 TTQIYT+V + G Sbjct: 298 TTQIYTHVLERGAG 311 >gi|300855279|ref|YP_003780263.1| putative site-specific recombinase [Clostridium ljungdahlii DSM 13528] gi|300435394|gb|ADK15161.1| predicted site-specific recombinase [Clostridium ljungdahlii DSM 13528] Length = 328 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 93/318 (29%), Positives = 154/318 (48%), Gaps = 27/318 (8%) Query: 5 NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE--------E 56 NL I + EL + ++L L RG SK T Y+ D F FL Y E Sbjct: 4 NLSNIYNPELPQCLNDFLNYLGTIRGKSKNTQDGYQVDLTMFFRFLKIYRGIVKENYEFE 63 Query: 57 KITIQTI-----RQLSYTEIRAFIS-KRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITT 109 I I I R+++ +++ AFIS + G+ + R ++ +KSF KYL K K+ Sbjct: 64 NIDISDINTDFIRKITLSDLYAFISFAENYRNNGNYARARKVACLKSFFKYLFSKAKLID 123 Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169 + L + + K P L+ K++ L++++ + K+ + R+ I+ CG+R Sbjct: 124 TNPALELESPKIDKRNPIYLSLKESKILLNSI------DGKFKE-RDYCIITFFLNCGMR 176 Query: 170 ISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLP 228 +SE S+ I +D TL + GKG+K R + L + A+ Y ++ + + Sbjct: 177 LSELCSINISKIKED--TLTVVGKGNKERTIYLNRACLTALNNYLEIRNKDYDKIKDKDA 234 Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG-DLRSIQSI 286 LF +N + +++ + GL + T H LRH+ AT + G D+RS+Q I Sbjct: 235 LFLSKNHTRINKRSVEMMLKKYLKNAGLDSNKYTPHKLRHTAATLMYKYGNVDIRSLQKI 294 Query: 287 LGHFRLSTTQIYTNVNSK 304 LGH +STTQIYT+V+ + Sbjct: 295 LGHENVSTTQIYTHVDDE 312 >gi|289595770|ref|YP_003482466.1| integrase family protein [Aciduliprofundum boonei T469] gi|289533557|gb|ADD07904.1| integrase family protein [Aciduliprofundum boonei T469] Length = 270 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/187 (33%), Positives = 97/187 (51%), Gaps = 19/187 (10%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 KK LP L+ + ++ + +H K + +L LY G+R+ E ++ + Sbjct: 94 KKKEKLPVVLSRDEVKRMI-----YGTHNIK-----HRLVLMFLYYAGMRLQEVRNIRWE 143 Query: 180 NIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238 ++ ++ + I+ KGDK R+V L P++ K LE Y + +F RGK Sbjct: 144 DVEFEREIIHIKVAKGDKERVVFLHPNL-KNTLEIYGRKS-------KGYVFMSQRGKKY 195 Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 +P Q ++ R + + T HTLRHSFATHLL G D+R IQ +LGH L TTQIY Sbjct: 196 SPKSIQLIVKNAARRAKINKNVTPHTLRHSFATHLLEGGADIRYIQQLLGHKHLKTTQIY 255 Query: 299 TNVNSKN 305 T+V +K+ Sbjct: 256 THVANKD 262 >gi|315606523|ref|ZP_07881538.1| tyrosine recombinase XerC [Prevotella buccae ATCC 33574] gi|315251929|gb|EFU31903.1| tyrosine recombinase XerC [Prevotella buccae ATCC 33574] Length = 293 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 79/302 (26%), Positives = 137/302 (45%), Gaps = 15/302 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L+ E S+ T++SY D R F F + + IR ++ Sbjct: 4 EKFLNYLKFELNRSERTVKSYGEDLRAFEEFFKNLDGH----PSWESVDSDIIRDWMESM 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S+ R LS ++SF ++ R++ + ++ KK LP+ L E + L+ Sbjct: 60 MDKGNNATSINRRLSALRSFYRFALARELVVKDPAHDVVGPKKKKPLPQFLKENEINALL 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D+ + +++ D R I+ Y G+R+SE L ++ L++ GK +K R Sbjct: 120 DSDMWEDTYD----DMRARTIVMTFYETGMRLSELTGLRDADVDFVNHELKVTGKRNKQR 175 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQLRRYLGLP 257 I+P + + + +Y L N F +G + N V + + L R L Sbjct: 176 IIPFGAELAQTLADYKSLRDATERGNCG-KFFLTDKGLAMQNAQVREIVKKHLSRVCTLK 234 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T H LRH+FAT +L++ L S++ +LGH RLSTT+IYT+ + + +Y Sbjct: 235 -KRTPHVLRHTFATAMLNHEAGLESLKRLLGHARLSTTEIYTHTTFEQ----LKRVYTNA 289 Query: 318 HP 319 HP Sbjct: 290 HP 291 >gi|304316783|ref|YP_003851928.1| integrase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778285|gb|ADL68844.1| integrase family protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 288 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 83/301 (27%), Positives = 143/301 (47%), Gaps = 20/301 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q ++ L+ ++ LS T+ SY+ D QFL +L EKI I ++ I +++ Sbjct: 6 QAFIDYLKNDKKLSDNTVDSYKRDIIQFLEYL-----EKINIGCF-EVKKATIINYMNLL 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + ++ R LS IKSF +YL ++ E + K +P L+ Q V Sbjct: 60 KHKNRSQATISRHLSSIKSFYQYLFMNRLIDEEPAYTLDAPKIERKVPVTLSIDQ----V 115 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D LL E R+ AI+ +LY GL++SE +SL ++ + + I K K R Sbjct: 116 DK-LLSYEFEKSEKGLRDKAIIEVLYATGLKVSELISLRIDDV--NLNYGYIYCKSAKER 172 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +P+ S A+ Y + N+ LF +RG+ L + I++ + Sbjct: 173 FIPIGESAVDALQNYMSVRK---NIKNNDHLFLNMRGEALTRQGCWKIIKEYTDIVNPGF 229 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 T LR SFA HLL NG D+RS+Q +LG+ +++ ++ + ++ + E+Y ++H Sbjct: 230 DITPSILRRSFAKHLLENGADIRSVQEMLGYKSVNSNELISLISKSK----IKEVYKKSH 285 Query: 319 P 319 P Sbjct: 286 P 286 >gi|154498007|ref|ZP_02036385.1| hypothetical protein BACCAP_01987 [Bacteroides capillosus ATCC 29799] gi|150272997|gb|EDN00154.1| hypothetical protein BACCAP_01987 [Bacteroides capillosus ATCC 29799] Length = 344 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 74/215 (34%), Positives = 115/215 (53%), Gaps = 20/215 (9%) Query: 97 SFLKYL-KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155 SF KY+ K K+ E+ + ++ + + +LP L+ +++ L+++V E K R Sbjct: 115 SFYKYITSKAKLMDENPMQDLDSPRLKKALPHYLSLDESIQLLESV----DGENK---ER 167 Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215 + IL + CGLRISE + L +I DQ LR+ GKG+K RI+ L + R+AI ++ Sbjct: 168 DYCILIIFLNCGLRISELVGLNLTDIRKDQ--LRVLGKGNKERILFLNEACRQAIDDWLA 225 Query: 216 L----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFA 270 + D N LF R + I+ GL S +AH LRH+ A Sbjct: 226 VRGTQGIIDKN-----ALFITRRHTRMTTDAVHYMIKNRLTAAGLDASMYSAHKLRHTAA 280 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 T +L NG D+R++Q +LGH L+TTQIYT+V+S + Sbjct: 281 TLMLQNGVDVRTLQEVLGHDHLNTTQIYTHVDSDD 315 >gi|169830947|ref|YP_001716929.1| phage integrase family protein [Candidatus Desulforudis audaxviator MP104C] gi|169637791|gb|ACA59297.1| phage integrase family protein [Candidatus Desulforudis audaxviator MP104C] Length = 286 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 77/282 (27%), Positives = 123/282 (43%), Gaps = 25/282 (8%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 QN + RGL+ T Y R+FL ++ T + + + L + R + K R Sbjct: 9 FQNHLLGRGLAPATAGVYLGHVRRFLAWVEG-THGEADVAAVTSLDVADYRRHLLKDRKP 67 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 ++ +L + SF + K + +R ++ PR L ++ LV V Sbjct: 68 A----TVNNALDALSSFFAWAKDAGLVQADPTDGVRRAQEERGAPRWLTRREVGALVRAV 123 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIR 198 H S R+ A++ LL GLR+SEA+ L Q+ + + + + +GKG+K R Sbjct: 124 QKHGSK-------RDQALVTLLLHTGLRVSEAVGLKTQDAVIRERSGHVIVRRGKGEKYR 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 VPL + RKA+ ++ P P LF G PL ++ +L R G+ Sbjct: 177 EVPLNVTARKALQDWLAAHPGG-------PWLFPGRGEAPLTRWAAEKMFAKLGRLAGV- 228 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 T H LRH+F L+ G L + + GH L+TT YT Sbjct: 229 -EVTPHKLRHTFCKMLVDAGESLDRVAVLAGHANLNTTARYT 269 >gi|332158066|ref|YP_004423345.1| integrase/recombinase [Pyrococcus sp. NA2] gi|331033529|gb|AEC51341.1| integrase/recombinase [Pyrococcus sp. NA2] Length = 279 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 76/237 (32%), Positives = 127/237 (53%), Gaps = 28/237 (11%) Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 F+++ + + RS+ + +K++ K+ + TE+ L + K+ LPR+L E++ Sbjct: 48 FLARLKKKGYSIRSINLIVHALKAYFKF---EGLETEAEKLKTPKIPKT--LPRSLTEEE 102 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG- 192 +++ + R+ IL LLYG GLR+SE +L +++ ++ L ++G Sbjct: 103 IKKVIEAAK----------NLRDRLILLLLYGAGLRVSELCNLKIEDVNFEKGFLIVRGG 152 Query: 193 KGDKIRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 KG K RI+PL ++ + I Y D P+ + + + RG + K L+P ++ Sbjct: 153 KGGKDRIIPLSETLLQEIQRYLKTRKDNSPY-----LFVEIRRGKKDK-LSPKTVWWIVK 206 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + G+ L T H LRHSFATH+L G D+R IQ +LGH LSTTQIYT V +K+ Sbjct: 207 KYGEEAGINL--TPHQLRHSFATHMLERGIDIRIIQELLGHASLSTTQIYTKVTTKH 261 >gi|150389215|ref|YP_001319264.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF] gi|149949077|gb|ABR47605.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF] Length = 354 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 91/295 (30%), Positives = 142/295 (48%), Gaps = 45/295 (15%) Query: 22 LQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 LQ LE + +G S T +SY ++FL F+ E +T Q + + Y + Sbjct: 81 LQQLEKQFTLKGYSPKTKKSYIGHVKRFLGFIN-NKPEVLTKQDVEKYMYHLLNV----- 134 Query: 79 RTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 Q+ ++LS IK + ++ LKK K+ + ++ KK +LP L++++ L++ Sbjct: 135 --QENSHAFANQALSAIKFYYQHSLKKDKV-----LYDLPRPKKEKTLPNILSQREVLSI 187 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196 +D+V + ++ +IL L Y GLRI E + L +I D+ + + QGKG K Sbjct: 188 LDSV----------NNIKHKSILLLTYSAGLRIGEVVRLKVGDIDSDRMLIHVRQGKGRK 237 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKP---LNPGVFQRYIRQL 250 R +L V + L Y + I+ P LF G GK L Q+ Sbjct: 238 DRYT-ILSEVALSTLRKYAM--------IEKPKDWLFPG--GKENCFLTERSVQKIFSVA 286 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + + + H+LRHSFATHLL G DLR IQ +LGH TT+IYT+V+ N Sbjct: 287 CKRAKVKKHASVHSLRHSFATHLLEGGTDLRYIQELLGHSSSKTTEIYTHVSEAN 341 >gi|323703842|ref|ZP_08115478.1| integrase family protein [Desulfotomaculum nigrificans DSM 574] gi|323531199|gb|EGB21102.1| integrase family protein [Desulfotomaculum nigrificans DSM 574] Length = 293 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 74/297 (24%), Positives = 145/297 (48%), Gaps = 36/297 (12%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 GL+ T+ +Y+ D F + T+++ + + + E + ++ Q + ++ Sbjct: 20 GLALSTVNAYQKDIAYFAKWYMDTTDKEPHLGDVTSIDLREYQGYMQS--VQDLRPATIN 77 Query: 90 RSLSGIKSFLKYLKKR----KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 R ++ ++ ++++ ++ ++ T I+ ++ + P+AL + N LL Sbjct: 78 RRMAALEKYIRWAHEKGYVDRLPTFPKIV-----REQKTPPKALGRVE-----QNRLLRE 127 Query: 146 SHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 + + RN A++ L+ CGLR+SE A+ LT +I + + ++GKG+K R VP+ Sbjct: 128 AERRGKV--RNIALIRLMMSCGLRVSEVVAIRLTDLDIGERHGMVAVRGKGNKYREVPVP 185 Query: 204 PSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P RKAI E+ + + P LF G + ++ ++ + ++ GL + Sbjct: 186 PEARKAIREWM------IERAKRYPDSDWLFPNRNGGHITARNAEQLVKNIGKFAGLDIH 239 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 H LRH+ AT+++ G DL ++ ILGH L+TT IYT + K MME ++ Sbjct: 240 --PHVLRHTAATNMIRTGADLVTVAQILGHANLNTTAIYTKPDRKT----MMEALEK 290 >gi|315024066|gb|EFT37068.1| Integrase, site-specific recombinase [Riemerella anatipestifer RA-YM] Length = 293 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 80/305 (26%), Positives = 142/305 (46%), Gaps = 24/305 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L + IE+ S TL SY D + F F+ +E T+ + IR F+ Sbjct: 5 EKFLDYITIEKRYSLNTLASYSRDLQDFSDFV----KETEGADTLISVDKKVIRNFVVYL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALT 136 + R++ R LS ++SF YL K I + S + + +LK +P + E + L Sbjct: 61 SENNLSKRTINRKLSALRSFYIYLVKLGIISASPMETVSSLKFYGEKQIPFSQKEMENLQ 120 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 + + N I+ LLY G+R SE L +++ Q+ +R+ GKG+K Sbjct: 121 ---------NLLNEEKLLLNKLIIELLYQTGMRKSELCRLALKDVDFIQNRIRVVGKGNK 171 Query: 197 IRIVPLLPSVRKAILEYYDL--CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 +R +P+ ++++ + Y + P NL+ F G+ L + + Sbjct: 172 MREIPISENIKRELKLYLEKERKPTKENLDY---FFVRESGQKLTGKFVYSVVNDYLSAV 228 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 + H LRHSFATH+L NG ++ ++ ILGH L++TQ+YT+ + + + ++ Sbjct: 229 TSKKKKSPHVLRHSFATHVLENGAEIAQVKEILGHASLASTQVYTSTDV----NKLKKVL 284 Query: 315 DQTHP 319 + HP Sbjct: 285 NSFHP 289 >gi|26986514|gb|AAK02082.2| site-specific recombinase IntIA [Listonella pelagia] Length = 319 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 81/318 (25%), Positives = 131/318 (41%), Gaps = 61/318 (19%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ-LSYTEIRAFISKRRTQKIGDRS 87 R S T++SY +++++F F K++ + + Q LS+ ++ K+ ++ Sbjct: 16 RHYSNKTIESYLFWIKRYIVFHQFAHPSKLSEEHVVQFLSHIAVK--------DKVAVKT 67 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 +L I + + ++ E KK LP L + + + Sbjct: 68 QALALCSIAFLYRDFFQTPLSLEMRFQKSLTEKK---LPVVLTRDEIRRFIQH------- 117 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206 ID + LLYG G+R+ E L L Q+I D +R+ QGKG K R V L + Sbjct: 118 ----IDPKYKLQTLLLYGSGVRLMECLRLRIQDIDYDYGAIRVWQGKGGKNRTVTLAKEL 173 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGI--------------------------------- 233 ++ DL + +P + G+ Sbjct: 174 HSSLKAQVDLARSYYQKDCHMPGYAGVYISEGLQRKYPNAQLDFNWHFLFPSAKLSVDPE 233 Query: 234 ----RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289 R +N QR +++ + G+ S T HTLRHSFATHLL +G D+R++Q LGH Sbjct: 234 MGELRRHHINESALQRAVKRSAKDAGIEKSVTCHTLRHSFATHLLESGADIRTVQEQLGH 293 Query: 290 FRLSTTQIYTNVNSKNGG 307 + TTQIYT+V G Sbjct: 294 SDVKTTQIYTHVERGASG 311 >gi|167749654|ref|ZP_02421781.1| hypothetical protein EUBSIR_00612 [Eubacterium siraeum DSM 15702] gi|167657407|gb|EDS01537.1| hypothetical protein EUBSIR_00612 [Eubacterium siraeum DSM 15702] Length = 357 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 92/347 (26%), Positives = 155/347 (44%), Gaps = 51/347 (14%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAF----------YTEEKIT------IQTIR 64 +L L + S+LT +Y D R F+ FL ++E KI+ I+ + Sbjct: 21 YLNYLTTIKNRSQLTALNYYTDLRMFMRFLKVKNKLVDANEDFSEIKISDLDDKYIKAVT 80 Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNILNMRNLKKSN 123 E +F R+ + RS R ++ F K+L K S +LN+ N Sbjct: 81 LTDAMEFLSFTVSERSNQAKARS--RKAVSLRQFYKFLTNNKAWFAASPMLNLELPSPKN 138 Query: 124 SLPRALNEKQALTLVDNVLLHTSHE--TKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 +LP+ L ++ LLH + + W+D R+ A++ + CG+R+SE + + + Sbjct: 139 ALPKHLTLQEC-----GQLLHEGFKEFSSWMDYRDYAMIIMFLNCGMRLSELVGINVNDF 193 Query: 182 MD--DQS-------TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---- 228 ++ D S ++++ GKG+K RIV L A+ +Y + ++ P Sbjct: 194 VENIDPSQPCVKYLSVKVLGKGNKERIVYLNEQCVDAVTKYTEA-----RKSVADPKEKA 248 Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 LF RG + ++ I + GL + H LRH+ AT + NG D+R ++ +L Sbjct: 249 LFISKRGNRITNRRVEQIIDDRLKACGLAGKGISVHKLRHTAATLMYQNGVDVRVLKEVL 308 Query: 288 GHFRLSTTQIYTNV------NSKNGGDWMMEIYDQTHPSITQKDKKN 328 GH L+TTQIYT+V ++ N M D P + Q + KN Sbjct: 309 GHENLNTTQIYTHVVNTQLRDAINSNPVMDIKNDLPEPDLKQNEDKN 355 >gi|296163709|ref|ZP_06846425.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295886049|gb|EFG65951.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 321 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 62/174 (35%), Positives = 89/174 (51%), Gaps = 7/174 (4%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILE 212 AR+ AIL +LY G+R E + LT +I T+ I QGKG + R +PL + Sbjct: 136 ARDRAILEVLYSTGMRRMELIGLTISDIDLSGGTVMIRQGKGRRDRYIPLGERACYWVEW 195 Query: 213 YYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 Y D + P + LF G+P G +++ G+ H LRH+ AT Sbjct: 196 YCDRIRPSHAVRADEWTLFLTDYGEPFGKGRLSDLVKRYMERAGIR-EGACHVLRHACAT 254 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325 H+L NG D+R IQ++LGH LS+TQIYT V + EI+ THP+ ++D Sbjct: 255 HMLENGADIRFIQALLGHADLSSTQIYTQVAIGK----LKEIHAATHPAKLERD 304 >gi|317133822|ref|YP_004089733.1| integrase family protein [Ruminococcus albus 7] gi|315450284|gb|ADU23847.1| integrase family protein [Ruminococcus albus 7] Length = 326 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 87/318 (27%), Positives = 145/318 (45%), Gaps = 33/318 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF-----YTEEKITIQTIRQLSYTEIRA 73 +++L NL + + LT Y D R FL +L E K TI + I Sbjct: 14 EDFLINLSVIKNRGDLTSSEYYLDIRTFLRYLKVKNKMVSAETKFNDITISDVPIEMIEN 73 Query: 74 FISK---------RRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSN 123 F K + ++ G + R + +K F YL K ++ + N++++ Sbjct: 74 FTKKDAYLYMVWLKDERQNGASARARKTTSLKQFYDYLANKAQLIPKDNMVSLEVPHVKR 133 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 +LP+ L+ + L+ ++ + R+ I+ L CG+R+SE + +I Sbjct: 134 ALPKYLSLDEVQKLLSSIRTKNTE-------RDYCIITLFLNCGMRLSELCGININDISF 186 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI---QLPLFRGIRGKPLNP 240 + TLR+ GKG K RI+ L + AI +Y P+ N + + LF R L+ Sbjct: 187 ENKTLRLMGKGKKERIITLNNNCLDAIEKY---LPYRKNYEMAQNEKALFLSSRKNRLSR 243 Query: 241 GVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRLSTTQIY 298 Q+ I + GL T H LRH+ AT + +NGGD+ +++ ILGH +TT+IY Sbjct: 244 RRVQKIIEECIMDAGLKNTGVTTHKLRHTAATLMYNNNGGDILAVKEILGHESTATTEIY 303 Query: 299 TNVNS---KNGGDWMMEI 313 T++ S KN D M ++ Sbjct: 304 THLGSEKMKNTMDVMEDL 321 >gi|262403450|ref|ZP_06080008.1| integron integrase IntI4 [Vibrio sp. RC586] gi|262349954|gb|EEY99089.1| integron integrase IntI4 [Vibrio sp. RC586] Length = 320 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 78/271 (28%), Positives = 120/271 (44%), Gaps = 53/271 (19%) Query: 70 EIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 E+ F++ Q K+ ++ +L+ + K + K ++ E + + + LP Sbjct: 49 EVEEFLTDLAVQGKVATKTQSLALNSLSFLYKEILKTPLSLE---IRFQRSQLERKLPVV 105 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 L + L+D V D + LLYG GLR+ E + L Q+I D + Sbjct: 106 LTRDEIRCLLDVV-----------DPKYQLPAKLLYGSGLRLMECIRLRVQDIDFDYGAI 154 Query: 189 RI-QGKGDKIRIV----PLLPSVRKAIL---EYYDL----------------------CP 218 RI QGKG K R V L P +++ I YYD P Sbjct: 155 RIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAP 214 Query: 219 FDLNLNIQLPLFR--------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 ++ + P F+ +R +N V Q+ +R+ + G+ + T HTLRHSFA Sbjct: 215 YEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKTVRRSAQEAGIEKTVTCHTLRHSFA 274 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 THLL G D+R++Q LGH + TTQIYT+V Sbjct: 275 THLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305 >gi|218442353|ref|YP_002380677.1| integrase family protein [Cyanothece sp. PCC 7424] gi|218175457|gb|ACK74184.1| integrase family protein [Cyanothece sp. PCC 7424] Length = 273 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 75/288 (26%), Positives = 136/288 (47%), Gaps = 38/288 (13%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 G SK T+ SY+C +QFL F+ + +R ++ ++ +++ R ++ Sbjct: 20 GKSKTTIISYQCHIKQFLEFVG---------KPLRDVTLDDLSLWVN-RLNLTYQPVTVA 69 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 + +KS + + T +N+ + KS L L E+ +L + Sbjct: 70 NKILTVKSLFSFACRVGYLT----VNVGSFIKSPKLKDTLAER---------ILEKAEVK 116 Query: 150 KWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 + I+A R+S +L L+YGCGLR+SE L ++ + ++T + GKG K R+V + P+ Sbjct: 117 RLINATPNERDSVLLSLMYGCGLRVSEVCGLNWSDLRNGKAT--VFGKGAKTRVVIIPPN 174 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + +++ P D +F RG L + I++ G+ ++H L Sbjct: 175 LWDRLMQL----PRDGE-----AVFMSRRGNRLERTYIHKMIKECCHKSGVSEKASSHWL 225 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 RHS A+H + G +LR +Q LGH +L TT+ Y ++N G ++I Sbjct: 226 RHSHASHAVEAGCNLRLLQQSLGHSKLETTEKYLHINPDEGSSQFIDI 273 >gi|255692297|ref|ZP_05415972.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] gi|260622031|gb|EEX44902.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] Length = 368 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/152 (36%), Positives = 82/152 (53%), Gaps = 7/152 (4%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 ++ ++ L+Y GLR SE L+LTPQ+I+ ++ +RI GKG K R L V + EY+ Sbjct: 209 KHHCMISLIYSAGLRRSELLNLTPQDIVSERMLVRIMGKGKKCRYSLLSEKVLHELREYF 268 Query: 215 DLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 + LF G G+ + + +++ + G+ H LRHSFATHL Sbjct: 269 K------EYRPKKWLFEGDTPGEQYSASALVKVLKEAAQRAGIKHRVHVHMLRHSFATHL 322 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 L G DLR+IQ +LGH + TT IY +V S + Sbjct: 323 LEQGTDLRTIQELLGHNDIKTTSIYLHVTSAH 354 >gi|163815939|ref|ZP_02207309.1| hypothetical protein COPEUT_02119 [Coprococcus eutactus ATCC 27759] gi|158448749|gb|EDP25744.1| hypothetical protein COPEUT_02119 [Coprococcus eutactus ATCC 27759] Length = 306 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 81/291 (27%), Positives = 139/291 (47%), Gaps = 21/291 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +N+L+ ++ L + TL++Y+ D +QF +L I +S + + +I + Sbjct: 9 KNYLEYCGKQKCLDEKTLKAYKIDLKQFSDYLCS--------SDITNVSTSILEDYIGEL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALT 136 K +++KR ++ K+F YL+ ++I + N N +K + LP+ + T Sbjct: 61 H-NKYKPKTVKRKIASAKAFFHYLEYKEIL-DRNPFNKLQIKFREPVILPKTIPLHTVET 118 Query: 137 LVDNVLLHTSHETKWIDARNS----AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 ++ + + RNS A++ LL+ G+RISE +L +I ++ I G Sbjct: 119 ILSTIYEQLNCAKTIYQRRNSLRDAAVIELLFATGMRISELCALKVNDINLYDGSILIYG 178 Query: 193 KGDKIRIVPLL-PSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 KGDK R + + PSV + +Y D +N N F G+ L +R I + Sbjct: 179 KGDKERRLQIGNPSVISILNKYEVDFHSEIMNCN---HFFANQSGRSLTDQTVRRMINKY 235 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + L T H RH+FAT LL D+R IQ +LGH ++ T+IYT+V Sbjct: 236 TALAAIDLHITPHMFRHTFATSLLEADVDIRYIQEMLGHSSINITEIYTHV 286 >gi|315230922|ref|YP_004071358.1| phage integrase [Thermococcus barophilus MP] gi|315183950|gb|ADT84135.1| phage integrase [Thermococcus barophilus MP] Length = 276 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 118/229 (51%), Gaps = 18/229 (7%) Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 F++ + ++SL + +K++ ++ E +++ K SLP++L +++ Sbjct: 45 FLAVLKRSGYSNKSLNLVVQALKAYFRFE-----GLEEEAKKIKSPKVPRSLPKSLTKEE 99 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG- 192 L+ +V+ T R+ I+ LLYG GLR+SE +L ++ +S + ++G Sbjct: 100 VKKLL-SVIPPTRK-------RDRLIVLLLYGSGLRVSELCNLKINDVDFKRSLIIVRGG 151 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 KG K RIVP+ ++ K I +Y + D L R R L+P + + + Sbjct: 152 KGGKDRIVPVPGALLKEIEDYLKMRNDDSEY--LLVEERRSRKDRLSPKTVWYILNKYGK 209 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G+ T H LRHSFATH+L NG D+R IQ ILGH LSTTQIYT V Sbjct: 210 KAGI--KVTPHMLRHSFATHMLENGIDIRVIQEILGHSNLSTTQIYTKV 256 >gi|261406744|ref|YP_003242985.1| integrase family protein [Paenibacillus sp. Y412MC10] gi|261283207|gb|ACX65178.1| integrase family protein [Paenibacillus sp. Y412MC10] Length = 311 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 82/282 (29%), Positives = 137/282 (48%), Gaps = 25/282 (8%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87 +R +K T Q+Y D + FL + + I +++ ++ ++++ R G R Sbjct: 23 DREYAKDTQQAYLHDIKHFL--------NSLEGKPITEVTDIDVMYYLTQVRESGAGARY 74 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLK-KSNSLPRALNEKQALTLVDNVLLHTS 146 R S I+ F K + + K+ + + +++ K + N P L + ++D L Sbjct: 75 RNRCQSAIRLFYKVMIRFKLASTNPAMDIEKAKVEKNRQPTYLQK----PILDACL--NG 128 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 E ++ R+ I+ L+ GLR+SE + L ++ + S++ + GKG K R +PL + Sbjct: 129 IEGRY-RIRDVTIIALMAYAGLRVSEIVKLNVTDVDMENSSIGVLGKGSKWRYIPLPAEL 187 Query: 207 RKAILEYYD--LCPFDLNLN-IQLPLFRGIRGKPLNPGV----FQRYIRQLRRYLGLPLS 259 K + Y + + P N + FR K + + F Q + G LS Sbjct: 188 NKLLQMYLEERMAPRSSKDNAFFVSQFRRRISKRMVQTIAEKTFAAMTEQFPQLSGQSLS 247 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 AH LRHSFAT LL NG DLR++Q +LGH +STTQIYT+V Sbjct: 248 --AHKLRHSFATELLRNGADLRAVQELLGHEDISTTQIYTHV 287 >gi|311744114|ref|ZP_07717920.1| integrase/recombinase XerD [Aeromicrobium marinum DSM 15272] gi|311313244|gb|EFQ83155.1| integrase/recombinase XerD [Aeromicrobium marinum DSM 15272] Length = 306 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 82/310 (26%), Positives = 139/310 (44%), Gaps = 29/310 (9%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTR---QFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 ++ +L ER LS T++SY D R + L + +TI+T+R S+ + Sbjct: 14 DYEHHLTRERDLSPHTVRSYLVDVRGLAEHATRLGIHDPAAMTIRTLR--SHLATLKSLG 71 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + R +L R + ++ F +L++ + + +LP L+ Sbjct: 72 RARA------TLSRRATALRVFTAWLQRSGRADLDVGALLASPAARRTLPATLSAADMRE 125 Query: 137 LVDNVLLHTSHETKWIDA------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 ++D T ID R+ AIL LLY G+R+ E + L ++ + +R+ Sbjct: 126 VLDAA-------TAMIDGDPVTGTRDLAILELLYATGVRVGELVGLDLDDVDRSRRVVRV 178 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQ 249 GKG K R VP + A+ + + + I + G+RG ++P ++ + Sbjct: 179 LGKGRKERTVPFGLPAQDALDAWLAVGRPAVATPISGHAVLLGVRGGRIDPRTVRQVVHD 238 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 + H LRH+ ATHLL G DLRS+Q +LGH L TTQIYT+V+++ Sbjct: 239 RLGAVDGVADLGPHGLRHTAATHLLEGGADLRSVQEVLGHASLGTTQIYTHVSNER---- 294 Query: 310 MMEIYDQTHP 319 + + Q HP Sbjct: 295 LRAAFRQAHP 304 >gi|291530765|emb|CBK96350.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3] Length = 357 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 92/347 (26%), Positives = 155/347 (44%), Gaps = 51/347 (14%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAF----------YTEEKIT------IQTIR 64 +L L + S+LT +Y D R F+ FL ++E KI+ I+ + Sbjct: 21 YLNYLTTIKNRSQLTALNYYTDLRMFMRFLKVKNKLVDANEDFSEIKISDLDDKYIKAVT 80 Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNILNMRNLKKSN 123 E +F R+ + RS R ++ F K+L K S +LN+ N Sbjct: 81 LTDAMEFLSFTVSERSNQAKARS--RKAVSLRQFYKFLTNNKAWFAASPMLNLELPSPKN 138 Query: 124 SLPRALNEKQALTLVDNVLLHTSHE--TKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 +LP+ L ++ LLH + + W+D R+ A++ + CG+R+SE + + + Sbjct: 139 ALPKHLTLQEC-----GQLLHEGFKEFSSWMDYRDYAMIIMFLNCGMRLSELVGINVNDF 193 Query: 182 MD--DQS-------TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---- 228 ++ D S ++++ GKG+K RIV L A+ +Y + ++ P Sbjct: 194 VENIDPSQPDVKYLSVKVLGKGNKERIVYLNEQCVDAVTKYTEA-----RKSVADPKEKA 248 Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 LF RG + ++ I + GL + H LRH+ AT + NG D+R ++ +L Sbjct: 249 LFISKRGNRITNRRVEQIIDDRLKACGLAGKGISVHKLRHTAATLMYQNGVDVRVLKEVL 308 Query: 288 GHFRLSTTQIYTNV------NSKNGGDWMMEIYDQTHPSITQKDKKN 328 GH L+TTQIYT+V ++ N M D P + Q + KN Sbjct: 309 GHENLNTTQIYTHVVNTQLRDAINSNPVMDIKNDLPEPDLKQNEDKN 355 >gi|167037531|ref|YP_001665109.1| tyrosine recombinase XerD [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115946|ref|YP_004186105.1| tyrosine recombinase XerD [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856365|gb|ABY94773.1| tyrosine recombinase XerD [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929037|gb|ADV79722.1| tyrosine recombinase XerD [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 290 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 86/304 (28%), Positives = 145/304 (47%), Gaps = 29/304 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLA-----FYTEEKITIQTIRQLSYTEIRAFI 75 +L L + LSK TL+SY D +QFL +L +Y +K TI + L Y + Sbjct: 9 FLDFLTKNKKLSKNTLESYNRDIKQFLNYLEEIGINYYNVKKSTI--LNYLYYLK----- 61 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 K ++Q ++ R++S +K+F YL +K E + K P AL +Q Sbjct: 62 KKGKSQA----TVSRNVSSLKAFYHYLFMKKKIEEDPTYMINTPKVEKKPPTALTVEQV- 116 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 ++LL R+ A++ LLY GL++SE +SL +++ + I + + Sbjct: 117 ----DMLLSIDFGNDEKGLRDKALIELLYATGLKVSEVISLKLEDVNLSYGYVVI--RSN 170 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 K R++P+ +A+ Y + N + LF +RG+ L + IR+ + Sbjct: 171 KERVIPIGSHAIEALKNYIEKG--RKAKNGENTLFLNLRGEKLTRQGCWKIIREYTDKIN 228 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 T +TLR SFA H+L NG D+R++Q +LG+ T + TN+ S + E+Y+ Sbjct: 229 PGFPVTPNTLRQSFAQHMLQNGADIRAVQEMLGY----QTDLNTNLLSLISKSKIKEVYN 284 Query: 316 QTHP 319 + HP Sbjct: 285 KFHP 288 >gi|194716540|gb|ACF93205.1| putative transposase [Sphingobacterium sp. PM2-P1-29] Length = 279 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 76/274 (27%), Positives = 137/274 (50%), Gaps = 27/274 (9%) Query: 33 KLTLQSYECDT-RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRSLKR 90 +L +Q Y +T R + + + + + ++ ++ ++I AFI+++ + KI K Sbjct: 13 RLLMQRYAGNTIRSYKDYASIFLKHVSKYPSLEEIPLSDIEAFINEKVQNGKISVSYQKG 72 Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQALTLVDNVLLHTSHET 149 + IK + + +KI L+ K+S S LP+ ++++ ++DN Sbjct: 73 LVGAIKKMYELILDKKIQ-----LDYLYPKRSFSKLPKFFSKEEVRNILDNTQ------- 120 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRK 208 + ++ AIL +Y CGLR+SE L+L ++I +RI Q KG+K RIV L + Sbjct: 121 ---NLKHKAILMTIYSCGLRLSELLNLKIKDIKSSDGIIRIHQSKGNKDRIVSLPDKLLA 177 Query: 209 AILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 + YY P + LF G +G + Q +++ + + HTLRH Sbjct: 178 TLRHYYQAFKPKEY-------LFEGEKGGKYSERSVQLILKKALIKANVQSEGSVHTLRH 230 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 S+ATHL+ +G D+R ++ +LGH + TT IYT++ Sbjct: 231 SYATHLIQSGIDIRIVKELLGHENIKTTMIYTHI 264 >gi|167770641|ref|ZP_02442694.1| hypothetical protein ANACOL_01987 [Anaerotruncus colihominis DSM 17241] gi|167667236|gb|EDS11366.1| hypothetical protein ANACOL_01987 [Anaerotruncus colihominis DSM 17241] Length = 339 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 92/323 (28%), Positives = 157/323 (48%), Gaps = 40/323 (12%) Query: 29 RGLSKLTLQSYECDTRQFLIFLA---FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85 +G SK T+ +Y D R FL ++ Y + I Q+S +I + + K+GD Sbjct: 22 KGRSKRTVDAYYIDLRTFLRYIKCVKHYVADPDDIDAFSQVSIADIP--LETISSIKLGD 79 Query: 86 ----------------RSLKRSLSGIKSFLKYLKKRKITTESN-ILNMRNLKKSNSLPRA 128 ++ R +S ++SF YL + + N I N+ S+PR Sbjct: 80 VYQYLNYAASERENNAKTRSRKVSSLRSFFNYLTVKSGLLKINPIENLEVPSVKKSVPRY 139 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 L ++ L L+ ++ +S+E R+ I L CG+R+SE + + Q+I D T+ Sbjct: 140 LTLEECLELLTHIE-SSSYE------RDFCIATLFLNCGMRLSELVGINLQDIRGD--TI 190 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 R+ GKG+K RIV + + ++A+ Y + N+ + LF RG ++P ++ I Sbjct: 191 RLLGKGNKERIVYINDACKRALTTYLAVRMTPANVKYRDALFLSSRGTRISPRRVEQIIA 250 Query: 249 QLRRYLGLP-LSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNSKNG 306 + GL + H LRH+ AT + +GG D+R ++ ILGH LSTT+IYT+++ Sbjct: 251 RCLEQAGLAGQGYSPHKLRHTAATLMYQHGGVDIRVLKEILGHASLSTTEIYTHIS---- 306 Query: 307 GDWMMEIYDQTHP--SITQKDKK 327 D ME ++ P S+ + K+ Sbjct: 307 -DRQMEKAAKSSPLSSVAPRKKR 328 >gi|306821127|ref|ZP_07454743.1| integrase XerD [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550820|gb|EFM38795.1| integrase XerD [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 329 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 78/240 (32%), Positives = 121/240 (50%), Gaps = 22/240 (9%) Query: 87 SLKRSLSGIKSFLKYL------KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 S+KR +K FL+YL +K I ES I +K ++ +P L ++ + N Sbjct: 89 SIKRKKYVLKLFLEYLFEMEILEKTPIPKESVI--KSKIKNNSKIPTYLEIEEIQKI--N 144 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIR 198 + ++ ++I +RN I+ L GLRISE +SL +++ + T L + GKG+K R Sbjct: 145 QSIRDLYDDEFIRSRNFFIINLFLHTGLRISELVSLDFKDMEKTKKTDYLTVIGKGNKER 204 Query: 199 IVPL--------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 I+P+ L I Y D F + N LF +G L Q ++++ Sbjct: 205 IIPINVDELSKELGDEDNLIKVYLDDRKF-IKSNTD-ALFISKKGGRLTQRYIQMELKKI 262 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 Y + T H LRH+FATH L NG +LR +Q ILGH +STTQIYT+ + ++ + M Sbjct: 263 IAYSNIDKRITPHKLRHTFATHFLKNGANLRIVQEILGHSSISTTQIYTHSDKQDLVNAM 322 >gi|282878705|ref|ZP_06287473.1| phage integrase domain protein [Prevotella buccalis ATCC 35310] gi|281299096|gb|EFA91497.1| phage integrase domain protein [Prevotella buccalis ATCC 35310] Length = 292 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 77/306 (25%), Positives = 141/306 (46%), Gaps = 23/306 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L E+ S LT +SY D R F + ++ IT +++ IR ++ Sbjct: 3 EEFLNYLRFEKNRSTLTAKSYGDDLRAFERYFQGLGDQ-ITWESV---DSDIIRGWMEDM 58 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S+ R LS ++S +Y R + + L + K LP+ L E + + Sbjct: 59 MDRGNSATSICRRLSALRSLYRYSLSRGLVQVNPTLRIERPKMGKPLPQFLKESE----M 114 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D +L ++ +T + DA I+ Y G+R++E + L ++ ++ GK +K R Sbjct: 115 DELLDASTWDTSYQDALARTIIITFYETGMRLAELIGLDDVSVDFVNRQFKVLGKRNKQR 174 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPLNPGVFQRYIRQLRRY 253 +VP + + + EY + N Q+ F G +N + +++ Sbjct: 175 LVPFGDELYQVLQEYLN------QRNEQIVRKSKAFFLSRNGVRMNHNQVRYLVKKNLSL 228 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 + T H LRH+FAT +L+NG L ++Q +LGH L TT+IYT+ + + ++ Sbjct: 229 VSTLKKRTPHVLRHTFATTMLNNGAGLENVQKLLGHESLETTEIYTHTTFEQ----LKKV 284 Query: 314 YDQTHP 319 Y++ HP Sbjct: 285 YEKAHP 290 >gi|119709809|ref|YP_919149.1| phage integrase family protein [Thermofilum pendens Hrk 5] gi|119525915|gb|ABL79286.1| phage integrase family protein [Thermofilum pendens Hrk 5] Length = 278 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 65/194 (33%), Positives = 101/194 (52%), Gaps = 35/194 (18%) Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178 +KK S+P+AL + L+ A I++LL GLR+SE + Sbjct: 94 VKKPESVPKALGTEDVRKLLSVAS----------PAEREVIVFLL-KTGLRVSEFVHSRC 142 Query: 179 QNIM---DDQSTLRIQGKGDKIRIVPLLPSVRKAI-------LEYYDLCPFDLNLNIQLP 228 ++++ D + LR++GKGDK+R+VPL V + I Y P D + Sbjct: 143 EDVLVVGDGRYMLRVRGKGDKVRLVPLTKDVVEIIKARCTGRAGYIFPSPLDPD------ 196 Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288 KP++ Q + ++ R GL T HTLRH++AT LL+NG D+R+IQ++LG Sbjct: 197 -------KPVSARSIQHLVSRVARRAGLQ-RVTPHTLRHTYATLLLNNGVDIRTIQTLLG 248 Query: 289 HFRLSTTQIYTNVN 302 H +L+TTQ+YT V+ Sbjct: 249 HAQLTTTQVYTKVD 262 >gi|332884383|gb|EGK04647.1| hypothetical protein HMPREF9456_03400 [Dysgonomonas mossii DSM 22836] Length = 338 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 139/287 (48%), Gaps = 16/287 (5%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDR 86 +RG S T+ +Y QF+ F+ + I T+ QL+Y+ +R F+ + + Sbjct: 20 DRGASLRTISTYRYAFIQFIEFMETARDTNIGEITLAQLNYSNVRDFLRWLENNRHVSVS 79 Query: 87 SLKRSLSGIKSFLKYLK---KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 + + L+ +KSF ++K +T I+ +++ + L+ + L+D + + Sbjct: 80 TTNQRLAALKSFATFVKYEFPEYLTASEEIVKIKSKVNEQTTISYLSPEGMRCLLDTIDI 139 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPL 202 T R+ I+ LL+ G+R+SE +++ +++ M + I GKG+K R VP+ Sbjct: 140 -----TMQSGLRDYTIILLLFLTGIRVSELIAIKGRDVCMSSPRHIVIHGKGNKNRHVPM 194 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-PGV---FQRYIRQLRRYLG--L 256 + + +++Y L F L N+ PLFR G G+ +Y +Q +R + Sbjct: 195 VKELHAQLMKYAKLFDFTLVRNLDKPLFRNHSGDEFTRQGINYTLLKYAQQAKRKNPELI 254 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 P + H +RHS A L+ G +L I+ +LGH + T+IY ++S Sbjct: 255 PEHLSPHKIRHSTAMSLVEQGTELIIIRDLLGHRSIQATEIYAKLSS 301 >gi|255692176|ref|ZP_05415851.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] gi|299146444|ref|ZP_07039512.1| putative tyrosine recombinase [Bacteroides sp. 3_1_23] gi|260622041|gb|EEX44912.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] gi|298516935|gb|EFI40816.1| putative tyrosine recombinase [Bacteroides sp. 3_1_23] Length = 383 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 7/152 (4%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 ++ ++ L+Y GLR SE L+LTP++I+ ++ +RI GKG K R L + + YY Sbjct: 224 KHRCMISLIYSAGLRRSELLNLTPKDIISERMLIRIAGKGKKCRYSLLSEKLLNELRAYY 283 Query: 215 DLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 Q LF G + G+ +P + +++ R G+ H LRH+FATHL Sbjct: 284 R------EYRPQKWLFEGEQSGEQYSPSALVKVLKEAARKAGIKHRVHLHMLRHTFATHL 337 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 L G DLR+IQ ++GH + TT IY +V++ + Sbjct: 338 LEQGTDLRTIQELMGHTDIKTTAIYLHVSNAH 369 >gi|56416387|ref|YP_153461.1| integrase/recombinase [Anaplasma marginale str. St. Maries] gi|56387619|gb|AAV86206.1| integrase/recombinase [Anaplasma marginale str. St. Maries] Length = 312 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 87/312 (27%), Positives = 138/312 (44%), Gaps = 29/312 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L++L R +S T SY D FL + S ++RA++ + Sbjct: 10 FLESLLSGRCVSPNTSSSYRSDLEDLAEFLGRRNLRMV------DASAADLRAYVRSLNS 63 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + ++ R +S I+ +L +I N+ + K LP+ L + VD Sbjct: 64 RGYSPATVARRISAIRGLYGFLYGDRIIDGDPAANLDSCKLGRPLPKVLTVDE----VDK 119 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-------MDDQSTLRIQGK 193 +L + R +AI+ +LY G+RISE ++L +I D L I+GK Sbjct: 120 LLCAAGSDLSVEGRRTAAIVNILYSSGVRISELINLGFYDIESMLKEQRSDVGHLVIKGK 179 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRR 252 + R++ L +I+ Y L D + Q R + G + + ++ + QL + Sbjct: 180 AGRERLILLNEVAIASIVAY--LAVRDHFIVGQKSESRWLFPGAKFDQCISRQRVGQLLK 237 Query: 253 YLGL-----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 L + P + H LRHSFATHLL+NG ++ IQ +LGH LSTTQIYT V Sbjct: 238 ALAIVAGVDPKRISPHKLRHSFATHLLNNGSNVVFIQKMLGHASLSTTQIYTYV----AN 293 Query: 308 DWMMEIYDQTHP 319 D + E HP Sbjct: 294 DRLKEALQTFHP 305 >gi|189460668|ref|ZP_03009453.1| hypothetical protein BACCOP_01310 [Bacteroides coprocola DSM 17136] gi|189432627|gb|EDV01612.1| hypothetical protein BACCOP_01310 [Bacteroides coprocola DSM 17136] Length = 296 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 82/303 (27%), Positives = 148/303 (48%), Gaps = 15/303 (4%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 + ++L+ L+ E+ S T+ SY D +F + F T ++ T+ + IR ++ Sbjct: 6 KDSFLKYLQFEKNYSDKTIVSYGIDLEKFEEY--FKTVDECLDFTVVDVDL--IRGWVLS 61 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 + S+ R LS ++SF +YL ++ + + + + KK LP + E L Sbjct: 62 LMEEGYTATSVNRKLSSLRSFYRYLLRQGVVSVDPLQKVVGPKKKKPLPVFVKEADMSRL 121 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 +D TS E R+ IL + Y G+R+SE + LT ++ +++ GK +K Sbjct: 122 LDEADFGTSFEG----VRDKVILEVFYETGVRLSELVGLTDADVDLSLKQIKVTGKRNKQ 177 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG-VFQRYIRQLRRYLGL 256 R +P ++ + Y + + RG GKP+ PG V+ R L + + L Sbjct: 178 RFIPFGDKLKSDLNAYLSVREERFPGGGEAFFLRG-NGKPIYPGLVYLLVKRNLSKVVSL 236 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LRHSFAT +L+N +L +++ +LGH L+TT++YT+ + + ++Y+Q Sbjct: 237 K-KKSPHVLRHSFATSMLNNHAELGAVKELLGHESLTTTEVYTHTTFEE----LKKVYEQ 291 Query: 317 THP 319 HP Sbjct: 292 AHP 294 >gi|313887029|ref|ZP_07820729.1| site-specific recombinase, phage integrase family [Porphyromonas asaccharolytica PR426713P-I] gi|312923555|gb|EFR34364.1| site-specific recombinase, phage integrase family [Porphyromonas asaccharolytica PR426713P-I] Length = 304 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 76/274 (27%), Positives = 137/274 (50%), Gaps = 27/274 (9%) Query: 33 KLTLQSYECDT-RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRSLKR 90 +L +Q Y +T R + + + + + ++ ++ ++I AFI+++ + KI K Sbjct: 38 RLLMQRYAGNTIRSYKDYASIFLKHVSKYPSLEEIPLSDIEAFINEKVQNGKISVSYQKG 97 Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQALTLVDNVLLHTSHET 149 + IK + + +KI L+ K+S S LP+ ++++ ++DN Sbjct: 98 LVGAIKKMYELILDKKIQ-----LDYLYPKRSFSKLPKFFSKEEVRNILDNTQ------- 145 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRK 208 + ++ AIL +Y CGLR+SE L+L ++I +RI Q KG+K RIV L + Sbjct: 146 ---NLKHKAILMTIYSCGLRLSELLNLKIKDIKSSDGIIRIHQSKGNKDRIVSLPDKLLA 202 Query: 209 AILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 + YY P + LF G +G + Q +++ + + HTLRH Sbjct: 203 TLRHYYQAFKPKEY-------LFEGEKGGKYSERSVQLILKKALIKANVQSEGSVHTLRH 255 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 S+ATHL+ +G D+R ++ +LGH + TT IYT++ Sbjct: 256 SYATHLIQSGIDIRIVKELLGHENIKTTMIYTHI 289 >gi|222474757|ref|YP_002563172.1| Tyrosine recombinase (xerD) [Anaplasma marginale str. Florida] gi|255003855|ref|ZP_05278656.1| Tyrosine recombinase (xerD) [Anaplasma marginale str. Virginia] gi|222418893|gb|ACM48916.1| Tyrosine recombinase (xerD) [Anaplasma marginale str. Florida] Length = 312 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 87/312 (27%), Positives = 138/312 (44%), Gaps = 29/312 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L++L R +S T SY D FL + S ++RA++ + Sbjct: 10 FLESLLSGRCVSPNTSSSYRSDLENLAEFLGRRNLRMV------DASAADLRAYVRSLNS 63 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + ++ R +S I+ +L +I N+ + K LP+ L + VD Sbjct: 64 RGYSPATVARRISAIRGLYGFLYGDRIIDGDPAANLDSCKLGRPLPKVLTVDE----VDK 119 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-------MDDQSTLRIQGK 193 +L + R +AI+ +LY G+RISE ++L +I D L I+GK Sbjct: 120 LLCAAGSDLSVEGRRTAAIVNILYSSGVRISELINLGFYDIESMLKEQRSDVGHLVIKGK 179 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRR 252 + R++ L +I+ Y L D + Q R + G + + ++ + QL + Sbjct: 180 AGRERLILLNEVAIASIVAY--LAVRDHFIVGQKSESRWLFPGAKFDQCISRQRVGQLLK 237 Query: 253 YLGL-----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 L + P + H LRHSFATHLL+NG ++ IQ +LGH LSTTQIYT V Sbjct: 238 ALAIVAGVDPKRISPHKLRHSFATHLLNNGSNVVFIQKMLGHASLSTTQIYTYV----AN 293 Query: 308 DWMMEIYDQTHP 319 D + E HP Sbjct: 294 DRLKEALQTFHP 305 >gi|330832570|ref|YP_004401395.1| integrase family protein [Streptococcus suis ST3] gi|329306793|gb|AEB81209.1| integrase family protein [Streptococcus suis ST3] Length = 298 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 83/300 (27%), Positives = 144/300 (48%), Gaps = 27/300 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q +L I+R LS T+++Y+ D Q+ F +IR++++ Sbjct: 7 QRYLDFCAIQRRLSSHTIRAYKSDLHQYYNF-----------------GTNDIRSYLTFL 49 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPR--ALNEKQAL 135 +LKR ++ +KS+ K+L++ K+ +++ +R + K+ LP+ +L + Q + Sbjct: 50 NQHIKKTSTLKRKIASLKSYYKFLEEEKLISKNPFHQLRLHYKEEKKLPKTISLKDLQKI 109 Query: 136 TLVDNVLLHTSHETKWI--DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 + + S + RN ++ LL GLRISE +L NI + T++I GK Sbjct: 110 YCFAHQQIENSKNKHSMRKAMRNLLLISLLLSTGLRISELCNLKLDNINLENRTIQILGK 169 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRR 252 G K R++ + ++LE Y + + LF G++ L + ++ + Sbjct: 170 GKKERLLYIGNDETLSLLEDY----IAHHCSHSSYLFTGVKNDDHLKEPSVRLILKNISH 225 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 L L T H RHSFAT LL NG D+R IQ +LGH ++ TQIYT+V+ + + E Sbjct: 226 SLQLKKHITPHMFRHSFATMLLDNGVDIRQIQHLLGHSNINVTQIYTHVSQSKQVEILSE 285 >gi|300872285|gb|ADK38970.1| IntI4 [Vibrio sp. V87(2010)] Length = 290 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 38/188 (20%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206 +D ++ + LLYG GLR+ E + L Q+I D +RI QGKG K R V L P + Sbjct: 95 VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 154 Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233 ++ I YYD P++ + P F+ + Sbjct: 155 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 214 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R +N V Q+ +R+ + G+ + T HTLRHSFAT+LL G D+R++ +LGH + Sbjct: 215 RRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATNLLEVGADIRTVHELLGHTDVK 274 Query: 294 TTQIYTNV 301 TTQIYT+V Sbjct: 275 TTQIYTHV 282 >gi|28371755|gb|AAO38263.1| tyrosine recombinase IntIA [Vibrio natriegens] Length = 320 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/188 (32%), Positives = 85/188 (45%), Gaps = 38/188 (20%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI 210 ID + LLYG GLR+ E L L Q+I D +R+ QGKG K R V L + ++ Sbjct: 118 IDPKYKLQTLLLYGSGLRLMECLRLRIQDIDYDYGAIRVWQGKGGKNRTVTLAKELHSSL 177 Query: 211 LEYYDLCPFDLNLNIQLPLFRGI------------------------------------- 233 DL + +P + G+ Sbjct: 178 KAQVDLARSYYQKDCHMPGYAGVYISEGLQRKYPNAQLDFNWHFLFPSAKLSVDPEMGEL 237 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R +N QR +++ + G+ S T HTLRHSFATHLL +G D+R++Q LGH + Sbjct: 238 RRHHINESALQRAVKRSAKDAGIEKSVTCHTLRHSFATHLLESGADIRTVQEQLGHSDVK 297 Query: 294 TTQIYTNV 301 TTQIYT+V Sbjct: 298 TTQIYTHV 305 >gi|256751764|ref|ZP_05492637.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1] gi|256749292|gb|EEU62323.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1] Length = 307 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 71/294 (24%), Positives = 143/294 (48%), Gaps = 14/294 (4%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD-RS 87 + LS +++ Y+ D ++F ++ T++ I I+ ++ I+++ + +K + + Sbjct: 17 KNLSPVSINGYQRDLQEFYNWI---TQQGIL--NIQDITPHHIKSYFMHLKNEKNNNPVT 71 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 L L+ +++F Y+ + KI E+ + + +K++ A ++Q ++ Sbjct: 72 LNHKLTNLRAFFNYMVQEKILKETPVKIEK--QKTDVKIEAFTDEQVYQMLRYFRKLKQR 129 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207 E + RN I+ G G+R+SE ++L ++I + + GK K R +PL +R Sbjct: 130 EKTFYAYRNYLIILTFLGTGIRLSEIVNLKWRDIDLINDKITVYGKSRKQRTIPLQERLR 189 Query: 208 KAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTL 265 + EYY C ++N +F IR K L+ R+L++ +G + HT Sbjct: 190 EEFKEYYAFCKKNNINFTDDDYVFTDIRKKQLSKNAIHLVFRRLKKVMGWKNVKLAPHTF 249 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 RH+FA + + +GGD+ S+Q +LGH + T Y ++ G + E D+ +P Sbjct: 250 RHTFAKNWILSGGDVFSLQRVLGHQSIEMTNRYVSL----FGSALKEQNDKYNP 299 >gi|288926256|ref|ZP_06420181.1| tyrosine recombinase XerD [Prevotella buccae D17] gi|288336947|gb|EFC75308.1| tyrosine recombinase XerD [Prevotella buccae D17] Length = 293 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 80/302 (26%), Positives = 135/302 (44%), Gaps = 15/302 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L+ E S+ T++SY D R F F + + IR ++ Sbjct: 4 EKFLNYLKFELNRSERTVKSYGEDLRAFEEFFKNLDGH----PSWESVDSDIIRDWMESM 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S+ R LS ++SF ++ R++ + ++ KK LP+ L E + L+ Sbjct: 60 MDKGNNATSINRRLSALRSFYRFALARELVVKDPAHDVVGPKKKKPLPQFLKENEINALL 119 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D+ + E + D R I+ Y G+R+SE L ++ L++ GK +K R Sbjct: 120 DSDMW----EDTYDDMRARTIVMTFYETGMRLSELTGLRDADVDFVNHELKVTGKRNKQR 175 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIRQLRRYLGLP 257 I+P + + +Y L N F +G + N V + + L R L Sbjct: 176 IIPFGAELAHTLADYKSLRDATERGNCG-KFFLTDKGLAMQNAQVREIVKKHLSRVCTLK 234 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T H LRH+FAT +L++ L S++ +LGH RLSTT+IYT+ + + +Y Sbjct: 235 -KRTPHVLRHTFATAMLNHEAGLESLKRLLGHARLSTTEIYTHTTFEQ----LKRVYTNA 289 Query: 318 HP 319 HP Sbjct: 290 HP 291 >gi|282858397|ref|ZP_06267577.1| phage integrase, N-terminal SAM domain protein [Prevotella bivia JCVIHMP010] gi|282588845|gb|EFB93970.1| phage integrase, N-terminal SAM domain protein [Prevotella bivia JCVIHMP010] Length = 290 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 71/299 (23%), Positives = 141/299 (47%), Gaps = 15/299 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L +E+G S T+ +Y D + F F + +E ++ ++I +R ++ Sbjct: 5 FLDYLRLEKGYSLKTIDNYRDDLKGFERFYKNF-DETLSWESIDS---DIVRNWVEFMMD 60 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 K S+ R LS ++S +Y K + + ++ KK SLP+ + E + L+ + Sbjct: 61 NKAAAASVNRRLSALRSLYRYSLKHGFVEKDPVYGIQGPKKPKSLPQFVKESELDQLLQD 120 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + +++ D ++ +LY G+R+ E + L ++ S++++ GK +K R++ Sbjct: 121 EMWADTYQ----DLLARTLIVVLYETGMRLGEIVGLNLNSVDFHTSSVKVTGKRNKQRVI 176 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 P + ++ Y + + F +G+ +N + +++ + Sbjct: 177 PFGEELESSLKAYLGKRK---AIAGEEAFFTTEKGERVNDYQVRDLVKKNLSKVSTLKKR 233 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T H LRHSFAT +L++ L S++ +LGH LSTT+IYT+ + + IY HP Sbjct: 234 TPHVLRHSFATAMLNHNAGLESVRKLLGHESLSTTEIYTHTTFEQ----LKRIYKNAHP 288 >gi|226314997|ref|YP_002774893.1| hypothetical protein BBR47_54120 [Brevibacillus brevis NBRC 100599] gi|226097947|dbj|BAH46389.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 290 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 79/276 (28%), Positives = 130/276 (47%), Gaps = 20/276 (7%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT-IRQLSYTEIRAFISKRRTQKI-GDRS 87 G S+ T+ Y+ D F FL E K + I ++ T+I F+ +T++ S Sbjct: 21 GRSEQTITGYKKDLSYFTRFL----ERKYNCEPYIDEVLVTDIEDFLLYLKTERAYAPAS 76 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 +R+L +SF Y +K++ + + L++ +K L E + VD ++ H Sbjct: 77 RQRNLHTFRSFFAYAQKKEWVSRNIALSVEKIKVQQKERTYLEEAE----VDELVSEIDH 132 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206 + ++ +LY G+RISE L+L + DQ + + GKG+K R +P+ P + Sbjct: 133 PLIRL------VVMVLYMTGMRISECLNLKVDEVKWDQQVIHVVAGKGNKDRFIPISPRL 186 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 + EY D + N F + L+P R I + + LG TAH LR Sbjct: 187 LPMLKEYVLHHRPDSDSN---RFFCTKKTGKLSPVYVNREITEAVKRLGWSKKVTAHILR 243 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 HSFA+ L+ +L IQ +LGH L+ T +YT+ N Sbjct: 244 HSFASQLVKKDVNLVQIQKLLGHSSLNVTSVYTHTN 279 >gi|58696879|ref|ZP_00372392.1| tyrosine recombinase XerD [Wolbachia endosymbiont of Drosophila simulans] gi|225630697|ref|YP_002727488.1| site-specific recombinase, phage integrase family [Wolbachia sp. wRi] gi|58536905|gb|EAL60089.1| tyrosine recombinase XerD [Wolbachia endosymbiont of Drosophila simulans] gi|225592678|gb|ACN95697.1| site-specific recombinase, phage integrase family [Wolbachia sp. wRi] Length = 328 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 101/334 (30%), Positives = 163/334 (48%), Gaps = 39/334 (11%) Query: 16 KERQNWLQNLEI---------ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66 K+ QN +NL I ER ++ TL+SY D QF FL E T+ + + Sbjct: 4 KQSQNKKENLYITYYIDALASERFAAQNTLESYRSDLHQFEEFL---LESGTTLVGVNK- 59 Query: 67 SYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKIT----TESNILNMRNLKK 121 T I+ ++ TQK S+ R +S +K+F K L I +N ++N K Sbjct: 60 --TNIKDYVKSLCTQKKYKSSSISRKISAMKNFYKCLFNDGIIDFNPAPANDAELKNPKV 117 Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQN 180 S LP+ L+ ++ L+D V S K I + R AIL +LY G+R+SE +S+ Sbjct: 118 SRPLPKYLSVEEIFLLMDTVRKSASESNKEISSKRLCAILDILYSSGMRVSELISMKLCE 177 Query: 181 IM------DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGI 233 + + + + I+GK + R + +++ Y + ++ + LF G Sbjct: 178 VSHLINSNNKECYIIIKGKSGRERQILFNEQALQSLRNYLSVRDNLISKEKESDWLFPG- 236 Query: 234 RGKPLNPGVFQRY---IRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGH 289 KP P QR +++L R + + + H +RHSFATHLL++G ++ IQ +LGH Sbjct: 237 -DKPNKPITRQRVGQLMKELARKCNIDENKISPHVIRHSFATHLLNSGANIVLIQKVLGH 295 Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323 LSTTQIYT++ ++ D + + +HP ITQ Sbjct: 296 TNLSTTQIYTHIANEKLKDKLAD----SHP-ITQ 324 >gi|325953803|ref|YP_004237463.1| integrase [Weeksella virosa DSM 16922] gi|323436421|gb|ADX66885.1| integrase family protein [Weeksella virosa DSM 16922] Length = 355 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 82/303 (27%), Positives = 145/303 (47%), Gaps = 38/303 (12%) Query: 11 SFELLKERQNWLQNLEIERGLSKLTLQSYECDT-----RQFLIFLAFYTEEKITIQTIRQ 65 ++E + E + + + ++ ++ LTL+SY +T +FL FL F+ + + Sbjct: 67 NYEHITENIHPIHHHAFKQFINYLTLKSYSNNTIKTYRTEFLSFLNFFDD-----VAVEN 121 Query: 66 LSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 L+ +++A+ TQ K+ + ++ ++ +K + ++ + E ++ KK Sbjct: 122 LTPDQLQAYFLVCATQHKLSEATINSRMNAVK----FYYEKVLKYERMFFDIPRPKKPLQ 177 Query: 125 LPRALNEKQAL---TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 LP+ LN K+ L ++ DN+ ++ IL L YG GLR+SE L +I Sbjct: 178 LPKTLNRKEILLLFSVTDNL-------------KHLMILKLCYGMGLRVSELAKLKIIDI 224 Query: 182 MDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240 T+RI+ GKG K R V L S+ + + YY + LF G G ++ Sbjct: 225 DSQTMTVRIERGKGKKDRFVTLPQSILEDLRLYY------VTYRPSYFLFEGRGGSEIST 278 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 Q+ + + + H+LRHS+ATHLL G D+ IQ +LGH + TT YT+ Sbjct: 279 RTIQKVFKDAMHKAKIQKNVGIHSLRHSYATHLLELGTDISHIQKLLGHESIKTTLSYTH 338 Query: 301 VNS 303 V++ Sbjct: 339 VSN 341 >gi|253578208|ref|ZP_04855480.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850526|gb|EES78484.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 317 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 74/305 (24%), Positives = 146/305 (47%), Gaps = 23/305 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L+ + L + T+++Y D Q+ F+A +K +I +I++ Sbjct: 21 SYLEYCTYRKELDQKTVKAYRIDLNQYFTFVACEEPDK-----------EKIEEYITELH 69 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTLV 138 +K +++KR ++ +K++ YL++ ++ ES ++ K++ LPR + ++ L+ Sbjct: 70 -KKYKQKTVKRKIASVKAYYSYLEENELIKESPFRKIKVKFKENLILPRIIPREEIEHLL 128 Query: 139 DNV--LLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 +++ L + ET + R+ A++ L + G R+ E ++ +N+ + +++ GKG Sbjct: 129 NHMYGCLQQASETVYKYCLRDVAVIELFFATGARVYEISNIRAENVNLNTGLIQLMGKGA 188 Query: 196 KIRIVPL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 K R V + SV + +YY + F RG + +++ Sbjct: 189 KERYVQIGSTSVLNILRKYY--AENRAAIKKSGYFFVNGRGNRYTEQSIRLMLKKYTAQA 246 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ + T H RHSFAT+L+ G D+ +Q ILGH + TTQIY +V ++ EI Sbjct: 247 GIERNITPHMFRHSFATYLIEEGVDISCVQRILGHSSIKTTQIYIHVAARKQA----EIL 302 Query: 315 DQTHP 319 HP Sbjct: 303 RDMHP 307 >gi|27497173|gb|AAN64203.1| Int [Photorhabdus luminescens] Length = 465 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 91/338 (26%), Positives = 159/338 (47%), Gaps = 27/338 (7%) Query: 2 EGNNLPEIVSFELLKERQN---WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI 58 E + P+ + RQ+ WL+ ++ + GLS+ T +SYE + L F+ + E Sbjct: 129 ETHGQPDAIPARFATLRQHLAAWLEAVQGQ-GLSERTQESYE---ERLLPFVTWC--EAR 182 Query: 59 TIQTIRQLSYTEIRAFI----SKRRT--QKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112 + T Q+S + ++ S R+T Q S + LS ++ + ++L +R + Sbjct: 183 GVMTAPQVSLPLLESYQRWLRSYRKTNGQPYSPGSQRDRLSVLRQWFRWLLQRHHILYNP 242 Query: 113 ILNMRNLKKSNSLP-RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171 + ++ K+ LP + +NE + T++ + T RN IL +L+ G+R Sbjct: 243 VDSLVLPKEEKRLPAQVMNEDETHTVLAAANIDTL-----TGLRNRVILEVLWSTGIRRM 297 Query: 172 EALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230 E +L + + + + QGKG+K R+VP+ + + + P LF Sbjct: 298 EVANLLLSEVDFGRGVVLVRQGKGNKDRVVPIGEQALHWLSRWLSVRPQLTRRGDSGHLF 357 Query: 231 RGIRGKPLNPGVF-QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289 +G+ L G Q +R+ L H RHS AT +L NG D R IQ+ILGH Sbjct: 358 ITRKGRGLARGTLTQIAADSIRKQAQLAKPGACHLFRHSMATQMLENGADTRHIQAILGH 417 Query: 290 FRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327 +L TTQIYT V + + ++++QTHP+ + ++K Sbjct: 418 EKLETTQIYTRVAIGH----LKKVHEQTHPAERKPEQK 451 >gi|261880904|ref|ZP_06007331.1| tyrosine recombinase XerD [Prevotella bergensis DSM 17361] gi|270332412|gb|EFA43198.1| tyrosine recombinase XerD [Prevotella bergensis DSM 17361] Length = 292 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 74/306 (24%), Positives = 139/306 (45%), Gaps = 23/306 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L+ E S LT++SY D + F +F QLS+ + + + + Sbjct: 3 EKFLNYLQFELCRSPLTVESYRRDLQAFEVFFRNLNG---------QLSWESVDSDVIRD 53 Query: 79 RTQKIGDR-----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 + + DR S+ R LS ++S ++ ++ + KK LP+ L E + Sbjct: 54 WMEGMMDRGNNAASVNRRLSALRSLYRFALSHQLVARDPARCIDGPKKQKPLPQFLKENE 113 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L+D++ + ++ D R I+ Y G+R+SE + L ++ L++ GK Sbjct: 114 MDRLLDDMEWGSGYK----DVRAKTIITTFYETGIRLSELVGLDDESADFHNHQLKVTGK 169 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 G+K RI+P + K + + + ++ LF G + ++ ++ Sbjct: 170 GNKQRIIPFGDELEKTLRWFVETRNREVERTGN-ALFVTEEGVRMTSQQVRQEVKARLAQ 228 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 + T H LRH+FAT +L++G L S++ +LGH +STT+IYT+ + + + Sbjct: 229 VCTLKKLTPHVLRHTFATTMLNHGAGLESVKRLLGHESVSTTEIYTHTTFEQ----LKQA 284 Query: 314 YDQTHP 319 Y HP Sbjct: 285 YKDAHP 290 >gi|53712683|ref|YP_098675.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|52215548|dbj|BAD48141.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] Length = 383 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 94/190 (49%), Gaps = 23/190 (12%) Query: 120 KKSNSLPRALNE---KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 K+ SLP L++ K+ L + N+ H ++ L+Y GLR SE L+L Sbjct: 199 KEYKSLPEVLSKNEIKRILAQISNIKHH-------------CMISLVYSAGLRRSELLNL 245 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-IRG 235 TPQ+I + ++RI GKG K R L P + + + Y+ Q LF G G Sbjct: 246 TPQDINSETMSVRIMGKGKKCRYSLLSPKLLEELRHYFR------EYRPQKWLFEGETPG 299 Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 + + + +++ G+ H LRHSFATHLL G DL +IQ +LGH + TT Sbjct: 300 EQYSASALVKVLKEAAHRAGIKHRVHVHMLRHSFATHLLEQGTDLHTIQELLGHNDIKTT 359 Query: 296 QIYTNVNSKN 305 IY +V+S + Sbjct: 360 TIYLHVSSAH 369 >gi|315608575|ref|ZP_07883559.1| integrase/recombinase [Prevotella buccae ATCC 33574] gi|315249746|gb|EFU29751.1| integrase/recombinase [Prevotella buccae ATCC 33574] Length = 343 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 92/306 (30%), Positives = 147/306 (48%), Gaps = 22/306 (7%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTE-EKITIQTI--RQLSYTEIRAFISKRRTQ-KI 83 ERG+S TL+SY F + L + E +KI + I + L+ F+ +T+ K Sbjct: 22 ERGVSHHTLRSY---AYTFDLMLDYMLEVKKIPAERIELKHLTRDCTTGFLDWLQTERKC 78 Query: 84 GDRSLKRSLSGIKSFLKYLKK---RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 D + L+ I +F KYL+ ++I I+ ++ K + +L+ + TL+ Sbjct: 79 TDNTRNARLAAIHAFCKYLQYEDIKRIGCWQQIMTIKAKHKVSGTISSLSIEAMKTLLAE 138 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRI 199 + T R+ AIL LLY G R+ E ++LTP ++ ++ + + + GKG K R+ Sbjct: 139 IPTDTMQ-----GRRHLAILSLLYESGARVQELINLTPNDLSLELPAYVTLFGKGRKKRV 193 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQ---RYIRQLR-RYL 254 VPL + + Y DL + LF RG L N G+ Y +R ++ Sbjct: 194 VPLQKRLVSIMRLYLAEHKLDLPGREKRHLFYNNRGAKLSNSGIAHIITLYANDVRVKHP 253 Query: 255 GL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 GL P + H+ RHS A HLL G +L I+ ILGH + TT+IY + +SK D + + Sbjct: 254 GLLPDKISPHSFRHSKAMHLLQAGVNLVYIRDILGHASIKTTEIYAHADSKQKRDALEKA 313 Query: 314 YDQTHP 319 Y P Sbjct: 314 YANITP 319 >gi|254478707|ref|ZP_05092078.1| tyrosine recombinase XerD [Carboxydibrachium pacificum DSM 12653] gi|214035394|gb|EEB76097.1| tyrosine recombinase XerD [Carboxydibrachium pacificum DSM 12653] Length = 290 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 82/301 (27%), Positives = 140/301 (46%), Gaps = 23/301 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ L+ + LSK TL+SY D QFL ++ E I + ++ + F+ + Sbjct: 9 FLEFLKKNKRLSKNTLESYSRDVEQFLTYM---NEHGINFCSAKKSTIVNYLYFL---KQ 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q ++ R+LS IK+F YL +K E + K P L +Q + Sbjct: 63 QGKSQATISRALSSIKAFYHYLFAKKKIEEDPSYGINAPKVEKKEPVTLTVEQV-----D 117 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 +LL R+ A++ L+Y GL++SE +SL +++ + ++ I + K R++ Sbjct: 118 MLLSFDFGKDEKGLRDKALIELMYASGLKVSEVISLKIEDV--NLASGYIVVRSGKERVI 175 Query: 201 PLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 P+ A+ EY + P + LF +RGK L + I++ + L Sbjct: 176 PIGSYAVAALQEYIEKGRKP----RKGEKALFLNLRGKRLTRQGCWKIIKEYADKISPGL 231 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 S T + LR SFA H+L NG DL+++Q +LG+ N+ S M E+Y++ H Sbjct: 232 SLTPNILRKSFAQHMLQNGADLKTVQEMLGY----EANFGNNLLSLVSRSKMKEVYNKFH 287 Query: 319 P 319 P Sbjct: 288 P 288 >gi|167752616|ref|ZP_02424743.1| hypothetical protein ALIPUT_00870 [Alistipes putredinis DSM 17216] gi|167659685|gb|EDS03815.1| hypothetical protein ALIPUT_00870 [Alistipes putredinis DSM 17216] Length = 368 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 94/190 (49%), Gaps = 23/190 (12%) Query: 120 KKSNSLPRALNE---KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 K+ SLP L++ K+ L + N+ H ++ L+Y GLR SE L+L Sbjct: 184 KEYKSLPEVLSKNEIKRILAQISNIKHH-------------CMISLVYSAGLRRSELLNL 230 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-IRG 235 TPQ+I + ++RI GKG K R L P + + + Y+ Q LF G G Sbjct: 231 TPQDINSETMSVRIMGKGKKCRYSLLSPKLLEELRHYFR------EYRPQKWLFEGETPG 284 Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 + + + +++ G+ H LRHSFATHLL G DL +IQ +LGH + TT Sbjct: 285 EQYSASALVKVLKEAAHRAGIKHRVHVHMLRHSFATHLLEQGTDLHTIQELLGHNDIKTT 344 Query: 296 QIYTNVNSKN 305 IY +V+S + Sbjct: 345 TIYLHVSSAH 354 >gi|298206637|ref|YP_003714816.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559] gi|83849267|gb|EAP87135.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559] Length = 265 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 88/280 (31%), Positives = 133/280 (47%), Gaps = 30/280 (10%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87 E+ L++ T+ Y TR FL +L+ ++IT +++ +Y I G Sbjct: 3 EKRLAQNTIDIYTEVTRIFLRYLSLKQADEITNIWVQRFNYDYIIG-------NGFGVAY 55 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 + ++GIK F+ +L K + + + KK LP L+ K+ ++ + NV+ + H Sbjct: 56 QNQCINGIKKFVSFLGKPLV-----LDTLVRPKKPQKLPVVLS-KEEISQLFNVINNLKH 109 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206 + Y GLRI EAL LTP+ I + +RI Q KG+K R L S Sbjct: 110 KALLALL---------YSAGLRIGEALQLTPEAIDSKRMLIRIEQAKGNKDRYTLLSESF 160 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTL 265 L + + LF G G Q+ +++ R G+ + T HTL Sbjct: 161 LTL------LRMYYKKYKPKTYLFEGQNGGAYTSSSAQKVLKRALRDAGITRIGVTLHTL 214 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 RHSFATHLL +G DLR IQ +LGH TT IYT+V+SK+ Sbjct: 215 RHSFATHLLESGTDLRYIQELLGHNSPKTTMIYTHVSSKS 254 >gi|224025068|ref|ZP_03643434.1| hypothetical protein BACCOPRO_01802 [Bacteroides coprophilus DSM 18228] gi|298377207|ref|ZP_06987161.1| integrase [Bacteroides sp. 3_1_19] gi|224018304|gb|EEF76302.1| hypothetical protein BACCOPRO_01802 [Bacteroides coprophilus DSM 18228] gi|298266191|gb|EFI07850.1| integrase [Bacteroides sp. 3_1_19] Length = 340 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 82/292 (28%), Positives = 145/292 (49%), Gaps = 18/292 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAF-YTEEKITIQTI--RQLSYTEIRAFISK-RRT 80 L +E G S T++ Y F++F+ + Y E I + + ++++ + F+ T Sbjct: 16 LTMECGCSYQTVKQYSAT---FMLFIQYMYKIELIAPEKLFLKEITKERVLGFLHWLEET 72 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD- 139 +K + LS ++SF KYL+ R++ + + ++K+ + E LT Sbjct: 73 RKCSISTRNNRLSALRSFFKYLQYREVKGMAYWQAILSIKQKRT---PFKEMSYLTTEGV 129 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIR 198 LL + R+ ++ LLY G R+ E ++LTP+NI + + +T+++ GKG+KIR Sbjct: 130 QALLEQPDLSTRKGRRDFILMGLLYDSGARVQEIINLTPENIRLGETTTVKLHGKGNKIR 189 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP----GVFQRYIRQLRR-Y 253 +VPL + K + Y + + PLF +G+ L + +R+ + R+ Y Sbjct: 190 VVPLSTNQVKNLRLYMEENNLFASQYRCHPLFPNPKGERLTRMAVLDIVKRHAKNARKQY 249 Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 L L P + + HT RHS A H+L G +L I+ LGH +TT+IY + K Sbjct: 250 LELIPSNISCHTFRHSKAMHMLEAGINLVYIRDFLGHASTTTTEIYARASEK 301 >gi|262173546|ref|ZP_06041223.1| integron integrase IntI4 [Vibrio mimicus MB-451] gi|261890904|gb|EEY36891.1| integron integrase IntI4 [Vibrio mimicus MB-451] Length = 320 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 64/188 (34%), Positives = 89/188 (47%), Gaps = 38/188 (20%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206 +D + LLYG GLR+ E + L Q+I D +RI QGKG K R V L P + Sbjct: 118 VDPKYQLPAKLLYGSGLRLMECIRLRIQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 177 Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233 ++ I YYD P++ + P F+ + Sbjct: 178 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 237 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R +N V QR +R+ + G+ + T HTLRHSFATHLL G D+R++Q LGH + Sbjct: 238 RRHHMNETVLQRTVRKSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVK 297 Query: 294 TTQIYTNV 301 TTQIY +V Sbjct: 298 TTQIYAHV 305 >gi|254225618|ref|ZP_04919226.1| site-specific recombinase IntI4 [Vibrio cholerae V51] gi|125621833|gb|EAZ50159.1| site-specific recombinase IntI4 [Vibrio cholerae V51] Length = 320 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 91/188 (48%), Gaps = 38/188 (20%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206 +D ++ + LLYG GLR+ E + L Q+I D +RI QGKG K R V L P + Sbjct: 118 VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 177 Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233 ++ I YYD P++ + P F+ + Sbjct: 178 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 237 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R +N V Q+ +R+ + + + T HTLRHSFATHLL G D+R++Q LGH + Sbjct: 238 RRHHINETVLQKAVRRSAQEARIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHSDVK 297 Query: 294 TTQIYTNV 301 TTQIYT+V Sbjct: 298 TTQIYTHV 305 >gi|257080952|ref|ZP_05575313.1| prophage lambdaba03 [Enterococcus faecalis E1Sol] gi|256988982|gb|EEU76284.1| prophage lambdaba03 [Enterococcus faecalis E1Sol] Length = 301 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 71/276 (25%), Positives = 133/276 (48%), Gaps = 18/276 (6%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 +G SK+T+++Y+ R F E Q+ I+++I + +++ ++ Sbjct: 17 KGFSKITIKNYKSKLRNTANFFKSINVEP------SQIEKKHIKSWIIDMQEKEMQASTI 70 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE---KQALTLVDNVLLHT 145 S+S +K Y+ K + +++ LK+ + LN+ KQ LT+ Sbjct: 71 NVSVSRLKKLFDYMLIEKYIEYNPFVDIERLKEQRKVIYPLNDYEIKQMLTVA------K 124 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 H K I RN IL L+ CGLRISE + ++IM++Q +R + K +K R V + P Sbjct: 125 KHPYKHIAQRNVVILMLMIECGLRISEVCEIRDEDIMNNQIIIR-KSKNNKDRAVAVSPI 183 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAH 263 ++K I++Y+ + L GK LN + ++++++ + + + + H Sbjct: 184 LKKEIIKYHRIKKRKYGLLEGNTFIVSNLGKKLNEKSIWQIMQEIKKQIDIRDCVRFSGH 243 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 TLRH++A+ L NG D+ ++ +GH + TQ Y Sbjct: 244 TLRHTYASMQLRNGLDIYTLSLNMGHSSIEMTQRYV 279 >gi|189459539|ref|ZP_03008324.1| hypothetical protein BACCOP_00163 [Bacteroides coprocola DSM 17136] gi|189465731|ref|ZP_03014516.1| hypothetical protein BACINT_02092 [Bacteroides intestinalis DSM 17393] gi|332877255|ref|ZP_08445004.1| integron integrase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|189433791|gb|EDV02776.1| hypothetical protein BACCOP_00163 [Bacteroides coprocola DSM 17136] gi|189433995|gb|EDV02980.1| hypothetical protein BACINT_02092 [Bacteroides intestinalis DSM 17393] gi|332684845|gb|EGJ57693.1| integron integrase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 372 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 16/204 (7%) Query: 99 LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158 +K+ ++ + E + K+ +LP L++++ ++D + D R Sbjct: 162 IKFYYEKVLGQERRCYKVNRAKREKTLPDVLSKEEIKKILDATV---------TDLRFFC 212 Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC 217 + +LY GLRISE L L P +I + +S +R+ QGKG K R L + K + EY L Sbjct: 213 MFSILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRYTLLSKPLMKKLTEYNRL- 271 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 ++ LF G+P + + ++ R G+ H LRHSFATHLL G Sbjct: 272 -----YKPKVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFATHLLEQG 326 Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301 D++ ++ ++GH + TT+ Y ++ Sbjct: 327 TDIKIVKELMGHNNIKTTERYVHI 350 >gi|86142374|ref|ZP_01060884.1| tyrosine type site-specific recombinase [Leeuwenhoekiella blandensis MED217] gi|85831126|gb|EAQ49583.1| tyrosine type site-specific recombinase [Leeuwenhoekiella blandensis MED217] Length = 405 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 81/277 (29%), Positives = 128/277 (46%), Gaps = 30/277 (10%) Query: 31 LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90 LS+ TL+ Y T QFL E + ++ R I I+ RR R Sbjct: 125 LSEQTLKVYGNFTVQFLNHYKNKPIENLNVRAFRAF----IEEVIAFRRYSISSHRQCIS 180 Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150 +L + L++ K ++ ++ KK LP L+ K+ + L+ Sbjct: 181 ALKHLSILLEFPK-------AHFDGLQRPKKDKKLPVVLSRKEVIDLLRAT--------- 224 Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKA 209 + ++ IL LLY GLRI E L+L I D+ + I+ GKG K R V L +V Sbjct: 225 -PNLKHRTILALLYSAGLRIGELLALRCDAIDLDRMQVHIKKGKGRKDRTVKLAQAVVPL 283 Query: 210 ILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 +L Y + P L G G+ + G + ++++ G+ + T HTLRHS Sbjct: 284 LLNYMESYAPTHY-------LIPGRDGQGYSAGAIRTFLKKSCTRAGIKKAVTPHTLRHS 336 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 +ATH++ +G LR IQ +LGH + TT IYT+V+ ++ Sbjct: 337 YATHMMDHGVALRHIQELLGHAKPETTMIYTHVSQQD 373 >gi|28898639|ref|NP_798244.1| site-specific recombinase IntIA [Vibrio parahaemolyticus RIMD 2210633] gi|28806857|dbj|BAC60128.1| site-specific recombinase IntIA [Vibrio parahaemolyticus RIMD 2210633] Length = 320 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 88/314 (28%), Positives = 136/314 (43%), Gaps = 65/314 (20%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93 T++SY ++F++F F K++ IR LS+ I +K+ ++ +L+ Sbjct: 22 TIESYLFWIKRFIVFHQFAHPSKLSEDDVIRFLSHLAI--------DEKVAVKTQALALN 73 Query: 94 GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV--DNVLLHTSHETKW 151 I + K ++ L+MR ++L EK+ ++ D V H Sbjct: 74 AISFLYRDFFKTPLS-----LDMR-------FQKSLTEKKLPVVLTRDEVRRFVQH---- 117 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL-------- 202 ID R + LLYG GLRI E L L Q+I D +R+ QGKG K R V L Sbjct: 118 IDPRYKLHIQLLYGSGLRIMECLRLRIQDIDYDYGAVRVWQGKGGKNRTVTLAKELHEPL 177 Query: 203 ----------------LPS-----VRKAILEYYDLCPFDLNLNIQLPLFR--------GI 233 +P + + + Y D N + P + + Sbjct: 178 KSQMNFARNYYFKDRHVPGYAGVYISEGLRRKYPNAELDFNWHFLFPSNKLSVDKETGQL 237 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R +N QR +++ + + T HTLRHSFATHLL +G D+R++Q LGH + Sbjct: 238 RRHHINESAIQRAVKRSALDANIEKTVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVK 297 Query: 294 TTQIYTNVNSKNGG 307 TTQIYT+V + G Sbjct: 298 TTQIYTHVIERGAG 311 >gi|293371016|ref|ZP_06617558.1| integron integrase [Bacteroides ovatus SD CMC 3f] gi|292633946|gb|EFF52493.1| integron integrase [Bacteroides ovatus SD CMC 3f] Length = 368 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 94/190 (49%), Gaps = 23/190 (12%) Query: 120 KKSNSLPRALNE---KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 K+ SLP L++ K+ L + N+ H ++ L+Y GLR SE L+L Sbjct: 184 KEYKSLPEVLSKNEIKRILAQISNIKHH-------------CMISLVYSAGLRRSELLNL 230 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-IRG 235 TPQ+I + ++RI GKG K R L P + + + Y+ Q LF G G Sbjct: 231 TPQDINSETMSVRIMGKGKKCRYSLLSPKLLEELRHYFR------EYRPQKWLFEGETPG 284 Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 + + + +++ G+ H LRHSFATHLL G DL +IQ +LGH + TT Sbjct: 285 EQYSASALVKVLKEAAHRAGIKHRVHVHMLRHSFATHLLEQGTDLHTIQELLGHNDIKTT 344 Query: 296 QIYTNVNSKN 305 IY +V+S + Sbjct: 345 TIYLHVSSAH 354 >gi|327440195|dbj|BAK16560.1| integrase [Solibacillus silvestris StLB046] Length = 313 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 83/290 (28%), Positives = 135/290 (46%), Gaps = 24/290 (8%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEE------------KITIQTIRQLSYTEIRAFISK 77 G S+ T + YE D F+ FL E+ ITI I+++S ++ F+ Sbjct: 19 GKSQRTRKEYEYDLILFMRFLKAIEEDIPLDRLHTIDISTITIDQIKEVSLEDLYLFMEY 78 Query: 78 RRTQKIGDRSLK-RSLSGIKSFLKYLK-KRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 Q+ S + R ++ +KSF KYLK KR++ E+ ++ K P LN +A Sbjct: 79 CEVQRGNSSSARARKVATLKSFFKYLKGKRRLIDENPAEHLETPKIGRRQPVYLNYNEAK 138 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 + V +T+ AR+ ++ G+R+SE SL +I + L + GKG+ Sbjct: 139 DFIGAV------QTQSYSARDECMMVFFLNLGIRVSELCSLNIDSI--NGRMLTVIGKGN 190 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 K R V L + A L+ Y + + PLF +G R ++ + Sbjct: 191 KERHVYLNDACMNA-LDKYLQERHAYKGDGKEPLFISQKGTRFARQSIARIVKVINANSH 249 Query: 256 LPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 P T H LRH+ AT + +G D+R++Q ILGH ++TTQIYT++ + Sbjct: 250 SPKEKLTPHKLRHTSATMMYKSGADIRTLQHILGHSSVATTQIYTHIEDE 299 >gi|329963595|ref|ZP_08301073.1| integron integrase [Bacteroides fluxus YIT 12057] gi|328528500|gb|EGF55473.1| integron integrase [Bacteroides fluxus YIT 12057] Length = 372 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 16/204 (7%) Query: 99 LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158 +K+ ++ + E + K+ +LP L++++ ++D + D R Sbjct: 162 IKFYYEKVLGQERRCYKVNRAKREKTLPDVLSKEEIKKILDATV---------TDLRFFC 212 Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC 217 + +LY GLRISE L L P +I + +S +R+ QGKG K R L + K + EY L Sbjct: 213 MFSILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRYTLLSKPLMKKLTEYNRL- 271 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 ++ LF G+P + + ++ R G+ H LRHSFATHLL G Sbjct: 272 -----YKPKVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFATHLLEQG 326 Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301 D++ ++ ++GH + TT+ Y ++ Sbjct: 327 TDIKIVKELMGHNNIKTTERYVHI 350 >gi|289806186|ref|ZP_06536815.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 164 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 83/149 (55%), Gaps = 2/149 (1%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213 R+ A+L ++YG GLR+SE + L +++ D + + GKG K R +P+ + I + Sbjct: 16 VRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVTWIEHW 75 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 DL L + + LF GK ++ Q+ + GL H LRHSFATH+ Sbjct: 76 LDLRG--LFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHM 133 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 L + GDLR +Q +LGH LSTTQIYT+++ Sbjct: 134 LESSGDLRGVQELLGHANLSTTQIYTHLD 162 >gi|150390005|ref|YP_001320054.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF] gi|149949867|gb|ABR48395.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF] Length = 354 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 90/295 (30%), Positives = 142/295 (48%), Gaps = 45/295 (15%) Query: 22 LQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 LQ LE + +G S T +SY ++FL F+ E +T Q + + Y + Sbjct: 81 LQQLEKQFTLKGYSPKTKKSYIGHVKRFLGFIN-NKPEVLTKQDVEKYMYHLLNV----- 134 Query: 79 RTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 Q+ ++LS IK + ++ LKK K+ + ++ KK +LP L++++ L++ Sbjct: 135 --QENSHAFANQALSAIKFYYQHSLKKDKV-----LYDLPRPKKEKTLPNILSQREVLSI 187 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196 +D+V + ++ +IL L Y GLR+ E + L +I D+ + + QGKG K Sbjct: 188 LDSV----------NNIKHKSILLLTYSAGLRVGEVVRLKVGDIDSDRMLIHVRQGKGRK 237 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKP---LNPGVFQRYIRQL 250 R +L V + L Y + I+ P LF G GK L Q+ Sbjct: 238 DRYT-ILSEVALSTLRKYAM--------IEKPKDWLFPG--GKENCFLTERSVQKTFSVA 286 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + + + H+LRHSFATHLL G DLR IQ +LGH TT+IYT+V+ N Sbjct: 287 CKRAKVKKHASVHSLRHSFATHLLEGGTDLRYIQELLGHSSSKTTEIYTHVSVAN 341 >gi|325971099|ref|YP_004247290.1| tyrosine recombinase xerC [Spirochaeta sp. Buddy] gi|324026337|gb|ADY13096.1| Tyrosine recombinase xerC [Spirochaeta sp. Buddy] Length = 297 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 83/307 (27%), Positives = 137/307 (44%), Gaps = 36/307 (11%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITI-QTIRQLSYTEIRAFISKRRTQKIGDRS 87 R LS+ TL +YE R L +++T ++ + + R+ + +R + + S Sbjct: 18 RSLSEHTLCAYE---RDLLQLQSYFTSLQVPLLEASREDARMFVRYLV---KDSSYAQSS 71 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 + R +S +SF L K + + + ++ + LP L ++ L+ Sbjct: 72 INRKISCARSFYSSLLKAERIASNPFSLIAVHRQMDRLPSVLTVEEVTALLSLPY----- 126 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207 + R+ + LLY G RISE LS+ +I + +R+ GKG+K R V Sbjct: 127 -ADFPSTRDMTVFTLLYDTGCRISELLSIKESDIEWETKRVRVLGKGNKSRYV------- 178 Query: 208 KAILEYYDLCPFDLNLNIQLP--------LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 + D C L+ + L L +GK L R LG Sbjct: 179 ----FFTDHCASLLSSYLSLKHERFSNPLLICSNKGKQLPMSTVGSMFAVYRSRLGWQKP 234 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T H LRH++ATHLL NG D+R +Q +LGH +STTQIYT+V+ + + +Y +HP Sbjct: 235 FTPHVLRHTYATHLLDNGADIRLVQELLGHQSISTTQIYTHVSKER----LAHVYAYSHP 290 Query: 320 SITQKDK 326 ++D+ Sbjct: 291 HGRKQDE 297 >gi|294646923|ref|ZP_06724544.1| integron integrase [Bacteroides ovatus SD CC 2a] gi|294810786|ref|ZP_06769432.1| integron integrase [Bacteroides xylanisolvens SD CC 1b] gi|292637868|gb|EFF56265.1| integron integrase [Bacteroides ovatus SD CC 2a] gi|294441974|gb|EFG10795.1| integron integrase [Bacteroides xylanisolvens SD CC 1b] Length = 368 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 94/190 (49%), Gaps = 23/190 (12%) Query: 120 KKSNSLPRALNE---KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 K+ SLP L++ K+ L + N+ H ++ L+Y GLR SE L+L Sbjct: 184 KEYKSLPEVLSKNEIKRILAQISNIKHH-------------CMISLVYSAGLRRSELLNL 230 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-IRG 235 TPQ+I + ++RI GKG K R L P + + + Y+ Q LF G G Sbjct: 231 TPQDINSETMSVRIMGKGKKCRYSLLSPKLLEELRHYFR------EYRPQKWLFEGETPG 284 Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 + + + +++ G+ H LRHSFATHLL G DL +IQ +LGH + TT Sbjct: 285 EQYSASALVKVLKEAAHRAGIKHRVHVHMLRHSFATHLLEQGTDLHTIQELLGHNDIKTT 344 Query: 296 QIYTNVNSKN 305 IY +V+S + Sbjct: 345 TIYLHVSSAH 354 >gi|317477406|ref|ZP_07936636.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|316906434|gb|EFV28158.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 239 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 16/204 (7%) Query: 99 LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158 +K+ ++ + E + K+ +LP L++++ ++D + D R Sbjct: 29 IKFYYEKVLGQERRCYKVNRAKREKTLPDVLSKEEIKKILDATV---------TDLRFFC 79 Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC 217 + +LY GLRISE L L P +I + +S +R+ QGKG K R L + K + EY L Sbjct: 80 MFSILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRYTLLSKPLMKKLTEYNRL- 138 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 ++ LF G+P + + ++ R G+ H LRHSFATHLL G Sbjct: 139 -----YKPKVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFATHLLEQG 193 Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301 D++ ++ ++GH + TT+ Y ++ Sbjct: 194 TDIKIVKELMGHNNIKTTERYVHI 217 >gi|222446012|ref|ZP_03608527.1| hypothetical protein METSMIALI_01661 [Methanobrevibacter smithii DSM 2375] gi|261349449|ref|ZP_05974866.1| integrase-recombinase protein [Methanobrevibacter smithii DSM 2374] gi|222435577|gb|EEE42742.1| hypothetical protein METSMIALI_01661 [Methanobrevibacter smithii DSM 2375] gi|288861812|gb|EFC94110.1| integrase-recombinase protein [Methanobrevibacter smithii DSM 2374] Length = 302 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 61/183 (33%), Positives = 94/183 (51%), Gaps = 9/183 (4%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKW---IDARNSAILYLLYGCGLRISEALSL 176 K+ S P L +K+ L+D++ + ++ + R+ I+ LLY GLR+SE ++L Sbjct: 121 KRIKSPPNFLTQKEVKQLLDSITWDENSDSDFRIITKLRDKLIVTLLYSSGLRVSELINL 180 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 T N+ + L I GK + R++ L S ++ I +Y + N L G Sbjct: 181 TVDNVNFEGKQLSIVGKNNS-RVILLDESTKQLIQKYLEKRTQKSNY-----LVVNKSGN 234 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 PL P Q I++ G+ T H LRHS+ATHL G +++ IQ +LGH LSTTQ Sbjct: 235 PLTPRYVQLMIKKYGNESGIEKKITPHILRHSYATHLFEQGVNIKIIQQLLGHSNLSTTQ 294 Query: 297 IYT 299 IY+ Sbjct: 295 IYS 297 >gi|12831416|gb|AAK02074.1| site-specific recombinase IntIA [Vibrio metschnikovii] Length = 320 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 64/188 (34%), Positives = 88/188 (46%), Gaps = 38/188 (20%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI 210 +D + + LLYG GLR+ E + L Q+I D LRI QGKG K R V L + I Sbjct: 118 VDPKYQLHIKLLYGSGLRLMECVRLRVQDIDFDYGALRIWQGKGGKNRTVTLAKELHPLI 177 Query: 211 LE-------YYD----------------------LCPFDLNLNIQLPL--------FRGI 233 E YYD PF+ + + P + Sbjct: 178 KEQISLAKRYYDKDMEAKGYGGVWLPNALNSKYPTAPFEFHWHYLFPSNALSVDQESNLL 237 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R +N QR +++ + + S + HTLRHSFATHLL +G D+R++Q LGH +S Sbjct: 238 RRHHINETSLQRTVKRAVKEAEIKKSVSCHTLRHSFATHLLESGADIRTVQEQLGHADVS 297 Query: 294 TTQIYTNV 301 TTQIYT+V Sbjct: 298 TTQIYTHV 305 >gi|85706620|ref|ZP_01037713.1| probable integrase [Roseovarius sp. 217] gi|85669032|gb|EAQ23900.1| probable integrase [Roseovarius sp. 217] Length = 175 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 61/148 (41%), Positives = 78/148 (52%), Gaps = 9/148 (6%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDL 216 A L Y GLR SEA+SL +I D+ L+++ GKG K R V L P + + Y+ L Sbjct: 14 AALTTAYAAGLRASEAVSLKVTDIDSDRMVLQVRHGKGAKDRTVMLSPQLLGILRTYWRL 73 Query: 217 C-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275 P D LF G KP++ V R + GL + HTLRHS ATHLL Sbjct: 74 ARPKDW-------LFPGRGDKPIDVQVLHSTCRSATKAAGLTKKVSVHTLRHSSATHLLE 126 Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNS 303 +G D+R IQ +LGH LSTT YT V + Sbjct: 127 SGVDIRVIQVLLGHSNLSTTARYTQVAT 154 >gi|115345577|ref|YP_771759.1| tyrosine recombinase [Roseobacter denitrificans OCh 114] gi|115292898|gb|ABI93351.1| tyrosine recombinase [Roseobacter denitrificans OCh 114] Length = 302 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 83/283 (29%), Positives = 134/283 (47%), Gaps = 21/283 (7%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDR 86 ERG+ TL++Y D R F F Y LS +I A+ S R + Sbjct: 16 ERGVGNHTLRAYAQDLRTFARFTKEY-------HLADPLSKDDILAYHSHLRDELHAKPA 68 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTLVDNVLLHT 145 S++R L +KS+ + R S ++R +++ LPR ++ + + VL Sbjct: 69 SIERRLVTLKSYFAWRADRNSALPSPFADVRISVRIPRRLPRPVDRET----LKAVLQSE 124 Query: 146 SHETKWIDARNSA---ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202 + T A ++ LL GLRISE +L ++ D S + ++GKG+K R+V + Sbjct: 125 TGPTGAQPADQEVTILMIKLLIVTGLRISELTTLKICDVTADASQMIVRGKGNKERMVFV 184 Query: 203 LPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 + + + Y D D +++ PLF G+ L F++ +R L LG+ Sbjct: 185 PNAELQEMFRRYCADRVRHD---SLKSPLFLNAVGRRLRSQTFRKRLRVLSHRLGITPHL 241 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 T H RHS AT L+ G D+R +Q++LGH L TT+IY V++ Sbjct: 242 TPHRFRHSAATLLIEEGTDIRMVQALLGHASLRTTEIYVRVSN 284 >gi|255994142|ref|ZP_05427277.1| integrase/recombinase XerD [Eubacterium saphenum ATCC 49989] gi|255993810|gb|EEU03899.1| integrase/recombinase XerD [Eubacterium saphenum ATCC 49989] Length = 298 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 79/310 (25%), Positives = 147/310 (47%), Gaps = 24/310 (7%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 K+ +N+ LE +R LS T+ +Y D + F IF+ Y + I+ +++ T+I F+ Sbjct: 5 KDMKNFFVYLEKDRSLSTSTIGAYHEDLQAFHIFV--YGK---GIKGYKRVKNTDIDDFV 59 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 + Q +++R +S +++F YL ++ L + K+ L + + + Sbjct: 60 ENLKRQDYAPATIRRRISSVRAFYNYLVNTGAMRKNPTLGL----KAPKLNKKTIDYFTV 115 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 +D +L + +T R+ A+L L+Y GL+++E L L ++ D ++ L I Sbjct: 116 EEIDLLLASVTDDTDS-GIRDKAVLELMYAAGLQLTELLELKMSDV-DIRAGL-ITAGLK 172 Query: 196 KIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 K R++P+ RKA+ +Y + PLF K + + + Sbjct: 173 KRRVIPIGSHARKAVEKYISDVRKLKFSKLSKKDASSPLFVNYLNKKFSRQGIWKIFKDY 232 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDW 309 G+ + T + LR+SFA H+L NG D++++Q ++GH +S T Q Y + S Sbjct: 233 AAKTGI-IKFTPNMLRNSFAVHMLQNGADIKTVQELMGHENISITKQYYIEIPSST---- 287 Query: 310 MMEIYDQTHP 319 +YD+THP Sbjct: 288 -KLVYDKTHP 296 >gi|283458429|ref|YP_003363053.1| site-specific recombinase XerD [Rothia mucilaginosa DY-18] gi|283134468|dbj|BAI65233.1| site-specific recombinase XerD [Rothia mucilaginosa DY-18] Length = 437 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 74/254 (29%), Positives = 117/254 (46%), Gaps = 28/254 (11%) Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV- 141 +G S+ R+++ ++ + I + K LP+A++ V+++ Sbjct: 189 LGPNSIARTMAAVRGAHAFWVSALIVPTDPAAPVTPPKNVKRLPKAVS-------VEDIQ 241 Query: 142 -LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---------DDQSTL--- 188 LL RN AIL LY G R+SE L+ ++ +Q TL Sbjct: 242 RLLAVPDRETATGLRNRAILEFLYATGARVSEMLNADIDDVHFEGTLTDEDGNQITLPGY 301 Query: 189 -RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQR 245 R+ GKG+K R+VP+ +KAI +Y L + + LF RG L Sbjct: 302 VRLFGKGNKERLVPIGSYAQKAIQDYLVRARPSLVAHGKGTAALFVNGRGGRLGRQGAWL 361 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 +++ GL + H++RHSFATHLL G D+R +Q +LGH ++TTQ+YT V + Sbjct: 362 ILKEAAEAAGLSSDFSPHSMRHSFATHLLQGGADIRVVQELLGHASIATTQVYTKVTPEG 421 Query: 306 GGDWMMEIYDQTHP 319 +ME+Y HP Sbjct: 422 ----LMEVYRMAHP 431 >gi|153839218|ref|ZP_01991885.1| site-specific recombinase IntIA [Vibrio parahaemolyticus AQ3810] gi|308094780|ref|ZP_05892029.2| site-specific recombinase IntIA [Vibrio parahaemolyticus AN-5034] gi|308095642|ref|ZP_05907294.2| site-specific recombinase IntIA [Vibrio parahaemolyticus Peru-466] gi|308125806|ref|ZP_05777497.2| site-specific recombinase IntIA [Vibrio parahaemolyticus K5030] gi|308126623|ref|ZP_05911350.2| site-specific recombinase IntIA [Vibrio parahaemolyticus AQ4037] gi|149747246|gb|EDM58234.1| site-specific recombinase IntIA [Vibrio parahaemolyticus AQ3810] gi|308086647|gb|EFO36342.1| site-specific recombinase IntIA [Vibrio parahaemolyticus Peru-466] gi|308093266|gb|EFO42961.1| site-specific recombinase IntIA [Vibrio parahaemolyticus AN-5034] gi|308107453|gb|EFO44993.1| site-specific recombinase IntIA [Vibrio parahaemolyticus AQ4037] gi|308111500|gb|EFO49040.1| site-specific recombinase IntIA [Vibrio parahaemolyticus K5030] Length = 341 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 89/322 (27%), Positives = 139/322 (43%), Gaps = 65/322 (20%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISKRRTQKIGD 85 + R + T++SY ++F++F F K++ IR LS+ I +K+ Sbjct: 35 LTRYYANKTIESYLFWIKRFIVFHQFAHPSKLSEDDVIRFLSHLAI--------DEKVAV 86 Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV--DNVLL 143 ++ +L+ I + K ++ L+MR ++L EK+ ++ D V Sbjct: 87 KTQALALNAISFLYRDFFKTPLS-----LDMR-------FQKSLTEKKLPVVLTRDEVRR 134 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL 202 H ID R + LLYG GLRI E L L Q+I D +R+ QGKG K R V L Sbjct: 135 FVQH----IDPRYKLHIQLLYGSGLRIMECLRLRIQDIDYDYGAVRVWQGKGGKNRTVTL 190 Query: 203 ------------------------LPS-----VRKAILEYYDLCPFDLNLNIQLPLFR-- 231 +P + + + Y D N + P + Sbjct: 191 AKELHEPLKSQMNFARNYYFKDRHVPGYAGVYISEGLRRKYPNAELDFNWHFLFPSNKLS 250 Query: 232 ------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285 +R +N QR +++ + + T HTLRHSFATHLL +G D+R++Q Sbjct: 251 VDKETGQLRRHHINESAIQRAVKRSALDANIEKTVTCHTLRHSFATHLLESGADIRTVQE 310 Query: 286 ILGHFRLSTTQIYTNVNSKNGG 307 LGH + TTQIYT+V + G Sbjct: 311 QLGHTDVKTTQIYTHVIERGAG 332 >gi|260774302|ref|ZP_05883217.1| integron integrase IntI4 [Vibrio metschnikovii CIP 69.14] gi|260611263|gb|EEX36467.1| integron integrase IntI4 [Vibrio metschnikovii CIP 69.14] Length = 320 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 64/188 (34%), Positives = 88/188 (46%), Gaps = 38/188 (20%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI 210 +D + + LLYG GLR+ E + L Q+I D LRI QGKG K R V L + I Sbjct: 118 VDPKYQLHIKLLYGSGLRLMECVRLRVQDIDFDYGALRIWQGKGGKNRTVTLAKELHPLI 177 Query: 211 LE-------YYD----------------------LCPFDLNLNIQLPL--------FRGI 233 E YYD PF+ + + P + Sbjct: 178 KEQISLAKRYYDKDMETKGYGGVWLPNALNSKYPTAPFEFHWHYLFPSNALSVDQESNLL 237 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R +N QR +++ + + S + HTLRHSFATHLL +G D+R++Q LGH +S Sbjct: 238 RRHHINETSLQRTVKRAVKEAEIKKSVSCHTLRHSFATHLLESGADIRTVQEQLGHADVS 297 Query: 294 TTQIYTNV 301 TTQIYT+V Sbjct: 298 TTQIYTHV 305 >gi|219852288|ref|YP_002466720.1| integrase family protein [Methanosphaerula palustris E1-9c] gi|219546547|gb|ACL16997.1| integrase family protein [Methanosphaerula palustris E1-9c] Length = 292 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 63/223 (28%), Positives = 108/223 (48%), Gaps = 24/223 (10%) Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 ++L R +S + SF ++L + + + + K R L +Q L L++++ Sbjct: 76 KTLHRIISTLSSFYRFLYAQGAVAVNPVTGIDRPKIKRQELRYLKHRQVLKLIESMP--- 132 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 R+ ++ ++Y G+R+SE ++ ++I D T+RI+GKGDKIR V + Sbjct: 133 -------SVRDQLVVRMIYATGVRVSELCGISIEHIDFDDLTIRIRGKGDKIRTV-FIDE 184 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 ++E Y I P F G +G PL+P Q + P T HT+ Sbjct: 185 ETCRLMEIY------AGDRIFGPFFVGQQGHPLSPRTVQHLFE-----VYAPPGVTPHTI 233 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY--TNVNSKNG 306 RHS+A+ L +LR +Q LGH + TT+IY T+++ + G Sbjct: 234 RHSYASELYKRSKNLRVVQENLGHSSIKTTEIYLHTDLDERQG 276 >gi|241663999|ref|YP_002982359.1| site-specific tyrosine recombinase XerD [Ralstonia pickettii 12D] gi|240866026|gb|ACS63687.1| tyrosine recombinase XerD [Ralstonia pickettii 12D] Length = 298 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 83/304 (27%), Positives = 146/304 (48%), Gaps = 20/304 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q + L +E GL++ TL +Y D + +LA ++I + ++ + + R Sbjct: 10 QRFCDALWLEDGLARNTLDAYRRDLTLYAHWLAARG------KSIAETEDGDLADYFAAR 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 + S R + K F ++ L++ ++T+ + L + K+ P+ L+E Q L Sbjct: 64 HAESRAS-SANRRRTVFKRFFQWALREHVVSTDPSRL-LPTAKQPPRFPKTLSETQVEAL 121 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDK 196 ++ + T + R+ A++ L+Y GLR+SE ++L + +++ + GKG K Sbjct: 122 INAPDVDTP-----LGLRDRAMIELMYASGLRVSEIVALKTVEVGLNEGVVRVVGGKGGK 176 Query: 197 IRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 R+VP + Y D L LF RG+ + F I++ Sbjct: 177 DRLVPFGAEAGDWLRRYLRDGRTALLGERTADALFVTARGEGMTRQAFWYLIKRYALLAD 236 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V + + ++ Sbjct: 237 IHAPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARER----LRTLHA 292 Query: 316 QTHP 319 Q HP Sbjct: 293 QHHP 296 >gi|320450285|ref|YP_004202381.1| integrase/recombinase [Thermus scotoductus SA-01] gi|320150454|gb|ADW21832.1| integrase/recombinase [Thermus scotoductus SA-01] Length = 304 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 84/291 (28%), Positives = 139/291 (47%), Gaps = 34/291 (11%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 + + L +ERG S ++ Y D ++ F EE T +RA + K Sbjct: 25 YAEYLLLERGYSPRGVRRYLQD---LALWFRFLQEEGFTPGP------EAVRALLLK--- 72 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL-NMRNLKKSNSLPRALNEKQALTLVD 139 ++ R ++ L+ ++S+ +YL + K S+ + K LP ++ ++ Sbjct: 73 ERWAPRRVQGFLAALRSYYRYLSQVKGEAVSDPTEGIGRPKAGRRLPLHPAPEELRRFLE 132 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGDK 196 L E + + S + LYG GLRISEALSL +N++ + S +R+ GKG+K Sbjct: 133 A--LEAEKEARLL----SRLARFLYGTGLRISEALSLKGRNVILEGSVPVAIRVVGKGNK 186 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 R+VPL + R+ +LE L P N++I F G+ RY+ R L Sbjct: 187 ERLVPLSRTAREVLLE---LGPPQGNVSI----FTFTHGRHRGSVPSARYVEARFREAAL 239 Query: 257 -----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 P T H LRH++AT L+ NG +L +++ +LGH ++TTQIY + + Sbjct: 240 RAGLDPRRFTPHKLRHAYATLLVENGVELDAVKDLLGHESIATTQIYLHAS 290 >gi|186471692|ref|YP_001863010.1| integrase family protein [Burkholderia phymatum STM815] gi|184198001|gb|ACC75964.1| integrase family protein [Burkholderia phymatum STM815] Length = 292 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 86/292 (29%), Positives = 129/292 (44%), Gaps = 35/292 (11%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF-IS 76 RQ L +++I R LS T +SY F E L EIRA+ I Sbjct: 5 RQRMLHDMQI-RNLSDNTQKSYLLQVSSFARHFRRSPE---------MLGPEEIRAWLIY 54 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 R +K+ SL ++ ++ + KR + E L +K LP L+ ++ T Sbjct: 55 LREERKLAPASLSPAIGALRFLYRVTLKRDWSDEDFPLP----RKPVRLPVVLSLEEITT 110 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGD 195 D++ ++ IL + Y GLR+SE + L +I + +R+ QGK Sbjct: 111 FFDSI----------PSLKHRTILMVAYAAGLRVSEVVHLKVTDIDSKRMVIRVNQGKNR 160 Query: 196 KIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRY 253 K R V L P + + + Y+ D P D LF G I G P+ R R+ Sbjct: 161 KDRYVMLSPRLLEVLRTYWQDAHPRDW-------LFPGDIPGHPITRTAVARICALARQR 213 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 G+ T H+LRH+FATHLL G D+R IQ ++GH L+TT Y + + Sbjct: 214 SGITKPVTPHSLRHAFATHLLETGTDVRRIQLLMGHRSLATTSRYLRIATST 265 >gi|312136250|ref|YP_004003587.1| integrase family protein [Methanothermus fervidus DSM 2088] gi|311223969|gb|ADP76825.1| integrase family protein [Methanothermus fervidus DSM 2088] Length = 271 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 66/209 (31%), Positives = 104/209 (49%), Gaps = 40/209 (19%) Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174 N++ K S+P++++EK+ L + E R+ IL LLY GLR+SE + Sbjct: 92 NLKTPKVPKSIPKSISEKEVKRLF------KAAEK----LRDKVILMLLYKTGLRVSELV 141 Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234 +L ++I +++++GKG+K R+V K +LE Y I+ Sbjct: 142 NLKLKDIDFTDRSIKVRGKGNKERVV-FFDEECKTLLEKY------------------IK 182 Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLS-------TTAHTLRHSFATHLLSNGGDLRSIQSIL 287 +N + +RQ++R + T H LRHS+ATHLL G ++R IQ +L Sbjct: 183 NNSVNEKLIDISVRQIQRIVKKTAKKAKIKKRVTPHVLRHSYATHLLEKGLNIRYIQKLL 242 Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 GH LSTT+IYT V +K + E YD+ Sbjct: 243 GHSSLSTTEIYTKVTNKK----LKEKYDK 267 >gi|229916013|ref|YP_002884659.1| integrase family protein [Exiguobacterium sp. AT1b] gi|229467442|gb|ACQ69214.1| integrase family protein [Exiguobacterium sp. AT1b] Length = 337 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 81/292 (27%), Positives = 139/292 (47%), Gaps = 27/292 (9%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG------D 85 SK T Q Y D F ++ + ++ +TI S+TEI ++ + Sbjct: 44 SKQTAQRYVYDVLDFFRWVELVSGTELEPETIDLPSFTEIDHAGAEAYATYLALELENAP 103 Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL---TLVDNVL 142 + R LS ++S YL + T + + K+ P L E + L TLV + + Sbjct: 104 SVINRKLSTLQSLFNYLIETNQATVNPFQTVERPKRGKRNPVYLTESEWLDFSTLVRSNV 163 Query: 143 LHTSHETKWID---ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 T+ E W + AR+ I+ LL G+R+SE + L +I + T+R+ GKGDK R+ Sbjct: 164 GMTNREASWYEMNRARDFLIIQLLGLTGMRVSELVGLNWSDINLETGTIRVIGKGDKERL 223 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR----YIRQLRRYLG 255 +P+ + + EY + + + +F+ +G+ + Q +I +L+ YL Sbjct: 224 IPIAGPLLPLLSEYR-------HTSSEGAVFQNEKGQRIAVRTVQHMLKGHIDRLKPYLP 276 Query: 256 LPLS---TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 LS T H LRH+FA+ L G D+ +IQ +LGH ++TTQ+Y ++ + Sbjct: 277 F-LSHKQVTPHKLRHTFASRLAMGGVDVLTIQQLLGHESVATTQVYAHIGDE 327 >gi|317121205|ref|YP_004101208.1| integrase family protein [Thermaerobacter marianensis DSM 12885] gi|315591185|gb|ADU50481.1| integrase family protein [Thermaerobacter marianensis DSM 12885] Length = 318 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 80/292 (27%), Positives = 133/292 (45%), Gaps = 23/292 (7%) Query: 15 LKER-QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY---TEEKITIQTIRQLSYTE 70 L ER + +L+ +ERGL L+ Y D F +LA E +T + Sbjct: 4 LPERAEQYLETKRVERGLRTSRLEEYRRDLADFCRWLAGRLRKNPEDLTDADLAGFDRDG 63 Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPR 127 R +++ +++ + R S + + +++ + + ++ LP Sbjct: 64 ARRWLAHLADRELAPSTRDRRWSTVGGWFRWMVAEGVLPRDPFAGLERPVRGERHKRLPV 123 Query: 128 ALNEKQALTLVDNVL-------LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 L E +A L+ VL +H + + R+ A++ L GLRISEA+ L + Sbjct: 124 YLAETEAERLLRTVLSDEGLTPRQKAHHAR-LKERDHALVTTLLYQGLRISEAVGLRYGD 182 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPL- 238 + D+ TLR+ GKGDK R++PL ++A+L Y P Q PL+ + G+PL Sbjct: 183 VDFDEDTLRVIGKGDKERLLPLHRRTKEALLRYLATWPGPKKPKAPQDPLWWTLTGQPLT 242 Query: 239 -NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289 N +R++ + GL +AH LRH+F T L G DL I+ +LGH Sbjct: 243 KNAAAVKRHLVR----AGL-WRASAHKLRHTFGTRLAEAGVDLLVIKDLLGH 289 >gi|220683973|gb|ACL80794.1| IntIA [Vibrio splendidus] Length = 324 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 63/178 (35%), Positives = 88/178 (49%), Gaps = 38/178 (21%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI-------LEY 213 L+YG GLR+ E L L Q+I D ++R+ QGKG K RIV + P + AI EY Sbjct: 129 LMYGSGLRLMECLRLRMQDIDYDYKSVRVWQGKGGKNRIVTIAPELFPAIKLQQQKSAEY 188 Query: 214 YDLCPFDLNLN-IQLP------------------LFRGIRGKP-----------LNPGVF 243 Y D + + LP LF R P ++P Sbjct: 189 YQQDIHDKAFSGVYLPDSLAKKYPSAERSLNWQFLFPSARLAPDLRTGELRRHHIHPTAL 248 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 Q++I+ + + + + HTLRHSFATHLL +G D+R++Q LGH L TTQIYT++ Sbjct: 249 QKHIKVASQKADIEKNISCHTLRHSFATHLLQSGADIRTVQEQLGHTDLKTTQIYTHI 306 >gi|255326180|ref|ZP_05367266.1| tyrosine recombinase XerD [Rothia mucilaginosa ATCC 25296] gi|255296634|gb|EET75965.1| tyrosine recombinase XerD [Rothia mucilaginosa ATCC 25296] Length = 438 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 74/254 (29%), Positives = 116/254 (45%), Gaps = 28/254 (11%) Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV- 141 +G S+ R+++ ++ + I + K LP+A++ V+++ Sbjct: 190 LGPNSIARTMAAVRGAHAFWVSALIVPTDPAAPVTPPKNVKRLPKAVS-------VEDIQ 242 Query: 142 -LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---------DDQSTL--- 188 LL RN AIL LY G R+SE L+ ++ +Q TL Sbjct: 243 RLLAVPDRETATGLRNRAILEFLYATGARVSEMLNADIDDVHFEGTLTDEDGNQITLPGY 302 Query: 189 -RIQGKGDKIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQR 245 R+ GKG+K R+VP+ +KAI +Y F + LF RG L Sbjct: 303 VRLFGKGNKERLVPIGSYAQKAIQDYLVRARPSFVAHGKGTSALFVNGRGGRLGRQGAWL 362 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 +++ GL + H++RHSFATHLL G D+R +Q +LGH ++TTQ+YT V + Sbjct: 363 ILKEAAEAAGLSSDFSPHSMRHSFATHLLQGGADIRVVQELLGHASIATTQVYTKVTPEG 422 Query: 306 GGDWMMEIYDQTHP 319 +ME+Y HP Sbjct: 423 ----LMEVYRMAHP 432 >gi|187922254|ref|YP_001893896.1| integrase family protein [Burkholderia phytofirmans PsJN] gi|187713448|gb|ACD14672.1| integrase family protein [Burkholderia phytofirmans PsJN] Length = 333 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 92/343 (26%), Positives = 156/343 (45%), Gaps = 45/343 (13%) Query: 8 EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67 E +++ L WL +R S+ T+ SY + +L F+A ++ + +L+ Sbjct: 4 ESLAYWLHAFFHEWLAE---QRNCSRHTVLSYRDAWKLYLQFVARRHHRPVSALKLDELT 60 Query: 68 YTEIRAFI----SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE---SNILNMRNLK 120 E+ AF+ S+RRT IG R+ + L+ I+SF +++ R+ + + +L++ K Sbjct: 61 ADEVLAFLKHSESERRTS-IGTRNCR--LAAIRSFFRFVADREPLSAMQCAAVLSIPTKK 117 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 P L+ + V +L T R+ A+L LLY G RI EAL + P N Sbjct: 118 GPKPEPDYLDGDE----VAAILRRPDRSTP-EGQRDHALLALLYNTGARIQEALDVCPSN 172 Query: 181 I-MDDQSTLRIQGKGDKIRIVPLLP---SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 I + + +++ GKG K RI PL P ++ KA+LE P++ PLF G Sbjct: 173 IRLTAPAQVKLYGKGRKARICPLWPETAALLKALLERQPR-PYNE------PLFVNRYGG 225 Query: 237 PLNPG----VFQRYIR-------QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285 PL+ +Y+R LR+ P HT RH+ +++ G D+ I++ Sbjct: 226 PLSAAGARFKLAQYVRAAAYDSPSLRKKRVHP-----HTFRHTAGVQMIAAGVDVTVIRN 280 Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKKN 328 GH L TT Y N + + ++ T P + ++N Sbjct: 281 WFGHVSLDTTNHYARANIETKRLALEQVDRSTRPGSPPRWRRN 323 >gi|298292762|ref|YP_003694701.1| integrase family protein [Starkeya novella DSM 506] gi|296929273|gb|ADH90082.1| integrase family protein [Starkeya novella DSM 506] Length = 334 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 83/322 (25%), Positives = 137/322 (42%), Gaps = 50/322 (15%) Query: 17 ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 E + +L + ERG TL +Y R + AF +E + + IRA+++ Sbjct: 5 EARLFLDMMAAERGAGANTLAAY---GRDLDDYEAFLVDEGVGPL---EAGTEHIRAWLA 58 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + + S+ R LS ++ F ++L + + ++ LP+ L + T Sbjct: 59 ALSARGLAGASVARKLSAVRQFHRFLYVETYRGDDPAAVLEGPRRGRPLPKVLTLDEVTT 118 Query: 137 LVDNVLLHTSHETKWIDARNS---------------------AILYLLYGCGLRISEALS 175 L++ + A + LLY GLR+SE + Sbjct: 119 LIETAHARAAAPCAAPAAGALPDRAGDAAVRAGEAARRARVACFVELLYATGLRVSELAA 178 Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235 L + ++GKG+K R+VPL + + A+ Y + L Q +G + Sbjct: 179 LPASAANAKGDAIIVRGKGNKERLVPLGEAAKGAMRAYR------VALG-QAATVKGAKA 231 Query: 236 KP-----LNP-----GVFQRY-----IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGD 279 +P L P G R ++ L GL P + H LRH+FA+HLL++G D Sbjct: 232 RPEDGRWLFPSAAASGHITRQQVALDLKDLALAAGLDPSKLSPHVLRHAFASHLLAHGAD 291 Query: 280 LRSIQSILGHFRLSTTQIYTNV 301 LR +Q++LGH +STTQIYT+V Sbjct: 292 LRIVQTLLGHSDISTTQIYTHV 313 >gi|291530097|emb|CBK95682.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3] Length = 338 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 88/321 (27%), Positives = 143/321 (44%), Gaps = 32/321 (9%) Query: 8 EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67 E+ E ++ + LS T+ +Y D QF F + +LS Sbjct: 34 EVKMIEFKTHIDGFINYCRYHKKLSDKTISAYCIDLIQFRCFTS-------------ELS 80 Query: 68 YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127 + +I + + +++KR L+ +K+F YL R I + N + ++ S P Sbjct: 81 KQSLWNYI-EHLNKSYKPKTVKRKLATLKAFTHYLLIRDII-DCNPFD--KIETSIKEPV 136 Query: 128 ALNEKQALTLVDNVLL--HTSHETKWID------ARNSAILYLLYGCGLRISEALSLTPQ 179 L + L + +L +T E D RN+A+L LL+ G R++E +L Q Sbjct: 137 ILPKTIPLDTIGEILCFAYTQIEKSNTDYKKNSAIRNAAVLELLFATGARVAEICNLHSQ 196 Query: 180 NIMDDQSTLRIQGKGDKIRIVPLL-PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238 ++ ++++ GKG K RI+P+ SV + +YY + + ++ F GK L Sbjct: 197 DVDFIGKSVKLYGKGSKERIIPIENTSVLTILSDYYFI--HEEKISDCGYFFVNKYGKRL 254 Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + I + G+ + T H RHSFAT LL D+R IQ +LGH ++TTQIY Sbjct: 255 TEQSVRCMINSYCQTCGISMHITPHMFRHSFATLLLEQDVDIRYIQKLLGHSSITTTQIY 314 Query: 299 TNVNSKNGGDWMMEIYDQTHP 319 T+V S EI HP Sbjct: 315 THVTSAKQK----EIIKTKHP 331 >gi|332306644|ref|YP_004434495.1| integron integrase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173973|gb|AEE23227.1| integron integrase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 321 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 63/194 (32%), Positives = 96/194 (49%), Gaps = 38/194 (19%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206 ++A+N + +LY GLR+ E + L Q+I D ++R+ GKG K R+V L+P++ Sbjct: 119 VNAQNKLAVSILYASGLRLMECMRLRVQDIDFDFKSIRVWHGKGGKHRVVTLADELIPTL 178 Query: 207 RKAIL---EYYD-----------LCPFDLNLNI----------------QL---PLFRGI 233 ++ I +Y D P L L QL P + + Sbjct: 179 QQQITVVKQYLDADLLNPEYSGVYLPHRLRLKFKNANRSIQWQYVFASRQLSKDPEDQSL 238 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R ++ Q+ IR + +P + T HTLRHSFATHLL +G D+R++Q LGH L Sbjct: 239 RRHHIDGSTVQKAIRHAAKKASIPKTVTPHTLRHSFATHLLQSGADIRTVQDQLGHSDLR 298 Query: 294 TTQIYTNVNSKNGG 307 TTQIYT++ + G Sbjct: 299 TTQIYTHILQRGGN 312 >gi|269967891|ref|ZP_06181932.1| site-specific recombinase IntI [Vibrio alginolyticus 40B] gi|269827489|gb|EEZ81782.1| site-specific recombinase IntI [Vibrio alginolyticus 40B] Length = 320 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 62/194 (31%), Positives = 87/194 (44%), Gaps = 38/194 (19%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL-------- 202 ID R + LLYG GLR+ E L L Q+I D +R+ QGKG K R V L Sbjct: 118 IDPRYRLHIQLLYGSGLRVMECLRLRVQDIDYDYGAVRVWQGKGGKNRTVTLAKELHEPL 177 Query: 203 ----------------LPS-----VRKAILEYYDLCPFDLNLNIQLPLFR--------GI 233 +P + + + Y D N + P + + Sbjct: 178 KAQVNLARNYYFKDRHMPGYAGVYISEGLRRKYPKAELDFNWHFLFPSTKLSADRDTGEL 237 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R +N QR +++ + + T HTLRHSFATHLL +G D+R++Q LGH + Sbjct: 238 RRHHINESAIQRAVKRAASDASIEKTVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVK 297 Query: 294 TTQIYTNVNSKNGG 307 TTQIYT+V + G Sbjct: 298 TTQIYTHVIERGAG 311 >gi|167751075|ref|ZP_02423202.1| hypothetical protein EUBSIR_02060 [Eubacterium siraeum DSM 15702] gi|167655993|gb|EDS00123.1| hypothetical protein EUBSIR_02060 [Eubacterium siraeum DSM 15702] Length = 338 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 88/321 (27%), Positives = 143/321 (44%), Gaps = 32/321 (9%) Query: 8 EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67 E+ E ++ + LS T+ +Y D QF F + +LS Sbjct: 34 EVKMIEFKTHIDGFINYCRYHKKLSDKTISAYCIDLIQFRCFTS-------------ELS 80 Query: 68 YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127 + +I + + +++KR L+ +K+F YL R I + N + ++ S P Sbjct: 81 KQSLWNYI-EHLNKSYKPKTVKRKLATLKAFTHYLLIRDII-DCNPFD--KIETSIKEPV 136 Query: 128 ALNEKQALTLVDNVLL--HTSHETKWID------ARNSAILYLLYGCGLRISEALSLTPQ 179 L + L + +L +T E D RN+A+L LL+ G R++E +L Q Sbjct: 137 ILPKTIPLDTIGEILCFAYTQIEKSNTDYKKNSAIRNAAVLELLFATGARVAEICNLHSQ 196 Query: 180 NIMDDQSTLRIQGKGDKIRIVPLL-PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238 ++ ++++ GKG K RI+P+ SV + +YY + + ++ F GK L Sbjct: 197 DVDFIGKSVKLYGKGSKERIIPIENTSVLTILSDYYFI--HEEKISDCGYFFVNKYGKRL 254 Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + I + G+ + T H RHSFAT LL D+R IQ +LGH ++TTQIY Sbjct: 255 TEQSVRCMINSYCQTCGISMHITPHMFRHSFATLLLEQDVDIRYIQKLLGHSSITTTQIY 314 Query: 299 TNVNSKNGGDWMMEIYDQTHP 319 T+V S EI HP Sbjct: 315 THVTSAKQK----EIIKTKHP 331 >gi|295135108|ref|YP_003585784.1| tyrosine type site-specific recombinase [Zunongwangia profunda SM-A87] gi|294983123|gb|ADF53588.1| tyrosine type site-specific recombinase [Zunongwangia profunda SM-A87] Length = 363 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 76/292 (26%), Positives = 135/292 (46%), Gaps = 31/292 (10%) Query: 20 NWLQNLEIERG--------LSKLTLQSYECDT-RQFLIFLAFYTEEKITIQTIRQLSYTE 70 +W +N +I G L KL L+ Y T + ++ F + + + I L E Sbjct: 80 SWFRNRDIPGGYRRCPENYLLKLELKRYSVSTIKTYVTFFEKFINH-YSQRDIDSLDECE 138 Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 IR F+ + + + ++++ IK + + + + +M ++ + LP+ ++ Sbjct: 139 IRLFLQSLIQENKSNSYINQAINAIKFYYEVV----CGMPNRFYDMERPRREHRLPQVIS 194 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 ++ +++N + ++ I+ LLY GLR SE L+L Q+I + ++I Sbjct: 195 REEIFAIIENTN----------NIKHRCIVELLYSSGLRRSELLNLKLQDIDSKRMLIKI 244 Query: 191 Q-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 + GKG+K R L + +YY ++ LF G GK + + ++ Sbjct: 245 KAGKGNKDRFTILSEKCLAHLRQYYR------KWKPEIYLFEGQPGKQYSGASVLKVVKN 298 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + + H LRHSFATHLL +G DLR IQ +LGH TT+IYT+V Sbjct: 299 ASSKAKPNKNISPHILRHSFATHLLESGVDLRKIQVLLGHGSTKTTEIYTHV 350 >gi|254513132|ref|ZP_05125198.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11] gi|221533131|gb|EEE36126.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11] Length = 236 Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 60/149 (40%), Positives = 81/149 (54%), Gaps = 8/149 (5%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDL 216 A L + YG GLR SE +LT +I D+ + + QGKG K R V L P + + +Y+ Sbjct: 69 AALSISYGAGLRASEVCNLTAGDIDSDRVLIHVVQGKGRKDRKVMLSPDLLDLLRDYW-- 126 Query: 217 CPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275 C + LF G + P++P R +R G+ T HTLRHSFATHLL Sbjct: 127 C----EARPEGWLFPGKPKINPISPRQLNRAFTSAKRMAGINKPATLHTLRHSFATHLLE 182 Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 G D+R IQ +LGH +L+TT YT V +K Sbjct: 183 AGTDVRVIQVLLGHAKLTTTAQYTKVATK 211 >gi|325261284|ref|ZP_08128022.1| recombinase [Clostridium sp. D5] gi|324032738|gb|EGB94015.1| recombinase [Clostridium sp. D5] Length = 313 Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 75/292 (25%), Positives = 137/292 (46%), Gaps = 23/292 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +++ L IER L TL +Y+ D + ++ + TI + F+ + Sbjct: 15 FVEVLSIERNLGVKTLYAYKNDVDNMVKWIDMRGYSDLDADTI-------MMYFLYLQNE 67 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI-LNMRNLKKSNSLPRALNEKQALTLVD 139 ++ RS++R I+ + +L K E + R + +LP+ L++ + +L+ Sbjct: 68 IELSPRSIRRKYVSIRQYCDFLNKEFDMNEIFFKFSSRKFQIPKNLPKVLSKAEIQSLIS 127 Query: 140 NVLLH----TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 +V +S + + RN I+ LL+ GLRI E ++ ++ + ++ I GKG Sbjct: 128 SVSAEFQSVSSEYHRRLCIRNMCIIELLFCLGLRIGEIAAMDVEDYNREDCSVLIHGKGK 187 Query: 196 KIRIV----PLL-PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 K R++ P++ + IL ++ P D +F G L+ + + Sbjct: 188 KERMLFISSPIVCQKLNNWILTRQEMSPADS------AMFVNKSGGRLSIFSIENIYYKY 241 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 R + +T H LRHSFAT LL+NG ++R +Q ++GH + TTQIYT V+ Sbjct: 242 RELSQINPHSTPHYLRHSFATQLLNNGANIRDVQELMGHNSIVTTQIYTEVS 293 >gi|116621640|ref|YP_823796.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116224802|gb|ABJ83511.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 336 Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 81/314 (25%), Positives = 136/314 (43%), Gaps = 24/314 (7%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF---ISKRRTQKIG 84 +R S T+ +Y R FL F+A + + ++ L+ ++ AF I K R + Sbjct: 24 QRNASHRTILAYRDAWRLFLRFVAQRRNKPVAALSLEHLTGADVLAFLQYIEKERRASVN 83 Query: 85 DRSLKRSLSGIKSFLKYL---KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 R+ + L+ ++SF ++ + R + +L + K + R L + + Sbjct: 84 TRNCR--LAALRSFFSFVVEHEPRVALQCAEVLRVPFKKATRRATRYLESVEV-----SA 136 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIV 200 +L T R+ A+L LLY G RI EAL L PQ++ + +R+ GKG K RI Sbjct: 137 ILSQPDRTTVGGQRDHALLSLLYNTGARIQEALDLRPQDVYFKSPAHVRLMGKGRKERIS 196 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 P+ P + P + P+F PL F+ +RQ + T Sbjct: 197 PIWPETANLVTALIRRQPRKPDE----PIFVNRYRSPLTASGFRFRLRQYVEAAAKTVPT 252 Query: 261 ------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 T H RHS A HL++ G D+ I+S LGH +L TT Y N + + ++ Sbjct: 253 ISRKRVTPHVFRHSTAVHLVAAGVDVTVIRSWLGHAQLDTTNHYAQANLETKRKALEQVD 312 Query: 315 DQTHPSITQKDKKN 328 + P+ + K++ Sbjct: 313 PKLRPAKPPRWKRD 326 >gi|205320825|gb|ACI02940.1| TnpF [uncultured bacterium HH1107] Length = 221 Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 63/191 (32%), Positives = 95/191 (49%), Gaps = 25/191 (13%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 KK +LP ++E++ + ++ + + ++ AIL +Y GLRISE ++L + Sbjct: 38 KKEKTLPVVMSEEETIRVLRAIE----------NVKHKAILMTIYSAGLRISECINLKIK 87 Query: 180 NIMDDQSTLRI-QGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234 +I + +RI Q KG + R L L +R +EY P D LF G + Sbjct: 88 DIDSKRMQIRIEQSKGKRDRYTILSEKTLIILRTYFMEY---KPKDY-------LFEGQK 137 Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 G + Q + + T HTLRHSFATHLL NG LR IQS+LGH T Sbjct: 138 GGAYSSRSIQNIFKAAVLKAKIQKEVTVHTLRHSFATHLLENGTSLRYIQSLLGHSSSKT 197 Query: 295 TQIYTNVNSKN 305 T++YT++ +K Sbjct: 198 TEVYTHITTKG 208 >gi|253755098|ref|YP_003028238.1| integrase [Streptococcus suis BM407] gi|251817562|emb|CAZ55309.1| integrase [Streptococcus suis BM407] Length = 295 Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 84/299 (28%), Positives = 143/299 (47%), Gaps = 46/299 (15%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 N+L + + LS TL++Y+ D QF + + + I I L+++ ++ Sbjct: 8 NYLDYCKAHKRLSTHTLRAYKNDLMQF-----YNSNNECVISYIEGLTHSNLKT------ 56 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTLV 138 +L+R ++ +K F YL+ + + T++ +R + +LP+ ++ Sbjct: 57 ------STLRRKIASLKVFYGYLQLKNVITDNPFNQLRFQFRAEKTLPKTISH------- 103 Query: 139 DNV-LLHTSHETKWIDA----------RNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 D++ +L+T + K I A RN I+ LL G+RISE + ++I + T Sbjct: 104 DSLKILYTYLQKKMISAKTIYQKQKAERNLLIVSLLLSTGIRISELCHIQIKDINLTEQT 163 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 L+I GKG K R++ + +L+ Y C + + P GK L + ++ + Sbjct: 164 LQILGKGKKERMIFIGDERTFQLLKAYITCYCNHTDDYLFP------GKSLQKPLTEQSV 217 Query: 248 RQL----RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 R L + L + T H RHSFAT LL N D+R IQ ILGH +S TQIYT+V+ Sbjct: 218 RLLLKTAKTQTRLTTTITPHMFRHSFATMLLDNDVDIRYIQQILGHSSISITQIYTHVS 276 >gi|317477593|ref|ZP_07936813.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|316906241|gb|EFV27975.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 348 Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 16/204 (7%) Query: 99 LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158 +K+ ++ + E + K+ +LP L++++ ++D + D R Sbjct: 138 IKFYYEKVLGQERRCYKVNRAKREKTLPDVLSKEEIKKILDVTV---------TDLRFFC 188 Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC 217 + +LY GLRISE L L P +I + +S +R+ QGKG K R L + K + EY L Sbjct: 189 MFSILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRYTLLSRPLMKKLTEYNRL- 247 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 ++ LF G+P + + ++ R G+ H LRHSFATHLL G Sbjct: 248 -----YKPKVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFATHLLEQG 302 Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301 D++ ++ ++GH + TT+ Y ++ Sbjct: 303 TDIKIVKELMGHNNIKTTERYVHI 326 >gi|295133148|ref|YP_003583824.1| tyrosine type site-specific recombinase [Zunongwangia profunda SM-A87] gi|294981163|gb|ADF51628.1| tyrosine type site-specific recombinase [Zunongwangia profunda SM-A87] Length = 375 Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 77/292 (26%), Positives = 135/292 (46%), Gaps = 31/292 (10%) Query: 20 NWLQNLEIERG--------LSKLTLQSYECDT-RQFLIFLAFYTEEKITIQTIRQLSYTE 70 +W +N +I G L KL L+ Y T + ++ F + + + I L E Sbjct: 92 SWFRNRDIPGGYRRCPENYLLKLELKRYSVSTIKTYVTFFEKFINH-YSQRDIDSLDECE 150 Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 IR F+ + + + ++++ IK + + + +M ++ + LP+ ++ Sbjct: 151 IRLFLQSLIQENKSNSYINQAINAIKFNYEVV----CGMPNRFYDMERPRREHRLPQVIS 206 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 ++ +++N + ++ I+ LLY GLR SE L+L Q+I + ++I Sbjct: 207 REEIFAIIENTN----------NIKHRCIVELLYSSGLRRSELLNLKLQDIDSKRMLIKI 256 Query: 191 Q-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 + GKG+K R L + +YY ++ LF G GK + + ++ Sbjct: 257 KAGKGNKDRFTILSEKCLAHLRQYYR------KWKPEIYLFEGQPGKQYSGASVLKVVKN 310 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 L + + H LRHSFATHLL +G DLR IQ +LGH TT+IYT+V Sbjct: 311 ASSKAKLNKNISPHILRHSFATHLLESGVDLRKIQVLLGHGSTKTTEIYTHV 362 >gi|315506755|ref|YP_004085642.1| tyrosine recombinase xerd [Micromonospora sp. L5] gi|315413374|gb|ADU11491.1| tyrosine recombinase XerD [Micromonospora sp. L5] Length = 323 Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 83/164 (50%), Gaps = 10/164 (6%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFD 220 LYG G RISEA+ ++ D T+ ++GKG + R+VP+ A+ + P Sbjct: 161 FLYGTGARISEAVGAAVDDLDLDAGTVLLRGKGGRTRLVPVGGYAADALRAWLVRGRPAL 220 Query: 221 LNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL----STTAHTLRHSFATHLLS 275 L +F RG PL +R GLP+ + + HTLRHS+ATHLL Sbjct: 221 LAAGRGTHAVFVNARGGPLTRQGAWAVLRTAAARAGLPVDGPDAVSPHTLRHSYATHLLD 280 Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 G D+R +Q +LGH ++TTQ+YT V + + E+Y HP Sbjct: 281 GGADVRVVQELLGHASVTTTQVYTLVTVER----LREVYATAHP 320 >gi|302866903|ref|YP_003835540.1| tyrosine recombinase XerD [Micromonospora aurantiaca ATCC 27029] gi|302569762|gb|ADL45964.1| tyrosine recombinase XerD [Micromonospora aurantiaca ATCC 27029] Length = 323 Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 83/164 (50%), Gaps = 10/164 (6%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFD 220 LYG G RISEA+ ++ D T+ ++GKG + R+VP+ A+ + P Sbjct: 161 FLYGTGARISEAVGAAVDDLDLDAGTVLLRGKGGRTRLVPVGGYAADALRAWLVRGRPAL 220 Query: 221 LNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL----STTAHTLRHSFATHLLS 275 L +F RG PL +R GLP+ + + HTLRHS+ATHLL Sbjct: 221 LAAGRGTHAVFVNARGGPLTRQGAWAVLRTAAARAGLPVDGPDAVSPHTLRHSYATHLLD 280 Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 G D+R +Q +LGH ++TTQ+YT V + + E+Y HP Sbjct: 281 GGADVRVVQELLGHASVTTTQVYTLVTVER----LREVYATAHP 320 >gi|326391735|ref|ZP_08213258.1| tyrosine recombinase XerD [Thermoanaerobacter ethanolicus JW 200] gi|325992235|gb|EGD50704.1| tyrosine recombinase XerD [Thermoanaerobacter ethanolicus JW 200] Length = 290 Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 81/299 (27%), Positives = 140/299 (46%), Gaps = 19/299 (6%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L L + LSK TL+SY D QFL +L E I +++ + ++ K+ Sbjct: 9 FLDFLTKNKKLSKNTLESYNRDINQFLNYLE---EIGINCYNVKKSTILNYLYYLKKKGK 65 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + ++ R+LS +K+F YL +K E + K P L +Q + Sbjct: 66 SQA---TVSRNLSSLKAFYHYLFMKKKIEEDPTYMINTPKVEKKPPTTLTVEQV-----D 117 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 +LL R+ A++ LLY GL++SE +SL +++ + I + +K R++ Sbjct: 118 MLLSLDFGDDEKGLRDKALIELLYATGLKVSEVISLKLEDVNLSYGYVVI--RSNKERVI 175 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 P+ +A+ Y + N + LF +RG+ L + IR+ + Sbjct: 176 PIGSHAIEALKNYIE--KGRKAKNGENTLFLNLRGQKLTRQGCWKIIREYTDKINPGFPV 233 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T +TLR SFA H+L NG D+R++Q +LG+ T + TN+ S + E+Y++ HP Sbjct: 234 TPNTLRQSFAQHMLQNGADIRAVQEMLGY----QTDLNTNLLSLISKSKIKEVYNKFHP 288 >gi|291515144|emb|CBK64354.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 372 Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 16/204 (7%) Query: 99 LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158 +K+ ++ + E + K+ +LP L++++ ++D + D R Sbjct: 162 IKFYYEKVLGQERRCYKVNRAKREKTLPDVLSKEEIKKILDVTV---------TDLRFFC 212 Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC 217 + +LY GLRISE L L P +I + +S +R+ QGKG K R L + K + EY L Sbjct: 213 MFSILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRYTLLSRPLMKKLTEYNRL- 271 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 ++ LF G+P + + ++ R G+ H LRHSFATHLL G Sbjct: 272 -----YKPKVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFATHLLEQG 326 Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301 D++ ++ ++GH + TT+ Y ++ Sbjct: 327 TDIKIVKELMGHNNIKTTERYVHI 350 >gi|262393940|ref|YP_003285794.1| integron integrase IntI4 [Vibrio sp. Ex25] gi|262337534|gb|ACY51329.1| integron integrase IntI4 [Vibrio sp. Ex25] Length = 320 Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 62/194 (31%), Positives = 87/194 (44%), Gaps = 38/194 (19%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL-------- 202 ID R + LLYG GLR+ E L L Q+I D +R+ QGKG K R V L Sbjct: 118 IDPRYKLHIQLLYGSGLRVMECLRLRVQDIDYDYGAVRVWQGKGGKNRTVTLAKELHEPL 177 Query: 203 ----------------LPS-----VRKAILEYYDLCPFDLNLNIQLPLFR--------GI 233 +P + + + Y D N + P + + Sbjct: 178 KAQVNLARDYYFKDRHMPGYAGVYISEGLRRKYPKAELDFNWHFLFPSTKLSTDRDTGEL 237 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R +N QR +++ + + T HTLRHSFATHLL +G D+R++Q LGH + Sbjct: 238 RRHHINESAIQRAVKRAATDACIEKTVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVK 297 Query: 294 TTQIYTNVNSKNGG 307 TTQIYT+V + G Sbjct: 298 TTQIYTHVIERGAG 311 >gi|320321496|gb|EFW77605.1| hypothetical protein PsgB076_27145 [Pseudomonas syringae pv. glycinea str. B076] Length = 319 Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 76/290 (26%), Positives = 134/290 (46%), Gaps = 31/290 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W N++ R T ++Y+ D F F+ ++ R ++ + A+ ++ T Sbjct: 32 WFANIDNPR-----TRRAYQNDLEDFCSFVGLTGADEF-----RAVTRAHVLAWRAQLET 81 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN---MRNLKKSNSLPRALNEKQALTL 137 + + +++R L+ + S +L + N ++ ++ + AL + QA L Sbjct: 82 RGLAGATIRRKLAALASLFDHLLENNAVAGGNPVHGVKRPKIETNEGKTPALGDDQAKRL 141 Query: 138 VDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194 +D + +T+ + R+ AIL +L GLR EA LT ++++ + LR+ GKG Sbjct: 142 LD------APDTETVKGVRDRAILAVLLYHGLRREEAARLTTSDLVERRGIKHLRVHGKG 195 Query: 195 DKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGV----FQRYIRQ 249 KIR +PL P + I Y +L D + PLFR +RGK GV + Sbjct: 196 KKIRFLPLHPVAAERIYAYLELDSARDTSSG---PLFRSVRGKTTGAGVTANGLYTVVAH 252 Query: 250 LRRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 R G+ + H LR + AT+ L + D+ +Q LGH +STT++Y Sbjct: 253 WARVAGIEVDGLGVHGLRATAATNALDHDADIAKVQMWLGHANISTTRLY 302 >gi|260438241|ref|ZP_05792057.1| tyrosine recombinase XerD [Butyrivibrio crossotus DSM 2876] gi|292809434|gb|EFF68639.1| tyrosine recombinase XerD [Butyrivibrio crossotus DSM 2876] Length = 306 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 73/298 (24%), Positives = 137/298 (45%), Gaps = 17/298 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + ++ + ++ L + TL +Y+ D +QF +++ +I ++ + +IS Sbjct: 9 EEYISFCQYQKRLDRKTLNAYKTDLKQF--------SQQLHSISIEAVTPDMLENYISHL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTL 137 Q +++KR ++ +K+F YLK ++I + + ++ LP+ + + T Sbjct: 61 H-QSYKSKTVKRKIASLKAFFHYLKYKEIIDRNPFDKIHVKFREPVILPKTIPLRTVETF 119 Query: 138 VDNVLLHTSHETKWIDARNS----AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 + + + RN+ A++ LL+ G+RISE SL ++ T+ I GK Sbjct: 120 LATIYHQRNCAKTTYQRRNAIRDIAVIELLFSTGIRISELCSLNVNDVNLQDGTILIYGK 179 Query: 194 GDKIRIVPL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 G K R + + V +LEY + + + F G+ L+ +R I + Sbjct: 180 GSKERCMHIGNDKVLSVLLEYKQ--EYSIEIQNCKHFFVNQSGRFLSDQAVRRMINKYSA 237 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 + L T H RH+FAT LL D+R IQ +LGH ++ T+IYT+V D + Sbjct: 238 LAAIELHITPHMFRHTFATCLLEADVDIRYIQEMLGHSSINITEIYTHVAMSKKKDIL 295 >gi|111225141|ref|YP_715935.1| tyrosine recombinase [Frankia alni ACN14a] gi|111152673|emb|CAJ64414.1| Tyrosine recombinase [Frankia alni ACN14a] Length = 355 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 86/184 (46%), Gaps = 41/184 (22%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R++ +L LLYG G+R+SE L +I D++ LR+ GKG + R VP Sbjct: 192 RDALVLELLYGSGVRVSELCGLDLGDIDDERRLLRVLGKGGRERSVP------------- 238 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPL-------------------NPGVFQRYIRQLRRYLG 255 F + L +R G+PL +P +R + + Sbjct: 239 ----FGVPAAGALRAWR-TSGRPLLAAPQSGSALLLGQLGGRLDPRTVRRVLARCVELGI 293 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 +P T H LRHS ATH+L G DLRS+Q LGH L+TTQIYT+V + + ++ Sbjct: 294 VPPGLTPHGLRHSAATHMLEGGADLRSVQEFLGHASLATTQIYTHVTPER----LRAAFE 349 Query: 316 QTHP 319 Q HP Sbjct: 350 QAHP 353 >gi|88803782|ref|ZP_01119305.1| tyrosine type site-specific recombinase [Polaribacter irgensii 23-P] gi|88780310|gb|EAR11492.1| tyrosine type site-specific recombinase [Polaribacter irgensii 23-P] Length = 374 Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 89/302 (29%), Positives = 136/302 (45%), Gaps = 44/302 (14%) Query: 6 LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65 +PE+ ++ K ++ WL ++ LSK T+ +Y T ++ + + +++T+ Sbjct: 95 IPELYMTDVRKFKK-WL----FQKRLSKNTVHTYVTVTATYIRYALLKKADLFSMKTVAA 149 Query: 66 LSYTEIRAFISKR----RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121 +Y I F+ + + Q IG GI+ F Y K E I R KK Sbjct: 150 FNYDSI--FVPNKSISYQNQFIG---------GIQKFFAY--KGYAYEEIPIERPRKEKK 196 Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 LP L+ + + + + ++ A+L LLY GLRI EA++L +I Sbjct: 197 ---LPIILSGAEIKAIFSTI----------TNLKHKALLSLLYSAGLRIGEAITLEVTDI 243 Query: 182 MDDQSTLRI--QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239 D Q L Q KG K R L P K + +YY + + LF G G + Sbjct: 244 -DCQRMLIYGRQAKGKKDRYTLLSPVFLKILRDYY------VAYRPKNSLFEGANGSTYS 296 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 Q+ ++ G+ T H+LRHSFATHLL G D+R IQ +LGH TT IYT Sbjct: 297 DASAQKVLKNALFKAGIRKKATLHSLRHSFATHLLEKGTDIRYIQELLGHSSPKTTMIYT 356 Query: 300 NV 301 +V Sbjct: 357 HV 358 >gi|304440179|ref|ZP_07400069.1| tyrosine recombinase XerC [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371228|gb|EFM24844.1| tyrosine recombinase XerC [Peptoniphilus duerdenii ATCC BAA-1640] Length = 321 Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 87/317 (27%), Positives = 155/317 (48%), Gaps = 32/317 (10%) Query: 9 IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIF-----LAFYTEE------- 56 +++F LL ++L L RGLS T+ Y D + FL++ L F T+E Sbjct: 2 VMNFTLL---DDFLGYLVSTRGLSMNTVNGYYYDLKNFLVYIVARKLNFDTKELDDRYLE 58 Query: 57 KITIQTIRQLSYTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE---SN 112 K+++ I+ ++ +I A+ S T+K ++ R S I++F YL + E S+ Sbjct: 59 KMSLDLIKTVNKQDIYAYNSYLVHTKKNKMNAVSRKNSAIRTFFNYLTSKINVLEVDPSS 118 Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRI 170 L+M ++++ +P AL+ +A + + + ++ +R+ I CG+R+ Sbjct: 119 DLDMPKVRRT--IPTALSLDEAKRFLKTIEDFNYNGKNNDFLKSRDFCIATFFLNCGMRL 176 Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PL 229 SE + ++ DD +T++I GKG+K R + L + A+ Y + P ++ L Sbjct: 177 SELCGINMFDLEDD-NTIKILGKGNKERSIYLNKACIHALDNYLEFRP-----EVESKAL 230 Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGG-DLRSIQSIL 287 F + P Q I + GL P + H LRH+ AT + G D+RS+Q +L Sbjct: 231 FLSRNKARITPRAVQMMIDKYIVMSGLDPDKYSVHKLRHTAATLMYQYGDVDIRSLQKVL 290 Query: 288 GHFRLSTTQIYTNVNSK 304 GH + TT+IYT+V+ + Sbjct: 291 GHESVQTTEIYTHVSDE 307 >gi|254228151|ref|ZP_04921580.1| integron integrase subfamily [Vibrio sp. Ex25] gi|151939224|gb|EDN58053.1| integron integrase subfamily [Vibrio sp. Ex25] Length = 335 Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 62/194 (31%), Positives = 87/194 (44%), Gaps = 38/194 (19%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL-------- 202 ID R + LLYG GLR+ E L L Q+I D +R+ QGKG K R V L Sbjct: 133 IDPRYKLHIQLLYGSGLRVMECLRLRVQDIDYDYGAVRVWQGKGGKNRTVTLAKELHEPL 192 Query: 203 ----------------LPS-----VRKAILEYYDLCPFDLNLNIQLPLFR--------GI 233 +P + + + Y D N + P + + Sbjct: 193 KAQVNLARDYYFKDRHMPGYAGVYISEGLRRKYPKAELDFNWHFLFPSTKLSTDRDTGEL 252 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R +N QR +++ + + T HTLRHSFATHLL +G D+R++Q LGH + Sbjct: 253 RRHHINESAIQRAVKRAATDACIEKTVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVK 312 Query: 294 TTQIYTNVNSKNGG 307 TTQIYT+V + G Sbjct: 313 TTQIYTHVIERGAG 326 >gi|116254508|ref|YP_770344.1| putative phage integrase protein [Rhizobium leguminosarum bv. viciae 3841] gi|115259156|emb|CAK10271.1| putative phage integrase protein [Rhizobium leguminosarum bv. viciae 3841] Length = 303 Score = 89.0 bits (219), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 107/225 (47%), Gaps = 21/225 (9%) Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 +K+ S+ ++S ++ K +R E +L + KK LP L+ + + Sbjct: 70 KKLAPSSIHTAISALRFLYKVTLERDWVPE-EVLPLP--KKPQKLPIILSPDEVQHFLGC 126 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRI 199 VL D ++ AIL Y GLRISEA+ L P +I + +R+ QGKG K R Sbjct: 127 VL----------DPKHHAILTTCYAAGLRISEAVQLKPTDIDSQRMVVRVEQGKGQKDRY 176 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPL 258 V L P + + + +Y+ + + LF G R G+P+ + L Sbjct: 177 VMLSPKLLEILRDYWKM------RRPKAWLFPGDRAGQPITRDAVGEACAKAHNLSRLSK 230 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 T H+LRH+FA HLL G D+R+IQ +LGH L+TT Y + + Sbjct: 231 PVTPHSLRHAFAVHLLEAGADVRTIQLLLGHRSLATTAHYLRIAT 275 >gi|148642488|ref|YP_001273001.1| phage integrase family integrase/recombinase [Methanobrevibacter smithii ATCC 35061] gi|148551505|gb|ABQ86633.1| integrase-recombinase protein, phage integrase family [Methanobrevibacter smithii ATCC 35061] Length = 302 Score = 89.0 bits (219), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 60/183 (32%), Positives = 94/183 (51%), Gaps = 9/183 (4%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKW---IDARNSAILYLLYGCGLRISEALSL 176 K+ S P L +K+ L+D++ + ++ + R+ I+ LLY GLR+SE ++L Sbjct: 121 KRIKSPPNFLTQKEVKQLLDSITWDENSDSDFRIITKLRDKLIVTLLYSSGLRVSELINL 180 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 + N+ + L I GK + R++ L S ++ I +Y + N L G Sbjct: 181 SVDNVNFEGKQLSIVGKNNS-RVILLDESTKQLIQKYLEKRTQKSNY-----LVVNKSGN 234 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 PL P Q I++ G+ T H LRHS+ATHL G +++ IQ +LGH LSTTQ Sbjct: 235 PLTPRYVQLMIKKYGNESGIEKKITPHILRHSYATHLFEQGVNIKIIQQLLGHSNLSTTQ 294 Query: 297 IYT 299 IY+ Sbjct: 295 IYS 297 >gi|20807762|ref|NP_622933.1| integrase [Thermoanaerobacter tengcongensis MB4] gi|34222924|sp|Q8RAB1|XERDL_THETN RecName: Full=Tyrosine recombinase xerD-like protein gi|20516317|gb|AAM24537.1| Integrase [Thermoanaerobacter tengcongensis MB4] Length = 290 Score = 89.0 bits (219), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 84/303 (27%), Positives = 142/303 (46%), Gaps = 27/303 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ L+ + LSK TL+SY D QFL ++ E I + ++ + F+ + Sbjct: 9 FLEFLKKNKRLSKNTLESYSRDVEQFLTYM---NEHGINFCSAKKSTIVNYLYFL---KQ 62 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q ++ R+LS IK+F YL +K E + K P L +Q + Sbjct: 63 QGKSQATISRALSSIKAFYHYLFAKKKIEEDPSYGINAPKVEKKEPVTLTVEQV-----D 117 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 +LL R+ A++ L+Y GL++SE +SL +++ + ++ I + K R++ Sbjct: 118 MLLSFDFGKDEKGLRDKALIELMYASGLKVSEVISLKIEDV--NLASGYIVVRSGKERVI 175 Query: 201 PLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL--GL 256 P+ A+ EY + P + LF +RGK L + I++ + GL Sbjct: 176 PIGSYAVAALQEYIEKGRKP----RKGEKALFLNLRGKRLTRQGCWKIIKEYADKISPGL 231 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 PL T + LR SFA H+L NG DL+++Q +LG+ N+ S M E+Y++ Sbjct: 232 PL--TPNILRKSFAQHMLQNGADLKTVQEMLGY----EVNFGNNLLSLVSRSKMKEVYNK 285 Query: 317 THP 319 HP Sbjct: 286 FHP 288 >gi|169826674|ref|YP_001696832.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41] gi|168991162|gb|ACA38702.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41] Length = 277 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 76/274 (27%), Positives = 129/274 (47%), Gaps = 34/274 (12%) Query: 31 LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90 S T++SY+ QF ++E + +R +IR +++ + + RS++ Sbjct: 17 FSSETIRSYKISLSQF------FSESEKNYDEVRA---KDIRNWLATLSEKGLKIRSIQL 67 Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150 L+ +KSF +Y + + ++ K + LP LN++Q L E Sbjct: 68 KLTALKSFYQYCIEENKINHNPTKKVKTPKSEDLLPYYLNKRQLALL---------QELT 118 Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKA 209 + R AI+ +LY G+RI+E L++ ++I D + I +GKG+K R V Sbjct: 119 KDNLRERAIVEVLYATGVRINELLNIKLEDIKWDTRQIWIRKGKGNKDRFVLFSHECALR 178 Query: 210 ILEY----YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + Y Y+ F LF RGK ++ + Q + R+ + LG + T HTL Sbjct: 179 LKNYLHVRYENSDF---------LFSSPRGKHISCDLVQLFFRKYSKELGFKV--TPHTL 227 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 RH+FA HL G + IQ +LGH +++T+IYT Sbjct: 228 RHTFAAHLAEKGMEFIYIQDLLGHANINSTRIYT 261 >gi|300872273|gb|ADK38964.1| IntI4 [Vibrio sp. V4(2010)] Length = 290 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/188 (32%), Positives = 90/188 (47%), Gaps = 38/188 (20%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206 +D ++ + LLYG GLR+ E + L Q+I D +RI QGKG K R V L P + Sbjct: 95 VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 154 Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233 ++ I YYD P++ + P F+ + Sbjct: 155 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 214 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R +N V Q+ +R+ + G+ + T HTLRHSFATHLL G D+R++Q LGH + Sbjct: 215 RRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVK 274 Query: 294 TTQIYTNV 301 TT YT+V Sbjct: 275 TTTNYTHV 282 >gi|254167351|ref|ZP_04874203.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] gi|197623614|gb|EDY36177.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] Length = 279 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 120/250 (48%), Gaps = 33/250 (13%) Query: 72 RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPRA 128 + ++S +R K SL + I+S+ KY N+ +NL K+ +P+ Sbjct: 55 KMYLSTKR--KYSKNSLYLATKAIRSYFKY---------KNLDTAKNLSSPKRPKQMPKY 103 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 L+E + L+ E + R+ AI+ LL GLR+SE +L +++ ++ + Sbjct: 104 LSEDEVKRLI---------EASSENPRDYAIISLLAYSGLRVSELCNLKIEDVDFNERIV 154 Query: 189 RIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 ++ GKGDK RIV + P V +A+ Y D+ LF + ++ R + Sbjct: 155 YVRSGKGDKDRIVVVSPRVIEALQNYLYTREDDMEY-----LFASQKSNKISRVQVFRIV 209 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 ++ G+ T H LRH+ AT LL G D+R IQ LGH ++TTQIYT+V+ Sbjct: 210 KKYAEKAGIKKEVTPHVLRHTLATTLLRRGVDIRFIQQFLGHSSVATTQIYTHVDDA--- 266 Query: 308 DWMMEIYDQT 317 + +YD+ Sbjct: 267 -LLKSVYDKV 275 >gi|218128919|ref|ZP_03457723.1| hypothetical protein BACEGG_00491 [Bacteroides eggerthii DSM 20697] gi|217988882|gb|EEC55199.1| hypothetical protein BACEGG_00491 [Bacteroides eggerthii DSM 20697] Length = 350 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 82/308 (26%), Positives = 148/308 (48%), Gaps = 29/308 (9%) Query: 21 WLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA---FIS 76 W + L I RG S T +SY Q++ FL E+K+T T+ SY++ + Sbjct: 18 WFTSYLPIARGCSSHTQRSYFTALSQYMQFLQ--EEKKVTPNTLSAESYSKSNLNDWLLW 75 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 ++T+K + + LSG+KSF+K+L + I + ++ + +K ++ + ++E+ Sbjct: 76 LKKTRKCSNSTCNDRLSGVKSFIKFLSIKDIRFNAVYISSKEIKPMRTV-KVIHEEITQK 134 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----MDDQSTLRIQG 192 + ++ +T+ R+ AI YL+Y G RI E LS+ ++ + + L I G Sbjct: 135 AIKSLFSTIRTDTR-TGKRDLAIFYLIYSIGARIDEILSVKICDLHLHEYPNPNYLTIIG 193 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLC---PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 KG K R P+L V K +L Y ++ F + + + G + K + +R Sbjct: 194 KGYKCRTPPILKDVTKILLRYIEVFHNNDFASHSYLFYSFYNGEKKKISQEAINKR---- 249 Query: 250 LRRYLG--------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ--IYT 299 L+ Y +P + H+LRH+ A+H L G ++ +IQ ++GH + TT I+ Sbjct: 250 LKMYAAKANEIDKCVPRNLHCHSLRHARASHWLEQGLNIIAIQRLMGHADIRTTMRYIFV 309 Query: 300 NVNSKNGG 307 +V KN Sbjct: 310 SVEQKNKA 317 >gi|218709877|ref|YP_002417498.1| Site-specific recombinase IntIA [Vibrio splendidus LGP32] gi|218322896|emb|CAV19073.1| Site-specific recombinase IntIA [Vibrio splendidus LGP32] Length = 324 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/178 (34%), Positives = 88/178 (49%), Gaps = 38/178 (21%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI-------LEY 213 L+YG GLR+ E L L Q+I D ++R+ QGKG K RIV + P + +I EY Sbjct: 129 LMYGSGLRLMECLRLRMQDIDYDYKSVRVWQGKGGKNRIVTIAPELFPSIKLQQQKSAEY 188 Query: 214 YDLCPFDLNLN-IQLP------------------LFRGIRGKP-----------LNPGVF 243 Y D + + LP LF R P ++P Sbjct: 189 YQQDIHDKAFSGVYLPDSLAKKYPSAERSLNWQFLFPSARLAPDLRTGELRRHHIHPTAL 248 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 Q++I+ + + + + HTLRHSFATHLL +G D+R++Q LGH L TTQIYT++ Sbjct: 249 QKHIKVASQKADIEKNISCHTLRHSFATHLLQSGADIRTVQEQLGHTDLKTTQIYTHI 306 >gi|269958271|ref|YP_003328058.1| tyrosine recombinase [Anaplasma centrale str. Israel] gi|269848100|gb|ACZ48744.1| tyrosine recombinase [Anaplasma centrale str. Israel] Length = 312 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 86/312 (27%), Positives = 137/312 (43%), Gaps = 29/312 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ L R +S T SY D FL + S ++RA++ + Sbjct: 10 FLEYLVSGRCVSPNTSSSYRSDLEDLAEFLGRRNLRMV------DASAADLRAYVRSLNS 63 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + ++ R ++ I+ +L +I N+ + K LP+ L + VD Sbjct: 64 RGYSPATISRRVAAIRGLYGFLYGDRIIDGDPAANLDSCKLGRPLPKVLTVDE----VDK 119 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-------MDDQSTLRIQGK 193 +L + R +AI+ +LY G+RISE ++L +I D L I+GK Sbjct: 120 LLRAAGSDLSVEGRRTAAIVNILYSSGVRISELINLGFYDIESMLKEQRSDVGHLVIKGK 179 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRR 252 + R++ L +I+ Y L D + Q R + G + + ++ + QL + Sbjct: 180 AGRERLILLNEVAIASIVAY--LAVRDHFIVGQKSESRWLFPGAKFDQCISRQRVGQLLK 237 Query: 253 YLGL-----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 L + P + H LRHSFATHLL+NG ++ IQ +LGH LSTTQIYT V Sbjct: 238 ALAIVAGVDPKRISPHKLRHSFATHLLNNGSNVVFIQKMLGHASLSTTQIYTYV----AN 293 Query: 308 DWMMEIYDQTHP 319 D + E HP Sbjct: 294 DRLKEALQTFHP 305 >gi|289596337|ref|YP_003483033.1| integrase family protein [Aciduliprofundum boonei T469] gi|289534124|gb|ADD08471.1| integrase family protein [Aciduliprofundum boonei T469] Length = 284 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 119/250 (47%), Gaps = 33/250 (13%) Query: 72 RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPRA 128 + ++S +R K SL + I+S+ KY N+ +NL K+ +P+ Sbjct: 60 KMYLSTKR--KYSKNSLYLATKAIRSYFKY---------KNLDTAKNLSSPKRPRQMPKY 108 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 L+E + L+ E + R+ AI+ LL GLR+SE +L +++ ++ + Sbjct: 109 LSEDEVKRLI---------EASSENPRDYAIISLLAYSGLRVSELCNLKIEDVDFNERIV 159 Query: 189 RIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 + GKGDK RIV + P V +A+ Y D+ LF + ++ R + Sbjct: 160 YVHSGKGDKDRIVVVSPRVIEALQNYLYTREDDMEY-----LFASQKSNKISRVQVFRIV 214 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 ++ G+ T H LRH+ AT LL G D+R IQ LGH ++TTQIYT+V+ Sbjct: 215 KKYAEKAGIKKEVTPHVLRHTLATTLLRRGVDIRFIQQFLGHSSVATTQIYTHVDDA--- 271 Query: 308 DWMMEIYDQT 317 + +YD+ Sbjct: 272 -LLKSVYDKV 280 >gi|110802806|ref|YP_698501.1| site-specific tyrosine recombinase XerC [Clostridium perfringens SM101] gi|110683307|gb|ABG86677.1| site-specific recombinase, phage integrase family [Clostridium perfringens SM101] Length = 450 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 87/307 (28%), Positives = 149/307 (48%), Gaps = 34/307 (11%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT--EEKITIQTIRQLSYTEIR----- 72 N+L+N+ +G S T + Y D F FL Y E I ++ I ++ +++ Sbjct: 141 NYLENV---KGKSLNTAKGYSVDLGLFFKFLKVYKGLENNIELEKIEEVEISDLGDNFIK 197 Query: 73 -----------AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLK 120 AF+ K R R+ R ++ +KSF K+L + K+ E+ + + + K Sbjct: 198 DITLSDIYAFLAFLEKVRNNSAYARA--RKVATLKSFFKFLNSKIKLIDENPTVELESPK 255 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 + P L Q++T++++ ++ S++ + R+ IL L CG+R+SE ++ + Sbjct: 256 INKRHPVYLTLDQSITVLNS--MNKSNKNYY---RDYCILTLFLNCGMRLSELCNIEIEK 310 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLN 239 I D TL I GKG+K R V L + AI Y + + LF + +P+N Sbjct: 311 IKGD--TLTIIGKGNKERTVYLNEASIAAIENYLKNRNDSKATEEAKKYLFLSSKYRPIN 368 Query: 240 PGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQI 297 + +++ G T H LRH+ AT + G D+RS+Q+ILGH +STTQI Sbjct: 369 KRSVEILVKKHIENAGFKDQKYTPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTTQI 428 Query: 298 YTNVNSK 304 YT+V+ + Sbjct: 429 YTHVDDE 435 >gi|260892612|ref|YP_003238709.1| integrase family protein [Ammonifex degensii KC4] gi|260864753|gb|ACX51859.1| integrase family protein [Ammonifex degensii KC4] Length = 285 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 75/278 (26%), Positives = 133/278 (47%), Gaps = 29/278 (10%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 + RGLS T + Y R+F +L I +++ ++ ++ +R Q+ G + Sbjct: 15 LSRGLSPGTAEVYLGHVRRFFGWLG--------CADITEVTPFDVASY--RRHLQEKGRK 64 Query: 87 --SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 ++ +L+ + SF + K+ + + +R + + PR L +++ + V H Sbjct: 65 PATVNNALNALSSFFSWAKEAGLVSSDPTEGVRQVPEDRPAPRWLGKRELGRFLRAVQKH 124 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPL 202 S R+ A++ LL GLR+SEA+SL ++++ + +R++GKG K R VPL Sbjct: 125 GS-------PRDRALVALLLHAGLRVSEAVSLRLEDVVIRERSGFVRVRGKGGKYREVPL 177 Query: 203 LPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 +VR+ + EY +L P + LF G G+ L ++ +L R G+ T Sbjct: 178 NVTVRRVLKEYLAELPPQEGGW-----LFPGKGGEYLTRFAVEKLFARLSRLSGV--EVT 230 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 H LRH+F L+ G L + + GH L+TT YT Sbjct: 231 PHRLRHTFCKWLIDAGESLDKVALLAGHSNLNTTARYT 268 >gi|254166742|ref|ZP_04873596.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] gi|197624352|gb|EDY36913.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] Length = 279 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 119/250 (47%), Gaps = 33/250 (13%) Query: 72 RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPRA 128 + ++S +R K SL + I+S+ KY N+ +NL K+ +P+ Sbjct: 55 KMYLSTKR--KYSKNSLYLATKAIRSYFKY---------KNLDTAKNLSSPKRPRQMPKY 103 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 L+E + L+ E + R+ AI+ LL GLR+SE +L +++ ++ + Sbjct: 104 LSEDEVKRLI---------EASSENPRDYAIISLLAYSGLRVSELCNLKIEDVDFNERIV 154 Query: 189 RIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 + GKGDK RIV + P V +A+ Y D+ LF + ++ R + Sbjct: 155 YVHSGKGDKDRIVVVSPRVIEALQNYLYTREDDMEY-----LFASQKSNKISRVQVFRIV 209 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 ++ G+ T H LRH+ AT LL G D+R IQ LGH ++TTQIYT+V+ Sbjct: 210 KKYAEKAGIKKEVTPHVLRHTLATTLLRRGVDIRFIQQFLGHSSVATTQIYTHVDDA--- 266 Query: 308 DWMMEIYDQT 317 + +YD+ Sbjct: 267 -LLKSVYDKV 275 >gi|116252427|ref|YP_768265.1| integrase/recombinase protein [Rhizobium leguminosarum bv. viciae 3841] gi|116255538|ref|YP_771371.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257075|emb|CAK08169.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv. viciae 3841] gi|115260186|emb|CAK03290.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv. viciae 3841] Length = 292 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 107/225 (47%), Gaps = 21/225 (9%) Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 +K+ S+ ++S ++ K +R E +L + KK LP L+ + + Sbjct: 59 KKLAPSSIHTAISALRFLYKVTLERDWVPE-EVLPLP--KKPQKLPIILSPDEVQHFLGC 115 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRI 199 VL D ++ AIL Y GLRISEA+ L P +I + +R+ QGKG K R Sbjct: 116 VL----------DPKHHAILTTCYAAGLRISEAVQLKPTDIDSQRMVVRVEQGKGQKDRY 165 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPL 258 V L P + + + +Y+ + + LF G R G+P+ + L Sbjct: 166 VMLSPKLLEILRDYWKM------RRPKAWLFPGDRAGQPITRDAVGEACAKAHNLSRLSK 219 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 T H+LRH+FA HLL G D+R+IQ +LGH L+TT Y + + Sbjct: 220 PVTPHSLRHAFAVHLLEAGADVRTIQLLLGHRSLATTAHYLRIAT 264 >gi|332522659|ref|ZP_08398911.1| phage integrase, N-terminal SAM domain protein [Streptococcus porcinus str. Jelinkova 176] gi|332313923|gb|EGJ26908.1| phage integrase, N-terminal SAM domain protein [Streptococcus porcinus str. Jelinkova 176] Length = 295 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 82/290 (28%), Positives = 131/290 (45%), Gaps = 30/290 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L + + LS TL++Y+ D QF ++ + I L+ + I+ Sbjct: 9 YLDYCKTHKRLSSHTLRAYKNDLIQFC-----NSDHDCVVSYIEYLTNSAIKT------- 56 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTLV- 138 +L+R ++ +K F YL + I +E+ +R + +LP+ + L Sbjct: 57 -----NTLRRKIASLKVFYSYLMTQNIISENPFNQLRFQFRTEKTLPKIIPHNILKNLYA 111 Query: 139 ---DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 V+ ++ + RN I+ +L G+RISE + +NI TL I GKG Sbjct: 112 YLKQKVITSKTNFQRQKAERNLLIVSILLSTGIRISELCHIQIKNINLQNQTLHIFGKGK 171 Query: 196 KIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRR 252 K RI+ L +L+ Y + C LF G PL + ++ +R+ Sbjct: 172 KERIIFLGDETTVLLLKTYLANYCN-----QSDKYLFPGKFSQNPLTEQSVRLVLKTVRK 226 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + L + T H RHSFAT LL N D+R IQ ILGH +S TQIYT+V+ Sbjct: 227 QMNLATTITPHMFRHSFATMLLDNDVDIRYIQQILGHSSISITQIYTHVS 276 >gi|325511227|gb|ADZ22862.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum EA 2018] Length = 326 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 110/223 (49%), Gaps = 15/223 (6%) Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNI---LNMRNLKKSNSLPRALNEKQALTLVDN 140 G S R ++ I+SF YL +K + N L L K N P L QA T + Sbjct: 87 GAYSRARKVAAIRSFFNYLTTKKKILDYNPAQELEKPKLPKRN--PVYLTIGQANTFLSG 144 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + ++ + RN+ I+ L CG+R+SE ++ +I +D + I GKGDK R V Sbjct: 145 IKMNKHY------YRNTCIVTLFLNCGMRVSELCNININSIKNDM--ISIIGKGDKERTV 196 Query: 201 PLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 L AI +Y + N+ Q LF +G ++ + ++++ L ++ Sbjct: 197 YLNDMCIDAINKYIEKERSLQKNIKCQQALFISQKGTRISVRTIENLVKKINEDSKLNIN 256 Query: 260 T-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T H LRH+FAT + G D+ S+Q +LGH +STTQIYT+V Sbjct: 257 KLTPHKLRHTFATTMYQAGTDIISLQQLLGHSNVSTTQIYTHV 299 >gi|299148759|ref|ZP_07041821.1| integrase/recombinase [Bacteroides sp. 3_1_23] gi|301311646|ref|ZP_07217572.1| integrase/recombinase [Bacteroides sp. 20_3] gi|15072728|emb|CAC47935.1| TpnF protein [Bacteroides thetaiotaomicron] gi|298513520|gb|EFI37407.1| integrase/recombinase [Bacteroides sp. 3_1_23] gi|300830387|gb|EFK61031.1| integrase/recombinase [Bacteroides sp. 20_3] Length = 279 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 75/274 (27%), Positives = 136/274 (49%), Gaps = 27/274 (9%) Query: 33 KLTLQSYECDT-RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRSLKR 90 +L +Q Y +T R + + + + + ++ ++ ++I AFI+++ + KI K Sbjct: 13 RLLMQRYAGNTIRSYKDYASIFLKHVSKYPSLEEIPLSDIEAFINEKVQNGKISVSYQKG 72 Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQALTLVDNVLLHTSHET 149 + IK + + +KI L+ K+S S LP+ ++++ ++DN Sbjct: 73 LVGAIKKMYELILDKKIQ-----LDYLYPKRSFSKLPKFFSKEEVRNILDNTQ------- 120 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRK 208 + ++ AIL +Y CGLR+SE L+L ++I +RI Q KG+K RIV L + Sbjct: 121 ---NLKHKAILMTIYSCGLRLSELLNLKIKDIKSSDGIIRIHQSKGNKDRIVSLPDKLLA 177 Query: 209 AILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 + YY P + LF G +G + Q +++ + + HT RH Sbjct: 178 TLRHYYQAFKPKEY-------LFEGEKGGKYSERSVQLILKKALIKANVQSEGSVHTGRH 230 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 S+ATHL+ +G D+R ++ +LGH + TT IYT++ Sbjct: 231 SYATHLIQSGIDIRIVKELLGHENIKTTMIYTHI 264 >gi|332308719|ref|YP_004436569.1| integrase family protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332176048|gb|AEE25301.1| integrase family protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 286 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 118/245 (48%), Gaps = 36/245 (14%) Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 E+R F Q + ++ +LSG LK+L + + +L + + LP L Sbjct: 54 ELRQFQLALAEQGASNITINATLSG----LKFLFHKTLNLLDVMLKVSTVPVPRKLPTVL 109 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 ++++ L+D +H K+ A + A YG GLRI E ++L +I + LR Sbjct: 110 SKEEVKQLID-----ATHTIKYKAAFSVA-----YGAGLRIGEVVALKVTDIDSSRMLLR 159 Query: 190 I-QGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNP-GVFQRY 246 I QGKG K R+ LL + + ++Y L LN LF G PLNP G Sbjct: 160 IEQGKGKKDRMAMLLTT----LCQWYKHAKAHHLMLNGGW-LFPG--QNPLNPIGT---- 208 Query: 247 IRQLRRY-------LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 RQL R GL + HTLRHSFA HLL + D+R IQ++LGH +L TT +Y Sbjct: 209 -RQLSRAWKSACIDAGLTKKVSMHTLRHSFAMHLLEDKVDIRVIQTLLGHSKLETTALYA 267 Query: 300 NVNSK 304 V SK Sbjct: 268 QVASK 272 >gi|15004784|ref|NP_149244.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum ATCC 824] gi|14994396|gb|AAK76826.1|AE001438_79 Site-Specific Recombinase, Xerd [Clostridium acetobutylicum ATCC 824] Length = 323 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 110/223 (49%), Gaps = 15/223 (6%) Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNI---LNMRNLKKSNSLPRALNEKQALTLVDN 140 G S R ++ I+SF YL +K + N L L K N P L QA T + Sbjct: 84 GAYSRARKVAAIRSFFNYLTTKKKILDYNPAQELEKPKLPKRN--PVYLTIGQANTFLSG 141 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + ++ + RN+ I+ L CG+R+SE ++ +I +D + I GKGDK R V Sbjct: 142 IKMNKHY------YRNTCIVTLFLNCGMRVSELCNININSIKNDM--ISIIGKGDKERTV 193 Query: 201 PLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 L AI +Y + N+ Q LF +G ++ + ++++ L ++ Sbjct: 194 YLNDMCIDAINKYIEKERSLQKNIKCQQALFISQKGTRISVRTIENLVKKINEDSKLNIN 253 Query: 260 T-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T H LRH+FAT + G D+ S+Q +LGH +STTQIYT+V Sbjct: 254 KLTPHKLRHTFATTMYQAGTDIISLQQLLGHSNVSTTQIYTHV 296 >gi|194396828|ref|YP_002037966.1| integrase [Streptococcus pneumoniae G54] gi|307127259|ref|YP_003879290.1| tyrosine recombinase [Streptococcus pneumoniae 670-6B] gi|194356495|gb|ACF54943.1| integrase [Streptococcus pneumoniae G54] gi|295980935|emb|CBJ57183.1| hypothetical protein [Streptococcus pneumoniae] gi|306484321|gb|ADM91190.1| tyrosine recombinase [Streptococcus pneumoniae 670-6B] Length = 298 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 87/291 (29%), Positives = 135/291 (46%), Gaps = 32/291 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L + + LS T+++Y+ D QF +Y + ++I + Sbjct: 9 YLDYCKTHKRLSSHTIRAYKNDLMQFY-----------------NSNYDNVESYIEELTQ 51 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNE---KQALT 136 I +L+R ++ IK F YLK + I E+ +R + LP+ + K + Sbjct: 52 SNIKTNTLRRKIACIKVFYNYLKYQHIIEENPFNQLRFQFRTEKILPKTIPYDILKNIFS 111 Query: 137 LVDN-VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 ++ V++ + K RN I+ LL G+RISE + ++I TL I GKG Sbjct: 112 YLEQRVVISKTDYQKQKAERNLLIISLLLSTGIRISELCHIHLKDINLSNKTLHIIGKGK 171 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRG-KPLNPGVFQRYIRQLR 251 K RI+ L +LE Y +N N + LF G KPL+ + ++++ Sbjct: 172 KERILFLGDQTTFNLLETY------INKNGKESNDFLFPGKHSPKPLSEQSVRLILKRIV 225 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 GL + T H RHSFAT LL N D+R IQ ILGH +S TQIYT+V+ Sbjct: 226 EQNGLSKTITPHMFRHSFATMLLDNDVDIRYIQQILGHSSISITQIYTHVS 276 >gi|15894453|ref|NP_347802.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum ATCC 824] gi|15024091|gb|AAK79142.1|AE007632_7 Integrase/recombinase (xerD/xerC family) [Clostridium acetobutylicum ATCC 824] gi|325508584|gb|ADZ20220.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum EA 2018] Length = 299 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 74/245 (30%), Positives = 125/245 (51%), Gaps = 18/245 (7%) Query: 66 LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES--NILNMRNLKK-S 122 + Y EI+ FI+ +++R + +K F +YL + KI ++ + ++ R+L K Sbjct: 52 IDYREIKKFINYLIKNGRAATTIRRKIISLKLFFQYLDQEKIVLDNPFDKIDKRDLPKIP 111 Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 LP++L+ ++ L+++V S T R+ I+ + G+R+SE +SL NI+ Sbjct: 112 KRLPKSLSIEECKRLINSV---NSRNT----IRDKCIIIIFLSTGMRLSELISLNVDNIL 164 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242 +++ +RI GK +K R+V L +K + Y P +L LF R + G Sbjct: 165 EEE--IRIIGKENKERVVYLTDQAKKIVKLYIKQRPKNLKTK---ALFLSERNGRIARGT 219 Query: 243 FQRYIRQLRRYLGLPLSTTA--HTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYT 299 Q IR G+ H LRH+FAT L +G DL +Q +LGH +STT+IYT Sbjct: 220 VQNAIRNAMYNAGIKGDNDVLVHILRHTFATLLYQSGEVDLFQLQELLGHEDVSTTRIYT 279 Query: 300 NVNSK 304 +V+ + Sbjct: 280 DVSKE 284 >gi|227499531|ref|ZP_03929638.1| possible tyrosine recombinase XerC [Anaerococcus tetradius ATCC 35098] gi|227218410|gb|EEI83661.1| possible tyrosine recombinase XerC [Anaerococcus tetradius ATCC 35098] Length = 329 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 88/323 (27%), Positives = 162/323 (50%), Gaps = 32/323 (9%) Query: 6 LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTR---QFLIFLAFYT------EE 56 + EI+S +L + N+L+++ RGLS T++ Y D +F++ Y +E Sbjct: 1 MKEIISPIILTDYLNYLKSI---RGLSSNTIREYNYDLNLMIRFMLVRKIYYGDFERFDE 57 Query: 57 KITIQTIRQ---------LSYTEIRAFISKRRTQKIGDRSLK-RSLSGIKSFLKYLKKRK 106 + ++I + LS + +++S K S + R +S I+SF KYL Sbjct: 58 QFDPESINKIVDPKFFETLSLQDFYSYLSYLDNDKSDLASTRSRKISAIRSFYKYLFSEI 117 Query: 107 ITTESNILN-MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165 ++NI + + N K S P L ++ L++ V + +++ R+ AI++ Sbjct: 118 EVIDTNISDKLTNPKISQRQPVYLTLQETEKLLETV---KGEQNEFLKCRDLAIIFTFLT 174 Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLN 224 G+R+SE +S+ ++I +D I GKG+K R + L + I +Y ++ + N++ Sbjct: 175 TGMRLSELVSVNLRDISNDH--FNIIGKGNKERTIYLTSNCIDLIEKYIEVRGKYVKNID 232 Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG-DLRS 282 I LF R K ++ Q I + + G +S + H LRH+ AT + G D+R+ Sbjct: 233 ID-ALFISTRKKRISNRAVQSTIDKYLKKAGFDVSVYSTHKLRHTAATLMYKYGNVDIRA 291 Query: 283 IQSILGHFRLSTTQIYTNVNSKN 305 ++ ILGH +STTQIYT+++ ++ Sbjct: 292 LKDILGHANVSTTQIYTHLDDED 314 >gi|304404723|ref|ZP_07386384.1| integrase family protein [Paenibacillus curdlanolyticus YK9] gi|304346530|gb|EFM12363.1| integrase family protein [Paenibacillus curdlanolyticus YK9] Length = 307 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 90/307 (29%), Positives = 144/307 (46%), Gaps = 40/307 (13%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W+++ RG SK T Q Y D I L + + +IR++ ++ + ++ R Sbjct: 16 WMKD----RGYSKDTQQGYLND-----IQLLCRSLRGKPLPSIRKI---DVMSHLTDARE 63 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK-KSNSLPRALNEKQALTLVD 139 + GD + R+LS I+ F K + + + + ++ K + N LP L E L+ Sbjct: 64 RGAGDGARNRALSAIRLFFKVMIEFERMEHNPAADVSKSKVEKNRLPLYLEESYLGDLLR 123 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 +V R+ A+L L+ CGLR+SE L Q+ + L I GKG K R Sbjct: 124 SV-------EGNFRVRDIAMLALMSYCGLRVSEVSQLNLQDFDPEAGQLSILGKGRKWRY 176 Query: 200 VPLLPSV----RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN--------PGVFQRYI 247 +PL PS+ ++ + E + P N + P F G+ ++ F+++ Sbjct: 177 IPLQPSIITLLKQCLQER--IPPKRKN---EHPFFVSRLGRRISRRTVQFIVERTFEQFK 231 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNSKNG 306 +Q S AH LRHSFAT+LLS DLR++Q +LGH +STTQIYT++ K Sbjct: 232 QQHEHMAERKFS--AHKLRHSFATNLLSTDKVDLRTLQELLGHADISTTQIYTHITDKKK 289 Query: 307 GDWMMEI 313 M + Sbjct: 290 KQAMAAV 296 >gi|198275042|ref|ZP_03207574.1| hypothetical protein BACPLE_01201 [Bacteroides plebeius DSM 17135] gi|198272489|gb|EDY96758.1| hypothetical protein BACPLE_01201 [Bacteroides plebeius DSM 17135] Length = 372 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 16/204 (7%) Query: 99 LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158 +K+ ++ + E + K+ +LP L++++ ++D + D R Sbjct: 162 IKFYYEKVLGQERRCYKVNRAKREKTLPDVLSKEEIKKILDATV---------TDLRFFC 212 Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC 217 + +LY GLRISE L L P +I + +S +R+ QGKG K R L + K + EY L Sbjct: 213 MFSILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRYTLLSKPLMKKLTEYNRL- 271 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 ++ LF G+P + + ++ R G+ H LRHSFA HLL G Sbjct: 272 -----YKPKVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFAPHLLEQG 326 Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301 D++ ++ ++GH + TT+ Y ++ Sbjct: 327 TDIKIVKELMGHNNIKTTERYVHI 350 >gi|254994614|ref|ZP_05276804.1| integrase/recombinase [Anaplasma marginale str. Mississippi] Length = 267 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 77/266 (28%), Positives = 123/266 (46%), Gaps = 23/266 (8%) Query: 67 SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126 S ++RA++ ++ ++ R +S I+ +L +I N+ + K LP Sbjct: 5 SAADLRAYVRSLNSRGYSPATVARRISAIRGLYGFLYGDRIIDGDPAANLDSCKLGRPLP 64 Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----- 181 + L + VD +L + R +AI+ +LY G+RISE ++L +I Sbjct: 65 KVLTVDE----VDKLLCAAGSDLSVEGRRTAAIVNILYSSGVRISELINLGFYDIESMLK 120 Query: 182 --MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPL 238 D L I+GK + R++ L +I+ Y L D + Q R + G Sbjct: 121 EQRSDVGHLVIKGKAGRERLILLNEVAIASIVAY--LAVRDHFIVGQKSESRWLFPGAKF 178 Query: 239 NPGVFQRYIRQLRRYLGL-----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 + + ++ + QL + L + P + H LRHSFATHLL+NG ++ IQ +LGH LS Sbjct: 179 DQCISRQRVGQLLKALAIVAGVDPKRISPHKLRHSFATHLLNNGSNVVFIQKMLGHASLS 238 Query: 294 TTQIYTNVNSKNGGDWMMEIYDQTHP 319 TTQIYT V D + E HP Sbjct: 239 TTQIYTYV----ANDRLKEALQTFHP 260 >gi|254518744|ref|ZP_05130800.1| phage integrase [Clostridium sp. 7_2_43FAA] gi|226912493|gb|EEH97694.1| phage integrase [Clostridium sp. 7_2_43FAA] Length = 292 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 70/294 (23%), Positives = 137/294 (46%), Gaps = 27/294 (9%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 S+ T+ +Y D ++ +L K +I + + +I +Q +RS+ R Sbjct: 18 SENTVYAYVTDVNLYVKYL------KSKNMSIDETDNVSVLGYIQYLLSQGKSERSINRI 71 Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 + ++SF YLK +K+ +E + +N + LP L + VD ++ K Sbjct: 72 VISLRSFYNYLKDQKVVSEIPKIYYKNTTTTKKLPEIL----TIDEVDRII-------KI 120 Query: 152 IDA------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 +D R++A+L L+Y G+++SE + L +I + + ++ + R++P+ S Sbjct: 121 VDKDCNKGIRDNALLELMYATGMKVSEIIGLNVYDINLELNFVKCHDNKNYERLIPIGRS 180 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 +A+ EY + + ++ LF + G L R +++ G+ +T Sbjct: 181 ATEALKEYLKIRDQVASAGVE-TLFVNLNGNHLTRQGVWRIVKEYSHKAGIKKEVNLNTF 239 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 RHSFA HLL NG ++R++Q +LG+ L+ Y + + D + +Y +HP Sbjct: 240 RHSFAVHLLQNGANVRAVQKLLGNQVLTYMDTYYEIIN---NDKINIVYKNSHP 290 >gi|12831419|gb|AAK02076.1| site-specific recombinase IntIA [Vibrio parahaemolyticus] Length = 320 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 88/322 (27%), Positives = 138/322 (42%), Gaps = 65/322 (20%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISKRRTQKIGD 85 + R + T++SY ++F++F K++ IR LS+ I +K+ Sbjct: 14 LTRHYANKTIESYLFWIKRFIVFHQLAHPSKLSEDDVIRFLSHLAI--------DEKVAV 65 Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV--DNVLL 143 ++ +L+ I + K ++ L+MR ++L EK+ ++ D V Sbjct: 66 KTQALALNAISFLYRDFFKTPLS-----LDMR-------FQKSLTEKKLPVVLTRDEVRR 113 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL 202 H ID R + LLYG GLRI E L L Q+I D +R+ QGKG K R V L Sbjct: 114 FVQH----IDPRYKLHIQLLYGSGLRIMECLRLRIQDIDYDYGAVRVWQGKGGKNRTVTL 169 Query: 203 ------------------------LPS-----VRKAILEYYDLCPFDLNLNIQLPLFR-- 231 +P + + + Y D N + P + Sbjct: 170 AKELHEPLKSQMNLARNYYFKDRHVPGYAGVYISEGLRRKYPNAELDFNWHFLFPSNKLS 229 Query: 232 ------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285 +R +N QR +++ + + T HTLRHSFATHLL +G D+R++Q Sbjct: 230 VDKETGQLRRHHINESAIQRAVKRSALDANIEKTVTCHTLRHSFATHLLESGADIRTVQE 289 Query: 286 ILGHFRLSTTQIYTNVNSKNGG 307 LGH + TTQIYT+V + G Sbjct: 290 QLGHTDVKTTQIYTHVIERGAG 311 >gi|167754200|ref|ZP_02426327.1| hypothetical protein ALIPUT_02493 [Alistipes putredinis DSM 17216] gi|167658825|gb|EDS02955.1| hypothetical protein ALIPUT_02493 [Alistipes putredinis DSM 17216] Length = 372 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 16/204 (7%) Query: 99 LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158 +K+ ++ + E + K+ +LP L++++ ++D + D R Sbjct: 162 IKFYYEKVLGQERRCYKVNRAKREKTLPDVLSKEEIKKILDVTV---------TDLRFFC 212 Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC 217 + +LY GLRISE L L P +I + +S +R+ QGKG K R L + K + EY L Sbjct: 213 MFSILYSAGLRISELLELKPGDINEPRSLIRVRQGKGKKDRYTLLSKPLMKKLTEYNRL- 271 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 ++ LF G+P + + ++ R G+ H LRHSFATHLL G Sbjct: 272 -----YKPKVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFATHLLEQG 326 Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301 D++ ++ ++GH + TT+ Y ++ Sbjct: 327 IDIKIVKELMGHNNIKTTERYVHI 350 >gi|110799420|ref|YP_695812.1| site-specific tyrosine recombinase XerC [Clostridium perfringens ATCC 13124] gi|110674067|gb|ABG83054.1| site-specific recombinase, phage integrase family [Clostridium perfringens ATCC 13124] Length = 450 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 88/307 (28%), Positives = 147/307 (47%), Gaps = 34/307 (11%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT--EEKITIQTIRQLSYTEIR----- 72 N+L+N+ +G S T++ Y D F FL Y E I ++ I ++ +++ Sbjct: 141 NYLENV---KGKSVNTIKGYSVDLGLFFKFLKVYKGLENNIELEKIEEVEISDLGDNFIK 197 Query: 73 -----------AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLK 120 AF+ K R R+ R ++ +KSF K+L + K+ E+ + + + K Sbjct: 198 DITLSDIYAFLAFLEKVRNNSAYARA--RKVATLKSFFKFLNSKIKLIDENPTVELESPK 255 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 + P L Q++T+++++ E K R+ IL L CG+R+SE ++ + Sbjct: 256 INKRHPVYLTLDQSITVLNSM----DKENKNY-YRDYCILTLFLNCGMRLSELCNIEIEK 310 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLN 239 I D TL I GKG+K R V L + AI Y + + LF + +P+N Sbjct: 311 IKGD--TLTIIGKGNKERTVYLNEASIAAIENYLKNRNDSKATEEAKKYLFLSSKYRPIN 368 Query: 240 PGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQI 297 + +++ G T H LRH+ AT + G D+RS+Q+ILGH +STTQI Sbjct: 369 KRSVEILVKKHIENAGFKDQKYTPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTTQI 428 Query: 298 YTNVNSK 304 YT+V+ + Sbjct: 429 YTHVDDE 435 >gi|310827797|ref|YP_003960154.1| phage integrase [Eubacterium limosum KIST612] gi|308739531|gb|ADO37191.1| phage integrase [Eubacterium limosum KIST612] Length = 320 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 82/292 (28%), Positives = 144/292 (49%), Gaps = 33/292 (11%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTE-------------EKITIQTIRQLSYTEIRAFI 75 RG S TL SY D QF FL + + + ++ I+Q++ +I AF+ Sbjct: 20 RGFSPNTLISYRNDLMQFFRFLKVRFQLADPDAEFDTISIDDVDLKVIKQVTLPDIYAFL 79 Query: 76 SKRRTQKIG-DRSLKRSLSGIKSFLKYLK---KRKITTESNILNMRNLKKSNSLPRALNE 131 S +++ D + KR + IK+ YL K+ + L + +K + P L Sbjct: 80 SYATSKRSNIDSTRKRKTAAIKNLYHYLTTVIDTKMDDPTQRLEIPKVKSRD--PVYLTL 137 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 +AL+L++ V + ++ + R+ AI+ L CG+R+SE +L ++I + T+ I Sbjct: 138 DEALSLLNAV------DGEFYE-RDLAIITLFLNCGIRLSELTNLKIEDIQ--EETIHIV 188 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 GKG+K R + L + + + Y + P D ++ +F R PL+ Q +++ Sbjct: 189 GKGNKERNIRLNDACVETLEAYMAVRPEDTDVPY---VFLSKRKTPLSNRTVQSMVKKYV 245 Query: 252 RYLGLPLS-TTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNV 301 GL + H LRH+ AT + G D+R++Q +LGH +STT+IYT++ Sbjct: 246 LKAGLNADKISVHKLRHTAATLMHKYGQVDIRTLQKVLGHESISTTEIYTHI 297 >gi|283798528|ref|ZP_06347681.1| integrase/recombinase XerD [Clostridium sp. M62/1] gi|291073790|gb|EFE11154.1| integrase/recombinase XerD [Clostridium sp. M62/1] gi|295090134|emb|CBK76241.1| tyrosine recombinase XerD subunit [Clostridium cf. saccharolyticum K10] Length = 287 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 131/287 (45%), Gaps = 12/287 (4%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 + E + ++ L + +S+ T+ SY D QF ++A + +++ T + + Sbjct: 1 MFDEVEKFVGYLRDVKKMSQNTILSYRRDLLQFASYMA-----DRGVAEAGKVTKTSLDS 55 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 +I + ++ R L+ IK+F Y + +R K P L+ ++ Sbjct: 56 YILFLEREGKAAATISRMLASIKAFFHYESTEGYIKRNPAEMIRAPKIEKKAPSILSVEE 115 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L++ T E R+ A+L LLY G+R+SE ++L +I + Sbjct: 116 VTRLLNQPGGRTPKEI-----RDKAMLELLYATGIRVSELMNLNLHHINMTIGFITCSDS 170 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRR 252 G + R +P +KA+ +Y +L + LF G ++ F + I+ Sbjct: 171 GRE-RTIPFGRVAKKALDDYLKNSRPELTKKKESDWLFVNCSGGQMSRQGFWKIIKYYGE 229 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 G+ T HTLRHSFA HL+S+G D++++Q ILGH ++TTQ+Y Sbjct: 230 KAGIQTDITPHTLRHSFAAHLISSGADMKAVQQILGHSDMATTQMYA 276 >gi|269127047|ref|YP_003300417.1| integrase family protein [Thermomonospora curvata DSM 43183] gi|268312005|gb|ACY98379.1| integrase family protein [Thermomonospora curvata DSM 43183] Length = 314 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 83/319 (26%), Positives = 143/319 (44%), Gaps = 44/319 (13%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +L +RGL+ TL SY D R++ L E+ I +++ ++ +++ R Sbjct: 14 YLAHLAADRGLAANTLSSYRRDLRRYAQAL----RERGRC-AIGEVTEADVLGYLAGLRE 68 Query: 81 -----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 + + DRS R+++ ++ ++ + + +R P+A++ + Sbjct: 69 GDAAHRPLSDRSAARAVAAVRGLHRFAVREGLAAADPAAGVRPPASPKRRPKAISVAE-- 126 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 V+ +L + E R+ A+L LLYG G RISEA++L ++ +R+ GKG Sbjct: 127 --VERLLAAAASEGTPRGLRDRALLELLYGSGARISEAVALDVDDLDLKAGLIRLTGKGG 184 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLN-PGVFQ--RYIRQL 250 ++R VP+ R+A+ Y L + LF RG L+ G + R Q Sbjct: 185 RVRRVPVGEHARRAVEAYLRQARPHLAKDGTAGAALFLNARGGRLSRQGAWMVLRAAAQR 244 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 R +G+ + HTLRHSFATHLL G D + +LG NV+++ G Sbjct: 245 ARLVGV----SPHTLRHSFATHLLDGGADAGVVHQLLG-----------NVSAEQGRGGR 289 Query: 311 M----------EIYDQTHP 319 M E++ HP Sbjct: 290 MYALVTQGLLTEVHAMAHP 308 >gi|220683968|gb|ACL80790.1| IntIA [Vibrio tasmaniensis] Length = 324 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 62/178 (34%), Positives = 87/178 (48%), Gaps = 38/178 (21%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI-------LEY 213 L+YG GLR+ E L L Q+I D ++R+ QGKG K RIV + P + AI EY Sbjct: 129 LMYGSGLRLMECLRLRMQDIDYDYKSVRVWQGKGGKNRIVTIAPELFPAIKLQQQKSAEY 188 Query: 214 YDLCPFDLNLN-IQLP------------------LFRGIRGKP-----------LNPGVF 243 + D + + LP LF R P ++P Sbjct: 189 HQQDIHDEAFSGVYLPDSLAKKYPSAERSLNWQFLFPSARLAPDLRTGVLRRHHIHPTAL 248 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 Q++I+ + + + HTLRHSFATHLL +G D+R++Q LGH L TTQIYT++ Sbjct: 249 QKHIKVASQKADIEKDISCHTLRHSFATHLLQSGADIRTVQEQLGHADLKTTQIYTHI 306 >gi|91224344|ref|ZP_01259606.1| site-specific recombinase IntIA [Vibrio alginolyticus 12G01] gi|91190686|gb|EAS76953.1| site-specific recombinase IntIA [Vibrio alginolyticus 12G01] Length = 308 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 64/195 (32%), Positives = 88/195 (45%), Gaps = 41/195 (21%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL-------- 202 ID R + LLYG GLR+ E L L Q+I D +R+ QGKG K R V L Sbjct: 106 IDPRYRLHIQLLYGSGLRVMECLRLRVQDIDYDYGAVRVWQGKGGKNRTVTLAKELHEPL 165 Query: 203 ----------------LPS-----VRKAILEYYDLCPFDLNLNIQLPLFR--------GI 233 +P + + + Y D N + P + + Sbjct: 166 KAQVNLARNYYFKDRHMPGYAGVYISEGLRRKYPKAELDFNWHFLFPSTKLSADRDTGEL 225 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R +N QR +++ + + T HTLRHSFATHLL +G D+R++Q LGH + Sbjct: 226 RRHHINESAIQRAVKRAASDASIEKTVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVK 285 Query: 294 TTQIYT---NVNSKN 305 TTQIYT +VN KN Sbjct: 286 TTQIYTAAHHVNHKN 300 >gi|256854437|ref|ZP_05559801.1| predicted protein [Enterococcus faecalis T8] gi|256709997|gb|EEU25041.1| predicted protein [Enterococcus faecalis T8] gi|315029064|gb|EFT40996.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX4000] Length = 302 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 69/262 (26%), Positives = 131/262 (50%), Gaps = 18/262 (6%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 RG SK+T+++Y+ R F + I ++ Q+ +I+++I + +++ ++ Sbjct: 37 RGFSKITIKNYKSKLRNTANFF-----KSINVEP-SQIEKKQIKSWIIDMQEKEMQASTI 90 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE---KQALTLVDNVLLHT 145 S+S +K Y+ K + +++ LK+ + LN+ KQ LT+ Sbjct: 91 NVSVSRLKKLFDYMLIEKYIDYNPFVDIERLKEQRKVIYPLNDYEIKQMLTVA------K 144 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 H K I RN IL L+ CGLRISE + ++IM++Q +R + K +K R V + P Sbjct: 145 KHPYKHIAQRNVVILMLMIECGLRISEVCEIRDEDIMNNQIIIR-KSKNNKDRAVAVSPI 203 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAH 263 ++K I++Y + L P GK LN + ++++++ + + + + H Sbjct: 204 LKKEIIKYQRIKKRKFGLLEGNPFIVSNLGKKLNEKSIWQIMQEIKKQIDIRDCVRFSGH 263 Query: 264 TLRHSFATHLLSNGGDLRSIQS 285 TLRH++A+ L NG D+ ++ S Sbjct: 264 TLRHTYASMQLRNGLDIYTLSS 285 >gi|258543858|ref|ZP_05704092.1| tyrosine recombinase XerC [Cardiobacterium hominis ATCC 15826] gi|258520898|gb|EEV89757.1| tyrosine recombinase XerC [Cardiobacterium hominis ATCC 15826] Length = 301 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 87/311 (27%), Positives = 149/311 (47%), Gaps = 27/311 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR- 78 + L L ERG + TL +Y R+ L A E + + L +++ +++K Sbjct: 6 DHLAYLRYERGKAAQTLATY----RRLLYQFA----EAHRDRDLHALEPRDLQNYLTKTL 57 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 K +L + + ++S+ ++L + R + T+ + LP AL +Q TL Sbjct: 58 GGGKYSPATLNQHRAALRSYYRWLHRLRGLPTDPAAALKLPRQARQPLPDALTPEQITTL 117 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 ++ + I R+ IL L Y GLR++E SL +++ D I+GKG Sbjct: 118 LEAP---ATDNPNLI--RDHTILELFYSAGLRLAELASLDNRDLGPDSEHHIIRGKGGVE 172 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLG- 255 R++ + R+A+ + + L + LF G L G+ R L+ Y Sbjct: 173 RLIFIGSKAREALARWQTVRGQLLKKADEPALFLNKNGGRLTERGIALR----LKAYAAE 228 Query: 256 -LP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 LP ++ H LRH+FA+H+L + GDLRS+Q +LGH L+TTQIYT+++ ++ + Sbjct: 229 RLPGVNVHPHMLRHTFASHILQSSGDLRSVQELLGHKNLATTQIYTHLDYQH----LART 284 Query: 314 YDQTHPSITQK 324 YD+ HP +K Sbjct: 285 YDEKHPRAKKK 295 >gi|229546531|ref|ZP_04435256.1| integrase/recombinase [Enterococcus faecalis TX1322] gi|307277324|ref|ZP_07558423.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX2134] gi|307296545|ref|ZP_07576367.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0411] gi|229308343|gb|EEN74330.1| integrase/recombinase [Enterococcus faecalis TX1322] gi|306496018|gb|EFM65604.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0411] gi|306505991|gb|EFM75162.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX2134] gi|315157760|gb|EFU01777.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0312] Length = 302 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 69/262 (26%), Positives = 131/262 (50%), Gaps = 18/262 (6%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 RG SK+T+++Y+ R F + I ++ Q+ +I+++I + +++ ++ Sbjct: 37 RGFSKITIKNYKSKLRNTANFF-----KSINVEP-SQIEKKQIKSWIIDMQEKEMQASTI 90 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE---KQALTLVDNVLLHT 145 S+S +K Y+ K + +++ LK+ + LN+ KQ LT+ Sbjct: 91 NVSVSRLKKLFDYMLIEKYIDYNPFVDIERLKEQRKVIYPLNDYEIKQMLTVA------K 144 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 H K I RN IL L+ CGLRISE + ++IM++Q +R + K +K R V + P Sbjct: 145 KHPYKHIAQRNVVILMLMIECGLRISEVCEIRDEDIMNNQIIIR-KSKNNKDRAVAVSPI 203 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAH 263 ++K I++Y + L P GK LN + ++++++ + + + + H Sbjct: 204 LKKEIIKYQRIKKRKFGLLEGNPFIVSNLGKKLNEKSIWQIMQEIKKQIDIRDCVRFSGH 263 Query: 264 TLRHSFATHLLSNGGDLRSIQS 285 TLRH++A+ L NG D+ ++ S Sbjct: 264 TLRHTYASMQLRNGLDIYTLSS 285 >gi|294776403|ref|ZP_06741881.1| phage integrase, N-terminal SAM domain protein [Bacteroides vulgatus PC510] gi|294449729|gb|EFG18251.1| phage integrase, N-terminal SAM domain protein [Bacteroides vulgatus PC510] Length = 341 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 89/321 (27%), Positives = 153/321 (47%), Gaps = 36/321 (11%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFL---AFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L IE G+S+ T+ +Y + FL F +++T+ I + ++ + R Sbjct: 18 LPIECGVSQNTILTYSYTFSLLIEFLKEQEFINPQRVTLADITKERIINFLQWLEEDRHC 77 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITT---ESNILNMRNLKKSNSLPRALNEKQALTLV 138 + R+ + L+ I+SF YL+ R + I+++R KK + P + A + Sbjct: 78 SVSTRNAR--LAAIRSFYSYLQYRDVKGMFRYHEIMSIR--KKKTAAP-----EMAYLTI 128 Query: 139 DNVLLHTSH---ETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKG 194 D + L S +T++ R+ +L LLY G R+ E + LTP NI +D +T+++ GKG Sbjct: 129 DGIKLILSQPDLKTRY-GRRDFVLLSLLYDSGARVQELIDLTPPNIEFNDTATVKLCGKG 187 Query: 195 DKIRIVPLLPSVRKAILEY-YD--LCPFDLNLNIQLPLFRGIRGKPLNP----GVFQRYI 247 +K RIVPL + +Y YD L D + +P+F G+ L+ + ++Y Sbjct: 188 NKARIVPLSKQQASNLKKYMYDEGLMKEDRHC---VPIFCNFHGEKLSRVAVLNIVKKYA 244 Query: 248 RQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 R+ +P + H+ RHS A HLL +L I+ LGH +TT+IY + K Sbjct: 245 EIARKKSPDLIPENLGCHSFRHSKAMHLLEADINLVYIRDFLGHVSTTTTEIYARASEKK 304 Query: 306 GGDWMMEIYDQTHPSITQKDK 326 +E + +P I ++ K Sbjct: 305 K----LEALSRVNPGIIKEGK 321 >gi|312794237|ref|YP_004027160.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181377|gb|ADQ41547.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 290 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 77/294 (26%), Positives = 137/294 (46%), Gaps = 33/294 (11%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 LL+E + WL+ ++ ++ T+ +Y D FL + T E+ + T+ ++ Sbjct: 3 LLEEFEQWLRAID----HTQKTVINYVKDIELFLKWYEQTTGEEFRPSAYNEFVLTQYKS 58 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNE 131 ++ QK+ S+ R + ++ F +L + + N++ +K + N P AL++ Sbjct: 59 YMLT--VQKLKPSSVNRKIQALRKFGCFLVAKGYLQTNPAENLKQVKDVRDNLAPAALSK 116 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLR 189 + L V ++ R+ AI+ L GLR+SE +L ++I + + LR Sbjct: 117 QDVFRLRKTVYMYGK-------IRDIAIIELFLNTGLRLSELANLKIEDIEIGERKGKLR 169 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 + GKG K R +PL +RK + +Y + C F LF GKPL P Sbjct: 170 VLGKGRKYREIPLNSEIRKILSQYLEKRKHIDCDF---------LFTTSTGKPLQPNSIY 220 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 R +++ G+ L H LRH+FA L+ G ++ ++ +LGH +L TT Y Sbjct: 221 RLVKRYAERAGIELH--PHMLRHTFAQTLIDKGTNVFDVKYLLGHEKLETTMRY 272 >gi|298251414|ref|ZP_06975217.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297546006|gb|EFH79874.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 350 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 81/298 (27%), Positives = 137/298 (45%), Gaps = 45/298 (15%) Query: 49 FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKI 107 F A++ + + Q+ ++RA+ + R+ ++ ++ R LS ++ + ++++ Sbjct: 33 FCAWWEQMHQRPFDLTQVVERDLRAWKTVRQQEEGAAPATINRGLSTLRRLCTWAVEQQL 92 Query: 108 TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW-IDARNSAILYLLYGC 166 TE+ + ++ ++ + PR+L + VD +L T E + R+ A+L LL Sbjct: 93 LTENPVKDVADIPSTPVSPRSLPD----LAVDALLRATRAEPDLRLRLRDEALLALLVYA 148 Query: 167 GLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYD--LCPFDL-- 221 G+RI EA L +++ TL ++ GKG K R +P+ ++A+ Y CP L Sbjct: 149 GVRIQEACDLQLRDLDLASGTLVVRSGKGGKARRLPVHSEAQRALSRYLQEVRCPEGLPP 208 Query: 222 --NLNIQLPLF----RGIRGKPLNPGVFQRYIRQLRRYLG-------------------- 255 + + PL R + G+PL PG+ R RQ LG Sbjct: 209 IGSEQERTPLLVGMQRAVAGRPLAPGIKTRVARQRIAQLGKVAATQLEEAATRERDLARA 268 Query: 256 -------LPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 L L T A H LRHSFA +L G L +Q +LGH RLSTT IY + ++ Sbjct: 269 EQLRACVLQLETAAPHQLRHSFARRMLKTGAQLPEVQRMLGHSRLSTTGIYLTPSEED 326 >gi|317051491|ref|YP_004112607.1| integrase family protein [Desulfurispirillum indicum S5] gi|316946575|gb|ADU66051.1| integrase family protein [Desulfurispirillum indicum S5] Length = 330 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 79/286 (27%), Positives = 147/286 (51%), Gaps = 21/286 (7%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L+ E GLS+ T+ Y + R+FL FL +E++T++T E+R +++ + K Sbjct: 50 LKYECGLSQQTIDRYLFEMRRFLEFL---QQEELTVETA---GPRELRMYLTHKAMGK-S 102 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS--NSLPRAL--NEKQALTLVDN 140 + L +++ +L+ E+ ++++ K + N +P L +E++ L N Sbjct: 103 KSTYANVLCYVRAIFNWLQYEGFLEENPARDLKSPKGAYKNEMPVFLKDDEQKRLRAYLN 162 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 L E + + R++A++ + G+R SE LT +N +I KG K +I+ Sbjct: 163 GL-----ERNFHNDRDTAVMLCVLYTGMRASEICQLTRRNFHRQGKAFQITRKGQKEQIL 217 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV-FQRYIRQLRRY-LGLPL 258 P+ ++ + IL++Y D +++ F GKPL P + +QR ++ + LP Sbjct: 218 PIADALME-ILQFYWYEHMD-SIDSDF-FFCRTNGKPLTPYIIWQRTSLHIKAAGIDLPR 274 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 AH LRH+FAT+L+ G +L IQ +LGH ++ T+IYT+ + + Sbjct: 275 KRGAHLLRHTFATNLVRKGVNLIEIQRLLGHSHVAVTEIYTHTSPE 320 >gi|186471361|ref|YP_001862679.1| integrase family protein [Burkholderia phymatum STM815] gi|186474500|ref|YP_001863471.1| integrase family protein [Burkholderia phymatum STM815] gi|186474622|ref|YP_001863593.1| integrase family protein [Burkholderia phymatum STM815] gi|184197670|gb|ACC75633.1| integrase family protein [Burkholderia phymatum STM815] gi|184198459|gb|ACC76421.1| integrase family protein [Burkholderia phymatum STM815] gi|184198581|gb|ACC76543.1| integrase family protein [Burkholderia phymatum STM815] Length = 292 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 83/291 (28%), Positives = 131/291 (45%), Gaps = 33/291 (11%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF-IS 76 RQ L +++I R L++ T +SY F E L EIRA+ I Sbjct: 5 RQRMLHDMQI-RNLAENTQKSYLIQVSSFARHFRRSPE---------LLGPEEIRAWLIY 54 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 R +K+ SL ++ ++ + KR + E L +K LP L+ ++ T Sbjct: 55 LREERKLAPASLSPAIGALRFLYRVTLKRDWSDEDFPLP----RKPVRLPVVLSLEEITT 110 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGD 195 D++ ++ IL + Y GLR+SE + L +I + +R+ QGK Sbjct: 111 FFDSI----------PSLKHRTILMVAYAAGLRVSEVVHLKVTDIDSKRMVIRVNQGKNR 160 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYL 254 K R V L P + + + Y+ + + + LF G I G P+ G R R+ Sbjct: 161 KDRYVMLSPRLLEILRTYWQ------DAHPRGWLFPGDIPGHPITRGAVSRICALARQRC 214 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 G+ T H+LRH+FATHLL G D+R IQ ++GH L+TT Y + + Sbjct: 215 GIRKPITPHSLRHAFATHLLEAGTDVRRIQLLMGHRSLATTSRYLRIATST 265 >gi|212695142|ref|ZP_03303270.1| hypothetical protein BACDOR_04680 [Bacteroides dorei DSM 17855] gi|212662319|gb|EEB22893.1| hypothetical protein BACDOR_04680 [Bacteroides dorei DSM 17855] Length = 353 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 87/311 (27%), Positives = 141/311 (45%), Gaps = 57/311 (18%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK---ITIQTIRQLSYTEIRAFISKRRTQ 81 L ERGLS T++SY+ F++F+ F E+K + I+ ++ I AF+ +++ Sbjct: 34 LPCERGLSTNTIESYKT---TFILFITFMEEKKNIAVNKLAIKNITKENIIAFLEWLQSE 90 Query: 82 KIGDRSLKR-SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT---- 136 + + + L+ + SF +YL+ +P LNE Q + Sbjct: 91 RHCSTATRNVRLAALHSFFRYLQYE-------------------MPENLNEWQQILSIKA 131 Query: 137 -----------LVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-M 182 VD + LL ++ R+ A+L L+Y C R+ E + LTP I + Sbjct: 132 KKNIKKNVNYLTVDGIQLLLQQPDQSTKKGRRDLAMLSLMYDCAARVQEIIDLTPAMIRL 191 Query: 183 DDQSTLRIQGKGDKIRIVPLLPS----VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238 T+++ GKG+K RIVPL+ +++ ++E L N + PLF R + Sbjct: 192 TKPYTIKVIGKGNKPRIVPLMEKQVIHLKRYLVEN-KLLESHANFS---PLFSNSRNEKF 247 Query: 239 N----PGVFQRYIRQLR-RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 + Q Y R + L + H+LRHS A HLL G +L I+ ILGH + Sbjct: 248 TRQGIANILQTYANAARVKDSTLIPKLSPHSLRHSKAMHLLQAGVNLVYIRDILGHESVL 307 Query: 294 TTQIYTNVNSK 304 TT+IY +SK Sbjct: 308 TTEIYARTDSK 318 >gi|254510200|ref|ZP_05122267.1| phage integrase [Rhodobacteraceae bacterium KLH11] gi|221533911|gb|EEE36899.1| phage integrase [Rhodobacteraceae bacterium KLH11] Length = 295 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/149 (39%), Positives = 80/149 (53%), Gaps = 8/149 (5%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDL 216 A L + YG GLR SE +LT +I D+ + + QGKG K R V L P + + +Y+ Sbjct: 128 AALSISYGAGLRASEVCNLTTGDIDSDRMLIHVVQGKGRKDRKVMLSPDLLDLLRDYW-- 185 Query: 217 CPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275 C + LF G + P++P R +R G+ T HTLRHSFATHLL Sbjct: 186 C----EARPEGWLFPGKPKINPISPRQLNRAFTSAKRMAGINKPATLHTLRHSFATHLLE 241 Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 G D+R IQ +LGH +L+ T YT V +K Sbjct: 242 AGTDVRVIQVLLGHAKLTITAQYTKVATK 270 >gi|188587679|ref|YP_001921083.1| site-specific tyrosine recombinase XerC [Clostridium botulinum E3 str. Alaska E43] gi|188497960|gb|ACD51096.1| site-specific recombinase, phage integrase family [Clostridium botulinum E3 str. Alaska E43] Length = 329 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 89/309 (28%), Positives = 150/309 (48%), Gaps = 38/309 (12%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY----TEEKIT-------------IQT 62 ++L LE + S T+ +Y+ D F F+ Y ++KI +++ Sbjct: 19 DFLNYLETIKNKSSNTIAAYKKDLTIFFRFMKLYRGIVKDKKIEFEDIDITDIDDEFLKS 78 Query: 63 IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK-KRKITTESNILNMRNLKK 121 I+ +FI K R R+ R ++ +KS+ K+L+ K KI ++ + + K Sbjct: 79 IQLRDLYAFMSFIEKYRNNSTYARA--RKVATLKSYFKFLQGKAKIIVDNPTTELESPKI 136 Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 + P L Q++ L+ ++ + + AR+ IL L CG+R+SE ++ + I Sbjct: 137 NKRQPVYLTLDQSIHLLSSLDKNNKNY-----ARDYCILTLFLNCGMRLSELCGISIEKI 191 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGK 236 +D L I GKG+K R V L + K+I Y + + + LP LF K Sbjct: 192 RND--ILAIIGKGNKERTVYLNEACLKSIENYMRI----RDDSKALPEYKKFLFLSSHNK 245 Query: 237 PLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLST 294 P+N + I++ + GL + T H LRH+ AT + G D+RS+Q+ILGH +ST Sbjct: 246 PINQRTVEIMIKKHVKNAGLTDAKYTPHKLRHTAATLMYKYGDVDIRSLQNILGHENIST 305 Query: 295 TQIYTNVNS 303 TQIYT+V++ Sbjct: 306 TQIYTHVDN 314 >gi|327537283|gb|EGF24020.1| phage integrase family protein [Rhodopirellula baltica WH47] Length = 286 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 81/292 (27%), Positives = 127/292 (43%), Gaps = 30/292 (10%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 G +K T Y RQ F A + E++T Q +RQ F+ + + SL+ Sbjct: 5 GKAKRTHDGYIRAVRQLSDF-AGCSPEQVTEQHVRQF-------FLHLKNDRNFAYGSLR 56 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 + SGIK F + KR + I+ M L+ +LP L +Q L+ + Sbjct: 57 VAFSGIKFFFTHTCKR----DWEIIKMLKLQNITTLPEVLTIEQVHELIGSA-------- 104 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRK 208 R + +Y GLR++EAL L +I ++ + + GKG K R VPL + + Sbjct: 105 --TTQRMFVYFWTVYSLGLRLNEALHLQVSDIDAERGWVHVHRGKGAKDRYVPLPTTTVR 162 Query: 209 AILEYYD-------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 + Y+ L P D + P++ Q ++Q+ + L + Sbjct: 163 LLRNYWASHRHPCLLFPADGRKHDLAKDGVSQATTPMSETAVQGAMKQITKNLRFGKKVS 222 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 HTLRHS+ATHLL +G L+ IQ LGH L TT +Y ++ + EI Sbjct: 223 IHTLRHSYATHLLESGVGLKVIQRYLGHSSLQTTLVYLHLTDTAEANAREEI 274 >gi|300872277|gb|ADK38966.1| IntI4 [Vibrio sp. V48(2010)] Length = 293 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 62/188 (32%), Positives = 91/188 (48%), Gaps = 38/188 (20%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206 +D ++ + LLYG GLR+ E + L Q+I D + I QGKG K R V L P + Sbjct: 95 VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYIAISIWQGKGGKNRTVTLAKELYPHL 154 Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233 ++ I YYD P++ + P F+ + Sbjct: 155 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 214 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R +N V Q+ +R+ + G+ + T +TLRHSFATHLL G D+R++Q LGH + Sbjct: 215 RRHHMNETVLQKAVRRSAQEAGIEKTVTCNTLRHSFATHLLEVGADIRTVQEQLGHTDVK 274 Query: 294 TTQIYTNV 301 TTQIYT+V Sbjct: 275 TTQIYTHV 282 >gi|256752061|ref|ZP_05492929.1| tyrosine recombinase XerD [Thermoanaerobacter ethanolicus CCSD1] gi|289578310|ref|YP_003476937.1| tyrosine recombinase XerD [Thermoanaerobacter italicus Ab9] gi|256749071|gb|EEU62107.1| tyrosine recombinase XerD [Thermoanaerobacter ethanolicus CCSD1] gi|289528023|gb|ADD02375.1| tyrosine recombinase XerD [Thermoanaerobacter italicus Ab9] Length = 290 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 81/290 (27%), Positives = 138/290 (47%), Gaps = 29/290 (10%) Query: 35 TLQSYECDTRQFLIFLA-----FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 TL+SY D +QFL +L +Y +K TI + L Y + K ++Q ++ Sbjct: 23 TLESYNRDIKQFLNYLEEIGINYYNVKKSTI--LNYLYYLK-----KKGKSQA----TVS 71 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 R++S +K+F YL +K E + K P AL +Q ++LL Sbjct: 72 RNVSSLKAFYHYLFMKKKIEEDPTYMINTPKVEKKPPTALTVEQV-----DMLLSIDFGN 126 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 R+ A++ LLY GL++SE +SL +++ + I + +K R++P+ +A Sbjct: 127 DEKGLRDKALIELLYATGLKVSEVISLKLEDVNLSYGYVVI--RSNKERVIPIGSHAIEA 184 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 + Y + N + LF +RG+ L + IR+ + T +TLR SF Sbjct: 185 LKNYIEKG--RKAKNGENTLFLNLRGEKLTRQGCWKIIREYTDKINPGFPVTPNTLRQSF 242 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 A H+L NG D+R++Q +LG+ T + TN+ S + E+Y++ HP Sbjct: 243 AQHMLQNGADIRAVQEMLGY----QTDLNTNLLSLISKSKIKEVYNKFHP 288 >gi|78223999|ref|YP_385746.1| integron integrase [Geobacter metallireducens GS-15] gi|78195254|gb|ABB33021.1| Integron integrase [Geobacter metallireducens GS-15] Length = 449 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 85/318 (26%), Positives = 136/318 (42%), Gaps = 75/318 (23%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ-LSYTEIRAFISKRRTQKIGDRS 87 R S+ TL++Y +R+F FL ++++ +++ L+Y ++ + + Sbjct: 147 RHYSRKTLKTYALWSRKFQRFLKNKPPQELSTADVKEYLTYLAVKC--------NVAAST 198 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 ++ + + ++ KR+ + ++ KKS +P L+ ++ +D +L H SH Sbjct: 199 QNQAFNSLLFLFRHGLKREF---GELRDVPRAKKSLYVPVVLSREE----IDAILKHLSH 251 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL----L 203 S ++ LL+GCGLR+ E L L ++ D L + GKG K R VPL L Sbjct: 252 PF-------SLVVNLLFGCGLRLFECLQLRVRDFNFDAVVLTVHGKGKKDRTVPLPEAIL 304 Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR--------------- 248 P + I L DL G G L+ V ++Y Sbjct: 305 PELTAQIERVKALHEKDLAA--------GYAGVFLDDAVEKKYPHAPKELIHQWFFPQQS 356 Query: 249 --------QLRRY-----------------LGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283 +LRRY +P TAHT RHS+ATHLL D+R+I Sbjct: 357 LTLVEETGELRRYHLHESLLQEALYVAVRRAKIPKRVTAHTFRHSYATHLLQANYDIRTI 416 Query: 284 QSILGHFRLSTTQIYTNV 301 Q+ LGH L TT IYT+ Sbjct: 417 QTKLGHASLKTTMIYTHC 434 >gi|325297633|ref|YP_004257550.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324317186|gb|ADY35077.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 368 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 50/152 (32%), Positives = 82/152 (53%), Gaps = 7/152 (4%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 ++ ++ L+Y GLR SE L+LTP++I + ++RI GKG K R L P + + + Y+ Sbjct: 209 KHHCMISLVYSAGLRRSELLNLTPKDINSEMMSVRIMGKGKKCRYSLLSPKLLEELRRYF 268 Query: 215 -DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 + P + P G+P + + +++ + G+ HT RHSFATHL Sbjct: 269 REYRPKKWLFEGETP------GQPYSASALVKVLKEAAQRAGIKHRVHVHTARHSFATHL 322 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 L G DL +IQ +LGH + TT IY + ++ + Sbjct: 323 LEQGTDLHTIQELLGHNDIKTTAIYLHTSNAH 354 >gi|297544590|ref|YP_003676892.1| tyrosine recombinase XerD [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842365|gb|ADH60881.1| tyrosine recombinase XerD [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 290 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 81/290 (27%), Positives = 138/290 (47%), Gaps = 29/290 (10%) Query: 35 TLQSYECDTRQFLIFLA-----FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 TL+SY D +QFL +L +Y +K TI + L Y + K ++Q ++ Sbjct: 23 TLESYNRDIKQFLNYLEEIGINYYNVKKSTI--LNYLYYLK-----KKGKSQA----TVS 71 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 R++S +K+F YL +K E + K P AL +Q ++LL Sbjct: 72 RNVSSLKAFYHYLFMKKKIEEDPTYMINTPKVEKKPPTALTVEQV-----DMLLSIDFGN 126 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 R+ A++ LLY GL++SE +SL +++ + I + +K R++P+ +A Sbjct: 127 DEKGLRDKALIELLYATGLKVSEVISLKLEDVNLSYGYVVI--RSNKERVIPIGSHAIEA 184 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 + Y + N + LF +RG+ L + IR+ + T +TLR SF Sbjct: 185 LKNYIEKG--RKAKNGENTLFLNLRGEKLTRQGCWKIIREYTDKINPGFPVTPNTLRQSF 242 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 A H+L NG D+R++Q +LG+ T + TN+ S + E+Y++ HP Sbjct: 243 AQHMLQNGADIRAVQEMLGY----QTNLNTNLLSLISKSKIKEVYNKFHP 288 >gi|251780259|ref|ZP_04823179.1| site-specific recombinase, phage integrase family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084574|gb|EES50464.1| site-specific recombinase, phage integrase family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 329 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 90/309 (29%), Positives = 151/309 (48%), Gaps = 38/309 (12%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY----TEEKITIQTI----------RQ 65 ++L LE + S T+ +Y+ D F F+ Y ++KI + I + Sbjct: 19 DFLNYLETIKNKSSNTIAAYKKDLTIFFRFMKLYRGIVKDKKIEFEDIDITDINDEFLKS 78 Query: 66 LSYTEIRAFIS---KRRTQKIGDRSLKRSLSGIKSFLKYLK-KRKITTESNILNMRNLKK 121 + ++ AF+S K R R+ R ++ +KS+ K+L+ K KI ++ + + K Sbjct: 79 IKLRDLYAFMSFIEKYRNNSAYARA--RKVATLKSYFKFLQGKAKIIVDNPTTELESPKI 136 Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 + P L Q++ L+ ++ + + AR+ IL L CG+R+SE ++ + I Sbjct: 137 NKRQPVYLTLDQSIHLLSSLDKNNKNY-----ARDYCILTLFLNCGMRLSELCGISIEKI 191 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGK 236 +D L I GKG+K R V L + K+I Y + + + LP LF K Sbjct: 192 RND--ILVIIGKGNKERTVYLNEACLKSIENYMRI----RDDSKALPEYKKFLFLSSHNK 245 Query: 237 PLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLST 294 P+N + I++ + GL T H LRH+ AT + G D+RS+Q+ILGH +ST Sbjct: 246 PINQRTVEIMIKKHIKNAGLTDGKYTPHKLRHTAATLMYKYGDVDIRSLQNILGHENIST 305 Query: 295 TQIYTNVNS 303 TQIYT+V++ Sbjct: 306 TQIYTHVDN 314 >gi|75909304|ref|YP_323600.1| tyrosine recombinase XerD subunit [Anabaena variabilis ATCC 29413] gi|75703029|gb|ABA22705.1| tyrosine recombinase XerD subunit [Anabaena variabilis ATCC 29413] Length = 311 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 77/295 (26%), Positives = 132/295 (44%), Gaps = 33/295 (11%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 GLS+ T + Y D RQF F + + IR +S A+ ++ Q + + Sbjct: 39 GLSRTTREQYSRDMRQFRAF--------VKLDDIRIISPMTFIAY-AQHLEQTYAVATTR 89 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNEKQALTLVDNVLLHTSHE 148 R L+ + SF + + + + +R K S +L ++L ++Q ++D Sbjct: 90 RKLASLSSFCSFAVRLGFLAANPMAAVRKPKASTTLAGKSLTQQQVFRMLD--------- 140 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD---DQSTLRIQGKGDKIRIVPLLPS 205 + D RN +L +LY GLR+SEA+ L + + ++T+ + GKG K R + + S Sbjct: 141 -RTDDHRNRCLLKVLYSLGLRVSEAVGLRWSDFTEVNPTKTTVSVLGKGGKYRTLVVPQS 199 Query: 206 VRKAILEYYDL-------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 V LE +L D R GK L+ + ++ +GLP Sbjct: 200 V---WLELTELRTNQQHNGQNDYVFQSYSNRHRKQSGKQLDRCNASKIVKACAVAVGLPE 256 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 S +AH LRH+ A+H L+NG ++ ++ LGH +STT Y N + + + Sbjct: 257 SVSAHFLRHACASHSLANGASIQLVKETLGHANISTTNWYLEANPDDCASLYLNV 311 >gi|309378134|emb|CBX23224.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 164 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 53/148 (35%), Positives = 83/148 (56%), Gaps = 2/148 (1%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ A+L L+Y GLR+SEA+ L N+ D+ + GKGDK R+VP+ + YY Sbjct: 2 RDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESAYWVGRYY 61 Query: 215 -DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 + P L LF + ++ + +++ G+ + H+LRH+FATHL Sbjct: 62 TEARPVLLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGIG-HISPHSLRHAFATHL 120 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + +G DLR +Q +LGH L+TTQIYT++ Sbjct: 121 VQHGLDLRVVQDMLGHADLNTTQIYTHI 148 >gi|121583523|ref|YP_973949.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2] gi|120596773|gb|ABM40207.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2] Length = 331 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 83/316 (26%), Positives = 130/316 (41%), Gaps = 39/316 (12%) Query: 7 PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66 PE + W NL+ S T ++Y+ D R F+ F E+ R + Sbjct: 26 PEFARLAEVPPEAQWFANLD-----SAQTRRAYQGDLRAFMAFTGIVQPEEF-----RAV 75 Query: 67 SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126 + I A+ ++ Q + S++R L+ + S YL + T + + ++ K S Sbjct: 76 TRAHILAWRAELEKQNLAGASIRRKLAALASLYDYLCESNAVTHNPVRGVKRPKAETSEG 135 Query: 127 R--ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 + AL + QA LL R+ AIL +L LR E L ++ + Sbjct: 136 KTPALGDAQA-----RALLGAPPSDTLKGKRDRAILSVLLYHALRREELTKLLVKDFAQE 190 Query: 185 Q---STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR-------GIR 234 + LR+QGKG K+R +P P + + EY L PLFR G Sbjct: 191 RRGVPHLRVQGKGGKLRYLPAHPHSLRLVAEY--LAASGHGQEADSPLFRRTRAPRAGAL 248 Query: 235 GKPLNPG-----VFQRYIRQLRRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILG 288 L PG V RY+ Q+ G+ H LR + AT+ L + D+ +Q LG Sbjct: 249 ASALTPGSVYADVVVRYMAQV----GIAGENMGPHALRATAATNALEHQADIAKVQEWLG 304 Query: 289 HFRLSTTQIYTNVNSK 304 H +STT++Y S+ Sbjct: 305 HASISTTRVYDRRGSR 320 >gi|317481412|ref|ZP_07940479.1| phage integrase [Bacteroides sp. 4_1_36] gi|316902397|gb|EFV24284.1| phage integrase [Bacteroides sp. 4_1_36] Length = 343 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 88/317 (27%), Positives = 147/317 (46%), Gaps = 30/317 (9%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDR 86 +R +SK T+ SY QF+ ++ + ++ L+ + ++ T+K Sbjct: 22 QRNVSKNTIASYRDSFVQFINYMKDINGIPVERLLLKHLTRDNVINYLQWLHNTKKNTSA 81 Query: 87 SLKRSLSGIKSFLKYLKK---RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 + L+ I+SF YL+ + +IL+++ K S P L+ + +LL Sbjct: 82 TCNYRLAAIRSFCSYLQYIVIDNMVEWQSILSIKAKKTEISPPNYLSMEGI-----KLLL 136 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVP 201 T W R+ A+L L+Y G R+ E LT + D + T+R+ GKG K RIVP Sbjct: 137 AQPDTTSWKGRRHLALLSLMYDTGARVQEIADLTVDCVRIDTTPYTIRLTGKGRKTRIVP 196 Query: 202 LLPSVRKAILEYYDLCPFDLNLN----IQLPLFRGIRGKPLN-PGVFQRYIRQLRRYLG- 255 L + + Y + + NLN ++ PLF R + L G+ YI ++ + Sbjct: 197 LAEAQVDILRSYME----ENNLNDPNMMKKPLFFNGRHEKLTREGI--TYILKIYADMAN 250 Query: 256 ------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 +P + H++RHS A HLL G +L I+ ILGH + TT IY +SK + Sbjct: 251 KQQPEIIPKKISCHSIRHSKAMHLLQAGVNLVYIRDILGHVSIQTTDIYARADSKAKREA 310 Query: 310 MMEIYDQTHP-SITQKD 325 + Y + P +IT+K+ Sbjct: 311 LENAYTRLTPNTITEKE 327 >gi|182420557|ref|ZP_02643923.2| site-specific recombinase, phage integrase family [Clostridium perfringens NCTC 8239] gi|182379696|gb|EDT77175.1| site-specific recombinase, phage integrase family [Clostridium perfringens NCTC 8239] Length = 361 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 86/307 (28%), Positives = 148/307 (48%), Gaps = 34/307 (11%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT--EEKITIQTIRQLSYTEIR----- 72 N+L+N+ +G S T++ Y D F FL Y E I ++ I ++ +++ Sbjct: 52 NYLENV---KGKSLNTVKGYSVDLGLFFKFLKVYKGLENNIELEKIEEVEISDLGDNFIK 108 Query: 73 -----------AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLK 120 AF+ K R R+ R ++ +KSF K+L + K+ E+ + + + K Sbjct: 109 DITLSDIYAFLAFLEKVRNNSAYARA--RKVATLKSFFKFLNSKIKLIDENPTVELESPK 166 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 + P L Q++T++++ + ++ + R+ IL L CG+R+SE ++ + Sbjct: 167 INKRHPVYLTLDQSITVLNS--MDKGNKNYY---RDYCILTLFLNCGMRLSELCNIEIEK 221 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLN 239 I D TL I GKG+K R V L + AI Y + + LF + +P+N Sbjct: 222 IKGD--TLTIIGKGNKERTVYLNEASIAAIENYLKNRNDSKATEEAKKYLFLSSKYRPIN 279 Query: 240 PGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQI 297 + +++ G T H LRH+ AT + G D+RS+Q+ILGH +STTQI Sbjct: 280 KRSVEILVKKHIENAGFKDQKYTPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTTQI 339 Query: 298 YTNVNSK 304 YT+V+ + Sbjct: 340 YTHVDDE 346 >gi|37524549|ref|NP_927893.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|37525103|ref|NP_928447.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|37525111|ref|NP_928455.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783973|emb|CAE12838.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784529|emb|CAE13429.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784537|emb|CAE13437.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 376 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 87/316 (27%), Positives = 150/316 (47%), Gaps = 36/316 (11%) Query: 28 ERGLSKLTLQSYECDTRQFLIFL---AFYTEEKITIQTIRQLSYTEIRAFISKRRT--QK 82 ER S+ TL+ T F+++ Y IT + + R R+T + Sbjct: 44 ERNWSETTLKVQTHHTYHFILWATDRGLYYAADITRPILERYQ----RYLYQYRKTNGEP 99 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR---ALNE-KQALTLV 138 + R+ + L ++ + K+L K+ + + ++ ++ LPR +++E + L+L Sbjct: 100 LSIRTQRTQLQPLQVWFKWLTKQNLILANPAADIELPREEKRLPRYILSIDEIEHILSLP 159 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKI 197 D L AR+ A++ LL+ G+R SEA L +I + T+ I QGKG+K Sbjct: 160 DPNTLQG--------ARDRALMELLWSTGIRRSEAARLDIYSIDGSRKTVTIRQGKGNKD 211 Query: 198 RIVPLLPSVRKAI--LEYYD--LCP-FDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLR 251 R++PL +A+ L++Y + P + +IQ LF + G L P + Sbjct: 212 RVLPL---GERALNWLQFYQQQIRPQLLVTPDIQ-SLFVAMDGLDGLQPNGITNAVSGYI 267 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 R G+ H RH+ AT +L NG DLR IQ++LGH + +TQ+YT V+ + + Sbjct: 268 RAAGIEKKGACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRA----LQ 323 Query: 312 EIYDQTHPSITQKDKK 327 ++ THP+ D+K Sbjct: 324 AVHASTHPAEQMADEK 339 >gi|329119991|ref|ZP_08248663.1| tyrosine recombinase XerD [Neisseria bacilliformis ATCC BAA-1200] gi|327463904|gb|EGF10218.1| tyrosine recombinase XerD [Neisseria bacilliformis ATCC BAA-1200] Length = 290 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 72/245 (29%), Positives = 108/245 (44%), Gaps = 31/245 (12%) Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 RS R+LS K +L T ++R+ K+ +LP + E Q L+ T Sbjct: 64 RSQARALSACKRLYGWLLDTGQTAADPTEHLRSPKQEKTLPPVIGEAQIDALLAAPDADT 123 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL--- 202 H R+ A+L L+Y GLR+SEA+ L + GKG K RIVP+ Sbjct: 124 PHGL-----RDKALLELMYATGLRVSEAVRLRQDEAKLQAGFVSTIGKGGKQRIVPMGEE 178 Query: 203 --------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 L R +L+ C ++ + R + + IR L Sbjct: 179 AVYWLERYLAQARPQLLKNAR-CDEIFVSQKRVGISRQLAWMIVEKHAAAAGIRHL---- 233 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 + H LRH+FATHL+++G DLR +Q +LGH +STT+IYT V ++ + I Sbjct: 234 ------SPHGLRHAFATHLVNHGADLRVVQELLGHASISTTEIYTRVAAER----LKSIV 283 Query: 315 DQTHP 319 + HP Sbjct: 284 IEHHP 288 >gi|319412013|emb|CBY91946.1| hypothetical protein [Streptococcus pneumoniae] Length = 298 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 87/291 (29%), Positives = 134/291 (46%), Gaps = 32/291 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L + + LS T+++Y+ D QF +Y + ++I + Sbjct: 9 YLDYCKTHKRLSSHTIRAYKNDLMQFY-----------------NSNYDNVESYIEELTQ 51 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNE---KQALT 136 I +L+R ++ IK F YLK + I ES +R + LP+ + K + Sbjct: 52 SNIKTNTLRRKIACIKVFYNYLKYQHIIEESPFNQLRFQFRTEKILPKTIPYDILKNIFS 111 Query: 137 LVDN-VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 ++ V++ + K RN I+ LL G+RISE + ++I TL I GKG Sbjct: 112 YLEQRVVISKTDYQKQKAERNLLIISLLLSTGIRISELCHIHLKDINLSNKTLHIIGKGK 171 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRG-IRGKPLNPGVFQRYIRQLR 251 K RI+ L +LE Y +N N + LF G KPL+ + ++++ Sbjct: 172 KERILFLGDQTTFNLLETY------INKNGKESNDFLFPGKYSPKPLSEQSVRLILKKIV 225 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 L + T H RHSFAT LL N D+R IQ ILGH +S TQIYT+V+ Sbjct: 226 EQNSLSKTITPHMFRHSFATMLLDNDVDIRYIQQILGHSSISITQIYTHVS 276 >gi|257458544|ref|ZP_05623679.1| integron integrase [Treponema vincentii ATCC 35580] gi|257443978|gb|EEV19086.1| integron integrase [Treponema vincentii ATCC 35580] Length = 426 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 80/284 (28%), Positives = 135/284 (47%), Gaps = 51/284 (17%) Query: 61 QTIRQLSYTEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119 + ++ S EI F+S+ T +K+ S ++L+ + K + I + NI+ Sbjct: 146 KNLKAFSDAEINPFVSRLATKEKVAASSQNQALAALLFLYKNILGLTIQSPENIIRA--- 202 Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 KKS LP L+ ++ + ++L + + LLYG G+R+ E+L L Q Sbjct: 203 KKSKKLPAVLSREETAKIF-SLLPENDY---------GLFIRLLYGTGMRLMESLRLRVQ 252 Query: 180 NIMDDQSTLRIQ-GKGDKIR--IVPL---------LPSVRKA----ILEYYDLCPFDLNL 223 +I D++ + + GKG K R ++P+ L +VR+ + + L P L Sbjct: 253 DIDFDKNEITVHCGKGAKDRKTMLPVSLKFPLQKHLENVRRIHEADCKDGFGLVPLPSAL 312 Query: 224 NIQLP----------LF----------RGIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTA 262 + P +F G +G+ ++P V QR + + G+P Sbjct: 313 AKKYPNAGKTWAWQWVFPQARRWQNKETGEQGRHHIDPSVIQRTLHEAVLRSGIPKPIGC 372 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 HT RHSFATHLL +G D+R+IQ +LGH +STT +YT+V ++ G Sbjct: 373 HTFRHSFATHLLESGYDIRTIQELLGHSDVSTTMVYTHVLNRGG 416 >gi|294776304|ref|ZP_06741787.1| integron integrase [Bacteroides vulgatus PC510] gi|294449844|gb|EFG18361.1| integron integrase [Bacteroides vulgatus PC510] Length = 366 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/150 (36%), Positives = 81/150 (54%), Gaps = 7/150 (4%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 ++ ++ L+Y GLR SE L+LTP++I+ ++ + I GKG K R L + K + EY+ Sbjct: 207 KHRCMISLIYSAGLRRSELLNLTPKDIISERMLVCIMGKGRKCRYSLLSEKLLKELREYF 266 Query: 215 DLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 Q LF G G+P + + +++ G+ H LRHSFATHL Sbjct: 267 K------EYRPQKWLFEGETPGEPYSASALVKVLKEAASRAGIKHRVHVHMLRHSFATHL 320 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 L G DLR+IQ +LGH + TT IY +V S Sbjct: 321 LEQGTDLRTIQELLGHNDIKTTSIYLHVTS 350 >gi|18310145|ref|NP_562079.1| site-specific tyrosine recombinase XerC [Clostridium perfringens str. 13] gi|18144824|dbj|BAB80869.1| probable integrase/recombinase [Clostridium perfringens str. 13] Length = 450 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 86/307 (28%), Positives = 148/307 (48%), Gaps = 34/307 (11%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT--EEKITIQTIRQLSYTEIR----- 72 N+L+N+ +G S T++ Y D F FL Y E I ++ I ++ +++ Sbjct: 141 NYLENV---KGKSLNTVKGYSVDLGLFFKFLKVYKGLENNIELEKIEEVEISDLGDNFIK 197 Query: 73 -----------AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLK 120 AF+ K R R+ R ++ +KSF K+L + K+ E+ + + + K Sbjct: 198 DITLSDIYAFLAFLEKVRNNSAYARA--RKVATLKSFFKFLNSKIKLIDENPTVELESPK 255 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 + P L Q++T++++ + ++ + R+ IL L CG+R+SE ++ + Sbjct: 256 INKRHPVYLTLDQSITVLNS--MDKGNKNYY---RDYCILTLFLNCGMRLSELCNIEIEK 310 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLN 239 I D TL I GKG+K R V L + AI Y + + LF + +P+N Sbjct: 311 IKGD--TLTIIGKGNKERTVYLNEASIAAIENYLKNRNDSKATEEAKKYLFLSSKYRPIN 368 Query: 240 PGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQI 297 + +++ G T H LRH+ AT + G D+RS+Q+ILGH +STTQI Sbjct: 369 KRSVEILVKKHIENAGFKDQKYTPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTTQI 428 Query: 298 YTNVNSK 304 YT+V+ + Sbjct: 429 YTHVDDE 435 >gi|325300266|ref|YP_004260183.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324319819|gb|ADY37710.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 368 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 50/152 (32%), Positives = 82/152 (53%), Gaps = 7/152 (4%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 ++ ++ L+Y GLR SE L+LTP++I + ++RI GKG K R L P + + + Y+ Sbjct: 209 KHHCMISLVYSAGLRRSELLNLTPKDINSEMMSVRIMGKGKKCRYSLLSPKLLEELRRYF 268 Query: 215 -DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 + P + P G+P + + +++ + G+ H LRHSFATHL Sbjct: 269 REYRPKKWLFEGETP------GEPYSASALVKVLKEAAQRAGIKHRVHVHMLRHSFATHL 322 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 L G DL +IQ +LGH + TT IY + ++ + Sbjct: 323 LEQGTDLHTIQELLGHNDIKTTAIYLHTSNAH 354 >gi|149191778|ref|ZP_01870016.1| site-specific recombinase IntI4 [Vibrio shilonii AK1] gi|148834358|gb|EDL51357.1| site-specific recombinase IntI4 [Vibrio shilonii AK1] Length = 321 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 88/323 (27%), Positives = 146/323 (45%), Gaps = 65/323 (20%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 N++++ R S+ T+ +Y Q+++ Y ++K +++S E+ F+S Sbjct: 7 NYIRDFMRARHYSERTIDAYLSWIFQYIV----YHDKKHP----KEMSTAEVEDFLSYLI 58 Query: 80 TQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALT 136 T + + R+ ++L+ + K++ I +NMR K KS LP L K+ Sbjct: 59 TSRNLAMRTQNQALNALVFLYKHILHDPID-----VNMRFKKSNKSKKLPTVLTVKEVSK 113 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGD 195 +++++L + + L YG GLR+ E L L Q+I D LRI + KG+ Sbjct: 114 VLESMLPNFLLPAQ-----------LKYGSGLRLMECLRLRYQDIDFDYGALRIWRAKGN 162 Query: 196 KIRIV----PLLPSVRK-------------------------AILEYYDLCPFDLNLNIQ 226 K R+V L P++R+ A+ Y +LN Sbjct: 163 KNRVVTLARELFPAIRRQQQHVESIWRQDVKQSDYSGVWLPNALATKYPNSNKELNWQFL 222 Query: 227 LPLFRG--------IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278 P R IR +N Q+ ++ + G+ + HTLRHSFATHLL +G Sbjct: 223 FPSARLSIDPTSNLIRRHHINESSVQKALKSAVKKTGIEKRVSCHTLRHSFATHLLESGA 282 Query: 279 DLRSIQSILGHFRLSTTQIYTNV 301 D+R++Q LGH L TTQ+YT+V Sbjct: 283 DIRTVQEQLGHTDLKTTQVYTHV 305 >gi|37525317|ref|NP_928661.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|37527576|ref|NP_930920.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784744|emb|CAE13652.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787011|emb|CAE16085.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 376 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 87/316 (27%), Positives = 150/316 (47%), Gaps = 36/316 (11%) Query: 28 ERGLSKLTLQSYECDTRQFLIFL---AFYTEEKITIQTIRQLSYTEIRAFISKRRT--QK 82 ER S+ TL+ T F+++ Y IT + + R R+T + Sbjct: 44 ERNWSETTLKVQTHHTYHFILWATDRGLYYAADITRPILERYQ----RYLYQYRKTNGEP 99 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR---ALNE-KQALTLV 138 + R+ + L ++ + K+L K+ + + ++ ++ LPR +++E + L+L Sbjct: 100 LSIRTQRTQLQPLQVWFKWLTKQNLILANPAADIELPREEKRLPRYILSIDEIEHILSLP 159 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKI 197 D L AR+ A++ LL+ G+R SEA L +I + T+ I QGKG+K Sbjct: 160 DPNTLQG--------ARDRALMELLWSTGIRRSEAARLDIYSIDGSRKTVTIRQGKGNKD 211 Query: 198 RIVPLLPSVRKAI--LEYYD--LCP-FDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLR 251 R++PL +A+ L++Y + P + +IQ LF + G L P + Sbjct: 212 RVLPL---GERALNWLQFYQQQVRPQLLVTPDIQ-SLFVAMDGLDGLQPNGITNAVSGYI 267 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 R G+ H RH+ AT +L NG DLR IQ++LGH + +TQ+YT V+ + + Sbjct: 268 RAAGIEKKGACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRA----LQ 323 Query: 312 EIYDQTHPSITQKDKK 327 ++ THP+ D+K Sbjct: 324 AVHASTHPAEQMADEK 339 >gi|187929889|ref|YP_001900376.1| site-specific tyrosine recombinase XerD [Ralstonia pickettii 12J] gi|187726779|gb|ACD27944.1| tyrosine recombinase XerD [Ralstonia pickettii 12J] Length = 314 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 83/307 (27%), Positives = 148/307 (48%), Gaps = 23/307 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q + L +E GL++ TL +Y D L A + E+ ++I + ++ + + R Sbjct: 23 QRFCDALWLEDGLARNTLDAYRRD----LTLYAHWLAERN--KSIAETEDGDLADYFAAR 76 Query: 79 RTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 + S R + K F ++ L++ + T+ + L + K+ P+ L+E Q L Sbjct: 77 HAESRAS-SANRRRTVFKRFFQWALREHVVNTDPSRL-LPTAKQPPRFPKTLSETQVEAL 134 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDK 196 ++ + T + R+ A++ L+Y GLR+SE ++L + +++ + GKG K Sbjct: 135 INAPDVDTP-----LGLRDRAMIELMYASGLRVSEIVALKTVEVGLNEGVVRVVGGKGGK 189 Query: 197 IRIVPLLPS----VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 R+VP +R+ + + L LF RG+ + F I++ Sbjct: 190 DRLVPFGAEAGDWLRRYLQDRQTGRTALLGERTADALFVTARGEGMTRQAFWYLIKRYAL 249 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 + + HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V + + Sbjct: 250 LADIHAPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARER----LRT 305 Query: 313 IYDQTHP 319 ++ Q HP Sbjct: 306 LHAQHHP 312 >gi|188589919|ref|YP_001921531.1| tyrosine recombinase XerD [Clostridium botulinum E3 str. Alaska E43] gi|251778368|ref|ZP_04821288.1| tyrosine recombinase XerD [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188500200|gb|ACD53336.1| tyrosine recombinase XerD [Clostridium botulinum E3 str. Alaska E43] gi|243082683|gb|EES48573.1| tyrosine recombinase XerD [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 292 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 78/305 (25%), Positives = 139/305 (45%), Gaps = 41/305 (13%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLA-----FYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 + G S+ T+ +Y D +L FL Y +K+T+ A+I Sbjct: 14 DSGKSENTIYAYVTDVTLYLKFLDKKGIDIYKSDKLTVM-----------AYIQYLLESG 62 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV- 141 +RS+ R + ++SF YLK + + E + ++ K + LP+ L VD V Sbjct: 63 KSERSINRIVISLRSFYSYLKSQSLINEVPKIEYKSSKNNRKLPQILT-------VDEVD 115 Query: 142 -LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 ++ T + R++A+L L+Y G+++SE +SL +I + +R + R++ Sbjct: 116 KIIRTVEKDCPKGIRDNALLELMYATGMKVSELISLNVDDINLELHFVRCTDSRNFERLI 175 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP------LFRGIRGKPLNPGVFQRYIRQLRRYL 254 P+ S KA+ EY L++ ++ LF + G L R +++ + Sbjct: 176 PIGRSACKALNEY-------LSIRYKIAECGVPNLFVNLNGNKLTRQGIWRIVKEYSKRA 228 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 + +T RHSFA HLL NG ++R++Q +LG+ L+ Y + + D + IY Sbjct: 229 HIDKDVNLNTFRHSFAVHLLQNGANVRAVQKLLGNQVLTYMDTYYEIIN---NDKINFIY 285 Query: 315 DQTHP 319 THP Sbjct: 286 MNTHP 290 >gi|189425632|ref|YP_001952809.1| integrase [Geobacter lovleyi SZ] gi|189421891|gb|ACD96289.1| integron integrase [Geobacter lovleyi SZ] Length = 453 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 82/318 (25%), Positives = 141/318 (44%), Gaps = 75/318 (23%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRS 87 R S+ TL++Y +R+F FL ++ ++L+ +++A+++ T K+ + Sbjct: 151 RHYSRKTLKTYANWSRKFQYFL--------KNRSPQELTGDDVKAYLTHLAVTCKVASTT 202 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 ++ + + ++ KR+ + ++ KKS +P L+ ++ +D +L H ++ Sbjct: 203 QNQAFNSLLFLYRHGLKREF---GELRDVPRAKKSLYIPTVLSREE----IDAILAHLAY 255 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL----L 203 ++ LL+GCGLR E L L ++ D L I GKG K R VP+ L Sbjct: 256 PF-------DLVVKLLFGCGLRQFECLQLRVRDFNFDAGKLTIHGKGKKDRTVPIPEAIL 308 Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL--------- 254 P +++ I +L DL + G G L+ V ++Y + + +L Sbjct: 309 PELKRQIKLVGELHERDLAV--------GYDGVFLDDSVEKKYPKAPKEFLHQWFFPQKN 360 Query: 255 -------------------------------GLPLSTTAHTLRHSFATHLLSNGGDLRSI 283 +P T+HT RHSFATHLL G D+R I Sbjct: 361 LTLAAETGQQRRWHLHESELQEALYPAVRKAKIPKRVTSHTFRHSFATHLLQAGYDIRVI 420 Query: 284 QSILGHFRLSTTQIYTNV 301 Q++LGH L TT IYT+ Sbjct: 421 QTLLGHSSLKTTMIYTHC 438 >gi|167040193|ref|YP_001663178.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X514] gi|300914277|ref|ZP_07131593.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X561] gi|307724487|ref|YP_003904238.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X513] gi|166854433|gb|ABY92842.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X514] gi|300889212|gb|EFK84358.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X561] gi|307581548|gb|ADN54947.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X513] Length = 290 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 78/285 (27%), Positives = 134/285 (47%), Gaps = 19/285 (6%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 TL+SY D +QFL +L E ++ L+Y + K ++Q ++ R+LS Sbjct: 23 TLESYNRDIKQFLNYLEEIEFEYYNVKKSTILNY--LYYLKKKGKSQA----TVSRNLSS 76 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 +K+F YL +K E + K P L +Q ++LL Sbjct: 77 LKAFYHYLFMKKKIEEDPTYMINTPKVEKKPPATLTVEQV-----DMLLSIDFGNDEKGL 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ A++ LLY GL++SE +SL +++ + I + +K R++P+ +A+ Y Sbjct: 132 RDKALIELLYATGLKVSEVISLKLEDVNLSYGYVVI--RSNKERVIPIGSHAIEALKNYI 189 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 + N + LF +RG+ L + IR+ + T +TLR SFA H+L Sbjct: 190 EKG--RKAKNGENTLFLNLRGEKLTRQGCWKIIREYTDKINPGFPVTPNTLRQSFAQHML 247 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 NG D+R++Q +LG+ T + TN+ S + E+Y++ HP Sbjct: 248 QNGADIRAVQEMLGY----QTDLNTNLLSLISKSKIKEVYNKFHP 288 >gi|126668245|ref|ZP_01739205.1| site-specific recombinase, phage integrase family protein [Marinobacter sp. ELB17] gi|126627271|gb|EAZ97908.1| site-specific recombinase, phage integrase family protein [Marinobacter sp. ELB17] Length = 283 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 65/205 (31%), Positives = 99/205 (48%), Gaps = 43/205 (20%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 K+ +P L ++ L+ VL + ++ A+L + YGCGLR+SEA++L + Sbjct: 94 KRPQRIPELLTRQEVTRLLAAVL----------NPKHQALLSVTYGCGLRVSEAVALKVK 143 Query: 180 NIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYY------------DLCPFDLNLNIQ 226 +I ++ LRI QGKG K R+VPL P V +A+ Y+ DL P D +L+I Sbjct: 144 DIDGERHLLRIEQGKGAKDRMVPLAPGVLQALRRYWQIRHPMLWLFSSDLLP-DRHLHIT 202 Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286 P Q+ + G+ H LRH++ATH L G + +Q + Sbjct: 203 TP---------------QKVYHTAKTTSGIEKCGGIHALRHAYATHQLERGLPIHELQRL 247 Query: 287 LGHFRLSTTQIYTN----VNSKNGG 307 LGH L +TQ Y + V +NGG Sbjct: 248 LGHSDLRSTQRYLHWLPGVTPQNGG 272 >gi|160947529|ref|ZP_02094696.1| hypothetical protein PEPMIC_01463 [Parvimonas micra ATCC 33270] gi|158446663|gb|EDP23658.1| hypothetical protein PEPMIC_01463 [Parvimonas micra ATCC 33270] Length = 324 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 91/308 (29%), Positives = 147/308 (47%), Gaps = 31/308 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE----------EKITIQTIRQ--- 65 ++L L +G S LT++ Y D ++FL F+ + ++I +I + Sbjct: 12 DDYLNYLLTIKGRSNLTVKEYYYDLKRFLKFIIMRKKLFGYNLNSDINSVSILSINKRDI 71 Query: 66 --LSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNI---LNMRNL 119 + +++ A+IS + ++ R +S IKS+ KYL N L + L Sbjct: 72 LDIDISDLHAYISFCDSNYNDSTKTKARKISAIKSWFKYLHNTVELINKNPAEKLELPKL 131 Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 +K N + L+E + V N + +E + R+ I+ + CGLRISE + + Sbjct: 132 QKRNPVYLTLSESEK---VINSIKEEKNE--FNRTRDLCIILIFLTCGLRISELTGINIE 186 Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239 +I DD+ L + GKG+K RIV L + AI Y L P N LF K ++ Sbjct: 187 SIKDDK--LSVIGKGNKERIVFLNENCIYAIKSYLQLRPCTKN---TTALFLSSHKKRIS 241 Query: 240 PGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQI 297 Q +++ GL P T H LRH+ AT + G D+R+IQSILGH ++TTQI Sbjct: 242 NRSIQLRLKKYILLAGLDPKIYTPHKLRHTAATLMYKYGDVDIRTIQSILGHTSVATTQI 301 Query: 298 YTNVNSKN 305 YT+++ + Sbjct: 302 YTHLDDDD 309 >gi|170745401|ref|YP_001766858.1| integrase family protein [Methylobacterium radiotolerans JCM 2831] gi|170659002|gb|ACB28056.1| integrase family protein [Methylobacterium radiotolerans JCM 2831] Length = 305 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 75/287 (26%), Positives = 133/287 (46%), Gaps = 21/287 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L++ ++ER LS TL +Y D + + E + + ++Y + +SKR Sbjct: 8 EAYLRHCQLERHLSSNTLAAYRQDISELIAHFGLI--EVVAVTGDALVTYAD---HLSKR 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTL 137 R + ++KR L + ++L + + ++ + LPR L + Sbjct: 63 R--GLAPATVKRRLVCARGLFRWLTRTGALSADPFGGTEIRVRIPDRLPRCLATDE---- 116 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 + + A LL+ G+R+ E +S+ +I D+ +RI GKG++ Sbjct: 117 ----MARLARAADDASATTRLATLLLFATGMRVGELVSVRLADIDLDRDVIRIVGKGNRQ 172 Query: 198 RIVPLLP--SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 R V ++P S++ AI EY + + R G+ L + +R+L + G Sbjct: 173 RQV-VIPNESLKDAIREYAR--TYHADDRASERFLREPNGRSLTTAAIRTRLRRLAKAAG 229 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 L + T H LRH+ AT LL G D+R +Q +LGH + TTQIYT+V+ Sbjct: 230 LVRTVTPHMLRHTAATELLEAGVDIRFVQRLLGHRSILTTQIYTHVS 276 >gi|89894317|ref|YP_517804.1| hypothetical protein DSY1571 [Desulfitobacterium hafniense Y51] gi|219668726|ref|YP_002459161.1| integrase family protein [Desulfitobacterium hafniense DCB-2] gi|89333765|dbj|BAE83360.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219538986|gb|ACL20725.1| integrase family protein [Desulfitobacterium hafniense DCB-2] Length = 327 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 80/287 (27%), Positives = 132/287 (45%), Gaps = 17/287 (5%) Query: 32 SKLTLQSYECDTRQFLIFLAFY------TEEKITIQTIRQLSYTEIRAFISKRRTQ-KIG 84 S T ++Y + FL F+ Y + +TI ++Q+ +T++ A+++ RTQ K G Sbjct: 26 SPHTQKAYAQELFLFLKFICDYKPGFPPSPSSLTIGHLQQIQHTDVEAYLNWARTQRKNG 85 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 R+L R + IKSF +YL + + + + + + ++ P+AL +Q LVD + Sbjct: 86 VRALARKQAAIKSFYRYLLREDLILKDITIKLNPISQNQKAPKALEPEQIADLVDIIETG 145 Query: 145 TSHETK------WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 T + + R+ AI G GLR+SE L Q+I ++ + KG+K Sbjct: 146 TGLSEGQLKYHLYTEKRDYAIFLTFIGTGLRLSELYGLNLQSIDFNKGCFAVIRKGNKET 205 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ----RYIRQLRRYL 254 + V AI +Y L LF I+G ++ Q +Y+ L+ + Sbjct: 206 NIYFNTEVATAIQDYIKNERPRYMLQHTEALFLSIQGNRMSKRAIQDLIKKYMAILQNFG 265 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +AH LR +FAT LL +L +Q LGH TT+IY V Sbjct: 266 HNTEGYSAHKLRSTFATLLLRETENLAIVQDALGHSDPRTTRIYAKV 312 >gi|83310025|ref|YP_420289.1| integrase [Magnetospirillum magneticum AMB-1] gi|82944866|dbj|BAE49730.1| Integrase [Magnetospirillum magneticum AMB-1] Length = 285 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/149 (38%), Positives = 75/149 (50%), Gaps = 7/149 (4%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213 +N L Y GLR+SE ++L +I + +R+ QGKG K R V L + + Y Sbjct: 121 KNRTALTTAYATGLRVSEVVALKLADIDSGRMVIRVEQGKGRKDRYVMLSAQLLGILRTY 180 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 + L + LF G KP+ P V R G+ T HTLRHSFATHL Sbjct: 181 WPLA------RPEHWLFPGREDKPIEPTVLNSACRSACVAAGIDKRVTVHTLRHSFATHL 234 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 L G D+R IQ +LGH LSTT YT V+ Sbjct: 235 LEAGTDIRIIQVLLGHNNLSTTARYTQVS 263 >gi|257066445|ref|YP_003152701.1| site-specific tyrosine recombinase XerC [Anaerococcus prevotii DSM 20548] gi|256798325|gb|ACV28980.1| integrase family protein [Anaerococcus prevotii DSM 20548] Length = 329 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 95/311 (30%), Positives = 154/311 (49%), Gaps = 33/311 (10%) Query: 20 NWLQNLEIERGLSKLTLQSYECD----TRQFLIFLAFYTEEK--------ITIQTI---- 63 ++L L+ RGLS T++ Y+ D R +I +Y +E+ I I I Sbjct: 12 DYLNYLKSIRGLSSNTIKEYQYDLMLMIRYMIIRRIYYGDEESFNDDFKNIKINRIVNPK 71 Query: 64 --RQLSYTEIRAFISKRRTQKIGDRSLKRS--LSGIKSFLKYLKKRKITTESNILN-MRN 118 L+ + AF+S +K D S RS +S IKSF KYL +SNI + + N Sbjct: 72 FFESLTLQDFYAFLSFLDNEK-NDSSTTRSRKISAIKSFYKYLFSEIEVIDSNISDKLSN 130 Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178 K S P L + L+D + + +++ R+ AI++ G+R+SE +S+ Sbjct: 131 PKISQRQPVYLTLNETELLLDTI---KNEPNEFLRFRDLAIVFTFLTTGMRLSELVSINM 187 Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGK 236 ++I+ D I GKG+K R V L + R+ +L+ Y L + +L I LF R K Sbjct: 188 EDIIYDH--FNIIGKGNKERTVYLTNNCRE-LLDQYILIRNKYIKDLKID-ALFISTRKK 243 Query: 237 PLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLST 294 ++ Q I + + G S + H LRH+ AT + G D+R+++ ILGH +ST Sbjct: 244 RISNRAVQSTIDKYLKKAGFDTSVYSTHKLRHTAATLMYKYGNVDIRALKDILGHVNIST 303 Query: 295 TQIYTNVNSKN 305 TQIYT+++ ++ Sbjct: 304 TQIYTHLDDED 314 >gi|119473240|ref|ZP_01614917.1| putative integrase [Alteromonadales bacterium TW-7] gi|119444534|gb|EAW25851.1| putative integrase [Alteromonadales bacterium TW-7] Length = 323 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 86/301 (28%), Positives = 132/301 (43%), Gaps = 74/301 (24%) Query: 64 RQLSYTEIRAFIS----------KRRTQKIGDRS---------LKRSLSG-----IKSFL 99 RQ S I A++S KR +GD LKR++S + L Sbjct: 18 RQYSLRTINAYLSWIANFIHFHNKRHPSSMGDSEVEAFLDHIVLKRNMSAKTQCAALNAL 77 Query: 100 KYLKKRKITTESNI-LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158 +L K + E ++ LN K+ LP + + V +++H S R Sbjct: 78 AFLYKHIVKNELSLNLNFARSKRQPKLPVVMTPDE----VKQLMVHLS-------KRYYL 126 Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSVRKAILEY 213 I+ L+YG GLR+ EA+ L ++I D ++I GKG+K RIV LLP +R I++ Sbjct: 127 IVGLMYGSGLRVMEAVQLRVKDIDFDYKCIQIWNGKGNKHRIVTLATELLPLLRNQIMQV 186 Query: 214 YDLCPFDLN----LNIQLP------------------LFRG-----------IRGKPLNP 240 + DL + +P LF IR +P Sbjct: 187 EEYLRLDLQNEQYAGVWMPNALARKYPSANKSLAWQYLFPSYKLSSDPETGEIRRHHFHP 246 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 ++ +++ + + T HT RHSFATHLL +G D+R++Q+ LGH + TTQIYT+ Sbjct: 247 TCVRKAVKKALKQTNITKIVTPHTFRHSFATHLLQSGSDIRTVQAQLGHTDVKTTQIYTH 306 Query: 301 V 301 V Sbjct: 307 V 307 >gi|310766358|gb|ADP11308.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 351 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 92/324 (28%), Positives = 145/324 (44%), Gaps = 35/324 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF---- 74 ++WL +L G S T+Q Y R FL + E I Q+S + A+ Sbjct: 26 ESWLAHLAAA-GRSARTVQGYGERVRAFLAWC-----ELRGITYAPQVSLAVLEAYQRWL 79 Query: 75 -----ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK--ITTESNILNMRNLKKSNSLP- 126 RR G R L LS I+ L++L KR + + +L + K+ LP Sbjct: 80 QSYRRADGRRLAVNGQRHL---LSAIRMLLRWLLKRHHILYNPAELLEL--PKEERRLPA 134 Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 + +E++ ++ ++ T RN AIL LL+ G+R +E L ++ + Sbjct: 135 QVFSEEETRRVLQSLDAGTP-----PGLRNRAILELLWSTGIRRTELAGLLLSDVDFTRG 189 Query: 187 TLRIQ-GKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 + ++ GKG K R+VP+ + + Y D+ P LF +G L G Sbjct: 190 VVNVRRGKGGKDRVVPVGHAALMWLARYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLT 249 Query: 245 RYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 R +R L + H RHS AT +L NG D R IQ+ILGH +L TTQIYT V Sbjct: 250 AMAGRAIREGAHLKKAGACHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAI 309 Query: 304 KNGGDWMMEIYDQTHPSITQKDKK 327 + + +++ THP+ ++ +K Sbjct: 310 GH----LQKVHAHTHPAEKRRTEK 329 >gi|134298655|ref|YP_001112151.1| phage integrase family protein [Desulfotomaculum reducens MI-1] gi|134051355|gb|ABO49326.1| phage integrase family protein [Desulfotomaculum reducens MI-1] Length = 293 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 73/286 (25%), Positives = 136/286 (47%), Gaps = 34/286 (11%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 G ++ T+++Y+ D F + T ++ + I + E + ++ Q + ++ Sbjct: 20 GTARSTVEAYQKDVVYFSKWYIDTTGKEPHLWDITSIDLREYQEYMLS--VQGLMPATIN 77 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNM-RNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 R ++ ++ ++++ + S +L + +K+ + P+AL + L+ H Sbjct: 78 RRMAAMEKYIRWAHGKGYI--SRLLAFPKIIKEQKTPPKALGRVEQNRLLREAERHGK-- 133 Query: 149 TKWIDARNSAILYLLYGCGLRISEALS--LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 AR+ A++ L+ CGLR+ E +S L+ +I + T+ + GKG K R VP+ P Sbjct: 134 -----ARDIALIRLMMSCGLRVGEVVSIRLSDLDIGERHGTVAVLGKGKKYRKVPVPPEA 188 Query: 207 RKAILE--------YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 RKAI E Y D N N+ R + ++ I+ + ++ GL L Sbjct: 189 RKAIKEWLAERTQRYPDNDWLFPNRNVGNITARNV----------EQVIKNIGKFAGLDL 238 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 H LRH+ AT+++ G D+ ++ ILGH L+TT IYT +SK Sbjct: 239 H--PHVLRHTAATNMIRTGADIVTVAQILGHANLNTTAIYTKPDSK 282 >gi|13959816|gb|AAK49012.1| USC7-1p [Myxococcus xanthus] Length = 168 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 87/170 (51%), Gaps = 13/170 (7%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 +L L+Y GLR+SE + L + Q LR+ GKG K R+VPL + + Y Sbjct: 1 MLELMYAAGLRVSELVLLPATAVNLRQGVLRVTGKGSKERLVPLGEESQHWLERYLQQSR 60 Query: 219 FDLN--------LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSF 269 L + Q PLF L F +++ + G+ P + H LRHSF Sbjct: 61 PQLVGKGRVHALADGQTPLFIEPTLHALTRQAFWHLVKRHAQVAGIDPARISPHGLRHSF 120 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 ATHLL+ G DLR++Q +LGH LSTTQIYT V ++ + +++ + HP Sbjct: 121 ATHLLNRGADLRALQMLLGHSSLSTTQIYTLVAREH----LQKLHARHHP 166 >gi|307591252|ref|YP_003900461.1| integrase family protein [Cyanothece sp. PCC 7822] gi|306986817|gb|ADN18692.1| integrase family protein [Cyanothece sp. PCC 7822] Length = 275 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 75/277 (27%), Positives = 135/277 (48%), Gaps = 30/277 (10%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 G SK T+++Y C +QF+ F+ Q + +++ ++ +++ R ++ Sbjct: 22 GKSKTTVKTYVCHVKQFIDFMN---------QPLAEITLDDLVLWVN-RLNLTYTPPTVA 71 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 + IKS + K + N+ L K P +K+A ++D + E Sbjct: 72 NKILCIKSLFSFCVKVGYLS----FNIGALIK----PPKTRDKRAEKILDQGDVKRLIEQ 123 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 R+ +L L+Y GLR+SEA++LT ++ ++ L + GKG K+R + ++P Sbjct: 124 A-TPGRDRVLLCLIYTTGLRVSEAVNLTWSDLKGNK--LAVYGKGSKLRFI-IVPD---W 176 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 +LE P I +F GKP++ R I++ G+ T+AH LRHS Sbjct: 177 LLEQLQTLP-----KISEFIFATSTGKPIDRIFTHRMIKKCAEKAGIDPKTSAHWLRHSH 231 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 A+H ++NG ++R +Q LGH +L TT+ Y ++N +G Sbjct: 232 ASHAINNGCNVRLLQESLGHSKLETTEKYLHINPNSG 268 >gi|189500094|ref|YP_001959564.1| putative transcriptional regulator, TetR family [Chlorobium phaeobacteroides BS1] gi|189495535|gb|ACE04083.1| putative transcriptional regulator, TetR family [Chlorobium phaeobacteroides BS1] Length = 408 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 86/316 (27%), Positives = 143/316 (45%), Gaps = 62/316 (19%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87 R S T QSY+ R+F FL E + Q + Q ++++ F+S ++ + + Sbjct: 106 RHRSYRTEQSYKAWVRRFGAFL-----EHKSPQAVEQ---SDLQRFLSSLAVERRVSAST 157 Query: 88 LKRSLSGIKSFLKYLKKRKIT-TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 ++ + + +++ +K++ E+ + + R K LP L+ ++ ++ L Sbjct: 158 QNQAFNALLFLFRHVLDKKVSGMEATVRSNRPRK----LPVVLSREEVRSI-----LEIM 208 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR--IVP-- 201 +E W+ A L+YG GLRI E L L ++I D+ L ++ GKG+K R + P Sbjct: 209 NEVTWLMAS------LIYGGGLRIDECLKLRIKDIDFDRGFLTVRSGKGNKDRQTLFPKN 262 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQL--------------------------------PL 229 L +R + E ++ D I+ P+ Sbjct: 263 LAEPLRNHLSEIRNIHEEDRRNGIEGVSMPGALAYKYPNAGKEWGWFWVFPSANLSADPV 322 Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289 IR + P Q+ +Q R G+ + HTLRHSFATHLL G D+R++Q +LGH Sbjct: 323 TNTIRRHHMYPTTVQKAFKQAREKAGVVKQASVHTLRHSFATHLLEAGYDIRTVQELLGH 382 Query: 290 FRLSTTQIYTNVNSKN 305 L TT IYT+V KN Sbjct: 383 ANLQTTMIYTHVAKKN 398 >gi|32471281|ref|NP_864274.1| integrase [Rhodopirellula baltica SH 1] gi|32396983|emb|CAD71953.1| integrase [Rhodopirellula baltica SH 1] Length = 348 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 80/292 (27%), Positives = 126/292 (43%), Gaps = 30/292 (10%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 G +K T Y RQ F A + +++T Q +RQ F+ + + SL+ Sbjct: 67 GKAKRTHDGYIRAVRQLSDF-AGCSPDQVTEQHVRQF-------FLHLKNDRNFAYGSLR 118 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 + SGIK F + KR + I+ M L+ +LP L +Q L+ + Sbjct: 119 VAFSGIKFFFTHTCKR----DWEIIKMLKLQNITTLPEVLTIEQVHELIGSA-------- 166 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRK 208 R + +Y GLR++EAL L +I ++ + + GKG K R VPL + + Sbjct: 167 --TTQRMFVYFWTVYSLGLRLNEALHLQVSDIDAERGWVHVHRGKGAKDRYVPLPTTTVR 224 Query: 209 AILEYYD-------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 + Y+ L P D + P++ Q ++Q+ + L + Sbjct: 225 LLRNYWASHRHPSFLFPADGRKHDLAKDGVSEATTPMSETAVQGAMKQITKNLRFGKKVS 284 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 HTLRHS+ATHLL G L+ IQ LGH L TT +Y ++ + EI Sbjct: 285 IHTLRHSYATHLLEAGVGLKVIQKYLGHSSLQTTMVYLHLTDTAEANAREEI 336 >gi|317481288|ref|ZP_07940359.1| phage integrase [Bacteroides sp. 4_1_36] gi|316902621|gb|EFV24504.1| phage integrase [Bacteroides sp. 4_1_36] Length = 366 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 55/152 (36%), Positives = 82/152 (53%), Gaps = 7/152 (4%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 ++ ++ L+Y GLR SE L+LTP++I+ ++ +RI GKG K R L + K + EY+ Sbjct: 207 KHRCMISLIYSAGLRRSELLNLTPKDIISERMLVRIMGKGRKCRYSLLSEKLLKELREYF 266 Query: 215 DLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 Q LF G G+ + + +++ G+ H LRHSFATHL Sbjct: 267 K------EYRPQKWLFEGETPGEQYSASALVKILKEAASRAGIKHRVHVHMLRHSFATHL 320 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 L G DLR+IQ +LGH + TT IY +V S + Sbjct: 321 LEQGTDLRTIQELLGHNDIKTTSIYLHVTSAH 352 >gi|186471688|ref|YP_001863006.1| integrase family protein [Burkholderia phymatum STM815] gi|184197997|gb|ACC75960.1| integrase family protein [Burkholderia phymatum STM815] Length = 405 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 84/290 (28%), Positives = 150/290 (51%), Gaps = 20/290 (6%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 R ++LQ+L RG + T ++ R FL +A + +T+R LS T++ +I + Sbjct: 110 RGHYLQHLRELRGFAVSTAAQHDSTLRDFLGRVA------LPDRTLRTLSATDVENYI-R 162 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKSNSLPRALNEKQALT 136 +++++ ++L+ ++ +++FL+Y + R IT + ++ + PRAL+ K Sbjct: 163 LKSREVTRQTLQHVIAHLRAFLRYCEDRGDITPGLHCIDTPRTYRGELPPRALDWKLVPK 222 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 LV++V H+ T W R+ A+L+L+ GLR SE +LT +I + TL +Q + K Sbjct: 223 LVNSVDRHS--RTGW---RDHAVLHLMAYYGLRASEVAALTLSSINWESRTLHVQQR--K 275 Query: 197 IRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPL-FRGIRGKPLNPGVFQRYIRQLRRY 253 R V +LP + I L Y C + L L R G + GV + ++ R Sbjct: 276 TRSVLVLPLADRTINLLRRYLRCGRSGSDCPALFLRARSPAGPLTHYGVVDIFCKRAR-L 334 Query: 254 LGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 GL ++ ++++ LRH+FA LL G ++I ILGH L +T +Y ++ Sbjct: 335 SGLAITNSSSYALRHAFAMRLLDRGVGTKAIGDILGHRSLESTCVYLRLD 384 >gi|325922658|ref|ZP_08184403.1| integron integrase [Xanthomonas gardneri ATCC 19865] gi|325546862|gb|EGD17971.1| integron integrase [Xanthomonas gardneri ATCC 19865] Length = 298 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 86/177 (48%), Gaps = 37/177 (20%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKA---------IL 211 LLYG G+R+ E L L +++ + + ++ GKG K R VPL S+R+A ++ Sbjct: 100 LLYGSGMRLMECLRLRIKDVDAARGEIVVRDGKGGKDRRVPLPLSLREALQRQRERALVV 159 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPG---------------------------VFQ 244 DL + + L R PG V Q Sbjct: 160 HAADLAAGTGRVFLPHALARKYPNADAEPGWQYLFPSARQSRDPRSGRVGRHHVSEEVLQ 219 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 R ++ RR G+ S T HTLRHSFATHLL +G D+R++Q +LGH ++TTQIYT+V Sbjct: 220 RAVQVARRRAGIAKSATCHTLRHSFATHLLEDGHDIRTVQELLGHKDVATTQIYTHV 276 >gi|253580998|ref|ZP_04858259.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847661|gb|EES75630.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 312 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 83/298 (27%), Positives = 143/298 (47%), Gaps = 36/298 (12%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE---IRAFISK 77 +L+ E + L T+++Y D QF F+ + Q +TE + +F+S Sbjct: 14 YLKTCETIKKLDSKTIKAYRIDLSQFHTFM------------LPQEDFTEKSTLNSFLSL 61 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNSLPRALNEKQAL 135 +K ++ KR ++ +K+F YL + +++ LN++ ++ LPR + Sbjct: 62 LH-KKYKPKTAKRKIATLKAFFHYLVYEESLSQNPFEKLNVK-FREPQVLPRIVPN---- 115 Query: 136 TLVDNVLLHTSHETKWIDA---------RNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 T+++ + L T ++ K + R+ A++ LL+ G+R+SE SLT I Sbjct: 116 TIIE-IFLRTMYKQKKLAPTTYKYNSILRDIAVIELLFATGVRVSELCSLTLSQIDFTTY 174 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAIL-EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245 + I GKG K RI+ + K IL EYY F +++ F K + + Sbjct: 175 KIIINGKGSKERILQIGNEDVKEILSEYY--AAFKTDISKTGWFFINRLHKRYSEESVRS 232 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 I + + + + T H RHSFAT LL + D+R IQ +LGH + TT+IYTNV++ Sbjct: 233 MIVKYLKLAAIDMHITPHMFRHSFATLLLESDVDIRYIQRMLGHSSIKTTEIYTNVST 290 >gi|134298247|ref|YP_001111743.1| phage integrase family protein [Desulfotomaculum reducens MI-1] gi|134050947|gb|ABO48918.1| phage integrase family protein [Desulfotomaculum reducens MI-1] Length = 304 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 76/284 (26%), Positives = 144/284 (50%), Gaps = 25/284 (8%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI-----RQLSYTEIRAFISKRRTQKI 83 + LSK T++ Y+ + + + E I+I+++ RQ ++ ++ IS R +K Sbjct: 17 KNLSKRTIEWYQFTLNKLIDYCK---ENNISIESMTTPQARQYVFS-LQKSIS-RTGKKY 71 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 D + + +K YL + + ++ ++ +K + ++ +L Sbjct: 72 ADNGINGYIRSVKIMFNYLFEDEYIEKNPFAKVKQIKTDKVIIETFEVEEV-----KRML 126 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 + ++ + + R++ ++ +LY G+RISEA++L +I D++ ++ GKG K R+VP Sbjct: 127 NQFNKKVYTEFRDALLIQILYDTGIRISEAINLKISDIDTDKNMFKVFGKGHKERMVPFG 186 Query: 204 PSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQL---RRYLGLP 257 S+++ IL+Y L + ++ +L LF G L R I ++ + G Sbjct: 187 RSIKREILKY--LPKRNKEVDKELDEGYLFSTRNGTALTIRNVHRKIVEVGTKAKIKGKR 244 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 LS AHT RH+FA L NGG+L S+Q+I+GH LSTT+ Y ++ Sbjct: 245 LS--AHTFRHTFAKTYLVNGGNLFSLQTIMGHNDLSTTRKYVHL 286 >gi|227484989|ref|ZP_03915305.1| possible tyrosine recombinase XerC [Anaerococcus lactolyticus ATCC 51172] gi|227236986|gb|EEI87001.1| possible tyrosine recombinase XerC [Anaerococcus lactolyticus ATCC 51172] Length = 329 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 88/323 (27%), Positives = 150/323 (46%), Gaps = 48/323 (14%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIF----------------------LA 51 LL + N+L+++ +GLS+ T++ Y D F+ + + Sbjct: 9 LLTDYLNYLKSI---KGLSESTIKEYAYDLETFIEYQIVRKIYNNNKKDYENDFDYKKIN 65 Query: 52 FYTE----EKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS--LSGIKSFLKYLKKR 105 F+ + EKITIQ + AF+S K D + RS +S IKSF KY+ Sbjct: 66 FFVDNIFFEKITIQ--------DFYAFLSYLDNDK-NDSATTRSRKISAIKSFYKYMYSE 116 Query: 106 KITTESNILN-MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLY 164 +NI + + N K S P L + L++ + + + ++ AR+ AI++ Sbjct: 117 IEVINTNIADKLTNPKISQRQPVYLTLSETERLIETI---SKEKNTFLKARDLAIVFTFL 173 Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224 G+R+SE +S+ ++ D + I GKG+K R V L + + I Y + L + Sbjct: 174 TTGMRLSELISIDLSDVNKD--SFNIIGKGNKERTVYLTKNCQDLINNYIVIRSEYLKDD 231 Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG-DLRS 282 LF R ++ Q I + G S + H LRH+ AT + G D+R+ Sbjct: 232 TVNALFISTRKNRISNRAVQSTIEKYLAKAGFDTSVYSTHKLRHTAATLMYKYGNVDIRA 291 Query: 283 IQSILGHFRLSTTQIYTNVNSKN 305 ++ ILGH +STTQIYT++++++ Sbjct: 292 LKDILGHASVSTTQIYTHLDNED 314 >gi|48477921|ref|YP_023627.1| DNA integration/recombination/invertion protein [Picrophilus torridus DSM 9790] gi|48430569|gb|AAT43434.1| DNA integration/recombination/invertion protein [Picrophilus torridus DSM 9790] Length = 276 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 82/272 (30%), Positives = 136/272 (50%), Gaps = 33/272 (12%) Query: 49 FLAFYTEEKITIQTIRQLSYTEIRAFIS--KRRTQKIGD---RSLKRSLSGIKSFLK--- 100 F + E+ ++ TI++ + +R FI+ ++ + I D KR L+ K + K Sbjct: 7 FENYMIGERKSLNTIKEYK-SLVRDFINYINKKPEDINDFDIEDYKRHLAVDKRYSKSSQ 65 Query: 101 YLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS--- 157 YL + I L R++K +PR LN + + V L+T+ I A ++ Sbjct: 66 YLSMKAIKL---FLQSRDIK----IPRTLNAPRRNKKIP-VYLNTNEAKNLIKASSNNRK 117 Query: 158 --AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY 214 AI+ LL G+R+SE +L ++I +++ + ++ GKG K RI ++P IL Y Sbjct: 118 HLAIVSLLLYSGIRVSELCNLKIEDIDLNENIIYVRSGKGGKDRIA-IIPDECSEILRSY 176 Query: 215 DLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 N ++ P F + + +R I++L G+ T H LRH+FAT Sbjct: 177 ------YNDRLKYPGDTFFISNKKSRYDTSTIERLIKKLAVRAGIEKHVTPHVLRHTFAT 230 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 +L NGGD+R IQ ILGH ++TTQIYT+++ Sbjct: 231 SVLRNGGDIRFIQQILGHASVATTQIYTHIDD 262 >gi|255692294|ref|ZP_05415969.1| phage-related integrase [Bacteroides finegoldii DSM 17565] gi|260622027|gb|EEX44898.1| phage-related integrase [Bacteroides finegoldii DSM 17565] Length = 341 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 87/310 (28%), Positives = 149/310 (48%), Gaps = 19/310 (6%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT----IRQLSYTEIRAFISK-RRTQK 82 ERG+S T++SY + F + L F +E++ I+ + ++ + F+ + T+K Sbjct: 21 ERGVSPNTIRSY---SESFSLLLNFL-DEQVNIKADNLRLEHITRKTVLNFLDWLQDTKK 76 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 + + + L+ ++SF Y++ + + ++K R++N ++ + +L Sbjct: 77 SSNATRNQRLAALRSFCTYMQYEDVKRLEQWQEILSIKVKTHEKRSVN-YLSIDGIKLLL 135 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVP 201 TK R+ A++ LLY G R+ E + LTP ++ ++ + + GKG K RIVP Sbjct: 136 AQIPINTK-KGRRDLALISLLYDSGARVQELIDLTPASLKLEKPCHVTLFGKGRKKRIVP 194 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGV---FQRYIRQLRRYLG-- 255 L + Y + DL+ Q PLF G+ L N G+ YI R Sbjct: 195 LQDEQVNLLRSYMEENRLDLSGFNQRPLFFNSCGRKLTNSGISYILNNYINHARIQDPEL 254 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 +P + HTLRHS A HLL G +L I+ ILGH + TT+IY +SK + + Y Sbjct: 255 IPEKISPHTLRHSKAMHLLQAGVNLVYIRDILGHVSIQTTEIYARADSKQKREALESAYV 314 Query: 316 QTHPS-ITQK 324 P+ IT++ Sbjct: 315 NMIPNDITER 324 >gi|291557209|emb|CBL34326.1| Site-specific recombinase XerD [Eubacterium siraeum V10Sc8a] Length = 301 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 86/322 (26%), Positives = 135/322 (41%), Gaps = 59/322 (18%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ +R L+ T ++Y D QF F + + I I I L Sbjct: 10 YLRYCSEQRTLNSKTTKAYRTDLLQFAEFSSGMFSKDIIISYIGCLH------------- 56 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 ++ ++ +R ++ +K+F YL ++I N + S P L + + ++ Sbjct: 57 RQFKPKTARRKIASLKAFAHYLMIQEII---NANPFDKIDTSFREPMVLPKVIPMNIISE 113 Query: 141 VLLHT--------SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 +L + + ++ RN A+L +L+ G R+SE +LTP + T++I G Sbjct: 114 ILANAYDVFCQCNTDFSRRNAVRNIAVLEILFATGARVSEICTLTPDMVDLTNHTIKIFG 173 Query: 193 KGDKIRIVPLL-PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF------QR 245 KG + RI+ + P V +A+ YY+ R L G F QR Sbjct: 174 KGSRERIIQIENPDVLEALNRYYE----------------TFRSDILESGFFFVNKLHQR 217 Query: 246 YIRQLRRYL--------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 Q R + G T H RHSFAT LL D+R IQ ILGH ++TTQI Sbjct: 218 LTEQSVRVMISNQAAAIGYNKHITPHMFRHSFATLLLEEDVDIRYIQKILGHSSIATTQI 277 Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319 YT+V+ EI HP Sbjct: 278 YTHVSMAKQK----EILSVKHP 295 >gi|296162695|ref|ZP_06845481.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295887083|gb|EFG66915.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 339 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 60/160 (37%), Positives = 82/160 (51%), Gaps = 6/160 (3%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILE 212 AR+ AIL +LY G+R E + LT +I T+ I QGKG + R +PL + Sbjct: 168 ARDRAILEVLYSTGMRRMELIGLTVSDIDLSGGTVMIRQGKGRRDRYIPLGERACYWVEW 227 Query: 213 YYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 Y D L + + LF G+P G +++ G+ H LRH+ AT Sbjct: 228 YCDQIRPSLAVRADEWTLFLTDYGEPFGKGRLSDLVKRYMEMAGIR-EGACHVLRHACAT 286 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV---NSKNGGD 308 H+L NG D+R IQ++LGH LS+TQIYT V K GGD Sbjct: 287 HMLENGADIRFIQALLGHADLSSTQIYTQVAIGKLKLGGD 326 >gi|94310186|ref|YP_583396.1| phage integrase [Cupriavidus metallidurans CH34] gi|93354038|gb|ABF08127.1| tyrosine-based site-specific recombinase , N-terminal SAM-like protein [Cupriavidus metallidurans CH34] Length = 336 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 83/321 (25%), Positives = 140/321 (43%), Gaps = 41/321 (12%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 M+ NLP I+ + +L+ L +GL +++SY R FLIF+A ++ Sbjct: 1 MKDFNLPSII-------HRYFLEYLPRHKGLQSSSIRSYRDSLRLFLIFVAGTHRLGVSE 53 Query: 61 QTIRQLSYTEIRAFI---SKRRTQKIGDRSLKRSLSGIKSFLKYLKK---RKITTESNI- 113 + L Y ++AF+ R I R+ + L+ + F +Y+ + + T + + Sbjct: 54 LVLEHLDYPAVQAFLHSMEADRGNAISTRNQR--LAALHVFYEYVGRTVPEMLPTSAKVA 111 Query: 114 -LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172 + M+ + +E QA+ + H + +R+ A+L LLY G R+SE Sbjct: 112 AIPMKRCPRPEMTFLGRDEVQAMF----ACIPAQHR---LSSRDRALLMLLYNTGARVSE 164 Query: 173 ALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231 L + + + + +R+ GKG K R PL KA+ D NL + P+F Sbjct: 165 VAHLKVEQLDLRSPARVRLLGKGSKWRTCPLWNQTAKALQAMLD--ERGTNLPPESPVFV 222 Query: 232 GIRGKPLNP-GVFQRYIRQLRRYLGL---------PLSTTAHTLRHSFATHLLSNGGDLR 281 G P+ G+++R +R Y L T H RH+ A HLL +G ++ Sbjct: 223 GASQAPMTRFGIYKR----IRHYATLWEASGHTASAAKVTPHVFRHTTAVHLLESGVEVN 278 Query: 282 SIQSILGHFRLSTTQIYTNVN 302 I+ LGH L TT Y + Sbjct: 279 VIRGWLGHVNLETTNRYAEIT 299 >gi|57640712|ref|YP_183190.1| integrase/recombinase [Thermococcus kodakarensis KOD1] gi|73920475|sp|Q5JHA3|XERCL_PYRKO RecName: Full=Probable tyrosine recombinase xerC-like gi|57159036|dbj|BAD84966.1| integrase/recombinase [Thermococcus kodakarensis KOD1] Length = 282 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 121/234 (51%), Gaps = 20/234 (8%) Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 F++ R +RSL + ++++ ++ + E+ ++ K SLP+AL ++ Sbjct: 50 FLAHLRKNGYSNRSLNLVVQALRAYFRF---EGLDDEAE--RLKPPKVPRSLPKALTREE 104 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG- 192 L+ +V+ T R+ I+ LLYG GLR+SE +L ++ D+ + ++G Sbjct: 105 VKRLL-SVIPPTR-------KRDRLIVLLLYGAGLRVSELCNLKKDDVDLDRGLIVVRGG 156 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 KG K R+VP+ + I Y + D + + + R + K V+ Y+ L+R Sbjct: 157 KGAKDRVVPIPKYLADEIRAYLE-SRSDESEYLLVEDRRRRKDKLSTRNVW--YL--LKR 211 Query: 253 Y-LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 Y + T H LRHSFATHLL G D+R+IQ +LGH LSTTQIYT V ++ Sbjct: 212 YGQKAGVEVTPHKLRHSFATHLLEEGVDIRAIQELLGHSNLSTTQIYTKVTVEH 265 >gi|325509244|gb|ADZ20880.1| site-specific recombinase, phage integrase family [Clostridium acetobutylicum EA 2018] Length = 328 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 92/308 (29%), Positives = 141/308 (45%), Gaps = 34/308 (11%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-------EKITIQTIRQ-----LS 67 N+L L R S+ T+ +Y+ D F FL Y E I I I ++ Sbjct: 19 NFLNYLRTIRAKSERTIYNYKIDLILFFRFLKLYRGLSKDADFEDIVINDIDSSFLDSIT 78 Query: 68 YTEIRAFIS-KRRTQKIGDRSLKRSLSGIKSFLKYLK-KRKITTESNILNMRN--LKKSN 123 ++ AF+S + G + R ++ ++SF KY+ K KI E+ L + + L K N Sbjct: 79 LEDLFAFLSFTEEFRNNGSYARARKIAALRSFFKYISGKAKIIKENPTLELESPSLPKRN 138 Query: 124 SLPRALNEKQAL-TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 + L E QAL +D R+ I+ L CGLR+SE +S+ I Sbjct: 139 PIYLTLEESQALLNSIDGPF----------KERDYCIITLFLNCGLRLSELVSIDISKIK 188 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL---CPFDLNLNIQLPLFRGIRGKPLN 239 D TL I GKG+K R + L KAI +Y + + + + LF + +N Sbjct: 189 GD--TLTILGKGNKERTIYLNEMCLKAIEDYIPVRNQKASSIKIEDKDALFISRKLTRIN 246 Query: 240 PGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQI 297 + +++ L T H LRH+ AT + G D+RS+Q ILGH +STTQI Sbjct: 247 QRTIELMVKKYALKANLDYEKLTPHKLRHTAATLMYKYGNVDIRSLQQILGHESVSTTQI 306 Query: 298 YTNVNSKN 305 YT+++ +N Sbjct: 307 YTHIDDEN 314 >gi|28866934|gb|AAM95157.1| site-specific recombinase IntIA [Listonella anguillarum] Length = 320 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 86/188 (45%), Gaps = 38/188 (20%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI 210 I+ R + LLYG GLR+ E + L Q+I D +R+ QGKG K R V L + + Sbjct: 118 IEPRYQLQIMLLYGSGLRLMECVRLRIQDIDLDYGAVRVWQGKGGKNRTVTLAKELYPQL 177 Query: 211 LE-------YYD----------------------LCPFDLNLNIQLPLF-------RGI- 233 E YYD P++ N + P G+ Sbjct: 178 AEQQALAKRYYDKDMQTKGYGGVWLPNALREKYPSAPYEFNWHYLFPSNLLTLDENSGLK 237 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R +N QR +R+ + S + HTLRHSFATHLL G D+R++Q LGH + Sbjct: 238 RRHHINESALQRAVRKTAHDAEIQKSVSCHTLRHSFATHLLEAGADIRTVQEQLGHSDVK 297 Query: 294 TTQIYTNV 301 TTQIYT+V Sbjct: 298 TTQIYTHV 305 >gi|258648850|ref|ZP_05736319.1| phage-related integrase [Prevotella tannerae ATCC 51259] gi|260850864|gb|EEX70733.1| phage-related integrase [Prevotella tannerae ATCC 51259] Length = 341 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 90/314 (28%), Positives = 144/314 (45%), Gaps = 28/314 (8%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDR 86 E GLS T+++Y F+ F+ K ++ L+ + F+ K G Sbjct: 20 ECGLSHNTIRAYGNTFLSFIDFMEKTRRVKADRLSLEHLTRDNVSDFLRWTEENKGCGIS 79 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL--VDNVLLH 144 + + L+ +F KY+ +I ++ + S+ +EKQ+++ VD + L Sbjct: 80 TRNQRLAAFHTFSKYM------LYGDIFHLEQWQSILSIKSKRSEKQSVSYLSVDGIKLL 133 Query: 145 TSHETKWIDARNS----AILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRI 199 S ++ RN A++ LLY G R+ E + LTP ++ + + + GKG K R+ Sbjct: 134 LSLIP--VNTRNGLRDLALIALLYDSGARVQELIDLTPMDLHLVKPYYVSLFGKGRKRRL 191 Query: 200 VPLLP---SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGV---FQRYIRQLRR 252 VPL + K +E L LN Q PLF RG+ L N GV RY+R Sbjct: 192 VPLQEQQVELLKKYMEAEGLLKQSLN---QHPLFANNRGEKLTNAGVTFILMRYVRNAHV 248 Query: 253 YLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 +P + H+LRHS A HLL G +L I+ ILGH + TT+IY +SK + + Sbjct: 249 ADPDLVPAKVSPHSLRHSKAMHLLQAGVNLVYIRDILGHVSIQTTEIYARADSKQKREAL 308 Query: 311 MEIYDQTHPSITQK 324 Y P++ +K Sbjct: 309 EAAYIDVIPTMDKK 322 >gi|319426956|gb|ADV55030.1| integrase family protein [Shewanella putrefaciens 200] Length = 324 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 68/243 (27%), Positives = 114/243 (46%), Gaps = 12/243 (4%) Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL-NEKQALTLVD 139 Q +G + + ++ IK+F++ + + + + + + + +LP+AL + + ++ Sbjct: 77 QPLGQQQKRNLVTYIKTFVQCMYSKGLLSANTLAGIELPHSGRALPKALFSVTEIEKILA 136 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR 198 LL H R+ AIL + + G+R SE + L +I LR+ GKG K R Sbjct: 137 QSLLFGVH-----GLRDRAILEVFFATGIRRSELMMLDIDDIDFTAKLLRVNHGKGQKER 191 Query: 199 IVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 IVP+ + ++ Y L P + LF G L + R G+ Sbjct: 192 IVPMSERACEWLVFYLSKLRPMISFIGSGGALFLANNGTRLRANQLSEMAGRYVRLSGIK 251 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 + H RH+ AT +L NG +LR +Q +LGH + TTQIYT+V+ + E+Y T Sbjct: 252 RTGACHLFRHATATTMLDNGAELRHVQEMLGHASILTTQIYTHVSRAK----LTEVYGST 307 Query: 318 HPS 320 HPS Sbjct: 308 HPS 310 >gi|163788404|ref|ZP_02182850.1| tyrosine type site-specific recombinase [Flavobacteriales bacterium ALC-1] gi|159876724|gb|EDP70782.1| tyrosine type site-specific recombinase [Flavobacteriales bacterium ALC-1] Length = 376 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 72/274 (26%), Positives = 130/274 (47%), Gaps = 25/274 (9%) Query: 31 LSKLTLQSYECDTRQ--FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 L KL L+ Y +T + L F F K + + Q++ ++R +I K + D + Sbjct: 111 LDKLQLKKYANNTVKSYILAFETFINYHKA--KELIQINENDVRNYILKLIQENKSDSYI 168 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 +++ IK + + + + + + +K+ LP+ L+++ L ++ N Sbjct: 169 NIAINSIKFYYESV----LGMPNRFYQIERPRKAKKLPKVLSKEDVLKVITNTN------ 218 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVR 207 + ++ I+ LLY G+R +E + L +I + +RI KG K R L ++ Sbjct: 219 ----NLKHKCIVSLLYSSGIRRNELIHLKISDIDSKRMLIRIDAAKGKKDRYTLLSHALL 274 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 K + +YY + +F G+ GK + + ++ + ++ T H LRH Sbjct: 275 KDLRDYYK------QWKPEKYIFEGLYGKQYSAQSVGQIVKNAAIKARIQITVTPHMLRH 328 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 SFATHLL +G D+R IQ +LGH TT+IYT+V Sbjct: 329 SFATHLLEDGVDIRQIQVLLGHSSTKTTEIYTHV 362 >gi|118581028|ref|YP_902278.1| integron integrase [Pelobacter propionicus DSM 2379] gi|118503738|gb|ABL00221.1| integron integrase [Pelobacter propionicus DSM 2379] Length = 468 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 83/310 (26%), Positives = 136/310 (43%), Gaps = 59/310 (19%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ-LSYTEIRAFISKRRTQKIGDRS 87 R S+ TL++Y +RQF FL + +++ +++ ++Y ++ K+ + Sbjct: 166 RHYSRKTLKTYANWSRQFQRFLKDKSPQELATADVKEYMTYLAVQC--------KVAAST 217 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 ++ + + ++ KR+ + ++ KKS +P L+ + +D +L S+ Sbjct: 218 QNQAFNALLFLYRHGLKREF---GELRDVPRAKKSLYIPVVLSRPE----IDAILAQLSY 270 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL----L 203 + ++ LL+GCGLR E L L ++ D L I GKG K R VPL + Sbjct: 271 PF-------NLVVKLLFGCGLRQFECLQLRVRDFNFDAGILTIHGKGKKDRTVPLPESLV 323 Query: 204 PSVRK------------------------AILEYYDLCP-------FDLNLNIQLPLFRG 232 P +R A+ + Y P F N+ L G Sbjct: 324 PELRAQIKVVGELHDRDLSAGYDGVFLDDAVEKKYPKAPKEFVHQWFFPQKNLTLVAETG 383 Query: 233 IRGK-PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291 R + L+ Q + R +P T+HT RHSFATHLL G D+R IQ++LGH Sbjct: 384 QRRRWHLHESELQEALYPAVRRAKIPKRVTSHTFRHSFATHLLQAGYDIRVIQTLLGHSS 443 Query: 292 LSTTQIYTNV 301 L TT IYT+ Sbjct: 444 LKTTMIYTHC 453 >gi|330874852|gb|EGH09001.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. glycinea str. race 4] Length = 149 Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 81/158 (51%), Gaps = 19/158 (12%) Query: 170 ISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS--------VRKAILEYYDLCPFDL 221 ++ +SLT + + Q LR+ GKG K R+VP+ +R A E P D+ Sbjct: 1 VTAVISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEAIVWVERYLRGARDELLGGKPSDV 60 Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281 LF RG + F I+ G+ S + HTLRH+FATHLL++G DLR Sbjct: 61 -------LFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTLRHAFATHLLNHGADLR 113 Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 +Q +LGH LSTTQIYT++ + E++ + HP Sbjct: 114 VVQMLLGHSDLSTTQIYTHLARAR----LQELHAKHHP 147 >gi|332983016|ref|YP_004464457.1| integrase family protein [Mahella australiensis 50-1 BON] gi|332700694|gb|AEE97635.1| integrase family protein [Mahella australiensis 50-1 BON] Length = 290 Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 82/301 (27%), Positives = 147/301 (48%), Gaps = 29/301 (9%) Query: 12 FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71 F+ L E +N L L E+ L T+++Y D +F+ +L + + I + E Sbjct: 2 FDHLDEFKNEL--LRQEKSLH--TVRAYVSDVTEFIKWLTDMLGTEYSPDKITSVDIQEF 57 Query: 72 RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131 R+++ R K S+ R L+ ++ + L+ I + + ++ ++ + Sbjct: 58 RSYLHNIRQNK--PTSVNRKLTALEQYCSVLESMGIIKNNPAIGVKKMR--------YQK 107 Query: 132 KQALTLVDNVLLHTSHETKWIDA--RNSAILYLLYGCGLRISEALSLTPQNIM--DDQST 187 + + +DN L+ +++A R+ AI L+ GLR +E +L +++ D + T Sbjct: 108 QSQVEALDNKDLYKLKRMFYMEANKRDIAIFELMINTGLREAEVCNLQLSDVIVSDRKGT 167 Query: 188 LRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 + ++ GKG+K R VPL RKAI Y ++ P N LF + L+ R Sbjct: 168 VIVRSGKGEKYREVPLNIDARKAITAYLEVRPDRGNY-----LFVSNKSDRLSESQLYRI 222 Query: 247 IRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNSK 304 IR +Y + ++ H LRH+FAT LL +GG DL +++ +LGH ++TT IYT N + Sbjct: 223 IR---KYADMADVNVYPHKLRHTFATKLLRDGGVDLVTVKELLGHTSINTTAIYTKANKQ 279 Query: 305 N 305 + Sbjct: 280 D 280 >gi|255525234|ref|ZP_05392176.1| integrase family protein [Clostridium carboxidivorans P7] gi|296188719|ref|ZP_06857107.1| phage integrase [Clostridium carboxidivorans P7] gi|255511097|gb|EET87395.1| integrase family protein [Clostridium carboxidivorans P7] gi|296046983|gb|EFG86429.1| phage integrase [Clostridium carboxidivorans P7] Length = 330 Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 91/314 (28%), Positives = 151/314 (48%), Gaps = 36/314 (11%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY----TEEKITIQTI----------RQ 65 ++L LE +G S+ T++ Y+ D F FL Y +E + + I R+ Sbjct: 19 DFLNYLETIKGKSQNTIKGYKIDLTMFFRFLKIYKGLINDETLDFEEIPIGDIDNSLLRK 78 Query: 66 LSYTEIRAFIS---KRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKK 121 ++ ++ AF+S K R R+ R ++ +KSF K+L R K+ E+ +++ + K Sbjct: 79 ITLADLYAFLSFTEKYRQNSTYARA--RKVATLKSFFKFLSSRAKVIDENPAVDLESPKI 136 Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 S P L ++ +L+ V S K R+ I+ L CGLR+SE S+ NI Sbjct: 137 SKRNPTYLTLDESKSLLKAV----SGRNK---ERDYCIITLFLNCGLRLSELCSINISNI 189 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNP 240 D L + GKG+K R V L + KA+ Y + +++ I LF ++ Sbjct: 190 KGD--ILTVIGKGNKERTVYLNNACIKALNNYLKVRSENIDKIIDKDVLFISKNHTRMSK 247 Query: 241 GVFQRYIRQLRRYLGLPLST---TAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQ 296 + ++ + + L + T H LRH+ AT + G D+RS+Q ILGH +STTQ Sbjct: 248 RTVEVMLK--KHLINAELDSEKYTPHKLRHTAATLMYKYGNVDIRSLQKILGHENVSTTQ 305 Query: 297 IYTNVNSKNGGDWM 310 IYT+V+ + D + Sbjct: 306 IYTHVDDEKLRDAV 319 >gi|183219889|ref|YP_001837885.1| putative integrase/recombinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910016|ref|YP_001961571.1| tyrosine site-specific recombinase XerC [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774692|gb|ABZ92993.1| Tyrosine site-specific recombinase XerC [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778311|gb|ABZ96609.1| Putative integrase/recombinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 428 Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 66/214 (30%), Positives = 106/214 (49%), Gaps = 20/214 (9%) Query: 96 KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155 ++F+ Y R + + L +K LP L+ ++ + +++ + + Sbjct: 203 QAFIFYF--RDVRQQMKHLKFPKIKSDVKLPEVLSAEETRAIFNSL----------PNIK 250 Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYY 214 + +L + Y GLR+SE + L ++I +++ +RI QGKG K R L S+ + EY Sbjct: 251 HKMLLLISYSAGLRVSEVIHLKTKDIDLERNMIRITQGKGKKDRYTILANSLVFELQEYL 310 Query: 215 DLCPFDLNLNIQ------LP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 + ++L L +P LF G KPL+ + Q + T H+LRH Sbjct: 311 KIREYNLLLKYSYNEVKNIPWLFPGAGTKPLHIRTAETIFNQAAAKAKITKKVTFHSLRH 370 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +FATHLL G DLR IQ++LGH + TTQIYT V Sbjct: 371 AFATHLLELGTDLRMIQTLLGHSSVRTTQIYTKV 404 >gi|148543984|ref|YP_001271354.1| tyrosine recombinase XerD subunit [Lactobacillus reuteri DSM 20016] gi|184153379|ref|YP_001841720.1| integrase/recombinase [Lactobacillus reuteri JCM 1112] gi|194467806|ref|ZP_03073792.1| integrase family protein [Lactobacillus reuteri 100-23] gi|227364897|ref|ZP_03848942.1| tyrosine recombinase [Lactobacillus reuteri MM2-3] gi|325682478|ref|ZP_08161995.1| integrase/recombinase XerD [Lactobacillus reuteri MM4-1A] gi|148531018|gb|ABQ83017.1| tyrosine recombinase XerD subunit [Lactobacillus reuteri DSM 20016] gi|183224723|dbj|BAG25240.1| integrase/recombinase [Lactobacillus reuteri JCM 1112] gi|194452659|gb|EDX41557.1| integrase family protein [Lactobacillus reuteri 100-23] gi|227070044|gb|EEI08422.1| tyrosine recombinase [Lactobacillus reuteri MM2-3] gi|324978317|gb|EGC15267.1| integrase/recombinase XerD [Lactobacillus reuteri MM4-1A] Length = 297 Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 78/292 (26%), Positives = 137/292 (46%), Gaps = 15/292 (5%) Query: 17 ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 E +L L+ ER LS TL SY+ D Q + +L E I +Q+ + + ++ Sbjct: 4 EVAAFLAFLKDERQLSDNTLMSYQRDLEQTVTYL-----EDRGIVDWQQVDHYLLIDLLN 58 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA---LNEKQ 133 R Q + ++ R +S ++ F KY+ + T N + M + + + + P A L EK+ Sbjct: 59 SLRQQGKANSTINRVISSLRQFYKYMIRHHNLT-INPMEMIDHQYTFNQPPAPVILTEKE 117 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 LL + I R+ A+L ++ G+R+SE ++L + D L++ GK Sbjct: 118 I-----EQLLAVPDVSTPIGLRDRALLEIMDATGMRVSEVIALDLTALHLDVKLLQLTGK 172 Query: 194 GDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 ++ R++PL K + +Y D P L + +F G PL + +++ Sbjct: 173 NERERMIPLSQPAVKWLTDYLDRGRPRLLRDEHETRVFLNAHGYPLTRQGIWKKMKEWVS 232 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + T T+R+SFA HL+ NG D++ IQ ILG+ + Q Y V+ + Sbjct: 233 EAKIKKEVTPQTMRYSFAVHLIENGADVQLIQEILGYNAMKALQPYLQVSPQ 284 >gi|187933384|ref|YP_001886557.1| tyrosine recombinase XerD [Clostridium botulinum B str. Eklund 17B] gi|187721537|gb|ACD22758.1| tyrosine recombinase XerD [Clostridium botulinum B str. Eklund 17B] Length = 292 Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 77/305 (25%), Positives = 139/305 (45%), Gaps = 41/305 (13%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLA-----FYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 + G S+ T+ +Y D +L FL Y +K+T+ A+I Sbjct: 14 DSGKSENTIYAYVTDVTLYLKFLDKKGIDVYKSDKLTVM-----------AYIQYLLESG 62 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV- 141 +RS+ R + ++SF YLK + + E + ++ K + LP+ L VD V Sbjct: 63 KSERSINRIVISLRSFYSYLKSQSLINEVPKIEYKSSKNNRKLPQILT-------VDEVD 115 Query: 142 -LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 ++ T + R++A+L L+Y G+++SE +SL +I + +R + R++ Sbjct: 116 KIIRTVEKDCPKGIRDNALLELMYATGMKVSELISLNVDDINLELHFVRCTDSRNFERLI 175 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP------LFRGIRGKPLNPGVFQRYIRQLRRYL 254 P+ S +A+ EY L++ ++ LF + G L R +++ + Sbjct: 176 PIGRSACRALNEY-------LSIRYKIAECGVPNLFVNLNGNKLTRQGIWRIVKEYSKRA 228 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 + +T RHSFA HLL NG ++R++Q +LG+ L+ Y + + D + IY Sbjct: 229 HIDKDVNLNTFRHSFAVHLLQNGANVRAVQKLLGNQVLTYMDTYYEIIN---NDKINFIY 285 Query: 315 DQTHP 319 THP Sbjct: 286 MNTHP 290 >gi|218295372|ref|ZP_03496185.1| integrase family protein [Thermus aquaticus Y51MC23] gi|218244004|gb|EED10530.1| integrase family protein [Thermus aquaticus Y51MC23] Length = 313 Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 116/228 (50%), Gaps = 16/228 (7%) Query: 81 QKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 ++ R ++ L+ ++S+ +YL + R + K LP ++ L ++ Sbjct: 82 ERWAPRRVQGFLAALRSYYRYLAQVRGEAVADPTEGIGRPKAGRRLPLHPAPEELLRFLE 141 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGDK 196 L E + + +A+ LYG GLRISEALSL +NI+ + +R+ GKG+K Sbjct: 142 A--LAQEKEARLL----TALARFLYGTGLRISEALSLKGKNIVQEGGRPVAVRVVGKGNK 195 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLG 255 R+VPL + + A+LE L P N+N+ +G RG+ + + R+ G Sbjct: 196 ERLVPLSRTAQSALLE---LGPPQGNVNV-FTFAQGRYRGRVPSARYVEAKFREAALRAG 251 Query: 256 L-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 L P T H LRH++AT L+ G L +++ +LGH ++TTQIY + + Sbjct: 252 LDPRRFTPHKLRHAYATFLVERGVQLDAVKDLLGHESIATTQIYLHAS 299 >gi|303242648|ref|ZP_07329122.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302589787|gb|EFL59561.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 298 Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 77/301 (25%), Positives = 143/301 (47%), Gaps = 41/301 (13%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 ++ L+ E+ +S T+ +Y D +QFL FL + + ++ IR +++ +T Sbjct: 10 FIDYLKAEKDVSHYTVDNYTSDFKQFLNFLRVNGIQP----KLNTVTTPIIRRYLAHLKT 65 Query: 81 QK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV- 138 K +++R + + S+ K+L +++ ++ + + K ++P+ L+ ++ L+ Sbjct: 66 DKNYAVETIRRRVHCLSSYYKFLMEQEYIMKNPMFAIHAPKSPETIPKYLSIEEIQLLLT 125 Query: 139 -------DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 D+VL RN I G+R E L L +I + + ++ Sbjct: 126 MPQKYSPDSVL------------RNLCIFECFLMTGMRRQELLDLNWDDIDFGEKIITVR 173 Query: 192 -GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL-----FRGIRGKPLNPGVFQR 245 GKG K R++P+ + + +Y L +LPL F +G L+ ++ Sbjct: 174 NGKGKKQRVIPMTEPLISDLWKY---------LQTRLPLTNHALFISAKGNRLSATPLEQ 224 Query: 246 YIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 R R GL T HTLRH++A+HL NG + SIQ +LGH L++TQIY +VN++ Sbjct: 225 TFRLYMRKSGLDKKGYTIHTLRHTYASHLALNGASILSIQKLLGHSDLNSTQIYAHVNTE 284 Query: 305 N 305 + Sbjct: 285 H 285 >gi|149194209|ref|ZP_01871307.1| Phage integrase [Caminibacter mediatlanticus TB-2] gi|149136162|gb|EDM24640.1| Phage integrase [Caminibacter mediatlanticus TB-2] Length = 268 Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 67/240 (27%), Positives = 124/240 (51%), Gaps = 34/240 (14%) Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL---NEKQALTLVD 139 + +++ + +S ++SF +LK+ + I+ ++K +LP+ + N K+AL + + Sbjct: 58 LSKKTIAKKVSVLRSFFDFLKQE--GYKFKIVGDEHIKVPKTLPKPISLENIKEALKVAN 115 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 +D + I+ ++ GLRISEAL++ +I D + I+GKG+K RI Sbjct: 116 ------------MDEYLAIIV--IFSLGLRISEALNIKLSDIHGDW--IEIKGKGNKTRI 159 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 +PL P +++ I +Y L +N + GK + + I++ + +G+ Sbjct: 160 LPLHPKLKEFIQKY-------LKINPKKEYLFEKDGKKYSENQLRYNIQKAFKKIGI--H 210 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 T H LRHSFAT++L G + + +LGH +STTQIYT +++ ++ Y + HP Sbjct: 211 ATPHQLRHSFATYMLDKGARINDVSELLGHEFISTTQIYTKLSN----SLKLKNYLKAHP 266 >gi|28210981|ref|NP_781925.1| site-specific tyrosine recombinase XerC [Clostridium tetani E88] gi|28203420|gb|AAO35862.1| putative integrase, recombinase [Clostridium tetani E88] Length = 328 Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 94/322 (29%), Positives = 153/322 (47%), Gaps = 37/322 (11%) Query: 6 LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE--------- 56 L I EL ++ N+L L + S T+ +Y+ D F FL Y + Sbjct: 4 LKNIYDPELPQQLNNFLNYLTTVKERSPNTMSAYKVDLVMFFRFLKLYKTKLPKDIEFDD 63 Query: 57 ----KITIQTIRQLSYTEI---RAFISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKIT 108 I + IR+++ T++ AF+ R G + R ++ +KSF K+L K KI Sbjct: 64 IDISDIDDEFIRKITLTDLYSFMAFLDNYRDN--GSYAKARKVATLKSFFKFLYSKVKIL 121 Query: 109 TESNILNMRN--LKKSNSLPRALNE-KQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165 E+ + + + +KK N L E K+ L +D AR+ I+ L Sbjct: 122 EENPAIELESPKIKKRNPTYLTLEESKRLLASIDGT----------NKARDYCIITLFLN 171 Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LN 224 CGLR+SE S+ I +D TL + GKG+K R + L + KA+ +Y + +L+ + Sbjct: 172 CGLRLSELCSIDISKIKED--TLYVIGKGNKERTIYLNKACLKAVEDYLKVRNKNLDKIK 229 Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG-DLRS 282 + LF +N + +++ + L T H LRH+ AT + +G D+RS Sbjct: 230 DKDALFISRNNTRINKRTVEIMLKKYLKKANLDEEKYTPHKLRHTAATLMYKHGDVDIRS 289 Query: 283 IQSILGHFRLSTTQIYTNVNSK 304 +Q ILGH +STTQIYT+V+++ Sbjct: 290 LQKILGHENISTTQIYTHVDNE 311 >gi|50123203|ref|YP_052370.1| site-specific tyrosine recombinase XerC [Pectobacterium atrosepticum SCRI1043] gi|50123212|ref|YP_052379.1| site-specific tyrosine recombinase XerC [Pectobacterium atrosepticum SCRI1043] gi|49613729|emb|CAG77180.1| probable integrase/recombinase [Pectobacterium atrosepticum SCRI1043] gi|49613738|emb|CAG77189.1| probable integrase/recombinase [Pectobacterium atrosepticum SCRI1043] Length = 350 Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 110/233 (47%), Gaps = 13/233 (5%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD-NVLLHTSHETK 150 L+GI+ ++L KR + + + K+ LP Q L++ + +L Sbjct: 99 LTGIRMLWRWLLKRHVILYNPAEMLTLPKEEKRLP-----AQVLSVEETGGVLQAMESGT 153 Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKA 209 + RN IL +L+ G+R +EA+SL +I + + + QGKG+K R+VPL K Sbjct: 154 VLGLRNRVILEVLWSSGVRRAEAVSLMLSDIDLSRGVMMVRQGKGNKDRVVPLGERACKW 213 Query: 210 ILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG-LPLSTTAHTLRH 267 + Y + P LF G L + + R G L H RH Sbjct: 214 LARYLNHARPALARRYDSGHLFISHNGTGLARVTLTKMAGKAIRETGHLDKPGACHVFRH 273 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 S AT +L NG D R IQ+ILGH +L TTQIYT V + + ++++QTHP+ Sbjct: 274 SMATQMLENGADTRHIQAILGHEKLETTQIYTRVAISH----LQKVHEQTHPA 322 >gi|330974049|gb|EGH74115.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 320 Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 76/288 (26%), Positives = 130/288 (45%), Gaps = 26/288 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W NL+ R T ++Y+ D F F+ + + R ++ + + A+ + Sbjct: 32 WFANLDNPR-----TRRAYQNDLTDFSSFIGLASADDF-----RLVTRSHVLAWRADLEH 81 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + +++R L+ + S +L + N ++ K S NE + L D+ Sbjct: 82 RGLAGATIRRKLAALASLFDHLLENNAIAGGNPVHGVKRPKIES-----NEGKTPALGDH 136 Query: 141 ---VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGD 195 LL E+ R+ AIL +L GLR EA L +I + + L+I GKG Sbjct: 137 QAKALLDAPDESTLKGLRDRAILAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKGG 196 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV----FQRYIRQLR 251 K+R +PL P I Y + L+ + ++PLF +RGKP GV + Sbjct: 197 KVRYLPLHPVAAGRIHLYLERSGHHLD-DKKVPLFIPLRGKPTGAGVSANGIYTVVEAYA 255 Query: 252 RYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + G+ ++ H LR + AT+ L + D+ +Q+ LGH +STT+IY Sbjct: 256 KKAGIEVAGLGVHGLRATAATNALDHEADIAKVQAWLGHANISTTKIY 303 >gi|323704109|ref|ZP_08115704.1| integrase family protein [Desulfotomaculum nigrificans DSM 574] gi|323530929|gb|EGB20873.1| integrase family protein [Desulfotomaculum nigrificans DSM 574] Length = 290 Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 77/284 (27%), Positives = 140/284 (49%), Gaps = 27/284 (9%) Query: 49 FLAFYTEEK------ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102 FL F +EK + ++ + + + +I ++R R++ L+ + SF +YL Sbjct: 1 FLTFMKDEKGILADKVMLKHVNKEIVVDFLDWIEEKRHCCAATRNV--PLAALHSFFQYL 58 Query: 103 KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD----NVLLHTSHETKWIDARNSA 158 + + + N+L + + S+P EK +++ + +LL + R+ A Sbjct: 59 QYQ---SPENLLEWQRIL---SIPVKKTEKPSISYLSLEGIRLLLEQPDCSTRNGRRDLA 112 Query: 159 ILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 +L L+Y G R+ E + LTP + +D T+++ GKG+K R+VPLL V+ L+ Y + Sbjct: 113 LLSLMYDSGARVQEIIDLTPSMVRLDVPCTVKLIGKGNKSRVVPLL-DVQVKFLKTYMVE 171 Query: 218 PFDLNLNIQL-PLFRGIRGKPLNPG----VFQRYIRQ--LRRYLGLPLSTTAHTLRHSFA 270 L + L PLF R + L + ++Y +Q L+ +P + H LRHS A Sbjct: 172 QKLLEPHANLYPLFSNSRKEKLTRAGVNYILEKYAKQARLKNPTLIPEKLSCHCLRHSKA 231 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 HLL +G +L I+ ILGH + T++Y +S+ + + + Y Sbjct: 232 MHLLQSGVNLVYIRDILGHTSVQVTEVYARTDSRQKREAIEKAY 275 >gi|307354005|ref|YP_003895056.1| integrase family protein [Methanoplanus petrolearius DSM 11571] gi|307157238|gb|ADN36618.1| integrase family protein [Methanoplanus petrolearius DSM 11571] Length = 302 Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 78/311 (25%), Positives = 135/311 (43%), Gaps = 52/311 (16%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAF---YTEEKITIQ-------------TIRQLSYTEIR 72 R S T+ SYE ++F +L +EK+ I + + Sbjct: 20 RNFSPRTIASYEGAVKKFGYYLWIRRNMGQEKLVIYWNDLANARLDTEIDTTPMMINDFL 79 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 AF++ R K +L+R +S + SF +Y + + + + + K R L Sbjct: 80 AFLTSLRDYKAT--TLQRIISSLSSFYRYCYTQGVVDSNPLAAIDRPKIKEKELRYLKHN 137 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 Q L+L +++ + R+ I+ +Y G+R+SE S+ ++I + +R++G Sbjct: 138 QVLSLFNSIN----------NERDRLIIRTIYATGVRVSELCSINIEDIDFEDRIIRVKG 187 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP----GVFQRYIR 248 KG KIR V + + I Y + I PLF G +GK ++P +F+RY Sbjct: 188 KGGKIRTVFIDEDTLQDINHY-------TSGRISGPLFEGQQGKNISPRTVQHIFERY-- 238 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 P T H +RHS+A+ L +LR +Q LGH + TT++Y + + D Sbjct: 239 -------APTGITPHKIRHSYASELYRRSKNLRVVQENLGHSSIQTTEVYLHTDI----D 287 Query: 309 WMMEIYDQTHP 319 E+Y + P Sbjct: 288 ERREVYKKYFP 298 >gi|213585520|ref|ZP_03367346.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 259 Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 73/263 (27%), Positives = 126/263 (47%), Gaps = 15/263 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ER L++ TL +Y D + +L + T Q +++ +++R Sbjct: 9 EQFLDALWLERNLAENTLSAYRRDLSMVVAWLHHRGKTLATAQA------DDLQTLLAER 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ F ++L + K + + + K LP+ L+E Q L+ Sbjct: 63 VEGGYKATSSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQVERLL 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L+ ++ R+ A+L +LY GLR+SE + LT +I Q +R+ GKG+K R Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177 Query: 199 IVPLLPSVRKAILEYYDLC-PFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +VPL + Y + P+ LN ++I + LF R + + F I+ G+ Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 Query: 257 PLST-TAHTLRHSFATHLLSNGG 278 + H LRH+FATHLL++G Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGA 259 >gi|39997562|ref|NP_953513.1| bifunctional hypothetical protein/integrase [Geobacter sulfurreducens PCA] gi|39984453|gb|AAR35840.1| hypothetical protein/integrase, fusion [Geobacter sulfurreducens PCA] gi|298506503|gb|ADI85226.1| integrase domain protein [Geobacter sulfurreducens KN400] Length = 457 Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 80/310 (25%), Positives = 132/310 (42%), Gaps = 59/310 (19%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ-LSYTEIRAFISKRRTQKIGDRS 87 R S+ TLQ+Y RQF FL ++T +++ L++ ++ + + Sbjct: 155 RHYSRKTLQTYAKWCRQFQRFLKNKPPVELTTADVKEYLTWLAVKC--------NVAAST 206 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 ++ + + ++ KR + ++ KKS +P L+ + +D +L H H Sbjct: 207 QNQAFNSLLFLFRHALKRDF---GELRDVPRAKKSLYVPVVLSRAE----IDAILAHLYH 259 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV- 206 + I+ LL+GCGLR+ E L L ++ D L + GKG K R +PL S+ Sbjct: 260 P-------HGLIVKLLFGCGLRLFECLQLRVRDFNFDAGILTVHGKGKKDRTLPLPESIL 312 Query: 207 --------------RKAILEYYDLCPFDLNLNIQLP----------LFRG---------- 232 K + + YD D + + P F Sbjct: 313 NDLQRQMRRVKELHEKDLEQGYDGVFLDDAMEKKYPKAPKELIHQWFFPQKDLTPVEANG 372 Query: 233 -IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291 +R ++ + Q+ + R +P TAHT RHS+ATHLL D+R+IQ+ LGH Sbjct: 373 QLRRAHVHESLLQKALYLAVRKAKIPKRVTAHTFRHSYATHLLQANYDIRTIQTKLGHAS 432 Query: 292 LSTTQIYTNV 301 L TT IYT+ Sbjct: 433 LKTTMIYTHC 442 >gi|302387141|ref|YP_003822963.1| integrase family protein [Clostridium saccharolyticum WM1] gi|302197769|gb|ADL05340.1| integrase family protein [Clostridium saccharolyticum WM1] Length = 339 Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 86/308 (27%), Positives = 146/308 (47%), Gaps = 29/308 (9%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTE------EKITIQTIRQLSYTEIRAFISKRRTQK 82 + +SK T+ SY CDT F + L + + EKI+++ I ++ ++ + R Sbjct: 22 KNVSKNTISSY-CDT--FRLLLKYCRDVHNLSIEKISMKDIDADLVSQFMLWLEEERHCG 78 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 I R+ + L I+SF +Y++ + N+LN + + ++L LT+ + L Sbjct: 79 ISTRN--QRLMAIRSFFRYVQGEQ---PQNLLNCQKVLNIPPKKKSLPVVTYLTVEEMKL 133 Query: 143 LHTSHETKWIDARNS-AILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIV 200 L T + R A+L +LY G R+ E LT +NI +++ + + + GKG K R V Sbjct: 134 LLAQPNTSTPEGRRDLALLCILYDTGGRVQEIADLTVRNIRLENPAKVHLTGKGRKSREV 193 Query: 201 PLLPS----VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG----VFQRYIR-QLR 251 PLLP + + ++E+ L P + PLF L + +Y Sbjct: 194 PLLPRTVQLLERYMIEHRLLAPEKQDH----PLFCNRHNSKLTRSGISYILNKYAELASS 249 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 + L P S + H LRH+ A HLL G ++ I+ ILGH + TTQIY + N++ + Sbjct: 250 QSLTFPESISPHVLRHTKAMHLLQAGVNIIYIRDILGHASVDTTQIYASANTQMKRAALE 309 Query: 312 EIYDQTHP 319 ++ D P Sbjct: 310 KLGDSPAP 317 >gi|332971298|gb|EGK10261.1| tyrosine recombinase XerC [Desmospora sp. 8437] Length = 302 Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 77/295 (26%), Positives = 134/295 (45%), Gaps = 27/295 (9%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 N+L +L+++ G S+ TL++YE QF+ + T E + + + E + ++ R Sbjct: 15 NFLFDLKLD-GRSQKTLKTYEGVIHQFIQWFEETTGETFDPENVTPIDAAEYKQYLMNRS 73 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 ++ ++ +K + +L K+++ ES +R +K+ PR L+ K+ Sbjct: 74 KPA----TVNKTRIALKRYFDWLVKQEMLKESPWSAIRPVKQGRRAPRWLDRKE-----Q 124 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDK 196 LL + + R+ AI+YLL GLR+ E L +++ + ++ QGKG K Sbjct: 125 RALLRAVQQGR--KPRDIAIVYLLLHTGLRVEELCLLRLEDVEMSERKGKVIVRQGKGGK 182 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 R VPL VRKA+ + ++ P LF R + + P Q +R+ + L Sbjct: 183 WREVPLNRDVRKALESWLEVRPASSPW-----LFVSTRSERMTPRAVQFVVRKYGQRAEL 237 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF------RLSTTQIYTNVNSKN 305 T H LRH+F L G L I + GH ++TT IYT ++ Sbjct: 238 E-HCTPHVLRHTFCHELAIKGVSLDVIAMLAGHMTADGRPNIATTAIYTTPGDQD 291 >gi|307265141|ref|ZP_07546700.1| tyrosine recombinase XerD [Thermoanaerobacter wiegelii Rt8.B1] gi|306919763|gb|EFN49978.1| tyrosine recombinase XerD [Thermoanaerobacter wiegelii Rt8.B1] Length = 290 Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 76/285 (26%), Positives = 133/285 (46%), Gaps = 19/285 (6%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 TL+SY D QFL +L E I +++ + ++ K+ + ++ R+LS Sbjct: 23 TLESYNRDINQFLNYLE---EIGINCYNVKKSTILNYLYYLKKKGKSQA---TVSRNLSS 76 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 +K+F YL +K E + K P L +Q ++LL Sbjct: 77 LKAFYHYLFMKKKIEEDPTYMINTPKVEKKQPTTLTVEQV-----DMLLSLDFGDDEKGL 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ A++ LLY GL++SE +SL +++ + I + +K R++P+ +A+ Y Sbjct: 132 RDKALIELLYATGLKVSEVISLKLEDVNLSYGYVVI--RSNKERVIPIGSHAIEALKNYI 189 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 + N + LF +RG+ L + IR+ + T +TLR SFA H+L Sbjct: 190 E--KGRKAKNGENTLFLNLRGQKLTRQGCWKIIREYTDKINPGFPVTPNTLRQSFAQHML 247 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 NG D+R++Q +LG+ T + TN+ S + E+Y++ HP Sbjct: 248 QNGADIRAVQEMLGY----QTDLNTNLLSLISKSKIKEVYNKFHP 288 >gi|258515456|ref|YP_003191678.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] gi|257779161|gb|ACV63055.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] Length = 345 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 80/283 (28%), Positives = 137/283 (48%), Gaps = 20/283 (7%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE--IRAFISKRRTQKIGDRS 87 G S T++SY+ F +L Y E I++ + + I+ FI + + Sbjct: 29 GRSSKTIKSYKDSLTVFRRYL--YDECHISVAAFKFADCNQKCIQEFIIYLKDNNNSPGT 86 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL-VDNVLLHTS 146 + L+ +KS+L + R I +S L++ + + +P+ EK+ LT +L Sbjct: 87 CNQRLTALKSYLWFAADRDIAVQSVALSISKIPQCK-IPK--KEKETLTEEALAAILQQP 143 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLP 204 TK + R+ I+ LLY +R+ E L LT +++ D +RI GKG+K RIV + P Sbjct: 144 PNTK-MGLRDRVIMILLYDSAVRLDELLCLTLKDLSLRTDNPYIRISGKGNKERIVAITP 202 Query: 205 SVRKAILEYYDLC-PFDLNLNIQLPLFR--GIRGKPLNPGVFQRYIRQL-----RRYLGL 256 + + +Y + DLN++ L + R G+ + ++PG +R+I+Q + L + Sbjct: 203 KTAEHLKQYLSVYHKNDLNMDQYLFITRIKGVTDR-MSPGNVERFIKQYANSAREKCLQI 261 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 PL H R + AT L NG +L + ILGH TT++Y Sbjct: 262 PLKVYPHMFRRTRATDLYQNGVELELVSRILGHSSTETTKVYA 304 >gi|304316827|ref|YP_003851972.1| integrase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778329|gb|ADL68888.1| integrase family protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 327 Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 33/307 (10%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE------------EKITIQ 61 +L+E N+ + + S T+++YE D F F+ + I Sbjct: 14 ILEEFLNYFSTI---KARSPNTVKAYEYDLVLFFRFIKVRKNLSSDSDFDQIDISDVDIS 70 Query: 62 TIRQLSYTEIRA---FISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNMR 117 I + ++ A F++ R+ R+ R ++ ++SF YL KRK+ T++ L + Sbjct: 71 LIESIDLNDLYAYLSFVTHERSNTPPARA--RKVASLRSFYNYLYAKRKVITKNPALELE 128 Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 + K P L +++ L+D++ R+ AI+ L CGLR+SE ++ Sbjct: 129 SPKLGIRQPVYLTLDESMKLLDSI-------DGPFKERDYAIITLFLNCGLRLSELANIN 181 Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +I DD+ L + GKG+K R V L + AI EY + P D + + LF R + Sbjct: 182 ISDIKDDK--LTVIGKGNKQRTVYLNDACISAINEYLKVRPHD-GVKDKKALFLSKRLQR 238 Query: 238 LNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTT 295 ++ Q +++ + L + H LRH+ AT + G D+R++Q +LGH +STT Sbjct: 239 ISIKTIQYIVKKHLKDANLDGKKYSTHKLRHTAATLMYRYGKVDIRTLQRLLGHSNVSTT 298 Query: 296 QIYTNVN 302 QIYT+V+ Sbjct: 299 QIYTHVD 305 >gi|87125131|ref|ZP_01080978.1| integron integrase [Synechococcus sp. RS9917] gi|86167451|gb|EAQ68711.1| integron integrase [Synechococcus sp. RS9917] Length = 323 Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 82/311 (26%), Positives = 146/311 (46%), Gaps = 61/311 (19%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRS 87 R ++ T+ +YE R+FL F ++ R++ E+ AF++ + K+ + Sbjct: 21 RHYARRTVATYEQWLRRFLRFHG--------MRHPREMGSAEVNAFLTHLAVEGKVSAST 72 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 ++LS + FL + ++ R ++ LP L+E + V V LH Sbjct: 73 QNQALSAL-LFLYRELLERDLELEGVVRARTRRR---LPVVLSEAE----VRAVRLH--- 121 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKG--DKIRIVP--L 202 ++ + ++ LLYG GLR+ EAL L +++ ++ L ++ GKG D++ ++P L Sbjct: 122 ----LEGVPALVVGLLYGSGLRLMEALRLRVKDLDFERRELTVRDGKGGKDRMTLLPQSL 177 Query: 203 LPSVRKAILEYYDLCPFDLNLN---IQLPL----------------------------FR 231 +P +R+ +L L DLN + +P Sbjct: 178 VPELRQHLLVVRQLHRADLNAGWGKVLMPYALARKYPHADREWGWQWVFPQQRRWRDSVS 237 Query: 232 GIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290 G +G+ ++P + Q+ ++Q + + + HT RHSFATHLL G D+R+IQ +LGH Sbjct: 238 GQQGRHHIDPALVQKAVKQAVAEAAVTKAASCHTFRHSFATHLLERGQDIRTIQELLGHQ 297 Query: 291 RLSTTQIYTNV 301 + TT IYT+V Sbjct: 298 DVCTTMIYTHV 308 >gi|309805934|ref|ZP_07699964.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 03V1-b] gi|309807630|ref|ZP_07701574.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 01V1-a] gi|308167673|gb|EFO69822.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 03V1-b] gi|308169127|gb|EFO71201.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 01V1-a] Length = 204 Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 57/177 (32%), Positives = 90/177 (50%), Gaps = 26/177 (14%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP------------L 202 RN A+L L Y G+R+SE +L + + + + + GKG+K R V L Sbjct: 33 RNMALLELFYATGMRVSEIANLKLDQVDFELNLILVHGKGNKDRYVAFGEEAKTALNNYL 92 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 + + +K +L D LN N + RG+ + I+ + G+ S Sbjct: 93 VEARKKLLLHKTDYGYVFLNSNGNMITSRGL----------EYIIKNIFLNAGISASVHP 142 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRH+FAT +L+NG DLR++Q +LGH +STTQIYT+V ++ + +IY + P Sbjct: 143 HMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQH----LCDIYHKYFP 195 >gi|307322976|ref|ZP_07602243.1| integrase family protein [Sinorhizobium meliloti AK83] gi|306891378|gb|EFN22297.1| integrase family protein [Sinorhizobium meliloti AK83] Length = 292 Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 106/228 (46%), Gaps = 28/228 (12%) Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 +K+ S+ ++S ++ F +R E +L +K LP L+ + + Sbjct: 59 KKLAPNSIHIAISALRFFFSVTLERDWVPEEVLLP----RKPQKLPIILSPDEVQQFLGC 114 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRI 199 VL D ++ AIL Y GLRISEA+ L +I + +R+ QGKG K R Sbjct: 115 VL----------DLKHHAILTTCYAAGLRISEAVHLKTTDIDSQRMVVRVEQGKGQKDRY 164 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIR-GKPLNPGVFQRYIRQLRRYLG 255 V L P + + + +Y+ ++ P LF G R G P+ + + Sbjct: 165 VMLSPKLLEILRDYW---------RMRRPKEWLFPGDRTGHPITRDAVGQACAKAHDLSR 215 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 L T H+LRH+FA HLL G D+R+IQ +LGH L+TT Y + + Sbjct: 216 LSKPVTPHSLRHAFAVHLLEAGADVRTIQLLLGHRSLATTAHYLRIAT 263 >gi|332884391|gb|EGK04654.1| hypothetical protein HMPREF9456_03396 [Dysgonomonas mossii DSM 22836] Length = 336 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 77/282 (27%), Positives = 130/282 (46%), Gaps = 13/282 (4%) Query: 29 RGLSKLTLQSYECDTRQFLIFL---AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85 R LSK T+ SY R +I+ EK+T++ I S ++ K R + + Sbjct: 23 RNLSKNTISSYSDTFRLLVIYFNDQQSIPPEKLTLKNINDKSVCNYLDWLQKER--RCSN 80 Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD-NVLLH 144 + + L+ I SF +YL+ + + + + S+ LN LT+ + LL Sbjct: 81 TTRNQRLAAIHSFFRYLQMQDSKQLLSCQKVMQIPFKKSVQPILNH---LTISQVSSLLR 137 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLL 203 K + R+ A+L +LY G R+ E L +N+ ++ ST+ + GKG K R++P++ Sbjct: 138 QPDINKKGERRDIALLSVLYDTGARVQELCDLKVRNVRLEPPSTITLTGKGCKTRLIPIV 197 Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL---GLPLST 260 + K + Y + + PLF R + L+ G +R+ + +P Sbjct: 198 GNTVKLLTNYIEENKLTGTHKLDHPLFYNQRRQALSRGGITHILRKYAHMVKDKNMPEKI 257 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 T H LRHS A HLL G + I+ LGH + TT+IY ++ Sbjct: 258 TPHILRHSKAMHLLQAGYTMVVIRDWLGHVSVQTTEIYATLD 299 >gi|148264912|ref|YP_001231618.1| phage integrase family protein [Geobacter uraniireducens Rf4] gi|146398412|gb|ABQ27045.1| phage integrase family protein [Geobacter uraniireducens Rf4] Length = 279 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 112/239 (46%), Gaps = 22/239 (9%) Query: 66 LSYTEIRAF-ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 LS ++R F + + +K + LSGIK F + +RK + + + KS Sbjct: 43 LSEDDVRGFFLHLLKVRKAARSTFTIYLSGIKFFFETTLQRKWS----VFGITKPAKSKR 98 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 LP L+ K+ TL+ ++ + R L ++Y CGLR+SE L ++I Sbjct: 99 LPVVLSRKEVRTLLKSI----------KNPRVKMALTIIYACGLRLSEGARLKVKDIDSG 148 Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 + L ++ GKG K R VPL + + +Y L F P G +N Sbjct: 149 RKLLWVRDGKGMKDRCVPLPKRPLELLQTHYRL--FGAGSEYLFPSGDG----HINICTI 202 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 Q R R + + T HTLRHS+ATHLL NG D +++ ILGH ++TT IY ++ Sbjct: 203 QTAFRVAVRKSDIGKTATVHTLRHSYATHLLENGEDSATLKEILGHSSITTTNIYLHMT 261 >gi|259909803|ref|YP_002650159.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|224965425|emb|CAX56957.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96] Length = 351 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 91/318 (28%), Positives = 141/318 (44%), Gaps = 23/318 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI--RAFIS 76 ++WL +L + G S T Q Y R FLA+ IT L+ E R Sbjct: 26 ESWLAHLVVA-GRSARTAQGYGERVR---AFLAWCEPRGITYAPQVSLAVLEAYQRWLQG 81 Query: 77 KRRT---QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNEK 132 RR Q + + L R LS ++ ++L KR S + K+ LP + +E Sbjct: 82 YRRADGKQLVVNSQLHR-LSAVRMLFRWLLKRHHILYSPAEQLELPKEERRLPAQVFSEA 140 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ- 191 + ++ ++ T RN AIL LL+ G+R SE L ++ + + ++ Sbjct: 141 ETRRVLQSLDAGTP-----PGLRNRAILELLWSSGIRRSELAGLLLSDVDFTRGVVNVRR 195 Query: 192 GKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQ 249 GKG K R+VP+ + + Y D+ P LF +G L G R Sbjct: 196 GKGGKDRVVPVGHTALMWLARYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGRA 255 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 +R L + H RH+ AT +L NG D R IQ+ILGH +L TTQIYT V + Sbjct: 256 IRSGAHLKKAGACHIFRHTMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGH---- 311 Query: 310 MMEIYDQTHPSITQKDKK 327 + +++ THP+ ++ +K Sbjct: 312 LQKVHAHTHPAEKRRTEK 329 >gi|16519918|ref|NP_444038.1| DNA integration/recombination/inversion protein [Sinorhizobium fredii NGR234] gi|2497415|sp|P55632|Y4QK_RHISN RecName: Full=Putative integrase/recombinase y4qK gi|2182597|gb|AAB92466.1| DNA integration/recombination/inversion protein [Sinorhizobium fredii NGR234] Length = 308 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 108/230 (46%), Gaps = 31/230 (13%) Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 +K+ S+ +++ ++ F +R + +L + KK LP L+ + + Sbjct: 75 KKLAPNSIHIAIAALRFFFSVTLERDWVP-AEVLPLP--KKPQKLPIILSPDEVQHFLGC 131 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRI 199 VL D ++ AIL Y GLRISEA+ L P +I + +R+ QGKG K R Sbjct: 132 VL----------DLKHHAILTTCYAAGLRISEAVQLKPTDIDSQRMVVRVEQGKGQKDRY 181 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIR-GKPLNPGVFQRYIRQLRRY 253 V L P + + + +Y+ ++P LF G R G P+ + + Sbjct: 182 VMLSPKLLEILRDYW-----------RMPRPKEWLFPGDRAGHPITRDAVGQACAKAHDL 230 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 L T H+LRH+FA HLL G D+R+IQ +LGH L+TT Y + + Sbjct: 231 SRLSKPVTPHSLRHAFAVHLLEAGADVRTIQLLLGHRSLATTAHYLRIAT 280 >gi|124485609|ref|YP_001030225.1| formylmethanofuran dehydrogenase subunit E-like protein [Methanocorpusculum labreanum Z] gi|124363150|gb|ABN06958.1| phage integrase family protein [Methanocorpusculum labreanum Z] Length = 320 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 60/225 (26%), Positives = 105/225 (46%), Gaps = 22/225 (9%) Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 R +++ SL++ S + SF YL + IT + + + K + + L + + Sbjct: 100 RNERQLSPASLRQYDSALSSFYGYLINQDITEANPMTKVDRPKIKDRELKYLKHNEVVAF 159 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 ++++ + RN+ ++ +Y G+RISE L ++I ++ T+R++GKG KI Sbjct: 160 INSIE----------NPRNALLIRTIYATGMRISEICGLLAEHIDFEEETIRVRGKGGKI 209 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 RIV I E+ LN P+F G G ++P Q + P Sbjct: 210 RIVFCDSDTLNKIREH-------LNGKKSGPVFEGRNGNAISPRTVQHIFN-----IYAP 257 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 T H +RHS+A+ L +LR +Q LGH + TT+IY + + Sbjct: 258 PGITPHKIRHSYASELYKRSHNLRVVQENLGHNSIQTTEIYIHTD 302 >gi|16519719|ref|NP_443839.1| putative integrase/recombinase of undefined transposable element [Sinorhizobium fredii NGR234] gi|2497416|sp|P55429|Y4EF_RHISN RecName: Full=Putative integrase/recombinase y4eF gi|2182375|gb|AAB91651.1| putative integrase/recombinase of undefined transposable element [Sinorhizobium fredii NGR234] Length = 251 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 105/225 (46%), Gaps = 21/225 (9%) Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 +K+ S+ +LS ++ F +R E +L + KK LP L+ + + Sbjct: 18 KKLAPGSIHIALSALRFFFNVTLERDWAPE-EVLPLP--KKPQKLPIILSPDEVQHFLGC 74 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRI 199 V D ++ AIL Y GLRISEA+ L P +I + +R++ GKG K R Sbjct: 75 V----------ADVKHHAILTTCYAAGLRISEAVQLKPTDIDSQRMVVRVEHGKGQKDRY 124 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPL 258 V L P + + + +Y+ + + LF G R G P+ + + L Sbjct: 125 VMLSPKLLEILRDYWRM------WRPEAWLFPGDRAGHPITRYAVGQACVKPHDLSRLSK 178 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 T H+LRH+F HLL G D+R+IQ +LGH L+TT Y + + Sbjct: 179 PVTPHSLRHAFVVHLLEAGADVRTIQPLLGHRSLATTAHYLRIAT 223 >gi|159046171|ref|YP_001541843.1| integrase family protein [Dinoroseobacter shibae DFL 12] gi|159046203|ref|YP_001541875.1| integrase family protein [Dinoroseobacter shibae DFL 12] gi|157913930|gb|ABV95362.1| phage integrase [Dinoroseobacter shibae DFL 12] gi|157913962|gb|ABV95394.1| phage integrase [Dinoroseobacter shibae DFL 12] Length = 290 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 85/291 (29%), Positives = 129/291 (44%), Gaps = 32/291 (10%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 R+ +++++ I +GL T Y R F FL ++ + T + E+RAF Sbjct: 10 RRRFIEDMRI-KGLQPKTQTMYLRAMRDFTGFLG-HSPDSATPE--------ELRAFQLD 59 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 + + +G + L+ + F R +MR + + +P L+ ++ + Sbjct: 60 MKEKGVGAPTFNNRLTVLSFFYATTCPRPEMKR----HMRYQRAAKKIPVVLSAEEVTRI 115 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196 ++ R A + YG GLR SE L +I D+ +RI QGKG K Sbjct: 116 LEAA--------PGPGLRYRAAFSVAYGGGLRASEVTHLKIGDIDSDRMLIRIDQGKGRK 167 Query: 197 IRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYL 254 R V L PS+ + +YY + P LF G R P++ F R + Sbjct: 168 DRHVMLSPSLLVLLRDYYREARPAGW-------LFPGRNRVDPISTRQFNRAFGVACDFA 220 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + + HTLRHSFATHLL G D+R IQ +LGH +L TT IYT V K Sbjct: 221 EIKKRVSPHTLRHSFATHLLEGGTDIRVIQVLLGHAKLETTTIYTKVAIKT 271 >gi|330900232|gb|EGH31651.1| Phage integrase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 320 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 77/289 (26%), Positives = 133/289 (46%), Gaps = 28/289 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W NL+ R T ++Y+ D F F+ + ++ R ++ + + A+ ++ Sbjct: 32 WFANLDNPR-----TRRAYQNDLEDFCGFVGLASADEF-----RVVTRSHVLAWRAQLEH 81 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVD 139 + + +++R L+ + S +L ESN + N P+ NE + L D Sbjct: 82 RGLAGATIRRKLAALASLFDHL------LESNAIAGGNPVHGVKRPKIESNEGKTPALGD 135 Query: 140 N---VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194 + LL ET R+ A+L +L GLR EA L +I D + L++ GKG Sbjct: 136 HQAKALLEAPDETTLKGLRDRALLAVLLYHGLRREEAALLQVSDIQDRRGIQHLKVHGKG 195 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL---- 250 K+R +PL P I +Y + L + ++PLF +RGK G+ I + Sbjct: 196 GKVRYLPLHPVAAGRIHQYLESSEHHLT-DRKVPLFIPLRGKLTGAGITANGIYTVVAAY 254 Query: 251 RRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + G+ ++ H LR + AT+ L + D+ +Q+ LGH +STT+IY Sbjct: 255 AKMAGIEVAGLGVHGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303 >gi|29348044|ref|NP_811547.1| putative integrase/recombinase [Bacteroides thetaiotaomicron VPI-5482] gi|29339946|gb|AAO77741.1| putative integrase/recombinase [Bacteroides thetaiotaomicron VPI-5482] Length = 330 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 84/284 (29%), Positives = 132/284 (46%), Gaps = 22/284 (7%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLS 93 TL SY Q+L F+A T + I L+ AF++ T K ++ + L+ Sbjct: 32 TLTSYRDYYMQYLPFVAKRTGKHADKLLITDLTVERTNAFLNHIETDKGCTIQTRNQRLT 91 Query: 94 GIKSFLKYL--KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD----NVLLHTSH 147 IKSF+ Y+ + S +++ +KK + A++ +D + LL+T Sbjct: 92 AIKSFVHYVYNNAPEYMEWSRLMSTIPMKKVKVKVIEGSVLPAVSYLDKREMDALLNTPD 151 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGKGDKIRIVPLLP 204 ++ A+L LY G+R SEA SLT +I+ D ++ +RI GKG+K R PL Sbjct: 152 RQTVQGRKDYAMLLFLYNTGVRASEAASLTIGSIIYDDASCPLVRIYGKGNKSRTCPLWN 211 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLS---- 259 AI PF +F G P+ G+++ R + + + Sbjct: 212 RTLNAIK------PFMAGRRETERVFLNRYGNPMTRFGIYELLERNVIKATATAPTLAKK 265 Query: 260 -TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + HTLRH+ A HL +G D+ +IQS LGH L+TT IYT V+ Sbjct: 266 RVSPHTLRHTAACHLYESGNDIVTIQSWLGHVSLNTTNIYTEVS 309 >gi|301312479|ref|ZP_07218393.1| tyrosine recombinase XerD [Bacteroides sp. 20_3] gi|300829545|gb|EFK60201.1| tyrosine recombinase XerD [Bacteroides sp. 20_3] Length = 314 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 77/296 (26%), Positives = 130/296 (43%), Gaps = 30/296 (10%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L + + E+ L++ T+ +Y D L Y E Q+S ++ ++ Sbjct: 15 DFLFHCQYEKNLNEKTIYAYRSD----LYMFNRYIHELYPSVVFEQVSKDMLKTYLQHIS 70 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLV 138 T K +++KR L+ +K+ Y + LN R L+ P L V Sbjct: 71 TYK--PKTVKRKLASLKALFNYYD----FEHDDFLNPFRKLRIRFKEPYVLPTVMTCNEV 124 Query: 139 DNVLLH----------TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 +L + T R+ A++ LL+ G+R+SE L+ + Q+T+ Sbjct: 125 KEILKYLYKLRADNPDTGGYAYKAQTRDIAVVELLFATGIRVSELCELSCDAVDLKQATI 184 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 ++ GKG K R++ + IL Y P F G L+ + Sbjct: 185 KVFGKGSKERVIQICSVEVLKILRQYQRLFAPSKC-------FFINRLGNRLSSQSVRLL 237 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 I++ R +G+ T HT RH+FAT LL D++ IQ++LGH ++TTQIYT+VN Sbjct: 238 IKRCREEIGIGKKITPHTFRHTFATLLLEEDVDIKYIQNLLGHSSITTTQIYTHVN 293 >gi|268609330|ref|ZP_06143057.1| site-specific tyrosine recombinase XerC [Ruminococcus flavefaciens FD-1] Length = 327 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 89/324 (27%), Positives = 161/324 (49%), Gaps = 35/324 (10%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE----- 55 M N P+ + E L E +L ++++ + LS+ T+Q Y D R FL F+ + Sbjct: 1 MNNYNTPD--NPEFLNE---YLVHIKLVQLLSERTIQGYYEDIRLFLRFIYMNSHNIDDS 55 Query: 56 -EKITI-----QTIRQLSYTEIRAFI---SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK 106 E I I +R+++ ++I FI S R D++ R +S ++SF KYL+K Sbjct: 56 PENIDISDFPEDDLRKITVSDIYNFIFYVSDERHN--NDKARYRKISSLRSFFKYLEKAA 113 Query: 107 ITTESN---ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163 E + L++ KKS LP+ L+ +++ L L S R+ I+ L Sbjct: 114 HIIEKDPTKDLDVPVPKKS--LPKFLSLNESMRL-----LQASDNADS--KRDYCIITLF 164 Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223 CG+R+SE + + +I ++ +R+ GKG+K R++ L + A+ +Y + + Sbjct: 165 LNCGIRLSELVGINISDIDFYENRMRVLGKGNKERMIYLNEACVDALNKYLIIRRDNQKA 224 Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNG-GDLR 281 +L LF + K ++ Q+ + GL T H LRH+ AT + G D+ Sbjct: 225 KAELALFISNQNKRISKRRVQQIVENTLTAAGLDGKGITTHKLRHTAATLMYQYGDADVL 284 Query: 282 SIQSILGHFRLSTTQIYTNVNSKN 305 +++ +LGH ++TT+IYT+++++N Sbjct: 285 TLKELLGHASVATTEIYTHLSNEN 308 >gi|42527350|ref|NP_972448.1| DNA integrase [Treponema denticola ATCC 35405] gi|41817935|gb|AAS12359.1| DNA integrase [Treponema denticola ATCC 35405] Length = 335 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 91/325 (28%), Positives = 143/325 (44%), Gaps = 59/325 (18%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 N L+ + + SK T+++Y +F+ E K + ++ LS TEI AF+S+ Sbjct: 22 NKLEEVITAKHYSKRTMEAYSYWISRFI------RENKN--KNLKTLSDTEINAFVSRLA 73 Query: 80 T-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 +K S ++L+ + K + I T NI+ + KK LP A+ ++ + Sbjct: 74 VKEKAAASSQNQALAALLFLYKNILGLTIKTPENIVRAKKPKK---LP-AIMTREETAKI 129 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKI 197 ++L + ++ LLYG G+R+ EAL L Q+I ++ + + GKG K Sbjct: 130 FSLLPENDY---------GLLIRLLYGTGMRLMEALRLRIQDIDFGKNEITVHCGKGAKD 180 Query: 198 RIV--------PLLPSVRKAILEYYDLC---------PFDLN-----------LNIQLPL 229 R PL + K L + C PF L P Sbjct: 181 RKTVLPVSLKFPLQKHMEKVRLIHEADCKEGFGSVPLPFALAKKYPNASKAWAWQWVFPQ 240 Query: 230 FRGIRGKP--------LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281 R R K ++P V QR + + G+P HT RHSFATHLL G D+R Sbjct: 241 ARRWRNKETGEQGRHHIDPSVIQRTLHEAVLRSGIPKPIGCHTFRHSFATHLLEAGYDIR 300 Query: 282 SIQSILGHFRLSTTQIYTNVNSKNG 306 +IQ +LGH + TT +YT+V ++ G Sbjct: 301 TIQELLGHSDVKTTMVYTHVLNRGG 325 >gi|327542930|gb|EGF29382.1| Integron integrase [Rhodopirellula baltica WH47] Length = 446 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 77/283 (27%), Positives = 123/283 (43%), Gaps = 49/283 (17%) Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 +++ +L E+R F++ + G + +L KS L +L K + E N + Sbjct: 158 RSLEELGEVEVRTFLNDLVANESGGVAAS-TLGQAKSALLFLFKETLGRELNFIEHSQAT 216 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 K LP L +D V H + + L+YG GLR E L ++ Sbjct: 217 KPKKLPVVLT-------IDEVKRVRKH----VTGTRRLMFDLMYGSGLRHKECRRLRIKD 265 Query: 181 IMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPF----DLNLN---IQLPLF-- 230 + D+ T+ ++ GKG+K R+ L VR+ ++E ++C DL + + LP Sbjct: 266 LQIDEGTILVRNGKGEKDRVTVLPGRVRQEVIEQIEVCRVRHLQDLEMGEGEVFLPDALK 325 Query: 231 -------RGIRGKPLNPGVFQRYIRQLRRYL--------------------GLPLSTTAH 263 R R + L P R + RY G+ + H Sbjct: 326 RKYPAESRKFRWQWLFPSPRTRMDPRSGRYWRHHVSEEFLSKSFAKALEASGVLKNAVPH 385 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 TLRHSFATHLL G D+R++Q ++GH +STT IY +V ++ G Sbjct: 386 TLRHSFATHLLEGGSDIRTVQELMGHADVSTTMIYLHVMNRPG 428 >gi|317055535|ref|YP_004104002.1| integrase family protein [Ruminococcus albus 7] gi|317057168|ref|YP_004105635.1| integrase family protein [Ruminococcus albus 7] gi|317133858|ref|YP_004089769.1| integrase family protein [Ruminococcus albus 7] gi|319788794|ref|YP_004090109.1| integrase family protein [Ruminococcus albus 7] gi|315447804|gb|ADU21368.1| integrase family protein [Ruminococcus albus 7] gi|315449437|gb|ADU23001.1| integrase family protein [Ruminococcus albus 7] gi|315450320|gb|ADU23883.1| integrase family protein [Ruminococcus albus 7] gi|315450661|gb|ADU24223.1| integrase family protein [Ruminococcus albus 7] Length = 334 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 90/290 (31%), Positives = 142/290 (48%), Gaps = 43/290 (14%) Query: 35 TLQSYECDTRQFLIFLAFYTE--EKITIQTIRQLSYTEIRAFIS-KRRTQKIGDRSLKRS 91 T+ SY DT F + L F +E + I+ +T+ ++ + F+S +K G + Sbjct: 27 TVSSYR-DT--FKLLLKFMSESGKSISKKTVDEIDCDVVLKFLSWLSNVRKNGVPTQNVR 83 Query: 92 LSGIKSFLKYLKKRKITTE-----SNILNMRNLKKSNSLPRALNE---KQALTLVDNVLL 143 L+ IKSF +Y+ I+ E S IL++ K+ LP ++ KQ L+ +D+ Sbjct: 84 LAHIKSFFRYV--MMISPEYSGQCSEILSIPFAKEDKRLPDCMSTDAIKQMLSSIDS--- 138 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-LRIQGKGDKIRIVPL 202 +S+E R+ AIL L+Y R+ E +SL ++ Q + + GKG+K R +PL Sbjct: 139 -SSNE----GLRHLAILSLMYDSACRVQEIISLDVKDFQPGQCCRIYVHGKGNKYRTIPL 193 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYLGLPLSTT 261 L K I +Y L + P+F G L G+ RYI +R+Y L T Sbjct: 194 LGKTEKIISKYIR----QFGLMQESPMFCNRNGDRLTRQGI--RYI--IRKYSKLANDTV 245 Query: 262 A---------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 H LRHS ATHL+ NG ++ +++ LGH ++TTQIY + N Sbjct: 246 PGIITGSVYPHRLRHSKATHLVDNGVNIYNVRDFLGHESVATTQIYLSTN 295 >gi|298388233|ref|ZP_06997754.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14] gi|298259008|gb|EFI01911.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14] Length = 170 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 51/150 (34%), Positives = 78/150 (52%), Gaps = 7/150 (4%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAIL 211 D R + +LY GLRISE L L P +I + +S +R+ QGKG K R L + K + Sbjct: 5 DLRFFCMFSILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRYTLLSRPLMKKLT 64 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 EY L ++ LF G+P + + ++ R G+ H LRHSFAT Sbjct: 65 EYNRL------YKPKVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFAT 118 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 HLL G D++ ++ ++GH + TT+ Y ++ Sbjct: 119 HLLEQGTDIKIVKELMGHNNIKTTERYVHI 148 >gi|32472343|ref|NP_865337.1| integrase/recombinase Y4QK [Rhodopirellula baltica SH 1] gi|32443579|emb|CAD73021.1| putative integrase/recombinase Y4QK [Rhodopirellula baltica SH 1] Length = 348 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 79/292 (27%), Positives = 125/292 (42%), Gaps = 30/292 (10%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 G +K T Y RQ F A + +++ Q +RQ F+ + + SL+ Sbjct: 67 GKAKRTHDGYIRAVRQLSDF-AGCSPDQVNEQHVRQF-------FLHLKNDRNFAYGSLR 118 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 + SGIK F + KR + I+ M L+ +LP L +Q L+ + Sbjct: 119 VAFSGIKFFFTHTCKR----DWEIIKMLKLQNITTLPEVLTIEQVHELIGSA-------- 166 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRK 208 R + +Y GLR++EAL L +I ++ + + GKG K R VPL + + Sbjct: 167 --TTQRMFVYFWTVYSLGLRLNEALHLQVSDIDAERGWVHVHRGKGAKDRYVPLPTTTVR 224 Query: 209 AILEYYD-------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 + Y+ L P D + P++ Q ++Q+ + L + Sbjct: 225 LLRNYWASHRHPSFLFPADGRKHDLAKDGVSEATTPMSETAVQGAMKQITKNLRFGKKVS 284 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 HTLRHS+ATHLL G L+ IQ LGH L TT +Y ++ + EI Sbjct: 285 IHTLRHSYATHLLEAGVGLKVIQKYLGHSSLQTTMVYLHLTDTAEANAREEI 336 >gi|326797736|ref|YP_004315555.1| integrase family protein [Sphingobacterium sp. 21] gi|326548500|gb|ADZ76885.1| integrase family protein [Sphingobacterium sp. 21] Length = 360 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 84/286 (29%), Positives = 132/286 (46%), Gaps = 34/286 (11%) Query: 26 EIERGLSKLTLQSYECDT-RQFLIFLA--FYTEEKITIQTIRQLSYTEIRAFI-SKRRTQ 81 E++R L +++Y T R +++ A Y + + I + L Y +RA+I T Sbjct: 87 ELQRMKEVLQMKAYSPSTIRTYMVEFAQLLYILKDVPIDS---LGYDRLRAYILYCINTL 143 Query: 82 KIGDRSLKRSLSGIK-SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 KI + L L+ IK F + L K E + KK ++LP+ L++K+ + D Sbjct: 144 KISESQLHSRLNAIKFYFEQVLHKPDFFAE-----IPRPKKPSTLPKVLSQKEVKRIFDA 198 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKI 197 V + ++ +L L YG GLR+SE ++L +I D L++ GKG K Sbjct: 199 VR----------NRKHLLMLQLCYGMGLRVSEVVNLKVSDI--DSGRLQVLIEAGKGKKD 246 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 R VPL +V + EYY + + LF G G + Q + + + Sbjct: 247 RYVPLPSAVLDLLREYYK------AYHPKTYLFEGQYGGRYSVRSVQAVFKNAMKAAKVN 300 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 H LRHS+ATHLL G D+ IQ +LGH + TT +Y V + Sbjct: 301 KPIGIHGLRHSYATHLLEYGTDMLFIQQLLGHNDIKTTMLYAKVGN 346 >gi|32472034|ref|NP_865028.1| integrase [Rhodopirellula baltica SH 1] gi|32397406|emb|CAD72712.1| integrase [Rhodopirellula baltica SH 1] Length = 348 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 79/292 (27%), Positives = 125/292 (42%), Gaps = 30/292 (10%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 G +K T Y RQ F A + +++ Q +RQ F+ + + SL+ Sbjct: 67 GKAKRTHDGYIRAVRQLSDF-AGCSPDQVNEQHVRQF-------FLHLKNDRNFAYGSLR 118 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 + SGIK F + KR + I+ M L+ +LP L +Q L+ + Sbjct: 119 VAFSGIKFFFTHTCKR----DWEIIKMLKLQNITTLPEVLTIEQVHELIGSA-------- 166 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRK 208 R + +Y GLR++EAL L +I ++ + + GKG K R VPL + + Sbjct: 167 --TTQRMFVYFWTVYSLGLRLNEALHLQVSDIDAERGWVHVHRGKGAKDRYVPLPTTTVR 224 Query: 209 AILEYYD-------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 + Y+ L P D + P++ Q ++Q+ + L + Sbjct: 225 LLRNYWASHRHPSFLFPADGRKHDLAKDGVSEATTPMSETAVQGAMKQITKNLRFGKKVS 284 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 HTLRHS+ATHLL G L+ IQ LGH L TT +Y ++ + EI Sbjct: 285 IHTLRHSYATHLLEAGVGLKVIQKYLGHSSLQTTMVYLHLTDTAEANAREEI 336 >gi|149198438|ref|ZP_01875483.1| integron integrase [Lentisphaera araneosa HTCC2155] gi|149138444|gb|EDM26852.1| integron integrase [Lentisphaera araneosa HTCC2155] Length = 424 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 100/225 (44%), Gaps = 50/225 (22%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 KKS LP L+ ++ +L+D L + ++ L+YG GLR +E L L + Sbjct: 200 KKSERLPVVLDVEEVRSLIDVTL-----------GQEKLMMKLIYGGGLRKNECLRLRIK 248 Query: 180 NIMDDQSTLRIQ-GKGDKIRIVPLLPSVR----------------------------KAI 210 ++ + L I+ GKGDK R L P + A+ Sbjct: 249 DLDFKRGALNIRAGKGDKDRQTLLSPKLEGEVNAHICEIKKLYDKDRTEGVEGVYLPNAL 308 Query: 211 LEYYDLCPFDLNLNIQLPL----------FRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 + Y D N P + IR L+ R +++ + +G+ Sbjct: 309 VRKYPSASKDWNWFWLFPSPALSIDPMCKVKTIRRHHLSGTGLSRVLKEKCKEVGIKKRC 368 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 T HTLRHSFATHLL G DLR+IQ +LGH +STTQIYT+V S N Sbjct: 369 TVHTLRHSFATHLLERGTDLRTIQELLGHEDISTTQIYTHVLSLN 413 >gi|328474785|gb|EGF45590.1| site-specific recombinase IntIA [Vibrio parahaemolyticus 10329] Length = 320 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 86/322 (26%), Positives = 133/322 (41%), Gaps = 65/322 (20%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISKRRTQKIGD 85 + R + T++SY ++F++F K++ IR LS+ I +K+ Sbjct: 14 LTRHYANKTIESYLFWIKRFIVFHQLAHPSKLSEDDVIRFLSHLAI--------DEKVAV 65 Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNVLL 143 ++ +L+ I + K ++ L+MR K LP L + V + Sbjct: 66 KTQALALNAISFLYRDFFKTPLS-----LDMRFQKSLTEKKLPVVLTRDEVRRFVQH--- 117 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL 202 ID R + LLYG GLRI E L L Q+I +R+ QGKG K R V L Sbjct: 118 --------IDPRYKLHIQLLYGSGLRIMECLRLRIQDIDYYYGAVRVWQGKGGKNRTVTL 169 Query: 203 ------------------------LPS-----VRKAILEYYDLCPFDLNLNIQLPLFR-- 231 +P + + + Y D N + P + Sbjct: 170 AKELHEPLKSQMNLARNYYFKDRHVPGYAGVYISEGLRRKYPNAELDFNWHFLFPSNKLS 229 Query: 232 ------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285 +R +N QR +++ + + T HTLRHSFATHLL +G D+R++Q Sbjct: 230 VDKETGQLRRHHINESAIQRAVKRSALDASIEKTVTCHTLRHSFATHLLESGADIRTVQE 289 Query: 286 ILGHFRLSTTQIYTNVNSKNGG 307 LGH + TTQIYT+V + G Sbjct: 290 QLGHTDVKTTQIYTHVIERGAG 311 >gi|148265141|ref|YP_001231847.1| phage integrase family protein [Geobacter uraniireducens Rf4] gi|146398641|gb|ABQ27274.1| phage integrase family protein [Geobacter uraniireducens Rf4] Length = 290 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 79/300 (26%), Positives = 127/300 (42%), Gaps = 37/300 (12%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +W + L+ L S +C TR + + FY + I Y F+ +R Sbjct: 4 DWYERSMKALQLAGLAEGSQQCYTRAVRMLVLFYDKTPDLISEEELQEY-----FLHRRN 58 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 K +L+ I+ F + + +R + +I ++S LP L++++ ++ Sbjct: 59 VDKWSSGTLRICYCAIRFFFEKVLRR----DWHIFGYLKAERSKKLPAVLSQEEIARILS 114 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR 198 V T H N A L+ +Y CGLR+ E L L +I D+ + + GKG K R Sbjct: 115 CV--RTPH--------NRAYLFTVYSCGLRLQEGLHLEVGDIDSDRMLIHVHRGKGAKDR 164 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI---------RGKPLNPGVFQRYIRQ 249 +VPL P + E++ + P+F + PL ++ Sbjct: 165 MVPLPPPTLAVLREHWK------SHKNPRPIFPALGCGDKQGATAESPLAITTVVGAMKD 218 Query: 250 LRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 R G+ S HTLRH +ATHLL G +LR IQ LGH + TT +Y ++ K D Sbjct: 219 AVRQAGITKRSVHIHTLRH-YATHLLEEGVNLRVIQRYLGHSSIETTMVYLHLTRKGHDD 277 >gi|50122313|ref|YP_051480.1| site-specific tyrosine recombinase XerC [Pectobacterium atrosepticum SCRI1043] gi|49612839|emb|CAG76289.1| probable integrase/recombinase protein [Pectobacterium atrosepticum SCRI1043] Length = 340 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 112/234 (47%), Gaps = 15/234 (6%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNEKQALTLVDNVLLHTSHETK 150 L+ I+ ++L +R + M K LP + L+E++ ++D + +T+ Sbjct: 99 LTSIRMLFRWLLQRHHILYNPAEQMTLPKAEKRLPAQILSEEETEAVMD------AQDTE 152 Query: 151 WIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRK 208 + RN A+L +L+ GLR SE L ++ + L + QGKG+K R+VP+ Sbjct: 153 TLTGLRNRAVLEMLWSTGLRRSELAGLMLDDVDVGRGVLVVRQGKGNKDRVVPVGLRALV 212 Query: 209 AILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQLRRYLGLPLSTTAHTLR 266 + Y D P + LF I GK L +R L + H R Sbjct: 213 WVQRYLDAVRPRLTTKHDSGALFVTIWGKTLGRATLTILAGSAIREQAHLKKAGACHVFR 272 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 HS AT +L NG D R IQ+ILGH +L TTQIYT V + + +++++THP+ Sbjct: 273 HSMATQMLENGADTRYIQAILGHEKLETTQIYTRVAIGH----LKQVHEKTHPA 322 >gi|150388279|ref|YP_001318328.1| phage integrase domain/SAM domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|150389751|ref|YP_001319800.1| phage integrase domain/SAM domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|150392024|ref|YP_001322073.1| phage integrase domain/SAM domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149948141|gb|ABR46669.1| phage integrase domain protein SAM domain protein [Alkaliphilus metalliredigens QYMF] gi|149949613|gb|ABR48141.1| phage integrase domain protein SAM domain protein [Alkaliphilus metalliredigens QYMF] gi|149951886|gb|ABR50414.1| phage integrase domain protein SAM domain protein [Alkaliphilus metalliredigens QYMF] Length = 332 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 67/278 (24%), Positives = 129/278 (46%), Gaps = 26/278 (9%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 GL+ TL+ Y + +F A+Y + + ++ +IR +++ + + ++ Sbjct: 68 GLAMRTLEGYSRNLNRF----AYYMR-----KNVEDVTTMDIRMYLASYAKTGVKNGTIG 118 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 ++ F ++L+ + +S + +++LK + +AL ++ L D + Sbjct: 119 TETDILRGFFRWLEDEEYINKSPLRKIKSLKPEKRIRKALTNEEMEILRDGCKTY----- 173 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 R A+L Y G R+ E ++ +I + L++ GKG+K R V + + Sbjct: 174 -----RQKALLEFFYSTGCRLEEVENVKKYDIDWQRLQLKVIGKGNKERTVYINAKAKVH 228 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 I +Y L+ + LF R K L +R ++ + G+ S H +RH Sbjct: 229 IQKY-----LMARLDEEEALFVTERNPVKKLGRRSIEREFDKIEKTSGIKKSIYPHLIRH 283 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + ATHLL++G DL ++Q+ILGH S TQIY +++ N Sbjct: 284 TMATHLLNSGADLGTVQAILGHEDASITQIYAQISNTN 321 >gi|148994208|ref|ZP_01823501.1| tyrosine recombinase [Streptococcus pneumoniae SP9-BS68] gi|168488872|ref|ZP_02713071.1| tyrosine recombinase XerD [Streptococcus pneumoniae SP195] gi|147927349|gb|EDK78380.1| tyrosine recombinase [Streptococcus pneumoniae SP9-BS68] gi|183572517|gb|EDT93045.1| tyrosine recombinase XerD [Streptococcus pneumoniae SP195] gi|332073382|gb|EGI83861.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus pneumoniae GA17570] Length = 298 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 86/291 (29%), Positives = 132/291 (45%), Gaps = 32/291 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L + + LS T+++Y+ D QF Y + Y + ++I Sbjct: 9 YLDYCKTHKRLSSHTIRAYKNDLMQF------YNSD-----------YDHVESYIEHLTQ 51 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALN----EKQAL 135 I +L+R ++ +K F YLK + I E+ +R + LP+ + + + Sbjct: 52 SNIKTNTLRRKIACMKVFYNYLKYQNIIEENPFNQLRFQFRTEKILPKTIPYDILKNIFI 111 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L V++ + K RN I+ LL G+RISE + ++I TL I GKG Sbjct: 112 YLEQKVVISKTDYQKQKAERNLLIISLLLSTGIRISELCHIHLKDINLSNKTLHIIGKGK 171 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIR-GKPLNPGVFQRYIRQLR 251 K RI+ L ILE Y +N + LF G KPL+ + ++++ Sbjct: 172 KERILFLGDQTTFNILETY------INKTGKESNDFLFPGKHLPKPLSEQSVRLILKRIV 225 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 L + T H RHSFAT LL N D+R IQ ILGH +S TQIYT+V+ Sbjct: 226 EQNSLSKTITPHMFRHSFATMLLDNDVDIRYIQQILGHSSISVTQIYTHVS 276 >gi|310764975|gb|ADP09925.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 359 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 93/324 (28%), Positives = 146/324 (45%), Gaps = 35/324 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI--- 75 ++WL +L G S T+Q Y R FL + E I+ Q+S + ++ Sbjct: 26 ESWLSHLAAA-GRSPRTVQGYGERVRAFLAWC-----EPRGIRYAPQVSLVVLESYQRWL 79 Query: 76 -SKRRTQKI-----GDRSLKRSLSGIKSFLKYLKKRK--ITTESNILNMRNLKKSNSLP- 126 S RR G R L LS ++ L++L KR + +++L + K+ LP Sbjct: 80 QSYRRADGRHLVVNGQRHL---LSALRGLLRWLLKRHHILYNPADLLEL--PKEERRLPA 134 Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 + +E + ++ ++ T RN AIL LL+ G+R SE L ++ + Sbjct: 135 QVFSESETRRVLQSLDAGTP-----PGLRNRAILELLWSSGIRRSELAGLLLSDVDFTRG 189 Query: 187 TLRIQ-GKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 + ++ GKG K R+VP+ + + Y D+ P LF +G L G Sbjct: 190 VVNVRRGKGGKDRVVPVGYAALMWLGRYLQDVRPRLAQRFDSGHLFISHKGTGLAHGTLT 249 Query: 245 RYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 R +R L + H RHS AT +L NG D R IQ+ILGH +L TTQIYT V Sbjct: 250 AMAGRAIRDGAHLKKAGACHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAI 309 Query: 304 KNGGDWMMEIYDQTHPSITQKDKK 327 + + ++ QTHP+ ++ K Sbjct: 310 GH----LQSVHAQTHPAEKRRTAK 329 >gi|224372317|ref|YP_002606689.1| phage integrase [Nautilia profundicola AmH] gi|223589124|gb|ACM92860.1| phage integrase [Nautilia profundicola AmH] Length = 269 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 119/241 (49%), Gaps = 34/241 (14%) Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESN---ILNMRNLKKSNSLPRALNEKQALTLV 138 ++ +++ + +S ++SF ++L+ TE + I+ ++K +LP+ ++ Sbjct: 57 ELNKKTIAKKVSALRSFFEFLE-----TEGHKFKIIGDEHIKVPKTLPKPVS-------- 103 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + H K + ++ GLRISEA +T +I D + I+GKG K R Sbjct: 104 ---MEHIKKALKSATMDEYLAIITIFSLGLRISEAAGITLSDIKGDW--IEIRGKGAKTR 158 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 ++P+ P ++ I +Y ++ P + LF G PL RY+ Q R + + Sbjct: 159 LLPVHPKLKDFINKYLEIHP------KKEYLFEK-EGVPLGADKI-RYLIQ-RAFKKHGI 209 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 T H LRHSFAT++L NG + + +LGH +STTQIYT +++ ++ Y + H Sbjct: 210 HVTPHQLRHSFATYMLQNGARINDVSELLGHEFISTTQIYTKLSN----SLKLQNYLKAH 265 Query: 319 P 319 P Sbjct: 266 P 266 >gi|215447156|ref|ZP_03433908.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis T85] gi|289759014|ref|ZP_06518392.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T85] gi|289714578|gb|EFD78590.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T85] Length = 299 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 81/317 (25%), Positives = 132/317 (41%), Gaps = 53/317 (16%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L ++ G S T ++Y D R FLA ++ L+ + +R++++ Sbjct: 12 LALQCGRSVHTRRAYLGDLRSLFAFLADRGS------SLDALTLSVLRSWLAATAGAGAA 65 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 +L R S +K+F + +R + ++ K +LP L + QAL + Sbjct: 66 RTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAM-AAAES 124 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--------------MDDQSTLRI 190 + + + R+ I+ LLY G+R+SE L +I + ST Sbjct: 125 GAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIEHRPSVGSGARQGQQEAHST--C 182 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 G +R P L R+A++ L G RG+ L+ +RQ Sbjct: 183 SGSQPPMRCTPGLVDGRRALV----------TAESGHALLLGARGRRLD-------VRQA 225 Query: 251 RRYL--------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 R + G P H LRHS ATHLL G DLR +Q +LGH L+TTQ+YT+V Sbjct: 226 RTAVHQTVAAVDGAP-DMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVA 284 Query: 303 SKNGGDWMMEIYDQTHP 319 + ++++ HP Sbjct: 285 VAR----LRAVHERAHP 297 >gi|153001869|ref|YP_001367550.1| integron integrase [Shewanella baltica OS185] gi|151366487|gb|ABS09487.1| integron integrase [Shewanella baltica OS185] Length = 319 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 88/309 (28%), Positives = 134/309 (43%), Gaps = 58/309 (18%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 RG S T +SY + F+ F E + + + Q F++ +R I + + Sbjct: 18 RGYSIRTEKSYLYWIKAFINFHHKRHPETMGTEEVAQF-----LTFLANQRNVAINTQKI 72 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 + L YL ++ + E L K LP L+ + ++L+ N L Sbjct: 73 ALNA------LAYLYQKHLHHELGNLGFCYATKQRYLPTVLSPSE-ISLILNEL------ 119 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR--------- 198 D R+ I+ LLYG GLR+SE L L Q+I +Q++L ++ GKG K R Sbjct: 120 ----DGRDRLIIELLYGSGLRVSECLRLRVQDIDIEQASLTVRDGKGHKDRQIILSHKCA 175 Query: 199 ---------------------IVPLLPSV--RK---AILEYYDLCPFDLNLNIQLPLFRG 232 I P LP+ RK A ++ + F P Sbjct: 176 IKLTAYINKAMEIQHSDNQQGIGPSLPNALERKYPNAFKQHGWMFIFPSTTTCINPYTGT 235 Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 + L+ V ++ + R + + T HT RHSFATHLL +G D+RS+Q +LGH + Sbjct: 236 LCRHHLHQSVIRKALGNAVRNIKITKRVTCHTFRHSFATHLLQSGSDIRSVQELLGHNDV 295 Query: 293 STTQIYTNV 301 STTQIYT+V Sbjct: 296 STTQIYTHV 304 >gi|163855344|ref|YP_001629642.1| tyrosine recombinase xerD [Bordetella petrii DSM 12804] gi|163855612|ref|YP_001629910.1| putative integrase/recombinase [Bordetella petrii DSM 12804] gi|163259072|emb|CAP41371.1| Tyrosine recombinase xerD [Bordetella petrii] gi|163259340|emb|CAP41640.1| putative integrase/recombinase [Bordetella petrii] Length = 349 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 83/295 (28%), Positives = 137/295 (46%), Gaps = 24/295 (8%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI---SKRR 79 ++L RG+S T+ SY L F+ KI I L + +I+AF+ + R Sbjct: 20 EHLAAHRGMSANTVASYRDTFSILLRFMEHQAGVKIERICIADLHHKQIQAFLLWLEQDR 79 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKK---RKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + R+ + LS I SF +++ I ILN++ K+ +S L+ + Sbjct: 80 GNSVNTRN--QRLSAITSFFRFVMSIYPEHILLCQQILNIQFKKRQSSTVDYLSIEAV-- 135 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGD 195 +LL + K + R+ +L +LY G R+ E ++ ++ + +T R+ GKG Sbjct: 136 ---ELLLQQPNARKPMGRRDLVLLSVLYDTGARVQELANMNVSDLKLTAPATARLLGKGA 192 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF-RGIRGKPLNPGV---FQRYIRQLR 251 K+R+VPLL ++ Y PLF +R + G+ Q+Y R++ Sbjct: 193 KVRLVPLLAPTTALLVSYLQEHHGQYLEQKDRPLFCNNVRKRLTRAGISYILQKYAREVS 252 Query: 252 R----YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + LG +S HTLRHS A HLL G +L I+ +LGH + TT+IY + Sbjct: 253 QGNPGLLGTKIS--PHTLRHSKAMHLLQAGVNLIYIRDLLGHSDIKTTEIYARAD 305 >gi|300872275|gb|ADK38965.1| IntI4 [Vibrio sp. V37(2010)] Length = 293 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 88/188 (46%), Gaps = 38/188 (20%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSV 206 +D ++ + LLYG GLR+ E + L Q+I D +RI QGKG K R V L P + Sbjct: 95 VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 154 Query: 207 RKAIL---EYYDL----------------------CPFDLNLNIQLPLFR--------GI 233 ++ I YYD P++ + P F+ + Sbjct: 155 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 214 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R +N V Q+ +R+ + G+ + T HTLRHSFATH L G D+R+ +LGH + Sbjct: 215 RRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHSLEVGADIRTGHELLGHTDVK 274 Query: 294 TTQIYTNV 301 T Q YT+V Sbjct: 275 TEQNYTHV 282 >gi|270292983|ref|ZP_06199194.1| putative integrase/recombinase XerD [Streptococcus sp. M143] gi|270278962|gb|EFA24808.1| putative integrase/recombinase XerD [Streptococcus sp. M143] Length = 298 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 87/294 (29%), Positives = 131/294 (44%), Gaps = 38/294 (12%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L + + LS T+++Y+ D QF Y + Y + ++I Sbjct: 9 YLDYCKTHKRLSSHTIRAYKNDLMQF------YNSD-----------YDNVESYIEHLTQ 51 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALN----EKQAL 135 I +L+R ++ +K F YLK + I E+ +R + LP+ + + L Sbjct: 52 SNIKTNTLRRKIACMKVFYNYLKYQNIIEENPFNQLRFQFRTEKILPKTIPYDVLKSIFL 111 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L V+L + K RN I+ LL G+RISE + ++I TL I GKG Sbjct: 112 YLEQRVVLSKTDYQKQHAERNLLIISLLLSTGIRISELCHIHLKDINLSNKTLHIIGKGK 171 Query: 196 KIRIVPLLPSVRKAILEYY------DLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIR 248 K RI+ L +LE Y + F LF G KPL+ + ++ Sbjct: 172 KERILFLGDQKTFNLLETYINKTRNEFNDF---------LFPGKHSLKPLSEQSVRLILK 222 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 ++ L + T H RHSFAT LL N D+R IQ ILGH +S TQIYT+V+ Sbjct: 223 RIVEQNSLFRTITPHMFRHSFATMLLDNDVDIRYIQQILGHSSISVTQIYTHVS 276 >gi|163855809|ref|YP_001630107.1| putative integrase/recombinase [Bordetella petrii DSM 12804] gi|163259537|emb|CAP41838.1| putative integrase/recombinase [Bordetella petrii] Length = 336 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 85/303 (28%), Positives = 137/303 (45%), Gaps = 38/303 (12%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK--- 77 +L+ L +GL T++SY R FLIF+A ++ L Y ++ F++ Sbjct: 14 FLEYLPRHKGLQSSTIRSYRDSLRLFLIFVADANRIGVSELAFEHLGYAAVQDFLNNMEV 73 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKR--KITTESNILNMRNLKKSNSLPR----ALNE 131 +R I R+ + L+ + F +YL + ++ S + +K+ LP A +E Sbjct: 74 KRGNAISTRNQR--LTALHMFYEYLGRTTPEMLPASAKVAAIPMKRC-PLPEMKFLARDE 130 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 +A+ L +H+ + R+ A+L LLY G R+SE L +D QS R++ Sbjct: 131 VEAM-----FALIPAHDR--LSQRDRALLMLLYNTGARVSEVAQLKVGQ-LDLQSPARVR 182 Query: 192 --GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIR 248 GKG K R PL KA+ D P L + P+F G+ + + G+++R Sbjct: 183 LLGKGSKWRTCPLWSQTAKALQSMLDERPERLPPDA--PVFVGVAQEGMTRFGIYKR--- 237 Query: 249 QLRRYLGL---------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 +R Y L P T H RH+ A HLL +G ++ I+ LGH L TT Y Sbjct: 238 -IRHYAKLWEASVTASSPTHVTPHVFRHTTAVHLLESGVEVNVIRGWLGHVNLETTNRYA 296 Query: 300 NVN 302 + Sbjct: 297 EIT 299 >gi|50122323|ref|YP_051490.1| site-specific tyrosine recombinase XerC [Pectobacterium atrosepticum SCRI1043] gi|49612849|emb|CAG76299.1| probable integrase/recombinase [Pectobacterium atrosepticum SCRI1043] Length = 352 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/169 (35%), Positives = 85/169 (50%), Gaps = 7/169 (4%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213 RN A+L +L+ GLR SE L ++ + L + QGKG+K R+VP+ + Y Sbjct: 158 RNRAVLEMLWSTGLRRSELAGLMLDDVDVGRGVLVVRQGKGNKDRVVPVGLRALVWVQRY 217 Query: 214 YDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQLRRYLGLPLSTTAHTLRHSFAT 271 D P + LF I GK L R +R L + H RHS AT Sbjct: 218 LDAVRPRLTTRHDSGYLFVTIWGKRLGRATLTILAGRAIRNDAHLKKAGACHVFRHSMAT 277 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 +L NG D R IQ+ILGH +L TTQIYT V + + +++++THP+ Sbjct: 278 QMLENGADTRHIQAILGHEKLETTQIYTRVAIGH----LKQVHEKTHPA 322 >gi|225849231|ref|YP_002729395.1| recombinase [Sulfurihydrogenibium azorense Az-Fu1] gi|225644770|gb|ACN99820.1| recombinase [Sulfurihydrogenibium azorense Az-Fu1] Length = 297 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 76/290 (26%), Positives = 132/290 (45%), Gaps = 48/290 (16%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T+++Y D QF+ + + + +S ++I F ++QK ++ R L+ Sbjct: 21 TIKNYSVDLNQFIKIVGD--------KEVELVSKSDIAKFRMVLQSQKKKSSTIARKLAT 72 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + S +YL ++ S I K S +P +L+ ++ TL+ N+ + Sbjct: 73 LNSLYQYLIDLELVKVSPITKSHRPKISQRIPSSLSNEEIKTLLKNI----------DNL 122 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM--------------------DDQSTLRIQGKG 194 ++ AI+ LL GLR SE L++ NI+ DD + +R+ GKG Sbjct: 123 QDKAIVVLLLTTGLRSSELLNIKKSNILIERQNQTFSVDKVIEEGLKEDDIAYIRVVGKG 182 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 DK R VP+ + ++EY L + ++ + P+F P++ R I+ + + + Sbjct: 183 DKEREVPITGKPLQILVEY--LKEVNHYIDSKTPIF------PISYHTLWRKIKDIGKKI 234 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 L H LRH+ AT L++G +LR IQ +LGH TT Y V K Sbjct: 235 ATSLH--PHKLRHTAATVALASGAELRVIQELLGHASPITTARYAKVGQK 282 >gi|298388238|ref|ZP_06997757.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14] gi|298259004|gb|EFI01909.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14] Length = 160 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 49/141 (34%), Positives = 75/141 (53%), Gaps = 7/141 (4%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220 +LY GLRISE L L P +I + +S +R+ QGKG K R L + K + EY L Sbjct: 4 ILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRYTLLSKPLMKKLTEYNRLY--- 60 Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280 ++ LF G+P + + ++ R G+ H LRHSFATHLL G D+ Sbjct: 61 ---KPKVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFATHLLEQGTDI 117 Query: 281 RSIQSILGHFRLSTTQIYTNV 301 + ++ ++GH + TT+ Y ++ Sbjct: 118 KIVKELMGHNNIKTTERYVHI 138 >gi|182413037|ref|YP_001818103.1| integrase family protein [Opitutus terrae PB90-1] gi|182414797|ref|YP_001819863.1| integrase family protein [Opitutus terrae PB90-1] gi|182416164|ref|YP_001821230.1| integrase family protein [Opitutus terrae PB90-1] gi|182416190|ref|YP_001821256.1| integrase family protein [Opitutus terrae PB90-1] gi|177840251|gb|ACB74503.1| integrase family protein [Opitutus terrae PB90-1] gi|177842011|gb|ACB76263.1| integrase family protein [Opitutus terrae PB90-1] gi|177843378|gb|ACB77630.1| integrase family protein [Opitutus terrae PB90-1] gi|177843404|gb|ACB77656.1| integrase family protein [Opitutus terrae PB90-1] Length = 336 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 90/317 (28%), Positives = 141/317 (44%), Gaps = 33/317 (10%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 M +LP ++ R + Q+L +RGLS T+ SY + L F + + +++T Sbjct: 1 MSAPDLPSLI-------RGFFDQHLVSQRGLSGHTVLSYRDTFKLLLKFASDDSGKRVTE 53 Query: 61 QTIRQLSYTEIRAFI---SKRRTQKIGDRSLKRSLSGIKSFLKYLK---KRKITTESNIL 114 T+ L+ + F+ R I R+L+ L+ I SF +YL R +T I+ Sbjct: 54 LTLADLTAELVHGFLRHLEADRRNGIVTRNLR--LAAIHSFFRYLAIVDPRHLTHAHTII 111 Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174 + ++ + + + L + + V + T + R+ A+L +LY G+R E + Sbjct: 112 AVPFKRRPHRVAQFLEKDE----VQEIFRQIDSRTLF-GQRDDALLRMLYNTGMRAQELV 166 Query: 175 SLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233 L +++ S + I GKG K R PL P A+ Y L P + +PLF I Sbjct: 167 DLDVRHVRFTRPSNVLIFGKGRKERTCPLWPETVAALKSY--LQPRSIKFTDAVPLFLNI 224 Query: 234 RGKPLNP-GVFQRYIRQLRRYLG-------LPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285 G L GV RYI R L T HT RH+ A HLL + DL I+S Sbjct: 225 DGNRLTRFGV--RYIVSHRISEAAQRCPTLLARRITPHTWRHTTAMHLLQSNVDLAMIRS 282 Query: 286 ILGHFRLSTTQIYTNVN 302 LGH + TT Y ++ Sbjct: 283 WLGHASIETTNTYVEID 299 >gi|312131663|ref|YP_003999003.1| integrase family protein [Leadbetterella byssophila DSM 17132] gi|311908209|gb|ADQ18650.1| integrase family protein [Leadbetterella byssophila DSM 17132] Length = 275 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 72/271 (26%), Positives = 132/271 (48%), Gaps = 23/271 (8%) Query: 33 KLTLQSYECDT-RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 +L Q Y +T R +L + Y + ++++ + +EI +F+ K+++ +I K Sbjct: 13 QLIEQRYAPNTIRAYLDYSKLYLQHVQPYESLQDVPLSEIESFV-KQKSDQISISYQKGL 71 Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 + IK + K+K+ E L + +K SLP+ ++++ + D Sbjct: 72 VGAIKKIHDLVGKQKL--ELKFLYPK--RKFESLPKYFSKEEIKRIFDAT---------- 117 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAI 210 + ++ AIL ++Y CGLR+S+ ++L +I L I+ K K R V L + K + Sbjct: 118 PNVKHKAILMIIYSCGLRVSDLINLKMSDIKTHDKLLSIRSTKNSKDRWVTLPDPLIKIL 177 Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 YY+ + LF G + Q +++ + G+ + T H+LRHSFA Sbjct: 178 RSYYN------EYQPKNYLFENPDGGQYSERSVQLILKRALKNGGIKTAGTVHSLRHSFA 231 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 HLL +G DL ++QS++GH + TT+IY + Sbjct: 232 IHLLQSGTDLHTVQSLMGHQSIKTTEIYAQM 262 >gi|153000208|ref|YP_001365889.1| integron integrase [Shewanella baltica OS185] gi|151364826|gb|ABS07826.1| integron integrase [Shewanella baltica OS185] Length = 319 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 88/309 (28%), Positives = 134/309 (43%), Gaps = 58/309 (18%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 RG S T +SY + F+ F E + + + Q F++ +R I + + Sbjct: 18 RGYSIRTEKSYLYWIKAFINFHHKRHPETMGTEEVAQF-----LTFLANQRNVAINTQKI 72 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 + L YL ++ + E L K LP L+ + ++L+ N L Sbjct: 73 ALNA------LAYLYQKHLHHELGNLGFCYATKQRYLPTVLSPSE-ISLILNEL------ 119 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR--------- 198 D R+ I+ LLYG GLR+SE L L Q+I +Q++L ++ GKG K R Sbjct: 120 ----DGRDRLIIELLYGSGLRVSECLRLRIQDIDIEQASLTVRDGKGHKDRQTILSHKCA 175 Query: 199 ---------------------IVPLLPSV--RK---AILEYYDLCPFDLNLNIQLPLFRG 232 I P LP+ RK A ++ + F P Sbjct: 176 IKLTAYINKAMEIQHRDNQQGIGPSLPNALERKYPNAFKQHGWMFIFPSTTTCINPYTGK 235 Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 + L+ V ++ + R + + T HT RHSFATHLL +G D+RS+Q +LGH + Sbjct: 236 LCRHHLHQSVIRKALGNAVRNIKITKRVTCHTFRHSFATHLLQSGSDIRSVQELLGHNDV 295 Query: 293 STTQIYTNV 301 STTQIYT+V Sbjct: 296 STTQIYTHV 304 >gi|320321214|gb|EFW77351.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. glycinea str. B076] Length = 320 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 76/289 (26%), Positives = 130/289 (44%), Gaps = 28/289 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W NL+ R T ++Y+ D F F+ + + RQ++ + + A+ + Sbjct: 32 WFANLDNPR-----TRRAYQNDLTDFSSFIGLASADDF-----RQVTRSHVLAWRADLEQ 81 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVD 139 + + +++R L+ + S +L ++N + N PR NE + L D Sbjct: 82 RGLAGATIRRKLAALASLFDHL------LDNNAVAGGNPVHGVKRPRIESNEGKTPALGD 135 Query: 140 N---VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194 + LL E+ R+ A+L +L GLR EA L +I + + L+I GKG Sbjct: 136 HQAKALLEAPDESTLKGRRDRAMLAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKG 195 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR----YIRQL 250 K+R +PL P I Y + L+ + ++PLF +RGK GV + Sbjct: 196 GKVRYLPLHPVAAGRIHLYLERSGHHLD-DKKVPLFISLRGKSTGAGVSANGIYTVVEAY 254 Query: 251 RRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + G+ + H LR + AT+ L + D+ +Q+ LGH +STT+IY Sbjct: 255 AKKAGIEVDGLGVHGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303 >gi|120556113|ref|YP_960464.1| integron integrase [Marinobacter aquaeolei VT8] gi|120325962|gb|ABM20277.1| integron integrase [Marinobacter aquaeolei VT8] Length = 322 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 74/249 (29%), Positives = 114/249 (45%), Gaps = 52/249 (20%) Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 ++L I K++ KR+I L + K +P L+ + +++ N Sbjct: 71 QALCAIIFVYKHVLKREIEN----LQYKMTKTPRRMPTVLSPDEVASILQN--------- 117 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVR- 207 +DA I LLYGCGLRI+EALSL ++I + +S L GKG K R + ++R Sbjct: 118 --MDAEYWLITALLYGCGLRINEALSLRVKDIDLKSRSLLVFNGKGRKDRYTLIPGNLRE 175 Query: 208 ---------KAILEY-----YDLCPFDLNLNIQL-PLFRGIRGKPLNPGV---------- 242 +A+ E + L +L+ + P + + L P V Sbjct: 176 NMERQFAHVRAVHESDLADGFGLTSVPASLHKKYGPAMKDFGWQHLFPSVTRCVHPIAGY 235 Query: 243 ----------FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 + R +RQ G+ TAHT RH+FAT LL +G D+R++Q ILGH + Sbjct: 236 VCRHHLHHSSYSRRLRQAVLATGITKRVTAHTFRHAFATELLRSGSDIRTVQEILGHSDI 295 Query: 293 STTQIYTNV 301 TT+IYT+V Sbjct: 296 RTTEIYTHV 304 >gi|302527366|ref|ZP_07279708.1| tyrosine recombinase XerC [Streptomyces sp. AA4] gi|302436261|gb|EFL08077.1| tyrosine recombinase XerC [Streptomyces sp. AA4] Length = 335 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 76/160 (47%), Gaps = 9/160 (5%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212 R+ +L L GLR +E +LTP++++ D + L + GKG + R +P+ P++ K I + Sbjct: 141 RDVLVLALGLVAGLRAAEMRALTPRSVVGRDGELRLHVHGKGSRDRSIPVQPALAKLIED 200 Query: 213 YYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYIRQLRRYLGL----PLSTTAHTL 265 Y C PL R G P+ G + ++ R+ GL P H L Sbjct: 201 YQASCRRRFPRQRFPASEPLLRDRAGNPIGRGALEYLVKSCYRWAGLHDRVPTGANLHAL 260 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 RH+FAT L +G I S+LGH L T+Q Y + Sbjct: 261 RHTFATRLAEDGATASEIMSLLGHASLVTSQNYIEATGRE 300 >gi|328947550|ref|YP_004364887.1| integron integrase [Treponema succinifaciens DSM 2489] gi|328447874|gb|AEB13590.1| integron integrase [Treponema succinifaciens DSM 2489] Length = 410 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 71/255 (27%), Positives = 123/255 (48%), Gaps = 51/255 (20%) Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 ++L+ + + +++K + +N+++ KK +P + ++ ++ N Sbjct: 161 QALAALLFYYRFVKNEPMEKLTNVVHA---KKKTRIPVVFSRQEVSKIIGN--------- 208 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLP 204 + I LLYG GLR++EALSL ++ D++ + + GKGDK R ++P L+ Sbjct: 209 --LTGTKKLIAKLLYGTGLRLNEALSLRILDLDFDRNEIIVRHGKGDKDRHVMIPRTLIC 266 Query: 205 SVRKAILEYYDLCPFDLNL---NIQLP------------------LF----------RGI 233 ++ I + DL +++LP LF G Sbjct: 267 ELKSHIENLRKIHEEDLKAGFGSVKLPQALSDKYQGGSKEFKWQWLFPQKNRWKNPQTGE 326 Query: 234 RGK-PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 G+ L+ + QR ++Q G+ + + HT RHSFATHLL NG D+R+IQ +LGH + Sbjct: 327 EGRWHLDESLMQRAVKQAILEAGINKNASCHTFRHSFATHLLENGYDIRTIQELLGHSDV 386 Query: 293 STTQIYTNVNSKNGG 307 STT IYT+V ++ G Sbjct: 387 STTMIYTHVLNRGAG 401 >gi|32472856|ref|NP_865850.1| integrase [Rhodopirellula baltica SH 1] gi|32444093|emb|CAD73535.1| integrase [Rhodopirellula baltica SH 1] Length = 436 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 79/292 (27%), Positives = 125/292 (42%), Gaps = 30/292 (10%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 G +K T Y RQ F A + +++ Q +RQ F+ + + SL+ Sbjct: 155 GKAKRTHDGYIRAVRQLSDF-AGCSPDQVNEQHVRQF-------FLHLKNDRNFAYGSLR 206 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 + SGIK F + KR + I+ M L+ +LP L +Q L+ + Sbjct: 207 VAFSGIKFFFTHTCKR----DWEIIKMLKLQNITTLPEVLTIEQVHELIGSA-------- 254 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRK 208 R + +Y GLR++EAL L +I ++ + + GKG K R VPL + + Sbjct: 255 --TTQRMFVYFWTVYSLGLRLNEALHLQVSDIDAERGWVHVHRGKGAKDRYVPLPTTTVR 312 Query: 209 AILEYYD-------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 + Y+ L P D + P++ Q ++Q+ + L + Sbjct: 313 LLRNYWASHRHPSFLFPADGRKHDLAKDGVSEATTPMSETAVQGAMKQITKNLRFGKKVS 372 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 HTLRHS+ATHLL G L+ IQ LGH L TT +Y ++ + EI Sbjct: 373 IHTLRHSYATHLLEAGVGLKVIQKYLGHSSLQTTMVYLHLTDTAEANAREEI 424 >gi|332526187|ref|ZP_08402322.1| integrase/recombinase [Rubrivivax benzoatilyticus JA2] gi|332110027|gb|EGJ10655.1| integrase/recombinase [Rubrivivax benzoatilyticus JA2] Length = 297 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 62/178 (34%), Positives = 89/178 (50%), Gaps = 39/178 (21%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAIL-----EYYD 215 LLYG GLRI+EAL L +++ Q + ++ GKG K R+V +LP+ +A L + Sbjct: 102 LLYGTGLRITEALQLRVKDVDFAQRAILVRAGKGGKDRVV-MLPAALEAPLRDQLRAVHA 160 Query: 216 LCPFDL---NLNIQLP-------------------LFRG----------IRGKPLNPGVF 243 + D +QLP +G +R L PG F Sbjct: 161 VWAEDAAAGRAGVQLPDALERKYPRAGASWAWFWVFPQGRHSADPRSGVVRRHHLVPGSF 220 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 QR + + G+ T HTLRHSFATHLL +G D+R++Q +LGH ++TT IYT+V Sbjct: 221 QRAFARALQAAGVAKPATPHTLRHSFATHLLQSGSDIRTVQELLGHADVATTMIYTHV 278 >gi|320321405|gb|EFW77525.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. glycinea str. B076] gi|320331161|gb|EFW87128.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. glycinea str. race 4] gi|330882731|gb|EGH16880.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. glycinea str. race 4] Length = 320 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 76/290 (26%), Positives = 132/290 (45%), Gaps = 30/290 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W NL+ R T ++Y+ D F F+ + + RQ++ + + A+ + Sbjct: 32 WFANLDNTR-----TRRAYQNDLTDFSAFIGLASADDF-----RQVTRSHVLAWRANLEQ 81 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVD 139 + + +++R L+ + S +L ESN + N P+ NE + L D Sbjct: 82 RGLAGATIRRKLAALASLFDHL------LESNAIAGGNPVHGVKRPKIESNEGKTPALGD 135 Query: 140 N---VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194 + LL E+ R+ A+L +L GLR EA L +I + + L+I GKG Sbjct: 136 HQAKALLEAPDESTLKGLRDRAMLAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKG 195 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-----GVFQRYIRQ 249 K+R +PL P I Y + L+ + ++PLF +RGK G++ + Sbjct: 196 GKVRYLPLHPVAAGRIHWYLERSGHHLD-DKKVPLFISLRGKSTGASISANGIYT-VVEA 253 Query: 250 LRRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + G+ ++ H LR + AT+ L + D+ +Q+ LGH +STT+IY Sbjct: 254 YTKKAGIEVAGLGVHGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303 >gi|66047873|ref|YP_237714.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] gi|63258580|gb|AAY39676.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] Length = 317 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 74/288 (25%), Positives = 131/288 (45%), Gaps = 26/288 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W NL+ R T ++Y+ D F F+ + + RQ++ + + A+ + Sbjct: 29 WFANLDNPR-----TRRAYQNDLTDFSSFIVLASADDF-----RQVTRSHVLAWRADLEQ 78 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN---MRNLKKSNSLPRALNEKQALTL 137 + + +++R L+ + S +L + N ++ ++ + AL + QA L Sbjct: 79 RGLAGATIRRKLAALASLFDHLLENNAVVGGNPVHGVKRPRIESNEGKTPALGDHQAKAL 138 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGD 195 +D E+ R+ A+L +L GLR EA L +I + + L+I GKG Sbjct: 139 LD-----APDESTLKGLRDRAMLAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKGG 193 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL----R 251 K+R +PL P I Y + L ++ ++PLF +RGK GV I + Sbjct: 194 KVRYLPLHPVAAGRIHMYLERSGHHL-VDKKVPLFISLRGKSTGAGVSANGIYTVVGAYA 252 Query: 252 RYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + G+ + H LR + AT+ L + D+ +Q+ LGH +STT+IY Sbjct: 253 KKAGIKVDGLGVHGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 300 >gi|261746151|gb|ACX94072.1| putative integrase [Acinetobacter genomosp. 3] Length = 203 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 104/209 (49%), Gaps = 24/209 (11%) Query: 101 YLK-KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159 YLK K+ +E + + K LP L++++ + +V +VL + H T + Sbjct: 2 YLKTASKLNSELKEMKIERPKTPRKLPNVLSKEEIIKIV-SVLKNLKHRT---------V 51 Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEY---YD 215 + L+Y GLRISEA+ + ++I ++ + I+ KG K R L + K +LEY Y Sbjct: 52 ISLIYSAGLRISEAVKMEIRDIDFNRKIINIKDAKGKKDRQTALSLKIEKLLLEYMAFYK 111 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275 + +F G G+ + Q+ + G+ + H+LRHS+ATHL Sbjct: 112 PSKY---------IFEGAGGEKYSERSIQQVFTIAVKEAGIKKEVSVHSLRHSYATHLHE 162 Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 G D++ IQ +LGH TT+IYT+V+ K Sbjct: 163 AGTDIKIIQELLGHESTKTTEIYTHVSRK 191 >gi|323483868|ref|ZP_08089245.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14163] gi|323692871|ref|ZP_08107096.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14673] gi|323402822|gb|EGA95143.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14163] gi|323503046|gb|EGB18883.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14673] Length = 282 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 78/291 (26%), Positives = 142/291 (48%), Gaps = 20/291 (6%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 ++ E +++ L+ + +S+ T+ SY D L+ +A Y E+ I +++ T + + Sbjct: 1 MVTEIDIFIKYLQEVKKMSRNTVLSYHRD----LLQMASYMGER-GITEAGKVTKTSLTS 55 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKY-LKKRKIT-TESNILNMRNLKKSNSLPRALNE 131 +I + ++ R L+ +K+F Y + KI + +++ ++K P L+ Sbjct: 56 YILFMEKEGKATTTISRMLASMKAFFHYEFSEGKIRRNPAELVHAPKIEKKA--PVILSV 113 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNIMDDQSTLR 189 ++ +L+ +S E R+ A+L LLY G+R+SE +L LT N+ T R Sbjct: 114 EEVTSLLKQPSGRSSKEI-----RDKAMLELLYATGIRVSELTSLKLTDINMNIGFITCR 168 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIR 248 G K R +P + A+ +Y + +L + LF G ++ F + I+ Sbjct: 169 ---DGGKDRTIPFSRVAKGAMEDYIENARSELTRKKESDWLFVNCNGGQMSRQGFWKIIK 225 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 G+ T HTLRHSFA HL+ G D++++Q ILGH ++TTQ+Y Sbjct: 226 FYGDKAGIESDITPHTLRHSFAAHLIGGGADMKAVQVILGHSDVATTQMYA 276 >gi|323344611|ref|ZP_08084835.1| tyrosine recombinase XerC [Prevotella oralis ATCC 33269] gi|323093881|gb|EFZ36458.1| tyrosine recombinase XerC [Prevotella oralis ATCC 33269] Length = 293 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 68/306 (22%), Positives = 142/306 (46%), Gaps = 23/306 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L ER S T+++Y+ D + F + +KI ++LS+ + + + + Sbjct: 4 EEFLDYLRYERNRSAQTVKNYDEDLKAFESYF-----KKIN----KELSWESVDSDVIRG 54 Query: 79 RTQKIGDR-----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 + + D+ S+ R LS ++S ++ + + K++ LP+ L E++ Sbjct: 55 WMESMMDKGNIATSINRRLSALRSLYRFALSKGYVDSDPAYGVVGPKRAKPLPQFLKERE 114 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 +D +L T + + + R IL + Y G+R+SE + L ++ ++ GK Sbjct: 115 ----MDELLGLTVWKDGFKNVRAYTILIMFYETGMRLSELVGLNDSSVDFVNRQFKVSGK 170 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 +K R++P + ++ Y +L + LF GK +N + +++ Sbjct: 171 RNKQRLIPFGDELDTSLRMYLELRNESVGRKSD-ALFVTSEGKRMNQDQVRYEVKKNLSK 229 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 + T H LRH+FAT +L++ ++ S++ +LGH + TT++YT+ + + + Sbjct: 230 VCTLKKKTPHVLRHTFATAMLNHDANIESVRKLLGHASVGTTEVYTHTTFEQ----LKRV 285 Query: 314 YDQTHP 319 Y HP Sbjct: 286 YKNAHP 291 >gi|218534740|ref|YP_002424501.1| integrase family protein [Methylobacterium chloromethanicum CM4] gi|218525889|gb|ACK86472.1| integrase family protein [Methylobacterium chloromethanicum CM4] Length = 291 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 50/146 (34%), Positives = 74/146 (50%), Gaps = 8/146 (5%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212 RN +L +LYG GLRISE SL +++ D+ + GKG K R+V L + K + Sbjct: 137 RNRVLLTVLYGGGLRISEVCSLRWRDLAPRDEAGQATVFGKGGKTRVVLLSAATWKVLQA 196 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 + D P+FR +G L+P R ++ GLP +AH LRH+ A+H Sbjct: 197 LREEALADD------PVFRSRKGGALDPSAVHRIVKAAAARAGLPADVSAHWLRHAHASH 250 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIY 298 L G + +Q+ LGH ++TT Y Sbjct: 251 ALDRGAPIHLVQATLGHASVATTGRY 276 >gi|213972135|ref|ZP_03400225.1| SAM-like protein [Pseudomonas syringae pv. tomato T1] gi|302062047|ref|ZP_07253588.1| Phage integrase:Phage integrase, N-terminal SAM-like protein [Pseudomonas syringae pv. tomato K40] gi|302131887|ref|ZP_07257877.1| Phage integrase:Phage integrase, N-terminal SAM-like protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213923112|gb|EEB56717.1| SAM-like protein [Pseudomonas syringae pv. tomato T1] Length = 320 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 76/289 (26%), Positives = 132/289 (45%), Gaps = 28/289 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W NL+ R T ++Y+ D F F+ + ++ R ++ + + A+ ++ Sbjct: 32 WFANLDNPR-----TRRAYQNDLEDFCGFVGLASADEF-----RVVTRSHVLAWRAQLEH 81 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVD 139 + + +++R L+ + S +L ESN + N P+ NE + L D Sbjct: 82 RGLAGATIRRKLAALASLFDHL------LESNAIAGGNPVHGVKRPKIESNEGKTPALGD 135 Query: 140 N---VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194 + LL ET R+ A+L +L GLR EA L +I D + L++ GKG Sbjct: 136 HQAKALLEAPDETTLKGQRDRALLAVLLYHGLRREEAALLQVSDIQDRRGIQHLKVHGKG 195 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL---- 250 K+R +P+ P I +Y + L + ++PLF +RGK G+ I + Sbjct: 196 GKVRYLPMHPVAAGRIHQYLESSGHHL-ADRKVPLFIPLRGKLTGAGITANGIYTVVAAY 254 Query: 251 RRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + G+ + H LR + AT+ L + D+ +Q+ LGH +STT+IY Sbjct: 255 AKKAGIEVDGLGVHGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303 >gi|302874512|ref|YP_003843145.1| integrase family protein [Clostridium cellulovorans 743B] gi|307690879|ref|ZP_07633325.1| site-specific tyrosine recombinase XerC [Clostridium cellulovorans 743B] gi|302577369|gb|ADL51381.1| integrase family protein [Clostridium cellulovorans 743B] Length = 311 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 86/300 (28%), Positives = 139/300 (46%), Gaps = 35/300 (11%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFL--------IFLAFYTEEKITIQTIRQLSYTE 70 + +L L I + S+ T+ Y D F I +A +I ++ I+ ++ + Sbjct: 11 EQYLGYLSIIKNRSENTILEYRIDLLMFFSYILKSRSITVADSNFAQIDLEFIKSINLND 70 Query: 71 IRAFIS---KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLP 126 + +FIS K G R+ R + I+ F KYLK + ++NI + K +P Sbjct: 71 MYSFISYCQKTLNSSAGTRA--RKIVSIRQFWKYLKTKAHVIDNNIAEELETPKLPKRIP 128 Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 + LN +++ L+ E K R+ I+ + C LR+SE SL + +D Sbjct: 129 KYLNLEKSFRLL--------MECKK-SIRDHCIITIFLNCALRLSELASLNIDQVNND-- 177 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAI---LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 TL + GKG+K R + L P+ +KAI L + D N LF + Sbjct: 178 TLSVVGKGNKERKIFLTPAAKKAINNWLHIRNSINVDTN-----ALFISRNSNRITTRAI 232 Query: 244 QRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTNV 301 Q I++ GL S + H LRH+ AT + G D+RS+Q ILGH ++TT+IYT++ Sbjct: 233 QNIIKKYVLSSGLDSKSISTHKLRHTAATLMYKYGRVDIRSLQQILGHESVATTEIYTHI 292 >gi|291544906|emb|CBL18015.1| Site-specific recombinase XerD [Ruminococcus sp. 18P13] Length = 331 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 87/314 (27%), Positives = 145/314 (46%), Gaps = 39/314 (12%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE------------KITIQTIRQLS 67 ++L L I +G S T+ Y D R FL ++ F E + I +RQ++ Sbjct: 15 DYLIFLSIVKGRSPRTVAEYNLDLRLFLKYIKFMKTEHNQPAVEDMDIRDVDITLLRQVT 74 Query: 68 YTEIRAF---ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK-SN 123 +I F + R + DR+ R S +K F YL E N L + Sbjct: 75 LQDIYQFEYYLQDDRQNR--DRARSRKTSAVKGFFSYLTYNMTLLEKNPAEHLELPGVKH 132 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 SLP+ L+ +++L ++ +V + H R+ IL L CG+R+SE + + Q++ Sbjct: 133 SLPKFLSLEESLRMLSSV--ESDHP-----QRDYCILVLFLNCGIRLSELVGINVQDVDM 185 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL---CPFDLNLNIQLPLFRGIRGKPLNP 240 + LRI GKG+K R++ L + AI EY P + N LF + ++ Sbjct: 186 YERRLRILGKGNKERMIYLNDACLSAITEYLQTRKNPPTEPN-----ALFLSRNNRRISR 240 Query: 241 GVFQRYIRQLRRYL---GLPLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQ 296 Q+ + + + G LST H LRH+ AT + +G D +++ ILGH + TT+ Sbjct: 241 RRVQQIVESVLKNADLGGKGLST--HKLRHTAATLMYQHGNVDTLTLKEILGHKSIVTTE 298 Query: 297 IYTNVNSKNGGDWM 310 IYT+++ + D + Sbjct: 299 IYTHLSDEQRQDAI 312 >gi|331698493|ref|YP_004334732.1| Tyrosine recombinase xerC [Pseudonocardia dioxanivorans CB1190] gi|326953182|gb|AEA26879.1| Tyrosine recombinase xerC [Pseudonocardia dioxanivorans CB1190] Length = 310 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 82/318 (25%), Positives = 136/318 (42%), Gaps = 20/318 (6%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 LP V+ L + +L+ ERG S T+++Y D L ++ + Sbjct: 9 TELPPTVAGHL----DAFTAHLDRERGRSSHTVRAYRSDLAGLL--------GRLPGDDL 56 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI-LNMRNLKKS 122 L +R+++++ RS + R +S+ + + + Sbjct: 57 AVLDLGLLRSWLAEAHAAGT-SRSTLARRAAAARTFTAWAHRTGLLDSDPGARLDSPRPQ 115 Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 LP L QA L+D + E + R+ +L LLY G+R++E + ++ Sbjct: 116 RRLPSVLRADQAADLMDAAASGAA-ERDPVALRDQLLLELLYATGVRVAEVCGIDVDDVD 174 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPG 241 T+R+ GKG++ R V +A+ + L P L G+RG+ L+P Sbjct: 175 QSARTVRVLGKGNRERTVVYGVPAERALRTWLAAGRPALARTGGPPALLLGVRGRRLDPR 234 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 V + + + H LRH+ ATHLL G DLR +Q +LGH LSTTQ+YT+V Sbjct: 235 VARSVVHAAVAAVPGAPDIGPHGLRHAAATHLLDGGADLRYVQELLGHATLSTTQLYTHV 294 Query: 302 NSKNGGDWMMEIYDQTHP 319 D + ++DQ HP Sbjct: 295 TV----DRLKVVHDQAHP 308 >gi|227544897|ref|ZP_03974946.1| tyrosine recombinase [Lactobacillus reuteri CF48-3A] gi|300910076|ref|ZP_07127536.1| integrase/recombinase XerD [Lactobacillus reuteri SD2112] gi|227185109|gb|EEI65180.1| tyrosine recombinase [Lactobacillus reuteri CF48-3A] gi|300892724|gb|EFK86084.1| integrase/recombinase XerD [Lactobacillus reuteri SD2112] Length = 297 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 76/292 (26%), Positives = 137/292 (46%), Gaps = 15/292 (5%) Query: 17 ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 E +L L+ +R LS TL SY+ D Q + +L E I +Q+ + + ++ Sbjct: 4 EVAAFLAFLKDKRQLSDNTLMSYQRDLEQTVTYL-----EDRGIDDWQQVDHYLLIDLLN 58 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA---LNEKQ 133 R Q + ++ R +S ++ F KY+ + T N + M + + + + P A L EK+ Sbjct: 59 SLRQQGKANSTINRVISSLRQFYKYMIRHHNLT-INPMEMIDHQYTFNQPPAPVILTEKE 117 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 LL + I R+ A+L ++ G+R+SE ++L + D L++ GK Sbjct: 118 I-----EQLLAVPDVSTPIGLRDRALLEIMDATGMRVSEVIALDLTALHLDVKLLQLTGK 172 Query: 194 GDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 ++ R++PL K + Y + P L + + +F G PL + +++ Sbjct: 173 NERERMIPLSQPAVKWLTGYLNRGRPLLLRDDHETRVFLNAHGYPLTRQGIWKKMKEWVS 232 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + T T+R+SFA HL+ NG D++ IQ ILG+ + Q Y V+ + Sbjct: 233 EAKIKKEVTPQTMRYSFAVHLIENGADVQLIQEILGYNAMKALQPYLQVSPQ 284 >gi|289628758|ref|ZP_06461712.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330870488|gb|EGH05197.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 320 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 76/290 (26%), Positives = 131/290 (45%), Gaps = 30/290 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W NL+ R T ++Y+ D F F+ + + RQ++ + + A+ + Sbjct: 32 WFANLDNPR-----TRRAYQNDLTDFSAFIGLASADDF-----RQVTRSHVLAWRANLEQ 81 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVD 139 + + +++R L+ + S +L ESN + N P+ NE + L D Sbjct: 82 RGLAGATIRRKLAALASLFDHL------LESNAIAGGNPVHGVKRPKIESNEGKTPALGD 135 Query: 140 N---VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194 + LL E+ R+ A+L +L GLR EA L +I + + L+I GKG Sbjct: 136 HQAKALLEAPDESTLKGLRDRAMLAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKG 195 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-----GVFQRYIRQ 249 K+R +PL P I Y + L + ++PLF +RGK G++ + Sbjct: 196 GKVRYLPLHPVAAGRIHWYLERSGHHLG-DKKVPLFISLRGKSTGASISANGIYT-VVEA 253 Query: 250 LRRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + G+ ++ H LR + AT+ L + D+ +Q+ LGH +STT+IY Sbjct: 254 YTKKAGIEVAGLGVHGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303 >gi|237756308|ref|ZP_04584862.1| integrase/recombinase XerD [Sulfurihydrogenibium yellowstonense SS-5] gi|237691535|gb|EEP60589.1| integrase/recombinase XerD [Sulfurihydrogenibium yellowstonense SS-5] Length = 297 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 77/291 (26%), Positives = 129/291 (44%), Gaps = 50/291 (17%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T+++Y D QF+ + + I +++ +I F + Q ++ R L+ Sbjct: 21 TVKNYRVDFNQFIKIVGD--------KNINEITKADIAKFRMTLQMQNRKSSTIARKLAS 72 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + S +YL ++ S I K S +P AL+ ++ L+D +D+ Sbjct: 73 VNSLFQYLMDLELVNSSPITKSHRPKVSQKIPSALSNEEVKKLID-----------ALDS 121 Query: 155 -RNSAILYLLYGCGLRISEALSLTPQNIM--------------------DDQSTLRIQGK 193 ++ AI+ L GLR SE LS+ NI+ D + +R+ GK Sbjct: 122 IQDKAIVILFLTTGLRSSELLSIKKSNIIVERNGQTFSIDRLIEGEVKEGDIAYIRVVGK 181 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 GDK R VP+ + +++Y L + L++ +F P++ + R IR + + Sbjct: 182 GDKEREVPITGKPLEILVQY--LKSINEFLDVNEYIF------PISYHLLWRKIRNIGKK 233 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 L + L H LRH+ AT LS+G +LR IQ +LGH TT Y V K Sbjct: 234 LAITLH--PHKLRHTAATMALSSGAELRVIQELLGHASPVTTARYAKVGQK 282 >gi|229096643|ref|ZP_04227614.1| Integrase/recombinase [Bacillus cereus Rock3-29] gi|228686849|gb|EEL40756.1| Integrase/recombinase [Bacillus cereus Rock3-29] Length = 305 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 81/308 (26%), Positives = 144/308 (46%), Gaps = 24/308 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE----EKITIQTIRQLSYTEIRAF 74 +++L++ E+ GL+ T+QSY +F ++L E E IT Q I+ SY + Sbjct: 9 KDYLEDKELS-GLAPRTIQSYGDTLNEFSLWLTTEKEIINIEDITPQVIK--SYL---LY 62 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK-ITTESNILNMRNLKKSNSLPRALNEKQ 133 SK R + R+ K L +K+F +YL+ I SN N K++ + +++Q Sbjct: 63 CSKERGNAVVTRNGK--LQHLKTFFRYLEDEDVIEIRSNPTNKIKPAKTDKTIKVYSDEQ 120 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 ++ S E R ++ +L G G+R+ E +S+ ++ T+ I GK Sbjct: 121 IKQMLRYYRRMRSRENTLYSYRGHTVIVVLAGTGIRLGELVSMRWDSVDLLNKTITIFGK 180 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLR 251 K PL V + + E+ C I+LP +F RG PL + +L Sbjct: 181 NRKSLSTPLTDKVARELYEWRLFCE---KYYIKLPAHVFNDHRGNPLTVNAVKLMFTRLS 237 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 +G TTAH RH++A++ L G D+ ++ ++ H ++ TT++Y + G+ + Sbjct: 238 VRMGF--KTTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHA----FGNSLA 291 Query: 312 EIYDQTHP 319 E D+ +P Sbjct: 292 ESNDKYNP 299 >gi|254496761|ref|ZP_05109618.1| phage integrase family integrase/recombinase [Legionella drancourtii LLAP12] gi|254354018|gb|EET12696.1| phage integrase family integrase/recombinase [Legionella drancourtii LLAP12] Length = 166 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 55/148 (37%), Positives = 76/148 (51%), Gaps = 22/148 (14%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG------DKIRIVPLLPSVRKAILE 212 I+++L GLR+SE SLT Q+I+ Q +LRI GKG K R+VP+ VR A+LE Sbjct: 21 IIWILIDTGLRVSELCSLTAQDILWQQKSLRITGKGGPYGKKSKKRVVPMSNRVR-ALLE 79 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 +Y + +N P+ Q+ ++ + + T H LRH+FAT Sbjct: 80 HY----YAINERF-----------PVGARQVQKIVKGIANKAKISKQVTPHILRHTFATL 124 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTN 300 L G L S+Q LGH RL TT IY N Sbjct: 125 ALQKGISLASVQKALGHDRLETTAIYLN 152 >gi|186474625|ref|YP_001863596.1| integrase family protein [Burkholderia phymatum STM815] gi|184198584|gb|ACC76546.1| integrase family protein [Burkholderia phymatum STM815] Length = 405 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 83/294 (28%), Positives = 148/294 (50%), Gaps = 28/294 (9%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 R +LQ+L RG + T ++ + FL + +T++ L T++ +I + Sbjct: 110 RSQYLQHLHELRGFAVSTAAQHDSTLKDFL------RRAVLPDRTLQTLGATDVENYI-R 162 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKSNSLPRALNEKQALT 136 +++++ ++L+ ++ +++FL+Y + R IT + ++ ++ PRAL+ K Sbjct: 163 LKSREVTRQTLQHVIAHLRAFLRYCEDRGDITLGLHCIDTPRTYRAELPPRALDWKLVPK 222 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 LV++V H+ T W R+ A+L+L+ GLR SE +LT +I + TL +Q + K Sbjct: 223 LVNSVDRHS--RTGW---RDHAVLHLMAYYGLRASEVAALTLSSINWESRTLHVQQR--K 275 Query: 197 IRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLP-LFRGIRGKPLNP----GVFQRYIRQ 249 R V +LP + I L Y C P LF R P+ P GV + + Sbjct: 276 TRSVLVLPLADRTINLLRRYLRCG---RSGSDCPALFLRAR-SPVGPLTHYGVVDIFCTR 331 Query: 250 LRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 R GLP++ ++++ LRH+FA LL G ++I ILGH L +T +Y ++ Sbjct: 332 AR-LSGLPITNSSSYALRHAFAMRLLDRGVGTKAIGDILGHRSLESTCVYLRLD 384 >gi|319787522|ref|YP_004146997.1| integron integrase [Pseudoxanthomonas suwonensis 11-1] gi|317466034|gb|ADV27766.1| integron integrase [Pseudoxanthomonas suwonensis 11-1] Length = 335 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 102/224 (45%), Gaps = 48/224 (21%) Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174 N+ K+ LP L+ Q + L++ + R + + LLYG GLR+ E Sbjct: 109 NVVRAKRPRRLPVVLSRAQVVRLLER-----------LSGREALMAGLLYGSGLRLMECA 157 Query: 175 SLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAIL----EYYDLCPFDLNLN---IQ 226 L +++ +++ L I+ GKG K R+ L ++R+A+L E L DL + Sbjct: 158 RLRVKDVDLERNELTIRDGKGGKDRMTVLPGALREALLRQLAEVRLLHARDLACGLGRVH 217 Query: 227 LP--LFRGIRGKPLNPG---------------------------VFQRYIRQLRRYLGLP 257 LP L R PG V Q +R+ R G Sbjct: 218 LPHALARKYPNAAAEPGWQYVFPATRISVDPRDGVRRRHHIDEKVLQSAVRRAAREAGFD 277 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T HTLRH FATHLL +G D+R++Q +LGH ++TTQIYT+V Sbjct: 278 KPVTPHTLRHCFATHLLESGADIRTVQELLGHKDVATTQIYTHV 321 >gi|13488149|ref|NP_085856.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|14028105|dbj|BAB54697.1| integrase/recombinase [Mesorhizobium loti MAFF303099] Length = 299 Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 80/151 (52%), Gaps = 8/151 (5%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213 ++ IL Y GLRISEA+ L P+ I + LR+ QGKG K R V L + + + +Y Sbjct: 126 KHQTILTTCYAAGLRISEAVHLRPEAIDRQRMVLRVDQGKGQKDRYVMLSARLLETLTDY 185 Query: 214 YDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 + + + +F G I +P++ Q + R GL T H+LRH+FA H Sbjct: 186 WR------AVRPKTWMFPGTIPNEPISTNAVQNACGKAHRLSGLGKPVTPHSLRHAFACH 239 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 LL G D+R+IQ +LGH LSTT Y + + Sbjct: 240 LLEAGTDIRTIQLLLGHRSLSTTSQYLRIAT 270 >gi|302878649|ref|YP_003847213.1| integrase family protein [Gallionella capsiferriformans ES-2] gi|302581438|gb|ADL55449.1| integrase family protein [Gallionella capsiferriformans ES-2] Length = 298 Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 77/295 (26%), Positives = 140/295 (47%), Gaps = 27/295 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK- 77 Q++L + LS+ TL++Y D F T + L+ ++R FI Sbjct: 8 QSFLSHCRSAVSLSEHTLRAYTFDLEDFQNHAQHETNLSL-------LNKDDLRKFIRHL 60 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM-RNLKKSNSLPRALNEKQALT 136 R +K+ + ++KR ++ +K +++++ + + + N+ ++ LPRAL ++ Sbjct: 61 REERKLKEITIKRRIACLKLLFRWVQQENMISINPFDNLNERIRLPKRLPRALGSEEIKL 120 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L + L + + ++ + LL G+R+ E + + ++++ +L+IQGKG++ Sbjct: 121 LTGAINLEAT-DKEFQEFVTGIATKLLLTTGIRVGELVKIDIEDLVLPDCSLKIQGKGNR 179 Query: 197 IRIVPLL-PSVRKAILEYYDLCPFDLNLNIQLP-------LFRGIRGKPLNPGVFQRYIR 248 R+V L P + +AI Y L I+L LF G P + + Sbjct: 180 QRLVYLFEPKLNQAIARY---------LTIRLTRATETKKLFITEAGIPFTTQKTRILLG 230 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 L G+ T H LRH+ AT LL G D+R +Q +LGH +STT+IYT+V Sbjct: 231 DLASKAGIERRITPHMLRHTTATQLLEAGLDIRYVQKLLGHQSISTTEIYTHVTD 285 >gi|251797061|ref|YP_003011792.1| integrase family protein [Paenibacillus sp. JDR-2] gi|247544687|gb|ACT01706.1| integrase family protein [Paenibacillus sp. JDR-2] Length = 305 Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 75/260 (28%), Positives = 119/260 (45%), Gaps = 37/260 (14%) Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-PRAL 129 I ISK+R GDR+ R+LS I+SF L ++ T + + ++ K + P L Sbjct: 60 ISFLISKQRGA--GDRARNRTLSAIRSFYTALIDFEMATRNPAMEVKKSKTEKNKKPVYL 117 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 E + + + + E ++ ARN AI L+ CGLR+ E L + + T+ Sbjct: 118 EEDELASSLSCI------EGRY-RARNVAIFLLMSYCGLRVGEVHRLNRSDFNPVRGTIE 170 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYD---LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 + GKG K +P+ P A+L + P+ + F +G+ L+ Sbjct: 171 VFGKGRKWNEIPV-PEELAAVLSEVAQDRITPYKEQED---AFFVSQKGRRLS------- 219 Query: 247 IRQLRRYLGLPLST-------------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 IRQ+++ G + H LRH+FAT LL NG D+R ++ +LGH + Sbjct: 220 IRQIQKIAGQTFEAFKSINPHAANKKLSCHKLRHTFATILLKNGVDIRVVKELLGHASIE 279 Query: 294 TTQIYTNVNSKNGGDWMMEI 313 TT IYT+VN + M I Sbjct: 280 TTMIYTHVNDDQKKEAMATI 299 >gi|253995768|ref|YP_003047832.1| integron integrase [Methylotenera mobilis JLW8] gi|253982447|gb|ACT47305.1| integron integrase [Methylotenera mobilis JLW8] Length = 321 Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 76/284 (26%), Positives = 124/284 (43%), Gaps = 58/284 (20%) Query: 64 RQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122 R++ E+ AF+S T + + ++LS + + + + +++ KK Sbjct: 45 REMGGAEVEAFLSHLATHGNVSSSTQNQALSALLFLYREVLGLSLPWMDDVVRA---KKP 101 Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 LP L++++ ++D+ + A + I LLYG G+RI E L Q+I Sbjct: 102 QRLPVVLSKQEVAKILDH-----------MQATHGLIARLLYGTGIRIMECCRLRVQDID 150 Query: 183 DDQSTLRIQ-GKGDKIRIVPLLPSV----------RKAILEY------------------ 213 D+ L I+ GKG K R+ L S+ RKA+ Sbjct: 151 FDRGELLIRNGKGAKDRVTMLPKSLIEPLKAHLVWRKALFHADEAKGKAEVYLPDALERK 210 Query: 214 -----------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 Y C +++ P R L+ + QR +++ G+ T Sbjct: 211 YVNAATSWAWQYVFCSGSYSVD---PRSGRERRHHLDEKLVQRAVKKAVGLAGIDKLATP 267 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 HT RHSFATHLL +G D+R++Q +LGH +STT IYT+V +K G Sbjct: 268 HTFRHSFATHLLESGYDIRTVQELLGHSDVSTTMIYTHVLNKGG 311 >gi|253988421|ref|YP_003039777.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253988443|ref|YP_003039799.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253990479|ref|YP_003041835.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638830|emb|CAR67446.1| probable integrase/recombinase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638952|emb|CAR67567.1| probable integrase/recombinase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779871|emb|CAQ83032.1| putative phage integrase/recombinase [Photorhabdus asymbiotica] gi|253779893|emb|CAQ83054.1| Phage integrase [Photorhabdus asymbiotica] gi|253781929|emb|CAQ85093.1| phage integrase [Photorhabdus asymbiotica] Length = 340 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 62/182 (34%), Positives = 93/182 (51%), Gaps = 19/182 (10%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213 RN A+L L+ G+R +E ++L +I + + + QGK R+VP+ A LE Sbjct: 149 RNRAVLEALWSTGIRRTELINLRLGDIDRHRGVVVVRQGKNGHDRVVPIGERA-LAWLER 207 Query: 214 Y--DLCP-----FDLNLNIQLPLFRGIRGKPLNPGVF-QRYIRQLRRYLGLPLSTTAHTL 265 Y D+ P +D +F +RG PL+ Q +R L + + H Sbjct: 208 YLADVRPQLAYRYDSGY-----VFITVRGNPLSRNTLTQMAGHTIREEAKLDKAGSCHVF 262 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325 RHS AT +L NG D R IQ+ILGH +L TTQIYT V + + E+++QTHP+ + Sbjct: 263 RHSMATQMLENGADTRHIQAILGHKKLETTQIYTRVAIGH----LKEVHEQTHPAERKPK 318 Query: 326 KK 327 K+ Sbjct: 319 KQ 320 >gi|120435311|ref|YP_860997.1| phage integrase family protein [Gramella forsetii KT0803] gi|117577461|emb|CAL65930.1| phage integrase family protein [Gramella forsetii KT0803] Length = 385 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 69/223 (30%), Positives = 106/223 (47%), Gaps = 27/223 (12%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S ++ +S +K + ++ + E I + KKS LP L++++ + L+ Sbjct: 152 SHRQCISALKHYFEFSDQ----AEFEISELVRPKKSRFLPTVLSKEEIIDLL-------- 199 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPS 205 T+ + R IL L+Y GLR+ E ++L ++I +D + L Q KG K R V L S Sbjct: 200 RLTRNLKHR--CILALIYSSGLRVGELINLHLKDIDIDRKQILIKQAKGRKDRYVMLAES 257 Query: 206 VRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 + Y L P G K + + +++ R + T Sbjct: 258 FLPLLYNY---------LQTYEPKRYFTEGYDNKKYSSSAIRSFLKDSCRRAKISKKVTP 308 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 HTLRHSFATH+L NG DLR IQ +LGH + TT IYT+V K+ Sbjct: 309 HTLRHSFATHMLENGTDLRYIQELLGHSKPETTMIYTHVAKKD 351 >gi|218662079|ref|ZP_03518009.1| site-specific tyrosine recombinase XerC [Rhizobium etli IE4771] Length = 100 Score = 82.8 bits (203), Expect = 7e-14, Method: Composition-based stats. Identities = 46/99 (46%), Positives = 62/99 (62%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 N L I L+ ER WL+NL ER LS+ TL +YE DTRQFL FL + T+ I Sbjct: 2 NELLVIADPRLMAERAAWLENLARERRLSEHTLDAYERDTRQFLTFLTGHLAGPATLSDI 61 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102 R+L + RAF++ RR Q G RSL R+L+G++S L++L Sbjct: 62 RELRPADFRAFLAARRKQGSGARSLGRNLAGLRSLLRHL 100 >gi|192361592|ref|YP_001983640.1| integrase [Cellvibrio japonicus Ueda107] gi|190687757|gb|ACE85435.1| integrase [Cellvibrio japonicus Ueda107] Length = 323 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 75/244 (30%), Positives = 111/244 (45%), Gaps = 55/244 (22%) Query: 105 RKITTESNILNMRNLK--KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL 162 R+I + L +R +K K+ LP L + L+ N I + + L Sbjct: 81 REILHKPLSLELRFVKSQKTRKLPVVLTRDEITALMAN-----------ISSNHYLPAAL 129 Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI------LEY-- 213 +YG GLR+ EA+ L ++I D +R+ GKG K R V L P ++K + +EY Sbjct: 130 MYGSGLRLMEAVRLRTKDIDFDYCCVRVWNGKGGKHRTVTLAPELKKPLTVQIQRVEYLL 189 Query: 214 --------YD-----------------------LCPFDLNLNIQLPLFRGIRGKPLNPGV 242 YD L P D L+I P + +R ++ Sbjct: 190 SKDLLNPTYDGVWLPHALRHKYVSANTSLGWQYLFPSD-RLSID-PENQRVRRHHIDESG 247 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 Q+ IR + + +AHTLRHSFATHLL++G D+R++Q LGH + TTQIYT+V Sbjct: 248 LQKAIRNASQKANIRKHVSAHTLRHSFATHLLASGADIRTVQDQLGHTDVKTTQIYTHVL 307 Query: 303 SKNG 306 G Sbjct: 308 QMGG 311 >gi|257898705|ref|ZP_05678358.1| integrase-recombinase [Enterococcus faecium Com15] gi|257836617|gb|EEV61691.1| integrase-recombinase [Enterococcus faecium Com15] Length = 313 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 76/294 (25%), Positives = 144/294 (48%), Gaps = 28/294 (9%) Query: 26 EIERGLSKLTLQSYECDTRQFL-IFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 E RG+S+ T++ ++ +FL +F F +E+I I ++ IR F+ + + Sbjct: 5 EKARGISQKTIKKHQ----KFLKLFFEFLKKEQIYF--IEDVTPKSIRQFMLMKLEEGCA 58 Query: 85 DRSLKRSLSGIKSFLKY-LKKRKITTESN-ILNMRNLKKSNSLPRALNE---KQALTLVD 139 + + L I+++ KY + + I + N + ++ +K+ + + N+ K+ L + Sbjct: 59 ETYVNSHLRSIRAYFKYCVDEDYIRYDRNPCMRVKWVKERKVIIQTFNDMEIKEMLNVAK 118 Query: 140 NVLL---------HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 + HT ++TK+ + R+ +L +L GLRI+E ++L +I + + + Sbjct: 119 KLTFFKPQKMDKQHTGYQTKFTNQRDYLLLLILVDTGLRINEVMNLKDFHITNKELFVE- 177 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCP--FDLNL--NIQLPLFRGIRGKPLNPGVFQRY 246 GKG K RIV P + K ++Y + F+ N NI +F GK N + +R Sbjct: 178 NGKGKKDRIVHCSPLIYKEYIKYKRVANSFFEYNEIENIDNYVFLTREGKQYNYILAERA 237 Query: 247 IRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 I ++ + + + H+ RH FA L+ NG D+ IQ +LGH + TT++Y Sbjct: 238 IIKIGNQCKIRKSIRVSPHSFRHYFAQKLVRNGTDIYRIQKLLGHASIKTTEVY 291 >gi|269955978|ref|YP_003325767.1| integrase family protein [Xylanimonas cellulosilytica DSM 15894] gi|269304659|gb|ACZ30209.1| integrase family protein [Xylanimonas cellulosilytica DSM 15894] Length = 329 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 78/301 (25%), Positives = 134/301 (44%), Gaps = 14/301 (4%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 ++L+ +RG S T ++Y D L + + + L +R ++ + + Sbjct: 37 KHLDAQRGHSVHTRRAYLADVTGLLRYAVRHGAHGMD-----DLQLPVLRGWLGAQADRG 91 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV- 141 + +L R + ++FL++ +T + + K +LP L A ++D Sbjct: 92 LARATLARRGAAARAFLRWAHHTGLTDADASARLASPKVPRTLPTVLTPDAAARMLDTAR 151 Query: 142 --LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 L + + R A LLYG G+R+ E +++ ++ + +R+ GKG K R+ Sbjct: 152 DDALAAEGDDRPAALRAWAAAELLYGSGIRVGELVAVDVHDVDVRERLVRVLGKGGKERV 211 Query: 200 VPL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VP +P+ R D P L G RG + + +L G+ Sbjct: 212 VPFGVPAARALTAWLDDGRPALARAGAGTALLVGDRGGRWGQRQAREAVHRLAARAGVD- 270 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 H LRHS ATHLL G DLRS+Q +LGH L+TTQ YT+V+++ + ++Y Q Sbjct: 271 DVAPHALRHSAATHLLQGGSDLRSVQEVLGHANLATTQRYTHVDAER----LRQVYTQAF 326 Query: 319 P 319 P Sbjct: 327 P 327 >gi|254431901|ref|ZP_05045604.1| integron integrase [Cyanobium sp. PCC 7001] gi|197626354|gb|EDY38913.1| integron integrase [Cyanobium sp. PCC 7001] Length = 325 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 84/334 (25%), Positives = 154/334 (46%), Gaps = 67/334 (20%) Query: 7 PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66 PE L++ + LQ R ++ T+++YE R+FL F ++ R++ Sbjct: 5 PEAKPAGLIQRYREELQT----RHYARRTVKTYELWLRRFLRF--------HNLRHPREM 52 Query: 67 SYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 E+ +F++ ++ + ++L+ + + L R + + ++ RN ++ L Sbjct: 53 GSAEVNSFLTHLAVDLQVSPSTQNQALAALLFLYRELLDRDLELD-GVVRARNRRR---L 108 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 P L+E + + D+ ++ + ++ LLYG GLR+ EAL L +++ ++ Sbjct: 109 PVVLSEAEVRAVRDH-----------LEGDPALVVGLLYGSGLRLMEALRLRVKDLDFER 157 Query: 186 STLRIQ-GKGDKIRIVPLLPSVRKAILEYY----------DLCPFDLNLNIQLPLFR--- 231 L ++ GKG K R+ LLP A L+++ DL + + L R Sbjct: 158 RELSVRDGKGGKDRLT-LLPQSLVADLKHHLLGVRRLHRLDLAAGWGQVLMPHALARKYP 216 Query: 232 -----------------------GIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 G +G+ L+P + Q+ +++ G+ + + HT RH Sbjct: 217 NAAREWAWQWVFPQEHRWHDRTSGTQGRHHLDPSLVQKAVKRAVTAAGVSKAASCHTFRH 276 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 SFATHLL G D+R+IQ +LGH +STT IYT+V Sbjct: 277 SFATHLLERGQDIRTIQELLGHKDVSTTMIYTHV 310 >gi|256390723|ref|YP_003112287.1| integrase family protein [Catenulispora acidiphila DSM 44928] gi|256356949|gb|ACU70446.1| integrase family protein [Catenulispora acidiphila DSM 44928] Length = 327 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 98/239 (41%), Gaps = 35/239 (14%) Query: 112 NILNMRNLKKSNSLPRALNEKQ-ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170 ++ + K + LP L+++Q L +H + R+ AIL LY R+ Sbjct: 91 GLVRLVTPKPRSPLPAVLSQRQMTDALTTAADDAATHPHDPLALRDLAILEFLYATAARV 150 Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVP------------LLPSVRKAILEYYDLCP 218 SE +L ++ + T R+ GKG + R VP L R A+L Sbjct: 151 SEVCALNLDDVDFTRRTARLSGKGGRDRTVPFGVPAERALHAWLAADARGAVLAAARANG 210 Query: 219 FDLNLNIQL------------------PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 +F G RG ++P V +R + R T Sbjct: 211 ARRAGAAAAAAVGWVGGGGGIQKTETEAVFLGARGSRIDPAVVRRLVHARLRATPNTPDT 270 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H RH+ ATHL+ G DLR +Q +LGH L+TTQIYT+V ++ + Y Q+HP Sbjct: 271 GPHGFRHTAATHLIEGGADLRDVQELLGHATLATTQIYTHVTAER----IKARYAQSHP 325 >gi|91214773|ref|ZP_01251746.1| tyrosine type site-specific recombinase [Psychroflexus torquis ATCC 700755] gi|91187200|gb|EAS73570.1| tyrosine type site-specific recombinase [Psychroflexus torquis ATCC 700755] Length = 379 Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 74/275 (26%), Positives = 124/275 (45%), Gaps = 30/275 (10%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 +G SK T+ +Y+ + F + + + +T + I + I + KI + + Sbjct: 105 KGFSKNTVDNYKSSLKPFFKYFENQSLKSVTKEQIEGYVFELISKY-------KISESAQ 157 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 ++ IK + ++ + N+ KKS LP L+ + ++++ Sbjct: 158 NTIINAIKCYYEHT----LGLPREYYNITRPKKSQDLPNILHINEVRRIINSPS------ 207 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVR 207 + ++ IL+ +YG GLR+ E + L +I ++ + I+ KG K R L + Sbjct: 208 ----NLKHKTILHTIYGAGLRVGELIRLRVVDIRSEEGYIFIKDSKGKKDRHTVLSKHLL 263 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR-YIRQLRRYLGLPLSTTAHTLR 266 + + EYY + LF G G + Q Y + ++ G P ST HTLR Sbjct: 264 ELLREYYKI------YKPAYWLFEGQTGGQYSSTSIQSIYRKAVKETNGNPWST-PHTLR 316 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 HSFATHL+ G LR IQ+ LGH TT+IYT V Sbjct: 317 HSFATHLMERGTSLRHIQAALGHNSSKTTEIYTRV 351 >gi|332994570|gb|AEF04625.1| integrase [Alteromonas sp. SN2] Length = 322 Score = 82.4 bits (202), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 62/178 (34%), Positives = 83/178 (46%), Gaps = 38/178 (21%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLL----------------- 203 LLYG GLR+ EA+ L ++I D + +RI GKG K R+V L Sbjct: 128 LLYGSGLRLMEAVRLRVKDIDFDYNAIRIWDGKGGKHRVVTLASELKPGLNRQISVVESY 187 Query: 204 -------PSVRKAILEY-----YDLCPFDLNLNIQLPLFR--------GIRGKPLNPGVF 243 PS + L + Y P +L + P R R ++ Sbjct: 188 LIADLDNPSYQGVYLPHRLRVKYQNAPKELGWHYLFPSARLSVDPENGKTRRHHIDESSI 247 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 Q+ IR GL T HTLRHSFATHLL +G D+R++Q+ LGH + TTQIYT+V Sbjct: 248 QKAIRITASACGLKKKVTPHTLRHSFATHLLQSGADIRTVQTQLGHSDVKTTQIYTHV 305 >gi|332076314|gb|EGI86780.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus pneumoniae GA41301] Length = 298 Score = 82.4 bits (202), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 82/287 (28%), Positives = 131/287 (45%), Gaps = 24/287 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L + + LS T+++Y+ D QF Y + Y + ++I K Sbjct: 9 YLDYCKTHKRLSSHTIRAYKNDLMQF------YNSD-----------YDNVESYIEKLTR 51 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALN----EKQAL 135 I +L+R ++ +K F YLK + I E+ +R + LP+ + + + Sbjct: 52 SNIKTNTLRRKIACMKVFYNYLKYQNIIEENPFNQLRFQFRTEKVLPKTIPYDILKSIFI 111 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L V++ + K RN I+ LL G+RISE + ++I TL I GKG Sbjct: 112 YLEQKVIVSKTDYQKQHAERNLLIISLLLSTGIRISELCHIHLKDINLSNKTLHIIGKGK 171 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 K RI+ L +LE Y + + + P + KPL+ + I+++ Sbjct: 172 KERILFLGDQKTFNLLETYINKTRNESNDFLFPGKHSL--KPLSEQSVRLVIKRIVEQNN 229 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + T H RHSFAT LL + D+R IQ ILGH +S TQIYT+V+ Sbjct: 230 FSRTITPHMFRHSFATMLLDSDVDIRYIQQILGHSSISITQIYTHVS 276 >gi|92116456|ref|YP_576185.1| phage integrase [Nitrobacter hamburgensis X14] gi|91799350|gb|ABE61725.1| phage integrase [Nitrobacter hamburgensis X14] Length = 289 Score = 82.4 bits (202), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 109/232 (46%), Gaps = 38/232 (16%) Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 +G + +++S ++ F K R E +++ + LP L+ ++ L+D V Sbjct: 65 VGVPTANQTVSTLRFFFKVTLGRADLVERTAF----VREPSKLPVVLSPEEVACLLDAV- 119 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVP 201 + A L + YG GLR+SE ++L NI + +R+ QGKG + R V Sbjct: 120 ---------PALKYKAALSVAYGAGLRVSEVVALKVGNIDSKRMIIRVEQGKGREYRYVM 170 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-------- 253 L P + + + +Y Q LF G R + V Q RQL R Sbjct: 171 LSPHLLELLRAWYKAA------RPQGWLFPG-RDR-----VRQMTTRQLNRACHAAADMA 218 Query: 254 -LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 +G P+S HTLRHSFATHLL D+R IQ +LGH +L TT +Y V +K Sbjct: 219 EIGKPVSM--HTLRHSFATHLLEQNIDIRVIQVLLGHAKLDTTALYARVATK 268 >gi|332297767|ref|YP_004439689.1| integron integrase [Treponema brennaborense DSM 12168] gi|332180870|gb|AEE16558.1| integron integrase [Treponema brennaborense DSM 12168] Length = 398 Score = 82.4 bits (202), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 75/277 (27%), Positives = 128/277 (46%), Gaps = 52/277 (18%) Query: 66 LSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 LS TEI F+++ T+K + + ++L+ + + +Y+K T N+ ++ KK+ Sbjct: 124 LSQTEINLFLTELVTEKNVSASTQNQALAALLFYFRYIKG---TEPCNLASVIRAKKTVH 180 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 +P ++ + + D + I LLYG G+R+SE L L Q+I Sbjct: 181 IPVVFSKDEVRAIFDQ-----------LSDEKLLIAQLLYGTGMRLSECLCLRIQDIDFA 229 Query: 185 QSTLRIQ-GKGDKIR--IVP--LLPSVRKAILEYYDLCPFDLNLN---IQLPLF------ 230 + + I+ GKG K R ++P L +R I+ L D+ + LP Sbjct: 230 HNMIIIRNGKGAKDRRTMLPHILEKKIRAHIVSVKQLHQADIADGWGVVTLPFALRKKYS 289 Query: 231 ----------------------RGIRGK-PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 G++G+ ++ + +R +++ R G+ HT RH Sbjct: 290 GASADFAWQWVFPQKNRWKNTDTGMQGRYHIDASIMERAVQKAVRDAGIYKRGNCHTFRH 349 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 SFATHLL NG D+R++Q +LGH + TT IYT+V +K Sbjct: 350 SFATHLLENGYDIRTVQELLGHSDVKTTMIYTHVLNK 386 >gi|228964325|ref|ZP_04125444.1| Integrase [Bacillus thuringiensis serovar sotto str. T04001] gi|228795422|gb|EEM42910.1| Integrase [Bacillus thuringiensis serovar sotto str. T04001] Length = 376 Score = 82.4 bits (202), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 79/293 (26%), Positives = 140/293 (47%), Gaps = 26/293 (8%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTE--EKIT-----IQTIRQLSYTEIRAFISKRRTQK 82 GL+K TL E FL+F + E E +T TIR+ Y I + Sbjct: 79 GLAKRTL---ENKKGYFLVFHRYLEERHEDVTPNTLDTNTIREFLYYLKNDHIKHKNNHC 135 Query: 83 IGDR--SLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 I ++ S+ S+S I + +K+++ E + + K SL A + +AL+ VD Sbjct: 136 IKEKYKSIGVSVSYINTIMKHMRAFYNFLVEEEYVQLNPFTKIKSLKEAQDNIEALS-VD 194 Query: 140 NV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KG 194 + LL ++ + R+ ++ LL G+RISEAL+L +++ + + ++G K Sbjct: 195 QLKTLLKQPNQRTYAGFRDYVLMMLLADTGMRISEALNLQQEDLDFKTNIIELKGTNTKN 254 Query: 195 DKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 + R VP+ K + E ++ FD L +F + G ++P F++ ++ Sbjct: 255 RQTRYVPISQKTSKLLRELLVEIEEFD-----TLHIFATVYGNAIDPARFRQRLKMYGHN 309 Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 G+ + + HT RH+FA + L N GD+ ++Q ILGH + + Y N+ SK+ Sbjct: 310 SGIKGVRVSPHTFRHTFAKYYLLNNGDVMTLQKILGHSSIEMVRKYINMTSKD 362 >gi|313148282|ref|ZP_07810475.1| phage integrase [Bacteroides fragilis 3_1_12] gi|313137049|gb|EFR54409.1| phage integrase [Bacteroides fragilis 3_1_12] Length = 413 Score = 82.4 bits (202), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 72/265 (27%), Positives = 130/265 (49%), Gaps = 19/265 (7%) Query: 53 YTEEKITIQTIRQLSYTEIRA-----FISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRK 106 Y++ K +QT++ S +I +I KR + R++ +++ ++ F KY +++ Sbjct: 143 YSQLKTMMQTLKVDSLEDITPSILDNYICKRHDEDGCNRRTIAATVTILRGFFKYAEEKG 202 Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVD-NV---LLHTSHETKWIDARNSAILYL 162 + + +++ PR + + V N+ +L + +T I R+ AIL L Sbjct: 203 LCNPGLVYSLKA-------PRVYAHENLPSFVPYNIVQQILQSKKDTAGIGVRDYAILLL 255 Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221 L GLR SE ++ ++I TL ++ K + +++PLLP V AI+ Y F+ Sbjct: 256 LSVYGLRCSEVTNMKLKDIDWRNETLYLRRAKNCRPQVLPLLPIVGNAIVRYIKEVRFNK 315 Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-HTLRHSFATHLLSNGGDL 280 + L L + + L+ +++ + GL L H+LRH+ ATHL++ G L Sbjct: 316 SKKEYLFLCKRAPHEQLSTSTIYNLVKKELKDKGLELRHYGPHSLRHTCATHLINTGHSL 375 Query: 281 RSIQSILGHFRLSTTQIYTNVNSKN 305 + I +LGH L TT+IY V+ KN Sbjct: 376 KEIADLLGHVGLDTTRIYAKVDIKN 400 >gi|283479906|emb|CAY75822.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163] Length = 351 Score = 82.4 bits (202), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 87/324 (26%), Positives = 142/324 (43%), Gaps = 35/324 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++WL +L + G S T+Q Y R FL + E I Q+S + A+ Sbjct: 26 ESWLAHLVVA-GRSPRTVQGYRERVRAFLAWC-----EPRGITXAPQVSLAVLEAYQRWL 79 Query: 79 RTQKIGD------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNE 131 + + D S L+ I+ ++L +R + + + K+ LP + +E Sbjct: 80 QGYRRADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPAQVFSE 139 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 + ++ ++ T RN AIL LL+ G+R SE L ++ + + ++ Sbjct: 140 AETRRVLQSLDAGTP-----PGXRNRAILELLWSSGIRRSELAGLLLSDVDFTRGVVNVR 194 Query: 192 -GKGDKIRIVPLLPSVRKAILEYY-DLCP-----FDLNLNIQLPLFRGIRGKPLNPGVFQ 244 GKG K R+VP+ + + Y D+ P FD LF +G L G Sbjct: 195 RGKGGKDRVVPVGHTALMWLGRYLKDVRPRLAQRFDSGX-----LFISHKGTGLAHGTLT 249 Query: 245 RYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 R +R L + H RH AT +L NG D R IQ+ILGH +L TTQIYT V Sbjct: 250 AMAGRAIREGAHLKXAGACHIFRHXMATQMLENGADTRHIQAILGHEKLETTQIYTRVAI 309 Query: 304 KNGGDWMMEIYDQTHPSITQKDKK 327 + + +++ THP+ ++ +K Sbjct: 310 GH----LQKVHAHTHPAEKRRTEK 329 >gi|313148284|ref|ZP_07810477.1| phage integrase [Bacteroides fragilis 3_1_12] gi|313137051|gb|EFR54411.1| phage integrase [Bacteroides fragilis 3_1_12] Length = 337 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 80/291 (27%), Positives = 135/291 (46%), Gaps = 31/291 (10%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTE---EKITIQTIRQLSYTEIRAFISKRRTQKIGD 85 R LS TL+SY R + F+A + +KI + I + + + R+ I Sbjct: 25 RNLSANTLKSYRDAIRLLMPFVAKCVKKEVDKILLADITDARVVDFLDSLERNRSCSIKT 84 Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD----NV 141 R+L+ L+ + SF KY+ + +I RN++ +P E+ +T ++ N Sbjct: 85 RNLR--LAAVCSFAKYIS---VNCPEHIEWSRNIR---IIPVKKTERTLITYLEKEEMNA 136 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ----STLRIQGKGDKI 197 LL + R+ A+L LY G R EA +L +++ + + + I GKG+K Sbjct: 137 LLDAPDKNTSQGWRDYALLLFLYNTGARADEAATLLIRDLSLPKRKGLAVVSITGKGNKT 196 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQ---RYIRQLRRY 253 R PL R A L N +F G+P+ G+++ RY +++ Sbjct: 197 RRCPLWQHTRDA------LSSIIKNRTKDEYVFLNRFGQPITRFGIYEMVTRYAEKIKEL 250 Query: 254 LGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + + HT+RH+ ATHLL +G D+ +I++ LGH ++TT IY VN Sbjct: 251 IPTIKKKRVSPHTIRHTTATHLLQSGVDINTIRAWLGHVSINTTNIYAEVN 301 >gi|308070088|ref|YP_003871693.1| integrase/recombinase y4qK [Paenibacillus polymyxa E681] gi|305859367|gb|ADM71155.1| Putative integrase/recombinase y4qK [Paenibacillus polymyxa E681] Length = 358 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 81/290 (27%), Positives = 133/290 (45%), Gaps = 43/290 (14%) Query: 17 ERQNW-------LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69 ER W +++ + R S T+++Y T +F L TE I +++ + Sbjct: 96 ERGEWNPDQRQEMRDALVARSYSSKTIKAYISQTERFFAGLQG-TEASINDAVVQKYALV 154 Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 + +S + +++S +K + +++ K+ + + KK + LP L Sbjct: 155 LLEKGLS--------HAYVNQAISALKFYFRHVLKQPKSA-----DYVRPKKESKLPDVL 201 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 + + + L+ V + ++ AILYL Y GLR+SE + L ++ ++ L+ Sbjct: 202 SLNEVMHLLKAVK----------NPKHKAILYLTYTSGLRVSEVVRLRLEDCDRERKVLK 251 Query: 190 I-QGKGDKIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIR-GKPLNPGVFQR 245 + QGKG K R LL A++E Y P D LF G R G+ L Q+ Sbjct: 252 VRQGKGRKDRQT-LLSEAAFAVVEQYRGVEQPADW-------LFPGQREGRHLTERSAQK 303 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 + G+ + H+LRHSFATHLL NG DLR IQ +LGH + TT Sbjct: 304 VFEKALAEAGIRKQVSIHSLRHSFATHLLENGIDLRYIQELLGHQSVRTT 353 >gi|255010479|ref|ZP_05282605.1| phage integrase [Bacteroides fragilis 3_1_12] Length = 338 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 80/291 (27%), Positives = 135/291 (46%), Gaps = 31/291 (10%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTE---EKITIQTIRQLSYTEIRAFISKRRTQKIGD 85 R LS TL+SY R + F+A + +KI + I + + + R+ I Sbjct: 26 RNLSANTLKSYRDAIRLLMPFVAKCVKKEVDKILLADITDARVVDFLDSLERNRSCSIKT 85 Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD----NV 141 R+L+ L+ + SF KY+ + +I RN++ +P E+ +T ++ N Sbjct: 86 RNLR--LAAVCSFAKYIS---VNCPEHIEWSRNIR---IIPVKKTERTLITYLEKEEMNA 137 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ----STLRIQGKGDKI 197 LL + R+ A+L LY G R EA +L +++ + + + I GKG+K Sbjct: 138 LLDAPDKNTSQGWRDYALLLFLYNTGARADEAATLLIRDLSLPKRKGLAVVSITGKGNKT 197 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQ---RYIRQLRRY 253 R PL R A L N +F G+P+ G+++ RY +++ Sbjct: 198 RRCPLWQHTRDA------LSSIIKNRTKDEYVFLNRFGQPITRFGIYEMVTRYAEKIKEL 251 Query: 254 LGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + + HT+RH+ ATHLL +G D+ +I++ LGH ++TT IY VN Sbjct: 252 IPTIKKKRVSPHTIRHTTATHLLQSGVDINTIRAWLGHVSINTTNIYAEVN 302 >gi|332521448|ref|ZP_08397902.1| integrase family protein [Lacinutrix algicola 5H-3-7-4] gi|332042847|gb|EGI79046.1| integrase family protein [Lacinutrix algicola 5H-3-7-4] Length = 279 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 52/153 (33%), Positives = 83/153 (54%), Gaps = 7/153 (4%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAIL 211 + ++ A+L +Y GLR E +++ ++I D++ + I+ GKG K R++PL S+R Sbjct: 121 NIKHKAMLTAIYALGLRSGELINIKIEDINSDRNQIFIRSGKGRKDRVLPLPNSLRVLFR 180 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 EYY L + LF G G P ++ + G+ T H+LRH++AT Sbjct: 181 EYY------LQYRPKNYLFCGRNGDKYAPESLRKVFKMAVFKAGINKQITLHSLRHAYAT 234 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 HL+ G D+R I+ +LGH + TT IYT+V K Sbjct: 235 HLMDRGTDVRIIKELLGHSSIKTTLIYTHVTQK 267 >gi|298249757|ref|ZP_06973561.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297547761|gb|EFH81628.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 297 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 56/167 (33%), Positives = 88/167 (52%), Gaps = 17/167 (10%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGDKIRIVPLLPSVRKA 209 + RN A L L+Y GLR+SE +SL +NI +S TL + GKG++ R VP+ PS Sbjct: 128 NPRNHATLRLMYHAGLRVSEIVSLKWENIHKTKSGGATLDVWGKGEEQRYVPISPS---- 183 Query: 210 ILEYYDLCPFDLNLNIQLPL------FRGIRGK----PLNPGVFQRYIRQLRRYLGLPLS 259 +LE + P L L + + F+G + K PL+ R +++ + +G+ + Sbjct: 184 MLEELEALPGRLPLLTRSTVGNDRYVFQGRKSKGGSIPLDTRHVHRIVQEAAKRVGIEDN 243 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 + H RH+ A+H L NG + +Q LGH L+TT Y +V + G Sbjct: 244 VSPHWFRHANASHSLDNGAPISVVQQSLGHKSLATTMKYLHVKADTG 290 >gi|327474308|gb|EGF19715.1| integrase/recombinase XerD [Streptococcus sanguinis SK408] Length = 298 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 81/287 (28%), Positives = 132/287 (45%), Gaps = 24/287 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L + + LS T+++Y+ D QF Y + Y + ++I + Sbjct: 9 YLDFCKTHKRLSSHTIRAYKNDLMQF------YNSD-----------YDNVESYIEQLTQ 51 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALN----EKQAL 135 I +L+R ++ +K F YLK + I E+ +R + LP+ + + + Sbjct: 52 SNIKTNTLRRKIACMKVFYNYLKYQNIIEENPFNQLRFQFRTEKVLPKTIPYDILKSIFI 111 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L V++ + K RN I+ LL G+RISE + ++I TL+I GKG Sbjct: 112 YLEQKVIVSKTDYQKQHAERNLLIISLLLSTGIRISELCHIHLKDINLSNKTLQIIGKGK 171 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 K RI+ L +LE Y + + + P + KPL+ + I+++ Sbjct: 172 KERILFLGDQTTFNLLETYINKTRNESNDFLFPGKHSL--KPLSEQSVRLVIKRIVEQNN 229 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + T H RHSFAT LL + D+R IQ ILGH +S TQIYT+V+ Sbjct: 230 FSRTITPHMFRHSFATMLLDSDVDIRYIQQILGHSSISITQIYTHVS 276 >gi|255010477|ref|ZP_05282603.1| site-specific recombinase, phage integrase family protein [Bacteroides fragilis 3_1_12] Length = 537 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 72/265 (27%), Positives = 130/265 (49%), Gaps = 19/265 (7%) Query: 53 YTEEKITIQTIRQLSYTEIRA-----FISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRK 106 Y++ K +QT++ S +I +I KR + R++ +++ ++ F KY +++ Sbjct: 267 YSQLKTMMQTLKVDSLEDITPSILDNYICKRHDEDGCNRRTIAATVTILRGFFKYAEEKG 326 Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVD-NV---LLHTSHETKWIDARNSAILYL 162 + + +++ PR + + V N+ +L + +T I R+ AIL L Sbjct: 327 LCNPGLVYSLKA-------PRVYAHENLPSFVPYNIVQQILQSKKDTAGIGVRDYAILLL 379 Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221 L GLR SE ++ ++I TL ++ K + +++PLLP V AI+ Y F+ Sbjct: 380 LSVYGLRCSEVTNMKLKDIDWRNETLYLRRAKNCRPQVLPLLPIVGNAIVRYIKEVRFNK 439 Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-HTLRHSFATHLLSNGGDL 280 + L L + + L+ +++ + GL L H+LRH+ ATHL++ G L Sbjct: 440 SKKEYLFLCKRAPHEQLSTSTIYNLVKKELKDKGLELRHYGPHSLRHTCATHLINTGHSL 499 Query: 281 RSIQSILGHFRLSTTQIYTNVNSKN 305 + I +LGH L TT+IY V+ KN Sbjct: 500 KEIADLLGHVGLDTTRIYAKVDIKN 524 >gi|158321643|ref|YP_001514150.1| integrase family protein [Alkaliphilus oremlandii OhILAs] gi|158141842|gb|ABW20154.1| integrase family protein [Alkaliphilus oremlandii OhILAs] Length = 286 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 80/287 (27%), Positives = 143/287 (49%), Gaps = 26/287 (9%) Query: 19 QNWLQNLE-IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ-TIRQLSYTEIRAFIS 76 +N+L+ LE I+R SK T++ Y+ + F FL E+K + + Q+S ++ ++ Sbjct: 8 ENFLRYLESIDR--SKETIKGYKKELGYFGRFL----EKKYGFEKEMEQISSVDLEDYMY 61 Query: 77 --KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 K+ +K RS R + +S KY KR++ T++ + + ++K + L+E++ Sbjct: 62 YLKKSGKKSATRS--RVVYIFRSLYKYSYKRELCTKNLAIFLESVKVKQTERDYLSEEEF 119 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGK 193 + L+ + + + A I Y GLR+SEAL+LT +N+ +D++ I GK Sbjct: 120 ILLIQKI------NSSIVKAAVQTIFY----TGLRVSEALNLTMENVKLDEKIIYTISGK 169 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 GDK RI+P+ + + +Y D+ N F + L+P R + + Sbjct: 170 GDKDRIIPISNKLYYILDDYVKNIRPDVESN---KFFCTKKTGSLSPQYINRMLHIAKDS 226 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 L + +AH LRHSFA++L+ L ++Q +LGH L T Y + Sbjct: 227 LNWEKNISAHILRHSFASNLILQNAPLPAVQKLLGHSDLRVTSRYIH 273 >gi|224540989|ref|ZP_03681528.1| hypothetical protein CATMIT_00140 [Catenibacterium mitsuokai DSM 15897] gi|224526088|gb|EEF95193.1| hypothetical protein CATMIT_00140 [Catenibacterium mitsuokai DSM 15897] Length = 335 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 79/290 (27%), Positives = 137/290 (47%), Gaps = 17/290 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L + R SK T+ SY+ + F++FL + I + Q++ I FI + Sbjct: 18 LPLHRNCSKNTISSYKDSLKLFILFLRDHKSMNINKFKMHQINRELILEFIEWLENRGNS 77 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTES---NILNMRNLKKSNSLPRALNEKQALTLVDNV 141 ++ L+GIKSF+ + + + + +L++++LK + L E+Q L++ Sbjct: 78 PVTINHRLAGIKSFINFAQYESVENLAYLQTVLSVKSLKTTTRQVDYLTEEQMNNLINLP 137 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIV 200 TS R+ I+ LLY G R+ E L ++I + + T+++ GKG KIRIV Sbjct: 138 PTDTS-----TGIRHRIIMCLLYDTGARVQELCDLKIEDINLGNNPTVKLHGKGSKIRIV 192 Query: 201 PLLPSVRKAILEYYDLCPF-DLNLNIQLPLFRGIRGKPLNPG----VFQRYIRQLRRY-L 254 P+ ++ + ILE Y F D+ L + L + + ++ + Q+Y L+ Sbjct: 193 PISKNMNQ-ILEVYISKFFSDIKLKNEY-LIKNKNNQQMSRDGIEYIVQKYATILKNNDP 250 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 P H RHS A H+L+ + I+ LGH +STT IY +S+ Sbjct: 251 SFPSKVHPHMFRHSKAMHMLAVDIPIVYIRDFLGHEDISTTMIYARADSR 300 >gi|332884956|gb|EGK05210.1| hypothetical protein HMPREF9456_02974 [Dysgonomonas mossii DSM 22836] Length = 342 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 90/340 (26%), Positives = 152/340 (44%), Gaps = 43/340 (12%) Query: 15 LKERQNWLQN--------LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66 +KER ++ + L ER +S T++SY QF++++ K+ +++ Sbjct: 1 MKERTDFAKQISRFLTTYLPYERSVSNNTIKSYSETFTQFVMYMRDCKSVKVEKLSLKHF 60 Query: 67 SYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRK---ITTESNILNMRNLKKS 122 + I F+S ++ G+ + LS SF KYL+ ++ I I+++ LK Sbjct: 61 TKDNILGFLSWIISSRNCGNATRNYRLSAFCSFAKYLQYKEVGGIEVWQAIMSIPKLKTG 120 Query: 123 NSLPRALNEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 L+ VD V LL + R+ A+L L+ G R+ E L P + Sbjct: 121 EKPVEYLS-------VDAVKLLLAQPDVSTCRGRRDLALLSLMCDTGARVQEICDLIPMS 173 Query: 181 --IMDDQSTLRIQGKGDKIRIVPLL----PSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234 I + ++ + GKG + R +PLL S+R + E + P L Q PLF R Sbjct: 174 LRIESEPFSVYVIGKGKRGRTIPLLKEQVESLRIYMKENFLFSPEKL----QHPLFYNCR 229 Query: 235 GKPLNPG----VFQRYIRQLRR-----YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285 + L + +Y+ + R+ + G + HTLRH+ A HLL G L I+ Sbjct: 230 HEKLTRAGVTYILDKYVDKARKENPAFFTG---HISCHTLRHTKAMHLLQAGVILHHIRD 286 Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKD 325 ILGH + TT+IY +SK + + Y + P+I ++ Sbjct: 287 ILGHSSVMTTEIYARSDSKQKREAIERAYLRLSPNIESEN 326 >gi|282856363|ref|ZP_06265642.1| tyrosine recombinase XerD [Pyramidobacter piscolens W5455] gi|282585734|gb|EFB91023.1| tyrosine recombinase XerD [Pyramidobacter piscolens W5455] Length = 297 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 77/304 (25%), Positives = 135/304 (44%), Gaps = 37/304 (12%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 +ERG SK T ++Y R ++ + + + Q + + FI + Q Sbjct: 18 LERGHSKNTAETYR---RGLELWRGYCEAAGLDPLDVAQEALS---TFIHALKGQGRAGS 71 Query: 87 SLKRSLSGIKSFLKYL---KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 S++ ++G++S++K+ + T +L K+ LP+ L E + +L Sbjct: 72 SIQLIVAGLRSWVKFRVLNGDLPMNTWIPVLPA----KAKKLPKILTEGEI-----QRIL 122 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 + + D R+ L L CG+R SE L ++ D L + GKG K R +P Sbjct: 123 NACDGPGYYDCRDRTALETLANCGVRASELCGLKVGSLNLDDKNLIVFGKGSKERQIPFA 182 Query: 204 PSVRKAI-------LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +++ LE+ D + LF R +PL+ R +++ + + Sbjct: 183 EDLKRQFQIYLQKRLEFLD------GDETEKMLFLSSRREPLSRVDLWRIVQKRGKMASV 236 Query: 257 PLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 P H LRHS ATHLL G DLR++Q LGH ++TT+ Y + + + + ++YD Sbjct: 237 PEERLFPHVLRHSIATHLLRRGMDLRTLQEFLGHSSIATTEKYLHFDLE-----LRDVYD 291 Query: 316 QTHP 319 + HP Sbjct: 292 RAHP 295 >gi|14010726|ref|NP_114212.1| hypothetical protein pFKN_p22 [Pseudomonas syringae pv. maculicola str. M6] gi|13926143|gb|AAK49554.1|AF359557_19 unknown [Pseudomonas syringae pv. maculicola str. M6] Length = 320 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 76/289 (26%), Positives = 131/289 (45%), Gaps = 28/289 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W NL+ R T ++Y+ D F F+ + ++ R ++ + + A+ ++ Sbjct: 32 WFANLDNPR-----TRRAYQNDLEDFCSFVGLASADEF-----RVVTRSHVLAWRAQLEH 81 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVD 139 + + +++R L+ + S +L E+N + N PR NE + L D Sbjct: 82 RGLAGATIRRKLAALASLFDHL------LENNAIAGGNPVHGVKRPRIESNEGKTPALGD 135 Query: 140 N---VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194 + LL ET R+ A+L +L GLR EA L +I + + L++ GKG Sbjct: 136 HQAKALLEAPDETTLKGQRDRALLAVLLYHGLRREEAALLQVSDIQERRGIQHLKVHGKG 195 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL---- 250 K+R +PL P I +Y + L ++PLF +RGK G+ I + Sbjct: 196 GKVRYLPLHPIAAGRIHQYLENSEHHL-AERKVPLFMPLRGKLTGAGITANGIYAVVTAY 254 Query: 251 RRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + G+ + H LR + AT+ L + D+ +Q+ LGH +STT+IY Sbjct: 255 AKKAGIEVDGLGVHGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303 >gi|325661290|ref|ZP_08149916.1| hypothetical protein HMPREF0490_00649 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472239|gb|EGC75451.1| hypothetical protein HMPREF0490_00649 [Lachnospiraceae bacterium 4_1_37FAA] Length = 302 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 69/279 (24%), Positives = 131/279 (46%), Gaps = 24/279 (8%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 R LS+ T++ Y + +F F+ +++ I + ++ I A+I+ + + Sbjct: 17 RRLSEKTIKGYRNNNLRFFTFI----KKEYDIDDLGKIQGNVINAYIAYLTSIGRKPSYI 72 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 + ++F KY + K + + + + K+ +L + N+K+ +V Sbjct: 73 NGIIKSFRAFYKYCENEKYVSRNPMNKVNFQKQGKTLIKTFNDKEVRDMV-----RYYGS 127 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 +++D R+ I+ +L G+R SE L +I D + I+GKG+K R+VP+ P + K Sbjct: 128 VRYLDIRDKLIMVMLLDTGIRNSELCGLLISDIRYDH--ILIRGKGNKERVVPISPILNK 185 Query: 209 AILEYYDLCPFDLNLNIQLP-------LFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLS 259 +++Y + NL I+ LF +GK L P +R + + + + Sbjct: 186 ILIKYKRV----RNLYIKDKFAYQIEYLFLSQKGKKLTPETVERVVLECAEACKVRKTIR 241 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + HT RH FA L NG DL ++ +LGH ++ T+IY Sbjct: 242 CSPHTCRHYFAQAQLKNGCDLYTLSRLLGHSNINITKIY 280 >gi|148243976|ref|YP_001220215.1| phage integrase family protein [Acidiphilium cryptum JF-5] gi|146400539|gb|ABQ29073.1| phage integrase family protein [Acidiphilium cryptum JF-5] Length = 302 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 85/153 (55%), Gaps = 2/153 (1%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEY 213 ++ A L + YG G+R++E +L +I ++ +R++ GKG + R L + + E+ Sbjct: 127 KHQAALSVAYGAGMRVAEVAALKVSDIDSERMLIRVERGKGGRYRNAILPADLLILLREW 186 Query: 214 YDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 + + ++ Q LF G + KP++ R + + R + HTLRHSFATH Sbjct: 187 WKIGHQQGVMHAQGWLFPGQQVTKPISTRQLHRVVVEAARAAEITKRVGPHTLRHSFATH 246 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 LL +G D+R IQ++LGH L+TT +YT V ++ Sbjct: 247 LLEDGVDIRVIQALLGHSHLNTTALYTKVATRT 279 >gi|325479493|gb|EGC82589.1| phage integrase, N-terminal SAM domain protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 329 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 84/325 (25%), Positives = 151/325 (46%), Gaps = 36/325 (11%) Query: 6 LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF------------- 52 + EI+ L+ + N+L+++ RGLS T++ Y D + F+ Sbjct: 1 MKEIIQPILITDYLNYLKSI---RGLSSNTIKEYSYDLNLLIRFMIVRKIYYGNIVKFNK 57 Query: 53 -YTEEKIT-------IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK 104 + +++I +T+ + +++ + RS R +S IKSF KYL Sbjct: 58 EFNDDEINSIINPSFFETLTLQDFYSYLSYLDNEKNDTASTRS--RKISAIKSFYKYLYS 115 Query: 105 RKITTESNILN-MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163 SN+ + N K S P L + L+D + + + ++ +R+ AI++ Sbjct: 116 EIEVINSNVSEKLTNPKISQRQPVYLTLTETERLLDTI---NNEKNDFLRSRDLAIVFTF 172 Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLN 222 G+R+SE +S+ +I++D I GKG+K R V L + + I Y + + + Sbjct: 173 LTTGMRLSELVSIDITDIVNDH--FNIIGKGNKERTVYLTDNCLQLIYSYILVRAKYIGD 230 Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG-DL 280 +I LF R K ++ Q I + + G S + H LRH+ AT + G D+ Sbjct: 231 KDID-ALFISTRKKRISNRAVQSTIDKYLKKAGFDTSIYSTHKLRHTAATLMYKYGNVDI 289 Query: 281 RSIQSILGHFRLSTTQIYTNVNSKN 305 R+++ ILGH +STTQIYT+++ + Sbjct: 290 RALKDILGHSNVSTTQIYTHLDDDD 314 >gi|298250455|ref|ZP_06974259.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297548459|gb|EFH82326.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 350 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 79/302 (26%), Positives = 142/302 (47%), Gaps = 32/302 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL+ L+ ++ T++ Y FL++ + +T T+ ++ R + +RT Sbjct: 15 WLEELQAN-DRARGTIRRYRSAVEGFLVWYECCEQRSLTFATLTPITLVGYRNDL--QRT 71 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVD 139 Q+ ++ +S +++F +L + + +++ + + R L++ Q Sbjct: 72 QRRATSTVNGQISALRAFCAWLTEEHYLETNPARHLKLVGRQEVSSREGLDDAQV----- 126 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDK 196 N LL + ++ RN AI+ +L G+R+ E LT +I + + R+ QGKG+K Sbjct: 127 NALLRQARTSR-DPLRNYAIVQVLLQTGIRLDECSQLTLDDIELGERSGRVTIRQGKGNK 185 Query: 197 IRIVPLLPSVRKAILEYYDL---C-----------PFDLNLNIQLPLFRGIRGKPLNPGV 242 +VPL SVR+A+ EY C P + + +PL+ + L Sbjct: 186 ACMVPLNASVRQALAEYMASRLNCDPTVKAVARHWPAYSSDSPTIPLWLSQKKGILTTSA 245 Query: 243 FQRYIRQLRRYLG----LPLSTTAHTLRHSFA-THLLSNGGDLRSIQSILGHFRLSTTQI 297 ++ I L R +P T+AHTLRH+FA +L + GDL + S+LGH L TT+I Sbjct: 246 MRQMIDVLVRDTATRGLVPAQTSAHTLRHTFARNYLAEHPGDLVGLASLLGHTSLDTTRI 305 Query: 298 YT 299 Y+ Sbjct: 306 YS 307 >gi|281422020|ref|ZP_06253019.1| putative integrase/recombinase XerD [Prevotella copri DSM 18205] gi|281403809|gb|EFB34489.1| putative integrase/recombinase XerD [Prevotella copri DSM 18205] Length = 298 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 64/217 (29%), Positives = 106/217 (48%), Gaps = 22/217 (10%) Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 K + G++++ K + + + + L + ++K LPR L+++Q L+ N L+ Sbjct: 81 FKHMIFGLQAYYKVMGLK----QPDGLVLPPVRKPKRLPRVLSQEQIARLLRNCSLY--- 133 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206 + +L ++Y C LR+ EA L +I D+ L + QGKG K R VP+ + Sbjct: 134 --------DKTLLAIIYDCALRVGEACRLRWDDICFDRKKLFVFQGKGRKDRYVPISDQM 185 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKP--LNPGVFQRYIRQLRRYLGLPLSTTAHT 264 + Y P D + G + +P + PG + ++ + L S T H Sbjct: 186 LVVLKAYRKKYPSDDYVFKS----HGSKTEPQRITPGYVRIILKNALARVVLDHSITIHD 241 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 LRHS ATHLL NG ++ +Q LGH RL+TT +Y +V Sbjct: 242 LRHSAATHLLENGENIVHVQKRLGHARLTTTMVYLHV 278 >gi|303240629|ref|ZP_07327144.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302591866|gb|EFL61599.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 279 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 74/244 (30%), Positives = 115/244 (47%), Gaps = 23/244 (9%) Query: 66 LSYTEIRAFISKRRTQKIGDRSLKRSL-SGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 L EI+A++ ++ +R + RS + S LK+L + + E + K+ Sbjct: 43 LGEEEIKAYLH----HQLIERKMSRSYNTQAYSALKFLYETTLKREWKSYKIPRCKREKK 98 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 LP+ L+ ++ + + NV + H AIL Y GLR+SE ++L +I Sbjct: 99 LPKVLS-REEVKRIFNVTTNPKHR---------AILMTTYSSGLRVSEVVNLKVNDIDGK 148 Query: 185 QSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGV 242 + L +QG KG K R L + + +Y+ L + + LF G +PL Sbjct: 149 RLQLFVQGGKGQKDRYTVLSRKNLELLRDYWKL------YHPKTWLFPGQDINEPLCVRT 202 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 Q+ R G+ + HTLRHSFATHLL +G D IQ +LGH L TT IY +V Sbjct: 203 VQKVFENSVRKAGITKDVSVHTLRHSFATHLLESGVDTFYIQKLLGHSSLKTTSIYIHVG 262 Query: 303 SKNG 306 + +G Sbjct: 263 NLDG 266 >gi|295116103|emb|CBL36950.1| Site-specific recombinase XerD [butyrate-producing bacterium SM4/1] Length = 289 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 71/267 (26%), Positives = 118/267 (44%), Gaps = 34/267 (12%) Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM-RNLKKSNSLPRAL 129 + FI + + + +++ + +K +L YL +R I+ E M R+ K+ R L Sbjct: 4 LSVFIEMLQAKNLAPNTIRGYQTYLKPYLSYLLERNISPEHASWEMVRDFLKTLQTSRHL 63 Query: 130 NEKQALTLVDNV------LLHTSHETK------------WIDARNSAILYL--------- 162 +++ ++ ++ +LH + ++ RN L+L Sbjct: 64 SDRTMNMVISHLQFFWIYVLHQPWDPSQIPFRKFRTYLPFVPDRNQVALFLNSLDDPKAR 123 Query: 163 -----LYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDL 216 LY GLR+ E L + I L I K R VP+ S+ + I EY+ Sbjct: 124 LACSILYAAGLRLDELCHLECRYIFLSSHRLYIPVSKNRSDRYVPIPESICRDIREYWYS 183 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 CP + L + R +P++ QR I R LG+ AH+LRH++ATH N Sbjct: 184 CPAHMKPKTWLFTQQTNRSRPMDKQWLQRIILDRRNALGMDSRFCAHSLRHAYATHSYEN 243 Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNS 303 G DL S++S LGH L++T IY ++ S Sbjct: 244 GLDLLSLKSRLGHRSLNSTAIYVHLAS 270 >gi|295090287|emb|CBK76394.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum K10] Length = 289 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 71/267 (26%), Positives = 118/267 (44%), Gaps = 34/267 (12%) Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM-RNLKKSNSLPRAL 129 + FI + + + +++ + +K +L YL +R I+ E M R+ K+ R L Sbjct: 4 LSVFIEMLQAKNLAPNTIRGYQTYLKPYLSYLLERNISPEHASWEMVRDFLKTLQTSRHL 63 Query: 130 NEKQALTLVDNV------LLHTSHETK------------WIDARNSAILYL--------- 162 +++ ++ ++ +LH + ++ RN L+L Sbjct: 64 SDRTMNMVISHLQFFWIYVLHQPWDPSQIPFRKFRTYLPFVPDRNQVALFLNSLDDPKAR 123 Query: 163 -----LYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDL 216 LY GLR+ E L + I L I K R VP+ S+ + I EY+ Sbjct: 124 LACSILYAAGLRLDELCHLECRYIFLSSHRLYIPVSKNRSDRYVPIPESICRDIREYWYS 183 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 CP + L + R +P++ QR I R LG+ AH+LRH++ATH N Sbjct: 184 CPAHMKPKTWLFTQQTNRSRPMDKQWLQRIILDHRNALGMDSRFCAHSLRHAYATHSYEN 243 Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNS 303 G DL S++S LGH L++T IY ++ S Sbjct: 244 GLDLLSLKSRLGHRSLNSTAIYVHLAS 270 >gi|160942095|ref|ZP_02089410.1| hypothetical protein CLOBOL_06983 [Clostridium bolteae ATCC BAA-613] gi|158434986|gb|EDP12753.1| hypothetical protein CLOBOL_06983 [Clostridium bolteae ATCC BAA-613] Length = 218 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/219 (29%), Positives = 108/219 (49%), Gaps = 15/219 (6%) Query: 95 IKSFLKYL-KKRKITTE-SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152 +K+F ++ K+ +I + + +L ++K + ++NE AL +D + TS E Sbjct: 1 MKAFFNFMFKEGRIRKDPAELLKAPKIEKKAPVILSVNEVNAL--LDQPGMTTSKEI--- 55 Query: 153 DARNSAILYLLYGCGLRISE--ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210 R+ A+L LLY G+R+SE L L+ N+ T R G K R+VP ++A+ Sbjct: 56 --RDKAMLELLYATGIRVSELIGLELSDLNMQVGYITCR---DGQKERMVPFGKPAKQAL 110 Query: 211 LEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 Y + L + LF GK ++ F + I+ G+ T HTLRHSF Sbjct: 111 SVYLEKGRSQLLKGKESQWLFTNCSGKAMSRQGFWKIIKYYGEKAGIQADITPHTLRHSF 170 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 A HL+ G D+ ++Q++LGH +TT +Y + G+ Sbjct: 171 AAHLIRGGADIHAVQAMLGHSDSTTTHMYAAYSGNTVGE 209 >gi|119945130|ref|YP_942810.1| integron integrase [Psychromonas ingrahamii 37] gi|119863734|gb|ABM03211.1| integron integrase [Psychromonas ingrahamii 37] Length = 324 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 66/182 (36%), Positives = 86/182 (47%), Gaps = 44/182 (24%) Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILE------- 212 YLLYG GLR+ EA++L Q+I D ++ I QGKG K R V L P + +++ Sbjct: 127 YLLYGSGLRLMEAVNLRIQDINFDYLSINIWQGKGGKHRSVTLAPELIESLQNQITKVNL 186 Query: 213 YY--DLCPFDLNLNIQLPLFRGIRGKPLN-------------------PGV--------- 242 YY D+ D + LP + GK N PG Sbjct: 187 YYQQDMQRTDYQ-GVYLP--HALAGKYPNAAKELKWHYLFPSTQLSFEPGTTNLRRHHMH 243 Query: 243 ---FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 Q+ ++ R L T HTLRHSFATHLL G D+R++Q LGH L TTQIYT Sbjct: 244 ESNIQKAVKNAARTLDFKKQVTCHTLRHSFATHLLQRGTDIRTVQEQLGHTDLRTTQIYT 303 Query: 300 NV 301 +V Sbjct: 304 HV 305 >gi|157362896|ref|YP_001469663.1| phage integrase family protein [Thermotoga lettingae TMO] gi|157313500|gb|ABV32599.1| phage integrase family protein [Thermotoga lettingae TMO] Length = 276 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 77/273 (28%), Positives = 131/273 (47%), Gaps = 32/273 (11%) Query: 31 LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90 LS +T+++Y R+F Q+I +L+ EI + T G + Sbjct: 20 LSSMTVRAYMSAVRKF-------------TQSIEELNVEEILKWAE---TTAEGRKPSTV 63 Query: 91 SL--SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 +L I+ FL+ + + N L ++ +S+++P+AL+E++ L L + + Sbjct: 64 NLYYCAIRRFLEEVSPEILLDLRNKLKVKG--RSSTIPKALSEREFLKLWNKAVKIFDE- 120 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 D R I+ L GLR+SE SL +I + + + GKG K+RIVP+ PS K Sbjct: 121 ----DYRQLLIVGLAGYAGLRVSEIRSLKVGHINLREDHILVNGKGRKMRIVPI-PSKLK 175 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 + + + P L + PL + + GKP+ ++ L + G+ + H LRH+ Sbjct: 176 PYI--FKIVP---KLKEEEPLLKNLSGKPITSHGISYLLKNLAKKTGIK-HISPHVLRHT 229 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 AT+LL G +L+ +Q LGH L+TT+ Y V Sbjct: 230 AATNLLKKGVNLKIVQEFLGHSSLATTERYLRV 262 >gi|153954207|ref|YP_001394972.1| site-specific tyrosine recombinase XerC [Clostridium kluyveri DSM 555] gi|146347088|gb|EDK33624.1| Predicted recombinase [Clostridium kluyveri DSM 555] Length = 328 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 100/326 (30%), Positives = 153/326 (46%), Gaps = 43/326 (13%) Query: 5 NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-EKITIQ-- 61 +L +I + EL ++L L +G SK TL+ Y+ D FL FL Y EK Q Sbjct: 4 SLNQIYNPELPGYLNDFLNYLGTIKGKSKNTLEGYKVDLTMFLRFLKLYKGLEKEGSQFE 63 Query: 62 ----------TIRQLSYTEIRAFIS---KRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKI 107 I+Q++ +++ AFIS R K R+ R ++ +KSF KYL K K+ Sbjct: 64 KIKIKDIDIDIIKQITLSDLFAFISFIENYRHNKSYARA--RKVASLKSFFKYLCSKAKL 121 Query: 108 TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA----RNSAILYLL 163 +E+ L + + + S P + L + + ID R+ I+ Sbjct: 122 ISENPALELESPQISKRNP-----------IYLSLKESKLLLESIDGKFKERDYCIITFF 170 Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223 CG+R+SE S+ NI +D TL + GKG+K R + L S +A+ Y L D L Sbjct: 171 LNCGMRLSELCSINISNIKED--TLTVIGKGNKERTIYLNKSCLEALKNY--LTSRDEYL 226 Query: 224 NI---QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG- 278 N + LF +N + +++ + L T H LRH+ AT + G Sbjct: 227 NKIKDKDALFISKNYARINKRSVEIMLKKYLKKANLDSEKYTPHKLRHTAATLMYKYGHV 286 Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSK 304 D+RS+Q ILGH +STTQIYT+V+ + Sbjct: 287 DIRSLQKILGHENVSTTQIYTHVDDE 312 >gi|259909812|ref|YP_002650168.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|224965434|emb|CAX56966.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96] Length = 351 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 86/319 (26%), Positives = 141/319 (44%), Gaps = 25/319 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++WL +L + G S T+Q Y R FL + E I Q+S + A+ Sbjct: 26 ESWLAHLVVA-GRSPRTVQGYRERVRAFLAWC-----EPRGITYAPQVSLAVLEAYQRWL 79 Query: 79 RTQKIGD------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNE 131 + + D S L+ I+ ++L +R + + + K+ LP + +E Sbjct: 80 QGYRRADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPAQVFSE 139 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 + ++ ++ T RN AIL LL+ G+R SE L ++ + + ++ Sbjct: 140 AETRRVLQSLDAGTP-----PGLRNRAILELLWSSGIRRSELAGLLLSDVDFTRGVVNVR 194 Query: 192 -GKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-R 248 GKG K R+VP+ + + Y D+ P LF +G L G R Sbjct: 195 RGKGGKDRVVPVGHTALMWLGRYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGR 254 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 +R L + H RHS AT +L NG D R IQ+ILGH +L TTQIYT V + Sbjct: 255 AIREGAHLKKAGACHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGH--- 311 Query: 309 WMMEIYDQTHPSITQKDKK 327 + +++ THP+ ++ +K Sbjct: 312 -LQKVHAHTHPAEKRRTEK 329 >gi|90578175|ref|ZP_01233986.1| hypothetical protein VAS14_14029 [Vibrio angustum S14] gi|90441261|gb|EAS66441.1| hypothetical protein VAS14_14029 [Vibrio angustum S14] Length = 296 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 66/216 (30%), Positives = 103/216 (47%), Gaps = 18/216 (8%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 ++K + +G++ F K++ +R + LN+ +LP L + L++ Sbjct: 71 TVKINRNGLQFFFKHVLQR----DWEWLNIVKPPHVKTLPDILTPTEVSLLINAT----- 121 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS 205 R LY GLR+ E L+LT NI + + I QGKG K R +PL P Sbjct: 122 -----SQLRYQVFFLTLYSLGLRLGEGLNLTVGNIDSHRMLVHIRQGKGGKDRFIPL-PR 175 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 L YY N + P + ++ G Q+ ++ + + G+ S + H L Sbjct: 176 RTLYALRYY--WQTHKNSHYLFPSQFNVNHTVMDRGGVQKAMKAVIKSCGITKSISPHNL 233 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 RHS+ATHLL G DLRS+Q +LGH L+TT YT++ Sbjct: 234 RHSYATHLLERGLDLRSVQHLLGHNSLNTTAKYTHL 269 >gi|71725244|ref|YP_272203.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558834|gb|AAZ38044.1| site-specific recombinase, phage integrase family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 320 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 76/289 (26%), Positives = 129/289 (44%), Gaps = 28/289 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W NL+ R T ++Y+ D F F+ + + RQ++ + + A+ + Sbjct: 32 WFANLDNRR-----TRRAYQNDLTDFSSFIGLASADDF-----RQVTRSHVLAWRADLEQ 81 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVD 139 + + +++R L+ + S +L ++N + N PR NE + L D Sbjct: 82 RGLAGATIRRKLAALASLFDHL------LDNNAVAGGNPVHGVKRPRIESNEGKTPALGD 135 Query: 140 N---VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194 + LL E+ R+ A+L +L GLR EA L +I + + L+I GKG Sbjct: 136 HQAKALLEAPDESTLKGRRDRAMLAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKG 195 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV----FQRYIRQL 250 K+R +PL P I Y + L + ++PLF +RGK GV + Sbjct: 196 GKVRYLPLHPVAAGRIHLYLERSEHHL-ADRKVPLFISLRGKSTGAGVSANGIYTVVEAY 254 Query: 251 RRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + G+ ++ H LR + AT+ L + D+ +Q LGH +STT+IY Sbjct: 255 AKKAGIEVAGLGVHGLRATAATNALEHEADIAKVQVWLGHANISTTRIY 303 >gi|149198666|ref|ZP_01875710.1| Integron integrase [Lentisphaera araneosa HTCC2155] gi|149138381|gb|EDM26790.1| Integron integrase [Lentisphaera araneosa HTCC2155] Length = 425 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/184 (33%), Positives = 89/184 (48%), Gaps = 37/184 (20%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRK-------AI 210 ++ L+YG GLR SEA L +++ + L I+ GKGDK R VPL S+ + I Sbjct: 221 MVRLIYGGGLRHSEAYRLRIKDVDTARMCLTIRSGKGDKDREVPLGDSLLEDLKNHLAQI 280 Query: 211 LEYYDLCPFDLNLNIQLP------------------LFRG-----------IRGKPLNPG 241 + YD+ + LP LF +R + PG Sbjct: 281 RKLYDVDRAEEVAGCYLPNALERKSVNKGKEWAWFWLFPASTLSIDPRADVLRRHHVAPG 340 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + + G+ S T HTLRHSFATH+L +G D+R++Q I+GH ++TTQIYT+V Sbjct: 341 YLSNHYKNAIEKAGISKSATVHTLRHSFATHVLEDGYDIRTLQEIMGHNDVNTTQIYTHV 400 Query: 302 NSKN 305 K+ Sbjct: 401 MGKH 404 >gi|299820311|gb|ADJ54321.1| integrase [archaeon enrichment culture clone 1(2010)] Length = 282 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 85/302 (28%), Positives = 147/302 (48%), Gaps = 51/302 (16%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF--YTEEKITIQTIRQLSYTE 70 EL + +L +L+ RG S+ TL++Y +F+ +LA T +++T Q + Sbjct: 4 ELTSNLEGYLGSLK-ARGRSERTLKTYRSILTRFIDYLAVNGLTPDRVTEQ--------D 54 Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 I F+ + SL ++SFLKYL + +N K+ LP+ L Sbjct: 55 IDRFMLELSKMGWDQNSLFTVAVAVRSFLKYLGRN--------VNYPLPKRPKMLPKYLT 106 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 ++ L+ D I+ LL G+R+SE +++ +I D+ ++R+ Sbjct: 107 REELTRLLGACQ----------DDYEKLIIGLLL-TGVRVSELVNIRVSDIDIDKRSIRV 155 Query: 191 QGKGDKIRIV-------PLLPS-VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242 GKG K R+V PLL +R+ E+ L P ++N + + ++ Sbjct: 156 VGKGYKERVVFFADWLVPLLKRYLRQNKSEW--LFPSEINPD-----------QHVHYVT 202 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 +R ++++ + G+ T HTLRH+FAT L++G D+R IQ +LGH LS+TQIYT+V+ Sbjct: 203 VERILKKIVKRAGINKKVTPHTLRHTFATLSLASGLDIREIQELLGHSSLSSTQIYTHVD 262 Query: 303 SK 304 + Sbjct: 263 PQ 264 >gi|32474798|ref|NP_867792.1| integrase/recombinase Y4QK [Rhodopirellula baltica SH 1] gi|32445338|emb|CAD75339.1| putative integrase/recombinase Y4QK [Rhodopirellula baltica SH 1] Length = 461 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 92/187 (49%), Gaps = 22/187 (11%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 +KS LP +++K+ +++ R+ +L +LY GLR++E L Sbjct: 155 RKSKQLPVVMSKKEVQRMMEAAR----------TLRDKLLLTVLYATGLRVAEVARLQWS 204 Query: 180 NIMDDQSTLRIQ-GKGDKIRIV----PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234 + D+ +R+Q GKG K R V LLP +R+ L + P Sbjct: 205 DFDFDRQQIRVQLGKGKKDRYVMLADDLLPLMRQ-------LWRHTKGVGYLFPSEGRRV 257 Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 + L+P QR ++Q R G+ + T H+ RHSFATHL+ +G D+R IQ +LGH L T Sbjct: 258 DRHLSPRTIQRAVKQARILSGIGKAVTPHSFRHSFATHLIESGTDIRFIQKLLGHTNLET 317 Query: 295 TQIYTNV 301 T +YT V Sbjct: 318 TSLYTKV 324 >gi|291524090|emb|CBK89677.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629] Length = 280 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 69/292 (23%), Positives = 130/292 (44%), Gaps = 28/292 (9%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 + +E N +Q+ +R L T+ +Y FL T + I L+ ++ Sbjct: 1 MYEEIFNQIQSAANKRNLKDSTIHAYCTSVAHFL---------NHTAKDIDALTTDDVDI 51 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 F+++++ I + SGI+ F K + K+ + ++ +K+ LP L + + Sbjct: 52 FLTEKKLSGISPETYNHYHSGIRFFYKKILKKNWDDD----DIPRMKRDRKLPTVLTKTE 107 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-G 192 ++D + ++ A++ +Y GLR+SE L +I + T+ I+ G Sbjct: 108 ISAILDATP----------NLKHKAMIATMYSGGLRVSEVTHLHYDDISRTKKTIHIRDG 157 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 K R L + + EY+ C I P G L ++ R+ + Sbjct: 158 KSRSDRYTLLADRTLEILTEYWFQCG--RPRGILFP--SSWTGDYLTKDSVIQFFRESAK 213 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 G+ + H LRHSFA+HL +G D++ IQ++LGH +T++Y +V++K Sbjct: 214 RAGIQKHVSTHCLRHSFASHLFESGCDVKYIQALLGHRDPKSTEVYLHVSNK 265 >gi|149198037|ref|ZP_01875085.1| Integron integrase [Lentisphaera araneosa HTCC2155] gi|149138949|gb|EDM27354.1| Integron integrase [Lentisphaera araneosa HTCC2155] Length = 419 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 79/309 (25%), Positives = 136/309 (44%), Gaps = 63/309 (20%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLS 93 T Q+Y +++L+F+ +LS + F+S +K + + ++ + Sbjct: 119 TEQAYCSWIQRYLVFVKG-----------EELSGENVSRFVSHLAVEKNVASSTQNQAFN 167 Query: 94 GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153 + F +Y+ ++++ S L R ++KS LP L ++ ++ ++ Sbjct: 168 ALVFFFRYVLEKEVGDLSQTL--RAIRKSK-LPLVLTREEVCKIMAK-----------ME 213 Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVR----- 207 ++ L+YG GLR SEA + +++ ++ L ++ GKGDK R VPL S+ Sbjct: 214 GVPLLMVRLIYGGGLRHSEAYRMRVKDVDMERMCLTVKSGKGDKDREVPLGESLVEELHE 273 Query: 208 --KAILEYYD-----------------------------LCPFDLNLNIQLPLFRGIRGK 236 K I E YD F N+ P IR Sbjct: 274 HLKKIREIYDEDRSNGVEGCYLPGALENKYPNAGKEWGWFWLFPANVLSNDPRANKIRRH 333 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + +Q R G+ T HTLRHSFATH+L +G D+R++Q ++GH ++TTQ Sbjct: 334 HVLSSYLSGPYKQALRAAGIAKVATIHTLRHSFATHVLEDGYDIRTLQELMGHNDVNTTQ 393 Query: 297 IYTNVNSKN 305 IYT+V K+ Sbjct: 394 IYTHVMGKH 402 >gi|91790630|ref|YP_551582.1| phage integrase [Polaromonas sp. JS666] gi|91699855|gb|ABE46684.1| phage integrase [Polaromonas sp. JS666] Length = 291 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 81/292 (27%), Positives = 135/292 (46%), Gaps = 32/292 (10%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 RQ L ++ + R L T SY R+ FL + + T++ +R+ + Sbjct: 12 RQRMLDDMRL-RKLEDKTQSSYIRAVRKLAGFLR-RSPDTATVEDLRRFQLHLV------ 63 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 Q +L +++G+K F + +R + M++++ LP L+ ++ L Sbjct: 64 --DQGTSPITLNATITGLKFFFEVTLERA----DLMARMQSVRVPQKLPVVLSPQEVARL 117 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196 + + H+T L + YG GLR SE ++L +I + TLR+ QGKG K Sbjct: 118 I-AATANLKHQTA---------LSVAYGAGLRASEVIALKVGDIDSQRMTLRVEQGKGRK 167 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRG-KPLNPGVFQRYIRQLRR 252 R L P + + + ++ + + LP LF G+ +PL R I + Sbjct: 168 DRYAMLAPVLLQRLRAWWRVGHAQGKM---LPGGWLFPGLDPVQPLTTRQLNRAIHAAAQ 224 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + + HTLRHSFATHLL D+R IQ +LGH +L TT +YT+V ++ Sbjct: 225 DAKIDKRVSMHTLRHSFATHLLEQKVDIRVIQVLLGHKKLETTSMYTHVATE 276 >gi|221067020|ref|ZP_03543125.1| integrase family protein [Comamonas testosteroni KF-1] gi|220712043|gb|EED67411.1| integrase family protein [Comamonas testosteroni KF-1] Length = 322 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 89/316 (28%), Positives = 139/316 (43%), Gaps = 42/316 (13%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI-SKR 78 ++L +L + GL++ TLQ + R F +L ++T ++ S ++ AF+ S R Sbjct: 22 DFLTDLFFQEGLAESTLQVLQIQLRAFNAWLL-----EVTGRSWEHASVKDLNAFLLSWR 76 Query: 79 RTQKIGDRSLKR-SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE-KQALT 136 + + LK+ L + ++ K ++ E +L++R + LP + N Q + Sbjct: 77 DARSVSTLRLKQWMLQRLYAWAKDAGIVDLSVERAMLSLRGGLRRPKLPPSSNAIAQLME 136 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L D T R+ A+L LLYG GLR +E L+LT + ++I GKG K Sbjct: 137 LPDT--------TTAKGMRDRAVLELLYGSGLRAAELLNLTLDQLPSKGKPMQIWGKGSK 188 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF--------QRYIR 248 R+V + R I +Y P L L G G +F RY Sbjct: 189 ERLVVVGDHARHWIAQYKSARP--------LILADGGHGHRSTAKLFVSSGRYPDYRYY- 239 Query: 249 QLRRYLG-----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 QLRR + L T H LRH+FA+HL L +IQ +LGH TT Y ++ Sbjct: 240 QLRRMVSRYGRECGLRLTPHALRHAFASHLYQGKASLHTIQLLLGHECQETTAHYVSIFH 299 Query: 304 KNGGDWMMEIYDQTHP 319 ++ + DQ HP Sbjct: 300 EDS----RALVDQHHP 311 >gi|28871740|ref|NP_794359.1| site-specific recombinase, phage integrase family [Pseudomonas syringae pv. tomato str. DC3000] gi|66044722|ref|YP_234563.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] gi|302185971|ref|ZP_07262644.1| Phage integrase:Phage integrase, N-terminal SAM-like protein [Pseudomonas syringae pv. syringae 642] gi|28854992|gb|AAO58054.1| site-specific recombinase, phage integrase family [Pseudomonas syringae pv. tomato str. DC3000] gi|63255429|gb|AAY36525.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] Length = 320 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 76/289 (26%), Positives = 130/289 (44%), Gaps = 28/289 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W NL+ R T ++Y+ D F F+ + ++ R ++ + + A+ + Sbjct: 32 WFANLDNPR-----TRRAYQNDLEDFCSFIGLASADEF-----RVVTRSHVLAWRAHLEH 81 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVD 139 + + +++R L+ + S +L E+N + N PR NE + L D Sbjct: 82 RGLAGATIRRKLAALASLFDHL------LENNAIAGGNPVHGVKRPRIESNEGKTPALGD 135 Query: 140 N---VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194 + LL ET R+ A+L +L GLR EA L +I + + L++ GKG Sbjct: 136 HQAKALLEAPDETTLKGQRDRALLAVLLYHGLRREEAALLQVSDIQERRGIQHLKVHGKG 195 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL---- 250 K+R +PL P I +Y + L ++PLF +RGK G+ I + Sbjct: 196 GKVRYLPLHPIAAGRIHQYLENSEHHL-AERKVPLFMPLRGKLTGAGITANGIYAVVTAY 254 Query: 251 RRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + G+ + H LR + AT+ L + D+ +Q+ LGH +STT+IY Sbjct: 255 AKKAGIEVDGLGVHGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303 >gi|95931413|ref|ZP_01314121.1| Integron integrase [Desulfuromonas acetoxidans DSM 684] gi|95132531|gb|EAT14222.1| Integron integrase [Desulfuromonas acetoxidans DSM 684] Length = 335 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 76/284 (26%), Positives = 122/284 (42%), Gaps = 52/284 (18%) Query: 61 QTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119 Q + + +EI AF++ +K + + ++LS I +++ R I ++ R Sbjct: 55 QHPKDMGESEINAFLTYLAVKKKVSASTQNQALSAILYLYRHVIGRDIGDLGEVIRARKP 114 Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 K+ LP + ++ ++D + + KW+ A LLYG GLR+ E L L Q Sbjct: 115 KR---LPVVMTREEVKAVLDQL-----NGDKWLMAS------LLYGSGLRLMECLQLRVQ 160 Query: 180 NI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY------------------------- 213 ++ + L GKG K R L S+ A+ E+ Sbjct: 161 DLDFAGRELLVRDGKGGKDRRTMLPQSLVAALQEHLIHVKKIHDKDLNDGCGKVPLPGAL 220 Query: 214 ---YDLCPFDLNLNIQLPL-------FRGIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTA 262 Y P+D P G G+ ++ + QR +R+ G+ Sbjct: 221 DRKYPQAPWDWRWQWVFPQANRWKNKITGEEGRHHVHETILQRAVREAVSRAGVVKRVGC 280 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 HT RH FATHLL G D+R+IQ +LGH ++TT IYT+V +K G Sbjct: 281 HTFRHCFATHLLEAGYDIRTIQELLGHKDVNTTMIYTHVLNKGG 324 >gi|283479897|emb|CAY75813.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163] Length = 351 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 89/318 (27%), Positives = 139/318 (43%), Gaps = 23/318 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI--RAFIS 76 ++WL +L + G S T Q Y + FLA+ IT L+ E R Sbjct: 26 ESWLAHLVVA-GRSARTAQGY---GERVXAFLAWCEPRGITYAPQVSLAVLEAYQRWLQG 81 Query: 77 KRRT---QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNEK 132 RR Q + + L R LS ++ ++L KR S + K+ LP + +E Sbjct: 82 YRRADGKQLVVNSQLHR-LSAVRMLFRWLLKRHHILYSPAEQLELPKEERRLPAQVFSEA 140 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ- 191 + ++ ++ T R AIL LL+ G+R SE L ++ + + ++ Sbjct: 141 ETRRVLQSLDAGTP-----PGLRXRAILELLWSSGIRRSELAGLLLSDVDFTRGVVNVRR 195 Query: 192 GKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQ 249 GKG K R+VP+ + + Y D+ P LF +G L G R Sbjct: 196 GKGGKDRVVPVGHTALMWLXRYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGRA 255 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 +R L + H RH AT +L NG D R IQ+ILGH +L TTQIYT V + Sbjct: 256 IRSGAHLKKAGACHIFRHXMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGH---- 311 Query: 310 MMEIYDQTHPSITQKDKK 327 + +++ THP+ ++ +K Sbjct: 312 LQKVHAHTHPAEKRRTEK 329 >gi|322806579|emb|CBZ04148.1| integrase/recombinase (XerC/CodV family) [Clostridium botulinum H04402 065] Length = 330 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 85/304 (27%), Positives = 149/304 (49%), Gaps = 31/304 (10%) Query: 6 LPE---IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62 LPE +VS ++ ++ Q +L +++ GLS+ TL++YEC+ LIF + TI T Sbjct: 43 LPEETALVSSDIEEKLQIYLATKKLD-GLSRKTLKNYECN---LLIFADHLRKPLSTINT 98 Query: 63 IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122 + ++R F++ R + + S+ +S +KSF +L + + ++ ++ K+ Sbjct: 99 M------DLRMFLT-VRCKSMKATSVNGQISILKSFFGWLHEEEYIPKNPAKKLKQTKEP 151 Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 + + L E++ LL S +T R A++ L G R+SE + + +I Sbjct: 152 KRVRKPLTEEEI------ELLRQSCKTD----REEALIEFLISTGCRLSEIVEVNKDDIN 201 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP--LNP 240 + +L + GKGDK R V + K +L+ Y L D N LF R L Sbjct: 202 WHEMSLFVVGKGDKERKV-YFSTKAKILLKKYLLTRADNNE----ALFVTSRSPHNRLGG 256 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 QR I+++ G+ S H RHSFAT+ +++G + IQ ++GH +TTQIY Sbjct: 257 RSIQREIKKIANMAGIEKSIHPHLFRHSFATYKINSGMPMPIIQHLMGHESPATTQIYAQ 316 Query: 301 VNSK 304 ++ + Sbjct: 317 LSEE 320 >gi|32474109|ref|NP_867103.1| integrase/recombinase [Rhodopirellula baltica SH 1] gi|32444646|emb|CAD74648.1| putative integrase/recombinase [Rhodopirellula baltica SH 1] Length = 347 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 92/187 (49%), Gaps = 22/187 (11%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 +KS LP +++K+ +++ R+ +L +LY GLR++E L Sbjct: 41 RKSKQLPVVMSKKEVQRMMEAAR----------TLRDKLLLTVLYATGLRVAEVARLQWS 90 Query: 180 NIMDDQSTLRIQ-GKGDKIRIV----PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234 + D+ +R+Q GKG K R V LLP +R+ L + P Sbjct: 91 DFDFDRQQIRVQLGKGKKDRYVMLADDLLPLMRQ-------LWRHTKGVGYLFPSEGRRV 143 Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 + L+P QR ++Q R G+ + T H+ RHSFATHL+ +G D+R IQ +LGH L T Sbjct: 144 DRHLSPRTIQRAVKQARILSGIGKAVTPHSFRHSFATHLIESGTDIRFIQKLLGHTNLET 203 Query: 295 TQIYTNV 301 T +YT V Sbjct: 204 TSLYTKV 210 >gi|159046238|ref|YP_001541910.1| integrase family protein [Dinoroseobacter shibae DFL 12] gi|159046544|ref|YP_001542214.1| integrase family protein [Dinoroseobacter shibae DFL 12] gi|157913997|gb|ABV95429.1| phage integrase [Dinoroseobacter shibae DFL 12] gi|157914303|gb|ABV95733.1| phage integrase [Dinoroseobacter shibae DFL 12] Length = 334 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 80/292 (27%), Positives = 132/292 (45%), Gaps = 24/292 (8%) Query: 24 NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF---ISKRRT 80 +L E G S+ T+ +Y C L F+ + + I L IRAF I + R Sbjct: 15 HLPHECGASRHTIAAYACAFTLLLRFVTGRVKRTPSELFIEDLDIQTIRAFLEHIEEGRA 74 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNS-LPRALNEKQALTL 137 + R+ + L+ IKSF ++++ R+ + +R + K++++ L L +++ L Sbjct: 75 NSVRSRNAR--LAAIKSFFRFVEHRQPACLEQAMMIRAMPTKRTDAKLIDYLTKEEVRAL 132 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQGKGDK 196 + HT R+ A+L+L Y GLR SE L++ + D S +RI GKG + Sbjct: 133 LAAPNRHTPG-----GLRDRAMLHLTYAAGLRASELLAVRMDDFPDGSFSNVRILGKGRR 187 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-----R 251 R++PL + AI + + P + LF G+ + F +RQ R Sbjct: 188 ERVLPLWKETQCAIRAWLAVRPGRVGPE----LFLNRDGRRMTRDGFAYRLRQHVATAER 243 Query: 252 RYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + T H LRHS A H L GD+R + LGH + TT++Y + Sbjct: 244 STPSIAAKQVTPHVLRHSCAMHTLQATGDIRKVALWLGHASIQTTEMYLRAD 295 >gi|82703133|ref|YP_412699.1| Phage integrase [Nitrosospira multiformis ATCC 25196] gi|82411198|gb|ABB75307.1| Phage integrase [Nitrosospira multiformis ATCC 25196] Length = 329 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 129/292 (44%), Gaps = 31/292 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W N++ S T ++Y+ D R F+ F + E R ++ + + A+ + Sbjct: 38 WFANID-----SLQTRRAYQNDLRGFMAFAGIVSPEDF-----RLITRSHVLAWRKRLEE 87 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN--LKKSNSLPRALNEKQALTLV 138 +++G +++R L+ + S +YL + T + + ++ ++ AL + QA Sbjct: 88 EQLGGATIRRKLAALSSLFEYLCEANAVTHNPVKGVKRPPVESWQGKTPALGDVQA---- 143 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ---STLRIQGKGD 195 LL + R+ AIL L G+R E L ++ + LRI+GKG Sbjct: 144 -RALLEAPNAKTLKGKRDRAILSALLYHGIRREELARLKVKDYNQSRRGVPHLRIKGKGG 202 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-------PLNPG--VFQRY 246 K+R +P P I EY + + + PLFR ++ L P F+ Sbjct: 203 KMRFIPTHPGTLTLIEEYLEAAGHGHDPDA--PLFRPVKNNVHGHTLTALTPDSIYFEVV 260 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 ++ LR+ + H +R + AT+ L NG D+ +Q LGH ++TT+IY Sbjct: 261 LKYLRKLGIFGENMGPHVMRATAATNALDNGADIAKVQEWLGHANIATTRIY 312 >gi|87302036|ref|ZP_01084870.1| Integron integrase; Phage integrase; Phage integrase N-terminal SAM-like domain [Synechococcus sp. WH 5701] gi|87283604|gb|EAQ75559.1| Integron integrase; Phage integrase; Phage integrase N-terminal SAM-like domain [Synechococcus sp. WH 5701] Length = 323 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 79/312 (25%), Positives = 134/312 (42%), Gaps = 62/312 (19%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRS 87 R ++ T+ SY ++FL F ++ R++ EI AF+S T+ ++ + Sbjct: 20 RHYARRTITSYAQWVKRFLRFHG--------MRHPREMGEEEINAFLSHLATEGQVSAST 71 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 ++LS + + + + ++ R K+ LP L + ++ Sbjct: 72 QNQALSALLFLYRTVLSGDVGNLEGVVRARQRKR---LPVVLTVAEVKAVLSQ------- 121 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206 ++ + LLYG GLR+ EAL L +++ L ++ GKGDK R+ L SV Sbjct: 122 ----LEGVEQLVAQLLYGSGLRLMEALRLRVKDVDCQARQLTVRSGKGDKDRVTMLPTSV 177 Query: 207 RKAILEYY----DLCPFDLNLN---IQLPLFRGIRGKP---------------------- 237 + + Y ++ DL + LPL G R P Sbjct: 178 VEPVQAYLLAVREIHRADLAAGWGRVMLPLALG-RKYPTAASEWAWQWVFPQAHRWHDRN 236 Query: 238 --------LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289 ++P + Q+ +++ G+ + HT RHSFATHLL G D+R+IQ +LGH Sbjct: 237 NRTEGRHHIDPSLIQKAVKRAVLSAGVSKQASCHTFRHSFATHLLERGHDIRTIQELLGH 296 Query: 290 FRLSTTQIYTNV 301 + TT IYT+V Sbjct: 297 SDVKTTMIYTHV 308 >gi|32471146|ref|NP_864139.1| integrase [Rhodopirellula baltica SH 1] gi|32396848|emb|CAD71816.1| integrase [Rhodopirellula baltica SH 1] Length = 292 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/152 (36%), Positives = 79/152 (51%), Gaps = 12/152 (7%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV----PLLPSVRKA 209 R+ +L +LY GLR++E L + D+ +R+Q GKG K R V LLP +R+ Sbjct: 11 RDKLLLTVLYATGLRVAEVARLQWSDFDFDRQQIRVQLGKGKKDRYVMLADDLLPLMRQ- 69 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 L + P + L+P QR ++Q R G+ + T H+ RHSF Sbjct: 70 ------LWRHTKGVGYLFPSEGRRVDRHLSPRTIQRAVKQARILSGIGKAVTPHSFRHSF 123 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 ATHL+ +G D+R IQ +LGH L TT +YT V Sbjct: 124 ATHLIESGTDIRFIQKLLGHTNLETTSLYTKV 155 >gi|219854815|ref|YP_002471937.1| hypothetical protein CKR_1472 [Clostridium kluyveri NBRC 12016] gi|219568539|dbj|BAH06523.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 355 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 100/326 (30%), Positives = 153/326 (46%), Gaps = 43/326 (13%) Query: 5 NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-EKITIQ-- 61 +L +I + EL ++L L +G SK TL+ Y+ D FL FL Y EK Q Sbjct: 31 SLNQIYNPELPGYLNDFLNYLGTIKGKSKNTLEGYKVDLTMFLRFLKLYKGLEKEGSQFE 90 Query: 62 ----------TIRQLSYTEIRAFIS---KRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKI 107 I+Q++ +++ AFIS R K R+ R ++ +KSF KYL K K+ Sbjct: 91 KIKIKDIDIDIIKQITLSDLFAFISFIENYRHNKSYARA--RKVASLKSFFKYLCSKAKL 148 Query: 108 TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA----RNSAILYLL 163 +E+ L + + + S P + L + + ID R+ I+ Sbjct: 149 ISENPALELESPQISKRNP-----------IYLSLKESKLLLESIDGKFKERDYCIITFF 197 Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223 CG+R+SE S+ NI +D TL + GKG+K R + L S +A+ Y L D L Sbjct: 198 LNCGMRLSELCSINISNIKED--TLTVIGKGNKERTIYLNKSCLEALKNY--LTSRDEYL 253 Query: 224 NI---QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG- 278 N + LF +N + +++ + L T H LRH+ AT + G Sbjct: 254 NKIKDKDALFISKNYARINKRSVEIMLKKYLKKANLDSEKYTPHKLRHTAATLMYKYGHV 313 Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSK 304 D+RS+Q ILGH +STTQIYT+V+ + Sbjct: 314 DIRSLQKILGHENVSTTQIYTHVDDE 339 >gi|254479225|ref|ZP_05092570.1| site-specific recombinase, phage integrase family [Carboxydibrachium pacificum DSM 12653] gi|214034826|gb|EEB75555.1| site-specific recombinase, phage integrase family [Carboxydibrachium pacificum DSM 12653] Length = 348 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 125/233 (53%), Gaps = 15/233 (6%) Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPRALNE 131 +F++ R+ R+ R ++ ++SF YL +K K+ +++ + + K S P L Sbjct: 112 SFVTNERSNTPPARA--RKVASLRSFYNYLYRKAKVISKNPTQELESPKLSVRHPIYLTL 169 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 +++ L++++ R+ AI+ L CGLR+SE +++ +I +D+ L + Sbjct: 170 EESKKLLNSI-------DGPFKERDYAIITLFLNCGLRVSELVNINLDDIKEDK--LTVI 220 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 GKG+K R + L + KAI +Y + P + + + LF R K ++ Q +++ Sbjct: 221 GKGNKQRTIYLNEACIKAISDYLKVRPKE-GVKDKKALFLSKRLKRISVKTVQYLVKKHL 279 Query: 252 RYLGLP-LSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVN 302 ++ L +AH LRH+ AT + G D+R++Q +LGH +STTQIYT+V+ Sbjct: 280 KHANLEGKKYSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVD 332 >gi|239817469|ref|YP_002946379.1| integrase family protein [Variovorax paradoxus S110] gi|239804046|gb|ACS21113.1| integrase family protein [Variovorax paradoxus S110] Length = 290 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 68/223 (30%), Positives = 103/223 (46%), Gaps = 22/223 (9%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV---DNVLL 143 +L +++G+K F +R E M + +LP L+ +A L+ N Sbjct: 71 TLNATITGLKFFFDVTLRRGELVE----RMSYVHVPQTLPVVLSRDEAARLIAAATNPKY 126 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL 202 HT+ L + YG GLR+SE ++L +I ++ TLR+ QGKG K R L Sbjct: 127 HTA-------------LSIAYGTGLRVSEIVALKVGDIDSERMTLRVEQGKGRKDRYAML 173 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTT 261 P + + + ++ + LF G PL R + + T Sbjct: 174 SPVLLERLRAWWRYANAKGKMLPNGWLFPGQNPVDPLTARQLNRAVHDAAAAAKIDKRVT 233 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 HTLRHSFATHLL D+R IQ +LGH +L TT +YT+V ++ Sbjct: 234 MHTLRHSFATHLLEQKVDIRVIQVMLGHKKLETTSVYTHVATE 276 >gi|189425308|ref|YP_001952485.1| TetR family transcriptional regulator [Geobacter lovleyi SZ] gi|189421567|gb|ACD95965.1| putative transcriptional regulator, TetR family [Geobacter lovleyi SZ] Length = 325 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 81/286 (28%), Positives = 128/286 (44%), Gaps = 65/286 (22%) Query: 74 FISKRRTQKIGDRSLKRSLSGI--------------KSFLKYLKKRKITTESNILN-MRN 118 + +KR Q++G + ++ L+ + K+ L++L K + + L+ + Sbjct: 41 YHNKRHPQEMGKKEIEGFLTYLATERQVAAATQNQAKAALQFLYKEVLEIQLPWLDEVEQ 100 Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY-LLYGCGLRISEALSLT 177 KK LP L EK+ +L+ +V + A+L L+YG G+R+ E L L Sbjct: 101 AKKPKRLPVVLTEKEVHSLLAHV------------PQAYALLARLMYGTGMRLLEGLRLR 148 Query: 178 PQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY----------------------- 213 Q++ +++ L I +GKG K R+ L S+ K + E+ Sbjct: 149 VQDLDFERAELLIREGKGGKDRVTMLPQSLLKPLQEHLKQVKQAHEQDLLKGYGEVWLSE 208 Query: 214 -----YDLCPFDLNLNIQLPLFR-------GI-RGKPLNPGVFQRYIRQLRRYLGLPLST 260 Y + P R G+ R L+ QR I+Q GL + Sbjct: 209 SVARKYPNAGREWVWQYVFPSARLSVDPRSGVTRRHHLDEKGLQRAIKQAAVDAGLTKNV 268 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 T HTLRHSFATHLL G D+R++Q +LGH + TT IYT+V +K G Sbjct: 269 TPHTLRHSFATHLLQAGYDIRTVQELLGHKDVQTTMIYTHVLNKGG 314 >gi|323705364|ref|ZP_08116939.1| integrase family protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323535266|gb|EGB25042.1| integrase family protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 327 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 76/252 (30%), Positives = 131/252 (51%), Gaps = 18/252 (7%) Query: 58 ITIQTIRQLSYTEIRAFIS---KRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNI 113 + I I + ++ AF+S R+ R+ R ++ ++SF YL KRK+ T++ Sbjct: 67 VDISLIESIDLNDLYAFLSFVTHERSNTPPARA--RKVASLRSFYNYLYAKRKVITKNPA 124 Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173 L + + K + + LTL ++V L S + ++ + R+ AI+ L CGLR+SE Sbjct: 125 LELESPK------LGIRQPVYLTLDESVKLLNSIDGEFKE-RDYAIITLFLNCGLRLSEL 177 Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233 ++ +I DD+ L + GKG+K R V L + AI +Y + P D + + LF Sbjct: 178 ANINITDIKDDK--LTVIGKGNKQRTVYLNDACINAINDYLKVRPHD-GVKDKKALFLSK 234 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFR 291 R + ++ Q +++ + L + H LRH+ AT + G D+R++Q +LGH Sbjct: 235 RLQRISIKTIQYIVKKHLKDANLDGKKYSTHKLRHTAATLMYRYGKVDIRTLQRLLGHSN 294 Query: 292 LSTTQIYTNVNS 303 +STTQIYT+V+ Sbjct: 295 VSTTQIYTHVDD 306 >gi|228900732|ref|ZP_04064950.1| Integrase/recombinase [Bacillus thuringiensis IBL 4222] gi|228858916|gb|EEN03358.1| Integrase/recombinase [Bacillus thuringiensis IBL 4222] Length = 305 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 77/304 (25%), Positives = 140/304 (46%), Gaps = 16/304 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L++ E+ GL+ T+QSY +F +L +E I I+ I + SK Sbjct: 9 KDYLEDKELS-GLAPRTIQSYGDTLNEFSRWLVV-EKEIINIEDITPPVIKGYLLYCSKE 66 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKIT-TESNILNMRNLKKSNSLPRALNEKQALTL 137 R + R+ K L +K+F +YL+ I SN N K++ + +++Q + Sbjct: 67 RGNTVVTRNGK--LQHLKTFFRYLEDEDIIEIRSNPTNKIKPAKTDKTIKVYSDEQIKQM 124 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 + S E R ++ +L G G+R+ E +S+ ++ T+ I GK K Sbjct: 125 LRYYRRMRSRENTLYSYRGHTVIVVLAGTGIRLGELVSMRWDSVDLLNKTITIFGKNRKS 184 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLG 255 PL V + + E+ C I+LP +F RG PL + +L +G Sbjct: 185 LSTPLTDKVARELYEWRLFCE---KYYIKLPAHVFNDHRGNPLTVNAVKLMFTRLSSRMG 241 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 TTAH RH++A++ L G D+ ++ ++ H ++ TT++Y + G+ + E D Sbjct: 242 F--KTTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHA----FGNSLAESND 295 Query: 316 QTHP 319 + +P Sbjct: 296 KYNP 299 >gi|257485772|ref|ZP_05639813.1| Phage integrase:Phage integrase, N-terminal SAM-like protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|302130294|ref|ZP_07256284.1| Phage integrase:Phage integrase, N-terminal SAM-like protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|331012868|gb|EGH92924.1| Phage integrase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 320 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 75/289 (25%), Positives = 131/289 (45%), Gaps = 28/289 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W NL+ R T ++Y+ D F F+ + ++ R ++ + + A+ ++ Sbjct: 32 WFANLDNPR-----TRRAYQNDLEDFCGFVGLASADEF-----RVVTRSHVLAWRAQLEH 81 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVD 139 + + +++R L+ + S +L ESN + N P+ NE + L D Sbjct: 82 RGLAGATIRRKLAALASLFDHL------LESNAIAGGNPVHGVKRPKIESNEGKTPALGD 135 Query: 140 N---VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194 + LL ET R+ A++ +L GLR EA L +I D + L++ GKG Sbjct: 136 HQAKALLEAPDETTLKGLRDRALMAVLLYHGLRREEAALLQVGDIQDRRGIQHLKVHGKG 195 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL---- 250 K+R +PL P I +Y + + ++PLF +RGK G+ I + Sbjct: 196 GKVRYLPLHPVAAGRIHQYLESSGHHW-ADRKVPLFIPLRGKLTGAGITANGIYMVVAAY 254 Query: 251 RRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + G+ + H LR + AT+ L + D+ +Q+ LGH +STT+IY Sbjct: 255 AKKAGIQVDGLGVHGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303 >gi|332971281|gb|EGK10244.1| tyrosine recombinase XerC [Desmospora sp. 8437] Length = 302 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 73/296 (24%), Positives = 135/296 (45%), Gaps = 29/296 (9%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 N+L +L+ + G S T+++YE QF+ + T E+ +++ + + + + R Sbjct: 15 NFLFDLQSD-GRSPKTMKTYEGVVHQFIRWFEDTTGERFDPESVTPIDAADYKRHLLDRS 73 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 ++ ++ +K + +L K+ + ES +++ +K+ PR L+ K+ L+ Sbjct: 74 KPA----TVNKARIALKRYFDWLVKQGVCKESPWKSIQPVKQGRQAPRWLDRKEQRALIR 129 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM----DDQSTLRIQGKGD 195 V K + R+ AI++LL GLR+ E L +++ ++ +R GKG Sbjct: 130 QV-------QKERNPRDIAIVFLLLHGGLRVEELCHLQLEDVKLSERKGKAVVR-HGKGG 181 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 K R VPL VRKA+ E+ + + LF R + Q +R+ + G Sbjct: 182 KWREVPLNRDVRKALEEW-----LAVRSSFSPWLFVSTRKDQMTTRAVQYVVRKYGQRAG 236 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF------RLSTTQIYTNVNSKN 305 + + HTLRH+F L G L I ++ GH ++TT IYT ++ Sbjct: 237 MD-QCSPHTLRHTFCHELAVKGVPLDVIAALAGHMTADGRPNIATTAIYTTPGDQD 291 >gi|20807810|ref|NP_622981.1| site-specific tyrosine recombinase XerC [Thermoanaerobacter tengcongensis MB4] gi|34222923|sp|Q8RA66|XERC_THETN RecName: Full=Tyrosine recombinase xerC gi|20516368|gb|AAM24585.1| Integrase [Thermoanaerobacter tengcongensis MB4] Length = 353 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 125/233 (53%), Gaps = 15/233 (6%) Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPRALNE 131 +F++ R+ R+ R ++ ++SF YL +K K+ +++ + + K S P L Sbjct: 117 SFVTNERSNTPPARA--RKVASLRSFYNYLYRKAKVISKNPTQELESPKLSVRHPIYLTL 174 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 +++ L++++ R+ AI+ L CGLR+SE +++ +I +D+ L + Sbjct: 175 EESKKLLNSI-------DGPFKERDYAIITLFLNCGLRVSELVNINLDDIKEDK--LTVI 225 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 GKG+K R + L + KAI +Y + P + + + LF R K ++ Q +++ Sbjct: 226 GKGNKQRTIYLNEACIKAISDYLKVRPKE-GVKDKKALFLSKRLKRISVKTVQYLVKKHL 284 Query: 252 RYLGLP-LSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVN 302 ++ L +AH LRH+ AT + G D+R++Q +LGH +STTQIYT+V+ Sbjct: 285 KHANLEGKKYSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVD 337 >gi|188997103|ref|YP_001931354.1| integrase family protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188932170|gb|ACD66800.1| integrase family protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 297 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 77/291 (26%), Positives = 129/291 (44%), Gaps = 50/291 (17%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T+++Y D QF+ + + I +++ +I F + Q ++ R L+ Sbjct: 21 TVKNYRVDFNQFIKIVGD--------KNINEITKADIAKFRMTLQMQNRKSSTIARKLAS 72 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 I S +YL ++ + S I K S +P AL+ ++ L+D +D+ Sbjct: 73 INSLFQYLMDLELVSSSPITKSHRPKVSQKIPSALSNEEVKKLID-----------ALDS 121 Query: 155 -RNSAILYLLYGCGLRISEALSLTPQNIM--------------------DDQSTLRIQGK 193 ++ AI+ L GLR SE LS+ NI+ D + +R+ GK Sbjct: 122 IQDKAIVVLFLTTGLRSSELLSIKKSNIIVERNGQTFSIDRLIEGEVKEGDIAYIRVVGK 181 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 GDK R VP+ + +++Y L + L+ +F P++ + R I+ + + Sbjct: 182 GDKEREVPITGKPLEILVQY--LKSINEFLDDNEYIF------PISYHLLWRKIKNIGKK 233 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 L + L H LRH+ AT LS+G +LR IQ +LGH TT Y V K Sbjct: 234 LAITLH--PHKLRHTAATMALSSGAELRVIQELLGHASPVTTARYAKVGQK 282 >gi|254450128|ref|ZP_05063565.1| phage integrase [Octadecabacter antarcticus 238] gi|198264534|gb|EDY88804.1| phage integrase [Octadecabacter antarcticus 238] Length = 315 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/150 (38%), Positives = 76/150 (50%), Gaps = 8/150 (5%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDL 216 A L + YG GLR SE L +I + + + +GK K R L P + + EY+ Sbjct: 148 AALGISYGAGLRASEVCHLKVVDIDSGRMLIHVDEGKNGKDRKAMLSPGLLDLLREYW-- 205 Query: 217 CPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275 L + LF G + PL+P R + G+ T HTLRHSFATHLL Sbjct: 206 ----LEARPEGWLFPGKPKINPLSPRQLNRAFTSAKHMAGINKPATLHTLRHSFATHLLE 261 Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 G D+R IQ +LGH +LSTT YT+V +K Sbjct: 262 AGTDVRVIQVLLGHSKLSTTARYTHVAAKT 291 >gi|160874836|ref|YP_001554152.1| integron integrase [Shewanella baltica OS195] gi|160860358|gb|ABX48892.1| integron integrase [Shewanella baltica OS195] gi|315267074|gb|ADT93927.1| integron integrase [Shewanella baltica OS678] Length = 319 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 87/309 (28%), Positives = 133/309 (43%), Gaps = 58/309 (18%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 RG S T +SY + F+ F E + + + Q F++ +R I + + Sbjct: 18 RGYSIRTEKSYLYWIKAFINFHHKRHPETMGTEEVAQF-----LTFLANQRNVAINTQKI 72 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 + L YL ++ + E L K LP L+ + ++L+ N L Sbjct: 73 ALNA------LAYLYQKHLHHELGNLGFCYATKQRYLPTVLSPSE-ISLILNEL------ 119 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR--------- 198 D R+ I+ LYG GLR+SE L L Q+I +Q++L ++ GKG K R Sbjct: 120 ----DGRDRLIIERLYGSGLRVSECLRLRIQDIDIEQASLTVRDGKGHKDRQTILSHKCA 175 Query: 199 ---------------------IVPLLPSV--RK---AILEYYDLCPFDLNLNIQLPLFRG 232 I P LP+ RK A ++ + F P Sbjct: 176 IKLTAYINKAMEIQHRDNQQGIGPSLPNALERKYPHAFKQHGWMFIFPSTTTCINPYTGT 235 Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 + L+ V ++ + R + + T HT RHSFATHLL +G D+RS+Q +LGH + Sbjct: 236 LCRHHLHQSVIRKALGNAVRNIKITKRVTCHTFRHSFATHLLQSGSDIRSVQELLGHNDV 295 Query: 293 STTQIYTNV 301 STTQIYT+V Sbjct: 296 STTQIYTHV 304 >gi|313676041|ref|YP_004054037.1| integrase family protein [Marivirga tractuosa DSM 4126] gi|312942739|gb|ADR21929.1| integrase family protein [Marivirga tractuosa DSM 4126] Length = 372 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 76/287 (26%), Positives = 132/287 (45%), Gaps = 36/287 (12%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + Q LE++R L++ E T F F + K+ + T+I+ ++ Sbjct: 103 EAYFQKLELKR----YALKTAENYTACFDRFKRHFPTRKLM-----SIDETDIKNYLKGL 153 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 +K D + S++ IK + + ++ + ++ K+ LP L++++ + ++ Sbjct: 154 AQRKYSDSFVNLSINSIKFYYEVVE----GMPNRFYDIERPMKTERLPEILSKEEVIAMI 209 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKI 197 + K + ++ I+ +LY GLR E L+L +I + T+R+ QGKG K Sbjct: 210 N----------KTFNIKHQCIISILYSSGLRRGELLNLKLSDIDGKRMTIRVEQGKGKKD 259 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYL 254 R +IL L L P LF G +G+P + ++ + + + Sbjct: 260 RY---------SILSEKLLLKLRLYYKQYKPTHYLFEGKKGQPYSGSSVRQIVAKAAKNA 310 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + H LRHSFATHLL G DLR IQ +LGH TT+IYT+V Sbjct: 311 NINKPVRPHMLRHSFATHLLEAGTDLRHIQLLLGHNSTKTTEIYTHV 357 >gi|227539179|ref|ZP_03969228.1| integrase/recombinase [Sphingobacterium spiritivorum ATCC 33300] gi|227240861|gb|EEI90876.1| integrase/recombinase [Sphingobacterium spiritivorum ATCC 33300] Length = 357 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 79/284 (27%), Positives = 131/284 (46%), Gaps = 30/284 (10%) Query: 26 EIERGLSKLTLQSYECDT-RQFLIFLA--FYTEEKITIQTIRQLSYTEIRAFI-SKRRTQ 81 E +R L +++Y +T + +++ A Y + + + + L Y +RA+I T Sbjct: 84 EFQRMKEVLQMKAYSPNTIKTYMVEFAQLLYVVKDVPVDS---LGYDRLRAYILYCINTL 140 Query: 82 KIGDRSLKRSLSGIK-SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 KI + L L+ IK F + L K E + K+ ++LP+ L++K+ + + Sbjct: 141 KISESQLHSRLNAIKFYFEQVLHKPDFFAE-----IPRPKRRSTLPKVLSQKEVKRIFNT 195 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRI 199 V + ++ +L L YG GLR+SE ++L +I + + I+ GKG K R Sbjct: 196 VR----------NRKHLLMLQLCYGMGLRVSEVVNLKVSDIDSGRMQVLIEAGKGKKDRY 245 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 VPL +V + EYY + LF G G + Q + + + Sbjct: 246 VPLPTAVLDLLREYYK------AYRPKTYLFEGQYGGRYSVRSVQAVFKNAMKAAKVNRP 299 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 H LRHS+ATHLL G D+ IQ +LGH + TT +Y V + Sbjct: 300 IGIHGLRHSYATHLLEYGTDISFIQQLLGHNDIKTTMLYAKVGN 343 >gi|149200531|ref|ZP_01877542.1| Integron integrase [Lentisphaera araneosa HTCC2155] gi|149136380|gb|EDM24822.1| Integron integrase [Lentisphaera araneosa HTCC2155] Length = 415 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 85/297 (28%), Positives = 132/297 (44%), Gaps = 72/297 (24%) Query: 49 FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKI 107 +L F+ E + Q E+ +FIS QK + + ++ + + F +Y+ + ++ Sbjct: 132 YLDFHKEGEFDAQ--------EVSSFISHLAVQKCVAASTQNQAFNALVFFFRYVLEIEL 183 Query: 108 TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI----LYLL 163 S ++R ++K LP L++T E K I A + L+ Sbjct: 184 GDLSQ--SVRAVRKEK-LP---------------LVYTRDEVKAIMANMEGVPLLMARLI 225 Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILE---------- 212 YG GLR SEA L +++ + L I+G KGDK R VPL S+ AI E Sbjct: 226 YGGGLRHSEAYRLRIKDLDRGRMCLTIRGAKGDKDREVPLGKSLLPAIDEQLERIRKLYD 285 Query: 213 ----------------------------YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 ++ L P D NL++ P IR ++ Sbjct: 286 EDRTNDVAGCYLPHTLENKSPNVGKEWGWFWLFPAD-NLSLD-PRANKIRRHHVSSNYLN 343 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 ++ R G+ + T HTLRHSFATH+L +G D+R +Q +LGH +STTQIYT+V Sbjct: 344 GPYKKALRKAGIVKAGTVHTLRHSFATHILEDGYDIRVLQELLGHSDVSTTQIYTHV 400 >gi|206895665|ref|YP_002247136.1| site-specific integrase/recombinase XerD protein [Coprothermobacter proteolyticus DSM 5265] gi|206738282|gb|ACI17360.1| site-specific integrase/recombinase XerD protein [Coprothermobacter proteolyticus DSM 5265] Length = 289 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 82/288 (28%), Positives = 125/288 (43%), Gaps = 48/288 (16%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 L++E + WL + + S T++SY D FL F + Q T+I Sbjct: 22 LVEEYEQWLV---LRKQASPRTVRSYLKDVDDFLAF-------------VEQERSTDIEL 65 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 F + + ++ R LS + SF +L+++ I E ++ +K +P N Sbjct: 66 FKQFLHDKGLSPSTVARKLSAVSSFSAFLRRQGIALEFERPKVKIPQKLMQVP---NWND 122 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 LVD V HE + L ++ CGLR SE L L +I DD +R GK Sbjct: 123 LDQLVDEV---QDHEVR-------LALRMMLHCGLRASEVLELRWSDIGDDYMLVR--GK 170 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 G K R++P+ ++R I + +F +GK + R R Sbjct: 171 GGKQRMLPVSEAIRTDIESIKRKGSY---------VFCDKKGKKRSRVWLWRKTRAF--- 218 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 L T H LRH+FAT L+N D+R +Q LGH ++TTQ YT+V Sbjct: 219 ----LGTHPHILRHAFATE-LTNYADIRVVQESLGHSDITTTQRYTHV 261 >gi|254450213|ref|ZP_05063650.1| phage integrase [Octadecabacter antarcticus 238] gi|198264619|gb|EDY88889.1| phage integrase [Octadecabacter antarcticus 238] Length = 315 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/150 (38%), Positives = 76/150 (50%), Gaps = 8/150 (5%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDL 216 A L + YG GLR SE L +I + + + +GK K R L P + + EY+ Sbjct: 148 AALGISYGAGLRASEVCHLKVVDIDSGRMLIHVDEGKNGKDRKAMLSPGLLDLLREYW-- 205 Query: 217 CPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275 L + LF G + PL+P R + G+ T HTLRHSFATHLL Sbjct: 206 ----LEARPEGWLFPGKPKINPLSPRQLNRAFTSAKHMAGINKPATLHTLRHSFATHLLE 261 Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 G D+R IQ +LGH +LSTT YT+V +K Sbjct: 262 AGTDVRVIQVLLGHSKLSTTARYTHVAAKT 291 >gi|91200146|emb|CAJ73190.1| similar to site-specific tyrosine recombinase [Candidatus Kuenenia stuttgartiensis] Length = 357 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 77/311 (24%), Positives = 133/311 (42%), Gaps = 60/311 (19%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRS 87 R S+ T Q+Y ++F+ F ++ +++ EI F++ +K+ + Sbjct: 29 RHYSRRTEQTYCHWVKRFIFFHK--------VRHPAEMAEPEINDFLTHLAVKEKVSAST 80 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 ++LS + +++ R++ ++ R K LP + + ++ N+ Sbjct: 81 QNQALSALLFLYRHVIGREVGDLGKVIRAR---KPTRLPVVMTRDEVKAVLSNL-----S 132 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV------ 200 E KW+ I L+YG GLR+ E L L Q+I ++ + ++ GKG K RI Sbjct: 133 EDKWL------IASLMYGAGLRLMECLRLRVQDIDFSRNEILVRDGKGAKDRITMLPELL 186 Query: 201 --PLLPSVRK--------------------AILEYYDLCPFDLNLNIQLPLFRGIRGKP- 237 PL +RK A+ Y P D P + Sbjct: 187 KKPLQDHLRKVKAIHEKDLAEGWGRVQMPDALDRKYPNAPADWRWQWVFPQENRWKNTKT 246 Query: 238 -------LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290 ++ + QR +++ G+ + HT RHSFATHLL +G D+R+IQ +LGH Sbjct: 247 TEEGRHHMDESIMQRTVKEAVTSSGITKRASCHTFRHSFATHLLESGYDIRTIQELLGHK 306 Query: 291 RLSTTQIYTNV 301 + TT IYT+V Sbjct: 307 DVKTTMIYTHV 317 >gi|60550189|gb|AAX24191.1| integrase [Xanthomonas campestris pv. begoniae] gi|60550194|gb|AAX24195.1| integrase [Xanthomonas campestris pv. begoniae] Length = 339 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 62/177 (35%), Positives = 90/177 (50%), Gaps = 37/177 (20%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAI---------L 211 L YG G+R+ E L L ++ + + ++ GKG K R VPL S+RKA+ + Sbjct: 141 LPYGSGMRMMECLRLRIMDVDAARGEMLVRDGKGGKDRRVPLPHSLRKALQRKRERALLV 200 Query: 212 EYYDLC--------PFDL-----NLNIQ------LPLFRGIR----GKP----LNPGVFQ 244 DL P L N +++ P R R G+P ++ + Q Sbjct: 201 HVADLAAGAGRVFLPHALARKYPNADVEPGWQYLFPSARRSRDPRSGRPGRHHVSEEILQ 260 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 R ++ R+ G+ T HTLRHSFATHLL G D+R++Q +LGH +STTQIYT+V Sbjct: 261 RAVQSARQQAGIVKPATCHTLRHSFATHLLEAGHDIRTVQELLGHKDVSTTQIYTHV 317 >gi|307705945|ref|ZP_07642775.1| tyrosine recombinase xerD [Streptococcus mitis SK597] gi|307620500|gb|EFN99606.1| tyrosine recombinase xerD [Streptococcus mitis SK597] Length = 295 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 81/287 (28%), Positives = 131/287 (45%), Gaps = 24/287 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L + + LS T+++Y+ D QF Y + Y + ++I + Sbjct: 9 YLDYCKTHKRLSSHTIRAYKNDLMQF------YNSD-----------YDNVESYIEQLTR 51 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALN----EKQAL 135 I +L+R ++ +K F YLK + I E+ +R + LP+ + + + Sbjct: 52 SNIKTNTLRRKIACMKVFYNYLKYQNIIEENPFNQLRFQFRTEKVLPKTIPYDILKSIFI 111 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L V++ + K RN I+ LL G+RISE + ++I TL I GKG Sbjct: 112 YLEQKVIVSKTDYQKQHAERNLLIISLLLSTGIRISELCHIHLKDINLSNKTLHIIGKGK 171 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 K RI+ L +LE Y + + + P + KPL+ + I+++ Sbjct: 172 KERILFLGDQKTFNLLETYINKTRNESNDFLFPGKHSL--KPLSEQSVRLVIKRIVEQNN 229 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + T H RHSFAT LL + D+R IQ ILGH +S TQIYT+V+ Sbjct: 230 FSRTITPHMFRHSFATMLLDSDVDIRYIQQILGHSSISITQIYTHVS 276 >gi|34557587|ref|NP_907402.1| integrase-recombinase protein XERCD family [Wolinella succinogenes DSM 1740] gi|34483304|emb|CAE10302.1| INTEGRASE-RECOMBINASE PROTEIN XERCD FAMILY [Wolinella succinogenes] Length = 363 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 73/238 (30%), Positives = 118/238 (49%), Gaps = 21/238 (8%) Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI----LNMRNL-----KKSNSLPRALN 130 T + D S K + SF Y+ K+ + N + ++N K LP +N Sbjct: 111 TSGLSDASKKNHRIALLSFFGYIDKQNQDDQGNSHLFRIELKNWGGLRGKSGEKLPAYMN 170 Query: 131 EKQALTLVDNVLLHTSHETKW-IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-- 187 EK+ ++ + S+E I ARN ++ L+ G+R+SEAL L ++ + DQ + Sbjct: 171 EKELERFLEAL---DSYEFSLDIRARNRLVIKLILYTGIRVSEALGLRLKDFLPDQDSYL 227 Query: 188 LRIQGKGDKIRIVPLLPS-VRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQR 245 L+I+GKG+K R+V + ++K + E+ + +LN Q LF +G L R Sbjct: 228 LKIRGKGNKERMVMVKKEPIQKELDEWLGVRQ---SLNAQEDWLFCNQKGGRLTQAYVSR 284 Query: 246 YIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + Q+ + G+ AH LRHSFAT L DL +Q LGH L+T++IYT+ + Sbjct: 285 IVEQILLWAGIRKEKNGAHMLRHSFATLLYQKKRDLVLVQEALGHADLNTSRIYTHFD 342 >gi|114047627|ref|YP_738177.1| integron integrase [Shewanella sp. MR-7] gi|113889069|gb|ABI43120.1| integron integrase [Shewanella sp. MR-7] Length = 319 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 74/239 (30%), Positives = 109/239 (45%), Gaps = 47/239 (19%) Query: 99 LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158 L YL ++ + E L K LP L+ + ++L+ N L D R+ Sbjct: 77 LAYLYQKHLHHELGDLGFCYATKQRHLPTVLSPSE-ISLILNEL----------DGRDKL 125 Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR------------------- 198 I+ LLYG GLR+SE L L Q+I ++++L ++ GKG K R Sbjct: 126 IIELLYGSGLRVSECLRLRIQDIDIERASLSVRDGKGHKDRQTILSHRCAEKLTTYIEKA 185 Query: 199 -----------IVPLLPSV--RK---AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242 I P LP+ RK A ++ + F + P + L+ V Sbjct: 186 IKTQQNDNLRGIGPSLPNALERKYPNAFRQHGWMFIFPSSTTCINPYTGTLCRHHLHQSV 245 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 ++ + R + + T HT RHSFATHLL G D+RS+Q +LGH +STTQIYT+V Sbjct: 246 IRKALGNAVRNIQMNKRVTCHTFRHSFATHLLQAGRDIRSVQELLGHNDVSTTQIYTHV 304 >gi|332670451|ref|YP_004453459.1| integrase family protein [Cellulomonas fimi ATCC 484] gi|332339489|gb|AEE46072.1| integrase family protein [Cellulomonas fimi ATCC 484] Length = 340 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/227 (26%), Positives = 104/227 (45%), Gaps = 10/227 (4%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 +++R + ++ F+++L+ T +L + ++ LP ++ + L L Sbjct: 87 TVQRRVGTLRLFVRWLQMEGHLTGDPMLRIEAPERPVRLPAGWDDAELLRLAKVAWEVAP 146 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLL 203 + + AR+ A LL G+R SE SLT +++ D ++ L + GKG++ R VP+ Sbjct: 147 GDRRRWPARDRAAFALLSTTGVRASELCSLTDRSLRVEDDGEAVLTVIGKGNRQRNVPVP 206 Query: 204 PSVRKAILEYYDLCPFDLNLNIQ---LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-- 258 P + + EY + D PL R G+PL G + R G+ Sbjct: 207 PEALRVVEEY--MAERDERFGPPEHGAPLLRLSSGRPLQRGALNHLVDGWIRRSGVAKQE 264 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 AH RH+FA L+ +G ++QS+LGH L TT IY + + Sbjct: 265 GEAAHGFRHTFAKGLIRSGVPAPAVQSLLGHEDLKTTGIYVKATAAD 311 >gi|254436771|ref|ZP_05050265.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] gi|198252217|gb|EDY76531.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] Length = 290 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 57/150 (38%), Positives = 79/150 (52%), Gaps = 10/150 (6%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYY-D 215 A L + YG GLR SE SL +I D+ + + +GKG K R V L P + + +Y+ + Sbjct: 123 AALSISYGAGLRASEVCSLKVSDIDSDRMLIHVDEGKGGKDRKVMLSPDLLDLLRDYWRE 182 Query: 216 LCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 P LF G + P++ R + +G+ T HTLRHSFATHLL Sbjct: 183 AQPAGW-------LFPGKPKINPISARQLSRAFNSAKHVVGISKPATLHTLRHSFATHLL 235 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 D+R IQ +LGH +LSTT YT+V +K Sbjct: 236 EANIDVRVIQVLLGHAKLSTTARYTHVATK 265 >gi|225377377|ref|ZP_03754598.1| hypothetical protein ROSEINA2194_03025 [Roseburia inulinivorans DSM 16841] gi|225210778|gb|EEG93132.1| hypothetical protein ROSEINA2194_03025 [Roseburia inulinivorans DSM 16841] Length = 340 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 82/294 (27%), Positives = 137/294 (46%), Gaps = 25/294 (8%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK---ITIQTIRQLSYTEIRAF-ISKRRT 80 L I+R LS ++ +Y DT F + L FY EK + T+ L+ +I F + ++ Sbjct: 20 LPIQRNLSPNSIATYR-DT--FRLLLLFYDTEKHIKPNLLTLDMLNVQQIEDFMLWLKKE 76 Query: 81 QKIGDRSLKRSLSGIKSFLKYLK----KRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + G + + L +KSF +YL+ + + N L +R +K+ + L Sbjct: 77 RNCGASTCNQRLGALKSFFRYLQFALPDCALQCQEN-LAIRPMKQPEPGLKYLTIDGIKL 135 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGD 195 L++ + T + R+ AIL L+Y G R+ E + +I +T+RI GKGD Sbjct: 136 LLEQPDIKTKY-----GRRDLAILSLMYDTGARVQEIADIKIVHIRFSAPATIRITGKGD 190 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN----PGVFQRYIRQLR 251 K R+VPLL + +Y D N LF+ G+ L+ + +Y R Sbjct: 191 KTRVVPLLSRTEDILKQYIKDFKIDAGGNDAY-LFQNRSGQQLSRFGISYILTKYADMAR 249 Query: 252 RYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + +P + H +RHS A HLL +L I+ +LGH ++TT+IY ++ Sbjct: 250 KVHPELIPEKLSPHCIRHSKAMHLLQANVNLVYIRDLLGHSSVTTTEIYARADT 303 >gi|254449557|ref|ZP_05062994.1| phage integrase [Octadecabacter antarcticus 238] gi|198263963|gb|EDY88233.1| phage integrase [Octadecabacter antarcticus 238] Length = 315 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 57/150 (38%), Positives = 76/150 (50%), Gaps = 8/150 (5%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDL 216 A L + YG GLR SE L +I + + + +GK K R L P + + EY+ Sbjct: 148 AALGISYGAGLRASEVCHLKVVDIDSGRMLIHVDEGKNGKDRKAMLSPGLLDLLREYW-- 205 Query: 217 CPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275 L + LF G + PL+P R + G+ T HTLRHSFATHLL Sbjct: 206 ----LEARPEGWLFPGKPKINPLSPRQLNRAFTSAKHMAGINKPVTLHTLRHSFATHLLE 261 Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 G D+R IQ +LGH +LSTT YT+V +K Sbjct: 262 AGTDVRVIQVLLGHSKLSTTARYTHVATKT 291 >gi|13509250|emb|CAC35342.1| integrase [Vibrio salmonicida] Length = 320 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 65/182 (35%), Positives = 89/182 (48%), Gaps = 46/182 (25%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSVRKAILEYYDL 216 LLYG G+R+ E L L Q+I D + +RI GKG K R+V L+P +R I L Sbjct: 128 LLYGSGMRLMEVLRLRIQDIDFDYNCVRIWDGKGGKNRVVTLAGELIPQIRTQI----QL 183 Query: 217 CPFDLNLNIQLPLFRGIRGKPL--------NPGVFQRYI------------RQLRRY--- 253 L L++ PLF G+ L N + +Y+ +QLRR+ Sbjct: 184 VDNYLQLDLNNPLFCGVYMPHLLRKKYPNHNKQLGWQYLFPSYKLSIDPESKQLRRHHID 243 Query: 254 --------------LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 + T HTLRHSFATHLL +G D+R++Q+ LGH + TTQIYT Sbjct: 244 EKQLQRAVKKAAFNAHINKHVTPHTLRHSFATHLLQSGADIRTVQTQLGHSDIRTTQIYT 303 Query: 300 NV 301 +V Sbjct: 304 HV 305 >gi|66044739|ref|YP_234580.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] gi|63255446|gb|AAY36542.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] Length = 320 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 76/289 (26%), Positives = 130/289 (44%), Gaps = 28/289 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W NL+ R T ++Y+ D F F+ ++ R ++ + + A+ ++ Sbjct: 32 WFANLDNPR-----TRRAYQNDLEDFCGFVGL-----VSADEFRVVTRSHVLAWRAQLEH 81 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVD 139 + + +++R L+ + S +L ESN + N P+ NE + L D Sbjct: 82 RGLAGATIRRKLAALASLFDHL------LESNAIAGGNPVHGVKRPKIESNEGKTPALGD 135 Query: 140 N---VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194 + LL ET R+ AIL +L GLR EA L +I + + L++ GKG Sbjct: 136 HQAKALLDAPDETTLKGQRDRAILAVLLYHGLRREEAALLQVSDIQERRGIQHLKVHGKG 195 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL---- 250 K+R +PL P I + + L + ++PLF +RGK G+ I + Sbjct: 196 GKVRYLPLHPVAAGRIHLFLESSGHHL-ADRKVPLFMPLRGKLTGAGITANGIYTVVAAY 254 Query: 251 RRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + G+ + H LR + AT+ L + D+ +Q+ LGH +STT+IY Sbjct: 255 AKKAGIEVDGLGVHGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303 >gi|319425156|gb|ADV53230.1| integron integrase [Shewanella putrefaciens 200] Length = 319 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 87/309 (28%), Positives = 136/309 (44%), Gaps = 58/309 (18%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 RG S T ++Y + F+ F +K +T+ T+ F++ +R I + + Sbjct: 18 RGYSIRTEKTYLYWIKAFINF-----HDKRHPETMGTEEVTQFLTFLANQRNVAINTQKI 72 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 + L YL ++ + E L K LP L+ + ++L+ N L Sbjct: 73 ALNA------LAYLYQKHLHHELGDLGFCYATKQRHLPTVLSPLE-ISLILNEL------ 119 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR--------- 198 D R+ I+ LLYG GLR+SE L L Q+I ++++L ++ GKG K R Sbjct: 120 ----DGRDRLIIELLYGSGLRVSECLRLRIQDIDIERASLTVRDGKGHKDRQTILSHRCA 175 Query: 199 ---------------------IVPLLPSV--RK---AILEYYDLCPFDLNLNIQLPLFRG 232 I P LP+ RK A ++ + F + P Sbjct: 176 EKLTTYIEKAIKIQQNDNQQGIGPSLPNALERKYPNAFRQHGWMFIFPSSTTCINPYTGT 235 Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 + L+ V ++ + R + + T HT RHSFATHLL G D+RS+Q +LGH + Sbjct: 236 LCRHHLHQSVIRKALGNAVRNIQMNKRVTCHTFRHSFATHLLQAGRDIRSVQELLGHNDV 295 Query: 293 STTQIYTNV 301 STTQIYT+V Sbjct: 296 STTQIYTHV 304 >gi|114762822|ref|ZP_01442254.1| tyrosine recombinase XerD [Pelagibaca bermudensis HTCC2601] gi|114544432|gb|EAU47439.1| tyrosine recombinase XerD [Roseovarius sp. HTCC2601] Length = 141 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 52/129 (40%), Positives = 71/129 (55%), Gaps = 22/129 (17%) Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR-- 245 L I+GKG K R+VPL P R+A+ + C + Q R +GKP +P +F Sbjct: 2 LLIRGKGGKERMVPLSPPAREALAAWL-AC-----RDAQDEAGRA-KGKPGSPHLFPSRG 54 Query: 246 ------------YIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 I+ + G+ P T HTLRH+FATHLL NG DLR+IQ+ LGH + Sbjct: 55 KAGHLTRHAFYLQIKDMAVRAGVSPAKVTPHTLRHAFATHLLQNGADLRAIQTFLGHADV 114 Query: 293 STTQIYTNV 301 +TT+IYT+V Sbjct: 115 ATTEIYTHV 123 >gi|330448031|ref|ZP_08311679.1| integron integrase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492222|dbj|GAA06176.1| integron integrase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 321 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 67/249 (26%), Positives = 117/249 (46%), Gaps = 52/249 (20%) Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 ++L I +Y+ +++I+ L N K LP L+ + + +N+ + E Sbjct: 71 QALCAIIFLYRYVVRKEISN----LKYHNAKLPKRLPTVLSNNEVTAIFNNL----TGEY 122 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVP--LLP 204 K I +LYGCGLRI+EALSL ++I + ++ I +G+ D+ ++P ++ Sbjct: 123 KLIAG-------ILYGCGLRINEALSLRIKDINFESKSIFIFNSKGRKDRYTLLPNTIIT 175 Query: 205 SVRKAILEYYDLCPFDLN-----LNIQLPLFRGIRG------------------------ 235 ++K I + DL+ ++ L+R +G Sbjct: 176 PLKKQIEYVKRIHSDDLHHGYGTASVPTALYRKYQGALKLCGWQYIFPSKHRCTHPYDGY 235 Query: 236 ---KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 L+ F +++ + + + TAHT RHSFAT LL NG D+R++Q +LGH + Sbjct: 236 ICRHHLHVSAFSKHLHRAAKLSQIDKRVTAHTFRHSFATRLLENGTDIRTVQELLGHTDI 295 Query: 293 STTQIYTNV 301 TT+IYT+V Sbjct: 296 RTTEIYTHV 304 >gi|312621789|ref|YP_004023402.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002] gi|312202256|gb|ADQ45583.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002] Length = 286 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 77/296 (26%), Positives = 142/296 (47%), Gaps = 26/296 (8%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 +LKE +++L+ + ++ T++SY D F+ + T ++ + + + E ++ Sbjct: 1 MLKEFEDYLKT----QDFTENTIKSYTKDVELFMRWYVDTTGQEFLPENLTEFDLVEYKS 56 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS--NSLPRALNE 131 ++ ++ + ++ RS+ ++ F+ +L R + + ++ +K + N P L++ Sbjct: 57 YLLRKNHKP---STVNRSIISLRKFVHFLLDRGLLNKDISTRLKQVKDTTRNLSPVVLDK 113 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLR 189 K V H +T R+ A + LL G+RISEA++L ++ I + + ++ Sbjct: 114 KDIYKFRRTV--HQFGKT-----RDVAFVELLLNTGMRISEAINLKLEDVEISERKGKVK 166 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 I GKG R VPL RK + EY P+ + N LF GK L + I+ Sbjct: 167 IWGKGRSYREVPLNSDARKYLSEYLKKRPYSETNY-----LFVTSTGKKLTRNSAYKIIQ 221 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + + GL L H LRH FA L+ G ++ +Q +LGH R+ TT Y N+K Sbjct: 222 KYAKLAGLCLH--PHMLRHFFAQTLIDKGLNIYDVQQLLGHQRIETTLRYKKPNTK 275 >gi|319427384|gb|ADV55458.1| integron integrase [Shewanella putrefaciens 200] Length = 319 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 87/309 (28%), Positives = 134/309 (43%), Gaps = 58/309 (18%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 RG S T ++Y + F+ F K +T+ T+ F++ +R I + + Sbjct: 18 RGYSIRTEKTYLYWIKAFINF-----HNKRHPETMGTEEVTQFLTFLANQRNVAINTQKI 72 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 + L YL ++ + E L K LP L+ + ++L+ N L Sbjct: 73 ALNA------LAYLYQKHLHHELGDLGFCYATKQRHLPTVLSPSE-ISLILNEL------ 119 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR--------- 198 D R+ I+ LLYG GLR+SE L L Q+I + ++L ++ GKG K R Sbjct: 120 ----DGRDRLIIELLYGSGLRVSECLRLRIQDIDIESASLTVRDGKGHKDRQTILSHRCA 175 Query: 199 ---------------------IVPLLPSV--RK---AILEYYDLCPFDLNLNIQLPLFRG 232 I P LP+ RK A ++ + F + P Sbjct: 176 EKLTTYIEKAIKIQQNDNQQGIGPSLPNALARKYPNAFRQHGWMFIFPSSTTCINPYTGT 235 Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 + L+ V ++ + R + + T HT RHSFATHLL G D+RS+Q +LGH + Sbjct: 236 LCRHHLHQSVIRKALGNAVRNIQMNKRVTCHTFRHSFATHLLQAGRDIRSVQELLGHNDV 295 Query: 293 STTQIYTNV 301 STTQIYT+V Sbjct: 296 STTQIYTHV 304 >gi|253990782|ref|YP_003042138.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253990786|ref|YP_003042142.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211639116|emb|CAR67728.1| Similar to integrase/recombinase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211639122|emb|CAR67734.1| Phage integrase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782232|emb|CAQ85396.1| similar to phage integrase/recombinase [Photorhabdus asymbiotica] gi|253782236|emb|CAQ85400.1| similar to phage integrase/recombinase [Photorhabdus asymbiotica] Length = 376 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 78/312 (25%), Positives = 135/312 (43%), Gaps = 28/312 (8%) Query: 28 ERGLSKLTLQSYECDTRQFLIFL---AFYTEEKITIQTIRQLSYTEIRAFISKRRT--QK 82 ER S+ TL+ T +F+++ Y IT + + R R+T + Sbjct: 44 ERNWSETTLKVQTHHTYRFILWATERGLYYAADITRPILERYQ----RYLYQYRKTNGEP 99 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL----NEKQALTLV 138 + R+ + L +K + K+L K+ + + ++ + LPR + +Q L Sbjct: 100 LSTRTQRTQLEPLKVWFKWLTKQNLILANPAADLELPRLEKHLPRYILTIDETEQILAQP 159 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKI 197 D L R+ A++ LL+ G+R E L ++ + T+ I QGKG+K Sbjct: 160 DLTTLQ--------GVRDRALMELLWSTGMRRGELTRLDVYSVDGSRKTVTIRQGKGNKD 211 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRG-KPLNPGVFQRYIRQLRRYLG 255 R++PL + Y L +N + LF + G L + +G Sbjct: 212 RVLPLGERALSWLQRYQQQVRPQLIVNPDVKALFVAMDGLDGLQANGISNLVTAYINAVG 271 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H RH+ AT +L NG DLR IQ++LGH + +TQ+YT V+ + + ++ Sbjct: 272 IEKKGACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRA----LQAVHA 327 Query: 316 QTHPSITQKDKK 327 THP+ D+K Sbjct: 328 STHPAEQMADEK 339 >gi|254462175|ref|ZP_05075591.1| phage integrase [Rhodobacterales bacterium HTCC2083] gi|206678764|gb|EDZ43251.1| phage integrase [Rhodobacteraceae bacterium HTCC2083] Length = 295 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 58/153 (37%), Positives = 77/153 (50%), Gaps = 14/153 (9%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDL 216 A L + YG GLR SE +L +I D+ + + +GK DK R L P + +Y+ Sbjct: 128 AALGISYGAGLRASEVCNLKISDIDSDRMLIHVDEGKNDKDRKAMLSPGSLDLLRDYWR- 186 Query: 217 CPFDLNLNIQLPLFRGIRGKP----LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 + LF G KP L+P R + G+ T HTLRHSFATH Sbjct: 187 -----EARPEGWLFPG---KPKIMALSPRQLNRAFTSAKHMAGINKPATLHTLRHSFATH 238 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 LL G D+R IQ +LGH +LSTT YT+V +K Sbjct: 239 LLEAGTDVRVIQVLLGHSKLSTTARYTHVATKT 271 >gi|77360404|ref|YP_339979.1| integrase [Pseudoalteromonas haloplanktis TAC125] gi|76875315|emb|CAI86536.1| putative integrase [Pseudoalteromonas haloplanktis TAC125] Length = 308 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 65/182 (35%), Positives = 89/182 (48%), Gaps = 46/182 (25%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSVRKAILEYYDL 216 LLYG G+R+ E L L Q+I D + +RI GKG K R+V L+P +R I L Sbjct: 116 LLYGSGMRLMEVLRLRIQDIDFDYNCVRIWDGKGGKNRVVTLAGELIPQIRTQI----QL 171 Query: 217 CPFDLNLNIQLPLFRGIRGKPL--------NPGVFQRYI------------RQLRRY--- 253 L L++ PLF G+ L N + +Y+ +QLRR+ Sbjct: 172 VDNYLQLDLNNPLFCGVYMPHLLRKKYPNHNKQLGWQYLFPSYKLSIDPESKQLRRHHID 231 Query: 254 --------------LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 + T HTLRHSFATHLL +G D+R++Q+ LGH + TTQIYT Sbjct: 232 EKQLQRAVKKAAFNAHINKHVTPHTLRHSFATHLLQSGADIRTVQTQLGHSDIRTTQIYT 291 Query: 300 NV 301 +V Sbjct: 292 HV 293 >gi|253581279|ref|ZP_04858533.1| transposase [Ruminococcus sp. 5_1_39B_FAA] gi|251847433|gb|EES75410.1| transposase [Ruminococcus sp. 5_1_39BFAA] Length = 285 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 70/294 (23%), Positives = 129/294 (43%), Gaps = 28/294 (9%) Query: 12 FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71 F + +E N +++ +R L T+ +Y FL T + I L+ ++ Sbjct: 4 FIMYEEIFNQIRSAANKRNLKDSTIHAYCTSVAHFL---------NRTAKDIDALTTDDV 54 Query: 72 RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131 F+++++ I + SGI+ F K + K+ + ++ +K+ LP L + Sbjct: 55 DIFLTEKKLSGISPETYNHYHSGIRFFYKKILKKNWDDD----DIPRMKRDRKLPTVLTK 110 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 + ++D + ++ A++ +Y GLR+SE L +I T+ I+ Sbjct: 111 AEISAILDATP----------NLKHKAMIATMYSGGLRVSEVTHLHYDDISRTNKTIHIR 160 Query: 192 -GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 GK R L + + EY+ C I P G L ++ R+ Sbjct: 161 DGKSRSDRYTLLADRTLEILTEYWFQCG--RPRGILFP--SSWTGDYLTKDSVIQFFRES 216 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 G+ + H LRHSFA+HL +G D++ IQ++LGH +T+IY +V++K Sbjct: 217 AERAGIQKHVSTHCLRHSFASHLFESGCDIKYIQALLGHRDPKSTEIYLHVSNK 270 >gi|86139634|ref|ZP_01058202.1| integrase/recombinase [Roseobacter sp. MED193] gi|85823817|gb|EAQ44024.1| integrase/recombinase [Roseobacter sp. MED193] Length = 306 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 57/157 (36%), Positives = 78/157 (49%), Gaps = 22/157 (14%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV--------RK 208 A L + YG GLR SE +L +I D+ + ++ GKG K R V L P + R+ Sbjct: 139 AALSISYGAGLRASEVCNLKISDIDSDRMLIHVELGKGQKDRKVMLSPGLLELLRAWWRE 198 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 A E + L P +N P++P R + G+ T HTLRHS Sbjct: 199 ARPEGW-LFPGKPKIN------------PISPRQLSRAFTSAKHMAGVKKPATLHTLRHS 245 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 FATHLL D+R IQ +LGH +L+TT YT+V +K Sbjct: 246 FATHLLEANTDVRVIQVLLGHAKLTTTARYTHVATKT 282 >gi|262274250|ref|ZP_06052061.1| integron integrase IntI4 [Grimontia hollisae CIP 101886] gi|262220813|gb|EEY72127.1| integron integrase IntI4 [Grimontia hollisae CIP 101886] Length = 320 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 65/195 (33%), Positives = 94/195 (48%), Gaps = 41/195 (21%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI 210 + A++ I L+YG GLR+ EA+ L +++ D LRI GKG K RIV L ++ + Sbjct: 118 VPAQHYLISALMYGSGLRLMEAVRLRVKDVDFDYQCLRIFDGKGGKSRIVTLATELQCPL 177 Query: 211 LEYYD-----LCPFDLN----LNIQLP------------------LF-----------RG 232 + D LC D+N + +P LF R Sbjct: 178 KQQIDQVNSILCR-DVNHHNYAGVWMPHRLRQKYASQSKSLPWQYLFPSHKVSIDPETRV 236 Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 IR +N QR I + + T HTLRHSFATHLL +G D+R++Q+ LGH + Sbjct: 237 IRRHHINEKQIQRSINTTAKKANIRKHVTPHTLRHSFATHLLQSGADIRTVQAQLGHSDV 296 Query: 293 STTQIYTNVNSKNGG 307 TTQ+YT++ +NG Sbjct: 297 RTTQVYTHI-LQNGA 310 >gi|312195601|ref|YP_004015662.1| integrase family protein [Frankia sp. EuI1c] gi|311226937|gb|ADP79792.1| integrase family protein [Frankia sp. EuI1c] Length = 422 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 87/168 (51%), Gaps = 8/168 (4%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSVRKAILE 212 R++A+L LLYG G RISEA+ L ++ DQ+T +R++G + R+VPL A+ Sbjct: 223 RSAALLELLYGTGARISEAVGLDLDDLDLDQATASVRLRGGNGRDRVVPLGRCAVAALSL 282 Query: 213 YYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 Y P + +F RG L+ +R G+ + H LRHSFA Sbjct: 283 YLSRGRPVLESAGSGTAVFLSRRGGRLSRQSAWSALRAAAEAAGI-EGVSPHVLRHSFAL 341 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 HLL G D+R +Q +LGH + TTQIYT V + D + E+Y HP Sbjct: 342 HLLDGGADVRVVQELLGHASVRTTQIYTLVPA----DQLREVYAAAHP 385 >gi|310766353|gb|ADP11303.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 351 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 86/319 (26%), Positives = 141/319 (44%), Gaps = 25/319 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF---- 74 ++WL +L G S T+Q Y R FL + E I+ Q+S + ++ Sbjct: 26 ESWLSHLAAA-GRSPRTVQGYGERVRAFLAWC-----EPRGIRYAPQVSLAVLESYQRWL 79 Query: 75 --ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNE 131 K +++ S L+ I+ ++L +R + + + K+ LP + +E Sbjct: 80 QGYRKADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPAQVFSE 139 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 + ++ ++ T RN AIL LL+ G+R SE L ++ + + ++ Sbjct: 140 DETRRVLQSLDAGTP-----PGLRNRAILELLWSSGIRRSELAGLMLSDVDFTRGVVNVR 194 Query: 192 -GKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-R 248 GKG K R+VP+ + + Y D+ P LF +G L G R Sbjct: 195 RGKGGKERVVPVGHAALIWLGRYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGR 254 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 +R L + H RHS AT +L NG D R IQ+ILGH +L TTQIYT V + Sbjct: 255 AIRDGAHLKKAGACHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGH--- 311 Query: 309 WMMEIYDQTHPSITQKDKK 327 + ++ QTHP+ ++ K Sbjct: 312 -LQSVHAQTHPAEKRRTAK 329 >gi|50122330|ref|YP_051497.1| site-specific tyrosine recombinase XerC [Pectobacterium atrosepticum SCRI1043] gi|50122339|ref|YP_051506.1| site-specific tyrosine recombinase XerC [Pectobacterium atrosepticum SCRI1043] gi|49612856|emb|CAG76306.1| probable integrase/recombinase protein [Pectobacterium atrosepticum SCRI1043] gi|49612865|emb|CAG76315.1| probable integrase/recombinase [Pectobacterium atrosepticum SCRI1043] Length = 344 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 59/169 (34%), Positives = 84/169 (49%), Gaps = 7/169 (4%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213 RN A+L +L+ GLR SE L ++ + L + QGKG+K R+VP+ + Y Sbjct: 158 RNRAVLEMLWSTGLRRSELSGLMLADVDVGRGVLVVRQGKGNKDRVVPVGLRALVWVQRY 217 Query: 214 YDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQLRRYLGLPLSTTAHTLRHSFAT 271 D P + LF I GK L R +R L + H RHS AT Sbjct: 218 LDAVRPRLTTKHDSGYLFVTIWGKRLARSTLTILAGRAIRDDAHLKKAGACHVFRHSMAT 277 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 +L G D R IQ+ILGH +L TTQIYT V + + +++++THP+ Sbjct: 278 QMLERGADTRHIQAILGHEKLETTQIYTRVAIGH----LKQVHEKTHPA 322 >gi|295698025|ref|YP_003602682.1| putative Integrase/recombinase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295060137|gb|ADF64874.1| putative Integrase/recombinase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 325 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 65/217 (29%), Positives = 108/217 (49%), Gaps = 20/217 (9%) Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR--ALNEKQALTLVDNVLLHTSHE 148 +L G+ L+ + + +I +RNL+ S LPR AL ++ L S Sbjct: 102 ALKGVAKEAWMLRLMDVESFQHIRAVRNLRGSR-LPRGRALPPEEIRALFGACEADDSS- 159 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 I R++A+L ++ GCGLR SEA+ L +I+ D+ LR+ GKG+K R+ + + Sbjct: 160 ---IGVRDAAMLGVILGCGLRRSEAVGLDLCDIVTDERALRVLGKGNKERLAYMPAGTWQ 216 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIR-------GKPLNPGVFQRYIRQLRRYLGLPLSTT 261 + ++ D D+ PLF IR + + V+ ++ Q+R+ L Sbjct: 217 RLRKWID----DVRGEKDGPLFTRIRRFDTLTNDRLTDQTVY--HVLQVRQRLAGIAKCA 270 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 H LR +FAT +L NG DL +++ +GH ++TTQ Y Sbjct: 271 PHDLRRTFATSMLDNGEDLITVKDAMGHASVTTTQQY 307 >gi|325679322|ref|ZP_08158907.1| phage integrase, N-terminal SAM-like domain protein [Ruminococcus albus 8] gi|324108919|gb|EGC03150.1| phage integrase, N-terminal SAM-like domain protein [Ruminococcus albus 8] Length = 336 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 85/305 (27%), Positives = 140/305 (45%), Gaps = 29/305 (9%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF-----------YTEEKIT------IQT 62 ++L + + +G S T+++Y D R FL +L + + I+ I+ Sbjct: 15 DYLTYMRLVKGRSDRTVEAYYIDLRTFLRYLLINHNDADPNKVEFEDIAISEVPFDYIKK 74 Query: 63 IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122 IR + +++ R I R+ R S +K F YL +K S+ + L K Sbjct: 75 IRLIDAYNYLKWLADERGNSIKTRA--RKTSALKQFYSYLHLKKGLISSDPIEQLELPK- 131 Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 LP+ L + LTL D L + E+ + R+ ++ L CG+R+SE L +I Sbjct: 132 --LPKTL--PKYLTLGDAQKLLAAVESANYE-RDYCMITLFLNCGMRLSELCGLNTDDIS 186 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242 + T+R+ GKG K RIV + + +A+ Y L LF R ++ + Sbjct: 187 FENGTMRLFGKGSKERIVYMNDACVEALKAY--LPRRSAVQTTDKALFLSNRNTRISRRM 244 Query: 243 FQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTN 300 Q + + + GL L T H LRH+ AT + G D ++ ILGH L+TT+IYT+ Sbjct: 245 TQYIVEESLKKAGLGNLGITTHKLRHTAATLMYQYGNVDTLVLKDILGHESLATTEIYTH 304 Query: 301 VNSKN 305 + S+N Sbjct: 305 LTSQN 309 >gi|146297605|ref|YP_001181376.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145411181|gb|ABP68185.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 286 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 77/296 (26%), Positives = 142/296 (47%), Gaps = 26/296 (8%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 +LKE + +L+ + ++ T++SY D F+ + T ++ + + + E ++ Sbjct: 1 MLKEFEEYLKT----QDFTENTIKSYTKDVELFMRWYVDTTGQEFLPENLTEFDLVEYKS 56 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS--NSLPRALNE 131 ++ ++ + ++ RS+ ++ F+ +L R + + ++ +K + N P L++ Sbjct: 57 YLLRKNHK---PSTVNRSIISLRKFVHFLLDRGLLNKDISTRLKQVKDTTRNLSPVVLDK 113 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLR 189 K V H +T R+ A++ LL G+RISEA++L ++ I + + ++ Sbjct: 114 KDIYKFRRTV--HQFGKT-----RDVALVELLLNTGMRISEAINLKLEDVEISERKGKVK 166 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 I GKG R VPL RK + EY P+ + N LF GK L + I+ Sbjct: 167 IWGKGRSYREVPLNSDARKYLSEYLKKRPYSETNY-----LFVTSTGKKLTRNSAYKIIQ 221 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + + GL L H LRH FA L+ G ++ +Q +LGH R+ TT Y N+K Sbjct: 222 KYAKLAGLCLH--PHMLRHFFAQTLIDKGLNIYDVQQLLGHQRIETTLRYKKPNTK 275 >gi|297618199|ref|YP_003703358.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680] gi|297146036|gb|ADI02793.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680] Length = 298 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 65/271 (23%), Positives = 125/271 (46%), Gaps = 23/271 (8%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 ++L+++SY D R FL +L E+ T T L +E R F++ + + ++ R Sbjct: 31 ARLSVESYMGDLRLFLEWLGGRGEDNPTAVT--PLDASEYRRFLADKGYKPA---TINRK 85 Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 + +++F +L++ I ++ + + PR L + L+ V Sbjct: 86 IQSLRAFYGWLQEAGIVPDNPFRRTKAVPAQELAPRWLTRPEQAALMRAVRAKGR----- 140 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRK 208 R+ A++ L+ GL++ E ++L ++++ + + ++ QGKG+K R VPL + R Sbjct: 141 --LRDEAMIALMLFAGLKVGELVALEREDVVVRERSGKVVVRQGKGNKRREVPLNATARD 198 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 + + L N PL+ +G L+ Q+ + Y+ T H LRH+ Sbjct: 199 ILRRW-------LEENPTGPLWPSQKGGRLSKRQVQKIVEDCA-YIAKLKDVTCHKLRHT 250 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 F +LL G + + ++ GH RL T+ YT Sbjct: 251 FCKNLLDAGVSIDQVAAMAGHSRLDVTKRYT 281 >gi|159046242|ref|YP_001541914.1| integrase family protein [Dinoroseobacter shibae DFL 12] gi|157914001|gb|ABV95433.1| phage integrase [Dinoroseobacter shibae DFL 12] Length = 295 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 77/156 (49%), Gaps = 20/156 (12%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYD- 215 A L + YG GLR +E +L +I D+ + + QGKG K R V L P + + + ++ Sbjct: 128 AALSISYGAGLRAAEVCNLKIGDIDSDRMLIHVEQGKGQKDRKVMLSPGLLELLRAWWRE 187 Query: 216 ------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 L P +N P++P R + G+ T HTLRHSF Sbjct: 188 TRPEGWLFPGKPKIN------------PISPRQLNRAFTSAKHMAGVKKPATLHTLRHSF 235 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 ATHLL D+R IQ +LGH +L+TT YT+V +K Sbjct: 236 ATHLLEANTDVRVIQVLLGHAKLTTTARYTHVATKT 271 >gi|259909787|ref|YP_002650143.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|224965409|emb|CAX56941.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96] Length = 351 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 85/319 (26%), Positives = 141/319 (44%), Gaps = 25/319 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++WL +L + G S T+Q Y R FL + E I Q+S + A+ Sbjct: 26 ESWLAHLVVA-GRSPRTVQGYRERVRAFLSWC-----EPRGITYAPQVSLAVLEAYQRWL 79 Query: 79 RTQKIGD------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNE 131 + + D S L+ I+ ++L +R + + + K+ LP + +E Sbjct: 80 QGYRRADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPAQVFSE 139 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 + ++ ++ T RN AIL LL+ G+R SE L ++ + + ++ Sbjct: 140 AETRRVLQSLDAGTP-----PGLRNRAILELLWSSGIRRSELAGLLLSDVDFTRGVVNVR 194 Query: 192 -GKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-R 248 GKG K R+VP+ + + Y D+ P LF +G L G R Sbjct: 195 RGKGGKDRVVPVGHAALMWLGRYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGR 254 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 +R L + H RH+ AT +L NG D R IQ+ILGH +L TTQIYT V + Sbjct: 255 AIREGAHLKKAGACHIFRHTMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGH--- 311 Query: 309 WMMEIYDQTHPSITQKDKK 327 + +++ THP+ ++ +K Sbjct: 312 -LQKVHAHTHPAEKRRTEK 329 >gi|169826676|ref|YP_001696834.1| hypothetical protein Bsph_1094 [Lysinibacillus sphaericus C3-41] gi|168991164|gb|ACA38704.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 280 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 74/274 (27%), Positives = 129/274 (47%), Gaps = 33/274 (12%) Query: 31 LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90 L+ T++ Y+ +Q L YTE + +++ +IR ++ + S+K Sbjct: 20 LAPRTIRGYQLSVKQ----LQDYTE-----KPFNKITKKDIRHWMMVLNEKGYKQNSIKN 70 Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150 L G+K+F +Y + + ++ K + +LPR L++KQ L+++V T Sbjct: 71 KLIGLKTFYQYCFDEGLMIINPAKDIPFPKVAETLPRYLSKKQLTCLLEHVCERLYERT- 129 Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKA 209 I+ +LY G+RISE + + ++I + +++I +GKG++ RIV + Sbjct: 130 --------IIEVLYATGVRISELVKIKKEDINWSERSIQILEGKGNRSRIVLFNLDCAQH 181 Query: 210 ILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + Y D P+ + + R IR + +N +FQ Y +QL T H L Sbjct: 182 LETYLNSRTDKLPY---VFVDKKETRMIRSREIN-TLFQFYSKQL------GFRVTPHML 231 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 RH+FA HL G L IQ +LGH +TQ+Y Sbjct: 232 RHTFAAHLAERGMPLECIQQLLGHETTHSTQLYA 265 >gi|116622057|ref|YP_824213.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116225219|gb|ABJ83928.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 336 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 80/305 (26%), Positives = 143/305 (46%), Gaps = 25/305 (8%) Query: 11 SFELLKERQNWLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69 S LL +++ N L RG S T+++Y + F +FLA + + + + Sbjct: 6 SESLLALTESFFHNYLRQTRGASVHTVRAYRDALKLFYLFLAGQKRKPVANLALDDIQSD 65 Query: 70 EIRAFISKRRTQKIGDRSLKRS--LSGIKSFLKYLKKRKITTESN---ILNMRNLKKSNS 124 + AF+ +++ G+ ++ R+ L+ ++SF+++L + +T IL +RN K Sbjct: 66 ALLAFLDYVESRR-GNSAVTRNCRLAAVRSFVQHLLRHDVTRAGQYGRILAIRNKKALRR 124 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MD 183 + L ++A ++ + + + R+ A+L LY G R+SEAL++ ++ ++ Sbjct: 125 VATYLEPEEARAVIAAIDRRSRN-----GERDHALLLFLYNTGARVSEALAIRASDLQLE 179 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-PGV 242 +R+ GKG K RI PL P A+ + + P + LFR G L GV Sbjct: 180 RPRQVRLLGKGRKERICPLWPETASAL---HRIIPVRSGED---SLFRNTLGALLTRDGV 233 Query: 243 ---FQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 ++Y+R ++ T H +RHS A LL G D+ I+ LGH ++TT Sbjct: 234 AYLLRKYVRSAAQHAPSLRKRRVTPHVMRHSCAVALLQAGIDVSVIRDYLGHASVATTSR 293 Query: 298 YTNVN 302 Y N Sbjct: 294 YITTN 298 >gi|15822601|gb|AAK73287.1| DNA integrase IntIPac [Pseudomonas alcaligenes] Length = 321 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 77/281 (27%), Positives = 125/281 (44%), Gaps = 54/281 (19%) Query: 65 QLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 ++ E+ AF+S ++ + + ++LS I K + + ++ ++ R + Sbjct: 46 EMGGPEVEAFLSDLAVRRDVSASTQNQALSAILFLYKQVLQVELPWMDGVIRAR---RPQ 102 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 LP L ++ +++ + T W+ I LLYG G+R+ E L L +++ Sbjct: 103 RLPVVLTREEVASVLAQL-----DGTLWL------IASLLYGSGMRLMEVLRLRVKDVEF 151 Query: 184 DQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY----------DLCPFDLNLNIQLPLFR- 231 + + I+ GKG K R+ +LP A LE + DL N+ L R Sbjct: 152 ARLEILIRDGKGQKDRVT-MLPRKLAAPLELHLQRVRALHEQDLREGYGRANLPHALARK 210 Query: 232 --------------------------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 GI L+ QR +R R +GL T HTL Sbjct: 211 YPNAAAEWGWQFVFPSVNRSEDPRSGGIFRHHLHEKTIQRAVRNAVRRVGLHKPATPHTL 270 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 RHSFATHLL +G D+R++Q +LGH + TTQIYT+V ++ G Sbjct: 271 RHSFATHLLESGQDIRTVQELLGHADVKTTQIYTHVLNRGG 311 >gi|167969523|ref|ZP_02551800.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis H37Ra] Length = 352 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 63/191 (32%), Positives = 89/191 (46%), Gaps = 18/191 (9%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 K +LP L + QAL + + + + R+ I+ LLY G+R+SE L Sbjct: 3 KARRTLPAVLRQDQALRAM-AAAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVD 61 Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPL 238 +I +R+ GKG+K R VP A+ + D + L G RG+ L Sbjct: 62 DIDTGHRLVRVLGKGNKQRTVPFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRL 121 Query: 239 NPGVFQRYIRQLRRYL--------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290 + +RQ R + G P H LRHS ATHLL G DLR +Q +LGH Sbjct: 122 D-------VRQARTAVHQTVAAVDGAP-DMGPHGLRHSAATHLLEGGADLRVVQELLGHS 173 Query: 291 RLSTTQIYTNV 301 L+TTQ+YT+V Sbjct: 174 SLATTQLYTHV 184 >gi|224023591|ref|ZP_03641957.1| hypothetical protein BACCOPRO_00295 [Bacteroides coprophilus DSM 18228] gi|224016813|gb|EEF74825.1| hypothetical protein BACCOPRO_00295 [Bacteroides coprophilus DSM 18228] Length = 207 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 101/201 (50%), Gaps = 10/201 (4%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 KK LP + E + L+D+ ++ R+ IL + Y G+R SE + L Sbjct: 14 KKKKPLPVFVKEAEMDRLLDDADFGDG----FLGVRDRMILEVFYETGVRRSELIGLNDA 69 Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239 ++ +++ GK +K R++P + + + Y + +++ F G+ L+ Sbjct: 70 DVDFSSCVIKVTGKRNKQRLIPFGEELERDLRVYLSVRDENISERENDAFFVRKDGRRLS 129 Query: 240 PG-VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 PG V+ R L + + L + H LRH+FAT +L++ +L +++ +LGH LSTT++Y Sbjct: 130 PGMVYLLVKRNLTKVVTLK-KKSPHVLRHTFATSMLNHQAELEAVKELLGHESLSTTEVY 188 Query: 299 TNVNSKNGGDWMMEIYDQTHP 319 T+ + + ++Y+Q HP Sbjct: 189 THTTFEE----LKKVYEQAHP 205 >gi|126667008|ref|ZP_01737983.1| hypothetical protein MELB17_05659 [Marinobacter sp. ELB17] gi|126628414|gb|EAZ99036.1| hypothetical protein MELB17_05659 [Marinobacter sp. ELB17] Length = 303 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 58/149 (38%), Positives = 80/149 (53%), Gaps = 10/149 (6%) Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPF- 219 Y GLR+SE+L+LT ++ D +R+ GKG K R VPL KA+ Y+ Sbjct: 134 YSLGLRLSESLNLTIADV--DSHLMRVHVRCGKGKKDRFVPLPLMTLKALRRYWATHRHP 191 Query: 220 DLNLNIQLPLFRGI--RGKP--LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275 DL P + + GKP + G Q+ I+Q+ G+ H+LRHSFATHLL Sbjct: 192 DLLFPGWHPPYASVATSGKPRVMARGGVQKAIKQVALDCGIRKHVHIHSLRHSFATHLLE 251 Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 NG +LRSIQ++LGH TT YT + + Sbjct: 252 NGVNLRSIQTLLGHASPVTTARYTRMTHE 280 >gi|270307506|ref|YP_003329564.1| site-specific recombinase, phage integrase family [Dehalococcoides sp. VS] gi|270153398|gb|ACZ61236.1| site-specific recombinase, phage integrase family [Dehalococcoides sp. VS] Length = 332 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 113/224 (50%), Gaps = 19/224 (8%) Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 ++ F+ +L++ + + N+R K + + N++Q TL+D V L T ++A Sbjct: 101 VRRFINWLRENDQISIDPLKNIRLPKVPRRIIQPFNKEQCQTLLDLVSLPT------LEA 154 Query: 155 R-NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213 R N AIL + G+R E + +++ + T++I GKG K R+V + +KA+LEY Sbjct: 155 RRNKAILMVFMDTGIRCQELADMKLEDLNFETETIKIFGKGAKERVVRISRRTQKALLEY 214 Query: 214 Y---------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAH 263 D CPF ++ R + N G+ +R I L + G+ L + H Sbjct: 215 QFERMKLMPNDKCPFVWVSRLKNRYSRKQSHQLTNDGI-RRMIENLGKKAGIQNLRCSPH 273 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT-NVNSKNG 306 T RH+FAT L NG +QS+LGH L+ T+ YT ++ S+N Sbjct: 274 TFRHTFATMSLLNGAGEFELQSLLGHSTLTMTRRYTASLTSQNA 317 >gi|260062369|ref|YP_003195449.1| tyrosine type site-specific recombinase [Robiginitalea biformata HTCC2501] gi|88783932|gb|EAR15103.1| tyrosine type site-specific recombinase [Robiginitalea biformata HTCC2501] Length = 386 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 79/282 (28%), Positives = 129/282 (45%), Gaps = 36/282 (12%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRS 87 R S+ T+ SY QFL FL EK T+ AF+ + K+ + Sbjct: 101 RRYSESTIASYGTMAAQFLEFLGEKPPEKA--------DQTDAEAFLQWLVLERKVSVST 152 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 ++++S +K +L + + + + +K LP L + + + L+ Sbjct: 153 HRQAISALKQLEAFLPACHLEAKGLV----SPRKDRKLPGVLGKAEVMRLL--------Q 200 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206 +T+ + R + LLYGCGLR+ E ++L + + L ++ GKG K R V +LP Sbjct: 201 QTRNLKHRT--LTALLYGCGLRVGELINLQLAEVDIPRRQLLVRAGKGRKDRRV-VLPER 257 Query: 207 RKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 +L Y L P L G G+ + + +++ R G+ T H Sbjct: 258 LLPLLGDY--------LTAYAPSRYLAEGRPGQQYSATSIRAFLKANSRRAGILKKVTPH 309 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 LRHS+ATHLL G D+R IQ +LGH R TT +YT+V+ ++ Sbjct: 310 MLRHSYATHLLEQGVDIRYIQELLGHARPETTMVYTHVSRQD 351 >gi|229115620|ref|ZP_04245025.1| Integrase/recombinase [Bacillus cereus Rock1-3] gi|228667762|gb|EEL23199.1| Integrase/recombinase [Bacillus cereus Rock1-3] Length = 305 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 77/304 (25%), Positives = 140/304 (46%), Gaps = 16/304 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +++L++ E+ GL+ T+QSY +F +L +E I I+ I + SK Sbjct: 9 KDYLEDKELS-GLAPRTIQSYGDTLNEFSRWLVA-EKEIINIEDITPPVIKGYLLYCSKE 66 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKIT-TESNILNMRNLKKSNSLPRALNEKQALTL 137 R + R+ K L +K+F +YL+ I SN N K++ + +++Q + Sbjct: 67 RGNTVVTRNGK--LQHLKTFFRYLEDEDIIEIRSNPTNKIKPAKTDKTIKVYSDEQIKQM 124 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 + S E R ++ +L G G+R+ E +S+ ++ T+ I GK K Sbjct: 125 LRYYRRMRSRENTLYSYRGHTVIVVLAGTGIRLGELVSMRWDSVDLLNKTITIFGKNRKS 184 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLG 255 PL V + + E+ C I+LP +F RG PL + +L +G Sbjct: 185 LSTPLTDKVARELYEWRLFCE---KYYIKLPAHVFNDHRGNPLTVNAVKLMFTRLSVRMG 241 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 TTAH RH++A++ L G D+ ++ ++ H ++ TT++Y + G+ + E D Sbjct: 242 F--KTTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHA----FGNSLAESND 295 Query: 316 QTHP 319 + +P Sbjct: 296 KYNP 299 >gi|37527448|ref|NP_930792.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|37527457|ref|NP_930801.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786883|emb|CAE15952.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786892|emb|CAE15961.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 376 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 78/312 (25%), Positives = 134/312 (42%), Gaps = 28/312 (8%) Query: 28 ERGLSKLTLQSYECDTRQFLIFL---AFYTEEKITIQTIRQLSYTEIRAFISKRRT--QK 82 ER S+ TL+ T F+++ Y IT + + R R+T + Sbjct: 44 ERNWSESTLKVQTHHTYHFILWATERGLYYAADITRPILERYQ----RYLYQYRKTNGEP 99 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL----NEKQALTLV 138 + R+ + L +K + K+L K+ + + ++ + LPR + +Q L Sbjct: 100 LSTRTQRTQLEPLKVWFKWLTKQNLILANPAADIELPRLEKHLPRYILTIDETEQILAQP 159 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKI 197 D L R+ A++ LL+ G+R E L ++ + T+ I QGKG+K Sbjct: 160 DLTTLQ--------GVRDRALMELLWSTGMRRGELTRLDVYSVDGKRKTVTIRQGKGNKD 211 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRG-KPLNPGVFQRYIRQLRRYLG 255 R++PL + Y L +N + LF + G L + +G Sbjct: 212 RVLPLGERALSWLQRYQQQVRPQLIVNPDVKALFVAMDGLDGLQANGISNLVTAYINAVG 271 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H RH+ AT +L NG DLR IQ++LGH + +TQ+YT V+ + + ++ Sbjct: 272 IEKKGACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRA----LQAVHA 327 Query: 316 QTHPSITQKDKK 327 THP+ D+K Sbjct: 328 STHPAEQMADEK 339 >gi|229144736|ref|ZP_04273135.1| Integrase/recombinase [Bacillus cereus BDRD-ST24] gi|228638697|gb|EEK95128.1| Integrase/recombinase [Bacillus cereus BDRD-ST24] Length = 305 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 80/308 (25%), Positives = 140/308 (45%), Gaps = 24/308 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE----EKITIQTIRQLSYTEIRAF 74 +++L++ E+ GL+ T+QSY +F +L E E IT Q I+ + Sbjct: 9 KDYLEDKELS-GLAPRTIQSYGDTLNEFSRWLVAEKEIINIEDITPQVIKGYL-----LY 62 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT-TESNILNMRNLKKSNSLPRALNEKQ 133 SK R + R+ K L +K+F +YL+ I SN N K++ + +++Q Sbjct: 63 CSKERGNTVVTRNGK--LQHLKTFFRYLEDEDIIEIRSNPTNKIKPAKTDKAIKVYSDEQ 120 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 ++ S E R I+ L G G+R+ E +S+ ++ T+ I GK Sbjct: 121 IKQMLRYYRRMRSRENTLYSYRGHTIIVALAGTGIRLGELVSMRWDSVDLLNKTITIFGK 180 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLR 251 K PL V + + E+ C I+LP +F RG PL + +L Sbjct: 181 NRKSLSTPLTDKVARELYEWRLFCE---KYYIKLPAHVFNDHRGNPLTVNAVKLMFTRLS 237 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 +G TTAH RH++A++ L G D+ ++ ++ H ++ TT++Y + G+ + Sbjct: 238 LRMGF--KTTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHA----FGNSLA 291 Query: 312 EIYDQTHP 319 E D+ +P Sbjct: 292 ESNDKYNP 299 >gi|146296464|ref|YP_001180235.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410040|gb|ABP67044.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 286 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 77/294 (26%), Positives = 139/294 (47%), Gaps = 26/294 (8%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 +LKE + +L+ + ++ T++SY D F+ + T ++ + + + E ++ Sbjct: 1 MLKEFEEYLKT----QDFTENTIKSYTKDVELFMRWYIDTTGQEFLPENLTEFDLVEYKS 56 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS--NSLPRALNE 131 ++ + Q + ++ RS+ ++ F+ +L R + + ++ +K + N P L++ Sbjct: 57 YLLR---QNLRPSTVNRSIISLRKFVHFLLDRGLLKKDISTRLKQVKDTTRNLSPVVLDK 113 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLR 189 K T H+ + AR+ A + LL G+RISEA++L ++I + + ++ Sbjct: 114 KDIYKF-----RRTVHQ--FGKARDIAFVELLLNTGMRISEAINLKLEDIEISERKGKVK 166 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 I GKG R VPL RK + EY P+ + N LF GKPL + I Sbjct: 167 IWGKGRSYREVPLNSDARKYLSEYLKKRPYSETNY-----LFVTSTGKPLTRNTAYKIIL 221 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + + + L H LRH FA L+ G +L +Q +LGH R+ TT Y N Sbjct: 222 KYAKLASVDLH--PHMLRHFFAQTLIDKGLNLYDVQQLLGHQRIETTLRYKKPN 273 >gi|325107724|ref|YP_004268792.1| integrase family protein [Planctomyces brasiliensis DSM 5305] gi|324967992|gb|ADY58770.1| integrase family protein [Planctomyces brasiliensis DSM 5305] Length = 303 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 72/271 (26%), Positives = 125/271 (46%), Gaps = 28/271 (10%) Query: 37 QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96 + + D R+F + A E+ + + T+ + F+ K + Q + ++ RSL ++ Sbjct: 37 RGFVLDLRKFAGWFAEANGERFEVGRVTTRDITDFKTFLRKDKGQAVA--TINRSLVTLR 94 Query: 97 SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156 F +L +R + + ++ LK+ P+ L+ + L+ + L D R Sbjct: 95 RFFGWLAERGTVSLNPAKPVKELKRQQLAPKGLDRTEVRKLLREIELRN-------DLRA 147 Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQS----TLRIQGKGDKIRIVPLLPSVRKAILE 212 AI ++ G R+S+ ++L ++M + T R+ GKG+K R+VPL R+++ Sbjct: 148 GAIFSVMLYTGCRVSDLVTLELTDLMIGERKGSVTFRL-GKGNKQRVVPLPLPARQSLRA 206 Query: 213 YYDL---CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 Y D P DL +F G RG + GV + + +G+ L T H RH+ Sbjct: 207 YLDSRPPIPSDL-------VFVGERGPLTDKGV-RALCDKYSAIIGVKL--TPHLFRHTM 256 Query: 270 ATHLLS-NGGDLRSIQSILGHFRLSTTQIYT 299 A L+ N DL + ILGH L+TT YT Sbjct: 257 AHQFLADNENDLVGLAQILGHENLNTTARYT 287 >gi|157165114|ref|YP_001466903.1| hydrogenase expression/formation protein [Campylobacter concisus 13826] gi|112800281|gb|EAT97625.1| site-specific recombinase, phage integrase family [Campylobacter concisus 13826] Length = 354 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 97/187 (51%), Gaps = 12/187 (6%) Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 K LP + E++ +D + + K RN I+ ++ G+R+SEAL+L ++ Sbjct: 160 KGQKLPEFMGEEEVKKFLDAI---EESDFKQNSNRNKLIIKVIIFTGIRVSEALNLKRKD 216 Query: 181 IMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGKP 237 I +D +RI+GKG+K RIV +++ ++E + L +N +N + LF +G Sbjct: 217 ITEDGDLFIIRIRGKGNKYRIVM----IKRHLIEAH-LNAIAINYINKEGYLFINKKGTR 271 Query: 238 LNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 L R + Q+ G+ AH LRH+FAT L DL +Q LGH L+T++ Sbjct: 272 LTQAYVSRIVEQILFKAGIRKEKNGAHMLRHTFATMLYKKQKDLVLVQEALGHASLNTSR 331 Query: 297 IYTNVNS 303 IYT+ +S Sbjct: 332 IYTHFDS 338 >gi|88813691|ref|ZP_01128918.1| Integron integrase [Nitrococcus mobilis Nb-231] gi|88789045|gb|EAR20185.1| Integron integrase [Nitrococcus mobilis Nb-231] Length = 320 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 82/317 (25%), Positives = 139/317 (43%), Gaps = 62/317 (19%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRS 87 R S T Q+Y R+F++F + R + E+ F+S T+ + + Sbjct: 18 RHYSIRTEQAYLGWIRRFILFH--------RKRHPRDMGAPEVERFLSALATEYNVAAST 69 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 ++LS I +L + + E L+ ++ K+ LP L ++ + +VL H Sbjct: 70 QNQALSAIL----FLYREVLGIELPWLDGVKRAKRPQRLPVVLTREE----IRSVLAH-- 119 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPS 205 + RN+ + LLYG GLR+ E + L +++ D+ + ++ GKG + R+ L S Sbjct: 120 -----LQGRNALMASLLYGAGLRLLECVRLRVKDVELDRRQIVVRDGKGGRDRVTLLPES 174 Query: 206 VRKAILEYYDL----------------------------CPFDLNLNIQLPLFR------ 231 +R ++ E D P + P + Sbjct: 175 MRPSLEEQIDRVREIHNQDLTDGFGAVWLPHALARKYPNAPREFGWQYVFPSAKRSTDPR 234 Query: 232 -GIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289 G RG+ ++ QR ++Q R G+ + HT RHSFATHLL G +R+IQ +LGH Sbjct: 235 SGRRGRHHIDEQTLQRAVKQAVRAAGVSKPASCHTFRHSFATHLLEAGYGIRTIQELLGH 294 Query: 290 FRLSTTQIYTNVNSKNG 306 ++TT IYT+V + G Sbjct: 295 RDVNTTMIYTHVANCGG 311 >gi|325916803|ref|ZP_08179054.1| integron integrase [Xanthomonas vesicatoria ATCC 35937] gi|325536954|gb|EGD08699.1| integron integrase [Xanthomonas vesicatoria ATCC 35937] Length = 339 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 57/177 (32%), Positives = 84/177 (47%), Gaps = 37/177 (20%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRK------------ 208 LLYG G+R+ E L L +++ D + + ++ GKG K R VPL S+++ Sbjct: 141 LLYGSGMRLLECLRLRIKDVDDARGEIVVRDGKGGKDRRVPLPRSLKEVLQRQRERALLL 200 Query: 209 ----------------AILEYYDLCPFDLNLNIQLPLFRGIRG--------KPLNPGVFQ 244 A+ Y + P R R ++ V Q Sbjct: 201 HAADLAAGTGRVFLPHALARKYPNAGAEPGWQYLFPSARQSRDPRSGRVGRHHVSEEVLQ 260 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 R ++ RR+ G+ T HTLRHSFATHLL G D+R++Q +LGH ++TTQIYT+V Sbjct: 261 RAVQMARRHAGIVKPATCHTLRHSFATHLLEAGHDIRTVQELLGHKDVATTQIYTHV 317 >gi|291526988|emb|CBK92574.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] Length = 280 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 68/292 (23%), Positives = 129/292 (44%), Gaps = 28/292 (9%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 + +E N +Q+ +R L T+ +Y FL T + I L+ ++ Sbjct: 1 MYEEIFNQIQSAANKRNLKDSTIHAYCTSVAHFL---------NHTAKDIDALTTDDVDI 51 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 F+++++ I + SGI+ F K + K+ + ++ +K+ LP L + + Sbjct: 52 FLTEKKLSGISPETYNHYHSGIRFFYKKILKKNWDDD----DIPRMKRDRKLPTVLTKTE 107 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-G 192 ++D + ++ A++ +Y GLR+SE L +I + + I+ G Sbjct: 108 ISAILDAT----------PNLKHKAMIATMYSGGLRVSEVTHLHYDDISRTKKNIHIRDG 157 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 K R L + + EY+ C I P G L ++ R+ + Sbjct: 158 KSRSDRYTLLADRTLEILTEYWFQCG--RPRGILFP--SSWTGDYLTKDSVIQFFRESAK 213 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 G+ + H LRHSFA+HL +G D++ IQ++LGH +T++Y +V++K Sbjct: 214 RAGIQKHVSTHCLRHSFASHLFESGCDVKYIQALLGHRDPKSTEVYLHVSNK 265 >gi|157164045|ref|YP_001467592.1| transport protein [Campylobacter concisus 13826] gi|112801157|gb|EAT98501.1| site-specific recombinase, phage integrase family [Campylobacter concisus 13826] Length = 353 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 97/187 (51%), Gaps = 12/187 (6%) Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 K LP + E++ +D + + K RN I+ ++ G+R+SEAL+L ++ Sbjct: 160 KGQKLPEFMGEEEVKKFLDAI---EESDFKQNSNRNKLIIKVIIFTGIRVSEALNLKRKD 216 Query: 181 IMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGKP 237 I +D +RI+GKG+K RIV +++ ++E + L +N +N + LF +G Sbjct: 217 ITEDGDLFIIRIRGKGNKYRIVM----IKRHLIEAH-LNAIAINYINKEGYLFINKKGTR 271 Query: 238 LNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 L R + Q+ G+ AH LRH+FAT L DL +Q LGH L+T++ Sbjct: 272 LTQAYVSRIVEQILFKAGIRKEKNGAHMLRHTFATMLYKKQKDLVLVQEALGHASLNTSR 331 Query: 297 IYTNVNS 303 IYT+ +S Sbjct: 332 IYTHFDS 338 >gi|88797010|ref|ZP_01112600.1| tyrosine recombinase [Reinekea sp. MED297] gi|88779879|gb|EAR11064.1| tyrosine recombinase [Reinekea sp. MED297] Length = 317 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 65/230 (28%), Positives = 102/230 (44%), Gaps = 10/230 (4%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 L + SFLK L ++ R + LP+ + + + + L+ + Sbjct: 89 LMAVTSFLKCLYYHEMIASDFYTKFRLPRVRKRLPKTIPDVEQI----EQLIRQTMTKGA 144 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI 210 I R+ AIL L Y R +E +L ++I + T+ I +GKGD+ R+VP+ I Sbjct: 145 IGLRDRAILELFYASAPRRAELANLDIRDIDFKRGTVTIHKGKGDQDRVVPVGERALFWI 204 Query: 211 LEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 Y D L P L+ LF G GK + + + + + H LRH+ Sbjct: 205 KSYLDKLRPLHARLDSGEALFLGTTGKRIRKSTLTDLVHEYILRSAVADKGSCHLLRHTT 264 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 TH+ NG +LR +Q LGH TT+IYT+V ++ + Y THP Sbjct: 265 PTHMHRNGAELRDLQEFLGHEDPKTTEIYTHVTIRD----LKRTYKSTHP 310 >gi|86145355|ref|ZP_01063686.1| hypothetical protein MED222_05540 [Vibrio sp. MED222] gi|85836932|gb|EAQ55052.1| hypothetical protein MED222_05540 [Vibrio sp. MED222] Length = 160 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 58/156 (37%), Positives = 86/156 (55%), Gaps = 20/156 (12%) Query: 167 GLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223 GLR+ E L+LT +I D T+R+ +GKG K R+VPL KA+ ++ L Sbjct: 2 GLRLGEGLNLTVHDI--DSQTMRVHIREGKGGKDRMVPLPLRTLKALRTHW--------L 51 Query: 224 NIQLP--LFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 + + P LF G+ GK P++ G Q+ ++ + + + + H+LRH FATHLL G Sbjct: 52 SHKHPRLLFPGL-GKGDDAPMDRGGIQKTMKLVLKECDIQKHASPHSLRHCFATHLLEQG 110 Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 DLRS+Q++LGH L+TT YT + D M I Sbjct: 111 LDLRSLQTLLGHASLNTTARYTRMTQIKQRDAAMAI 146 >gi|295087379|emb|CBK68902.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 351 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 111/225 (49%), Gaps = 17/225 (7%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALN-EKQALTLVDNVLLHTSHET 149 LS ++ FLKYL R I+ S L N+ + NS + + KQA+ +VLL ++ Sbjct: 92 LSALRVFLKYLSFRDISYMSVFLQAENVPNEKNSKRKVIGLSKQAV----DVLLSMPNQG 147 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSVR 207 I R+ ++ LLY +RI+E L+L NI+ D + + + GKG K R +PLL Sbjct: 148 STIGFRDYTLMLLLYSTAVRINELLTLKISNIVIDCVKPHIIVIGKGRKKRPIPLLAKPA 207 Query: 208 KAILEY---YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-----RRYLGLPLS 259 + + Y Y D N + +GI P++ + +++ R +P+ Sbjct: 208 QCLKRYLIKYHPKQNDANALLFCSKSKGIYV-PMSAENVNKMLKKYATMAHERCQDVPMD 266 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 AH RH+ A+H L NG ++ I +LGH + TT +Y ++ +K Sbjct: 267 LHAHQFRHAKASHWLENGMNIAQISYLLGHESIQTTMVYLDITTK 311 >gi|296450797|ref|ZP_06892548.1| integrase/recombinase [Clostridium difficile NAP08] gi|296260358|gb|EFH07202.1| integrase/recombinase [Clostridium difficile NAP08] Length = 280 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 58/207 (28%), Positives = 103/207 (49%), Gaps = 15/207 (7%) Query: 99 LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158 L+++ KR + + + +K+ SLP L+ ++ N +L + K+ A Sbjct: 73 LRFMYKRVLKLNWDEDEIPRMKRDRSLPTVLSREEV-----NAILDVTTNLKY-----KA 122 Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL-EYYDLC 217 I ++Y GLR+SEA L +I ++ I+ +++ +L IL +Y+ C Sbjct: 123 IFAVMYSGGLRVSEATHLHYDDISRSNHSIHIRNTKNRMDRYTILADRTLDILTQYWFQC 182 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 NI P G+ L+ + +R+ G+P T+H RHSFA+HLL +G Sbjct: 183 --QRPRNILFP--SQTTGEYLDISAVNQVLRRSSERAGIPKHVTSHAFRHSFASHLLEDG 238 Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSK 304 D++ IQ++LGH +T+IY +V++K Sbjct: 239 CDIKYIQALLGHLDPKSTEIYLHVSNK 265 >gi|54308529|ref|YP_129549.1| putative integrase [Photobacterium profundum SS9] gi|46912958|emb|CAG19747.1| putative integrase [Photobacterium profundum SS9] Length = 295 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 106/224 (47%), Gaps = 30/224 (13%) Query: 99 LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158 L++ + + E L++ +S LP + +Q L+ TK R Sbjct: 79 LQFFYRHTLEKEWQWLDIVKPPQSKKLPDIITAQQVALLIS--------MTK--QKRYQI 128 Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYD 215 LY GLR+ E LSLT +I DQ T+++ GKG K R+VP+ A+ ++ Sbjct: 129 FFLTLYTMGLRLGEGLSLTVHDI--DQHTMQVHIRDGKGGKDRLVPVPQRTLNALRAHW- 185 Query: 216 LCPFDLNLNIQLP--LFRGIRG----KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 L + P +F G +G P++ G Q+ ++ + + G+ + H+LRH F Sbjct: 186 -------LTHRHPRLIFPG-KGCNTDNPMDRGGVQKAMKLVLKDCGINKPISPHSLRHCF 237 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 ATHLL G DLRS+Q +LGH L+TT YT + D + I Sbjct: 238 ATHLLEQGLDLRSLQILLGHASLNTTARYTRMTQIKQRDAALAI 281 >gi|227461227|gb|ACP39554.1| putative integron integrase [uncultured microorganism] Length = 347 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 82/293 (27%), Positives = 128/293 (43%), Gaps = 53/293 (18%) Query: 51 AFYTEEKITIQTIRQ---LSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRK 106 A++ E I IR +S E+ AF++ Q ++ + ++LS L +L + Sbjct: 66 AYWIERYIRFHGIRHPQTMSGPEVEAFLTDLAVQGRVAASTQNQALSA----LLFLYREV 121 Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166 + E +L+ + +P L+ + L+ + + E + AR L+YG Sbjct: 122 LRMEIGMLDAVRANRPKRVPAVLSVPEIRALLAGIDHLPTTEPYGLMAR------LMYGA 175 Query: 167 GLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI---------LEYYDL 216 GLR+ E L +++ ++ L + +GKGDK R V L + R + L DL Sbjct: 176 GLRLMECCRLRVKDVDLERGQLTVREGKGDKDRYVMLPAAARDGLGRQRAWRRSLHERDL 235 Query: 217 C--------PF---------DLNLNIQLPLFRGIR----------GKP-LNPGVFQRYIR 248 P D L Q LF R G+ ++ QR + Sbjct: 236 TRGYGRVELPHALHRKYLHADCELGWQF-LFASTRMSHDPRTGEIGRHHVHDSAVQRAMT 294 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + R LG T HTLRHSFATHLL G D+R++Q +LGH + TT IYT+V Sbjct: 295 TVVRQLGWTKRVTCHTLRHSFATHLLEQGQDIRTVQELLGHSDVRTTMIYTHV 347 >gi|255012873|ref|ZP_05284999.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7] Length = 231 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 109/226 (48%), Gaps = 12/226 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E+ LS ++ +Y D + L F +EK + ++++SY +++ FI++ R I Sbjct: 15 LRLEKSLSANSIDAYLTDLDKLL---RFAEDEK---KDVKEISYDDLQQFIAQLRDIGIH 68 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 RS R +SGIKSF ++L T + + K LP L + +++D + L Sbjct: 69 PRSQARIISGIKSFYRFLLLDNYITNDPTELLESPKIGLKLPEVLTVNEINSILDTIDLT 128 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 RN A+L +LY CGLR+SE L +I + +R++GKG K R+VP+ Sbjct: 129 LPE-----GQRNRAMLEVLYSCGLRVSELTGLRYSDIYPKEGFIRVEGKGSKQRLVPISE 183 Query: 205 SVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 + I Y YD + + LF RG L+ + I+Q Sbjct: 184 VALREIKNYLYDRNSVVVKKGFEDILFLSRRGTALSRIMVFHIIKQ 229 >gi|265753910|ref|ZP_06089265.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263235624|gb|EEZ21148.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 342 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 111/225 (49%), Gaps = 17/225 (7%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALN-EKQALTLVDNVLLHTSHET 149 LS ++ FLKYL R I+ S L N+ + NS + + KQA+ +VLL ++ Sbjct: 83 LSALRVFLKYLSFRDISYMSVFLQAENVPNEKNSKRKVIGLSKQAV----DVLLSMPNQG 138 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSVR 207 I R+ ++ LLY +RI+E L+L NI+ D + + + GKG K R +PLL Sbjct: 139 STIGFRDYTLMLLLYSTAVRINELLTLKISNIVIDCVKPHIIVIGKGRKKRPIPLLAKPA 198 Query: 208 KAILEY---YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-----RRYLGLPLS 259 + + Y Y D N + +GI P++ + +++ R +P+ Sbjct: 199 QCLKRYLIKYHPKQNDANALLFCSKSKGIYV-PMSAENVNKMLKKYATMAHERCQDVPMD 257 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 AH RH+ A+H L NG ++ I +LGH + TT +Y ++ +K Sbjct: 258 LHAHQFRHAKASHWLENGMNIAQISYLLGHESIQTTMVYLDITTK 302 >gi|327537427|gb|EGF24153.1| Integrase, integron-type [Rhodopirellula baltica WH47] Length = 408 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 62/180 (34%), Positives = 86/180 (47%), Gaps = 37/180 (20%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVP----LLPSVRKAI--- 210 I LLYGCG+RISEA L ++I + I Q KG+K R+VP L+ +R+ + Sbjct: 200 IAKLLYGCGMRISEAHRLRVKDIDFANKQIEIRQSKGNKSRLVPMPDDLIEPLRRFVKTR 259 Query: 211 --LEYYDLC--------PFDLN---------LNIQL----------PLFRGIRGKPLNPG 241 L +DL P+ L+ L Q P I L+ Sbjct: 260 EALHEHDLANGTASVYLPYALDRKYPSAHRELKWQYLFASHRLSRDPRTGRIHRHHLHAS 319 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 F ++R+ G+ T+HT RH FATHLL G D+R IQ +LGH + TT+IYT+V Sbjct: 320 TFPTHLRRAVEQAGILKHVTSHTFRHCFATHLLWQGTDIRQIQQLLGHSDVKTTEIYTHV 379 >gi|164688594|ref|ZP_02212622.1| hypothetical protein CLOBAR_02239 [Clostridium bartlettii DSM 16795] gi|164603007|gb|EDQ96472.1| hypothetical protein CLOBAR_02239 [Clostridium bartlettii DSM 16795] Length = 295 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 73/304 (24%), Positives = 139/304 (45%), Gaps = 12/304 (3%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 +K + +L +E + LSK T+ SY D ++++ +L E I + + + +I ++ Sbjct: 1 MKVLEEYLNYIEKNKKLSKNTVASYNRDLKKYVEYL---NERNINLSDVVE---NDIISY 54 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 + + + I S+ R +S IKS+ YL KI N++ K L E + Sbjct: 55 LIELEKEDISVASISRMISSIKSYHDYLFFNKILDTDPSKNIKKPKVKRVDVEILTEDEV 114 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 L+ L T R+ AI +LYG G++++E + + +++ D + G G Sbjct: 115 DKLLKFEDLSTPKRI-----RDKAIFEILYGTGIKVTELIDMNLEDV-DLEIDYIYCGSG 168 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 R++PL + +L+Y + +L + LF +G+ + I++ + Sbjct: 169 KNQRVIPLCETTEFYLLKYINESRNELTYPEEKALFVNAQGQRFTRQGLWKLIKKYAKEA 228 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 + + LR+SFA HLL+ G ++ + ILG+ LS+ Q+Y KN + E + Sbjct: 229 DINKNINPTVLRNSFAIHLLNGGANVAVVNKILGNSNLSSLQLYLKHIDKNLRKEIKEKH 288 Query: 315 DQTH 318 + H Sbjct: 289 PREH 292 >gi|149198071|ref|ZP_01875119.1| phage integrase [Lentisphaera araneosa HTCC2155] gi|149198416|ref|ZP_01875461.1| phage integrase [Lentisphaera araneosa HTCC2155] gi|149200078|ref|ZP_01877103.1| phage integrase [Lentisphaera araneosa HTCC2155] gi|149136836|gb|EDM25264.1| phage integrase [Lentisphaera araneosa HTCC2155] gi|149138422|gb|EDM26830.1| phage integrase [Lentisphaera araneosa HTCC2155] gi|149138983|gb|EDM27388.1| phage integrase [Lentisphaera araneosa HTCC2155] Length = 294 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 108/226 (47%), Gaps = 30/226 (13%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 ++K + F +Y+ KR E L + + + SLP L++ D LL S Sbjct: 67 TVKMDRCALSFFYQYVLKR----EWKWLEIVRIPRVKSLPDILSQ-------DETLLILS 115 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPS 205 H K AR L +Y GLRISE + + +I D+ L ++ KG K R+VPL P Sbjct: 116 HLEK---ARYRTCLTAIYSMGLRISEGVRIQTGDICKDRMRLHVRNSKGYKDRLVPL-PQ 171 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP---------LNPGVFQRYIRQLRRYLGL 256 V +L Y + ++ N L LF GK ++ G Q + GL Sbjct: 172 VTYQMLRDY----WVMHRN-PLLLFPRYAGKSRSNSKTTLHMDKGGVQSAFKAALADSGL 226 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + H+LRHS+ATHL+ G +LR IQ ILGH +TT IY++++ Sbjct: 227 AKQVSVHSLRHSYATHLVEAGVNLRVIQEILGHSSPATTAIYSHLS 272 >gi|54303359|ref|YP_133352.1| hypothetical protein PBPRB1692 [Photobacterium profundum SS9] gi|46916789|emb|CAG23552.1| hypothetical protein PBPRB1692 [Photobacterium profundum SS9] Length = 295 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 106/224 (47%), Gaps = 30/224 (13%) Query: 99 LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158 L++ + + E L++ +S LP + +Q L+ TK R Sbjct: 79 LQFFYRHTLEKEWQWLDIVKPPQSKKLPDIITAQQVALLIS--------MTK--QKRYQI 128 Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYD 215 LY GLR+ E LSLT +I DQ T+++ GKG K R+VP+ A+ ++ Sbjct: 129 FFLTLYTMGLRLGEGLSLTVHDI--DQHTMQVHIRDGKGGKDRLVPVPQRTLNALRAHW- 185 Query: 216 LCPFDLNLNIQLP--LFRGIRG----KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 L + P +F G +G P++ G Q+ ++ + + G+ + H+LRH F Sbjct: 186 -------LTHRHPRLIFPG-KGCNTDNPMDRGGVQKAMKLVLKDCGINKPISPHSLRHGF 237 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 ATHLL G DLRS+Q +LGH L+TT YT + D + I Sbjct: 238 ATHLLEQGLDLRSLQILLGHASLNTTARYTRMTQIKQRDAALAI 281 >gi|54303070|ref|YP_133063.1| hypothetical protein PBPRB1396 [Photobacterium profundum SS9] gi|46916498|emb|CAG23263.1| hypothetical protein PBPRB1396 [Photobacterium profundum SS9] Length = 295 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 106/224 (47%), Gaps = 30/224 (13%) Query: 99 LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158 L++ + + E L++ +S LP + +Q L+ TK R Sbjct: 79 LQFFYRHTLEKEWQWLDIVKPPQSKKLPDIITAQQVALLIS--------MTK--QKRYQI 128 Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYD 215 LY GLR+ E LSLT +I DQ T+++ GKG K R+VP+ A+ ++ Sbjct: 129 FFLTLYTMGLRLGEGLSLTVHDI--DQHTMQVHIRDGKGGKDRLVPVPQRTLNALRAHW- 185 Query: 216 LCPFDLNLNIQLP--LFRGIRG----KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 L + P +F G +G P++ G Q+ ++ + + G+ + H+LRH F Sbjct: 186 -------LTHRHPRLIFPG-KGCNTDNPMDRGGVQKAMKLVLKDCGINKPISPHSLRHCF 237 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 ATHLL G DLRS+Q +LGH L+TT YT + D + I Sbjct: 238 ATHLLEQGLDLRSLQILLGHASLNTTARYTRMTQIKQRDAALAI 281 >gi|153930897|ref|YP_001385278.1| phage integrase family integrase/recombinase [Clostridium botulinum A str. ATCC 19397] gi|152926941|gb|ABS32441.1| integrase/recombinase, phage integrase family [Clostridium botulinum A str. ATCC 19397] Length = 331 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 80/279 (28%), Positives = 135/279 (48%), Gaps = 29/279 (10%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 GLS TL++Y+ + IF + + TI + ++R F++ +R + + S+ Sbjct: 70 GLSLKTLKNYKYN---LAIFADYLRKPLATINAM------DLRMFLA-QRCKHMKASSVN 119 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 +S +KSF +L + ++ L ++ K+ + ALNE++ +L + ET Sbjct: 120 GQISILKSFFGWLHMEEYIPKNPSLKLKQTKQPKRVRHALNEEEI------EILRQACET 173 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 R A++ L G R+SE + + +I ++ +L + GKGDK R V + K Sbjct: 174 D----REKALIEFLISTGCRLSEVIGVNKTDIDWNEMSLFVIGKGDKERKV-YFNTKAKI 228 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKP---LNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 +L+ Y L D N+ LF + KP L QR I+ + + S H R Sbjct: 229 LLKKYLLTRSDENI----ALFVTSK-KPHNRLGGRSIQREIKNIAIRAKIDKSIYPHLFR 283 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 HSFATH L++G L IQ ++GH STTQ+Y ++ +N Sbjct: 284 HSFATHKLNSGMPLPVIQHLMGHENPSTTQVYAELSEEN 322 >gi|88704224|ref|ZP_01101938.1| site-specific recombinase IntIA [Congregibacter litoralis KT71] gi|88701275|gb|EAQ98380.1| site-specific recombinase IntIA [Congregibacter litoralis KT71] Length = 330 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 66/197 (33%), Positives = 105/197 (53%), Gaps = 38/197 (19%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR--IVP--LLPSVRKAILEY 213 ++ L+YG G+R +E LSL ++I D + + ++ GKG+K R ++P L+P++++ I Sbjct: 133 MVALMYGSGMRSAELLSLRVKDIDFDSNNIIVRSGKGNKDRSTMLPQRLVPALKRQICTV 192 Query: 214 YDLCPFDLNLN---IQLP------------------LFRGIR-GKPLNPGVFQRY----- 246 L DL + LP LF R G+ GV +R+ Sbjct: 193 ELLHAQDLADGFGAVYLPDALERKYPNAAEETAWQFLFPASRIGRDPRSGVLRRHHLHPT 252 Query: 247 --IRQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 RQ+RR + G+ +H+ RHSFATHLL +G DLR+IQ +LGH ++TT+IYT+V Sbjct: 253 ALTRQIRRAVRNAGIHKPARSHSFRHSFATHLLEDGYDLRTIQELLGHSDITTTEIYTHV 312 Query: 302 NSKNGGDWMMEIYDQTH 318 ++ GG ++ D H Sbjct: 313 VNR-GGRGVVSPTDALH 328 >gi|159901675|ref|YP_001547921.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779] gi|159894714|gb|ABX07793.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779] Length = 291 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 82/294 (27%), Positives = 131/294 (44%), Gaps = 36/294 (12%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 RQ + +++I RGLS T +Y RQ + F T +LS ++R + Sbjct: 6 RQRMIDDMQI-RGLSAQTQSAYVQAVRQLAQY--FNTPPD-------RLSDDQLRRYFLY 55 Query: 78 RRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 RT+K + ++ +L I+ +L + + +L+ K+ LP L+ + Sbjct: 56 LRTEKQVSASTITVTLCAIR----FLYQHTLQRSWPLLDALRPPKAQPLPVVLSRDEVRA 111 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGD 195 ++ V R+ L ++Y CGLR+ E + L NI + L IQ GKG+ Sbjct: 112 ILHQVR----------TPRHRVCLSIIYACGLRLMEGVRLQVCNIDSARLMLHIQHGKGN 161 Query: 196 KIRIVPLLPSVRKAILEYYD-------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 K R +PL P + ++ L P ++ LP+ R ++ QR Sbjct: 162 KDRYIPLPPPALAMLRAHWRSHQHPRWLFPSHW-VDKALPI--AARSVSMSRDGVQRAFL 218 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + G+ T HTLRHS+ATHLL G +LR IQ LGH +TT YT++ Sbjct: 219 LACQASGMRKHATVHTLRHSWATHLLEAGVNLRIIQGWLGHTSPTTTAHYTHLT 272 >gi|113473885|ref|YP_718148.1| putative integrase [Sphingomonas sp. KA1] gi|112821565|dbj|BAF03436.1| putative integrase [Sphingomonas sp. KA1] Length = 334 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 75/292 (25%), Positives = 129/292 (44%), Gaps = 22/292 (7%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 ++L ER +S T+++Y + F A + + T + L I AF+ Q+ Sbjct: 14 EHLPRERAVSPHTVKTYANCFVLLVRFAADRLKRRPTDLEVEDLGIDLILAFLDHIEAQR 73 Query: 83 IGD-RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD-- 139 R+ L+ I+SF +Y++ R L +R S+P +K + +D Sbjct: 74 GSSVRTRNGRLAAIRSFFRYIEYRVPVCLDQALRVR------SIPSKKTDKALIDYLDRA 127 Query: 140 --NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQGKGDK 196 LL + R+ A+L+L Y GLR+SE ++L ++ D ST+ I GKG + Sbjct: 128 EIKALLDAPDPRTRLGTRDRAMLHLAYAGGLRVSELVTLQLRDFPDRSLSTVHIMGKGRR 187 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG- 255 R++PL + A+ + + P D + +F G+P+ F + + + Sbjct: 188 ERVLPLWKETQFALRAWLAIRP-DAEVA---EIFLNANGQPMTRDGFAFRLAEHVKTAAE 243 Query: 256 -----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 L T H LRHS A H L+ GD+R + LGH + +T+ Y + Sbjct: 244 KQPSILGKRVTPHVLRHSCAMHTLAATGDIRKVALWLGHASIQSTEAYLRAD 295 >gi|91774765|ref|YP_544521.1| integron integrase [Methylobacillus flagellatus KT] gi|91708752|gb|ABE48680.1| Integron integrase [Methylobacillus flagellatus KT] Length = 334 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 90/332 (27%), Positives = 153/332 (46%), Gaps = 73/332 (21%) Query: 33 KLTLQSYECDTRQFLI-----FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87 KL L+ Y T Q + ++ F+ + + R + +I AF++ + Sbjct: 25 KLRLKHYSLRTEQAYVDWIKRYILFHGK-----RHPRDMGAADIEAFLTHL--------A 71 Query: 88 LKRSLSG-----IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 +KR+++ KS L YL + + E L+ N+ ++N +P+ L +++ V +VL Sbjct: 72 VKRNVAASTQNQAKSALLYLYREVLEVELPWLD--NVTQAN-VPKRLPVVLSVSEVQSVL 128 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVP 201 S ++ + LLYG GLR+ EA+ L +++ ++ + + +GKG K R+ Sbjct: 129 AGLS-------GTHALVAALLYGGGLRLMEAVRLRVKDVDIERREIVVREGKGFKDRVTM 181 Query: 202 LLPSVRKAI---------LEYYDLC--------PFDLN--------------------LN 224 L SV A+ L D+ PF L+ L+ Sbjct: 182 LPESVVSALKGHLVKVKMLHEEDVAAGFGEVYLPFALDKKYPNAGRDWGWQYVFPSRQLS 241 Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284 + P R ++ QR ++Q G+ T HTLRHSFATHLL +G D+R++Q Sbjct: 242 VD-PRSGKTRRHHMDEKGVQRAMKQAVFAAGIAKPATPHTLRHSFATHLLQSGYDIRTVQ 300 Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 +LGH +STT IYT+V ++ GG ++ DQ Sbjct: 301 ELLGHSDVSTTMIYTHVLNR-GGKGVVSPLDQ 331 >gi|103485933|ref|YP_615494.1| phage integrase [Sphingopyxis alaskensis RB2256] gi|98976010|gb|ABF52161.1| phage integrase [Sphingopyxis alaskensis RB2256] Length = 334 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 76/299 (25%), Positives = 133/299 (44%), Gaps = 30/299 (10%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 ++L ER +S T+++Y + F A + + T + L I AF+ + Sbjct: 14 EHLPRERAVSPHTVKTYANCFVLLVQFAADRLKRRPTDLEVEDLGTDMIMAFLDH---VE 70 Query: 83 IGDRSLKRS----LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 IG S R+ L+ I+SF +Y++ R L +R ++P +K + + Sbjct: 71 IGRGSCVRTRNGRLAAIRSFFRYIEYRIPACLDQALRVR------AIPTKKTDKALIDYL 124 Query: 139 D----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQGK 193 D LL T + R+ A+L+L Y GLR+SE ++L + D ST+ I GK Sbjct: 125 DRAEIKALLDTPDPRTRLGTRDRAMLHLTYAGGLRVSELVTLQLGDFPDRSLSTMHIMGK 184 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRR 252 G + R++PL + A+ + + P +++ +F G+P+ F + + + Sbjct: 185 GRRERVLPLWKETQIALRAWLAIRP-----QVEVTEIFLNANGQPMTRDGFAFRLAEHVK 239 Query: 253 YLG------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 L T H LRHS A H L+ GD+R + LGH + +T+ Y + + Sbjct: 240 TAATKQPSILGKRVTPHVLRHSCAMHTLAATGDIRKVALWLGHASIQSTETYLRADPEE 298 >gi|197344628|gb|ACH69660.1| phage integrase [uncultured bacterium] Length = 291 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 65/220 (29%), Positives = 105/220 (47%), Gaps = 16/220 (7%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 SL +L+G+K F +R + MR ++ LP L++++ + L+ + Sbjct: 71 SLNATLTGLKFFFDVTLER----SDAMAKMRPVRTPRRLPVVLSQEEV-----SRLIAAA 121 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS 205 K+ A L + YG GLR+ E + L +I + TLR+ QGKG K R L P Sbjct: 122 PSIKYQTA-----LSVAYGAGLRVGEIVRLRVADIDSQRMTLRVDQGKGRKDRYAILPPL 176 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 + + + ++ + + LF G +P++ R + + G+ HT Sbjct: 177 LLQRLRAWWKAAHAEGAIRADGWLFPGRDPVQPMSARQLNRVVHEAAAAAGIGKRVAMHT 236 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 LRHSFATHLL D+R IQ +LGH +L TT +Y V ++ Sbjct: 237 LRHSFATHLLEQKVDIRVIQVLLGHKKLETTSMYAQVATE 276 >gi|118476848|ref|YP_893999.1| integrase [Bacillus thuringiensis str. Al Hakam] gi|118416073|gb|ABK84492.1| integrase [Bacillus thuringiensis str. Al Hakam] Length = 382 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 77/293 (26%), Positives = 138/293 (47%), Gaps = 26/293 (8%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTE--EKIT-----IQTIRQLSYTEIRAFISKRRTQK 82 GL + TL E FL+F + E E +T TIR+ Y + + Sbjct: 85 GLVRKTL---ENKKGYFLVFHRYLEEHHEDVTPNTLDTNTIREFLYYLKNDHVKHKNNHC 141 Query: 83 IGDR--SLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + ++ S+ S+S I + +K+++ E + + K SL + +AL+ VD Sbjct: 142 VKEKYKSVGVSVSYINTIMKHMRAFYNFLVEEEYVQLNPFTKIKSLKEVQDNIEALS-VD 200 Query: 140 NV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KG 194 + LL ++ + R+ ++ LL G+RISEAL+L ++I + + ++G K Sbjct: 201 QLKTLLKQPNQRTYAGFRDYVLMMLLADTGMRISEALNLQQEDIDFKTNVIELKGTNTKN 260 Query: 195 DKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 K R VP+ K + E ++ FD L +F + G ++P F++ ++ Sbjct: 261 RKTRYVPISQKTSKLLRELLVEIEEFD-----TLHIFATVYGNTIDPARFRQRLKMYGNN 315 Query: 254 LGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 G+ + + HT RH+FA + L N GD+ ++Q ILGH + + Y N+ SK+ Sbjct: 316 SGIKGVRVSPHTFRHTFAKYYLLNNGDVMTLQKILGHSSIEMVRKYINMTSKD 368 >gi|163795288|ref|ZP_02189255.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] gi|163795386|ref|ZP_02189353.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] gi|163796178|ref|ZP_02190140.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] gi|159178637|gb|EDP63177.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] gi|159179274|gb|EDP63805.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] gi|159179372|gb|EDP63903.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] Length = 276 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 86/168 (51%), Gaps = 12/168 (7%) Query: 141 VLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGD 195 V+L ++++A ++ A L Y GLR+SE ++L ++ + +R++ GKG Sbjct: 93 VVLSADEVVRFLEAVASLKSRAALTTAYAAGLRVSEVVALRVGDVDSGRMVIRVEHGKGG 152 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYL 254 K R V L + + Y+ L + LF G KP++ V R R Sbjct: 153 KDRYVMLSAQLLGILRTYWRLA------RPEHWLFPGREASKPIDVQVLHAACRSARAAA 206 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 GL T HTLRHSFATHLL +G D+R IQ +LGH LSTT YT V+ Sbjct: 207 GLDKRVTVHTLRHSFATHLLESGTDIRIIQVLLGHANLSTTARYTQVS 254 >gi|289578357|ref|YP_003476984.1| integrase [Thermoanaerobacter italicus Ab9] gi|297544634|ref|YP_003676936.1| integrase family protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528070|gb|ADD02422.1| integrase family protein [Thermoanaerobacter italicus Ab9] gi|296842409|gb|ADH60925.1| integrase family protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 328 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 86/308 (27%), Positives = 148/308 (48%), Gaps = 34/308 (11%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL----------AFYTEEKIT---I 60 LL+E N+ + + S T+++Y D FL FL + E I+ + Sbjct: 19 LLEEFLNYFSTV---KARSYNTVKAYAYDLVLFLRFLKQRRGKVSPDVEFDEIDISDVDV 75 Query: 61 QTIRQLSYTEIRA---FISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNM 116 I + ++ A F++ R+ R+ R ++ ++SF YL KK K+ ++ + Sbjct: 76 DLIESVDLNDLYAYLNFVTNERSNTPPARA--RKVASLRSFYDYLYKKAKVINKNPTQEL 133 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 + K S P L ++ L+D++ R+ AI+ L CGLR+SE +++ Sbjct: 134 ESPKLSVRQPIYLTLDESKKLLDSI-------DGPFKERDYAIITLFLNCGLRVSELVNI 186 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 +I DD+ L + GKG+K R V L + AI Y + P + + + LF R K Sbjct: 187 NIDDIKDDK--LTVIGKGNKQRTVYLNDACINAINAYLRVRPKE-GVKDKKALFLSKRLK 243 Query: 237 PLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLST 294 ++ Q +++ + L +AH LRH+ AT + G D+R++Q +LGH +ST Sbjct: 244 RISVKTVQYTVKKHLKNANLGGKKYSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVST 303 Query: 295 TQIYTNVN 302 TQIYT+V+ Sbjct: 304 TQIYTHVD 311 >gi|149200435|ref|ZP_01877450.1| phage integrase [Lentisphaera araneosa HTCC2155] gi|149200455|ref|ZP_01877470.1| phage integrase [Lentisphaera araneosa HTCC2155] gi|149136449|gb|EDM24887.1| phage integrase [Lentisphaera araneosa HTCC2155] gi|149136469|gb|EDM24907.1| phage integrase [Lentisphaera araneosa HTCC2155] Length = 294 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 108/226 (47%), Gaps = 30/226 (13%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 ++K + F +Y+ KR E L + + + SLP L++ D LL S Sbjct: 67 TVKMDRCALSFFYQYVLKR----EWKWLEIVRIPRVKSLPDILSQ-------DETLLILS 115 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPS 205 H K AR L +Y GLRISE + + +I D+ L ++ KG K R+VPL P Sbjct: 116 HLEK---ARYRTCLTAIYSMGLRISEGVRIQTGDICKDRMRLHVRNSKGYKDRLVPL-PQ 171 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP---------LNPGVFQRYIRQLRRYLGL 256 V +L Y + ++ N L LF GK ++ G Q + GL Sbjct: 172 VTYQMLRDY----WVIHRN-PLLLFPRYAGKSRSNSKTTLHMDKGGVQSAFKAALADSGL 226 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + H+LRHS+ATHL+ G +LR IQ ILGH +TT IY++++ Sbjct: 227 AKQVSVHSLRHSYATHLVEAGVNLRVIQEILGHSSPATTAIYSHLS 272 >gi|120553910|ref|YP_958261.1| phage integrase family protein [Marinobacter aquaeolei VT8] gi|120323759|gb|ABM18074.1| phage integrase family protein [Marinobacter aquaeolei VT8] Length = 283 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 57/158 (36%), Positives = 84/158 (53%), Gaps = 9/158 (5%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAIL 211 + ++ A+L + YGCGLR+SEA+SL +NI ++ L I QGKG K R+VPL + + Sbjct: 117 NPKHRALLLITYGCGLRVSEAVSLQVKNIDGERHLLHIHQGKGGKDRMVPLTDVLLDVLR 176 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 Y+ L L L L G+ L Q+ R +R G+ H LRH++AT Sbjct: 177 AYWCLGRPVLWLFPSEVLV----GQHLTATTAQKVYRHAKRLSGVQRRGGIHALRHAYAT 232 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTN----VNSKN 305 H L +G L +Q LGH L TT+ Y + ++S+N Sbjct: 233 HQLEHGVPLNELQKYLGHSDLRTTERYLHWLPGISSQN 270 >gi|310768311|gb|ADP13261.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 351 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 88/317 (27%), Positives = 139/317 (43%), Gaps = 35/317 (11%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF---- 74 ++WL +L G S T+Q Y R L + E I Q+S + ++ Sbjct: 26 ESWLSHLAAA-GRSPRTVQGYRERVRALLAWC-----EPRGITYAPQVSLAVLESYQRWL 79 Query: 75 -----ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK--ITTESNILNMRNLKKSNSLP- 126 R+ G R L LS I+ L++L +R + + +L + K+ LP Sbjct: 80 QGYRRADGRQLAVNGQRHL---LSAIRMLLRWLLQRHHILYNPAELLEL--PKEERRLPA 134 Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 + +E + ++ ++ T RN AIL LL+ G+R SE L ++ + Sbjct: 135 QVFSEAETRRVLQSLDAGTP-----PGLRNRAILELLWSSGIRRSELAGLLLSDVDFTRG 189 Query: 187 TLRIQ-GKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 + ++ GKG K R+VP+ + + Y D+ P LF +G L G Sbjct: 190 VVNVRRGKGGKDRVVPVGHAALMWLGRYLQDVRPRLAQRFDSGHLFISHKGTGLAHGTLT 249 Query: 245 RYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 R +R L + H RHS AT +L NG D R IQ+ILGH +L TTQIYT V Sbjct: 250 AMAGRAIRSGAHLKKAGACHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAI 309 Query: 304 KNGGDWMMEIYDQTHPS 320 + + +++ THP+ Sbjct: 310 GH----LQKVHAHTHPA 322 >gi|317056716|ref|YP_004105183.1| integrase family protein [Ruminococcus albus 7] gi|315448985|gb|ADU22549.1| integrase family protein [Ruminococcus albus 7] Length = 335 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 82/306 (26%), Positives = 145/306 (47%), Gaps = 31/306 (10%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE---------EKITIQTI------- 63 ++L +++ + T+++Y D R FL +L + E++TI + Sbjct: 15 DFLTYMQLVKARGDRTVEAYYIDLRSFLRYLRIKHKDIDTNNVPFEEMTISEVPFEYVSK 74 Query: 64 -RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122 R + + +++ R+ + R+ R S +K F YL +K + S+ L L K Sbjct: 75 LRLIDAYDYLKWLADERSNSVKTRA--RKTSALKQFYSYLYLKKNSIPSDPLTQLELPK- 131 Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 LP+ L + L+L D L +S E+ + R+ ++ L CG+R+SE L + Sbjct: 132 --LPKTL--PKYLSLEDAQRLLSSIESDHFE-RDYCMITLFLNCGMRLSELCGLDIGDFS 186 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPG 241 + T+R+ GKG K R+V + + A+ Y P L++ Q LF R ++ Sbjct: 187 FESGTIRLFGKGQKERVVYINQACIAALKAY---LPIRLSVQTQEKALFLSNRNTRISRR 243 Query: 242 VFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYT 299 Q + + + GL L T H LRH+ AT + G D ++ ILGH L+TT+IYT Sbjct: 244 RTQEIVEESLKKAGLGNLGITTHKLRHTAATLMYQYGNVDTLVLKDILGHESLATTEIYT 303 Query: 300 NVNSKN 305 +++++N Sbjct: 304 HLSNEN 309 >gi|153931223|ref|YP_001384765.1| phage integrase family site specific recombinase [Clostridium botulinum A str. ATCC 19397] gi|152927267|gb|ABS32767.1| site-specific recombinase, phage integrase family [Clostridium botulinum A str. ATCC 19397] Length = 281 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 77/278 (27%), Positives = 135/278 (48%), Gaps = 27/278 (9%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 GLS TL +Y+ + IF + + TI + ++R F++ +R +K+ S+ Sbjct: 20 GLSLKTLLNYKYN---LAIFADYLRKPLATINAM------DLRIFLA-QRCKKMKASSVN 69 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 +S +KSF +L + ++ L ++ K+ + RALN+++ LL + +T Sbjct: 70 GQISILKSFFGWLHMEEYIPKNPSLKLKQTKQPKRVRRALNQEEL------ELLRQACKT 123 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 R A+L L G R+SE + + +I ++ +L + GKG+K R V K Sbjct: 124 N----REKALLEFLISTGCRLSEVVGIDKNDIDWNEMSLHVIGKGNKERKV-YFDVKTKI 178 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG--VFQRYIRQLRRYLGLPLSTTAHTLRH 267 +L+ Y + +I LF +G G QR I+++ + +G S H RH Sbjct: 179 LLKKY----LAIRNDITPALFVASKGTHARLGGRSIQREIKKIAKRVGTEKSIYPHLFRH 234 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 SFAT +++G L +Q I+GH +TTQIY ++ +N Sbjct: 235 SFATGKINSGMPLPVLQHIMGHENPATTQIYAELSEEN 272 >gi|24373597|ref|NP_717640.1| phage integrase family site specific recombinase [Shewanella oneidensis MR-1] gi|24347925|gb|AAN55084.1|AE015645_10 site-specific recombinase, phage integrase family [Shewanella oneidensis MR-1] Length = 319 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 82/284 (28%), Positives = 124/284 (43%), Gaps = 64/284 (22%) Query: 71 IRAFIS---KRRTQKIGDRSLKRSLSGIKS--------------FLKYLKKRKITTESNI 113 I+AFI+ KR + +G + + L+ + + L YL ++ + E Sbjct: 32 IKAFINFHGKRHPETMGTEEVAQFLTFLANQRNVAINTQKIALNALAYLYQKHLHHELGD 91 Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173 L K LP L+ + ++L+ N L D R+ I+ LLYG GLR+SE Sbjct: 92 LGFCYATKQRYLPTVLSPSE-ISLILNEL----------DGRDRLIIELLYGSGLRVSEC 140 Query: 174 LSLTPQNIMDDQSTLRIQ-GKGDKIR------------------------------IVPL 202 L L Q+I + ++L ++ GKG K R I P Sbjct: 141 LRLRIQDIDIESASLTVRDGKGHKDRQTILSHRCAEKLTTYIEKAIKIQQDDNQQGIGPS 200 Query: 203 LPSV--RK---AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 LP+ RK A ++ + F P + L+ V ++ + R + + Sbjct: 201 LPNALERKYPNAFRQHGWMFIFPSTSTCINPYTGTLCRHHLHQSVIRKALGNAVRNIQMN 260 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T HT RHSFATHLL G D+RS+Q +LGH +STTQIYT+V Sbjct: 261 KRVTCHTFRHSFATHLLQAGRDIRSVQELLGHNDVSTTQIYTHV 304 >gi|298484756|ref|ZP_07002857.1| Site-specific recombinase, phage integrase family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160725|gb|EFI01745.1| Site-specific recombinase, phage integrase family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 319 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 79/301 (26%), Positives = 129/301 (42%), Gaps = 53/301 (17%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W NL+ R T ++Y+ D F F+ + + RQ++ + + A+ + Sbjct: 32 WFANLDNPR-----TRRAYQNDLTDFCSFIGLASADDF-----RQVTRSHVLAWRADLEQ 81 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVD 139 + + +++R L+ + S +L ++N + N PR NE + L D Sbjct: 82 RGLAGATIRRKLAALASLFDHL------LDNNAVAGGNPVHGVKRPRIETNEGKTPALGD 135 Query: 140 NV---LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194 + LL R+ AIL +L GLR EA LT ++ + + LR+ GKG Sbjct: 136 HQAKQLLEAPDTETLKGLRDRAILAVLLYHGLRREEAAQLTTGDLQERRGIKHLRVHGKG 195 Query: 195 DKIRIVPLLPSVRKAILEYY------DLCPFDLNLNIQLPLFRGIRGKPLNPG------- 241 KIR +PL P + I Y D P PLFR +RG G Sbjct: 196 SKIRFLPLHPMAAERIHAYLEQDVERDTAPG--------PLFRSLRGTTTGAGITANGIY 247 Query: 242 -VFQRYIRQ---LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 V + Y ++ + +LG+ H LR + AT+ L + D+ +Q LGH +STT++ Sbjct: 248 TVVEAYAKKAGIVVEHLGV------HGLRATAATNALEHDADIAKVQMWLGHANISTTRL 301 Query: 298 Y 298 Y Sbjct: 302 Y 302 >gi|37525093|ref|NP_928437.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|37527552|ref|NP_930896.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784519|emb|CAE13419.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786987|emb|CAE16061.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 370 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 78/312 (25%), Positives = 134/312 (42%), Gaps = 28/312 (8%) Query: 28 ERGLSKLTLQSYECDTRQFLIFL---AFYTEEKITIQTIRQLSYTEIRAFISKRRT--QK 82 ER S+ TL+ T F+++ Y IT + + R R+T + Sbjct: 44 ERNWSESTLKVQTHHTYHFILWATERGLYYAADITRPILERYQ----RYLYQYRKTNGEP 99 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL----NEKQALTLV 138 + R+ + L +K + K+L K+ + + ++ + LPR + +Q L Sbjct: 100 LSTRTQRTQLEPLKVWFKWLTKQNLILANPAADIELPRLEKHLPRYILTIDETEQILAQP 159 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKI 197 D L R+ A++ LL+ G+R E L ++ + T+ I QGKG+K Sbjct: 160 DLTTLQ--------GIRDRALMELLWSTGMRRGELTRLDVYSVDGKRKTVTIRQGKGNKD 211 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRG-KPLNPGVFQRYIRQLRRYLG 255 R++PL + Y L +N + LF + G L + +G Sbjct: 212 RVLPLGERALSWLQRYQQQVRPQLIVNPDVKALFVAMDGLDGLQANGISNLVTAYINAVG 271 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H RH+ AT +L NG DLR IQ++LGH + +TQ+YT V+ + + ++ Sbjct: 272 IEKKGACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRA----LQAVHA 327 Query: 316 QTHPSITQKDKK 327 THP+ D+K Sbjct: 328 STHPAEQMADEK 339 >gi|222111885|ref|YP_002554149.1| integron integrase [Acidovorax ebreus TPSY] gi|221731329|gb|ACM34149.1| integron integrase [Acidovorax ebreus TPSY] Length = 332 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 80/310 (25%), Positives = 143/310 (46%), Gaps = 60/310 (19%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLS 93 T Q+Y R+F++F +K + R++ E+ AF++ ++ + + ++ + Sbjct: 35 TEQAYVDWARRFILF-----HDK---RHPREMGAPEVTAFLTHLAVERNVSASTQNQAKA 86 Query: 94 GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153 I K + ++ + I++ R K+ LP L +++ V +L+H T+W+ Sbjct: 87 AILFLYKEVLQQDLPWLDEIVSAR---KARRLPVVLTQRE----VRELLMHLQ-GTQWL- 137 Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKG--DKIRIVP--LLPSVRK 208 + LLYG G+RI EAL L +++ ++ L + +GKG D++ ++P L+ +R+ Sbjct: 138 -----VASLLYGTGMRILEALRLRVKDVEFERRELIVREGKGNKDRVTVLPENLITPLRE 192 Query: 209 AILEYYDLCPFDLNLNI----------------------QLPLFRGIRGKPLNPGV---- 242 + L DL+ + Q +R GV Sbjct: 193 QMERARALHRKDLDAGLGAVWLPDALAVKYANAATAWGWQYVFPSAVRSVDPRSGVQRRH 252 Query: 243 ------FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 Q+ + R G+ T H LRHSFATH+L G D+R++Q +LGH +STT Sbjct: 253 HLLEQSVQKAVALAARRAGIDKPCTPHVLRHSFATHMLQAGYDIRTVQELLGHKDVSTTM 312 Query: 297 IYTNVNSKNG 306 IYT+V +K G Sbjct: 313 IYTHVLNKGG 322 >gi|12667367|gb|AAK01408.1|AF324211_1 site-specific tyrosine recombinase IntIA [Shewanella putrefaciens] Length = 317 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 84/309 (27%), Positives = 133/309 (43%), Gaps = 58/309 (18%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 RG S T +SY + F+ F E + + + Q F++ +R I + + Sbjct: 18 RGYSIRTEKSYLYWIKAFINFHHKRHPETMGTEEVAQF-----LTFLANQRNVAINTQKI 72 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 + L YL ++ + E L K LP L+ + ++L+ N L Sbjct: 73 ALNA------LAYLYQKHLHHELGNLGFCYATKQRYLPTVLSPSE-ISLILNEL------ 119 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR--------I 199 D R+ I+ LYG GLR+SE L L Q+I +Q++L ++ GKG K R Sbjct: 120 ----DGRDRLIIERLYGSGLRVSECLRLRIQDIDIEQASLTVRDGKGHKDRQTILSHKCA 175 Query: 200 VPLLPSVRKAI-LEYYD--------------------------LCPFDLNLNIQLPLFRG 232 + L + KA+ +++ D + F P Sbjct: 176 IKLAAYINKAMEIQHSDNQQGIGHALPNALERKYPNAFKQHGWMFIFPSTTTSINPYTGT 235 Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 + L+ V ++ + R + + T HT RHSFATHLL +G D+RS+Q +LGH + Sbjct: 236 LCRHHLHQSVIRKVLGNAVRNIKITKRVTCHTFRHSFATHLLQSGSDIRSVQELLGHNDV 295 Query: 293 STTQIYTNV 301 STTQIYT+V Sbjct: 296 STTQIYTHV 304 >gi|120537151|ref|YP_957208.1| phage integrase family protein [Marinobacter aquaeolei VT8] gi|120326986|gb|ABM21293.1| phage integrase family protein [Marinobacter aquaeolei VT8] Length = 327 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 84/301 (27%), Positives = 135/301 (44%), Gaps = 35/301 (11%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK- 77 +++LQ L +G S T+++Y R I+LA + I L I AF+++ Sbjct: 18 RDYLQRL---KGASTHTVRAYRDTLRLLFIYLADTKGCAVADLQISDLRVDAIAAFLTQL 74 Query: 78 --RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN---ILNMRNLKKSNSLPRALNEK 132 R + R+ +R+ I+SF K+L + + IL + K L L + Sbjct: 75 ESVRANAVVTRNYRRA--AIRSFCKHLIRVDLPHAEQYQRILALPAKKSRQPLATYLEAE 132 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQ 191 + ++D HT+ + R+ +L LY G RISEAL++ ++ + +R+ Sbjct: 133 EVHAIIDQPDRHTA-----LGQRDHGLLLFLYNTGARISEALAVRCADLHLTPPRQVRLH 187 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQL 250 GKG K R+ PL +A+ P N +F +G+PL GV Y+ L Sbjct: 188 GKGRKDRLCPLWRETTQAL----QCLPAVRNDTPGSFVFVNRQGEPLTRDGVA--YL--L 239 Query: 251 RRYLGLPLSTTA---------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 R+Y+ + TT H LRHS A LL +G D+ I+ LGH ++TT Y Sbjct: 240 RKYVADAIPTTPTLKRRKITPHVLRHSCAVALLQSGVDITVIRDYLGHASVATTSRYLTT 299 Query: 302 N 302 N Sbjct: 300 N 300 >gi|326389407|ref|ZP_08210974.1| integrase family protein [Thermoanaerobacter ethanolicus JW 200] gi|325994412|gb|EGD52837.1| integrase family protein [Thermoanaerobacter ethanolicus JW 200] Length = 330 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 84/308 (27%), Positives = 149/308 (48%), Gaps = 34/308 (11%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL----------AFYTE---EKITI 60 LL+E N+ + + S T+++Y D FL FL + E + + Sbjct: 20 LLEEFLNYFSTV---KARSYNTVKAYAYDLVLFLRFLKQRRGKVSPNVEFDEIDISDVDV 76 Query: 61 QTIRQLSYTEIRA---FISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNM 116 I + ++ A F++ R+ R+ R ++ ++SF YL KK K+ +++ + Sbjct: 77 DLIESVDLNDLYAYLNFVANERSNTPPARA--RKVASLRSFYNYLYKKAKVLSKNPTQEL 134 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 + K S P L ++ L++++ R+ AI+ L CGLR+SE +++ Sbjct: 135 ESPKLSVRQPIYLTLDESKKLLNSI-------DGPFKERDYAIITLFLNCGLRVSELVNI 187 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 +I DD+ L + GKG+K R V L + AI Y ++ P + + + LF R K Sbjct: 188 NLDDIKDDK--LTVIGKGNKQRTVYLNDACIDAINTYLEVRPKE-GVKDKKALFLSKRLK 244 Query: 237 PLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLST 294 ++ Q +++ + L +AH LRH+ AT + G D+R++Q +LGH +ST Sbjct: 245 RISVKTVQYTVKKHLKNANLEGKKYSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVST 304 Query: 295 TQIYTNVN 302 TQIYT+V+ Sbjct: 305 TQIYTHVD 312 >gi|168205361|ref|ZP_02631366.1| tyrosine recombinase [Clostridium perfringens E str. JGS1987] gi|170663182|gb|EDT15865.1| tyrosine recombinase [Clostridium perfringens E str. JGS1987] Length = 431 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 87/301 (28%), Positives = 139/301 (46%), Gaps = 26/301 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-------EKITIQT-----IRQLS 67 N+L+N+ +G S T++ Y+ + +L E E + I+ I+ ++ Sbjct: 127 NYLKNI---KGRSPNTVKGYKSNLNLLFKYLVSLKENTPGTDIENVCIRNVDDTFIKNIT 183 Query: 68 YTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLK-KRKITTESNILNMRNLKKSNSL 125 ++ F+S +K G S R ++ IKSF +L K KI E+ L + K L Sbjct: 184 LMDLYNFLSYVDEVRKNGSYSRARLVAAIKSFFLFLNSKLKIIDENIALELEFPKIEKRL 243 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 P L QA +L++ +TK R+ I L CG+R+SE + +I D Sbjct: 244 PVYLTLDQA-----KAVLNSMDKTKRYYYRDYCIFTLFLNCGMRLSELCGIKISDIRGD- 297 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQ 244 L I GKG+K R + L K+I +Y ++ LF I + N GV + Sbjct: 298 -LLTIIGKGNKQRTIYLNSECLKSIHDYLNVRGRGNTPEEDKYLFLSRIDKRISNRGVEK 356 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTNVNS 303 + + T H LRHS AT L G D+RS+Q+ILGH ++TT++YT+V+ Sbjct: 357 LVKKHIENAGFTDKKYTPHKLRHSAATILYKYGNADIRSLQAILGHESIATTELYTHVDD 416 Query: 304 K 304 + Sbjct: 417 E 417 >gi|152990726|ref|YP_001356448.1| phage integrase family site specific recombinase [Nitratiruptor sp. SB155-2] gi|151422587|dbj|BAF70091.1| site-specific recombinase, phage integrase family [Nitratiruptor sp. SB155-2] Length = 353 Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 53/155 (34%), Positives = 83/155 (53%), Gaps = 9/155 (5%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPL-LPSVRK 208 + ARN AI+ ++ G+R+SEA++L +NI+ D L+I GKG+K R+V + +RK Sbjct: 186 VAARNRAIIKMILYTGIRVSEAMNLEMKNIILQKDVYLLKITGKGNKARVVMIKAQKIRK 245 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRH 267 + E+ + L LF +G PL R + ++ G+ AH LRH Sbjct: 246 DLEEWLTKRNCEKGL-----LFCNKKGSPLTQAYISRMVEKILLSCGIRKEKNGAHMLRH 300 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 +FAT L + DL +Q LGH L T++IYT+ + Sbjct: 301 TFATLLYNKSKDLVLVQESLGHASLDTSRIYTHFD 335 >gi|37527560|ref|NP_930904.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|37527568|ref|NP_930912.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786995|emb|CAE16069.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787003|emb|CAE16077.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 376 Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 78/312 (25%), Positives = 134/312 (42%), Gaps = 28/312 (8%) Query: 28 ERGLSKLTLQSYECDTRQFLIFL---AFYTEEKITIQTIRQLSYTEIRAFISKRRT--QK 82 ER S+ TL+ T F+++ Y IT + + R R+T + Sbjct: 44 ERSWSESTLKVQTHHTYHFILWATERGLYYAADITRPILERYQ----RYLYQYRKTNGEP 99 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL----NEKQALTLV 138 + R+ + L +K + K+L K+ + + ++ + LPR + +Q L Sbjct: 100 LSTRTQRTQLEPLKVWFKWLTKQNLILANPAADIELPRLEKHLPRYILTIDETEQILAQP 159 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKI 197 D L R+ A++ LL+ G+R E L ++ + T+ I QGKG+K Sbjct: 160 DLTTLQ--------GIRDRALMELLWSTGMRRGELTRLDVYSVDGKRKTVTIRQGKGNKD 211 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRG-KPLNPGVFQRYIRQLRRYLG 255 R++PL + Y L +N + LF + G L + +G Sbjct: 212 RVLPLGERALSWLQRYQQQVRPQLIVNPDVKALFVAMDGLDGLQANGISNLVTAYINAVG 271 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + H RH+ AT +L NG DLR IQ++LGH + +TQ+YT V+ + + ++ Sbjct: 272 IEKKGACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRA----LQAVHA 327 Query: 316 QTHPSITQKDKK 327 THP+ D+K Sbjct: 328 STHPAEQMADEK 339 >gi|296163748|ref|ZP_06846456.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295886009|gb|EFG65919.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 331 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 91/324 (28%), Positives = 137/324 (42%), Gaps = 49/324 (15%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAF------YT 54 M LP +V ++ + Q L ++GLS T+ SY DT F + LAF +T Sbjct: 1 MSAAGLPSLV-------QRFFTQRLLEQQGLSSHTVASYR-DT--FRLLLAFATKRIGHT 50 Query: 55 EEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK---ITTES 111 K+ + L E + R + R+ + L+ + +F +++ + Sbjct: 51 PSKLRTEDFDALLIEEFLQHLEHGRGNSVRTRNTR--LAAVHAFFRFVAVSEPALFLQCQ 108 Query: 112 NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171 IL + + + + L E +A LV + T WI R+ +L + GLR S Sbjct: 109 RILAIPSKRCEHGPVEFLTESEAAALVGAPDVRT-----WIGNRDRTLLLVAVQTGLRNS 163 Query: 172 EALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLP---SVRKAILEYYDLCPFDLNLNIQL 227 E SL Q++ + + +R GKG K+R PL P +V KA L Y P D Sbjct: 164 ELTSLRRQDVVLGTGAHVRCLGKGRKMRCTPLRPDVVAVMKAWLRYQPGEPDD------- 216 Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL---------STTAHTLRHSFATHLLSNGG 278 P+F RG L+ QR + R + + S T HTLRH A LL +G Sbjct: 217 PVFPSSRGGHLSADALQRLVS---RNVAIACHSCPSLKDKSVTPHTLRHGAAMSLLHHGV 273 Query: 279 DLRSIQSILGHFRLSTTQIYTNVN 302 DL I LGH TT IY + + Sbjct: 274 DLSVIALWLGHESSETTHIYLHAD 297 >gi|256840313|ref|ZP_05545821.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256737585|gb|EEU50911.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 350 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 111/225 (49%), Gaps = 17/225 (7%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALN-EKQALTLVDNVLLHTSHET 149 LS ++ FLKYL R I+ S L N+ + NS + + KQA+ +VLL ++ Sbjct: 91 LSALRVFLKYLSFRDISYMSVFLQAENVPNEKNSKRKVIGLSKQAV----DVLLSMPNQG 146 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSVR 207 I R+ ++ LLY +RI+E L+L NI+ D + + + GKG K R +PLL Sbjct: 147 STIGFRDYTLMLLLYSTAVRINELLTLKISNIVIDCVKPHIIVIGKGRKKRPIPLLAKPA 206 Query: 208 KAILEY---YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-----RRYLGLPLS 259 + + Y Y D N + +GI P++ + +++ R +P+ Sbjct: 207 QCLKRYLIKYHPKQNDANALLFCSKSKGIYV-PMSAENVNKMLKKYATMAHERCQDVPMD 265 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 AH RH+ A+H L NG ++ I +LGH + TT +Y ++ +K Sbjct: 266 LHAHQFRHAKASHWLENGMNIAQISYLLGHESIQTTMVYLDITTK 310 >gi|259907778|ref|YP_002648134.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|259909773|ref|YP_002650129.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|259909780|ref|YP_002650136.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|224963400|emb|CAX54888.1| integrase [Erwinia pyrifoliae Ep1/96] gi|224965395|emb|CAX56927.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96] gi|224965402|emb|CAX56934.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96] gi|283477639|emb|CAY73555.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163] gi|283479866|emb|CAY75782.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163] gi|283479875|emb|CAY75791.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163] Length = 356 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 88/331 (26%), Positives = 149/331 (45%), Gaps = 49/331 (14%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++WL +L G S T+Q Y + L FLA+ E I+ Q+S + ++ Sbjct: 26 ESWLAHLAAA-GRSPRTVQGYR---ERVLAFLAWC--EPRGIRYAPQVSLAVLESYQRYL 79 Query: 79 RTQKIGDRSL------KRSLSGIKSFLKYLKKRK--ITTESNILNMRNLKKSNSLP-RAL 129 R + D +L + LS I+ L++L +R + + +L + K+ LP + Sbjct: 80 RGYRKADGTLLAVNGQRHLLSAIRMLLRWLLQRHHILYNPAELLAL--PKEERRLPAQVF 137 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 +E + ++ ++ T RN AIL LL+ G+R +E +L ++ + + Sbjct: 138 SEAETRRVLQSLDAGTP-----PGLRNRAILELLWSTGIRRTELANLLLSDVDAVRGVVN 192 Query: 190 IQ-GKGDKIRIVPL-----------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 ++ GKG + R+VP+ L VR + + +D LF +G Sbjct: 193 VRRGKGGRDRVVPVGHTALIWLGRYLKDVRPRLAQRFDSGH----------LFISHKGTG 242 Query: 238 LNPGVFQRYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 L R +R L + H RHS AT +L NG D R IQ+ILGH +L TTQ Sbjct: 243 LGRSTLTAMAGRAIREGAHLKKAGACHIFRHSMATQMLENGADTRHIQAILGHEKLETTQ 302 Query: 297 IYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327 IYT V + + +++ THP+ ++ +K Sbjct: 303 IYTRVAIGH----LQKVHAHTHPAEKRRTEK 329 >gi|125623479|ref|YP_001031962.1| integrase-recombinase [Lactococcus lactis subsp. cremoris MG1363] gi|124492287|emb|CAL97219.1| integrase-recombinase [Lactococcus lactis subsp. cremoris MG1363] gi|300070227|gb|ADJ59627.1| integrase-recombinase [Lactococcus lactis subsp. cremoris NZ9000] Length = 311 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 77/291 (26%), Positives = 138/291 (47%), Gaps = 31/291 (10%) Query: 25 LEIERG-LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83 LE++ G SK T+++YE +F+ F +++ I I ++ Y + FIS+ + Sbjct: 12 LELKLGNYSKRTMETYEQHIDKFIDFYRKEICKEMDIYAINKMHY---KLFISQLLDNSL 68 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN--- 140 + L K+F YL + ++ S + +++ LK++ KQALT ++ Sbjct: 69 RATYINAILKSNKAFYSYLIREQVLKTSPMDSIKLLKET---------KQALTTFNDDEV 119 Query: 141 -VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 +L+ + +++ARN I+ +L G+RISE +++ ++ D +R+ GKGDK R+ Sbjct: 120 KAMLNVWNFNTYLNARNKCIIAVLADTGIRISELINIKDSDLTD--QYIRVLGKGDKWRV 177 Query: 200 VPLLPSVRKAILEYYDLCPFDLN---------LNIQLPLFRGIRGKPLNPGV-FQRYIRQ 249 VP+ + + +Y L N + LF G G+ + + I Q Sbjct: 178 VPISNELNYLLTKYKRLRDNHFNKIRNRNGKVRELDSELFLGKTGRSIKTITNIEVMITQ 237 Query: 250 --LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 L+ + + + H RH + L G D+ +I +LGH LSTTQIY Sbjct: 238 TGLQANVRASVRCSPHQFRHYWTCKSLELGQDIFTISKLLGHTNLSTTQIY 288 >gi|257413888|ref|ZP_04744580.2| putative tyrosine recombinase XerD [Roseburia intestinalis L1-82] gi|257201913|gb|EEV00198.1| putative tyrosine recombinase XerD [Roseburia intestinalis L1-82] Length = 334 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 80/317 (25%), Positives = 145/317 (45%), Gaps = 32/317 (10%) Query: 14 LLKERQN-WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 LLKE N +L + ++ L T+++Y+ D QF+ + +K + Sbjct: 24 LLKEEINKYLNYCKFQKELKDKTIKAYKADLEQFITVIGENNPDKEVLNAYL-------- 75 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN-LKKSNSLPRALNE 131 ++ + QK ++KR ++ +K+ YL++ ++ + ++ ++ LP+ + Sbjct: 76 VYLHRMYKQK----TVKRKIASVKALFHYLEEEELIEINPFHKVKTKFREEVILPKII-- 129 Query: 132 KQALTLVDNVLLHTSHE------TKW---IDARNSAILYLLYGCGLRISEALSLTPQNIM 182 +++ +L H E ++W I R+ A++ L+ GLRISE L + + Sbjct: 130 --PRDIIEQLLNHLYKERSIKEYSEWRKKIILRDIAVVETLFSTGLRISELCHLQNKYVD 187 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242 L IQGKG K R + + + +IL Y F+ + Q F G L+ Sbjct: 188 LKNGVLCIQGKGGKERYLQIGNNDVLSILNAYKK-SFEDEIKKQGYFFVNRYGNALSEQS 246 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + I + + ++ T H RHSFAT+L+ ++R IQ +LGH ++TTQIYT V Sbjct: 247 ARSMIHKYAGEIQADINITPHMFRHSFATYLMEEDVNIRYIQKMLGHASITTTQIYTYVT 306 Query: 303 SKNGGDWMMEIYDQTHP 319 ++ EI HP Sbjct: 307 TEKEK----EILQTRHP 319 >gi|254465304|ref|ZP_05078715.1| phage integrase [Rhodobacterales bacterium Y4I] gi|206686212|gb|EDZ46694.1| phage integrase [Rhodobacterales bacterium Y4I] Length = 292 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 57/156 (36%), Positives = 78/156 (50%), Gaps = 21/156 (13%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYD- 215 A L + YG GLR SE +L +I D+ + + QGKG K R V L P + + EY+ Sbjct: 128 AALSISYGAGLRASEVCNLKVSDIDSDRMLIHVEQGKGRKDRKVMLSPGLLNLLREYWRE 187 Query: 216 ------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHS 268 L P +N P++ R + G+ +T HTLRHS Sbjct: 188 ARPEGWLFPGKPKIN------------PVSSRQLHRAFSSAKLIAGIKKPGSTLHTLRHS 235 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 FATHLL G D+R IQ +LGH +L TT+ YT+V +K Sbjct: 236 FATHLLEAGTDVRVIQVLLGHAKLETTERYTHVATK 271 >gi|291535839|emb|CBL08951.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1] Length = 312 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 80/317 (25%), Positives = 145/317 (45%), Gaps = 32/317 (10%) Query: 14 LLKERQN-WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 LLKE N +L + ++ L T+++Y+ D QF+ + +K + Sbjct: 2 LLKEEINKYLNYCKFQKELKDKTIKAYKADLEQFITVIGENNPDKEVLNAYL-------- 53 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN-LKKSNSLPRALNE 131 ++ + QK ++KR ++ +K+ YL++ ++ + ++ ++ LP+ + Sbjct: 54 VYLHRMYKQK----TVKRKIASVKALFHYLEEEELIEINPFHKVKTKFREEVILPKII-- 107 Query: 132 KQALTLVDNVLLHTSHE------TKW---IDARNSAILYLLYGCGLRISEALSLTPQNIM 182 +++ +L H E ++W I R+ A++ L+ GLRISE L + + Sbjct: 108 --PRDIIEQLLNHLYKERSIKEYSEWRKKIILRDIAVVETLFSTGLRISELCHLQNKYVD 165 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242 L IQGKG K R + + + +IL Y F+ + Q F G L+ Sbjct: 166 LKNGVLCIQGKGGKERYLQIGNNDVLSILNAYK-KSFEDEIKKQGYFFVNRYGNALSEQS 224 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + I + + ++ T H RHSFAT+L+ ++R IQ +LGH ++TTQIYT V Sbjct: 225 ARSMIHKYAGEIQADINITPHMFRHSFATYLMEEDVNIRYIQKMLGHASITTTQIYTYVT 284 Query: 303 SKNGGDWMMEIYDQTHP 319 ++ EI HP Sbjct: 285 TEKEK----EILQTRHP 297 >gi|170694112|ref|ZP_02885267.1| integrase family protein [Burkholderia graminis C4D1M] gi|170696177|ref|ZP_02887311.1| integrase family protein [Burkholderia graminis C4D1M] gi|170138905|gb|EDT07099.1| integrase family protein [Burkholderia graminis C4D1M] gi|170140852|gb|EDT09025.1| integrase family protein [Burkholderia graminis C4D1M] Length = 291 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 80/288 (27%), Positives = 130/288 (45%), Gaps = 26/288 (9%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 RQ+ + ++ + R L+ T Y RQF FL + T++ +R+ + IS Sbjct: 12 RQHMIDDMRM-RKLAPQTQAGYVRVVRQFAAFLG-RPPDTATVEDLRRYQLHLVDHGISP 69 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 SL +++G+K F + + + M+ ++ +LP L+ + L Sbjct: 70 V--------SLNAAITGLKFFFEI----TLNQPGLMARMQPVRVPRTLPVVLSPDEVARL 117 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196 + + H+T L + YG GLR SE ++L ++ + TLRI QGKG + Sbjct: 118 IAAAG-NLKHQTA---------LSVAYGAGLRASEVVALKVGDVDSQRMTLRIEQGKGRR 167 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLG 255 R L P + + + ++ + + LF G+ PL+ R I Sbjct: 168 DRYAMLSPVLLERLRVWWRVAHAQGRMLEGGWLFPGLDPVDPLSTRQLNRAIHAAAEEAH 227 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 L + HTLRHSFATHLL D+R IQ +LGH +L TT +YT V + Sbjct: 228 LGKRVSMHTLRHSFATHLLEQKEDIRVIQVLLGHKKLETTSLYTQVAT 275 >gi|163796175|ref|ZP_02190137.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] gi|163797772|ref|ZP_02191719.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] gi|159176992|gb|EDP61556.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] gi|159178634|gb|EDP63174.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] Length = 276 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 86/168 (51%), Gaps = 12/168 (7%) Query: 141 VLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGD 195 V+L ++++A ++ A L Y GLR+SE ++L ++ + +R++ GKG Sbjct: 93 VVLSADEVVRFLEAVASLKSRAALTTAYAAGLRVSEVVALRVGDVDSGRMVIRVEHGKGG 152 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYL 254 K R V L + + Y+ L + LF G KP++ V R R Sbjct: 153 KDRYVMLSAQLLGILRTYWRLA------RPEHWLFPGREASKPIDVQVLHAACRSARAAA 206 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 GL T HTLRHSFATHLL +G D+R IQ +LGH LSTT YT V+ Sbjct: 207 GLDKRVTVHTLRHSFATHLLESGTDIRIIQVLLGHANLSTTARYTQVS 254 >gi|118444090|ref|YP_878186.1| integrase/recombinase [Clostridium novyi NT] gi|118134546|gb|ABK61590.1| integrase/recombinase, putative [Clostridium novyi NT] Length = 274 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 108/233 (46%), Gaps = 31/233 (13%) Query: 75 ISKRRTQKIGDRSLK-----RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 I + + I DR LK R L I FLK+ IT + + ++ N L L Sbjct: 51 IDEYKNHLIYDRGLKIKTINRKLVSINQFLKF---NNITVD---IRQEKVQMQNFLDDIL 104 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 + + LV+ K D R AI+Y LY G+R+SE L LT +I + ++ Sbjct: 105 SNEDVKALVNATY-------KKDDLRARAIIYTLYYTGMRVSEMLQLTIYDIK--KQSIT 155 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYI 247 I GKG K R V +P+ K I E Y +N+ I+ LF G RG P+N I Sbjct: 156 ILGKGSKHREV-FVPNKLKDIWEAY------MNVRIKKGTALFTGKRG-PINRKTVDSLI 207 Query: 248 RQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 ++ G+ S AH RH + +L G D+ +I I GH ++TT+IYT Sbjct: 208 KEYAALAGVNKSKAHAHNFRHLYCKNLADKGIDISTIADIAGHQNINTTRIYT 260 >gi|227818829|ref|YP_002822800.1| transposase number 1 for insertion sequence NGRIS-16a [Sinorhizobium fredii NGR234] gi|227819104|ref|YP_002823075.1| transposase number 1 for insertion sequence NGRIS-16b [Sinorhizobium fredii NGR234] gi|227819152|ref|YP_002823123.1| transposase number 1 for insertion sequence NGRIS-16c [Sinorhizobium fredii NGR234] gi|227819580|ref|YP_002823551.1| transposase number 1 for insertion sequence NGRIS-16d [Sinorhizobium fredii NGR234] gi|227819591|ref|YP_002823562.1| transposase number 1 for insertion sequence NGRIS-16e [Sinorhizobium fredii NGR234] gi|227820371|ref|YP_002824342.1| transposase number 1 for insertion sequence NGRIS-16f [Sinorhizobium fredii NGR234] gi|227822209|ref|YP_002826180.1| putative transposase number 1 for insertion sequence NGRIS-16h [Sinorhizobium fredii NGR234] gi|227823694|ref|YP_002827667.1| putative transposase number 1 for insertion sequence NGRIS-16 [Sinorhizobium fredii NGR234] gi|36959087|gb|AAQ87512.1| Putative integrase/recombinase Y4QK [Sinorhizobium fredii NGR234] gi|227337828|gb|ACP22047.1| putative transposase number 1 for insertion sequence NGRIS-16a [Sinorhizobium fredii NGR234] gi|227338103|gb|ACP22322.1| putative transposase number 1 for insertion sequence NGRIS-16b [Sinorhizobium fredii NGR234] gi|227338151|gb|ACP22370.1| putative transposase number 1 for insertion sequence NGRIS-16c [Sinorhizobium fredii NGR234] gi|227338579|gb|ACP22798.1| putative transposase number 1 for insertion sequence NGRIS-16d [Sinorhizobium fredii NGR234] gi|227338590|gb|ACP22809.1| putative transposase number 1 for insertion sequence NGRIS-16e [Sinorhizobium fredii NGR234] gi|227339370|gb|ACP23589.1| putative transposase number 1 for insertion sequence NGRIS-16f [Sinorhizobium fredii NGR234] gi|227341209|gb|ACP25427.1| putative transposase number 1 for insertion sequence NGRIS-16h [Sinorhizobium fredii NGR234] gi|227342696|gb|ACP26914.1| putative transposase number 1 for insertion sequence NGRIS-16 [Sinorhizobium fredii NGR234] Length = 286 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 57/141 (40%), Positives = 76/141 (53%), Gaps = 8/141 (5%) Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222 Y GLR +E +SL NI ++ +RI+ GKG K R V L + + Y+ L Sbjct: 130 YAAGLRATETVSLKVSNIDGERGVIRIEHGKGGKDRNVMLSAQLLHILRVYWKL------ 183 Query: 223 LNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281 + Q+ LF G KP++ V R R G+ + HTLRHSFATHLL +G D+R Sbjct: 184 VRPQVWLFPGRDESKPIDVQVLHSACRSARAAAGIDKRISVHTLRHSFATHLLESGTDIR 243 Query: 282 SIQSILGHFRLSTTQIYTNVN 302 IQ +LGH LSTT YT V+ Sbjct: 244 IIQVLLGHNNLSTTARYTKVS 264 >gi|145306755|ref|YP_001144419.1| integrase/recombinase [Magnetospirillum gryphiswaldense MSR-1] gi|144901521|emb|CAM78243.1| integrase/recombinase [Magnetospirillum gryphiswaldense MSR-1] Length = 302 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 69/290 (23%), Positives = 131/290 (45%), Gaps = 26/290 (8%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 RQ ++++ + R S+ T ++Y D +F FL + + T + +RQ + + + Sbjct: 14 RQRLIEDMTLRR-FSRETQRNYIRDVGRFAAFLG-RSPDTATAEDVRQFQLEQRESGVPV 71 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 +++ I S L++ I + + LP L+ ++ L Sbjct: 72 P------------TMNSIVSALRFFFTHTIDRPDLARKLMRISHPRQLPMVLSREEVARL 119 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDK 196 ++ ++ A L + YG GLR++E +L ++I ++ +R++ GKG + Sbjct: 120 LNATTC----------LKHQAALSVAYGAGLRVAEVSALKVRDIDSERMLIRVERGKGGR 169 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLG 255 R L P + + +++ ++ LF G KP++ R + + + Sbjct: 170 SRNAMLSPDLLTLLRQWWAFGRQQGVMHRDGWLFPGQHTMKPISTRQLHRIVVEAAQAAE 229 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + HTLRHSFATHLL +G D+R IQ +LGH +L T +YT V ++ Sbjct: 230 IAKRVGPHTLRHSFATHLLEDGVDIRVIQVLLGHSKLENTALYTKVATRT 279 >gi|326331386|ref|ZP_08197676.1| tyrosine recombinase XerC [Nocardioidaceae bacterium Broad-1] gi|325950642|gb|EGD42692.1| tyrosine recombinase XerC [Nocardioidaceae bacterium Broad-1] Length = 331 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 77/306 (25%), Positives = 130/306 (42%), Gaps = 35/306 (11%) Query: 29 RGLSKLTLQSYECD----TRQFLI---------FLAFYTEEKITIQTIRQLSYTEIRAFI 75 RGL+ + +Y D RQ + LA +T Q +R ++Y +R Sbjct: 19 RGLNDKSRSAYRQDIVAWARQLHVDAGGEPDADVLALVPISALTDQNVR-IAYRSLR--- 74 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR--ALNEKQ 133 + + +R + ++ F +L+ L + ++ + LP +++E + Sbjct: 75 -----ENSAAATCQRRVGTLRLFTHWLQLEGHLLVDPTLRIEAPERPSRLPAGWSVDELR 129 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLRI 190 L V + + +W R+ AI +L G+R +E LT +I D ++ +R+ Sbjct: 130 RLARVASTPREGTDRRRW-PTRDRAIFAVLVTTGVRAAELCDLTVGSIRREPDGETLVRV 188 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYI 247 GKGDK R +PL P A+ Y L + + P LF GK L PG + Sbjct: 189 IGKGDKQRNLPLPPEAVDAVDAY--LAELEARFGTRDPADNLFVLTSGKQLRPGALNHLV 246 Query: 248 RQLRRYLGLP--LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 R G+P AH RHS A L+ +G + ++Q +LGH L TT IY + + Sbjct: 247 ETWIRLAGVPKQPGEAAHAFRHSAAKGLIRSGVPVPAVQGLLGHEDLKTTGIYVKATASD 306 Query: 306 GGDWMM 311 D ++ Sbjct: 307 TRDAVL 312 >gi|310778330|ref|YP_003966663.1| integrase family protein [Ilyobacter polytropus DSM 2926] gi|309747653|gb|ADO82315.1| integrase family protein [Ilyobacter polytropus DSM 2926] Length = 297 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 70/287 (24%), Positives = 131/287 (45%), Gaps = 11/287 (3%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++++ E G S T++S++ D Q L Y +K I + + +R F+ + Sbjct: 11 KDFIYFEEFGDGKSLNTIKSFKKDLGQ----LRDYLSKKENINNPKDIKEMALRGFLVEL 66 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + IG RSL R +S +++F KYLK + ++ + + LP L +++ + Sbjct: 67 QKENIGKRSLNRKISSLRTFFKYLKNQGYIEKNPTILLTGPAFKADLPEILTKEEIDRIR 126 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + + + ++ R+ I+ LLY G+R SE LSL ++ LR+ G G + R Sbjct: 127 EVIDIEKTN-----GIRDRLIVELLYSSGIRTSELLSLGESLFDLEKRQLRVTG-GKQPR 180 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 IV R+ Y + LF G L+ +R I + + + Sbjct: 181 IVFFSERTREYFKRYVESKKKKYRAKYTADILFVNGSGTRLSDRSLRRIIERYAKKAEIQ 240 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + HT RH+F ++L++G L +Q ++GH + +T+IY +K Sbjct: 241 KEISPHTFRHTFGVYMLTHGMGLMHLQELMGHVSVESTKIYEEFVNK 287 >gi|120553909|ref|YP_958260.1| integron integrase [Marinobacter aquaeolei VT8] gi|120323758|gb|ABM18073.1| integron integrase [Marinobacter aquaeolei VT8] Length = 329 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 84/322 (26%), Positives = 139/322 (43%), Gaps = 59/322 (18%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L+N RGL+ T ++Y ++F+ F E + E+ AF+S Q Sbjct: 18 LRNFIRLRGLAYKTEKTYVFWIKRFIRFHGRKHPE--------SMGTAEVEAFLSHLVLQ 69 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 + S+ + + + +L + + T L KK LP + +A ++DN Sbjct: 70 --ANVSVATQRVALNALI-FLYREFLGTPLENLEYEAAKKPKRLPVVFSPDEARRVIDN- 125 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIV 200 ++ + L+YG GLRI+EAL L +++ Q + +GKG K R+ Sbjct: 126 ----------LEGEFKLVAMLIYGAGLRINEALRLRVKDVDFGMQQLIVREGKGSKDRVT 175 Query: 201 --------PLLPSVRKAILEY-YDLC--------PFDLN------------------LNI 225 PL + A++++ DL P L+ L++ Sbjct: 176 LLPDRLIQPLQDQIHAALMQHQADLAKGCGSVYMPAGLSKKYPNASQEPDWQYVFPALDL 235 Query: 226 QLPLFRGIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284 + GIR + + Q++ + R G+ +HT RHSFAT LL +G DLR+IQ Sbjct: 236 SIDPRSGIRRRHHMMDRTVQKHFKHAIRKAGIHKPAGSHTFRHSFATRLLESGYDLRTIQ 295 Query: 285 SILGHFRLSTTQIYTNVNSKNG 306 +LGH + TT+IYT+V K G Sbjct: 296 KLLGHSDVRTTEIYTHVVRKGG 317 >gi|186471690|ref|YP_001863008.1| integrase family protein [Burkholderia phymatum STM815] gi|184197999|gb|ACC75962.1| integrase family protein [Burkholderia phymatum STM815] Length = 343 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 80/307 (26%), Positives = 139/307 (45%), Gaps = 32/307 (10%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR- 72 LL+ Q++L L RG+S T++SY L F A + I + L+ ++ Sbjct: 13 LLRFFQDYLPTL---RGVSVHTIRSYRDAVVLLLQFTARESRRPIEALDLSDLNADHVKQ 69 Query: 73 --AFISKRRTQKIGDRSLKRSLSGIKSFLKYL---KKRKITTESNILNMRNLKKSNSLPR 127 F+ R I R+ + L+ I +F +++ + +L + + + P Sbjct: 70 FLKFLESERGNSIATRNAR--LAAIHAFARFVIAEHPEHLAPFQQVLGIPFKRGAREAPI 127 Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQS 186 E + + LL T +++ R+ A+ L++ G R+ E L+L ++ +D Sbjct: 128 EYLETAEI----DTLLTTIDQSRPAGQRDFALFALMFNTGARVQEILNLRICDLRLDPPP 183 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQR 245 +R+ GKG+K+R+ P+ P + + E P + +LP+F RG ++ GV R Sbjct: 184 QVRLHGKGNKVRVCPIWPRTAQLLRELIRTRPLVAQGSAELPVFVNCRGTQMSRFGV--R 241 Query: 246 YIRQLRRYLGLPLSTT----------AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 Y+ LR+Y+ L ST H+LRH+ A LL G D +I LGH L+TT Sbjct: 242 YL--LRKYM-LIASTRNPTLAHKEIHPHSLRHTTAIQLLKAGVDFATISQWLGHASLNTT 298 Query: 296 QIYTNVN 302 Y + Sbjct: 299 MRYARAD 305 >gi|114566841|ref|YP_753995.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337776|gb|ABI68624.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 306 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 72/295 (24%), Positives = 133/295 (45%), Gaps = 15/295 (5%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 R +SK TL +Y ++F Y EK I+ S T I ++ + ++ Sbjct: 17 RQISKATLTNYMGCLKEFHT----YCLEKEIIEVTDITSNTIKSYLIYCQKERGNNPTTI 72 Query: 89 KRSLSGIKSFLKYLKKRKITTE-SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 L IK F YL++ +I E +N ++ N K+N ++KQ ++ + Sbjct: 73 NSKLRSIKIFFNYLQEIEIFNEKNNPIHKVNYIKANVKIEVFSDKQINEMLSYYRRIKTR 132 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207 + R+S I+ L G G+R+ E +L ++ + + + GK +P+ ++ Sbjct: 133 DKSLYAYRDSTIIITLLGTGMRLGELCNLKWSDVDFENQHIILFGKLQTQTSIPMADKLK 192 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGI--RGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHT 264 + EY C +LP+F + GKPL+P + ++L++ + P + A+ Sbjct: 193 SELQEYKLFCQKQFG---KLPMFVFVDRTGKPLSPNAVKNMFKRLKQIMNFPNVRCCAYD 249 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 RH+FA L NGGD+ ++Q +L H + T+ Y + G + E +Q +P Sbjct: 250 FRHTFAHRFLMNGGDVFTLQKLLRHSSPAMTERYLAI----WGTALQERANQFNP 300 >gi|269102990|ref|ZP_06155687.1| phage integrase family protein [Photobacterium damselae subsp. damselae CIP 102761] gi|268162888|gb|EEZ41384.1| phage integrase family protein [Photobacterium damselae subsp. damselae CIP 102761] Length = 291 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 103/223 (46%), Gaps = 32/223 (14%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 ++K +G++ F K++ +R + LN+ +LP L + L++ Sbjct: 71 TVKIDRNGLQFFFKHVLQR----DWEWLNIVKPPHVKTLPDILTPSEVSLLINAT----- 121 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS 205 R LY GLR+ E L+LT +I + + I QGKG K R +PL Sbjct: 122 -----SQLRYQVFFLTLYSLGLRLGEGLNLTVGDIDSHRMLVHIRQGKGGKDRFIPLPRR 176 Query: 206 VRKAILEYYD-------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 A+ Y+ L P NLN + ++ G Q+ ++ + + G+ Sbjct: 177 TLYALRYYWQTHKNSRYLFPSQFNLNHTV----------MDRGGVQKAMKAVIKSCGITK 226 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 S + H LRHS+ATHLL G DLRS+Q +LGH L+ T YT++ Sbjct: 227 SISPHNLRHSYATHLLERGLDLRSVQHLLGHNSLNATAKYTHL 269 >gi|319789925|ref|YP_004151558.1| integrase family protein [Thermovibrio ammonificans HB-1] gi|317114427|gb|ADU96917.1| integrase family protein [Thermovibrio ammonificans HB-1] Length = 271 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 68/236 (28%), Positives = 113/236 (47%), Gaps = 36/236 (15%) Query: 88 LKRSLSGIKSFLKYLKKRKITTESNI-LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 + R +S + +F +L +I ++ + ++R K +P AL ++ V+ VL Sbjct: 64 INRRISALNTFFNFLVDMEIIDKNPVKPSLRIKKVKQRVPEALTPEE----VEKVLEAAR 119 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVPLLP 204 + ILY CGLRISE LSLT ++I++ + L++ GKG K R +PL Sbjct: 120 KRGERDYLMFKTILY----CGLRISELLSLTKESIVEFKGRPVLKVIGKGGKERFIPLSR 175 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ--RYI-RQLRRYLGLPLSTT 261 S + ++ Y + + G+ L P +Q +YI ++R G+P+ Sbjct: 176 SFARELISYAE----------------RVEGEKLFPLSYQGAKYIFNRVRDETGVPIH-- 217 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 H LRH+FAT L+ G D+R IQ+ LGH +T+ Y V + M ++ D Sbjct: 218 PHKLRHTFATVLVDRGVDIRVIQAFLGHASPNTSARYAKVRD----ELMFKVVDSV 269 >gi|60256815|gb|AAX14926.1| integrase [Xanthomonas perforans] Length = 339 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 84/177 (47%), Gaps = 37/177 (20%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFD 220 LLYG G+R+ E L L +++ D + + ++ GKG K R VPL S+++ + + Sbjct: 141 LLYGSGMRLLECLRLRIKDVDDARGEIVVRDGKGGKDRRVPLPRSLKEVLQRQRERALLL 200 Query: 221 LNL-------NIQLP--LFRGIRGKPLNPG---------------------------VFQ 244 + LP L R PG V Q Sbjct: 201 HAADLAAGTGRVFLPHALARKYPNAGAEPGWQYLFPSAPQSRDPRSGRVGRHHVSEEVLQ 260 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 R ++ RR+ G+ T HTLRHSFATHLL G D+R++Q +LGH ++TTQIYT+V Sbjct: 261 RAVQMARRHAGIVKPATCHTLRHSFATHLLEAGHDIRTVQELLGHKDVATTQIYTHV 317 >gi|168698681|ref|ZP_02730958.1| phage integrase family protein [Gemmata obscuriglobus UQM 2246] Length = 303 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 69/269 (25%), Positives = 124/269 (46%), Gaps = 20/269 (7%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T +++ D ++F ++ A E + + T+ R + + + Q + ++ R+L Sbjct: 35 TRKAFTLDIKKFAVWFAEVNREPFRVGRVTMRDVTDFREHLRREKGQAVS--TVNRALVA 92 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 ++ + +L ++ + + ++ L++ P+ L Q L+ V L D Sbjct: 93 VRRYFGWLAEQGHVASNPAVGVKELRRVQLAPKGLQRDQVRKLLREVELRQ-------DV 145 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQ-GKGDKIRIVPLLPSVRKAIL 211 R SA+ +LL G RI + ++L Q++M + T+ + GKG K R VPL RK+I Sbjct: 146 RASAVFHLLLYTGCRIGDLVNLKLQDLMLTERSGTVVFRLGKGGKQRSVPLPLPARKSIQ 205 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 Y D P + Q+ +F G RG PL + + +G+ L H RH+ A Sbjct: 206 AYLDTRP---PVKEQI-VFIGERG-PLTDRGVRAMCDKYSALIGVKLHP--HLFRHTMAH 258 Query: 272 HLLS-NGGDLRSIQSILGHFRLSTTQIYT 299 L+ N DL ++ +LGH L+TT Y Sbjct: 259 QFLADNENDLVALAQLLGHENLNTTARYA 287 >gi|28558853|ref|NP_788113.1| putative integrase/recombinase [Ruegeria sp. PR1b] gi|22726404|gb|AAN05199.1| RC126 [Ruegeria sp. PR1b] Length = 313 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 84/306 (27%), Positives = 138/306 (45%), Gaps = 24/306 (7%) Query: 14 LLKERQNWLQNLEIER-GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 + K R N +N E+ GLS+ +L++Y D F F + K+ + +I Sbjct: 1 MTKIRINDFENYCREQLGLSEHSLRAYRQD---LAAFAKFKQKAKLNDPPL----AADII 53 Query: 73 AFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALN 130 F R Q + +++R L ++S+ +L + + S +R +++ LPR ++ Sbjct: 54 DFQKDLREEQGVSPATIRRRLVTLRSYYGWLAENDTSCPSPFEGLRLDMRVPKRLPRPVD 113 Query: 131 EKQALTLVDN----VLLHTSHE---TKWIDAR--NSAILYLLYGCGLRISEALSLTPQNI 181 + + V L S E K I A I LL GLRI E SL ++ Sbjct: 114 RPTLGAVFRSAQHIVQLDPSDELSVPKEIPAAQITGLIARLLIVTGLRIGELTSLRVCDV 173 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLN 239 + +R++GKGD+ R V + + + + D C Q LF G L Sbjct: 174 SGAATQIRVRGKGDRERTVYVANDRLQTDFKRFWEDRCD---AAGSQAWLFTNSMGDRLT 230 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 P F++ +R L + L + T H RHS AT L+ G D+R +Q +LGH ++TT+IYT Sbjct: 231 PQAFRKRLRTLSKSLRIEPHLTPHRFRHSAATLLIEEGVDIRLVQRLLGHASIATTEIYT 290 Query: 300 NVNSKN 305 V+ + Sbjct: 291 KVSDNS 296 >gi|37677230|ref|NP_937626.1| putative integrase [Vibrio vulnificus YJ016] gi|37201775|dbj|BAC97596.1| putative integrase [Vibrio vulnificus YJ016] Length = 296 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 101/205 (49%), Gaps = 16/205 (7%) Query: 99 LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158 L++ K + + + + K LP ++ +Q +++ T+ E ++ Sbjct: 79 LQFFYKHTLNKQWEWIGIIKPPKVKRLPNIISPEQVAQIIN-----TTREPRY------R 127 Query: 159 ILYL-LYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDL 216 +L+L LY GLRI+EAL+LT +I + I+ GKG K R+VPL A+ Y+ Sbjct: 128 VLFLTLYTMGLRINEALNLTISDIDSHNMQVHIRYGKGGKDRLVPLPHRTLHALRRYW-- 185 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 C + + P N Q+ ++Q+ G+ T H+LRH FATHLL Sbjct: 186 CTHR-HPKLLFPSKGKCCDVAFNDQGAQKALKQVVHECGIHKRITPHSLRHCFATHLLEQ 244 Query: 277 GGDLRSIQSILGHFRLSTTQIYTNV 301 G DLRS+Q +LGH L+TT YT + Sbjct: 245 GLDLRSLQILLGHASLNTTARYTQL 269 >gi|254785433|ref|YP_003072862.1| integron integrase [Teredinibacter turnerae T7901] gi|237684485|gb|ACR11749.1| integron integrase [Teredinibacter turnerae T7901] Length = 322 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 88/297 (29%), Positives = 133/297 (44%), Gaps = 77/297 (25%) Query: 71 IRAFI---SKRRTQKIGDRSLKRSLSGIKSFLKYL---KKRKITTESNILNMRNLKKSNS 124 IR FI +KR ++GDR ++ FL YL + T++ LN + + Sbjct: 31 IRRFIVYSNKRHPAEMGDRE-------VELFLSYLVLERNVAAQTQALALNALSFLYRDI 83 Query: 125 LPRALNEKQALTLVDN-------VLLHTSHETKWIDARNSAILYL----LYGCGLRISEA 173 + R L+ Q L V + V+L T E + + R S + +L LYG GLR+ E+ Sbjct: 84 VNRPLS--QTLRFVHSHAPRKLPVVL-TPDEVRRLLERISPVYFLPAALLYGSGLRLMES 140 Query: 174 LSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS------VRKAILEYYDLCPFDLNLNIQ 226 + L +I + +RI GKG K R V + P V+ +++E Y L L+I Sbjct: 141 VRLRVHDIDFEYCCIRIWNGKGGKHRTVTVAPELLAPLRVQTSVVERY------LALDIN 194 Query: 227 LPLFRGI------RGK-------------------PLNPGV------------FQRYIRQ 249 P + G+ R K ++P Q+ +R+ Sbjct: 195 NPKYGGVWLPSALRRKYTSASKELEWHYLFPSSRLSIDPETGHLASHHICETGLQKAVRK 254 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 + + +AHTLRHSFATHLL +G D+R++Q LGH L TTQIYT+V G Sbjct: 255 AAGVAAISKTVSAHTLRHSFATHLLQSGTDIRTVQEQLGHADLRTTQIYTHVLQMGG 311 >gi|121595668|ref|YP_987564.1| integron integrase [Acidovorax sp. JS42] gi|120607748|gb|ABM43488.1| integron integrase [Acidovorax sp. JS42] Length = 332 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 80/310 (25%), Positives = 142/310 (45%), Gaps = 60/310 (19%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLS 93 T Q+Y R+F++F +K + R++ E+ AF++ ++ + + ++ + Sbjct: 35 TEQAYVDWARRFILF-----HDK---RHPREMGAPEVTAFLTHLAVERNVSASTQNQAKA 86 Query: 94 GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153 I K + + + I++ R K+ LP L +++ V +L+H T+W+ Sbjct: 87 AILFLYKEVLQHDLPWLDEIVSAR---KARRLPVVLTQRE----VRELLMHLQ-GTQWL- 137 Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKG--DKIRIVP--LLPSVRK 208 + LLYG G+RI EAL L +++ ++ L + +GKG D++ ++P L+ +R+ Sbjct: 138 -----VASLLYGTGMRILEALRLRVKDVEFERRELIVREGKGNKDRVTVLPENLITPLRE 192 Query: 209 AILEYYDLCPFDLNLNI----------------------QLPLFRGIRGKPLNPGV---- 242 + L DL+ + Q +R GV Sbjct: 193 QMERARALHRKDLDAGLGAVWLPDALAVKYANAATAWGWQYVFPSAVRSVDPRSGVQRRH 252 Query: 243 ------FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 Q+ + R G+ T H LRHSFATH+L G D+R++Q +LGH +STT Sbjct: 253 HLLEQSVQKAVALAARRAGIDKPCTPHVLRHSFATHMLQAGYDIRTVQELLGHKDVSTTM 312 Query: 297 IYTNVNSKNG 306 IYT+V +K G Sbjct: 313 IYTHVLNKGG 322 >gi|323344112|ref|ZP_08084338.1| tyrosine recombinase [Prevotella oralis ATCC 33269] gi|323094841|gb|EFZ37416.1| tyrosine recombinase [Prevotella oralis ATCC 33269] Length = 345 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 77/296 (26%), Positives = 140/296 (47%), Gaps = 32/296 (10%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEK------ITIQTIRQLSYTEIRAFISKRRTQ 81 ERG+S T++SY F AF+ + K + ++ + + S + ++ ++ Sbjct: 25 ERGVSSHTIRSYSA---TFQSLYAFFKDNKGIRANKLFVKDLSRRSINDYLNWLEMKKGN 81 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKR---KITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 K+ R+ + L+ +K+F Y + + I IL++++ K L ++ TL+ Sbjct: 82 KVPARNSR--LASVKAFCHYAQYKDFKNIARWQEILSIKSKKSDMPCISFLTQEGMKTLL 139 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKI 197 V T R+ AIL LY G R +E +S + N+ + + + GKG K Sbjct: 140 SEVPTDTIQ-----GRRHLAILAFLYDTGARANELISFSAHNLNLTKPYHVVLSGKGRKK 194 Query: 198 RIVPL---LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG----VFQRYIRQL 250 RIVP+ L + KA ++ ++ P +++ + PLF I G+ L + Y ++ Sbjct: 195 RIVPIHEKLVLILKAYMKDTNIEPDNIS---KQPLFVNIHGRRLTSAGLTHIIMMYADKV 251 Query: 251 RRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 R +P + H+ RHS ATHLL G ++ I+ LGH + TT+ Y ++S+ Sbjct: 252 REKHPALMPERLSPHSFRHSKATHLLQAGMNIIYIRDFLGHSSVKTTETYVRMDSE 307 >gi|294499284|ref|YP_003562984.1| phage integrase family protein [Bacillus megaterium QM B1551] gi|294349221|gb|ADE69550.1| phage integrase family protein [Bacillus megaterium QM B1551] Length = 360 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 82/307 (26%), Positives = 143/307 (46%), Gaps = 52/307 (16%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 I++ LS T++SY D + L+F+ E +IT+++I + E++ F + Q +R Sbjct: 52 IKKSLSPHTIRSYNQDMK---TILSFFYEREITLKSI---GFMEVKLFNEEMMNQ-YANR 104 Query: 87 SLKRSLSGIKSFLKY--------------LKKRKITTESNILNMRNLKKSNSLP-RALNE 131 + R L + L++ ++K I+ + + +K N R L + Sbjct: 105 TAARKLEFFRRMLEFGHATHFYPSLYTTWIEKPSISKG----HYSDKEKQNRTEYRELTD 160 Query: 132 KQALTLV---DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-- 186 ++A +V ++V+ HE K ARN + LLY G+R SE LSL + +D+ Sbjct: 161 REAQVIVNALESVVRIRQHE-KEFKARNRLMGMLLYMSGMRSSELLSLNWGSFREDRRGN 219 Query: 187 -TLRIQGKGDKIRIVPLLPSV-------RKAILEYYDLCPFDLNLNIQLPLFRGIR---- 234 + + GKG K R +P+ V R+A+ E +L PFD + PLF I+ Sbjct: 220 LVVDVIGKGKKERTIPVFDDVKETLFTYRQALNESTELSPFDTD-----PLFYSIKEYYR 274 Query: 235 ---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291 K L+ R I+ + S + H RH+F T+ L+N L ++ ++GH Sbjct: 275 TGEKKRLSYTTLYRTIKSAVYKVKGNASISPHWFRHTFITNSLANDVPLAVVKQVVGHSS 334 Query: 292 LSTTQIY 298 ++TT +Y Sbjct: 335 IATTNVY 341 >gi|259909796|ref|YP_002650152.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|224965418|emb|CAX56950.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96] Length = 351 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 87/322 (27%), Positives = 145/322 (45%), Gaps = 31/322 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI--RAFIS 76 ++WL +L + G S T+Q Y R FLA+ IT L+ E R Sbjct: 26 ESWLAHLVVA-GRSPRTVQGYRERVR---AFLAWCEPRGITYAPQVSLAVLEAYQRWLQG 81 Query: 77 KRRT--QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNEKQ 133 RR +++ S L+ I+ ++L +R + + + K+ LP + +E + Sbjct: 82 YRRADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPAQVFSEAE 141 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-G 192 ++ ++ T RN AIL LL+ G+R +E +L ++ + + ++ G Sbjct: 142 TRRVLQSLDAGTP-----PGLRNRAILELLWSTGIRRTELANLLLSDVDAVRGVVNVRRG 196 Query: 193 KGDKIRIVPLLPSVRKAILEYY-DLCP-----FDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 KG + R+VP+ + + Y D+ P FD LF +G L G Sbjct: 197 KGGRDRVVPVGNAALMWLARYLKDVRPRLAQRFDSGH-----LFISHKGTGLAHGTLTAM 251 Query: 247 I-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 R +R L + H RH+ AT +L NG D R IQ+ILGH +L TTQIYT V + Sbjct: 252 AGRAIRSGAHLKKAGACHIFRHTMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGH 311 Query: 306 GGDWMMEIYDQTHPSITQKDKK 327 + +++ THP+ ++ +K Sbjct: 312 ----LQKVHAHTHPAEKRRTEK 329 >gi|116255003|ref|YP_770838.1| putative integrase/recombinase [Rhizobium leguminosarum bv. viciae 3841] gi|115259651|emb|CAK11632.1| putative integrase/recombinase [Rhizobium leguminosarum bv. viciae 3841] Length = 288 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/150 (38%), Positives = 77/150 (51%), Gaps = 8/150 (5%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEY 213 R L Y GLR SEA+ L ++I ++ +R++ GKG K R V L + + Y Sbjct: 123 RTRTALTTAYAAGLRASEAVHLKVRDIDGERGIIRVEHGKGGKDRNVMLSAQLLAILRVY 182 Query: 214 YDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 + L ++ LF G KP++ V R G+ T HTLRHSFATH Sbjct: 183 WRLA------RPEVWLFPGRDETKPIDVQVLYSACRSACTAAGIDKRVTVHTLRHSFATH 236 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 LL +G D+R IQ +LGH LSTT YT V+ Sbjct: 237 LLESGTDIRIIQVLLGHNNLSTTARYTKVS 266 >gi|313903435|ref|ZP_07836826.1| integrase family protein [Thermaerobacter subterraneus DSM 13965] gi|313466256|gb|EFR61779.1| integrase family protein [Thermaerobacter subterraneus DSM 13965] Length = 226 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 90/178 (50%), Gaps = 10/178 (5%) Query: 120 KKSNSLPRALNEKQALTLVDNVL-------LHTSHETKWIDARNSAILYLLYGCGLRISE 172 ++ LP L E +A L+ VL +H + + R+ A++ L GLRISE Sbjct: 22 ERHKRLPVYLAETEAERLLRTVLSDQGLTPRQKAHHAR-LKERDHALVTTLLCQGLRISE 80 Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFR 231 A+ L ++ D+ TLR+ GKGDK R++PL ++A+L Y P Q P++ Sbjct: 81 AVGLRYGDVDFDEDTLRVIGKGDKERLLPLHRRTKEALLRYLATWPGRKKPKAPQDPVWW 140 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289 + G+PL Q +++ GL +AH LRH+F T L G DL I+ +LGH Sbjct: 141 TLTGQPLTKNAAQVAVKRHLVRAGL-WRASAHKLRHTFGTRLAEAGVDLLVIKDLLGH 197 >gi|224369730|ref|YP_002603894.1| phage-specific recombinase/integrase XerD [Desulfobacterium autotrophicum HRM2] gi|223692447|gb|ACN15730.1| phage-specific recombinase/integrase XerD [Desulfobacterium autotrophicum HRM2] Length = 337 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 84/296 (28%), Positives = 134/296 (45%), Gaps = 33/296 (11%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTE------EKITIQTIRQLSYTEIRAFISKRRTQ 81 ++ SK T+ SY DT F + L F E EK+ + + + T+ ++ + R Sbjct: 21 QKNASKNTIASYR-DT--FKLLLRFCLEQKDIPVEKLNMSMLSHVIITDFLEWLEEERKC 77 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-----KKSN--SLPRALNEKQA 134 I R+ + L+ I SF +Y + + S IL+ + + KK+ S+P E Sbjct: 78 CIATRN--QRLAAIHSFFRYAQYEE---PSGILHFQKIIALPIKKAPKPSVPHLTPETMK 132 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRIQGK 193 L LL + R+ +L +LY G R+ E + L +N I+D+ + L + GK Sbjct: 133 L------LLSQPDKMTAKGRRDITLLSVLYDSGCRVQELIDLKIRNVILDNPAVLILTGK 186 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF-RGIRGKPLNPGV---FQRYIRQ 249 G+KIR VPL+ + + Y D + PLF R K G+ +Y+ Sbjct: 187 GNKIRRVPLMRNTLVLLQNYLQEHSLDKDWKRDYPLFINKQRNKLTKEGIAYIISQYVGP 246 Query: 250 LRRY-LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 +R +P T H RHS A HLL +L I+ LGH + TT+IY +S+ Sbjct: 247 AKRMSASMPKKVTPHMFRHSKAVHLLQADVNLIYIRDFLGHQDVRTTEIYAKCDSE 302 >gi|147668730|ref|YP_001213548.1| phage integrase family protein [Dehalococcoides sp. BAV1] gi|146269678|gb|ABQ16670.1| phage integrase family protein [Dehalococcoides sp. BAV1] Length = 319 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 69/274 (25%), Positives = 129/274 (47%), Gaps = 26/274 (9%) Query: 31 LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90 LS T++ Y FL + + + I T+ ++ +R ++ K + ++ S+ Sbjct: 44 LSPHTIRYYTYALNSFLGYC-----QTLGINTVEEIEANHVRLYLVKLQ-ERNNPTSVLD 97 Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150 +K F +L + + ++S + ++ + + R +Q +++ LL T ++ Sbjct: 98 YYKAVKRFFNWLIEEGVLSKSPLATIKPPRTEQKIIRPFTRQQ----IED-LLATCGDSP 152 Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210 I RN A++ + GLR+SE ++ +++ D+ T+ + GKG K R+V + ++ I Sbjct: 153 -IGLRNKAMILTMLDTGLRVSEMSAIQLKDVDFDKETIIVMGKGAKQRVVRIGHKAQETI 211 Query: 211 LEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTL 265 L Y D CP L+ G L+ + +R+L + GL + + HT Sbjct: 212 LRYLLTRQDECP---------ALWMSTTGSGLSTEGIKVVVRELGKRAGLTGVRCSPHTF 262 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 RH+FAT L NG +QS+LGH L T+ YT Sbjct: 263 RHTFATQALINGAGEFEVQSLLGHSTLVMTKRYT 296 >gi|255009008|ref|ZP_05281134.1| putative tyrosine recombinase [Bacteroides fragilis 3_1_12] gi|313146748|ref|ZP_07808941.1| tyrosine type site-specific recombinase [Bacteroides fragilis 3_1_12] gi|313135515|gb|EFR52875.1| tyrosine type site-specific recombinase [Bacteroides fragilis 3_1_12] Length = 379 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 99/205 (48%), Gaps = 18/205 (8%) Query: 99 LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158 +K+ ++ + E + + K+ +LP L++++ L + E D R Sbjct: 171 IKFYYEKVLGNERHCYKVNRAKREKTLPDVLSKEEV-----KDFLTVAKE----DLRFYC 221 Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL-LPSVRKAILEYYDL 216 + LLY GLRISE L+L P +I +S + + QGKG K R L P + K LE Y + Sbjct: 222 MYSLLYSAGLRISELLNLKPDDINISRSLIHVRQGKGKKDRYTLLSKPFINK--LEEYRI 279 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 + LF G + + + ++++ G+ H RHSFATHL+ Sbjct: 280 A-----YQPEKWLFEREAGVQFSESIVSKKLKEIAHEAGITKRVYPHLFRHSFATHLIEQ 334 Query: 277 GGDLRSIQSILGHFRLSTTQIYTNV 301 G DL+ I+ +LGH + TT++Y ++ Sbjct: 335 GTDLKIIKELLGHENIKTTEMYVHI 359 >gi|116254596|ref|YP_770432.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv. viciae 3841] gi|116254608|ref|YP_770444.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv. viciae 3841] gi|116255785|ref|YP_771618.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv. viciae 3841] gi|115259244|emb|CAK10376.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv. viciae 3841] gi|115259256|emb|CAK10389.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv. viciae 3841] gi|115260433|emb|CAK03537.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv. viciae 3841] Length = 286 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/150 (38%), Positives = 77/150 (51%), Gaps = 8/150 (5%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEY 213 R L Y GLR SEA+ L ++I ++ +R++ GKG K R V L + + Y Sbjct: 121 RTRTALTTAYAAGLRASEAVHLKVRDIDGERGIIRVEHGKGGKDRNVMLSAQLLAILRVY 180 Query: 214 YDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 + L ++ LF G KP++ V R G+ T HTLRHSFATH Sbjct: 181 WRLA------RPEVWLFPGRDETKPIDVQVLYSACRSACTAAGIDKRVTVHTLRHSFATH 234 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 LL +G D+R IQ +LGH LSTT YT V+ Sbjct: 235 LLESGTDIRIIQVLLGHNNLSTTARYTKVS 264 >gi|38257059|ref|NP_940713.1| Orf28 [Pseudomonas syringae pv. syringae] gi|37723836|gb|AAR02162.1| Orf28 [Pseudomonas syringae pv. syringae] Length = 319 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 73/295 (24%), Positives = 129/295 (43%), Gaps = 41/295 (13%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W NL+ R T ++Y+ D F F+ + + RQ++ + + A+ + Sbjct: 32 WFANLDNPR-----TRRAYQNDLTDFSSFIGLASADDF-----RQVTRSHVLAWRADLEQ 81 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN---MRNLKKSNSLPRALNEKQALTL 137 + + +++R L+ + S +L + N ++ ++ + AL + QA L Sbjct: 82 RGLAGATIRRKLAALASLFDHLLENNAVAGGNPVHGVKRPRIESNEGKTPALGDHQAKQL 141 Query: 138 VDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194 +D + +T+ + R+ AIL +L GLR EA L ++ + + LR+ GKG Sbjct: 142 LD------APDTETLKGLRDRAILAVLLYHGLRREEAAQLKTGDLQERRGIKHLRVHGKG 195 Query: 195 DKIRIVPLLPSVRKAILEYY------DLCPFDLNLNIQLPLFRGIRGKPLNPGV----FQ 244 KIR +PL P + I Y D P PLFR +RG G+ Sbjct: 196 SKIRFLPLHPVAAERIYAYLEQDVERDAAPG--------PLFRSLRGTTTGAGISANGIY 247 Query: 245 RYIRQLRRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + + G+ + H LR + AT+ L + D+ +Q LGH +STT++Y Sbjct: 248 TVVEACAKKAGIVVEHLGVHGLRATAATNALEHDADIAKVQMWLGHANISTTRLY 302 >gi|295089983|emb|CBK76090.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum K10] Length = 342 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 102/360 (28%), Positives = 159/360 (44%), Gaps = 57/360 (15%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 M N LPE F LL E Q + + + GLS T++SY+ R L+F Y +K Sbjct: 1 MRKNKLPE---FTLLLE-QFFTEYMPFSSGLSPNTIRSYKHSFR--LLFQYIYQVQKKNA 54 Query: 61 QTI--RQLSYTEIRAF---ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI---TTESN 112 I R L Y I F I R R+L+ LS + SF Y + R T +N Sbjct: 55 DEILFRDLDYETIDGFLKWIETERGCSASTRNLR--LSALASFSFYAQNRNFEAATVFAN 112 Query: 113 ILNMRNLKKSNSLPR---ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169 + +KK PR +L+E +VLLH + K + R+ +L L+Y G R Sbjct: 113 AVRRTPVKKEAIQPRITFSLDEV-------SVLLHLPNPQKRLGFRDQVLLNLMYASGAR 165 Query: 170 ISEALSLTPQNIMDDQS--TLRIQGKGDKI-RIVPLLPS-----------VRKAILEYYD 215 E L ++ +++ L I GKG+K RIV PS R LE Y Sbjct: 166 AQEICDLKVRDFFVEKNLYKLTITGKGNKTRRIVIAKPSGILLKRYLEETGRAGQLETYI 225 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR-YLGLPLST--TAHTLRHSFATH 272 F + Q+ + ++++YI R + G+ L T HT+RH+ ATH Sbjct: 226 ---FSSQTHPQMTI-------SCVEEIYKKYIALARAGHPGMFLEKRYTPHTMRHTTATH 275 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVN----SKNGGDWMMEIYDQTHPSITQKDKKN 328 +L G + +I++ LGH +STT+ Y ++ +++ DW + + ++ K+N Sbjct: 276 MLEAGVPIVAIKNFLGHSSISTTERYAELSQGTVNRHIRDWNEKWFSHQKEEPVERKKEN 335 >gi|291522920|emb|CBK81213.1| Site-specific recombinase XerD [Coprococcus catus GD/7] Length = 280 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 69/292 (23%), Positives = 127/292 (43%), Gaps = 28/292 (9%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 + +E N +++ +R L T+ +Y FL T + I L+ ++ Sbjct: 1 MYEEIFNQIRSAANKRNLKDSTIHAYCTSVAHFL---------NHTAKDIDALTTDDVDT 51 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 F+++++ I + SGI+ F K + K + ++ +K+ LP L + + Sbjct: 52 FLTEKKLSGISPETYNHYHSGIRFFYKKVLKMNWDDD----DIPRMKRDRKLPAVLTKAE 107 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-G 192 ++D + ++ A++ +Y GLR+SE L +I T+ I+ G Sbjct: 108 ISAILDAT----------PNLKHKAMIATMYSGGLRVSEVTHLHYDDISRTNKTIHIRDG 157 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 K R L + + EY+ C I P G L ++ R+ Sbjct: 158 KSRSDRYTLLADRTLEILTEYWFQCG--RPRGILFP--SSWTGDYLTKDSVIQFFRESAE 213 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 G+ + H LRHSFA+HL +G D++ IQ++LGH +T+IY +V++K Sbjct: 214 RAGIQKHVSTHCLRHSFASHLFESGCDIKYIQALLGHRDPKSTEIYLHVSNK 265 >gi|153822305|ref|ZP_01974972.1| site-specific tyrosine recombinase [Vibrio cholerae B33] gi|229508697|ref|ZP_04398190.1| integron integrase [Vibrio cholerae B33] gi|229608748|ref|YP_002879396.1| integron integrase [Vibrio cholerae MJ-1236] gi|255743891|ref|ZP_05417847.1| integron integrase [Vibrio cholera CIRS 101] gi|126520201|gb|EAZ77424.1| site-specific tyrosine recombinase [Vibrio cholerae B33] gi|229354221|gb|EEO19151.1| integron integrase [Vibrio cholerae B33] gi|229371403|gb|ACQ61826.1| integron integrase [Vibrio cholerae MJ-1236] gi|255738522|gb|EET93911.1| integron integrase [Vibrio cholera CIRS 101] Length = 319 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 68/248 (27%), Positives = 120/248 (48%), Gaps = 51/248 (20%) Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150 +L I K++ +R++T + + R K+ +P L+ +A+++++ Sbjct: 72 ALCAIVFMYKHILQRELTLLPDTIKARAPKR---VPSVLSHNEAMSIINQ---------- 118 Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKG--DKIRIVP--LLPS 205 + + LLYGCGLR +E L L ++I + ++ +GKG D+++++P L+ Sbjct: 119 -LSGSYKLMFSLLYGCGLRKAELLMLRVKDIDFESRNVYVFRGKGGKDRVKMLPEKLVEP 177 Query: 206 VRKAI-----LEYYDLC----------------PFDL-NLNIQLPLFRGIRGK-PLNPGV 242 ++ I L DLC P+ + + Q +R K P++ V Sbjct: 178 LKLHIEKVRDLHEKDLCEGEGKTSLPSGLARKYPYAISDFKWQFIFPSSVRCKHPVDGYV 237 Query: 243 FQRYI------RQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 + ++ ++LR + G+ TAH RHSFAT LL G D+R++Q +LGH L Sbjct: 238 CRHHLHWTSLTKKLRSAVIRSGVQKHVTAHIFRHSFATQLLKAGTDIRTVQELLGHSDLK 297 Query: 294 TTQIYTNV 301 TTQIYT+V Sbjct: 298 TTQIYTHV 305 >gi|163751332|ref|ZP_02158558.1| site-specific recombinase, phage integrase family protein [Shewanella benthica KT99] gi|161328741|gb|EDP99888.1| site-specific recombinase, phage integrase family protein [Shewanella benthica KT99] Length = 312 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 75/287 (26%), Positives = 127/287 (44%), Gaps = 69/287 (24%) Query: 71 IRAFI---SKRRTQKIGDRSLKRSLSGIK--------------SFLKYLKKRKITTESNI 113 I+ FI K+ Q +G++ ++R L+ + + +L + I + + Sbjct: 25 IKGFIVFNDKKHPQDMGNQEIERFLNHLAVNRQVSGATQNQALCAIIFLYRHIIQRDISG 84 Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173 L K+ S+P L ++A ++D ++ + I LLYG GLRI+EA Sbjct: 85 LRYSFTKREKSMPTVLTHEEARAIIDR-----------LNGKYWLIASLLYGSGLRINEA 133 Query: 174 LSLTPQNI-MDDQSTLRIQGKGDKIRIVPL----------------------------LP 204 L L ++I ++D + +GKG K R L L Sbjct: 134 LQLRIKDINLNDNTLFIFRGKGKKDRYTLLPRSLKPEVELQMTHVKERHSQDLSEGFGLT 193 Query: 205 SVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYI------RQLRRYL--- 254 S+ A+L Y D++ P R + P + + + +I +QLR+ + Sbjct: 194 SLPPALLRKYGDAAKDISWQYFFPSTTRCVH--PYDGYICRHHIHETSFRKQLRKAVIAT 251 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +P AHT RHSFAT LL +G D+R++Q +LGH + TT++YT+V Sbjct: 252 QIPKQVKAHTFRHSFATQLLQHGSDIRTVQELLGHTDVKTTELYTHV 298 >gi|148264909|ref|YP_001231615.1| integron integrase [Geobacter uraniireducens Rf4] gi|146398409|gb|ABQ27042.1| integron integrase [Geobacter uraniireducens Rf4] Length = 452 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 81/310 (26%), Positives = 134/310 (43%), Gaps = 59/310 (19%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ-LSYTEIRAFISKRRTQKIGDRS 87 R S+ TL++Y +RQF FL ++++ +++ L+Y ++ ++ TQ Sbjct: 150 RHYSRKTLKTYALWSRQFQRFLKNKPPQELSTADVKEYLTYLAVKCHVAAS-TQN----- 203 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 ++ + + ++ +R + ++ KKS +P L+ + +D +L SH Sbjct: 204 --QAFNSLLFLFRHALQRDF---GELRDVPRAKKSLYIPAVLSRLE----IDAILEQLSH 254 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV- 206 + ++ +L+GCGLR+ E L L ++ D + L + GKG K R VPL S+ Sbjct: 255 PY-------NLVVKMLFGCGLRLFEGLQLRVRDFNFDVNILTVHGKGKKDRTVPLPESIL 307 Query: 207 --------RKAILEYYDLCP------FDLNLNIQLP----------LF----------RG 232 R +L DL D + + P F G Sbjct: 308 TELKAQIKRVGVLHDRDLVAGYDGVFLDDAVERKYPNAAKEFIHQWFFPQQSLTMVEETG 367 Query: 233 IRGK-PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291 R + L+ Q + R +P T+H RHSFATHLL D+R IQ +LGH Sbjct: 368 ERRRWHLHESELQEALYHAVRRAKIPKRVTSHIFRHSFATHLLQANYDIRVIQKLLGHAS 427 Query: 292 LSTTQIYTNV 301 L TT IYT+ Sbjct: 428 LKTTMIYTHC 437 >gi|557887|gb|AAA50502.1| integrase [Bergeyella zoohelcum] gi|1098132|prf||2115270D integrase Length = 259 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 98/200 (49%), Gaps = 27/200 (13%) Query: 112 NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171 + L++ +K+ LP L++++ ++ L ++ ++ +LYGCGLR Sbjct: 55 DFLSLPEIKREKKLPVVLSKQEVWQMLSGCKL----------LKHKILIGILYGCGLRCM 104 Query: 172 EALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPL 229 E +L ++ D+ L++ QGKG K R +PL + + + +Y + P D L Sbjct: 105 EVRNLRLCDLDFDRKQLKVVQGKGKKDRYLPLSEHLIRGLKKYIEAEKPEDY-------L 157 Query: 230 FRGIRGKPLNPGVFQRY--------IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281 F RG RY ++Q + + + HTLRHSFATHLL +G D+ Sbjct: 158 FGEPRGNRAGGEFDSRYSQRGVQWAVKQASKTANILKEVSVHTLRHSFATHLLEDGMDIL 217 Query: 282 SIQSILGHFRLSTTQIYTNV 301 SI+++LGH + TT IY + Sbjct: 218 SIKNLLGHESIDTTLIYLQI 237 >gi|167040254|ref|YP_001663239.1| site-specific tyrosine recombinase XerC [Thermoanaerobacter sp. X514] gi|300914338|ref|ZP_07131654.1| integrase family protein [Thermoanaerobacter sp. X561] gi|307724426|ref|YP_003904177.1| integrase family protein [Thermoanaerobacter sp. X513] gi|166854494|gb|ABY92903.1| phage integrase family protein [Thermoanaerobacter sp. X514] gi|300889273|gb|EFK84419.1| integrase family protein [Thermoanaerobacter sp. X561] gi|307581487|gb|ADN54886.1| integrase family protein [Thermoanaerobacter sp. X513] Length = 330 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 84/308 (27%), Positives = 148/308 (48%), Gaps = 34/308 (11%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL----------AFYTE---EKITI 60 LL+E N+ + + S T+++Y D FL FL + E + + Sbjct: 20 LLEEFLNYFSTV---KARSYNTVKAYAYDLVLFLRFLKQRRRKVSPDVEFDEIDISDVDV 76 Query: 61 QTIRQLSYTEIRA---FISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNM 116 I + ++ A F++ R+ R+ R ++ ++SF YL KK K+ +++ + Sbjct: 77 DLIESVDLNDLYAYLNFVANERSNTPHARA--RKVASLRSFYNYLYKKAKVLSKNPTQEL 134 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 + K S P L ++ L++++ R+ AI+ L CGLR+SE +++ Sbjct: 135 ESPKLSVRQPIYLTLDESKKLLNSI-------DGPFKERDYAIITLFLNCGLRVSELVNI 187 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 +I DD+ L + GKG+K R V L + AI Y + P + + + LF R K Sbjct: 188 NLDDIKDDK--LTVIGKGNKQRTVYLNDACINAINTYLKVRPKE-GVKDKKALFLSKRLK 244 Query: 237 PLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLST 294 ++ Q +++ + L +AH LRH+ AT + G D+R++Q +LGH +ST Sbjct: 245 RISVKTVQYTVKKHLKNANLEGKKYSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVST 304 Query: 295 TQIYTNVN 302 TQIYT+V+ Sbjct: 305 TQIYTHVD 312 >gi|295704637|ref|YP_003597712.1| phage integrase family protein [Bacillus megaterium DSM 319] gi|294802296|gb|ADF39362.1| phage integrase family protein [Bacillus megaterium DSM 319] Length = 360 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 82/307 (26%), Positives = 142/307 (46%), Gaps = 52/307 (16%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 I++ LS T++SY D + L+F+ E +IT+++I + E++ F + Q +R Sbjct: 52 IKKSLSPHTIRSYNQDMK---TILSFFYEREITLKSI---GFMEVKLFNEEMMNQ-YANR 104 Query: 87 SLKRSLSGIKSFLKY--------------LKKRKITTESNILNMRNLKKSNSLP-RALNE 131 + R L + L++ ++K I + + +K N R L + Sbjct: 105 TAARKLEFFRRMLEFGHATHFYPSLYTTWIEKPSIAKG----HYSDKEKQNRTEYRELTD 160 Query: 132 KQALTLV---DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-- 186 ++A +V ++V+ HE K ARN + LLY G+R SE LSL + +D+ Sbjct: 161 REAQVIVNALESVVRIRQHE-KEFKARNRLMGMLLYMSGMRSSELLSLNWGSFREDRRGN 219 Query: 187 -TLRIQGKGDKIRIVPLLPSV-------RKAILEYYDLCPFDLNLNIQLPLFRGIR---- 234 + + GKG K R +P+ V R+A+ E +L PFD + PLF I+ Sbjct: 220 LVVDVIGKGKKERTIPVFDDVKETLFTYRQALNESTELSPFDTD-----PLFYSIKEYYR 274 Query: 235 ---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291 K L+ R I+ + S + H RH+F T+ L+N L ++ ++GH Sbjct: 275 TGAKKRLSYTTLYRTIKSAVYKVKGNASISPHWFRHTFITNSLANDVPLAVVKQVVGHSS 334 Query: 292 LSTTQIY 298 ++TT +Y Sbjct: 335 IATTNVY 341 >gi|310764968|gb|ADP09918.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 351 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 87/324 (26%), Positives = 143/324 (44%), Gaps = 35/324 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF---- 74 ++WL +L G S T+Q Y R FL + E I+ Q+S + ++ Sbjct: 26 ESWLSHLAAA-GRSPRTVQGYGERVRAFLAWC-----EPRGIRYAPQVSLAVLESYQRWL 79 Query: 75 --ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNE 131 K +++ S L+ I+ ++L +R + + + K+ LP + +E Sbjct: 80 QGYRKADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPAQVFSE 139 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 + ++ ++ T RN AIL LL+ G+R SE L ++ + + ++ Sbjct: 140 DETRRVLQSLDAGTP-----PGLRNRAILELLWSSGIRRSELAGLLLSDVDFTRGVVNVR 194 Query: 192 -GKGDKIRIVPLLPSVRKAILEYY-DLCP-----FDLNLNIQLPLFRGIRGKPLNPGVFQ 244 GKG K R+VP+ + + Y D+ P FD LF +G L G Sbjct: 195 RGKGGKDRVVPVGHAALIWLGRYLQDVRPRLAQRFDSGH-----LFISHKGTGLAHGTLT 249 Query: 245 RYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 R +R L + H RHS AT +L NG D R IQ+ILGH +L TTQIYT V Sbjct: 250 AMAGRAIRSGAHLKKAGACHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAI 309 Query: 304 KNGGDWMMEIYDQTHPSITQKDKK 327 + + +++ THP+ + +K Sbjct: 310 GH----LQKVHAHTHPAEKGRTEK 329 >gi|167037592|ref|YP_001665170.1| site-specific tyrosine recombinase XerC [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256750822|ref|ZP_05491707.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1] gi|320116007|ref|YP_004186166.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856426|gb|ABY94834.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256750405|gb|EEU63424.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1] gi|319929098|gb|ADV79783.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 330 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 85/308 (27%), Positives = 149/308 (48%), Gaps = 34/308 (11%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL----------AFYTEEKIT---I 60 LL+E N+ + + S T+++Y D FL FL + E I+ + Sbjct: 20 LLEEFLNYFSTV---KARSYNTVKAYAYDLVLFLRFLKQRRGKVSPDVEFDEIDISDVDV 76 Query: 61 QTIRQLSYTEIRA---FISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNM 116 I + ++ A F++ R+ R+ R ++ ++SF YL KK K+ +++ + Sbjct: 77 DLIESVDLNDLYAYLNFVANERSNTPHARA--RKVASLRSFYNYLYKKAKVLSKNPTQEL 134 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 + K S P L ++ L++++ R+ AI+ L CGLR+SE +++ Sbjct: 135 ESPKLSVRQPIYLTLDESKKLLNSI-------DGPFKERDYAIITLFLNCGLRVSELVNI 187 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 +I DD+ L + GKG+K R V L + AI Y + P + + + LF R K Sbjct: 188 NLDDIKDDK--LTVIGKGNKQRTVYLNDACINAINTYLKVRPKE-GVKDKKALFLSKRLK 244 Query: 237 PLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLST 294 ++ Q +++ + L +AH LRH+ AT + G D+R++Q +LGH +ST Sbjct: 245 RISVKTVQYTVKKHLKNANLEGKKYSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVST 304 Query: 295 TQIYTNVN 302 TQIYT+V+ Sbjct: 305 TQIYTHVD 312 >gi|313637890|gb|EFS03211.1| tyrosine recombinase XerC [Listeria seeligeri FSL S4-171] Length = 291 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 88/172 (51%), Gaps = 11/172 (6%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGKGDKIRIVPLLPSVRKAI 210 + A I L+ G+R+SE LS N++D + T+ I GKG+K RI+ + + Sbjct: 125 VTAYQEFIFDFLFSTGIRVSE-LSSIKINLIDLENRTILITGKGNKERIIFYNDKLEHKL 183 Query: 211 LEYYDLCPFDLNLNIQLPLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 + + L + N + + I+ GKP+ I ++ + + L HTLRH Sbjct: 184 IRFLKLRHQIMEFNKKYHSYLFIKLTTGKPVTNNFIYYEIVKIGKLYDINLH--PHTLRH 241 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 SFAT+LL NG D+R IQ LGH + TTQ YT++ KN + +M + HP Sbjct: 242 SFATNLLENGCDIRYIQEFLGHSSILTTQRYTHLQLKNKTNTIM----KHHP 289 >gi|302874927|ref|YP_003843560.1| integrase family protein [Clostridium cellulovorans 743B] gi|307690455|ref|ZP_07632901.1| integrase family protein [Clostridium cellulovorans 743B] gi|302577784|gb|ADL51796.1| integrase family protein [Clostridium cellulovorans 743B] Length = 276 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 80/270 (29%), Positives = 122/270 (45%), Gaps = 32/270 (11%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T++SY+ D QF+ F+ EE IT + I L Y E A ++ +S R Sbjct: 20 TIESYKGDVIQFMNFIEKEPEE-ITKEDI--LKYKEYLAL------NEMSVKSANRKYIS 70 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + SF +L+ T + MR K L E A +N++ S + D Sbjct: 71 VNSFFSFLQ----TELEKDVQMRIKKDKIQNQEYLEEMLAKEDFENLVQVAS---SYNDY 123 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R AI L+ G+RISEAL L +I +D + I+GKG K R V +P K+IL Y Sbjct: 124 RAVAIFNTLFYTGMRISEALQLKTTDISND--VVVIKGKGSKHRNV-FIPQKLKSILNTY 180 Query: 215 DL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSF 269 + C D LF G +G P+N I++ G+ ++ AH RH + Sbjct: 181 MIYRLPCKSD-------ALFTGKKG-PINRKTVDAIIKKYAAIAGISMTKAHAHNFRHLY 232 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 L+ G + ++ + GH ++TT+IYT Sbjct: 233 CLTLIEKGLTIDTVADLAGHSNINTTRIYT 262 >gi|326794173|ref|YP_004311993.1| integrase family protein [Marinomonas mediterranea MMB-1] gi|326544937|gb|ADZ90157.1| integrase family protein [Marinomonas mediterranea MMB-1] Length = 323 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 85/313 (27%), Positives = 138/313 (44%), Gaps = 53/313 (16%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +LQ + R LS TL++Y D +QF+ T ++ + ++ F Sbjct: 11 YLQFCQKNRKLSGHTLKAYRIDLKQFVECTGVKT-------SVNAIDKKDLHKFHDYLAD 63 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALNE---KQAL 135 ++ S+KR L+ I++ ++L++ + T + N ++K LPR +N+ K+ L Sbjct: 64 SELSQSSIKRKLACIRAMFRWLEQEEEIEVTPFHKFNT-SIKLPKRLPRNVNKSDLKRML 122 Query: 136 TLVDNVLLHTSHETKWIDARNSAILY-----------------LLYGCGLRISEALSLTP 178 T L K I N+ Y L+ G+R+SE + + Sbjct: 123 TQGRRTL--DQKPLKSISDENTGFSYPTSKRDLNKLTGTLALELMLSTGMRVSELVGIQL 180 Query: 179 QNIMDDQSTLRIQGKGDKIR--------IVPLLPSVRKA--ILEYYDLCPFDLNLNIQLP 228 +I + ++I GKG + R I L+ RKA I+E D F LN Sbjct: 181 DDIFLTERKIKIFGKGSRERYVYLPDKEICQLIRHYRKARTIVES-DSSNFLLN------ 233 Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288 RG+P + ++ IR L L T H LRHS A L+ +G D+R +Q +LG Sbjct: 234 ----SRGQPASTQFIRKLIRLLAEQSSTQLHVTPHMLRHSAACELMESGLDIRFVQRLLG 289 Query: 289 HFRLSTTQIYTNV 301 H +STT+IYT+V Sbjct: 290 HSSISTTEIYTHV 302 >gi|325474369|gb|EGC77557.1| DNA integrase [Treponema denticola F0402] Length = 426 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 87/320 (27%), Positives = 143/320 (44%), Gaps = 59/320 (18%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 N L+ + + SK T+++Y +F+ E K + ++ LS TEI AF+S+ Sbjct: 113 NKLEEVITAKHYSKRTMEAYSYWISRFI------RENKN--KNLKTLSDTEINAFVSRLA 164 Query: 80 T-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 +K S ++L+ + K + I T NI+ + KK LP A+ ++ + Sbjct: 165 VKEKAAASSQNQALAALLFLYKNILGLTIKTPENIVRAKKPKK---LP-AIMTREETAKI 220 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKI 197 ++L + ++ LLYG G+R+ EAL L Q+I ++ + + GKG K Sbjct: 221 FSLLPENDY---------GLLIRLLYGTGMRLMEALRLRIQDIDFGKNEITVHCGKGAKD 271 Query: 198 R--IVPL---------LPSVR-----------------KAILEYYDLCPFDLNLNIQLPL 229 R ++P+ L +VR A+ + Y P Sbjct: 272 RKTVLPVSLKFPLQKHLENVRLIHEADCKDGFGSVPLPSALAKKYPAAGKAWAWQWVFPQ 331 Query: 230 FR-------GIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281 R G +G+ ++P V QR + + G+P HT RHSFATHLL D+R Sbjct: 332 ARRWQNKETGEQGRHHIDPSVIQRTLHEAVLKSGIPKPIGCHTFRHSFATHLLEASYDIR 391 Query: 282 SIQSILGHFRLSTTQIYTNV 301 +IQ +LGH + TT +YT+V Sbjct: 392 TIQELLGHSDVKTTMVYTHV 411 >gi|289450299|ref|YP_003475200.1| site-specific tyrosine recombinase XerC [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184846|gb|ADC91271.1| site-specific tyrosine recombinase XerC [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 366 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 84/313 (26%), Positives = 143/313 (45%), Gaps = 40/313 (12%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY----------------TEEKITIQTI 63 ++L L +G S LT++ Y D ++F +Y + IT + Sbjct: 47 DFLAYLSGIKGRSALTIKEYHYD---LVLFFRYYKILQKRVPHDLDFRAIPLDDITEADL 103 Query: 64 RQLSYTEIRAFI---SKRRTQKIGDRSLKRSLSGIKSFLKYLK-KRKITTESNILNMRNL 119 Q+ + +FI + + +RS R ++ ++SF KY K ++ E+ + + Sbjct: 104 NQIDLKILYSFIGWLANEKKASTANRS--RKIATLRSFFKYHHTKTRLIKENPAAELESP 161 Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 K+ PR L +++ L+ V S+ ++ R+ IL L CGLR++E + Sbjct: 162 KQLKKQPRYLEVEESKQLLQTVAQANSNFSQ----RDYCILTLFLNCGLRLAELCGINLG 217 Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-------NIQLPLFRG 232 +I +D TLR+ GKG K R V L + A+ Y N + PLF Sbjct: 218 DIGED--TLRVLGKGGKERTVYLNGACIAALNAYLPERKQQKNSFNSAEKKQAETPLFIS 275 Query: 233 IRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHF 290 +G ++ Q +R+ GL P T H LRH+ AT + G D+R +Q ILGH Sbjct: 276 RQGNRISHPAVQLLVRKYIILAGLDPHKYTPHKLRHTAATLMYKYGHVDIRMLQQILGHS 335 Query: 291 RLSTTQIYTNVNS 303 ++TT+IYT++++ Sbjct: 336 SVATTEIYTHLDA 348 >gi|124010377|ref|ZP_01695023.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134] gi|123983544|gb|EAY24009.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134] Length = 295 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 83/300 (27%), Positives = 133/300 (44%), Gaps = 28/300 (9%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 E L+ + WL++L G + T Y R+FL FL + + + + + Sbjct: 13 EHLQGFEAWLRSL----GYASSTCDKYPRQLREFLYFLE--QQGRFGLAEVGASDVSAYF 66 Query: 73 AFISKRRTQKIGD-------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 ++S RR+ K G+ RS++++L G F +YL+ + S L +L ++ Sbjct: 67 DYLSGRRSVKTGELLSHSHLRSVRKTLRG---FQRYLRSLGVPVFS--LPGVSLPGLSAA 121 Query: 126 P-RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 P R L+ + L D W R+ A+L L YGCGLR SE L ++ Sbjct: 122 PIRVLSRVEVGLLYDGCGF-----DHW-GLRDQALLSLGYGCGLRRSEIHLLDVGDVHFK 175 Query: 185 QSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR-GIRGKPLNPGV 242 + +++ GKG K R VP++ V+ + Y + P F RG L P Sbjct: 176 KGWVQVLSGKGRKERFVPMVGRVKDDLYAYLTEGRRFFSGRSPSPAFLLSQRGHRLGPKS 235 Query: 243 FQRYIRQLRRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + +L L + H+LRHS ATHL + G L + LGH L +TQ+YT++ Sbjct: 236 LSERLEKLATKAELSGGSVGLHSLRHSIATHLHNGGMSLSKVSLFLGHSSLDSTQLYTHL 295 >gi|283479890|emb|CAY75806.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163] Length = 351 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 87/322 (27%), Positives = 144/322 (44%), Gaps = 31/322 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI--RAFIS 76 ++WL +L + G S T+Q Y R FLA+ IT L+ E R Sbjct: 26 ESWLAHLVVA-GRSPRTVQGYRERVR---AFLAWCEPRGITYAPQVSLAVLEAYQRWLQG 81 Query: 77 KRRT--QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNEKQ 133 RR +++ S L+ I+ ++L +R + + + K+ LP + +E + Sbjct: 82 YRRADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPAQVFSEAE 141 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-G 192 ++ ++ T RN AIL LL+ G+R +E +L ++ + + ++ G Sbjct: 142 TRRVLQSLDAGTP-----PGLRNRAILELLWSTGIRRTELANLLLSDVDAVRGVVNVRRG 196 Query: 193 KGDKIRIVPLLPSVRKAILEYY-DLCP-----FDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 KG + R+VP+ + + Y D+ P FD LF +G L G Sbjct: 197 KGGRDRVVPVGNAALMWLARYLKDVRPRLAQRFDSGH-----LFISHKGTGLAHGTLTAM 251 Query: 247 I-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 R +R L + H RH AT +L NG D R IQ+ILGH +L TTQIYT V + Sbjct: 252 AGRAIRSGAHLKKAGACHIFRHXMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGH 311 Query: 306 GGDWMMEIYDQTHPSITQKDKK 327 + +++ THP+ ++ +K Sbjct: 312 ----LQKVHAHTHPAEKRRTEK 329 >gi|297570372|ref|YP_003691716.1| integron integrase [Desulfurivibrio alkaliphilus AHT2] gi|296926287|gb|ADH87097.1| integron integrase [Desulfurivibrio alkaliphilus AHT2] Length = 465 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 66/224 (29%), Positives = 101/224 (45%), Gaps = 45/224 (20%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 K+ LP L+ + + L++ + + I A + + LLYG GLR+ E + L Q Sbjct: 240 KQPRRLPVVLSRSETVRLLEAL--------REISALHHLMASLLYGTGLRLMECVRLRVQ 291 Query: 180 NIMDDQSTLRIQ-GKGDKIRIVPLLPSV----RKAILEYYDLCPFDLNLN---IQLPLFR 231 ++ D + ++ GKG K R+VPL V R + E L DL + LP Sbjct: 292 DVDFDLGQIMVRDGKGQKDRVVPLPQGVQEPLRDHLAEVRRLHEEDLAQGLGEVYLPEAL 351 Query: 232 G-----------------------------IRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 G +R ++ Q+ I++ GL Sbjct: 352 GRKYPNAAREWGWQFVFPSGRLSTDPRSGVVRRHHIHENGLQKSIKKATLAAGLTKRVNC 411 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 H LRHSFATHLL+ G D+R++Q +LGH +STT IYT+V ++ G Sbjct: 412 HALRHSFATHLLAAGYDIRTVQELLGHADVSTTMIYTHVLNRGG 455 >gi|307267401|ref|ZP_07548893.1| integrase family protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306917586|gb|EFN47868.1| integrase family protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 330 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 84/308 (27%), Positives = 148/308 (48%), Gaps = 34/308 (11%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL----------AFYTE---EKITI 60 LL+E N+ + + S T+++Y D FL FL + E + + Sbjct: 20 LLEEFLNYFSTV---KARSYNTVKAYAYDLVLFLRFLKQRRGKVSPNVEFDEIDISDVDV 76 Query: 61 QTIRQLSYTEIRA---FISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNM 116 I + ++ A F++ R+ R+ R ++ ++SF YL KK K+ +++ + Sbjct: 77 DLIESVDLNDLYAYLNFVANERSNTPPARA--RKVASLRSFYNYLYKKAKVLSKNPTQEL 134 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 + K S P L ++ L++++ R+ AI+ L CGLR+SE +++ Sbjct: 135 ESPKLSVRQPIYLTLDESKKLLNSI-------DGPFKERDYAIITLFLNCGLRVSELVNI 187 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 +I DD+ L + GKG+K R V L + AI Y + P + + + LF R K Sbjct: 188 NLDDIKDDK--LTVIGKGNKQRTVYLNDACINAINTYLKVRPKE-GVKDKKALFLSKRLK 244 Query: 237 PLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLST 294 ++ Q +++ + L +AH LRH+ AT + G D+R++Q +LGH +ST Sbjct: 245 RISVKTVQYTVKKHLKNANLEGKKYSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVST 304 Query: 295 TQIYTNVN 302 TQIYT+V+ Sbjct: 305 TQIYTHVD 312 >gi|332532602|ref|ZP_08408479.1| integron integrase IntI4 [Pseudoalteromonas haloplanktis ANT/505] gi|332038023|gb|EGI74471.1| integron integrase IntI4 [Pseudoalteromonas haloplanktis ANT/505] Length = 320 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 68/259 (26%), Positives = 113/259 (43%), Gaps = 52/259 (20%) Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q + + ++L+ + K + K+ ++ L K++ LP L +++ ++N Sbjct: 61 QNVAPNTQAQALNALSFLFKEVIKKPLSLS---LGFIKSKRATKLPVVLTQQE----INN 113 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRI 199 K A++ LLYG G+R+ E L L +I D + +RI GKG K R+ Sbjct: 114 FF-------KVCSAKHYLPCGLLYGSGMRLMEVLRLRIHDIDFDYNCIRIWDGKGGKNRV 166 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG--------------------------- 232 V L + + L L L+++ PL+ G Sbjct: 167 VTLAVELTPQLRSQIQLVDSYLQLDLKNPLYSGAYMPHLLRKKYPNHNRQLGWQYLFSSH 226 Query: 233 ----------IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282 +R ++ QR +++ + T HTLRHSFATHLL +G D+R+ Sbjct: 227 KLSIDPESKQLRRHHIDEKQLQRAVKKAAFDAHINKHVTPHTLRHSFATHLLQSGADIRT 286 Query: 283 IQSILGHFRLSTTQIYTNV 301 +Q+ LGH + TTQIYT+V Sbjct: 287 VQTQLGHSDVRTTQIYTHV 305 >gi|295100462|emb|CBK98007.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6] Length = 340 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 78/309 (25%), Positives = 142/309 (45%), Gaps = 27/309 (8%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTE-EKITIQ--TIRQLSYTEIRAFISKRRTQKI-G 84 + +S T+ SY CD F +FL + + E + I+ +I L+ + F+ R ++ G Sbjct: 22 KNISTNTISSY-CDA--FRLFLGYCQDVEGMRIEKLSIDDLTPELVDHFLQWLRIERNNG 78 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE--KQALTLVDNVL 142 + + L+ I+SF+KYL+ ++ N + + + +A+N K+A+ L+ Sbjct: 79 TATRSQRLAAIRSFVKYLQIKEPRLLLNFQQILAIPVKRAERKAINPLTKEAIALI---- 134 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVP 201 L + R++ IL LY R+ E L +++ +D ++++I GKG K R+VP Sbjct: 135 LRQPDTSTLSGRRDATILCFLYDTAARVQEICDLRIEDVRLDYPASVKILGKGRKTRVVP 194 Query: 202 LLPS----VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG----VFQRYIRQLRRY 253 +LP+ ++K + E + L P LPLF G+ L + +Y + Sbjct: 195 ILPATAQNLKKYLTEMHMLAP----EKSHLPLFMNRNGQKLTRAGVTYILNKYAKAASVI 250 Query: 254 -LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 +P H +RH+ A H+ DL ++ LGH + TT IY + + Sbjct: 251 DPSVPEKIPPHLMRHTKAMHIYDADNDLVHVRDFLGHSDIKTTDIYARSSLTMKQKALER 310 Query: 313 IYDQTHPSI 321 + D PS+ Sbjct: 311 VSDSPVPSM 319 >gi|265763570|ref|ZP_06092138.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_16] gi|263256178|gb|EEZ27524.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_16] Length = 352 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 74/300 (24%), Positives = 139/300 (46%), Gaps = 23/300 (7%) Query: 21 WLQ-NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT-----EIRAF 74 WL+ ++ + S T ++YE +++FL + ++I+ +T+ ++ E + Sbjct: 18 WLEYHVPSIKACSPYTKRNYETSVALYVMFLR--SVKQISPKTLSAQCFSLENMNEWILW 75 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 + + R+ +++ LS +++FLKY+ + I ++ L + + R + Sbjct: 76 LKEHRSCSPATCNVR--LSALRAFLKYMADKDIAFMTSYLQAETVPNQKTPKRKVVGLSK 133 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--G 192 + + N L ++ R+ ++ LY +RI+E LSL NI D RI G Sbjct: 134 MAV--NALFTVPNQRTIRGLRDYTLMLTLYSTAVRINELLSLKIGNIFTDGPKPRIIVIG 191 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 KG K R +PLL + I +Y C + N L + RG + P + + L+R Sbjct: 192 KGRKKRPIPLLAKPVQYIKQYLAECHPNPNNPDALLFYSKSRGIYV-PMSAENVNKLLKR 250 Query: 253 YLGL--------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 Y + PL+ AH RH+ A+H L NG ++ I +LGH + TT +Y ++ ++ Sbjct: 251 YAAIAKKICKEVPLNLHAHQFRHAKASHWLENGMNIAQISYLLGHECIQTTMVYLDITTE 310 >gi|89899991|ref|YP_522462.1| phage integrase [Rhodoferax ferrireducens T118] gi|89344728|gb|ABD68931.1| phage integrase [Rhodoferax ferrireducens T118] Length = 291 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 66/201 (32%), Positives = 97/201 (48%), Gaps = 22/201 (10%) Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169 E + M++++ + LP L++++ L+ V H H+T L L YG GLR Sbjct: 90 EEVMAKMQSVRVPHRLPVVLSKEEVARLLAAVG-HIKHQTA---------LSLAYGTGLR 139 Query: 170 ISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228 + E ++L +I + TLR+ QGKG K R L P + + + ++ + + Sbjct: 140 VGEVVALKVSDIDSQRMTLRVEQGKGRKDRYAMLSPVLLERLRCWWRVARAQGKMLDGGW 199 Query: 229 LFRGIRGKPLNP----GVFQ--RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282 LF G LNP G Q R I + + + HTLRHSFATHLL D+R Sbjct: 200 LFPG-----LNPIESLGTRQLNRAIHEAALVARIDKRVSMHTLRHSFATHLLEQKVDIRV 254 Query: 283 IQSILGHFRLSTTQIYTNVNS 303 IQ +LGH RL TT Y V + Sbjct: 255 IQVLLGHNRLDTTAQYVQVAT 275 >gi|10956538|ref|NP_043131.1| integrase/recombinase [Lactobacillus delbrueckii] gi|971481|emb|CAA90742.1| integrase/recombinase [Lactobacillus delbrueckii] Length = 333 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 87/328 (26%), Positives = 146/328 (44%), Gaps = 35/328 (10%) Query: 6 LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65 LP+I +L+ Q + ++ S+ T+++Y + F +LA + I+Q Sbjct: 23 LPKISMIDLILNEQV-MSAFIVDLNKSQSTIKTYTRCLKSFAQWLA--------MNGIQQ 73 Query: 66 LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSN 123 S + I+ ++ Q ++ + +K + K+L+ ++I + N+ N+R K S Sbjct: 74 TSESTIKLYMQWLENQGRQPSTIHLYIVVVKRWFKWLEAKRIYPDVAKNVENVRVRKDS- 132 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM- 182 P++ + + + + + TS + K RN A+L LL+ CGLR EA NI Sbjct: 133 --PKSFFQAHQVKKILDTVDQTSEKGK----RNYALLVLLFTCGLRTIEASRARVDNIRL 186 Query: 183 -DDQSTLRIQGKGDKIR--IVPLLPSVRKAILEYYD---LCPFDLNLNIQLPLFRGI--- 233 Q L I GKG K VPL + EY + P D Q PLF Sbjct: 187 NGSQLVLYIHGKGHKTDDDYVPLPDKTYAVLCEYLSTRGIKPKDFETCKQ-PLFTSTSNR 245 Query: 234 -RGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291 + + ++ + + R G TAH+ RH+ AT L+NG DLR Q +L H Sbjct: 246 SKDQSISTNAISKICKSCFRKAGYDQHDWTAHSTRHTAATLALTNGADLRETQMLLRHSS 305 Query: 292 LSTTQIYTN----VNSKNGGDWMMEIYD 315 +TT+IY + + ++ G D I+D Sbjct: 306 PTTTEIYLHQLGKLENQAGKDVANAIFD 333 >gi|255100620|ref|ZP_05329597.1| integrase/recombinase [Clostridium difficile QCD-63q42] Length = 346 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 70/258 (27%), Positives = 121/258 (46%), Gaps = 15/258 (5%) Query: 57 KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116 +IT + I + + +E ++ R I R+ + L I++F KY + IT S++ + Sbjct: 54 EITFEMIDRNAVSEFLDYLETERNCSISTRNHR--LHCIRAFYKYAAQEDITVISHLEEI 111 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 + +KK+ P + E + V+ +L T+ R++ +L LY G R+ E + + Sbjct: 112 QKVKKAKE-PETIVEHMSEDAVNAILKQPDTFTEK-GKRDAFLLLFLYKTGARVQELVDI 169 Query: 177 TPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235 +I + + I GKG K R +PL V + + +Y L + +L + LF R Sbjct: 170 RLCDIQLGRHPKVTIHGKGAKTRSIPLRDDVVQHLKQYLALFHPEEHLFSEQHLFYVTRS 229 Query: 236 KPLNPGVFQRYIRQLRRYLG---------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286 + + + + +RQL R G +P + H RHS+A L NG DL I Sbjct: 230 R-MKKRMTEDNVRQLVRKYGKQAREICKEVPENVHPHLFRHSWAMILYQNGVDLTLISQW 288 Query: 287 LGHFRLSTTQIYTNVNSK 304 LGH L TT IY + +++ Sbjct: 289 LGHSNLETTLIYAHADTE 306 >gi|310766557|gb|ADP11507.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 345 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 82/317 (25%), Positives = 144/317 (45%), Gaps = 40/317 (12%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKI--TIQTIRQLSYTEIRAFISKRRT--QKI 83 ER S+ TL+ T F+ + +E I + R + + R R+ + + Sbjct: 44 ERNWSETTLK---VQTHHGYRFICWASERGIHHAAEVTRPVLESWQRHLWQYRKANGEPL 100 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLVDNVL 142 R+ + +L ++ + ++L K+ + + ++ ++ LPR L+ +Q +V+ Sbjct: 101 SPRTQRTALQPLQVWFRWLAKQNLILANPAADLELPRQEKHLPRTILSVEQVEGIVNLCD 160 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVP 201 L+T R+ A+L LL+ G+R E L + + L I QGKG + R++P Sbjct: 161 LNTLQ-----GMRDRALLELLWSTGIRRGEVARLETYSADFSRKILTIVQGKGKQDRVIP 215 Query: 202 L-----------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 + L VR +L D L ++ G+ G N G+ + L Sbjct: 216 VGERALWWLRHYLHKVRPEVLVSPDCKALFLAMD-------GVAGLTAN-GITHAVVPYL 267 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 R G+ + H RH+ AT +L NG DLR IQ++LGH + +TQIYT V+ + + Sbjct: 268 R-AAGIE-KGSCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIRA----L 321 Query: 311 MEIYDQTHPS-ITQKDK 326 ++ THP+ T+ DK Sbjct: 322 QAVHASTHPAEQTEPDK 338 >gi|118592686|ref|ZP_01550076.1| Integrase [Stappia aggregata IAM 12614] gi|118593369|ref|ZP_01550753.1| Integrase [Stappia aggregata IAM 12614] gi|118593930|ref|ZP_01551286.1| Integrase [Stappia aggregata IAM 12614] gi|118433470|gb|EAV40141.1| Integrase [Stappia aggregata IAM 12614] gi|118434047|gb|EAV40704.1| Integrase [Stappia aggregata IAM 12614] gi|118434737|gb|EAV41388.1| Integrase [Stappia aggregata IAM 12614] Length = 287 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/144 (40%), Positives = 75/144 (52%), Gaps = 10/144 (6%) Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLC-PFDL 221 Y GLR+SE + L +I + +RI+ GKG K R V L + + Y+ L P D Sbjct: 131 YAAGLRVSEVVGLKVADIDSQRGVIRIRHGKGGKDRYVMLSAQLLHILRTYWRLARPPDW 190 Query: 222 NLNIQLPLFRGIRGK-PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280 LF G P++ V R R G+ T HTLRHSFATHLL NG D+ Sbjct: 191 -------LFPRRNGSGPISITVLHAACRSARAAAGIDKRVTVHTLRHSFATHLLENGTDI 243 Query: 281 RSIQSILGHFRLSTTQIYTNVNSK 304 R IQ +LGH LS+T YT V+S+ Sbjct: 244 RIIQVLLGHNNLSSTARYTKVSSR 267 >gi|118474094|ref|YP_892018.1| phage integrase family site specific recombinase [Campylobacter fetus subsp. fetus 82-40] gi|118413320|gb|ABK81740.1| site-specific recombinase, phage integrase family [Campylobacter fetus subsp. fetus 82-40] Length = 354 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 12/187 (6%) Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 K LP +NE++ ++ + + K RN I+ + G+R+SEAL+L ++ Sbjct: 160 KGQKLPEFMNEEEVKRFLNAI---DETDFKMNSNRNKLIIKTIVFTGIRVSEALNLKRKD 216 Query: 181 IMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGKP 237 I +D LRI+GKG+K RIV ++K +++ + L +N +N + LF G+ Sbjct: 217 ISEDGDLYILRIRGKGNKYRIVM----IKKHLIDEH-LQNIVINYINSEGYLFVNRNGEK 271 Query: 238 LNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 L R + Q+ G+ AH LRH+FAT L DL +Q LGH L+T++ Sbjct: 272 LTQAYVSRIVEQILFGAGIRKEKNGAHMLRHTFATMLYKKQKDLVLVQEALGHASLNTSR 331 Query: 297 IYTNVNS 303 IYT+ +S Sbjct: 332 IYTHFDS 338 >gi|241992549|gb|ACS73618.1| IntI1 [uncultured bacterium] Length = 330 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/177 (32%), Positives = 88/177 (49%), Gaps = 37/177 (20%) Query: 162 LLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIV----PLLPSVRKAILEYYDL 216 LLYG GLRI+EAL L +++ ++ + +GKG K R+V L+P++R+ + + Sbjct: 154 LLYGTGLRITEALQLRVKDLDFGHRAVIVREGKGAKDRVVMLPQSLMPALREQLGRVRAV 213 Query: 217 CPFDLNLN---IQLP------------------LFRG-----------IRGKPLNPGVFQ 244 D+ +++P +F IR L FQ Sbjct: 214 WAADVEAGTAGVEMPHALDRKYPRMGASWAWFWVFPQDHHSTDPRSGVIRRHHLYDQTFQ 273 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 R ++ G+ T HTLRHSFATHLL +G D+R++Q +LGH ++TT IYT+V Sbjct: 274 RAFKRAVVAAGIEKPATPHTLRHSFATHLLQSGSDIRTVQELLGHADVATTMIYTHV 330 >gi|148261334|ref|YP_001235461.1| phage integrase family protein [Acidiphilium cryptum JF-5] gi|326403318|ref|YP_004283399.1| putative transposase for insertion sequence element [Acidiphilium multivorum AIU301] gi|326404178|ref|YP_004284260.1| putative transposase for insertion sequence element [Acidiphilium multivorum AIU301] gi|146403015|gb|ABQ31542.1| phage integrase family protein [Acidiphilium cryptum JF-5] gi|325050179|dbj|BAJ80517.1| putative transposase for insertion sequence element [Acidiphilium multivorum AIU301] gi|325051040|dbj|BAJ81378.1| putative transposase for insertion sequence element [Acidiphilium multivorum AIU301] Length = 301 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 83/295 (28%), Positives = 126/295 (42%), Gaps = 36/295 (12%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 RQ L+++ + RGL T + Y + F FL + + +IR F Sbjct: 14 RQRMLEDMAM-RGLRSATQRDYIRFVQSFAAFLRRPPDTA---------TAEDIRRFQVH 63 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 + + ++ S+S ++ F R + +L + LP L+ Sbjct: 64 QHESGVQPPTINCSVSALRFFFTVTLDRPDLSRRLVLA----RSPRKLPDVLS------- 112 Query: 138 VDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKG 194 VD V LL + K+ AIL YG GLR+SE SL +I + +R+ QGKG Sbjct: 113 VDEVGRLLEAAPGIKY-----KAILGTAYGAGLRVSEVASLKVDDIDSTRMLIRVEQGKG 167 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRG-IRGKPLNPGVFQRYIRQL 250 K R L P + + ++ + LP LF G P++ R + + Sbjct: 168 RKDRNAMLSPQLLALLRLWWTEGK---RRGVMLPHGWLFPGRSAADPVSTRQINRAVHEA 224 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 G+ + HTLRHSFATHLL D+R IQ +LGH +L TT +Y V +K Sbjct: 225 AEAAGIRKRVSPHTLRHSFATHLLEQDVDIRVIQVLLGHSKLDTTALYARVATKT 279 >gi|291522918|emb|CBK81211.1| Site-specific recombinase XerD [Coprococcus catus GD/7] Length = 282 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 69/286 (24%), Positives = 133/286 (46%), Gaps = 32/286 (11%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 ++N +R L + T+Q Y D FL ++ + + L+ + +F++ +R + Sbjct: 9 IRNEAEKRNLRERTIQLYCSDVSYFLRWIG---------KNVSDLTLEDAESFLTAKRLE 59 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 RS + + +S +K+L K+ + T + + +K+ +LP L+ + ++D Sbjct: 60 G---RS-PETHNHYRSAIKFLYKKVLKTVWDDDTVPAMKRERNLPAVLSRDEINAIIDAT 115 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV 200 + ++ AI+ +Y GLR+SE + L +I T+ + + KG R Sbjct: 116 ----------PNLKHKAIIATMYSSGLRVSEVVHLHYDDISRTNMTIHVRETKGRIDRYT 165 Query: 201 PLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 L + EY+ C P D I P G L+ ++ ++ + G+ Sbjct: 166 ILSQKNLDLLTEYWYKCGRPKD----ILFP--SSWSGGYLDIASVNQFFKKSAKLAGINR 219 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 ++H RHSFA+HL +G D++ IQS+LGH +T +Y +V++K Sbjct: 220 HVSSHACRHSFASHLFESGTDIKYIQSLLGHVDPRSTDVYLHVSNK 265 >gi|217968717|ref|YP_002353951.1| integrase [Thauera sp. MZ1T] gi|217506044|gb|ACK53055.1| integrase family protein [Thauera sp. MZ1T] Length = 291 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 67/219 (30%), Positives = 105/219 (47%), Gaps = 16/219 (7%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 SL ++SG+K F +R + M+ ++ LP L+ ++ L+ + Sbjct: 71 SLNAAISGLKFFFDITLQRG----ELMARMQPVRLPQRLPVVLSREEVARLI-AACNNLK 125 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS 205 H+T L L Y GLR SE +SL ++ + TLR+ QGKG K R L P Sbjct: 126 HQTA---------LSLAYATGLRASEVVSLKVSDVDSGRMTLRVEQGKGRKDRYAMLSPL 176 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 + + + ++ + + LF G+ + L+P R ++ G+ + HT Sbjct: 177 LLERLRVWWRVARAQGKMLDGGWLFPGLNPIESLSPRQLNRAVQAAALAAGIDKRVSMHT 236 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 LRH FATHLL D+R IQ++LGH +L TT IYT V + Sbjct: 237 LRHCFATHLLEQKVDIRIIQALLGHKKLDTTVIYTQVAT 275 >gi|253577473|ref|ZP_04854788.1| integrase [Paenibacillus sp. oral taxon 786 str. D14] gi|251843173|gb|EES71206.1| integrase [Paenibacillus sp. oral taxon 786 str. D14] Length = 326 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 105/226 (46%), Gaps = 19/226 (8%) Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 R++ +L +K F K+L + I + +R LK SL + L Sbjct: 85 RTINCNLCILKEFFKFLYEDGIAEANIAAELRPLKVKTSLTHTFTDGHL-----QRLFVQ 139 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLP 204 + + RN I+ +L G+R+ E +L N+ D+ TLRI QGKG K R+VP+ Sbjct: 140 PDRSTFTGYRNYVIMLVLLETGIRLKELANLRVTNVFLDEGTLRIIQGKGRKARMVPIQH 199 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR-QLRRYLGLP----LS 259 + +Y F+ L+ + P ++ IR + RY + Sbjct: 200 VAAFELKQYM----FERGTLETDRLWVTLDNHPF----YEAGIRVMISRYCIAANIQGVQ 251 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + HT RH+FA L NGGD+ +++SILGH R+ TT++Y + S++ Sbjct: 252 CSCHTFRHTFAKKYLMNGGDVFTLKSILGHERIETTEMYVELFSRD 297 >gi|330826233|ref|YP_004389536.1| integron integrase [Alicycliphilus denitrificans K601] gi|329311605|gb|AEB86020.1| integron integrase [Alicycliphilus denitrificans K601] Length = 332 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 84/310 (27%), Positives = 139/310 (44%), Gaps = 60/310 (19%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLS 93 T Q+Y R+F++F + R+L ++ AF++ ++ + + ++ + Sbjct: 35 TEQAYVDWARRFILFHG--------KRHPRELGAPDVTAFLTHLAVERNVSASTQNQAKA 86 Query: 94 GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153 I K + ++ + +++ R K LP L +++ V +LLH T+W+ Sbjct: 87 AILFLYKEVLQQDLPWLDEVVSAR---KPRRLPVVLTQRE----VRELLLHLQ-GTQWL- 137 Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--------IVPLLP 204 + LLYG G+RI EAL L +++ ++ L + +GKG+K R I PL Sbjct: 138 -----VSSLLYGTGMRILEALRLRVKDVEFERRELIVREGKGNKDRVTVLPENLIAPLRE 192 Query: 205 SVRKA-ILEYYDL--------CPFDLNLNI---------QLPLFRGIRGKPLNPGV---- 242 + +A +L DL P L + Q +R GV Sbjct: 193 QMERARMLHRKDLDAGLGAVWLPDALAVKYANAATAWGWQYVFPSAVRSVDPRSGVERRH 252 Query: 243 ------FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 Q+ + R G+ T H LRHSFATHLL G D+R++Q +LGH +STT Sbjct: 253 HMLEQSVQKAVALAARRAGIDKPCTPHVLRHSFATHLLQAGYDIRTVQELLGHKDVSTTM 312 Query: 297 IYTNVNSKNG 306 IYT+V +K G Sbjct: 313 IYTHVLNKGG 322 >gi|46198918|ref|YP_004585.1| DNA integration/recombination/invertion protein [Thermus thermophilus HB27] gi|46196542|gb|AAS80958.1| DNA integration/recombination/invertion protein [Thermus thermophilus HB27] Length = 313 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 79/297 (26%), Positives = 137/297 (46%), Gaps = 46/297 (15%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 + + L +ERG S ++ Y D + F E + S +RA + + Sbjct: 34 YAEYLLLERGYSPRGVRRYLQD---LAFWFRFLEAEGLPP------SPEAVRALLLR--- 81 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL-NMRNLKKSNSLPRALNEKQALTLVD 139 ++ R ++ L+ ++S+ +YL++ K S+ + K LP ++ ++ Sbjct: 82 ERWAPRRVQGFLAALRSYYRYLREVKGEAASDPTEGIGRPKAGRRLPLHPGPEELKRFLE 141 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGKGDK 196 E ++A + LYG GLRISEALSL +N++ + + +R+ GKG+K Sbjct: 142 A--FREEKEAALLEA----LARFLYGTGLRISEALSLKGRNVVLEGGSPVAVRVVGKGNK 195 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNI----------QLPLFRGIRGKPLNPGVFQRY 246 R+VPL + R+ +LE L N+NI +P R + K Sbjct: 196 ERLVPLSKTARE-VLE--ALGRLQGNVNIFTFSQGRRKGHVPSARWVEAK---------- 242 Query: 247 IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 R+ GL P T H LRH++AT L+ G +L +++ +LGH ++TTQIY + + Sbjct: 243 FREAALRAGLDPRRFTPHKLRHAYATLLVERGVELDAVKDLLGHESIATTQIYLHAS 299 >gi|257485790|ref|ZP_05639831.1| Orf28 [Pseudomonas syringae pv. tabaci ATCC 11528] gi|302130312|ref|ZP_07256302.1| Orf28 [Pseudomonas syringae pv. tomato NCPPB 1108] gi|331012886|gb|EGH92942.1| Orf28 [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 319 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 78/295 (26%), Positives = 128/295 (43%), Gaps = 41/295 (13%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W NL+ R T ++Y+ D F F+ + + RQ++ + + A+ + Sbjct: 32 WFANLDNPR-----TRRAYQNDLTDFSSFIGLASADDF-----RQVTRSHVLAWRADLEH 81 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVD 139 + + +++R L+ + S +L E+N + N PR NE + L D Sbjct: 82 RGLAGATIRRKLAALASLFDHL------LENNAVAGGNPVHGVKRPRIETNEGKTPALGD 135 Query: 140 NV---LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194 + LL R+ AIL +L GLR EA L ++ + + LR+ GKG Sbjct: 136 HQAKQLLEAPDTETLKGLRDRAILAVLLYHGLRREEAAQLHTHDLQERRGIKHLRVHGKG 195 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG--------VFQRY 246 KIR +PL P + I Y L + PLFR +RG G V + Y Sbjct: 196 SKIRFLPLHPVAAERIHAY--LEQDNERAATPGPLFRSLRGTTTGAGITANGIYTVVEAY 253 Query: 247 IRQ---LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 ++ + +LG+ H LR + AT+ L + D+ +Q LGH +STT++Y Sbjct: 254 AKKAGIVVEHLGV------HGLRATAATNALEHDADIAKVQMWLGHANISTTRLY 302 >gi|223972389|dbj|BAH23420.1| site-specific tyrosine recombinase [Vibrio cholerae O1 biovar El tor] Length = 361 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 68/248 (27%), Positives = 120/248 (48%), Gaps = 51/248 (20%) Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150 +L I K++ +R++T + + R K+ +P L+ +A+++++ Sbjct: 114 ALCAIVFMYKHILQRELTLLPDTIKARAPKR---VPSVLSHNEAMSIINQ---------- 160 Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKG--DKIRIVP--LLPS 205 + + LLYGCGLR +E L L ++I + ++ +GKG D+++++P L+ Sbjct: 161 -LSGSYKLMFSLLYGCGLRKAELLMLRVKDIDFESRNVYVFRGKGGKDRVKMLPEKLVEP 219 Query: 206 VRKAI-----LEYYDLC----------------PFDL-NLNIQLPLFRGIRGK-PLNPGV 242 ++ I L DLC P+ + + Q +R K P++ V Sbjct: 220 LKLHIEKVRDLHEKDLCEGEGKTSLPSGLARKYPYAISDFKWQFIFPSSVRCKHPVDGYV 279 Query: 243 FQRYI------RQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 + ++ ++LR + G+ TAH RHSFAT LL G D+R++Q +LGH L Sbjct: 280 CRHHLHWTSLTKKLRSAVIRSGVQKHVTAHIFRHSFATQLLKAGTDIRTVQELLGHSDLK 339 Query: 294 TTQIYTNV 301 TTQIYT+V Sbjct: 340 TTQIYTHV 347 >gi|323936701|gb|EGB32986.1| phage integrase [Escherichia coli E1520] Length = 337 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 81/305 (26%), Positives = 129/305 (42%), Gaps = 44/305 (14%) Query: 8 EIVSFELL----KERQNWLQNLEIERGLSKLTL------QSYECDTRQFLIFLAFYTEEK 57 E V+FE + WL +R LS+LT +E R L + +T K Sbjct: 34 EAVAFEKYTLYNHHNKEWLSKPTDKRRLSELTQIWWDLKGKHEEHGRSNLGKIEIFT--K 91 Query: 58 ITIQTIR-QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILN 115 IT Q++ + I + + RR+Q I S+ R L+ I F ++ E I Sbjct: 92 ITNDPCAFQITKSLISQYCATRRSQGIKPSSINRDLTCISGMFTALIEAELFFGEHPIRG 151 Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175 + LK+ L +++ L+ +D N I L G R EA Sbjct: 152 TKRLKEEKPDTGYLTQEEIALLLAA-----------LDGDNKKIAILCLSTGARWGEAAR 200 Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235 L +NI+ ++ T ++ K +K R VP+ +V K I + RG Sbjct: 201 LKAENIIHNRVTF-VKTKTNKPRTVPISEAVAKMIADNK----------------RGFLF 243 Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 + F+R ++ ++ LP+ H LRHSFATH + NGG + ++Q ILGH R+ T Sbjct: 244 PDADYPRFRRTMKAIKP--DLPMGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQT 301 Query: 296 QIYTN 300 +Y + Sbjct: 302 MVYAH 306 >gi|84468558|dbj|BAE71364.1| hypothetical protein [Vibrio cholerae O139] gi|84468563|dbj|BAE71368.1| hypothetical protein [Vibrio cholerae O139] gi|84468567|dbj|BAE71371.1| hypothetical protein [Vibrio cholerae O139] Length = 183 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 79/168 (47%), Gaps = 38/168 (22%) Query: 172 EALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSVRKAIL---EYYDL------- 216 E + L Q+I D +RI QGKG K R V L P +++ I YYD Sbjct: 2 ECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQKNY 61 Query: 217 ---------------CPFDLNLNIQLPLFR--------GIRGKPLNPGVFQRYIRQLRRY 253 P++ + P F+ +R +N V Q+ +R+ + Sbjct: 62 GGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQE 121 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G+ + T HTLRHSFATHLL G D+R++Q LGH + TTQIYT+V Sbjct: 122 AGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 169 >gi|9630357|ref|NP_046786.1| Int [Enterobacteria phage P2] gi|117624294|ref|YP_853207.1| putative phage integrase [Escherichia coli APEC O1] gi|168750144|ref|ZP_02775166.1| integrase [Escherichia coli O157:H7 str. EC4113] gi|168756346|ref|ZP_02781353.1| integrase [Escherichia coli O157:H7 str. EC4401] gi|168770061|ref|ZP_02795068.1| integrase [Escherichia coli O157:H7 str. EC4486] gi|168775961|ref|ZP_02800968.1| integrase [Escherichia coli O157:H7 str. EC4196] gi|168782415|ref|ZP_02807422.1| integrase [Escherichia coli O157:H7 str. EC4076] gi|168798987|ref|ZP_02823994.1| integrase [Escherichia coli O157:H7 str. EC508] gi|195937855|ref|ZP_03083237.1| putative phage integrase [Escherichia coli O157:H7 str. EC4024] gi|208807655|ref|ZP_03249992.1| integrase [Escherichia coli O157:H7 str. EC4206] gi|208813905|ref|ZP_03255234.1| integrase [Escherichia coli O157:H7 str. EC4045] gi|208818402|ref|ZP_03258722.1| integrase [Escherichia coli O157:H7 str. EC4042] gi|209400896|ref|YP_002271366.1| integrase [Escherichia coli O157:H7 str. EC4115] gi|254793910|ref|YP_003078747.1| integrase [Escherichia coli O157:H7 str. TW14359] gi|307314933|ref|ZP_07594523.1| integrase family protein [Escherichia coli W] gi|6136261|sp|P36932|VINT_BPP2 RecName: Full=Integrase gi|3139116|gb|AAD03297.1| Int [Enterobacteria phage P2] gi|115513418|gb|ABJ01493.1| putative phage integrase [Escherichia coli APEC O1] gi|187768624|gb|EDU32468.1| integrase [Escherichia coli O157:H7 str. EC4196] gi|188015634|gb|EDU53756.1| integrase [Escherichia coli O157:H7 str. EC4113] gi|189000073|gb|EDU69059.1| integrase [Escherichia coli O157:H7 str. EC4076] gi|189356536|gb|EDU74955.1| integrase [Escherichia coli O157:H7 str. EC4401] gi|189360964|gb|EDU79383.1| integrase [Escherichia coli O157:H7 str. EC4486] gi|189378536|gb|EDU96952.1| integrase [Escherichia coli O157:H7 str. EC508] gi|208727456|gb|EDZ77057.1| integrase [Escherichia coli O157:H7 str. EC4206] gi|208735182|gb|EDZ83869.1| integrase [Escherichia coli O157:H7 str. EC4045] gi|208738525|gb|EDZ86207.1| integrase [Escherichia coli O157:H7 str. EC4042] gi|209162296|gb|ACI39729.1| integrase [Escherichia coli O157:H7 str. EC4115] gi|254593310|gb|ACT72671.1| integrase [Escherichia coli O157:H7 str. TW14359] gi|306905639|gb|EFN36169.1| integrase family protein [Escherichia coli W] gi|315061400|gb|ADT75727.1| putative phage integrase [Escherichia coli W] gi|323378021|gb|ADX50289.1| integrase family protein [Escherichia coli KO11] gi|323951882|gb|EGB47756.1| phage integrase [Escherichia coli H252] gi|323961683|gb|EGB57287.1| phage integrase [Escherichia coli H489] Length = 337 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 66/237 (27%), Positives = 105/237 (44%), Gaps = 31/237 (13%) Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSN 123 Q++ + I + + RR+Q I S+ R L+ I F ++ E I + LK+ Sbjct: 100 QITKSLISQYCATRRSQGIKPSSINRDLTCISGMFTALIEAELFFGEHPIRGTKRLKEEK 159 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 E LT + LL + +D N I L G R EA L +NI+ Sbjct: 160 P------ETGYLTQEEIALLLAA-----LDGDNKKIAILCLSTGARWGEAARLKAENIIH 208 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 ++ T ++ K +K R VP+ +V K I + RG + F Sbjct: 209 NRVTF-VKTKTNKPRTVPISEAVAKMIADNK----------------RGFLFPDADYPRF 251 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 +R ++ ++ LP+ H LRHSFATH + NGG + ++Q ILGH R+ T +Y + Sbjct: 252 RRTMKAIKP--DLPMGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAH 306 >gi|168208010|ref|ZP_02634015.1| putative integrase/recombinase [Clostridium perfringens E str. JGS1987] gi|170660693|gb|EDT13376.1| putative integrase/recombinase [Clostridium perfringens E str. JGS1987] Length = 284 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 82/292 (28%), Positives = 135/292 (46%), Gaps = 42/292 (14%) Query: 24 NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE----IRAFISKRR 79 N+E GLS+ TL+ YE D F Y E K I+++ ++ E I +I+ + Sbjct: 10 NIESNNGLSEGTLKKYEIDLNLFF----EYMEHKQNIKSLNSVTGEEGQKIIDRYINYLK 65 Query: 80 TQKIGDRSLKRSLSGIKSFLKYL------KKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 + ++ + I FLKYL K K+ + I N+ + ++ L RA + Sbjct: 66 REGYKPSTINGKIVSINKFLKYLGHEFKAKAIKVQNKMYIENIISEREFERLIRACKD-- 123 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 + R+ I+ L GLRISE LSLT + + ++ I GK Sbjct: 124 -------------------NKRDYTIIMTLANTGLRISELLSLTIND--PKKESIYIYGK 162 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 G K R + L P ++K + +Y D + + + +L LF G RG L + + + ++ Sbjct: 163 GGKGRELILSPQLKKILNDYID--NYRMKTHKRL-LFTGERG-ALKRNAINKMLLKYQKK 218 Query: 254 LGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 G+ H+ RH +A +L+S G L IQ++LGH ++TT IYT + K Sbjct: 219 TGISKEKMHPHSFRHFYAKYLISKGIGLDIIQTLLGHENINTTSIYTKSSKK 270 >gi|116511440|ref|YP_808656.1| integrase-recombinase [Lactococcus lactis subsp. cremoris SK11] gi|116107094|gb|ABJ72234.1| Integrase [Lactococcus lactis subsp. cremoris SK11] Length = 311 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 76/291 (26%), Positives = 136/291 (46%), Gaps = 31/291 (10%) Query: 25 LEIERG-LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83 LE++ G SK T+++Y +F+ F ++ I I ++ Y + FIS+ + Sbjct: 12 LELKLGNYSKETMETYRQHIDKFIDFYKKEISNEMDIYAINKIHY---KLFISQLLDNSL 68 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN--- 140 + L K+F YL + ++ S + +++ LK++ KQALT ++ Sbjct: 69 RATYINAILKSNKAFYSYLIREQVLKTSPMDSIKLLKET---------KQALTTFNDDEV 119 Query: 141 -VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 +L+ + +++ARN I+ +L G+RISE +++ ++ D +R+ GKGDK R+ Sbjct: 120 KAMLNVWNFNTYLNARNKCIIAVLADTGIRISELINIKDSDLTD--QYIRVLGKGDKWRV 177 Query: 200 VPLLPSVRKAILEYYDLCPFDLNL---------NIQLPLFRGIRGKPLNPGV-FQRYIRQ 249 VP+ + + +Y L N + LF G G+ + + I Q Sbjct: 178 VPISNELNYLLTKYKRLRDNHFNKIRNRNGKVRELDSELFLGKTGRSIKTITNIEVMIAQ 237 Query: 250 --LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 L+ + + + H RH + L G D+ +I +LGH LSTTQIY Sbjct: 238 TGLQANVRASVRCSPHQFRHYWTCKSLELGQDIFTISKLLGHTNLSTTQIY 288 >gi|29028384|gb|AAO64735.1| integrase [Enterobacteria phage P2] Length = 337 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 66/237 (27%), Positives = 105/237 (44%), Gaps = 31/237 (13%) Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSN 123 Q++ + I + + RR+Q I S+ R L+ I F ++ E I + LK+ Sbjct: 100 QITKSLISQYCATRRSQGIKPSSINRDLTCISGMFTALIEAELFFGEHPIRGTKRLKEEK 159 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 E LT + LL + +D N I L G R EA L +NI+ Sbjct: 160 P------ETGYLTQEEIALLLAA-----LDGDNKKIAILCLSTGARWGEAARLKAENIIH 208 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 ++ T ++ K +K R VP+ +V K I + RG + F Sbjct: 209 NRVTF-VKTKTNKPRTVPISEAVAKMIADNK----------------RGFLFPDADYPRF 251 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 +R ++ ++ LP+ H LRHSFATH + NGG + ++Q ILGH R+ T +Y + Sbjct: 252 RRTMKAIKP--DLPMGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAH 306 >gi|16197749|gb|AAK95987.1| site-specific tyrosine recombinase [Vibrio cholerae O1 biovar El Tor] Length = 362 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 68/248 (27%), Positives = 120/248 (48%), Gaps = 51/248 (20%) Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150 +L I K++ +R++T + + R K+ +P L+ +A+++++ Sbjct: 115 ALCAIVFMYKHILQRELTLLPDTIKARAPKR---VPSVLSHNEAMSIINQ---------- 161 Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKG--DKIRIVP--LLPS 205 + + LLYGCGLR +E L L ++I + ++ +GKG D+++++P L+ Sbjct: 162 -LSGSYKLMFSLLYGCGLRKAELLMLRVKDIDFESRNVYVFRGKGGKDRVKMLPEKLVEP 220 Query: 206 VRKAI-----LEYYDLC----------------PFDL-NLNIQLPLFRGIRGK-PLNPGV 242 ++ I L DLC P+ + + Q +R K P++ V Sbjct: 221 LKLHIEKVRDLHEKDLCEGEGKTSLPSGLARKYPYAISDFKWQFIFPSSVRCKHPVDGYV 280 Query: 243 FQRYI------RQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 + ++ ++LR + G+ TAH RHSFAT LL G D+R++Q +LGH L Sbjct: 281 CRHHLHWTSLTKKLRSAVIRSGVQKHVTAHIFRHSFATQLLKAGTDIRTVQELLGHSDLK 340 Query: 294 TTQIYTNV 301 TTQIYT+V Sbjct: 341 TTQIYTHV 348 >gi|258651475|ref|YP_003200631.1| integrase [Nakamurella multipartita DSM 44233] gi|258652720|ref|YP_003201876.1| integrase [Nakamurella multipartita DSM 44233] gi|258653844|ref|YP_003203000.1| integrase [Nakamurella multipartita DSM 44233] gi|258554700|gb|ACV77642.1| integrase family protein [Nakamurella multipartita DSM 44233] gi|258555945|gb|ACV78887.1| integrase family protein [Nakamurella multipartita DSM 44233] gi|258557069|gb|ACV80011.1| integrase family protein [Nakamurella multipartita DSM 44233] Length = 334 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 68/269 (25%), Positives = 120/269 (44%), Gaps = 26/269 (9%) Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI---LNMRNLKK 121 +++ ++ FI ++R + G+ + R G KR++ T S + L +R L Sbjct: 58 EVTTADVLRFIERQRAARNGN--VVRLADGESGLALTTIKRRLATVSGLFEYLAIRGLVA 115 Query: 122 SNSLPRALNEKQALTLVDNV-----------LLHTSHETKWIDA----RNSAILYLLYGC 166 N +PR+L+ + V +L + I A R+ A+++L+ Sbjct: 116 RNPVPRSLSARPGRAPVRGAPLIRAPRRLPRILSPAEVNALISALRTARDRAMVWLMLLG 175 Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226 GLR E L L +++ + + + GKG R+VP+ + YY D + + Sbjct: 176 GLRRCEVLGLRHRDVQPGERRVFVTGKGGHERVVPVGKVFFAELAGYYATERPDTDTDQV 235 Query: 227 LPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285 + +G R G+PL+ + RR GL T H LRH+ T L +G L +IQ+ Sbjct: 236 FVVLKGQRRGQPLSAAGVDEVLSGARRRAGL-AHATCHELRHTCFTRLRESGMALEAIQA 294 Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 GH + TT+IY ++ DW+++ Y Sbjct: 295 QAGHVSIETTKIYLHLAP----DWLVDEY 319 >gi|91204063|emb|CAJ71716.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 433 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 84/190 (44%), Gaps = 39/190 (20%) Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRK 208 K + RN I+ L+YG GLR+ E L ++I D + + ++ GKGDK R +LP K Sbjct: 224 KQVKGRNLLIIQLIYGSGLRLMELARLRVKDIDFDSNMIFVRSGKGDKDRST-MLPEFVK 282 Query: 209 -----------------------------AILEYYDLCPFDLNLNIQLPLFR-------- 231 A+ Y P D P R Sbjct: 283 PELKLHLDKVKVLHNEDVEKGYGEVYLPNALDRKYPNAPKDWGWQYVFPSERLSVDLRSG 342 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291 IR L+ Q ++ + G+ + + HTLRHSFATHLL NG ++R +Q +LGH Sbjct: 343 KIRRHHLSDKAIQNMVKGAVKKAGIVKNASVHTLRHSFATHLLMNGVNIREVQDLLGHKN 402 Query: 292 LSTTQIYTNV 301 L TT IYT+V Sbjct: 403 LETTMIYTHV 412 >gi|167623565|ref|YP_001673859.1| integron integrase [Shewanella halifaxensis HAW-EB4] gi|167353587|gb|ABZ76200.1| integron integrase [Shewanella halifaxensis HAW-EB4] Length = 320 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 88/309 (28%), Positives = 134/309 (43%), Gaps = 58/309 (18%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 RG S T ++Y + F+ F ++K +T+ Q T+ +F++ R I + Sbjct: 19 RGYSIKTEKAYLYWIKAFINF-----QQKRHPETMGQAEVTQFLSFLANSRNVAINTQ-- 71 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 K +L+ L YL + + + L R K LP L+ ++ V VL Sbjct: 72 KVALNA----LVYLYHKHLKQDLGDLGFRYATKQRQLPIVLSTEE----VSEVLCQ---- 119 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR--------- 198 ++ R+ I+ LLYG GLR+SE L L Q+I + +L ++ GKG K R Sbjct: 120 ---LNGRDQLIVQLLYGSGLRVSECLRLRIQDIDLARCSLTVRNGKGHKDRQTILSQKCA 176 Query: 199 ---------------------IVPLLPSV--RK---AILEYYDLCPFDLNLNIQLPLFRG 232 I P LP+ RK A + + F P + Sbjct: 177 IKLPAYIDAARAIQIKDNTYCIGPSLPNALERKYPNAFRQAGWMFVFPSTTTSDNPYTKT 236 Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 L+ V ++ + R + T HT RHSFATHLL G D+R+IQ +LGH + Sbjct: 237 HCRHHLHQSVIRKALAAAVRKTHIIKRVTCHTFRHSFATHLLQAGRDIRTIQELLGHNDV 296 Query: 293 STTQIYTNV 301 +TTQIYT+V Sbjct: 297 NTTQIYTHV 305 >gi|323479888|gb|ADX79327.1| phage integrase family protein [Enterococcus faecalis 62] Length = 223 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/200 (28%), Positives = 100/200 (50%), Gaps = 12/200 (6%) Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE---KQALTLVDNVLLHTSH 147 S+S +K Y+ K + +++ LK+ + LN+ KQ LT+ H Sbjct: 14 SVSRLKKLFDYMLIEKYIDYNPFVDIERLKEQRKVIYPLNDYEIKQMLTVA------KKH 67 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207 K I RN IL L+ CGLRISE + ++IM++Q +R + K +K R V + P ++ Sbjct: 68 PYKHIAQRNVVILMLMIECGLRISEVCEIRDEDIMNNQIIIR-KSKNNKDRAVAVSPILK 126 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTL 265 K I++Y + L P GK LN + ++++++ + + + + HTL Sbjct: 127 KEIIKYQRIKKRKFGLLEGNPFIVSNLGKKLNEKSIWQIMQEIKKQIDIRDCVRFSGHTL 186 Query: 266 RHSFATHLLSNGGDLRSIQS 285 RH++A+ L NG D+ ++ S Sbjct: 187 RHTYASMQLRNGLDIYTLSS 206 >gi|15672627|ref|NP_266801.1| integrase-recombinase [Lactococcus lactis subsp. lactis Il1403] gi|12723549|gb|AAK04743.1|AE006297_6 integrase-recombinase [Lactococcus lactis subsp. lactis Il1403] Length = 312 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 77/291 (26%), Positives = 136/291 (46%), Gaps = 31/291 (10%) Query: 25 LEIERG-LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83 LE++ G SK T+ YE +F+ F +++ I I ++ Y + FIS+ + Sbjct: 13 LELKLGNYSKKTMAVYEQHIDKFIDFYKKEICKEMDIYAINKMHY---KLFISQLLDNSL 69 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN--- 140 + L K+F YL + ++ S + +++ LK++ KQALT ++ Sbjct: 70 RATYINAILKSNKAFYSYLIREQVLKTSPMDSIKLLKET---------KQALTTFNDDEV 120 Query: 141 -VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 +L+ + +++ARN I+ +L G+RISE +++ ++ D +R+ GKGDK R+ Sbjct: 121 KAMLNVWNFNTYLNARNKCIIAVLADTGIRISELINIKDSDLTD--QYIRVLGKGDKWRV 178 Query: 200 VPLLPSVRKAILEYYDLCPFDLNL---------NIQLPLFRGIRGKPLNPGV-FQRYIRQ 249 VP+ + + +Y L N + LF G G+ + + I Q Sbjct: 179 VPISNELNYLLTKYKRLRDNHFNKIRNRNGKVRELDSELFLGNTGRSIKTITNIEVMITQ 238 Query: 250 --LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 L+ + + + H RH + L G D+ +I +LGH LSTTQIY Sbjct: 239 TGLQANVRASVRCSPHQFRHYWTCKSLELGQDIFTISKLLGHTNLSTTQIY 289 >gi|254512553|ref|ZP_05124619.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11] gi|221532552|gb|EEE35547.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11] Length = 158 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/139 (38%), Positives = 74/139 (53%), Gaps = 8/139 (5%) Query: 168 LRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226 +R SE +LT +I D+ + + QGKG K R V L P + + +Y+ C + Sbjct: 1 MRASEVCNLTTGDIDSDRMLIHVVQGKGRKDRKVMLSPDLLDLLRDYW--C----EARPE 54 Query: 227 LPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285 LF G + P++P R +R G+ T HTLRHSFATHLL G D+R IQ Sbjct: 55 GWLFPGKPKINPISPRQLNRAFTSAKRMAGINKPATLHTLRHSFATHLLEAGTDVRVIQV 114 Query: 286 ILGHFRLSTTQIYTNVNSK 304 +LGH +L+ T YT V +K Sbjct: 115 LLGHAKLTITAQYTKVATK 133 >gi|68637890|emb|CAI36095.1| XerD-like site-specific recombinase [Pseudomonas syringae pv. phaseolicola] Length = 319 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 78/301 (25%), Positives = 128/301 (42%), Gaps = 53/301 (17%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W NL+ R T ++Y+ D F F+ + + RQ++ + + A+ + Sbjct: 32 WFANLDNPR-----TRRAYQNDLTDFSSFIGLASADDF-----RQVTRSHVLAWRADLEH 81 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVD 139 + + +++R L+ + S +L E+N + N PR NE + L D Sbjct: 82 RGLAGATIRRKLAALASLFDHL------LENNAVAGGNPVHGVKRPRIETNEGKTPALGD 135 Query: 140 NV---LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194 + LL R+ AIL +L GLR EA L ++ + + LR+ GKG Sbjct: 136 HQAKQLLEAPDTETLKGLRDRAILAVLLYHGLRREEAAQLKTGDLQERRGIKHLRVHGKG 195 Query: 195 DKIRIVPLLPSVRKAILEYY------DLCPFDLNLNIQLPLFRGIRGKPLNPG------- 241 K+R +PL P + I Y D P PLFR +RG G Sbjct: 196 SKVRFLPLHPVAAERIYAYLEQDVERDTAPG--------PLFRSLRGTTTGAGITANGIY 247 Query: 242 -VFQRYIRQ---LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 V + Y ++ + +LG+ H LR + AT+ L + D+ +Q LGH +STT++ Sbjct: 248 TVVEAYAKKAGIVVEHLGV------HGLRATAATNALEHDADIAKVQMWLGHANISTTRL 301 Query: 298 Y 298 Y Sbjct: 302 Y 302 >gi|319942072|ref|ZP_08016391.1| hypothetical protein HMPREF9464_01610 [Sutterella wadsworthensis 3_1_45B] gi|319804456|gb|EFW01334.1| hypothetical protein HMPREF9464_01610 [Sutterella wadsworthensis 3_1_45B] Length = 331 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 104/211 (49%), Gaps = 8/211 (3%) Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLK-KSNSLPRALNEKQALTLVDNVLLHTSHET 149 +L G+ L++ +TT + I ++ L+ RAL ++ L+ V +T Sbjct: 109 ALRGVAETAWRLRQIDLTTYAEIKAVKQLRVHREPTGRALQADESQKLLAAV----DEDT 164 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 R+ A++ LL GCGLR +E +L +N+ TLR+ GKG+K R V L P V + Sbjct: 165 GPKAVRDRALIALLLGCGLRRAEVTTLRMENLERSSGTLRVIGKGNKERKVFLTPEVAQK 224 Query: 210 ILEYYDLCPFDLN--LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 + + DL + + + I PL+P R ++ + + TT H LR Sbjct: 225 VNAWLDLRGTEPGWLFGRLTKVGQLILTNPLDPASIGRVVKHAQDLAKIAPITT-HDLRR 283 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 +FAT LL+ D+ ++++++GH +STT Y Sbjct: 284 TFATRLLAKNVDIVAVKNLMGHANVSTTAKY 314 >gi|294053866|ref|YP_003547524.1| integron integrase [Coraliomargarita akajimensis DSM 45221] gi|293613199|gb|ADE53354.1| integron integrase [Coraliomargarita akajimensis DSM 45221] Length = 448 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 61/183 (33%), Positives = 87/183 (47%), Gaps = 40/183 (21%) Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPL----LPSVRK--AILEYY-- 214 Y GLR+SE + L Q++ + + I+ GKG+K RIVPL P +R ++E + Sbjct: 255 YASGLRVSELVRLRIQDLDFSRGQIVIRSGKGNKDRIVPLSEKAAPGLRTHLELVETFFR 314 Query: 215 -DLCPFDLNLNIQLP---------LFRGIRGKPLNPG--------------------VFQ 244 D DL + LP R R + + P +Q Sbjct: 315 EDQERTDLA-GVYLPEALARRHSNAGRDWRWQWVWPSRKVSVDPRSGKLRRHHVLDRAYQ 373 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 R IR+ G+ T+H LRHSFATH+L NG D+R++Q +LGH R+ TTQ Y +V K Sbjct: 374 RTIREAALAAGITKRVTSHALRHSFATHMLENGTDIRTVQDLLGHRRIETTQTYLHVMQK 433 Query: 305 NGG 307 G Sbjct: 434 LGA 436 >gi|242237763|ref|YP_002985944.1| site-specific tyrosine recombinase XerC [Dickeya dadantii Ech703] gi|242239427|ref|YP_002987608.1| site-specific tyrosine recombinase XerC [Dickeya dadantii Ech703] gi|242129820|gb|ACS84122.1| integrase family protein [Dickeya dadantii Ech703] gi|242131484|gb|ACS85786.1| integrase family protein [Dickeya dadantii Ech703] Length = 366 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 7/169 (4%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213 R+ A++ LL+ G+R E L ++ + + I QGKG K R++P+ + + Y Sbjct: 168 RDRALMELLWSTGIRRGEVAVLEVYSVDASRHIVTIVQGKGKKDRVIPVGQRALRWLTYY 227 Query: 214 YDLCPFDLNLNIQLP-LFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 L +N P LF + G + L P + + G+ + H RH+ AT Sbjct: 228 VQAVRPQLLVNPHCPALFVALDGVEGLTPNGITNLVSHYIKASGIAKWGSCHLFRHAMAT 287 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 +L NG DLR IQ++LGH + +TQIYT V+ + + ++ THP+ Sbjct: 288 QMLENGADLRWIQAMLGHASVESTQIYTQVSIRA----LQAVHASTHPA 332 >gi|283479882|emb|CAY75798.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163] Length = 351 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 84/319 (26%), Positives = 139/319 (43%), Gaps = 25/319 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++WL +L + G S T+Q Y R FL + E I Q+S + A+ Sbjct: 26 ESWLAHLVVA-GRSPRTVQGYRERVRAFLXWC-----EPRGITYAPQVSLAVLEAYQRWL 79 Query: 79 RTQKIGD------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNE 131 + + D S L+ I+ ++L +R + + + K+ LP + +E Sbjct: 80 QGYRRADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPAQVFSE 139 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 + ++ ++ T RN AIL LL+ G+R SE L ++ + + ++ Sbjct: 140 AETRRVLQSLDAGTP-----PGLRNRAILELLWSSGIRRSELAGLLLSDVDFTRGVVNVR 194 Query: 192 -GKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-R 248 GKG K +VP+ + + Y D+ P LF +G L G R Sbjct: 195 RGKGGKDXVVPVGHAALMWLGRYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGR 254 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 +R L + H RH AT +L NG D R IQ+ILGH +L TTQIYT V + Sbjct: 255 AIREGAHLKKAGACHIFRHXMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGH--- 311 Query: 309 WMMEIYDQTHPSITQKDKK 327 + +++ THP+ ++ +K Sbjct: 312 -LQKVHAHTHPAEKRRTEK 329 >gi|291534339|emb|CBL07451.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1] Length = 317 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 69/286 (24%), Positives = 133/286 (46%), Gaps = 32/286 (11%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 ++N +R L + T+Q Y D FL ++ + + L+ + +F++ +R + Sbjct: 9 IRNEAEKRNLRERTIQLYCSDVSYFLRWIG---------KNVSDLTLEDAESFLTAKRLE 59 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 RS + + +S +K+L K+ + T + + +K+ +LP L+ + ++D Sbjct: 60 ---GRS-PETHNHYRSAIKFLYKKVLKTVWDDDTVPAMKRERNLPAVLSRDEINAIIDAT 115 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV 200 + ++ AI+ +Y GLR+SE + L +I T+ + + KG R Sbjct: 116 P----------NLKHKAIIATMYSSGLRVSEVVHLHYDDISRTNMTIHVRETKGRIDRYT 165 Query: 201 PLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 L + EY+ C P D I P G L+ ++ ++ + G+ Sbjct: 166 ILSQKNLDLLTEYWYKCGRPKD----ILFP--SSWSGGYLDIASVNQFFKKSAKLAGINR 219 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 ++H RHSFA+HL +G D++ IQS+LGH +T +Y +V++K Sbjct: 220 HVSSHACRHSFASHLFESGTDIKYIQSLLGHVDPRSTDVYLHVSNK 265 >gi|209809323|ref|YP_002264861.1| site-specific recombinase IntIA [Aliivibrio salmonicida LFI1238] gi|208010885|emb|CAQ81288.1| site-specific recombinase IntIA [Aliivibrio salmonicida LFI1238] Length = 327 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 84/310 (27%), Positives = 132/310 (42%), Gaps = 59/310 (19%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 RGL+ T + Y F+ F + ++E+I I SY E Q + + Sbjct: 25 RGLAYNTEKHYIYWISSFIRFKNYTSKEEIEAFDIP--SYLEHLVI-----KQNVSPNTQ 77 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 K +L+ L +L + + + L+ + KK+ LP K+A+ ++ N+ +H Sbjct: 78 KTALNA----LVFLCREFLQQSVDSLDFKRSKKATKLPTVFTHKEAMDVIHNL----NHP 129 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVR 207 K I L+YG GLRI+EAL L +I D+ + I+ GKG+K R L SV Sbjct: 130 IKLIAQ-------LMYGSGLRINEALRLRVNDIDLDKKIITIKSGKGNKDRTSILPESVV 182 Query: 208 KA-------ILEYYDLCPFDLNLNIQL-----------------------------PLFR 231 A + + + L + N + + P Sbjct: 183 DAIKTQLAFVKQQHKLDAINGNDEVYMSYALAEKYPTQAKSYGWQYVFPSPQISKDPRSE 242 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291 R L Q +++ +G+ + HT RHSFAT +L G DLR+IQ +LGH Sbjct: 243 KHRRHHLLDRTIQSAVKKSILKVGIDKKASCHTFRHSFATRVLERGADLRTIQELLGHSD 302 Query: 292 LSTTQIYTNV 301 + TTQIYT+V Sbjct: 303 IKTTQIYTHV 312 >gi|148244009|ref|YP_001220247.1| phage integrase family protein [Acidiphilium cryptum JF-5] gi|146400572|gb|ABQ29105.1| phage integrase family protein [Acidiphilium cryptum JF-5] Length = 330 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 85/317 (26%), Positives = 137/317 (43%), Gaps = 32/317 (10%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 M LP ++ ++ + L ++ S+ T+ Y DT + L+ A K + Sbjct: 1 MSAAALPALI-------QRFFTDRLCVQMEASRNTVAGYR-DTFRLLLRYASARHVKPPV 52 Query: 61 Q-TIRQLSYTEIRAFISKRRTQKIGD-RSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118 + TI + I F+ T + RS L+ I+SF +Y+ S+ + Sbjct: 53 KLTIEDIDADLIADFLVHTETARGNSARSRNTRLAAIRSFFRYVAM------SDPTWLLQ 106 Query: 119 LKKSNSLPRALNEKQALTLVDN----VLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174 ++ ++P K+ +T +D+ LL T W R+ A+L L GLR SE + Sbjct: 107 CQRILAMPNKRYVKRTVTFLDSDEIAALLAAPDRTTWAGRRDHALLLLAVQTGLRASELV 166 Query: 175 SLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233 L ++ ++ + +R GKG K R PL K + + + N PLF I Sbjct: 167 GLQCGDVVLESGAHIRCMGKGRKERATPLRRETVKLLAAW-----IGDDKNKSKPLFPSI 221 Query: 234 RGKPLNPGVFQRYIRQ--LRRYLGLPL----STTAHTLRHSFATHLLSNGGDLRSIQSIL 287 RG+ L+ + +R+ L L P T HTLRHS A LL +G D I L Sbjct: 222 RGERLSRDALEHLVRKHCLTASLTCPSIGSKRVTPHTLRHSTAMDLLHHGVDPAVIALWL 281 Query: 288 GHFRLSTTQIYTNVNSK 304 GH + TTQIY + + + Sbjct: 282 GHENVETTQIYIHADMR 298 >gi|126668746|ref|ZP_01739695.1| integrase/recombinase [Marinobacter sp. ELB17] gi|126669114|ref|ZP_01740043.1| integrase/recombinase [Marinobacter sp. ELB17] gi|126626410|gb|EAZ97078.1| integrase/recombinase [Marinobacter sp. ELB17] gi|126626783|gb|EAZ97431.1| integrase/recombinase [Marinobacter sp. ELB17] Length = 338 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 79/302 (26%), Positives = 132/302 (43%), Gaps = 37/302 (12%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK- 77 +++LQ L RG S T+++Y R I+LA + + + L + AF+++ Sbjct: 18 RDYLQRL---RGASAHTVRAYRDTLRLLFIYLADTKDSTVANLRLNDLHVDAVAAFLTQL 74 Query: 78 --RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN---ILNMRNLKKSNSLPRALNEK 132 R I R+ +R+ I+SF K+L + + IL + K +L L Sbjct: 75 ESDRANSIATRNCRRA--AIRSFCKHLIRVDLPHAEQYQRILALPAKKCQQNLATYLEAA 132 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQ 191 + ++D T + R+ +L LY G RISEAL++ ++ + +R+ Sbjct: 133 EVHAILDQPDCRTV-----LGQRDYGLLLFLYNTGARISEALTVCCADLHLTPPRQVRLH 187 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN----PGVFQRYI 247 GKG K R+ PL +A+L P + +F +G+PL + Q+Y+ Sbjct: 188 GKGKKDRLCPLWRDTAQALLRL----PTVRDGAPGAFVFVNRQGQPLTRDGAAYLLQKYV 243 Query: 248 RQLRRYLGLPLSTT-------AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 +P + T H LRHS A LL +G D+ I+ LGH ++TT Y Sbjct: 244 -----VAAIPTAPTLQRRKITPHVLRHSCAVALLQSGVDVTVIRDYLGHASIATTSRYLT 298 Query: 301 VN 302 N Sbjct: 299 TN 300 >gi|55980943|ref|YP_144240.1| integrase/recombinase [Thermus thermophilus HB8] gi|55772356|dbj|BAD70797.1| integrase/recombinase [Thermus thermophilus HB8] Length = 313 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 79/297 (26%), Positives = 138/297 (46%), Gaps = 46/297 (15%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 + + L +ERG S ++ Y D + F E ++ S +RA + + Sbjct: 34 YAEYLLLERGYSPRGVRRYLQD---LAFWFRFLEAEGLSP------SPEAVRALLLR--- 81 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL-NMRNLKKSNSLPRALNEKQALTLVD 139 ++ R ++ L+ ++S+ +YL++ K S+ + K LP ++ ++ Sbjct: 82 ERWAPRRVQGFLAALRSYYRYLREVKGEAASDPTEGIGRPKAGRRLPLHPGPEELKRFLE 141 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGKGDK 196 E ++A + LYG GLRISEALSL +N++ + + +R+ GKG+K Sbjct: 142 A--FREEKEAALLEA----LARFLYGTGLRISEALSLKGRNVVLEGGSPVAVRVVGKGNK 195 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNI----------QLPLFRGIRGKPLNPGVFQRY 246 R+VPL + R+ +LE L N+NI +P R + K Sbjct: 196 ERLVPLSKTARE-VLE--ALGRPQGNVNIFTFSQGRRKGHVPSARWVEAK---------- 242 Query: 247 IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 R+ GL P T H LRH++AT L+ G +L +++ +LGH ++TTQIY + + Sbjct: 243 FREAALRAGLDPRRFTPHKLRHAYATLLVERGVELDAVKDLLGHESIATTQIYLHAS 299 >gi|217961112|ref|YP_002339680.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus cereus AH187] gi|229140330|ref|ZP_04268885.1| hypothetical protein bcere0013_34290 [Bacillus cereus BDRD-ST26] gi|217063254|gb|ACJ77504.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus cereus AH187] gi|228642891|gb|EEK99167.1| hypothetical protein bcere0013_34290 [Bacillus cereus BDRD-ST26] Length = 304 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 70/275 (25%), Positives = 133/275 (48%), Gaps = 14/275 (5%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 + +G + T+++ + +Q FL +EK I + ++ ++ ++ + + + + Sbjct: 15 LAKGFTPKTMKNKRQEMKQLKRFL---MDEK-GISELEAINTLHLKQYVRTKYKEGLQPQ 70 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S+ +++F + +K + E NI L K +P+ L + + V ++ S Sbjct: 71 SIVSMFKLVRAFFSWCQKEEYLKE-NIAKKVELPK---VPKKLLKGFTIQEVSAMIDAFS 126 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 ++ +I+ARN AI+ +L CGLR E L QN+ ++T+ + GKG+K RI+ + P + Sbjct: 127 YKN-YIEARNKAIVAMLSDCGLRAMEIRGLLTQNV--KETTILVNGKGNKERIMFISPPL 183 Query: 207 RKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAH 263 +K ++ Y L L I F PL+ G++ +R + + H Sbjct: 184 KKILIRYERLRKQYLKDKIVKTDNYFLSYTADPLSHMGIYNVIKEAGKRVEVEEVRCSPH 243 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 T RH FA + NG D+ ++ +LGH +STTQ Y Sbjct: 244 TFRHFFAVQCILNGIDIFTLSKLLGHSDVSTTQRY 278 >gi|163736010|ref|ZP_02143436.1| tyrosine recombinase [Roseobacter litoralis Och 149] gi|161390735|gb|EDQ15078.1| tyrosine recombinase [Roseobacter litoralis Och 149] Length = 153 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 49/137 (35%), Positives = 77/137 (56%), Gaps = 3/137 (2%) Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF-DLNLNIQ 226 +RISE +L +++ D + +QGKG K RIV +P+ R+ ++ C + +I Sbjct: 1 MRISELTNLKVRDVSPDSGQILVQGKGSKERIV-FVPN-RELQEKFQRYCQARSDDGSIT 58 Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286 PLF G+ L F++ +R L + LG+ T H RHS AT L+ G D+R +Q++ Sbjct: 59 SPLFLNTEGRRLRSATFRKRLRTLSKRLGIEPHLTPHRFRHSAATLLIEEGIDIRIVQAL 118 Query: 287 LGHFRLSTTQIYTNVNS 303 LGH L TT+IY V++ Sbjct: 119 LGHANLKTTKIYVRVSN 135 >gi|54308887|ref|YP_129907.1| integrase-recombinase [Photobacterium profundum SS9] gi|46913317|emb|CAG20105.1| hypothetical integrase-recombinase [Photobacterium profundum SS9] Length = 180 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 88/165 (53%), Gaps = 21/165 (12%) Query: 159 ILYL-LYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYY 214 I +L LY GLR+ E LSLT +I DQ T+++ GKG K R+VP+ A+ ++ Sbjct: 13 IFFLTLYTMGLRLGEGLSLTVHDI--DQHTMQVHIRDGKGGKDRLVPVPQRTLNALRAHW 70 Query: 215 DLCPFDLNLNIQLP--LFRGIRG----KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 L + P +F G +G P++ G Q+ ++ + + G+ + H+LRH Sbjct: 71 --------LTHRHPRLIFPG-KGCNTDNPMDRGGVQKAMKLVLKDCGINKPISPHSLRHC 121 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 FATHLL G DLRS+Q +LGH L+TT YT + D + I Sbjct: 122 FATHLLEQGLDLRSLQILLGHASLNTTARYTRMTQIKQRDAALAI 166 >gi|12831423|gb|AAK02079.1| site-specific recombinase IntIA [Aliivibrio fischeri] Length = 327 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 107/226 (47%), Gaps = 50/226 (22%) Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173 L + KK+ LP + +A+++++ + +H TK I L+YG GLRI+EA Sbjct: 99 LEFKRSKKATKLPTVFSHSEAISVINEL----NHPTKLI-------AQLMYGSGLRINEA 147 Query: 174 LSLTPQNIMDDQSTLRIQ-GKGDKIR-------IVPLLPSVRKAILEYYDLCPFDLNLNI 225 L L +I T+ I+ GKG+K R I+P L + + + + + + + + Sbjct: 148 LRLRVDDIDLIHKTITIRNGKGNKDRTTVLPDSIIPELKTQLAFVKQQHKMDAINGDDEV 207 Query: 226 QLP------------------LF--RGIRGKP----------LNPGVFQRYIRQLRRYLG 255 LP +F + I P L+ V Q+ + + L Sbjct: 208 YLPNAIAKKYPHRAKSYGWQYVFPSKQISKDPRSGQRRRHHMLDRSV-QKQVTNAIKKLE 266 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + ++HT RHSFAT +L GGDLR+IQ +LGH + TTQIYT+V Sbjct: 267 IDKKASSHTFRHSFATRILERGGDLRTIQELLGHSDIKTTQIYTHV 312 >gi|282852166|ref|ZP_06261522.1| site-specific recombinase, phage integrase family [Lactobacillus gasseri 224-1] gi|282556688|gb|EFB62294.1| site-specific recombinase, phage integrase family [Lactobacillus gasseri 224-1] Length = 139 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 49/125 (39%), Positives = 68/125 (54%), Gaps = 4/125 (3%) Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD---LCPFDLNLNIQLPLFRGIRGKPLNP 240 D + + GKG+K R VP A+ EY D L N ++ +F RG+ L Sbjct: 4 DLKIILVHGKGNKDRYVPFGKDALDALREYRDDVRLALLGQNEDLGY-VFLNNRGQKLTG 62 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + ++Q+ G+ H LRHSFAT +L+NG DLRS+Q +LGH LSTTQIYT+ Sbjct: 63 RGIEYIMQQVFIKAGVGGKVHPHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTH 122 Query: 301 VNSKN 305 V K+ Sbjct: 123 VTMKH 127 >gi|313906097|ref|ZP_07839448.1| integrase family protein [Eubacterium cellulosolvens 6] gi|313469086|gb|EFR64437.1| integrase family protein [Eubacterium cellulosolvens 6] Length = 281 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 61/252 (24%), Positives = 120/252 (47%), Gaps = 8/252 (3%) Query: 51 AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE 110 A Y EE+ + + + T + +++ +K ++ RS++ ++SF +YL + + Sbjct: 35 AAYLEEQ-RVSSFESATETNLYSYMLYLEREKKSAATVSRSIASLRSFYQYLLREHKIDK 93 Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170 +++ + +P L +A + LL K R+ A+L LLY G+R+ Sbjct: 94 DPSEHLKAPRVEKKVPEILTIDEA-----DRLLAQPDRKKNKGLRDRAMLQLLYCTGIRV 148 Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-L 229 SE + + +++ D + + + + RI+P+ R + EY + L + L Sbjct: 149 SELVHMKMEDVNLDLGYITCR-ENSRERIIPMTQGTRIILDEYLESARDSLLKGKESEYL 207 Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289 F G ++ F + ++ + G+ T HT+RHSFA H L G D+ S+Q +LGH Sbjct: 208 FCNCSGGEMSRQGFWKVLKVYAQDAGIKKDITPHTMRHSFAAHQLQKGTDIHSVQRMLGH 267 Query: 290 FRLSTTQIYTNV 301 ++T Q+Y ++ Sbjct: 268 AGVTTMQMYKDL 279 >gi|254885282|ref|ZP_05257992.1| phage integrase [Bacteroides sp. 4_3_47FAA] gi|254838075|gb|EET18384.1| phage integrase [Bacteroides sp. 4_3_47FAA] Length = 343 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 73/296 (24%), Positives = 132/296 (44%), Gaps = 30/296 (10%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTE---EKITIQTI-RQLSYTEIRAFISKRRT 80 L + R +S T SY R + F++ T +K+ I I +++ + F+ K R Sbjct: 24 LTVTRNMSHNTQMSYRDTFRMLVTFVSGKTNIAIDKLNISDISKEMVLLFLDEFVEKMRN 83 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA---LNEKQALTL 137 + R+ + L+ IKSF K++ + +R + R ++ ++ L Sbjct: 84 ASVSSRN--QRLTAIKSFAKFIAWKCPDYIDWCHQIRQIPSKKITQRQITYMDREEMEAL 141 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ----STLRIQGK 193 + L + +H+ R+ I+ L+Y G R+SE +S+ +I+ + T+ + GK Sbjct: 142 TEAPLSNRNHK---YGKRDHIIILLMYNTGARVSEVISIHVGDIVMPKKRGMGTVTLHGK 198 Query: 194 GDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 G R PL P E++DL P LF KP+ I++ Sbjct: 199 GRHERTCPLWP-------EFWDLLKPLIEGRKPDEFLFLNRFNKPMTRYCIYTLIKKYAD 251 Query: 253 YLGLPLST------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 Y+ + HT+RH+ ATHLL++G D+ ++++ LGH + TT IY ++ Sbjct: 252 YISRDYPNLRNKRPSPHTIRHTTATHLLNSGTDINTVRNWLGHASIDTTNIYAEIS 307 >gi|229162527|ref|ZP_04290488.1| hypothetical protein bcere0009_32990 [Bacillus cereus R309803] gi|228621006|gb|EEK77871.1| hypothetical protein bcere0009_32990 [Bacillus cereus R309803] Length = 304 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 69/275 (25%), Positives = 133/275 (48%), Gaps = 14/275 (5%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 + +G + T+++ + +Q FL +EK I + ++ ++ ++ + + + + Sbjct: 15 LAKGFTPKTMKNKRQEMKQLKRFL---MDEK-GISELEDINPLHLKQYVRTKHKEGLQPQ 70 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S+ +++F + +K + + NI L K +P+ L + + V ++ S Sbjct: 71 SIVSMFKMVRAFFSWCQKEEYL-KGNIAKKVELPK---VPKKLLKGFTIQEVSAMIDAFS 126 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 ++ +I+ARN AI+ +L CGLR E L QN+ ++T+ + GKG+K RI+ + P + Sbjct: 127 YKN-YIEARNKAIVAMLSDCGLRAMEVRGLLTQNV--KETTILVNGKGNKERIMFISPPL 183 Query: 207 RKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAH 263 +K ++ Y L L I F PL+ G++ +R + + H Sbjct: 184 KKILIRYERLRKQYLKDKIVKTDNYFLSYTADPLSHMGIYNVIKEAGKRVEVEEVRCSPH 243 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 T RH FA + NG D+ ++ +LGH +STTQ Y Sbjct: 244 TFRHFFAVQCILNGIDIFTLSKLLGHSDVSTTQRY 278 >gi|32472354|ref|NP_865348.1| integrase/recombinase Y4QK [Rhodopirellula baltica SH 1] gi|32443590|emb|CAD73032.1| probable integrase/recombinase Y4QK [Rhodopirellula baltica SH 1] Length = 450 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 61/180 (33%), Positives = 84/180 (46%), Gaps = 37/180 (20%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVP----LLPSVRKAI--- 210 I LLYGCG+RISE L ++I + I Q KG+K R+VP L+ +R+ + Sbjct: 242 IAKLLYGCGMRISETHRLRVKDIDFANKQIEIRQSKGNKSRLVPMPDDLIEPLRRFVKTR 301 Query: 211 --LEYYDLC--------PFDLN---------LNIQL----------PLFRGIRGKPLNPG 241 L +DL P+ L+ L Q P I L Sbjct: 302 DALHEHDLANGTASVYLPYALDRKYPSAHRELKWQYLFASHRLSRDPRTGRIHRHHLRAT 361 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 F ++R+ G+ T+HT RH FATHLL G D+R IQ +LGH + TT+IYT+V Sbjct: 362 TFPTHLRRAVEQAGILKHVTSHTFRHCFATHLLWQGTDIRQIQQLLGHSDVKTTEIYTHV 421 >gi|15643727|ref|NP_228775.1| integrase-recombinase protein [Thermotoga maritima MSB8] gi|222100583|ref|YP_002535151.1| Integrase-recombinase protein [Thermotoga neapolitana DSM 4359] gi|4981505|gb|AAD36046.1|AE001759_10 integrase-recombinase protein [Thermotoga maritima MSB8] gi|221572973|gb|ACM23785.1| Integrase-recombinase protein [Thermotoga neapolitana DSM 4359] Length = 253 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 79/289 (27%), Positives = 132/289 (45%), Gaps = 52/289 (17%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ L++ + S+ TL Y R+F F E IT +T ++ T ISK Sbjct: 4 YLEYLKVVKKRSERTLYQYRSILREFTRF------EPITPETWKEYLNT-----ISKN-- 50 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNILNMRNLKKSNSLPRA--LNE-KQALT 136 + + L +K++L + R + E N + LP+A L+E ++ + Sbjct: 51 ---APATQRNKLVVVKNYLNWRADRGLLNAEERFWNEAEPPRHTVLPKAIELDEVRRIIE 107 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGD 195 DN L AI +L G+R+SE ++L+ +I +++ + +RI+GKG+ Sbjct: 108 ACDNPLYR-------------AIFKVLANTGMRVSEIVNLSVHDISVNETARIRIKGKGN 154 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 K RI+ +V K ++E + + P R I QR +++ R G Sbjct: 155 KERII----NVSKELVEEL----MNSGFFEKKPSVRSI----------QRAVKRYARKAG 196 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + T H RHSFA L+ G L IQ++LGH +STT IY + S+ Sbjct: 197 IKKKVTPHIFRHSFAVALIERGVPLNKIQALLGHANISTTSIYLKIASE 245 >gi|268609724|ref|ZP_06143451.1| phage-specific recombinase/integrase XerD [Ruminococcus flavefaciens FD-1] Length = 342 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 75/298 (25%), Positives = 142/298 (47%), Gaps = 36/298 (12%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEK------ITIQTIRQLSYTEIRAFISKRRTQ 81 ++ LS T+++Y F + L + EEK + ++ I + + ++ + R Sbjct: 25 QKNLSPNTIRAY---ADAFKLLLIYCEEEKGIKSDRLKLENIDRELVSGFLDWLEEIRGC 81 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL------KKSNSLPRALNEKQAL 135 K R+ + L + SF +Y++K + N+ N++++ K ++ L EKQ Sbjct: 82 KTTTRN--QRLIALHSFCRYVQK---ISPENMDNLQSVIQIDYKKSKKAIVPYLTEKQM- 135 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKG 194 +LL W R+ +L +LY G R+ E L +++ ++ + + + GKG Sbjct: 136 ----KLLLAQPDGNTWQLFRDKVMLAVLYDTGARVQELCDLRIKDVRLESPAVITLTGKG 191 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLN----PGVFQRYI 247 +K+R VP++ +K +L+ Y L N I PLF RG+ L+ + +Y+ Sbjct: 192 NKVRQVPIMSGTQK-LLKIY-LEKHKGNAGISRGDNPLFVNQRGQKLSRWGVSHIIDKYV 249 Query: 248 RQLR-RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + + L + TAH RHS A H++ G +L I+ LGH +TT+IY ++++ Sbjct: 250 DMAKEKGLDVDFPITAHVFRHSKAVHMVHAGINLIYIRDFLGHVDWATTEIYAKIDTE 307 >gi|325983789|ref|YP_004296190.1| integrase family protein [Nitrosomonas sp. AL212] gi|325533308|gb|ADZ28028.1| integrase family protein [Nitrosomonas sp. AL212] Length = 316 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 73/290 (25%), Positives = 123/290 (42%), Gaps = 31/290 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W NL +K T ++YE + F+ F E+ R ++ I A+ Sbjct: 29 WFANLG-----NKATRRAYENALKDFMNFTGIQNPEEF-----RVVTRAHIIAWRDDLVN 78 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN--LKKSNSLPRALNEKQALTLV 138 + + S++ LS + S +YL +R T + + ++ ++ A+ + QA L Sbjct: 79 RSLSSMSIRHRLSALSSLFEYLCERNTVTHNPVKGVKRPAVESYEGKTPAIGDHQAREL- 137 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ---STLRIQGKGD 195 L + R+ AIL L LR E L ++ ++ ++I GKG Sbjct: 138 ----LEVPDGSSLKGKRDRAILATLLYHALRRDELCRLKVKDFKQERRGVPHIKISGKGG 193 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-------KPLNPGVFQRYIR 248 K R VPL P+ I +Y D D L FR + KP+ P + ++ Sbjct: 194 KTRYVPLHPAASGLIHDYLDAAGHDHEETGAL--FRSVSNNRIKESQKPITPDGVYKLVQ 251 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + LG + AH+LR + AT+ L + D+ +Q LGH ++TT+IY Sbjct: 252 KYSEKLGFKIG--AHSLRATAATNALDHQADIAKVQEWLGHANIATTRIY 299 >gi|186474623|ref|YP_001863594.1| integrase family protein [Burkholderia phymatum STM815] gi|184198582|gb|ACC76544.1| integrase family protein [Burkholderia phymatum STM815] Length = 343 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 80/307 (26%), Positives = 139/307 (45%), Gaps = 32/307 (10%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR- 72 LL+ Q++L L RG+S T++SY L F A + I + L+ ++ Sbjct: 13 LLRFFQDYLPTL---RGVSVHTIRSYRDAVVLLLRFTARESRCPIEALDLSDLNADHVKR 69 Query: 73 --AFISKRRTQKIGDRSLKRSLSGIKSFLKYL---KKRKITTESNILNMRNLKKSNSLPR 127 F+ R I R+ + L+ I +F +++ + +L + + + P Sbjct: 70 FLKFLESERGNSIATRNAR--LAAIHAFARFVIAEHPEHLAPFQQVLGIPFKRGAREAPI 127 Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQS 186 E + LL T +++ R+ A+ L++ G R+ E L+L ++ +D Sbjct: 128 EYLETAEI----ETLLTTIDQSRPAGQRDFALFALMFNTGARVQEILNLRICDLRLDPPP 183 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQR 245 +R++GKG+K+R+ P+ P + + E P + +LP+F RG ++ GV R Sbjct: 184 QVRLRGKGNKVRVCPIWPRTAQLLRELIRTRPLVAQGSAELPVFVNCRGTQMSRFGV--R 241 Query: 246 YIRQLRRYLGLPLSTT----------AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 Y+ LR+Y+ L ST H+LRH+ A LL G D +I LGH L+TT Sbjct: 242 YL--LRKYM-LIASTRNPTLAHKEIHPHSLRHTTAIQLLKAGVDFATISQWLGHASLNTT 298 Query: 296 QIYTNVN 302 Y + Sbjct: 299 MRYARAD 305 >gi|323183907|gb|EFZ69298.1| integrase [Escherichia coli 1357] Length = 321 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 63/237 (26%), Positives = 104/237 (43%), Gaps = 31/237 (13%) Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSN 123 Q++ + I + + RR+Q I S+ R L+ I F ++ E I + LK+ Sbjct: 88 QITKSLISQYCATRRSQGIKPSSINRDLTCISGMFTALIEAELFFGEHPIRGTKRLKEEK 147 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 L +++ L+ +D N I L G R EA L +NI+ Sbjct: 148 PDTGYLTQEEIALLLAA-----------LDGDNKKIAILCLSTGARWGEAARLKAENIIH 196 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 ++ T ++ K +K R VP+ +V K I + RG + F Sbjct: 197 NRVTF-VKTKTNKPRTVPISEAVAKMIADNK----------------RGFLFPDADYPRF 239 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 +R ++ ++ LP+ H LRHSFATH + NGG + ++Q ILGH R+ T +Y + Sbjct: 240 RRTMKAIKP--DLPMGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAH 294 >gi|332140068|ref|YP_004425806.1| putative integrase [Alteromonas macleodii str. 'Deep ecotype'] gi|332143134|ref|YP_004428872.1| putative integrase [Alteromonas macleodii str. 'Deep ecotype'] gi|327550090|gb|AEA96808.1| putative integrase [Alteromonas macleodii str. 'Deep ecotype'] gi|327553156|gb|AEA99874.1| putative integrase [Alteromonas macleodii str. 'Deep ecotype'] Length = 322 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 84/314 (26%), Positives = 132/314 (42%), Gaps = 71/314 (22%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 +K T+Q+Y ++ F F Q + L + A+++ T++ RS + + Sbjct: 19 AKRTIQTYINWISDYIRFHKF--------QHPKDLDVLHVEAYLTHLSTKRKNARSTQAT 70 Query: 92 LSGIKSFL--KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 FL KYL++ + ++ N + +K LP L + + L+ V H Sbjct: 71 ALNALVFLYNKYLEQ-PLPSDMNFVGSGRERK---LPVVLTQLEVKALLGRVPTH----- 121 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV----PLLP 204 + + LLYG GLR+ E + L +I D +RI GKG K R+V L+P Sbjct: 122 ------HYLAVALLYGSGLRLMECVRLRTGDIDFDYKCVRIWFGKGGKHRVVTLSESLIP 175 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRG-------------------------------- 232 ++ I E L DL +P F G Sbjct: 176 LLKNHISESEKLLQRDL----MVPDFAGAWIPHGLRKKYQQRNKTLEWQYLFPASKLSID 231 Query: 233 -----IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 +R ++ QR + + G+ T HTLRHSFATHLL +G D+R++Q L Sbjct: 232 PESKLLRRHHIDEKQIQRAVSRASSDAGIIKHVTPHTLRHSFATHLLQSGADIRTVQDQL 291 Query: 288 GHFRLSTTQIYTNV 301 GH + TTQIYT++ Sbjct: 292 GHADVRTTQIYTHI 305 >gi|154175082|ref|YP_001408312.1| metallo-beta-lactamase family protein [Campylobacter curvus 525.92] gi|112803167|gb|EAU00511.1| metallo-beta-lactamase family protein [Campylobacter curvus 525.92] Length = 353 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 99/187 (52%), Gaps = 12/187 (6%) Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 K LP ++E++ ++ + + + K RN I+ ++ G+R+SEAL+L ++ Sbjct: 160 KGQKLPEFMSEEEVKKFLNAI---DTADFKVNTNRNRLIIKIIVFTGIRVSEALNLKRKD 216 Query: 181 IMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILE-YYDLCPFDLNLNIQLPLFRGIRGKP 237 I +D +RI+GKG+K RIV +++A++E D+ + +N + LF +G Sbjct: 217 ISEDGELYVIRIRGKGNKYRIVM----IKRALIEDLLDMIAINY-INKEGYLFINKKGTR 271 Query: 238 LNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 L R + Q+ G+ AH LRH+FAT L DL +Q LGH L+T++ Sbjct: 272 LTQAYVSRIVEQILFRAGIRKEKNGAHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSR 331 Query: 297 IYTNVNS 303 IYT+ ++ Sbjct: 332 IYTHFDN 338 >gi|59713846|ref|YP_206621.1| XerC/CodV family integrase/recombinase [Vibrio fischeri ES114] gi|59482094|gb|AAW87733.1| integrase/recombinase (XerC/CodV family) [Vibrio fischeri ES114] Length = 327 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 107/226 (47%), Gaps = 50/226 (22%) Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173 L + KK+ LP +A+++++ + +H TK I L+YG GLRI+EA Sbjct: 99 LEFKRSKKATKLPTVFTHGEAISVINEL----NHPTKLI-------AQLMYGSGLRINEA 147 Query: 174 LSLTPQNIMDDQSTLRIQ-GKGDKIR-------IVPLLPSVRKAILEYYDLCPFDLNLNI 225 L L +I T+ I+ GKG+K R I+P L + + + + + + + + + Sbjct: 148 LRLRVDDIDLIHKTITIRNGKGNKDRTTVLPESIIPELKTQLEFVKQQHKMDAINGDDEV 207 Query: 226 QLP------------------LF--RGIRGKP----------LNPGVFQRYIRQLRRYLG 255 LP +F + I P L+ V Q+ + + L Sbjct: 208 YLPNAIAKKYPHRAKSYGWQYVFPSKQISKDPRSGQHRRHHMLDRSV-QKQVTNAIKKLE 266 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + ++HT RHSFAT +L GGDLR+IQ +LGH + TTQIYT+V Sbjct: 267 IDKKASSHTFRHSFATRILERGGDLRTIQELLGHSDIKTTQIYTHV 312 >gi|291531147|emb|CBK96732.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3] Length = 305 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 72/280 (25%), Positives = 129/280 (46%), Gaps = 20/280 (7%) Query: 24 NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS----KRR 79 N ++ R SK TL Y + F +L E + ++ +Y F+ KR Sbjct: 17 NEQLFRNNSKRTLIWYNENLSAFFNWLG----ENKNVDSLTVENYKSYCTFLQHDYVKRN 72 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTE-SNILNMRNLKKSNSLPRALNEKQALTLV 138 Q + S+ + IK+F Y + + + S L ++K+ LP L++ + TLV Sbjct: 73 GQPLKSSSVNSRVRAIKAFYNYCIEEDLLPDFSKKLKATKIRKTEKLP--LDDDEIHTLV 130 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 ++ ++ RN + L+ GLR E ++L N+ + + + GKGDK R Sbjct: 131 ------SAFGDSALEERNRCWVILMCDSGLRRGEIINLQIGNVHLARGFMIVTGKGDKQR 184 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VPL + ++ Y + + P+F G+ ++ ++L++ G+ L Sbjct: 185 FVPLGELSKISLATY--IRKYRNEAKESEPVFVNRFGEKCTINTVKQVFQKLKKQTGI-L 241 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 AH LRH+FAT+ L +GGDL +++ ++GH L T +Y Sbjct: 242 RLHAHLLRHTFATNYLVDGGDLETLRLLMGHSDLQVTMMY 281 >gi|89092929|ref|ZP_01165881.1| site-specific recombinase [Oceanospirillum sp. MED92] gi|89082954|gb|EAR62174.1| site-specific recombinase [Oceanospirillum sp. MED92] Length = 323 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 85/184 (46%), Gaps = 39/184 (21%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL---LPSVRKAILEYYDLC 217 L+YG GLR+ EA L ++I D+ ++ I +GKG K RI L S K + + LC Sbjct: 130 LMYGSGLRLMEACRLRIKDIDLDRLSIHIFEGKGKKQRITTLSEFCVSELKNQIAHARLC 189 Query: 218 --------------------------PFDLNLNIQLPLFR---------GIRGKPLNPGV 242 PF+ + LP + IR L+ Sbjct: 190 WQEDKLCHDWGGCYLPPALSRKYPNAPFEFSWQYLLPTKKRLVDERNDNAIRRHHLHERS 249 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 QR ++ G+ T H+LRHSFATHLL G D+R++Q LGH + TT+IYT+V Sbjct: 250 MQREFKRAVLKSGIAKQATCHSLRHSFATHLLERGADIRTVQEQLGHSDVRTTEIYTHVL 309 Query: 303 SKNG 306 ++ G Sbjct: 310 NRGG 313 >gi|325859510|ref|ZP_08172652.1| phage integrase, N-terminal SAM domain protein [Prevotella denticola CRIS 18C-A] gi|325482978|gb|EGC85969.1| phage integrase, N-terminal SAM domain protein [Prevotella denticola CRIS 18C-A] Length = 341 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 80/293 (27%), Positives = 143/293 (48%), Gaps = 26/293 (8%) Query: 28 ERGLSKLTLQSYE-CDTRQFLIFLAFYTE-EKITIQ--TIRQLSYTEIRAFISK-RRTQK 82 E G++ T+++Y C F + L ++ E E I Q T++ ++ I +F++ T+K Sbjct: 21 ECGVTNNTIKTYSYC----FTLLLEYFKEVELIRAQKLTLKHITKERIISFLNWLETTRK 76 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTES---NILNMRNLKKSNSLPRALNEKQALTLVD 139 + L I +F KYL+ R +T + ++L+++ KK+ +A+ Sbjct: 77 CSTNTRNARLGAIHAFFKYLQYRDVTGIAMWQDVLSIK-FKKTGVKQMPFLSVEAI---- 131 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIR 198 LL ++ R+ ++ LLY +R+ E + TP +I + T+R+ GKG+K+R Sbjct: 132 KALLDLPNQKTKKGRRDFVLIGLLYDSAMRVQELIDSTPSDIRFGEIVTIRVIGKGNKVR 191 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNP----GVFQRYIRQLRRY 253 +PL V+ L+ Y L L+ N + PLF R L+ + ++Y + L++ Sbjct: 192 TIPL-TDVQANNLKQYMLENNMLDKNKLNNPLFSNGRDGKLSRMAVLKIVKKYFQILKQN 250 Query: 254 LGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + P H LRHS A HLL +L I+ LGH ++TT++Y + K Sbjct: 251 TSIIVPDDIGCHALRHSKAIHLLEANVNLVWIRDFLGHSSVTTTEVYARASDK 303 >gi|303239112|ref|ZP_07325642.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302593450|gb|EFL63168.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 340 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 75/294 (25%), Positives = 136/294 (46%), Gaps = 29/294 (9%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTE------EKITIQTIRQLSYTEIRAFISKRRTQK 82 + +S T+ SY CDT F +FL + + K+++ I+ ++ R Sbjct: 22 KNVSSNTISSY-CDT--FRLFLEYCRDTEGMKIHKMSLCDIKPELVASFLEWLENERKNS 78 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRK---ITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 I R+ + L+ I SF+++++ + + IL++ KK++ PR L +++ ++ Sbjct: 79 ISTRNQR--LAAIHSFVRFVQTQDPKLLLNFQKILDIPIKKKASKPPRHLTKEEVAVILR 136 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIR 198 + T H R++ IL +LY R E L ++ ++ + +RI GKG K R Sbjct: 137 QPDILTLH-----GRRDATILCVLYDTAARAQELCDLRVADVRLEHPANVRITGKGRKTR 191 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG----VFQRYIRQLRRYL 254 +VPLLP+ + + Y PLF G L + +Y++Q Sbjct: 192 VVPLLPATMQNLKNYLSENRLLDPEKNHCPLFPNREGNHLTRAGLRYILTKYVQQTEEN- 250 Query: 255 GLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY--TNVNSK 304 G +S + H RH+ A H+ +G +L ++ LGH +STT +Y T++N K Sbjct: 251 GDVISKRISPHVFRHTKAMHVYESGNNLIYVRDFLGHADISTTGVYARTSLNMK 304 >gi|56475445|ref|YP_157034.1| phage-related integrase [Aromatoleum aromaticum EbN1] gi|56311488|emb|CAI06133.1| phage-related integrase [Aromatoleum aromaticum EbN1] Length = 335 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 72/280 (25%), Positives = 126/280 (45%), Gaps = 52/280 (18%) Query: 65 QLSYTEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 ++ E+ AF+S T + + + +++ + K++ + I R K+ Sbjct: 59 EMGAPEVEAFLSHLATAENVSANTQNQAMHAVLYLYKHVLGIDLPWLDGITRARESKR-- 116 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-M 182 LP + +++ L+ +V H T + I+ LLYG G+R+ E L L ++I + Sbjct: 117 -LPVVMTQRETQALLRHV-----HGT------SGTIIKLLYGTGMRLLEGLRLRVKDIDL 164 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSV---------RKAILEYYDLCPFDLNLNIQLPLFR-- 231 + + + +GKG+K R+ L S+ + ++ DL ++ + + R Sbjct: 165 ERREIIIREGKGNKDRVTMLPASLVDELRDHLQARRVIHDRDLSTGHADVELPHAIERKY 224 Query: 232 ------------------------GI-RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 GI R + V QR +R R G+P HTLR Sbjct: 225 PQAGRQWAWQYVFAAKSYSTDPRTGIYRRHHVGEWVIQRGVRAAARAAGIPKLVHPHTLR 284 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 HSFA+HLL NG D+R++Q +LGH + TT IYT+V ++ G Sbjct: 285 HSFASHLLENGSDIRTVQELLGHADVKTTMIYTHVLNRGG 324 >gi|191168019|ref|ZP_03029820.1| integrase [Escherichia coli B7A] gi|190901957|gb|EDV61705.1| integrase [Escherichia coli B7A] Length = 337 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 63/237 (26%), Positives = 104/237 (43%), Gaps = 31/237 (13%) Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSN 123 Q++ + I + + RR+Q I S+ R L+ I F ++ E I + LK+ Sbjct: 100 QITKSLISQYCATRRSQGIKPSSINRDLTCISGMFTALIEAELFFGEHPIRGTKRLKEEK 159 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 L +++ L+ +D N I L G R EA L +NI+ Sbjct: 160 PDTGYLTQEEIALLLAA-----------LDGDNKKIAILCLSTGARWGEAARLKAENIIH 208 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 ++ T ++ K +K R VP+ +V K I + RG + F Sbjct: 209 NRVTF-VKTKTNKPRTVPISEAVAKMIADNK----------------RGFLFPDADYPRF 251 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 +R ++ ++ LP+ H LRHSFATH + NGG + ++Q ILGH R+ T +Y + Sbjct: 252 RRTMKAIKP--DLPMGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAH 306 >gi|289668108|ref|ZP_06489183.1| putative integrase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 285 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 84/182 (46%), Gaps = 39/182 (21%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV----------RKAI 210 LLYG G+R+ E L L +++ + + ++ GKG K R VPL P + R + Sbjct: 87 LLYGSGMRLLECLRLRTKDVDVVRGEIVVRDGKGGKDRQVPL-PHILRGKLMQQRERALL 145 Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG---------------------------VF 243 L DL + + L R + PG V Sbjct: 146 LHDADLAEGAGRVFLPHALARKYPNVDVEPGWQYLFLAARRSVDPRSGRVGRHHLSEEVL 205 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 QR ++ RR G+ T HTLRH+FATHLL G D+R++Q +LGH ++TTQIYT+V Sbjct: 206 QRAVQVARRQAGITKPATCHTLRHAFATHLLEAGHDIRTVQELLGHKDVTTTQIYTHVLG 265 Query: 304 KN 305 + Sbjct: 266 RG 267 >gi|167470505|ref|ZP_02335209.1| tyrosine recombinase XerD [Yersinia pestis FV-1] Length = 145 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/147 (35%), Positives = 78/147 (53%), Gaps = 6/147 (4%) Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGI 233 LT ++ Q +R+ GKG+K R+VPL I Y + P+ +N LF Sbjct: 1 GLTISDVSLRQGVVRVIGKGNKERLVPLGEEAVYWIENYMEHGRPWLVNGASLDVLFPSN 60 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 R + + F I+ G+ + H LRH+FATHLL++G DLR +Q +LGH L Sbjct: 61 RSQQMTRQTFWHRIKHYAILAGIDSERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDL 120 Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHP 319 STTQIYT+V ++ + +++ Q HP Sbjct: 121 STTQIYTHVATER----LRQLHQQHHP 143 >gi|13474970|ref|NP_106607.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|13474971|ref|NP_106531.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|14025717|dbj|BAB52317.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|14025794|dbj|BAB52393.1| integrase/recombinase [Mesorhizobium loti MAFF303099] Length = 407 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 84/302 (27%), Positives = 135/302 (44%), Gaps = 18/302 (5%) Query: 6 LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ--TI 63 LPE+ + K + + L ERGLS TL +Y R FL +E+ + Sbjct: 103 LPEVDTSAKGKLIDAFGEFLRKERGLSASTLTNYLPIIRGFL-------DEQFGGKDPGF 155 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--K 121 L ++ FI RR Q K +++ ++SFL++L++R + + + + + Sbjct: 156 DHLRVGDVHRFIV-RRAQAGSLGRAKLAVTALRSFLRFLQQRGLLATDLAVAVPGIAGWR 214 Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 LP+AL +Q V+ +L T R+ A+L LL GLR E +LT ++ Sbjct: 215 LAHLPKALRAEQ----VERLLASCDRRTP-AGRRDYAVLMLLARLGLRGGEVSALTLDDL 269 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241 D + + GKG ++ +PL V A+++Y + R R ++ Sbjct: 270 DWDCGEIVVHGKGQRLARLPLPADVGAALVDYLRQDRPACSTRRVFIRTRAPRRGFVSQS 329 Query: 242 VFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 +R+ + GL P AH LRHS AT LL G L I +L H + +TTQIY Sbjct: 330 TICCIVRRALKRAGLTPAFKGAHLLRHSLATDLLRRGASLVEIGQLLRHSQPNTTQIYAK 389 Query: 301 VN 302 V+ Sbjct: 390 VD 391 >gi|218134658|ref|ZP_03463462.1| hypothetical protein BACPEC_02561 [Bacteroides pectinophilus ATCC 43243] gi|217990043|gb|EEC56054.1| hypothetical protein BACPEC_02561 [Bacteroides pectinophilus ATCC 43243] Length = 282 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 70/286 (24%), Positives = 131/286 (45%), Gaps = 32/286 (11%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 ++N +R L + T+Q Y D FL ++ + + L+ + +F++ +R + Sbjct: 9 IRNEAEKRNLRERTIQLYCSDVSYFLRWIG---------KNVSDLTLEDAESFLTAKRLE 59 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 + S IK FL Y K KI + + + +K+ +LP L+ + ++D Sbjct: 60 GRSPETHNHYRSAIK-FL-YKKVLKIVWDDDTVPA--MKRERNLPAVLSRDEINAIIDAT 115 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 + ++ AI+ +Y GLR+SE + L +I T+ ++ +I Sbjct: 116 P----------NLKHKAIIATMYSSGLRVSEVVHLHYDDISRTNMTIHVRETKGRIDRYT 165 Query: 202 LLPSVRKAIL-EYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +L +L EY+ C P D I P G L+ ++ ++ + G+ Sbjct: 166 ILSQKNLDLLTEYWFKCGRPKD----ILFP--SSWSGGYLDIASVNQFFKKSAKLAGINR 219 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 ++H RHSFA+HL +G D++ IQS+LGH +T +Y +V++K Sbjct: 220 HVSSHACRHSFASHLFESGTDIKYIQSLLGHVDPRSTDVYLHVSNK 265 >gi|126667680|ref|ZP_01738648.1| hypothetical protein MELB17_10268 [Marinobacter sp. ELB17] gi|126627783|gb|EAZ98412.1| hypothetical protein MELB17_10268 [Marinobacter sp. ELB17] Length = 303 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/149 (37%), Positives = 79/149 (53%), Gaps = 10/149 (6%) Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPF- 219 Y GLR+SE+L+LT ++ D +R+ GKG K R VPL KA+ Y+ Sbjct: 134 YSLGLRLSESLNLTIADV--DSHLMRVHVRCGKGKKDRFVPLPLMTLKALRRYWATHRHP 191 Query: 220 DLNLNIQLPLFRGI--RGKP--LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275 DL P + + GKP + G Q+ I+Q+ G+ H++ HSFATH+L Sbjct: 192 DLLFPGWHPPYASVATSGKPRVMARGGVQKAIKQVALDCGIRKHVHIHSMGHSFATHMLE 251 Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 NG +LRSIQS+LGH TT YT + + Sbjct: 252 NGVNLRSIQSLLGHASPVTTARYTRMTHE 280 >gi|198282466|ref|YP_002218787.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198282807|ref|YP_002219128.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665405|ref|YP_002425001.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] gi|218666076|ref|YP_002426784.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] gi|218666400|ref|YP_002425323.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] gi|198246987|gb|ACH82580.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198247328|gb|ACH82921.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517618|gb|ACK78204.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] gi|218518289|gb|ACK78875.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] gi|218518613|gb|ACK79199.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] Length = 414 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 87/301 (28%), Positives = 133/301 (44%), Gaps = 50/301 (16%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 +++ ERGLS +T+ + C+ + F A + T+ I + ++ AF+ + Q Sbjct: 127 RHMREERGLSPVTIAT-RCERLGW--FFAGLNPPRGTLDAI---TICDLDAFVELKGQQG 180 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-----ALNEKQALTL 137 SL S ++SF + + R + L + PR + E Sbjct: 181 WTRASLGSLASSLRSFFAFAEARGWCA-------KGLTATIESPRLYTREGIPEGPGWED 233 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 V +L+ T+ + +D R+ AIL LL GLR E +L +++ D GDKI Sbjct: 234 VQRLLVSTAGDHP-VDIRDRAILMLLALYGLRRGEVAALQLEHLDWD---------GDKI 283 Query: 198 RIV----------PLLPSVRKAILEYY-DLCP----FDLNLNIQLPLFRGIRGKPLNPGV 242 +V PLLPSV +AI+ Y D+ P L L I P+ +PL+ Sbjct: 284 CVVRPKQRIAQRYPLLPSVGEAIVRYLRDVRPQCEHRALFLTIGAPM------RPLSAES 337 Query: 243 FQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 R LGL LS AH LRH+ A+HLLS+G L+ I LGH ++ YT V Sbjct: 338 ISHVARARLNQLGLTLSPRGAHCLRHACASHLLSSGFSLKQIGDHLGHRNANSALSYTKV 397 Query: 302 N 302 + Sbjct: 398 D 398 >gi|254167363|ref|ZP_04874215.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] gi|197623626|gb|EDY36189.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] Length = 310 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 55/152 (36%), Positives = 81/152 (53%), Gaps = 11/152 (7%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----QGKGDKIRIVPLLPSVR 207 ++ARN A+L LL+ G+RI EA++L +I +L I GKG+K RIVPL P V Sbjct: 127 VNARNRALLNLLFATGIRIGEAIALNWNDIDLTNPSLPILHIRHGKGEKKRIVPLPPKVL 186 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQLRRYLGLPLSTTAHTLR 266 K +++Y + + + N +F G+ +P F R I ++ G+P AH R Sbjct: 187 KMLIDYKEKYRINSDPN---AIFTTPHGRITHP--FARKICKEAGELAGVP-QFHAHAAR 240 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 H A L +G +L +I+ LGH L TTQ Y Sbjct: 241 HWRAIAWLKDGVNLETIRRFLGHSSLKTTQRY 272 >gi|238923573|ref|YP_002937089.1| putative phage integrase/recombinase [Eubacterium rectale ATCC 33656] gi|238925721|ref|YP_002939238.1| putative phage integrase/recombinase [Eubacterium rectale ATCC 33656] gi|238875248|gb|ACR74955.1| putative phage integrase/recombinase [Eubacterium rectale ATCC 33656] gi|238877397|gb|ACR77104.1| putative phage integrase/recombinase [Eubacterium rectale ATCC 33656] gi|291524021|emb|CBK89608.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629] Length = 282 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 69/286 (24%), Positives = 133/286 (46%), Gaps = 32/286 (11%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 ++N +R L + T+Q Y D FL ++ + + L+ + +F++ +R + Sbjct: 9 IRNEAEKRNLRERTIQLYCSDVSYFLRWIG---------KNVSDLTLEDAESFLTAKRLE 59 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 RS + + +S +K+L K+ + T + + +K+ +LP L+ + ++D Sbjct: 60 G---RS-PETHNHYRSAIKFLYKKVLKTVWDDDTVPAMKRERNLPAVLSRDEINAIIDAT 115 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV 200 + ++ AI+ +Y GLR+SE + L +I T+ + + KG R Sbjct: 116 P----------NLKHKAIIATMYSSGLRVSEVVHLHYDDISRTNMTIHVRETKGRIDRYT 165 Query: 201 PLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 L + EY+ C P D I P G L+ ++ ++ + G+ Sbjct: 166 ILSQKNLDLLTEYWYKCGRPKD----ILFP--SSWTGGYLDITGVNQFFKKSAKLAGITR 219 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 ++H RHSFA+HL +G D++ IQS+LGH +T +Y +V++K Sbjct: 220 HVSSHACRHSFASHLFESGTDIKYIQSLLGHVDPRSTDVYLHVSNK 265 >gi|210622505|ref|ZP_03293210.1| hypothetical protein CLOHIR_01158 [Clostridium hiranonis DSM 13275] gi|210154218|gb|EEA85224.1| hypothetical protein CLOHIR_01158 [Clostridium hiranonis DSM 13275] Length = 302 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 71/285 (24%), Positives = 136/285 (47%), Gaps = 15/285 (5%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 L+KE +++ +E +R LS T+ SY D +++ +L E I I+ + + T+I Sbjct: 14 LIKE---YIEYIENKRKLSLNTVSSYRADLKKYKDYLE---ENNIDIKDVVE---TDILN 64 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 ++ + ++ R+ S IKSF YL KI N++ K L E++ Sbjct: 65 YLVELEKNNTSVSTIARTTSSIKSFHDYLFFSKICAIDPAKNIKKPKIKKETVEILTEEE 124 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L+ N S++ K R+ AI +LYG G+++SE + L +++ + ++ Sbjct: 125 IEALL-NFENLDSNKLK----RDKAIFEVLYGTGMKVSELIDLNVEDVDFEMGSITCSSS 179 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 +K R++PL+ +K + Y + ++ + + LF G + I++ + Sbjct: 180 KNK-RVIPLIDVTKKYLELYVNEARENVVADGENALFVSALGHRFTRQGLWKIIKKYSKK 238 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + + LRHSFA H+++ G ++ S+ ILG+ LS+ Q Y Sbjct: 239 ANIDKNINPTMLRHSFAIHMINKGANIASVNKILGNTNLSSIQSY 283 >gi|82703905|ref|YP_413470.1| Phage integrase [Nitrosospira multiformis ATCC 25196] gi|82411970|gb|ABB76078.1| Phage integrase [Nitrosospira multiformis ATCC 25196] Length = 323 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 71/296 (23%), Positives = 125/296 (42%), Gaps = 31/296 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W NL + T ++Y + F+ F ++ R ++ + A+ + Sbjct: 36 WFANLP-----NDATRRAYNNALKDFMGFTDITRPDEF-----RSVTRAHVIAWRDELVK 85 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN--LKKSNSLPRALNEKQALTLV 138 + + +++ L+ + S +YL +R T + + ++ ++ AL + QA L+ Sbjct: 86 RSLSGTTIRHRLAALSSLFEYLCERNAVTHNPVKGVKRPPVESYEGKTPALGDHQARALL 145 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGKGD 195 D H R+ A+L L LR E LT ++ ++ LR+ GKG Sbjct: 146 D-----APHSLSLKGKRDRALLATLLYHALRRDELCRLTVKDFRHERRGVRHLRVLGKGG 200 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR-------GIRGKPLNPGVFQRYIR 248 K R +PL P+ I EY + PLF G+ K L P + +R Sbjct: 201 KTRYIPLHPAASTLITEYLEAAGH--GAEDSAPLFHPVSNNCAGVSSKALTPDGVYKLVR 258 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + LG + H+LR + AT+ L + D+ +Q LGH +STT+IY + S+ Sbjct: 259 EYSSNLGFEIGP--HSLRATAATNALDHQADISKVQEWLGHANISTTRIYDHRRSR 312 >gi|315641029|ref|ZP_07896112.1| integrase/recombinase [Enterococcus italicus DSM 15952] gi|315483198|gb|EFU73711.1| integrase/recombinase [Enterococcus italicus DSM 15952] Length = 325 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 75/294 (25%), Positives = 144/294 (48%), Gaps = 28/294 (9%) Query: 26 EIERGLSKLTLQSYECDTRQFL-IFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 E RG+S+ T++ ++ +FL +F F +E+I + ++ IR F+ + + Sbjct: 17 EKARGISQKTIKKHQ----KFLKLFFDFLKKEQIYF--VEDVTPKSIRQFMLMKLEEGCA 70 Query: 85 DRSLKRSLSGIKSFLKY-LKKRKITTESN-ILNMRNLKKSNSLPRALNE---KQALTLVD 139 + + L I+++ KY + + I + N + ++ +K+ + + N+ K+ L + Sbjct: 71 ETYVNSHLRSIRAYFKYCVDEDYIRYDRNPCVRVKWVKERKVIIQTFNDMEIKEMLRVAK 130 Query: 140 NVLL---------HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 + HT ++TK+ + R+ +L +L GLRI+E ++L +I + + + Sbjct: 131 KLTFFKPQKMDKQHTGYQTKFTNQRDYLLLLILIDTGLRINEVMNLKDVHITNKELFVE- 189 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCP--FDLNL--NIQLPLFRGIRGKPLNPGVFQRY 246 GKG K RIV P + K ++Y + F+ N NI +F GK N + +R Sbjct: 190 NGKGKKDRIVHCSPLIYKEYIKYKRVANSFFEYNEIENIDNYVFLTREGKQYNYILAERA 249 Query: 247 IRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 I ++ + + + H+ RH FA L+ NG D+ IQ +LGH + TT++Y Sbjct: 250 IIKIGNQCKIRKSIRVSPHSFRHYFAQKLVRNGTDIYRIQKLLGHASIKTTEVY 303 >gi|220919754|ref|YP_002495057.1| integrase family protein [Methylobacterium nodulans ORS 2060] gi|219952174|gb|ACL62565.1| integrase family protein [Methylobacterium nodulans ORS 2060] Length = 286 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 54/152 (35%), Positives = 77/152 (50%), Gaps = 14/152 (9%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDL 216 A L + YGCGLR+SE +L +I + +R+ QGKG K R V L P + + +++ Sbjct: 126 AALSVAYGCGLRVSEIANLKVTDIDSARMLIRVEQGKGRKDRFVMLSPDLLDLLRQWW-- 183 Query: 217 CPFDLNLNIQLP---LFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 ++ P LF G + +P+ R + + HTLRHSFATH Sbjct: 184 -------RVKRPRGWLFPGQQPAQPITTRQLNRACHAAAEAARIDKRVSMHTLRHSFATH 236 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 LL D+R IQ +LGH +L TT +YT V K Sbjct: 237 LLERKTDIRVIQVLLGHRKLDTTAVYTRVALK 268 >gi|32474105|ref|NP_867099.1| integrase/recombinase [Rhodopirellula baltica SH 1] gi|32474789|ref|NP_867783.1| integrase/recombinase y4qk [Rhodopirellula baltica SH 1] gi|32444642|emb|CAD74644.1| putative integrase/recombinase [Rhodopirellula baltica SH 1] gi|32445329|emb|CAD75330.1| putative integrase/recombinase y4qk [Rhodopirellula baltica SH 1] Length = 282 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 69/242 (28%), Positives = 109/242 (45%), Gaps = 27/242 (11%) Query: 65 QLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 +LS ++R ++ RR Q ++G S+ I LK+ + + + L KSN Sbjct: 31 KLSEAQVRQYVLLRRQQLQLG------SMRPIVGALKFFFRVTVPRDWPTLQAIRFPKSN 84 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 +LP L ++ L+D + SH I +Y CGLR + L PQ++ Sbjct: 85 TLPMVLVPERCWQLIDATV--ASHL--------QVIFRAMYSCGLRGVDVRHLRPQDVDA 134 Query: 184 DQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR-----GIRGKP 237 D+ LR+ KG + R VPL + A ++ N N P + +P Sbjct: 135 DRMMLRVCTTKGHRQREVPLPQATLDAFRAHWAT---HRNPNWLFPATQRNTPASKADQP 191 Query: 238 LNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 ++ QR ++ LG S T HTLRHS+AT +L G +L+ +Q LGH L T+ Sbjct: 192 ISARTIQRGFTKVTESLGWQDSGLTPHTLRHSYATAMLDAGVNLKVLQGYLGHKNLQATE 251 Query: 297 IY 298 +Y Sbjct: 252 VY 253 >gi|254450263|ref|ZP_05063700.1| phage integrase [Octadecabacter antarcticus 238] gi|198264669|gb|EDY88939.1| phage integrase [Octadecabacter antarcticus 238] Length = 315 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 56/150 (37%), Positives = 75/150 (50%), Gaps = 8/150 (5%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDL 216 A L + YG GLR SE L +I + + + +GK K R L P + + EY+ Sbjct: 148 AALGISYGAGLRASEVCHLKVVDIDSGRMLIHVDEGKNGKDRKAMLSPGLLDLLREYW-- 205 Query: 217 CPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275 L + LF G + PL+ R + G+ T HTLRHSFATHLL Sbjct: 206 ----LEARPEGWLFPGKPKINPLSLRQLNRAFTSAKHMAGINKPATLHTLRHSFATHLLE 261 Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 G D+R IQ +LGH +LSTT YT+V +K Sbjct: 262 AGTDVRVIQVLLGHSKLSTTARYTHVAAKT 291 >gi|91218172|ref|ZP_01255121.1| putative integrase/recombinase Y4QK [Psychroflexus torquis ATCC 700755] gi|91218500|ref|ZP_01255439.1| putative integrase/recombinase Y4QK [Psychroflexus torquis ATCC 700755] gi|91183331|gb|EAS69735.1| putative integrase/recombinase Y4QK [Psychroflexus torquis ATCC 700755] gi|91183719|gb|EAS70113.1| putative integrase/recombinase Y4QK [Psychroflexus torquis ATCC 700755] Length = 203 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 58/197 (29%), Positives = 99/197 (50%), Gaps = 24/197 (12%) Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173 + + +K+ N LP LN+K+ L+ K++ ++ +L +LYGCGLR E Sbjct: 8 IQLPQIKRQNDLPIVLNKKEVRELLK--------APKYL--KHQLMLAMLYGCGLRSYEL 57 Query: 174 LSLTPQNIMDDQSTLRIQGKGDKI-RIVPLLPSVRKAILEYYDL-CPFDLNLNIQ----- 226 +L +I ++ T+ ++ + KI R VPL + + + +Y+ P N Q Sbjct: 58 CNLLQADIDFERKTVFVKKQKGKIDRYVPLSAHLIRGLQKYFKTENPVKHVFNSQKTTDC 117 Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286 LP P+ Q I++ R + TAHTLRHS+ATHLL +G ++ ++ + Sbjct: 118 LP-------GPITTRALQWVIKECRPKVNTQKKFTAHTLRHSYATHLLEDGLNIMCLKEL 170 Query: 287 LGHFRLSTTQIYTNVNS 303 LGH + TT +Y V++ Sbjct: 171 LGHAHIETTIVYLQVSN 187 >gi|212634737|ref|YP_002311262.1| Phage integrase [Shewanella piezotolerans WP3] gi|212556221|gb|ACJ28675.1| Phage integrase [Shewanella piezotolerans WP3] Length = 342 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 85/334 (25%), Positives = 143/334 (42%), Gaps = 64/334 (19%) Query: 9 IVSFELLKERQNWLQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65 +V FE+ + ++ + E R S T +SY R F+ + +I+ I Q Sbjct: 18 VVFFEVTMKESGYISAIRTEIRVRHYSYQTEKSYLYWNRYFINYCQISHGSEISASKIGQ 77 Query: 66 -LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 L Y + +S TQK ++L I +Y+ K +++ L+ K Sbjct: 78 FLCYIAEQCNVSAS-TQK-------QALCAIVFACRYVLK----MDTSGLDFPYAKAPKR 125 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MD 183 +P+ L+ ++A ++ + + I +L+G GLR+ EAL + ++I ++ Sbjct: 126 IPQVLSTEEAKQIIGQ-----------MSGDHFLIAAILFGAGLRLKEALRIRVKDIDLN 174 Query: 184 DQSTLRIQGKGDKIRIV--------PL---LPSVRK-----------------AILEYYD 215 ++S QGKG K R+ PL + VRK ++++ Y Sbjct: 175 NKSIFIHQGKGKKDRVCILPNELISPLELQIEKVRKIHNKDYKAGFGMAALPISLIKKYG 234 Query: 216 LCPFDLNLNIQLPLFR--------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 + P R I ++P F + +R + + TAHT RH Sbjct: 235 ASARKFHWQFFFPATRRCIHPSDGYICRHHIHPTAFSKALRLATKKAAIDKRVTAHTFRH 294 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 SFAT LL G DLR+IQ ++GH + TTQIYT+V Sbjct: 295 SFATALLRKGYDLRTIQELMGHTDIKTTQIYTHV 328 >gi|223041236|ref|ZP_03611485.1| hydrogenase expression/formation protein [Campylobacter rectus RM3267] gi|222877495|gb|EEF12627.1| hydrogenase expression/formation protein [Campylobacter rectus RM3267] Length = 354 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 50/142 (35%), Positives = 78/142 (54%), Gaps = 7/142 (4%) Query: 166 CGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223 G+R+SEALSL ++I +D +RI+GKG+K R+V + R+ I + D + + Sbjct: 202 TGIRVSEALSLKRKDIAEDGELYVIRIRGKGNKYRVVMI---KRRLIEAHLDAIAINY-I 257 Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRS 282 N + LF +G L R + Q+ G+ AH LRH+FAT L DL Sbjct: 258 NKEGYLFINKKGTRLTQAYVSRIVEQILFKAGIRKEKNGAHMLRHTFATMLYKKQKDLVL 317 Query: 283 IQSILGHFRLSTTQIYTNVNSK 304 +Q +LGH L+T++IYT+ +S+ Sbjct: 318 VQEVLGHASLNTSRIYTHFDSE 339 >gi|71725297|ref|YP_272272.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558887|gb|AAZ38096.1| site-specific recombinase, phage integrase family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 319 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 78/295 (26%), Positives = 126/295 (42%), Gaps = 41/295 (13%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W NL+ R T ++Y+ D F F+ + + RQ++ + + A+ + Sbjct: 32 WFANLDNRR-----TRRAYQNDLTDFSSFIGLASADDF-----RQVTRSHVLAWRADLEQ 81 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVD 139 + + +++R L+ + S YL E+N + N PR NE + L D Sbjct: 82 RGLAGATIRRKLAALASLFDYL------LENNAVAGGNPVHGVKRPRIETNEGKTPALGD 135 Query: 140 NV---LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194 + LL R+ AIL +L GLR EA L ++ + + LR+ GKG Sbjct: 136 HQAKQLLEAPDTETLKGLRDRAILAVLLYHGLRREEAAQLHTHDLQERRGIKHLRVHGKG 195 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG--------VFQRY 246 KIR +PL P + I Y L PLFR +RG V + Y Sbjct: 196 SKIRFLPLHPVAAERIYAY--LEQDSERAAKPGPLFRSLRGTTTGAAITANGIYSVVEAY 253 Query: 247 IRQ---LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 ++ + +LG+ H LR + AT+ L + D+ +Q LGH +STT++Y Sbjct: 254 AKKAGIVVEHLGV------HGLRATAATNALEHDADIAKVQMWLGHANISTTRLY 302 >gi|126665396|ref|ZP_01736378.1| putative integrase/recombinase [Marinobacter sp. ELB17] gi|126669108|ref|ZP_01740038.1| putative integrase/recombinase [Marinobacter sp. ELB17] gi|126626435|gb|EAZ97102.1| putative integrase/recombinase [Marinobacter sp. ELB17] gi|126630024|gb|EBA00640.1| putative integrase/recombinase [Marinobacter sp. ELB17] Length = 331 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 76/294 (25%), Positives = 126/294 (42%), Gaps = 27/294 (9%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L++L ER L+ T +SY Q L +LA + I T+ S +R F+S Q Sbjct: 16 LEHLVAERNLALNTQKSYRDMLMQLLPYLAGKANKAIDRLTVDDFSPQAVRLFLSHMEQQ 75 Query: 82 KIGDRSLK-RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD- 139 + S + + L GI + +++ E + ++ + +P + A+ +D Sbjct: 76 RNCTISTRNQRLGGIHALARFI------AEHSPEHIGWCAQIRLIPFKKTSQPAIIYLDK 129 Query: 140 ---NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 + LL + R A+L LY G R+SEA+ L +I +R+ GKG+K Sbjct: 130 PEMDALLAAPDDHTEQGRREQALLLFLYNSGARVSEAVQLKIGDIDWHAQCVRVVGKGNK 189 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY--- 253 R PL S + + D P+F +P+ +++ Sbjct: 190 QRRCPLWTSTLERLHVLVD------GREATQPVFLNRCHQPMTRSGIHTLVKRCAARACA 243 Query: 254 -----LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 L P+S H +RHS A HLL G D+ +I++ LGH L+TT IY ++ Sbjct: 244 RAPSLLNKPVS--PHVIRHSTACHLLQAGVDINTIRAWLGHVSLTTTNIYAEID 295 >gi|300923563|ref|ZP_07139594.1| site-specific recombinase, phage integrase family [Escherichia coli MS 182-1] gi|300420171|gb|EFK03482.1| site-specific recombinase, phage integrase family [Escherichia coli MS 182-1] Length = 337 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 63/237 (26%), Positives = 105/237 (44%), Gaps = 31/237 (13%) Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT-TESNILNMRNLKKSN 123 Q++ + I + + RR+Q I S+ R L+ I L + ++ E I + LK+ Sbjct: 100 QITKSLISQYCATRRSQGIKPSSINRDLTCISGMFTALIEAELYFGEHPIRGTKRLKEEK 159 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 L +++ L+ +D N I L G R EA L +NI+ Sbjct: 160 PDTGYLTQEEIALLLAA-----------LDGDNKKIAILCLSTGARWGEAARLKAENIIH 208 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 ++ T ++ K +K R VP+ +V K I + RG + F Sbjct: 209 NRVTF-VKTKTNKPRTVPISEAVAKMIADNK----------------RGFLFPDADYPRF 251 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 +R ++ ++ LP+ H LRHSFATH + NGG + ++Q ILGH R+ T +Y + Sbjct: 252 RRTMKAIKP--DLPMGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAH 306 >gi|91792490|ref|YP_562141.1| integron integrase [Shewanella denitrificans OS217] gi|91714492|gb|ABE54418.1| Integron integrase [Shewanella denitrificans OS217] Length = 319 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 69/251 (27%), Positives = 112/251 (44%), Gaps = 54/251 (21%) Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 K++L I +++ K E N L K +P+ L+ ++A ++ N Sbjct: 70 KQALCAIVFACRHVLK----IEPNELQFPYAKAPKRIPQVLSNEEAKLIISN-------- 117 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPS-- 205 + + I +L+G GLR+ EAL L ++I + +S +GKG K R+ +LP+ Sbjct: 118 ---LSGYHYLIGAILFGSGLRLKEALKLRVKDIDLTTKSIFVYRGKGQKDRVC-MLPNGL 173 Query: 206 ---VRKAILEYYDLCPFDLN-----LNIQLPLFRGIRGKP-------------------- 237 ++ + + L DL+ ++ + L R R Sbjct: 174 IDVLKSQMKQVKKLHEADLSDGFGLASLPISLIRKYRSNASKFHWQYIFPASRRCMHPSD 233 Query: 238 -------LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290 ++P F R +RQ G+ TAHT RHSFAT LL G D+R+IQ +LGH Sbjct: 234 NYVCRHHIHPTAFSRALRQATTNCGIDKRVTAHTFRHSFATSLLLKGHDIRTIQELLGHS 293 Query: 291 RLSTTQIYTNV 301 + TT+IYT+V Sbjct: 294 DVKTTEIYTHV 304 >gi|163783966|ref|ZP_02178933.1| recombinase [Hydrogenivirga sp. 128-5-R1-1] gi|159880762|gb|EDP74299.1| recombinase [Hydrogenivirga sp. 128-5-R1-1] Length = 291 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 74/288 (25%), Positives = 128/288 (44%), Gaps = 51/288 (17%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T+++Y D +QF E IT +I F +++++ ++ R L+ Sbjct: 21 TVKNYNVDLKQFAQIAGDKDVESIT--------KADIAKFRMVLQSKRLKSSTIARKLAC 72 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + SF +YL ++ + S I K SN +P +L ++ +++N + Sbjct: 73 LNSFFQYLIDLELISSSPITKSHRPKVSNKIPSSLTHEEIKRVIENA----------DNI 122 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM------------------DDQSTLRIQGKGDK 196 + I+ +L GLR +E L + +NI+ D + +++ GKG+K Sbjct: 123 MDKLIIKILLTTGLRSAEILDIRRENIIIERNGQLFNIDYIENLQEGDIAYIKVLGKGNK 182 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 RIVPL +V + + Y L + ++ P+F P++ R I + + G+ Sbjct: 183 ERIVPLSENVLEELFNY--LKKYKVS-----PIF------PISYHSLWRRIINIGKKAGV 229 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 L H LRH+ AT L +G +LR IQ +LGH TT Y VN K Sbjct: 230 ILH--PHKLRHTAATLALQSGAELRVIQELLGHASPLTTARYAKVNQK 275 >gi|58583855|ref|YP_202871.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84625654|ref|YP_453026.1| site-specific recombinase IntIA [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188574819|ref|YP_001911748.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae PXO99A] gi|58428449|gb|AAW77486.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84369594|dbj|BAE70752.1| site-specific recombinase IntIA [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188519271|gb|ACD57216.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 291 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 90/182 (49%), Gaps = 39/182 (21%) Query: 162 LLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD---- 215 LLYG G+R+ E L L +++ + + +R+ GKG K R VPL S+R +++ + Sbjct: 93 LLYGSGMRLLECLRLRIKDVDVVRGEIVVRV-GKGGKDRWVPLPHSLRGELMQQRERALL 151 Query: 216 -------------LCPFDL-----NLNIQLP---LF----RGIRGKPLNPG-------VF 243 P L N +++ LF R + + G V Sbjct: 152 LHAADLAEGAGRAFLPHALARKYPNADVEHGWQYLFPAAPRSVDPRSGRVGRHHVSEKVL 211 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 QR ++ R+ GL T HTLRHSFATHLL G D+R++Q +LGH ++TTQIYT+V Sbjct: 212 QRAVQAARQQAGLAKPATCHTLRHSFATHLLEAGHDIRTVQELLGHKDVATTQIYTHVLG 271 Query: 304 KN 305 + Sbjct: 272 RG 273 >gi|300854163|ref|YP_003779147.1| phage related integrase [Clostridium ljungdahlii DSM 13528] gi|300434278|gb|ADK14045.1| phage related integrase [Clostridium ljungdahlii DSM 13528] Length = 336 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 85/291 (29%), Positives = 131/291 (45%), Gaps = 23/291 (7%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF---ISKRRTQ 81 L+ E G S T++SY F ++ + KI + LS + F I K R Sbjct: 18 LDREAGFSPNTIKSYRDTFILFFRYIELFRICKINKLNMDILSADNVNDFLNWIEKERQC 77 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKR---KITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + R+ + L+ +KSF Y+ + K +L +R K + LN +A++ Sbjct: 78 TVSSRN--QRLAALKSFCIYVIRENPEKSDICQQVLGIRAKKATQKSIGYLN-IEAISY- 133 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKI 197 LL +T R+ A+L LLY G R+ E + L +I +T+ + GKG+KI Sbjct: 134 ---LLKMPDKTSDRGIRDLALLALLYETGCRVQEIIDLKIGDISFRIPNTVALTGKGNKI 190 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG----VFQRYIRQLRR- 252 R+VP+ V + I Y + N + +F G PL+ + +Y R+ Sbjct: 191 RVVPISQQVSEIIKNYLSIST---RHNFEENIFVNRLGNPLSRSGVAYILNKYGDMARKN 247 Query: 253 YLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 L L P H LRHS A HLL N +L I+ LGH ++TT+IY N Sbjct: 248 RLDLYPYKLHPHILRHSKAMHLLENNVNLIYIRDFLGHSSVTTTEIYARCN 298 >gi|254478357|ref|ZP_05091736.1| site-specific recombinase, phage integrase family [Carboxydibrachium pacificum DSM 12653] gi|214035715|gb|EEB76410.1| site-specific recombinase, phage integrase family [Carboxydibrachium pacificum DSM 12653] Length = 306 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 58/276 (21%), Positives = 131/276 (47%), Gaps = 9/276 (3%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRS 87 + L+++T++ YE + F ++ ++ I I + I+A++S R+ + K + Sbjct: 17 KNLTEITVKGYERSLKAFHDYII----QQHQILNIEDVRPYHIKAYLSYRKKELKNNAET 72 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 + + +K+F Y K ++ E+ + ++K+++ + ++ Sbjct: 73 INHEIRNLKAFFNYFVKERVINENPV--TVPVQKTDTKIETFTDYHIRQMLRYYRKQKQR 130 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207 + R ++ +L G G+R+ E +L ++I + + + GKG + R +PL +++ Sbjct: 131 GDNFYAYRGYIMILILLGTGIRLGEMCNLRWKDIDFVNAKMTVIGKGRRQRTIPLTDNLK 190 Query: 208 KAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTL 265 K ++E+ L N+ + GK +N + + ++L++ + + + HT Sbjct: 191 KELMEWRFYVEKKLGNVTEDSFVIPTQTGKRMNENSVKTFFQRLKKIMNFRDVRLSPHTF 250 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 RH+FA + +GGD+ S+Q ILGH + T Y N+ Sbjct: 251 RHTFAKQWILSGGDVFSLQRILGHSTIEVTNKYVNL 286 >gi|160873053|ref|YP_001557059.1| integron integrase [Shewanella baltica OS195] gi|160858575|gb|ABX51799.1| integron integrase [Shewanella baltica OS195] Length = 319 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 65/230 (28%), Positives = 103/230 (44%), Gaps = 50/230 (21%) Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169 E N L K +P+ L+ ++A ++ N + + I +L+G GLR Sbjct: 87 EPNELQFPYAKAPKRIPQVLSNEEAKLIISN-----------LSGYHYLIGAILFGSGLR 135 Query: 170 ISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPS-----VRKAILEYYDLCPFDLN- 222 + EAL L ++I + +S +GKG K R+ +LP+ ++ + + L DL+ Sbjct: 136 LKEALKLRVKDIDLTTKSIFVYRGKGQKDRVC-MLPNGLIDVLKSQMKQVKKLHEADLSD 194 Query: 223 ----LNIQLPLFRGIRGKP---------------------------LNPGVFQRYIRQLR 251 ++ + L R R ++P F R +RQ Sbjct: 195 GFGLASLPISLIRKYRSNASKFHWQYLFPASRRCMHPSDNYVCRHHIHPTAFSRALRQAT 254 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G+ TAHT RHSFAT LL G D+R+IQ +LGH + TT+IYT+V Sbjct: 255 TNCGIDKRVTAHTFRHSFATSLLLKGHDIRTIQELLGHSDVKTTEIYTHV 304 >gi|258514706|ref|YP_003190928.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] gi|257778411|gb|ACV62305.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] Length = 342 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 79/306 (25%), Positives = 135/306 (44%), Gaps = 15/306 (4%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 G S T++SY F ++ IT T Q + I F+ Q + Sbjct: 26 GRSPDTIESYRDALTIFRRYVLNELNISITKFTFAQCTRNCIFGFLEYLAAQGNKPGTRN 85 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 + L+ +KS+L + + +T +S L + + + L + EK L+ + + Sbjct: 86 QRLAALKSYLWFAADKDVTLQSIALELSRIPQ---LKNPVTEKFVLSEEALNAIFIQPAS 142 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVR 207 + R+ I+ LLY +R++E L+L +I D +R+ GKG K R+V + Sbjct: 143 SRMGLRDRTIMILLYDSAVRLAEILNLRVNDICLNQDNPYIRVMGKGSKERVVAINIKTV 202 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKP--LNPGVFQRYIRQL-----RRYLGLPLST 260 K + +Y D+ N + L + I+G+ ++ G +R+I+Q +PL Sbjct: 203 KHVNQYLDVYRSRDNPDSNLLFYTVIKGRAGKMSEGNVERFIQQYADKARESCPDIPLRV 262 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 H LR + AT+L NG +L I ILGH L TT++Y +K M E D Sbjct: 263 YPHMLRRTRATNLYQNGIELALISRILGHAFLDTTRVYY---AKPSLAMMREAMDSVEAP 319 Query: 321 ITQKDK 326 T+++K Sbjct: 320 QTREEK 325 >gi|253681402|ref|ZP_04862199.1| putative integrase/recombinase [Clostridium botulinum D str. 1873] gi|253561114|gb|EES90566.1| putative integrase/recombinase [Clostridium botulinum D str. 1873] Length = 274 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 77/269 (28%), Positives = 124/269 (46%), Gaps = 27/269 (10%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 S+ T+ SY D QF +L K + I+ E + F+ + KI +++ R Sbjct: 18 SEKTIDSYIRDISQFNDYLK---TNKKKLAKIKISDIDEFKNFLIYHKELKI--KTINRK 72 Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 L IK +LK+ I+ + + ++ N L L+ + ++N++ T + Sbjct: 73 LVSIKQYLKF---NNISVD---IKQEKVQMQNFLDDMLSNQD----IENIIKATYAKD-- 120 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211 D R I+Y LY G+R+SE L LT + +S++ I GKG K R V +P+ K I Sbjct: 121 -DLRARTIIYTLYYTGMRVSEMLQLTIYDTK--KSSISIIGKGSKHREV-FVPNKLKTIW 176 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFA 270 + Y + + LF G RG P+N I+ G+ S AH RH + Sbjct: 177 DNY----LQVRIKKSTALFTGKRG-PINRKTVDSIIKTYAEAAGVDKSKAHAHNFRHLYC 231 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYT 299 +L G D+ +I I GH ++TT+IYT Sbjct: 232 KNLADRGIDISTIADIAGHQNINTTRIYT 260 >gi|332088977|gb|EGI94089.1| integrase [Shigella boydii 5216-82] Length = 337 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 63/237 (26%), Positives = 105/237 (44%), Gaps = 31/237 (13%) Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT-TESNILNMRNLKKSN 123 Q++ + I + + RR+Q I S+ R L+ I L + ++ E I + LK+ Sbjct: 100 QITKSLISQYCATRRSQGIKPSSINRDLTCISGMFTALIEAELYFGEHPIRGTKRLKEEK 159 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 L +++ L+ +D N I L G R EA L +NI+ Sbjct: 160 PNTGYLTQEEIALLLAA-----------LDGDNKKIAILCLSTGARWGEAARLKAENIIH 208 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 ++ T ++ K +K R VP+ +V K I + RG + F Sbjct: 209 NRVTF-VKTKTNKPRTVPISEAVAKMIADNK----------------RGFLFPDADYPRF 251 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 +R ++ ++ LP+ H LRHSFATH + NGG + ++Q ILGH R+ T +Y + Sbjct: 252 RRTMKAIKP--DLPMGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAH 306 >gi|254787261|ref|YP_003074690.1| site-specific recombinase, phage integrase family [Teredinibacter turnerae T7901] gi|237687132|gb|ACR14396.1| site-specific recombinase, phage integrase family [Teredinibacter turnerae T7901] Length = 317 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 77/307 (25%), Positives = 138/307 (44%), Gaps = 36/307 (11%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE-EKITIQTIRQLSYTEIRAFISKRR 79 +L + + LS ++++YE D + FL+ + EKI + I + F+ Sbjct: 10 FLDYCQYTKKLSHHSIRAYERDLQTFLVVVGRRARLEKIDRKIITK--------FVDACF 61 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALN--EKQALT 136 + ++KR L+ +K+ K+L+ +I +S ++ + LPR L+ E L Sbjct: 62 ADGLSHATVKRRLACLKALFKWLENEEILDDSPFRKFELKVRLPHRLPRNLSVQELNKLL 121 Query: 137 LVDNVLLHTSHETKWIDARNSAI-------------LYLLYGCGLRISEALSLTPQNIMD 183 + L + + +++ + LL+ G+R+ E + Q+I Sbjct: 122 RICRSRLGLPKNSDYRVGEFASVSRSNLNHLTTLVCVELLFTTGVRVGELTGIRLQDIYL 181 Query: 184 DQSTLRIQGKGDKIRIVPLL-PSVRKAILEYYDL----CPFDLNLNIQLPLFRGIRGKPL 238 + + I+GKG + R V + S+R I Y L P D NL + RG+P Sbjct: 182 QEKFIHIRGKGQRERRVFVTDKSIRNLIESYIQLRKITTPIDQNLLV------NSRGRPA 235 Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + + +++ + L T H RHS AT LL+NG D+ +Q +LGH +STTQIY Sbjct: 236 TSQMVRIWLKNCSKAANLTRVATPHMYRHSTATELLNNGVDIIYVQKLLGHQSISTTQIY 295 Query: 299 TNVNSKN 305 +V+ + Sbjct: 296 AHVSHSD 302 >gi|255616612|ref|XP_002539765.1| conserved hypothetical protein [Ricinus communis] gi|223502581|gb|EEF22619.1| conserved hypothetical protein [Ricinus communis] Length = 117 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 41/91 (45%), Positives = 55/91 (60%), Gaps = 4/91 (4%) Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288 LF RG+P+ F I+ GLP + HTLRH+FATHLL++G DLR +Q +LG Sbjct: 29 LFPNRRGEPMTRQAFWYRIKHYALLAGLPKLPSPHTLRHAFATHLLNHGADLRVVQLLLG 88 Query: 289 HFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LSTTQIYT+V + +++Q HP Sbjct: 89 HADLSTTQIYTHVAQAR----LKSLHEQHHP 115 >gi|300901301|ref|ZP_07119398.1| site-specific recombinase, phage integrase family [Escherichia coli MS 198-1] gi|300355266|gb|EFJ71136.1| site-specific recombinase, phage integrase family [Escherichia coli MS 198-1] Length = 337 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 66/237 (27%), Positives = 104/237 (43%), Gaps = 31/237 (13%) Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSN 123 Q++ + I + + RR+Q I S+ R L+ I F ++ E I + LK+ Sbjct: 100 QITKSLISQYCATRRSQGIKPSSINRDLTCISGMFTALIEAELFFGEHPIRGTKRLKEEK 159 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 E LT + LL + +D N I L G R EA L +NI+ Sbjct: 160 P------ETGYLTQEEIALLLAA-----LDGDNKKIAILCLSTGARWGEAARLKAENIIH 208 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 ++ T ++ K +K R VP+ +V K I + RG + F Sbjct: 209 NRVTF-VKTKTNKPRTVPISEAVAKMIADNK----------------RGFLFPDADYPRF 251 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 +R ++ ++ LP H LRHSFATH + NGG + ++Q ILGH R+ T +Y + Sbjct: 252 RRTMKAIK--PDLPTGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAH 306 >gi|168789050|ref|ZP_02814057.1| integrase [Escherichia coli O157:H7 str. EC869] gi|261225024|ref|ZP_05939305.1| integrase [Escherichia coli O157:H7 str. FRIK2000] gi|261257629|ref|ZP_05950162.1| integrase [Escherichia coli O157:H7 str. FRIK966] gi|331678036|ref|ZP_08378711.1| integrase [Escherichia coli H591] gi|189371222|gb|EDU89638.1| integrase [Escherichia coli O157:H7 str. EC869] gi|320172729|gb|EFW47964.1| Integrase [Shigella dysenteriae CDC 74-1112] gi|323944901|gb|EGB40966.1| phage integrase [Escherichia coli H120] gi|324118070|gb|EGC11969.1| phage integrase [Escherichia coli E1167] gi|331074496|gb|EGI45816.1| integrase [Escherichia coli H591] Length = 337 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 66/237 (27%), Positives = 104/237 (43%), Gaps = 31/237 (13%) Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSN 123 Q++ + I + + RR+Q I S+ R L+ I F ++ E I + LK+ Sbjct: 100 QITKSLISQYCATRRSQGIKPSSINRDLTCISGMFTALIEAELFFGEHPIRGTKRLKEEK 159 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 E LT + LL + +D N I L G R EA L +NI+ Sbjct: 160 P------ETGYLTQEEIALLLAA-----LDGDNKKIAILCLSTGARWGEAARLKAENIIH 208 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 ++ T ++ K +K R VP+ +V K I + RG + F Sbjct: 209 NRVTF-VKTKTNKPRTVPISEAVAKMIADNK----------------RGFLFPDADYPRF 251 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 +R ++ ++ LP H LRHSFATH + NGG + ++Q ILGH R+ T +Y + Sbjct: 252 RRTMKAIKP--DLPTGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAH 306 >gi|291525804|emb|CBK91391.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629] Length = 261 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 71/267 (26%), Positives = 128/267 (47%), Gaps = 27/267 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +N+++ ++ L TL++Y+ D RQF E+I+I I ++ + + ++I+ Sbjct: 9 KNYIEYCTAQKRLDTKTLKAYKIDLRQF--------SEQISITEIEYITTSVLESYITNL 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN-----LKKSNSLPRALNEKQ 133 Q+ +S+KR ++ IK+F YL+ + I ILN N ++ LP+ + K Sbjct: 61 H-QQYSPKSVKRKIASIKAFFHYLEYKDII----ILNPFNKLQIKFREPVILPKTIPLK- 114 Query: 134 ALTLVDNVLLHTSHET-----KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 L ++ N H+T K R+ A+L LL+ G+RISE S+ QN+ + + Sbjct: 115 TLEVLFNAAYAKYHKTTSPCQKRKTLRDIAVLELLFATGIRISELCSILLQNMDLQNNII 174 Query: 189 RIQGKGDKIRIVPLL-PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 I GKG K R++ + P+V + +YY + ++ F G L+ + I Sbjct: 175 LIHGKGSKERLIHICDPNVLNILNQYYT--EYYSQISACGYFFVNNTGNRLSDQSVRDMI 232 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLL 274 + R + T H RH+FA ++L Sbjct: 233 NKYCRIADIDYHITPHMFRHTFAMNIL 259 >gi|169826673|ref|YP_001696831.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41] gi|168991161|gb|ACA38701.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41] Length = 275 Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 77/151 (50%), Gaps = 4/151 (2%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ AI+ L G R+SE +L ++I D+ T + GKG+KIR + A+ Y Sbjct: 119 RDRAIILFLLTSGCRVSEMSALNIKDINMDKHTAEVVGKGNKIRTIHFSLECAIALQNYL 178 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 D + PLF G L G + ++++ + GL H RH+FAT+LL Sbjct: 179 QARTCD----PKEPLFMNKFGDRLLNGGIRGVLKKVGKQAGLEKIFHPHCCRHTFATNLL 234 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + G DL+ I +GH L+TT+IY + S++ Sbjct: 235 ARGADLQFIADEMGHADLNTTRIYAQIPSED 265 >gi|149200178|ref|ZP_01877201.1| phage integrase [Lentisphaera araneosa HTCC2155] gi|149136715|gb|EDM25145.1| phage integrase [Lentisphaera araneosa HTCC2155] Length = 328 Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 67/224 (29%), Positives = 106/224 (47%), Gaps = 33/224 (14%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 ++K G+ F KY+ R E N + ++ + LP L +K+ + +VL S Sbjct: 67 TVKSDRCGLAFFYKYVLSR----EFNWGKIIRIQTVHKLPSVLTQKE----IAHVL---S 115 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPS 205 + +W R+ L +Y GLR+SEAL + P +I ++ L I+ KG + R+VPL P Sbjct: 116 YVKRW---RHRVCLTAIYSMGLRVSEALKMRPSDICVERKILHIRNSKGCRDRLVPL-PD 171 Query: 206 VRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKP--------LNPGVFQRYIRQLRRYLG 255 + ++ D L+ + P +F IR K + G Q R G Sbjct: 172 LSLQMIN-------DFWLSHRSPNYIFPQIRDKSNMVNIDKHMYIGAVQGAFRMAVLESG 224 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 + + H LRHS+ATH++ G + +IQ ILGH + TT IY Sbjct: 225 IMKRVSVHNLRHSYATHMMEKGVPIMAIQEILGHRDIKTTMIYA 268 >gi|38637723|ref|NP_942697.1| putative integrase/recombinase [Ralstonia eutropha H16] gi|32527061|gb|AAP85811.1| putative integrase/recombinase [Ralstonia eutropha H16] Length = 336 Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 81/155 (52%), Gaps = 6/155 (3%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212 R++ +L +LY G R+ E + L ++ +D + +R+ GKG K R VPL+ S + +L+ Sbjct: 146 CRDAVMLSVLYDTGARVQELIDLNAGDVRLDPPAQVRLMGKGRKPRAVPLMDSTVELLLQ 205 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLN-PGV---FQRYIRQLRR-YLGLPLSTTAHTLRH 267 Y D PLF+ +G L+ GV Q+Y+ +RR + + H+LRH Sbjct: 206 YRRDNHLDRPEYADKPLFQNRQGTRLSRSGVRYLLQKYVIPVRRSHPDFTQRVSPHSLRH 265 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + HLL +G L I+ LGH + TT+IY N Sbjct: 266 TKGMHLLQSGVPLEIIRDFLGHVDVKTTEIYARAN 300 >gi|254162098|ref|YP_003045206.1| integrase [Escherichia coli B str. REL606] gi|253973999|gb|ACT39670.1| integrase [Escherichia coli B str. REL606] Length = 337 Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 66/237 (27%), Positives = 104/237 (43%), Gaps = 31/237 (13%) Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSN 123 Q++ + I + + RR+Q I S+ R L+ I F ++ E I + LK+ Sbjct: 100 QITKSLISQYCATRRSQGIKPSSINRDLTCISGMFTALIEAELFFGEHPIRGTKRLKEEK 159 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 E LT + LL + +D N I L G R EA L +NI+ Sbjct: 160 P------ETGYLTQEEIALLLAA-----LDGDNKKIAILCLSTGARWGEAARLKAENIIH 208 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 ++ T ++ K +K R VP+ +V K I + RG + F Sbjct: 209 NRVTF-VKTKTNKPRTVPISEAVAKMIADNK----------------RGFLFPDADYPRF 251 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 +R ++ ++ LP H LRHSFATH + NGG + ++Q ILGH R+ T +Y + Sbjct: 252 RRTMKAIK--PDLPTGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAH 306 >gi|302035314|ref|YP_003799985.1| class 3 integrase Int3 [Escherichia coli] gi|28207197|gb|AAO32355.1| IntI3 integrase [Klebsiella pneumoniae] gi|262234436|gb|ACY39221.1| Int3 [Escherichia coli] Length = 346 Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 61/184 (33%), Positives = 94/184 (51%), Gaps = 39/184 (21%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV----PLLPSVRKAILEYYDL 216 LLYG GLR+ EAL L +++ D+ + ++ GKGDK R+V L+P +R +++ + Sbjct: 148 LLYGSGLRLREALGLRVKDVDFDRHAIIVRSGKGDKDRVVMLPRALVPRLRAQLIQVRAV 207 Query: 217 CPFDLNLN---IQLP------------------LFRGIRGKPLNP--GVFQRYI------ 247 D + LP +F + ++P GV +R+ Sbjct: 208 WGQDRATGRGGVYLPHALERKYPRAGESWAWFWVFPSAK-LSVDPQTGVERRHHLFEERL 266 Query: 248 -RQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 RQL++ + G+ + HTLRHSFATHLL G D+R++Q +LGH +STT IYT+V Sbjct: 267 NRQLKKAVVQAGIAKHVSVHTLRHSFATHLLQAGTDIRTVQELLGHSDVSTTMIYTHVLK 326 Query: 304 KNGG 307 G Sbjct: 327 VAAG 330 >gi|332292898|ref|YP_004431507.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5] gi|332170984|gb|AEE20239.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5] Length = 274 Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 99/204 (48%), Gaps = 19/204 (9%) Query: 104 KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163 K + E ++ ++R LP L+ + V ++L HT+ + ++ A L + Sbjct: 77 KEALRQEIDLSSLRPRSPQRVLPDILSTYE----VKSILHHTT------NLKHKAALTTI 126 Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYY-DLCPFDL 221 Y GLR+ E + L + ++T+ I+ KG K R +P S++ + +YY + P D Sbjct: 127 YALGLRVGELVDLRLAAMDKKRNTITIKAAKGKKDRQLPFPESLKPLLRQYYKEYKPTDY 186 Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281 LF G + R + + T H+LRH++ATHL+ +G DLR Sbjct: 187 -------LFEGQSKPQYTAASLRSVFRASCKKARIKKKVTLHSLRHAYATHLMDSGTDLR 239 Query: 282 SIQSILGHFRLSTTQIYTNVNSKN 305 IQ +LGH + TT IYT+V +++ Sbjct: 240 MIQELLGHSDIKTTMIYTHVTTRS 263 >gi|282879915|ref|ZP_06288640.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1] gi|281306217|gb|EFA98252.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1] Length = 292 Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 72/284 (25%), Positives = 128/284 (45%), Gaps = 35/284 (12%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L E+ S LT+++Y D F F QLS+ I + I + Sbjct: 3 KEFLDYLRFEKNRSALTVKNYGKDLMAFEEFFRLLEP---------QLSWESIDSNIIRD 53 Query: 79 RTQKIGDR-----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 + + DR S+ R LS ++SF ++ R + + + + KK LP+ + E + Sbjct: 54 WMESMMDRGNNATSINRRLSALRSFYRFALTRGLVDKDPTITIVGPKKKKPLPQFVKESE 113 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 +D +L ++ D ++ Y G+R++E + L +I +L++ GK Sbjct: 114 ----MDALLAFKLEVNQYKDVLAHTLVETFYCTGMRLAELIGLDEASIDFAHQSLKVLGK 169 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQLRR 252 +K R +P ++++ L+YY + D + Q F G+ L Q+R Sbjct: 170 RNKERYIPFGAELKES-LQYY-ISIRDQQVQRQSTAFFVDKDGQRLTHN-------QVRY 220 Query: 253 YLGLPLST-------TAHTLRHSFATHLLSNGGDLRSIQSILGH 289 + LST T H LRH+FAT ++++G L S+Q +LGH Sbjct: 221 AVNKCLSTVTTLKKRTPHVLRHTFATAMMNHGAGLESVQQLLGH 264 >gi|120611395|ref|YP_971073.1| phage integrase family protein [Acidovorax citrulli AAC00-1] gi|120589859|gb|ABM33299.1| phage integrase family protein [Acidovorax citrulli AAC00-1] Length = 352 Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 63/180 (35%), Positives = 88/180 (48%), Gaps = 23/180 (12%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ A L LLYG GLR +E L L + D +R+ GKG K R+V L R I +Y Sbjct: 164 RDRAALELLYGAGLRSAELLGLHVAQV-PDAPGMRLMGKGAKERLVILGEHARYWIAQYK 222 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLN-----PGVFQRY-IRQLRRYLG-----LPLSTTAH 263 + L G R N G+ Y QLRR +G + LS T H Sbjct: 223 AVRRTLLGSG-------GHRATATNRLFVSTGIHPDYQYSQLRRMVGRYAAMVGLSLTPH 275 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323 +LRH+FA+HL + L++IQ +LGH L+TT IY + + ++ ++ DQ HP Q Sbjct: 276 SLRHAFASHLYQHKAPLKTIQLLLGHEHLATTTIYVSRHFEDD----HKLLDQHHPRGGQ 331 >gi|149774736|gb|ABR28408.1| integrase [Delftia tsuruhatensis] gi|151500312|gb|ABS12091.1| integrase [Delftia acidovorans] Length = 346 Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 61/184 (33%), Positives = 94/184 (51%), Gaps = 39/184 (21%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV----PLLPSVRKAILEYYDL 216 LLYG GLR+ EAL L +++ D+ + ++ GKGDK R+V L+P +R +++ + Sbjct: 148 LLYGSGLRLREALGLRVKDVDFDRHAIIVRSGKGDKDRVVMLPRALVPRLRAQLIQVRAV 207 Query: 217 CPFDLNLN---IQLP------------------LFRGIRGKPLNP--GVFQRYI------ 247 D + LP +F + ++P GV +R+ Sbjct: 208 WGQDRATGRGGVYLPHALERKYPRAGESWAWFWVFPSAK-LSVDPQTGVERRHHLFEERL 266 Query: 248 -RQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 RQL++ + G+ + HTLRHSFATHLL G D+R++Q +LGH +STT IYT+V Sbjct: 267 NRQLKKAVVQAGIAKHVSVHTLRHSFATHLLQAGTDIRTVQELLGHSDVSTTMIYTHVLK 326 Query: 304 KNGG 307 G Sbjct: 327 VAAG 330 >gi|15866616|gb|AAL10406.1|AF416297_1 IntI3 integrase [Serratia marcescens] gi|801874|dbj|BAA08929.1| integrase [Serratia marcescens] gi|16902299|dbj|BAB71947.1| integrase [Serratia marcescens] Length = 346 Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 61/184 (33%), Positives = 94/184 (51%), Gaps = 39/184 (21%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV----PLLPSVRKAILEYYDL 216 LLYG GLR+ EAL L +++ D+ + ++ GKGDK R+V L+P +R +++ + Sbjct: 148 LLYGSGLRLREALGLRVKDVDFDRHAIIVRSGKGDKDRVVMLPRALVPRLRAQLIQVRAV 207 Query: 217 CPFDLNLN---IQLP------------------LFRGIRGKPLNP--GVFQRYI------ 247 D + LP +F + ++P GV +R+ Sbjct: 208 WGQDRATGRGGVYLPHALERKYPRAGESWAWFWVFPSAK-LSVDPQTGVERRHHLFEERL 266 Query: 248 -RQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 RQL++ + G+ + HTLRHSFATHLL G D+R++Q +LGH +STT IYT+V Sbjct: 267 NRQLKKAVVQAGIAKHVSVHTLRHSFATHLLQAGTDIRTVQELLGHSDVSTTMIYTHVLK 326 Query: 304 KNGG 307 G Sbjct: 327 VAAG 330 >gi|226349906|ref|YP_002777019.1| putative integrase/recombinase [Rhodococcus opacus B4] gi|226245821|dbj|BAH47088.1| putative integrase/recombinase [Rhodococcus opacus B4] Length = 399 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 84/293 (28%), Positives = 134/293 (45%), Gaps = 22/293 (7%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 LL + + WL +RGL++ T+Q YE R+FL+ T L+ +++ Sbjct: 109 LLDDYRRWLIE---DRGLAEATVQRYERSARKFLL-----TGSDAGSVDPTALTGSDVSG 160 Query: 74 FI-SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALN 130 ++ ++ +G ++K ++ +++ L+YL +T S + + S+PR Sbjct: 161 YLLAEAGRCSVG--AVKGRVAEMRALLRYLFVHGMTPTLLSGAIPPVAGWRETSIPRYFA 218 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 + LL T + + ARN A+L LL GLR E L +I LR+ Sbjct: 219 RDDV-----DALLDTCDRSTALGARNFAMLMLLSMLGLRCIEIARLELDDIDWRSGHLRV 273 Query: 191 QGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 +GK ++ +PL V A+ Y D P + ++ IRG P P + +R+ Sbjct: 274 RGKARRLDTLPLPHEVGDAVAGYLRDGRPHTTDRHLFQTYRAPIRGIP--PDLLSDVVRR 331 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + GLP AH LRHS AT LLS G L I +L H L+TT IY V+ Sbjct: 332 ACKRAGLP-PAGAHRLRHSVATTLLSEGVALADISQVLRHHDLATTAIYAKVD 383 >gi|149199670|ref|ZP_01876702.1| Integron integrase; Phage integrase; Phage integrase N-terminal SAM-like domain [Lentisphaera araneosa HTCC2155] gi|149137187|gb|EDM25608.1| Integron integrase; Phage integrase; Phage integrase N-terminal SAM-like domain [Lentisphaera araneosa HTCC2155] Length = 424 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 83/264 (31%), Positives = 114/264 (43%), Gaps = 71/264 (26%) Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 ++L + F KY+ K + S L KK LP L VD V S T Sbjct: 173 QALCALVLFFKYILKCDLGDVSGSLRS---KKDVRLPVVLT-------VDEVREILSAST 222 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRK 208 + ++ L+YG GLR SE L L +++ + +L I+ GKG+K R L +++ Sbjct: 223 ----GKEQLMMKLIYGGGLRKSECLRLRIKDLDFSRGSLNIRDGKGNKDRQTLLSRDLKE 278 Query: 209 AILEYYDLCPFDLNLNIQLPLFRG---------------IRGKP---------------- 237 I D +LN LF I+ P Sbjct: 279 QI---------DCHLNEVRKLFEIDRESEVAGVFLPNALIKKYPNAGRKWAWFWLFPSEK 329 Query: 238 --LNPGVFQRYIRQ-------LRRYL-------GLPLSTTAHTLRHSFATHLLSNGGDLR 281 ++P Q+ IR+ L R+L G+ T HTLRHSFATHLL G DLR Sbjct: 330 LSIDPMTSQKTIRRHHNSGQMLSRFLKATCEDLGIKKQCTVHTLRHSFATHLLERGTDLR 389 Query: 282 SIQSILGHFRLSTTQIYTNVNSKN 305 +IQ +LGH +STTQIYT+V S N Sbjct: 390 TIQELLGHEDISTTQIYTHVLSLN 413 >gi|320333377|ref|YP_004170088.1| integrase family protein [Deinococcus maricopensis DSM 21211] gi|319754666|gb|ADV66423.1| integrase family protein [Deinococcus maricopensis DSM 21211] Length = 297 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 69/284 (24%), Positives = 130/284 (45%), Gaps = 15/284 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q++ +L+++R SK TL Y+ R LA + EE+ T L+ +++R F+ Sbjct: 8 QHFAYHLKVKR-RSKNTLNFYDVTRRT----LARFLEEQGVEATTDTLTVSQLRGFLVWL 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ-ALTL 137 Q +G + +++ + ++ ++ + RNL LP +E+Q A+T Sbjct: 63 EEQGLGPGGIHAHARALRALFNWAEREELVS-------RNLASRLELPSLPHERQPAITS 115 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 L + + R++A+L L+ G+R+ E + L ++++ ++ +R+ GKG+K Sbjct: 116 ERLWKLLGACKGAGQQLRDTAMLLTLFDTGVRVHELIGLKVEDLLFERGLIRVVGKGNKE 175 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 R VP+ A Y + + L +F G+ + + +L + G+ Sbjct: 176 RFVPIGSKAMSATSAYLRRERKQQHPGV-LHVFLSRSGEAMTRSGVSIRLAKLAKNTGIE 234 Query: 258 LSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 A H R FA L NGGD+ ++Q I+GH L T+ Y Sbjct: 235 REVCAPHAFRRGFAVEFLRNGGDVFTLQQIMGHSSLDMTRRYVT 278 >gi|227461186|gb|ACP39540.1| putative integron integrase [uncultured microorganism] Length = 318 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 76/276 (27%), Positives = 124/276 (44%), Gaps = 52/276 (18%) Query: 64 RQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122 R + E+ AF++ T+ + + ++LS + + + K ++ N++ K+ Sbjct: 57 RDMGEREVEAFLTVLATKGNVAAGTQNQALSALLFLYREVPKLELPWMENVVRA---KRP 113 Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 +P L+ ++ LL W+ A LLYG G+R+ E + L +++ Sbjct: 114 RRIPAVLSREEV-----TRLLAALEGPAWLMA------ALLYGTGMRLMECIRLRIKDVD 162 Query: 183 DDQSTLRIQ-GKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQ---LP------ 228 D+ + ++ GKG K R VPL S+R AI L DL + LP Sbjct: 163 FDRGEIVVRNGKGGKDRRVPLPLRLRESLRAAIEHACLLHASDLADGLGEAWLPHALARK 222 Query: 229 ------------LF----RGI-------RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 +F R + R ++ V QR +R R+ + T HTL Sbjct: 223 YPNAARETGWQYVFPSPQRSVDPRSGKTRRHHVDDSVLQRAVRSARKLAMIDKPATCHTL 282 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 RHSFATHLL G D+R++Q +LGH ++TT IYT+V Sbjct: 283 RHSFATHLLEAGHDIRTVQELLGHKDVATTMIYTHV 318 >gi|259909532|ref|YP_002649888.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|224965154|emb|CAX56686.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96] Length = 344 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 67/254 (26%), Positives = 123/254 (48%), Gaps = 18/254 (7%) Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLVD 139 + + R+ + +L ++ + ++L K+ + + ++ + LPR L+ +Q +V+ Sbjct: 98 EPLSPRTQRTALQPLQVWFRWLAKQNLILANPAADLELPRLEKHLPRTILSVEQVEDIVN 157 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR 198 L+T R+ A+L LL+ G+R E L + + L I QGKG + R Sbjct: 158 LCDLNTLQ-----GMRDRALLELLWSTGIRRGEVARLETWSADFSRKILTIVQGKGKQDR 212 Query: 199 IVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLF---RGIRGKPLNPGVFQRYIRQLRRYL 254 ++P+ + Y +++ P + + LF G+ G N G+ + LR Sbjct: 213 VIPVGERALWWLRHYLHEVRPEIVAVAGCKALFVAMDGVAGLTAN-GITHAVVPYLR-AA 270 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ + H RH+ AT +L NG DLR IQ++LGH + +TQIYT V+ K + ++ Sbjct: 271 GIE-KGSCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIKA----LQAVH 325 Query: 315 DQTHPSITQKDKKN 328 THP+ + D ++ Sbjct: 326 ASTHPAEREADSEH 339 >gi|302670606|ref|YP_003830566.1| tyrosine recombinase XerD [Butyrivibrio proteoclasticus B316] gi|302395079|gb|ADL33984.1| tyrosine recombinase XerD [Butyrivibrio proteoclasticus B316] Length = 292 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 74/285 (25%), Positives = 134/285 (47%), Gaps = 19/285 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 LE + S T+ SY R+ L +A + + I +I ++ + +IS + + Sbjct: 12 LETVKKASANTISSY----RRDLNRMASHMSNR-GITSIADITDDRLHGYISSMQEEHCA 66 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S+ RS+S I++F +YL + ++ N+R K + S PR + + LL Sbjct: 67 GSSIIRSVSSIRAFFRYLLENGNIQDNPAENIRTPKAARSAPRIMTSYEI-----EALLS 121 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + + R+ AIL L+Y GLR +E + L +NI + +R+ G+ R++P Sbjct: 122 QTFPNDALGKRDKAILELMYATGLRTTELVELELENIDMSLNCIRL---GEN-RVIPYGK 177 Query: 205 SVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 ++A+ EY D D + ++Q +F G P++ + I+ + G+ Sbjct: 178 KAKEALNEYLLFARDEILSDNSASLQ-KVFVNYMGNPMSRQGLWKLIKTYVKRAGIDADI 236 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 T ++LRHSF HL+ +G D+ ++Q ++G LS Y KN Sbjct: 237 TPYSLRHSFTMHLIESGADINAVQDMMGLSGLSALSQYRKAKGKN 281 >gi|258515435|ref|YP_003191657.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] gi|257779140|gb|ACV63034.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] Length = 349 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 81/288 (28%), Positives = 123/288 (42%), Gaps = 31/288 (10%) Query: 29 RGLSKLTLQSYECDTRQFLIFL--AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 R +S+ T+++Y+ + +L + +T + ITI T ++SK Q R Sbjct: 29 REVSQNTVKAYKQALETLIKYLEDSGFTRDTITIGTFTPACIEGFMVWMSKE--QNCKPR 86 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN----VL 142 + LS IK+FL+Y IT ES ++ L+ LP K+ + + N + Sbjct: 87 TCNLRLSAIKTFLRYCGHHVITNES--ISREVLE----LPMKKVRKEKIEYMSNGATAAI 140 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-------MDDQSTLRIQGKGD 195 ++ + I RN A+L LLY R+ E + + ++ D +S + ++GKGD Sbjct: 141 MNAPDNRRLIGRRNKAMLSLLYDSAARVQELVDIKVDDLYLNEKASADGESFVTLRGKGD 200 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL- 254 K+R V L P K I Y L F N PLF R L P R L+ Sbjct: 201 KLRNVNLSPKTAKLIQSY--LNEFHPRENRGAPLFYTKRAGSLWPLSVDSVSRILKENAD 258 Query: 255 -------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 +P H LR S A HL G L I +LGH ++TT Sbjct: 259 KARLCVPDIPERIHCHLLRKSRAMHLYIAGVPLPVIMELLGHASMNTT 306 >gi|307821936|ref|ZP_07652168.1| integrase family protein [Methylobacter tundripaludum SV96] gi|307823188|ref|ZP_07653418.1| integrase family protein [Methylobacter tundripaludum SV96] gi|307824260|ref|ZP_07654486.1| integrase family protein [Methylobacter tundripaludum SV96] gi|307825345|ref|ZP_07655564.1| integrase family protein [Methylobacter tundripaludum SV96] gi|307733520|gb|EFO04378.1| integrase family protein [Methylobacter tundripaludum SV96] gi|307734640|gb|EFO05491.1| integrase family protein [Methylobacter tundripaludum SV96] gi|307735963|gb|EFO06810.1| integrase family protein [Methylobacter tundripaludum SV96] gi|307736502|gb|EFO07347.1| integrase family protein [Methylobacter tundripaludum SV96] Length = 291 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 87/297 (29%), Positives = 134/297 (45%), Gaps = 44/297 (14%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 RQ + ++ + R LS T SY ++F FL + + +++ +R+ + IS Sbjct: 12 RQRMIDDMRM-RKLSPKTQASYIRVVKRFAGFLG-RSPDTASVEDLRRYQLHLVDHGISP 69 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 SL +L+G LK+L + + + M + + LP L+ ++ L Sbjct: 70 I--------SLNATLTG----LKFLFETTLDRPELLTKMHPVHVPHKLPVVLSREEVARL 117 Query: 138 ---VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGK 193 VDN+ H+T L + YG GLR SE +SL +I + TLRI QGK Sbjct: 118 IAAVDNL----KHQTA---------LSVAYGAGLRASEVVSLKVGDIDSQRMTLRIEQGK 164 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 G K R L P + + + ++ + LF G+ P++P RQL R Sbjct: 165 GSKDRYAMLSPVLLERLRAWWKFAHAQGKMLQGGWLFPGL--DPIDP----LSTRQLNRA 218 Query: 254 LGLPLS-------TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + + HTLRHSFATHLL D+R IQ +LGH +L TT +Y V + Sbjct: 219 IHAAAEAARIDKRVSMHTLRHSFATHLLEQKVDIRVIQVLLGHKKLETTALYAQVAT 275 >gi|148380317|ref|YP_001254858.1| phage integrase [Clostridium botulinum A str. ATCC 3502] gi|148289801|emb|CAL83909.1| phage integrase [Clostridium botulinum A str. ATCC 3502] Length = 331 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 78/279 (27%), Positives = 133/279 (47%), Gaps = 29/279 (10%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 GLS TL++Y+ + IF + + I T+ ++R F++ R + + S+ Sbjct: 70 GLSIKTLRNYQYN---LAIFANHLRKPLVAINTM------DLRMFLA-VRCKSMKQSSVN 119 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 +S +KSF +L + ++ ++ K+ L A+ E++ LL + +T Sbjct: 120 GQISILKSFFGWLADEEYIPKNPAKKLKQTKEPKRLRHAMTEEEI------ELLRQACKT 173 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 R A++ L G R+SEA+ + +I + +L + GKGDK R V + K Sbjct: 174 D----REKALVEFLISTGCRLSEAVGVNKDDINWYEMSLNVIGKGDKERKV-YFSTKAKI 228 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKP---LNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 +L+ Y L D N+ LF + KP L QR I+++ G+ S H R Sbjct: 229 LLKKYLLARSDENI----ALFVTSK-KPYGRLGGRSVQREIKKIASRAGINKSIYPHLFR 283 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 HSFAT+ L+ G + IQ ++GH +TTQIY ++ +N Sbjct: 284 HSFATNKLNAGMPMPVIQHLMGHESPATTQIYAELSEEN 322 >gi|239828409|ref|YP_002951033.1| integrase [Geobacillus sp. WCH70] gi|239808702|gb|ACS25767.1| integrase family protein [Geobacillus sp. WCH70] Length = 292 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 74/288 (25%), Positives = 137/288 (47%), Gaps = 22/288 (7%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT-IRQLSYTEI 71 ELL + WL E G + T++SY D + + FL E+ ++ Q + + S+ Sbjct: 3 ELLDAFKQWL----TEEGKAPKTIESYVGDIKSYQRFLG---EKAVSDQQPLSRFSFVRY 55 Query: 72 RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN----LKKSNSLPR 127 + + + ++ + ++ +K + +L+K+ I +ES I R+ S + Sbjct: 56 KQHLL---DEGFAVATINKKINSLKVYNDFLQKKGIVSESYIQLKRDRVQIAAGSEHVVT 112 Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 AL+E++ V+ +L + TK + RN I YLL G+R+SE +++ +I +T Sbjct: 113 ALSEEE----VEKLLFYLEDRTK-VSLRNKLIAYLLLYTGVRVSELVNIKLTDIDVLTAT 167 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 L I+GKG K+R + L + + I EY + L R K ++ + ++ Sbjct: 168 LMIRGKGGKVREISLRQDLVQLIKEYQIGERQESRFRESEYLLVSQRSKKMHRDAVRNWL 227 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 + + +G+ L H RH+FAT LL G DL ++ + GH ++ T Sbjct: 228 ANISKDIGIKLH--PHLFRHTFATRLLRKGVDLTTVSKLTGHSTVNMT 273 >gi|251789526|ref|YP_003004247.1| site-specific tyrosine recombinase XerC [Dickeya zeae Ech1591] gi|251789532|ref|YP_003004253.1| site-specific tyrosine recombinase XerC [Dickeya zeae Ech1591] gi|247538147|gb|ACT06768.1| integrase family protein [Dickeya zeae Ech1591] gi|247538153|gb|ACT06774.1| integrase family protein [Dickeya zeae Ech1591] Length = 369 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 7/169 (4%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213 R+ A++ LL+ G+R E L ++ + + I QGKG K R++P+ + + Y Sbjct: 168 RDRALMELLWSTGIRRGEVAVLEVYSVDASRHIVTIVQGKGKKDRVIPVGQRALRWLTYY 227 Query: 214 YDLCPFDLNLNIQLP-LFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 L +N P LF + G + L P + + G+ + H RH+ AT Sbjct: 228 LQAVRPQLLVNPHCPALFVALDGIEGLTPNGITNLVSYYIKASGIAKWGSCHLFRHAMAT 287 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 +L NG DLR IQ++LGH + +TQIYT V+ + + ++ THP+ Sbjct: 288 QMLENGADLRWIQAMLGHASVESTQIYTQVSIRA----LQAVHASTHPA 332 >gi|307266069|ref|ZP_07547615.1| integrase family protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306918938|gb|EFN49166.1| integrase family protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 291 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 80/291 (27%), Positives = 139/291 (47%), Gaps = 36/291 (12%) Query: 20 NWLQNLEIE---RGLSKLTLQSYECDTRQFLIFLA-FYTEE---KITIQTIRQLSYTEIR 72 +WL+ E E G S+ T+ SY D ++FL + + Y +E +I Q +R E R Sbjct: 2 DWLEKFEEELKQTGKSQNTIISYCTDIKEFLKWFSDTYAKEFDGRILEQDVR-----EYR 56 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 ++ K+ S+ R ++ +K+F ++L + E++I + + R ++ Sbjct: 57 NYLLN--IAKLKPSSINRKMAALKNFNQFLIQTGTGIEADICGISVADIHDREIRTISRN 114 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-------DDQ 185 + L V + R+ A++ LL G G+R+SE +SLT ++I ++ Sbjct: 115 ELNRLKRAVYASG-------NKRDIALIELLIGTGVRVSELVSLTTEDIHLTARNGKENY 167 Query: 186 STLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 S + I+ GKG+K R +PL V+KA+ EY ++ +F G RG PL Sbjct: 168 SYIVIRNGKGNKYREIPLNSQVKKALEEY-----LVTRSHLSGRIFIGQRG-PLRRESVD 221 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 + I++ R G+ +AH LRH+F T L+S + I + GH + TT Sbjct: 222 KIIKKYCRMAGIE-EISAHVLRHTFCTRLMSENVPIPIISKLAGHSSIQTT 271 >gi|237752297|ref|ZP_04582777.1| integrase/recombinase XerD [Helicobacter winghamensis ATCC BAA-430] gi|229375786|gb|EEO25877.1| integrase/recombinase XerD [Helicobacter winghamensis ATCC BAA-430] Length = 355 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 68/261 (26%), Positives = 118/261 (45%), Gaps = 17/261 (6%) Query: 57 KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116 +I +++++ + ++ F++ T + D + K + +F ++ K+ + N Sbjct: 89 QIDLESLKNVDEELLKEFLTIH-TSSLSDATKKNYRMALLNFFSFIDKQNEDEQGTSYNF 147 Query: 117 R---------NLKKSNSLPRALNEKQALTLVDNVLLHT-SHETKWIDARNSAILYLLYGC 166 R K LP +NE + +D + T H+ + ARN IL ++ Sbjct: 148 RIELKNWGGLRGKSGQKLPSFMNENEVHRFIDGINNFTFKHQD--LGARNRLILKIIIYT 205 Query: 167 GLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224 G+R+ EAL L ++IM D ++++GKG+K R+V L L+ + + Sbjct: 206 GIRVGEALGLKLKDIMQDGEFYLIQVRGKGNKPRVVMLKSKNIHTDLQLWKSTRDTMQAE 265 Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSI 283 L LF +GK L R + Q+ G+ AH LRHSFAT L DL + Sbjct: 266 EDL-LFCNHKGKKLTQAYISRIVEQVLVANGIRKEKNGAHMLRHSFATLLYQKSQDLVLV 324 Query: 284 QSILGHFRLSTTQIYTNVNSK 304 Q LGH L T++IY + + + Sbjct: 325 QEALGHASLDTSRIYMHFDKQ 345 >gi|254169467|ref|ZP_04876286.1| hypothetical protein ABOONEI_2736 [Aciduliprofundum boonei T469] gi|197621584|gb|EDY34180.1| hypothetical protein ABOONEI_2736 [Aciduliprofundum boonei T469] Length = 222 Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 55/152 (36%), Positives = 81/152 (53%), Gaps = 11/152 (7%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----QGKGDKIRIVPLLPSVR 207 ++ARN A+L LL+ G+RI EA++L +I +L I GKG+K RIVPL P V Sbjct: 39 VNARNRALLNLLFATGIRIGEAIALNWNDIDLTNPSLPILHIRHGKGEKKRIVPLPPKVL 98 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQLRRYLGLPLSTTAHTLR 266 K +++Y + + + N +F G+ +P F R I ++ G+P AH R Sbjct: 99 KMLIDYKEKYRINSDPNA---IFTTPHGRITHP--FARKICKEAGELAGVP-QFHAHAAR 152 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 H A L +G +L +I+ LGH L TTQ Y Sbjct: 153 HWRAIAWLKDGVNLETIRRFLGHSSLKTTQRY 184 >gi|212715402|ref|ZP_03323530.1| hypothetical protein BIFCAT_00297 [Bifidobacterium catenulatum DSM 16992] gi|212661708|gb|EEB22283.1| hypothetical protein BIFCAT_00297 [Bifidobacterium catenulatum DSM 16992] Length = 276 Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 63/236 (26%), Positives = 103/236 (43%), Gaps = 42/236 (17%) Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 +S Q +LK + + SF L++ + ++ ++ +K+ + PR +K Sbjct: 59 LVSWMAGQHWKPETLKAYRNTLTSFFGRLQRTSVRPDNPAADLPKVKRPKAHPRPCPDKY 118 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQ 191 L + D + +L L CGLR E + +++MDD +L ++ Sbjct: 119 ILAALAKA-----------DETETLMLRLAAECGLRRGEIAGVNSRDVMDDLLGKSLIVR 167 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 GKGDK RIVPL + +AI + C G L PG +Q ++ + Sbjct: 168 GKGDKQRIVPLPDDLAEAI----ESC-----------------GGWLFPGRWQGHVEE-- 204 Query: 252 RYLG------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 Y+G LP AH+LRH +AT + DL + +LGH + TTQIY + Sbjct: 205 SYVGKRISRLLPEGYGAHSLRHRYATATYAATHDLYLVARLLGHASVETTQIYVAM 260 >gi|257093411|ref|YP_003167052.1| integron integrase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045935|gb|ACV35123.1| integron integrase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 340 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 81/287 (28%), Positives = 127/287 (44%), Gaps = 66/287 (22%) Query: 74 FISKRRTQKIGDRSLKRSLSGI--------------KSFLKYLKKRKITTESNILN-MRN 118 F KR Q++G R ++ L+ + KS L +L K + T+ L+ + + Sbjct: 55 FHGKRHPQEMGAREVETFLTHLAVEGRVSASTQNQAKSALLFLYKEVLRTDLPWLDDVES 114 Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178 K LP L ++ L+ I+ IL LLYG G+RI E L L Sbjct: 115 AKSGKRLPVVLTPEEVQRLLGP-----------IEGTTGLILRLLYGTGMRIMECLRLRV 163 Query: 179 QNI-MDDQSTLRIQGKG--DKIRIVP--LLPSVRKAILEYYDLCPFDLNL---NIQLP-- 228 +++ + L +GKG D++ ++P L+ + + + L DL+ ++ LP Sbjct: 164 KDVDFARREILVREGKGFKDRVTMLPEKLMAPLGEHLARVKALHAADLSAGFGDVYLPWA 223 Query: 229 ----------------LFRGIRGKPLNP--GV----------FQRYIRQLRRYLGLPLST 260 +F R +P++P G QR + Q R G+ Sbjct: 224 LERKYPNAAREWAWQYVFVAAR-RPVDPRSGAVRRHHVEAQSIQRAMHQALRVAGVSKPA 282 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSIL-GHFRLSTTQIYTNVNSKNG 306 T HTLRHSFAT LL G D+R++Q +L GH +STT IYT+V + G Sbjct: 283 TPHTLRHSFATSLLETGYDIRTVQELLVGHSDVSTTMIYTHVLKRGG 329 >gi|89147414|gb|ABD62567.1| integrase [uncultured bacterium] Length = 163 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 36/64 (56%), Positives = 45/64 (70%) Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 LN QR +++ R GL T HTLRHSFATHLL NG D+R++Q +LGH +STTQI Sbjct: 99 LNETTMQRVMKEAVRTAGLTKPATCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTQI 158 Query: 298 YTNV 301 YT+V Sbjct: 159 YTHV 162 >gi|291557595|emb|CBL34712.1| Site-specific recombinase XerD [Eubacterium siraeum V10Sc8a] Length = 282 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 71/286 (24%), Positives = 130/286 (45%), Gaps = 32/286 (11%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 ++N +R L + T+Q Y D FL ++ + + L+ + +F++ +R + Sbjct: 9 IRNEAEKRNLRERTIQLYCSDVSYFLRWIG---------KNVSDLTLEDAESFLTAKRLE 59 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 + S IK FL Y K KI + + + +K+ +LP L+ + ++D Sbjct: 60 GRSPETHNHYRSAIK-FL-YKKVLKILWDDDTVPA--MKRERNLPVVLSRDEINAIIDAT 115 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV 200 + ++ AI+ +Y GLR+SE + L +I T+ + + KG R Sbjct: 116 ----------PNLKHKAIIATMYSSGLRVSEVVHLHYDDISRTNMTIHVRETKGRIDRYT 165 Query: 201 PLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 L + EY+ C P D I P G L+ ++ ++ + G+ Sbjct: 166 ILSQKNLDLLTEYWYKCGRPKD----ILFP--SSWSGGYLDIASVNQFFKKSAKLAGINR 219 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 ++H RHSFA+HL +G D++ IQS+LGH +T +Y +V++K Sbjct: 220 HVSSHACRHSFASHLFESGTDIKYIQSLLGHVDPRSTDVYLHVSNK 265 >gi|297617958|ref|YP_003703117.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680] gi|297145795|gb|ADI02552.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680] Length = 280 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 68/272 (25%), Positives = 130/272 (47%), Gaps = 16/272 (5%) Query: 31 LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90 L++ T ++Y D F + A E + + + E ++ + R K ++ R Sbjct: 10 LNRGTARAYREDLLDFSRWFAETNGESLEPHLVTSIDLKEYQSHMILNRGLKPA--TVNR 67 Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150 ++ I++++++ +++ + R + ++ P+AL++++ + V K Sbjct: 68 RMAAIRAWMRWCQEQGLIENLPRWPKRAAQVQHA-PKALSKREQERFLRAV-------EK 119 Query: 151 WIDARNSAILYLLYGCGLRISEA--LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 + R+ A++ L+ GLR+ EA + ++ +I D + + I GKG K R VPL R Sbjct: 120 EGNRRDVALIGLMLFAGLRVGEAARVRVSDVSISDRKGKVSITGKGMKHREVPLGFDARN 179 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRH 267 + ++ + Q LF G G ++ Q I++ + P T H LRH Sbjct: 180 MVRDWLN---HQAQHAQQEWLFPGQNGGHISARAVQHMIKKYAWQARIEPQKITPHVLRH 236 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 +FAT+LL +G DL ++ ++LGH RL TT YT Sbjct: 237 TFATNLLRDGVDLVTVAALLGHSRLDTTARYT 268 >gi|163855761|ref|YP_001630059.1| putative integrase/recombinase [Bordetella petrii DSM 12804] gi|163259489|emb|CAP41789.1| putative integrase/recombinase [Bordetella petrii] Length = 317 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 78/282 (27%), Positives = 129/282 (45%), Gaps = 24/282 (8%) Query: 36 LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI---SKRRTQKIGDRSLKRSL 92 + SY L F+ KI I L + +I+AF+ + R + R+ + L Sbjct: 1 MASYRDTFSILLRFMEHQAGVKIERICIADLHHKQIQAFLLWLEQDRGNSVNTRN--QRL 58 Query: 93 SGIKSFLKYLKK---RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 S I SF +++ I ILN++ K+ +S L+ + +LL + Sbjct: 59 SAITSFFRFVMSIYPEHILLCQQILNIQFKKRQSSTVDYLSIEAV-----ELLLQQPNAR 113 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRK 208 K + R+ +L +LY G R+ E ++ ++ + +T R+ GKG K+R+VPLL Sbjct: 114 KPMGRRDLVLLSVLYDTGARVQELANMNVSDLKLTAPATARLLGKGAKVRLVPLLAPTTA 173 Query: 209 AILEYYDLCPFDLNLNIQLPLF-RGIRGKPLNPGV---FQRYIRQLRR----YLGLPLST 260 ++ Y PLF +R + G+ Q+Y R++ + LG +S Sbjct: 174 LLVSYLQEHHGQYLEQKDRPLFCNNVRKRLTRAGISYILQKYAREVSQGNPGLLGTKIS- 232 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 HTLRHS A HLL G +L I+ +LGH + TT+IY + Sbjct: 233 -PHTLRHSKAMHLLQAGVNLIYIRDLLGHSDIKTTEIYARAD 273 >gi|290243122|ref|YP_003494792.1| integrase family protein [Thioalkalivibrio sp. K90mix] gi|288945627|gb|ADC73325.1| integrase family protein [Thioalkalivibrio sp. K90mix] Length = 322 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 92/174 (52%), Gaps = 7/174 (4%) Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 RA+ E + +D H + I R++A++ +LY G+R SE + L +++ ++ Sbjct: 131 RAVAEDE----MDCFTQHLERDRTPIGIRDAALVNVLYSTGMRRSEVVDLRIGDLVPEEK 186 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG--IRGKPLNPGVFQ 244 + I+GKG++ R + A+ + D + + + LP+ RG I+ + ++ Sbjct: 187 AVLIRGKGNRERTGYMDDVAWDALNHWIDEVRGERDGPLFLPMARGGHIQWRRMSDQAVA 246 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + +R+ +P T H +R SFAT LL NG DL ++Q ++GH ++TTQIY Sbjct: 247 KVVRERSMEAAMP-PTLPHDMRRSFATQLLDNGTDLLTVQRLMGHSSVTTTQIY 299 >gi|254422709|ref|ZP_05036427.1| integron integrase subfamily [Synechococcus sp. PCC 7335] gi|196190198|gb|EDX85162.1| integron integrase subfamily [Synechococcus sp. PCC 7335] Length = 302 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 54/285 (18%) Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK-SFLKYLKKRKITTE-SNILNMRN 118 Q +++ +EIRA++S T R + S + S L +L ++ + E I N+ Sbjct: 21 QHPKKMGASEIRAYLSHLATV----RHVAASTQTVALSALLFLYRQVLGIELPYIDNIER 76 Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178 K+ LP + + ++ N +D N ++ LLYG G+R+ E L L Sbjct: 77 AKRPQRLPVVFTRSEVMRILAN-----------LDGINHLVVSLLYGTGMRLMEGLRLRV 125 Query: 179 QNIMDDQSTLRIQ-GKGDKIR--------IVPLLPSVRKA-ILEYYDLC--------PFD 220 ++I + + ++ GKG K R I PL ++KA L DL P+ Sbjct: 126 KDIDFEYRHITVRDGKGKKDRHTLLPESVIQPLQHQLKKAKHLHEQDLAVGYGTVELPYA 185 Query: 221 LNLNIQL-------------------PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 L P + +R L QR +++ + + + Sbjct: 186 LARKYPSAHKEWKWQFVFPSGKRSLDPRSKVVRRHHLYEQSVQRAVKKAIQKAEITKNGG 245 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 HTLRHSFATHLL +G D+R++Q +LGH + TT IYT+V +K G Sbjct: 246 CHTLRHSFATHLLEDGYDIRTVQELLGHKDVKTTMIYTHVLNKGG 290 >gi|313607900|gb|EFR84054.1| tyrosine recombinase XerD [Listeria monocytogenes FSL F2-208] Length = 75 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 37/77 (48%), Positives = 50/77 (64%), Gaps = 4/77 (5%) Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 F + ++ + + G+ T HTLRHSFATHLL NG DLRS+Q +LGH +STTQIYT+V Sbjct: 1 FWKILKGIAKESGIEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVT 60 Query: 303 SKNGGDWMMEIYDQTHP 319 + ++Y Q HP Sbjct: 61 KLR----LKDVYKQFHP 73 >gi|315924314|ref|ZP_07920537.1| tyrosine recombinase XerC [Pseudoramibacter alactolyticus ATCC 23263] gi|315622385|gb|EFV02343.1| tyrosine recombinase XerC [Pseudoramibacter alactolyticus ATCC 23263] Length = 355 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 74/260 (28%), Positives = 127/260 (48%), Gaps = 42/260 (16%) Query: 69 TEIRAFISKRRTQKI-GDRSLKRSLSGIKSFLKYLK---KRKITTESNILNMRNLKKSNS 124 +I AF+ Q+ G+ + KR + I++ YL + ++ + L + +K+ + Sbjct: 99 ADIYAFLGYASVQRGNGNTTRKRKTAAIRALYHYLTVVLQLDMSDPTQNLEVPKIKQRDP 158 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNS----AILYLLYGCGLRISEALSLTPQN 180 + L+E A++L++ ID RN AI+ L CG+R+SE +L ++ Sbjct: 159 IYLTLDE--AMSLLN-----------AIDGRNKERDLAIVTLFLNCGMRLSELTNLRLKD 205 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL---------CPFDLNLNIQLPLFR 231 I D+ TL I GKG+K R V L + A+ YY + D + + LF Sbjct: 206 IQDE--TLHIVGKGNKERDVILNDACVNALEAYYPIRKQQIERIEAQSDKVVKVDDHLFL 263 Query: 232 GIRGKPLN----PGVFQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGG-DLRSIQS 285 RG+ ++ G+ +YI + GL + T H LRH+ AT + G D+R++Q Sbjct: 264 SSRGRGISNRMVEGMVHKYILKA----GLDANKITVHKLRHTAATLMYKYGQVDIRTLQK 319 Query: 286 ILGHFRLSTTQIYTNVNSKN 305 +LGH +STT+IYT++ + Sbjct: 320 VLGHENVSTTEIYTHIEDDD 339 >gi|312869134|ref|ZP_07729308.1| phage integrase, N-terminal SAM domain protein [Lactobacillus oris PB013-T2-3] gi|311095380|gb|EFQ53650.1| phage integrase, N-terminal SAM domain protein [Lactobacillus oris PB013-T2-3] Length = 295 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 75/303 (24%), Positives = 132/303 (43%), Gaps = 15/303 (4%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +L L+ +G S TL SY D Q FL K + + ++ A I++++ Sbjct: 7 KYLAYLKGSQGRSANTLMSYRRDLDQAAAFLQAQGVGKWSA-----VDQYQLLALIAEQK 61 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNEKQALTLV 138 + ++ R LS ++ F +YL + + + + + N + + LP L E + Sbjct: 62 KRGRSPATINRQLSALRQFYRYLVRHQQLRFNPMELVDNQQLTEKLPPEILTEPEI---- 117 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL + + R+ A+L +L G+R+SE + L ++ D +R+ G + R Sbjct: 118 -KQLLAAPDQAHALGKRDRALLAVLATTGMRVSELVDLLVTDLHLDIKMIRLGSGGRRER 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +VP+ + + +Y L + +F G L + +R L R G+ Sbjct: 177 LVPISDQAVQELKQYLAAVRPLLVAEGEQAVFVNAHGHQLTRQGVWKNLRTLVRQAGIEK 236 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + T TLR+SFA HLL +G D R IQ +LG+ L + Y + + + Y Q Sbjct: 237 AVTPRTLRYSFAVHLLRSGADGRLIQEMLGYSELRAIKPYLKMTVQE----LSADYRQHQ 292 Query: 319 PSI 321 P I Sbjct: 293 PKI 295 >gi|198277427|ref|ZP_03209958.1| hypothetical protein BACPLE_03641 [Bacteroides plebeius DSM 17135] gi|198269925|gb|EDY94195.1| hypothetical protein BACPLE_03641 [Bacteroides plebeius DSM 17135] Length = 293 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 72/307 (23%), Positives = 148/307 (48%), Gaps = 23/307 (7%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 + ++L+ L +ER S+ T+ SY D +F + EE + +R ++ Sbjct: 3 KDSFLKYLLLERNYSEKTILSYGIDLDEFEAYFKSVDEEF----EFTSVDADVVRGWVLS 58 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 + + ++ R LS ++SF YL ++K+ + + KK LP + ++ L Sbjct: 59 LMDEGRAETTVNRKLSSLRSFYHYLLRQKLVAVDPVAKVVGPKKKKPLPVFVRDEAMNQL 118 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 +D + E R+ A+L + Y G+R +E ++L +++ +++ GK +K Sbjct: 119 LDGFEFPQTFEG----VRDKAMLEVFYSTGMRRAELITLRDEDVDFSALVIKVTGKRNKQ 174 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR--GIRGKPLNPGVFQRYIRQLRRYLG 255 R++P +++ + Y + + R G+R P + YI ++RYL Sbjct: 175 RLIPFGDRLQEVLSAYLQERARFYSGECEAFFIRKSGVRLSPSSVN----YI--VKRYLS 228 Query: 256 LPLS---TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 ++ + H LRH+FAT +L++ +L +++ +LGH L+TT++YT+ + + + Sbjct: 229 KVVTLKKKSPHVLRHTFATSMLNHQAELEAVKELLGHESLTTTEVYTHTTFEE----LKQ 284 Query: 313 IYDQTHP 319 +Y+Q HP Sbjct: 285 VYEQAHP 291 >gi|303242647|ref|ZP_07329121.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302589786|gb|EFL59560.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 340 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 74/298 (24%), Positives = 138/298 (46%), Gaps = 26/298 (8%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFY------TEEKITIQTIRQLSYTEIRAFIS 76 Q + ERG S ++ SY F+++L + + E+I + + + T ++ Sbjct: 16 QYMPNERGNSPQSIDSYRY---AFILYLEYMESVKKISAERIVLSDFTRETVTGYLNWLG 72 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKR---KITTESNILNMRNLKKSNSLPRALNEKQ 133 R R+ + L+ +K F+ YLK + IL + LKK+ + + Sbjct: 73 ASRENSPSTRN--QRLAALKGFVHYLKYEFPDYLDEYQRILGI-PLKKTQRKEISYMKTD 129 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQG 192 + L+ + T W + IL +LY G+R++E +++ ++I + + T+RI G Sbjct: 130 GVNLLVEQIDVTRTNGLW----DYVILLILYTTGIRVTELINVRVKDISLTEPYTIRIHG 185 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG----VFQRYIR 248 KG+K R VPL+ + I Y + + + LF+ P V ++Y Sbjct: 186 KGNKGRYVPLMRTAVPHIKRYLETMGYANEARYEETLFKNHMKTPFTRQGINYVLKKYGI 245 Query: 249 QLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + +R +P +AH +RH+ A L+++G DL I+ +LGH + TT+IY ++K Sbjct: 246 KAKRINSELIPNDLSAHKMRHTMAMELVTSGVDLMYIRDLLGHSSVVTTEIYARTDAK 303 >gi|13475204|ref|NP_106768.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|14025955|dbj|BAB52554.1| integrase/recombinase [Mesorhizobium loti MAFF303099] Length = 342 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 82/307 (26%), Positives = 134/307 (43%), Gaps = 43/307 (14%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE------EKITIQTIRQLSYTEIR 72 Q +L L RG+S+ T++SY ++FL F T E +TI I Sbjct: 18 QEYLPTL---RGMSRHTIRSYRDG---MILFLGFATTDCRRPIESLTIADITADRVGRFL 71 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYL---KKRKITTESNILNMRNLKKSNSLPRAL 129 A + R I R+ + L+ + +F ++L + T +L + + + P Sbjct: 72 ASLESERGNSIATRNTR--LAALHTFARFLIAETPEHMATLQQVLGIPFKRGARVAP--- 126 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTL 188 E T V+ +L +T R+ A+ L++ G R+ E + L +++ ++ + Sbjct: 127 IEYLETTEVEALLAGIDRKTP-AGRRDYAMFSLMFNTGARVQEVIDLRVRDVRLEPPHQV 185 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNP-GV 242 R GKG+KIR+ P+ P + + E D P D ++ F RG P+ GV Sbjct: 186 RFTGKGNKIRLCPIWPRTAQLLKELIQKQTNDEDPADQHI------FLNGRGAPMTRFGV 239 Query: 243 FQRYIRQLRRYLGLPLSTT-------AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 RY+ Q R G ++ T H+LRH+ A HLL G D +I LGH L+TT Sbjct: 240 --RYLLQKRVAAGAEVAPTLSDKRIHPHSLRHTTAIHLLKAGVDFVTISQWLGHASLNTT 297 Query: 296 QIYTNVN 302 Y + Sbjct: 298 MRYARAD 304 >gi|16519919|ref|NP_444039.1| DNA integration/recombination/inversion protein [Sinorhizobium fredii NGR234] gi|2497418|sp|P55634|Y4RA_RHISN RecName: Full=Putative integrase/recombinase y4rA gi|2182598|gb|AAB92467.1| DNA integration/recombination/inversion protein [Sinorhizobium fredii NGR234] Length = 409 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 78/289 (26%), Positives = 136/289 (47%), Gaps = 19/289 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q + ++L R LS+ T+ +Y R FL F + + +I++ +R T+ F+ K+ Sbjct: 119 QAYERHLRDARALSRQTIINYRPVVRDFLSFR--FGDGEISLAQLRAADVTD---FVQKK 173 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTE--SNILNMRNLKKSNSLPRALNEKQAL 135 ++ R K + ++SFL Y + R IT++ + + + N S S+PRA+ Sbjct: 174 -VSRLNMRRAKIVTTALRSFLSYARYRGDITSDLAAAVPIVANWSLS-SIPRAIGRDDVS 231 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L+ ++ T I R+ A++ L GLR SE ++L +I +R++GK Sbjct: 232 RLLSSIDRDTP-----IGCRDYAMILALARLGLRSSEVVTLELDDIDWVAGRIRVRGKHG 286 Query: 196 KIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 + + PL V +AI +Y + P + + + L IRG + P +R+ + Sbjct: 287 RNEL-PLPADVGEAIADYLWRARPRNASRRVFLRDKAPIRGF-VGPSGLGSIVRRSLKRT 344 Query: 255 GLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 G+ T H RH A+ +L G L I +LGH + TT IY V+ Sbjct: 345 GIDSPTKGTHQFRHGLASEMLRGGASLGEIGEVLGHRHVQTTAIYAKVD 393 >gi|322376586|ref|ZP_08051079.1| putative integrase/recombinase XerD [Streptococcus sp. M334] gi|321282393|gb|EFX59400.1| putative integrase/recombinase XerD [Streptococcus sp. M334] Length = 280 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 76/277 (27%), Positives = 127/277 (45%), Gaps = 24/277 (8%) Query: 31 LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90 +S T+++Y+ D QF Y + + + ++I I +L+R Sbjct: 1 MSSHTIRAYKNDLMQF------YNSD-----------HDNVESYIEHLTQSSIKTNTLRR 43 Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSN-----SLPRALNEKQALTLVDNVLLHT 145 ++ +K F YLK + I E+ +R ++ ++P + + + L V++ Sbjct: 44 KIACMKVFYNYLKYQNIIEENPFNQLRFQFRTEKILPKTIPHDILKSIFIYLEQKVIVSK 103 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 + K RN I+ LL G+RISE + ++I TL I GKG K RI+ L Sbjct: 104 TDYQKQHAERNLLIISLLLSTGIRISELCHIHLKDINLSNKTLHIIGKGKKERILFLGDQ 163 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 +LE Y + + + P + KPL+ + I+++ + T H Sbjct: 164 KTFNLLETYINKTRNESNDFLFPGKHSL--KPLSEQSVRLVIKRIVEQNNFSRTITPHMF 221 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 RHSFAT LL + D+R IQ +LGH +S TQIYT+V+ Sbjct: 222 RHSFATMLLDSDVDIRYIQQMLGHSSISITQIYTHVS 258 >gi|88856877|ref|ZP_01131529.1| phage-related integrase [marine actinobacterium PHSC20C1] gi|88813845|gb|EAR23715.1| phage-related integrase [marine actinobacterium PHSC20C1] Length = 333 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 80/300 (26%), Positives = 130/300 (43%), Gaps = 34/300 (11%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA------- 73 +L+ L +RG S T++SY D + L F EK T + L ++ A Sbjct: 16 FLRRLVDQRGASARTIESYR-DAFELL----FSYIEKRTGTSPSTLQMADLDAPLVLDFF 70 Query: 74 -FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR---KITTESNILNMRNLKKSNSLPRAL 129 ++ R R+++ L+ I SF++Y R + S +L + + + L Sbjct: 71 DYLETERHNSARTRNVR--LAAIHSFMRYAAVRDPASLPITSRVLAIGAKRFDRPVLGYL 128 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-QSTL 188 + +Q +L W R++ +L Y G R+SE +L +I+ D QS + Sbjct: 129 SREQI-----TAILAAPDRNTWSGRRDAVMLATTYNTGARVSEITALRVSDILADRQSAV 183 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-PGVFQRYI 247 + GKG K R++PL + + + +N P+F G P++ GV R Sbjct: 184 HLHGKGRKQRVIPLWKNTASDLRSWLG----RINTAPDAPVFPNKAGAPMSRSGVRDRLD 239 Query: 248 RQLR-RYLGLP----LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 R + G P + HTLRH+ A HLL +G DL +I LGH +TTQ Y + Sbjct: 240 RAVAIAEQGCPSLRGQHISPHTLRHATAMHLLQSGTDLATIALWLGHSSPATTQQYLEAD 299 >gi|229186070|ref|ZP_04313240.1| Tyrosine recombinase xerC [Bacillus cereus BGSC 6E1] gi|228597489|gb|EEK55139.1| Tyrosine recombinase xerC [Bacillus cereus BGSC 6E1] Length = 130 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 7/131 (5%) Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIR 248 GKG K R +P + A++ Y + L + +F +G PL + + Sbjct: 2 GKGKKQRYIPFGSYAQDALITYIENGRKQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLN 61 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 +L + L + + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ + Sbjct: 62 ELIKKASLTMRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSK----E 117 Query: 309 WMMEIYDQTHP 319 + +Y + HP Sbjct: 118 RLRSVYMKHHP 128 >gi|331007978|ref|ZP_08331026.1| Integron integrase IntI4 [gamma proteobacterium IMCC1989] gi|330418212|gb|EGG92830.1| Integron integrase IntI4 [gamma proteobacterium IMCC1989] Length = 323 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 83/287 (28%), Positives = 121/287 (42%), Gaps = 67/287 (23%) Query: 71 IRAFI---SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI---TTESNILNMRNLKKSNS 124 I+AFI KR ++GD R FL YL + +T+ LN + Sbjct: 31 IKAFIHFHDKRHPSELGDADAAR-------FLTYLAVERTVSSSTQRTALNALAFLYNRF 83 Query: 125 LPRAL--------NEKQA-LTLV---DNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172 L + L +++QA L +V + V + SH ID + + LLYG GLR E Sbjct: 84 LEKPLGSMAEFTRSKRQAKLPIVLSREEVKVLFSH----IDPKYKLAVGLLYGSGLRRIE 139 Query: 173 ALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI--------------LEYYDLC 217 L L ++ +RI GKG K R+ L P + AI + Y + C Sbjct: 140 CLRLRVNDVDFSHLQIRIWNGKGFKHRLTTLAPELIPAIKCQIERANAFLQEDITYPEYC 199 Query: 218 PF---------------DLNLNIQLPLFR--------GIRGKPLNPGVFQRYIRQLRRYL 254 +L P +R IR ++ + I R+ Sbjct: 200 GVWLPDALARKYRNASKELGWQYLFPSYRLSIEPGTSNIRRHHMDESTLNKVIASARKRA 259 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 L ++HTLRHSFATHLL +G D+R++Q LGH + TT+IYT+V Sbjct: 260 KLGKPVSSHTLRHSFATHLLQSGADIRTVQQQLGHSDVKTTEIYTHV 306 >gi|159901727|ref|YP_001547973.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779] gi|159894766|gb|ABX07845.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779] Length = 326 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 85/315 (26%), Positives = 135/315 (42%), Gaps = 37/315 (11%) Query: 7 PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66 PE E L +R W N + L+ T Y R+ + A + + + + Sbjct: 4 PESEPIESLIDR--WWTNPGDD--LTAATRTRYRSALRRLCRWFAAAERRSLLLADLHPI 59 Query: 67 SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN-SL 125 S R + Q ++ LS I+++ +L + + ++ +K++ S Sbjct: 60 SLAGYREALK----QTDAASTVNTHLSAIRTWCVWLVDQGYLATNPAQRLKLVKRTTPSA 115 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 P+AL+ N LL + T++ RN+AIL +L G+RISE +L +I + Sbjct: 116 PKALSPAHV-----NALLRQAQFTRY-PLRNTAILQVLIQTGMRISECAALCWHDIQYGE 169 Query: 186 ST---LRIQGKGDKIRIVPLLPSVRKAILEYYD--------------LCPFDLNLNIQLP 228 + L GKG+ +R VPL S R A+ Y P + + P Sbjct: 170 RSGHALIRAGKGNTVRTVPLNESARCALASYVAPLLGVQPSLHKVARAWPQRQEGDPRCP 229 Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLG----LPLSTTAHTLRHSFATHLLS-NGGDLRSI 283 L+ R L+ I QL R LP STT H+LRH+FAT L+ + DL + Sbjct: 230 LWTSERQHALSLREMSHMIHQLVRDTSARKLLPASTTPHSLRHTFATRYLARHPHDLVGL 289 Query: 284 QSILGHFRLSTTQIY 298 +LGH ++TTQIY Sbjct: 290 ARLLGHRSITTTQIY 304 >gi|294340300|emb|CAZ88677.1| putative Phage integrase [Thiomonas sp. 3As] Length = 334 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 73/291 (25%), Positives = 136/291 (46%), Gaps = 30/291 (10%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI----QTIRQLSYTEIRAFISKRRTQKI 83 +R LS T+ SY R + L + E+K+ + T+ LS + F+ Q+ Sbjct: 24 QRALSPRTVASY----RDTFVLLLRFAEDKLRLPAHGMTMTDLSARFLADFLDHLEAQRH 79 Query: 84 GD-RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN-- 140 RS L+ +++FLK+ +R + N+ ++ + ++P E++ + V + Sbjct: 80 NCVRSRNVRLAAVRAFLKFAARR------DPANLGVIENALAVPMKRFERRMVGFVPHEQ 133 Query: 141 --VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKI 197 ++ + +T WI R+ +L L++ G R+SE + + ++ + +++R+ GKG K Sbjct: 134 MLAVIDVASDT-WIGQRDRLMLTLMFNTGARVSEIIGVHVADVVLGPSNSIRLHGKGRKQ 192 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-PGVFQRY-----IRQLR 251 R +PL S +A+ ++ L P L + PL G+ + V QR + ++ Sbjct: 193 RSLPLWKSSARAVRDWLHLNP---QLGQESPLLPTRDGRAMTRANVAQRLKLAVKVASVK 249 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 +S + H +RHS A LL +G D I LGH STT +Y + Sbjct: 250 HAQLKTMSVSPHIVRHSTAMSLLQSGVDPCEIALWLGHESPSTTHMYVEAD 300 >gi|310765754|gb|ADP10704.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 345 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 66/252 (26%), Positives = 122/252 (48%), Gaps = 18/252 (7%) Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLVD 139 + + R+ + +L ++ + ++L K+ + + ++ + LPR L+ +Q +V+ Sbjct: 98 EPLSPRTQRTALQPLQVWFRWLAKQNLILANPAADLELPRLEKHLPRTILSVEQVEDIVN 157 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR 198 L+T R+ A+L LL+ G+R E L + + L I QGKG + R Sbjct: 158 RCDLNTLQ-----GMRDRALLELLWSTGIRRGEVARLESWSADFSRKILTIVQGKGKQDR 212 Query: 199 IVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLF---RGIRGKPLNPGVFQRYIRQLRRYL 254 ++P+ + Y +++ P + + LF G+ G N G+ + LR Sbjct: 213 VIPVGERALWWLRHYLHEVRPEIVAVAGCKALFVAMDGVAGLTAN-GITHAVVPYLR-AA 270 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ + H RH+ AT +L NG DLR IQ++LGH + +TQIYT V+ + + ++ Sbjct: 271 GIE-KGSCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIRA----LQAVH 325 Query: 315 DQTHPSITQKDK 326 THP+ +D+ Sbjct: 326 ASTHPAEQTEDE 337 >gi|307826955|ref|ZP_07656735.1| integrase family protein [Methylobacter tundripaludum SV96] gi|307732373|gb|EFO03296.1| integrase family protein [Methylobacter tundripaludum SV96] Length = 277 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 104/224 (46%), Gaps = 30/224 (13%) Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL---VDNVLLHTSH 147 SL+ + LK+L + + + M + + LP L+ ++ L VDN+ H Sbjct: 71 SLNATLTGLKFLFETTLDRPELLTKMHPVHVPHKLPVVLSREEVARLIAAVDNL----KH 126 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206 +T L + YG GLR SE +SL +I + TLRI QGKG K R L P + Sbjct: 127 QTA---------LSVAYGAGLRASEVVSLKVGDIDSQRMTLRIEQGKGSKDRYAMLSPVL 177 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS------- 259 + + ++ + LF G+ P++P RQL R + Sbjct: 178 LERLRAWWKFAHAQGKMLQGGWLFPGL--DPIDP----LSTRQLNRAIHAAAEAARIDKR 231 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + HTLRHSFATHLL D+R IQ +LGH +L TT +Y V + Sbjct: 232 VSMHTLRHSFATHLLEQKVDIRVIQVLLGHKKLETTALYAQVAT 275 >gi|299538027|ref|ZP_07051313.1| hypothetical protein BFZC1_18515 [Lysinibacillus fusiformis ZC1] gi|298726609|gb|EFI67198.1| hypothetical protein BFZC1_18515 [Lysinibacillus fusiformis ZC1] Length = 278 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 76/267 (28%), Positives = 124/267 (46%), Gaps = 32/267 (11%) Query: 56 EKITIQTI--RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI 113 E IT +I ++++ +IR ++ + ++ + L G++ F KY + ++ + + Sbjct: 32 EMITYCSIPFQEITTRDIRKWLCHLEEKGRAPATISKKLFGLRLFYKYCLEEQLIAHNPV 91 Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173 +R + ++ +P L Q L L ET + R AI+ +LY G+R+SE Sbjct: 92 KAIRLPEINDRMPHYLLPNQLLLLQRMT------ET---NKRERAIVEVLYTTGVRLSEL 142 Query: 174 LSLTPQNIMDDQSTLRI-QGKGDKIRIV---PLLPSVRKAILEYYDL-CPFDLNLNIQLP 228 +++ ++I + + I +GKG K RIV + +A L+ D CP+ Sbjct: 143 VAIQLKDIDWSERLIHIRKGKGKKARIVLFTRMCAEYLQAYLQERDSSCPY--------- 193 Query: 229 LFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 LF +RG KPL Q LG+P S HTLRH+FA HL G L IQ++L Sbjct: 194 LFLNMRGTKPLGVRGIQHKFSDYSEELGIPFS--PHTLRHTFAAHLAMKGMSLDCIQTLL 251 Query: 288 GHFRLSTTQIYT----NVNSKNGGDWM 310 GH TQIY + + WM Sbjct: 252 GHEDPHQTQIYARLYNHARKEQYDQWM 278 >gi|149377412|ref|ZP_01895156.1| integrase/recombinase (XerC/CodV family) protein [Marinobacter algicola DG893] gi|149358336|gb|EDM46814.1| integrase/recombinase (XerC/CodV family) protein [Marinobacter algicola DG893] Length = 330 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 86/317 (27%), Positives = 136/317 (42%), Gaps = 63/317 (19%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 RGL+ T ++Y R+F+ F E + ++ AF+S Q + Sbjct: 27 RGLAYATEKTYVFWIRRFIRFHGRKHPET--------MGSADVEAFLSHLVLQANASVAT 78 Query: 89 KR-SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 +R +L+ L +L + + + LN +K LP + ++A T ++N Sbjct: 79 QRVALNA----LIFLYREFMGIPLDNLNYEAARKPAKLPTVFSPEEAKTTINN------- 127 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPS- 205 ++ I L+YG GLRI+E L L +++ L ++ GKG+K RI LLPS Sbjct: 128 ----LEGEYRLIAMLIYGSGLRINEVLRLRVKDVDFGMQQLVVRSGKGNKDRIT-LLPSS 182 Query: 206 --------VRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPG---VF---------- 243 + A+ ++ DL ++ + L R PG VF Sbjct: 183 LIQSLTRQIEAALHQHSSDLAKGYGSVYLPAGLARKYPNASQEPGWQYVFPAAELSVDPR 242 Query: 244 --------------QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289 Q+ R R G+ +HT RHSFAT LL +G D+R+IQ +LGH Sbjct: 243 SGIRRRHHMIDRTVQKNFRIAIRSAGIRKPANSHTFRHSFATRLLESGYDIRTIQKLLGH 302 Query: 290 FRLSTTQIYTNVNSKNG 306 + TT+IYT+V K G Sbjct: 303 ADVRTTEIYTHVVRKGG 319 >gi|289579058|ref|YP_003477685.1| integrase [Thermoanaerobacter italicus Ab9] gi|289528771|gb|ADD03123.1| integrase family protein [Thermoanaerobacter italicus Ab9] Length = 291 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 75/276 (27%), Positives = 129/276 (46%), Gaps = 25/276 (9%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87 + G S T++SY D +FL + ++ + + Q E R ++ K+ S Sbjct: 13 QSGKSTNTVESYISDINEFLRWFGDTYGKEFDGRILEQ-DAREYRNYLLN--IIKLKPSS 69 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 + R ++ +K+F ++L + TE+NI + + R ++ + L V Sbjct: 70 INRKMAALKNFNQFLIQTGTGTEANICGISVADIHDREIRTISRNELNRLKRAVYASG-- 127 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-------DDQSTLRIQ-GKGDKIRI 199 + R+ A++ LL G G+R+SE +SLT Q+I + S + I+ GKG K R Sbjct: 128 -----NKRDIALIELLIGTGVRVSELVSLTIQDIHLTERNGSQNYSYIVIRNGKGGKYRE 182 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 +PL V+KA+ EY + P + +F G RG PL + I++ R G+ Sbjct: 183 IPLNSQVKKALEEYLAIRPSSSD-----RIFIGQRG-PLRRESVDKIIKKYCRISGIE-E 235 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 +AH LRH+F T L+ G + + + GH + TT Sbjct: 236 ISAHVLRHTFCTRLVQEGTPIPVVSKLAGHSNVQTT 271 >gi|325001053|ref|ZP_08122165.1| integrase family protein [Pseudonocardia sp. P1] Length = 297 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 74/271 (27%), Positives = 112/271 (41%), Gaps = 18/271 (6%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 S T ++Y D R F + A + + + ++ + Y A R + ++ R Sbjct: 14 SANTRRAYTRDIRDFHTWCAQHGLDLLEVRRVHIDGYIAALATPQPRTGRPAAPATVARK 73 Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 LS + Y S + + PR ++ Q L + L Sbjct: 74 LSALAGLYDYAAAEGYLPGSPLTRVER-------PRVGDDSQTTGLDRDELRRLLAAAAA 126 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKA 209 R+ A++ LL GLRI+EALS +++ ++ LR++ KG + VPL V A Sbjct: 127 DGTRSHALMLLLAHNGLRINEALSRDVEHLDTERGHQVLRLRRKGGRGATVPLSAPVAHA 186 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST--TAHTLRH 267 I Y D P P+F G+ L+ R IR+L RY LP + HTLRH Sbjct: 187 IATYLDGRPTG-------PIFITRTGRRLDEPAAWRLIRRLARYAELPQADRINPHTLRH 239 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 +F T L G LR +Q GH TT+ Y Sbjct: 240 AFVTAALDAGVSLRDVQDGAGHSDPRTTRRY 270 >gi|218442243|ref|YP_002380571.1| integrase [Cyanothece sp. PCC 7424] gi|218175384|gb|ACK74114.1| integrase family protein [Cyanothece sp. PCC 7424] Length = 289 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 73/273 (26%), Positives = 127/273 (46%), Gaps = 31/273 (11%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 G S T+ SY R+FL F+ + + + T+ L RA ++ + S Sbjct: 29 GHSPHTVDSYRRSARRFLDFV----NKPLHLVTLADLQL--WRASLTH-----LAPSSQG 77 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-PRALNEKQALTLVDNVLLHTSHE 148 +++ IKS L + + + + + +++ K ++L R LNE++ +T++ N Sbjct: 78 TAMAAIKSLLSFGHQIGVLPTNVGIALKSPKVKDTLNERILNEEEVMTMIANE------- 130 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSV 206 D RN +L LLY GLR+SE +L +++ + + + GKG K R V LLPS Sbjct: 131 ---PDERNRVLLRLLYAGGLRVSELCALKWKDLKSRNQSGQVTVFGKGGKTRTV-LLPSG 186 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + +LC P+F + G L+ R ++ G+ + + H L Sbjct: 187 -----VWQELCQIRGKSRGADPVFPSRMGGGHLDRTQVYRIVKAAASRAGIEGNVSPHWL 241 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 RH+ A+H L G L +Q+ LGH ++TT+ Y Sbjct: 242 RHAHASHSLDRGAPLHLVQATLGHSSVATTERY 274 >gi|170728630|ref|YP_001762656.1| integron integrase [Shewanella woodyi ATCC 51908] gi|169813977|gb|ACA88561.1| integron integrase [Shewanella woodyi ATCC 51908] Length = 319 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 82/310 (26%), Positives = 136/310 (43%), Gaps = 60/310 (19%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRS 87 RG S T ++Y +++++F K +T LS ++++F++ TQ + + Sbjct: 18 RGYSLRTEKAYLYWIKRYILF-----HNKAHPET---LSADDVKSFLTWLATTQNVAVNT 69 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 K +L+ L +L + + E L K +LP L+ K+ ++ N Sbjct: 70 QKVALNS----LVFLYHQYLKIELGDLGFTLATKQRTLPTVLSPKEIAQILSN------- 118 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206 ++ ++ +LYG G+R++E L L Q+I + +L I+ GKG+K R L S Sbjct: 119 ----MNGTAKFVIEMLYGSGMRVNECLRLRVQDINIENLSLTIRDGKGNKDRQTLLSRSC 174 Query: 207 RKAILEYYDLC----------------PFDLNLN----IQLPLF------RGIRGKPLN- 239 + Y D P+ L Q P + I P+ Sbjct: 175 SHLLTAYIDSAIELQSSDNENGFGPSLPYSLGKKYPKAFQQPAWMFVFPSNNISEHPVTK 234 Query: 240 -PGVFQRYIRQLRRYLGLPLSTT-------AHTLRHSFATHLLSNGGDLRSIQSILGHFR 291 P R+ +R+ L + T HT RHSFATHLL G D+R++Q +LGH Sbjct: 235 MPCRHHRHDSTIRKALQNAVGMTNIMKKVNCHTFRHSFATHLLQTGTDIRTVQELLGHND 294 Query: 292 LSTTQIYTNV 301 L+TT+IYT+V Sbjct: 295 LNTTKIYTHV 304 >gi|108804268|ref|YP_644205.1| phage integrase [Rubrobacter xylanophilus DSM 9941] gi|108765511|gb|ABG04393.1| phage integrase [Rubrobacter xylanophilus DSM 9941] Length = 309 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 70/273 (25%), Positives = 123/273 (45%), Gaps = 16/273 (5%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 S T ++Y + R FL +L E++ + + +++ +I + + T + + Sbjct: 28 SPQTQKTYNTEIRAFLSYL----RERLG-KNLGEVTAEDI-SLYREHVTGAYAPATAAKK 81 Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 L+ ++ FL + IT +N LK PR + L + L + Sbjct: 82 LTALRRFLTFTYMGGITR----VNPEALKFFAKSPRVRQDPSYNILTEEELSRMLSAARA 137 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVPLLPSVRKA 209 + R+ A+L ++ GCGLR +E + L + + D LR++GKGDK+R VP+ P + + Sbjct: 138 DNPRDHALLAVMAGCGLREAEVVGLRVGDFREHGDAVLLRVRGKGDKVRNVPVSPELWRL 197 Query: 210 ILEYYDLCPFDLN--LNIQLPLFRGIRGK--PLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + Y L+ + + PLF GK PL Q +++ R G+ + H++ Sbjct: 198 VQRYVLSSGRSLSSQTDARKPLFPSRVGKDRPLTTRSIQNIVKKYVRAAGINKPISPHSI 257 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 RH+ T++ N L IQ LGH TT Y Sbjct: 258 RHTVGTNMAMNQAPLLVIQQFLGHSDPKTTMRY 290 >gi|118592747|ref|ZP_01550137.1| Integrase [Stappia aggregata IAM 12614] gi|118434798|gb|EAV41449.1| Integrase [Stappia aggregata IAM 12614] Length = 287 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/141 (40%), Positives = 72/141 (51%), Gaps = 10/141 (7%) Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLC-PFDL 221 Y GLR+SE + L +I + +RI+ GKG K R V L + + Y+ L P D Sbjct: 131 YAAGLRVSEVVGLKVADIDSQRGVIRIRHGKGGKDRYVMLSAQLLHILRTYWRLARPPDW 190 Query: 222 NLNIQLPLFRGIRGK-PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280 LF G P++ V R R G+ T HTLRHSFATHLL NG D+ Sbjct: 191 -------LFPRRNGSGPISITVLHAACRSARAAAGIDKRVTVHTLRHSFATHLLENGTDI 243 Query: 281 RSIQSILGHFRLSTTQIYTNV 301 R IQ +LGH LS+T YT V Sbjct: 244 RIIQVLLGHNNLSSTARYTKV 264 >gi|219856083|ref|YP_002473205.1| hypothetical protein CKR_2740 [Clostridium kluyveri NBRC 12016] gi|219569807|dbj|BAH07791.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 293 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/242 (25%), Positives = 113/242 (46%), Gaps = 20/242 (8%) Query: 63 IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122 ++ ++ T + ++ + + + S +S I+SF Y ++++ ++ LN+ +K Sbjct: 55 LQDITLTNLEEYLDSQLARGLAQASRSKSYYIIRSFYNYCCRKELVEKNIALNLEPIKVK 114 Query: 123 NSLPRALNEKQALTLV---DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 L + + + LV +N L+ T I+ +Y G+RISE +L + Sbjct: 115 RKERTYLTKNEVIVLVQKMENELIKT-------------IVMAIYHTGMRISECTNLKIK 161 Query: 180 NIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238 ++ + I GKG+K R +P+ ++ K + +Y ++N N F + Sbjct: 162 SVDFKNKVIHIIGGKGNKDRDIPISDTLNKILTKYIKNERLEVNSNY---FFATKASGRI 218 Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 +P R I + + LG +AH LRHSFA+ L+ +L IQ +LGH L T IY Sbjct: 219 SPQHINRQINETVKRLGWEKHVSAHILRHSFASKLIQQEVNLVKIQKLLGHSDLRVTSIY 278 Query: 299 TN 300 T+ Sbjct: 279 TH 280 >gi|153955710|ref|YP_001396475.1| tyrosine recombinase [Clostridium kluyveri DSM 555] gi|146348568|gb|EDK35104.1| Predicted tyrosine recombinase [Clostridium kluyveri DSM 555] Length = 287 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/242 (25%), Positives = 113/242 (46%), Gaps = 20/242 (8%) Query: 63 IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122 ++ ++ T + ++ + + + S +S I+SF Y ++++ ++ LN+ +K Sbjct: 49 LQDITLTNLEEYLDSQLARGLAQASRSKSYYIIRSFYNYCCRKELVEKNIALNLEPIKVK 108 Query: 123 NSLPRALNEKQALTLV---DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 L + + + LV +N L+ T I+ +Y G+RISE +L + Sbjct: 109 RKERTYLTKNEVIVLVQKMENELIKT-------------IVMAIYHTGMRISECTNLKIK 155 Query: 180 NIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238 ++ + I GKG+K R +P+ ++ K + +Y ++N N F + Sbjct: 156 SVDFKNKVIHIIGGKGNKDRDIPISDTLNKILTKYIKNERLEVNSNY---FFATKASGRI 212 Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 +P R I + + LG +AH LRHSFA+ L+ +L IQ +LGH L T IY Sbjct: 213 SPQHINRQINETVKRLGWEKHVSAHILRHSFASKLIQQEVNLVKIQKLLGHSDLRVTSIY 272 Query: 299 TN 300 T+ Sbjct: 273 TH 274 >gi|91792496|ref|YP_562147.1| phage integrase [Shewanella denitrificans OS217] gi|91714498|gb|ABE54424.1| phage integrase [Shewanella denitrificans OS217] Length = 296 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/155 (34%), Positives = 80/155 (51%), Gaps = 14/155 (9%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEY 213 R LY GLR+ EA+SL +I + I+ KG K R++PL +A+ Y Sbjct: 125 RYQVCFLTLYSMGLRLGEAVSLQIGDIDSQLMQVHIRDAKGGKDRLIPLPQRTLQALRYY 184 Query: 214 YDLCPFDLNLNIQLP--LFRGIRGKP---LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 + + P LF G GKP ++ G Q+ ++++ + S + H LRHS Sbjct: 185 WQ--------THRHPRYLFPGKDGKPNSLMDRGGIQKAMKKVISECHIHKSISPHNLRHS 236 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 +ATHLL G DLRS+Q +LGH L+TT YT + + Sbjct: 237 YATHLLEQGLDLRSVQQLLGHNSLNTTARYTRLTT 271 >gi|296132971|ref|YP_003640218.1| integrase family protein [Thermincola sp. JR] gi|296031549|gb|ADG82317.1| integrase family protein [Thermincola potens JR] Length = 282 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 66/247 (26%), Positives = 112/247 (45%), Gaps = 29/247 (11%) Query: 61 QTIRQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119 + + + Y E+R F+ TQ K+ + ++ S I+ F + + + + N+ + + Sbjct: 38 KPLEHMGYDEVREFLHHAITQRKLSCSYVNQTYSAIRFFYETV----LGWDWNMKQVPRV 93 Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 K+ +LP L+ + + NV + H+ AIL Y GLR+ E L Sbjct: 94 KREKTLPAVLSIDEVKAIF-NVTKNIKHK---------AILMTTYAAGLRVGEVTRLKIS 143 Query: 180 NIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238 +I + I+ GKG K R L P+ + +Y+ P + GKP Sbjct: 144 DIDSKNMQILIKLGKGKKARYSLLSPANLSILRQYW---------RQYRPSYWLFPGKPS 194 Query: 239 NPGVFQRYIRQL----RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 + + R ++Q+ + G+ + HTLRH FATHLL G D+ IQ +LGH + T Sbjct: 195 DKPISVRTVQQIFYDAKVLAGIQKDVSIHTLRHCFATHLLEAGTDILHIQQLLGHTSIHT 254 Query: 295 TQIYTNV 301 T IY ++ Sbjct: 255 TCIYLHL 261 >gi|319644364|ref|ZP_07998837.1| hypothetical protein HMPREF9011_04440 [Bacteroides sp. 3_1_40A] gi|317384161|gb|EFV65135.1| hypothetical protein HMPREF9011_04440 [Bacteroides sp. 3_1_40A] Length = 346 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 71/268 (26%), Positives = 120/268 (44%), Gaps = 29/268 (10%) Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKI------TTESNILNMRNLKKSNSLPRALNE 131 + +K ++ LS +K+FL++L +KI + I M+ KK + Sbjct: 76 KEVRKCSPQTCNHRLSILKNFLRFLAHKKIQFIKYDCDAAEIKRMQQPKKQVEVITKYTI 135 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LR 189 K+ ++ L I R+ A+ LLY G RI E LSL + D++ + Sbjct: 136 KRIFASINTRTL--------IGKRDFALFNLLYSTGTRIDEILSLRLSALHLDETKGYIL 187 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDL------CPFDLNLNIQLPLFRGIRGKPLNPGVF 243 + GKG+K R + LL S+ + + Y L P D + P++ K + + Sbjct: 188 VLGKGNKQRTIYLLNSMVRILRHYVKLFHPANPLPSDF---VFFPIYGHANKKITSEAIS 244 Query: 244 QR---YIRQLRR-YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 +R Y+R + L +P+ H+ RH+ ATH L +G +L IQ +LGH + TT Y Sbjct: 245 KRLKMYVRIASQGLLEIPVDFHCHSFRHARATHWLEDGVNLAQIQKLLGHESIETTMKYV 304 Query: 300 NVNSKNGGDWMMEIYDQTHPSITQKDKK 327 V+S+ + + D + +K KK Sbjct: 305 GVSSEQMIQALCSMEDNLTLGVEKKYKK 332 >gi|125624456|ref|YP_001032939.1| putative integrase/recombinase [Lactococcus lactis subsp. cremoris MG1363] gi|124493264|emb|CAL98231.1| putative integrase/recombinase [Lactococcus lactis subsp. cremoris MG1363] gi|300071244|gb|ADJ60644.1| putative integrase/recombinase [Lactococcus lactis subsp. cremoris NZ9000] Length = 324 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 83/159 (52%), Gaps = 6/159 (3%) Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 T TK+++ RN ++ +L G+RI+EALSL +NI D Q ++ GKG K RIV P Sbjct: 144 TGFCTKFVNERNYLLILILTDTGMRINEALSLKLENINDSQIIIK-NGKGKKDRIVHCSP 202 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPL---FRGIRGKPLNPGVFQRYIRQLRRYLGL--PLS 259 V K L+Y N +P+ F GK + + ++ I ++ + + + + Sbjct: 203 LVYKQYLKYNRAKENYFLSNGIVPIENIFVTKFGKKYDYRLAEKEIYKIGKAVNIRDTIR 262 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + HT RH FA L+ D+ IQ +LGH + TT+IY Sbjct: 263 ISPHTFRHYFAQKLVRENVDIYMIQKLLGHASIKTTEIY 301 >gi|307822466|ref|ZP_07652697.1| integrase family protein [Methylobacter tundripaludum SV96] gi|307736070|gb|EFO06916.1| integrase family protein [Methylobacter tundripaludum SV96] Length = 291 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 104/224 (46%), Gaps = 30/224 (13%) Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL---VDNVLLHTSH 147 SL+ + LK+L + + + M + + LP L+ ++ L VDN+ H Sbjct: 71 SLNATLTGLKFLFETTLDRPELLTKMHPVHVPHKLPVVLSREEVARLIAAVDNL----KH 126 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206 +T L + YG GLR SE +SL +I + TLRI QGKG K R L P + Sbjct: 127 QTA---------LSVAYGAGLRASEVVSLKVGDIDSQRMTLRIEQGKGSKDRYAMLSPVL 177 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS------- 259 + + ++ + LF G+ P++P RQL R + Sbjct: 178 LERLRAWWKFAHAQGKMLQGGWLFPGL--DPIDP----LSTRQLNRAIHAAAEAARIDKR 231 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + HTLRHSFATHLL D+R IQ +LGH +L TT +Y V + Sbjct: 232 VSMHTLRHSFATHLLEQKVDIRVIQVLLGHKKLETTALYAQVAT 275 >gi|308172775|ref|YP_003919480.1| Tyrosine recombinase xerD [Bacillus amyloliquefaciens DSM 7] gi|307605639|emb|CBI42010.1| Tyrosine recombinase xerD [Bacillus amyloliquefaciens DSM 7] Length = 321 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/226 (25%), Positives = 108/226 (47%), Gaps = 16/226 (7%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S+ L I++F +L+K ++ ++ + +K+ + + +Q L D +L Sbjct: 96 SINTRLRAIRAFFNFLEKNRMIGDNPAKELSLVKQKKEVIETFSREQ---LRD--ILRQP 150 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 + + R+ I+ LL G+R+ E ++ ++I + S + I GKG K R+VP+ +V Sbjct: 151 DQGTFTGFRDYTIMLLLIETGVRVRELTDISVKDIRWEDSQILINGKGYKERLVPIQSTV 210 Query: 207 RKAILEYYDL---CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTA 262 + + +Y + P D LF I PL Q + + R + + + Sbjct: 211 KTRLRKYVQIRGDVPND-------ALFVTIDNTPLTTRQVQNRLSKYGRMANIKNVRCSP 263 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 HT RH+FA + NG D+ ++Q++LGH L + Y N+ S++ D Sbjct: 264 HTFRHTFAKMSVQNGADVFALQAVLGHSSLDMVRNYVNLFSRDVMD 309 >gi|294056434|ref|YP_003550092.1| integron integrase [Coraliomargarita akajimensis DSM 45221] gi|293615767|gb|ADE55922.1| integron integrase [Coraliomargarita akajimensis DSM 45221] Length = 443 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/185 (32%), Positives = 84/185 (45%), Gaps = 44/185 (23%) Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPL-----------LPSVRKAIL 211 Y GLR+SE L Q++ ++ + ++ GKG K R+ PL L VR Sbjct: 253 YAAGLRVSELCRLRIQDLDLKRNQIMVRCGKGGKDRVAPLSEKLVEALEVHLRWVRTGFE 312 Query: 212 EYYDLCPFDLNLNIQLPLF--------------------RGIRGKPLN---------PGV 242 E DL DL+ + LP R I P P Sbjct: 313 E--DLARSDLD-GVYLPDALKRKHSNAGRDWRWQWVWPSREISTDPRGGARRRHHVLPRG 369 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 +QR + + GL T+HTLRHSFATHLL +G D+R++Q +LGH ++ TTQ+Y +V Sbjct: 370 YQRVVSMAGKRAGLNKRITSHTLRHSFATHLLEDGVDIRTVQDLLGHQQVETTQVYLHVM 429 Query: 303 SKNGG 307 K G Sbjct: 430 QKPGA 434 >gi|254445476|ref|ZP_05058952.1| integron integrase subfamily, putative [Verrucomicrobiae bacterium DG1235] gi|198259784|gb|EDY84092.1| integron integrase subfamily, putative [Verrucomicrobiae bacterium DG1235] Length = 459 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 68/275 (24%), Positives = 111/275 (40%), Gaps = 67/275 (24%) Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNM-------------------RNLKKSNSLPRA 128 L+R++SG + ++ + T+ LN R + +LP Sbjct: 186 LERAISGFLDHIAVVEGVAVATQRQALNALIFAFRACLGIEPGLLPEYRGATRGRALPVV 245 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 L++ + +D V L ++ LLYG GLR+SEAL L +++ ++ Sbjct: 246 LSKGEIGRFLDCVELKVG-----------VLVKLLYGGGLRLSEALRLRVKDLDFAHGSV 294 Query: 189 RIQ-GKGDKIR--------IVPLLPSVRK----------------------------AIL 211 ++ GKG K R + PL +RK A Sbjct: 295 VVRDGKGGKDRRTTLPAGLVGPLREQLRKVRVLFDKDRAEGRDGVYLPNKLERKYPNASR 354 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 E+ F + ++ P R V QR ++ G+ T H +RHSFAT Sbjct: 355 EWIWQYVFPTDKLVKDPRSEAFRRHHWGERVIQRAVKDAAMAAGIHKRVTPHVMRHSFAT 414 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 HLL +G D+R++Q +LGH + TT IY +V ++ G Sbjct: 415 HLLEDGYDIRTVQELLGHASVETTMIYLHVMNRPG 449 >gi|170289596|ref|YP_001739834.1| integrase family protein [Thermotoga sp. RQ2] gi|281413176|ref|YP_003347255.1| integrase family protein [Thermotoga naphthophila RKU-10] gi|170177099|gb|ACB10151.1| integrase family protein [Thermotoga sp. RQ2] gi|281374279|gb|ADA67841.1| integrase family protein [Thermotoga naphthophila RKU-10] Length = 253 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 77/289 (26%), Positives = 133/289 (46%), Gaps = 52/289 (17%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ L++ + S+ TL Y R+F F E +T +T ++ T ISK Sbjct: 4 YLEYLKVVKKRSERTLYQYRSILREFTRF------EPVTPETWKEYLNT-----ISKNTP 52 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNILNMRNLKKSNSLPRA--LNE-KQALT 136 + + L +K++L + R + E N + LP+A L+E ++ + Sbjct: 53 A-----TQRNKLVVVKNYLNWKADRGLLNIEERFWNEAEPPRHTVLPKAIELDEVRRIIE 107 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGD 195 DN L AI +L G+R+SE ++L+ +I +++ + +RI+GKG+ Sbjct: 108 ACDNSLYR-------------AIFKVLANTGMRVSEIVNLSVHDISVNETARIRIKGKGN 154 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 K RI+ + ++ + E + F+ + P R I QR +++ R G Sbjct: 155 KERIINI---SKELVEELMNSGFFE-----KKPSVRSI----------QRAVKRYARKAG 196 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + T H RHSFA L+ G L IQ++LGH +STT IY + S+ Sbjct: 197 IKKKVTPHIFRHSFAVALIERGVPLNKIQALLGHANISTTSIYLKIASE 245 >gi|148270896|ref|YP_001245356.1| phage integrase family protein [Thermotoga petrophila RKU-1] gi|147736440|gb|ABQ47780.1| phage integrase family protein [Thermotoga petrophila RKU-1] Length = 256 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/148 (33%), Positives = 77/148 (52%), Gaps = 19/148 (12%) Query: 158 AILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 AI +L G+R+SE + L+ Q+I ++D + +RI+GKG+K RI+ + R + E Sbjct: 119 AIFKVLANTGMRVSELVGLSIQDISLNDTARIRIKGKGNKERIINV---SRDLVEELVRS 175 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 F+ + P R I QR +++ R G+ T H RHSFA L+ Sbjct: 176 GFFE-----KKPSVRSI----------QRAVKRYARKAGIRKKVTPHIFRHSFAVALIER 220 Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSK 304 G L IQ++LGH +STT IY + S+ Sbjct: 221 GIPLNKIQALLGHANISTTSIYLKIASE 248 >gi|251778556|ref|ZP_04821476.1| putative site-specific recombinase/integrase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082871|gb|EES48761.1| putative site-specific recombinase/integrase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 291 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 71/273 (26%), Positives = 124/273 (45%), Gaps = 11/273 (4%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEE-KITIQTIRQLSYTEIRAFISKRRTQKIGD 85 +E G S T++SY D + F+ FL E T+Q +SY + F+ + + Sbjct: 13 VEDGKSSKTIESYVGDIKAFIEFLGDKGAEFNGTLQRFYVVSY---KNFLVESNYEV--- 66 Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 ++ + ++ I + +YL E + N ++ K E + V+ +L + Sbjct: 67 ATINKKINSIHALNRYLVATGAMKEIVVENSKDRIKIAYGSEKQVEVYSDKEVERILFYI 126 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 +E K + RN I+ LL G+R+SE S+ ++I +++I GKG K R VPL Sbjct: 127 QNEEK-VSKRNKVIVMLLLYTGVRVSELCSIKIKDIDFLNYSIKIYGKGGKFREVPLKFD 185 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + I EY + D N+ L G RG L + +L + +G+ HT Sbjct: 186 LADVIKEY--IKDRDYNVKDSEYLVIGQRG-ALKRDAINTMLERLTKDIGMVNKLKPHTF 242 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 RH+F T L++ G + ++ + GH + TT + Sbjct: 243 RHTFCTRLINRGVPISTVSKLAGHSSVDTTATF 275 >gi|146284555|ref|YP_001165508.1| phage integrase family protein [Enterobacter sp. 638] gi|145320688|gb|ABP62834.1| phage integrase family protein [Enterobacter sp. 638] Length = 329 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 106/217 (48%), Gaps = 20/217 (9%) Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR--ALNEKQALTLVDNVLLHTSHE 148 +L G+ LK + + +I +RNL+ S LPR AL ++ + + + Sbjct: 106 ALKGVAKEAWMLKLMDVESFQHIRAVRNLRGSR-LPRGRALPAEE----IGKLFAVCEAD 160 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 ++ R++A+L ++ GCGLR SE + L+ +++ + LR+ GKG+K R+ + + Sbjct: 161 ATYLGVRDAALLGVILGCGLRRSETVGLSLSDVVTHERALRVLGKGNKERLAYMPAGTWQ 220 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIR-------GKPLNPGVFQRYIRQLRRYLGLPLSTT 261 + + D + PLF IR + + V+ +I Q+R+ Sbjct: 221 RLQTWID----QVRGEAAGPLFTRIRRFDTLTNDRLTDQAVY--HILQMRQRQAQIERCA 274 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 H LR +FAT +L NG DL +++ +GH ++TTQ Y Sbjct: 275 PHDLRRTFATAMLDNGEDLITVKDAMGHASVTTTQQY 311 >gi|34451618|gb|AAQ72365.1| putative integrase [Thermus sp. R] Length = 391 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 73/272 (26%), Positives = 122/272 (44%), Gaps = 37/272 (13%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 LE+E G S T + Y D +F ++ E ++ IRAF++ R ++ Sbjct: 92 LEMEEGRSPRTAKEYLMDAG---LFARWFRERHGRPPRWEEVGSQHIRAFLASR---EVS 145 Query: 85 DRSLKRSLSGIKSFLKYLKKR------KITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R L+ ++ +YL + K TE ++ K LP L + L+ Sbjct: 146 PYRAGRVLASLRKLFRYLAEVEGLPLLKDPTE----GVKRPKLPRRLPVYLTPPEVARLL 201 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGD 195 + S + R+ A+L LYG GLR+SEAL+LT ++ +R+QGKG Sbjct: 202 QAAYQNRSPR---VALRDWALLAFLYGTGLRLSEALALTYADLTYQDGIPHAIRVQGKGG 258 Query: 196 KIRIVPLLPSVRKAI--------LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 K R+V L P+ ++A+ LE + P+ + + P RGKP + + + Sbjct: 259 KERVVVLSPTAQRALHQWLKHRNLEGHPTSPYIWS-HTSGP----NRGKPFSARAVEAMV 313 Query: 248 RQLRRYLGLP--LSTTAHTLRHSFATHLLSNG 277 +++ + GL T H LRHS+A+ L+ G Sbjct: 314 KRVAKRAGLKDWRRITPHKLRHSYASALVEAG 345 >gi|89147424|gb|ABD62572.1| integrase [uncultured bacterium] Length = 163 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 35/64 (54%), Positives = 45/64 (70%) Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L+P QR +R R+ G+ T HTLRHSFATHLL NG D+R++Q +LGH +STT I Sbjct: 99 LDPRSIQRALRDALRFAGIAKHATPHTLRHSFATHLLDNGYDIRTVQELLGHKDVSTTMI 158 Query: 298 YTNV 301 YT+V Sbjct: 159 YTHV 162 >gi|241992588|gb|ACS73646.1| IntI [uncultured bacterium] gi|241992595|gb|ACS73651.1| IntI [uncultured bacterium] gi|241992630|gb|ACS73675.1| IntI [uncultured bacterium] Length = 316 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 38/74 (51%), Positives = 49/74 (66%) Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 P+ R IR L P QR IRQ + G+ T HTLRHSFATHLL +G D+R++Q +L Sbjct: 243 PVSRIIRRHHLYPQSLQRAIRQAVQAAGIVKPATTHTLRHSFATHLLMSGYDIRTVQELL 302 Query: 288 GHFRLSTTQIYTNV 301 GH ++TT IYT+V Sbjct: 303 GHADVATTMIYTHV 316 >gi|254427016|ref|ZP_05040723.1| integron integrase subfamily [Alcanivorax sp. DG881] gi|196193185|gb|EDX88144.1| integron integrase subfamily [Alcanivorax sp. DG881] Length = 328 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 79/306 (25%), Positives = 133/306 (43%), Gaps = 66/306 (21%) Query: 51 AFYTEEKITIQTIRQLSYT-----------EIRAFISKRRTQKIGDRSLKR-SLSGIKSF 98 ++ TE+ + +R + Y EI+AF+S Q+ S ++ L+ + F Sbjct: 29 SYRTEQTYVLWVVRYIRYNQLRHPSTMGAKEIQAFLSYMSVQRHCSPSTQKIVLNALNCF 88 Query: 99 LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158 + R + + LN R K+ +P +E++A ++ + + Sbjct: 89 YR----RFLQQDYGELNFRQSKRKPRIPAVFSEQEAQAVI-----------ALLSEPSQL 133 Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS-----VRKAILE 212 I LLYG GLR+SEAL + +++ D+ + + QGKGDK R LLP +R+ I Sbjct: 134 ICELLYGAGLRVSEALRIRIKDLDFDRMIITVHQGKGDKDRRT-LLPKSCEERLRQQIAI 192 Query: 213 YYDLCPFDLNLNIQ---LP--LFRGIRG-----------------KPLNPGVFQRY---- 246 +L D + +P L R G + G+ +R+ Sbjct: 193 ASNLYEMDRKNGVGPAWMPHALSRKYSGAGSQRIWQFIFPSKEPARDPETGIIRRHHYHQ 252 Query: 247 ------IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 ++Q + HT RHSFATHLL G D+R++Q +LGH +STT+ Y + Sbjct: 253 DNVRKHVKQAAAEAEITKLCGPHTFRHSFATHLLEKGYDIRTVQELLGHSDVSTTERYLH 312 Query: 301 VNSKNG 306 V ++ G Sbjct: 313 VMNRGG 318 >gi|94984539|ref|YP_603903.1| phage integrase [Deinococcus geothermalis DSM 11300] gi|94554820|gb|ABF44734.1| phage integrase [Deinococcus geothermalis DSM 11300] Length = 291 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/144 (33%), Positives = 73/144 (50%), Gaps = 6/144 (4%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 RN AIL LL GCGLR E SL ++ S +++ GK + RIVP+ + ++ + Y Sbjct: 130 RNCAILALLAGCGLRAGEVASLKLTDVDWHGSAVKVSGKTGE-RIVPMDRTTQRLLRRYV 188 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 + N+ L G+P+ + ++ G T H LRH+ AT L Sbjct: 189 THGRRGNHPNVFL-----FSGRPIKAMTLTHLLSRMSDRAGFTRRVTPHLLRHTAATTYL 243 Query: 275 SNGGDLRSIQSILGHFRLSTTQIY 298 NGGD+ S++ ILGH ++TT +Y Sbjct: 244 RNGGDVASLRRILGHATINTTALY 267 >gi|268316885|ref|YP_003290604.1| integrase family protein [Rhodothermus marinus DSM 4252] gi|262334419|gb|ACY48216.1| integrase family protein [Rhodothermus marinus DSM 4252] Length = 309 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 69/321 (21%), Positives = 143/321 (44%), Gaps = 31/321 (9%) Query: 6 LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65 LPE + + L L + R S+ T ++Y D +F F F+ + +++++ + + Sbjct: 2 LPEKLPLPAASAFADDLLPLFLSRCRSENTRRAYRNDLEEF--FGLFFEDGRLSLENVSK 59 Query: 66 LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 +++ + +I + + +L+R +S + SF K+ + ++ S ++ + L Sbjct: 60 VTFAHVNLYIEHLKRSGCAENTLRRKISSVSSFFKWAEAVELVDRSPVVRL-----LVQL 114 Query: 126 PRALNEKQALTLVDNV---LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI- 181 PRA E+ +TL +L + R+ A++ +L C LR SEA ++ ++I Sbjct: 115 PRASKERHIVTLSREEARQMLEAARAHPRTGIRDEALVRVLLYCWLRRSEAAAMNFEHIR 174 Query: 182 -MDDQSTLRI----QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI--- 233 + LR+ +G + ++I P + + + +Y + P++R Sbjct: 175 KIGAHYVLRLPRTKKGTEEIVKIPPHCMTSLERLAAFYG--------EARGPVWRSFSNN 226 Query: 234 -RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 RG+ L+ + +L R +GL AHTLRH+ T + G L +++ H + Sbjct: 227 SRGRRLSAQSIYNIVARLAREIGLDRRIGAHTLRHTGITLAVQGGAPLHKVRTQARHADI 286 Query: 293 STTQIYTNVN---SKNGGDWM 310 TT +Y + N D++ Sbjct: 287 QTTMVYVHQQDFLDDNAADYV 307 >gi|222530398|ref|YP_002574280.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725] gi|222457245|gb|ACM61507.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725] Length = 283 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 79/297 (26%), Positives = 138/297 (46%), Gaps = 38/297 (12%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE--EKITIQTIRQLSYTEIR 72 ++E NWL + +G + T ++Y R FL +Y E ++ + L R Sbjct: 1 MQEFHNWL----LGKGKMESTAKTY---IRAVENFLKWYQESYDREFDGKVLPLHIRNYR 53 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN--MRNLKKSNSLPRALN 130 +++ +K+ +++ +LS IKS+ +L ++ + + +L+ ++++ P L Sbjct: 54 SYLMT--VKKLNAKTINNNLSAIKSYCDFLVEKGLIETNPVLDDYFIDVQEPGVSPAKLE 111 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 K L + V+ + S AR+ AI Y L G+R+SE ++ +I+ D+ + Sbjct: 112 NKDFNKLEEAVVHYGS-------ARDIAIFYTLAYTGVRVSELCNIRLNDIVKDELII-Y 163 Query: 191 QGKGDKIRIVPLLPSVRKAILEY------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 GKG K R +PL +VR+AI + Y D LF RGK L+ Sbjct: 164 YGKGGKQRKIPLNRTVREAIDNWLKERGKYKYSHLDY-------LFISERGK-LDRSTVY 215 Query: 245 RYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 R I++ R + P+ H LRH F L G + + ++ GH R++TTQIY N Sbjct: 216 RIIKEYCRIAKIEPIG--PHQLRHYFCKRALEKGFTITEVAALAGHSRITTTQIYIN 270 >gi|237668049|ref|ZP_04528033.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E BL5262] gi|237656397|gb|EEP53953.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E BL5262] Length = 332 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 74/278 (26%), Positives = 122/278 (43%), Gaps = 31/278 (11%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 SK TL +Y R F F+ ++ + +S +IR F++ + + ++ Sbjct: 71 SKATLNNYMYTLRNFSNFI---------VKPVSNISKNDIRYFMAIN-YENLKPSTVNNK 120 Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 L+ IK+F ++L++ +I + N + LP+ L + ++ + L Sbjct: 121 LACIKAFFEWLEQEEIIPK----NPARYLQGTRLPKHLRHSLTIEELEKIRLSCK----- 171 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211 D R A++ L+ G RISE + ++ + LR+ GKGDK R V + I Sbjct: 172 -DVRERALIEFLFATGCRISEVVKANISDLDLSNNLLRVIGKGDKERTVFFNDKTKLHIK 230 Query: 212 EYYDLCPFD---LNLNIQLPLFR-GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 Y D + L + + P R G RG L I ++ + S H LRH Sbjct: 231 NYIDTRKDENEALFIASKFPYKRIGKRGLEL-------IISRIGERADIGKSVYPHLLRH 283 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + AT L +G D+ +IQ +LGH STTQIY + N Sbjct: 284 TMATLGLQSGADITTIQHLLGHTTPSTTQIYAETSLDN 321 >gi|158320856|ref|YP_001513363.1| integrase family protein [Alkaliphilus oremlandii OhILAs] gi|158141055|gb|ABW19367.1| integrase family protein [Alkaliphilus oremlandii OhILAs] Length = 312 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 71/289 (24%), Positives = 134/289 (46%), Gaps = 31/289 (10%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ----LSYTEIRAFISKRRTQKIG 84 +G ++ T+Q+YE F F+ E+IT+ ++Q LS + + + + + Sbjct: 18 KGNTEKTIQNYERMITYFQNFIGNKAMEEITLFDVKQYQLYLSSKKAEFKFTDKIDRTLS 77 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN---- 140 ++++ I+ FL + + E ++ LP+A K+ + ++ + Sbjct: 78 KKTIQTYTRQIRVFLNWAYAESLLKE-------DIGSKIKLPKA--PKKVIEILSDEEIE 128 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 +L ++ RN ++ L+ GLR E ++L I Q+ +++ GKG+K RI+ Sbjct: 129 LLYKCINDNTEFGLRNKCMISLMLDSGLRREEVITLDLDCIHFTQNIIKVHGKGEKERII 188 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP------LFRGIRGKPLNPGVFQRYIRQLRRYL 254 PL +K + +Y LN +P +F P+ V + + +L++ Sbjct: 189 PLGVYTKKLLFKY-------LNGYRPMPSYPTNRVFISQEKVPVTMDVMKMLMLRLKKRT 241 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 G+ H LRH+FAT L GGD S+Q ILGH L T++Y+++ S Sbjct: 242 GIQ-RLKPHLLRHTFATKYLIAGGDAFSLQMILGHTSLEMTRMYSHLAS 289 >gi|254498879|ref|ZP_05111584.1| putative integrase/recombinase [Legionella drancourtii LLAP12] gi|254351864|gb|EET10694.1| putative integrase/recombinase [Legionella drancourtii LLAP12] Length = 335 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 81/291 (27%), Positives = 135/291 (46%), Gaps = 27/291 (9%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEK-ITIQTIR--QLSYTEIRAFISK-RRTQKI 83 +R LS T+++Y F++ L F + K I I+ ++ Q+ I AF+ + + Sbjct: 21 QRNLSPNTIKAYR---DVFILLLRFCRDVKNIPIEKLQLEQVDVVLIEAFLDHIEKDRHC 77 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP--RALNEKQALTLVDNV 141 R+L L+ + +F +Y++ + L + ++ ++P R + + + D++ Sbjct: 78 TPRTLNHRLTTLHAFFRYIQV------EDPLYLLQCQRILAIPLRRFVRPEVSYLSKDHL 131 Query: 142 --LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIR 198 LL + K R+ +L LY G R+ E + LT ++ + + +RI GKG KIR Sbjct: 132 AALLAQPNLGKPEGRRDVVLLSTLYDTGARVQELIDLTVGDVRLKTPAQVRILGKGRKIR 191 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-PGV---FQRYIRQLRRYL 254 +VPL+ + + Y L PLFR +G L GV Q+Y R +R Sbjct: 192 VVPLMDNTANLLQSYLHENNLLLPETFDYPLFRNNQGNKLTRVGVNYILQKYERLVRE-- 249 Query: 255 GLPL---STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 P + HTLRH+ HLL G L I+ LGH + TT+IY N Sbjct: 250 ASPQYKQRISPHTLRHTKGMHLLQGGVSLDIIRDFLGHVDIKTTEIYARAN 300 >gi|91780847|ref|YP_556054.1| putative phage integrase [Burkholderia xenovorans LB400] gi|91693507|gb|ABE36704.1| Putative phage integrase [Burkholderia xenovorans LB400] Length = 291 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 76/277 (27%), Positives = 123/277 (44%), Gaps = 25/277 (9%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 R LS T +Y R+F FL + + T++ +R+ + S SL Sbjct: 22 RQLSPKTQDTYLRIVREFARFLG-RSPDTATVEDLRRYQLHLVDHGTSPV--------SL 72 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 +++G+K F + R ++ M ++ +LP L+ + L++ + H+ Sbjct: 73 NHAITGLKFFFEVTLDRP----DLMVRMHPVRVPRTLPVVLSPDEVRRLIEAAG-NLKHQ 127 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVR 207 T L + YG GLR SE ++L +I + TLRI QGKG + R L P + Sbjct: 128 TA---------LSVAYGAGLRASEVVALKVTDIDSQRMTLRIEQGKGRRDRYAMLSPVLL 178 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 + + ++ + + LF G+ PL+ R I + + HTLR Sbjct: 179 ERLRVWWHVARAQGRMPDGGWLFPGLDPVDPLSTRQLNRAIHAAAEAAQIDKRVSMHTLR 238 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 HSFATHLL D+R IQ +LGH +L T +Y V + Sbjct: 239 HSFATHLLEQKVDIRVIQVLLGHAKLENTALYVQVAT 275 >gi|227461200|gb|ACP39545.1| putative integron integrase [uncultured microorganism] Length = 308 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 86/180 (47%), Gaps = 37/180 (20%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAIL------ 211 + LLYG GLR+ E L++ +++ + L ++ GKG K R+ L S+R ++ Sbjct: 129 VASLLYGSGLRLHEGLTVRVKDLDFARRELVVRNGKGQKDRVTLLPESLRDPLVGHLTRL 188 Query: 212 -EYYD----------LCPFDLNLNIQLP--------LF--RGIRGKP---------LNPG 241 E+++ PF L LF I P L+PG Sbjct: 189 REWFENERRQKRPGVSLPFALAKKYPAASVSWGRQYLFPSASICADPYSRLPVRHHLHPG 248 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 QR + + R GL + HT RHSFATHLL +G D+R++Q +LGH + TT IYT+V Sbjct: 249 TVQRGVARAVRAAGLAKPASCHTFRHSFATHLLDSGYDIRTVQELLGHSNVKTTMIYTHV 308 >gi|218289451|ref|ZP_03493679.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1] gi|218240319|gb|EED07501.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1] Length = 145 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/140 (38%), Positives = 82/140 (58%), Gaps = 18/140 (12%) Query: 174 LSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232 ++L Q + + + LR+ +GKG K R VPL ++A++ Y + P D++ + LF G Sbjct: 2 INLNIQEVDLEGNVLRVCRGKGRKDRFVPLNEMAKEALIRYLMVRP-DVDDD---ALFIG 57 Query: 233 IR------GKPLNPGVFQRYIRQ--LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284 +R GK +F R +R+ +RR GL L H LRH+FAT LL G DLR++Q Sbjct: 58 MRTSRKRIGKNYLNALFHRCLREAGIRRK-GLTL----HKLRHTFATRLLERGADLRTLQ 112 Query: 285 SILGHFRLSTTQIYTNVNSK 304 +LGH LSTTQ+Y + +S+ Sbjct: 113 ELLGHENLSTTQVYVHASSE 132 >gi|60115682|ref|YP_209473.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|168239749|ref|ZP_02664807.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194733830|ref|YP_002112908.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|45758240|gb|AAS76452.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194709332|gb|ACF88555.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197287589|gb|EDY26981.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 325 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 64/219 (29%), Positives = 109/219 (49%), Gaps = 24/219 (10%) Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP--RAL--NEKQALTLVDNVLLHTS 146 +L G+ L+ + + +I +RNL+ S LP RAL E +AL V Sbjct: 102 ALKGVAKEAWMLRLMDVESFQHIRAVRNLRGSR-LPSGRALPQGEIRALFAV------CE 154 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 + + AR++A+L ++ GCGLR SE +SL ++++ LR+ GKG+K R+ + Sbjct: 155 ADRSCLGARDAAMLAVILGCGLRRSEVVSLDLRDVVTQDRALRVLGKGNKERLAYVPAGA 214 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIR-------GKPLNPGVFQRYIRQLRRYLGLPLS 259 + + + D ++ PLF IR + + V+ +I Q+R+ Sbjct: 215 WQRLQIWID----EIRGETPGPLFTRIRRFGDVTLNRLTDQAVY--HILQVRQGQAGITK 268 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + H LR +FAT +L NG DL +++ +GH ++TTQ Y Sbjct: 269 CSPHDLRRTFATAMLDNGEDLITVKDAMGHASVTTTQQY 307 >gi|86142418|ref|ZP_01060928.1| probable integrase [Leeuwenhoekiella blandensis MED217] gi|85831170|gb|EAQ49627.1| probable integrase [Leeuwenhoekiella blandensis MED217] Length = 195 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/155 (35%), Positives = 81/155 (52%), Gaps = 17/155 (10%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213 ++ +L LLYGCGLR E +L +++ D+ L I QGKG K R VPL + + Y Sbjct: 31 KHRLVLALLYGCGLRCFELCNLQLKDLDFDRMMLHIRQGKGRKDRYVPLSKMQIRGLQTY 90 Query: 214 YDLCPFDLNLNIQLP---LFRG--IRGK--PLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 L + P F G GK PL+ + + + R++ G+ T H+LR Sbjct: 91 ---------LRAEQPSIWCFTGNNSEGKAVPLSTQGVRWIVSEARKHSGIRKQVTTHSLR 141 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 HS+ATHLL G D+ S++ +LGH + TT Y +V Sbjct: 142 HSYATHLLEMGLDIMSVKDLLGHADIQTTLTYLHV 176 >gi|225174941|ref|ZP_03728938.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] gi|225169581|gb|EEG78378.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] Length = 286 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 72/278 (25%), Positives = 124/278 (44%), Gaps = 19/278 (6%) Query: 26 EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85 +IER S +T+ Y D R F ++ + ++ I+ +I F+ + + I Sbjct: 16 DIER--SPVTIALYLRDLRYFGSYMEKKHNGPVYLEDIKS---ADIEGFLRSLKERNIAP 70 Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 S R L ++SF K+ K+++ L + +K L++++ L D + T Sbjct: 71 NSRSRYLYTLRSFYKFAYKKELVERDISLAVDLVKLPTKERHYLSQQEVAELADTI---T 127 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLLP 204 + + I + L GLRISE + LT ++ D+ + I GKG+K R VP+ Sbjct: 128 NDLVRLI-------VIFLANTGLRISECIKLTMDDVDLDKGIIHVISGKGNKDRNVPINN 180 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 + +++Y D N N F + ++ +RQ + LG + + H Sbjct: 181 KLLPLLIDYKDNWRDAYNSNF---FFATKKTGTISNTYVNNTLRQAVQSLGWKKNVSCHI 237 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 LRHSFAT L+ L IQ +LGH L T +Y + + Sbjct: 238 LRHSFATSLVKQKVGLVEIQKLLGHSDLKITSVYMHAD 275 >gi|312126649|ref|YP_003991523.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108] gi|311776668|gb|ADQ06154.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108] Length = 283 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 78/297 (26%), Positives = 139/297 (46%), Gaps = 38/297 (12%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE--EKITIQTIRQLSYTEIR 72 ++E NWL + +G + T ++Y R FL +Y+E ++ + L R Sbjct: 1 MQEFFNWL----LGKGKMESTAKTY---IRAVENFLKWYSESYDREFDGKVLPLHIRNYR 53 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN--MRNLKKSNSLPRALN 130 +++ +K+ +++ +LS IKS+ +L ++ + + +L+ ++++ P L Sbjct: 54 SYLMT--VKKLNAKTINNNLSAIKSYCDFLVEKGVIETNPVLDDYFIDVQEPGVSPAKLE 111 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 K L + V+ + S AR+ AI Y L G+R+SE ++ +I+ D+ + Sbjct: 112 NKDFNKLEEAVVHYGS-------ARDIAIFYTLAYTGVRVSELCNIRLNDIVKDELII-Y 163 Query: 191 QGKGDKIRIVPLLPSVRKAILEY------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 GKG K R +PL +VR+AI + Y D LF RGK L+ Sbjct: 164 YGKGGKQRKIPLNRTVREAIDNWLKERGKYKYSHLDY-------LFISERGK-LDRSTVY 215 Query: 245 RYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 R I++ R + P+ H LRH F L G + + ++ GH R++TTQ+Y N Sbjct: 216 RIIKEYCRIAKIEPIG--PHQLRHYFCKRALEKGFTITEVAALAGHSRITTTQVYIN 270 >gi|75758220|ref|ZP_00738345.1| DNA integration/recombination/inversion protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74494274|gb|EAO57365.1| DNA integration/recombination/inversion protein [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 368 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 85/166 (51%), Gaps = 6/166 (3%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R++AI+ LL G+R+ E SL ++++ D L ++ K K +V + I++Y Sbjct: 204 RDAAIISLLLTSGIRVGELSSLRLKDVIFDSRKLVVERKRSKEDVVFFSKQTLEYIVQYL 263 Query: 215 DL--CPFDLNLNIQLPLFRGIRGKPLNP---GVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 ++ + + PLF +NP Q+ I + + G P TAH LRHSF Sbjct: 264 EVRESHYKADDKPTSPLFVTKYAGKINPISKNTVQKMIMKYAKIYGKP-ELTAHILRHSF 322 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 T++ ++R +Q LGH ++TTQIYT++ + + + E+++ Sbjct: 323 GTNVFKKTKNIRGVQEALGHSSINTTQIYTHMFEDDERELIDEVFE 368 >gi|228904845|ref|ZP_04068899.1| DNA integration/recombination/inversion protein [Bacillus thuringiensis IBL 4222] gi|228854859|gb|EEM99463.1| DNA integration/recombination/inversion protein [Bacillus thuringiensis IBL 4222] Length = 365 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 85/166 (51%), Gaps = 6/166 (3%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R++AI+ LL G+R+ E SL ++++ D L ++ K K +V + I++Y Sbjct: 201 RDAAIISLLLTSGIRVGELSSLRLKDVIFDSRKLVVERKRSKEDVVFFSKQTLEYIVQYL 260 Query: 215 DL--CPFDLNLNIQLPLFRGIRGKPLNP---GVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 ++ + + PLF +NP Q+ I + + G P TAH LRHSF Sbjct: 261 EVRESHYKADDKPTSPLFVTKYAGKINPISKNTVQKMIMKYAKIYGKP-ELTAHILRHSF 319 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 T++ ++R +Q LGH ++TTQIYT++ + + + E+++ Sbjct: 320 GTNVFKKTKNIRGVQEALGHSSINTTQIYTHMFEDDERELIDEVFE 365 >gi|320161829|ref|YP_004175054.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] gi|319995683|dbj|BAJ64454.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] Length = 292 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 65/304 (21%), Positives = 135/304 (44%), Gaps = 38/304 (12%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 L++ + WLQ E+ S +T++ Y D R F + + + ++ + E R + Sbjct: 4 LEQFEVWLQ----EQDRSPVTVRGYMADLRAFAAWFEQTNGKALGVEEVTPADVREYRGW 59 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 + ++ G +++R L ++++ ++ + + ++ ++ P L +++ Sbjct: 60 LQA--VKRAGAATVRRHLMALRAYCRWGVETERIDRDPTARVKLPREETLSPGWLAKQEQ 117 Query: 135 LTLVDNVLLHTSHET----KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 L+ S + + R+ A++ L GLRI+EA +LT +++ + + + Sbjct: 118 YRLLREAERAVSAADTPTRRRLAVRDRALVVFLLNTGLRIAEACALTVEDVQIGERSGWV 177 Query: 191 ---QGKGDKIRIVPLLPSVRKAILEYYDL------CPFDLNLNIQLPLFRGIRGKPLNPG 241 GKG+K R VPL VR+A+ + + FDL + G Sbjct: 178 VVRGGKGNKSRKVPLNVEVRRALNAWREERGDGEGSVFDLTPS----------------G 221 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 ++R + RR + HTLRH+ A +L+ G L + ++LGH L+TT++Y Sbjct: 222 AYRRLVEMGRR---AGVEVHPHTLRHTLAKNLVDAGVGLHEVAALLGHSSLNTTRVYVTP 278 Query: 302 NSKN 305 ++ Sbjct: 279 GERD 282 >gi|241992564|gb|ACS73629.1| IntI1 [uncultured bacterium] Length = 315 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 84/333 (25%), Positives = 140/333 (42%), Gaps = 62/333 (18%) Query: 6 LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65 LP + S ++L + + ++ L S LT Q+Y R F+ F ++ Sbjct: 8 LPPLRSVKVLDQLRERIRYLHY----SLLTEQAYVHWVRAFIRFHG--------VRHPAT 55 Query: 66 LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 L +E+ AF+S ++ S R + + L + K T + + + S L Sbjct: 56 LGSSEVEAFLSWLANERKVSVSTHRQ--ALAALLFFYGKVLCTDLPWLQEIGRPRPSRRL 113 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 P L + + ++ +++ + LLYG G+RISE L L +++ D Sbjct: 114 PVVLTPDEVVRILG-----------FLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFDH 162 Query: 186 STLRI-QGKGDKIR--IVP--LLPSVR--------------------------------K 208 T+ + +GKG K R ++P L PS+R + Sbjct: 163 GTIIVREGKGSKDRALMLPESLAPSLRERLSRARAWWLKDQAEGRSGVALPDALERKYPR 222 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 A + F + + P +R + FQR ++ G+ T HTLRHS Sbjct: 223 AGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHS 282 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 FAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 283 FATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|312174392|emb|CBX82639.1| Tyrosine recombinase xerD [Erwinia amylovora ATCC BAA-2158] Length = 346 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 79/318 (24%), Positives = 138/318 (43%), Gaps = 47/318 (14%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLA---FYTEEKITIQTIRQLSYTEIRAFISKRRT--QK 82 ER S+ TL++ +F+ + A Y IT + + R R+T + Sbjct: 44 ERNWSETTLKTQTHHGYRFICWAAERGLYHAADITRPVLERYQ----RWLYQYRKTNGEA 99 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL----NEKQALTLV 138 + R+ + +L ++ + ++ K+ + + ++ + LPR + ++ L L Sbjct: 100 LTSRTQRTTLQPLQVWFSWMAKQGLILANPAADLELPRLEKHLPRTILSVEQVEEVLNLC 159 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKI 197 D L R+ A+L LL+ G+R E L + + L I QGKG + Sbjct: 160 DLSTLQ--------GMRDRALLELLWSTGIRRGEVARLETYSADFSRKILTIVQGKGKQD 211 Query: 198 RIVPL-----------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 R++P+ L VR +L D L ++ G+ G N G+ Sbjct: 212 RVIPVGERALCWLRHYLHQVRPEVLVSPDCKALFLAMD-------GVAGLTAN-GITHAV 263 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 + LR G+ + H RH+ AT +L NG DLR IQ++LGH + +TQIYT V+ + Sbjct: 264 VPYLR-AAGIE-KGSCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIRA- 320 Query: 307 GDWMMEIYDQTHPSITQK 324 + ++ THP+ Q+ Sbjct: 321 ---LQAVHASTHPAEQQE 335 >gi|167628727|ref|YP_001679226.1| phage integrase [Heliobacterium modesticaldum Ice1] gi|167630972|ref|YP_001681471.1| phage integrase [Heliobacterium modesticaldum Ice1] gi|167591467|gb|ABZ83215.1| phage integrase [Heliobacterium modesticaldum Ice1] gi|167593712|gb|ABZ85460.1| phage integrase [Heliobacterium modesticaldum Ice1] Length = 341 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 64/224 (28%), Positives = 99/224 (44%), Gaps = 17/224 (7%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP--RALNEKQALTLVDNV--LLHTSH 147 L+GI +F +YL+ K M ++ S+P R + VD V +L Sbjct: 86 LAGIHAFFRYLQSEKPDM------MLQCQQVLSIPVKRTVKPTVNYLTVDAVKTILAMPD 139 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSV 206 + R+ A+L LLY G R+SE + L P+++ + + + GKG K R PL + Sbjct: 140 TSTVYGMRDLALLGLLYDTGARVSELIELRPKDLRLAAPPVVTLFGKGRKSRQCPLSSEM 199 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG----VFQRYIRQLRRYLG--LPLST 260 +++Y D PLF G + L + +Y R +P Sbjct: 200 TGHLVKYLSAWGLDAPAKSDHPLFVGHNAEKLTRAGVAYILSKYASAAREKDASIIPTIV 259 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + H LRHS A HLL G +L I+ LGH + TT+IY +S+ Sbjct: 260 SPHMLRHSKAMHLLQAGVNLVYIRDWLGHASVKTTEIYARADSE 303 >gi|259909522|ref|YP_002649878.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|224965144|emb|CAX56676.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96] Length = 345 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 66/252 (26%), Positives = 122/252 (48%), Gaps = 18/252 (7%) Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLVD 139 + + R+ + +L ++ + ++L K+ + + ++ + LPR L+ +Q +V+ Sbjct: 98 EPLSPRTQRTALQPLQVWFRWLAKQNLILANPAADLELPRLEKHLPRTILSVEQVEDIVN 157 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR 198 L+T R+ A+L LL+ G+R E L + + L I QGKG + R Sbjct: 158 LCDLNTLQ-----GMRDRALLELLWSTGIRRGEVARLETWSADFSRKILTIVQGKGKQDR 212 Query: 199 IVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLF---RGIRGKPLNPGVFQRYIRQLRRYL 254 ++P+ + Y +++ P + + LF G+ G N G+ + LR Sbjct: 213 VIPVGERALWWLRHYLHEVRPEIVAVAGCKALFVAMDGVAGLTAN-GITHAVVPYLR-AA 270 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ + H RH+ AT +L NG DLR IQ++LGH + +TQIYT V+ + + ++ Sbjct: 271 GIE-KGSCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIRA----LQAVH 325 Query: 315 DQTHPSITQKDK 326 THP+ +D+ Sbjct: 326 ASTHPAEQTEDE 337 >gi|330898871|gb|EGH30290.1| Phage integrase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 215 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 13/178 (7%) Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 AL + QA L+D E+ R+ A+L +L GLR EA L +I + + Sbjct: 27 ALGDHQAKALLD-----APDESTLKGLRDRAMLAVLLYHGLRREEAAQLQVSDIQERRGI 81 Query: 188 --LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245 L+I GKG K+R +PL P I Y + L+ + ++PLF +RGKP + GV Sbjct: 82 QHLKIHGKGGKVRYLPLHPVAAGRIHLYLERSGHHLD-DKKVPLFIPLRGKPTDAGVSAN 140 Query: 246 ----YIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + + G+ ++ H LR + AT+ L + D+ +Q+ LGH +STT+IY Sbjct: 141 GIYTVVEAYAKKAGIEVAGLGVHGLRATAATNALDHEADIAKVQAWLGHANISTTKIY 198 >gi|171915255|ref|ZP_02930725.1| integron integrase [Verrucomicrobium spinosum DSM 4136] Length = 260 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 65/186 (34%), Positives = 88/186 (47%), Gaps = 41/186 (22%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAIL------- 211 LLYGCGLR+ E L L +++ D + +I+ GKG K R+V L S A+ Sbjct: 69 LLYGCGLRVMELLRLRIKDV--DLAGGKIEVRDGKGGKDRVVCLPGSAMAALQRQMERAK 126 Query: 212 ------EYYDLCPFDL---------NLNIQLPLFRGIRGKPL--NP--GVFQRYI---RQ 249 E +L P L + P F L +P G +R+ ++ Sbjct: 127 RVYEQDEMANLSPVWLPDAYATKNPSAGKSWPWFWLFPADKLATDPRSGTLRRHHSHEQR 186 Query: 250 LRRYL-------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 L R L GL TAHT+RHSFATHLL G D+RS+Q +LGH + TT+IYT + Sbjct: 187 LGRALSLAAKRAGLAKKVTAHTMRHSFATHLLLRGVDIRSVQELLGHADVRTTEIYTQLA 246 Query: 303 SKNGGD 308 GD Sbjct: 247 RAMRGD 252 >gi|161868003|ref|YP_001598184.1| Int2 [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|313116779|ref|YP_004032929.1| integrase/recombinase [Edwardsiella tarda] gi|161087382|gb|ABX56852.1| Int2 [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|312192416|gb|ADQ43902.1| integrase/recombinase [Edwardsiella tarda] Length = 363 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 108/217 (49%), Gaps = 20/217 (9%) Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP--RALNEKQALTLVDNVLLHTSHE 148 +L G+ L+ + + +I +RNL+ S LP RAL + + + + + Sbjct: 140 ALKGVAKEAWMLRLMDVESFQHIRAVRNLRGSR-LPSGRALPQGE----IRALFAVCEAD 194 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 + AR++A+L ++ GCGLR SE +SL ++++ LR+ GKG+K R+ + + Sbjct: 195 RSCLGARDAAMLAVILGCGLRRSEVVSLDLRDVVTQDRALRVLGKGNKERLAYVPAGAWQ 254 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIR-------GKPLNPGVFQRYIRQLRRYLGLPLSTT 261 + + D ++ PLF IR + + V+ +I Q+R+ + Sbjct: 255 RLQIWID----EIRGETPGPLFTRIRRFGDVTLNRLTDQAVY--HILQVRQGQAGITKCS 308 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 H LR +FAT +L NG DL +++ +GH ++TTQ Y Sbjct: 309 PHDLRRTFATAMLDNGEDLITVKDAMGHASVTTTQQY 345 >gi|149196595|ref|ZP_01873649.1| phage integrase [Lentisphaera araneosa HTCC2155] gi|149140275|gb|EDM28674.1| phage integrase [Lentisphaera araneosa HTCC2155] Length = 298 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 73/230 (31%), Positives = 108/230 (46%), Gaps = 34/230 (14%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 ++K + F +Y+ KR E L + + + SLP L++ D LL S Sbjct: 67 TVKMDRCALSFFYQYVLKR----EWKWLEIVRIPRVKSLPDILSQ-------DETLLILS 115 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPS 205 H K AR L +Y GLRISE + + +I D+ L ++ KG K R+VPL P Sbjct: 116 HLEK---ARYRTCLTAIYSMGLRISEGVRIQTGDICKDRMRLHVRNSKGYKDRLVPL-PQ 171 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP---------LNPGVFQRYIRQLRRYLGL 256 V +L Y + ++ N L LF GK ++ G Q + GL Sbjct: 172 VTYQMLRDY----WVMHRN-PLLLFPRYAGKSRSNSKTTLHMDKGGVQSAFKAALADSGL 226 Query: 257 PLSTTAHTLRHSFATHLLSNGGD----LRSIQSILGHFRLSTTQIYTNVN 302 + H+LRHS+ATHL+ G + LR IQ ILGH +TT IY++++ Sbjct: 227 AKQVSVHSLRHSYATHLVEAGVEAGVNLRVIQEILGHSSPATTAIYSHLS 276 >gi|331004724|ref|ZP_08328177.1| hypothetical protein HMPREF0491_03039 [Lachnospiraceae oral taxon 107 str. F0167] gi|330408981|gb|EGG88441.1| hypothetical protein HMPREF0491_03039 [Lachnospiraceae oral taxon 107 str. F0167] Length = 346 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 81/303 (26%), Positives = 138/303 (45%), Gaps = 24/303 (7%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK-------ITIQTIRQLSYTE 70 R +L L E+ S+ T++SY R+ L L + +EK IT + + + + +E Sbjct: 12 RSFFLAFLPEEQKCSQNTIRSY----RKSLELLFDFVKEKNSVALNEITFEMMDRSTISE 67 Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 +++ R I R+ + L I++F KY + IT +++ ++ +K++ P + Sbjct: 68 FLSYLETERNCSISTRNHR--LHCIRAFFKYAAQEDITVIAHLEEIQKVKRAKQ-PETIV 124 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLR 189 E + V +L T+ R++ +L LY G R+ E + + +I + + Sbjct: 125 EHMSEDAVQAILEQPDTCTEK-GKRDTFLLLFLYKTGARVQELVDIRLCDIQLGKYPKVT 183 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF----RGIRGKPLNPGV--- 242 I GKG K R +PL V + + +Y L + NL LF IR + V Sbjct: 184 IHGKGAKTRSIPLRDDVVQHLKKYLTLFHQEQNLFSDQYLFYVTRNQIRKRMTEDNVRKL 243 Query: 243 FQRYIRQLRRYLG-LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +Y Q R+ +P + H RHS+A L NG DL I LGH L TT IY + Sbjct: 244 VAKYGVQARKICKEVPENVHPHLFRHSWAMILYQNGVDLTLISQWLGHSNLETTLIYAHA 303 Query: 302 NSK 304 +++ Sbjct: 304 DTE 306 >gi|187921294|ref|YP_001890326.1| integrase family protein [Burkholderia phytofirmans PsJN] gi|187923078|ref|YP_001894720.1| integrase family protein [Burkholderia phytofirmans PsJN] gi|187714272|gb|ACD15496.1| integrase family protein [Burkholderia phytofirmans PsJN] gi|187719732|gb|ACD20955.1| integrase family protein [Burkholderia phytofirmans PsJN] Length = 291 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 80/294 (27%), Positives = 133/294 (45%), Gaps = 38/294 (12%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 RQ + ++ + R L+ T Y R+F FL + + T++ +R+ ++ Sbjct: 12 RQRMIDDMRM-RQLAPKTQDIYLHIVREFARFLG-RSPDTATVEDLRRYQL-----YLVD 64 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 T + SL +++G+K F R I+ M+ ++ LP L+ + L Sbjct: 65 HGTSAV---SLNHAITGLKFFFTVTLDRP----ELIVRMQPVRVPRILPVVLSPDEVRRL 117 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196 ++ + H+T L + YG GLR SE ++L ++ ++ TLRI QGKG + Sbjct: 118 IEAAG-NLKHQTA---------LSVAYGAGLRASEVVALKVTDVDSERMTLRIEQGKGRR 167 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 R L P + + + ++ + + LF G+ PL+ Q RQL R + Sbjct: 168 DRYAMLSPVLLERLRVWWRMARAQGKMFDGGWLFPGL--DPLD----QLSTRQLNRAIHA 221 Query: 257 PLS-------TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + HTLRHSFATHLL D+R IQ +LGH +L T +Y V + Sbjct: 222 AAEAAHIDKRVSMHTLRHSFATHLLEQKVDIRVIQVLLGHAKLENTALYVQVAT 275 >gi|256545162|ref|ZP_05472528.1| tyrosine recombinase XerC [Anaerococcus vaginalis ATCC 51170] gi|256399203|gb|EEU12814.1| tyrosine recombinase XerC [Anaerococcus vaginalis ATCC 51170] Length = 331 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 61/219 (27%), Positives = 108/219 (49%), Gaps = 8/219 (3%) Query: 90 RSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 R +S ++SF KYL + ++NI +RN K P L + L++ V + + Sbjct: 103 RKISALRSFYKYLHQEIEIIDNNITEKLRNPKIQKRQPVYLTLSETEHLLEIV---SQEK 159 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 +++ R+ AI++ G+R+SE +S+ ++I DD I GKG+K R + L + Sbjct: 160 NEFLKNRDMAIVFTFLTTGMRLSELVSVDLKDIKDDH--FSIIGKGNKERTIYLTKNCID 217 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRH 267 I Y + L LF R + ++ Q + + G + H LRH Sbjct: 218 LIKNYIKIRKKYLKDKKIDALFISTRKQRISNRAVQSTVEKYLEKAGFDTKIYSTHKLRH 277 Query: 268 SFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNSKN 305 + AT + G D+R+++ +LGH +STTQIYT+++ ++ Sbjct: 278 TAATLMYKYGNVDIRALKDVLGHESVSTTQIYTHLDDED 316 >gi|116625160|ref|YP_827316.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116228322|gb|ABJ87031.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 301 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 53/153 (34%), Positives = 73/153 (47%), Gaps = 4/153 (2%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213 R+ IL LY G+R +E L ++I ++ L I QGKG K R VPL P + + + Sbjct: 127 RHRTILMALYATGMRRAELCHLRIEDIDKERMVLHIRQGKGGKDREVPLPPKLLAQLRIH 186 Query: 214 YDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 Y P P + R +P+ RQ G+ S HTLRH FATH Sbjct: 187 YRALPH--RSAWVFPSLQSRRPDQPMTEKAVWHACRQAAWRAGITKSVHPHTLRHCFATH 244 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 LL NG +L IQ +LGH T IY ++ ++ Sbjct: 245 LLDNGAELPVIQVLLGHSDPRDTMIYLHLCTRQ 277 >gi|119356102|ref|YP_910746.1| integron integrase [Chlorobium phaeobacteroides DSM 266] gi|119353451|gb|ABL64322.1| integron integrase [Chlorobium phaeobacteroides DSM 266] Length = 338 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 70/276 (25%), Positives = 117/276 (42%), Gaps = 52/276 (18%) Query: 64 RQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122 +++ EI AF++ + K+ + ++LS + +++ ++I +++ R K Sbjct: 62 KEMREPEINAFLTHLAVEEKVSASTQNQALSALLFLYRHVIGKEIGDLGHLIRAR---KP 118 Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI- 181 + LP L + L+ + KW+ A L+YG GLR+ E L L Q+I Sbjct: 119 SHLPVVLTRDEVKALLVQLA-----GVKWLMAS------LMYGAGLRLMECLRLRVQDID 167 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY---------------------------- 213 L GKG K RI L S++K + ++ Sbjct: 168 FSSNEILVRDGKGAKDRITMLPESLKKPLADHLKQIKSLHDKDLAEGWGRVLLPGALDRK 227 Query: 214 YDLCPFDLNLNIQLPLFR-------GIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 Y P + P G G+ ++ + Q+ ++ + L T HT Sbjct: 228 YPNAPAEWRWQWVFPQEHRWKNAKTGEEGRHHMDESLIQKAVKAAVFHAQLTKRATCHTF 287 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 RHSFATHLL G D+R++Q +LGH + TT IYT+V Sbjct: 288 RHSFATHLLEGGYDIRTVQELLGHNDVRTTMIYTHV 323 >gi|9971650|dbj|BAB12601.1| intI2 [Escherichia coli] gi|50262989|gb|AAT72891.1| IntI2 [Shigella sonnei] gi|296881202|gb|ADH82143.1| IntI2 [Klebsiella pneumoniae] gi|296881208|gb|ADH82148.1| IntI2 [Klebsiella pneumoniae] gi|296881214|gb|ADH82153.1| IntI2 [Escherichia coli] Length = 325 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 65/196 (33%), Positives = 88/196 (44%), Gaps = 55/196 (28%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR--IVP--LLPSV 206 +D RN I LLYG GLRI+E L L ++ D + + GKG K R ++P L+P++ Sbjct: 118 MDTRNQVIFTLLYGAGLRINECLRLRVKDFDFDNGCITVHDGKGGKSRNSLLPTRLIPAI 177 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY---IRQLRRYLGLPLST--- 260 K ++E L D NL +G+ G L + +Y RQ P ST Sbjct: 178 -KXLIEQARLIQQDDNL-------QGV-GPSLPFALDHKYPSAYRQAAWMFVFPSSTLCN 228 Query: 261 -----------------------------------TAHTLRHSFATHLLSNGGDLRSIQS 285 T HT RHSFATHLL G D+R++Q Sbjct: 229 HPYNGKLCRHHLHDSVARKALKAAVQKAGIVSKRVTCHTFRHSFATHLLQAGRDIRTVQE 288 Query: 286 ILGHFRLSTTQIYTNV 301 +LGH + TTQIYT+V Sbjct: 289 LLGHNDVKTTQIYTHV 304 >gi|94442304|dbj|BAE93651.1| integron integrase [uncultured bacterium] Length = 238 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 62/180 (34%), Positives = 87/180 (48%), Gaps = 37/180 (20%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKG--DKIRIVP--LLPSVRKAILEY 213 I LLYG GLR++E+L L Q+I Q+ + I+ GKG D++ I+P L P +++ + Sbjct: 58 ITQLLYGAGLRLNESLRLRVQDIDFTQNQILIRDGKGAKDRVTILPQSLQPPLQEHLRRV 117 Query: 214 YDLCPFDLNLN---IQLP--LFRGI---------------------------RGKPLNPG 241 L DL + LP L R I R L+ Sbjct: 118 RILHDQDLEAGYGAVYLPDALARKIPNAAREWPWQWVFPASRISKDPRTGILRRHHLDSS 177 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 V Q+ +R R +P T H RHSFATHLL G D+R++Q +LGH + TT IYT+V Sbjct: 178 VVQKAVRDAARRADIPKRVTPHVFRHSFATHLLEAGYDIRTVQELLGHKDVRTTMIYTHV 237 >gi|83860039|ref|ZP_00953559.1| transposase [Oceanicaulis alexandrii HTCC2633] gi|83852398|gb|EAP90252.1| transposase [Oceanicaulis alexandrii HTCC2633] Length = 615 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 69/291 (23%), Positives = 132/291 (45%), Gaps = 26/291 (8%) Query: 6 LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65 +P I + + RQ + ++ + R S+ T ++Y D +F FL + + Sbjct: 5 VPVISATPVSPLRQRLIDDMNM-RHFSRETQRNYIRDVGRFAAFLGRPPDTATS------ 57 Query: 66 LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 ++R F ++R + ++ +S ++ F + R ++ M+ ++K L Sbjct: 58 ---EDLRRFQVEQREAGMPIPTMNSVVSALRFFFTHTLDRP-DLARRLVRMKQMRK---L 110 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 P L+ + L+ ++ A L + YG GLR+ E L +++ ++ Sbjct: 111 PVVLSRDEVARLLGATTC----------LKHQAALSVAYGAGLRVGEVAMLKVRDVDSER 160 Query: 186 STLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVF 243 LR++ GKG + R L + + +++ L ++ LF G+ KP++ Sbjct: 161 MLLRVERGKGGQYRNAMLPADLLTLLRQWWKLGREQGVMHHDGWLFPGLHAMKPISTRQL 220 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 R + + + G+ + HTLRHSFATHLL +G D+R IQ++LGH T Sbjct: 221 HRIVVEAAQAAGITKRVSPHTLRHSFATHLLEDGTDIRIIQALLGHVEACT 271 >gi|16611927|gb|AAL27410.1|AF429957_1 XerC-like protein [uncultured bacterium] Length = 312 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 73/246 (29%), Positives = 111/246 (45%), Gaps = 32/246 (13%) Query: 74 FISKRRTQKIGDRSLKRSLS-------GIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126 + + +R+Q R + S+S ++ FLK+L +R T L + + + + Sbjct: 65 WFAAKRSQGGRGRRISVSISTLSQYERALRPFLKWLYQRGYTQTDLSLELPHYRPPKQVV 124 Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILY-LLYGCGLRISEALSLTPQNIMDDQ 185 + D + + ++ +AR LY LL G+R EA+SL I + Sbjct: 125 QPFTP-------DELRAFFAAASEPPNARRKLALYRLLLDTGIRRGEAVSLQLDAIYWRE 177 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-------LFRGIRGKPL 238 T+R++GK RIV +AI EY + N + P LF G PL Sbjct: 178 RTMRVEGKTGG-RIVYFSERSLRAINEYLN--------NERRPRRPGEATLFLDRHGDPL 228 Query: 239 NPG-VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 G + Q IR RR + HT RH+FA L GGDLRS+Q +LGH +L TT I Sbjct: 229 RAGEITQETIRIARRAGIMRDHVGPHTFRHTFAVEYLKAGGDLRSLQVLLGHSKLETTSI 288 Query: 298 YTNVNS 303 Y +++S Sbjct: 289 YLHMDS 294 >gi|209516756|ref|ZP_03265608.1| integrase family protein [Burkholderia sp. H160] gi|209502873|gb|EEA02877.1| integrase family protein [Burkholderia sp. H160] Length = 416 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 73/284 (25%), Positives = 137/284 (48%), Gaps = 19/284 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-I 83 L ERGL + T++ + Q L + K +++Q++ ++ A + +R ++ Sbjct: 130 LRTERGLCEETIEGRRHNVAQLL------EQMKERGHSLKQVTLAQLDALLLERYGERHY 183 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 R+++ G+++F ++ + R + + + + + +LP + + + Sbjct: 184 APRTIQGHACGLRAFFQHAESRHWCPPGIAQGIQVPRVYRHATLPSSPSWQDV-----QR 238 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIV 200 LL+T+ ++ D R+ AIL LL GLR E L +++ +Q TL I K + + Sbjct: 239 LLNTTEGSRPTDIRDRAILLLLAVYGLRSGEVRRLRLEDLDWEQETLTITHSKSGRSQTY 298 Query: 201 PLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-L 258 PL + +AI+ Y ++ P I LP+ +R PLN + + + + L +P L Sbjct: 299 PLSRTAGQAIIRYLKEVRPQCSCREIFLPMRAPLR--PLNSSAIFQLVNRRMKALDIPVL 356 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 H LRH+ AT L++ G L++I LGH L TT+IY V+ Sbjct: 357 HHGPHALRHACATRLINQGLPLKAIADQLGHRSLETTRIYAKVD 400 >gi|254431040|ref|ZP_05044743.1| integron integrase [Cyanobium sp. PCC 7001] gi|197625493|gb|EDY38052.1| integron integrase [Cyanobium sp. PCC 7001] Length = 323 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 79/311 (25%), Positives = 139/311 (44%), Gaps = 61/311 (19%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ-KIGDRS 87 R ++ T+ +YE R++L F +++ R++ E+ AF++ ++ + Sbjct: 21 RHYARRTVTTYEQWLRRYLRF--------HSLRHPREMGSAEVNAFLTHLAVDLQVSAST 72 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 ++LS + + L +R + + ++ R ++ LP L ++ +++ Sbjct: 73 QNQALSALLFLYRELLERDLEL-AGVVRARTPRR---LPVVLTVEEVRSVLQR------- 121 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR--IVP--L 202 +D + + LLYG GLR+ EAL L ++ + L ++ GKG K R ++P L Sbjct: 122 ----LDGTEALVAGLLYGSGLRLMEALRLRVHDLDFGRQELTVRNGKGGKDRRTLLPRRL 177 Query: 203 LPSVRKAILEYYDLCPFDLNLN---IQLP--LFRGIRGKP-------------------- 237 +R + E + DL +QLP L R P Sbjct: 178 AEQLRPHLQEVKSIHQQDLAEGWGRVQLPHALGRKYPHAPVEWGWQWVFPQQTRWCNPAS 237 Query: 238 -------LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290 ++P + Q+ +R+ G+ T +LRHSFATHLL G D+R+IQ +LGH Sbjct: 238 GEQGRHHMDPSLIQKAVRRAVLAAGISKPATCQSLRHSFATHLLERGQDIRTIQELLGHS 297 Query: 291 RLSTTQIYTNV 301 L TT IYT+V Sbjct: 298 DLKTTMIYTHV 308 >gi|228910970|ref|ZP_04074778.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis IBL 200] gi|228848625|gb|EEM93471.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis IBL 200] Length = 322 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 71/310 (22%), Positives = 137/310 (44%), Gaps = 30/310 (9%) Query: 8 EIVSFELLKERQNWLQNLEI------ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61 EIV F E N + ++I G K T+ Y T+ F F+ +K+ I Sbjct: 13 EIVDFIDTNEELNTERAIKIVTQAFQAEGFRKRTIDDY---TKLFRYFMRELNIDKVEII 69 Query: 62 TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121 T + ++ +I+K ++++ ++ +S +KS K L ++ + ++ L+ Sbjct: 70 TAKH-----VQMYINKLISRELAPATVNIRISALKSVFKRLHEQGYIKSNPAVDFVKLRT 124 Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 + LN Q L +T + R+ + L+ CGLR++E L ++ Sbjct: 125 DEAPIFTLNNNQI-----KRLFCVVDKTTYAGYRDYCAMLLMLHCGLRVNEVNQLEANDL 179 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP-----FDLNLNIQLPLFRGIRGK 236 D T+ + G +K R +P +K E L F++ N+ F G Sbjct: 180 DFDNLTIMLSGAKNKNRKTRAVPMTKKVAEELRMLIEESREYFEVTTNV----FLTHDGN 235 Query: 237 PLNPGVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 ++ + ++ + + ++ GL + H+LRH+FAT+ L NGG + ++ I+GH ++T Sbjct: 236 SIDNDLLRKRMYRYGQFAGLSKECRPSPHSLRHTFATNFLRNGGSVNALMRIMGHADITT 295 Query: 295 TQIYTNVNSK 304 T Y +N + Sbjct: 296 TMRYVRLNDE 305 >gi|227461189|gb|ACP39541.1| putative integron integrase [uncultured microorganism] Length = 316 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 41/189 (21%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKI-----------RI 199 +D + + + LLYG G+R+ E + L Q++ D++ + ++ GKG K R+ Sbjct: 130 MDGQVALMASLLYGTGMRLMECVRLRVQDVGFDRNEICVRNGKGGKDRRVPLPRRVRERL 189 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP---------------------- 237 + + VR IL DL + + L R G Sbjct: 190 LEQVERVR--ILHGQDLATGAGEVFLPHALARKYPGAGREFCWQYVFPSLRESKDPRSGK 247 Query: 238 -----LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 ++ GV QR ++ R G+ + HTLRHSFATHLL +G D+R++Q ++GH + Sbjct: 248 RRRHHVDEGVLQRAVKIARDKAGIDKPASCHTLRHSFATHLLESGQDIRTVQELMGHKDV 307 Query: 293 STTQIYTNV 301 STT IYT+V Sbjct: 308 STTMIYTHV 316 >gi|255322209|ref|ZP_05363355.1| hydrogenase expression/formation protein [Campylobacter showae RM3277] gi|255300582|gb|EET79853.1| hydrogenase expression/formation protein [Campylobacter showae RM3277] Length = 354 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 77/142 (54%), Gaps = 7/142 (4%) Query: 166 CGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223 G+R+SEAL+L ++I +D +RI+GKG+K R+V + R+ I + D + + Sbjct: 202 TGIRVSEALNLKRKDIAEDGELYVIRIRGKGNKYRVVMI---KRRLIEAHLDAIAINY-I 257 Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRS 282 N + LF +G L R + Q+ G+ AH LRH+FAT L DL Sbjct: 258 NKEGYLFINKKGTRLTQAYVSRIVEQILFKAGIRKEKNGAHMLRHTFATMLYKKQKDLVL 317 Query: 283 IQSILGHFRLSTTQIYTNVNSK 304 +Q LGH L+T++IYT+ +S+ Sbjct: 318 VQEALGHASLNTSRIYTHFDSE 339 >gi|262202504|ref|YP_003273712.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262202581|ref|YP_003273789.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262204533|ref|YP_003275741.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262085851|gb|ACY21819.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262085928|gb|ACY21896.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262087880|gb|ACY23848.1| integrase family protein [Gordonia bronchialis DSM 43247] Length = 324 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 73/261 (27%), Positives = 118/261 (45%), Gaps = 31/261 (11%) Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI---LNMRN----------LKKSNSLPR 127 Q + R++KR LS I +YL+ R + T + + L R+ ++ +LPR Sbjct: 75 QGLSARTIKRRLSSIAGLYEYLRIRGVVTANPVPRGLATRSPGRAVRGVPLIRAPRTLPR 134 Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 L+ QA V + L T + + A +L G GLR E L L ++ + Sbjct: 135 VLDPAQADAFVAS--LRTDRDRAMVAA-------MLLG-GLRRCEVLGLGLNDLNPGERR 184 Query: 188 LRI-QGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIR-GKPLNPGVFQ 244 + I +GKG RIVP+ A+ +Y + P D + + +G R G+PL+ Sbjct: 185 VFIAEGKGGHQRIVPISTRFFTAVTDYLNRERPQDTATDRLFVVLKGPRRGQPLSAAGLD 244 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 I RR G+ T H LRH+ T L G L +IQS GH + +T+IY ++ + Sbjct: 245 EIIAGARRRAGIE-QLTCHQLRHTCFTRLREAGMALEAIQSQAGHRSIESTRIYLHLAN- 302 Query: 305 NGGDWMMEIYDQTHPSITQKD 325 DW+ Y + +I ++ Sbjct: 303 ---DWLASEYRRAMEAIDAQN 320 >gi|315303917|ref|ZP_07874379.1| tyrosine recombinase XerD [Listeria ivanovii FSL F6-596] gi|313627714|gb|EFR96385.1| tyrosine recombinase XerD [Listeria ivanovii FSL F6-596] Length = 73 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 36/65 (55%), Positives = 44/65 (67%), Gaps = 4/65 (6%) Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ T HTLRHSFATHLL NG DLRS+Q +LGH +STTQIYT+V + ++Y Sbjct: 11 GIEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLR----LKDVY 66 Query: 315 DQTHP 319 Q HP Sbjct: 67 KQFHP 71 >gi|228950288|ref|ZP_04112465.1| hypothetical protein bthur0007_63540 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809450|gb|EEM55894.1| hypothetical protein bthur0007_63540 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 278 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 73/295 (24%), Positives = 134/295 (45%), Gaps = 33/295 (11%) Query: 24 NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT-IRQLSYTEIRAFISKRRTQK 82 N E E G S T++ Y F +L ++T + + S ++++ ++ +QK Sbjct: 9 NHEKEHGKSPETIRGYHYKLLHFEKWLG-------AVETDLYEFSRSDVQQYLDDLTSQK 61 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 ++ + I+SF ++ KK + I+ NL + P AL K+ L ++ V Sbjct: 62 KSASTVNGHYAAIRSFSQFAKKTDCIKDIRIVKAPNLYRE--APVALERKEVLRILREV- 118 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRI-QGKGDKIRI 199 + + R+ AIL G+R++E +SL +I + Q T+R+ QGKG+K RI Sbjct: 119 ------DRSGNKRDKAILLTCVYAGIRVAEIVSLDIDDISFSERQGTIRVRQGKGNKERI 172 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 +PL R AI +Y + LF R ++ +R ++ + G+ Sbjct: 173 IPLHKEARYAISDY-----LKTRESTAAALFLSNRQTRIS----KRTVQHICNKYGV--- 220 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 H RH+F T L+ G D ++IQ++ GH + Y +V ++ + + +Y Sbjct: 221 -NPHQFRHTFVTDLVDAGIDDKTIQTLTGHESPAMITRYRSVRPEDKQNAIEALY 274 >gi|225867105|ref|YP_002752483.1| site-specific recombinase, phage integrase family [Bacillus cereus 03BB102] gi|225786133|gb|ACO26350.1| site-specific recombinase, phage integrase family [Bacillus cereus 03BB102] Length = 322 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 67/284 (23%), Positives = 129/284 (45%), Gaps = 28/284 (9%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 G K T+ Y T+ F F+ ++ I + ++ ++ +I+K ++ + ++ Sbjct: 41 GFRKRTIDDY---TKLFRYFM-----RELNIDRVEIITAKHVQMYINKLISRDLAPATVN 92 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 +S +KS K L ++ T + ++ L+ + LN Q L +T Sbjct: 93 IRISALKSIFKRLHEQGYTKSNPAIDFVKLRTDEAPIFTLNNNQI-----KRLFRVVDKT 147 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSV 206 + R+ + L+ CGLR++E L ++ D T+ + G K K R VP+ V Sbjct: 148 TYAGYRDYCAMLLMLHCGLRVNEVNQLEVNDLDFDNLTIMLSGAKNKNRKTRAVPMTKRV 207 Query: 207 ----RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-- 260 R I E D F++ N+ F G ++ + ++ + + ++ GL Sbjct: 208 AEELRMLIEESRDY--FEVTTNV----FLTHDGNSIDNDLLRKRMYRYGQFAGLSKECRP 261 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + H+LRH+FAT+ L NGG + ++ I+GH ++TT Y +N + Sbjct: 262 SPHSLRHTFATNFLRNGGSVNALMRIMGHADITTTMRYVRLNDE 305 >gi|206976115|ref|ZP_03237024.1| prophage lambdaba03, site-specific recombinase, phage integrase family [Bacillus cereus H3081.97] gi|206745569|gb|EDZ56967.1| prophage lambdaba03, site-specific recombinase, phage integrase family [Bacillus cereus H3081.97] Length = 303 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 69/275 (25%), Positives = 132/275 (48%), Gaps = 14/275 (5%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 + +G ++ T+++ + +Q FL E++I+ + ++ ++ ++ + + + + Sbjct: 15 MAKGFTQKTMKNKRQEMKQLKRFLM--NEKRIS--ELEAINTLHLKQYVRTKHEEGLQPQ 70 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S+ +++F + +K + E NI L K +P+ L + + V ++ S Sbjct: 71 SIVAMSKIVRAFFSWCQKEEYLKE-NIAKKVELPK---VPKKLLKGFTVQEVSAMIEAFS 126 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 ++ +I+ARN AI+ +L CGLR E L QN+ ++ + + GKG+K RI+ + P + Sbjct: 127 YKN-YIEARNKAIVAMLSDCGLRAMEIRGLLTQNV--KETKILVNGKGNKERIMFISPPL 183 Query: 207 RKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAH 263 +K ++ Y L L I F PL+ G++ R + H Sbjct: 184 KKILIRYERLKKDYLKDRIVKTDHYFLSYTADPLSHMGIYNVIKEAGERVKIEEARCSPH 243 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 T RH FA + NG D+ ++ +LGH LSTTQ Y Sbjct: 244 TFRHFFAVQCILNGVDILTLSKLLGHGDLSTTQRY 278 >gi|92112109|gb|ABE73743.1| class 1 integron integrase [Azoarcus communis] Length = 337 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 82/327 (25%), Positives = 136/327 (41%), Gaps = 59/327 (18%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 33 TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + + S LP L + + ++ +++ Sbjct: 83 LAALLFFYGKVLCTDLTWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVRKA 209 + LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R+ Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191 Query: 210 ILEYYD--------------------------------LCPFDLNLNIQLPLFRGIRGKP 237 + D F + + P +R Sbjct: 192 LSRARDWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFLVFAQHTHSTDPRSGVVRRHH 251 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT I Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311 Query: 298 YTNVNSKNGGDWMMEIYDQTHPSITQK 324 YT+V K GG + D P +++ Sbjct: 312 YTHV-LKVGGAGVRSPLDALPPLASER 337 >gi|193214734|ref|YP_001995933.1| integron integrase [Chloroherpeton thalassium ATCC 35110] gi|193088211|gb|ACF13486.1| integron integrase [Chloroherpeton thalassium ATCC 35110] Length = 355 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 83/321 (25%), Positives = 137/321 (42%), Gaps = 67/321 (20%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRS 87 R SK T ++Y +QF+ F ++ + +S EI AF++ +K + Sbjct: 35 RPYSKRTQKAYCYWVKQFVYFY--------QLRHPKDMSEPEINAFLTHLAVEKKVSASP 86 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 ++LS + +++ +++ +++ R K LP L ++ V +VL Sbjct: 87 QNQALSALLFLYRHVIGKELGDLGHVIRAR---KPIRLPVVLTREE----VKSVLTGLKA 139 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206 E KW+ A L+YG GLR+ E L L +I ++ + I+ GKG K R+ L S+ Sbjct: 140 E-KWLMAS------LMYGSGLRLMECLQLRIHDIDFSRNEIPIRDGKGAKDRLTMLPESL 192 Query: 207 RKAILEY----------------------------YDLCPFDLNLNIQLPLFRGIRGKPL 238 +K + ++ Y P + P + R K Sbjct: 193 KKPLADHLKRVKRIHDKDLADGWGRVILPNALDRKYPNAPAEWRWQWVFP--QENRWKNT 250 Query: 239 NPG----------VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288 N G + Q+ + + R GL T HT RHSFATHLL +G D+R+IQ +LG Sbjct: 251 NTGEEGRHHVHESIIQKAVTRAVRKAGLTKRATCHTFRHSFATHLLESGYDIRTIQELLG 310 Query: 289 HFRLSTTQIYTNVNSKNGGDW 309 H + T Y ++ S N W Sbjct: 311 HKNVET---YNDLYSCNQSRW 328 >gi|291276943|ref|YP_003516715.1| DNA recombinase [Helicobacter mustelae 12198] gi|290964137|emb|CBG39982.1| DNA recombinase [Helicobacter mustelae 12198] Length = 354 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/158 (34%), Positives = 81/158 (51%), Gaps = 15/158 (9%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211 R+ AI+ L+ G+RISEAL L +++ D L ++GKGDK R++ + P V + L Sbjct: 189 CRDRAIIKLIIYTGMRISEALYLGLKDLRLEGDFYLLNVRGKGDKTRVLMVRPRVLQEDL 248 Query: 212 EYYDLCPFDLNLNIQLP------LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHT 264 + + L ++P LF G PL+ R + + +Y G+ AH Sbjct: 249 KQW------LTERAKIPTIEHHLLFCNKHGAPLSQAYIYRMVDSILQYAGIKKEKMGAHM 302 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 LRHSFAT L DL +Q LGH L T++IYT+ + Sbjct: 303 LRHSFATLLYQKHKDLILVQETLGHASLDTSRIYTHFD 340 >gi|227461205|gb|ACP39547.1| putative integron integrase [uncultured microorganism] Length = 288 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 86/180 (47%), Gaps = 37/180 (20%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAIL------ 211 + LLYG GLR+ E L++ +++ + L ++ GKG K R+ L S+R ++ Sbjct: 109 VASLLYGSGLRLHEGLTVRVKDLDFARRELVVRNGKGQKDRVTLLPESLRDPLVGHLTRL 168 Query: 212 -EYYD----------LCPFDLNLNIQLP--------LF--RGIRGKP---------LNPG 241 E+++ PF L LF I P L+PG Sbjct: 169 REWFENERRQKRPGVSLPFALAKKYPAASVSWGWQYLFPSASICADPYSRLPVRHHLHPG 228 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 QR + + R GL + HT RHSFATHLL +G D+R++Q +LGH + TT IYT+V Sbjct: 229 TVQRGVARAVRAAGLAKPASCHTFRHSFATHLLDSGYDIRTVQELLGHSNVKTTMIYTHV 288 >gi|32471153|ref|NP_864146.1| integrase [Rhodopirellula baltica SH 1] gi|32396855|emb|CAD71823.1| integrase [Rhodopirellula baltica SH 1] Length = 227 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 106/233 (45%), Gaps = 27/233 (11%) Query: 65 QLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 +LS ++R ++ RR Q ++G S+ I LK+ + + + L L KSN Sbjct: 11 KLSEAQVRQYVLLRRQQLQLG------SMRPIVGALKFFFRVTVPRDWPTLQAVRLPKSN 64 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 +LP+ L ++ L+D + SH I +Y CGLR + L PQ++ Sbjct: 65 TLPKVLVPERCWQLIDATV--ASHL--------QVIFRAMYSCGLRGVDVRHLRPQDVDA 114 Query: 184 DQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR-----GIRGKP 237 D+ LR+ KG + R VPL + A ++ N N P + +P Sbjct: 115 DRMMLRVCTTKGHRQREVPLPQATLDAFRAHWAT---HRNPNWLFPATQRNTPASKADQP 171 Query: 238 LNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGH 289 ++ QR ++ LG S T HTLRHS+AT +L G +L+ +Q LGH Sbjct: 172 ISARTIQRGFTKVTESLGWQDSGLTPHTLRHSYATAMLDAGVNLKVLQGYLGH 224 >gi|78224199|ref|YP_385946.1| integron integrase [Geobacter metallireducens GS-15] gi|78195454|gb|ABB33221.1| Integron integrase [Geobacter metallireducens GS-15] Length = 334 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 87/182 (47%), Gaps = 37/182 (20%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYD----L 216 L+YG G+R+ E + L +++ ++S + + +GKG K RI L +V + E+ L Sbjct: 143 LMYGTGMRLMETVRLRVKDVDFERSEIIVREGKGAKDRITMLPQAVAAPLREHLGRVEAL 202 Query: 217 CPFDLNLNI-QLPLFRGIRGKPLNPG-------VF------------------------Q 244 DL ++ L + K N G VF Q Sbjct: 203 HGADLRAGFGEVHLPHALGKKYPNAGREWGWQYVFPAKQLSTDPRTGVTRRHHADEKGIQ 262 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 R IRQ R L T HTLRHSFATHLL +G D+R++Q +LGH + TT IYT+V ++ Sbjct: 263 RAIRQAVRDAELAKPATPHTLRHSFATHLLQSGYDIRTVQELLGHKDVQTTMIYTHVLNR 322 Query: 305 NG 306 G Sbjct: 323 GG 324 >gi|227461184|gb|ACP39539.1| putative integron integrase [uncultured microorganism] Length = 317 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 78/306 (25%), Positives = 127/306 (41%), Gaps = 58/306 (18%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 33 TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 83 LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207 + LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191 Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +A + F + + P +R Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT I Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311 Query: 298 YTNVNS 303 YT+V S Sbjct: 312 YTHVGS 317 >gi|188585853|ref|YP_001917398.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350540|gb|ACB84810.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 305 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 65/304 (21%), Positives = 138/304 (45%), Gaps = 15/304 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q+++++ E + L++ T+ Y ++F F++ +E + + Q + I++++ Sbjct: 8 QDFIEDREF-KNLTQKTISGYSATLKEFQEFIS--EQEVVNANDVTQ---SHIKSYLLHC 61 Query: 79 RTQKIGD-RSLKRSLSGIKSFLKYLKKRKITTES-NILNMRNLKKSNSLPRALNEKQALT 136 + K + S+ L +K F YL+ ++ +E N N K + N+ Q Sbjct: 62 KKNKNNNPTSINHKLHNLKIFFNYLQDIEVISEKQNPAKKINYVKEDIKIEVFNDYQIKQ 121 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 ++D E + RN I+ L G G R+ E ++L +I +T+ GK + Sbjct: 122 MLDYYRRIKRREKGFYAYRNYTIIVFLLGTGSRLGELINLRWDDIDFINNTIVFYGKKRE 181 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +P+ ++K ++EY C ++ +F + + L + ++L++ + Sbjct: 182 YSSIPMTEKLKKELMEYKTYCEQTFE-SLSEYVFTNRKNEKLTDNAVKCIFKRLKKVMNF 240 Query: 257 P-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + + HT RH+FA +++ N D+ ++Q +L H LS + Y N G + E D Sbjct: 241 KNVRVSCHTFRHTFAVNMIKNNCDIFTLQKMLRHKDLSMCRRYVNF-----GTALKEQND 295 Query: 316 QTHP 319 + +P Sbjct: 296 KFNP 299 >gi|13475380|ref|NP_106944.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|14026132|dbj|BAB52730.1| integrase/recombinase [Mesorhizobium loti MAFF303099] Length = 302 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 82/153 (53%), Gaps = 2/153 (1%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEY 213 ++ A L + YG GLR++E +L +I ++ +R++ GKG + R L + + ++ Sbjct: 127 KHQAALSVAYGAGLRVAEVSALKVADIDSERMLIRVERGKGGRYRNAMLSQDLLLLLRQW 186 Query: 214 YDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 + + ++ LF G KP++ R + + + + HTLRHSFATH Sbjct: 187 WKVGRQQGVMHRDGWLFPGQHAMKPISTRQLYRVVVEAAQAADIAKRVGPHTLRHSFATH 246 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 LL +G D+R IQ +LGH +L++T YT V ++ Sbjct: 247 LLEDGTDIRIIQVLLGHAKLNSTAFYTKVATRT 279 >gi|183220599|ref|YP_001838595.1| putative integrase/recombinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910707|ref|YP_001962262.1| site-specific recombinase XerD [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775383|gb|ABZ93684.1| Site-specific recombinase XerD [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779021|gb|ABZ97319.1| Putative integrase/recombinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 298 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 77/148 (52%), Gaps = 9/148 (6%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDL 216 +I LLY G+RI E LSL +I ++ + I+ GKG R L + +Y ++ Sbjct: 120 SIFTLLYSSGIRIGEGLSLQLSDIDFERKAIFIRSGKGGHGRYAILADKTALLLRQYLEI 179 Query: 217 CPFDLNLNIQLPLFRGIRGK--PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 N + LF +GK P++P Q +++R + T HTLRHSFATHLL Sbjct: 180 ------YNPKSYLFFSQKGKNIPISPRTIQAAFQKIRNLSKIQKYATVHTLRHSFATHLL 233 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVN 302 +G L IQ +LGH + +T IY +V+ Sbjct: 234 EDGYSLVYIQKLLGHADIKSTMIYLHVS 261 >gi|91786616|ref|YP_547568.1| phage integrase [Polaromonas sp. JS666] gi|91695841|gb|ABE42670.1| phage integrase [Polaromonas sp. JS666] Length = 331 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 73/299 (24%), Positives = 130/299 (43%), Gaps = 37/299 (12%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L++L ER L+ T +SY Q L F++ + + + +S +R F+S T Sbjct: 16 LEHLVSERNLAANTRRSYRDTMCQLLPFVSGRLHKAVDRLAVVDVSPQLVREFLSDVETH 75 Query: 82 K-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD- 139 + G + + L+ I + +++ E + ++ + +P + ++ +D Sbjct: 76 RGCGIATRNQRLAAIHALARFVG------EHSPEHIAWCAQVRCVPYKKGTQASVPYLDK 129 Query: 140 ---NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 + LL + R+ A+L LY G R SEA L ++ DQ+++ I GKG K Sbjct: 130 AEIDALLACPNRRTEQGGRDYALLLFLYNTGARASEASELIVGDLHLDQASVDILGKGRK 189 Query: 197 IRIVPLLPS----VRKAILEYYDLCPFDLNLNIQLPLFRGI---------RGKPLNPGVF 243 R PL P+ +R + E LN Q G+ R K P + Sbjct: 190 RRQCPLWPATVRELRALVGERSRHEHVFLNRCGQPTTRFGVHALVERTAARAKDFMPSLA 249 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + + + H++RHS A+HLLS G D+ ++++ LGH L TT +Y ++ Sbjct: 250 MKRV-------------SPHSIRHSTASHLLSAGVDINTVRAWLGHASLDTTNVYAEID 295 >gi|170293805|gb|ACB12942.1| putative site specific tyrosine recombinase [Thauera sp. E7] Length = 282 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 7/150 (4%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRI-QGKGDKIRIVPLLPSVRKAIL 211 R +L Y GLR+SE +L +I D+ +R+ GKG K R L PS+ +A+ Sbjct: 119 RARTLLMTAYAAGLRVSEVCALRVADIDSAPDRMCIRVVAGKGGKDRYTLLSPSLLEALR 178 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 Y+ +C + L +P + QR + R G+ + HTLRH+FAT Sbjct: 179 VYWRIC----KPRVWLFPRATDAAQPYDISSAQRAYYRARDRAGITKTGGIHTLRHAFAT 234 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 HLL G DL ++ +LGH LSTTQ Y ++ Sbjct: 235 HLLEAGVDLATLAKLLGHGHLSTTQRYLHL 264 >gi|78045912|ref|YP_362087.1| putative integrase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034342|emb|CAJ21987.1| putative integrase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 349 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 86/178 (48%), Gaps = 39/178 (21%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYD----- 215 LLYG G+R+ E L L +++ + + ++ GKG K R VP S+R +++ + Sbjct: 165 LLYGSGMRLLECLRLRIKDVDVVRGEIVVRDGKGGKDRRVPPPHSLRGELMQQRERALLL 224 Query: 216 ------------LCPFDL-----NLNIQLP---LFRGIRGKPLNP------------GVF 243 P L N N++ LF R + ++P V Sbjct: 225 HAADLAEGAGRVFLPHALARKYPNANVEPGWQYLFLAAR-RSVDPRSGRVGRHHVSEEVL 283 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 QR ++ RR G+ T HTLRHSFATHLL G D+R++Q +LGH ++T QIY +V Sbjct: 284 QRAVQSARRQAGIAKPATCHTLRHSFATHLLEAGHDIRTVQELLGHKDVTTKQIYAHV 341 >gi|325929257|ref|ZP_08190393.1| integron integrase [Xanthomonas perforans 91-118] gi|60550151|gb|AAX24163.1| truncated integrase [Xanthomonas perforans] gi|60550154|gb|AAX24165.1| truncated integrase [Xanthomonas perforans] gi|325540396|gb|EGD12002.1| integron integrase [Xanthomonas perforans 91-118] Length = 315 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 86/178 (48%), Gaps = 39/178 (21%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYD----- 215 LLYG G+R+ E L L +++ + + ++ GKG K R VP S+R +++ + Sbjct: 131 LLYGSGMRLLECLRLRIKDVDVVRGEIVVRDGKGGKDRRVPPPHSLRGELMQQRERALLL 190 Query: 216 ------------LCPFDL-----NLNIQLP---LFRGIRGKPLNP------------GVF 243 P L N N++ LF R + ++P V Sbjct: 191 HAADLAEGAGRVFLPHALARKYPNANVEPGWQYLFLAAR-RSVDPRSGRVGRHHVSEEVL 249 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 QR ++ RR G+ T HTLRHSFATHLL G D+R++Q +LGH ++T QIY +V Sbjct: 250 QRAVQSARRQAGIAKPATCHTLRHSFATHLLEAGHDIRTVQELLGHKDVTTKQIYAHV 307 >gi|88857306|ref|ZP_01131949.1| site-specific recombinase IntI4 [Pseudoalteromonas tunicata D2] gi|88859550|ref|ZP_01134190.1| site-specific recombinase IntI4 [Pseudoalteromonas tunicata D2] gi|88818567|gb|EAR28382.1| site-specific recombinase IntI4 [Pseudoalteromonas tunicata D2] gi|88820503|gb|EAR30315.1| site-specific recombinase IntI4 [Pseudoalteromonas tunicata D2] Length = 323 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 63/185 (34%), Positives = 82/185 (44%), Gaps = 39/185 (21%) Query: 162 LLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAI---------- 210 LLYG GLR+ EA+ L I D S + GKG K R V L P + A+ Sbjct: 130 LLYGSGLRLMEAVRLRVAAIDFDYLSIMVWHGKGGKHRRVTLAPELVPALKRQTSLVEAY 189 Query: 211 ----LEYYDLC----PFDL---------NLNIQLPLFRG----------IRGKPLNPGVF 243 LE D PF L L Q G +R ++ Sbjct: 190 YQQDLETADYAGVWLPFALARKYPSAPKELGWQYLFPSGKLSIDPDSTLLRRHHIDESGL 249 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 Q+ ++ R + + HTLRHSFATHLL G D+R++Q LGH + TTQIYT+V Sbjct: 250 QKAVKSASRKAAIGKHVSCHTLRHSFATHLLQAGMDIRTVQEQLGHSDVKTTQIYTHV-L 308 Query: 304 KNGGD 308 K GG+ Sbjct: 309 KQGGN 313 >gi|197336974|ref|YP_002158308.1| site-specific recombinase IntIA [Vibrio fischeri MJ11] gi|197314226|gb|ACH63675.1| site-specific recombinase IntIA [Vibrio fischeri MJ11] Length = 327 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 106/226 (46%), Gaps = 50/226 (22%) Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173 L + KK+ LP + +A+++++ + +H TK I L+YG GLRI+EA Sbjct: 99 LEFKRSKKATKLPTVFSHSEAISVINEL----NHPTKLI-------AQLMYGSGLRINEA 147 Query: 174 LSLTPQNIMDDQSTLRIQ-GKGDKIR-------IVPLLPSVRKAILEYYDLCPFDLNLNI 225 L L +I T+ I+ GKG+K R I+ L + + + + + + + + Sbjct: 148 LRLRVDDIDLIHKTITIRNGKGNKDRTTVLPEIIISELKTQLAFVKQQHKVDAINGDDEV 207 Query: 226 QLP------------------LF--RGIRGKP----------LNPGVFQRYIRQLRRYLG 255 LP +F + I P L+ V Q+ + + L Sbjct: 208 YLPNAIAKKYPHRAKSYGWQYVFPSKQISKDPRSGQRRRHHMLDRSV-QKQVTNAIKKLE 266 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + ++HT RHSFAT +L GGDLR+IQ +LGH + TTQIYT+V Sbjct: 267 IDKKASSHTFRHSFATRILERGGDLRTIQELLGHSDIKTTQIYTHV 312 >gi|331269495|ref|YP_004395987.1| integrase/recombinase [Clostridium botulinum BKT015925] gi|329126045|gb|AEB75990.1| integrase/recombinase, putative [Clostridium botulinum BKT015925] Length = 274 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 76/275 (27%), Positives = 124/275 (45%), Gaps = 39/275 (14%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 S+ T+ SY D QF +L T +K ++ I+ E + F+ + KI +++ R Sbjct: 18 SEKTIDSYIRDISQFNDYLK--TNKKKLVK-IKLSDIDEFKNFLIYDKELKI--KTINRK 72 Query: 92 LSGIKSFLKY------LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 L I +LK+ +K+ K+ ++ + +M + + + +A K Sbjct: 73 LVSINQYLKFNNISVDIKQEKVQMQNFLDDMLSNQDIEDIIKATYAKD------------ 120 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 D R I+Y LY G+R+SE L LT + +S++ I GKG K R V +P+ Sbjct: 121 -------DVRARTIIYTLYYTGMRVSEMLQLTIYDTK--KSSISIIGKGSKHREV-FVPN 170 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHT 264 K I + Y + + LF G RG P+N I+ G+ S AH Sbjct: 171 KLKTIWDNY----MQVRIKKSTALFTGKRG-PINRKTVDSIIKTYAETAGVDKSKAHAHN 225 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 RH + +L G D+ +I I GH ++TT+IYT Sbjct: 226 FRHLYCKNLADRGIDISTIADIAGHQNINTTRIYT 260 >gi|301057343|ref|ZP_07198461.1| integron integrase [delta proteobacterium NaphS2] gi|300448573|gb|EFK12220.1| integron integrase [delta proteobacterium NaphS2] Length = 326 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 61/181 (33%), Positives = 84/181 (46%), Gaps = 39/181 (21%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSV---------- 206 ++ LLYG GLR EAL L +I D Q T+R GKG+K R+ P S+ Sbjct: 130 VVKLLYGSGLRAMEALRLRVHDIDYDLRQITVR-SGKGNKDRVTPFPVSLAPLLQSHLTR 188 Query: 207 -----RKAILEYYDLCPFDLNLNIQLP----------LFRG-----------IRGKPLNP 240 K I + Y L + P +F R ++P Sbjct: 189 VKAIHEKDITDGYGAVYLPYALERKYPNAAKEWQWQYIFPSGSLSRDPESGRTRRHHIDP 248 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 V + I+ + G+ ++HT RHSFATHLL G D+R+IQ++LGH LSTT IYT+ Sbjct: 249 SVINKAIKAAAKRAGIHKRISSHTFRHSFATHLLERGTDIRTIQTLLGHSDLSTTMIYTH 308 Query: 301 V 301 V Sbjct: 309 V 309 >gi|284008020|emb|CBA74104.1| phage integrase [Arsenophonus nasoniae] Length = 318 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 61/213 (28%), Positives = 98/213 (46%), Gaps = 11/213 (5%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 L IK + + ++ N +++N+K+ + T + ++ +T Sbjct: 90 LCAIKGVAEEARASRLMDADNYHDVKNIKRIRGARISRGRMLECTEIKHLFTFLDIQTTG 149 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211 R++A++ L++GCGLR SE L +I + + + I GKG+K RI + P K + Sbjct: 150 AAIRDAALISLMFGCGLRRSEVADLDIDHIDFENNKIDIHGKGNKERINYMPPETAKRMS 209 Query: 212 EYYDLCPFDLNLNIQLPLFRGIR------GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + D D + PLF IR L I+QL L L L T H L Sbjct: 210 LWVDTVRGDHS----GPLFTRIRKNDDVTSDRLTTNGIGFIIKQLVTKLSLKL-FTPHDL 264 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 R S+A+ LL NG D+ +++ LGH + TTQ Y Sbjct: 265 RRSYASLLLENGEDILTVKEALGHASVVTTQQY 297 >gi|208972754|gb|ACI32876.1| IntI2 [Escherichia coli] Length = 325 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 64/189 (33%), Positives = 89/189 (47%), Gaps = 41/189 (21%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR--IVP--LLPSV 206 +D RN I LLYG GLRI+E L L ++ D + + GKG K R ++P L+P + Sbjct: 118 MDTRNQVIFALLYGAGLRINECLRLRVKDFDFDNGCITVHDGKGGKSRNSLLPTRLIPVI 177 Query: 207 RKAILEYYDLCPFDLNL---NIQLPLFRGIRGKP-------------------------- 237 K ++E L D NL LP F R P Sbjct: 178 -KQLIEQARLIQQDDNLQGVGPSLP-FALDRKYPSAYRQAAWMFVFPSSTLCNHPYNGKL 235 Query: 238 ----LNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 L+ V ++ ++ + G+ T HT RHSFATHLL G D+R++Q +LGH + Sbjct: 236 CRHHLHDSVARKALKAAVQKAGIVSKRVTCHTFRHSFATHLLQAGRDIRTVQELLGHTDV 295 Query: 293 STTQIYTNV 301 TTQIYT+V Sbjct: 296 KTTQIYTHV 304 >gi|254827675|ref|ZP_05232362.1| tyrosine recombinase XerC subunit [Listeria monocytogenes FSL N3-165] gi|258600054|gb|EEW13379.1| tyrosine recombinase XerC subunit [Listeria monocytogenes FSL N3-165] Length = 291 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 74/264 (28%), Positives = 116/264 (43%), Gaps = 34/264 (12%) Query: 69 TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR- 127 E R +S R ++ ++ ++ IK F YL K N + +K + S P+ Sbjct: 47 VEYRKILSSMR-NRLSKNTMYSYVNVIKRFYDYLIDFKFYNGKNPFSSSVVKITASKPKN 105 Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILY------LLYGCGLRISEALSLTPQNI 181 L E + L + K D + Y LY G+R++E ++L + Sbjct: 106 VLYEDEILDIY-----------KIFDMEDKTTGYQEFLFDFLYSTGIRLAEFINLNIYDF 154 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR---GKPL 238 + + + GKG+K RIV S+ + +L Y + + + + I G+ L Sbjct: 155 DFENRVITVVGKGNKERIVVYNESLEQTMLSYLKARQAIMKFHRKSHSYFLIDFNTGQRL 214 Query: 239 NPG-VFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 V+ IR +G + H LRHSFATHLL NG DLR IQ +LGH +STT Sbjct: 215 KAARVYNEIIR-----VGDIVHRKIHPHMLRHSFATHLLENGCDLRYIQELLGHSSVSTT 269 Query: 296 QIYTNVNSKNGGDWMMEIYDQTHP 319 +IYT V K + +++ HP Sbjct: 270 EIYTKVQLKQKQNTILKF----HP 289 >gi|153000221|ref|YP_001365902.1| phage integrase family protein [Shewanella baltica OS185] gi|151364839|gb|ABS07839.1| phage integrase family protein [Shewanella baltica OS185] Length = 296 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 54/155 (34%), Positives = 82/155 (52%), Gaps = 14/155 (9%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAIL 211 R LY GLR+ EA+SL +I D +++ KG K R+VPL P L Sbjct: 125 RYQVCFLTLYSMGLRLGEAISLQVGDI--DAGLMQVHIRDAKGGKDRLVPL-PQRTLLAL 181 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKP---LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 YY + + + + LF G +P ++ G Q+ ++Q+ + + + H+LRHS Sbjct: 182 RYY----WRTHRHPRW-LFPGKDNQPDSLMDRGGLQKAMKQVIAECNIHKAISPHSLRHS 236 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 +ATHLL G DLRS+Q++LGH L+TT YT + Sbjct: 237 YATHLLEQGLDLRSVQTLLGHHSLNTTARYTRLTD 271 >gi|116622414|ref|YP_824570.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116626674|ref|YP_828830.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116225576|gb|ABJ84285.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116229836|gb|ABJ88545.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 412 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 79/285 (27%), Positives = 122/285 (42%), Gaps = 28/285 (9%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKI--TIQTIRQLSYTEIRAFISKRRTQKIGD 85 ERGLS TL Y QFL E+ + + + T + F+ R +++ Sbjct: 130 ERGLSPSTLLHYVPVAEQFL-------AERFHNAVPSFAMIRATHVTGFV-LRHARQLSP 181 Query: 86 RSLKRSLSGIKSFLKYLKKRKITT---ESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 ++ ++SF +YL+ R + + + + N S +LPR L + Sbjct: 182 VRAGLMVTALRSFFRYLRHRGVIATDLAACVPTVPNWSLS-TLPRFLPAAAV-----ERI 235 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202 L T + RN IL LL G+R E + L+ +I + I+GKG K +PL Sbjct: 236 LECCDRTTSVGRRNHTILLLLARLGVRAGEVVGLSLDDIDWSTGQITIRGKGGKSAQLPL 295 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL----NPGVFQRYIRQLRRYLGLPL 258 + V A+ +Y D + +F R PL N +R+ ++ G+ Sbjct: 296 VNDVGSALADYLR---HDRPRSATRRVFLRHRA-PLVGFGNSSTISSLVRRALKHAGVES 351 Query: 259 S-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + T AH LRHS AT LL GG L I +L H +TT IY V+ Sbjct: 352 AHTGAHVLRHSLATSLLRQGGSLDEIGELLRHQSPNTTAIYAKVD 396 >gi|134298831|ref|YP_001112327.1| phage integrase family protein [Desulfotomaculum reducens MI-1] gi|134051531|gb|ABO49502.1| phage integrase family protein [Desulfotomaculum reducens MI-1] Length = 324 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 71/277 (25%), Positives = 127/277 (45%), Gaps = 33/277 (11%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 GLS+ T+ Y R+ ++ A Y + +++++ +IR ++S R I +++ Sbjct: 63 GLSEKTIDKY----RKTILDFAKYVN-----KPLKRITTADIRTWLSNR---DIKISTVR 110 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD--NVLLHTSH 147 L+ ++SF YL +I +++ K +P+ALN + L + N L Sbjct: 111 YRLAVLRSFYNYLLAEEIVAVDPTRRIKSPKLEKRIPKALNNDELEVLREGCNTL----- 165 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207 R A+L + Y G RI E +I + +L + GKG+K RIV + Sbjct: 166 -------REKALLEIFYATGCRIGEVFGANKIDINWQERSLVVLGKGNKERIVFIGARAA 218 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGK--PLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 ++ +Y + + + LF +GK L+ Q +++ + + + H Sbjct: 219 HSLKKY-----LNSRQDNEDALFVTEKGKIQRLSVRSIQLIFKKIANRVVIHKNIYPHIF 273 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 RH+ AT LL++G L +Q +LGH STTQIY V+ Sbjct: 274 RHTLATALLNHGARLEDVQDLLGHTNPSTTQIYCKVS 310 >gi|89147375|gb|ABD62548.1| integrase [uncultured bacterium] Length = 163 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 35/69 (50%), Positives = 47/69 (68%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 +R ++P V QR +R R G+ T HTLRHSFATHLL +G D+R++Q +LGH + Sbjct: 94 VRRHHVDPQVIQRALRDALRRAGISKPATPHTLRHSFATHLLESGYDIRTVQELLGHKDV 153 Query: 293 STTQIYTNV 301 STT IYT+V Sbjct: 154 STTMIYTHV 162 >gi|310695289|gb|ADP05693.1| putative integrase [uncultured microorganism] Length = 319 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 78/277 (28%), Positives = 129/277 (46%), Gaps = 54/277 (19%) Query: 64 RQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL-NMRNLKK 121 R++ E+ F+++ + K+ + ++LS L +L ++ + E + N+R K+ Sbjct: 58 REMGAVEVEWFLTELAVKGKVAASTQNQALSA----LLFLYRKVLGQELPWMENIRRAKR 113 Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 + LP L + V +L S T + + LLYG GLR+ E + L Q++ Sbjct: 114 PDRLPIVLTFDE----VSRILGRMSGTTHLMAS-------LLYGSGLRLMECVRLRVQDV 162 Query: 182 -MDDQSTLRIQGKGDKIR--IVPLLPS-------VRKAILEYYDLCPFDLNLNIQLPLFR 231 + + L GKG K R ++P++ + ++ IL DL ++ + L R Sbjct: 163 DLLRREILVRHGKGGKDRRTVLPIMVAAAFQAHLIQIRILHERDLQAGHGDVWLPSALER 222 Query: 232 GI---------------RGKPLNP--GV----------FQRYIRQLRRYLGLPLSTTAHT 264 R + ++P GV QR +R + G+ T HT Sbjct: 223 KYPNAAREWIWQYAFPSRSRSIDPRSGVERRHHVDEKTLQRAVRIAVQAAGIDKPATCHT 282 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 LRHSFATHLL +G D+R+IQ +LGH +STT IYT+V Sbjct: 283 LRHSFATHLLESGSDIRTIQGLLGHSDVSTTMIYTHV 319 >gi|299538024|ref|ZP_07051310.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1] gi|298726606|gb|EFI67195.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1] Length = 298 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 60/211 (28%), Positives = 94/211 (44%), Gaps = 14/211 (6%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKK-SNSLPRALNEKQALTLVDNVLLHTSHETK 150 LS + SF K+ +S ++ R + K LPR L E++ ++ Sbjct: 87 LSILSSFFKFCLAEDYM-DSIVMRKRWVPKLPQPLPRFLTEQE--------YARVKMASE 137 Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210 + R+ AI+ L+ G R SE +L QN+ Q T ++GKG KIR V + Sbjct: 138 QLSLRDRAIVLFLFTSGCRRSEVANLLIQNVDVKQRTAEVRGKGKKIRKVHFSVECALVL 197 Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 +Y + + PLF G+ L +L R GL S H RH+FA Sbjct: 198 KDYL----WTRSGVATEPLFLNKYGEKLQQSGIYEITTKLGRLAGLEQSLHPHCCRHTFA 253 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T++L+ G +L I +GH L+TT++Y + Sbjct: 254 TNMLAKGAELEFIADEMGHTNLNTTRVYARI 284 >gi|66044755|ref|YP_234596.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] gi|63255462|gb|AAY36558.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] Length = 319 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 71/290 (24%), Positives = 124/290 (42%), Gaps = 31/290 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W N++ R T ++Y+ D + F F+ E+ R ++ + A+ ++ Sbjct: 32 WFANIDNPR-----TRRAYQIDLQDFCSFVGLAGAEEF-----RAVTRAHVLAWRARLEK 81 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVD 139 + + +++R L+ + S +L E+N + N PR NE + L D Sbjct: 82 RGLAGATIRRKLAALASLFDHL------LENNAVAGGNPVHGVKRPRIESNEGKTPALAD 135 Query: 140 N---VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194 + LL R+ A+L +L GLR E L ++ + + LR+ GKG Sbjct: 136 HQAKALLDAPPADSLKGLRDRAVLAVLLYHGLRREEGAQLKTSDLQERRGIKHLRVNGKG 195 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 K+R +PL P + I Y + DL LFR +RG+ G+ I ++ + Sbjct: 196 GKLRWLPLHPVAAERIYAYMEK---DLERGAGNGSLFRSLRGRASGTGLSADGIYKIVCH 252 Query: 254 LGLPLST-----TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + H LR + AT+ L + D+ +Q LGH +STT++Y Sbjct: 253 WAMSAGIKVDGLGVHGLRATAATNALEHDADIAKVQIWLGHANISTTRLY 302 >gi|88812879|ref|ZP_01128123.1| Integron integrase [Nitrococcus mobilis Nb-231] gi|88789801|gb|EAR20924.1| Integron integrase [Nitrococcus mobilis Nb-231] Length = 194 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 85/182 (46%), Gaps = 37/182 (20%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVP--LLPSVRK-------- 208 LLYG GLR+ E + L +++ D+ + + +G D++ ++P + PS+ + Sbjct: 4 LLYGAGLRLLECVRLRVKDVELDRRQIVVRDRKGGRDRVTLLPESMRPSLEEQIDRVREI 63 Query: 209 ----------------AILEYYDLCPFDLNLNIQLPLFR-------GIRGKP-LNPGVFQ 244 A+ Y P + P + G G+ + P Q Sbjct: 64 HNQDLADGFGAVWLPHALARKYPNAPREFGWQYMFPSAKRSTDPRSGRVGRHHIEPKSLQ 123 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 R ++Q R G+ + HT RHSFATHLL G D+R+IQ +LGH ++TT IYT+V + Sbjct: 124 RAVKQAVRAAGVSKPASCHTFRHSFATHLLEAGYDIRTIQELLGHRDVNTTMIYTHVANC 183 Query: 305 NG 306 G Sbjct: 184 GG 185 >gi|294141273|ref|YP_003557251.1| site-specific recombinase, phage integrase family [Shewanella violacea DSS12] gi|294141423|ref|YP_003557401.1| site-specific recombinase, phage integrase family [Shewanella violacea DSS12] gi|293327742|dbj|BAJ02473.1| site-specific recombinase, phage integrase family [Shewanella violacea DSS12] gi|293327892|dbj|BAJ02623.1| site-specific recombinase, phage integrase family [Shewanella violacea DSS12] Length = 296 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 53/151 (35%), Positives = 78/151 (51%), Gaps = 14/151 (9%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAIL 211 R LY GLR+ EA+SL +I D +++ KG K R+VPL +A+ Sbjct: 125 RYQVCFLTLYSMGLRLGEAISLRVGDI--DSQIMQVHIRNAKGGKDRLVPLPKRTLQALR 182 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKP---LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 Y+ + LF G +P ++ G Q+ ++++ + S + H LRHS Sbjct: 183 YYWK------THHHPRYLFPGKDSQPDSLIDKGGIQKALKRVIGECNIHKSISPHNLRHS 236 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 +ATHLL G DLRS+QS+LGH L+TT YT Sbjct: 237 YATHLLEQGLDLRSVQSLLGHNSLNTTARYT 267 >gi|190015612|ref|YP_001967367.1| site-specific tyrosine recombinase XerS [Bacillus cereus] gi|208702064|ref|YP_002267276.1| integrase/recombinase, phage integrase family [Bacillus cereus H3081.97] gi|217956900|ref|YP_002335996.1| site-specific tyrosine recombinase XerS [Bacillus cereus AH187] gi|229142253|ref|ZP_04270775.1| Integrase [Bacillus cereus BDRD-ST26] gi|116584519|gb|ABK00636.1| phage integrase family protein [Bacillus cereus] gi|208657919|gb|ACI30289.1| integrase/recombinase, phage integrase family [Bacillus cereus H3081.97] gi|217068588|gb|ACJ82836.1| integrase/recombinase, phage integrase family [Bacillus cereus AH187] gi|228641191|gb|EEK97500.1| Integrase [Bacillus cereus BDRD-ST26] Length = 361 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 86/332 (25%), Positives = 137/332 (41%), Gaps = 45/332 (13%) Query: 16 KERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFL-----AFYTEEKIT------IQT 62 K + W ++ E++ LS TL +Y + +FL +L A + +T I T Sbjct: 17 KNKMPWYIIEYAEMKTALSPATLYAYITEYEKFLKWLVNNRLAVDNGKVVTDICDVPITT 76 Query: 63 IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122 + L E R+F + + I R++ R+ S +KS KYL + RN+ + Sbjct: 77 LETLPLNEARSFQRYLQGEGIETRAINRTFSALKSLFKYLAQNTENEHGENYISRNVMEK 136 Query: 123 NSLPRA---------------LNEKQALTLVDNVLLHTSHETKWID-----------ARN 156 L + NEK + + + K I R+ Sbjct: 137 IELHKEKVDAAARADDVANMIFNEKDDVAFLQFLANDYGEMLKDISPRKYSFFQRDKERD 196 Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 AI+ L+ G GLR+SE SLT +I Q T+++ KG+K + S + EY + Sbjct: 197 IAIISLILGTGLRVSEVASLTISSINFRQGTVKVTRKGNKRSSILATRSCLDDVQEYIKV 256 Query: 217 CPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQL--RRYLGLPLSTTAHTLRHSFATH 272 P N N L +GK V R I++L + + H LRH++AT+ Sbjct: 257 RPSKYNCPENEDLLFVTNYKGKFTQLTV--RAIQKLIDKYTSAFDEKRSPHKLRHTYATN 314 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 DL ++ LGH + T IYTN+N+K Sbjct: 315 HYKENKDLVLLRDQLGHTSVEVTSIYTNINNK 346 >gi|168186351|ref|ZP_02620986.1| putative integrase/recombinase [Clostridium botulinum C str. Eklund] gi|169295760|gb|EDS77893.1| putative integrase/recombinase [Clostridium botulinum C str. Eklund] Length = 274 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 101/225 (44%), Gaps = 31/225 (13%) Query: 83 IGDRSLK-----RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 I DR LK R L I F K+ I + + ++ N L L+ K L Sbjct: 59 IYDRGLKIKTINRKLVSINQFFKF---NNIAVD---IRQEKVQMQNFLDDILSNKDVQAL 112 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 V+ K D R I+Y LY G+R+SE L LT + + ++ I GKG K Sbjct: 113 VNATY-------KKDDLRARTIIYTLYYTGMRVSEMLQLTIYDTK--KQSITILGKGAKH 163 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 R V +P+ K I E Y +N+ I+ LF G RG P+N I++ G Sbjct: 164 REV-FIPNKLKDIWEAY------MNVRIRKGTALFTGKRG-PINRKTVDSLIKEYAALAG 215 Query: 256 LPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 + S AH RH + +L G D+ +I I GH ++TT+IYT Sbjct: 216 VSKSKAHAHNFRHLYCKNLADKGIDISTIADIAGHQNINTTRIYT 260 >gi|303233777|ref|ZP_07320431.1| site-specific tyrosine recombinase XerC [Finegoldia magna BVS033A4] gi|302495211|gb|EFL54963.1| site-specific tyrosine recombinase XerC [Finegoldia magna BVS033A4] Length = 326 Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 70/214 (32%), Positives = 105/214 (49%), Gaps = 16/214 (7%) Query: 95 IKSFLKYL---KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 I++F KYL +K I + +L+ + KK+ P L ++L L+ +L E K Sbjct: 101 IRTFYKYLINIRKLDIINPAELLD--SPKKNIRQPVYLTLDESLDLLKVILREKDEEIK- 157 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211 AR+ I L CG+R+SE S+ +I +TLR+ GKG+K R V L AI Sbjct: 158 --ARDYCITVLFLNCGMRLSELSSINIDHIK--TNTLRVIGKGNKERTVYLNDMCLDAID 213 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFA 270 Y + P N LF + ++ Q I + G S + H LRH+ A Sbjct: 214 NYLKIRPEIDND----ALFISKKRNRMSNRAIQYRIEHYLKIGGFDTSIYSVHKLRHTAA 269 Query: 271 THLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNS 303 T + G D++ +Q ILGH +STTQIYT+V++ Sbjct: 270 TLMYQYGNVDIKVLQEILGHESVSTTQIYTHVDN 303 >gi|190015178|ref|YP_001966799.1| integrase/recombinase [Bacillus cereus] gi|190015443|ref|YP_001967123.1| site-specific tyrosine recombinase XerS [Bacillus cereus] gi|218848308|ref|YP_002455193.1| integrase/recombinase, phage integrase family [Bacillus cereus AH820] gi|116584854|gb|ABK00969.1| integrase/recombinase [Bacillus cereus] gi|116585124|gb|ABK01233.1| integrase/recombinase [Bacillus cereus] gi|218540359|gb|ACK92755.1| integrase/recombinase, phage integrase family [Bacillus cereus AH820] Length = 361 Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 86/332 (25%), Positives = 136/332 (40%), Gaps = 45/332 (13%) Query: 16 KERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFL-----AFYTEEKIT------IQT 62 K + W ++ E++ LS TL +Y + +FL +L A + +T I T Sbjct: 17 KNKMPWYIIEYAEMKTALSPATLYAYITEYEKFLNWLVNNRLAVDNGKVVTDICDVPIAT 76 Query: 63 IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122 + L E R+F + I R++ R+ S +KS KYL + RN+ + Sbjct: 77 LETLPLNEARSFQRYLQGAGIETRAINRTFSALKSLFKYLAQNTENEHGENYISRNVMEK 136 Query: 123 NSLPRA---------------LNEKQALTLVDNVLLHTSHETKWID-----------ARN 156 L + NEK + + + K I R+ Sbjct: 137 IELHKEKVDAAARADDVANMIFNEKDDVAFLQFLANDYGEMLKDISPRKYSFFQRDKERD 196 Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 AI+ L+ G GLR+SE SLT +I Q T+++ KG+K + S + EY + Sbjct: 197 IAIISLILGTGLRVSEVASLTISSINFRQGTVKVTRKGNKRSSILATRSCLDDVQEYIKV 256 Query: 217 CPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQL--RRYLGLPLSTTAHTLRHSFATH 272 P N N L +GK V R I++L + + H LRH++AT+ Sbjct: 257 RPLKYNCPENEDLLFVTNYKGKFTQLTV--RAIQKLIDKYTSAFDEKRSPHKLRHTYATN 314 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 DL ++ LGH + T IYTN+N+K Sbjct: 315 HYKENKDLVLLRDQLGHTSVEVTSIYTNINNK 346 >gi|325980818|ref|YP_004293221.1| integrase family protein [Nitrosomonas sp. AL212] gi|325533323|gb|ADZ28042.1| integrase family protein [Nitrosomonas sp. AL212] Length = 316 Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 71/293 (24%), Positives = 125/293 (42%), Gaps = 33/293 (11%) Query: 21 WLQNL-EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 W NL +E T ++YE + F+ F E+ R ++ I A+ Sbjct: 29 WFANLGNVE------TRRAYENALKDFMNFTGIQNPEEF-----RVVTRAHIIAWRDDLM 77 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN--LKKSNSLPRALNEKQALTL 137 + + S++ L+ + S +YL ++ T + + ++ ++ A+ + QA L Sbjct: 78 NRSLSSMSIRHRLAALSSLFEYLCEKNTVTHNPVKGVKRPAVESYEGKTPAIGDHQARKL 137 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ---STLRIQGKG 194 +D + R+ AIL L LR E L ++ ++ ++I GKG Sbjct: 138 LD-----APDGSSLKGKRDRAILATLLYHALRRDELCRLKVKDFKQERRGVPHMKISGKG 192 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-------KPLNPGVFQRYI 247 K R VPL P+ I +Y D + L LFR KP+ P + + Sbjct: 193 GKTRYVPLHPAASGLIHDYLDAA--EHGLEDTGALFRSTSNNRDKESQKPITPDGVYKLV 250 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 ++ LG + AH+LR + AT+ L + D+ +Q LGH ++TT+IY + Sbjct: 251 QKYSEKLGFKIG--AHSLRATAATNALDHQADIAKVQEWLGHANIATTRIYDH 301 >gi|256423767|ref|YP_003124420.1| integrase family protein [Chitinophaga pinensis DSM 2588] gi|256038675|gb|ACU62219.1| integrase family protein [Chitinophaga pinensis DSM 2588] Length = 284 Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 76/157 (48%), Gaps = 4/157 (2%) Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVR 207 T I R +L+L Y CGLR SEA L +++ L ++ GKG R++PL V Sbjct: 124 TAAISMREKVMLHLFYSCGLRRSEAEMLNVRDVQVRHRLLYVRSGKGASRRVIPLTGKVA 183 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 + Y L + + ++ F R G+ ++ + R ++ L GL + H LR Sbjct: 184 GELGVY--LEEYRKSGAVEKGAFMLNREGRRMSGSSYNRLLKGLVGRAGLWQGISLHYLR 241 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 HS ATHLL G L ++ LGH L TQIY V + Sbjct: 242 HSIATHLLQGGMSLEYVRDFLGHRHLEATQIYAKVGA 278 >gi|62768242|gb|AAY00030.1| putative integrase/recombinase [uncultured bacterial symbiont of Discodermia dissoluta] Length = 339 Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 88/318 (27%), Positives = 136/318 (42%), Gaps = 37/318 (11%) Query: 6 LPEIVSFELLKERQNWL-QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64 +PE L + Q + Q+L + RG S+ T+ +Y + L FL + + Sbjct: 1 MPEAGPNSLGRALQAFFGQHLPLVRGASRHTVLAYRDGFKLLLRFLEQHLQRPSAALDFP 60 Query: 65 QLSYTEIRAFISKRRTQK---IGDRSLKRSLSGIKSFLKYLKKRK---ITTESNILNM-- 116 L + AF+ TQ+ I R+ + L+ + SF +Y R + IL + Sbjct: 61 DLEPDNLLAFLDHAETQRGNTIATRNAR--LTAVHSFARYAATRHPEHLALCQRILAIPF 118 Query: 117 -RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175 R ++S A +E QAL + + R+ A+L +Y G R+ E L Sbjct: 119 KRGPERSIEYLEA-DEAQALLAAPDCGTPSGR-------RDRALLLAMYNTGARVQEILD 170 Query: 176 LTPQNIMDD---QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232 L P ++ + Q+ LR GKG K RI PL+ A+ L + L+ + PLFR Sbjct: 171 LRPCDLQLERPFQALLR--GKGRKERICPLMKETAVALRAL--LAERGVPLDSEQPLFRN 226 Query: 233 IRGKPLN-PGVFQRYIRQLRRYLGLPLSTT-------AHTLRHSFATHLLSNGGDLRSIQ 284 G PL+ GV RYI + T H +RH+ A+H L G D+ +I Sbjct: 227 RHGAPLHRSGV--RYILHKHCCQAATHAPTLKRKRIHPHVMRHTMASHHLQAGVDIVTIS 284 Query: 285 SILGHFRLSTTQIYTNVN 302 +LGH + T Y VN Sbjct: 285 HLLGHASVETANRYAVVN 302 >gi|170757708|ref|YP_001782133.1| phage integrase [Clostridium botulinum B1 str. Okra] gi|169122920|gb|ACA46756.1| phage integrase [Clostridium botulinum B1 str. Okra] Length = 331 Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 73/279 (26%), Positives = 127/279 (45%), Gaps = 31/279 (11%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 GLS TL++Y+ + IF + + TI T+ ++R F+ R + + S+ Sbjct: 70 GLSLETLKNYQYN---LAIFADYLRKPLATINTM------DLRMFLGAR-CKNMKPSSMN 119 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 +S +KSF +L+ + ++ ++ K+ + + L E++A LL + ET Sbjct: 120 GQISILKSFFGWLEAEEYIPKNPAAKLKQTKEPKRVRKPLTEEEA------ELLRQACET 173 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 R A+ L G R+ E + NI + +L + GKGDK R V + K Sbjct: 174 D----RQKALTEFLISTGCRLDEVFKVNKDNINWHEMSLFVVGKGDKERKV-YFNTKAKI 228 Query: 210 ILEYYDLCPFD----LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 +L+ Y D L + + P R L QR +++ G+ S H Sbjct: 229 LLKKYLFSREDDDPALFVTSKRPYHR------LGKRSIQREFKKIANMAGIEKSIHPHLF 282 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 RHSFAT+ +++G + IQ ++GH +TTQIY ++ + Sbjct: 283 RHSFATYKINSGMPMPIIQHLMGHESPATTQIYAQLSEE 321 >gi|229521999|ref|ZP_04411416.1| site-specific recombinase XerD [Vibrio cholerae TM 11079-80] gi|229340924|gb|EEO05929.1| site-specific recombinase XerD [Vibrio cholerae TM 11079-80] Length = 348 Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 66/256 (25%), Positives = 115/256 (44%), Gaps = 32/256 (12%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S K +++ I+ F +L KR+I + ++ + LPR + K A LL Sbjct: 81 SRKVAVAAIRGFYSFLAKRRIVARNPAADLVYPRMGRRLPRFMGLKSA-----EALLFQP 135 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM------DDQSTLRIQGKGDKIRIV 200 + T R+SA+L LL GCG R++ L ++ ++ +R KG++ R+V Sbjct: 136 NLTSLSGVRDSAMLALLIGCGFRVAGLCGLNESQLIWYQYGEVERLAIRTLEKGERERLV 195 Query: 201 PLLPSVR---KAILEYYDLCPFDLNL-NIQLPLFRGIRGKP------------LNPGVFQ 244 P+ +A L ++DL D L N LF +R + L+ Sbjct: 196 PVPLEAMLLVQAYLGHHDLKHVDRVLDNGDQVLFVNLRNRHVPEWEHRGELRRLSTRAVD 255 Query: 245 RYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 R I++ G+P + AH LRH F T L + IQ+++GH T++IY++++ Sbjct: 256 RMIKKYAIAAGVPEDQSHAHALRHLFGTELAESDSSTLQIQALMGHADPKTSEIYSHISM 315 Query: 304 KNGGDWMMEIYDQTHP 319 + M + D+ +P Sbjct: 316 RK----MTHVLDKGNP 327 >gi|154148966|ref|YP_001406688.1| phage integrase family site specific recombinase [Campylobacter hominis ATCC BAA-381] gi|153804975|gb|ABS51982.1| site-specific recombinase, phage integrase family [Campylobacter hominis ATCC BAA-381] Length = 352 Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 9/154 (5%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSVRKAILE 212 RN + ++ G+R+ EA++L ++I ++ LRI+GKG+K R+V ++K ++E Sbjct: 190 RNMLAVKIIIYTGIRVGEAINLKFKDISEENGIYILRIRGKGNKYRVVM----IKKHLIE 245 Query: 213 YYDLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFA 270 + + +N LN L +GKPL R + ++ G+ AH LRH+FA Sbjct: 246 KH-IEALSINYLNEDGYLLVNAKGKPLTQAYISRIVEKILISAGIRKEKNGAHMLRHTFA 304 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 T L DL +Q LGH L T++IYT+ +S+ Sbjct: 305 TMLYKKQKDLVLVQEALGHASLDTSRIYTHFDSQ 338 >gi|241992607|gb|ACS73659.1| IntI1 [uncultured bacterium] Length = 315 Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 78/304 (25%), Positives = 127/304 (41%), Gaps = 58/304 (19%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 33 TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 83 LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207 + LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191 Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +A + L F + + P +R Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWLWVFAQHTHSTDPRSGVVRRHH 251 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT I Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311 Query: 298 YTNV 301 YT+V Sbjct: 312 YTHV 315 >gi|257486889|ref|ZP_05640930.1| Phage integrase:Phage integrase, N-terminal SAM-like protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331013460|gb|EGH93516.1| Phage integrase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 319 Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 68/291 (23%), Positives = 126/291 (43%), Gaps = 33/291 (11%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W N++ R T ++Y+ D + F F+ ++ R ++ + A+ ++ Sbjct: 32 WFANIDNPR-----TRRAYQIDLQDFCSFVGLAGADEF-----RAVTRAHVLAWRAQLEQ 81 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + +++R L+ + S +L + N ++ + +S NE + L D+ Sbjct: 82 RGLAGATIRRKLAALASLFDHLLENNAVAGGNPVHGVKRPRIDS-----NEGKTPALADH 136 Query: 141 ---VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGD 195 LL R+ A+L +L GLR EA L ++ + + LR+QGKG Sbjct: 137 QAKALLDAPPAESLKGLRDRAVLAVLLYHGLRREEAAQLQTSDLQERRGIKHLRVQGKGG 196 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYIRQLRR 252 K+R +PL P + I Y + N+ LFR +RG+ G+ I ++ Sbjct: 197 KLRWLPLHPVAAERIYAY-----IEQNMERGAGYGSLFRSLRGRSSGTGLSADGIYKIVC 251 Query: 253 YLGLPLST-----TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + + H LR + AT+ L + D+ +Q LGH +STT++Y Sbjct: 252 HWAISAGIKVEGLGVHGLRATAATNALEHDADIAKVQIWLGHANISTTRLY 302 >gi|255535345|ref|YP_003095716.1| probable integrase [Flavobacteriaceae bacterium 3519-10] gi|255341541|gb|ACU07654.1| probable integrase [Flavobacteriaceae bacterium 3519-10] Length = 295 Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 109/244 (44%), Gaps = 49/244 (20%) Query: 95 IKSFLKYLKKRKITT-----ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 +K +L L++R T + + +R L K+ LP + A+ V + + S E Sbjct: 20 VKDYLFELQQRSKTPSQTYFKHTVYGLRFLLKTEGLPYSFLHLPAIPQVKKLPVILSREE 79 Query: 150 KWIDARNSAILY------LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL 202 W +++ +L L+YGCGLR E ++ Q++ D+ L + QGKG K R VPL Sbjct: 80 IWRMLQSAELLKHKLLIGLIYGCGLRCMEVRNIELQHLDFDRKMLHVVQGKGPKDRYVPL 139 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGK---------PLNPGV-------- 242 + + + + +NI+ P LF G + + PL G Sbjct: 140 SEHLIRGLRTF---------INIENPNQYLFNGNQNRNIEEIDASTPLRTGASPFASKDF 190 Query: 243 --------FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 Q I+ + + G+ HTLRHS+ATHLL +G + +Q +LGH R+ + Sbjct: 191 DSRYSQRGVQWVIKTISKKAGITKEVHTHTLRHSYATHLLEDGVSIIMVQKLLGHERIES 250 Query: 295 TQIY 298 T Y Sbjct: 251 TMEY 254 >gi|220935866|ref|YP_002514765.1| integron integrase [Thioalkalivibrio sp. HL-EbGR7] gi|219997176|gb|ACL73778.1| integron integrase [Thioalkalivibrio sp. HL-EbGR7] Length = 323 Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 79/281 (28%), Positives = 129/281 (45%), Gaps = 56/281 (19%) Query: 66 LSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSN 123 + ++ AF++ Q+ + + ++L+GI +L + + E L+ + KK Sbjct: 49 MGAPQVEAFLTHLAVQEDVAPSTQNQALAGIL----FLYRDVLGIELPWLDGVTRAKKPP 104 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 LP LN + L+ +D + L+YG GLR+ EAL L +++ Sbjct: 105 RLPVVLNRDEVRALLAQ-----------LDGMYWLLASLMYGSGLRLMEALRLRVKDVDL 153 Query: 184 DQSTLRI-QGKGDKIR-------IVPLLPSVRKAILEYYDLCPFDLNLN-IQLP------ 228 ++ + + +GKG K R +V L R+ + + L D NL + LP Sbjct: 154 ERREVTVREGKGGKDRRTMLPGTLVEPLTRQREKVAAIHALD-RDNNLAAVYLPHALSRK 212 Query: 229 ------------LF----------RGIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 LF GIR + L+ QR I+ R G+ ++HTL Sbjct: 213 YPNAGKELAWQFLFPASQPGIDPRSGIRRRHHLHESAVQRAIKGAVRAAGILKPASSHTL 272 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 RHSFATHLL +G D+R++Q +LGH + TTQIYT+V ++ G Sbjct: 273 RHSFATHLLEDGYDIRTVQELLGHSDVRTTQIYTHVLNRGG 313 >gi|108861476|gb|ABG21674.1| class 2 integrase [Providencia stuartii] gi|108861489|gb|ABG21686.1| class 2 integrase [Providencia stuartii] Length = 325 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 64/188 (34%), Positives = 87/188 (46%), Gaps = 39/188 (20%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR--IVPL-LPSVR 207 +D RN I LLYG GLRI+E L L ++ D + + GKG K R ++P L S Sbjct: 118 MDTRNQVIFALLYGAGLRINECLRLRVKDFDFDNGCITVHDGKGGKSRNSLLPTRLISAI 177 Query: 208 KAILEYYDLCPFDLNL---NIQLPLFRGIRGKP--------------------------- 237 K ++E L D NL LP F R P Sbjct: 178 KQLIEQARLIQQDDNLQGVGPSLP-FALDRKYPSAYRQAAWMFVFPSSTLCNHPYNGKLC 236 Query: 238 ---LNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 L+ V ++ ++ + G+ T HT RHSFATHLL G D+R++Q +LGH + Sbjct: 237 RHHLHDSVARKALKAAVQKAGIVSKRVTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVK 296 Query: 294 TTQIYTNV 301 TTQIYT+V Sbjct: 297 TTQIYTHV 304 >gi|313676056|ref|YP_004054052.1| integrase family protein [Marivirga tractuosa DSM 4126] gi|312942754|gb|ADR21944.1| integrase family protein [Marivirga tractuosa DSM 4126] Length = 286 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 111/235 (47%), Gaps = 35/235 (14%) Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 SKR+T D ++ G++ + ++R ES ++ + ++++ +LP L++++ Sbjct: 60 SKRKTPS--DSFFMHTVYGLRYLYRIFEQR----ESRVI-LPSIERQKALPVVLSQQEV- 111 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKG 194 ++ ++ LLYGCGLR E +L ++ ++ L +Q GKG Sbjct: 112 ---------RLLLKTPKLLKHRLMMALLYGCGLRNFELCNLKIVHLDLERKQLHVQQGKG 162 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV--------FQRY 246 K R VPL + + + Y L + P G+P G Q Sbjct: 163 RKDRYVPLCDLLVRGVNTY---------LQAEKPTEYLFNGQPDEDGGHTQLSTRGVQWV 213 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +RQ R+ G+ TAHTLRHS+ATHLL G D+ +++ +LGH + TT Y +V Sbjct: 214 MRQARQQSGIKKQITAHTLRHSYATHLLEMGTDIMTLKDLLGHGDIQTTLGYLHV 268 >gi|41023639|emb|CAF18331.1| integrase/recombinase IntI1 [Morganella morganii subsp. morganii] Length = 320 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 84/338 (24%), Positives = 140/338 (41%), Gaps = 62/338 (18%) Query: 6 LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65 LP + S ++L + + ++ L S T Q+Y R F+ F ++ Sbjct: 8 LPPLRSVKVLDQLRERIRYLH----YSSRTEQAYVNWVRAFIRFHG--------VRHPAT 55 Query: 66 LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 L +E+ AF+S ++ S R + + L + K T + + + S L Sbjct: 56 LGSSEVEAFLSWLANERKVSVSTHRQ--ALAALLFFYGKVLCTDLPWLQEIGRPRPSRRL 113 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 P L + + ++ +++ + LLYG G+RISE L L +++ D Sbjct: 114 PVVLTPDEVVRILG-----------FLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFDH 162 Query: 186 STLRI-QGKGDKIR--IVP--LLPSVR--------------------------------K 208 T+ + +GKG K R ++P L PS+R + Sbjct: 163 GTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYPR 222 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 A + F + + P +R + FQR ++ G+ T HTLRHS Sbjct: 223 AGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHS 282 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 FAT LL +G D+R++Q +LGH +STT IYT+V G Sbjct: 283 FATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKVGG 320 >gi|120406878|ref|YP_956707.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] gi|119959696|gb|ABM16701.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] Length = 395 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 78/296 (26%), Positives = 131/296 (44%), Gaps = 31/296 (10%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 LL + + WL + ERGL+++T+ YE R+FL +T E+ A Sbjct: 108 LLADYRGWLID---ERGLAQMTVIRYENLARRFLTLYPLDAGVAVT--------GAEVVA 156 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNE 131 F+ + +Q++ S K ++ ++S L++L R +T + + + +P+AL Sbjct: 157 FLLQE-SQRVSVGSAKGRVAELRSLLRFLFVRGLTPRLLTTAVPPVAGWRDTGIPKALPA 215 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI- 190 L+D+ + + R+ AIL ++ GLR E + +I D T RI Sbjct: 216 GHVQQLLDH-----CDRSDPVQVRDYAILMMVARLGLRSIEVARMQLDDI--DWRTGRII 268 Query: 191 -QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRG--KPLNPGVFQRY 246 GK + +PL V A+ +Y D+ QL +F + + + P + Sbjct: 269 LHGKASRKDGMPLPEEVGAALADYLT----DIRPRTQLRAVFVSCKAPRRAIRPDLVSDV 324 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 R+ GLP AH LRH+ AT +L G L I +L H L+TT +Y V+ Sbjct: 325 TRRACDRAGLP-RVGAHRLRHTLATEMLQRGVKLADIGQVLRHRDLATTALYAKVD 379 >gi|311030547|ref|ZP_07708637.1| hypothetical protein Bm3-1_08391 [Bacillus sp. m3-13] Length = 280 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 67/275 (24%), Positives = 124/275 (45%), Gaps = 22/275 (8%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 G S LTL++Y Q+ + L ++ + ++ I T QL I+ + + SL Sbjct: 18 GYSPLTLKTY---CFQYNMLLRYFGDIELNILTTDQLKEYLIKG------STHLKPSSLG 68 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 + I+S K+ ++ ++ K +P+ L E + L ++ Sbjct: 69 HRVRCIRSLFKWANDEGFIKKNPAAKLKEPKLGKRIPKFLTELEIEHLRESCQ------- 121 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 ++ +A+ Y G RI E + L +I +++ + GKGDK R V Sbjct: 122 ---NSMENALFEFFYSTGCRIGEVVKLNRDDINFASNSVIVHGKGDKEREVYFNTRCSLW 178 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 + Y D D + ++ + R R ++ + + I+++ G+ + H LRHS+ Sbjct: 179 LKRYLDERD-DQDQSLFITERRPKRRMSID--LIRYIIKRISSGAGIKKNIHPHQLRHSY 235 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 ATH+++NG L IQS+LGH + TT+IY ++ K Sbjct: 236 ATHMINNGAPLEVIQSLLGHEKSETTRIYAQLSGK 270 >gi|257469328|ref|ZP_05633422.1| integrase family protein [Fusobacterium ulcerans ATCC 49185] Length = 294 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 79/300 (26%), Positives = 133/300 (44%), Gaps = 15/300 (5%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 L K +++L E S T++S + D Q L+ Y + I+ +++ +R Sbjct: 4 LDKNIKDFLYYAEFGENKSLNTIKSLKKDLSQ----LSEYLKNIEKIEEASKITPVMLRG 59 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 FI + ++G RS+ R LS ++SF KYL K +N++ ++ NS + Sbjct: 60 FIIALQKNEVGKRSINRKLSSLRSFFKYLMK------NNLIKNNPIEIINSPSFEAEKPD 113 Query: 134 ALTLVD-NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 LTL + N L + R+ IL LLY G+ +E LS+ Q D TL + Sbjct: 114 ILTLEEINKLRDVINTDNANGLRDRLILELLYSSGITSTEMLSIGEQVFDLDSRTLLVSN 173 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 G R V R+ Y + + N + LF G L+ +R + + Sbjct: 174 -GKANRYVFFSQRTREYFKRYVEAKKEKYGDKYNSSI-LFVNGSGSRLSDRSLRRIVDRY 231 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ + ++ RH+FA HLL+ G L +Q ++GH + +T+IY + K D+M Sbjct: 232 AARAGITREISPYSFRHTFAVHLLTKGMSLNFLQELMGHVTIESTKIYQEILYKIPFDFM 291 >gi|269104474|ref|ZP_06157170.1| integrase/recombinase [Photobacterium damselae subsp. damselae CIP 102761] gi|268161114|gb|EEZ39611.1| integrase/recombinase [Photobacterium damselae subsp. damselae CIP 102761] Length = 468 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 93/172 (54%), Gaps = 12/172 (6%) Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 L + + L+ +++ K I R++AI +L+Y GLR +E ++L+ +I ++ T+ + GKG Sbjct: 286 LDKISAICLNQTNKIKGI--RDNAIFWLMYESGLRRAEVVNLSLDDIDINRGTIHVVGKG 343 Query: 195 DKIRIVP--LLPSVRKAILEYYDLCPFDLNLNIQLPLF------RGIRGKPLNPGVFQRY 246 +K R VP L + +A+ +++D+ + L NI LF + + K L Sbjct: 344 NKERYVPFSLESDLYRALSKWFDV-RYKLQGNIFNSLFCVVNKHQQVVEKSLTTQSLNDL 402 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 +Q++R +G + H RHS AT+LL G DL + +GH ++TTQ Y Sbjct: 403 CKQIQR-MGFERMVSPHDFRHSVATNLLRAGHDLLLVSKFMGHSSVTTTQRY 453 >gi|160875353|ref|YP_001554669.1| integrase family protein [Shewanella baltica OS195] gi|160860875|gb|ABX49409.1| integrase family protein [Shewanella baltica OS195] gi|315267553|gb|ADT94406.1| integrase family protein [Shewanella baltica OS678] Length = 296 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 54/155 (34%), Positives = 81/155 (52%), Gaps = 14/155 (9%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAIL 211 R LY GLR+ EA+SL +I D +++ KG K R+VPL P L Sbjct: 125 RYQVCFLTLYSMGLRLGEAISLQVGDI--DAGLMQVHIRDAKGGKDRLVPL-PQRTLLAL 181 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKP---LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 YY + + + LF G +P ++ G Q+ ++Q+ + + + H+LRHS Sbjct: 182 RYY----WRTHRHPHW-LFPGKDNQPDSLMDRGGLQKAMKQVILECNIHKAISPHSLRHS 236 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 +ATHLL G DLRS+Q++LGH L+TT YT + Sbjct: 237 YATHLLEQGLDLRSVQTLLGHHSLNTTARYTRLTD 271 >gi|257091622|ref|YP_003165265.1| hypothetical protein CAP2UW1_4693 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048631|gb|ACV37818.1| hypothetical protein CAP2UW1_4693 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 337 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 76/298 (25%), Positives = 137/298 (45%), Gaps = 29/298 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI----TIQTIRQLSYTEIRAFIS 76 ++++L +R LS T+ +Y F++FL F E ++ + T+ ++ I AF+ Sbjct: 19 FVEHLTQQRALSPQTVAAYR---DAFVLFLGF-AEVRLGRSPALITLADITPDLITAFLD 74 Query: 77 K-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 R + RS L+ ++SFLK+ R +T+ ++ ++ + +P E+ L Sbjct: 75 HLERKRHNSVRSRNGRLAALRSFLKFAAHRDVTS------LQVIEHALGVPAKRFERPML 128 Query: 136 TLV---DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRI 190 + + + + + + W R+ ++ LLY G R+SE + + ++ D + + + Sbjct: 129 GYLSREEMLAVIGTPDGTWFSQRDHVLVLLLYNTGARVSEIVGVKVGEVVLDDGAACVHL 188 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIR- 248 GKG K R VPL S +AI + P + PL G+ ++ V QR R Sbjct: 189 HGKGRKQRSVPLWRSTIRAIRAWIKRNP---QFDSDSPLLHNRDGQAMSRWNVMQRLDRA 245 Query: 249 -QLRRYLGLPLST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 Q+ L+T + H +RH+ A HLL G D+ I LGH +TT Y + Sbjct: 246 VQVATESCPELATRHISPHVIRHTTAMHLLQAGVDISVIALWLGHESPATTHQYVEAD 303 >gi|218707888|ref|YP_002415407.1| Integrase/recombinase (E2 protein) [Escherichia coli UMN026] gi|293404547|ref|ZP_06648540.1| integron integrase IntI1 [Escherichia coli FVEC1412] gi|218434985|emb|CAR15926.1| Integrase/recombinase (E2 protein) [Escherichia coli UMN026] gi|291428259|gb|EFF01285.1| integron integrase IntI1 [Escherichia coli FVEC1412] Length = 337 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 78/310 (25%), Positives = 127/310 (40%), Gaps = 58/310 (18%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 33 TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 83 LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207 + LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191 Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +A + F + + P +R Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWLWFWVFAQHTHSTDPRSGVVRRHH 251 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT I Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311 Query: 298 YTNVNSKNGG 307 YT+V G Sbjct: 312 YTHVLKVGGA 321 >gi|89894917|ref|YP_518404.1| hypothetical protein DSY2171 [Desulfitobacterium hafniense Y51] gi|89334365|dbj|BAE83960.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 290 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 68/275 (24%), Positives = 125/275 (45%), Gaps = 32/275 (11%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 GLS LTL+ Y + R F + +E ++ ++R ++ + + ++ S+ Sbjct: 28 GLSDLTLKGYGIELRIFAEHVHKAADE---------ITTADLRLYLGEFKGLRLS--SIS 76 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 LS +KSF +L I + ++ KK +P+AL+ ++ L + Sbjct: 77 GKLSVLKSFFSWLAAEDILLKDPSRKIKPPKKEKRIPKALSIEELEMLREAC-------- 128 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV----PLLPS 205 I R A++ ++Y G R+SE + ++ + + GKG+K R V + Sbjct: 129 --ITPRERALIEVMYATGCRLSEVQKMNRDDVDYQTMSASVIGKGNKERTVYFSYKAMYH 186 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 ++K ++ D L + + P R L+ QR ++ + + + H L Sbjct: 187 LKKYLMRRADEAEA-LFITERRPYRR------LSARGIQREVKLIADRSEVRKNVHPHVL 239 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 RH+FAT +L+NG D+ S+Q++LGH TTQIY Sbjct: 240 RHTFATLMLNNGADIASVQALLGHEDPGTTQIYAQ 274 >gi|153821954|ref|ZP_01974621.1| DNA integrase IntI1 [Vibrio cholerae B33] gi|126520493|gb|EAZ77716.1| DNA integrase IntI1 [Vibrio cholerae B33] Length = 311 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 78/310 (25%), Positives = 127/310 (40%), Gaps = 58/310 (18%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 7 TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 56 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 57 LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 105 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207 + LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 106 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 165 Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +A + F + + P +R Sbjct: 166 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 225 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT I Sbjct: 226 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 285 Query: 298 YTNVNSKNGG 307 YT+V G Sbjct: 286 YTHVLKVGGA 295 >gi|317063575|ref|ZP_07928060.1| integrase/recombinase [Fusobacterium ulcerans ATCC 49185] gi|313689251|gb|EFS26086.1| integrase/recombinase [Fusobacterium ulcerans ATCC 49185] Length = 298 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 79/300 (26%), Positives = 133/300 (44%), Gaps = 15/300 (5%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 L K +++L E S T++S + D Q L+ Y + I+ +++ +R Sbjct: 8 LDKNIKDFLYYAEFGENKSLNTIKSLKKDLSQ----LSEYLKNIEKIEEASKITPVMLRG 63 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 FI + ++G RS+ R LS ++SF KYL K +N++ ++ NS + Sbjct: 64 FIIALQKNEVGKRSINRKLSSLRSFFKYLMK------NNLIKNNPIEIINSPSFEAEKPD 117 Query: 134 ALTLVD-NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 LTL + N L + R+ IL LLY G+ +E LS+ Q D TL + Sbjct: 118 ILTLEEINKLRDVINTDNANGLRDRLILELLYSSGITSTEMLSIGEQVFDLDSRTLLVSN 177 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 G R V R+ Y + + N + LF G L+ +R + + Sbjct: 178 -GKANRYVFFSQRTREYFKRYVEAKKEKYGDKYNSSI-LFVNGSGSRLSDRSLRRIVDRY 235 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 G+ + ++ RH+FA HLL+ G L +Q ++GH + +T+IY + K D+M Sbjct: 236 AARAGITREISPYSFRHTFAVHLLTKGMSLNFLQELMGHVTIESTKIYQEILYKIPFDFM 295 >gi|254168548|ref|ZP_04875392.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] gi|197622603|gb|EDY35174.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] Length = 305 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 75/153 (49%), Gaps = 13/153 (8%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQ---GKGDKIRIVPLLPSV 206 +D RN IL LL+ GLR++E ++L +++ D Q + GKG K R VP+ P V Sbjct: 116 VDLRNRTILALLFATGLRVNEVINLDWKDLYYDNVQGVWMLHVRMGKGRKPRKVPVPPKV 175 Query: 207 RKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 K + E+ + P D N P G ++ F++ ++ G+P AH Sbjct: 176 IKMLFEWRKIQPKTDPNAIFTTP------GGRISHAYFRKIVKVAAERAGIPW-FHAHLA 228 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 RH A L G +L +I+ LGH L TTQIY Sbjct: 229 RHWRAIKFLEEGVNLETIRRYLGHSSLKTTQIY 261 >gi|228911789|ref|ZP_04075557.1| Integrase [Bacillus thuringiensis IBL 200] gi|228847849|gb|EEM92735.1| Integrase [Bacillus thuringiensis IBL 200] Length = 362 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 86/332 (25%), Positives = 136/332 (40%), Gaps = 45/332 (13%) Query: 16 KERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFL-----AFYTEEKIT------IQT 62 K + W ++ E++ LS TL +Y + +FL +L A E +T I T Sbjct: 17 KSKMPWYIIEYAEMKTALSPATLYAYITEFEKFLKWLISNRLAVENGEVVTNICDVPITT 76 Query: 63 IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122 + L E R F + + I R++ R+ S +KS KYL + + RN+ + Sbjct: 77 LENLPLNEARTFQRYLQGEGIETRAINRTFSALKSLFKYLAQNTENEQGENYISRNVMEK 136 Query: 123 NSLPRA---------------LNEKQALTLVDNVLLHTSHETKWID-----------ARN 156 L + NEK + + + K I R+ Sbjct: 137 IELHKEKVDAAARADDVANMIFNEKDDVAFLQFLANDYGEMLKDISPKKYSYFQRDKERD 196 Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 AI+ L+ G GLR+SE SLT +I Q +R+ KG+K V S + EY + Sbjct: 197 IAIISLILGTGLRVSEVASLTISSINFRQGKVRVTRKGNKRSSVLATRSCLDDVQEYIKV 256 Query: 217 CPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQL--RRYLGLPLSTTAHTLRHSFATH 272 P N + L +GK V R I++L + + H LRH++AT+ Sbjct: 257 RPSKYNCPQDEDLLFVTNYKGKYTQLTV--RAIQKLCDKYSSAFDEKRSPHKLRHTYATN 314 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 DL ++ LGH + T IYTN+N++ Sbjct: 315 HYKENKDLVLLRDQLGHTSVEVTSIYTNINNE 346 >gi|229145530|ref|ZP_04273914.1| Integrase/recombinase [Bacillus cereus BDRD-ST24] gi|228637983|gb|EEK94429.1| Integrase/recombinase [Bacillus cereus BDRD-ST24] Length = 326 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 103/206 (50%), Gaps = 10/206 (4%) Query: 96 KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155 K+F K+L + K + I +++ LK L KQ TL+ V T W R Sbjct: 109 KTFFKFLFENKHIPINPIKDIKKLKARAKEVEVLTPKQLKTLLSKVDRKT-----WNGIR 163 Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY 214 + AIL +L GLR +E L+L+ +++ +Q L ++ K R VP+ + + A L+ + Sbjct: 164 DYAILLVLIETGLRQNEILNLSVLDVVWEQDLLLVKHTKTYHQRKVPITDNTKNA-LKRW 222 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 L ++ LF GI GK L ++ I + + + + H RH+FA+ L Sbjct: 223 LLIRGEVYTK---RLFCGISGKALTNSGLRQMIYKYAKLANIQSRCSPHIFRHTFASIYL 279 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTN 300 NGGDL S+Q I+GH ++ T+ YT+ Sbjct: 280 RNGGDLFSLQQIMGHSDITMTRRYTH 305 >gi|162448726|ref|YP_001611093.1| integrase/recombinase [Sorangium cellulosum 'So ce 56'] gi|161159308|emb|CAN90613.1| Integrase/recombinase [Sorangium cellulosum 'So ce 56'] Length = 316 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 74/280 (26%), Positives = 121/280 (43%), Gaps = 52/280 (18%) Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE-SNILNMRNLKKS 122 RQ+ E+ AF++ + R+ + + L +L +R + + + + ++ Sbjct: 41 RQMGAEEVTAFLND---LAVARRTAASTQNQALCALLFLYRRVLDLQIPRLEALERARRP 97 Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI- 181 LP L+ + ALTL+++++ I LLYG GLR+ EALS+ +++ Sbjct: 98 EHLPTVLSRQDALTLLEHLI-----------PPFRLIGELLYGSGLRLLEALSIRVKDVD 146 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP-------------FDL--NLNIQ 226 +D + + +GKG R L R + D DL L + Sbjct: 147 LDRRQIMVRRGKGQHDRPALLPARARDELQAQLDAVAQRHKKELAVGRGEVDLPHALRAK 206 Query: 227 LP----------LFRGIR-------GKP----LNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 +P +F R G+ L+ QR + R GL T H L Sbjct: 207 MPGAATSLAWQYIFPASRPCTDPATGRQVLYHLHESAVQRAVHDAGRAAGLTKRATCHIL 266 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 RHSFATHLL G D+R+IQ++LGH + TT IYT++ + Sbjct: 267 RHSFATHLLEAGTDIRTIQTLLGHKDVRTTMIYTHIVDRG 306 >gi|12642602|gb|AAK00304.1|AF314189_1 integrase IntI8 [uncultured bacterium BAL3] Length = 316 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 78/178 (43%), Gaps = 39/178 (21%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPS------------VRK 208 LLYG G+R+ E L L +++ + I+ GKG+K RI +LP R+ Sbjct: 140 LLYGTGMRLMECLRLRVKDVDFGYGQILIRDGKGEKDRIT-MLPERLVGPLKDQMDRARR 198 Query: 209 -----------------AILEYYDLCPFDLNLNIQLPLFRG--------IRGKPLNPGVF 243 A+ Y F+ N P IR L+ V Sbjct: 199 IHDTDLREGFGEVHLPYALARKYPRAGFEWNWRYVFPSRNRSADPDDGVIRRHHLDESVL 258 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 QR +R R G+ HT RHSFATHLL G D R++Q +LGH +STT IYT+V Sbjct: 259 QRAVRTASRVAGISKPVHCHTFRHSFATHLLQAGYDTRTVQELLGHSDVSTTMIYTHV 316 >gi|116625845|ref|YP_828001.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116229007|gb|ABJ87716.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 363 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 83/303 (27%), Positives = 132/303 (43%), Gaps = 32/303 (10%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS- 76 R + +L RG S T+ SY L FLA + IT + L I AF+S Sbjct: 14 RDYFTDHLPRLRGTSPHTIHSYRDSMVLLLRFLARQRNKPITGLDLTDLDPPGILAFLSH 73 Query: 77 --KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 K R + R+++ LS I F ++ R N ++ ++ +P ++A Sbjct: 74 LEKERKNCVSTRNVR--LSAIHVFFHFVASR------NPEHLELAQRVLGIPFKRARQRA 125 Query: 135 LTLVD----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLR 189 + ++ + +L T +R+ A+L ++ G R+ E L ++ + +R Sbjct: 126 MDYLEYDEIDAILKAIDRTTPQGSRDYALLATMFNTGGRVQEIADLRACDLQLTKPFQVR 185 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIR 248 + GKG K R PL P + + D DL ++ F RG+PL G+ RYI Sbjct: 186 LFGKGRKERYCPLWPQTAAVLRAFSDQRTLDLRSESRV--FLNHRGRPLTRFGI--RYI- 240 Query: 249 QLRRYLGLPLSTTA---------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 L + LGL + H++RHS A LL +G DL SI +LGH +TT Y Sbjct: 241 -LAKCLGLACADVPNLRTKRLHPHSVRHSTAVALLKSGVDLSSISHLLGHASPTTTNRYA 299 Query: 300 NVN 302 V+ Sbjct: 300 KVD 302 >gi|77562727|gb|ABB00017.1| class 1 integrase [Pseudomonas aeruginosa] Length = 323 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 78/310 (25%), Positives = 127/310 (40%), Gaps = 58/310 (18%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 33 TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 83 LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207 + LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191 Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +A + F + + P +R Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT I Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311 Query: 298 YTNVNSKNGG 307 YT+V G Sbjct: 312 YTHVLKVGGA 321 >gi|237721112|ref|ZP_04551593.1| phage integrase [Bacteroides sp. 2_2_4] gi|229449947|gb|EEO55738.1| phage integrase [Bacteroides sp. 2_2_4] Length = 327 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 67/278 (24%), Positives = 124/278 (44%), Gaps = 29/278 (10%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 GL + +L Y R F++ + + +E +T ++R +++ ++ K D +L Sbjct: 55 GLCQSSLDYYRVILRAFILHVGKHIKEIVT---------DDVRVYLAYKKINKCSDNTLN 105 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 + SF + + + + +L ++ +++ L + L+E D L + T Sbjct: 106 NIRRTLSSFFTWCTEEGVLDRNPMLRIKGVRQVKKLKKPLSED------DMERLRSLART 159 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 K RN AI+ L+ G R+SE +++ ++ + + GKG K R V L + A Sbjct: 160 K----RNKAIIEFLFSTGCRVSEMVNVNLGDVDWQNGQIDVLGKGRKYRTVYLSARCKIA 215 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGI--RGKPLN------PGVFQRYIRQLRRYLGLPLSTT 261 + EY D DL + L + G+ + K +N G + +R L + G+ + Sbjct: 216 LQEYVDSRTDDLEA-LFLSDYEGMCQQIKDMNKLSRISKGAVEIMLRNLGKKAGIS-NVH 273 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 H LR + AT L G + +Q +LGH + TT IY Sbjct: 274 PHRLRRTAATTALKRGMPIEQVQKMLGHESIETTTIYA 311 >gi|330016038|ref|ZP_08308377.1| site-specific recombinase, phage integrase family [Klebsiella sp. MS 92-3] gi|328529758|gb|EGF56652.1| site-specific recombinase, phage integrase family [Klebsiella sp. MS 92-3] Length = 327 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 102/239 (42%), Gaps = 35/239 (14%) Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSN 123 Q++ I + + RR+Q I ++ R L+ I F ++ + E I + LK+ Sbjct: 100 QITKALISQYYAARRSQGIKASTINRDLNSISGMFTALIEAELFSGEHPIRGRKKLKEEV 159 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 L E + + ++L +D N I L G R EA L ++I+ Sbjct: 160 PETGYLTEDE----IKHLLFK-------LDGDNKKIAILCLSTGARWGEAARLKAEHIIQ 208 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 ++ T ++ K +K R VP+ V K I + G RG + Sbjct: 209 NRVTF-VKTKSNKQRTVPVSAEVAKLIAD-------------------GKRGLLFGKASY 248 Query: 244 QRYIRQLRRYL--GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + RQ+ R + LP H LRHSFATH + NGG + ++Q ILGH R+ T Y + Sbjct: 249 SDF-RQILREVKPDLPTGQATHALRHSFATHFMINGGSIITLQRILGHARIEQTMAYAH 306 >gi|1197009|gb|AAA88676.1| unknown protein [Escherichia coli] Length = 337 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 79/310 (25%), Positives = 129/310 (41%), Gaps = 58/310 (18%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 33 TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 83 LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVRKA 209 + LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R+ Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREH 191 Query: 210 I-----------------------LE---------YYDLCPFDLNLNIQLPLFRGIRGKP 237 + LE + F + + P +R Sbjct: 192 VSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT I Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311 Query: 298 YTNVNSKNGG 307 YT+V G Sbjct: 312 YTHVLKVGGA 321 >gi|291612849|ref|YP_003523006.1| integron integrase [Sideroxydans lithotrophicus ES-1] gi|291582961|gb|ADE10619.1| integron integrase [Sideroxydans lithotrophicus ES-1] Length = 330 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 70/224 (31%), Positives = 102/224 (45%), Gaps = 48/224 (21%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 KK LP LN ++ +++L T + AR LLYG G+R+ E L + Sbjct: 107 KKPQRLPSVLNREEV-----SLVLERMEGTYGLMAR------LLYGTGMRLMECCRLRVK 155 Query: 180 NIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY----DLCPFDLN---LNIQLP--L 229 +I Q + I+ GKG K R+ L ++ K + EY L DL+ + LP L Sbjct: 156 DIDFRQREILIRDGKGAKDRVTMLPETLIKPLQEYLLKRRRLFEDDLSKGMTEVYLPDAL 215 Query: 230 FRGI---------------------------RGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 R R ++ + QR +++ G+ T Sbjct: 216 ARKYPNAAQEWIWQYVFPSGSYSVDPRSGRERRHHIDEKLLQRAMKKAVTASGITKFATP 275 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 HTLRHSFATHLL G D+R++Q +LGH +STT IYT+V +K G Sbjct: 276 HTLRHSFATHLLEGGYDIRTVQELLGHSDVSTTMIYTHVLNKGG 319 >gi|260778906|ref|ZP_05887798.1| integron integrase IntI2 [Vibrio coralliilyticus ATCC BAA-450] gi|260605070|gb|EEX31365.1| integron integrase IntI2 [Vibrio coralliilyticus ATCC BAA-450] Length = 321 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 93/313 (29%), Positives = 132/313 (42%), Gaps = 67/313 (21%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRSL 88 G S T +SY R ++ FY E++ +Q + E+ F+S ++ + + Sbjct: 19 GYSIRTEKSYLYWIRSYI----FYHEKRHPMQ----MGSEEVIQFLSYLANSRNVAINTQ 70 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 K +L+ L YL + + E L R+ K LP + + V VL H Sbjct: 71 KVALNA----LVYLYQAFLKIELGELGFRHATKQRQLPVVITPNE----VKQVLSH---- 118 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIR------- 198 ++ + I+ LLYG GLRISE L L Q+I D S L I GKG K R Sbjct: 119 ---LNGKEKLIVELLYGSGLRISECLRLRVQDI--DLSNLSITVRDGKGKKDRQTLLSKQ 173 Query: 199 ---IVPLL-----------------PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238 ++ LL PS+ AI + Y L P I Sbjct: 174 CVDVLKLLIEQAEQVQIADNKHGIGPSLPYAIHKKYPNAFRKLAWMFIFP-SPSISHSQY 232 Query: 239 N---PGVFQRYIRQLRRYLGLPLS-------TTAHTLRHSFATHLLSNGGDLRSIQSILG 288 N P + +R+ L ++ T HT RHSFATHLL G D+RS+Q +LG Sbjct: 233 NSDHPSRHHLHSSVIRKALSRAVAKTTINKKVTCHTFRHSFATHLLQAGRDIRSVQELLG 292 Query: 289 HFRLSTTQIYTNV 301 H + TTQIYT+V Sbjct: 293 HNDVKTTQIYTHV 305 >gi|229193382|ref|ZP_04320331.1| Site-specific recombinase, phage integrase [Bacillus cereus ATCC 10876] gi|228590096|gb|EEK47966.1| Site-specific recombinase, phage integrase [Bacillus cereus ATCC 10876] Length = 327 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 58/259 (22%), Positives = 119/259 (45%), Gaps = 9/259 (3%) Query: 49 FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT 108 F ++T+E + + +R+++ I +I + + ++ LSG+KS + L+K + Sbjct: 58 FYRYFTKE-VEVTDLRKMNADHIGLYIDSLLEKGLSPVTVNIRLSGLKSLFRRLEKHEYI 116 Query: 109 TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168 E+ +N L+ S N Q L T + R+ + L+ CG+ Sbjct: 117 KENPAVNFSKLRTDESKIYTFNNSQI-----KRLFRVVDTTSYAGFRDYVAMLLMLHCGM 171 Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228 R++E +L +I D + + G +K R +P ++ + E L ++ ++ Sbjct: 172 RVNEVAALEINDIDFDNGVILLAGAKNKNRRSRSIPMSKRIMGEIKQLITESMDYFEEVK 231 Query: 229 -LFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQS 285 +F G+ L+ + ++ + R GL + H+LRH+FA + L +GG + ++ Sbjct: 232 HVFLTQDGRRLDNDIIRKRMYTYGRLSGLYRECRVSPHSLRHTFACNYLRDGGSVNALMH 291 Query: 286 ILGHFRLSTTQIYTNVNSK 304 ILGH +++T Y + S+ Sbjct: 292 ILGHKDIASTMRYVRMTSE 310 >gi|16263337|ref|NP_436130.1| integrase/recombinase [Sinorhizobium meliloti 1021] gi|16263633|ref|NP_436426.1| Integrase/recombinase [Sinorhizobium meliloti 1021] gi|14524018|gb|AAK65542.1| integrase/recombinase [Sinorhizobium meliloti 1021] gi|14524343|gb|AAK65838.1| Integrase/recombinase [Sinorhizobium meliloti 1021] Length = 329 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 79/310 (25%), Positives = 131/310 (42%), Gaps = 28/310 (9%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQ 81 ++L ER S T +Y + + F A ++ + I + I AF+ T+ Sbjct: 14 EHLPRERRASVHTCDAYAYSFQLLVTFAARRLSKRPCLLQIEDIDVPMILAFLEHIEETR 73 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPRALNEKQALTLV 138 RS L+ +KSF +YL+ R L + + K +L +L+ + Sbjct: 74 GNKARSRNARLAAVKSFFRYLEHRVPAVLDQALRVHAMPMKKIDEALVASLSRTEV---- 129 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDK 196 LL+ R+ A+L+L + GLR+SE + LT + D +S ++ I GKG + Sbjct: 130 -QALLNAPDRRSLSGIRDRAMLHLAFAGGLRVSELVGLT-LDQFDGRSPASIHIIGKGRR 187 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 R++PL AI + + P N LF G+ + F+ YI + + Sbjct: 188 ERVLPLWQETAAAIRAWIAVRP----KNGDTALFLNNAGRMMTRSGFE-YILEKHAAAAV 242 Query: 257 PLSTT-------AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 ++ T H LRHS A H+L D+R + LGH L +T+IY + Sbjct: 243 SVAPTLATKSISPHVLRHSCAMHMLQATRDIRKVALWLGHASLQSTEIYLRADPTEK--- 299 Query: 310 MMEIYDQTHP 319 +E+ D P Sbjct: 300 -LEMLDALAP 308 >gi|255535352|ref|YP_003095723.1| probable integrase [Flavobacteriaceae bacterium 3519-10] gi|255341548|gb|ACU07661.1| probable integrase [Flavobacteriaceae bacterium 3519-10] Length = 253 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 66/234 (28%), Positives = 112/234 (47%), Gaps = 25/234 (10%) Query: 95 IKSFLKYLKKRKITT-----ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 +K +L L++R T + + +R L K+ LP + A+ V + + S E Sbjct: 20 VKDYLFELQQRSKTPSQSYFKHTVYGLRFLLKTEGLPYSFLHLPAIPQVKKLPVILSREE 79 Query: 150 KWIDARNSAILY------LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL 202 W +++ +L L+YGCGLR E ++ Q++ D+ L I QGKG K R VPL Sbjct: 80 IWRMLQSAELLKHKLLIGLIYGCGLRCMEVRNIELQHLDFDRKMLHIVQGKGSKDRYVPL 139 Query: 203 LPSVRKAI-----LEYYDLCPFDLN-------LNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 + + + +E + F+ N +++ P + + GV Q I+ + Sbjct: 140 SEHLIRGLKTFISIENPNQYLFNGNQNRNIEDIDVLAPNRKDFDSRYSQRGV-QWVIKTI 198 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + G+ HTLRHS+ATHLL +G + +Q +LGH R+ +T Y + S+ Sbjct: 199 SKKAGITKEVHTHTLRHSYATHLLEDGVPIIMVQKLLGHERIESTMEYLHSLSR 252 >gi|126661477|ref|ZP_01732531.1| tyrosine recombinase xerC [Cyanothece sp. CCY0110] gi|126617235|gb|EAZ88050.1| tyrosine recombinase xerC [Cyanothece sp. CCY0110] Length = 285 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 50/146 (34%), Positives = 74/146 (50%), Gaps = 7/146 (4%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212 R+ +L L+Y CGLRISEA LT Q++ D I GKG + R+V + + ++ Sbjct: 127 RDFLMLSLIYACGLRISEASRLTWQDLQPRKDGGQALIDGKGGQSRVVLIPVGLWAKLMA 186 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 + L + +F R K L + ++Q G+ T+AH LRH+ ATH Sbjct: 187 FQSLRSPHTD-----AVFYSRRQKELARSRIHQIVKQAALDAGINPKTSAHWLRHAHATH 241 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIY 298 L NG D+ +Q LGH ++TTQ Y Sbjct: 242 SLENGCDISLLQQSLGHSDITTTQRY 267 >gi|241992592|gb|ACS73649.1| IntI1 [uncultured bacterium] Length = 337 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 78/310 (25%), Positives = 127/310 (40%), Gaps = 58/310 (18%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 33 TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 83 LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207 + LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191 Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +A + F + + P +R Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALEREYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT I Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311 Query: 298 YTNVNSKNGG 307 YT+V G Sbjct: 312 YTHVLKVGGA 321 >gi|226949603|ref|YP_002804694.1| site-specific recombinase, phage integrase family [Clostridium botulinum A2 str. Kyoto] gi|226843121|gb|ACO85787.1| site-specific recombinase, phage integrase family [Clostridium botulinum A2 str. Kyoto] Length = 331 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 79/307 (25%), Positives = 143/307 (46%), Gaps = 33/307 (10%) Query: 4 NNLPE---IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 N LPE +V+ ++ ++ Q +L + +++ GLS TL++Y + +IF + + I Sbjct: 42 NILPEETGLVTSDIEEKLQIYLASKKLD-GLSIETLKNYRYN---LIIFADYLRKPLAAI 97 Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 +T+ ++R F+ R + + S+ +S +KSF +L + ++ ++ K Sbjct: 98 ETM------DLRMFLGAR-CKDMKQSSVNGQISILKSFFGWLADEEYIPKNPAKKLKQTK 150 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 + + + L E++A LL + ET R A+ L G R+ E + + Sbjct: 151 QPKRVRKPLTEEEA------ELLRQACETD----RQKALTEFLISTGCRLDEVFKVNKDD 200 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP--- 237 I + +L I GKGDK R V + K +L+ Y D N P +P Sbjct: 201 INWHEMSLFIVGKGDKERKV-YFNTKAKILLKKYLFSREDDN-----PALFVTSKRPYHR 254 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L QR +++ G+ S H RHSFAT+ +++G + IQ ++GH +TTQI Sbjct: 255 LGKRSIQREFKKIANIAGIEKSIHPHLFRHSFATYKINSGMPMPIIQHLMGHESPATTQI 314 Query: 298 YTNVNSK 304 Y ++ + Sbjct: 315 YAQLSEE 321 >gi|332662500|ref|YP_004445288.1| integrase family protein [Haliscomenobacter hydrossis DSM 1100] gi|332331314|gb|AEE48415.1| integrase family protein [Haliscomenobacter hydrossis DSM 1100] Length = 355 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 68/248 (27%), Positives = 114/248 (45%), Gaps = 26/248 (10%) Query: 61 QTIRQLSYTEIRA-FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119 + + +L + +R+ F+ K+ + +L ++ +K + + + KR E + Sbjct: 118 KAVNELDSSRLRSYFLYCTNILKLSENTLHSRINAVKFYFEQVLKR----EKFFFEIPRP 173 Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 KK + LP+ +N K L + V + H T +L L YG GLR+SE ++L Sbjct: 174 KKPSILPKVINAKDIKKLFE-VTTNLKHNT---------MLKLCYGMGLRVSEIVNLKIT 223 Query: 180 NIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 +I D L++ + KG K R L S+ + + Y+ + + LF G G Sbjct: 224 DI--DSKNLQVFIERAKGKKDRYANLPESILEQLRAYF------VEYKPKKYLFEGQYGD 275 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + Q+ + + + H LRHSFATHLL G D+ IQ +LGH L TT Sbjct: 276 QYSVRSAQKVFADALKKAKINKNVGIHGLRHSFATHLLEAGTDISFIQELLGHNDLKTTL 335 Query: 297 IYTNVNSK 304 YT+V+ + Sbjct: 336 RYTHVSQQ 343 >gi|148455782|gb|ABQ65129.1| IntI1 [Pseudomonas aeruginosa] Length = 337 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 78/310 (25%), Positives = 127/310 (40%), Gaps = 58/310 (18%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 33 TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 83 LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207 + LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191 Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +A + F + + P +R Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT I Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311 Query: 298 YTNVNSKNGG 307 YT+V G Sbjct: 312 YTHVLKVGGA 321 >gi|9507567|ref|NP_052898.1| integrase [Plasmid R100] gi|17530624|ref|NP_511222.1| integrase [IncN plasmid R46] gi|18466564|ref|NP_569372.1| putative integrase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|31795140|ref|NP_857998.1| DNA integrase [uncultured bacterium] gi|51492558|ref|YP_067855.1| integrase/recombinase [Aeromonas punctata] gi|55275332|ref|YP_133854.1| DNA integrase [uncultured bacterium] gi|58000325|ref|YP_190211.1| integrase [Escherichia coli] gi|60115569|ref|YP_209361.1| integrase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|66968565|ref|YP_245442.1| IntI1 DNA integrase [Pseudomonas aeruginosa] gi|77993248|ref|YP_358838.1| integrase [IncP-1beta multiresistance plasmid pB8] gi|111038080|ref|YP_709167.1| IntI1 integrase [IncP-1 plasmid pKJK5] gi|133756458|ref|YP_001096414.1| Tn21 integrase [Escherichia coli] gi|134044876|ref|YP_001102252.1| integrase IntI1 for transposon Tn21 [Yersinia pestis biovar Orientalis str. IP275] gi|145301311|ref|YP_001144151.1| integrase/recombinase [Aeromonas salmonicida subsp. salmonicida A449] gi|156144910|ref|YP_001427371.1| integrase [Pseudomonas aeruginosa] gi|160431700|ref|YP_001552088.1| integrase [Salmonella enterica subsp. enterica serovar Dublin] gi|165938049|ref|ZP_02226609.1| integrase/recombinase (E2 protein) [Yersinia pestis biovar Orientalis str. IP275] gi|170650836|ref|YP_001740003.1| integrase/recombinase [Escherichia coli SMS-3-5] gi|187736864|ref|YP_001816602.1| IntI1 [Escherichia coli 1520] gi|190410293|ref|YP_001965796.1| intI1 [Klebsiella pneumoniae] gi|190570443|ref|YP_001966865.1| integrase [Aeromonas hydrophila] gi|190576895|ref|YP_001966227.1| IntI1 integrase [Klebsiella pneumoniae] gi|194430536|ref|ZP_03063005.1| integrase/recombinase [Escherichia coli B171] gi|194439843|ref|ZP_03071908.1| integrase/recombinase [Escherichia coli 101-1] gi|194733854|ref|YP_002112947.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|209901149|ref|YP_002286930.1| integrase/recombinase [Klebsiella pneumoniae] gi|215528097|ref|YP_002332850.1| integrase [Klebsiella pneumoniae] gi|226807711|ref|YP_002791406.1| IntI1 [Enterobacter cloacae] gi|226807858|ref|YP_002791507.1| IntI1 integrase [Enterobacter cloacae] gi|226810024|ref|YP_002791719.1| IntI1 [Enterobacter cloacae] gi|226810139|ref|YP_002791835.1| IntI1 integrase [Enterobacter cloacae] gi|256367791|ref|YP_003108348.1| integrase/recombinase [Escherichia coli] gi|284000137|ref|YP_003377824.1| integrase IntL [Escherichia coli O26:H-] gi|297622240|ref|YP_003675796.1| IntI1 [Klebsiella oxytoca KOX105] gi|300819973|ref|ZP_07100154.1| integron integrase [Escherichia coli MS 107-1] gi|300906153|ref|ZP_07123870.1| integron integrase [Escherichia coli MS 84-1] gi|300955292|ref|ZP_07167681.1| integron integrase [Escherichia coli MS 175-1] gi|301302513|ref|ZP_07208643.1| integron integrase [Escherichia coli MS 124-1] gi|301329501|ref|ZP_07222300.1| integron integrase [Escherichia coli MS 78-1] gi|305696852|ref|YP_003864166.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|310286416|ref|YP_003937677.1| integrase/recombinase [Escherichia coli] gi|313107841|ref|ZP_07794014.1| integrase/recombinase (E2 protein) [Pseudomonas aeruginosa 39016] gi|330011345|ref|ZP_08307041.1| integron integrase [Klebsiella sp. MS 92-3] gi|331680833|ref|ZP_08381473.1| integrase/recombinase (E2 protein) [Escherichia coli H299] gi|50402171|sp|P62590|INT2_ECOLX RecName: Full=Integrase/recombinase; AltName: Full=E2 protein gi|50402172|sp|P62591|INT2_PSEAE RecName: Full=Integrase/recombinase; AltName: Full=E2 protein gi|50402173|sp|P62592|INT2_SALTI RecName: Full=Integrase/recombinase; AltName: Full=E2 protein gi|2120150|pir||I39499 integrase - Acinetobacter baumannii gi|6752460|gb|AAF27722.1|AF156486_1 integrase INTI1 [Klebsiella pneumoniae] gi|7381448|gb|AAF61482.1|AF191564_1 integrase [Pseudomonas aeruginosa] gi|13940487|gb|AAK50385.1|AF313472_1 IntI1 integrase [Pseudomonas aeruginosa] gi|15384483|gb|AAK96393.1|AF313471_1 IntI1 integrase [Pseudomonas aeruginosa] gi|18958400|gb|AAL82587.1|AF355189_1 integrase IntI1 [Pseudomonas aeruginosa] gi|48206|emb|CAA31361.1| unnamed protein product [Escherichia coli] gi|151300|gb|AAA25857.1| integrase [Pseudomonas aeruginosa] gi|151817|gb|AAB59081.1| IntI1 integrase [Plasmid R46] gi|530814|gb|AAC44315.1| DNA integrase [Pseudomonas aeruginosa] gi|596251|gb|AAA56784.1| integrase [Acinetobacter baumannii] gi|3088617|gb|AAC14727.1| DNA integrase [Plasmid NR79] gi|3513661|gb|AAC33911.1| IntI1 DNA integrase [Escherichia coli] gi|5103166|dbj|BAA78802.1| integrase for In2 [Plasmid R100] gi|16357506|gb|AAK60185.2| integrase IntI1 [Escherichia coli] gi|16505880|emb|CAD09758.1| putative integrase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|17342661|gb|AAL13418.1| integrase [IncN plasmid R46] gi|21898667|gb|AAM77079.1| integrase [uncultured bacterium] gi|29329827|emb|CAD57181.1| integrase [Aeromonas salmonicida] gi|30349168|gb|AAP20904.1| integrase [Escherichia coli] gi|30349183|gb|AAP20918.1| integrase [Escherichia coli] gi|30350250|gb|AAP22972.1| IntI1 [Escherichia coli] gi|31746384|emb|CAD97509.1| DNA integrase [uncultured bacterium] gi|33086394|emb|CAD80250.1| integrase class1 [Pseudomonas aeruginosa] gi|34556020|emb|CAD57194.1| integrase [Aeromonas salmonicida] gi|40645553|dbj|BAD06398.1| DNA integrase [Klebsiella pneumoniae] gi|42391698|dbj|BAD08688.1| DNA integrase [Klebsiella pneumoniae] gi|42543943|dbj|BAD11025.1| DNA integrase [Klebsiella pneumoniae] gi|45502089|emb|CAF31510.1| IntI1 DNA integrase [Salmonella enterica] gi|45758127|gb|AAS76339.1| integrase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|45925935|gb|AAS79108.1| integrase [Shigella flexneri 2a] gi|45934117|gb|AAS79142.1| integrase [Pseudomonas aeruginosa] gi|46559086|emb|CAE52510.2| DNA integrase [Pseudomonas aeruginosa] gi|47716827|gb|AAT37602.1| integrase [Escherichia coli] gi|48526060|gb|AAT45232.1| integrase [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|51470601|emb|CAG15092.1| integrase/recombinase [Aeromonas caviae] gi|54300645|gb|AAV32837.1| integrase [Pseudomonas aeruginosa] gi|54887450|emb|CAG34228.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|54887458|emb|CAG34236.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|54969638|emb|CAG27804.1| DNA integrase [uncultured bacterium] gi|66259843|gb|AAY43107.1| integrase [Enterobacter cloacae] gi|66862647|emb|CAI46945.1| IntI1 DNA integrase [Pseudomonas aeruginosa] gi|71361872|gb|AAZ30042.1| Integrase [Enterobacter cloacae] gi|72416446|emb|CAF31402.2| type I integrase [Pseudomonas aeruginosa] gi|77734001|emb|CAI10765.1| integrase [IncP-1beta multiresistance plasmid pB8] gi|81072647|gb|ABB55351.1| IntI1 integrase [Enterobacter cloacae] gi|87295510|gb|ABD37051.1| IntI1 [Escherichia coli] gi|88702681|gb|ABD49194.1| integrase [Achromobacter xylosoxidans] gi|88911246|gb|ABD58919.1| IntI1 [Pseudomonas aeruginosa] gi|89033269|gb|ABD59947.1| Tn21 integrase [Escherichia coli] gi|89211896|gb|ABD63310.1| IntI1 [Bordetella bronchiseptica] gi|89243390|gb|ABD64875.1| integrase [Aeromonas hydrophila] gi|89330180|emb|CAJ84004.1| integrase [Salmonella enterica subsp. enterica serovar Keurmassar] gi|92112119|gb|ABE73722.1| integrase [Acidovorax sp. MUL2G8] gi|92112131|gb|ABE73754.1| integrase [Burkholderiales bacterium MUL2G11] gi|110264479|gb|ABG56842.1| IntI1 integrase [Klebsiella pneumoniae] gi|110781085|emb|CAK02669.1| IntI1 integrase [IncP-1 plasmid pKJK5] gi|112553509|gb|ABI20478.1| integrase [uncultured bacterium] gi|114147178|gb|ABI50465.1| integrase [Klebsiella pneumoniae] gi|114147192|gb|ABI50478.1| IntI1 [Klebsiella pneumoniae] gi|116294895|gb|ABJ98410.1| IntI1 [Shigella flexneri 5] gi|118402696|emb|CAI94353.1| type I integrase [Pseudomonas aeruginosa] gi|118402704|emb|CAI94360.1| type I integrase [Pseudomonas aeruginosa] gi|118402713|emb|CAI94368.1| type I integrase [Pseudomonas aeruginosa] gi|118402722|emb|CAI94376.1| type I integrase [Pseudomonas aeruginosa] gi|119116290|emb|CAH10848.2| integrase-recombinase [Pseudomonas aeruginosa] gi|133905410|gb|ABO42172.1| integrase IntI1 for transposon Tn21 [Yersinia pestis biovar Orientalis str. IP275] gi|142856088|gb|ABO92403.1| integrase/recombinase [Aeromonas salmonicida subsp. salmonicida A449] gi|145848971|emb|CAM91521.1| integrase intiI [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|146151087|gb|ABQ02853.1| intI1 [Klebsiella pneumoniae] gi|148455768|gb|ABQ65126.1| IntI1 [Pseudomonas aeruginosa] gi|156104633|emb|CAO91764.1| integrase [Pseudomonas aeruginosa] gi|159885569|dbj|BAF93171.1| integrase [Salmonella enterica subsp. enterica serovar Dublin] gi|165914072|gb|EDR32689.1| integrase/recombinase (E2 protein) [Yersinia pestis biovar Orientalis str. IP275] gi|165928622|gb|ABY74390.1| integrase [Klebsiella pneumoniae] gi|170293866|gb|ACB13001.1| IntI1 [Hydrogenophaga sp. PL2G6] gi|170522112|gb|ACB20289.1| integrase/recombinase [Escherichia coli SMS-3-5] gi|170785722|gb|ACB37786.1| IntI1 [Klebsiella pneumoniae] gi|172051446|emb|CAP07788.1| IntI1 [Escherichia coli] gi|182382566|gb|ACB87555.1| DNA integrase [Pseudomonas aeruginosa] gi|190683007|gb|ACE81789.1| IntI1 [Enterobacter cloacae] gi|192822646|gb|ACF06155.1| class 1 integrase [Klebsiella pneumoniae] gi|193409924|gb|ACF17979.1| IntI1 [Escherichia coli] gi|194326135|emb|CAQ64786.1| intergrase [Cloning vector pRG930cm] gi|194359398|gb|AAK59383.2| DNA integrase [Pseudomonas aeruginosa] gi|194411419|gb|EDX27772.1| integrase/recombinase [Escherichia coli B171] gi|194421233|gb|EDX37255.1| integrase/recombinase [Escherichia coli 101-1] gi|194709356|gb|ACF88579.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197359178|gb|ACH69795.1| class I integrase [Pseudomonas aeruginosa] gi|207581351|gb|ACI24747.1| integrase [Salmonella enterica subsp. enterica serovar Newport] gi|208436691|gb|ACI28900.1| IntI1 [Pseudomonas aeruginosa] gi|209574100|gb|ACI62988.1| integrase/recombinase [Klebsiella pneumoniae] gi|225730198|gb|ACO24910.1| integrase [Enterobacter aerogenes] gi|225730210|gb|ACO24921.1| integrase [Escherichia coli] gi|226425937|gb|ACO54030.1| IntI1 [Enterobacter cloacae] gi|226426085|gb|ACO54178.1| IntI1 integrase [Enterobacter cloacae] gi|226426251|gb|ACO54343.1| IntI1 [Enterobacter cloacae] gi|226426366|gb|ACO54458.1| IntI1 integrase [Enterobacter cloacae] gi|227809552|gb|ACP40994.1| DNA integrase intI1 [Shigella flexneri] gi|228480728|gb|ACQ42055.1| integrase/recombinase [Escherichia coli] gi|238773820|dbj|BAH66385.1| integrase [Pseudomonas aeruginosa] gi|247712942|gb|ACT09123.1| IntI1 [Pseudomonas aeruginosa] gi|253559511|gb|ACT32445.1| class I integrase [Xanthomonas oryzae pv. oryzae] gi|253559513|gb|ACT32446.1| class I integrase [Xanthomonas oryzae pv. oryzae] gi|254914163|gb|ACT83767.1| integrase IntI1 [Escherichia coli] gi|257043820|gb|ACV33237.1| DNA integrase [Enterobacter cloacae] gi|257043842|gb|ACV33257.1| DNA integrase [Pseudomonas aeruginosa] gi|257043850|gb|ACV33264.1| DNA integrase [Pseudomonas aeruginosa] gi|257123763|gb|ACV41753.1| IntI1 [Pseudomonas aeruginosa] gi|260677486|gb|ACX47970.1| integrase [Pseudomonas aeruginosa] gi|267850619|gb|ACY82390.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|281323234|gb|ADA60225.1| integrase/recombinase [Klebsiella oxytoca] gi|281600419|gb|ADA73403.1| Integrase/recombinase [Shigella flexneri 2002017] gi|283445077|gb|ADB20421.1| integrase IntI1 [Escherichia coli O26:H-] gi|284923819|emb|CBG36917.1| integrase [Escherichia coli 042] gi|289064109|gb|ADC80448.1| class 1 integron integrase IntI1 [Pseudomonas alcaligenes] gi|289064116|gb|ADC80454.1| class 1 integron integrase IntI1 [Pseudomonas oryzihabitans] gi|289064135|gb|ADC80472.1| class 1 integron integrase IntI1 [Comamonas testosteroni] gi|289065278|gb|ADC80781.1| IntI1 [Escherichia coli] gi|289065352|gb|ADC80852.1| IntI1 [Escherichia coli] gi|289551904|gb|ADD10607.1| IntI1 [Pseudomonas putida] gi|290964843|emb|CBH41111.1| class 1 integrase [Kluyvera georgiana] gi|295981465|emb|CBL87884.1| IntI1 integrase [Pseudomonas sp. Tik3] gi|296492059|gb|ADH29561.1| DNA integrase IntI1 [Klebsiella oxytoca KOX105] gi|299483209|gb|ADJ19347.1| IntI1 [Enterobacter cloacae] gi|300317797|gb|EFJ67581.1| integron integrase [Escherichia coli MS 175-1] gi|300402043|gb|EFJ85581.1| integron integrase [Escherichia coli MS 84-1] gi|300527473|gb|EFK48535.1| integron integrase [Escherichia coli MS 107-1] gi|300842038|gb|EFK69798.1| integron integrase [Escherichia coli MS 124-1] gi|300844364|gb|EFK72124.1| integron integrase [Escherichia coli MS 78-1] gi|302127772|emb|CBO78185.1| class 1 integrase [Salmonella enterica subsp. enterica serovar Enteritidis] gi|304376153|dbj|BAJ15315.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|308826745|emb|CBX36000.1| Integrase/recombinase [Escherichia coli] gi|310880516|gb|EFQ39110.1| integrase/recombinase (E2 protein) [Pseudomonas aeruginosa 39016] gi|312261322|gb|ADQ54342.1| integrase [Klebsiella pneumoniae] gi|315252947|gb|EFU32915.1| integron integrase [Escherichia coli MS 85-1] gi|315667013|gb|ADU55733.1| intI1 [Pseudomonas sp. 11BF10] gi|317109804|gb|ADU90743.1| Integrase/recombinase [uncultured bacterium] gi|321271381|gb|ADW79471.1| class 1 integron integrase IntI1 [Escherichia coli] gi|323903319|gb|ADY11083.1| IntI1 DNA integrase [Escherichia coli] gi|323959138|gb|EGB54804.1| integron integrase [Escherichia coli H489] gi|324020458|gb|EGB89677.1| integron integrase [Escherichia coli MS 117-3] gi|324110986|gb|EGC04975.1| integron integrase [Escherichia fergusonii B253] gi|325491815|gb|ADZ16819.1| class 1 integrase [Pseudomonas fluorescens] gi|325495829|gb|EGC93689.1| integrase [Escherichia fergusonii ECD227] gi|327536588|gb|AEA95421.1| integron integrase IntI1 [Salmonella enterica subsp. enterica serovar Dublin] gi|327536704|gb|AEA95536.1| integron integrase IntI1 [Salmonella enterica subsp. enterica serovar Dublin] gi|328534216|gb|EGF60841.1| integron integrase [Klebsiella sp. MS 92-3] gi|331081821|gb|EGI52979.1| integrase/recombinase (E2 protein) [Escherichia coli H299] gi|332751435|gb|EGJ81838.1| integron integrase family protein [Shigella flexneri 2747-71] gi|332752605|gb|EGJ82991.1| integron integrase family protein [Shigella flexneri 2747-71] gi|332758761|gb|EGJ89080.1| integron integrase family protein [Shigella flexneri 2747-71] gi|332765272|gb|EGJ95498.1| integron integrase family protein [Shigella flexneri K-671] gi|332765338|gb|EGJ95557.1| integron integrase family protein [Shigella flexneri K-671] gi|333005791|gb|EGK25309.1| integron integrase family protein [Shigella flexneri K-218] gi|333006038|gb|EGK25552.1| integron integrase family protein [Shigella flexneri VA-6] gi|333008515|gb|EGK27985.1| integron integrase family protein [Shigella flexneri K-272] gi|333011761|gb|EGK31167.1| integron integrase family protein [Shigella flexneri K-227] gi|333012763|gb|EGK32142.1| integron integrase family protein [Shigella flexneri K-304] gi|333020622|gb|EGK39882.1| integron integrase family protein [Shigella flexneri K-227] Length = 337 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 78/310 (25%), Positives = 127/310 (40%), Gaps = 58/310 (18%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 33 TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 83 LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207 + LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191 Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +A + F + + P +R Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT I Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311 Query: 298 YTNVNSKNGG 307 YT+V G Sbjct: 312 YTHVLKVGGA 321 >gi|283479611|emb|CAY75527.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163] Length = 344 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 66/254 (25%), Positives = 122/254 (48%), Gaps = 18/254 (7%) Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLVD 139 + + R+ + +L ++ + ++L K+ + + ++ + LPR L+ +Q +V+ Sbjct: 98 EPLSPRTQRTALQPLQVWFRWLAKQNLILANPAADLELPRLEKHLPRTILSVEQVEDIVN 157 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR 198 L+T R+ A+L LL+ G+R E L + + L I QGKG + R Sbjct: 158 LCDLNTLQ-----GMRDRALLELLWSTGIRRGEVARLETWSADFSRKILTIVQGKGKQDR 212 Query: 199 IVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLF---RGIRGKPLNPGVFQRYIRQLRRYL 254 ++P+ + Y +++ P + + LF G+ G N G+ + LR Sbjct: 213 VIPVGERALWWLRHYLHEVRPEIVAVAGCKALFVAMDGVAGLTAN-GITHAVVPYLR-AA 270 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ + RH+ AT +L NG DLR IQ++LGH + +TQIYT V+ K + ++ Sbjct: 271 GIE-KGSCXLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIKA----LQAVH 325 Query: 315 DQTHPSITQKDKKN 328 THP+ + D ++ Sbjct: 326 ASTHPAEREADSEH 339 >gi|238897940|ref|YP_002923620.1| integrase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465698|gb|ACQ67472.1| integrase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 336 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 64/220 (29%), Positives = 99/220 (45%), Gaps = 25/220 (11%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKK-------SNSLPRALNEKQALTLVDNVLLH 144 L IK + + ++ N +++N+K+ + KQ T +D Sbjct: 93 LCAIKGVAEEARASRLMDADNYHDVKNIKRIRGARISRGRMLECAEIKQLFTFLD----- 147 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 +T R++A++ L++GCGLR SE L +I + + + I GKG+K RI + P Sbjct: 148 --IQTTGAAIRDAALISLMFGCGLRRSEVADLDIDHIDFENNKIDIHGKGNKERINYMPP 205 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIR------GKPLNPGVFQRYIRQLRRYLGLPL 258 K + + D D + PLF IR L I+QL L L Sbjct: 206 ETAKRMCLWVDSVRGDHS----GPLFTRIRKNDDVTSDRLTTNGIGFIIKQLVTKLSLK- 260 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 S T H LR S+A+ LL NG D+ +++ LGH + TTQ Y Sbjct: 261 SFTPHDLRRSYASLLLENGEDILTVKEALGHASVVTTQQY 300 >gi|155024|gb|AAA72104.1| integrase [Shigella sonnei] Length = 337 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 78/310 (25%), Positives = 127/310 (40%), Gaps = 58/310 (18%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 33 TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 83 LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207 + LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191 Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +A + F + + P +R Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT I Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311 Query: 298 YTNVNSKNGG 307 YT+V G Sbjct: 312 YTHVLKVGGA 321 >gi|148243783|ref|YP_001220023.1| phage integrase family protein [Acidiphilium cryptum JF-5] gi|325113224|ref|YP_004277170.1| phage integrase family protein [Acidiphilium multivorum AIU301] gi|325113258|ref|YP_004277204.1| phage integrase family protein [Acidiphilium multivorum AIU301] gi|326402547|ref|YP_004282628.1| phage integrase family protein [Acidiphilium multivorum AIU301] gi|146400346|gb|ABQ28881.1| phage integrase family protein [Acidiphilium cryptum JF-5] gi|325049408|dbj|BAJ79746.1| phage integrase family protein [Acidiphilium multivorum AIU301] gi|325052691|dbj|BAJ83028.1| phage integrase family protein [Acidiphilium multivorum AIU301] gi|325052725|dbj|BAJ83062.1| phage integrase family protein [Acidiphilium multivorum AIU301] Length = 330 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 79/302 (26%), Positives = 132/302 (43%), Gaps = 25/302 (8%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQ-TIRQLSYTEIRAFISKRRTQKIGD-RSLK 89 S+ T+ Y DT + L+ A +K + T+ + + F++ T + RS Sbjct: 25 SRHTVAGYR-DTFRLLLRYASARRKKPPVNLTVEDIDADLVADFLAHTETARGNSARSRN 83 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT---- 145 L+ I+SF +++ +T + +L+ + + ++P K+A+T +D + Sbjct: 84 TRLAAIRSFFRFVA---MTDPTWLLHCQRIL---AMPNKRYVKRAVTFLDAEEMAALLAA 137 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLP 204 T W R+ A+L L GLR SE + LT ++ + + +R GKG K R PL Sbjct: 138 PDRTTWAGRRDHALLLLAVQTGLRASELVGLTRGDVVLGTGAHIRCMGKGRKERATPLRR 197 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ--LRRYLGLPL---- 258 K + + + + PLF IRG+ L+ + +R+ L P Sbjct: 198 ETAKLLATW-----IGNDKDEGKPLFPSIRGERLSRDALEHLVRKHCLTASRACPSIGTK 252 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 T HTLRHS A LL +G D I LGH + TTQIY + + + + + Sbjct: 253 QVTPHTLRHSTAMDLLHHGVDPAVIALWLGHENVETTQIYIHADMRMKEKALARVAAPAT 312 Query: 319 PS 320 PS Sbjct: 313 PS 314 >gi|260462714|ref|ZP_05810920.1| integrase family protein [Mesorhizobium opportunistum WSM2075] gi|259031620|gb|EEW32890.1| integrase family protein [Mesorhizobium opportunistum WSM2075] Length = 280 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 81/153 (52%), Gaps = 2/153 (1%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEY 213 ++ A L + YG GLR++E L ++ ++ LR++ GKG + R L + + + E+ Sbjct: 90 KHQAALSVAYGAGLRVAEVSMLKVTDLDSERMLLRVERGKGGRYRNAMLSEDLLRLLREW 149 Query: 214 YDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 + + ++ LF G KP++ R + + + + HTLRHSFATH Sbjct: 150 WKVGRQQGVMHRDGWLFPGQHAMKPISTRQLYRIVVEAAQAADIAKRVGPHTLRHSFATH 209 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 LL +G D+R IQ +LGH +L+ T +Y V ++ Sbjct: 210 LLEDGTDIRIIQVLLGHAKLNNTALYAKVATRT 242 >gi|170293839|gb|ACB12975.1| IntI 1 [Aquabacterium sp. PL1F5] gi|170293900|gb|ACB13034.1| IntI1 [Imtechium sp. PL2H3] Length = 337 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 78/310 (25%), Positives = 127/310 (40%), Gaps = 58/310 (18%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 33 TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 83 LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207 + LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191 Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +A + F + + P +R Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT I Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311 Query: 298 YTNVNSKNGG 307 YT+V G Sbjct: 312 YTHVLKVGGA 321 >gi|8118290|gb|AAF72980.1|AF255921_1 recombinase [Shigella flexneri] gi|152063|gb|AAA91585.1| recombinase [Plasmid RGN238] Length = 337 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 78/310 (25%), Positives = 127/310 (40%), Gaps = 58/310 (18%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 33 TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 83 LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207 + LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191 Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +A + F + + P +R Sbjct: 192 LSRARAWWLKDQAQGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT I Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311 Query: 298 YTNVNSKNGG 307 YT+V G Sbjct: 312 YTHVLKVGGA 321 >gi|2668483|dbj|BAA23767.1| integrase [Pseudomonas aeruginosa] Length = 337 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 82/327 (25%), Positives = 135/327 (41%), Gaps = 59/327 (18%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 33 TEQAYVHCVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 83 LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207 + LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191 Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +A + F + + P +R Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT I Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311 Query: 298 YTNVNSKNGGDWMMEIYDQTHPSITQK 324 YT+V K GG + D P +++ Sbjct: 312 YTHV-LKVGGAGVRSPLDALPPLTSER 337 >gi|117926143|ref|YP_866760.1| phage integrase family protein [Magnetococcus sp. MC-1] gi|117609899|gb|ABK45354.1| phage integrase family protein [Magnetococcus sp. MC-1] Length = 153 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/141 (35%), Positives = 70/141 (49%), Gaps = 7/141 (4%) Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222 +Y CGLRI+E L +I + LRI GKG+K R++PL S Y L Sbjct: 1 MYACGLRINEVRPLEVSSIDGQKQLLRIIGKGNKERLIPLPTST------LYGLRSLWRE 54 Query: 223 LNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281 LF G ++ V R + R GLP T H LRHS+AT L+ N DLR Sbjct: 55 HRHPRFLFPNKGGTNAVHSCVLYRTFKDALREAGLPSEITPHVLRHSYATRLMENDVDLR 114 Query: 282 SIQSILGHFRLSTTQIYTNVN 302 + Q ++GH + +T IY+++ Sbjct: 115 TTQILMGHSSIKSTLIYSHLT 135 >gi|241992559|gb|ACS73625.1| IntI1 [uncultured bacterium] Length = 315 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 77/304 (25%), Positives = 126/304 (41%), Gaps = 58/304 (19%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 33 TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 83 LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207 + LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191 Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +A + F + + P +R Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT I Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311 Query: 298 YTNV 301 YT+V Sbjct: 312 YTHV 315 >gi|13488301|ref|NP_085852.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|14028101|dbj|BAB54693.1| integrase/recombinase [Mesorhizobium loti MAFF303099] Length = 336 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 78/303 (25%), Positives = 131/303 (43%), Gaps = 20/303 (6%) Query: 11 SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70 SF +L +R + ++L +R +S T+ +Y R L F + + + L Sbjct: 9 SFAVLLQRY-FTEHLTNQRAVSPRTIAAYRDTFRLLLRFAERHIGKAPANVELLDLDSEL 67 Query: 71 IRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 I AF+ R + G RS LS I+SFL Y +T + ++++ ++P+ Sbjct: 68 ILAFLDHLERERDNGPRSRNVRLSAIRSFLHYASHHDVTA------LPTIQRALAIPQKR 121 Query: 130 NEKQALTLVD----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDD 184 +K L + +L ++ +W R+ A +Y G R+SE + L + ++D Sbjct: 122 YDKPLLEFLSREEMQAILDAPNQLEWTGRRDQAFFTTMYNTGGRVSELIGLRVSDVVLDG 181 Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 + + I GKG K R VPL S + + P G+ N V Q Sbjct: 182 SACIHINGKGRKQRTVPLWRSSANLLRAWRREAGDVAGSAAFFPNRDGVAMTRSN--VTQ 239 Query: 245 R---YIRQL--RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 R Y+++ ++ L + + HT RHS A HLL +G D+ I LGH +TT Y Sbjct: 240 RLALYVKKAAEKKPQLLAKTISPHTFRHSTAMHLLQSGVDISVIALWLGHESPTTTHNYL 299 Query: 300 NVN 302 + Sbjct: 300 QAD 302 >gi|213155654|ref|YP_002317699.1| IntI1 integrase [Acinetobacter baumannii AB0057] gi|301347157|ref|ZP_07227898.1| IntI1 integrase [Acinetobacter baumannii AB056] gi|213054814|gb|ACJ39716.1| IntI1 integrase [Acinetobacter baumannii AB0057] Length = 344 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 84/183 (45%), Gaps = 37/183 (20%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207 LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198 Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 +A + F + + P +R + FQ Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 R ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKV 318 Query: 305 NGG 307 G Sbjct: 319 GGA 321 >gi|120597821|ref|YP_962395.1| phage integrase family protein [Shewanella sp. W3-18-1] gi|120598661|ref|YP_963235.1| phage integrase family protein [Shewanella sp. W3-18-1] gi|120557914|gb|ABM23841.1| phage integrase family protein [Shewanella sp. W3-18-1] gi|120558754|gb|ABM24681.1| phage integrase family protein [Shewanella sp. W3-18-1] Length = 287 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 69/280 (24%), Positives = 133/280 (47%), Gaps = 29/280 (10%) Query: 33 KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS-LKRS 91 +++L+ Y TR ++ A ++ Q + ++ ++ A+ ++ R+ LK Sbjct: 11 EISLRGYSARTRNAYLY-AITQLQQYANQPLDNITDEQLTAYFRYLNLERHHSRATLKLQ 69 Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 L+GI F +++ KR T + ++ K+ + LP+ L+ + + +L H Sbjct: 70 LNGIHFFYEHVLKRDFTIQLSLP-----KRPHKLPQLLSCQD----IAALLYHCQ----- 115 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI 210 + A+L L YGCGLR+SE + +I + L++ QGKG R V + P++ + Sbjct: 116 -SLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGACDRWVIISPTLLTLL 174 Query: 211 LEYYDLC-PFDLNLNIQLPLFRGIRGK---PLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 +Y+ P + LF PL+ F++ + + R G+ + H+LR Sbjct: 175 RQYWQAYHPVEW-------LFASTYHDVVYPLHESTFRKALAKAARLAGITKPCSPHSLR 227 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 H++ATH L G L +Q+ LGH + +T+ Y + + + G Sbjct: 228 HAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPELG 267 >gi|241992614|gb|ACS73664.1| IntI1 [uncultured bacterium] Length = 315 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 77/304 (25%), Positives = 126/304 (41%), Gaps = 58/304 (19%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 33 TEQAYVHRVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 83 LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207 + LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191 Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +A + F + + P +R Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT I Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311 Query: 298 YTNV 301 YT+V Sbjct: 312 YTHV 315 >gi|68262570|emb|CAJ13499.1| integrase/recombinase [Klebsiella pneumoniae] Length = 320 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 84/182 (46%), Gaps = 37/182 (20%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207 LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198 Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 +A + F + + P +R + FQ Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 R ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKV 318 Query: 305 NG 306 G Sbjct: 319 GG 320 >gi|116623840|ref|YP_825996.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116227002|gb|ABJ85711.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 297 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 89/194 (45%), Gaps = 26/194 (13%) Query: 120 KKSNSLPRALNEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 K+ LP L+ + L+ + LLH + +L LY G+R +E L Sbjct: 94 KRHRKLPEILSPDEVALLIGSASNLLHQT------------MLMTLYSTGVRRAELCRLK 141 Query: 178 PQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 +I + + I QGKG R VPL P + + + Y+ + + LF G Sbjct: 142 SADIDSQRMMVHIRQGKGGHDRDVPLSPRLLETLRVYWRW------MKPKTYLFPGTVNN 195 Query: 237 -----PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291 P+ V RQ + G+ + HTLRH FA+HLL G DLR+IQ +LGH + Sbjct: 196 WRADVPITTKVPWEACRQAAQRAGITKHVSPHTLRHCFASHLLEAGTDLRTIQMLLGHAK 255 Query: 292 LSTTQIYTNVNSKN 305 L T +Y +++ K+ Sbjct: 256 LEHTAMYLHLSRKH 269 >gi|332875882|ref|ZP_08443671.1| integron integrase [Acinetobacter baumannii 6014059] gi|332735920|gb|EGJ66958.1| integron integrase [Acinetobacter baumannii 6014059] Length = 318 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 78/310 (25%), Positives = 127/310 (40%), Gaps = 58/310 (18%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 14 TEQAYVNWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 63 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 64 LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 112 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207 + LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 113 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 172 Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +A + F + + P +R Sbjct: 173 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 232 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT I Sbjct: 233 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 292 Query: 298 YTNVNSKNGG 307 YT+V G Sbjct: 293 YTHVLKVGGA 302 >gi|27383511|ref|NP_775042.1| class I integron integrase [Citrobacter freundii] gi|32455549|ref|NP_862305.1| DNA integrase IntI1 [Corynebacterium glutamicum] gi|133756208|ref|YP_001096358.1| hypothetical protein pLEW517_p33 [Escherichia coli] gi|169797581|ref|YP_001715374.1| integrase/recombinase (E2 protein) [Acinetobacter baumannii AYE] gi|200388793|ref|ZP_03215405.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|226807703|ref|YP_002791398.1| IntI1 [Enterobacter cloacae] gi|226810014|ref|YP_002791708.1| IntI1 [Enterobacter cloacae] gi|297622202|ref|YP_003675754.1| IntIA [Klebsiella oxytoca KOX105] gi|301028321|ref|ZP_07191578.1| integron integrase [Escherichia coli MS 196-1] gi|317050213|ref|YP_004111329.1| integron integrase [Desulfurispirillum indicum S5] gi|5107035|gb|AAD39931.1|AF133699_1 integron In50 integrase [Pseudomonas aeruginosa] gi|9836716|gb|AAG00280.1|AF164956_12 DNA integrase IntI1 [Corynebacterium glutamicum] gi|10185692|gb|AAG14404.1|AF188331_3 putative integrase [Shigella flexneri] gi|12719023|gb|AAK02045.1|AF261825_14 integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|2385351|emb|CAA75043.1| int [Corynebacterium glutamicum] gi|3661459|gb|AAC64362.1| class I integrase [Pseudomonas aeruginosa] gi|4063851|gb|AAC98492.1| integrase [Salmonella typhimurium DT104] gi|5420398|emb|CAB46685.1| DNA integrase [Pseudomonas aeruginosa] gi|17383996|emb|CAC81318.1| IntI1 DNA integrase [Salmonella typhimurium] gi|17384003|emb|CAC81325.1| IntI1 DNA integrase [Salmonella typhimurium] gi|27261364|gb|AAN87705.1| class I integron integrase [Citrobacter freundii] gi|34556054|emb|CAE46709.1| DNA integrase [Pseudomonas aeruginosa] gi|34556062|emb|CAE46716.1| DNA integrase [Pseudomonas aeruginosa] gi|57208125|emb|CAI40605.1| class 1 integrase [Corynebacterium amycolatum] gi|66277417|gb|AAY44597.1| class 1 integron integrase [Enterobacter cloacae] gi|82653445|emb|CAG23925.2| type I integrase [Pseudomonas aeruginosa] gi|83627316|dbj|BAE54317.1| integrase [Escherichia coli] gi|85376217|gb|ABC70304.1| IntI1 [Pseudomonas aeruginosa] gi|85376219|gb|ABC70305.1| IntI1 [Pseudomonas aeruginosa] gi|90265346|emb|CAJ77028.1| Integrase [Acinetobacter baumannii] gi|110084043|gb|ABG49197.1| hypothetical protein [Escherichia coli] gi|118402688|emb|CAI94346.1| type I integrase [Pseudomonas aeruginosa] gi|118402758|emb|CAI43354.1| integrase/recombinase [Pseudomonas aeruginosa] gi|122891987|gb|ABM67075.1| IntI1 integrase [Aeromonas caviae] gi|148455793|gb|ABQ65133.1| IntI1 [Pseudomonas putida] gi|151564272|gb|ABS17587.1| integrase [Klebsiella pneumoniae] gi|166865480|gb|ABZ01842.1| IntI1 [Salmonella enterica subsp. enterica] gi|169150508|emb|CAM88414.1| Integrase/recombinase (E2 protein) [Acinetobacter baumannii AYE] gi|187369485|dbj|BAG31351.1| class 1 integrase IntI1 [Salmonella enterica subsp. enterica serovar Typhimurium] gi|193783422|emb|CAE81269.2| IntI1 [Klebsiella pneumoniae] gi|199605891|gb|EDZ04436.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|226425929|gb|ACO54022.1| IntI1 [Enterobacter cloacae] gi|226426240|gb|ACO54332.1| IntI1 [Enterobacter cloacae] gi|253558898|gb|ACT32121.1| IntI1 [Pseudomonas putida] gi|255039694|gb|ACT99624.1| IntI1 [Pseudomonas aeruginosa] gi|265509433|gb|ACY75520.1| integrase [Pseudomonas aeruginosa] gi|265509448|gb|ACY75535.1| integrase [Pseudomonas aeruginosa] gi|296492021|gb|ADH29523.1| IntI1 [Klebsiella oxytoca KOX105] gi|297593574|gb|ADI47529.1| IntI1 integrase [Klebsiella pneumoniae] gi|298104544|gb|ADI55012.1| class I integron integrase [Aeromonas caviae] gi|299878615|gb|EFI86826.1| integron integrase [Escherichia coli MS 196-1] gi|312914891|dbj|BAJ38865.1| IntI1 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|312915760|dbj|BAJ39733.1| IntI1 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|316945297|gb|ADU64773.1| integron integrase [Desulfurispirillum indicum S5] gi|321159227|gb|ADW66520.1| DNA integrase [Enterobacter aerogenes] gi|321268198|gb|ADW78905.1| IntI [Escherichia coli] gi|332144420|dbj|BAK19640.1| class 1 integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|332144565|dbj|BAK19780.1| class 1 integrase [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 337 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 78/310 (25%), Positives = 127/310 (40%), Gaps = 58/310 (18%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 33 TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 83 LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207 + LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191 Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +A + F + + P +R Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT I Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311 Query: 298 YTNVNSKNGG 307 YT+V G Sbjct: 312 YTHVLKVGGA 321 >gi|42563728|gb|AAS20532.1| Int1 [Pseudomonas aeruginosa] Length = 337 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 78/310 (25%), Positives = 127/310 (40%), Gaps = 58/310 (18%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 33 TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 83 LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207 + LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191 Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +A + F + + P +R Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT I Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311 Query: 298 YTNVNSKNGG 307 YT+V G Sbjct: 312 YTHVLKVGGA 321 >gi|255655227|ref|ZP_05400636.1| putative tyrosine recombinase [Clostridium difficile QCD-23m63] gi|296451212|ref|ZP_06892953.1| tyrosine recombinase XerD [Clostridium difficile NAP08] gi|296880435|ref|ZP_06904398.1| tyrosine recombinase XerD [Clostridium difficile NAP07] gi|296260033|gb|EFH06887.1| tyrosine recombinase XerD [Clostridium difficile NAP08] gi|296428676|gb|EFH14560.1| tyrosine recombinase XerD [Clostridium difficile NAP07] Length = 304 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 69/289 (23%), Positives = 132/289 (45%), Gaps = 15/289 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE--IRAFIS 76 + ++ ++ ++ LS+ T+ SY D ++++ E I ++I+ + E I +++ Sbjct: 5 EGYIDYIKDKKKLSENTVASYFMDIKKYM--------EYINQKSIKLIDIVENDIISYLI 56 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 K + ++ R +S IKSF YL I T + +++ K L E++ Sbjct: 57 KLEKDNVSIATIARMISSIKSFHDYLFLNHICTNNPAKDIKKPKIKKENINILTEEEIER 116 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L++ L T K I R+ AI +LYG G+++SE + + ++I D + Sbjct: 117 LLNFPKLTTP---KLI--RDKAIFEVLYGTGIKVSELVEMNIEDIDLDIDYIYCNSCCKS 171 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 R++PL + + +Y + + + LF G+ + I++ + Sbjct: 172 QRVIPLCDITKLYLEKYLKEARPKMAVEGEKSLFVSSLGQRFTRQGLWKVIKKYSNLANI 231 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + LRHSFA HLL+ G ++ + ILG+ LS+ Q+Y N KN Sbjct: 232 DKNINPTMLRHSFAIHLLNEGANIAVVSKILGNVNLSSLQVYLNHIDKN 280 >gi|77454860|ref|YP_345728.1| putative transposase [Rhodococcus erythropolis PR4] gi|229492444|ref|ZP_04386248.1| putative transposase [Rhodococcus erythropolis SK121] gi|77019860|dbj|BAE46236.1| putative transposase [Rhodococcus erythropolis PR4] gi|229320673|gb|EEN86490.1| putative transposase [Rhodococcus erythropolis SK121] Length = 341 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 74/282 (26%), Positives = 124/282 (43%), Gaps = 44/282 (15%) Query: 65 QLSYTEIRAFISKRRTQK-------------IGDRSLKRSLSGIKSFLKYLKKRKI---- 107 Q+S +++ AFI +R + + ++KR L+ I YL +R + Sbjct: 59 QVSTSDVLAFIQAQRLPRKENVVRLSDGESGLATSTIKRRLASISGLFSYLHERGLVEKN 118 Query: 108 ------TTESNILNMRN---LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158 +T S ++R ++ LPR L+ + V+ +L E R+ A Sbjct: 119 PVPRGLSTRSGRSHVRGTPLIRAPRRLPRVLSPDE----VNALLAALRCE------RDRA 168 Query: 159 ILYLLYGCGLRISEALSL-TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 ++ L+ GLR E L L P ++ GKG RIVP+ P+ +++ Y D Sbjct: 169 MVLLMLFGGLRRCEVLGLRMPDVRPGERRVFVAAGKGGHQRIVPVAPTFFESLGRYLDAE 228 Query: 218 -PFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275 P D + + + L R RG PL+ + R GLP T H LRH+ T L Sbjct: 229 RPIDSATDHVFVVLKRPRRGNPLSAAGLDEILSGARVRGGLP-HATCHELRHTCFTRLRE 287 Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 +G L +IQ+ GH + +T+IY ++ + DW++ Y + Sbjct: 288 SGMALEAIQAQAGHASIESTRIYLHLAN----DWLIGEYSKA 325 >gi|118511775|emb|CAD20932.2| IntI1 integrase [Salmonella enterica subsp. enterica serovar Infantis] Length = 337 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 82/327 (25%), Positives = 135/327 (41%), Gaps = 59/327 (18%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 33 TEQAYVNWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 83 LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207 + LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191 Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +A + F + + P +R Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT I Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311 Query: 298 YTNVNSKNGGDWMMEIYDQTHPSITQK 324 YT+V K GG + D P +++ Sbjct: 312 YTHV-LKVGGAGVSSPLDALPPLTSER 337 >gi|227461211|gb|ACP39550.1| putative integron integrase [uncultured microorganism] Length = 300 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 65/219 (29%), Positives = 105/219 (47%), Gaps = 48/219 (21%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 K S LP L +++ L+ +V N I+ +LYG G+RI E L L + Sbjct: 93 KVSKRLPSVLTQQETAALLAHV-----------SGTNGLIIRMLYGTGMRIKECLRLRIK 141 Query: 180 NIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYD--LCPFDLNL-----NIQLP--- 228 +I + + I +GKG+K R L S+ ++++ D L +L+L +++LP Sbjct: 142 DIDLARRIIVIREGKGNKDRTTMLPGSLADDLIQHIDERLRWHNLDLSTGHADVELPDAI 201 Query: 229 -----------LFRGIRGKPL---NP--GVFQRYI---RQLRRYLGLPLSTT-------A 262 ++ + P +P G +R+ R ++R + + Sbjct: 202 ARKYPRAASEWAWQYVFAAPTYSTDPRTGSVRRHHWCERNIQRAVKVAAQQARIHKLVHP 261 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 HTLRHSFATHLL G D+R++Q +LGH +STT IYT+V Sbjct: 262 HTLRHSFATHLLETGSDIRTVQELLGHSDVSTTMIYTHV 300 >gi|330880190|gb|EGH14339.1| Phage integrase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 271 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 69/264 (26%), Positives = 119/264 (45%), Gaps = 23/264 (8%) Query: 46 FLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR 105 F F+ + ++ R ++ + + A+ + + + +++R L+ + S +L Sbjct: 3 FCSFIGLASADEF-----RVVTRSHVLAWRAHLEHRGLAGATIRRKLAALASLFDHL--- 54 Query: 106 KITTESNILNMRNLKKSNSLPR-ALNEKQALTLVDN---VLLHTSHETKWIDARNSAILY 161 E+N + N PR NE + L D+ LL ET R+ A+L Sbjct: 55 ---LENNAIAGGNPVHGVKRPRIESNEGKTPALGDHQAKALLEAPDETTLKGQRDRALLA 111 Query: 162 LLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219 +L GLR EA L +I + + L++ GKG K+R +PL P I +Y + Sbjct: 112 VLLYHGLRREEAALLQVSDIQERRGIQHLKVHGKGGKVRYLPLHPIAAGRIHQYLENSEH 171 Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL----RRYLGLPLSTTA-HTLRHSFATHLL 274 L ++PLF +RGK G+ I + + G+ + H LR + AT+ L Sbjct: 172 HL-AERKVPLFMPLRGKLTGAGITANGIYAVVTAYAKKAGIEVDGLGVHGLRATAATNAL 230 Query: 275 SNGGDLRSIQSILGHFRLSTTQIY 298 + D+ +Q+ LGH +STT+IY Sbjct: 231 EHEADIAKVQAWLGHANISTTKIY 254 >gi|317124018|ref|YP_004098130.1| integrase [Intrasporangium calvum DSM 43043] gi|315588106|gb|ADU47403.1| integrase family protein [Intrasporangium calvum DSM 43043] Length = 511 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 80/299 (26%), Positives = 130/299 (43%), Gaps = 39/299 (13%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLI-FLAFYTEEKITIQTIRQLSYTEIRAFISK 77 Q W ++L RG+S Q + + R+F FLA ++ + Q + + A Sbjct: 220 QEWTEHLRTRRGVS----QGWATEARRFAAGFLA-----ELPVDPDGQRLWDGVDAATVN 270 Query: 78 RRTQKIGD-------RSLKRSLSGI--KSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 R + G+ R L S+ G+ +FL R I+ +R LPRA Sbjct: 271 RYVTRHGEGYSLSSRRHLVSSMRGLLDWAFLTGRLDRAISAGV----LRPAPAVPGLPRA 326 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 L+ Q L+ + + R+ AI+ L+ LR E +L + TL Sbjct: 327 LSAAQV-----QALIAAADTSTPAGRRDRAIVVLISRLALRAGEVAALALDELNWHAGTL 381 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYY-DLCP---FDLNLNIQL-PLFRGIRGKPLNPGVF 243 + GKG ++ +P+ V +A+++Y D P D + +L P G+ K ++ GV Sbjct: 382 VVHGKGGRVLTLPIPTDVGQALVDYLRDGRPPGAVDRAVFTRLRPPLVGLSSKGIS-GV- 439 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 I L GL + AH LRH+ AT +L+ GG L +++LGH R TT +Y + Sbjct: 440 ---IAHLATEAGLG-TVHAHALRHTAATAVLAAGGSLIEARALLGHARTDTTMVYARTD 494 >gi|10955228|ref|NP_044257.1| hypothetical protein R751p48 [Enterobacter aerogenes] gi|32470064|ref|NP_863006.1| hypothetical protein p165897_094 [Escherichia coli] gi|53793938|ref|YP_112391.1| DNA integrase [uncultured bacterium] gi|60115543|ref|YP_209334.1| hypothetical protein SC029 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|134047152|ref|YP_001102016.1| integrase IntI1 for transposon Tn21 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|152973776|ref|YP_001338815.1| integrase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|157412100|ref|YP_001481441.1| IntI1 integrase [Escherichia coli APEC O1] gi|161867947|ref|YP_001598128.1| hypothetical protein pOU7519_85 [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|168239505|ref|ZP_02664563.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|169797532|ref|YP_001715325.1| integrase/recombinase (E2 protein) [Acinetobacter baumannii AYE] gi|184156542|ref|YP_001844881.1| integrase [Acinetobacter baumannii ACICU] gi|237640301|ref|YP_002891156.1| IntI1 [Escherichia coli] gi|237810044|ref|YP_002894484.1| IntI1 [Escherichia coli] gi|302141607|ref|YP_003813066.1| integrase type 1 [Klebsiella pneumoniae] gi|313116705|ref|YP_004032855.1| integrase [Edwardsiella tarda] gi|13344938|gb|AAK19119.1|AF263520_1 integrase INTI1 [Pseudomonas aeruginosa] gi|149117|gb|AAA92744.1| IntI1 integrase [Escherichia coli] gi|288634|emb|CAA51182.1| integrase [Klebsiella aerogenes] gi|1572565|gb|AAC64460.1| Int [Enterobacter aerogenes] gi|13508544|emb|CAC35169.1| DNA integrase IntI1 [Achromobacter denitrificans] gi|15375396|gb|AAK95981.1| IntI1 integrase [Escherichia coli] gi|17046108|dbj|BAB72152.1| DNA integrase [Escherichia coli] gi|17157973|gb|AAL36429.1| IntI1 integrase [Pseudomonas aeruginosa] gi|24527229|gb|AAM89398.1| IntI1 integrase [Klebsiella pneumoniae] gi|28629321|gb|AAO49601.1| IntI1 [Escherichia coli] gi|30524990|emb|CAD56838.1| Integrase INTI1 [Pseudomonas aeruginosa] gi|33358378|gb|AAQ16665.1| IntI1 [Escherichia coli] gi|45758101|gb|AAS76313.1| Int [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|53136974|emb|CAG30882.1| DNA integrase [uncultured bacterium] gi|56786620|gb|AAA92752.2| IntI1 integrase [Escherichia coli] gi|70905581|gb|AAZ14844.1| IntI1 [Acinetobacter baumannii] gi|72536052|gb|AAZ73121.1| IntI1 [Klebsiella pneumoniae] gi|78057541|gb|ABB17271.1| site-specific recombinase [Vibrio cholerae] gi|78709991|gb|ABB48427.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar Kentucky] gi|84180556|gb|ABC54721.1| IntI1 [Vibrio cholerae] gi|86212237|tpd|FAA00063.1| TPA: IntI1 integrase [Escherichia coli] gi|90265400|emb|CAJ77082.1| Integrase [Acinetobacter baumannii] gi|99867125|gb|ABF67770.1| IntI1 integrase [Escherichia coli APEC O1] gi|108945866|gb|ABG23475.1| integrase [Morganella morganii] gi|110346525|emb|CAJ58443.1| class 1 DNA integrase [Pseudomonas aeruginosa] gi|126635814|gb|ABO21789.1| IntI1 [Pseudomonas aeruginosa] gi|133905071|gb|ABO41086.1| integrase IntI1 for transposon Tn21 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|134034958|gb|ABO46012.1| integrase [Enterobacter cloacae] gi|148455749|gb|ABQ65123.1| IntI1 [Pseudomonas aeruginosa] gi|149850111|emb|CAG29002.1| IntI1 [Klebsiella pneumoniae] gi|150958558|gb|ABR80585.1| integrase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|161087326|gb|ABX56796.1| IntI1 [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|169150459|emb|CAM88359.1| Integrase/recombinase (E2 protein) [Acinetobacter baumannii AYE] gi|183208136|gb|ACC55534.1| integrase [Acinetobacter baumannii ACICU] gi|191174836|emb|CAQ43032.1| DNA integrase [Pseudomonas aeruginosa] gi|197287812|gb|EDY27202.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|207999196|emb|CAQ52799.1| class 1 integrase [Pseudomonas aeruginosa] gi|222353664|emb|CAU08341.1| integrase [Pseudomonas aeruginosa] gi|223868914|gb|ACN22478.1| integrase 1 [Klebsiella oxytoca] gi|224983001|gb|ACN73419.1| IntI1 [Acinetobacter sp. NFM2] gi|225121196|gb|ACN81019.1| IntI1 integrase [Acinetobacter baumannii] gi|226876274|gb|ACO89459.1| IntI1 integrase [Cloning vector pPSX] gi|229561520|gb|ACQ77723.1| IntI1 [Escherichia coli] gi|229561900|gb|ACQ78101.1| IntI1 [Escherichia coli] gi|254595917|gb|ACT75274.1| integrase [Acinetobacter baumannii] gi|283148037|gb|ADB13428.1| class 1 integrase [Escherichia coli] gi|283484045|gb|ADB23335.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|289065298|gb|ADC80800.1| IntI1 [Escherichia coli] gi|289065323|gb|ADC80824.1| IntI1 [Escherichia coli] gi|294884937|gb|ADF47470.1| integrase [Pseudomonas aeruginosa] gi|296033872|gb|ADG84835.1| integrase type 1 [Klebsiella pneumoniae] gi|299757085|emb|CAB92435.2| class 1 integrase [Acinetobacter baumannii] gi|307639753|gb|ADN80878.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|311629588|gb|ACI29751.2| IntI1 [Pseudomonas aeruginosa] gi|312192342|gb|ADQ43828.1| integrase [Edwardsiella tarda] gi|316994927|gb|ADU79012.1| IntI1 [Aeromonas veronii] gi|317109966|gb|ADU90903.1| IntI1, DNA integrase [uncultured bacterium] gi|324007543|gb|EGB76762.1| integron integrase [Escherichia coli MS 57-2] Length = 337 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 82/327 (25%), Positives = 135/327 (41%), Gaps = 59/327 (18%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 33 TEQAYVNWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 83 LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207 + LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191 Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +A + F + + P +R Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT I Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311 Query: 298 YTNVNSKNGGDWMMEIYDQTHPSITQK 324 YT+V K GG + D P +++ Sbjct: 312 YTHV-LKVGGAGVRSPLDALPPLTSER 337 >gi|15808708|gb|AAL08437.1|AF326777_12 Tn21 integrase IntI1 [Shigella flexneri 2a] Length = 337 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 84/183 (45%), Gaps = 37/183 (20%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207 LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198 Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 +A + F + + P +R + FQ Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 R ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKV 318 Query: 305 NGG 307 G Sbjct: 319 GGA 321 >gi|62550837|emb|CAH64760.1| site-specific recombinase [uncultured bacterium] gi|194337964|emb|CAQ51376.1| InH class 1 integrase [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 337 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 84/183 (45%), Gaps = 37/183 (20%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207 LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198 Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 +A + F + + P +R + FQ Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 R ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKV 318 Query: 305 NGG 307 G Sbjct: 319 GGA 321 >gi|116619764|ref|YP_821920.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116222926|gb|ABJ81635.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 412 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 79/283 (27%), Positives = 122/283 (43%), Gaps = 28/283 (9%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKI--TIQTIRQLSYTEIRAFISKRRTQKIGDRS 87 GLS TL +Y QFL E+ + + L T + F+ R +++ Sbjct: 132 GLSPSTLLNYVPVAEQFL-------AERFHNAVPNVAMLRATHVTGFV-LRHARQLSPVR 183 Query: 88 LKRSLSGIKSFLKYLKKRKITT---ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 ++ ++SF +YL+ R + + + + N S +LPR L T +L Sbjct: 184 AGLMVTALRSFFRYLRHRGVIATDLAACVPTVPNWSLS-TLPRFLP-----TAAVESILE 237 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 T + RN IL LL G+R E + L+ +I + I+GKG K +PL+ Sbjct: 238 CCDRTTSVGRRNHTILLLLARLGVRAGEVVGLSLDDIDWSTGQITIRGKGGKSAQLPLVN 297 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL----NPGVFQRYIRQLRRYLGLPLS- 259 V A+ +Y D + +F R PL N +R+ ++ G+ + Sbjct: 298 DVGSALADYLR---HDRPRSATRRVFLRNRA-PLVGFGNSSTISSLVRRALKHAGVESAH 353 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 T AH LRHS AT LL GG L I +L H +TT IY V+ Sbjct: 354 TGAHVLRHSLATSLLRQGGSLDEIGELLRHQSPNTTAIYAKVD 396 >gi|288553931|ref|YP_003425866.1| site-specific integrase [Bacillus pseudofirmus OF4] gi|288545091|gb|ADC48974.1| site-specific integrase [Bacillus pseudofirmus OF4] Length = 348 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 71/302 (23%), Positives = 132/302 (43%), Gaps = 37/302 (12%) Query: 26 EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS---KRR--- 79 ++ G ++ TL+SY R + +F + T + + IR + +R F++ + R Sbjct: 36 KVAEGRAEGTLKSYR---RVYGVFSEYLTNNDVQLD-IRAIETDTVRGFVAWLLRERIRW 91 Query: 80 -----------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 T+ + RS+ + +K+F +L + ++ + + K + + Sbjct: 92 DGHKHKPEYVQTKGLSPRSVNDHIKTLKTFFSFL------VDEDLADFNPVSKVKKVRQI 145 Query: 129 LNEKQALTLVD-NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 E LT+ + L+ + K+ D R+ I+ L RI+E +L ++I +T Sbjct: 146 EKEIDVLTVDELKALMSVPYHRKYADFRDYVIMTFLLDTMCRINEVCTLRKRDIDFKDNT 205 Query: 188 LRIQG---KGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 + I+ K K R VP + + E ++ FD +F G+ L P F Sbjct: 206 VHIRAEITKTRKGRHVPFQKRTARLLKELIKEVDVFDSEY-----IFLSNYGEQLEPNHF 260 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + ++ + G+ + H RH+ AT L GGD+R +Q ILGH L T YT+V+ Sbjct: 261 RSRLKGFAKKAGIERNVHPHLFRHTGATMFLEAGGDIRHLQLILGHADLRMTTRYTHVSG 320 Query: 304 KN 305 K+ Sbjct: 321 KS 322 >gi|241992512|gb|ACS73592.1| IntI1 [uncultured bacterium] gi|241992515|gb|ACS73594.1| IntI1 [uncultured bacterium] gi|241992526|gb|ACS73602.1| IntI1 [uncultured bacterium] gi|241992530|gb|ACS73605.1| IntI1 [uncultured bacterium] gi|241992537|gb|ACS73610.1| IntI1 [uncultured bacterium] gi|241992541|gb|ACS73613.1| IntI1 [uncultured bacterium] gi|241992546|gb|ACS73616.1| IntI1 [uncultured bacterium] gi|241992555|gb|ACS73622.1| IntI1 [uncultured bacterium] gi|241992568|gb|ACS73632.1| IntI1 [uncultured bacterium] gi|241992575|gb|ACS73637.1| IntI1 [uncultured bacterium] gi|241992618|gb|ACS73667.1| IntI1 [uncultured bacterium] gi|241992621|gb|ACS73669.1| IntI1 [uncultured bacterium] gi|241992633|gb|ACS73677.1| IntI1 [uncultured bacterium] gi|241992638|gb|ACS73681.1| IntI1 [uncultured bacterium] gi|241992641|gb|ACS73683.1| IntI1 [uncultured bacterium] gi|241992644|gb|ACS73685.1| IntI1 [uncultured bacterium] Length = 315 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 77/304 (25%), Positives = 126/304 (41%), Gaps = 58/304 (19%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 33 TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 83 LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207 + LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191 Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +A + F + + P +R Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT I Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311 Query: 298 YTNV 301 YT+V Sbjct: 312 YTHV 315 >gi|229508884|ref|ZP_04398375.1| integrase [Vibrio cholerae B33] gi|229354159|gb|EEO19091.1| integrase [Vibrio cholerae B33] Length = 282 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/200 (31%), Positives = 92/200 (46%), Gaps = 38/200 (19%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207 LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 84 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 143 Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 +A + F + + P +R + FQ Sbjct: 144 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 203 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 R ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V K Sbjct: 204 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV-LK 262 Query: 305 NGGDWMMEIYDQTHPSITQK 324 GG + D P +++ Sbjct: 263 VGGAGVRSPLDALPPLTSER 282 >gi|170293912|gb|ACB13045.1| IntI1 [Thauera sp. B4] Length = 337 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 84/183 (45%), Gaps = 37/183 (20%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207 LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198 Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 +A + F + + P +R + FQ Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 R ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKV 318 Query: 305 NGG 307 G Sbjct: 319 GGA 321 >gi|61398373|gb|AAX46051.1| integrase [Pseudomonas aeruginosa] Length = 337 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 82/327 (25%), Positives = 135/327 (41%), Gaps = 59/327 (18%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 33 TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSCLANERKVSVSTHRQ--A 82 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 83 LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207 + LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191 Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +A + F + + P +R Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT I Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311 Query: 298 YTNVNSKNGGDWMMEIYDQTHPSITQK 324 YT+V K GG + D P +++ Sbjct: 312 YTHV-LKVGGAGVRSPLDALPPLTSER 337 >gi|241992572|gb|ACS73635.1| IntI1 [uncultured bacterium] Length = 315 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/177 (32%), Positives = 83/177 (46%), Gaps = 37/177 (20%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207 LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198 Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 +A + F + + P +R + FQ Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 R ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|17386060|gb|AAL38574.1|AF445082_1 class I integrase [Acinetobacter baumannii] gi|47155069|emb|CAG26808.1| DNA integrase [Acinetobacter baumannii] gi|110350561|emb|CAK55555.1| integrase [Pseudomonas putida] gi|110350568|emb|CAK55561.1| integrase [Acinetobacter baumannii] gi|195977009|gb|ACG63564.1| DNA integrase [Citrobacter youngae] Length = 337 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 78/310 (25%), Positives = 127/310 (40%), Gaps = 58/310 (18%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 33 TEQAYVNWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 83 LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207 + LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191 Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +A + F + + P +R Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT I Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311 Query: 298 YTNVNSKNGG 307 YT+V G Sbjct: 312 YTHVLKVGGA 321 >gi|310766564|gb|ADP11514.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 344 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 64/253 (25%), Positives = 117/253 (46%), Gaps = 24/253 (9%) Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL----NEK 132 K + + R+ + +L ++ + ++L K+ + + ++ + LPR + + Sbjct: 94 KANGEPLSPRTQRTALQPLQVWFRWLAKQNLILANPAADLELPRLEKHLPRTILSVEQVE 153 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-Q 191 + + L D L R+ A+L LL+ G+R E L + + L I Q Sbjct: 154 ETVNLCDLTTLQ--------GMRDRALLELLWSTGIRRGEVARLETWSADFSRKILTIVQ 205 Query: 192 GKGDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLF---RGIRGKPLNPGVFQRYI 247 GKG + R++P+ + Y +++ P + + LF G+ G N G+ + Sbjct: 206 GKGKQDRVIPVGERALWWLRHYLHEVRPEIVAVAGCKALFVAMDGVAGLTAN-GITHAVV 264 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 LR G+ + H RH+ AT +L NG DLR IQ++LGH + +TQIYT V+ + Sbjct: 265 PYLR-AAGIE-KGSCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIRA-- 320 Query: 308 DWMMEIYDQTHPS 320 + ++ THP+ Sbjct: 321 --LQAVHASTHPA 331 >gi|126698818|ref|YP_001087715.1| putative tyrosine recombinase [Clostridium difficile 630] gi|254974757|ref|ZP_05271229.1| putative tyrosine recombinase [Clostridium difficile QCD-66c26] gi|255092146|ref|ZP_05321624.1| putative tyrosine recombinase [Clostridium difficile CIP 107932] gi|255306126|ref|ZP_05350298.1| putative tyrosine recombinase [Clostridium difficile ATCC 43255] gi|255313883|ref|ZP_05355466.1| putative tyrosine recombinase [Clostridium difficile QCD-76w55] gi|255516564|ref|ZP_05384240.1| putative tyrosine recombinase [Clostridium difficile QCD-97b34] gi|255649664|ref|ZP_05396566.1| putative tyrosine recombinase [Clostridium difficile QCD-37x79] gi|260682828|ref|YP_003214113.1| putative tyrosine recombinase [Clostridium difficile CD196] gi|260686426|ref|YP_003217559.1| putative tyrosine recombinase [Clostridium difficile R20291] gi|115250255|emb|CAJ68076.1| putative phage integrase site-specific recombinase XerD-like [Clostridium difficile] gi|260208991|emb|CBA62057.1| putative tyrosine recombinase [Clostridium difficile CD196] gi|260212442|emb|CBE03323.1| putative tyrosine recombinase [Clostridium difficile R20291] Length = 304 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 69/289 (23%), Positives = 132/289 (45%), Gaps = 15/289 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE--IRAFIS 76 + ++ ++ ++ LS+ T+ SY D ++++ E I ++I+ + E I +++ Sbjct: 5 EGYIDYIKDKKKLSENTVASYFMDIKKYM--------EYINQKSIKLVDIVENDIISYLI 56 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 K + ++ R +S IKSF YL I T + +++ K L E++ Sbjct: 57 KLEKDNVSIATIARMISSIKSFHDYLFLNHICTNNPAKDIKKPKIKKENINILTEEEIER 116 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L++ L T K I R+ AI +LYG G+++SE + + ++I D + Sbjct: 117 LLNFPKLTTP---KLI--RDKAIFEVLYGTGIKVSELVEMNIEDIDLDIDYIYCNSCCKN 171 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 R++PL + + +Y + + + LF G+ + I++ + Sbjct: 172 QRVIPLCDITKLYLEKYLKEARPKMAVEGEKSLFVSSLGQRFTRQGLWKVIKKYSNLANI 231 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + LRHSFA HLL+ G ++ + ILG+ LS+ Q+Y N KN Sbjct: 232 DKNINPTMLRHSFAIHLLNEGANIAVVSKILGNVNLSSLQVYLNHIDKN 280 >gi|94985220|ref|YP_604584.1| phage integrase [Deinococcus geothermalis DSM 11300] gi|94555501|gb|ABF45415.1| phage integrase [Deinococcus geothermalis DSM 11300] Length = 369 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 81/288 (28%), Positives = 134/288 (46%), Gaps = 30/288 (10%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 S LTL++Y RQFL AF + + + QLS + ++ + + ++KR Sbjct: 56 SALTLKAYAESVRQFL---AFTGPPESPSRALNQLSAEDFEVWLLHLQEAGLKPNTIKRH 112 Query: 92 LSGIKSFLKYL---KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 L G+++ +K L K + + + +++ RAL + Q L+ L H Sbjct: 113 LYGVRNLMKALVWANVLKADPSAGVSPPTDPTPAHAKKRALTQAQMRALL--ALPGELHP 170 Query: 149 TKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207 + A R++ +L L GLR +E + L ++ TL ++GKG K R+VPL P+ Sbjct: 171 EDSVQASRDALLLALGGTLGLRAAEIVGLDLADVDLATGTLTVRGKGGKTRVVPL-PAGV 229 Query: 208 KAILEYYDLCPFDLNLNIQLP--------LFRGIRGKPLNPG---VFQRYIRQLRRYLGL 256 KA+L+ + P +N ++P L RG G+ G + Y RQL GL Sbjct: 230 KALLQRW--LPARQTVNPKVPALLVSLSSLNRG--GRLSTDGARFIAHAYYRQL----GL 281 Query: 257 PLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 P HTLR + THL DL + +LGH ++T+ IY +++ Sbjct: 282 PPEMWGLHTLRRTAGTHLYRATRDLHVVADLLGHASVTTSAIYAKMDA 329 >gi|89147553|gb|ABD62636.1| integrase [uncultured bacterium] gi|89147624|gb|ABD62671.1| integrase [uncultured bacterium] Length = 163 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 36/74 (48%), Positives = 47/74 (63%) Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 P+ R +R L+ V Q+ IR R GL HTLRHSFATHLL +G D+R++Q +L Sbjct: 89 PVTRQVRRHHLHDSVIQKAIRDASRLSGLNKLIGPHTLRHSFATHLLESGSDIRTVQELL 148 Query: 288 GHFRLSTTQIYTNV 301 GH + TT IYT+V Sbjct: 149 GHKHVQTTMIYTHV 162 >gi|297588425|ref|ZP_06947068.1| tyrosine recombinase XerC [Finegoldia magna ATCC 53516] gi|297573798|gb|EFH92519.1| tyrosine recombinase XerC [Finegoldia magna ATCC 53516] Length = 326 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 69/214 (32%), Positives = 105/214 (49%), Gaps = 16/214 (7%) Query: 95 IKSFLKYL---KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 I++F KYL +K I + +L+ + KK+ P L ++L L+ +L E K Sbjct: 101 IRTFYKYLINIRKLDIINPAELLD--SPKKNIRQPVYLTLDESLNLLKVILREKDEEIK- 157 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211 AR+ I L CG+R+SE S+ +I +TLR+ GKG+K R V L A+ Sbjct: 158 --ARDYCITVLFLNCGMRLSELSSINIDHIK--TNTLRVIGKGNKERTVYLNDMCLDALD 213 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFA 270 Y + P N LF + ++ Q I + G S + H LRH+ A Sbjct: 214 NYLKIRPEIDND----ALFISKKRNRMSNRAIQYRIEHYLKAGGFDTSIYSVHKLRHTAA 269 Query: 271 THLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNS 303 T + G D++ +Q ILGH +STTQIYT+V++ Sbjct: 270 TLMYQYGNVDIKVLQEILGHESVSTTQIYTHVDN 303 >gi|198240906|gb|ABG36697.2| integrase [Salmonella enterica subsp. enterica serovar Newport] Length = 337 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 84/183 (45%), Gaps = 37/183 (20%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207 LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198 Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 +A + F + + P +R + FQ Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 R ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKV 318 Query: 305 NGG 307 G Sbjct: 319 GGA 321 >gi|296273270|ref|YP_003655901.1| integrase family protein [Arcobacter nitrofigilis DSM 7299] gi|296097444|gb|ADG93394.1| integrase family protein [Arcobacter nitrofigilis DSM 7299] Length = 351 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 66/261 (25%), Positives = 118/261 (45%), Gaps = 24/261 (9%) Query: 57 KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI--- 113 K ++R++ + F++ + T + D S K + SF Y+ K+ N Sbjct: 89 KFGASSMREIDEEILSDFLASQ-TANLSDASKKNHRIALISFFGYIDKQNEEENGNAYRY 147 Query: 114 -LNMRNL-----KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167 + ++N K LP +N+++ + + + I RN I+ ++ G Sbjct: 148 GIELKNWGGLSGKSGTKLPSYMNKEEVNKFI-KAIDEYPFKNPIIGTRNRLIIKIILYTG 206 Query: 168 LRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSVRKAILEYY---DLCPFDLN 222 +R+ EA+S+ ++I D ++++GKG+K RIV + + K L + + C +L Sbjct: 207 IRVGEAISIKIKDINKDGDAYIIQVRGKGNKPRIVMIKEHIIKDDLSTWLENNCCEENL- 265 Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-HTLRHSFATHLLSNGGDLR 281 LF + K L R + Q+ G+ H LRHSFAT L N DL Sbjct: 266 ------LFCNQKNKKLTQAYIGRLVEQILISCGIRKEKNGPHMLRHSFATLLYQNSHDLI 319 Query: 282 SIQSILGHFRLSTTQIYTNVN 302 +Q LGH ++T++IYT+ + Sbjct: 320 LVQESLGHADINTSRIYTHFD 340 >gi|42525368|gb|AAS18383.1| Int1 DNA integrase [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 372 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 78/310 (25%), Positives = 127/310 (40%), Gaps = 58/310 (18%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 33 TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 83 LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207 + LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191 Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +A + F + + P +R Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT I Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311 Query: 298 YTNVNSKNGG 307 YT+V G Sbjct: 312 YTHVLKVGGA 321 >gi|241992610|gb|ACS73661.1| IntI1 [uncultured bacterium] Length = 315 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/177 (32%), Positives = 83/177 (46%), Gaps = 37/177 (20%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207 LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198 Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 +A + F + + P +R + FQ Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 R ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|196251170|ref|ZP_03149847.1| integrase family protein [Geobacillus sp. G11MC16] gi|196209334|gb|EDY04116.1| integrase family protein [Geobacillus sp. G11MC16] Length = 310 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 66/286 (23%), Positives = 133/286 (46%), Gaps = 17/286 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 ++++ E+ R L + T++ Y + F+ L E++I ++ T R I + Sbjct: 21 FIEDCEL-RNLREHTIKYYRSELNAFIKLLK---EQEIELRVSEWTGETIKRNIIMYMKE 76 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + S+ L +++F +L+ R + + + +++ LK + + +Q L Sbjct: 77 KGLKTVSINSRLRALRAFFNFLEGRNLIKSNPMKDIKLLKDRKRIVETFDNQQIKALFKA 136 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRI 199 L T ++ R+ I+ LL G+R++E + + +I+ +Q +RI+ KG R Sbjct: 137 CDLRT-----FVGLRDYTIMMLLLETGVRVNELVGIKTTDIIWEQKVIRIRNTKGGFERF 191 Query: 200 VPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP- 257 VP+ + + +Y + D + LF PL+ Q I++ + G+ Sbjct: 192 VPIQDKMINQLKKYIAVRGSVDTDY-----LFITRDDTPLSKKQVQDRIKEYGKKAGIKN 246 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + + HT RH+FA + NG + +Q+ILGH L T++Y N+ S Sbjct: 247 VRCSPHTFRHTFAKLCVLNGANAFQLQAILGHTSLEMTKVYVNLFS 292 >gi|225629572|ref|ZP_03787600.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591574|gb|EEH12586.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 280 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 86/287 (29%), Positives = 133/287 (46%), Gaps = 27/287 (9%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-I 83 L ER ++ TL+SY D Q FL E T+ + + T I+ ++ TQK Sbjct: 3 LASERSATQNTLESYRSDLHQLEEFL---LESGTTLVGVNK---TNIKDYVKSLCTQKKY 56 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKIT----TESNILNMRNLKKSNSLPRALNEKQALTLVD 139 S+ R +S +K+F K L I +N ++N K S LP+ L+ ++ L+D Sbjct: 57 KSSSISRKISAMKNFYKCLFNDGIIDFNPAPANDAELKNPKVSRPLPKYLSVEEIFLLMD 116 Query: 140 NVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIM------DDQSTLRIQG 192 V S K I + R AIL +LY G+R+SE +S+ + + + + I+G Sbjct: 117 AVRKSASESNKEISSKRLCAILDILYSSGMRVSELISMKLCEVSHLINSNNKECYIIIKG 176 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 K + R + +++ Y + L N LF G KP P QR + QL Sbjct: 177 KSGRERQILFNEQALQSLRNYLSVRDNLLSNRKESDWLFPG--DKPNKPITRQR-VAQLM 233 Query: 252 RYLGLPLST-----TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 + L + + H +RHSFATHLL +G ++ IQ +LGH LS Sbjct: 234 KELARKCNIDENKISPHVIRHSFATHLLDSGANIVLIQKVLGHTNLS 280 >gi|241992627|gb|ACS73673.1| IntI1 [uncultured bacterium] Length = 315 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/177 (32%), Positives = 83/177 (46%), Gaps = 37/177 (20%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207 LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198 Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 +A + F + + P +R + FQ Sbjct: 199 WLKDQAEGRSGVALPDTLERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 R ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|212696176|ref|ZP_03304304.1| hypothetical protein ANHYDRO_00712 [Anaerococcus hydrogenalis DSM 7454] gi|212676805|gb|EEB36412.1| hypothetical protein ANHYDRO_00712 [Anaerococcus hydrogenalis DSM 7454] Length = 330 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 82/315 (26%), Positives = 148/315 (46%), Gaps = 37/315 (11%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFL----AFYTE----------EKITIQTIR 64 ++L L+ R LS+ T+ Y D F+ + +Y + E I I I Sbjct: 10 DDYLSYLKSIRALSEKTISEYRYDLINFIYYQILRKVYYNDKQNLNKDIEDENININKIF 69 Query: 65 QLSYT------EIRAFISKRRTQKIGDRSLKRS--LSGIKSFLKYLKKRKITTESNILN- 115 S+ ++ ++IS + + D + RS +S ++SF KYL + ++NI Sbjct: 70 NKSFISDINIQDMYSYISYLDNE-LNDNASTRSRKISALRSFYKYLHQEIEMIDNNITEK 128 Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175 +RN K P L + L++ + + +++ R+ AI++ G+R+SE +S Sbjct: 129 LRNPKIQKRQPVYLTLSETELLLETI---NEEKNEFLRNRDMAIVFTFLTTGMRLSELVS 185 Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF---DLNLNIQLPLFRG 232 + +I DD T I GKG+K R + L + I Y + D+ +N LF Sbjct: 186 VDLNDIKDDHFT--IIGKGNKERTIYLTKNCIDLIDNYIMIRKNYLKDIKIN---ALFIS 240 Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGG-DLRSIQSILGHF 290 R K ++ Q + + + G + H LRH+ AT + G D+R+++ +LGH Sbjct: 241 TRKKRISNRAVQSTVDKYLKKAGFDTRVYSTHKLRHTAATLMYKYGNVDIRALKDVLGHE 300 Query: 291 RLSTTQIYTNVNSKN 305 +STTQIYT++++++ Sbjct: 301 SVSTTQIYTHLDNED 315 >gi|221218583|ref|YP_002527541.1| class 1 integron integrase protein IntI1 [Escherichia coli] gi|261888715|ref|YP_003264403.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|215252911|gb|ACJ63570.1| class 1 integron integrase protein IntI1 [Escherichia coli] gi|261857302|emb|CBA11369.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312949085|gb|ADR29911.1| class 1 integron integrase protein IntI1 [Escherichia coli O83:H1 str. NRG 857C] Length = 372 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 78/310 (25%), Positives = 127/310 (40%), Gaps = 58/310 (18%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 33 TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 83 LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207 + LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191 Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +A + F + + P +R Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT I Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311 Query: 298 YTNVNSKNGG 307 YT+V G Sbjct: 312 YTHVLKVGGA 321 >gi|330468102|ref|YP_004405845.1| integrase family protein [Verrucosispora maris AB-18-032] gi|328811073|gb|AEB45245.1| integrase family protein [Verrucosispora maris AB-18-032] Length = 333 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 10/227 (4%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL-NEKQALTLVDNVLLHT 145 S+ R+ S SF +L ++ + + + + P+ L E L+ + Sbjct: 82 SVGRAWSTWNSFFTFLVAEQVVPGNPMPAVGRPRMPLPQPKPLRGEDTPEQLLASAARGE 141 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--GKGDKIRIVPLL 203 + R+ A+L L GLR+SE L+L ++ R++ GKG + R++P+ Sbjct: 142 GRQRDPWPERDVAVLALALCAGLRLSELLALRVGSLSGRPGERRVEVAGKGGRPRVLPVE 201 Query: 204 PSVRKAILEYYD--LCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL---- 256 P + + + Y D + F + PL RG+PL G Q + R G+ Sbjct: 202 PGLDEVLSAYLDSRVRRFGTRTVRPDSPLLVDRRGEPLRRGGLQYLVESCYRRAGIGDRV 261 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 P H LRH+FAT L +G I +LGH L+++Q Y V + Sbjct: 262 PRGARLHALRHTFATRLAEDGAGAAEIMRLLGHASLASSQTYIEVTA 308 >gi|169824446|ref|YP_001692057.1| site-specific tyrosine recombinase XerC [Finegoldia magna ATCC 29328] gi|302380744|ref|ZP_07269209.1| site-specific tyrosine recombinase XerC [Finegoldia magna ACS-171-V-Col3] gi|167831251|dbj|BAG08167.1| integrase [Finegoldia magna ATCC 29328] gi|302311687|gb|EFK93703.1| site-specific tyrosine recombinase XerC [Finegoldia magna ACS-171-V-Col3] Length = 326 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 69/214 (32%), Positives = 105/214 (49%), Gaps = 16/214 (7%) Query: 95 IKSFLKYL---KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 I++F KYL +K I + +L+ + KK+ P L ++L L+ +L E K Sbjct: 101 IRTFYKYLINIRKLDIINPAELLD--SPKKNIRQPVYLTLDESLDLLKVILREKDEEIK- 157 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211 +R+ I L CG+R+SE S+ +I +TLR+ GKG+K R V L AI Sbjct: 158 --SRDYCITVLFLNCGMRLSELSSINIDHIK--TNTLRVIGKGNKERTVYLNDMCLDAID 213 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFA 270 Y + P N LF + ++ Q I + G S + H LRH+ A Sbjct: 214 NYLKIRPEIDND----ALFISKKRNRMSNRAIQYRIEHYLKIGGFDTSIYSVHKLRHTAA 269 Query: 271 THLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNS 303 T + G D++ +Q ILGH +STTQIYT+V++ Sbjct: 270 TLMYQYGNVDIKVLQEILGHESVSTTQIYTHVDN 303 >gi|193062841|ref|ZP_03043934.1| integrase [Escherichia coli E22] gi|192931484|gb|EDV84085.1| integrase [Escherichia coli E22] Length = 337 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 63/237 (26%), Positives = 98/237 (41%), Gaps = 33/237 (13%) Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSN 123 Q++ I + RR Q I S+ R L+ + F + E M+ LK+ Sbjct: 100 QITKALISQYSMTRRGQGIKPTSINRDLTCLSGMFTALIDAELFFGEHPFRGMKKLKEQK 159 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 L +++ L+ N +D N I L G R EA L +N++ Sbjct: 160 PETGYLTQEEITLLLAN-----------LDGDNKKIAILCLSTGARWGEAAKLKAENVIQ 208 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 ++ T ++ K +K R VP+ V I L P + P FR Sbjct: 209 NRVTF-VKTKTNKPRTVPISEEVAVMIAGKGYLFP-----DASYPKFR------------ 250 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 R ++ ++ LP H LRHSFATH + NGG + ++Q ILGH R+ T +Y + Sbjct: 251 -RTMKDVKP--DLPDGQATHALRHSFATHFMINGGSIITLQRILGHSRIEQTMVYAH 304 >gi|41057046|ref|NP_957649.1| putative site-specific recombinase/integrase [Bacillus methanolicus] gi|40074231|gb|AAR39395.1| putative site-specific recombinase/integrase [Bacillus methanolicus MGA3] Length = 284 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 77/155 (49%), Gaps = 17/155 (10%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQ--NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210 + RN A++ LL GLRISEAL+L Q N++ + T+R GKGDK R+V + V+ A+ Sbjct: 127 NKRNYALVTLLAYAGLRISEALNLKMQDFNLVSREITVR-SGKGDKFRVVFMNDKVKAAL 185 Query: 211 LEYYDL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + D LF R +PLN + ++ +G + T H L Sbjct: 186 QSWLKERKEKGIEHDF-------LFVSNRNQPLNRTTINKLFKEYSEPIGKDI--TPHDL 236 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 RH F +H +S G + + + GH + TT +YTN Sbjct: 237 RHFFCSHAISRGLSVHEVANQAGHSNIHTTLLYTN 271 >gi|32267344|ref|NP_861376.1| integrase/recombinase XerD [Helicobacter hepaticus ATCC 51449] gi|32263397|gb|AAP78442.1| integrase/recombinase XerD [Helicobacter hepaticus ATCC 51449] Length = 362 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 78/271 (28%), Positives = 125/271 (46%), Gaps = 34/271 (12%) Query: 51 AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE 110 AF T+ +I T+ + + F+S T + + S K + F Y+ K+ + Sbjct: 86 AFLTQS--SIDTMEDIDEEVLSDFLS-VETSALSNASKKNYRIALIGFFGYIDKQNESDG 142 Query: 111 SNILNMRNLKKSN-------SLPRALNEK---QALTLVDNVLLHTSHETKWIDARNSAIL 160 ++ + LK S+ LP LN+K Q L +D S + + ARN I+ Sbjct: 143 ASYVYDITLKISSLQGKSGQKLPSFLNQKELEQFLRAIDE-----SQLGEKVAARNKLII 197 Query: 161 YLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY---- 214 L+ G+R+SEAL+L ++I+ D + I+GKG+K R+V + S + +L + Sbjct: 198 KLIVYTGIRVSEALNLRCKDILPAKDCYLISIRGKGNKPRVVMIRQSHIQNLLNTWLTQR 257 Query: 215 -DLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFAT 271 P DL LF +GK L + + + G+ AH LRHSFAT Sbjct: 258 LGFSPMHDL-------LFCNAKGKALTQSYIYKNVENILTQAGIRKEKNGAHMLRHSFAT 310 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 L DL +Q LGH L+T++IYT+ + Sbjct: 311 LLYQQKHDLVMVQEALGHSDLNTSRIYTHFD 341 >gi|241992647|gb|ACS73687.1| IntI1 [uncultured bacterium] Length = 315 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 77/304 (25%), Positives = 126/304 (41%), Gaps = 58/304 (19%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 33 TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 83 LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207 + LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191 Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +A + F + + P +R Sbjct: 192 LPRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT I Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311 Query: 298 YTNV 301 YT+V Sbjct: 312 YTHV 315 >gi|241992598|gb|ACS73653.1| IntI [uncultured bacterium] Length = 316 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/69 (52%), Positives = 46/69 (66%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 IR L P QR IRQ + G+ T HTLRHSFATHLL +G D+R++Q +LGH + Sbjct: 248 IRRHHLYPQSLQRAIRQAVQAAGIVKPATTHTLRHSFATHLLMSGYDIRTVQELLGHADV 307 Query: 293 STTQIYTNV 301 +TT IYT+V Sbjct: 308 ATTMIYTHV 316 >gi|89147568|gb|ABD62643.1| integrase [uncultured bacterium] gi|89147616|gb|ABD62667.1| integrase [uncultured bacterium] Length = 163 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/74 (48%), Positives = 47/74 (63%) Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 P+ R +R L+ V Q+ IR R GL HTLRHSFATHLL +G D+R++Q +L Sbjct: 89 PVTRQVRRHHLHDSVIQKAIRDASRLSGLNKLIGPHTLRHSFATHLLESGSDIRTVQELL 148 Query: 288 GHFRLSTTQIYTNV 301 GH + TT IYT+V Sbjct: 149 GHKHVQTTMIYTHV 162 >gi|241992508|gb|ACS73589.1| IntI1 [uncultured bacterium] Length = 315 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 57/177 (32%), Positives = 83/177 (46%), Gaps = 37/177 (20%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207 LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198 Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 +A + F + + P +R + FQ Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 R ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|259503196|ref|ZP_05746098.1| tyrosine recombinase XerD [Lactobacillus antri DSM 16041] gi|259168853|gb|EEW53348.1| tyrosine recombinase XerD [Lactobacillus antri DSM 16041] Length = 295 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 72/303 (23%), Positives = 135/303 (44%), Gaps = 15/303 (4%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +L L+ G S TL SY D Q + AF+ + ++ T + ++ A +++++ Sbjct: 7 KYLAYLKSNHGRSANTLLSYRRDLDQAV---AFFRQRGVSDWTA--VDQYQLLALVAEQK 61 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + ++ R LS ++ F +YL + + + + N ++++ P + LT + Sbjct: 62 KRGRSPATINRQLSALRQFYRYLVRHQQLRFNPTELIDNQEQTDDTPPVI-----LTAAE 116 Query: 140 -NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 LL + + R+ A+L +L G+R+SE ++L ++ D LR+ + R Sbjct: 117 IKQLLAAPNPDHPLGKRDRAMLAVLATTGMRVSELVALLLTDLHLDIKMLRLGSGSRRER 176 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +VP+ + + Y L + +F G L + +R+L R G+ Sbjct: 177 LVPVSDQAVQELEHYLAAVRPQLAAMGEQAVFVNAHGHQLTRQGIWKKLRELVRRAGIEK 236 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + T TLR+SFA LL +G D R IQ +LG+ L + Y + + + Y Q Sbjct: 237 TVTPRTLRYSFAVQLLQSGADGRLIQEMLGYSELRAIKPYLKMTVQE----LSADYRQHQ 292 Query: 319 PSI 321 P I Sbjct: 293 PKI 295 >gi|258648849|ref|ZP_05736318.1| putative nicotinate-nucleotide pyrophosphorylase [Prevotella tannerae ATCC 51259] gi|260850863|gb|EEX70732.1| putative nicotinate-nucleotide pyrophosphorylase [Prevotella tannerae ATCC 51259] Length = 334 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 81/167 (48%), Gaps = 16/167 (9%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI-RIVPLLPSVRKAILEYY-- 214 AIL LLYG G+R+SEA SL Q+I ++ + I+ ++ R++P+ S+ + + +Y Sbjct: 143 AILRLLYGTGMRVSEATSLLNQDINLEKRVITIRKTKNQCQRLIPVCSSLYRVLSQYVEA 202 Query: 215 -DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT----AHTLRHSF 269 D P N++ P F G PL+ + R + R G+P H LRH+F Sbjct: 203 RDRLPLPHADNMESPFFISPSGLPLSQSRIYAWFRIILRKCGIPHCAKKGPRVHDLRHTF 262 Query: 270 ATHLL----SNGGDLRSIQSI----LGHFRLSTTQIYTNVNSKNGGD 308 A H L NG D+ I LGH +LS T+ Y + + D Sbjct: 263 AVHSLMHQVKNGADVYCTLPILAVFLGHKKLSDTETYVRLTQEMYSD 309 >gi|227461198|gb|ACP39544.1| putative integron integrase [uncultured microorganism] Length = 299 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 75/258 (29%), Positives = 119/258 (46%), Gaps = 50/258 (19%) Query: 93 SGIKSFLKYLK-KRKI--TTESNILNMRNLKKSNSLPRALNEKQALTLVDNV----LLHT 145 +GI F+ +L KR++ +T+S LN + + L + + L V + ++ T Sbjct: 43 AGIAPFVNWLATKRQVAASTQSQALNAVLFRYRDVLELDVGQLDGLRRVQRLSRLPVVLT 102 Query: 146 SHETK----WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV 200 E + ++ + + LLYG GLRI+E ++L ++I +T+ ++ GKG + R Sbjct: 103 IEEVRRLLGALEGTSKLLAELLYGTGLRITECMTLRTKDIDLSATTIHVRAGKGGEDRTA 162 Query: 201 PLLPS-----VRKAILEYYDL-----------CPFDLNLNIQLP----------LF--RG 232 LLPS +R +L L P L + P LF R Sbjct: 163 -LLPSRLRDRIRDQVLAVARLHKRDIAAGAGHAPLPGGLGRKYPNASRELKWQFLFPSRS 221 Query: 233 IRGKP---------LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283 IR P + Q+ + +G+ + TLRHSFATHLL+ G D+R+I Sbjct: 222 IRPCPGTGRLLRWHASESTLQKRFKMALLAVGIHKQASVRTLRHSFATHLLATGTDIRTI 281 Query: 284 QSILGHFRLSTTQIYTNV 301 Q +LGH L TT+IYT+V Sbjct: 282 QLLLGHRNLKTTRIYTHV 299 >gi|56475683|ref|YP_157272.1| phage-related integrase [Aromatoleum aromaticum EbN1] gi|58616519|ref|YP_195648.1| putative integrase [Azoarcus sp. EbN1] gi|58616531|ref|YP_195660.1| putative integrase [Azoarcus sp. EbN1] gi|56311726|emb|CAI06371.1| phage-related integrase [Aromatoleum aromaticum EbN1] gi|56315981|emb|CAI10624.1| putative integrase [Aromatoleum aromaticum EbN1] gi|56315993|emb|CAI10636.1| putative integrase [Aromatoleum aromaticum EbN1] Length = 332 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 89/304 (29%), Positives = 128/304 (42%), Gaps = 21/304 (6%) Query: 10 VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69 SF L ER + Q L +R S T+ SY RQFL F+ + + ++ ++ Sbjct: 5 ASFAALLER-FFTQRLMQQRQASPHTISSYRDTFRQFLKFVQQRLHKSPSRLSLEEIDAP 63 Query: 70 EIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 I AF+ + +++ RS L+ I SF +Y+ + I + + S R Sbjct: 64 LIVAFLDDLEKCRRVSIRSRNLRLTAIHSFFRYVAFEAPEHSAQIQRVLAIP-SKRFTRN 122 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQST 187 L A VD +L T W R+ A L + GLR+SE L + I+ + Sbjct: 123 LVSFLARAEVDALLAAPDQHT-WSGRRDHAFLLVAVQTGLRLSEMTGLKRDDLILGAGAH 181 Query: 188 LRIQGKGDKIRIVPLLPS---VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 +R+ GKG K R PL S V KA L D+ LF +G+ L+ Q Sbjct: 182 VRVVGKGRKERCTPLAKSTLTVLKAWLREPQRGEGDV-------LFPSAKGERLSVHGVQ 234 Query: 245 RYIRQLRRYL--GLPLST----TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + + R P T T H LRH+ A LL G D I LGH + TTQIY Sbjct: 235 YLLNKHRLAASEACPSLTQKRITVHRLRHTMAMDLLQAGVDRSVIALWLGHESVETTQIY 294 Query: 299 TNVN 302 + N Sbjct: 295 LDAN 298 >gi|56421448|ref|YP_148766.1| integrase/recombinase [Geobacillus kaustophilus HTA426] gi|56381290|dbj|BAD77198.1| integrase/recombinase [Geobacillus kaustophilus HTA426] Length = 337 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 66/286 (23%), Positives = 134/286 (46%), Gaps = 17/286 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 ++++ E+ R L + T++ Y + F+ L E++I ++ T R I + Sbjct: 48 FIEDCEL-RNLREHTIKYYRSELNAFVKLLK---EQEIELRVSEWTGETIKRNVIMYMKE 103 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + S+ L +++F +L+ R + + + +++ L+ + + +Q L Sbjct: 104 KGLKTVSINSRLRALRAFFNFLEGRNLIKSNPMKDIKLLRDRKRIVETFDNQQIKALFKA 163 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRI 199 L T ++ R+ I+ LL G+R++E +S+ +I+ +Q +RI+ KG R Sbjct: 164 CDLRT-----FVGLRDYTIMMLLLETGVRVNELVSIKTTDIIWEQKVIRIRNTKGGFERF 218 Query: 200 VPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP- 257 VP+ + + +Y + D + LF PL+ Q I++ + G+ Sbjct: 219 VPIQDKMINQLKKYIAVRGSVDTDY-----LFITRDDTPLSKKQVQDRIKEYGKKAGIKN 273 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + + HT RH+FA + NG + +Q+ILGH L T++Y N+ S Sbjct: 274 VRCSPHTFRHTFAKLCVLNGANAFQLQAILGHTSLEMTKVYVNLFS 319 >gi|89147446|gb|ABD62583.1| integrase [uncultured bacterium] Length = 163 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 34/69 (49%), Positives = 45/69 (65%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 +R ++P QR +R+ + G+ + HTLRHSFATHLL NG DLR IQ +LGH + Sbjct: 94 VRRHHVSPEALQRAVREAVKKAGMVKPVSVHTLRHSFATHLLLNGVDLRQIQELLGHANV 153 Query: 293 STTQIYTNV 301 TT IYT+V Sbjct: 154 ETTMIYTHV 162 >gi|89147444|gb|ABD62582.1| integrase [uncultured bacterium] Length = 163 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 34/69 (49%), Positives = 45/69 (65%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 +R ++P QR +R+ + G+ + HTLRHSFATHLL NG DLR IQ +LGH + Sbjct: 94 VRRHHVSPEALQRAVREAVKKAGMVKPVSVHTLRHSFATHLLLNGVDLRQIQELLGHANV 153 Query: 293 STTQIYTNV 301 TT IYT+V Sbjct: 154 ETTMIYTHV 162 >gi|54295982|ref|YP_122294.1| hypothetical protein plpp0140 [Legionella pneumophila str. Paris] gi|53755814|emb|CAH17317.1| hypothetical protein plpp0140 [Legionella pneumophila str. Paris] Length = 194 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 76/156 (48%), Gaps = 12/156 (7%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-------RIQGKGDKIRIVPLL-PSV 206 RNSA++Y +G GLR+ E SLT ++ D L R KG+K R L + Sbjct: 30 RNSALVYCSFGLGLRVKEIASLTIADVADYNYQLLEEICLKRSMTKGEKQRYAYLANEKI 89 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 RKA+ + D ++ PLF+ R P Q++ + L G+ + ++H+ R Sbjct: 90 RKALQAHLDTLK---HVARDKPLFQTQRKSRFTPNSLQKWFKSLYDKAGI-IGASSHSGR 145 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 +F T L+ G D++++ + GH + TT IY N Sbjct: 146 RTFITRLIEQGADIKAVSRLAGHANIVTTAIYVEDN 181 >gi|327538852|gb|EGF25495.1| tyrosine type site-specific recombinase [Rhodopirellula baltica WH47] Length = 301 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 85/175 (48%), Gaps = 22/175 (12%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 +KS LP +++K+ +++ R+ +L +LY GLR++E L Sbjct: 142 RKSKQLPVVMSKKEVQRMMEAAR----------TLRDKLLLTVLYATGLRVAEVARLQWS 191 Query: 180 NIMDDQSTLRIQ-GKGDKIRIV----PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234 + D+ +R+Q GKG K R V LLP +R+ L + P Sbjct: 192 DFDFDRQQIRVQLGKGKKDRYVMLADDLLPLMRQ-------LWRRTKGVGYLFPSEGRRV 244 Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289 + L+P QR ++Q R G+ + T H+ RHSFATHL+ +G D+R IQ +LGH Sbjct: 245 DRHLSPRTIQRAVKQARILSGIGKAVTPHSFRHSFATHLIESGTDIRFIQKLLGH 299 >gi|309791377|ref|ZP_07685887.1| integron integrase [Oscillochloris trichoides DG6] gi|308226584|gb|EFO80302.1| integron integrase [Oscillochloris trichoides DG6] Length = 321 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 55/184 (29%), Positives = 87/184 (47%), Gaps = 41/184 (22%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKG--DKIRIVP--LLPSVRKAILEYY 214 LLYG GLR+ E L L +++ D L++ GKG D++ ++P L+ +R +++ Sbjct: 131 LLYGSGLRLMECLRLRVKDL--DFQMLQVVVRDGKGMRDRLTMLPATLVEPLRAHLVQVK 188 Query: 215 DLCPFDL-----NLNIQLPLFR---------------------------GIRGKPLNPGV 242 + DL + + L R IR ++ G Sbjct: 189 QIFEQDLADGYGEVYLPFALVRKSPDAARSWAWQYLFPAEQRSRDPRSGAIRRHHVHEGS 248 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 QR + R G+ + HT RHSFATHL+ NG D+R++Q +LGH + TT IYT+V Sbjct: 249 LQRAVHDAVRASGITKHASCHTFRHSFATHLIENGYDIRTVQELLGHSDVKTTMIYTHVL 308 Query: 303 SKNG 306 ++ G Sbjct: 309 NRGG 312 >gi|320333098|ref|YP_004169809.1| integrase family protein [Deinococcus maricopensis DSM 21211] gi|319754387|gb|ADV66144.1| integrase family protein [Deinococcus maricopensis DSM 21211] Length = 297 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 78/286 (27%), Positives = 127/286 (44%), Gaps = 19/286 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + +L I+R SK TL Y+ R FL +E IT T +L+ T +RAF+ Sbjct: 8 EQFAYHLRIKR-RSKNTLNFYDVSRRTLHRFL---EQEGITPDT-DELTVTHLRAFLVWL 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q +G + +K+ + + ++ T RN LP E+Q V Sbjct: 63 GDQGLGPGGIHAQARALKAVFNWGFREELLT-------RNPAVRLELPSLPKERQPTVTV 115 Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 + + LL T+ R+SAI+ +L GLR+ E + L +++ ++ +R+ GKG+K Sbjct: 116 EVMRSLLKACKGTER-PLRDSAIVLMLLDTGLRVHELIGLKLEDLQFERGLIRVVGKGNK 174 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLG 255 R VP+ A Y L + +P +F G+ + + +L R G Sbjct: 175 ERFVPVGSKAMSATSAY--LRRERKQRHPGVPHVFLSRSGEVMTRSGISIRLAKLARSTG 232 Query: 256 LPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + A H R FA L NGGD+ ++Q I+GH L T+ Y Sbjct: 233 IEREACAPHAFRRGFAVEFLRNGGDVFTLQQIMGHSSLDMTRRYVT 278 >gi|45673|emb|CAA31355.1| unnamed protein product [Plasmid pLMO20] Length = 337 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 84/183 (45%), Gaps = 37/183 (20%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207 LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198 Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 +A + F + + P +R + FQ Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 R ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKV 318 Query: 305 NGG 307 G Sbjct: 319 GGA 321 >gi|116626672|ref|YP_828828.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116229834|gb|ABJ88543.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 371 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 81/294 (27%), Positives = 129/294 (43%), Gaps = 30/294 (10%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ-TIRQLSYTEIRAFISKRRTQKI 83 L +R +S T+ SY DT + L+ A K Q + L + + AF+ ++ Sbjct: 19 LMAQRKVSPHTIASYR-DTFRLLLQFAQKRLRKAPSQLGLDDLDASLVGAFLEDLENRRH 77 Query: 84 -GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD--- 139 G RS L+ I+SF +Y + S I+ ++ ++P N++Q LV Sbjct: 78 NGARSRNLRLTAIRSFFRY-ASLEAPAHSGII-----QRVLAIP---NQRQRRALVGFLT 128 Query: 140 ----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKG 194 LL + T+W+ R+ A L GLR+SE L +++ + + +R +GKG Sbjct: 129 RPEIEALLAAPNRTQWLGRRDHAFLLTAVQTGLRLSEMTGLRQEDVSLGAGAHVRCRGKG 188 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ----RYIRQL 250 K R PL A+L+ + + LF RG PL+ Q R++ Q Sbjct: 189 RKERCTPLAKPT-AAVLKAWIR---EQGRGDSKTLFPSTRGGPLSADGVQHLLARHVAQA 244 Query: 251 RRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 R++ + H LRH+ A LL G D I LGH + TTQIY + + Sbjct: 245 RKHCASLRKKRVSPHVLRHAAAMELLQGGVDRAVIALWLGHESVETTQIYLDAD 298 >gi|224437705|ref|ZP_03658652.1| integrase/recombinase XerD [Helicobacter cinaedi CCUG 18818] Length = 393 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 62/197 (31%), Positives = 96/197 (48%), Gaps = 24/197 (12%) Query: 120 KKSNSLPRALNEKQA---LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 K LP LN+ + L +D L + + ARN I+ L+ G+R+SEAL+L Sbjct: 159 KSGQKLPAYLNQDELERFLQAIDEAEL-----GEKVAARNKLIIKLIVYTGIRVSEALNL 213 Query: 177 TPQNIMD--DQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-----DLCPF-DLNLNIQLP 228 ++I D ++I+GKG+K R+ + S + +L+ + P DL Sbjct: 214 RRKDIYPHLDCYIIQIRGKGNKPRVAMIRQSHIQNLLDVWLTQRLSFAPLHDL------- 266 Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 LF +GK L + + ++ G+ AH LRHSFAT L DL +Q L Sbjct: 267 LFCNTKGKALTQSYIYQNVEKILAQSGIRKEKNGAHMLRHSFATLLYQQKHDLVMVQEAL 326 Query: 288 GHFRLSTTQIYTNVNSK 304 GH L+T++IYT+ +SK Sbjct: 327 GHADLNTSRIYTHFDSK 343 >gi|319427383|gb|ADV55457.1| ISSod25 integrase [Shewanella putrefaciens 200] Length = 287 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 59/225 (26%), Positives = 109/225 (48%), Gaps = 27/225 (12%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 +LK L+GI +++ R T + ++ K+ + LP+ L+ + + +L H Sbjct: 65 TLKLQLNGIHFLYEHVLGRDFTVQLSLP-----KRPHKLPQLLSCQD----IAALLYHCQ 115 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS 205 + + A+L L YGCGLR+SE + +I + L++ QGKG R+V + P+ Sbjct: 116 ------NLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGAYDRLVIISPT 169 Query: 206 VRKAILEYY-DLCPFDLNLNIQLPLFRGIRGK---PLNPGVFQRYIRQLRRYLGLPLSTT 261 + + +Y+ P + LF PL+ F++ + + R G+ + Sbjct: 170 LLTLLRQYWRAYHPVEW-------LFASTYHDVVYPLHESTFRKALAKSARLAGITKPCS 222 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 H+LRH++ATH L G L +Q+ LGH + +T+ Y + + + G Sbjct: 223 PHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPELG 267 >gi|237719899|ref|ZP_04550380.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229450451|gb|EEO56242.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 337 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 62/252 (24%), Positives = 118/252 (46%), Gaps = 23/252 (9%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN--EKQALTLVDNVLLHTSHET 149 LS +++FLKY+ R +T + L N+ + R + K+A+ +L ++ Sbjct: 92 LSALRAFLKYVADRDMTYMAVFLQAENIPNEKTPKRKVIGLSKKAV----KAILSVPNQR 147 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSVR 207 R+ ++ LLY +R++E L+L NI+ D + + + GKG K R +PLL Sbjct: 148 TATGFRDFTLMLLLYSTAIRVNELLTLKISNIVMDCTKPHMIVIGKGRKKRPLPLLSQPV 207 Query: 208 KAILEY---YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL--------GL 256 + + Y Y D++ I +G+ P + + L++Y + Sbjct: 208 QCLKRYLKKYHPKYNDMDALIFYSKSKGVYA----PMSAENVNKMLKKYALIAHETCEDV 263 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 PL+ AH RH+ A+H L NG ++ I +LGH + TT Y ++ ++ + + ++ Sbjct: 264 PLNLHAHQFRHAKASHWLENGMNIAQISYLLGHECIQTTMAYLDITTEQEEKALETLENE 323 Query: 317 THPSITQKDKKN 328 + ++ +K K N Sbjct: 324 SQKNMAKKWKNN 335 >gi|182418976|ref|ZP_02950232.1| tyrosine recombinase XerC [Clostridium butyricum 5521] gi|237668918|ref|ZP_04528902.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377259|gb|EDT74827.1| tyrosine recombinase XerC [Clostridium butyricum 5521] gi|237657266|gb|EEP54822.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E BL5262] Length = 334 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 79/302 (26%), Positives = 146/302 (48%), Gaps = 38/302 (12%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +LQ ++E S+ TL +Y R+F F+ + + ++ +IR +++ T Sbjct: 61 YLQVRKLE-NYSQATLSNYMYTLRKFASFIN---------KPVGTITKNDIRYYMAINFT 110 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + ++ ++ K+F ++L++ ++ ++ R+L ++ LP+ L + ++ Sbjct: 111 E-LKPSTVNNKIACFKAFFQWLEQEEMIPKNP---ARSLDETR-LPKRLRKSLTAEELER 165 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 V + +D R+ A++ L G R+SE +S +++ + +TL++ GKGDK R V Sbjct: 166 VRIAC------VDNRDRALVEFLVATGCRVSEVVSCNIKDLDLNDNTLKVIGKGDKERTV 219 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR------QLRRYL 254 + I +Y + D + + LF + P N + +R I +R L Sbjct: 220 CFTDKAKLYIRKYIEE---DRQKDNEDALFVSTKF-PYN-RISRRSIEVAISKIGIRANL 274 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G PL H LRH+ AT L +G D+ IQS+LGH STTQIY ++N D + Y Sbjct: 275 GKPL--FPHLLRHTMATLSLQSGADITIIQSLLGHTTPSTTQIY----AENSLDNLKHEY 328 Query: 315 DQ 316 Q Sbjct: 329 KQ 330 >gi|253583755|ref|ZP_04860953.1| integrase/recombinase [Fusobacterium varium ATCC 27725] gi|251834327|gb|EES62890.1| integrase/recombinase [Fusobacterium varium ATCC 27725] Length = 294 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 71/272 (26%), Positives = 121/272 (44%), Gaps = 19/272 (6%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T++S + D Q L+ Y + I+ I +++ +R FI + + ++G RS+ R LS Sbjct: 25 TIKSLKKDLSQ----LSEYLKNIEKIEDISKITPVMLRGFIIELQKNEVGKRSINRKLSS 80 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 ++SF KYL K +N++ ++ NS + LTL + ++ E ID Sbjct: 81 LRSFFKYLIK------NNLIKNNPIEIINSPSFEAEKPDILTLEE---INKLREVINIDN 131 Query: 155 ----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210 R+ IL LLY G+ +E L + Q D TL + G R V R+ Sbjct: 132 TNGLRDRLILELLYSSGITSTEMLGIGEQVFDLDNRTLLVSN-GKTNRTVFFSQRTREYF 190 Query: 211 LEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 Y + LF G L+ +R + + G+ + ++ RH+F Sbjct: 191 KRYIEAKKEKYKEKYNSSILFVNGSGNRLSDRSLRRIVDRYAAKAGITREISPYSFRHTF 250 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 A HLL+ G L +Q ++GH + +T+IY + Sbjct: 251 AVHLLAKGMGLNFLQELMGHVTIESTKIYQEI 282 >gi|229070581|ref|ZP_04203819.1| Integrase [Bacillus cereus F65185] gi|228712486|gb|EEL64423.1| Integrase [Bacillus cereus F65185] Length = 361 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 86/332 (25%), Positives = 137/332 (41%), Gaps = 45/332 (13%) Query: 16 KERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFL-----AFYTEEKIT------IQT 62 K + W ++ E++ LS TL +Y + +FL +L A + +T I T Sbjct: 17 KSKMPWYIIEYAEMKTALSPATLYAYITEFEKFLKWLISNRLAVENGKVVTNICDVPITT 76 Query: 63 IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122 + L E R F + + I R++ R+ S +KS KYL + + RN+ + Sbjct: 77 LENLPLNEARTFQRYLQGEGIETRAINRTFSALKSLFKYLAQNTENEQGENYISRNVMEK 136 Query: 123 NSLPRA---------------LNEKQALTLVDNVLLHTSHETKWID-----------ARN 156 L + NEK + + + K I R+ Sbjct: 137 IELHKEKVDAAARADDVANMIFNEKDDVAFLQFLANDYGEMLKDISPKKYSFFQRDKERD 196 Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 AI+ L+ G GLR+SE SLT +I Q +++ KG+K V S + I EY + Sbjct: 197 IAIISLILGTGLRVSEVASLTISSINFRQGKVKVTRKGNKRSSVLATRSCLEDIQEYIRV 256 Query: 217 CPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQL--RRYLGLPLSTTAHTLRHSFATH 272 P N + L +GK V R I++L + + H LRH++AT+ Sbjct: 257 RPSKYNCPQDEDLLFVTNYKGKYTQLTV--RAIQKLCDKYSSAFDEKRSPHKLRHTYATN 314 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 DL ++ LGH + T IYTN+N+K Sbjct: 315 HYKENKDLVLLRDQLGHTSVEVTSIYTNINNK 346 >gi|325997549|gb|ADZ49757.1| XERCD family protein/integrase/recombinase [Helicobacter pylori 2017] Length = 363 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 94/194 (48%), Gaps = 14/194 (7%) Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 N N LP LN ++ +D++ + + ARN ++ ++ G+R +EAL L Sbjct: 165 NQSAGNKLPTHLNNEELEKFLDSI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 222 Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231 ++ + T+ I+GKGDK R V L + S+ K L +L P +L LF Sbjct: 223 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLTERELYPVKNDL-----LFC 277 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290 +G L + + ++ + GL AH LRHSFAT L DL +Q LGH Sbjct: 278 NQKGMALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 337 Query: 291 RLSTTQIYTNVNSK 304 L+T++IYT+ + + Sbjct: 338 SLNTSRIYTHFDKE 351 >gi|91786614|ref|YP_547566.1| phage integrase [Polaromonas sp. JS666] gi|91695839|gb|ABE42668.1| phage integrase [Polaromonas sp. JS666] Length = 414 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 77/294 (26%), Positives = 126/294 (42%), Gaps = 36/294 (12%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLA--FYTEEKITIQTIRQLSYTEIRAFISKRRT 80 ++++ ERGLS +T+ + R FL +LA E T+ ++ AF+S R Sbjct: 127 RHMQRERGLSPITINNRCWHVRAFLTWLAEQHRGAEDATLH--------QVDAFLSMRGV 178 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL--- 137 Q S+ + + ++SF ++ E + + L +++AL + Sbjct: 179 QGWCRASIATAATALRSFYAHMTATGRCAEGFVAGIEGPP--------LFKQEALAVGPC 230 Query: 138 VDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 D+V L+ ++ + D R+ IL LL GLR E ++LT +I ++ L + Sbjct: 231 WDDVQRLIASTDTDQPRDIRDRVILMLLAIYGLRRGEVVALTLDDIDWERDILHVARPKQ 290 Query: 196 KIR-IVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 + + PL V AIL Y L L ++ PL PL P + Sbjct: 291 RCKHDYPLTTEVGNAILRYVREVRPRCASRRLFLTLKAPLV------PLAPNGLHHAVAS 344 Query: 250 LRRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 LG+ T H LRH+ ATHL++ G L+ I LGH S T+ Y V+ Sbjct: 345 RLEALGIRCPRTGPHALRHACATHLVAEGLSLKQIGDHLGHRSASATRTYAKVD 398 >gi|1403511|emb|CAA67039.1| integrase [Pseudomonas aeruginosa] Length = 336 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 77/310 (24%), Positives = 127/310 (40%), Gaps = 58/310 (18%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 33 TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 83 LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207 + LLYG G+RISE L L +++ D T+ + +GKG K R ++P L P++R Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPTLREQ 191 Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +A + F + + P +R Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT I Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311 Query: 298 YTNVNSKNGG 307 YT+V G Sbjct: 312 YTHVLKVGGA 321 >gi|325103320|ref|YP_004272974.1| integrase family protein [Pedobacter saltans DSM 12145] gi|324972168|gb|ADY51152.1| integrase family protein [Pedobacter saltans DSM 12145] Length = 279 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 74/276 (26%), Positives = 134/276 (48%), Gaps = 31/276 (11%) Query: 33 KLTLQSYECDT-RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 KL +Q Y +T R ++ + + + +++ + I FI+++ + S ++ Sbjct: 13 KLVIQRYASNTIRSYMDYAGLFLKYVDKFASLKDVPIAIIETFINEKVENENISASYQKG 72 Query: 92 LSG-IKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQALTLVDNVLLHTSHET 149 L G IK + + KI+ L+ K+S S LP+ ++++ L+D+ Sbjct: 73 LVGAIKKLYELILDEKIS-----LDYLYPKRSFSKLPKFFSKEEVRKLLDSTE------- 120 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRK 208 + ++ A+L +Y CGLR++E L+L +I +RI Q KG+K RIV L + Sbjct: 121 ---NLKHKAMLMTIYSCGLRLNELLNLRISDIRSSDKIIRINQSKGNKDRIVSLPDKLLT 177 Query: 209 AILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + +YY + P LF G + + Q +++ + T H+L Sbjct: 178 ILRDYY---------QVYKPSHYLFEGEKRNRYSERSVQLVLKKALAKAKIKTEGTVHSL 228 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 RHS+ATHL+ +G D+R +Q +LGH + TT IYT++ Sbjct: 229 RHSYATHLIQSGIDVRIVQELLGHENIKTTMIYTHI 264 >gi|238059127|ref|ZP_04603836.1| integrase [Micromonospora sp. ATCC 39149] gi|237880938|gb|EEP69766.1| integrase [Micromonospora sp. ATCC 39149] Length = 333 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 75/282 (26%), Positives = 126/282 (44%), Gaps = 20/282 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT-EIRAFISK 77 + WL+N R LS+ T +Y D +L + + + + +Y E+ A + Sbjct: 28 EAWLRN----RRLSEHTRDAYRRDVAGWLAWCRARQLDPLRANFLDVNAYGRELEATPAA 83 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN---LKKSNSLPRALNEKQA 134 R + + ++ R LS + S+ +L K + E+N + + + + +S L ++ Sbjct: 84 RSGRPLTPATVARKLSALSSWYDFLVKLR-AIEANPVTAADRPRVDRDHSSTVGLTPQE- 141 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQG 192 VD +L E+ ARN A + LL GLR+ E +SL ++ ++ ++R G Sbjct: 142 ---VDALLAAAQAESGPTAARNRAAVALLADLGLRVGELVSLDLADLGAERGHRSVRFVG 198 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-QL--PLFRGIRGKPLNPGVFQRYIRQ 249 KG K R L PS A+ Y + QL PL G L+ R +R+ Sbjct: 199 KGGKPRRRALTPSTAYAVDAYLAERAAAQGVGTHQLTGPLLVTATGARLDRHSVFRLVRR 258 Query: 250 LRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGH 289 L R G+P + H+LRH+FAT + G L +Q +GH Sbjct: 259 LARTAGIPAWAKLSPHSLRHAFATTARAEGVPLEDVQDAMGH 300 >gi|261883696|ref|ZP_06007735.1| phage integrase family site specific recombinase [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 171 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/142 (35%), Positives = 79/142 (55%), Gaps = 9/142 (6%) Query: 166 CGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN- 222 G+R+SEAL+L ++I +D LRI+GKG+K RIV ++K +++ + L +N Sbjct: 19 TGIRVSEALNLKRKDISEDGDLYILRIRGKGNKYRIVM----IKKHLIDEH-LQNIAINY 73 Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLR 281 +N + LF G+ L R + Q+ G+ AH LRH+FAT L DL Sbjct: 74 INSEGYLFVNRNGEKLTQAYVSRIVEQILFGAGIRKEKNGAHMLRHTFATMLYKKQKDLV 133 Query: 282 SIQSILGHFRLSTTQIYTNVNS 303 +Q LGH L+T++IYT+ +S Sbjct: 134 LVQEALGHASLNTSRIYTHFDS 155 >gi|313144154|ref|ZP_07806347.1| integrase/recombinase XerD [Helicobacter cinaedi CCUG 18818] gi|313129185|gb|EFR46802.1| integrase/recombinase XerD [Helicobacter cinaedi CCUG 18818] Length = 354 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 62/197 (31%), Positives = 96/197 (48%), Gaps = 24/197 (12%) Query: 120 KKSNSLPRALNEKQA---LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 K LP LN+ + L +D L + + ARN I+ L+ G+R+SEAL+L Sbjct: 120 KSGQKLPAYLNQDELERFLQAIDEAEL-----GEKVAARNKLIIKLIVYTGIRVSEALNL 174 Query: 177 TPQNIMD--DQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-----DLCPF-DLNLNIQLP 228 ++I D ++I+GKG+K R+ + S + +L+ + P DL Sbjct: 175 RRKDIYPHLDCYIIQIRGKGNKPRVAMIRQSHIQNLLDVWLTQRLSFAPLHDL------- 227 Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 LF +GK L + + ++ G+ AH LRHSFAT L DL +Q L Sbjct: 228 LFCNTKGKALTQSYIYQNVEKILAQSGIRKEKNGAHMLRHSFATLLYQQKHDLVMVQEAL 287 Query: 288 GHFRLSTTQIYTNVNSK 304 GH L+T++IYT+ +SK Sbjct: 288 GHADLNTSRIYTHFDSK 304 >gi|7339576|emb|CAB82887.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 334 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 77/310 (24%), Positives = 125/310 (40%), Gaps = 58/310 (18%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 33 TEQAYVNWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 83 LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL----LPSVR-- 207 + LLYG G+RISE L L +++ D T+ + +GKG K R + L PS+R Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPEAVAPSLREQ 191 Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +A + F + + P +R Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT I Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311 Query: 298 YTNVNSKNGG 307 YT+V G Sbjct: 312 YTHVLKVGGA 321 >gi|241992584|gb|ACS73643.1| IntI1 [uncultured bacterium] Length = 315 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 57/177 (32%), Positives = 82/177 (46%), Gaps = 37/177 (20%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207 LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198 Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 +A + F + + P +R + FQ Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 R ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT V Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTQV 315 >gi|257093399|ref|YP_003167040.1| integrase family protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045923|gb|ACV35111.1| integrase family protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 305 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 80/157 (50%), Gaps = 16/157 (10%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYD 215 + LY GLR+ E L LT +I D + R+ KG+K R+VPL + + + ++ Sbjct: 132 FFFTLYSLGLRLGEGLRLTVGDI--DGACERVHIRDAKGNKDRLVPLPTATHQLLRRFWQ 189 Query: 216 -------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 L P N + L R R PL+ G Q+ +R + G+ + H+LRH+ Sbjct: 190 RHRNPVLLFP---NRHGGLAGARAAR-TPLDRGGVQKALRAVVESCGVKKHISPHSLRHA 245 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 +ATHL+ G +L +Q ILGH + TT YT++ ++ Sbjct: 246 YATHLVEAGVELTEVQDILGHHSILTTVRYTHLTDRS 282 >gi|319655065|ref|ZP_08009133.1| hypothetical protein HMPREF1013_05756 [Bacillus sp. 2_A_57_CT2] gi|317393243|gb|EFV74013.1| hypothetical protein HMPREF1013_05756 [Bacillus sp. 2_A_57_CT2] Length = 279 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 75/275 (27%), Positives = 134/275 (48%), Gaps = 31/275 (11%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 +G S TL+ Y+ Q + + ++ + KIT ++ I+ ++ + + + SL Sbjct: 17 QGYSSQTLKVYKV---QMSLLIKYFGDIKIT-----DITTESIKLYLGEVAAE-LKASSL 67 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 + IKS K+ ++ K + + + ++ K + +P+ L E++ LL + + Sbjct: 68 CHRIRFIKSLFKWAQEEKYVSVNPVSTIKEPKPESRIPKFLTEEEI------ELLREACK 121 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVR 207 T + A+ +Y G RI E + L +I M +QS + + GKG K R V + R Sbjct: 122 TTF----EKALFEFMYSTGCRIGEVVKLDRHSINMAEQSVI-VFGKGKKEREVYF--NTR 174 Query: 208 KAI-LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ-RY-IRQLRRYLGLPLSTTAHT 264 +I L+ Y + + Q LF IR P + Q RY I+Q+ + G+ H Sbjct: 175 CSIWLKRY----LEERYDDQQALFVTIRA-PHRMSIAQMRYVIKQISKRAGINKCIHPHQ 229 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 LRHS+AT L++NG L IQ+++GH + TT++Y Sbjct: 230 LRHSYATTLINNGAPLEVIQNLMGHEKSETTRVYA 264 >gi|38637707|ref|NP_942681.1| Orf2/integrase/recombinase fusion protein [Ralstonia eutropha H16] gi|32527045|gb|AAP85795.1| Orf2/integrase/recombinase fusion protein [Ralstonia eutropha H16] Length = 875 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 83/299 (27%), Positives = 136/299 (45%), Gaps = 34/299 (11%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ---LSYTEIRAFI 75 Q +++ L R LSK T+ +Y R+FL + + +I + +R +++ + +A Sbjct: 584 QAYVEYLHEARALSKATIVNYVPFIREFL--EDCFGDGRIRLSRLRAGDVVNFVQCQAL- 640 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT---ESNILNMRNLKKSNSLPRALNEK 132 ++ + K + ++SFL+Y R T + + + N S+PR + + Sbjct: 641 ------RLHLKRAKLMTTALRSFLRYACYRGDMTLDLAAAVPVVANWSM-QSIPRGIPPE 693 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 Q L+ ++ T+ + R+ AI+ LL GLR E L +I + L ++G Sbjct: 694 QIQQLLVSINRRTA-----VGRRDYAIILLLARLGLRSGEVAFLELDDIDWNTGVLSVRG 748 Query: 193 KGDKIRIVPLLPSVRKAILEYY-DLCPFDLN----LNIQLPL--FRGIRGKPLNPGVFQR 245 K + +PL V KAI Y D P + L + P+ FRG G G R Sbjct: 749 KSGQRNGLPLPADVGKAIAAYLRDGRPQSTSRRVFLRAKAPVIGFRGASGV----GSIVR 804 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + Q R + P +T AH RH A +LS+G L I +LGH TT+IYT V+ K Sbjct: 805 HSLQ-RAGIDAP-TTGAHQFRHGLACQMLSHGASLSEIGELLGHHHPQTTKIYTKVDIK 861 >gi|294506890|ref|YP_003570948.1| Integrase [Salinibacter ruber M8] gi|294343218|emb|CBH23996.1| Integrase [Salinibacter ruber M8] Length = 261 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 81/190 (42%), Gaps = 37/190 (19%) Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV--------PLLPSV 206 N I +LLYG GLR+SEAL L + + S L ++ GKG K R PL + Sbjct: 59 NRLIAHLLYGSGLRLSEALRLRVKELDVGTSRLHVRDGKGRKDRTTVLPERLHGPLRRHL 118 Query: 207 RKAILEYYDLCP----------------------------FDLNLNIQLPLFRGIRGKPL 238 + ++ C F + P +R Sbjct: 119 KTVKAQHEADCADGVGGVYLPDAIAEKHPNAKTEWRWQYVFPSTTLSEDPRSGAVRRHHR 178 Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + QR ++ + T HTLRHSFATHLL +G D+R+IQ +LGH +L TT Y Sbjct: 179 SDSAVQRAVKNAADAADIEKRATCHTLRHSFATHLLQDGTDVRTIQKLLGHEQLRTTMQY 238 Query: 299 TNVNSKNGGD 308 +V ++G D Sbjct: 239 IHVLEQSGAD 248 >gi|241992522|gb|ACS73599.1| IntI1 [uncultured bacterium] Length = 315 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 76/304 (25%), Positives = 126/304 (41%), Gaps = 58/304 (19%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 33 TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 83 LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKG--DKIRIVP--LLPSVR-- 207 + LLYG G+RISE L L +++ D T+ + +GKG D+ ++P L PS+R Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSRDRALMLPESLAPSLREQ 191 Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +A + F + + P +R Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT I Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311 Query: 298 YTNV 301 YT+V Sbjct: 312 YTHV 315 >gi|283957150|ref|ZP_06374614.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni 1336] gi|283791326|gb|EFC30131.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni 1336] Length = 354 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 78/274 (28%), Positives = 134/274 (48%), Gaps = 35/274 (12%) Query: 45 QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK 104 ++L F Y+ ++I + I E+ A I T + D S K + +F +L K Sbjct: 85 EYLNFYKLYSLKQIDEELI-----VEVLASI----TGALSDASKKNYRIAVINFFDFLDK 135 Query: 105 RKITTE-SNILNMRNLK--------KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155 + E ++I N+ NLK K LP ++E++ +D + + + K R Sbjct: 136 QNEEDEKAHIFNI-NLKNWAGIAGSKGVKLPEFMSEEELKKFLDAI---ENADFKNNTIR 191 Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213 N I+ ++ G+R+SEA+++ +I + D +RI+ KG+K R+V ++K ++ Sbjct: 192 NKLIIKIIIFTGIRVSEAINIKMGDISEENDLYIIRIRAKGNKYRVV----MIKKELI-- 245 Query: 214 YDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSF 269 YDL ++++N LF +G PL R + QL G+ AH LRH+F Sbjct: 246 YDLLK-NVSINYMSKDALLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHMLRHTF 304 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 AT L DL +Q LGH L+T++IYT+ ++ Sbjct: 305 ATLLYKKQKDLILVQEALGHASLNTSRIYTHFDN 338 >gi|4210823|emb|CAA11470.1| intI1 [Pseudomonas aeruginosa] Length = 337 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 77/310 (24%), Positives = 127/310 (40%), Gaps = 58/310 (18%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 33 TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 83 LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207 + LLYG G+RISE L L +++ D T+ + +GKG K R ++P L P++R Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPTLREQ 191 Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +A + F + + P +R Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT I Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311 Query: 298 YTNVNSKNGG 307 YT+V G Sbjct: 312 YTHVLKVGGA 321 >gi|256377530|ref|YP_003101190.1| integrase family protein [Actinosynnema mirum DSM 43827] gi|255921833|gb|ACU37344.1| integrase family protein [Actinosynnema mirum DSM 43827] Length = 324 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 78/164 (47%), Gaps = 17/164 (10%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212 R+ +L L GLR E +LT +++ + L + GKG++ R VP+ P++ + + E Sbjct: 143 RDVLVLALGLVAGLRSVEMRTLTLASVVGRSGERRLHVLGKGNRDRSVPIEPAMERVVDE 202 Query: 213 YYDLC----P---FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL----PLSTT 261 Y C P FD L R G+P+ G + +R R+ GL P Sbjct: 203 YLASCRKRFPQGRFDRGSA----LLRDRHGEPIGRGGLEYLVRSCFRWAGLHDRVPSGAN 258 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 H LRH+FAT L +G I ++LGH L+T+Q Y ++ Sbjct: 259 LHALRHTFATRLAEDGATASEIMALLGHASLATSQNYIEATARE 302 >gi|134287704|ref|YP_001109870.1| phage integrase family protein [Burkholderia vietnamiensis G4] gi|134132354|gb|ABO60089.1| phage integrase family protein [Burkholderia vietnamiensis G4] Length = 291 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 104/225 (46%), Gaps = 28/225 (12%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 SL +++G+K F R + M+ ++ LP L+ ++ L+ + Sbjct: 71 SLNAAIAGLKFFFDVTLDRA----ELMAKMQPVRVPQRLPVVLSREEVGRLI-AASGNLK 125 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS 205 H+T L L YG GLR SE ++L +I + TLR+ QGKG K R L P Sbjct: 126 HQTA---------LSLAYGTGLRASEVVALKVCDIDSQRMTLRVEQGKGRKDRYAMLSPV 176 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG-------LPL 258 + + + ++ + + LF G LNP + RQL R + + Sbjct: 177 LLERLRVWWRVARAQGKMLDGGWLFPG-----LNP-IESLSTRQLNRAIHAAAAEAKIDK 230 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + HTLRH FATHLL D+R IQ +LGH +L TT +YT V + Sbjct: 231 RVSMHTLRHCFATHLLEQKVDIRVIQVLLGHKQLDTTALYTQVAT 275 >gi|116619765|ref|YP_821921.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116222927|gb|ABJ81636.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 332 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 79/295 (26%), Positives = 128/295 (43%), Gaps = 32/295 (10%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI---SKRRTQ 81 L +R S T+ SY R L F + + + L + + AF+ RR Sbjct: 19 LMAQRKASPHTIASYRDTFRLLLQFAQMRLRKAPSQLGLEDLDASLVGAFLEDLGNRRHN 78 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD-- 139 R+L+ L+ I+SF +Y + S I+ ++ ++P N++Q TLV Sbjct: 79 GARSRNLR--LTAIRSFFRY-ASLEAPAHSGII-----QRVLAIP---NQRQRRTLVGFL 127 Query: 140 -----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGK 193 + LL + T+W+ R+ A L GLR+SE L +++ + + +R +GK Sbjct: 128 TRPEIDALLAAPNRTQWLGRRDHAFLLTAVQTGLRLSEMTGLRHEDVSLGAGAHVRCRGK 187 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ----RYIRQ 249 G K R PL A+L+ + + LF RG PL+ Q R++ + Sbjct: 188 GRKERCTPLAKPT-AAVLKAWIR---EQGRGDSKTLFPSTRGGPLSADGVQHLLARHVAK 243 Query: 250 LRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 R++ + H LRH+ A LL G D I LGH + TTQIY + + Sbjct: 244 ARKHCASLRKKRVSPHVLRHAAAMELLQAGVDRAVIALWLGHESVETTQIYLDAD 298 >gi|89147430|gb|ABD62575.1| integrase [uncultured bacterium] Length = 163 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 34/69 (49%), Positives = 45/69 (65%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 +R P QR +R R+ G+ T HTLRHSFATHLL +G D+R++Q +LGH + Sbjct: 94 VRRHHAGPESIQRALRDALRHAGIAKHATPHTLRHSFATHLLDDGYDIRTVQELLGHKDV 153 Query: 293 STTQIYTNV 301 STT IYT+V Sbjct: 154 STTMIYTHV 162 >gi|27363605|ref|NP_759133.1| site-specific recombinase XerD [Vibrio vulnificus CMCP6] gi|27359721|gb|AAO08660.1| Site-specific recombinase XerD [Vibrio vulnificus CMCP6] Length = 348 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 68/257 (26%), Positives = 116/257 (45%), Gaps = 34/257 (13%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S K +++ I+ F +L KR++ ++ ++ K LPR + K A LL Sbjct: 81 SRKVAVAAIRGFYSFLAKRRLVAKNPASDLVYPKIGRRLPRFMGLKSA-----EALLFQP 135 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM------DDQSTLRIQGKGDKIRIV 200 T R+SA+L LL GCG R++ L ++ ++ +R KG++ R+V Sbjct: 136 ELTSLSGVRDSAMLSLLIGCGFRVAGLCGLNESQLIWYQYGEVERLAIRTMEKGERERLV 195 Query: 201 PLLPSVR---KAILEYYDLCPFD-----------LNL-NIQLPLFRGIRG--KPLNPGVF 243 P+ +A L + DL D +NL N +P + RG + L+ Sbjct: 196 PVPLEAMLLVQAYLGHPDLKHVDRLLDDGDQVLFVNLRNRHVPEWEH-RGELRRLSTRAV 254 Query: 244 QRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 R I++ G+P AH LRH F T L + IQ+++GH T++IYT+++ Sbjct: 255 DRMIKKYAIAAGVPEDQAHAHALRHLFGTELAESDSSTLQIQALMGHADPKTSEIYTHIS 314 Query: 303 SKNGGDWMMEIYDQTHP 319 + M + D+ +P Sbjct: 315 MRK----MTNVLDKGNP 327 >gi|306519780|ref|ZP_07406127.1| putative tyrosine recombinase [Clostridium difficile QCD-32g58] Length = 290 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 67/284 (23%), Positives = 130/284 (45%), Gaps = 15/284 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE--IRAFIS 76 + ++ ++ ++ LS+ T+ SY D ++++ E I ++I+ + E I +++ Sbjct: 5 EGYIDYIKDKKKLSENTVASYFMDIKKYM--------EYINQKSIKLVDIVENDIISYLI 56 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 K + ++ R +S IKSF YL I T + +++ K L E++ Sbjct: 57 KLEKDNVSIATIARMISSIKSFHDYLFLNHICTNNPAKDIKKPKIKKENINILTEEEIER 116 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L++ L T K I R+ AI +LYG G+++SE + + ++I D + Sbjct: 117 LLNFPKLTTP---KLI--RDKAIFEVLYGTGIKVSELVEMNIEDIDLDIDYIYCNSCCKN 171 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 R++PL + + +Y + + + LF G+ + I++ + Sbjct: 172 QRVIPLCDITKLYLEKYLKEARPKMAVEGEKSLFVSSLGQRFTRQGLWKVIKKYSNLANI 231 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + LRHSFA HLL+ G ++ + ILG+ LS+ Q+Y N Sbjct: 232 DKNINPTMLRHSFAIHLLNEGANIAVVSKILGNVNLSSLQVYLN 275 >gi|60256918|gb|AAX14941.1| integrase [Xanthomonas campestris pv. oryzae] Length = 315 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 85/178 (47%), Gaps = 39/178 (21%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYD----- 215 LLYG G+R+ E L L +++ + + ++ GKG K R VP S+R +++ + Sbjct: 131 LLYGSGMRLLECLRLRIKDVDVVRGEIVVRDGKGGKDRRVPPPHSLRGELMQQRERALLL 190 Query: 216 ------------LCPFDL-----NLNIQLP---LFRGIRGKPLNP------------GVF 243 P L N N++ LF R + ++P V Sbjct: 191 HAADLAEGAGRVFLPHALARKYPNANVEPGWQYLFLAAR-RSVDPRSGRVGRHHVSEEVL 249 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 QR ++ RR G+ T HTLRHSFATHLL G D+ ++Q +LGH ++T QIY +V Sbjct: 250 QRAVQSARRQAGIAKPATCHTLRHSFATHLLEAGHDIATVQELLGHKDVTTKQIYAHV 307 >gi|167758606|ref|ZP_02430733.1| hypothetical protein CLOSCI_00946 [Clostridium scindens ATCC 35704] gi|167663802|gb|EDS07932.1| hypothetical protein CLOSCI_00946 [Clostridium scindens ATCC 35704] Length = 346 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 71/290 (24%), Positives = 132/290 (45%), Gaps = 17/290 (5%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87 +R S T+++Y QFL + A + T ++Y + A++ +K + Sbjct: 24 QRKASGNTVKAYRTALNQFLKYTAGRKNISVLSVTFGMVTYKTVNAYLDWLSVEKNATPA 83 Query: 88 LKRS-LSGIKSFLKY---LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 + + L+ +++F+ Y + I+ S + + ++K+ + + + V +L Sbjct: 84 TRNNRLAALRAFVSYAAACRPEYISVASELTTI-GIQKNERFAKV--DYMSEEAVKALLA 140 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPL 202 +T+ I R+ ++ LY G RI E L + +I +D T+ + GKG K R VPL Sbjct: 141 EPDTKTE-IGVRDQFLMIFLYDTGARIQEVLDVKICDIKVDRTPTVTLHGKGKKTRSVPL 199 Query: 203 LPSVRKAILEYYDLC-PFDLNLNIQLPLF---RGIRGKPLNPGV---FQRYIRQLR-RYL 254 + K + Y + P + L+ + + +G R + V Q+Y R + Sbjct: 200 MKDTVKHLQNYMKVFHPGETWLSSEWLFYVERKGNRNAMCDDTVRLRIQKYAASAREKCP 259 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 +PL+ H RH+ A HL +G DL I LGH +L TT IY + +++ Sbjct: 260 DVPLNVHPHLWRHTRAMHLYQHGMDLTLISQWLGHKQLETTLIYAHADTE 309 >gi|13445488|gb|AAK26251.1|AF263519_1 integrase INTI1 [Pseudomonas aeruginosa] Length = 337 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 62/200 (31%), Positives = 92/200 (46%), Gaps = 38/200 (19%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207 LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198 Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 +A + F + + P +R + FQ Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 R ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V K Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV-LK 317 Query: 305 NGGDWMMEIYDQTHPSITQK 324 GG + D P +++ Sbjct: 318 VGGAGVRSPLDALPPLTSER 337 >gi|89147428|gb|ABD62574.1| integrase [uncultured bacterium] Length = 163 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 34/69 (49%), Positives = 45/69 (65%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 +R P QR +R R+ G+ T HTLRHSFATHLL +G D+R++Q +LGH + Sbjct: 94 VRRHHAGPESVQRALRDALRHAGIAKHATPHTLRHSFATHLLDDGYDIRTVQELLGHKDV 153 Query: 293 STTQIYTNV 301 STT IYT+V Sbjct: 154 STTMIYTHV 162 >gi|237795760|ref|YP_002863312.1| phage integrase [Clostridium botulinum Ba4 str. 657] gi|229261691|gb|ACQ52724.1| phage integrase [Clostridium botulinum Ba4 str. 657] Length = 330 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 81/303 (26%), Positives = 148/303 (48%), Gaps = 27/303 (8%) Query: 6 LPE---IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT 62 LPE +V+ ++ ++ Q +L + +++ GLS TL++Y+ + IF + TI T Sbjct: 43 LPEETGLVTSDIEEKLQIYLASKKLD-GLSLKTLKNYQYN---LAIFADHLRKPLGTITT 98 Query: 63 IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122 + ++R F++ R + + S+ +S +KSF +L + ++ ++ K+ Sbjct: 99 M------DLRMFLA-VRCKNMKATSVNGQISILKSFFGWLHDEEYIPKNPAKKLKQTKEP 151 Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 L A+ E++ LL + +T R A++ L G R+SE + + ++ Sbjct: 152 KRLRHAMTEEEV------ELLRQASKTD----REKALVEFLISTGCRLSEVVGVNKDDLN 201 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242 + +L + GKG+K R V + K +L+ Y L D N + + R G+ L Sbjct: 202 WHEMSLNVIGKGNKERKV-YFSTKAKILLKKYLLTRKDDNEALFVTSKRP-HGR-LGGRS 258 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 QR I+++ GL S H RHSFAT +++G L +Q I+GH STTQ+Y ++ Sbjct: 259 VQREIKKIANRAGLNKSVYPHLFRHSFATCKINSGMPLPVLQHIMGHESPSTTQVYAQLS 318 Query: 303 SKN 305 +N Sbjct: 319 EEN 321 >gi|229015245|ref|ZP_04172280.1| hypothetical protein bmyco0001_55910 [Bacillus mycoides DSM 2048] gi|228746047|gb|EEL96015.1| hypothetical protein bmyco0001_55910 [Bacillus mycoides DSM 2048] Length = 280 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 70/288 (24%), Positives = 126/288 (43%), Gaps = 28/288 (9%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 G S LTL++Y Q+ + L ++ + ++ T +L I A + + SL Sbjct: 18 GYSPLTLKTY---CFQYNLLLRYFGDINMSEFTTEKLKGYLIEA------GEHLKPSSLG 68 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 + IKS ++ ++ ++ K +P+ L+E + L + H S E Sbjct: 69 HRVRCIKSLFRWTHDEGFILKNPAAKLKEPKLGKKIPKFLSELEIEHLREAC--HNSME- 125 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 +A+ LY G RI E + L +I +++ + GKGDK R V Sbjct: 126 -------NALFEFLYSTGCRIGEVVKLNRVDINFSTNSVIVHGKGDKEREVYFNTRCTIW 178 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKP---LNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 + Y D + + P +P ++ + I+++ + S H LR Sbjct: 179 LKRYLD------ERDDEEPCLFITERRPKRRMSIDNLRFIIKRISNRARIKKSIHPHQLR 232 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 HS+ATH+++NG L IQS+LGH + TT+IY ++ K D+ ++ + Sbjct: 233 HSYATHMINNGAPLEVIQSLLGHEKSETTRIYAQLSGKLRHDFYIKYF 280 >gi|257095506|ref|YP_003169147.1| integrase family protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048030|gb|ACV37218.1| integrase family protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 282 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 80/292 (27%), Positives = 126/292 (43%), Gaps = 37/292 (12%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 L+ER + N RG++ ++Y L+ LA Y ++ L E++A+ Sbjct: 4 LRER---MSNAMCLRGMAARAQEAYI----DALVGLAKYYH-----RSPADLRVEEVQAY 51 Query: 75 ISKRRTQKIGDRSLK-RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 + I D+ L S++ ++L +R + ++ K LP+ L+ ++ Sbjct: 52 L----LHLIRDKKLAYASVNQASCAFRFLYRRVLGRPEAGFDIPMAKVPQRLPQILSREE 107 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRI- 190 L+D+ R +L Y GLR+SE +L +I D+ L++ Sbjct: 108 VARLIDSAR----------TLRGRTLLMTTYAAGLRVSEVCALQVGDIESAADRMCLKVR 157 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-PLNPGVFQRYIRQ 249 QGKG K R L P + A+ Y+ + +L LF G P+ QR Sbjct: 158 QGKGGKDRYTLLSPHLLAALRTYWR------DTRPRLWLFPNRAGTGPMEIQTAQRIYYA 211 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 R G+ H LRH+FATHLL G DL SI +LGH LSTT Y ++ Sbjct: 212 ARNAAGIAPEGGIHGLRHAFATHLLEAGVDLYSIGRLLGHGHLSTTSRYLHL 263 >gi|150377511|ref|YP_001314106.1| phage integrase family protein [Sinorhizobium medicae WSM419] gi|150032058|gb|ABR64173.1| phage integrase family protein [Sinorhizobium medicae WSM419] Length = 330 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 85/317 (26%), Positives = 140/317 (44%), Gaps = 32/317 (10%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 M+ N P ++ ++ + L + S+ T+ Y R + + + T Sbjct: 1 MKATNFPALI-------QRFFTDRLCTQMEASQHTIAGYRDTFRLLIRYAGSRCGKPPTK 53 Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRS--LSGIKSFLKYLKKRKITTESNILNMRN 118 TI L + F+S T + G+ + R+ L+ I+SF +Y+ +T + +L+ + Sbjct: 54 LTIEDLDADLVADFLSHVETTR-GNTARTRNARLAAIRSFFRYVA---MTDPTWLLHCQR 109 Query: 119 LKKSNSLPRALNEKQALTLVDN----VLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174 + S+P K+++T +D LL T W+ R+ A+L L GLR SE + Sbjct: 110 IL---SMPSKRYVKRSVTFLDAQEIAALLVAPDRTTWVGRRDHALLLLALQTGLRASELI 166 Query: 175 SLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233 SL +++ + + +R GKG K R PL K I + + PLF I Sbjct: 167 SLRCKDVVLGAGAHIRCVGKGRKERSTPLRRDTAKLIQGW-----IGERRDSDSPLFPSI 221 Query: 234 RGKPLNPGVFQRYIRQ--LRRYLGLPL----STTAHTLRHSFATHLLSNGGDLRSIQSIL 287 RG+ L+ + +R+ L P T HTLRHS A LL +G D I L Sbjct: 222 RGERLSRDALEHLVRKHCLTASRTCPSLASKRVTPHTLRHSTAMELLHHGVDQSVIALWL 281 Query: 288 GHFRLSTTQIYTNVNSK 304 GH + TTQIY + + + Sbjct: 282 GHESVETTQIYIHADMR 298 >gi|45766|emb|CAA33849.1| unnamed protein product [Plasmid R1033] gi|530804|gb|AAB59999.1| IntI1 integrase [Pseudomonas aeruginosa] Length = 337 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 77/310 (24%), Positives = 127/310 (40%), Gaps = 58/310 (18%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 33 TEQAYVNWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 83 LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207 + LLYG G+RISE L L +++ D T+ + +GKG K R ++P L P++R Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPTLREQ 191 Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +A + F + + P +R Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT I Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311 Query: 298 YTNVNSKNGG 307 YT+V G Sbjct: 312 YTHVLKVGGA 321 >gi|297539030|ref|YP_003674799.1| integron integrase [Methylotenera sp. 301] gi|297258377|gb|ADI30222.1| integron integrase [Methylotenera sp. 301] Length = 313 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 62/178 (34%), Positives = 78/178 (43%), Gaps = 39/178 (21%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPS----------VRKAI 210 LLYG GLR+SE + L ++I TL ++ GKG K R LLPS V A Sbjct: 123 LLYGAGLRVSECIGLRVKDIDFGAKTLTVRDGKGGKDRTT-LLPSQLIERLQKHLVMVAQ 181 Query: 211 LEYYDLCPFDLNLNIQLPLFRG-------------IRGKPLNP--------------GVF 243 L D+ + L+R K L P Sbjct: 182 LHSADIAKGGGYAAMPNALYRKYPAASRSIAWQFVFPSKVLRPWQNEFQLARWHMSDTTI 241 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 QR + G+ + HTLRHSFATHLLS G D+R+IQ +LGH L TT IYT+V Sbjct: 242 QRAFKSALNLAGVRKHASVHTLRHSFATHLLSAGTDIRTIQLLLGHRSLQTTMIYTHV 299 >gi|94310217|ref|YP_583427.1| phage integrase [Cupriavidus metallidurans CH34] gi|93354069|gb|ABF08158.1| tyrosine-based site-specific recombinase [Cupriavidus metallidurans CH34] Length = 331 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 87/321 (27%), Positives = 136/321 (42%), Gaps = 43/321 (13%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE---- 56 M +LP +V ++ + Q L ++GLS T+ SY DT F + LAF T+ Sbjct: 1 MSAASLPALV-------QRFFTQRLLEQQGLSSHTVASYR-DT--FRLLLAFATKHIGRA 50 Query: 57 --KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK---ITTES 111 K+ I+ E + R + R+ + L+ + +F +++ + Sbjct: 51 PSKLRIEDFDVSLIEEFLQHLEHGRGNSVRTRNTR--LAAVHAFFRFVAVSEPALFLLCQ 108 Query: 112 NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171 IL + + + + L E +A LV WI R+ +L + GLR S Sbjct: 109 RILAIPSKRCEHGPVEFLTESEAAALVG-----APDVRNWIGNRDRTLLLVAVQTGLRNS 163 Query: 172 EALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLP---SVRKAILEYYDLCPFDLNLNIQL 227 E +L Q++ + + +R GKG K+R PL P +V K L Y P D Sbjct: 164 ELTALRRQDVALGTGAHVRCLGKGRKMRCTPLRPDVVAVLKQWLLYQPGEPGD------- 216 Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLRHSFATHLLSNGGDLR 281 P+F RG L+ Q+ + + L S T HTLRH+ A L+ +G DL Sbjct: 217 PVFPSSRGGHLSADALQQLVSRNAETARLSCPSLKKKSITPHTLRHTAAMSLMHHGVDLT 276 Query: 282 SIQSILGHFRLSTTQIYTNVN 302 I LGH TTQIY + + Sbjct: 277 VIALWLGHESSETTQIYLHAD 297 >gi|300786599|ref|YP_003766890.1| phage integrase family protein [Amycolatopsis mediterranei U32] gi|299796113|gb|ADJ46488.1| phage integrase family protein [Amycolatopsis mediterranei U32] Length = 326 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 10/164 (6%) Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR--IQGKGDKIRIVPLLPSVRK 208 W + R+ ++ L GLR +E +L+ ++++ LR ++GKG + R +P+ P + + Sbjct: 146 WPE-RDVLVIALGLVAGLRAAEMRALSARSLVGRAGELRLHVKGKGSRDRSIPVQPVLAE 204 Query: 209 AILEYYDLCPF---DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL----PLSTT 261 I Y + C ++ + PL G+P+ G + ++ R GL P Sbjct: 205 LIERYRESCRVRFPNVRFSPGSPLLLDRAGEPIGRGALEYLVKSCYRGAGLHDRVPAGAN 264 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 H LRH+FAT L +G I ++LGH L+T+Q Y + Sbjct: 265 LHALRHTFATRLAEDGATASEIMALLGHASLATSQNYIEATGRE 308 >gi|297572206|ref|YP_003697980.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595] gi|296932553|gb|ADH93361.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595] Length = 260 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 99/210 (47%), Gaps = 22/210 (10%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 + IK+ +L+ + T++ +L ++ ++ PR + +L ++++VL + Sbjct: 54 FTHIKALFTWLEITRRRTDNPLLGLKAPRRPKYYPRPI----SLEVIEHVL------NQR 103 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211 + + ++ L + CGLR+ E + Q+ L ++GKG K I+P V A+ Sbjct: 104 LYRKTRCMILLAFNCGLRVGEICKVRGQDYDRQAGLLTVEGKGGKRSIIP----VNSALQ 159 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 +++ P P G G + V +R RRY + +H LRH+FAT Sbjct: 160 PFFNTMPAH---GWWFPCRNG--GHVRSRSVGDTIVRTFRRY---EVHMVSHQLRHTFAT 211 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 LL+ DLR +Q ++ H + TT +YT V Sbjct: 212 ELLAADVDLRIVQLLMRHESIQTTALYTRV 241 >gi|87300841|ref|ZP_01083683.1| integron integrase [Synechococcus sp. WH 5701] gi|87284712|gb|EAQ76664.1| integron integrase [Synechococcus sp. WH 5701] Length = 278 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 87/188 (46%), Gaps = 39/188 (20%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPS----- 205 +D + + LLYG G+R+ EAL L ++ + L ++ GKG K R LLP Sbjct: 70 LDGVEALVAGLLYGSGVRLIEALRLRVHDLDFSRHELMVRDGKGGKDRRT-LLPERLGAQ 128 Query: 206 VRKAILEYYDLCPFDLNLN---IQLP--LFR--------------------------GIR 234 +R + E + DL + LP L R G + Sbjct: 129 LRGHLEEVRQVHRQDLAQGWGRVMLPHALGRKYPNAGVEWGWQWVFPQHQRWRDASSGQQ 188 Query: 235 GKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 G+ L+P + QR +R+ GL T HT RHSFATHLL G D+R+IQ +LGH + Sbjct: 189 GRHHLDPSLIQRAVRRAVLAAGLTKPATCHTFRHSFATHLLERGQDIRTIQGLLGHSDVK 248 Query: 294 TTQIYTNV 301 TT IYT V Sbjct: 249 TTMIYTQV 256 >gi|156936639|ref|YP_001440553.1| hypothetical protein ESA_pESA3p05520 [Cronobacter sakazakii ATCC BAA-894] gi|156534893|gb|ABU79717.1| hypothetical protein ESA_pESA3p05520 [Cronobacter sakazakii ATCC BAA-894] Length = 325 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 78/150 (52%), Gaps = 11/150 (7%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R++A+L ++ GCGLR SE + L +I++ LR+ GKG+K R+ + +V + + + Sbjct: 164 RDAAMLAVMLGCGLRRSEVVGLDYASILEQDQALRVLGKGNKERLAFMPDTVWQRLRHWT 223 Query: 215 DLCPFDLNLNIQLPLFRGIRG------KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 D + PLF IR + L P + + R G+ + H LR + Sbjct: 224 D----SVRGEYPGPLFTRIRAGDDVTSERLTPQAVYHILNERRMQCGID-NCAPHDLRRT 278 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 FA+ +L NG DL +++ +GH ++TTQ Y Sbjct: 279 FASMMLDNGEDLITVRDAMGHASVTTTQKY 308 >gi|209526214|ref|ZP_03274744.1| integron integrase [Arthrospira maxima CS-328] gi|209493311|gb|EDZ93636.1| integron integrase [Arthrospira maxima CS-328] Length = 277 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 93/191 (48%), Gaps = 37/191 (19%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVP---LLP-- 204 D + ++ LLYG G+R++E L L +++ D + I +GK D+I ++P +LP Sbjct: 75 DDPEALVIRLLYGTGMRLTECLRLRVKDVDFDHGQILIRNSKGKKDRITMLPRSLILPLQ 134 Query: 205 --------SVRKAILEYYDLCPFDLNLNIQLP----------LFRG-----------IRG 235 + + +L+ Y L + P +F +R Sbjct: 135 QHIARTKLAHDRELLDGYGEVELPDALARKYPNAQREWGWQYVFPAAHRSRDPRSGAVRR 194 Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 L+ QR ++ ++ + + HTLRHSFATHLL +G D+R++Q +LGH + TT Sbjct: 195 HHLSEDRIQRRMKPAKQQASITKHGSCHTLRHSFATHLLEDGYDIRTVQELLGHKDVKTT 254 Query: 296 QIYTNVNSKNG 306 +IYT+V ++ G Sbjct: 255 RIYTHVLNRGG 265 >gi|255316601|ref|ZP_05358184.1| integrase/recombinase, putative [Clostridium difficile QCD-76w55] Length = 269 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 91/290 (31%), Positives = 128/290 (44%), Gaps = 61/290 (21%) Query: 25 LEIERG---LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 LE E+ LSK T +Y+ D +QFL Y + I +A + K + + Sbjct: 8 LEFEKSIQQLSKNTKYNYKLDIKQFL---NIYGHQDIN------------KALLKKYKDE 52 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 I + S+K I S YL+ + I NM +P A + Q T +D++ Sbjct: 53 IIENYSIKTVNRKINSLNAYLRFKNI-------NMH-------VPVAKIQNQ--TFIDDM 96 Query: 142 LLHTSHETKWI--------DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L T+ E + + D R AI+ L+ G R+SE L ++I D+ + I+GK Sbjct: 97 L--TNEEVRLMLNKSIELNDLRAKAIMLGLFYTGARVSELLQFKVKSIQKDE--IMIKGK 152 Query: 194 GDKIRIVPLLPSV-RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 G K R + L+PSV A EY D D N Q LF G RG VF R L++ Sbjct: 153 GSKYRKI-LIPSVLNNAFQEYVDNERVD---NTQF-LFSGQRGVLSRSEVF----RILKK 203 Query: 253 YLGLP----LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 Y L S H RH F +L G +I+ +LGH LSTT IY Sbjct: 204 YALLANINEDSVYPHAFRHLFTKNLDKKGVSYSAIKQLLGH-ALSTTDIY 252 >gi|83816142|ref|YP_445021.1| integron integrase subfamily protein [Salinibacter ruber DSM 13855] gi|83757536|gb|ABC45649.1| integron integrase subfamily [Salinibacter ruber DSM 13855] Length = 318 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 56/162 (34%), Positives = 79/162 (48%), Gaps = 21/162 (12%) Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215 N I +LLYG GLR+SEAL L + + S L ++ D + V S+ AI E Y Sbjct: 152 NRLIAHLLYGSGLRLSEALRLRVKELDVGTSRLHVR---DGVGGV----SLPDAIAEKYP 204 Query: 216 -----------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 P L+ + P R + QR +++ + T HT Sbjct: 205 NAKTEWRWQYVFPPTTLSED---PRSGAARRHHRSDSAVQRAVKKAADATDIEKRATCHT 261 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 LRHSFATHLL +G D+R+IQ +LGH +L TT Y +V ++G Sbjct: 262 LRHSFATHLLQDGTDVRTIQRLLGHEQLRTTMQYVHVLEQSG 303 >gi|295696281|ref|YP_003589519.1| integrase family protein [Bacillus tusciae DSM 2912] gi|295696714|ref|YP_003589952.1| integrase family protein [Bacillus tusciae DSM 2912] gi|295411883|gb|ADG06375.1| integrase family protein [Bacillus tusciae DSM 2912] gi|295412316|gb|ADG06808.1| integrase family protein [Bacillus tusciae DSM 2912] Length = 293 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 76/286 (26%), Positives = 128/286 (44%), Gaps = 37/286 (12%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 RGLS T+ Y TR IFL F + + QL + R F+ +K Sbjct: 18 RGLSPNTVDVY---TRAARIFLEFCK------RPVDQLDVQDARRFLLFLICEK------ 62 Query: 89 KRSLSGIKSF---LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 KRS + + + +++L + N L + K +LP+ L+ + +++++ Sbjct: 63 KRSAATVNVYNAAVRFLFAVTLNRTFNPLQIPRQKMPKTLPQVLSRPEIASILEHC---- 118 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPL 202 H K + A+ L+YG GLR+SEA ++ Q+I D T+R+ GKG K R L Sbjct: 119 -HNLK-----HKALFALIYGSGLRVSEAAAIKTQHI--DSRTMRVFVQGGKGAKDRYTVL 170 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTT 261 + + + EY+ + + LF G + R + + + Sbjct: 171 SHTALQLLREYWKAY---RPTHPEGWLFLGTYSLAHITSAAISRAFGDALKRAQISKEVS 227 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 H+LRHSFATHLL +G L I+ +LGH + +T +Y ++ + G Sbjct: 228 IHSLRHSFATHLLEDGVSLLQIKELLGHASIRSTTVYLHLANVTSG 273 >gi|253577472|ref|ZP_04854787.1| integrase [Paenibacillus sp. oral taxon 786 str. D14] gi|251843172|gb|EES71205.1| integrase [Paenibacillus sp. oral taxon 786 str. D14] Length = 323 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 68/284 (23%), Positives = 131/284 (46%), Gaps = 24/284 (8%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR-AFISKRRTQKIGDRS 87 + LS LTL+ Y+ +Q + + E+++ + I ++ +I+ F++ Q D + Sbjct: 39 KNLSPLTLRFYQDSIQQMKVA---FQEQQVPL-NIYAITSRQIKNHFVAYLIEQGKSDNT 94 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 + + +K FLKYL + T++ + +K + + + ++Q L L Sbjct: 95 VNGRIKAVKQFLKYLFEEGWLTQNVAEELHVVKAAKLMIQTFTKEQVAAL-----LEQPD 149 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206 + R+ ++ LL+ G+RISE +L ++ + +RI +GKG + R VP + Sbjct: 150 RKTFTGYRDFTMMVLLFETGMRISELCNLKIGDLFFKEQEIRITKGKGGRARRVPFQQTS 209 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-----LSTT 261 K + Y D+ DL + LF I K ++ R +++ + G+ + + Sbjct: 210 AKVVRRYLDIRG-DLETD---ALFVNINNKQIST----RALQEKMQVYGIAACIKGVRVS 261 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 HT RH+ A + NGGD +++ ILGH L Y + S + Sbjct: 262 PHTFRHTMAKFYILNGGDPFTLRRILGHSTLDMVDYYVELFSSD 305 >gi|38637799|ref|NP_942773.1| putative integrase/recombinase [Ralstonia eutropha H16] gi|32527137|gb|AAP85887.1| putative integrase/recombinase [Ralstonia eutropha H16] Length = 412 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 83/299 (27%), Positives = 136/299 (45%), Gaps = 34/299 (11%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ---LSYTEIRAFI 75 Q +++ L R LSK T+ +Y R+FL + + +I + +R +++ + +A Sbjct: 121 QAYVEYLHEARALSKATIVNYVPFIREFL--EDCFGDGRIRLSRLRAGDVVNFVQCQAL- 177 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT---ESNILNMRNLKKSNSLPRALNEK 132 ++ + K + ++SFL+Y R T + + + N S+PR + + Sbjct: 178 ------RLHLKRAKLMTTALRSFLRYACYRGDMTLDLAAAVPVVANWSM-QSIPRGIPPE 230 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 Q L+ ++ T+ + R+ AI+ LL GLR E L +I + L ++G Sbjct: 231 QIQQLLVSINRRTA-----VGRRDYAIILLLARLGLRSGEVAFLELDDIDWNTGVLSVRG 285 Query: 193 KGDKIRIVPLLPSVRKAILEYY-DLCPFDLN----LNIQLPL--FRGIRGKPLNPGVFQR 245 K + +PL V KAI Y D P + L + P+ FRG G G R Sbjct: 286 KSGQRNGLPLPADVGKAIAAYLRDGRPQSTSRRVFLRAKAPVIGFRGASGV----GSIVR 341 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + Q R + P +T AH RH A +LS+G L I +LGH TT+IYT V+ K Sbjct: 342 HSLQ-RAGIDAP-TTGAHQFRHGLACQMLSHGASLSEIGELLGHHHPQTTKIYTKVDIK 398 >gi|221642264|ref|YP_002533351.1| integrase:recombinase [Bacillus cereus Q1] gi|229052846|ref|ZP_04195288.1| Site-specific recombinase, phage integrase [Bacillus cereus AH676] gi|229199805|ref|ZP_04326410.1| Site-specific recombinase, phage integrase [Bacillus cereus m1293] gi|221243199|gb|ACM15908.1| integrase:recombinase [Bacillus cereus Q1] gi|228583670|gb|EEK41883.1| Site-specific recombinase, phage integrase [Bacillus cereus m1293] gi|228721504|gb|EEL73006.1| Site-specific recombinase, phage integrase [Bacillus cereus AH676] Length = 322 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 61/284 (21%), Positives = 123/284 (43%), Gaps = 28/284 (9%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 G K T+ Y R F+ ++ I+ + ++ ++ +I+K +++ ++ Sbjct: 41 GFRKRTIDDYSKLFRYFM--------RELNIEKVEIITAAHVQMYINKLLNRELAPATVN 92 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 +S +KS K L ++ + ++ L+ + LN Q + +T Sbjct: 93 IRISALKSVFKRLNEQGYIKSNPAVDFVKLRTDEAPIFTLNHNQI-----KRIFRVVDKT 147 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 + R+ + L+ CGLR++E L +I D T+ + G +K R +P +K Sbjct: 148 TYAGYRDYCAMLLMLHCGLRVNEVNQLEANDIDFDNLTIMLAGAKNKNRKTRAVPMTKKV 207 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGI-------RGKPLNPGVFQRYIRQLRRYLGL--PLST 260 E L ++ F G+ GK ++ + ++ + + GL Sbjct: 208 AEELRML------IDESREYFEGVTNVFLTQEGKVIDNDLLRKRMYRYGTLAGLLKECRP 261 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + H+LRH+FAT+ L NGG + ++ I+GH ++TT Y +N + Sbjct: 262 SPHSLRHTFATNFLRNGGSVNALMRIMGHADITTTMRYVRLNDE 305 >gi|228923867|ref|ZP_04087144.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228948859|ref|ZP_04111134.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810821|gb|EEM57167.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228835666|gb|EEM81030.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 322 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 65/282 (23%), Positives = 125/282 (44%), Gaps = 24/282 (8%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 G K T+ Y T+ F F+ EK+ I T + ++ +I+K ++++ ++ Sbjct: 41 GFRKRTIDDY---TKLFHYFMRELNIEKVEIITAKH-----VQMYINKLLSRELAPATIN 92 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 +S +KS K L ++ + ++ L+ + LN Q L +T Sbjct: 93 IRISALKSVFKRLHEQGYIKSNPAVDFVKLRTDEAPIFTLNNNQI-----KRLFRVVDKT 147 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 + R+ + L+ CGLR++E L ++ D T+ + G +K R +P +K Sbjct: 148 TYAGYRDYCAMLLMLHCGLRVNEVNQLEANDLDFDNLTIMLSGAKNKNRKTRAVPMTKKI 207 Query: 210 ILEYYDLCP-----FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST--TA 262 E L F+ N+ F G ++ + ++ + + + GL + Sbjct: 208 AEELRMLIDESREYFEGTTNV----FLTQDGNSIDNDLLRKRMYRYGQLAGLSKECRPSP 263 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 H+LRH+FAT+ L NGG + ++ I+GH ++TT Y +N + Sbjct: 264 HSLRHTFATNFLRNGGSVNALMRIMGHADITTTMRYVRLNDE 305 >gi|168187085|ref|ZP_02621720.1| putative integrase/recombinase [Clostridium botulinum C str. Eklund] gi|169294988|gb|EDS77121.1| putative integrase/recombinase [Clostridium botulinum C str. Eklund] Length = 274 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 72/279 (25%), Positives = 128/279 (45%), Gaps = 27/279 (9%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 QN +E+ S T+ Y D RQF+ +L + ++ I + + + ++ Sbjct: 8 FQNYLLEQRKSIATINGYMQDIRQFVEYLTNHHKQ---INKLHNQDIEDYKNYLLYDEQL 64 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 K+ +++ R L I FL + +T + M+N SN L +K Sbjct: 65 KV--KTVNRKLVSINQFLTF-NNVAVTIRQEKVQMQNFL-SNLLTNEDVQK--------- 111 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 +++T+++ D R I+ LY G+R+SE L LT +I +Q + I+GKG K R V Sbjct: 112 MINTTYKIN--DVRARTIINTLYYTGMRVSEMLQLTIYDI--NQPRINIKGKGSKFRTVF 167 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 + + EY P + +N LF G RG +N ++++ R + L Sbjct: 168 IPHKLLNTWAEY---IP--VRINKSDKLFTGERG-AINRVTVDTILKKIARLSNVSLDKA 221 Query: 262 -AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 AH RH + +L+ N D+ ++ + GH ++TT++YT Sbjct: 222 HAHNFRHLYCKNLIKNDIDISTVADLCGHSSINTTRLYT 260 >gi|160940780|ref|ZP_02088122.1| hypothetical protein CLOBOL_05674 [Clostridium bolteae ATCC BAA-613] gi|158436300|gb|EDP14067.1| hypothetical protein CLOBOL_05674 [Clostridium bolteae ATCC BAA-613] Length = 382 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 20/206 (9%) Query: 97 SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156 SF +L KR ++ + + +K + + AL +K+ V+ + + + R+ Sbjct: 178 SFFTFLHKRGYIIKNPMATVDTIKYTAQVREALTQKE----VERMRVACGE-----NLRD 228 Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI-LEYYD 215 + +L L G R+SE + +NI Q T+ + GKG K R P+ S R + LE Y Sbjct: 229 NVVLELFLASGCRVSEVAGMRVENIDMKQKTVIVLGKGKKER--PVFFSDRLLVYLEKY- 285 Query: 216 LCPFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 L+ + P+ +R + + + +R++ + G+ H LRH+FATH Sbjct: 286 -----LDGRREGPVVISVRAPYQGIKKNAMENIVREISKKAGIEKRVFPHLLRHTFATHA 340 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYT 299 L+ G L S+ ++GH + TT+IY Sbjct: 341 LNKGMPLESLSDLMGHACIETTRIYA 366 >gi|303243822|ref|ZP_07330162.1| integrase family protein [Methanothermococcus okinawensis IH1] gi|302485758|gb|EFL48682.1| integrase family protein [Methanothermococcus okinawensis IH1] Length = 325 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 85/157 (54%), Gaps = 10/157 (6%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEY 213 RNS I+ +L+ G R+SE L++ ++ ++ T RI+ KG + RIV +A L Y Sbjct: 160 RNSLIIRMLWDTGCRVSELLNIRYKDCDFEEGTFRIRNTKGKEERIVVCSNDTLEA-LRY 218 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPG----VFQRYIRQLRRYLGLPLST--TAHTLRH 267 Y ++++ + P+F+ + GK +N VF I++L++ +P + H+LRH Sbjct: 219 Y--IQYNIDKSPDAPIFQTVDGKQINRNTITHVFSNVIKELKKEGKIPQNKRIVLHSLRH 276 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 A LL+ G L ++ +LGH + TT Y++ N + Sbjct: 277 GRAVDLLNKGVPLDVVKEVLGHKSIDTTLFYSHSNDR 313 >gi|296502316|ref|YP_003664016.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis BMB171] gi|296505552|ref|YP_003667252.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis BMB171] gi|296323368|gb|ADH06296.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis BMB171] gi|296326604|gb|ADH09532.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis BMB171] Length = 301 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 61/274 (22%), Positives = 123/274 (44%), Gaps = 15/274 (5%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 + S T+ +Y+ + F+ +L + E + I ++ I+ F+ + + Sbjct: 16 KNYSDRTVDTYKYNVGLFITYLNEHHE----VDDIEDIAPFHIKKFVQHQIGLGKKANYI 71 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 + ++SF KYL + + + ++ LK+ + + + + + ++D+ T Sbjct: 72 NTLIKSLRSFFKYLVTEEYMPMNIMSKIQLLKEDTEVIKTFTDDEVVKMIDSYDFKT--- 128 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 +++ARN I+ + G+R+SE ++L + + D + +RI+GKG K R P+ ++K Sbjct: 129 --YLNARNKVIMAMFVDTGIRMSELINLQSEWVYD--TNIRIKGKGSKWRFAPISLMLKK 184 Query: 209 AILEYYDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ--LRRYLGLPLSTTAHT 264 ++ Y + F+ F GKP+ + ++ LR + + + HT Sbjct: 185 YMIRYERIKTKYFEKKALEHDNYFLSRAGKPICTVQIENIVKNAGLRADVRKDIRCSPHT 244 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 LRH L NG DL S I GH + T+ Y Sbjct: 245 LRHYAIQANLRNGLDLYSCSKIAGHENIQVTKRY 278 >gi|325272710|ref|ZP_08139063.1| Orf28 [Pseudomonas sp. TJI-51] gi|324102156|gb|EGB99649.1| Orf28 [Pseudomonas sp. TJI-51] Length = 315 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 73/290 (25%), Positives = 132/290 (45%), Gaps = 33/290 (11%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL N++ + T ++Y D F F+ ++ R++ + A+ + Sbjct: 30 WLANID-----NPQTRRAYSIDIGDFTAFVGIVHPDQF-----REVQRAHVLAWRADLER 79 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN--MRNLKKSNS--LPRALNEKQALT 136 + + +++R L+ + S +L N ++ R +SN P AL + QA Sbjct: 80 RVLSAATIRRKLAALTSLFDHLLDSNAVAGGNPVHGVKRPPNESNEGKTP-ALGDDQAKA 138 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194 L+D L + K + R+ A+L +L GLR EA L ++ + + L++ GKG Sbjct: 139 LLDAPDLDS---VKGL--RDRALLAVLLYHGLRREEAAMLDVDDLQERRGVRHLKVHGKG 193 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-----LNPGVFQRYIRQ 249 K+R +PL P + I +Y + PLFR +RG+ L G++ I Sbjct: 194 RKVRYLPLHPVAAERIHQYLEAD----GERTTGPLFRSVRGRTPGARLLANGIYS-IIGF 248 Query: 250 LRRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + G+ ++ H LR + AT+ L + D+ +Q+ LGH +STT++Y Sbjct: 249 WAKTAGIAVAGLGVHGLRATAATNALEHEADIAKVQTWLGHSNISTTRLY 298 >gi|292491385|ref|YP_003526824.1| integron integrase [Nitrosococcus halophilus Nc4] gi|291579980|gb|ADE14437.1| integron integrase [Nitrosococcus halophilus Nc4] Length = 321 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 105/233 (45%), Gaps = 48/233 (20%) Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170 ++ N+ KK LP L+ ++ L+ + +W+ A LLYG GLR+ Sbjct: 89 GDLANVVRAKKPQRLPVVLSREEVSRLLGEL-----EGEQWLMAS------LLYGSGLRL 137 Query: 171 SEALSLTPQNIMDDQSTLRI-QGKGDKIRIV----PLLPSVRK--AILEYY---DLC--- 217 E + L ++I ++ + + +GKG K R+ PL+ +++ A ++ + DL Sbjct: 138 MECMRLRVKDIDFERQAIGVREGKGRKDRVTLLPEPLIVPLKRHLATVKTWHERDLAQGF 197 Query: 218 -----PFDLNLNIQL-------------------PLFRGIRGKPLNPGVFQRYIRQLRRY 253 P+ L P + +R Q IR+ R Sbjct: 198 GAVYLPYALERKYPQANKEWGWQYVFPAPKRSVDPRTKLVRRHHYYEKTLQAAIRKAVRR 257 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 + + HTLRHSFATHLL +G D+R++Q +LGH + TTQIYT+V + G Sbjct: 258 ARIEKPASCHTLRHSFATHLLESGYDIRTVQELLGHQDIRTTQIYTHVLKRGG 310 >gi|284037946|ref|YP_003387876.1| integrase family protein [Spirosoma linguale DSM 74] gi|283817239|gb|ADB39077.1| integrase family protein [Spirosoma linguale DSM 74] Length = 390 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/151 (33%), Positives = 77/151 (50%), Gaps = 22/151 (14%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFD 220 L+Y GLR+SEA L ++ D+ + ++ GKG K R+V L + D Sbjct: 240 LIYSTGLRLSEAAHLHLVDLDRDRRLITVRAGKGKKDRVVMLSEKL-------------D 286 Query: 221 LNLNIQLPLFRGIR--------GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 L++N L +R R +P++ Q+ R+ G+ H+LRHSFATH Sbjct: 287 LDINTYLNQYRPHRYLFEDASTREPISIRTIQQVYSNTVRFAGIVKRGGIHSLRHSFATH 346 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 LL +G D+R IQ +LGH + TT YT+V + Sbjct: 347 LLESGVDIRHIQELLGHESILTTMRYTHVTA 377 >gi|260424444|ref|YP_003212645.1| hypothetical protein Ctu_1p00690 [Cronobacter turicensis z3032] gi|260219252|emb|CBA34606.1| hypothetical protein Ctu_1p00690 [Cronobacter turicensis z3032] Length = 318 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 55/195 (28%), Positives = 93/195 (47%), Gaps = 18/195 (9%) Query: 112 NILNMRNLKKSNSLPRALNEKQALTL--VDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169 IL +R ++ S L +ALT V + + R++A+L ++ GCGLR Sbjct: 117 QILAVRAVRGSR-----LTRGRALTTEEVRALFAFCEQDKSCKGPRDAAMLAVMLGCGLR 171 Query: 170 ISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229 SE + L ++I++ LR+ GKG+K R+ + +V + + + D + PL Sbjct: 172 RSEVVGLDYESILEPDQALRVLGKGNKERLAFMPDTVWQRLRHWTDT----VRGEHPGPL 227 Query: 230 FRGIRG------KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283 F IR + L P + + R G+ H LR +FA+ +L NG DL ++ Sbjct: 228 FTRIRAGDDVTSERLTPQAVYHILTERRTQCGID-DCAPHDLRRTFASMMLDNGEDLITV 286 Query: 284 QSILGHFRLSTTQIY 298 + +GH ++TTQ Y Sbjct: 287 RDAMGHASVTTTQKY 301 >gi|317052534|ref|YP_004113650.1| integrase family protein [Desulfurispirillum indicum S5] gi|316947618|gb|ADU67094.1| integrase family protein [Desulfurispirillum indicum S5] Length = 303 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 25/165 (15%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYY 214 + Y GLR+ E + LT +I D +R+ KG+K R+VPL + + E++ Sbjct: 130 VFFFTCYSMGLRLGEGIRLTVDDI--DTGNMRVHIRDAKGNKDRLVPLPDKTLQVLREFW 187 Query: 215 DLCPFDLNLNIQLPLF------RGIRGK-----PLNPGVFQRYIRQLRRYLGLPLSTTAH 263 + + P F RG++ PL+ G Q ++ + R+LGL + + Sbjct: 188 AVH--------RHPCFLFPSRKRGLKNAHLVDLPLDRGGIQSAMQSVVRHLGLR-RISCY 238 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 +LRHS+ATH+L G DL +Q ILGH + TT YT++ + + Sbjct: 239 SLRHSYATHMLEAGVDLLELQQILGHVSILTTARYTHLTATTANN 283 >gi|254672660|emb|CBA06490.1| putative integrase/recombinase [Neisseria meningitidis alpha275] Length = 293 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 61/250 (24%), Positives = 112/250 (44%), Gaps = 9/250 (3%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+N+ + G S+ T+ +Y D + LA E + LS + A + + Sbjct: 13 YLENI-VREGKSEHTVAAYRRDLEELFALLAQMPSEDAG-GVPQDLSRRDFTAALRRLSQ 70 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + + R+L R LS + + +L +R + +++ K+ +P+AL ++ ++D Sbjct: 71 RGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQEWLNRMLDL 130 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + + R+ A+ L+YG GLR+SE L ++ D++ + + GKG K R V Sbjct: 131 PVDGGDP----LAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQV 186 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 PL +A+ Y P + LF G G L+ Q+ + Q G Sbjct: 187 PLTGKSVEALKNY---LPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHV 243 Query: 261 TAHTLRHSFA 270 + H +RHS+A Sbjct: 244 SPHMMRHSYA 253 >gi|210134881|ref|YP_002301320.1| integrase-recombinase protein [Helicobacter pylori P12] gi|210132849|gb|ACJ07840.1| integrase-recombinase protein [Helicobacter pylori P12] Length = 356 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 93/194 (47%), Gaps = 14/194 (7%) Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 N N LP LN ++ ++ + + + ARN ++ ++ G+R +EAL L Sbjct: 158 NQSAGNKLPTHLNNEELEKFLEGI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 215 Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231 ++ + T+ I+GKGDK R V L + S+ K L +L P +L LF Sbjct: 216 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLMERELYPVKNDL-----LFC 270 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290 +G L R + ++ + GL AH LRHSFAT L DL +Q LGH Sbjct: 271 NQKGGALTQAYLYRQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 330 Query: 291 RLSTTQIYTNVNSK 304 L+T++IYT+ + + Sbjct: 331 SLNTSRIYTHFDKQ 344 >gi|146301384|ref|YP_001195975.1| phage integrase family protein [Flavobacterium johnsoniae UW101] gi|146155802|gb|ABQ06656.1| phage integrase family protein [Flavobacterium johnsoniae UW101] Length = 305 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 57/156 (36%), Positives = 82/156 (52%), Gaps = 10/156 (6%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYY-D 215 A+L + YGCGLR SE SL +++ + L + QGKG+K R VP+ +V + + +Y D Sbjct: 144 ALLSIAYGCGLRRSEIASLDLKDVNLIKGMLVVRQGKGNKRREVPMSDTVLQYLTKYVRD 203 Query: 216 LCPFDL---NLNIQLPLF--RGIR--GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 P L N N + RG R G+ LN + + I Q ++ + T H LRHS Sbjct: 204 ERPERLTGRNQNEEAFFINSRGRRSTGENLNE-ILNKMIEQTGKFELVQKEITLHCLRHS 262 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 A HL N + I+S LGH +++TT IY N K Sbjct: 263 IAFHLAENNAGIDFIRSFLGHTQINTTYIYAVQNKK 298 >gi|116622416|ref|YP_824572.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116225578|gb|ABJ84287.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 332 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 78/293 (26%), Positives = 126/293 (43%), Gaps = 28/293 (9%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI- 83 L +R +S T+ SY R L F + + + L + + AF+ ++ Sbjct: 19 LMAQRKVSPHTIASYRDTFRLLLQFAQKRLRKAPSQLGLDDLDASLVGAFLEDLENRRHN 78 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD---- 139 G RS L+ I+SF +Y + S I+ ++ ++P N++Q LV Sbjct: 79 GARSRNLRLTAIRSFFRY-ASLEAPAHSGII-----QRVLAIP---NQRQRRALVGFLTR 129 Query: 140 ---NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGD 195 LL + T+W+ R+ A L GLR+SE L +++ + + +R +GKG Sbjct: 130 PEIEALLAAPNRTQWLGRRDHAFLLTAVQTGLRLSEMTGLRQEDVSLGAGAHVRCRGKGR 189 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ----RYIRQLR 251 K R PL A+L+ + + LF RG PL+ Q R++ Q R Sbjct: 190 KERCTPLAKPT-AAVLKAWIR---EQGRGDSKTLFPSTRGGPLSADGVQHLLARHVAQAR 245 Query: 252 RYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 ++ + H LRH+ A LL G D I LGH + TTQIY + + Sbjct: 246 KHCASLRKKRVSPHVLRHAAAMELLQGGVDRAVIALWLGHESVETTQIYLDAD 298 >gi|225155384|ref|ZP_03723876.1| integrase/recombinase (E2 protein) [Opitutaceae bacterium TAV2] gi|224803840|gb|EEG22071.1| integrase/recombinase (E2 protein) [Opitutaceae bacterium TAV2] Length = 341 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 65/256 (25%), Positives = 111/256 (43%), Gaps = 46/256 (17%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 +LK++L+ + F ++++ + + ++ K + P L +Q + V S Sbjct: 85 TLKQALNALVFFYEHVRDEPL---GRLGDIPRPKMAVRAPTVLTREQVKAWIGAV--EDS 139 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPS 205 H D I LLY G+RISE L+L Q+I+ + S + ++ KG+K R VPL + Sbjct: 140 H-----DQPYKLICRLLYFTGMRISEVLNLRVQDIIWEHSEILLRAAKGNKDRRVPLPCA 194 Query: 206 VRKAILE------------------------YYDLCP-----------FDLNLNIQLPLF 230 V + + ++ CP F + P Sbjct: 195 VMTDLRQQLERVRLLWQRDQFDKVPVALPDSVFNKCPRYGFGWPWFFVFAAGKHCTHPRL 254 Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290 + L+ Q R +GL T H LRH++ATHLL +G D+R++Q +LGH Sbjct: 255 GHVVRWRLHDKTLQTVTRVAAEKVGLLGVATPHRLRHAYATHLLESGVDIRTVQDMLGHA 314 Query: 291 RLSTTQIYTNVNSKNG 306 ++TT IYT+ + + Sbjct: 315 DVATTMIYTHTSVRGA 330 >gi|283954436|ref|ZP_06371956.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni 414] gi|283794053|gb|EFC32802.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni 414] Length = 354 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 79/276 (28%), Positives = 131/276 (47%), Gaps = 39/276 (14%) Query: 45 QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK 104 ++L F Y+ ++I + I E+ A I T + D S K + +F +L K Sbjct: 85 EYLNFYKLYSLKQIDEELI-----VEVLASI----TGALSDASKKNYRIAVINFFDFLDK 135 Query: 105 RKITTESNILNMRNLK--------KSNSLPRALNE---KQALTLVDNVLLHTSHETKWID 153 + E + NLK K LP ++E K+ L ++NV ++ Sbjct: 136 QNEEDEKAHIFDINLKNWAGIAGSKGVKLPEFMSEEELKKFLDAIENVDFRSN------T 189 Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVPLLPSVRKAIL 211 RN I+ ++ G+R+SEA+++ +I + D +RI+ KG+K RIV ++K ++ Sbjct: 190 IRNKLIIKIIIFTGIRVSEAINIKMGDISEENDLYIIRIRAKGNKYRIVM----IKKELI 245 Query: 212 EYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRH 267 YDL ++++N LF +G PL R + QL G+ AH LRH Sbjct: 246 --YDLLK-NVSINYMSKDALLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHMLRH 302 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 +FAT L DL +Q LGH L+T++IYT+ ++ Sbjct: 303 TFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDN 338 >gi|269137402|ref|YP_003294102.1| putative integrase [Edwardsiella tarda EIB202] gi|267983062|gb|ACY82891.1| putative integrase [Edwardsiella tarda EIB202] Length = 306 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 87/178 (48%), Gaps = 5/178 (2%) Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 S + RAL++++ L++ +H K R+ A+L L G GLR E ++L + Sbjct: 116 SEAAGRALSKEEVRLLLNAT---KTHPCKVRQNRDRALLLTLCGAGLRAGELVTLESHDY 172 Query: 182 MDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240 TL + QGKG K R V + P V KA+ + + +L ++ + G+PL Sbjct: 173 DVATRTLTVRQGKGRKKRAVVVAPPVGKALAAWIKVSADHDSLFCRIHRSGSVTGQPLTT 232 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 +RQL+ + L T H LR +F T LL G DL ++ + GH +STT +Y Sbjct: 233 AGLAGILRQLQETAQIHL-FTPHDLRRTFITRLLEQGTDLNIVRQLAGHSDISTTALY 289 >gi|126664355|ref|ZP_01735339.1| integrase [Marinobacter sp. ELB17] gi|126630681|gb|EBA01295.1| integrase [Marinobacter sp. ELB17] Length = 319 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 64/219 (29%), Positives = 93/219 (42%), Gaps = 49/219 (22%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 KK LP L ++A+ ++ L H H I L+YG GLR++EA L + Sbjct: 100 KKPRKLPVVLTHEEAMCIIGK-LRHPDH----------IIASLMYGSGLRVTEACRLRIK 148 Query: 180 NIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY--DLCPF----DLNLNIQLPLFRG 232 ++ +Q + ++ GKG K R LLP A L+ + ++C D + L Sbjct: 149 DLDFNQQVITVRDGKGAKDRTT-LLPGTLIAELKSHADNICKAWKQKDPQFQHPVSLPHA 207 Query: 233 IRGKPLNPG------------------------------VFQRYIRQLRRYLGLPLSTTA 262 + K N G QR +R + + Sbjct: 208 LSRKYSNAGHSLEWQWLFSSPSLSSDNLGNVARHHRHITSVQRSVRNAVKQACIGKPAGC 267 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 HT RHSFAT LL G D+R++Q +LGH L TTQIYT+V Sbjct: 268 HTFRHSFATELLKRGNDIRTVQDLLGHADLRTTQIYTHV 306 >gi|25986875|gb|AAN16061.1| integron integrase [Pseudomonas stutzeri] Length = 320 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 86/187 (45%), Gaps = 41/187 (21%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLP-----------SV 206 + LLYG G+R+ EAL L +++ + + I+ GKG K R+ +LP +V Sbjct: 127 VCSLLYGTGMRLMEALRLRVKDVDFSRHEILIRDGKGMKDRVT-MLPRSLVQPLRRHLAV 185 Query: 207 RKAILEY------------------YDLCPFDLNLNIQLPLFRGIRGKP---------LN 239 KAI + Y P + P G+ P L+ Sbjct: 186 VKAIHDSEREQGRGDVWLPFALARKYPKAPKEWGWQYVFPA-SGLSVDPRSGVVRRHHLD 244 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 QR ++ R + T HTLRHSFATHLL +G D+R++Q +LGH + TT IYT Sbjct: 245 EKRIQRAFKRAVRGASIVKPATPHTLRHSFATHLLESGQDIRTVQELLGHSDVKTTMIYT 304 Query: 300 NVNSKNG 306 +V ++ G Sbjct: 305 HVLNRGG 311 >gi|296126706|ref|YP_003633958.1| integrase family protein [Brachyspira murdochii DSM 12563] gi|296018522|gb|ADG71759.1| integrase family protein [Brachyspira murdochii DSM 12563] Length = 374 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 79/284 (27%), Positives = 122/284 (42%), Gaps = 29/284 (10%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE-----------IRAFISKRRT 80 SK T+Q+Y + F FL FY + Q+ L Y I +I + Sbjct: 30 SKATIQTYAHSLKNFYDFLYFYYNNR---QSKDILLYNTTVWYNKVDRKLIEDYIVYQAD 86 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 +K+ + + +K++ KYL K +KI+TE+ LK P+ + + Q L D Sbjct: 87 KKLSADIIHCRIMAVKNYFKYLLKLKKISTETFFDIFDELK----TPKIIVKNQLLIKAD 142 Query: 140 NVLLHTSHETK-----WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGK 193 L T K + D RN IL L+ G+R E + QNI +T+ I + K Sbjct: 143 KTLSITKAIAKNKNRSFTDDRNIFILLLMSNTGIRRKELACIDIQNINLSNNTITIYKTK 202 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLP-LFRGIRGKPLNPGVFQRYIRQLR 251 GDK RI+ ++ ++EY L L N Q LF G + + Sbjct: 203 GDKPRIISFSDHIKNKLIEYLKLRKEILQQKNKQHSMLFIKSNGDIFKTKTLTDIMTSIS 262 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 + + + T H+LR FAT + NG D+ I +LGH ++TT Sbjct: 263 KKTNIKV--TCHSLRRGFATDMAENGTDVYVISKMLGHQNINTT 304 >gi|237707916|ref|ZP_04538397.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229458068|gb|EEO63789.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 352 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 59/228 (25%), Positives = 107/228 (46%), Gaps = 23/228 (10%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN--EKQALTLVDNVLLHTSHET 149 LS +++FLKY+ R +T + L N+ + R + K+A+ +L ++ Sbjct: 92 LSALRAFLKYVANRDMTYMAVFLQAENIPNEKTPKRKVIGLSKKAV----KAILSVPNQR 147 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSVR 207 R+ ++ LLY +R++E L+L N + D S + + GKG K R +PLL Sbjct: 148 TATGFRDFTLMLLLYSTAIRVNELLTLKISNTVMDCSKPHMIVIGKGRKKRPLPLLSQPV 207 Query: 208 KAILEY---YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-------- 256 + + Y Y D++ I +G+ P + + L++Y + Sbjct: 208 QCLKRYLKKYHPKYNDMDALIFYSKSKGVYA----PMSAENVNKMLKKYASIAHETCEDV 263 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 PL+ AH RH+ A+H L NG ++ I +LGH + TT +Y ++ ++ Sbjct: 264 PLNLHAHQFRHAKASHWLENGMNIAQISYLLGHECIQTTMVYLDITTE 311 >gi|33322355|gb|AAQ06901.1|AF496235_1 integrase/recombinase [Lactobacillus delbrueckii subsp. lactis] Length = 106 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 49/71 (69%) Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 G+P++ + ++Q+ + GL H LRHSFAT +L+NG DLRS+Q +LGH LST Sbjct: 24 GRPISSRGIAKAVQQIFQKAGLTAGAHPHELRHSFATAMLNNGADLRSVQELLGHEDLST 83 Query: 295 TQIYTNVNSKN 305 TQIYT+V+ ++ Sbjct: 84 TQIYTHVSMQH 94 >gi|171472293|gb|ACB46849.1| integrase [Pseudomonas stutzeri] Length = 320 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 86/187 (45%), Gaps = 41/187 (21%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLP-----------SV 206 + LLYG G+R+ EAL L +++ + + I+ GKG K R+ +LP +V Sbjct: 127 VYSLLYGTGMRLMEALRLRVKDVDFSRHEILIRDGKGMKDRVT-MLPRSLVQPLRRHLAV 185 Query: 207 RKAILEY------------------YDLCPFDLNLNIQLPLFRGIRGKP---------LN 239 KAI + Y P + P G+ P L+ Sbjct: 186 VKAIHDSEREQGRGDVWLPFALARKYPKAPKEWGWQYVFPA-SGLSVDPRSGVVRRHHLD 244 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 QR ++ R + T HTLRHSFATHLL +G D+R++Q +LGH + TT IYT Sbjct: 245 EKRIQRAFKRAVRGASIVKPATPHTLRHSFATHLLESGQDIRTVQELLGHSDVKTTMIYT 304 Query: 300 NVNSKNG 306 +V ++ G Sbjct: 305 HVLNRGG 311 >gi|326204493|ref|ZP_08194350.1| integrase family protein [Clostridium papyrosolvens DSM 2782] gi|325985286|gb|EGD46125.1| integrase family protein [Clostridium papyrosolvens DSM 2782] Length = 301 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 56/224 (25%), Positives = 105/224 (46%), Gaps = 12/224 (5%) Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK-KSNSLPRALNEKQALTLVDNVLLH 144 ++ R + F +YL+ ++ L +++ K K P L ++ ++D V L Sbjct: 76 KTADRKYFCFRKFCEYLELAGFIEKNPALEVKHKKYKDTKAPNFLEWEEIYQIIDVVALF 135 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI-RIVPLL 203 + T AR++A+L +L G R SE + L ++I ++ + I + K +P+ Sbjct: 136 ETENT----ARDAAMLSVLAYLGCRRSEVIDLDWKDIDFQKNEIAIYRRKTKTYDYLPMH 191 Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTT 261 P++ A+ YY F + PLF RG L+ F++ + Y G+ T Sbjct: 192 PNLENAMRRYYAENRF----TPKGPLFLSERGNRLSVTAFKQMFDKAVLYSGIKKEFDIT 247 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 HT RHSF ++++ G + IQ GH L + Q+Y ++ +++ Sbjct: 248 PHTFRHSFISNMIREGASIAEIQEYTGHSDLGSLQVYFHMGTQH 291 >gi|299531115|ref|ZP_07044528.1| phage integrase family protein [Comamonas testosteroni S44] gi|298721072|gb|EFI62016.1| phage integrase family protein [Comamonas testosteroni S44] Length = 313 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 84/185 (45%), Gaps = 26/185 (14%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ A L LLYG GLR E L++T + ++I GKG K R+V + I +Y Sbjct: 138 RDRAALELLYGSGLRAGELLNITLDQVPASGKPMQIWGKGSKERLVVVGEHAMYWIAQY- 196 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVF--------QRYIRQLRRYLG-----LPLSTT 261 Q+ L G GK +F RY QLRR + L T Sbjct: 197 -------KTARQVILAAGGHGKRSTSKLFVSSGRYPDYRYY-QLRRMVSRYGRECGLRLT 248 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321 H LRH+FA+HL L +IQ +LGH R TT Y ++ ++ + + DQ HP Sbjct: 249 PHALRHAFASHLYQGKATLHTIQLLLGHERQETTAHYVSILHED----IRAMADQHHPRS 304 Query: 322 TQKDK 326 ++ ++ Sbjct: 305 SKYER 309 >gi|255100237|ref|ZP_05329214.1| putative tyrosine recombinase [Clostridium difficile QCD-63q42] Length = 304 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 68/289 (23%), Positives = 131/289 (45%), Gaps = 15/289 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE--IRAFIS 76 + ++ ++ ++ LS+ T+ SY D ++++ E I ++I+ + E I +++ Sbjct: 5 EGYIDYIKDKKKLSENTVASYFMDIKKYM--------EYINQKSIKLVDIVENDIISYLI 56 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 K + ++ R +S IKSF YL I + +++ K L E++ Sbjct: 57 KLEKDNVSIATIARMISSIKSFHDYLFLNHICANNPAKDIKKPKIKKENINILTEEEIER 116 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L++ L T K I R+ AI +LYG G+++SE + + ++I D + Sbjct: 117 LLNFPKLTTP---KLI--RDKAIFEVLYGTGIKVSELVEMNIEDIDLDIDYIYCNSCCKN 171 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 R++PL + + +Y + + + LF G+ + I++ + Sbjct: 172 QRVIPLCDITKLYLEKYLKEARPKMAVEGEKSLFVSSLGQRFTRQGLWKVIKKYSNLANI 231 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + LRHSFA HLL+ G ++ + ILG+ LS+ Q+Y N KN Sbjct: 232 DKNINPTMLRHSFAIHLLNEGANIAVVSKILGNVNLSSLQVYLNHIDKN 280 >gi|214027192|gb|ACJ63266.1| IntI1 integrase [Escherichia coli] Length = 337 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 77/310 (24%), Positives = 126/310 (40%), Gaps = 58/310 (18%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 33 TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 83 LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207 + LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191 Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +A + F + + P +R Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT I Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311 Query: 298 YTNVNSKNGG 307 Y +V G Sbjct: 312 YXHVLKVGGA 321 >gi|315182768|gb|ADT89681.1| site-specific recombinase IntIA [Vibrio furnissii NCTC 11218] Length = 329 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 95/226 (42%), Gaps = 49/226 (21%) Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173 L R+ KK LP L + L I A+ L+YG GLR+ E Sbjct: 91 LRFRHSKKQRKLPVVLTPTEIKKLFAA-----------IPAQTLLPYQLVYGSGLRLMET 139 Query: 174 LSLTPQNIMDDQSTLRI-QGKGDKIRIVPLL----PSVRKAILEYYDLCPFD-LNLN--- 224 + L ++I D +R+ Q KG K RIV L P +R I L D LN N Sbjct: 140 IRLRVKDIDFDYGAIRVWQSKGGKSRIVTLAKELHPLLRFQIETVKHLYTQDQLNPNYDG 199 Query: 225 IQLP------------------LFR-----------GIRGKPLNPGVFQRYIRQLRRYLG 255 +Q+P LF G L+ Q+ I + R Sbjct: 200 VQMPNRIAEKYPSASKSLEWQFLFPAKQLCRYGDEPGWYRHHLHETTLQKTIIKARFTAE 259 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + + HTLRHSFATHLL G D+R++Q LGH + TTQIYT+V Sbjct: 260 IAKPLSCHTLRHSFATHLLEAGADIRTVQEQLGHSDVKTTQIYTHV 305 >gi|319654979|ref|ZP_08009052.1| hypothetical protein HMPREF1013_05674 [Bacillus sp. 2_A_57_CT2] gi|317393333|gb|EFV74098.1| hypothetical protein HMPREF1013_05674 [Bacillus sp. 2_A_57_CT2] Length = 258 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 65/217 (29%), Positives = 111/217 (51%), Gaps = 22/217 (10%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 SL + IKS K+ ++ K + + + +++ K + +P+ L E++ LL + Sbjct: 45 SLCHRIRFIKSLFKWAQEEKYVSINPVSSIKEPKPESRIPKFLTEEEI------ELLREA 98 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPS 205 +T + A+ +Y G RI E ++L +I M +QS + + GKG K R V + + Sbjct: 99 CKTTF----EKALFEFMYSTGYRIGEVVNLDKHSINMAEQSVI-VFGKGKKEREVYI--N 151 Query: 206 VRKAI-LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ-RY-IRQLRRYLGLPLSTTA 262 R +I L+ Y + + Q LF IR P + Q RY I+Q+ + G+ Sbjct: 152 TRCSIWLKRYR----EERADDQQALFVTIRA-PHRMSIAQMRYVIKQISKRAGINKCIYP 206 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 H LRHS+AT L++NG L IQ+++GH + TT++Y Sbjct: 207 HQLRHSYATTLINNGAPLEVIQNLMGHEKSETTRVYA 243 >gi|327538850|gb|EGF25494.1| phage integrase family protein [Rhodopirellula baltica WH47] Length = 312 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 77/292 (26%), Positives = 119/292 (40%), Gaps = 34/292 (11%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 GLSK T+ Y RQ LA + + + T QL + F+ + ++ S++ Sbjct: 30 GLSKRTVHGYLRAVRQ----LADWAQTQPDHVTELQLR----KYFLHLKNERQFAYGSIR 81 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 + SGIK F KR T L L+++ +LP L Q ++D Sbjct: 82 VAFSGIKFFYTRTCKRNWET----LATMKLQQAKTLPEVLTIDQVHAIIDACR------- 130 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRK 208 R + + Y GLR+ E +L +I + + I GKG K R +PL Sbjct: 131 ---TERIALFYWTTYSMGLRLDETRNLQVGDIDGKRMMVHIHRGKGAKDRYIPLPAETLL 187 Query: 209 AILEYYD-------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 + ++ L P + + Q P+ Q+ I ++ L + Sbjct: 188 WLRRHWATHRHPRFLFPAEGRDHKQ----SSTSQTPIQTSTVQKAIGKISVKLRFQKKVS 243 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 HTLRHS+ATHLL G L+ IQ LGH L TT +Y ++ + EI Sbjct: 244 THTLRHSYATHLLEAGVSLKVIQKYLGHSSLQTTMVYLHLTETAEANAREEI 295 >gi|317010894|gb|ADU84641.1| XerCD family integrase/recombinase [Helicobacter pylori SouthAfrica7] Length = 355 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 94/194 (48%), Gaps = 14/194 (7%) Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 N N LP LN ++ ++++ + + ARN ++ ++ G+R +EAL L Sbjct: 157 NQSAGNKLPTHLNSEELEKFLESI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 214 Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231 ++ + T+ I+GKGDK R V L + S+ K L +L P +L LF Sbjct: 215 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLIERELYPVKNDL-----LFC 269 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290 +G L R + ++ + GL AH LRHSFAT L DL +Q LGH Sbjct: 270 NQKGMALTQAYLYRQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 329 Query: 291 RLSTTQIYTNVNSK 304 L+T++IYT+ + + Sbjct: 330 SLNTSRIYTHFDKQ 343 >gi|325963595|ref|YP_004241501.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans Sphe3] gi|323469682|gb|ADX73367.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans Sphe3] Length = 371 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 61/216 (28%), Positives = 102/216 (47%), Gaps = 18/216 (8%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 ++G +S L +R+ S++ L++ LP AL++ +A L+ + W Sbjct: 156 VAGERSGLLAHTRRRPAKRSSL----RLREPRRLPVALSQGEAAKLLGSF-------KSW 204 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211 R+ +I L+ CGLR +E L L ++ LR+ GK + R VPL + +++ Sbjct: 205 ---RDQSIAGLMLYCGLRSAEVLGLDVTDVDIGGGWLRVMGKDQRERRVPLDVDL-GSVI 260 Query: 212 EYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 + Y L P + + L RG+PL P + R R G+ + HTLRH+F Sbjct: 261 QVYLLTERPESDSPRLFLVAKGAHRGQPLTPAGLRTIFRYHRALTGV-AAGHPHTLRHTF 319 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 T L G DL +Q++LGH + TT Y ++ + Sbjct: 320 GTALAEAGVDLAVMQALLGHAHVDTTARYIHLAPAH 355 >gi|308182836|ref|YP_003926963.1| integrase-recombinase protein [Helicobacter pylori PeCan4] gi|308065021|gb|ADO06913.1| integrase-recombinase protein [Helicobacter pylori PeCan4] Length = 356 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 94/194 (48%), Gaps = 14/194 (7%) Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 N N LP LN ++ ++++ + + ARN ++ ++ G+R +EAL L Sbjct: 158 NQSAGNKLPTHLNNEELEKFLESI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 215 Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231 ++ + T+ I+GKGDK R V L + S+ K L +L P +L LF Sbjct: 216 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLTERELYPVKNDL-----LFC 270 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290 +G L + + ++ + GL AH LRHSFAT L DL +Q LGH Sbjct: 271 NQKGSALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 330 Query: 291 RLSTTQIYTNVNSK 304 L+T++IYT+ + + Sbjct: 331 SLNTSRIYTHFDKQ 344 >gi|153000209|ref|YP_001365890.1| phage integrase family protein [Shewanella baltica OS185] gi|151364827|gb|ABS07827.1| phage integrase family protein [Shewanella baltica OS185] Length = 287 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 60/225 (26%), Positives = 110/225 (48%), Gaps = 27/225 (12%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 +LK L+GI F +++ R T + ++ K+ + LP+ L+ + + +L H Sbjct: 65 TLKLQLNGIHFFYEHVLGRDFTVQLSLP-----KRPHKLPQLLSCQD----IAALLCHCQ 115 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS 205 + + A+L L YGCGLR+SE + +I + L++ QGKG R+V + P+ Sbjct: 116 ------NLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGAYDRLVIISPT 169 Query: 206 VRKAILEYY-DLCPFDLNLNIQLPLFRGIRGK---PLNPGVFQRYIRQLRRYLGLPLSTT 261 + + +Y+ P + LF PL+ F++ + + R G+ + Sbjct: 170 LLTLLRQYWRAYHPVEW-------LFASTYHDVVYPLHESTFRKALAKAARLAGITKPCS 222 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 H+LRH++ATH L G L +Q+ LGH + +T+ Y + + + G Sbjct: 223 PHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPELG 267 >gi|114331357|ref|YP_747579.1| integron integrase [Nitrosomonas eutropha C91] gi|114308371|gb|ABI59614.1| integron integrase [Nitrosomonas eutropha C91] Length = 329 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 91/183 (49%), Gaps = 39/183 (21%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRI-------VPLL-PSVRKAILE 212 LLYG G+R+ E + L +++ +++ + ++ GKG K R+ +P+L +R L Sbjct: 138 LLYGTGMRLMECVRLRVKDVDFERAEILVRDGKGAKDRVTMLPQSLIPVLNEHIRHRRLL 197 Query: 213 YYDLCPFDLNLNIQLP------------------LF----------RGI-RGKPLNPGVF 243 Y D D+ + LP +F G+ R ++ + Sbjct: 198 YEDDLAKDMA-AVYLPDALERKYPKAATDWIWQYIFVAKSYSVDPRSGVERRHHMDEKLL 256 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 QR +++ G+ T HTLRHSFATHLL G D+R++Q +LGH ++TT IYT+V + Sbjct: 257 QRAMKKAVLAAGVTKPATPHTLRHSFATHLLQAGYDIRTVQELLGHSDVATTMIYTHVLN 316 Query: 304 KNG 306 K G Sbjct: 317 KGG 319 >gi|227892233|ref|ZP_04010038.1| phage integrase/recombinase [Lactobacillus salivarius ATCC 11741] gi|227865955|gb|EEJ73376.1| phage integrase/recombinase [Lactobacillus salivarius ATCC 11741] Length = 322 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 64/249 (25%), Positives = 119/249 (47%), Gaps = 21/249 (8%) Query: 61 QTIRQLSYTEIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116 + I+Q++ ++R +++ KR + K+ +++R S SF +L+ I +S + + Sbjct: 81 KNIQQVTTEDLRKYLTDYQKKRNSSKVTIDNIRRIFS---SFFSWLEDEDIIIKSPVRRI 137 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 +K N++ ++++ L DN + R+ A++ LL G+R+ E + L Sbjct: 138 HKVKTPNNIKETYSDEELEKLRDNC----------TEIRDLALIDLLASTGMRVGELVRL 187 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 +I ++ + GKG+K RIV + K L+ Y L D N + + L + K Sbjct: 188 NRDDIDFEERECVVLGKGNKERIV-YFDARSKLHLKNYLLSRSDDNNALFVSLKKP--QK 244 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 ++ G + IRQL R +G+ H R + AT+ + G + +Q +LGH R+ TT Sbjct: 245 RMSIGGIENRIRQLGREIGIT-KAHPHKFRRTLATNAIDKGMPIEQLQKLLGHERIDTTL 303 Query: 297 IYTNVNSKN 305 Y V N Sbjct: 304 HYAMVKQTN 312 >gi|242310752|ref|ZP_04809907.1| integrase-recombinase protein xercd family protein [Helicobacter pullorum MIT 98-5489] gi|239523150|gb|EEQ63016.1| integrase-recombinase protein xercd family protein [Helicobacter pullorum MIT 98-5489] Length = 353 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 94/190 (49%), Gaps = 10/190 (5%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHT-SHETKWIDARNSAILYLLYGCGLRISEALSLTP 178 K LP +NE++ ++ + + H+ + ARN +L + G+R+ EAL+L Sbjct: 160 KSGQKLPSYMNEEEVQRFLNGIETYPFKHQD--LGARNRLLLKTIIYTGIRVGEALNLKI 217 Query: 179 QNIMDDQS--TLRIQGKGDKIRIVPL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235 ++IM D ++++GKG+K R+V + ++ + + P ++ + LF + Sbjct: 218 KDIMLDGEFYVIQVKGKGNKPRVVMIKAKNIHSDFGAWINSRPLEVENEL---LFCNHKA 274 Query: 236 KPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 K L R + Q+ G+ AH LRHSFAT L DL +Q LGH L T Sbjct: 275 KKLTQAYVSRIVEQVLLTNGIRKEKNGAHMLRHSFATLLYQKSQDLVLVQEALGHASLDT 334 Query: 295 TQIYTNVNSK 304 ++IYT+ + + Sbjct: 335 SRIYTHFDKQ 344 >gi|222080177|ref|YP_002540040.1| integrase/recombinase [Agrobacterium vitis S4] gi|221738822|gb|ACM39601.1| integrase/recombinase [Agrobacterium vitis S4] Length = 335 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 69/298 (23%), Positives = 134/298 (44%), Gaps = 34/298 (11%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF---ISKRR 79 +++ +RG S + ++Y R +F A + ++ + Q+ + AF I R Sbjct: 14 EHMPQQRGYSPHSCEAYAYSFRLLFVFAAGRLHTRPSLLHLEQIDADMVLAFLHHIEHDR 73 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPRALNEKQALT 136 R+L+ L+ IK+F++Y++ R I + + + + L R L + Sbjct: 74 GNGASTRNLR--LAAIKAFMRYVELRHPNALEQIAQINAIPGKRHDHKLIRHLTMDEVRA 131 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGD 195 ++D + T + R+ A+L+L + GLR+SE + LT +N+ + ++ + GKG Sbjct: 132 VLDAPDIKTR-----LGLRDRAMLHLCFAGGLRVSELVGLTLENVTLQPSPSILVFGKGR 186 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRR 252 + R +PL + + + L + + P LF +G + F+ + + + Sbjct: 187 RERSLPLWKETARDVRAW-------LAVRGKPPVTELFVNAQGMAMTRAGFEYILEKHAK 239 Query: 253 Y--------LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 +G PLS H LRHS A +L D+R + LGH + TT++Y ++ Sbjct: 240 AAAARCPTLIGRPLSP--HLLRHSCAVLMLQATRDIRKVALWLGHADIRTTEVYLRMD 295 >gi|161506594|ref|YP_001573715.1| integrase family protein [Burkholderia multivorans ATCC 17616] gi|189348885|ref|YP_001942080.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616] gi|160346832|gb|ABX19915.1| integrase family protein [Burkholderia multivorans ATCC 17616] gi|189339023|dbj|BAG48090.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616] gi|325522069|gb|EGD00741.1| tyrosine recombinase [Burkholderia sp. TJI49] Length = 770 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 72/278 (25%), Positives = 110/278 (39%), Gaps = 57/278 (20%) Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----------------MRNLKKSNSLP 126 IG ++R + F+ L +R T ILN L + S+P Sbjct: 357 IGRSRVERFDPAWRPFVGPLSERSRDTARRILNAMGEWLVAQQYLRVNPFAGLPAAPSVP 416 Query: 127 -----RALNEKQALTLVDNVLLHTS------------HETKWIDARNSAILYLLYGCGLR 169 R+L Q ++ VL TS + +AR++ +L Y GLR Sbjct: 417 IDATGRSLTRAQWQYVLQTVLRPTSAFDGGDSQLANRSANQAANARDAFLLLFAYVTGLR 476 Query: 170 ISEALSLTP--------QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221 +E + T +DD +L++ GKG + R VP+ + A+ P L Sbjct: 477 RAEIAAATTGALTRTALDGALDDAWSLKVMGKGRRARTVPMPRRLIDALRAQLRARPIPL 536 Query: 222 NLN---IQLPLFRG-IRGKPLNP--------GVFQRYIRQLRRYLGLPLS----TTAHTL 265 L PL + G+ L+P G+F R QL + + H L Sbjct: 537 TLETAPADTPLIANLVTGEALHPDVVGRLYKGIFARAADQLAATYPNAAADLRRASTHWL 596 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 RH+FA H L G D+R +Q +LGH L TT +YT ++ Sbjct: 597 RHTFANHGLDAGADIRDMQELLGHASLGTTTLYTKADA 634 >gi|51245830|ref|YP_065714.1| site-specific recombinase (XerD-like) [Desulfotalea psychrophila LSv54] gi|50876867|emb|CAG36707.1| probable site-specific recombinase (XerD-like) [Desulfotalea psychrophila LSv54] Length = 345 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 76/302 (25%), Positives = 120/302 (39%), Gaps = 65/302 (21%) Query: 49 FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT 108 FL FY + Q Q+ TE+ ++ + + S +R SFL +R + Sbjct: 54 FLNFYD----SPQEPAQMGITEVEEYLHYLQEHENASTSTQRQALNAISFLF---QRVLG 106 Query: 109 TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168 E + K+ LP L +++ L+ + ++ + LLYGCGL Sbjct: 107 IELTAIAPSRSKRHLKLPTVLTQEEVSQLLSQ-----------LRGQHLLMAQLLYGCGL 155 Query: 169 RISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL------------------------- 202 + E + L ++I+ + + + GKG R VPL Sbjct: 156 GLMECIRLRVKDIVFAEGHVFVNAGKGGYDRTVPLPRLITDQLQAQVSRVIQLHKEDIVE 215 Query: 203 ------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP----------LNPGVFQRY 246 LP +A+ Y L D+N P + I P + G+ Q+ Sbjct: 216 GYGEVYLP---QAVAFKYPLAAMDVNWQFLFPASK-ISSDPRSGKRRRHHVMESGL-QKA 270 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 I+ + T HTLRHS+ATHLL G L +Q +LGH + TT+IYT++ KN Sbjct: 271 IKTATSRTNIEKHVTCHTLRHSYATHLLEQGTHLHLLQKLLGHKDVKTTEIYTHLMKKNV 330 Query: 307 GD 308 D Sbjct: 331 HD 332 >gi|298249905|ref|ZP_06973709.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297547909|gb|EFH81776.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 369 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 69/270 (25%), Positives = 114/270 (42%), Gaps = 16/270 (5%) Query: 53 YTEEKITIQTIRQLSYTEIRAFISKRR--TQKIG----DRSLKRSLSGIKSFLKYLKKRK 106 Y +E + + ++ +I ++S R T K G RS++ + F K+L K Sbjct: 68 YMKETLNRVYLEEIEEVDIILWLSHLREATSKFGRPYSSRSIQTYYRDVVVFFKWLVAHK 127 Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH-------TSHETKWIDARNSAI 159 E+ N++ +K +L R E + L +D T E K + +R+ A Sbjct: 128 HLKENPAENLKPVKTEKALIRVFTEDE-LVRLDAACDRAPKGKSLTPDERKALSSRDRAF 186 Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219 L+LL G+R+SEA L +I D + ++GKG K R +P R+ L+ Y Sbjct: 187 LWLLLSTGIRVSEACGLLFGDIEWDMGMIYVRGKGAKERKIPFGKIARQH-LDTYIRYWR 245 Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGG 278 N +F G PL + +L++ G+ + HT RH FA + + NG Sbjct: 246 GGTTNHDEYVFLNAWGAPLRRSAAECIFTRLKKIAGIDDKRVSPHTCRHWFAVNAIKNGV 305 Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 +Q LGH L Y + ++ D Sbjct: 306 PSTVLQGWLGHETLEMINTYVRLAEQDNRD 335 >gi|241992534|gb|ACS73608.1| IntI1 [uncultured bacterium] Length = 315 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 77/304 (25%), Positives = 125/304 (41%), Gaps = 58/304 (19%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 33 TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 83 LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207 + LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 132 EHRLFAQLLYGTGVRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191 Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +A + F + + P +R Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT I Sbjct: 252 TYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311 Query: 298 YTNV 301 YT+V Sbjct: 312 YTHV 315 >gi|57242638|ref|ZP_00370575.1| integrase/recombinase (xerC) [Campylobacter upsaliensis RM3195] gi|57016567|gb|EAL53351.1| integrase/recombinase (xerC) [Campylobacter upsaliensis RM3195] Length = 354 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 76/284 (26%), Positives = 134/284 (47%), Gaps = 32/284 (11%) Query: 36 LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95 + +Y ++ +L FY +++ I + EI A I T + D S K + Sbjct: 73 VSTYFNPLKKLFDYLTFYKLH--SLKQIDEALIVEILASI----TGALSDASKKNYRIAV 126 Query: 96 KSFLKYL-KKRKITTESNILNMRNLK--------KSNSLPRALNE---KQALTLVDNVLL 143 +F +L K+ + ++++I ++ NLK + LP ++E K+ L +DN Sbjct: 127 MNFFDFLNKQNEEDSKAHIFDI-NLKNWAGISGARGTKLPEFMSEDELKKFLEAIDNA-- 183 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVP 201 + K RN I+ ++ G+R+SEAL + ++I ++ +RI KG+K R+V Sbjct: 184 ----DFKANTIRNKLIIKIIIFTGIRVSEALHIKLKDISEEDGLYHIRIHAKGNKYRLVM 239 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLST 260 + + +L+ + L+ LF +G PL R + Q+ G+ Sbjct: 240 IKKELISTLLDNVKINY----LSQDSLLFVNKKGTPLTQAYVSRIVEQILFKAGIRKQKN 295 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 AH LRH+FAT L DL +Q LGH L+T++IYT+ +S+ Sbjct: 296 GAHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDSE 339 >gi|167841613|ref|ZP_02468297.1| integrase family protein [Burkholderia thailandensis MSMB43] Length = 739 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 77/175 (44%), Gaps = 24/175 (13%) Query: 154 ARNSAILYLLYGCGLRISEALSLTP--------QNIMDDQSTLRIQGKGDKIRIVPLLPS 205 AR++ L Y GLR +E + T +DD +LR+ GKG + R VP+ Sbjct: 424 ARDAFGLLFAYATGLRRAELAAATTGALTRTALDGALDDAWSLRVLGKGRRARTVPMPRR 483 Query: 206 VRKAILEYYDLCPFDLNLN---IQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 + A+ P L L PL + G+ L+P V R + + L+TT Sbjct: 484 LIDALRAQLRTRPVPLTLETAPADTPLIAHLVTGEALHPDVVGRLFKGIFARAADQLATT 543 Query: 262 ------------AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 H LRH+FA H L G DLR +Q +LGH L+TT YT ++ Sbjct: 544 YPNAAADLRRASTHWLRHTFANHGLDAGADLRDMQELLGHASLATTTRYTKADAA 598 >gi|169826675|ref|YP_001696833.1| hypothetical protein Bsph_1093 [Lysinibacillus sphaericus C3-41] gi|168991163|gb|ACA38703.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 632 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 64/217 (29%), Positives = 95/217 (43%), Gaps = 20/217 (9%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 ++K+ L+ + SF + S I +KS S+P+ L EK+ + V + + Sbjct: 416 TIKKQLTILSSFYNFCVDEGYIHMSPIKKRWFPRKSKSIPKFL-EKEEIAKVRQLCEKRN 474 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS- 205 RN ++ LL G RISE L +I + T ++ GKG KIR V + Sbjct: 475 Q------LRNRVMVELLLTSGCRISEVNMLNKSDIDLENRTAQVLGKGKKIREVHFSETC 528 Query: 206 ---VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 + + + Y D P LF RG L Q+ + Q+ + S Sbjct: 529 AILLERLLESYIDEHP---------ALFISERGTRLGIRQMQKIVEQVGIDAKIKSSLHP 579 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 H RH+FAT LL+ G DL I LGH +L TT+IY Sbjct: 580 HRFRHTFATELLTKGADLSFIADELGHKQLQTTKIYA 616 >gi|89147373|gb|ABD62547.1| integrase [uncultured bacterium] Length = 163 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 36/74 (48%), Positives = 47/74 (63%) Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 P GIR ++P QR + R G+ T HTLRHSFATHLL +G D+R++Q +L Sbjct: 89 PRGGGIRRHHVDPRSIQRALHDALRRAGVRKPATPHTLRHSFATHLLESGYDIRTVQELL 148 Query: 288 GHFRLSTTQIYTNV 301 GH +STT IYT+V Sbjct: 149 GHKDVSTTMIYTHV 162 >gi|330504266|ref|YP_004381135.1| integron integrase [Pseudomonas mendocina NK-01] gi|328918552|gb|AEB59383.1| integron integrase [Pseudomonas mendocina NK-01] Length = 321 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 36/81 (44%), Positives = 49/81 (60%) Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285 Q P GI L+ QR +R+ + GL T H+LRHSFATHLL G D+R++Q Sbjct: 232 QDPRGHGIYRHHLHEKTIQRAVREAAQRAGLIKHATPHSLRHSFATHLLEAGQDIRTVQE 291 Query: 286 ILGHFRLSTTQIYTNVNSKNG 306 +LGH + TT IYT+V ++ G Sbjct: 292 LLGHSDVKTTMIYTHVLNRGG 312 >gi|57237704|ref|YP_178952.1| phage integrase family site specific recombinase [Campylobacter jejuni RM1221] gi|57166508|gb|AAW35287.1| site-specific recombinase, phage integrase family [Campylobacter jejuni RM1221] Length = 354 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 77/275 (28%), Positives = 129/275 (46%), Gaps = 37/275 (13%) Query: 45 QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK 104 ++L F Y+ ++I + I E+ A I T + D S K + +F +L K Sbjct: 85 EYLNFYKLYSLKQIDEELI-----VEVLASI----TGALSDASKKNYRIAVINFFDFLDK 135 Query: 105 RKITTESNILNMRNLK--------KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156 + E + NLK K LP ++E++ +D + + + K RN Sbjct: 136 QNEEDEKAHIFDINLKNWAGIAGSKGVKLPEFMSEEELKKFLDAI---ENADFKNNTIRN 192 Query: 157 SAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 I+ ++ G+R+SEA+++ +I + D +RI+ KG+K R+V ++K ++ Y Sbjct: 193 KLIIKIIIFTGIRVSEAINIKMGDISEENDLYIIRIRAKGNKYRVV----MIKKELI--Y 246 Query: 215 DLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHS 268 DL N++I LF +G PL R + QL G+ AH LRH+ Sbjct: 247 DLLK---NVSINYMSKDALLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHMLRHT 303 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 FAT L DL +Q LGH L+T++IYT+ ++ Sbjct: 304 FATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDN 338 >gi|24374071|ref|NP_718114.1| phage integrase family site specific recombinase [Shewanella oneidensis MR-1] gi|24348549|gb|AAN55558.1|AE015694_7 site-specific recombinase, phage integrase family [Shewanella oneidensis MR-1] Length = 287 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 69/280 (24%), Positives = 132/280 (47%), Gaps = 29/280 (10%) Query: 33 KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS-LKRS 91 +++L+ Y TR ++ A + Q + ++ ++ A+ ++ R+ LK Sbjct: 11 EISLRGYSARTRNAYLY-AITQLQHYANQPLDNITDEQLTAYFRYLNLERHHSRATLKLQ 69 Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 L+GI F +++ KR T + ++ K+ + LP+ L+ + + +L H Sbjct: 70 LNGIHFFYEHVLKRDFTIQLSLP-----KRPHKLPQLLSCQD----IAALLYHCQ----- 115 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI 210 + + A+L L YGCGLR+SE + +I + L++ QGKG R V L P++ + Sbjct: 116 -NLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGACDRWVILSPTLLILL 174 Query: 211 LEYYDLC-PFDLNLNIQLPLFRGIRGK---PLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 +Y+ P + LF PL+ F++ + + R + + H+LR Sbjct: 175 RQYWQAYHPVEW-------LFASTYHDVVYPLHESTFRKALAKAARLASITKPCSPHSLR 227 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 H++ATH L G L +Q+ LGH + +T+ Y + + + G Sbjct: 228 HAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPELG 267 >gi|86152145|ref|ZP_01070357.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni 260.94] gi|86153297|ref|ZP_01071501.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni HB93-13] gi|121612957|ref|YP_001000547.1| phage integrase family site specific recombinase [Campylobacter jejuni subsp. jejuni 81-176] gi|315124372|ref|YP_004066376.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85840930|gb|EAQ58180.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni 260.94] gi|85843023|gb|EAQ60234.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249540|gb|EAQ72500.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni 81-176] gi|315018094|gb|ADT66187.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 354 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 77/275 (28%), Positives = 129/275 (46%), Gaps = 37/275 (13%) Query: 45 QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK 104 ++L F Y+ ++I + I E+ A I T + D S K + +F +L K Sbjct: 85 EYLNFYKLYSLKQIDEELI-----VEVLASI----TGALSDASKKNYRIAVINFFDFLDK 135 Query: 105 RKITTESNILNMRNLK--------KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156 + E + NLK K LP ++E++ +D + + + K RN Sbjct: 136 QNEEDEKAHIFDINLKNWAGIAGSKGVKLPEFMSEEELKKFLDAI---ENADFKNNTIRN 192 Query: 157 SAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 I+ ++ G+R+SEA+++ +I + D +RI+ KG+K R+V ++K ++ Y Sbjct: 193 KLIIKIIIFTGIRVSEAINIKMGDISEENDLYIIRIRAKGNKYRVV----MIKKELI--Y 246 Query: 215 DLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHS 268 DL N++I LF +G PL R + QL G+ AH LRH+ Sbjct: 247 DLLK---NVSINYMSKDALLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHMLRHT 303 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 FAT L DL +Q LGH L+T++IYT+ ++ Sbjct: 304 FATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDN 338 >gi|317128823|ref|YP_004095105.1| integrase family protein [Bacillus cellulosilyticus DSM 2522] gi|315473771|gb|ADU30374.1| integrase family protein [Bacillus cellulosilyticus DSM 2522] Length = 280 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 60/273 (21%), Positives = 119/273 (43%), Gaps = 32/273 (11%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 SK TL+SY + + FL E +TI ++ E +++ S + Sbjct: 20 SKKTLKSYRLELGLLIRFLGDMEAEDVTIFHLKNYLIEE---------QKRLKPSSFQHR 70 Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK--QALTLVDNVLLHTSHET 149 I+SF ++ + + +++ + ++ K +P+ +NE+ + L + L Sbjct: 71 CKFIRSFFRWAHEYDLLSKNPAIKVKMPKDHYRIPKPVNEETLELLRIASKSPL------ 124 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 ++ +Y G+R+ E +L ++ ++ + GKGDK R V Sbjct: 125 ------EGLLVEFMYSAGVRVGEVYNLNKKDFNFTNRSVYVFGKGDKEREVYFSKRAEIW 178 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKP---LNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 I Y+D + + F + KP ++ + + ++L R + + H LR Sbjct: 179 IQRYFD------SRQDEEECFICSKNKPYRRMSIDQIRWHFKKLARKAEVDENVYPHRLR 232 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 HS+A+HL++ G L ++ +LGH R TT++YT Sbjct: 233 HSYASHLINRGASLEMVRDMLGHKRTETTRVYT 265 >gi|209516758|ref|ZP_03265610.1| integrase family protein [Burkholderia sp. H160] gi|209502875|gb|EEA02879.1| integrase family protein [Burkholderia sp. H160] Length = 336 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 74/300 (24%), Positives = 135/300 (45%), Gaps = 33/300 (11%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRT 80 L+ L ER LS+ T +SY R L FL + TI +S ++AF++ +T Sbjct: 16 LEYLIKERNLSRNTQKSYRDTFRLLLPFLVRQARKSADRLTIDDVSDQRVKAFLADIEQT 75 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD- 139 + G + + L+ ++S ++ +++ +++ + LP + +T ++ Sbjct: 76 RHCGVVTRNQRLAALRSLANFIG------QNSPEHLQWCGQIRVLPFKKAPRSTITYLEK 129 Query: 140 ---NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM------DDQSTLRI 190 + LL + R+ A+L LY G R EA +T ++ D S++ I Sbjct: 130 PEMDELLAAAQGPSAQQRRDHALLLFLYNTGARADEAAQVTIADLHVALVPKRDLSSVTI 189 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN----PGVFQRY 246 +GKG+K+R PL + ++ P +F R P+ + +RY Sbjct: 190 RGKGNKLRQCPLW------LQTIAEIVPLIDGRGSTEHVFLNRRAVPITRFGIHTLVERY 243 Query: 247 IRQLRRYLGLPLST----TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 ++ + + +P T + HTLRH+ THLL G D+ +I++ LGH + TT IY + Sbjct: 244 VQ--KAAVKVPSLTLKRVSPHTLRHTAGTHLLRAGVDINTIRAWLGHVSIDTTNIYAETD 301 >gi|89147563|gb|ABD62641.1| integrase [uncultured bacterium] Length = 171 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 45/69 (65%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 +R + GV Q +++ R G+ + HT RHSFATHLL NG D+R++Q +LGH + Sbjct: 102 LRRHHIGEGVLQVAVKKAVRASGIAKPASCHTFRHSFATHLLENGYDIRTVQELLGHKDV 161 Query: 293 STTQIYTNV 301 STT IYT+V Sbjct: 162 STTMIYTHV 170 >gi|88800925|ref|ZP_01116478.1| Integron integrase; Phage integrase; Phage integrase N-terminal SAM-like domain [Reinekea sp. MED297] gi|88776370|gb|EAR07592.1| Integron integrase; Phage integrase; Phage integrase N-terminal SAM-like domain [Reinekea sp. MED297] Length = 325 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 39/178 (21%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPL---LPSVRKAILEY---- 213 LLYG GLR++E ++L +++ ++ I+ GKG K R+VP+ L ++++ + Sbjct: 133 LLYGSGLRVNECVTLRMKDVDLAMKSITIRNGKGLKARVVPIPERLVGPLQSVMVHRKEQ 192 Query: 214 ----------YDLCPFDLN--------------------LNIQLPLFRGIRGKPLNPGVF 243 Y P+ + LN+ R +R + Sbjct: 193 HIQDTLQGAGYVQLPWAFDRKSPNAAQSIQWQFLFSSGVLNVDKKSGRKMRWH-CSTSTL 251 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 Q+ +++ L T HTLRHSFATHLL+ G D+R+IQ ++GH L+TT IYT++ Sbjct: 252 QKAVKKAAEQAQLTKRVTCHTLRHSFATHLLTTGTDIRTIQQLMGHKDLNTTMIYTHI 309 >gi|241992601|gb|ACS73655.1| IntI1 [uncultured bacterium] Length = 315 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 76/304 (25%), Positives = 126/304 (41%), Gaps = 58/304 (19%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 33 TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 83 LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207 + LLYG G+RISE L L +++ D+ T+ + +GKG K R ++P L PS+R Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDRGTIIVREGKGSKDRALMLPESLAPSLREQ 191 Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +A + F + + P +R Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH + TT I Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVPTTMI 311 Query: 298 YTNV 301 YT+V Sbjct: 312 YTHV 315 >gi|89147538|gb|ABD62629.1| integrase [uncultured bacterium] Length = 171 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 45/69 (65%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 +R + GV Q +++ R G+ + HT RHSFATHLL NG D+R++Q +LGH + Sbjct: 102 LRRHHIGEGVLQVAVKKAVRASGIAKPASCHTFRHSFATHLLENGYDIRTVQELLGHKDV 161 Query: 293 STTQIYTNV 301 STT IYT+V Sbjct: 162 STTMIYTHV 170 >gi|241992552|gb|ACS73620.1| IntI1 [uncultured bacterium] Length = 337 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 77/310 (24%), Positives = 126/310 (40%), Gaps = 58/310 (18%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 33 TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 83 LAALLFFYGKVLCTDLPWLHEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207 + LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191 Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +A + F + + P +R Sbjct: 192 LSRARAWWLKDQAEGRSGVTLPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + FQR ++ G+ T HTLRHSFAT L +G D+R++Q +LGH +STT I Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATASLRSGYDIRTVQDLLGHSDVSTTMI 311 Query: 298 YTNVNSKNGG 307 YT+V G Sbjct: 312 YTHVLKVGGA 321 >gi|188586142|ref|YP_001917687.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350829|gb|ACB85099.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 279 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 61/274 (22%), Positives = 123/274 (44%), Gaps = 24/274 (8%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 S TL++YE R+FL+ + +++ +I F+++ + R++ Sbjct: 19 SASTLETYERYIRKFLMSWK---------NDLSEVTDDDIDDFLNEYEEKGYNSRTIHVI 69 Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 ++ + F +LK +K + +++ LP+ L+E + + L + H Sbjct: 70 IAALHDFFSHLKYKKYISVIPTVDVEIPNHEKKLPKPLSEIKIIKLKNEAKDH------- 122 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI 210 R+ AI+ +L+ G+R+SE +++ ++I D + I +GKG K R V + ++ + Sbjct: 123 --LRDRAIIEVLHWTGVRVSELINIRIEDIWWDTREIWIRKGKGLKERNVIINYICKQYL 180 Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 +EY D D+ LF R +P + + + G+ + T H RH+F Sbjct: 181 IEYLDTRSDDIPY-----LFITKRKRPFTRQGVNKLLNKYAIKAGIKENVTPHMFRHTFI 235 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 T L++ G + + + GH + + YT V K Sbjct: 236 TDLINKGAEEGVVADLAGHEDIKRLKDYTEVARK 269 >gi|167621618|ref|YP_001672126.1| integrase family protein [Caulobacter sp. K31] gi|167645971|ref|YP_001683634.1| integrase family protein [Caulobacter sp. K31] gi|167646190|ref|YP_001683853.1| integrase family protein [Caulobacter sp. K31] gi|167348401|gb|ABZ71136.1| integrase family protein [Caulobacter sp. K31] gi|167348620|gb|ABZ71355.1| integrase family protein [Caulobacter sp. K31] gi|167351741|gb|ABZ74467.1| integrase family protein [Caulobacter sp. K31] Length = 330 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 81/317 (25%), Positives = 135/317 (42%), Gaps = 32/317 (10%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 M LP ++ ++ + L ++ S T+ Y DT + L+ A K + Sbjct: 1 MSAAALPALI-------QRFFTDRLCVQMEASPHTVAGYR-DTFRLLLRYAGARCGKPPV 52 Query: 61 Q-TIRQLSYTEIRAFISKRRTQKIGD-RSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118 + T+ + + F++ T + RS L+ I+SF +Y+ S+ + Sbjct: 53 KLTVEDIDADLVADFLAHTETARGNSARSRNTRLAAIRSFFRYVAM------SDPTWLLQ 106 Query: 119 LKKSNSLPRALNEKQALTLVDN----VLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174 ++ ++P K+ +T +D LL T W R+ A+L L GLR SE + Sbjct: 107 CQRILAMPNKRYVKRTVTFLDADEMAALLAAPDRTTWAGRRDHALLLLAIQTGLRASELV 166 Query: 175 SLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233 L ++ + + + +R GKG K R PL K + + + + PLF I Sbjct: 167 GLKLGDVVLGNGAHIRCMGKGRKERATPLRRETAKLLGAW-----IGNDKDENRPLFPSI 221 Query: 234 RGKPLNPGVFQRYIRQ--LRRYLGLPL----STTAHTLRHSFATHLLSNGGDLRSIQSIL 287 RG+ L+ + +R+ L P T HTLRHS A LL +G D I L Sbjct: 222 RGERLSRDALEHLVRKHCLSASRTCPSIGTKRVTPHTLRHSTAMDLLHHGVDPAVIALWL 281 Query: 288 GHFRLSTTQIYTNVNSK 304 GH + TTQIY + + + Sbjct: 282 GHENVETTQIYIHADMR 298 >gi|205356361|ref|ZP_03223126.1| DNA recombinase [Campylobacter jejuni subsp. jejuni CG8421] gi|205345746|gb|EDZ32384.1| DNA recombinase [Campylobacter jejuni subsp. jejuni CG8421] gi|315058313|gb|ADT72642.1| Integrase-recombinase protein XERCD family [Campylobacter jejuni subsp. jejuni S3] Length = 354 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 77/275 (28%), Positives = 129/275 (46%), Gaps = 37/275 (13%) Query: 45 QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK 104 ++L F Y+ ++I + I E+ A I T + D S K + +F +L K Sbjct: 85 EYLNFYKLYSLKQIDEELI-----VEVLASI----TGALSDASKKNYRIAVINFFDFLDK 135 Query: 105 RKITTESNILNMRNLK--------KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156 + E + NLK K LP ++E++ +D + + + K RN Sbjct: 136 QNEEDEKAHIFDINLKNWAGIAGSKGVKLPEFMSEEELKKFLDAI---ENADFKNNTIRN 192 Query: 157 SAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 I+ ++ G+R+SEA+++ +I + D +RI+ KG+K R+V ++K ++ Y Sbjct: 193 KLIIKIIIFTGIRVSEAINIKMGDISEENDLYIIRIRAKGNKYRVV----MIKKELI--Y 246 Query: 215 DLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHS 268 DL N++I LF +G PL R + QL G+ AH LRH+ Sbjct: 247 DLLK---NVSINYMSKDALLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHMLRHT 303 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 FAT L DL +Q LGH L+T++IYT+ ++ Sbjct: 304 FATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDN 338 >gi|15611684|ref|NP_223335.1| integrase-recombinase protein (XERCD family) [Helicobacter pylori J99] gi|4155169|gb|AAD06197.1| INTEGRASE-RECOMBINASE PROTEIN (XERCD FAMILY) [Helicobacter pylori J99] Length = 356 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 93/192 (48%), Gaps = 14/192 (7%) Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 N N LP LN ++ ++++ + + ARN ++ ++ G+R +EAL L Sbjct: 158 NQSAGNKLPTHLNNEELEKFLESI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 215 Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231 ++ + T+ I+GKGDK R V L + S+ K L +L P +L LF Sbjct: 216 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLTERELYPVKNDL-----LFC 270 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290 +G L + + ++ + GL AH LRHSFAT L DL +Q LGH Sbjct: 271 NQKGSALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 330 Query: 291 RLSTTQIYTNVN 302 L+T++IYT+ + Sbjct: 331 SLNTSRIYTHFD 342 >gi|119774492|ref|YP_927232.1| phage integrase family site specific recombinase [Shewanella amazonensis SB2B] gi|119766992|gb|ABL99562.1| site-specific recombinase, phage integrase family [Shewanella amazonensis SB2B] Length = 318 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 72/281 (25%), Positives = 114/281 (40%), Gaps = 74/281 (26%) Query: 69 TEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127 EI AF++ ++ + + K +L+ L YL ++ + E L K SLP Sbjct: 49 AEITAFLTYLAVERHVAANTQKVALNA----LIYLYQKFLQIELGELPFSLATKQRSLPI 104 Query: 128 ALNEKQA---LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--- 181 + + + L + V LH ++ +LYG GLR++E L L Q++ Sbjct: 105 VVTQTEVAHILAKLSGVHLH--------------VIQMLYGSGLRVTECLRLRVQDVDLE 150 Query: 182 --------------------------MDDQ--STLRIQGKGDKIRIVPLLPSVRKA---- 209 + DQ +L IQ K ++ I P +P+ Sbjct: 151 RLSVTVHDGKGNKDRQTLLSRSCLNWLPDQIEHSLNIQQKDNQRGIGPSMPTALSVKYPN 210 Query: 210 ---------ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 + LCP P+ I L+ ++ +R R+ G+ Sbjct: 211 AFREPGWMYLFPSSGLCPH--------PITGEICRHHLHDSAIRKALRIAVRHAGVRKKV 262 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 HT RHSFATHLL G D+R++Q +LGH + TTQIYT+V Sbjct: 263 NCHTFRHSFATHLLQAGYDIRTVQELLGHNDVKTTQIYTHV 303 >gi|312136007|ref|YP_004003345.1| integrase family protein [Caldicellulosiruptor owensensis OL] gi|311776058|gb|ADQ05545.1| integrase family protein [Caldicellulosiruptor owensensis OL] Length = 291 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 76/287 (26%), Positives = 130/287 (45%), Gaps = 28/287 (9%) Query: 20 NWLQNLE---IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 +WL+ E + G S+ T+ SY D +FL + K + + Q E R ++ Sbjct: 2 DWLKKFEEDLKQTGKSQNTVASYCADINEFLQWFEETYANKFDGRILEQ-DAREYRNYLL 60 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 QK S+ R ++ +K+F ++L + TE NI + + + ++ K+ Sbjct: 61 NVVKQKPS--SINRKMASLKNFNQFLIQVGTGTEVNICGISVADIHDREIKTISRKELNR 118 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-------DDQSTLR 189 L V + R+ A++ LL G+R+SE +SLT Q+I + S + Sbjct: 119 LKRAVYASG-------NKRDIALIELLINTGVRVSELVSLTVQDIHLTERNGSQNYSYIA 171 Query: 190 IQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 ++ GKG+K R +PL V++A+ EY + +F RG PL + I+ Sbjct: 172 VRNGKGNKYREIPLNSQVKRALEEYLSTRSSSSD-----KIFISQRG-PLRRESVDKIIK 225 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 + R G+ +AH LRH+F T L++ L I + GH + TT Sbjct: 226 KYCRLAGIE-EISAHVLRHTFCTRLVAENVPLPIISKLAGHLSVQTT 271 >gi|12642604|gb|AAK00305.1|AF314190_1 integrase IntI7 [uncultured bacterium PG11] Length = 303 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 96/226 (42%), Gaps = 48/226 (21%) Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172 I ++ ++ LP A + N +L +T W+ A LLYG GLR+ E Sbjct: 89 ITDVARAQRPKRLPVAFTRAEV-----NAVLARLRDTTWLMAS------LLYGSGLRLME 137 Query: 173 ALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAI---------LEYYDL------ 216 + L +++ + + GKG K R+ L V +++ L D+ Sbjct: 138 CVRLRVKDVDFGNHQIIVRDGKGAKDRVTMLPAPVEESLKRHLTRVKALHEQDVRDGFGG 197 Query: 217 --CPFDLNLNIQ-----------LPLFRGIR----GKP----LNPGVFQRYIRQLRRYLG 255 PF L + P R R G+ + V QR ++ R G Sbjct: 198 VYLPFALERKYKHAEREWMWQYVFPASRRSRDPRSGREQRHHVAETVLQRAVKAAVRQAG 257 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + + HT RHSFATHLL G D+R+IQ ++GH L TT IYT+V Sbjct: 258 IEKPGSCHTFRHSFATHLLGAGYDIRTIQELMGHSDLHTTMIYTHV 303 >gi|90577779|ref|ZP_01233590.1| integrase/recombinase [Vibrio angustum S14] gi|90440865|gb|EAS66045.1| integrase/recombinase [Vibrio angustum S14] Length = 480 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 80/311 (25%), Positives = 139/311 (44%), Gaps = 43/311 (13%) Query: 7 PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLI--FLAFYTEEKITIQTIR 64 P+ SFEL K+ S++ L+++ C F I + + +I I Sbjct: 179 PQHYSFELSKQ--------------SEVMLEAFSC----FCIRSCVERFDWSRILYAPIL 220 Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLK--K 121 Q + +++F+S R +I DR + + + L+ L+ + + ++++ L+ K Sbjct: 221 Q---STMQSFLSDRIDNQISDRKKAYAPATADNLLRMLRGVAQHAWLAELISVETLERIK 277 Query: 122 SNSLPRALNEKQALTLVDNVLLHTS-----HETKWIDARNSAILYLLYGCGLRISEALSL 176 + LPR + L N L H S + K R++AI +L+Y GLR +E +++ Sbjct: 278 AIKLPRGSRQSSGRYLSYNELDHISAITLIQKNKTKALRDNAIFWLMYEAGLRRAEVVNI 337 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLL--PSVRKAILEYYDLCPFDLNLNIQLPL----- 229 +I D+ LR+ GKG+K R VP + A+ ++ L N N LP Sbjct: 338 NTYDIDMDRCQLRVVGKGNKERYVPFSRNSDLYNAMEKW--LAIRQQNFNPNLPALFCTI 395 Query: 230 --FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 ++ + L ++L LG + H RHS AT+LL +G DL + + Sbjct: 396 NRYQTLTYMRLTTQTLNDLCKKL-NMLGFSRVVSPHDFRHSVATNLLRSGYDLLLVSKFM 454 Query: 288 GHFRLSTTQIY 298 GH ++TTQ Y Sbjct: 455 GHSSITTTQRY 465 >gi|317009310|gb|ADU79890.1| XerCD family integrase/recombinase [Helicobacter pylori India7] Length = 355 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 93/194 (47%), Gaps = 14/194 (7%) Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 N N LP LN ++ ++ + + + ARN ++ ++ G+R +EAL L Sbjct: 157 NQSAGNKLPTHLNNEELEKFLEGI--DKIEMSAKVCARNRLLIKIIVFTGMRSNEALQLK 214 Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231 ++ + T+ I+GKGDK R V L + S+ K L +L P +L LF Sbjct: 215 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLIERELYPVKNDL-----LFC 269 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290 +G L R + ++ + GL AH LRHSFAT L DL +Q LGH Sbjct: 270 NQKGSALTQAYLYRQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 329 Query: 291 RLSTTQIYTNVNSK 304 L+T++IYT+ + + Sbjct: 330 SLNTSRIYTHFDKE 343 >gi|302023570|ref|ZP_07248781.1| hypothetical protein Ssui0_02736 [Streptococcus suis 05HAS68] Length = 202 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 81/159 (50%), Gaps = 5/159 (3%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 RN ++ LL GLRISE +L NI + T++I KG K+R++ + ++LE Y Sbjct: 29 RNLLLISLLLSTGLRISELCNLKLDNINLENRTIQILEKGKKVRLLYIGNDETLSLLEDY 88 Query: 215 DLCPFDLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 + + LF ++ L + ++ + L L T H RHSFAT L Sbjct: 89 ----IAHHCSHSSYLFTSVKNDDHLKEQSVRLSLKNISHSLQLKKHITPHMFRHSFATML 144 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 L NG D+R IQ +LGH ++ TQIYT+V+ + + E Sbjct: 145 LDNGVDIRQIQHLLGHSNINVTQIYTHVSQSKQVEILSE 183 >gi|217962623|ref|YP_002341195.1| site-specific recombinase, phage integrase family [Bacillus cereus AH187] gi|229142474|ref|ZP_04270973.1| Site-specific recombinase, phage integrase [Bacillus cereus BDRD-ST26] gi|217067985|gb|ACJ82235.1| site-specific recombinase, phage integrase family [Bacillus cereus AH187] gi|228640987|gb|EEK97319.1| Site-specific recombinase, phage integrase [Bacillus cereus BDRD-ST26] Length = 322 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 69/312 (22%), Positives = 131/312 (41%), Gaps = 34/312 (10%) Query: 8 EIVSFELLKERQNWLQNLEIE------RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61 E+V F + E N + I G K T+ Y R F+ ++ I+ Sbjct: 13 EVVDFIGIAEELNTEAAITIATQAFRAEGFRKRTIDDYSKLFRYFM--------RELNIE 64 Query: 62 TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121 + ++ ++ +I+K +++ ++ +S +KS K L ++ + ++ L+ Sbjct: 65 KVEIITVAHVQMYINKLLNRELAPTTVNIRISALKSVFKRLHEQGYIKSNPAVDFVKLRT 124 Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 + LN Q L +T + R+ + L+ CGLR++E L +I Sbjct: 125 DEAPIFTLNNNQI-----KRLFRVVDKTTYAGYRDYCTMLLMLHCGLRVNEVNQLEVNDI 179 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-------R 234 D T+ + G +K R +P +K E L ++ F GI Sbjct: 180 DFDNFTIMLAGAKNKNRKTRAVPMTKKVAEELRML------IDESREYFGGITNVFLTQE 233 Query: 235 GKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 GK ++ + ++ + + GL + H+LRH+FAT L NGG + ++ I+GH + Sbjct: 234 GKVIDNDLLRKRMYRYGTLAGLLKECRPSPHSLRHTFATSFLRNGGSVNALMRIMGHADI 293 Query: 293 STTQIYTNVNSK 304 +TT Y +N + Sbjct: 294 TTTMRYVRLNDE 305 >gi|163855345|ref|YP_001629643.1| integrase/recombinase [Bordetella petrii DSM 12804] gi|163855611|ref|YP_001629909.1| integrase/recombinase [Bordetella petrii DSM 12804] gi|163855758|ref|YP_001630056.1| integrase/recombinase [Bordetella petrii DSM 12804] gi|163259073|emb|CAP41372.1| integrase/recombinase [Bordetella petrii] gi|163259339|emb|CAP41639.1| integrase/recombinase [Bordetella petrii] gi|163259486|emb|CAP41786.1| integrase/recombinase [Bordetella petrii] Length = 331 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 56/188 (29%), Positives = 86/188 (45%), Gaps = 44/188 (23%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYY--- 214 ++ +LYGCGLRISE ++L +++ +Q L + GK D R+VP+ ++ EY Sbjct: 144 MIKILYGCGLRISEVVALQVRDVDLEQGVLHVRHGKNDHERLVPMSSTLTDVCREYAAQA 203 Query: 215 -----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-----STTAHT 264 DL PF N + +P +PG F R RQ+ +G+P H Sbjct: 204 LTGANDLAPFFFNR----------KREPCSPGDFGRRFRQMLWEVGIPYYGKDRGPRLHD 253 Query: 265 LRHSFATHLLS----NGGDLRS----IQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 LRH+F H L+ DL + + + LGH L++T Y + + E+Y Sbjct: 254 LRHTFVCHRLNRWAKENADLNTLLPVLSAYLGHANLTSTYYYLRLTA--------EVY-- 303 Query: 317 THPSITQK 324 P IT K Sbjct: 304 --PDITSK 309 >gi|24373596|ref|NP_717639.1| phage integrase family site specific recombinase [Shewanella oneidensis MR-1] gi|24347924|gb|AAN55083.1|AE015645_9 site-specific recombinase, phage integrase family [Shewanella oneidensis MR-1] Length = 287 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 69/280 (24%), Positives = 132/280 (47%), Gaps = 29/280 (10%) Query: 33 KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS-LKRS 91 +++L+ Y TR ++ A + Q + ++ ++ A+ ++ R+ LK Sbjct: 11 EISLRGYSARTRNAYLY-AITQLQHYANQPLDNITDEQLTAYFRYLNLERHHSRATLKLQ 69 Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 L+GI F +++ KR T + ++ K+ + LP+ L+ + + +L H Sbjct: 70 LNGIHFFYEHVLKRDFTIQLSLP-----KRPHKLPQLLSCQD----IAALLYHCQ----- 115 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI 210 + + A+L L YGCGLR+SE + +I + L++ QGKG R V L P++ + Sbjct: 116 -NLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGACDRWVILSPTLLILL 174 Query: 211 LEYYDLC-PFDLNLNIQLPLFRGIRGK---PLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 +Y+ P + LF PL+ F++ + + R + + H+LR Sbjct: 175 RQYWQAYHPVEW-------LFASTYHDVVYPLHESTFRKALAKAARLASITKPCSPHSLR 227 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 H++ATH L G L +Q+ LGH + +T+ Y + + + G Sbjct: 228 HAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPELG 267 >gi|89147426|gb|ABD62573.1| integrase [uncultured bacterium] Length = 163 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 33/64 (51%), Positives = 43/64 (67%) Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 ++P QR +R R G+ T HTLRHSFATHLL G D+R++Q +LGH +STT I Sbjct: 99 VDPRAVQRALRDALRCAGIAKHATPHTLRHSFATHLLDAGYDIRTVQELLGHKDVSTTMI 158 Query: 298 YTNV 301 YT+V Sbjct: 159 YTHV 162 >gi|108563083|ref|YP_627399.1| integrase-recombinase protein [Helicobacter pylori HPAG1] gi|107836856|gb|ABF84725.1| integrase-recombinase protein [Helicobacter pylori HPAG1] Length = 356 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 14/194 (7%) Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 N N LP LN ++ ++ + + + ARN ++ ++ G+R +EAL L Sbjct: 158 NQSAGNKLPTHLNNEELEKFLEGI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 215 Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231 ++ + T+ I+GKGDK R V L + S+ K L +L P +L LF Sbjct: 216 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLTERELYPVKNDL-----LFC 270 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290 +G L + + ++ + GL AH LRHSFAT L DL +Q LGH Sbjct: 271 NQKGSALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 330 Query: 291 RLSTTQIYTNVNSK 304 L+T++IYT+ + + Sbjct: 331 SLNTSRIYTHFDKQ 344 >gi|146300425|ref|YP_001195016.1| phage integrase family protein [Flavobacterium johnsoniae UW101] gi|146154843|gb|ABQ05697.1| phage integrase family protein [Flavobacterium johnsoniae UW101] Length = 305 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 99/208 (47%), Gaps = 20/208 (9%) Query: 111 SNILNMRNLKKSNSLPRALNE----KQALTL--VDNVLLHTSHETKWIDARNSAILYLLY 164 SN+L R+++ + +P E + AL++ + N+ H + + A+L + Y Sbjct: 97 SNLLENRHIENAYYIPSYSEENGKARNALSVEEIRNIYQHCESDLQ------RALLSVAY 150 Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223 GCGLR SE +L +++M + L ++ GKG K R VP+ V + + +Y ++ + Sbjct: 151 GCGLRRSEITALNVRDVMLSKGMLIVRDGKGSKRREVPMSDIVVEYLGKYITEERYEKLI 210 Query: 224 N---IQLPLFRGIRGKPLNP----GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 + +Q F GK +N ++ I Q Y + T H LRHS A HL+ Sbjct: 211 SENKVQDAFFIHDSGKRMNGEYLNNTLKKMIEQTNDYKLIQKEITLHCLRHSIANHLMEK 270 Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + I+ LGH ++TT IY N K Sbjct: 271 NAGIDFIRGFLGHSGINTTYIYAVRNKK 298 >gi|225871676|ref|YP_002753034.1| integrase/recombinase, phage integrase family [Bacillus cereus 03BB102] gi|225785556|gb|ACO25774.1| integrase/recombinase, phage integrase family [Bacillus cereus 03BB102] Length = 361 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 84/332 (25%), Positives = 136/332 (40%), Gaps = 45/332 (13%) Query: 16 KERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFL-----AFYTEEKIT------IQT 62 K + W ++ E++ LS TL +Y + +FL +L A + +T I T Sbjct: 17 KSKMPWYIIEYTEMKTALSPATLYAYITEFEKFLKWLLSNRLAVENGKVVTNICDVPITT 76 Query: 63 IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122 + L E R F + + I R++ R+ S +KS KYL + + RN+ + Sbjct: 77 LENLPLNEARTFQRYLQGEGIETRAINRTFSALKSLFKYLAQNTENEQGENYISRNVMEK 136 Query: 123 NSLPRA---------------LNEKQALTLVDNVLLHTSHETKWID-----------ARN 156 L + NEK + + + K I R+ Sbjct: 137 IELHKEKVDAAARADDVANMIFNEKDDVAFLQFLANDYGEMLKDISPKKYSFFQRDKERD 196 Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 AI+ L+ G GLR+SE SLT +I Q +++ KG+K V S + EY + Sbjct: 197 IAIMSLILGTGLRVSEVASLTISSINFRQGKVKVTRKGNKRSSVLATRSCLDDVQEYIKV 256 Query: 217 CPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQL--RRYLGLPLSTTAHTLRHSFATH 272 P N + L +GK V R I++L + + H LRH++AT+ Sbjct: 257 RPSKYNCPQDEDLLFVTNYKGKYTQLTV--RAIQKLCDKYSSAFDEKRSPHKLRHTYATN 314 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 DL ++ LGH + T IYTN+N++ Sbjct: 315 HYKENKDLVLLRDQLGHTSVEVTSIYTNINNE 346 >gi|257459633|ref|ZP_05624742.1| hydrogenase expression/formation protein [Campylobacter gracilis RM3268] gi|257443058|gb|EEV18192.1| hydrogenase expression/formation protein [Campylobacter gracilis RM3268] Length = 186 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 83/160 (51%), Gaps = 9/160 (5%) Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPS 205 E + RN I+ ++ G+R+ EA++L ++I D +RI+GKG+K RIV Sbjct: 17 EFRSFAHRNRLIVKIIVYTGIRVGEAINLKRKDIAPEGDLFVIRIRGKGNKYRIVM---- 72 Query: 206 VRKAILEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAH 263 +++ ++E + L + N N + LF G PL + ++ G+ AH Sbjct: 73 IKRHLIEEH-LNALETNFANKEGYLFVTKNGAPLTQAYVSGIVEKILMSAGIRKEKNGAH 131 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 LRH+FAT L DL +Q LGH L+T++IYT+ +S Sbjct: 132 MLRHTFATMLYKKQKDLVLVQEALGHASLNTSRIYTHFDS 171 >gi|317014094|gb|ADU81530.1| phage integrase family site specific recombinase [Helicobacter pylori Gambia94/24] Length = 356 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 93/192 (48%), Gaps = 14/192 (7%) Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 N N LP LN ++ ++++ + + ARN ++ ++ G+R +EAL L Sbjct: 158 NQSAGNKLPTHLNNEELEKFLESI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 215 Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231 ++ + T+ I+GKGDK R V L + S+ K L +L P +L LF Sbjct: 216 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLTERELYPVKNDL-----LFC 270 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290 +G L + + ++ + GL AH LRHSFAT L DL +Q LGH Sbjct: 271 NQKGMALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 330 Query: 291 RLSTTQIYTNVN 302 L+T++IYT+ + Sbjct: 331 SLNTSRIYTHFD 342 >gi|325107529|ref|YP_004268597.1| integrase family protein [Planctomyces brasiliensis DSM 5305] gi|324967797|gb|ADY58575.1| integrase family protein [Planctomyces brasiliensis DSM 5305] Length = 310 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 8/146 (5%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--GKGDKIRIVPLLPSVRKAILE 212 RN A+L LY G R+SE SL ++ + S +I GKG K R V + SV +A+++ Sbjct: 156 RNRALLLTLYAGGFRVSELCSLKWCHLQERDSAGQITVFGKGGKTRTVLMPQSVWEAVMK 215 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 D + + + P+FR + L+ R +++ G+ + + H RH+ A+H Sbjct: 216 LRD------SDSSEAPVFRSRKNGHLDESAVWRIVKKAAERAGIDKNVSCHWFRHAHASH 269 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIY 298 L + +Q+ LGH +STT Y Sbjct: 270 ALDRNCPIHLVQATLGHASISTTGRY 295 >gi|300871067|ref|YP_003785939.1| bacteriophage-associated integrase XerDC family protein [Brachyspira pilosicoli 95/1000] gi|300688767|gb|ADK31438.1| bacteriophage-associated: putative integrase XerDC family protein [Brachyspira pilosicoli 95/1000] Length = 392 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 84/320 (26%), Positives = 144/320 (45%), Gaps = 36/320 (11%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE----------IRAFISKRRTQ 81 SK T+Q Y ++F FL FY + + + T Q YT I +I+ + + Sbjct: 35 SKATIQIYSSCIKRFYDFLFFYYDNRQSENT--QSYYTTVLYNKVDRKCIEDYIAYQVNK 92 Query: 82 KIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 K+ + + +K++ KYL K +KI+TE+ +LK P+ + +KQ L D Sbjct: 93 KVSADFIHCMIMAVKNYFKYLLKLKKISTETFFDIFDDLK----TPKIIVKKQLLIKADK 148 Query: 141 VLLHT---SHETK-----WIDARNSAILYLLYGCGLRISE-ALSLTPQNIMDDQSTLRIQ 191 L T + ++K +++ RN +L L+ G+R E A M++ + + Sbjct: 149 TLSITKAIAEKSKSPNLFFLEKRNIFMLLLMSNTGIRRKELACIDITNINMNNNTITIYK 208 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQ 249 KGDK RI+ S++ ++EY L L + LF +PLN + Sbjct: 209 TKGDKPRIISFSDSIKSKLIEYLKLREERLTRKNKKHNMLFIKKNSEPLNINTISTIMNI 268 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGD 308 + + + + T H+LR FAT + +G D+ I +LGH ++TT Y V + + Sbjct: 269 ISKKTNIKV--TCHSLRRGFATDMAESGTDIYVISKMLGHQNINTTVSRYIYVMASMIKE 326 Query: 309 WMMEIYDQTHPSITQKDKKN 328 M Q HP ++K+N Sbjct: 327 AM-----QNHPFAKNREKQN 341 >gi|296161182|ref|ZP_06843991.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295888523|gb|EFG68332.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 316 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 75/297 (25%), Positives = 123/297 (41%), Gaps = 33/297 (11%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 W NL+ R T ++Y D R F+ F A E I ++ + A+ Sbjct: 30 EWFANLDNPR-----TRRAYRIDLRDFMSFTAITRPEDFRI-----VARAHVLAWRKVLE 79 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + + +++R L+ + S +YL E N ++ +K + NE + L D Sbjct: 80 DRALSGATIRRKLAALSSLFEYL------CEKNAVDFNPVKGAKRPKVESNEGKTPALGD 133 Query: 140 N---VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL--RIQGKG 194 + LL R+ A+L +L GLR E L ++I + L RI GKG Sbjct: 134 HQARALLDAPDPATLKGKRDRALLSVLLYHGLRREELCQLKVRDIHARRGVLHLRIHGKG 193 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP----LNPGVFQRYIRQL 250 +K+R +PL + I Y ++ PLF+ R K GV++ L Sbjct: 194 NKLRYLPLHAGSAERIHAYLEVAGH--GETPHAPLFQPARRKTHAALTADGVYKIV---L 248 Query: 251 RRYLGLPLSTTA---HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 G + H+LR + AT+ L + D+ +Q LGH ++TT+IY S+ Sbjct: 249 AYAAGAQIEVQGFGVHSLRATAATNALEHEADIAKVQEWLGHANIATTRIYDRRKSR 305 >gi|89147432|gb|ABD62576.1| integrase [uncultured bacterium] Length = 163 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 34/69 (49%), Positives = 44/69 (63%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 +R P QR R R+ G+ T HTLRHSFATHLL +G D+R++Q +LGH + Sbjct: 94 VRRHHAGPESIQRAPRDALRHAGIAKHATPHTLRHSFATHLLDDGYDIRTVQELLGHKDV 153 Query: 293 STTQIYTNV 301 STT IYT+V Sbjct: 154 STTMIYTHV 162 >gi|30265160|ref|NP_847537.1| prophage LambdaBa03, site-specific recombinase phage integrase family protein protein [Bacillus anthracis str. Ames] gi|47778394|ref|YP_022022.2| prophage lambdaba03, site-specific recombinase phage integrase family protein protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49187970|ref|YP_031223.1| prophage LambdaBa03, site-specific recombinase phage integrase family protein protein [Bacillus anthracis str. Sterne] gi|165869874|ref|ZP_02214531.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0488] gi|167635252|ref|ZP_02393567.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0442] gi|167642002|ref|ZP_02400235.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0193] gi|170687981|ref|ZP_02879194.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0465] gi|170707721|ref|ZP_02898172.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0389] gi|177652943|ref|ZP_02935270.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0174] gi|190567810|ref|ZP_03020722.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus anthracis Tsiankovskii-I] gi|227817893|ref|YP_002817902.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus anthracis str. CDC 684] gi|229603805|ref|YP_002869354.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0248] gi|254686439|ref|ZP_05150298.1| prophage LambdaBa03, site-specific recombinase, phage integrase family protein [Bacillus anthracis str. CNEVA-9066] gi|254724438|ref|ZP_05186222.1| prophage LambdaBa03, site-specific recombinase, phage integrase family protein [Bacillus anthracis str. A1055] gi|254735645|ref|ZP_05193352.1| prophage LambdaBa03, site-specific recombinase, phage integrase family protein [Bacillus anthracis str. Western North America USA6153] gi|254744268|ref|ZP_05201948.1| prophage LambdaBa03, site-specific recombinase, phage integrase family protein [Bacillus anthracis str. Kruger B] gi|254755566|ref|ZP_05207599.1| prophage LambdaBa03, site-specific recombinase, phage integrase family protein [Bacillus anthracis str. Vollum] gi|254757021|ref|ZP_05209049.1| prophage LambdaBa03, site-specific recombinase, phage integrase family protein [Bacillus anthracis str. Australia 94] gi|30259837|gb|AAP29023.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus anthracis str. Ames] gi|47552099|gb|AAT34497.2| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus anthracis str. 'Ames Ancestor'] gi|49181897|gb|AAT57273.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus anthracis str. Sterne] gi|164714197|gb|EDR19717.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0488] gi|167510052|gb|EDR85465.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0193] gi|167529295|gb|EDR92047.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0442] gi|170127278|gb|EDS96154.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0389] gi|170668090|gb|EDT18840.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0465] gi|172081718|gb|EDT66788.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0174] gi|190561226|gb|EDV15199.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus anthracis Tsiankovskii-I] gi|227006502|gb|ACP16245.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus anthracis str. CDC 684] gi|229268213|gb|ACQ49850.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0248] Length = 301 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 70/291 (24%), Positives = 136/291 (46%), Gaps = 21/291 (7%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +LLKE ++ +L+I + S T+ +Y + Q + +L + E + + ++ I+ Sbjct: 4 DLLKE---FVFDLKI-KNYSDRTIDTYNYNVGQLITYLNEHHE----VNDVEDVATFHIK 55 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNE 131 F+ + + + + ++SF KYL + + NI+N ++ LK+ + + + Sbjct: 56 KFVQHQISLGKKANYINTLIKSLRSFYKYLVVEEYVS-VNIMNKIKLLKEDVEVIKTFTD 114 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 + +++ T +++ARN I+ + G+R+SE ++L I D ++LRI+ Sbjct: 115 DEVAKMIEAYDFKT-----YLNARNKVIIAMFVDTGMRMSELINLQSSWIYD--TSLRIK 167 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIR- 248 GKG K R VP+ ++K ++ Y + F+ F GKP+ + ++ Sbjct: 168 GKGSKWRHVPMSLMLKKYMIRYERIKAKYFEKKALEHDNYFLSRAGKPICTVQIENIVKI 227 Query: 249 -QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 LR + + + HT+RH L NG DL S I GH + T+ Y Sbjct: 228 AGLRAGVREDIRCSPHTVRHYAIQSNLRNGLDLYSCSKIAGHENIQVTKRY 278 >gi|307637362|gb|ADN79812.1| integrase/recombinase [Helicobacter pylori 908] gi|325995955|gb|ADZ51360.1| integrase/recombinase [Helicobacter pylori 2018] Length = 363 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 94/194 (48%), Gaps = 14/194 (7%) Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 N N LP LN ++ ++++ + + ARN ++ ++ G+R +EAL L Sbjct: 165 NQSAGNKLPTHLNNEELEKFLESI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 222 Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231 ++ + T+ I+GKGDK R V L + S+ K L +L P +L LF Sbjct: 223 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLTERELYPVKNDL-----LFC 277 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290 +G L + + ++ + GL AH LRHSFAT L DL +Q LGH Sbjct: 278 NQKGMALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 337 Query: 291 RLSTTQIYTNVNSK 304 L+T++IYT+ + + Sbjct: 338 SLNTSRIYTHFDKE 351 >gi|315586648|gb|ADU41029.1| tyrosine recombinase XerC [Helicobacter pylori 35A] Length = 355 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 14/194 (7%) Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 N N LP LN ++ ++ + + + ARN ++ ++ G+R +EAL L Sbjct: 157 NQSAGNKLPTHLNNEELEKFLEGI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 214 Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231 ++ + T+ I+GKGDK R V L + S+ K L +L P +L LF Sbjct: 215 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLMERELYPIKNDL-----LFC 269 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290 +G L + + ++ + GL AH LRHSFAT L DL +Q LGH Sbjct: 270 NQKGSALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 329 Query: 291 RLSTTQIYTNVNSK 304 L+T++IYT+ + + Sbjct: 330 SLNTSRIYTHFDKQ 343 >gi|254785845|ref|YP_003073274.1| integron integrase [Teredinibacter turnerae T7901] gi|237686300|gb|ACR13564.1| integron integrase [Teredinibacter turnerae T7901] Length = 355 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 37/177 (20%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR-------IVPLLPSVRKAILEY 213 L+YG GLR+ EA+ L Q++ +Q + + + KG K R ++P L + R +L Sbjct: 137 LMYGSGLRVMEAVRLRLQDVDFEQQCIMVREAKGMKSRRTLLPKSLIPGLQAQRTFVLSL 196 Query: 214 Y--DLCPFDLNLNIQLPLFRGIRGKPLNPG---VFQRYIRQL--------RRYLG----- 255 + DL + + L + P PG +F +R L R ++G Sbjct: 197 HAKDLLEGFGEVYLPFALAKKYPNAPKEPGWQYLFPANMRALDPRSQVVRRHHIGEQQVQ 256 Query: 256 -----------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + + HT RH FAT+LL +G D+R+IQ +LGH LSTTQIYT+V Sbjct: 257 RQVKKAIVAAAIHKKASCHTFRHCFATNLLRSGADIRNIQELLGHKDLSTTQIYTHV 313 >gi|188527478|ref|YP_001910165.1| integrase-recombinase protein [Helicobacter pylori Shi470] gi|188143718|gb|ACD48135.1| integrase-recombinase protein [Helicobacter pylori Shi470] Length = 356 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 14/194 (7%) Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 N N LP LN ++ ++ + + + ARN ++ ++ G+R +EAL L Sbjct: 158 NQSAGNKLPTHLNNEELEKFLEGI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 215 Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231 ++ + T+ I+GKGDK R V L + S+ K L +L P +L LF Sbjct: 216 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLMERELYPVKNDL-----LFC 270 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290 +G L + + ++ + GL AH LRHSFAT L DL +Q LGH Sbjct: 271 NQKGSALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 330 Query: 291 RLSTTQIYTNVNSK 304 L+T++IYT+ + + Sbjct: 331 SLNTSRIYTHFDKQ 344 >gi|94442306|dbj|BAE93652.1| integron integrase [uncultured bacterium] Length = 238 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 81/180 (45%), Gaps = 37/180 (20%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIR--------IVPLLPSVRKA 209 + +LYG GLR+ E L +++ D+ + I+ GKG K R + PL +R Sbjct: 58 VAMVLYGSGLRLMEGCRLRVKDVDFDRHEIHIRNGKGGKDRKTMLPHRLVGPLEQHLRLV 117 Query: 210 ILEYYDLC--------------------PFDLNLNIQLPLF--------RGIRGKPLNPG 241 ++ + C P+D P R R L+ Sbjct: 118 RQQHREDCARGWGSVELPGAMDKKSPTSPWDWAWQWVFPATSAYLHEATRKRRRHHLHET 177 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 V Q+ +R+ + L + T HT RHSFATHLL +G D+R+IQ +LG + TT IYT+V Sbjct: 178 VIQKEVRRSVQALKMSKRVTCHTFRHSFATHLLESGSDIRTIQELLGRADVRTTMIYTHV 237 >gi|228918658|ref|ZP_04082085.1| Integrase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841003|gb|EEM86218.1| Integrase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 368 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 75/335 (22%), Positives = 140/335 (41%), Gaps = 49/335 (14%) Query: 13 ELLKERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFL----------AFYTE-EKIT 59 E KE+ W ++ +E + LS TL Y + FL +L TE ++T Sbjct: 17 ECHKEKMPWYIIEYIEEKTNLSPATLYGYLIEYEMFLQWLISSRLATVDGKVVTEIHEVT 76 Query: 60 IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119 I+T+ L +++ F S Q +++ R+ S +KS YL RN+ Sbjct: 77 IETLEHLPLKQVKRFKSYLERQGNKTKAVIRTFSALKSLFNYLTSNTEDDNGECYFYRNV 136 Query: 120 KKSNSLPRA-LNEKQALTLVDNVLLHTSHETKWI-------------------------D 153 + + ++ + V+ H + + K++ Sbjct: 137 MAKMEIHKEKIDAAARAKEISEVIFHNNDDIKFMRFLSNEYEQMLQENAPGKLRFFRRDK 196 Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213 R+ AIL L+ G GLR+SEA SLT +I +++ KGDK + + + EY Sbjct: 197 ERDIAILSLILGTGLRVSEAASLTISSINFRTRYIKVVRKGDKKSSILATQTALDDVQEY 256 Query: 214 YDL------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 + CP D ++ + + ++G + ++ Q+ + + + H LRH Sbjct: 257 LKVRAVRYKCPEDEDI-LFVTNYKGSYAQ-ISVNAIQKLTEKYTK--AFDEKKSPHKLRH 312 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 ++AT+ + DL + + +GH + TT +YTN++ Sbjct: 313 TYATNHYNENKDLVLLANQMGHNSMETTSLYTNID 347 >gi|226228936|ref|YP_002763042.1| integrase [Gemmatimonas aurantiaca T-27] gi|226092127|dbj|BAH40572.1| integrase [Gemmatimonas aurantiaca T-27] Length = 320 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 73/262 (27%), Positives = 114/262 (43%), Gaps = 48/262 (18%) Query: 93 SGIKSFLKYL---KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD------NVLL 143 S + +FL YL +K +T++ L + L + L Q + NVL Sbjct: 49 SAVSAFLTYLASERKVAASTQNQALAALAFLYAEVLGQPLGAVQGFLVAKVPHRLPNVLS 108 Query: 144 HTSHETKWIDARNSAILY--LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKG--DKIR 198 + + R + L LLYG GLR++E L +++ D+ LR++ GKG D++ Sbjct: 109 RAAVRRVLVHMRGTPHLMASLLYGTGLRLNECCQLRVKDLDLDRKELRVRAGKGGRDRVT 168 Query: 199 IVP---------------LLPSVRKAILEYYDLCPFDLNLNIQ-----------LPLFRG 232 +VP +L + R + Y P ++ P R Sbjct: 169 MVPESLIAPLREHLRAAKVLMARRASAGGGYVALPGAMDRKAAGASRQWGWCWVFPAARE 228 Query: 233 IRGKP--------LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284 R L+ V QR + + R G+ HT RHSFATHLL +G D+R++Q Sbjct: 229 YRDASTGERRTHHLHHTVLQRAVAEAARRAGIGQRVGCHTFRHSFATHLLEDGYDIRTVQ 288 Query: 285 SILGHFRLSTTQIYTNVNSKNG 306 +LGH +STT IYT+V ++ G Sbjct: 289 ELLGHRDVSTTMIYTHVLNRGG 310 >gi|247663502|gb|ACT09076.1| IntI1 [Vibrio cholerae] Length = 313 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 76/302 (25%), Positives = 124/302 (41%), Gaps = 58/302 (19%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 33 TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 83 LAAMLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207 + LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191 Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +A + F + + P +R Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT I Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311 Query: 298 YT 299 YT Sbjct: 312 YT 313 >gi|315932644|gb|EFV11575.1| phage integrase family protein [Campylobacter jejuni subsp. jejuni 327] Length = 354 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 76/275 (27%), Positives = 129/275 (46%), Gaps = 37/275 (13%) Query: 45 QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK 104 ++L F Y+ ++I + I E+ A I T + D S K + +F +L K Sbjct: 85 EYLNFYKLYSLKQIDEELI-----VEVLASI----TGALSDASKKNYRIAVINFFDFLDK 135 Query: 105 RKITTESNILNMRNLK--------KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156 + E + NLK K LP ++E++ +D + + + + RN Sbjct: 136 QNEEDEKAHIFDINLKNWAGIAGSKGVKLPEFMSEEELKKFLDAI---ENADFRNNTVRN 192 Query: 157 SAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 I+ ++ G+R+SEA+++ +I + D +RI+ KG+K R+V ++K ++ Y Sbjct: 193 KLIIKIIIFTGIRVSEAINIKMGDISEENDLYIIRIRAKGNKYRVVM----IKKELI--Y 246 Query: 215 DLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHS 268 DL N++I LF +G PL R + QL G+ AH LRH+ Sbjct: 247 DLLK---NVSINYMSKDALLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHMLRHT 303 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 FAT L DL +Q LGH L+T++IYT+ ++ Sbjct: 304 FATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDN 338 >gi|229176440|ref|ZP_04303876.1| Site-specific recombinase, phage integrase [Bacillus cereus MM3] gi|228607031|gb|EEK64417.1| Site-specific recombinase, phage integrase [Bacillus cereus MM3] Length = 322 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 61/284 (21%), Positives = 122/284 (42%), Gaps = 28/284 (9%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 G K T+ Y R F+ ++ I+ + ++ ++ +I+K +++ ++ Sbjct: 41 GFRKRTIDDYSKLFRYFM--------RELNIEKVEIITAAHVQMYINKLLNRELAPATVN 92 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 +S +KS K L + + ++ L+ + LN Q + +T Sbjct: 93 IRISALKSVFKRLNELGYIKSNPAVDFVKLRTDEAPIFTLNHNQI-----KRIFRVVDKT 147 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 + R+ + L+ CGLR++E L +I D T+ + G +K R +P +K Sbjct: 148 TYAGYRDYCAMLLMLHCGLRVNEVNQLEANDIDFDNLTIMLAGAKNKNRKTRAVPMTKKV 207 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGI-------RGKPLNPGVFQRYIRQLRRYLGL--PLST 260 E L ++ F G+ GK ++ + ++ + + GL Sbjct: 208 AEELRML------IDESREYFEGVTNVFLTQEGKVIDNDLLRKRMYRYGTLAGLLKECRP 261 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + H+LRH+FAT+ L NGG + ++ I+GH ++TT Y +N + Sbjct: 262 SPHSLRHTFATNFLRNGGSVNALMRIMGHADITTTMRYVRLNDE 305 >gi|88602489|ref|YP_502667.1| phage integrase [Methanospirillum hungatei JF-1] gi|88187951|gb|ABD40948.1| phage integrase [Methanospirillum hungatei JF-1] Length = 301 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 69/309 (22%), Positives = 135/309 (43%), Gaps = 43/309 (13%) Query: 29 RGLSKLTLQSYECDTRQFLIFL------------AFYTEEKITIQTIRQLSYTEIR---A 73 R S+ TL SY+ R+F F+ + +E + ++T +S ++I Sbjct: 2 RNYSQKTLSSYDLTIRRFGQFIWLTRSFRGDLSKKWEHKELLRLETGVDVSASDISRYLE 61 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 F+S R + + R LS + SF ++L +++ + + + K + L Q Sbjct: 62 FLSLDR--QYHATTYNRILSSLSSFYRFLLMQEVVETNPVPRIDRPKVKEKELKYLKHSQ 119 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 + L+ ++ D R+ ++ ++Y G+R+SE ++ +++ D +R+ GK Sbjct: 120 VMRLLQSI----------PDERDRLMIRIIYATGVRVSELCTMNVEDVDFDDQMIRVLGK 169 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 G K+R+V + I + + PLF G G ++ Q ++ Sbjct: 170 GGKVRMVFVDEVTLNEIAGL-------IGNRLSGPLFPGQGGNHISVRTVQLIFKKY--- 219 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 P T H +RHS+A+ L +LR +Q LGH + TT++Y + + D ++ Sbjct: 220 --APPGITPHKIRHSYASELYRRSRNLRVVQENLGHASIKTTEVYLHTDV----DERRQV 273 Query: 314 YDQTHPSIT 322 Y + P +T Sbjct: 274 YREFFPLVT 282 >gi|12642607|gb|AAK00307.1|AF314191_1 integrase IntI6 [uncultured bacterium PG2] Length = 305 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 61/178 (34%), Positives = 87/178 (48%), Gaps = 39/178 (21%) Query: 162 LLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRI----VPLLPSV-----RKAI 210 LLYG GLR+ E L L +++ +Q T+R GKG+K R+ PL P++ R + Sbjct: 129 LLYGSGLRLMECLRLRVKDLDFHYNQITIR-DGKGNKDRVTMLPAPLKPALELHLKRVKL 187 Query: 211 LEYYDLC--------PFDLNLNI---------QLPLFRGIR------GKP----LNPGVF 243 L DL P L+ Q G R GK ++ V Sbjct: 188 LHEEDLSGGFGEVFLPHALDRKYPNASREWAWQYVFPAGKRSIDPRSGKQRRHHVSESVL 247 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +R ++ G+ + HTLRHSFATHLL +G D+R++Q +LGH +STT IYT+V Sbjct: 248 RRVVKDAVSRAGIAKPASCHTLRHSFATHLLEDGYDIRTVQELLGHKDVSTTMIYTHV 305 >gi|310813968|gb|ADP30794.1| IntI1 [Providencia rettgeri] Length = 313 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 56/175 (32%), Positives = 81/175 (46%), Gaps = 37/175 (21%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207 LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198 Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 +A + F + + P +R + FQ Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 R ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 >gi|225850417|ref|YP_002730651.1| phage integrase family protein [Persephonella marina EX-H1] gi|225645629|gb|ACO03815.1| phage integrase family protein [Persephonella marina EX-H1] Length = 292 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 78/299 (26%), Positives = 129/299 (43%), Gaps = 69/299 (23%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI-RAFISKRRTQKIGDR---- 86 S T+++Y D +QF +Q++ TEI +A I+K R +R Sbjct: 18 SAYTVRNYRTDLKQF-------------VQSVGDKDITEITKADIAKFRMFLQANRRKSS 64 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ---ALTLVDNVLL 143 ++ R L+ + SF +YL ++ + S + K S +P +L+ ++ L +N+L Sbjct: 65 TIARKLASVNSFFEYLIDLELISSSPVSKSHRPKVSQKIPSSLSNEEIQKVLKSCENLLE 124 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSL--------------TPQNIMDDQST-- 187 T ++ L+ G+R SE LS+ P I+++ + Sbjct: 125 KT-------------VIVLMLTTGIRSSELLSIRRSDILIEKDGRTFAPDTILENYTDGS 171 Query: 188 ----LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 ++I+GKG K R+VP+ +L+Y L+ N LF P + Sbjct: 172 EVAYIKIKGKGGKERVVPVSGKPLNILLQY-------LDKNRDERLF------PFSYHTL 218 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 +R I + G+PL H LRH+ AT L +G +LR IQ +LGH TT Y V Sbjct: 219 RRLISNIGSRSGIPLH--PHKLRHTAATIALKSGAELRVIQELLGHASPLTTARYAKVG 275 >gi|213972099|ref|ZP_03400191.1| site-specific recombinase, phage integrase family [Pseudomonas syringae pv. tomato T1] gi|302061577|ref|ZP_07253118.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. tomato K40] gi|302131091|ref|ZP_07257081.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213923137|gb|EEB56740.1| site-specific recombinase, phage integrase family [Pseudomonas syringae pv. tomato T1] Length = 318 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 75/291 (25%), Positives = 124/291 (42%), Gaps = 33/291 (11%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W N+ R T ++Y+ D R F F+ E+ R ++ + A+ ++ Sbjct: 31 WFANIRNPR-----TRRAYQADLRDFCSFVGLAGAEEF-----RVVNRAHVLAWRAQLER 80 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN-LKKSNSLPRALNEKQALTLVD 139 + + +++R L+ + S YL ++N L N + P NE + L D Sbjct: 81 RALSGATIRRKLAALASLFDYL------LDNNALAGGNPVHGVARPPVETNEGKTPALGD 134 Query: 140 NV---LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194 + LL + R+ AIL +L GLR E L ++ + + LRI GKG Sbjct: 135 DQAKRLLDAPDDESLQGLRDRAILAVLLYQGLRREELSLLQTGDLQERRGVKHLRIHGKG 194 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQL-R 251 KIR +PL P + I +C Q P LF +RGK G+ + + + Sbjct: 195 GKIRYLPLHPVAAERIY----VCLVRDGDRAQTPGALFCSLRGKTSGTGITGKGVYGVVS 250 Query: 252 RYLGLPL----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 ++ L H LR + AT+ L + D+ +Q LGH +STT++Y Sbjct: 251 KWASAALIHVDGLGVHGLRATAATNALEHDADIAKVQMWLGHANISTTRLY 301 >gi|159901555|ref|YP_001547801.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779] gi|159894594|gb|ABX07673.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779] Length = 160 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 51/149 (34%), Positives = 75/149 (50%), Gaps = 13/149 (8%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPL-LPSVRKAILEY----YD 215 ++Y CGLRI E +SL +I + L I GKG+K R VPL LP++ + + + Sbjct: 2 VIYACGLRIQEGVSLQVSHIDSARMVLHIHAGKGNKDRRVPLPLPALVRLRTHWRTHRHP 61 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275 + F +R +P+ R + + G+ T HTLRHS+ATHLL Sbjct: 62 IWLFPAR-------YRDSLDQPMAQRSVARAFQVALQESGIQKPATVHTLRHSWATHLLE 114 Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 G +LR IQ LGH TT +YT++ + Sbjct: 115 AGINLRIIQDWLGHRSPRTTALYTHLTPQ 143 >gi|182417143|ref|ZP_02948516.1| integrase/recombinase, phage integrase family [Clostridium butyricum 5521] gi|237667184|ref|ZP_04527168.1| phage integrase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378985|gb|EDT76491.1| integrase/recombinase, phage integrase family [Clostridium butyricum 5521] gi|237655532|gb|EEP53088.1| phage integrase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 332 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 76/300 (25%), Positives = 136/300 (45%), Gaps = 36/300 (12%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +LQ ++E SK TL +Y R F F+ + + ++ +IR F++ T Sbjct: 61 YLQVKKLE-NYSKATLSNYMYTLRNFSTFIN---------KPVSTITKNDIRYFMAINYT 110 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + ++ L+ +K+F +++++ +I ++ ++ + LP+ L + + ++ Sbjct: 111 N-LKPSTVNNKLASLKAFFEWMEQEEIIPKNPARHLSGTR----LPKRLRKSLTIEELEK 165 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + L D R ++ L+ G RISE + ++ ++LR+ GKGDK RIV Sbjct: 166 IRLVCK------DVRERVLIEFLFATGCRISEVVKANISDLDLSNNSLRVIGKGDKQRIV 219 Query: 201 PLLPSVRKAILEYYDLCPFD---LNLNIQLPLFR-GIRGKPLNPGVFQRYIRQLRRYLGL 256 + + Y D + L ++ + P R RG L R +G Sbjct: 220 FFSDKTKLHLKNYIDTRKDNEDALFISSKFPYNRISKRGLELIVSKIGE-----RSNIGK 274 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 P+ H LRH+ AT L +G D+ +IQ +LGH STTQIY ++N D + Y Q Sbjct: 275 PV--FPHLLRHTMATLGLQSGADITTIQHLLGHTTPSTTQIY----AENSLDNLKHEYKQ 328 >gi|125973642|ref|YP_001037552.1| phage integrase [Clostridium thermocellum ATCC 27405] gi|125713867|gb|ABN52359.1| phage integrase [Clostridium thermocellum ATCC 27405] Length = 301 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 64/232 (27%), Positives = 108/232 (46%), Gaps = 33/232 (14%) Query: 84 GDRSLKRS-----LSGIKSFLKYLKKRKITTESNILNMRNLK-KSNSLPRALNEKQALTL 137 G R LK + L+ +K + +L+ K + N+R +K +S ++ ++L+E+ L Sbjct: 72 GTRHLKETTINLRLASLKCYFSFLESEKYIKHNPARNIRKIKLQSPNIAKSLDEQTYRAL 131 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS--LTPQNIMDDQSTLRIQGKGD 195 H + + + A+ + CG+R E ++ LT +I D + TL+I GK + Sbjct: 132 -------RRHVYRGGNKAHIAMFEIFTRCGVRNFELINIRLTDFDISDRKGTLKIVGKLN 184 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPG----VFQRYIR 248 K+R +PL VR AI + ++ NI+ LF R P +F++Y Sbjct: 185 KVRYIPLHKDVRDAINNW-----MEIRKNIKTEYDNLFISERKTPYTRSGIWKIFKKYCE 239 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR-LSTTQIYT 299 Q +G+ T H+ RH F LL NG D+ + + GH T Q+YT Sbjct: 240 Q----IGIT-DVTIHSFRHYFCRTLLKNGVDISVVAKLAGHSSGFVTAQVYT 286 >gi|157415130|ref|YP_001482386.1| phage integrase family site specific recombinase [Campylobacter jejuni subsp. jejuni 81116] gi|157386094|gb|ABV52409.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni 81116] gi|307747772|gb|ADN91042.1| Site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni M1] Length = 354 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 76/275 (27%), Positives = 129/275 (46%), Gaps = 37/275 (13%) Query: 45 QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK 104 ++L F Y+ ++I + I E+ A I T + D S K + +F +L K Sbjct: 85 EYLNFYKLYSLKQIDEELI-----VEVLASI----TGALSDASKKNYRIAVINFFDFLDK 135 Query: 105 RKITTESNILNMRNLK--------KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156 + E + NLK K LP ++E++ +D + + + + RN Sbjct: 136 QNEEDEKAHIFDINLKNWAGIAGSKGVKLPEFMSEEELKKFLDAI---ENADFRNNTVRN 192 Query: 157 SAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 I+ ++ G+R+SEA+++ +I + D +RI+ KG+K R+V ++K ++ Y Sbjct: 193 KLIIKIIIFTGIRVSEAINIKMGDISEENDLYIIRIRAKGNKYRVV----MIKKELI--Y 246 Query: 215 DLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHS 268 DL N++I LF +G PL R + QL G+ AH LRH+ Sbjct: 247 DLLK---NVSINYMSKDALLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHMLRHT 303 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 FAT L DL +Q LGH L+T++IYT+ ++ Sbjct: 304 FATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDN 338 >gi|325067049|ref|ZP_08125722.1| integrase family protein [Actinomyces oris K20] Length = 236 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 58/219 (26%), Positives = 99/219 (45%), Gaps = 14/219 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT-IRQLSYTEIRAFISKRRTQKI 83 L ++R LS T+++Y D L FL + + T + L ++R +++ Sbjct: 25 LALQRDLSAHTVRAYLVDISDLLSFLGVGEGDAEPVDTALATLDLADLRDWLAAMAASGH 84 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 +L R + +++F + + + T +R + N LP L +QA L+ Sbjct: 85 SRATLARRSASVRTFSSWAFETGLLTSDVAARLRAPRVDNRLPGVLTTQQASQLLKTAS- 143 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL- 202 + + + R+ AI+ LY G+R+SE + L ++ Q TLR+ GKG K R VP Sbjct: 144 DLASDGHVLAVRDLAIVETLYATGVRVSELVGLDVADLDHSQRTLRVLGKGRKERTVPYG 203 Query: 203 LPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGK 236 LP+ R LE + ++C D LF G RG+ Sbjct: 204 LPAARA--LEAWLHRRGEICAVDAG----GALFLGARGR 236 >gi|317181986|dbj|BAJ59770.1| integrase-recombinase protein [Helicobacter pylori F57] Length = 355 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 92/194 (47%), Gaps = 14/194 (7%) Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 N N LP LN ++ +D + + + RN ++ ++ G+R +EAL L Sbjct: 157 NQSAGNKLPTHLNNEELEKFLDGI--DKIEMSAKVRTRNRLLIKIIVFTGMRSNEALQLK 214 Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231 ++ + T+ I+GKGDK R V L + S+ K L +L P +L LF Sbjct: 215 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLMERELYPVKNDL-----LFC 269 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290 +G L + + ++ + GL AH LRHSFAT L DL +Q LGH Sbjct: 270 NQKGSALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 329 Query: 291 RLSTTQIYTNVNSK 304 L+T++IYT+ + + Sbjct: 330 SLNTSRIYTHFDKQ 343 >gi|119714859|ref|YP_921824.1| phage integrase family protein [Nocardioides sp. JS614] gi|119535520|gb|ABL80137.1| phage integrase family protein [Nocardioides sp. JS614] Length = 412 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 74/289 (25%), Positives = 128/289 (44%), Gaps = 25/289 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 W + + ++RGL++ ++ Y R + + L + +L+ T I A+++ R Sbjct: 127 QWCEWMRVQRGLTEKSIVRY----RYYAVGLLDQVTTADGSVSWDRLNATMINAYVADR- 181 Query: 80 TQKIGDRSLKRSLSGIKSFLKY-LKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALT 136 + G + + ++ L++ L ++ + + IL K+S LPR + Q Sbjct: 182 GRGYGVAAKAHVVGSVRCLLRWALSTGRLDRDLSAGILKPSGTKRS--LPRGVTADQV-- 237 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 LL T I AR+ A++ +L GLR EA L +I +R+ GKG + Sbjct: 238 ---AALLAVCDPTTAIGARDRALVLMLVRLGLRAGEAAHLMLDDIDWAGGQVRVTGKG-R 293 Query: 197 IRIVPLLPSVRKAILEYYDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 ++PL V +A+ + L P D + ++L R + GV R L Sbjct: 294 EHVLPLPVDVGQALEAWLRLRPEALDRAVFVRLRAPRQMMTASGTSGVIAR----LSSMA 349 Query: 255 GL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 G+ P+ AH LRH+ A +L+ GG L + +LGH TT Y V+ Sbjct: 350 GIEPIH--AHRLRHTAAMDVLAAGGTLSEAKELLGHVYTVTTMTYAKVD 396 >gi|257074479|ref|YP_003162877.1| integrase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048700|gb|ACV37886.1| integrase family protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 322 Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 73/297 (24%), Positives = 124/297 (41%), Gaps = 40/297 (13%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W NL +K T ++YE F+ F E+ T IRA + R Sbjct: 34 WFANLG-----NKATRRAYENALGDFMKFTGIVKPEEFR---------TVIRAHVIAWRD 79 Query: 81 ----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN--LKKSNSLPRALNEKQA 134 + + +++ L+ + S + L ++ T + + ++ ++ AL + QA Sbjct: 80 DLVQRALSGMTVRHRLAALSSLFESLCEKNAVTHNPVKGVKRPPVESYEGKTPALGDHQA 139 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ---STLRIQ 191 L+D R+ AIL L LR E LT ++ ++ L++ Sbjct: 140 RKLLD-----APDGASLKGKRDRAILATLLYHALRRDELCRLTVKDYKHERRGVPHLKVF 194 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG--------KPLNPGVF 243 GKG KIR VPL P+ I +Y ++ + LFR +R + + P Sbjct: 195 GKGGKIRYVPLHPAAGGLIGDYLEIAGH--GADDAGALFRPLRNNCTTGGLERAITPDAV 252 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + +RQ LG + AH LR + AT+ L + D+ +Q LGH ++TT+IY + Sbjct: 253 YKLVRQYSTALGFAIG--AHALRATAATNALDHQADIAKVQEWLGHANIATTRIYDH 307 >gi|217033697|ref|ZP_03439124.1| hypothetical protein HP9810_5g39 [Helicobacter pylori 98-10] gi|216943886|gb|EEC23323.1| hypothetical protein HP9810_5g39 [Helicobacter pylori 98-10] Length = 370 Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 14/194 (7%) Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 N N LP LN ++ ++ + + + ARN ++ ++ G+R +EAL L Sbjct: 157 NQSAGNKLPTHLNNEELEKFLEGI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 214 Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231 ++ + T+ I+GKGDK R V L + S+ K L +L P +L LF Sbjct: 215 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLMERELYPVKNDL-----LFC 269 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290 +G L + + ++ + GL AH LRHSFAT L DL +Q LGH Sbjct: 270 NQKGSALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 329 Query: 291 RLSTTQIYTNVNSK 304 L+T++IYT+ + + Sbjct: 330 SLNTSRIYTHFDKQ 343 >gi|24373721|ref|NP_717764.1| phage integrase family site specific recombinase [Shewanella oneidensis MR-1] gi|24373766|ref|NP_717809.1| phage integrase family site specific recombinase [Shewanella oneidensis MR-1] gi|24348094|gb|AAN55208.1|AE015659_2 site-specific recombinase, phage integrase family [Shewanella oneidensis MR-1] gi|24348149|gb|AAN55253.1|AE015663_3 site-specific recombinase, phage integrase family [Shewanella oneidensis MR-1] Length = 287 Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 61/225 (27%), Positives = 109/225 (48%), Gaps = 27/225 (12%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 +LK L+GI F +++ KR T + ++ K+ + LP+ L+ + + +L H Sbjct: 65 TLKLQLNGIHFFYEHVLKRDFTIQLSLP-----KRPHKLPQLLSCQD----IAALLYHCQ 115 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS 205 + + A+L L YGCGLR+SE + +I + L++ QGKG R V L P+ Sbjct: 116 ------NLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGACDRWVILSPT 169 Query: 206 VRKAILEYYDLC-PFDLNLNIQLPLFRGIRGK---PLNPGVFQRYIRQLRRYLGLPLSTT 261 + + +Y+ P + LF PL+ F++ + + R + + Sbjct: 170 LLILLRQYWQAYHPVEW-------LFASTYHDVVYPLHESTFRKALAKAARLASITKPCS 222 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 H+LRH++ATH L G L +Q+ LGH + +T+ Y + + + G Sbjct: 223 PHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPELG 267 >gi|247663508|gb|ACT09079.1| IntI1 [Vibrio cholerae] gi|247663514|gb|ACT09082.1| IntI1 [Vibrio cholerae] Length = 313 Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 76/302 (25%), Positives = 124/302 (41%), Gaps = 58/302 (19%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 33 TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 83 LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207 + LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191 Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +A + F + + P +R Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT I Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311 Query: 298 YT 299 YT Sbjct: 312 YT 313 >gi|237801966|ref|ZP_04590427.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024824|gb|EGI04880.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 318 Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 78/293 (26%), Positives = 125/293 (42%), Gaps = 37/293 (12%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W N+ R T ++Y+ D R F F+ E+ R ++ + + A+ ++ Sbjct: 31 WFANIRNPR-----TRRAYQADLRDFCSFVGLAGAEEF-----RAVNRSHVLAWRAQLER 80 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLVD 139 + + +++R L+ + S YL +N L N + P+ NE + L D Sbjct: 81 RALSGATIRRKLAALASLFDYL------LNNNALAGGNPVHGVARPKVETNEGKTPALGD 134 Query: 140 NV---LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194 + LL R+ AIL +L GLR E L ++ + + LRI GKG Sbjct: 135 DQAKRLLDAPDAESLQGVRDRAILAVLLYHGLRREELSLLQTGDLQERRGVKHLRIHGKG 194 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR--- 251 KIR +PL P + I Y + D L LFR RGK G+ + + + Sbjct: 195 GKIRYLPLHPVAAERIYVYL-VRDGDRALTPG-ALFRSQRGKTSGTGITGKGVYGVVTKW 252 Query: 252 ------RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 R GL + H LR + AT+ L + D+ +Q LGH +STT++Y Sbjct: 253 ASAAQIRVDGLGV----HGLRATAATNALEHDADIAKVQIWLGHANISTTRLY 301 >gi|296163768|ref|ZP_06846471.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295885989|gb|EFG65904.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 329 Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 79/287 (27%), Positives = 115/287 (40%), Gaps = 22/287 (7%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDR 86 ER S T+ +Y R L F A T + + + + AF+ R +K R Sbjct: 19 ERHASPCTVAAYRDTWRLLLGFCAKRTGKSPSALDFTDFDISLVCAFLDHLERDRKNSVR 78 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV----L 142 + L+ I S +Y R + I + + LP+ E+ +T + V L Sbjct: 79 TRNARLAAIHSLFRYAALRHPEHAATIARVLAI-----LPKRF-ERAIVTFLTEVEVQAL 132 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVP 201 L T W R+ A+L + GLRISE + L ++ + + + QGKG K RI P Sbjct: 133 LAAPDRTLWSGRRDYAMLLVAVQTGLRISEVIGLLWTDVHLGAGAHVACQGKGRKDRITP 192 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 L V K + + C N LF G PL+ +R I +T Sbjct: 193 LTVPVVKVLRVWLAEC----EANPAARLFPTRTGTPLSRDAIERRITLHAAKASAACATL 248 Query: 262 A------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 A H LRH+ A LL G D I LGH + TT IY + + Sbjct: 249 ANKNVTFHVLRHTAAMRLLEAGVDPTVIALWLGHEHVDTTTIYLHAH 295 >gi|208743365|ref|YP_002267816.1| site-specific tyrosine recombinase XerS [Bacillus cereus] Length = 361 Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 84/332 (25%), Positives = 135/332 (40%), Gaps = 45/332 (13%) Query: 16 KERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFL-----AFYTEEKIT------IQT 62 K + W ++ E++ LS TL +Y + +FL +L A + +T I T Sbjct: 17 KSKMPWYIIEYAEMKTALSPATLYAYITEFEKFLKWLISNRLAVENGKVVTNICDVPIST 76 Query: 63 IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122 + L E R F + + I R++ R+ S +KS KYL + + RN+ Sbjct: 77 LENLPLNEARTFQRYLQGEGIETRAINRTFSALKSLFKYLAQNTENEQGENYISRNVMDK 136 Query: 123 NSLPRA---------------LNEKQALTLVDNVLLHTSHETKWID-----------ARN 156 L + NEK + + + K I R+ Sbjct: 137 IELHKEKVDAAARADDVANMIFNEKDDVAFLQFLANDYGEMLKDISPKKYSFFQRDKERD 196 Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 AI+ L+ G GLR+SE SLT +I Q +++ KG+K V S + EY + Sbjct: 197 IAIISLILGTGLRVSEVASLTISSINFRQGKVKVTRKGNKRSSVLATRSCLDDVQEYIKV 256 Query: 217 CPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQL--RRYLGLPLSTTAHTLRHSFATH 272 P N + L +GK V R I++L + + H LRH++AT+ Sbjct: 257 RPSKYNCPQDEDLLFVTNYKGKYTQLTV--RAIQKLCDKYSSAFDEKRSPHKLRHTYATN 314 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 DL ++ LGH + T IYTN+N++ Sbjct: 315 HYKENKDLVLLRDQLGHTSVEVTSIYTNINNE 346 >gi|206580735|ref|YP_002237616.1| site-specific recombinase, phage integrase family [Klebsiella pneumoniae 342] gi|206569793|gb|ACI11569.1| site-specific recombinase, phage integrase family [Klebsiella pneumoniae 342] Length = 308 Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 62/235 (26%), Positives = 99/235 (42%), Gaps = 33/235 (14%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 LSG++S +Y R + + + M + + P ++ + ++L + W Sbjct: 66 LSGLRSLYQYAVSRGLADTNPLPVMSPARPAAFEPYIYSQAELISL-----FKAAETVAW 120 Query: 152 IDARNSA----ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206 + IL L+Y GLR+SE +SL +++ + L++ Q K K R+VP P + Sbjct: 121 ARTLYAGDLHLILLLIYSAGLRVSELISLNREDVGLKECVLKVRQSKFGKTRLVPFSPQL 180 Query: 207 RKAILEY---YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA- 262 R +L Y+ P F G + Q Y R+LR G+ A Sbjct: 181 RDKLLTVEARYN------TTECSTPFFVSHAGNRICTYTLQNYFRRLRNECGITRHDGAR 234 Query: 263 -----HTLRHSFATHLLS----NGGD----LRSIQSILGHFRLSTTQIYTNVNSK 304 H LRHSFA H L+ NG D L + LGH L TQ+Y ++ + Sbjct: 235 YEPRIHDLRHSFAVHRLTSWYRNGDDVQLLLPQLSVYLGHVHLRATQVYLSMTPE 289 >gi|153951127|ref|YP_001398120.1| phage integrase family site specific recombinase [Campylobacter jejuni subsp. doylei 269.97] gi|152938573|gb|ABS43314.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. doylei 269.97] Length = 354 Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 76/273 (27%), Positives = 130/273 (47%), Gaps = 33/273 (12%) Query: 45 QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK 104 ++L F Y+ ++I + I E+ A I T + D S K + +F +L K Sbjct: 85 EYLNFYKLYSLKQIDEELI-----VEVLASI----TGALSDASKKNYRIAVINFFVFLDK 135 Query: 105 RKITTESNILNMRNLK--------KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156 + E + NLK K LP ++E++ +D + + + K RN Sbjct: 136 QNEEDEKAHIFDINLKNWAGIAGSKGVKLPEFMSEEELKKFLDAI---ENADFKNNTIRN 192 Query: 157 SAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 I+ ++ G+R+SEA+++ +I + D +RI+ KG+K R+V ++K ++ Y Sbjct: 193 KLIIKIIIFTGIRVSEAINIKIGDISEENDLYIIRIRAKGNKYRVVM----IKKELI--Y 246 Query: 215 DLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFA 270 DL ++++N LF +G PL R + QL G+ AH LRH+FA Sbjct: 247 DLLK-NVSINYMSKDALLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHMLRHTFA 305 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 T L DL +Q LGH L+T++IYT+ ++ Sbjct: 306 TLLYKKQKDLVLVQEALGHASLNTSRIYTHFDN 338 >gi|30250123|ref|NP_842193.1| integron integrase [Nitrosomonas europaea ATCC 19718] gi|30139230|emb|CAD86100.1| Integron integrase; Phage integrase; Phage integrase N-terminal SAM-like domain [Nitrosomonas europaea ATCC 19718] Length = 323 Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 95/182 (52%), Gaps = 37/182 (20%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKG--DKIRIVP--LLPSVRKAILEYYDL 216 LLYG G+R+ E + L +++ ++ + I+ GKG D++ I+P L+ ++ +L+ L Sbjct: 133 LLYGTGMRLMECVRLRVKDVDFERGEILIRDGKGAKDRVTILPESLVSPLQTYLLQRRVL 192 Query: 217 CPFDLNL---NIQLP--------------LFRGI---------------RGKPLNPGVFQ 244 D+ L ++ LP +++ I R ++ + Q Sbjct: 193 FDDDIRLGKASVYLPDALERKYPNAATDWIWQYIFPSGSFSIDPRSSVERRHHIDEKLLQ 252 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 R +++ + G+ T HTLRHSFATHLL +G D+R+IQ +LGH + TT IYT+V +K Sbjct: 253 RAMKKAVQTSGITKLATPHTLRHSFATHLLDSGYDIRTIQELLGHKDVHTTMIYTHVLNK 312 Query: 305 NG 306 G Sbjct: 313 GG 314 >gi|168335500|ref|ZP_02693581.1| integrase family protein [Epulopiscium sp. 'N.t. morphotype B'] Length = 351 Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 76/307 (24%), Positives = 130/307 (42%), Gaps = 32/307 (10%) Query: 27 IERGLSKLTLQSYECDTRQFLIF-------LAFYTEEKITIQTIRQLSYTEIRAFI---- 75 IE S T Y D R FL F + +IT+ I++LS I FI Sbjct: 34 IEHTTSSSTRLGYLYDLRIFLDFVIKSNLIMGKINRIEITVLDIQKLSPRNIEKFIVYLN 93 Query: 76 --------SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES--NILNMRNLKKSNSL 125 + K +R R LS +K+ KY KR I + ++ M + + Sbjct: 94 SYEKIDIEGNKNIYKNSNRGKARKLSALKTMFKYFYKRGIINNNPVGVIEMPKRYEKTII 153 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNI 181 +E + L V S K R+ AI+ LL G G+R+SE + L ++ Sbjct: 154 KLDADEIEDLIFVVESGEQLSPAQKRYHTKTKIRDVAIICLLLGTGIRVSECVGLNINDV 213 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241 + ++I KG I+ V + + YY++ + ++ PLF ++ + ++ Sbjct: 214 DFKYNGIKITRKGGNESIIYFSKEVEQGLKNYYEIRKEKSSKDLDEPLFLSLQNRRISTR 273 Query: 242 VFQRYIRQLRRYLGLPL---STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QI 297 + + + ++Y GL + T H LR ++ T L GD+ + ILGH ++TT + Sbjct: 274 MVEVLV---KKYAGLITKLKTITPHRLRTTYGTRLYEETGDIYLVADILGHKDVNTTKKY 330 Query: 298 YTNVNSK 304 Y N++ K Sbjct: 331 YVNMDDK 337 >gi|290475364|ref|YP_003468252.1| integrase/recombinase [Xenorhabdus bovienii SS-2004] gi|289174685|emb|CBJ81481.1| Integrase/recombinase [Xenorhabdus bovienii SS-2004] Length = 305 Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 112/219 (51%), Gaps = 24/219 (10%) Query: 91 SLSGIKSFLKYLKKRKITTES--NILNMRNLKKSNSLP--RALNEKQALTLVDNVLLHTS 146 +L G+ L+ ++I T+S +I +R+++ N LP RAL+ + TL Sbjct: 83 ALKGVA--LEAWTMKQIDTDSFQHIKQVRSVR-GNRLPKGRALDRYEIKTLF--FTCEND 137 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 TK + R++AI+ +L GCGLR SE +SL ++++ + LR+ GKG+K R+ + Sbjct: 138 FSTKGL--RDAAIIGVLVGCGLRRSEIISLDLKHVIRREQALRVMGKGNKERLSYMPEGT 195 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIR-------GKPLNPGVFQRYIRQLRRYLGLPLS 259 + + + D ++ + PLF IR + + ++ +I + RR Sbjct: 196 WERLNRWID----EIRGDYAGPLFTRIRRDDDVTDNRLSDQAIY--HILETRRIESGLEK 249 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 H LR +FA+ +L NG D+ +++ +GH ++TTQ Y Sbjct: 250 FAPHDLRRTFASAMLDNGEDIVTVKDAMGHSSITTTQKY 288 >gi|58616527|ref|YP_195656.1| putative integrase [Azoarcus sp. EbN1] gi|56315989|emb|CAI10632.1| putative integrase [Aromatoleum aromaticum EbN1] Length = 318 Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 80/307 (26%), Positives = 140/307 (45%), Gaps = 25/307 (8%) Query: 5 NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64 +P ++ EL + + +L RGLS T + C + L+ F + + + T+R Sbjct: 18 EIPAPIADEL----RRYDDHLRDVRGLSAGTRRD-RCRIVEQLLRKKF-ADGVVNMATLR 71 Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES-----NILNMRNL 119 + ++R FI+++ + + S ++S+L+Y R I +S +++ Sbjct: 72 AV---DVRRFIARQLGDSPSHSAAAQLASALRSYLRY---RTICGDSVAGLNAVISSPVQ 125 Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 K SLPRAL Q LL +W R AI+ GLR E +L + Sbjct: 126 WKLASLPRALRPDQV-----QRLLGAFPYGRW-PRRGYAIVRCALDMGLRAGEIANLLIE 179 Query: 180 NIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238 +I + T+ ++G K + ++PL + +A+ +Y ++ RG R P+ Sbjct: 180 DIDWREGTVTLKGTKSRRQDVLPLPMATGQALADYLQHERPAISSRAIFLCRRGSRDIPI 239 Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 Q IR+ R +GLP S + H LRH+ A L+ NG L+ + +L H L TT+IY Sbjct: 240 TTDAVQNVIRRACRRVGLPDSGS-HLLRHTLACRLVENGSSLKEVADVLRHRSLETTRIY 298 Query: 299 TNVNSKN 305 +++ N Sbjct: 299 AKLDTPN 305 >gi|308062001|gb|ADO03889.1| integrase-recombinase protein [Helicobacter pylori Cuz20] Length = 355 Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 14/194 (7%) Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 N N LP LN ++ ++ + + + ARN ++ ++ G+R +EAL L Sbjct: 157 NQSAGNKLPTHLNNEELEKFLEGI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 214 Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231 ++ + T+ I+GKGDK R V L + S+ K L +L P +L LF Sbjct: 215 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLMERELYPVKNDL-----LFC 269 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290 +G L + + ++ + GL AH LRHSFAT L DL +Q LGH Sbjct: 270 NQKGSALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 329 Query: 291 RLSTTQIYTNVNSK 304 L+T++IYT+ + + Sbjct: 330 SLNTSRIYTHFDKQ 343 >gi|289806997|ref|ZP_06537626.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 232 Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 90/184 (48%), Gaps = 11/184 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L L +ER L++ TL +Y D + +L + T Q +++ +++R Sbjct: 9 EQFLDALWLERNLAENTLSAYRRDLSMVVAWLHHRGKTLATAQA------DDLQTLLAER 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 S R LS ++ F ++L + K + + + K LP+ L+E Q L+ Sbjct: 63 VEGGYKATSSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQVERLL 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 L+ ++ R+ A+L +LY GLR+SE + LT +I Q +R+ GKG+K R Sbjct: 123 QAPLIDQP-----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177 Query: 199 IVPL 202 +VPL Sbjct: 178 LVPL 181 >gi|218441747|ref|YP_002380076.1| integrase [Cyanothece sp. PCC 7424] gi|218174475|gb|ACK73208.1| integrase family protein [Cyanothece sp. PCC 7424] Length = 294 Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 74/291 (25%), Positives = 129/291 (44%), Gaps = 51/291 (17%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRSL 88 G SK + +Y +QFL ++ + +++L +++ ++S +Q+ +L Sbjct: 33 GKSKTSQNTYASHIKQFLEYVG---------KPLKELKLEDMQLWVSSLENSQRYKTATL 83 Query: 89 KRSLSGIKSFLKYLKKR-----KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 K ++ +KS L + +K I + N +N S R L+E + TL+ Sbjct: 84 KLKINTVKSLLTFGQKVGYLQFNIGSAVKPPNPKNELSS----RMLSETEVTTLI----- 134 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVP 201 E + R+ IL L+Y CG+R+SE + L ++++ ++ + GKG K R+V Sbjct: 135 ----EKANQNQRDRIILKLMYVCGMRVSEVVGLNWRDLVPNNNGGLAIVLGKGGKTRVV- 189 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQ-LP-----LFRGIRGKPLNPGVFQRYIRQLRRYLG 255 L P L L+IQ LP +F + ++ I+Q + G Sbjct: 190 --------------LIPEKLWLDIQQLPKTDDAVFISRKKNRISRKTVHYMIKQYAKQAG 235 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 + + + H LRHS ATH + G +L +Q LGH LS T Y + G Sbjct: 236 INGNVSPHWLRHSHATHSIERGCNLHLLQQSLGHSNLSITSRYLHARPNEG 286 >gi|186474603|ref|YP_001863574.1| integrase family protein [Burkholderia phymatum STM815] gi|184198562|gb|ACC76524.1| integrase family protein [Burkholderia phymatum STM815] Length = 331 Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 80/301 (26%), Positives = 133/301 (44%), Gaps = 32/301 (10%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ---TIRQLSYTEIRAF 74 R+ L+ L +R L++ T SY DT + L + ++++ T TI LS + +R+F Sbjct: 12 RRFLLEYLVTDRNLARNTQASYR-DT--LTLLLPYLSKDRKTSADRLTIDDLSPSLLRSF 68 Query: 75 ISKRRTQKIGDRSLKRS--LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 ++ ++ G + R+ L+ I S +++ + +R ++P K Sbjct: 69 LAYLEKER-GCSGVTRNTRLATIHSLARFIGMHSPEHVAWSAEIR------AIPFRKTPK 121 Query: 133 QALTLVD----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQST 187 LT +D + LL + R+ A+L +Y G R E LT + ++ + Sbjct: 122 ATLTYMDKPEIDALLQVPDIRTPLGRRDYALLLFMYNTGARADEVAHLTVGDCVLHGSLS 181 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRY 246 +R+ GK +K R PL V L PF +F G+PL G++ Sbjct: 182 VRLVGKANKARWCPLWADVADV------LRPFVAGRATHDFVFLNRLGQPLTRFGIYGLV 235 Query: 247 IRQLRRYLGLPLSTTA-----HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 R + R S A H +RHS A HLL +G D+ +I++ LGH L TT IY V Sbjct: 236 RRVVERAAETSPSLAAKQISPHCIRHSCAVHLLRSGNDINTIRAWLGHVSLDTTNIYAEV 295 Query: 302 N 302 + Sbjct: 296 D 296 >gi|217032477|ref|ZP_03437969.1| hypothetical protein HPB128_156g7 [Helicobacter pylori B128] gi|298736373|ref|YP_003728899.1| XerCD family integrase/recombinase [Helicobacter pylori B8] gi|216945823|gb|EEC24444.1| hypothetical protein HPB128_156g7 [Helicobacter pylori B128] gi|298355563|emb|CBI66435.1| integrase-recombinase protein (XerCD family) [Helicobacter pylori B8] Length = 355 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 94/194 (48%), Gaps = 14/194 (7%) Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 N N LP LN ++ ++++ + + ARN ++ ++ G+R +EAL L Sbjct: 157 NQSAGNKLPTHLNNEELEKFLESI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 214 Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231 ++ + T+ I+GKGDK R V L + S+ K L +L P +L LF Sbjct: 215 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLIERELYPVKNDL-----LFC 269 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290 +G L + + ++ + GL AH LRHSFAT L DL +Q LGH Sbjct: 270 NQKGSALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 329 Query: 291 RLSTTQIYTNVNSK 304 L+T++IYT+ + + Sbjct: 330 SLNTSRIYTHFDKE 343 >gi|15645299|ref|NP_207469.1| integrase/recombinase (xerC) [Helicobacter pylori 26695] gi|2313795|gb|AAD07734.1| integrase/recombinase (xerC) [Helicobacter pylori 26695] Length = 362 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 94/194 (48%), Gaps = 14/194 (7%) Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 N N LP LN ++ ++++ + + ARN ++ ++ G+R +EAL L Sbjct: 164 NQSAGNKLPTHLNNEELEKFLESI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 221 Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231 ++ + T+ I+GKGDK R V L + S+ K L +L P +L LF Sbjct: 222 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLIERELYPVKNDL-----LFC 276 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290 +G L + + ++ + GL AH LRHSFAT L DL +Q LGH Sbjct: 277 NQKGSALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 336 Query: 291 RLSTTQIYTNVNSK 304 L+T++IYT+ + + Sbjct: 337 SLNTSRIYTHFDKQ 350 >gi|77734445|emb|CAJ26229.1| integerase-recombinase [Thermotoga sp. KOL6] Length = 190 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 55/200 (27%), Positives = 98/200 (49%), Gaps = 30/200 (15%) Query: 92 LSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150 L +K++L + + + + E+ N K + LP+A+ ++ +++ + H ++ Sbjct: 19 LVVVKNYLNWKVDRGMMNVENRFWNEAEPPKHHVLPKAIEIEEVRKIIE-ICDHPMYK-- 75 Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 AI +L G+RISE ++L ++I ++D + +RI+GKG+K RI+ + + Sbjct: 76 -------AIFKILANTGMRISELINLEKEDISLNDSARIRIKGKGNKERIINV---TKDL 125 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 I E + F+ + P R I QR +R+ R G+ T H RHSF Sbjct: 126 IEELINSGFFE-----KKPSVRSI----------QRAVRRYARKAGIKKKVTPHVFRHSF 170 Query: 270 ATHLLSNGGDLRSIQSILGH 289 A L+ G L IQ++LGH Sbjct: 171 AVALIERGVPLNKIQALLGH 190 >gi|146301413|ref|YP_001196004.1| phage integrase family protein [Flavobacterium johnsoniae UW101] gi|146155831|gb|ABQ06685.1| phage integrase family protein [Flavobacterium johnsoniae UW101] Length = 305 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/156 (35%), Positives = 81/156 (51%), Gaps = 10/156 (6%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYY-D 215 A+L + YGCGLR SE SL +++ + L + QGKG+K R VP+ +V + +Y D Sbjct: 144 ALLSIAYGCGLRRSEIASLDLKDVNLIKGMLVVRQGKGNKRREVPMSDTVLDYLTKYVRD 203 Query: 216 LCPFDL---NLNIQLPLF--RGIR--GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 P L N N + RG R G+ LN + + I Q ++ + T H LRHS Sbjct: 204 ERPERLTGRNQNEEAFFINSRGRRSTGENLNE-ILNKMIEQTGKFELVQKEITLHCLRHS 262 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 A HL N + I++ LGH +++TT IY N K Sbjct: 263 IAYHLAENNAGIDFIRTFLGHTQINTTYIYAVQNKK 298 >gi|37520018|ref|NP_923395.1| integrase/recombinase [Gloeobacter violaceus PCC 7421] gi|35211010|dbj|BAC88390.1| integrase/recombinase [Gloeobacter violaceus PCC 7421] Length = 282 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 77/298 (25%), Positives = 123/298 (41%), Gaps = 36/298 (12%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY--TEIRAFISKRRTQK 82 LE ER L T ++Y CD +Q+ +L QT L+ ++R+++ + + Sbjct: 11 LERERRLQPATCRAYRCDLKQWFGYL----------QTANPLAARPEQLRSYLVQLGERG 60 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 IG +L+R S ++ F YL ++ + + P L +Q L+ V Sbjct: 61 IGHGTLRRKRSSLRVFYGYLHRQGVIAADPAAALPTETSRVPGPPPLRPQQLEALLGAV- 119 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202 + A++ LY GLR +E + +N+ ++ R+ R V L Sbjct: 120 -----GDDACGVCHRALILALYAGGLRSAEVSAANLENLDWERGLWRL-----PQRDVLL 169 Query: 203 LPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 P + A+L+Y L I + LF RG L+ Q Y L RY T Sbjct: 170 DPRLYAALLDYLRCGRPGLAAGIAERALFVSRRGHRLSVRALQAY---LSRY-----GVT 221 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 A LR+S+A HLL G D +Q++LG L +TQ + +YD HP Sbjct: 222 AQQLRNSYAAHLLEGGTDPVDVQALLG---LRSTQAAAG-RQPTVAQGLRRVYDLAHP 275 >gi|254779339|ref|YP_003057444.1| putative integrase/recombinase [Helicobacter pylori B38] gi|254001250|emb|CAX29225.1| Putative integrase/recombinase [Helicobacter pylori B38] Length = 356 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 94/194 (48%), Gaps = 14/194 (7%) Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 N N LP LN ++ ++++ + + ARN ++ ++ G+R +EAL L Sbjct: 158 NQSAGNKLPTHLNNEELEKFLESI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 215 Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231 ++ + T+ I+GKGDK R V L + S+ K L +L P +L LF Sbjct: 216 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLIERELYPVKNDL-----LFC 270 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290 +G L + + ++ + GL AH LRHSFAT L DL +Q LGH Sbjct: 271 NQKGSALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 330 Query: 291 RLSTTQIYTNVNSK 304 L+T++IYT+ + + Sbjct: 331 SLNTSRIYTHFDKE 344 >gi|208434593|ref|YP_002266259.1| integrase-recombinase protein [Helicobacter pylori G27] gi|208432522|gb|ACI27393.1| integrase-recombinase protein [Helicobacter pylori G27] Length = 363 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 14/194 (7%) Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 N N LP LN ++ ++ + + + ARN ++ ++ G+R +EAL L Sbjct: 165 NQSAGNKLPTHLNNEELEKFLEGI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 222 Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231 ++ + T+ I+GKGDK R V L + S+ K L +L P +L LF Sbjct: 223 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLIERELYPVKNDL-----LFC 277 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290 +G L + + ++ + GL AH LRHSFAT L DL +Q LGH Sbjct: 278 NQKGNALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 337 Query: 291 RLSTTQIYTNVNSK 304 L+T++IYT+ + + Sbjct: 338 SLNTSRIYTHFDKE 351 >gi|18310790|ref|NP_562724.1| tyrosine recombinase XerD [Clostridium perfringens str. 13] gi|110799101|ref|YP_696492.1| tyrosine recombinase XerD [Clostridium perfringens ATCC 13124] gi|168206137|ref|ZP_02632142.1| tyrosine recombinase XerD [Clostridium perfringens E str. JGS1987] gi|168210828|ref|ZP_02636453.1| tyrosine recombinase XerD [Clostridium perfringens B str. ATCC 3626] gi|168214383|ref|ZP_02640008.1| tyrosine recombinase XerD [Clostridium perfringens CPE str. F4969] gi|168215437|ref|ZP_02641062.1| tyrosine recombinase XerD [Clostridium perfringens NCTC 8239] gi|169343727|ref|ZP_02864726.1| tyrosine recombinase XerD [Clostridium perfringens C str. JGS1495] gi|182625652|ref|ZP_02953421.1| tyrosine recombinase XerD [Clostridium perfringens D str. JGS1721] gi|18145471|dbj|BAB81514.1| probable integrase/recombinase [Clostridium perfringens str. 13] gi|110673748|gb|ABG82735.1| tyrosine recombinase XerD [Clostridium perfringens ATCC 13124] gi|169298287|gb|EDS80377.1| tyrosine recombinase XerD [Clostridium perfringens C str. JGS1495] gi|170662459|gb|EDT15142.1| tyrosine recombinase XerD [Clostridium perfringens E str. JGS1987] gi|170711119|gb|EDT23301.1| tyrosine recombinase XerD [Clostridium perfringens B str. ATCC 3626] gi|170714149|gb|EDT26331.1| tyrosine recombinase XerD [Clostridium perfringens CPE str. F4969] gi|177909054|gb|EDT71529.1| tyrosine recombinase XerD [Clostridium perfringens D str. JGS1721] gi|182382078|gb|EDT79557.1| tyrosine recombinase XerD [Clostridium perfringens NCTC 8239] Length = 290 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 61/286 (21%), Positives = 136/286 (47%), Gaps = 18/286 (6%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L+ + + +L+++ G K T+ +Y D +L F+ EEK + + SY I Sbjct: 3 DLVSKYEVYLESI----GKRKNTVSAYITDVSMYLDFV----EEKGF--KVSEDSYPLI- 51 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 +++ + S++R++ +++F +L + + L M+ + P L + Sbjct: 52 SYVQHLKESHKSPSSIQRTIISLRNFYNFLVAEEFLKKVPNLTMKKERVEKKKPLVLTVE 111 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + N ++++++ R+ A+L L+Y G+++SE +SL ++I D S + + Sbjct: 112 EI-----NKIMNSTNVLTEKGIRDKALLELMYATGMKVSELISLRIEDINLDSSFVNCRD 166 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 R++P+ + ++++ Y + + N LF + G+P+ R +++ Sbjct: 167 SRGYERLIPIGKAAKESLKRY--IVVREDNSKGSDKLFLNMSGEPITRQGVWRIVKEYAV 224 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + +T RHSFA HLL NG + + +Q +LG+ ++ +Y Sbjct: 225 IANIGKDINLNTFRHSFAVHLLQNGANAKVVQELLGNQVMTYIDMY 270 >gi|291300674|ref|YP_003511952.1| integrase family protein [Stackebrandtia nassauensis DSM 44728] gi|290569894|gb|ADD42859.1| integrase family protein [Stackebrandtia nassauensis DSM 44728] Length = 345 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 29/240 (12%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S+ R+ S +F +L I + + + K + LP+ L + A + L+ + Sbjct: 74 SIGRAWSVWNAFFSFLVGEGIVEGNPMSGVARPKAARPLPKPLRGEDAPDRLLEALMSGA 133 Query: 147 HETK--WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVP 201 + W R+ A++ +L GLR SE L+L ++ R+ GKG R+VP Sbjct: 134 RAGRHPWPQ-RDVAVVAVLLLTGLRSSELLALRAGDVAGGAGERRLVVRDGKGGADRVVP 192 Query: 202 LLPSVRKAILEY------------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 + + + +Y + L P + PLF RG+ L Q +RQ Sbjct: 193 VEGPLEVLLADYLASRRGRFPGGRWPLAPSE-------PLFVDHRGEALTRNQLQYLVRQ 245 Query: 250 LRRYLGLPLSTT----AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 R+ G+ + H LRH+FAT + ++G + +LGH L+ +Q Y V + Sbjct: 246 CYRFAGVDDAVQRGALVHALRHTFATRVGASGASAMEVMELLGHRSLNASQGYLGVTGRE 305 >gi|253573841|ref|ZP_04851184.1| DNA integration/recombination/inversion protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251847369|gb|EES75374.1| DNA integration/recombination/inversion protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 356 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 80/321 (24%), Positives = 138/321 (42%), Gaps = 51/321 (15%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEK--------ITIQTIRQLSYTEIRAFISKRR 79 +R LS TL +Y D ++IF + E+ + + + +L+ EI +F++ Sbjct: 32 KRKLSHTTLLNYCHD---YIIFFDWLVAERFAAPSRKDVELSVLEKLTVREIESFLTFLE 88 Query: 80 TQKIGDRSL--KRSLSGIKSFLKYLKKRKITT------ESNIL---NMRNLKKSNSLPRA 128 Q +G+ L R LS +KS YL+ + T E N++ LK+S Sbjct: 89 YQ-LGNSKLTINRKLSALKSLFDYLQNKAETADLKPYLERNVMAKIEFNALKESQETIAN 147 Query: 129 LNEKQALTLVD------------------NVLLHTSHETKWIDARNSAILYLLYGCGLRI 170 E + L D N L HE + R++AI+ L+ G GLR+ Sbjct: 148 RIEGKILRADDFELFRQFVAYDFGEQNRENKRLFQFHE--FNRERDTAIVSLILGSGLRL 205 Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY-------YDLCPFDLNL 223 SE + +++ ++ +R+ KG+K + V + + Y Y + L Sbjct: 206 SEVAGINLEDLDMNKGLVRVIRKGNKEQYVYFSEQAKLDLENYIKIREARYKPEKSETYL 265 Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283 + P+ R + + L P ++ I + G P + T H LRHSFAT D+ + Sbjct: 266 FMGAPIGRKGKNRRLTPRSIEKLIEKYATAFGKP-ALTVHALRHSFATRYHQENNDVPRL 324 Query: 284 QSILGHFRLSTTQIYTNVNSK 304 ++ LGH + TT IYT++ + Sbjct: 325 KNQLGHASIQTTMIYTHLTDE 345 >gi|83722827|gb|ABC41685.1| integrase [uncultured bacterium] Length = 163 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/146 (34%), Positives = 69/146 (47%), Gaps = 36/146 (24%) Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPF----DLNLN---IQLP--LFRGIRGKPLNPG- 241 GKG+K R VPL S+R +L+ + F DL + LP L R + PG Sbjct: 17 GKGNKDRRVPLPVSLRDRLLQQCERVLFQHQRDLAAGGGRVHLPNALAREYPSADVQPGW 76 Query: 242 --------------------------VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275 V QR I+Q R + + + HTLRH FATHLL Sbjct: 77 QYLFPSHRMSHDPRTGRRGRHHLSEEVLQRAIKQARLQVAILQPASCHTLRHCFATHLLD 136 Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNV 301 G D+R++Q +LGH ++TTQIYT+V Sbjct: 137 AGCDIRTLQELLGHKDIATTQIYTHV 162 >gi|301166079|emb|CBW25653.1| putative integrase/recombinase [Bacteriovorax marinus SJ] Length = 366 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 58/195 (29%), Positives = 99/195 (50%), Gaps = 24/195 (12%) Query: 124 SLPRALNEK-QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 + P+ + K QA+T+ + L T K +D +I Y+ Y GLR EAL + +I Sbjct: 147 TFPKKTDRKLQAMTVGEITKLLTY--MKEVDHSWFSIFYVTYQFGLRHGEALGIKFSDID 204 Query: 183 DDQSTLRIQ---GKGDKI---------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230 +++ L IQ K +KI R VP+ VR+ +L+ Y D + ++ + Sbjct: 205 WERNHLFIQRAWKKKEKIWGPPKNGTSRFVPMNSQVREYLLKLYKGKHEDEFILPRIKKW 264 Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290 G +G + +++++R++G+ L T H+LR SF THLL G D+ S+Q ++GH Sbjct: 265 EGGKGAEV--------LKEIQRHIGIKL-TNYHSLRASFITHLLRKGQDIISVQEMVGHK 315 Query: 291 RLSTTQIYTNVNSKN 305 L TT Y ++ + Sbjct: 316 ELKTTMGYIRLDGSD 330 >gi|10956379|ref|NP_052828.1| site-specific tyrosine recombinase XerS [Bacillus anthracis] gi|21392873|ref|NP_652953.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str. A2012] gi|47566509|ref|YP_022461.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str. 'Ames Ancestor'] gi|165873427|ref|ZP_02218026.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. A0488] gi|167636785|ref|ZP_02395068.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. A0442] gi|167642201|ref|ZP_02400423.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. A0193] gi|170689789|ref|ZP_02880959.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. A0465] gi|170709646|ref|ZP_02900046.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. A0389] gi|177656331|ref|ZP_02937224.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. A0174] gi|190569527|ref|ZP_03022388.1| integrase/recombinase, phage integrase family [Bacillus anthracis Tsiankovskii-I] gi|227811617|ref|YP_002811628.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. CDC 684] gi|229599771|ref|YP_002860851.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. A0248] gi|254687687|ref|ZP_05151543.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str. CNEVA-9066] gi|254739175|ref|ZP_05196877.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str. Western North America USA6153] gi|254744974|ref|ZP_05202651.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str. Kruger B] gi|254762469|ref|ZP_05214309.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str. Australia 94] gi|301068233|ref|YP_003787004.1| tyrosine recombinase [Bacillus anthracis CI] gi|4894348|gb|AAD32436.1| pXO1-132 [Bacillus anthracis] gi|20520260|gb|AAM26142.1| integrase/recombinase, phage integrase family, (pXO1-132) [Bacillus anthracis str. A2012] gi|47552324|gb|AAT35489.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. 'Ames Ancestor'] gi|164710802|gb|EDR16380.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. A0488] gi|167509884|gb|EDR85308.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. A0193] gi|167527711|gb|EDR90550.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. A0442] gi|170125607|gb|EDS94534.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. A0389] gi|170666164|gb|EDT16957.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. A0465] gi|172079691|gb|EDT64808.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. A0174] gi|190559306|gb|EDV13330.1| integrase/recombinase, phage integrase family [Bacillus anthracis Tsiankovskii-I] gi|227007971|gb|ACP17713.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. CDC 684] gi|229269390|gb|ACQ51026.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. A0248] gi|300379318|gb|ADK08221.1| tyrosine recombinase [Bacillus cereus biovar anthracis str. CI] Length = 361 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 84/332 (25%), Positives = 135/332 (40%), Gaps = 45/332 (13%) Query: 16 KERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFL-----AFYTEEKIT------IQT 62 K + W ++ E++ LS TL +Y + +FL +L A + +T I T Sbjct: 17 KSKMPWYIIEYAEMKTALSPATLYAYITEFEKFLKWLISNRLAVENGKVVTNICDVPIST 76 Query: 63 IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122 + L E R F + + I R++ R+ S +KS KYL + + RN+ Sbjct: 77 LENLPLNEARTFQRYLQGEGIETRAINRTFSALKSLFKYLAQNTENEQGENYISRNVMDK 136 Query: 123 NSLPRA---------------LNEKQALTLVDNVLLHTSHETKWID-----------ARN 156 L + NEK + + + K I R+ Sbjct: 137 IELHKEKVDAAARADDVANMIFNEKDDVAFLQFLANDYGEMLKDISPKKYSFFQRDKERD 196 Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 AI+ L+ G GLR+SE SLT +I Q +++ KG+K V S + EY + Sbjct: 197 IAIISLILGTGLRVSEVASLTISSINFRQGKVKVTRKGNKRSSVLATRSCLDDVQEYIKV 256 Query: 217 CPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQL--RRYLGLPLSTTAHTLRHSFATH 272 P N + L +GK V R I++L + + H LRH++AT+ Sbjct: 257 RPSKYNCPQDEDLLFVTNYKGKYTQLTV--RAIQKLCDKYSSAFDEKRSPHKLRHTYATN 314 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 DL ++ LGH + T IYTN+N++ Sbjct: 315 HYKENKDLVLLRDQLGHTSVEVTSIYTNINNE 346 >gi|152985119|ref|YP_001350673.1| integrase/recombinase [Pseudomonas aeruginosa PA7] gi|150960277|gb|ABR82302.1| integrase/recombinase (E2 protein) [Pseudomonas aeruginosa PA7] Length = 337 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 80/183 (43%), Gaps = 37/183 (20%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILE-------- 212 LLYG G+RISE L L +++ D T+ + +GKG K R + L S+ + E Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLALGLREQLARARAW 198 Query: 213 ----------------------------YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 + F + + P +R + FQ Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 R ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKV 318 Query: 305 NGG 307 G Sbjct: 319 GGA 321 >gi|57234341|ref|YP_181631.1| phage integrase family site specific recombinase [Dehalococcoides ethenogenes 195] gi|57234884|ref|YP_181043.1| phage integrase family site specific recombinase [Dehalococcoides ethenogenes 195] gi|57234923|ref|YP_181020.1| phage integrase family site specific recombinase [Dehalococcoides ethenogenes 195] gi|57224789|gb|AAW39846.1| site-specific recombinase, phage integrase family [Dehalococcoides ethenogenes 195] gi|57225332|gb|AAW40389.1| site-specific recombinase, phage integrase family [Dehalococcoides ethenogenes 195] gi|57225371|gb|AAW40428.1| site-specific recombinase, phage integrase family [Dehalococcoides ethenogenes 195] Length = 319 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 74/294 (25%), Positives = 132/294 (44%), Gaps = 22/294 (7%) Query: 9 IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68 IVS L + + +L +E LS+ T+ Y Q + ++ + + ++++ Sbjct: 22 IVSTGLRRHLEAFLLACRVE-DLSRRTIFDYRQKIGQIIDYMV-----ALGLTDPKEVTA 75 Query: 69 TEIRAFI-SKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126 + IR F+ +K+ T Q + RS IK F +L + + + S + +R K + Sbjct: 76 SHIRGFLLTKQETCQPVSVHGYYRS---IKVFFNWLTREGVISFSPMAPIRPPKVPKKII 132 Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 R + +L L + R+ AI+ +L G+R+ E ++ +I D+ Sbjct: 133 RPYYPDELRSL-----LLACEGRGILSLRDRAIMLVLIDNGIRLGELANINISDIDVDRE 187 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 T+ + GKG K R+V + + A+ +Y ++ L+ K L P Sbjct: 188 TISVWGKGRKQRVVGISKRTQMAVYKY-----LHARVDNNPSLWVTTDSKTLTPKGIYLA 242 Query: 247 IRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 I +L GL + + HT RH+ AT + NGGDL +QS+LGH L+ T+ Y Sbjct: 243 IHRLGERAGLKDVRNSPHTFRHTAATLSIKNGGDLFQVQSMLGHTTLAMTRRYA 296 >gi|170726991|ref|YP_001761017.1| integron integrase [Shewanella woodyi ATCC 51908] gi|169812338|gb|ACA86922.1| integron integrase [Shewanella woodyi ATCC 51908] Length = 319 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 68/260 (26%), Positives = 111/260 (42%), Gaps = 58/260 (22%) Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 K+ + K++L I +++ K E+ L K +P+ L+ +A ++ Sbjct: 63 KVSASTQKQALCAIIFACRHVLK----IETKELQFPYAKTPQRIPQVLSSDEAKLIIS-- 116 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIV 200 ++ + I +L+G GLR+ EAL L ++I + +S QGKG K R+ Sbjct: 117 ---------FLSNYHHLIGSILFGAGLRLKEALRLRIKDIDLSTKSIFVYQGKGQKDRVC 167 Query: 201 PL-----------LPSVRKA----ILEYYDLCPFDLNLNIQLPLFRGIRGK--------- 236 L + V+K ++E + L ++L + +R K Sbjct: 168 MLPNGLVDELTLQMSHVKKIHDRDLVEGFGLASLPISL---IKKYRSSAAKFHWQYIFPA 224 Query: 237 ---------------PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281 ++P F R +R+ TAHT RHSFAT LL G D+R Sbjct: 225 SRRCIHPSDEYTCRHHIHPTAFSRELRKATTKSNTNKRVTAHTFRHSFATSLLLKGHDIR 284 Query: 282 SIQSILGHFRLSTTQIYTNV 301 +IQ +LGH + TTQIYT+V Sbjct: 285 TIQELLGHSDVKTTQIYTHV 304 >gi|134045984|ref|YP_001097470.1| phage integrase family protein [Methanococcus maripaludis C5] gi|132663609|gb|ABO35255.1| phage integrase family protein [Methanococcus maripaludis C5] Length = 275 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 83/306 (27%), Positives = 132/306 (43%), Gaps = 64/306 (20%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE----EKITIQTIRQLSYTEI 71 K R+ + L+ GLS+ TL +Y+ + IFL +Y + E +TI+ I + + E+ Sbjct: 4 KSRELVERYLKFCSGLSETTLVNYKSTMK---IFLNYYDDSLSFENLTIEDI--IEFFEV 58 Query: 72 RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LN 130 + + R T+ RSL R F ++ K K T + + + N K + R L Sbjct: 59 --YEASRNTKIYRIRSLNR-------FYEWANKHKYITGNPVRSFLNTLKPDKKERDYLT 109 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 +KQ+ L+ ++ ID G+R+SE ++ ++ ++ T+ I Sbjct: 110 QKQSDDLLRSI----------IDVNFYIFTMFFIKTGVRVSEFQNILLDDVDFNEQTIFI 159 Query: 191 QG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---------------LFRGIR 234 +G KG K R V FDL++ I L LF R Sbjct: 160 RGGKGRKDRFVF-----------------FDLDMGINLKRWLRERDILKPKAPNLFLNRR 202 Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 GK + YI L G ++ T H LRH+FAT + G DLR++Q ILGH + Sbjct: 203 GKAIGKSSITHYINYLNDVYGKKVNKRITPHILRHTFATTCVDKGMDLRTLQDILGHEDI 262 Query: 293 STTQIY 298 TT I+ Sbjct: 263 KTTSIF 268 >gi|254499439|ref|ZP_05112100.1| putative phage integrase family protein [Legionella drancourtii LLAP12] gi|254351338|gb|EET10212.1| putative phage integrase family protein [Legionella drancourtii LLAP12] Length = 326 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 78/294 (26%), Positives = 138/294 (46%), Gaps = 25/294 (8%) Query: 28 ERGLSKLTLQSYECDTRQFLIF-LAFYTEE----KITIQTIRQLSYTEIRAFISKRRTQK 82 ++ LS+ ++ SY F + L FY +E +IT +R +Y E + I +R+ Sbjct: 37 QQDLSESSISSYIQGINVFTTWALDFYQQEVCLLEITANDLR--AYREYVSKILRRKPST 94 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-PRALNEKQALTLVDNV 141 I + +K F + K + ++ + +K++ + P ALN+ + + + Sbjct: 95 INHH-----IQVLKRFYAWAAKTNLIPDNPASAIHFVKRATTTKPNALNKDE----IHAL 145 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL---RIQGKGDKIR 198 L + T + RN AI+ LL GLR+ E +L ++++ + + + GKG K R Sbjct: 146 LRASGLSTHGLALRNYAIVQLLLQSGLRVGELNNLLMKDVVIRERSGCVNVVDGKGRKHR 205 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP- 257 +PL R+A+ Y + +L LF RG+ Q I L + + Sbjct: 206 EIPLNSIARRALTRYLETRD---SLGSDDILFTTKRGEQGTIRALQALISSLAKRANITR 262 Query: 258 LSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 ++ TAHTLRH+FAT L +N G L + ++GH ++TT IYT + + + M Sbjct: 263 INVTAHTLRHTFATQFLQANPGCLVELAMLMGHESVNTTAIYTKASKEKLAEHM 316 >gi|30908748|gb|AAP37606.1| IntI [uncultured bacterium] Length = 161 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 31/64 (48%), Positives = 45/64 (70%) Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 ++P Q+ ++ R +P + + HTLRHSFATHLL +G D+R+IQ +LGH +STT I Sbjct: 98 VSPSSLQKVFKEALRKTRIPKNASPHTLRHSFATHLLQDGYDIRTIQDLLGHKEISTTMI 157 Query: 298 YTNV 301 YT+V Sbjct: 158 YTHV 161 >gi|89147436|gb|ABD62578.1| integrase [uncultured bacterium] Length = 163 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 33/57 (57%), Positives = 42/57 (73%) Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 R IR R +GL T+HT+RHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 106 RAIRNASRKIGLFKRVTSHTMRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|317180442|dbj|BAJ58228.1| integrase-recombinase protein [Helicobacter pylori F32] Length = 355 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 14/194 (7%) Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 N N LP LN ++ ++ + + + ARN ++ ++ G+R +EAL L Sbjct: 157 NQSAGNKLPTHLNNEELEKFLEGI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 214 Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231 ++ + T+ I+GKGDK R V L + S+ K L +L P +L LF Sbjct: 215 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLIERELYPVKNDL-----LFC 269 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290 +G L + + ++ + GL AH LRHSFAT L DL +Q LGH Sbjct: 270 NQKGDALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 329 Query: 291 RLSTTQIYTNVNSK 304 L+T++IYT+ + + Sbjct: 330 SLNTSRIYTHFDKQ 343 >gi|300869256|ref|ZP_07113849.1| Integrase family protein [Oscillatoria sp. PCC 6506] gi|300332747|emb|CBN59047.1| Integrase family protein [Oscillatoria sp. PCC 6506] Length = 281 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 72/274 (26%), Positives = 117/274 (42%), Gaps = 32/274 (11%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 G SK T SY T + L F+ +T+ I+ T +RT Sbjct: 20 GRSKNTAGSYRLHTSRLLSFVDNKPLSSVTLADIQAWELTLSNLSSGSQRT--------- 70 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNEKQALTLVDNVLLHTSHE 148 ++ IKS L + K + + L +R+ ++L R L+E + ++ + E Sbjct: 71 -AIFAIKSLLSFGHKLGVLPVNVGLLVRSRGVKDTLSERILSEAEVQAMIAS-------E 122 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGKGDKIRIVPLLPS 205 T D RN +L LLY GLR+SE L +++ + + I GKG+K R+V L P Sbjct: 123 T---DPRNRVMLRLLYSGGLRVSELCGLKWKDLKERPGAGGQVTIFGKGNKTRVVLLPPG 179 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 + +++ P D P+F + G L+ R ++ G+ + H Sbjct: 180 IWGGLIQLGPGQPDD-------PVFHSYLGGGHLHRSHLWRIVKAAAIRAGISDKVSPHW 232 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 LRH+ A+H L G + +Q LGH L+T Y Sbjct: 233 LRHAHASHSLDRGAPIHLVQQTLGHSSLATITRY 266 >gi|261838090|gb|ACX97856.1| integrase/recombinase [Helicobacter pylori 51] Length = 355 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 14/194 (7%) Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 N N LP LN ++ ++ + + + ARN ++ ++ G+R +EAL L Sbjct: 157 NQSAGNKLPTHLNNEELEKFLEGI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 214 Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231 ++ + T+ I+GKGDK R V L + S+ K L +L P +L LF Sbjct: 215 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLMERELYPVKNDL-----LFC 269 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290 +G L + + ++ + GL AH LRHSFAT L DL +Q LGH Sbjct: 270 NQKGSALTQAYLYKQVERIINFSGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 329 Query: 291 RLSTTQIYTNVNSK 304 L+T++IYT+ + + Sbjct: 330 SLNTSRIYTHFDKQ 343 >gi|242348058|ref|YP_002995619.1| phage integrase family protein [Aeromonas hydrophila] gi|242348136|ref|YP_002995696.1| phage integrase family protein [Escherichia coli] gi|224831725|gb|ACN66857.1| phage integrase family protein [Escherichia coli] gi|224831877|gb|ACN67008.1| phage integrase family protein [Aeromonas hydrophila] Length = 334 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 67/260 (25%), Positives = 126/260 (48%), Gaps = 32/260 (12%) Query: 58 ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK--------RKITT 109 I Q +R +++ +R + Q + D R+ + I ++L LK ++I T Sbjct: 71 IGFQNLRDCAWSSMRRHHVQAVIQILSDSD--RAPATINTYLAALKGVALEAWTMKQIDT 128 Query: 110 ES--NILNMRNLKKSNSLP--RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165 +S +I +R+++ S LP RAL + + L +K + R++AIL +L G Sbjct: 129 DSYQHIKQVRSVRGSR-LPNGRALEKHEVRALY--FTCENDRSSKGL--RDAAILAVLVG 183 Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225 CGLR SE ++L + ++ + LR+ GKG+K RI + + ++ + + ++ Sbjct: 184 CGLRRSEVVALDMECVITREQALRVLGKGNKERIAYVPDGAWQRLMRWVN----EVRGEQ 239 Query: 226 QLPLFRGIR-------GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278 LF+ IR + + ++ +I + RR H LR +FA+ +L NG Sbjct: 240 PGALFQRIRRFDDVTADRMTDQAIY--HILETRRIEAGLEKFAPHDLRRTFASAMLDNGE 297 Query: 279 DLRSIQSILGHFRLSTTQIY 298 D+ +++ +GH ++TTQ Y Sbjct: 298 DIITVKDAMGHASVTTTQKY 317 >gi|260770269|ref|ZP_05879202.1| integron integrase IntI4 [Vibrio furnissii CIP 102972] gi|260615607|gb|EEX40793.1| integron integrase IntI4 [Vibrio furnissii CIP 102972] Length = 329 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 96/226 (42%), Gaps = 49/226 (21%) Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173 L R+ KK LP L + L I A+ L+YG GLR+ E Sbjct: 91 LRFRHSKKQRKLPVVLTPTEIKKLFAA-----------IPAQTLLPYQLMYGSGLRLMET 139 Query: 174 LSLTPQNIMDDQSTLR-IQGKGDKIRIVPLL----PSVRKAILEYYDLCPFD-LNLN--- 224 + L ++I D +R Q KG K R+V L P +R I L D LN N Sbjct: 140 IRLRVKDIDFDYGAIRGWQSKGGKSRVVTLAKELHPLLRFQIETVKHLYTQDQLNPNYDG 199 Query: 225 IQLP------------------LFRGIR-----GKP------LNPGVFQRYIRQLRRYLG 255 +Q+P LF + KP L+ Q+ I + R Sbjct: 200 VQMPNRLAEKYPSASKSLEWQFLFPAKQLCRYGDKPGWYRHHLHETTLQKTIIKARFTAE 259 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + + HTLRHSFATHLL G D+R++Q LGH + TTQIYT+V Sbjct: 260 IAKPLSCHTLRHSFATHLLEAGADIRTVQEQLGHSDVKTTQIYTHV 305 >gi|89147406|gb|ABD62563.1| integrase [uncultured bacterium] Length = 163 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 48/69 (69%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 +R ++ + Q+ +++ + G+ + HTLRHSFATHLL +G D+R+IQ +LGH + Sbjct: 94 VRRHHVSEDILQQAVKRAVKRAGVTKRASCHTLRHSFATHLLEDGYDIRTIQELLGHADV 153 Query: 293 STTQIYTNV 301 STTQIYT+V Sbjct: 154 STTQIYTHV 162 >gi|308184464|ref|YP_003928597.1| integrase-recombinase protein [Helicobacter pylori SJM180] gi|308060384|gb|ADO02280.1| integrase-recombinase protein [Helicobacter pylori SJM180] Length = 356 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 14/194 (7%) Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 N N LP LN ++ ++ + + + ARN ++ ++ G+R +EAL L Sbjct: 158 NQSAGNKLPTHLNNEELEKFLEGI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 215 Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231 ++ + T+ I+GKGDK R V L + S+ K L +L P +L LF Sbjct: 216 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLIERELYPVKNDL-----LFC 270 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290 +G L + + ++ + GL AH LRHSFAT L DL +Q LGH Sbjct: 271 NQKGMALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 330 Query: 291 RLSTTQIYTNVNSK 304 L+T++IYT+ + + Sbjct: 331 SLNTSRIYTHFDKE 344 >gi|254417428|ref|ZP_05031169.1| site-specific recombinase, phage integrase family protein [Microcoleus chthonoplastes PCC 7420] gi|196175771|gb|EDX70794.1| site-specific recombinase, phage integrase family protein [Microcoleus chthonoplastes PCC 7420] Length = 319 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 75/285 (26%), Positives = 128/285 (44%), Gaps = 36/285 (12%) Query: 35 TLQSYECDTRQFLIFLAFYTEE--KITIQTIRQLSYTEI------RAFISKRRTQKIGDR 86 T +Y D R F +A E +I I+ + + + +AF+ + Q + Sbjct: 34 TRAAYGKDLRNFFFVVANTPEPTPQIVIEFLSLDRFAAVSLVLKYKAFLLE---QGLMPA 90 Query: 87 SLKRSLSGIKSFLKYLKK--RKITTESNILNMRNLKKSNSLPRALNEKQALTL--VDNVL 142 ++ R L+ IKS +K+ +K R + +I RN RA + + + VL Sbjct: 91 TVNRRLAAIKSLVKFARKIGRCNYSLEDIEGERN--------RAYRDTTGIDIKAFKRVL 142 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR-IVP 201 + TK R+ AIL+LL+ LR SE +SL ++ + TL I GKG R ++ Sbjct: 143 MECDRSTKK-GLRDYAILHLLWSNALRRSEVVSLDVKDFEPNNKTLTILGKGQASRQVIS 201 Query: 202 LLPSVRKAILEYYDL--CPFDLNLNIQLPLFRGI----RGKPLNPGVFQRYIRQLRRYLG 255 + + +AIL + + C ++ + PLF + RG L ++ + + G Sbjct: 202 ISEATTQAILAWLNERNC-----VDPKAPLFVAVSYNKRGNRLTGEALRQLVCLYCKKAG 256 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + + H +RHS TH L GD+R +Q + H +L T IY + Sbjct: 257 ISKQMSPHRIRHSSITHALDVTGDVRKVQGLSRHVKLETLMIYDD 301 >gi|223369814|gb|ACM88776.1| integrase [uncultured bacterium] Length = 163 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 16/105 (15%) Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP--GVFQRY----------IRQLRRYLGL 256 AI Y P++ P + + ++P GV +R+ +++ R G+ Sbjct: 62 AIARKYPRAPYEWGWKFVFPSY----SRSVDPRTGVLRRHHVYENYVIRGVKEAARGAGI 117 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 118 TKHVSCHTLRHSFATHLLENGYDIRTVQELLGHSDVSTTMIYTHV 162 >gi|89147671|gb|ABD62694.1| integrase [uncultured bacterium] Length = 163 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 33/69 (47%), Positives = 46/69 (66%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 +R L+ V QR ++ R G+ + HTLRHSFATHLL +G D+R++Q +LGH + Sbjct: 94 VRRHHLDESVPQRAVKDAARAAGIIKRVSCHTLRHSFATHLLESGYDIRTVQELLGHSDV 153 Query: 293 STTQIYTNV 301 STT IYT+V Sbjct: 154 STTMIYTHV 162 >gi|227461203|gb|ACP39546.1| putative integron integrase [uncultured microorganism] Length = 310 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 82/179 (45%), Gaps = 37/179 (20%) Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKG--DKIRIVP--LLPSVRK------ 208 ++LLYG G+R+ EAL L +++ D+ L ++ GKG D++ + P LL +R Sbjct: 132 VHLLYGTGMRLLEALRLRVKDVDFDRRELCVRDGKGGKDRMTVFPQVLLAPMRAHLAWRR 191 Query: 209 --------------------------AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242 A E+ F N P+ R L Sbjct: 192 TVFDEDSRRDMADVWLPDALAVKYPNAAREWGWQYVFVANRFSTDPVSGVARRHHLGESQ 251 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 Q+ +R G+ + HTL HSFATHLL +G D+R++Q +LGH +STT IYT+V Sbjct: 252 IQKLVRGAGIQAGVAKPVSPHTLHHSFATHLLESGADIRTVQELLGHANVSTTMIYTHV 310 >gi|326943669|gb|AEA19562.1| site-specific tyrosine recombinase XerS [Bacillus thuringiensis serovar chinensis CT-43] Length = 332 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 116/287 (40%), Gaps = 52/287 (18%) Query: 58 ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117 + I T+ L E R F + + I R++ R+ S +KS KYL LN Sbjct: 43 VPISTLENLPLNEARTFQRYLQGEGIETRAINRTFSALKSLFKYL----------ALNTE 92 Query: 118 NLKKSNSLPRALNEKQAL-----------TLVDNVLLHTSHETKWID------------- 153 N + N + R + EK L V N++ + + ++ Sbjct: 93 NEQGENYISRNVMEKIELHKEKVDAAARADDVANMIFNEKDDVAFLQFLANDYGEMLKDI 152 Query: 154 ------------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 R+ AI+ L+ G GLR+SE SLT +I Q +++ KG+K V Sbjct: 153 SPKKYNFFQRDKERDIAIISLILGTGLRVSEVASLTISSINFRQGKVKVTRKGNKRSSVL 212 Query: 202 LLPSVRKAILEYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQL--RRYLGLP 257 S I EY + P N + L +GK V R I++L + Sbjct: 213 ATRSCLDDIQEYIKVRPSKYNCPQDEDLLFVTNYKGKYTQLTV--RAIQKLCDKYSSAFD 270 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + H LRH++AT+ DL ++ LGH + T IYTN+N++ Sbjct: 271 EKRSPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNE 317 >gi|320161568|ref|YP_004174792.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] gi|319995421|dbj|BAJ64192.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] Length = 292 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 68/301 (22%), Positives = 132/301 (43%), Gaps = 40/301 (13%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + WL+ E+ S +T++ Y D QF + + ++ + E RA++ Sbjct: 8 EAWLR----EQDRSDVTVRGYLADMSQFERWFEQTNGRGLRVEDVTPADVREYRAWLQT- 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILNMRNLKKSNSL-PRALNEKQALT 136 QK +++R L ++++ ++ + KI E N + + L P L + Sbjct: 63 -VQKASAATIRRRLMALRAYCRWGMAAGKI--ERNPTARLKMPREEKLSPGWLERSEQWR 119 Query: 137 LVD----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ- 191 LV + + + + R+ A++ L GLR+SEA ++ ++ + + +Q Sbjct: 120 LVREAERGIQAADTPARRRLAVRDWALVVFLLHTGLRVSEACAVEVSDVQMGERSGWVQV 179 Query: 192 --GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-----LNPGVFQ 244 GKG K R VPL R+A+ + + RG G+P + Q Sbjct: 180 RSGKGAKARKVPLNAEARRALKAWLE--------------ERG--GQPGRMFEMTVSGVQ 223 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 R + ++ R G+ + HTLRH+ A +L+ G L+ + ++LGH L+ T++Y + Sbjct: 224 RRLAEMGRRAGVEVHP--HTLRHTLAKNLVDAGVGLQEVAALLGHSSLNATRVYVTPGER 281 Query: 305 N 305 + Sbjct: 282 D 282 >gi|308063535|gb|ADO05422.1| integrase-recombinase protein [Helicobacter pylori Sat464] Length = 353 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 14/194 (7%) Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 N N LP LN ++ ++ + + + ARN ++ ++ G+R +EAL L Sbjct: 157 NQSAGNKLPTHLNNEELEKFLEGI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 214 Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231 ++ + T+ I+GKGDK R V L + S+ K L +L P +L LF Sbjct: 215 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLIERELYPVKNDL-----LFC 269 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290 +G L + + ++ + GL AH LRHSFAT L DL +Q LGH Sbjct: 270 NQKGNALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 329 Query: 291 RLSTTQIYTNVNSK 304 L+T++IYT+ + + Sbjct: 330 SLNTSRIYTHFDKQ 343 >gi|237717516|ref|ZP_04547997.1| phage integrase [Bacteroides sp. 2_2_4] gi|229453185|gb|EEO58976.1| phage integrase [Bacteroides sp. 2_2_4] Length = 343 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 72/305 (23%), Positives = 136/305 (44%), Gaps = 35/305 (11%) Query: 21 WLQNLEIE-----RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 WL+ IE R LS+ T SY R + +++ I I ++ I F+ Sbjct: 15 WLRPFLIEYLIVTRNLSRNTQMSYRDTFRMLVSYVSTLISIAIDNLKISDITTDVITKFL 74 Query: 76 SKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRK---ITTESNILNMRNLKKSNSLPRALNE 131 + K+ S L+ IK+F K+L + I ++ + + K + +++ Sbjct: 75 DYLEIERKVSVSSRNNRLAAIKAFAKFLAWKSPEHIDWCHHVSLIPSKKTEKRMITYMDK 134 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM----DDQST 187 + L D L ++ I +R+ I+ +Y G R+SE + + +++ Sbjct: 135 SEIEALADAPLKTCKYQG--IRSRDHVIILFMYNTGARVSEVIGVKVKDVAMPPKRGMPM 192 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLP---LFRGIRGKPLNPGVF 243 + + GKG K RI PL +++DL PF ++ +LP LF +P++ Sbjct: 193 VTLHGKGRKERICPLWE-------DFWDLLKPF---IDNKLPNDYLFLNRYNQPMSRFCI 242 Query: 244 QRYIRQLRRYLGLPLSTTA------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 I++ + + L + A H +RH+ ATHLL++G D+ +++ +GH + TT I Sbjct: 243 YEMIKKYSQDVILNHPSLANKRPSPHVIRHTTATHLLNSGADIDMVRNWMGHSSIDTTNI 302 Query: 298 YTNVN 302 Y ++ Sbjct: 303 YAEIS 307 >gi|319649924|ref|ZP_08004074.1| phage integrase family domain-containing protein [Bacillus sp. 2_A_57_CT2] gi|317398362|gb|EFV79050.1| phage integrase family domain-containing protein [Bacillus sp. 2_A_57_CT2] Length = 304 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 63/285 (22%), Positives = 128/285 (44%), Gaps = 13/285 (4%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q++L + E + ++ TL+SY+ Q FL TE ++ +++++ I+ FI Sbjct: 7 QDFLDDREF-KNVTPNTLESYKLIIGQLNDFL---TENEVV--NVQEVTPNHIKKFILHY 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE--KQALT 136 + + + L I++F Y+ + +I T++ ++ K+ + + KQ L Sbjct: 61 QKKGNNATTTNSKLQRIRAFFNYMIECEIITQNPAKKIKKAKEDIKIDVFTDYHIKQMLN 120 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 + E + R+ +I+ +L G G+R+SE +L ++ TL + GK K Sbjct: 121 YYRRI---KQREKAFYAYRDHSIIVILIGTGIRLSEMTALKWSDVDFQNHTLSVFGKNRK 177 Query: 197 IRIVPLLPSVRKAILEYYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 +P+ V K + Y C F N+ +F +PL P + ++L + + Sbjct: 178 RETMPITEKVVKELSAYKVYCEQFFGKENLHENIFTNRSSEPLTPDAVKNIFKRLSKIMN 237 Query: 256 LP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 + +AHT RH+F + G ++Q ++ H ++ T+ Y Sbjct: 238 FKDVRLSAHTFRHTFCQRCIHAGMSTFAVQRLMRHSSIAVTEKYA 282 >gi|326201175|ref|ZP_08191047.1| integrase family protein [Clostridium papyrosolvens DSM 2782] gi|325988743|gb|EGD49567.1| integrase family protein [Clostridium papyrosolvens DSM 2782] Length = 291 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 69/281 (24%), Positives = 123/281 (43%), Gaps = 49/281 (17%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T+ S+ D +F+ + A +K Q + Q E R F+ +K ++ R ++ Sbjct: 20 TISSFVSDVHEFVEWFAITYGKKFDCQVLEQ-DAREFRGFLLNILRRKPA--TINRKMAA 76 Query: 95 IKSFLKYLKKRKITTESNILNM-------RNLK-----KSNSLPRALNEKQALTLVDNVL 142 +KSF ++L ++ ++ + I + R +K + N L RA+ K Sbjct: 77 LKSFNQFLVEKGLSKDIPIAGLLLADPSDREIKTLERTEQNKLKRAIYAKG--------- 127 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI--------QGKG 194 + R+ AI LLY G+R+SE +SL+ +++ + I QGKG Sbjct: 128 ----------NKRDIAIYELLYNIGVRVSELVSLSLEDVHLTERNGNINYSYVIIRQGKG 177 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 K R PL R A+ EY + ++ +F G RG PL + +++ Sbjct: 178 SKYRECPLNAQARSALDEY-----LKIRVSSSDNIFIGQRG-PLGREAVDKILKKYCADA 231 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 G+ ++H +RH+F T L+ G L ++ + GH + TT Sbjct: 232 GID-RISSHVIRHTFCTRLIQEGVPLPTVSRLAGHSSVETT 271 >gi|89147596|gb|ABD62657.1| integrase [uncultured bacterium] gi|89147608|gb|ABD62663.1| integrase [uncultured bacterium] Length = 167 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 32/64 (50%), Positives = 43/64 (67%) Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + G Q +++ R G+ T HTLRHSFATHLL NG D+R++Q +LGH +STT I Sbjct: 103 VEEGALQLAMKKAVRASGIQKPATCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMI 162 Query: 298 YTNV 301 YT+V Sbjct: 163 YTHV 166 >gi|145301320|ref|YP_001144160.1| integrase/recombinase [Aeromonas salmonicida subsp. salmonicida A449] gi|142856097|gb|ABO92412.1| integrase/recombinase [Aeromonas salmonicida subsp. salmonicida A449] Length = 315 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 68/257 (26%), Positives = 120/257 (46%), Gaps = 26/257 (10%) Query: 58 ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK--------RKITT 109 I Q +R ++ IR + Q + D R+ + I ++L LK ++I T Sbjct: 52 IGFQNLRDCAWESIRRHHVQAVIQMLSDSD--RAPATINTYLAALKGVALEAWTMKQIDT 109 Query: 110 ES--NILNMRNLKKSNSLP--RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165 +S +I +R+++ S LP RAL + + L +K + R++AIL +L G Sbjct: 110 DSYQHIKQVRSVRGSR-LPNGRALEKHEVRALY--FTCENDRSSKGL--RDAAILAVLVG 164 Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC----PFDL 221 CGLR SE ++L + ++ LR+ GKG+K RI + + ++ + + P L Sbjct: 165 CGLRRSEVVALDMECVITRDQALRVLGKGNKERIAYVPDGAWQRLMRWVEEVRGEQPGSL 224 Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281 I+ F + + + + R GL H LR +FA+ +L NG D+ Sbjct: 225 FQRIR--RFDDVTAERMTDQAIYHILETRRIEAGLE-KFAPHDLRRTFASAMLDNGEDII 281 Query: 282 SIQSILGHFRLSTTQIY 298 +++ +GH ++TTQ Y Sbjct: 282 TVKDAMGHASVTTTQKY 298 >gi|315638502|ref|ZP_07893679.1| phage integrase family site-specific recombinase [Campylobacter upsaliensis JV21] gi|315481493|gb|EFU72120.1| phage integrase family site-specific recombinase [Campylobacter upsaliensis JV21] Length = 355 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 76/284 (26%), Positives = 134/284 (47%), Gaps = 32/284 (11%) Query: 36 LQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95 + +Y ++ +L FY +++ I + EI A I T + D S K + Sbjct: 74 VSTYFNPLKKLFDYLTFYKLH--SLKQIDEALIVEILASI----TGALSDASKKNYRIAV 127 Query: 96 KSFLKYL-KKRKITTESNILNMRNLK--------KSNSLPRALNE---KQALTLVDNVLL 143 +F +L ++ + ++++I ++ NLK + LP ++E K+ L VDN Sbjct: 128 MNFFDFLNRQNEEDSKAHIFDI-NLKNWAGVSGARGIKLPEFMSEDELKKFLEAVDNA-- 184 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVP 201 + K RN I+ ++ G+R+SEAL + ++I ++ +RI KG+K R+V Sbjct: 185 ----DFKANTIRNKLIIKIIIFTGIRVSEALHIKLKDISEEDGLYHIRIHAKGNKYRLVM 240 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLST 260 + + +L+ + L+ LF +G PL R + Q+ G+ Sbjct: 241 IKKELISTLLDNVKINY----LSQDSLLFVNKKGTPLTQAYVSRIVEQILFKAGIRKQKN 296 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 AH LRH+FAT L DL +Q LGH L+T++IYT+ +S+ Sbjct: 297 GAHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDSE 340 >gi|330468061|ref|YP_004405804.1| integrase family protein [Verrucosispora maris AB-18-032] gi|328811032|gb|AEB45204.1| integrase family protein [Verrucosispora maris AB-18-032] Length = 332 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 71/283 (25%), Positives = 119/283 (42%), Gaps = 22/283 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE-IRAFISK 77 + WL+N R LS+ T +Y D +L + + + + + Y + + + Sbjct: 27 EAWLRN----RRLSEHTRDAYRRDVANWLAWCTDRHLDPLRVNFLHVNEYARTLESTLVA 82 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN--LKKSNSLPRALNEKQAL 135 R + + ++ R LS + S+ +L K + + + + + + +S L + Sbjct: 83 RTGRPLTPATVARRLSALSSWYDFLVKLRAVDTNPVADADRPRVDRDHSATIGLTPDE-- 140 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNIMDDQSTLRIQGK 193 VD +L +T ARN A + LL GLR+ E AL +T ++R GK Sbjct: 141 --VDALLTAADADTGPTAARNRAAIALLADLGLRVGELVALDITDLGAERGHRSVRFVGK 198 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPLNPGVFQRYIR 248 G K R L PS A+ Y L +Q+ PL G L+ R +R Sbjct: 199 GGKARRRALTPSTAHAVDTY--LAQRAAAEGVQVNELTGPLLVTASGARLDRHSVFRLVR 256 Query: 249 QLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGH 289 +L R +P + H+LRH+FAT + G L +Q +GH Sbjct: 257 RLARSAQIPAWAHLSPHSLRHAFATTARAEGVPLEDVQDAMGH 299 >gi|163943259|ref|YP_001642489.1| site-specific tyrosine recombinase XerS [Bacillus weihenstephanensis KBAB4] gi|163865456|gb|ABY46514.1| integrase family protein [Bacillus weihenstephanensis KBAB4] Length = 368 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 74/332 (22%), Positives = 138/332 (41%), Gaps = 49/332 (14%) Query: 16 KERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFL-----AFYTEEKIT------IQT 62 KE+ W ++ +E + LS TL Y + FL +L A E +T I T Sbjct: 17 KEKMPWYIIEYIEEKTNLSPATLYGYLIEYEMFLQWLISSRLAVADGEVVTKIHEVPIDT 76 Query: 63 IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122 + L +++ F S Q +++ R+ S +KS YL RN+ Sbjct: 77 LEHLPLKQVKRFKSYLERQGNKTKAVIRTFSALKSLFYYLTSNTEDDNGECYFYRNVMAK 136 Query: 123 NSLPRA-LNEKQALTLVDNVLLHTSHETKWID-------------------------ARN 156 + + ++ + V+ H + + K++ R+ Sbjct: 137 MEIHKEKIDAAARAKEISEVIFHNNDDIKFMRFLSNEYEQMLQENAPGKLRFFKRDRERD 196 Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 AIL L+ G GLR+SEA SLT ++ +++ KGDK + + + EY + Sbjct: 197 IAILSLILGTGLRVSEAASLTISSVNFRTRYIKVVRKGDKKSAILATQTALDDVQEYLKV 256 Query: 217 ------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 CP D ++ + + ++G + ++ Q++ + R + H LRH++A Sbjct: 257 RAVRYKCPEDEDI-LFVTNYKGSYAQ-ISVNAIQKFTEKYTR--AFDEKKSPHKLRHTYA 312 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 T+ + DL + + +GH + TT +YTN++ Sbjct: 313 TNHYNENKDLVLLANQMGHNSMETTSLYTNID 344 >gi|88799619|ref|ZP_01115195.1| integrase/recombinase (XerC/CodV family) protein [Reinekea sp. MED297] gi|88777704|gb|EAR08903.1| integrase/recombinase (XerC/CodV family) protein [Reinekea sp. MED297] Length = 332 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 80/312 (25%), Positives = 132/312 (42%), Gaps = 63/312 (20%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ-LSYTEIRAFISKRRTQKIGDRS 87 RGL+ T ++Y ++++ F + + + +Q I L+Y + F S TQ + Sbjct: 31 RGLAYATEKTYLLWAKRYIRFSKYQSPKDFKLQDIDSFLNYLAQQRFCSPN-TQATALNA 89 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 L + + FL + ++ L+ K+ +P L++ +A ++ Sbjct: 90 L---ILLYREFLGF--------DTTGLDFNYAKRRPKIPTVLSKSEADAIIQE------- 131 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPS- 205 + + L+YG GLRISEAL+L ++I + ++ KGDK R LLPS Sbjct: 132 ----LGGVQKLVTQLMYGSGLRISEALNLRVKDIDFANGGLFVMEAKGDKSRRT-LLPSS 186 Query: 206 ----------------------------VRKAILEYYDLCPFDLNLNIQLP-------LF 230 + A+ + F+L P Sbjct: 187 LHQSLTSQIAFVEHTFEADQSIGKAGVYLPDALSRKWPNAQFELGWQYLFPSNVYSVDPR 246 Query: 231 RGI-RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289 G+ R ++ QR I++ + L + + HT RHSFAT LL G D+R+IQ ILGH Sbjct: 247 SGVERRHHISRDQVQRAIKRAVKGLKINKRVSCHTFRHSFATELLRQGTDIRNIQEILGH 306 Query: 290 FRLSTTQIYTNV 301 + TTQIYT+V Sbjct: 307 SSVETTQIYTHV 318 >gi|283479604|emb|CAY75520.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163] Length = 345 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 120/252 (47%), Gaps = 18/252 (7%) Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLVD 139 + + R+ + +L ++ + ++L K+ + + ++ + LPR L+ +Q +V+ Sbjct: 98 EPLSPRTQRTALQPLQVWFRWLAKQNLILANPAADLELPRLEKHLPRTILSVEQVEDIVN 157 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR 198 L+T R+ A+L LL+ G+R E L + + L I QGKG + R Sbjct: 158 LCDLNTLQ-----GMRDRALLELLWSTGIRRGEVARLETWSADFSRKILTIVQGKGKQDR 212 Query: 199 IVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLF---RGIRGKPLNPGVFQRYIRQLRRYL 254 ++P+ + Y +++ P + + LF G+ G N G+ + LR Sbjct: 213 VIPVGERALWWLRHYLHEVRPEIVAVAGCKALFVAMDGVAGLTAN-GITHAVVPYLR-AA 270 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ + RH+ AT +L NG DLR IQ++LGH + +TQ YT V+ + + ++ Sbjct: 271 GIE-KGSCXLFRHAMATQMLENGADLRWIQAMLGHRSVESTQXYTQVSIRA----LQAVH 325 Query: 315 DQTHPSITQKDK 326 THP+ +D+ Sbjct: 326 ASTHPAEQTEDE 337 >gi|317177489|dbj|BAJ55278.1| integrase-recombinase protein [Helicobacter pylori F16] gi|317177493|dbj|BAJ55282.1| integrase-recombinase protein [Helicobacter pylori F16] Length = 355 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/160 (32%), Positives = 81/160 (50%), Gaps = 12/160 (7%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPL----LPS 205 + ARN ++ ++ G+R +EAL L ++ + T+ I+GKGDK R V L + S Sbjct: 189 VHARNRLLIKIIVFTGMRSNEALQLKIKDFTLENGCYTILIKGKGDKYRAVMLKAFHIES 248 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHT 264 + K L +L P +L LF +G L + + ++ + GL AH Sbjct: 249 LLKEWLMERELYPVKNDL-----LFCNQKGSALTQAYLYKQVERIINFAGLRREKNGAHM 303 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 LRHSFAT L DL +Q LGH L+T++IYT+ + + Sbjct: 304 LRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQ 343 >gi|189036180|gb|ACD75440.1| AMDV4_11 [uncultured virus] Length = 210 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 20/165 (12%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----QGKG------DKIRIVPLLPSVRK 208 ++ LY G RI E L + P +I +++R+ QGK +K RI+PL +R Sbjct: 55 LVQFLYRTGARIDEVLIVKPSDINLGTNSIRMKTLKQGKDKNGIQREKYRIIPLHSELRD 114 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 A ++Y L +++ + PLF P++ V Y ++++ LG + AH RH+ Sbjct: 115 AYMQY--LLDMNISTKSEDPLF------PMSRQVVDLYFKKMQDKLGFKVH--AHKFRHT 164 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 FA + + L +Q LGH + TT IYT + + ++M I Sbjct: 165 FAVKAIMDNVPLNVLQQWLGHSSIFTTSIYTQITGMDTSEFMGRI 209 >gi|331091113|ref|ZP_08339955.1| hypothetical protein HMPREF9477_00598 [Lachnospiraceae bacterium 2_1_46FAA] gi|330405335|gb|EGG84871.1| hypothetical protein HMPREF9477_00598 [Lachnospiraceae bacterium 2_1_46FAA] Length = 353 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 73/296 (24%), Positives = 133/296 (44%), Gaps = 29/296 (9%) Query: 27 IERGLSKLTLQSYECDTRQFLIFL----AFYTEEKIT---IQTIRQLSYTEIRAF----- 74 IE S T SY D R F FL Y K+T + + +++ +I + Sbjct: 38 IEPTTSVKTRISYAYDIRIFFKFLLENNPVYKSYKMTDFQVSDLERIAPVDIEEYQEYLK 97 Query: 75 ISKRRTQKI--GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK-KSNSLPRALNE 131 + + ++I ++ L R +S ++SF Y K ++ ++ L + K ++ R + Sbjct: 98 VYQNEDKQITNAEKGLARKMSALRSFYNYYYKHQMIEKNPSLFVDMPKIHDKAIVRLDTD 157 Query: 132 KQALTL--VDNVLLHTSHETKWIDARNS----AILYLLYGCGLRISEALSLTPQNIMDDQ 185 + AL L V+N + + K +N AIL LL G G+R+SE + L +I Sbjct: 158 EVALLLEYVENCGNQLTGQKKVYYEKNKTRDLAILTLLLGTGIRVSECVGLDIPDIDFKN 217 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNP 240 + +++ KG +V P VRKA+++Y + + P + N LF + K + Sbjct: 218 NGIKVMRKGGNEMVVYFGPEVRKALIDYLETTRNTITPLPEHEN---ALFLSTQKKRMGV 274 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + +++ R + T H LR ++ T L GD+ + +LGH ++TT+ Sbjct: 275 QAVENMVKKYAREVTPNKKITPHKLRSTYGTSLYKETGDIYLVADVLGHRDVNTTK 330 >gi|169838713|ref|ZP_02871901.1| recombinase [candidate division TM7 single-cell isolate TM7a] Length = 222 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/212 (26%), Positives = 98/212 (46%), Gaps = 13/212 (6%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 +S IK+F K+ + + +R+LK+ P L ++ +VD S Sbjct: 5 VSAIKAFYKFCYLNRAVEKDPAGMVRSLKREYRSPEILTLEEIKKIVD------SCPNMP 58 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-STLRIQGKGDKIRIVPLLPSVRKAI 210 +N I+ L G RISE L+L +++ + + +++ GK K RIVP+ S+ I Sbjct: 59 EGMQNRLIIKFLIATGARISEILNLEIKDLENKKYEFIKVLGKDSKYRIVPIYDSLENEI 118 Query: 211 LEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 Y D+ P N N +F R + F + ++ + + G+ + H R+S Sbjct: 119 KNYLDVYRPKLKNANDSFKIFPNARREK-----FWKDLKNIAKNAGIEKNVYPHIFRYSL 173 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 A LL + D R +Q I G+ ++TT+ T+V Sbjct: 174 AEILLGDNADTRIVQEIFGYASITTTETCTHV 205 >gi|310813961|gb|ADP30788.1| IntI1 [Serratia rubidaea] Length = 313 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 75/302 (24%), Positives = 123/302 (40%), Gaps = 58/302 (19%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 33 TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 83 LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207 + LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191 Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +A + F + + P +R Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + FQR ++ G+ T HTLRHSFAT L +G D+R++Q +LGH +STT I Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATAFLRSGYDIRTVQDLLGHSDVSTTMI 311 Query: 298 YT 299 YT Sbjct: 312 YT 313 >gi|227529183|ref|ZP_03959232.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus vaginalis ATCC 49540] gi|227350908|gb|EEJ41199.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus vaginalis ATCC 49540] Length = 292 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 73/304 (24%), Positives = 143/304 (47%), Gaps = 24/304 (7%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI-TIQTIRQLSYTEIRAFISKR 78 +++ L ++G S+ T +SY D + AF+T I T Q + Q + + I++ Sbjct: 7 HFIDYLMTQKGRSQNTRESYRHDLERCA---AFFTASGINTWQEVDQYAVINV---IAEM 60 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRALNEKQALT 136 + + ++ R++S ++ +YL +R + N ++ +L++ + P L++++ Sbjct: 61 KREDRASTTINRTISSLRQLYRYLLRRH-EVQVNPMDYIDLEEVATRKAPVTLSQQEI-- 117 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L T R+ +L L+YG G+ +SE ++L + D L++Q Sbjct: 118 ---EQLFAIPDTTTVNGLRDRTLLELMYGTGMLVSELINLKRSQVHFDLQILQLQDNPRH 174 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 RIVPL ++ + Y D + + L RG G+ GV++ + +++ R GL Sbjct: 175 QRIVPLGKIAKEWLARYLRATAGDSSDYVFLNA-RG--GQMTRQGVWKNF-KEIVRKSGL 230 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILG-HFRLSTTQIYTNVNSKNGGDWMMEIYD 315 T TLRH+F LL NG +++Q++LG + + Y N++ ++ IY Sbjct: 231 SKKITLQTLRHTFTADLLKNGASWQAVQTLLGRETGRESFESYIRFNTQE----LVTIYR 286 Query: 316 QTHP 319 + HP Sbjct: 287 RCHP 290 >gi|223932948|ref|ZP_03624943.1| integrase family protein [Streptococcus suis 89/1591] gi|223898394|gb|EEF64760.1| integrase family protein [Streptococcus suis 89/1591] Length = 175 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 81/159 (50%), Gaps = 5/159 (3%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 RN ++ LL GLRISE +L NI + T++I KG K+R++ + ++LE Y Sbjct: 2 RNLLLISLLLSTGLRISELCNLKLDNINLENRTIQILEKGKKVRLLYIGNDETLSLLEDY 61 Query: 215 DLCPFDLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 + + LF ++ L + ++ + L L T H RHSFAT L Sbjct: 62 ----IAHHCSHSSYLFTSVKNDDHLKEQSVRLSLKNISHSLQLKKHITPHMFRHSFATML 117 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 L NG D+R IQ +LGH ++ TQIYT+V+ + + E Sbjct: 118 LDNGVDIRQIQHLLGHSNINVTQIYTHVSQSKQVEILSE 156 >gi|241992519|gb|ACS73597.1| IntI1 [uncultured bacterium] Length = 315 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 82/177 (46%), Gaps = 37/177 (20%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207 LLY G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 139 LLYRTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198 Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 +A + F + + P +R + FQ Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 R ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|300723172|ref|YP_003712470.1| integrase/recombinase [Xenorhabdus nematophila ATCC 19061] gi|297629687|emb|CBJ90293.1| Integrase/recombinase [Xenorhabdus nematophila ATCC 19061] Length = 338 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 77/151 (50%), Gaps = 13/151 (8%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R++AI+ +L GCGLR SE +SL ++I+ + LR+ GKG+K R+ + + + Sbjct: 177 RDAAIIGVLLGCGLRRSEIVSLDMKHIIRREQALRVMGKGNKERLSYMPEGTWDRLTRWV 236 Query: 215 DLCPFDLNLNIQLPLFRGIR-------GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 D D PLF IR + + ++ +I + RR H LR Sbjct: 237 DEVRGDH----AGPLFTRIRRHDDVTDNRLSDQAIY--HILETRRIESGVEKFAPHDLRR 290 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 +FA+ +L NG D+ +++ +GH ++TTQ Y Sbjct: 291 TFASAMLDNGEDIVTVKDAMGHSSITTTQKY 321 >gi|226366647|ref|YP_002784430.1| tyrosine recombinase [Rhodococcus opacus B4] gi|226245137|dbj|BAH55485.1| putative tyrosine recombinase [Rhodococcus opacus B4] Length = 307 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 66/281 (23%), Positives = 122/281 (43%), Gaps = 30/281 (10%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 S++T Q Y R FL +A + + QLS ++R++++ ++ +SLK Sbjct: 31 SEMTRQCYTRHARAFLNTVA----QSAAAVDLEQLSGPQVRSYVTDL-GERYAPQSLKLK 85 Query: 92 LSGIKSFLKY--LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 + ++ FL++ + + + + + +S +P+AL+ + + L+ HT T Sbjct: 86 ATALRIFLRFAWMSGQMSSDLTGAVGPVITHRSGKIPKALHPDELVRLLAAPDRHTLGGT 145 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 R+ A+L L+ G R E L +I + +R++ KG + +P+ V A Sbjct: 146 -----RDYALLVLMSRLGFRAGEVGGLRLDDIDWAHAKVRVRVKGGNVLELPIPGDVGSA 200 Query: 210 ILEYYDLCP--------FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 ++EY P F N +P+ RG + + + R GL + Sbjct: 201 LVEYLQRRPTPTPHREVFLTNYGAPVPMTRG---------AVTQVVERNARTAGLGM-VH 250 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 AH LRHS A +L GG + +LGH T Y++ + Sbjct: 251 AHRLRHSAARAVLVGGGTFEEVGELLGHATRQVTMAYSSFD 291 >gi|229092873|ref|ZP_04224007.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-42] gi|228690495|gb|EEL44278.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-42] Length = 204 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 94/182 (51%), Gaps = 12/182 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q ++ L+IER SK T+ SY+ D F+ F+ E+ I + ++Y ++R +++ Sbjct: 8 QLFVGYLQIERNYSKYTIASYQNDLEHFVQFM-----EREGISSFLDITYADVRLYLTTL 62 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTL 137 +K+ +S+ R +S ++S ++L R+ + N + +L KK S+P+ L ++ Sbjct: 63 HDEKLARKSVARKVSSLRSLYRFLM-REGYRKDNPFAIASLPKKELSIPKFLYAEEL--- 118 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 L S + RN A+L L+Y G+R+SE ++L +I T+ + GK K Sbjct: 119 --EELFEVSDTETPLGQRNQALLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKRKKT 176 Query: 198 RI 199 +I Sbjct: 177 KI 178 >gi|160875127|ref|YP_001554443.1| integrase family protein [Shewanella baltica OS195] gi|160875848|ref|YP_001555164.1| integrase family protein [Shewanella baltica OS195] gi|160860649|gb|ABX49183.1| integrase family protein [Shewanella baltica OS195] gi|160861370|gb|ABX49904.1| integrase family protein [Shewanella baltica OS195] gi|315267318|gb|ADT94171.1| integrase family protein [Shewanella baltica OS678] Length = 287 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 67/280 (23%), Positives = 131/280 (46%), Gaps = 29/280 (10%) Query: 33 KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS-LKRS 91 +++L+ Y TR ++ A + Q ++ ++ A+ ++ R+ LK Sbjct: 11 EISLRGYSARTRNAYLY-AITQLQHYANQPFDNITDEQLTAYFRYLNLERHHSRATLKLQ 69 Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 L+GI F +++ R T + ++ K+ + LP+ L+ + + +L H Sbjct: 70 LNGIHFFYEHVLGRDFTVQLSLP-----KRPHKLPQLLSCQD----IAALLCHCQ----- 115 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI 210 + + A+L L YGCGLR+SE + +I + L++ QGKG R+V + P++ + Sbjct: 116 -NLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGAYDRLVIISPTLLTLL 174 Query: 211 LEYY-DLCPFDLNLNIQLPLFRGIRGK---PLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 +Y+ P + LF PL+ F++ + + R + + H+LR Sbjct: 175 RQYWRAYHPVEW-------LFASTYHDVVYPLHESTFRKALAKAARLASITKPCSPHSLR 227 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 H++ATH L G L +Q+ LGH + +T+ Y + + + G Sbjct: 228 HAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPELG 267 >gi|254446471|ref|ZP_05059947.1| integron integrase subfamily [Verrucomicrobiae bacterium DG1235] gi|198260779|gb|EDY85087.1| integron integrase subfamily [Verrucomicrobiae bacterium DG1235] Length = 422 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 70/248 (28%), Positives = 107/248 (43%), Gaps = 53/248 (21%) Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150 + S + +++ KR+ ++ R ++ +P L+ + VD V +H Sbjct: 174 AFSALLFLFRHVLKRRFEGFEGVVRAR---RTKYIPVVLSRAE----VDAVFEQLTHP-- 224 Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLP----- 204 D L+YGCGLR+ E +++ ++ L + GKG K R VPL P Sbjct: 225 -FDLATR----LMYGCGLRLFEVVNVRVGSLNFGAGILTVHDGKGRKDRTVPL-PRCLMQ 278 Query: 205 ----SVRKAILEY-------YD--LCPFDLN-----LNIQLP-----------LFRGI-- 233 VR+ ++ +D P ++ L +LP L RG Sbjct: 279 DLERQVRRVRIQLGRDIEGGFDGVFMPGSMDRKGGSLAKELPWQWLFPYRKLTLVRGTEE 338 Query: 234 -RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 R + IR+ R +GL TAHT RHSFA+HLL D+R+IQ +LGH L Sbjct: 339 RRRYHAHEKKLGAAIREAARRVGLAKRVTAHTFRHSFASHLLEANYDIRTIQELLGHSSL 398 Query: 293 STTQIYTN 300 TT IYT+ Sbjct: 399 ETTMIYTH 406 >gi|297620069|ref|YP_003708174.1| integrase family protein [Methanococcus voltae A3] gi|297379046|gb|ADI37201.1| integrase family protein [Methanococcus voltae A3] Length = 320 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 66/294 (22%), Positives = 131/294 (44%), Gaps = 29/294 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W+ ER ++ + + D + +FLAF + T+ + +T+ ++ R Sbjct: 26 WIAQFREEREFDRIKENTIKSDISRLKVFLAFCKKLDKEPDTLNRSEFTKFFNYLENER- 84 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKI------TTESNILNMRNLKKSNSL-PRALNEKQ 133 K+G+ S+ + +K F + L+ E + +K +S+ + LNE Sbjct: 85 -KLGN-SVIQYFKLLKVFYRVLRLHNFKEFETECKERRRFSKFEVKHYDSIDSKILNE-- 140 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG- 192 ++ +L H S + R++ ++ +L+ G R+SE + +T ++ ++ RI+ Sbjct: 141 ---ILKAILQHRSRS----NLRDALMIRMLWDTGCRVSEVIGITYEDCDFKEAKFRIRNT 193 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG----VFQRYIR 248 K R V A+ EY +++N P+F+ IRG P+ G V++ + Sbjct: 194 KSSNERFVVCSSDTLNALKEY---VKYNVNTGNSDPIFQSIRGGPVRRGWLSQVYRNAVV 250 Query: 249 QLRRYLGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 +L+ +P + H+LRH A LL+ G + ++ LGH + TT Y + Sbjct: 251 KLKEQGKIPKNRRVVVHSLRHGRAVELLNKGVPIEVVKEYLGHSSIETTLFYAH 304 >gi|284031468|ref|YP_003381399.1| integrase family protein [Kribbella flavida DSM 17836] gi|283810761|gb|ADB32600.1| integrase family protein [Kribbella flavida DSM 17836] Length = 318 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 75/162 (46%), Gaps = 13/162 (8%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR--IQGKGDKIRIVPLLPSVRKAILE 212 R+ ++ L GLR +E LT ++ +R + GKG + R +P+ P + + I Sbjct: 139 RDVLVIALGLVAGLRSAEMRMLTADSLAGRPGEMRLHVHGKGSRDRSIPVEPIMERIIAA 198 Query: 213 YYDLCP--FD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL----PLSTTAH 263 Y D C F + +L L R G P+ G + ++ R+ GL P+ H Sbjct: 199 YLDSCARRFPRKRFGRSAKLLLDR--EGSPIGRGGLEYLVKSCYRWAGLHDRVPVGANLH 256 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 LRH+FAT L +G I ++LGH L+T+Q Y + Sbjct: 257 ALRHTFATRLAEDGATASEIMALLGHASLATSQNYIEATGRE 298 >gi|186474605|ref|YP_001863576.1| integrase family protein [Burkholderia phymatum STM815] gi|184198564|gb|ACC76526.1| integrase family protein [Burkholderia phymatum STM815] Length = 413 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 77/294 (26%), Positives = 134/294 (45%), Gaps = 23/294 (7%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 L + W N E+GL++ T+ Y R+ FL +Y ++ +R ++I A+ Sbjct: 121 LDDYCKWATN---EQGLAESTVGLY---ARRITRFLRWYGPGGRSLSEVR---VSDIDAY 171 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR---KITTESNILNMRNLKKSNSLPRALNE 131 ++ R Q G +++ ++ +++F ++ K + + I R N L Sbjct: 172 LAYERRQGWGRLTIRSAVDAMRAFFRFGGVSHWCKPSFAAAIQGPRIYSLEN-----LPA 226 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 A V V + + T D R A+L LL G+R SE L +I ++ LR++ Sbjct: 227 GPAWVDVSRVFA-SLNSTDPKDIRARAVLMLLSIYGMRASEVAKLRLDDIDWERDQLRVR 285 Query: 192 -GKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIR 248 K ++++ PLLPSV KAI++Y + P + + L L R PL+ G++ Sbjct: 286 RAKRRELQVYPLLPSVGKAIVDYLQHVRPRSAHREVFLILMSPFR--PLSAKGIYGVVSP 343 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 +L+ H LRH+ A L++ G L+ + LGH T+IYT V+ Sbjct: 344 RLKAADVHCAHHGPHALRHACAARLVAQGLSLKEVGDHLGHRSTRATRIYTKVD 397 >gi|317178966|dbj|BAJ56754.1| integrase-recombinase protein [Helicobacter pylori F30] Length = 355 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 14/194 (7%) Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 N N LP LN ++ ++++ + + ARN ++ ++ G+R +EAL L Sbjct: 157 NQSAGNKLPTHLNNEELEKFLESI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 214 Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231 ++ + T+ I+GKGDK R V L + S+ K L L P +L LF Sbjct: 215 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLIERKLYPVKNDL-----LFC 269 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290 +G L + + ++ + GL AH LRHSFAT L DL +Q LGH Sbjct: 270 NQKGSALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 329 Query: 291 RLSTTQIYTNVNSK 304 L+T++IYT+ + + Sbjct: 330 SLNTSRIYTHFDKQ 343 >gi|153871856|ref|ZP_02000919.1| Type 1 fimbriae Regulatory protein fimB [Beggiatoa sp. PS] gi|152071680|gb|EDN69083.1| Type 1 fimbriae Regulatory protein fimB [Beggiatoa sp. PS] Length = 178 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 79/174 (45%), Gaps = 7/174 (4%) Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIR 198 ++LL + ++K RN ++ L+Y LR+SEA+++T I T+ ++ KG Sbjct: 11 DLLLEATRKSKHYPQRNYCLVLLIYRHALRLSEAINMTWSQIDFANETIYVERIKGSVSG 70 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 PL P +E L + N LF R KPL Q I + G+ Sbjct: 71 THPLRP------VEIMALKLLKQDTNGSKHLFISQRNKPLGKRSVQHLIALFGQEAGIEF 124 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 H LRH+ L G D R IQ+ LGH + T IYT ++SK D+ +E Sbjct: 125 PVHPHMLRHACGYRLAKEGRDTRVIQAYLGHKDIRNTVIYTELSSKRFDDFFLE 178 >gi|228942857|ref|ZP_04105374.1| Integrase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228976751|ref|ZP_04137168.1| Integrase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228782964|gb|EEM31126.1| Integrase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816813|gb|EEM62921.1| Integrase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 375 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 78/339 (23%), Positives = 140/339 (41%), Gaps = 63/339 (18%) Query: 16 KERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFL----------AFYTE-EKITIQT 62 KE+ W ++ +E + LS TL Y + FL +L TE ++TI+T Sbjct: 24 KEKMPWYIIEYIEEKTNLSPATLYGYLIEYEMFLQWLISSRLATVDGKVVTEIHEVTIET 83 Query: 63 IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--- 119 + L +++ F S Q +++ R+ S +KS YL RN+ Sbjct: 84 LEHLPLKQVKRFKSYLERQGNKTKAVIRTFSALKSLFNYLTSNTEDDNGECYFYRNVMAK 143 Query: 120 -----KKSNSLPRALNEKQALTLVDNVLLHTSHETKWI---------------------- 152 +K +S RA + V+ H + + K++ Sbjct: 144 MEIHKEKIDSAARAKE-------ISEVIFHNNDDIKFMRFLSNEYEKMLQETAPGKLRFF 196 Query: 153 ---DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 R+ AIL L+ G GLR+SE SLT +I +++ KGDK + + Sbjct: 197 KRDKERDIAILSLILGTGLRVSETASLTISSINFRTRYIKVIRKGDKKSSILATQTALDD 256 Query: 210 ILEYYDL------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 + EY + CP D ++ + + ++G + ++ Q+ + R + H Sbjct: 257 VQEYLKVRANRYKCPDDEDI-LFVTNYKGSYAQ-ISVNAIQKLTEKYTR--AFDEKKSPH 312 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 LRH++AT+ + DL + + +GH + TT +YTN++ Sbjct: 313 KLRHTYATNHYNENKDLVLLANQMGHNSMETTSLYTNID 351 >gi|121591862|ref|ZP_01679033.1| site-specific recombinase IntI4 [Vibrio cholerae 2740-80] gi|121546269|gb|EAX56565.1| site-specific recombinase IntI4 [Vibrio cholerae 2740-80] Length = 79 Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 32/64 (50%), Positives = 44/64 (68%) Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 +N V Q+ +R+ + G+ + T HTLRHSFATHLL G D+R++Q LGH + TTQI Sbjct: 1 MNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQI 60 Query: 298 YTNV 301 YT+V Sbjct: 61 YTHV 64 >gi|71909039|ref|YP_286626.1| integron integrase [Dechloromonas aromatica RCB] gi|71848660|gb|AAZ48156.1| Integron integrase [Dechloromonas aromatica RCB] Length = 327 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 97/224 (43%), Gaps = 48/224 (21%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 K+ LP L ++ L+D + + + LLYG G+R+ E + L + Sbjct: 106 KQPQRLPVVLTRQEIAALLDR-----------MSGLHGLMARLLYGTGMRLMECVRLRVK 154 Query: 180 NIMDDQSTLRIQ-GKGDKIRIV--------PLLPSVR--------------------KAI 210 ++ +++ + ++ GKG K R+ PL +R A+ Sbjct: 155 DVDFERAEIVVRDGKGAKDRVTMLPRTLIEPLQDHLRWRRTCYEDDLARGKASVYLPNAL 214 Query: 211 LEYYDLCPFDLNLNIQLPLF-------RGI-RGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 Y D P G+ R L+ QR +++ + G+ T Sbjct: 215 DRKYPNAETDWAWQYIFPAAGYSIDPRSGVERRHHLDEKALQRAVKKALQASGIAKLATP 274 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 HT RHSFATHLL +G D+R++Q +LGH ++TT IYT+V +K G Sbjct: 275 HTFRHSFATHLLQSGYDIRTVQELLGHADVTTTMIYTHVLNKGG 318 >gi|325261264|ref|ZP_08128002.1| integrase/recombinase [Clostridium sp. D5] gi|324032718|gb|EGB93995.1| integrase/recombinase [Clostridium sp. D5] Length = 340 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 69/223 (30%), Positives = 107/223 (47%), Gaps = 25/223 (11%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALTLVDNVLLHTSHET 149 L+ I+++L Y+ I+ +S L ++ K L R + K L LL +T Sbjct: 90 LAAIRAYLWYVADGDISLQSVALTASHVPFLKVPKLTREMIFKDDL----KALLSAPPDT 145 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPS-- 205 K I R+ IL LLY +R+SE LSL ++ D LRI GKGDK RIV + + Sbjct: 146 K-IGRRDQMILILLYDSAVRVSELLSLDVSSVNLDAEIPYLRIYGKGDKERIVAITDTTA 204 Query: 206 --VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP--LNPG----VFQRYIRQLR-RYLGL 256 +R + YY D L ++ I+G+ ++ G + ++Y ++R + L Sbjct: 205 GHIRNYLKAYYPTRVPDSPL-----IYTVIKGRKDRMSVGNVERIIKKYASKIRPEHPNL 259 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 P H +R + AT+L +G +L I ILGH TT+IY Sbjct: 260 PEHCYPHMVRRTRATNLYQDGTELELISRILGHSSTETTRIYA 302 >gi|293569425|ref|ZP_06680722.1| putative integrase/recombinase [Enterococcus faecium E1071] gi|291587951|gb|EFF19802.1| putative integrase/recombinase [Enterococcus faecium E1071] Length = 201 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 7/161 (4%) Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 H+ ++T++ + R+ +L +L GLRI+E ++L +I + + + GKG K RIV Sbjct: 20 HSGYQTRFTNQRDYLLLLILIDTGLRINEVMNLKDVHITNKELFVE-NGKGKKDRIVHCS 78 Query: 204 PSVRKAILEYYDLCP--FDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--P 257 P + K ++Y + F+ N NI +F GK N + +R I ++ + Sbjct: 79 PLIYKEYIKYKRVANSFFEYNEIENIDNYVFLTREGKQYNYILAERAIIKIGNQCEIRKS 138 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + + H+ RH FA L+ NG D+ IQ +LGH + TT++Y Sbjct: 139 IRVSPHSFRHYFAQKLVRNGTDIYRIQKLLGHASIKTTEVY 179 >gi|332994822|gb|AEF04877.1| phage integrase family site-specific recombinase [Alteromonas sp. SN2] Length = 305 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 105/230 (45%), Gaps = 21/230 (9%) Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPRALNEKQALTLVDNVL 142 RS+ R+++ I++ +K IT E L ++ + K N L+ KQ V+ + Sbjct: 67 RSINRAMTAIRNIVKVAVLSGITDEMQALQLQTITKVKHGNHRGTPLSSKQ----VEKLF 122 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVP 201 + S I R+ AI LL G GLR SE ++L + D TL I QGKG+K R V Sbjct: 123 VTLSKNHSLIGIRDHAIFALLLGTGLRRSELVTLMYADYSPDFQTLFIRQGKGNKSRTV- 181 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLF-RGIRG------KPLNPGVFQRYIRQLRRYL 254 LP +L + + +I PLF R RG PL+ IR Sbjct: 182 YLPHWSNDLLMDW----VQIRGSICGPLFLRIARGGHIQPDSPLSTSFIYSLIRSTLASH 237 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 G+ + H LR +F T LL DL +++ + GH ++TT IY + K Sbjct: 238 GIE-GVSPHDLRRTFITRLLEQNVDLNTVRQMAGHADIATTIIYDKRHEK 286 >gi|153810889|ref|ZP_01963557.1| hypothetical protein RUMOBE_01273 [Ruminococcus obeum ATCC 29174] gi|149833285|gb|EDM88367.1| hypothetical protein RUMOBE_01273 [Ruminococcus obeum ATCC 29174] Length = 280 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/239 (24%), Positives = 111/239 (46%), Gaps = 18/239 (7%) Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK-ITTESNILNMRNLKKSNSLPRAL 129 ++ + S +T+ G+R LKR +S ++SF Y KR+ I T +L S+ R Sbjct: 24 LKLYQSGDKTETNGERGLKRKISALRSFYAYYYKREMIHTNPTVLIDVPKIHEKSIIRLD 83 Query: 130 NEKQALTLVDNVLLH-----TSHETKWID---ARNSAILYLLYGCGLRISEALSLTPQNI 181 ++ A+ L + + H T + + + R+ AI+ LL G G+R+SE + L +++ Sbjct: 84 TDEVAMLL--DYIEHCGDTLTGQKRVFYEKTKERDLAIVTLLLGTGIRVSECVGLDIEDV 141 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKP 237 + +++ KG +V P V KA+ Y + + P + LF + K Sbjct: 142 DFKNNGIKVTRKGGNEMVVYFGPEVEKALKRYLEVREGITPL---AGHEHALFYSAQRKR 198 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + + +++ R + T H LR ++ T L GD+ + +LGH ++TT+ Sbjct: 199 MGVQAVENMVKKYSRQITTTKKITPHKLRSTYGTALYQETGDIYLVADVLGHKDVNTTK 257 >gi|241992505|gb|ACS73587.1| IntI [uncultured bacterium] Length = 312 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 83/180 (46%), Gaps = 37/180 (20%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--------IVPLLPSVRK- 208 + LLYG G+R+ E L L +++ ++ + + +GKG+K R I+PL ++K Sbjct: 133 VASLLYGTGMRLLEGLRLRVKDVEFERREIIVREGKGNKDRVTVLPENLILPLQAHLKKV 192 Query: 209 -------------------AILEYYDLCPFDLNLNIQLP-LFRGI-------RGKPLNPG 241 A+ + Y P R + R L Sbjct: 193 KALHERDLEAGFGEVYLPDALAKKYPKAGRAWGWQFVFPSTVRSVDPRSGIERRHHLYEA 252 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 QR +R+ + + + HTLRHSFATHLL +G D+R++Q +LGH +STT IYT+V Sbjct: 253 SVQRAVREAAKLAEIIKPVSPHTLRHSFATHLLQSGYDIRTVQELLGHSDVSTTMIYTHV 312 >gi|86741040|ref|YP_481440.1| phage integrase [Frankia sp. CcI3] gi|86567902|gb|ABD11711.1| phage integrase [Frankia sp. CcI3] Length = 322 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 73/151 (48%), Gaps = 7/151 (4%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKG---DKIRIVPLLPSVRK 208 R+ I+ LLY G+R +E ++L ++ T + GKG K R +P P R+ Sbjct: 155 RDRTIIELLYNTGVRCAELVALDLDDVPVTARTGAVHVRAGKGRDGGKPRTIPANPRARR 214 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 A+ ++ N LF G+ L+ + + L R +G+ T H LRH+ Sbjct: 215 ALTDWKPARAAWPNAEADPALFLNRYGRRLSTRTVDQVVADLGRSVGID-DLTPHVLRHT 273 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 FAT +L G DL + +LGH R TT++YT Sbjct: 274 FATAMLRRGADLVLVAELLGHARTDTTRVYT 304 >gi|86150256|ref|ZP_01068483.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597569|ref|ZP_01100803.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni 84-25] gi|218562491|ref|YP_002344270.1| DNA recombinase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85839372|gb|EAQ56634.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190161|gb|EAQ94136.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni 84-25] gi|112360197|emb|CAL34991.1| DNA recombinase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926106|gb|ADC28458.1| DNA recombinase [Campylobacter jejuni subsp. jejuni IA3902] gi|315926491|gb|EFV05873.1| phage integrase family protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 354 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 75/273 (27%), Positives = 130/273 (47%), Gaps = 33/273 (12%) Query: 45 QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK 104 ++L F Y+ ++I + I E+ A I T + D S K + +F +L K Sbjct: 85 EYLNFYKLYSLKQIDEELI-----VEVLASI----TGALSDASKKNYRIAVINFFDFLDK 135 Query: 105 RKITTESNILNMRNLK--------KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156 + E + NLK K LP +++++ +D + + + K RN Sbjct: 136 QNEEDEKAHIFDINLKNWAGIAGSKGVKLPEFMSKEELKKFLDAI---ENADFKNNTIRN 192 Query: 157 SAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 I+ ++ G+R+SEA+++ +I + D +RI+ KG+K R+V ++K ++ Y Sbjct: 193 KLIIKIIIFTGIRVSEAINIKMGDISEENDLYIIRIRAKGNKYRVV----MIKKELI--Y 246 Query: 215 DLCPFDLNLNI---QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFA 270 DL ++++N LF +G PL R + QL G+ AH LRH+FA Sbjct: 247 DLLK-NVSINYISKDALLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHMLRHTFA 305 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 T L DL +Q LGH L+T++IYT+ ++ Sbjct: 306 TLLYKKQKDLVLVQEALGHASLNTSRIYTHFDN 338 >gi|330902727|gb|EGH33740.1| hypothetical protein PSYJA_34455 [Pseudomonas syringae pv. japonica str. M301072PT] Length = 206 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/179 (31%), Positives = 86/179 (48%), Gaps = 11/179 (6%) Query: 130 NEKQALTLVDN---VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 NE + L D+ LL ET R+ A+L +L GLR EA L +I + + Sbjct: 19 NEGKTPALGDHQAKALLEAPDETTLKGQRDRALLAVLLYHGLRREEAALLQVSDIQERRG 78 Query: 187 T--LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 L++ GKG K+R +PL P I +Y + L ++PLF +RGK G+ Sbjct: 79 IQHLKVHGKGGKVRYLPLHPIAAGRIHQYLENSEHHL-AERKVPLFMPLRGKLTGAGITA 137 Query: 245 RYIRQL----RRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 I + + G+ + H LR + AT+ L + D+ +Q+ LGH +STT+IY Sbjct: 138 NGIYAVVTAYAKKAGIEVDGLGVHGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 196 >gi|30908742|gb|AAP37603.1| IntI [uncultured bacterium] Length = 161 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/64 (48%), Positives = 44/64 (68%) Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 ++P Q+ ++ R +P + HTLRHSFATHLL +G D+R+IQ +LGH +STT I Sbjct: 98 VSPSSLQKVFKEALRKTRIPKNAGPHTLRHSFATHLLQDGYDIRTIQDLLGHKEISTTMI 157 Query: 298 YTNV 301 YT+V Sbjct: 158 YTHV 161 >gi|228911572|ref|ZP_04075361.1| Integrase [Bacillus thuringiensis IBL 200] gi|228848075|gb|EEM92940.1| Integrase [Bacillus thuringiensis IBL 200] Length = 364 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 75/332 (22%), Positives = 138/332 (41%), Gaps = 49/332 (14%) Query: 16 KERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFL-----AFYTEE------KITIQT 62 KE+ W ++ +E + LS TL Y + FL +L A E ++TI+T Sbjct: 17 KEKMPWYIIEYIEEKTNLSPATLYGYIIEYEMFLQWLLSSRLAVADGEVVTKIHEVTIET 76 Query: 63 IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN-LKK 121 + L +++ F S Q +++ R+ S +KS YL RN + K Sbjct: 77 LEHLPLKQVKRFKSYLERQGNKTKAVIRTFSALKSLFHYLTSNTEDDNGECYFYRNVMAK 136 Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWID-------------------------ARN 156 ++ + V+ H + + K++ R+ Sbjct: 137 VEIHKEKIDAAARAKEISEVIFHNNDDIKFMRFLSNEYEQMLQETAPGKLRFFKRDRERD 196 Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 AIL L+ G GLR+SEA +LT +I +++ KGDK + + + EY + Sbjct: 197 IAILSLILGTGLRVSEAANLTISSINFRTRYIKVVRKGDKKSSILATQTALDDVQEYLKV 256 Query: 217 ------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 CP D ++ + + ++G + ++ Q+ + R + H LRH++A Sbjct: 257 RAVRYRCPDDEDI-LFVTNYKGAYAQ-ISVNAIQKLTEKYSR--AFDEKKSPHKLRHTYA 312 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 T+ + DL + + +GH + TT +YTN++ Sbjct: 313 TNHYNENKDLVLLANQMGHNSMETTSLYTNID 344 >gi|89147408|gb|ABD62564.1| integrase [uncultured bacterium] Length = 163 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 47/69 (68%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 +R + + QR +++ R +G+ + HTLRHSFATH+L +G D+R+IQ +LGH + Sbjct: 94 VRRHHTSEDMLQRAVKRAVRQVGISKRVSCHTLRHSFATHMLESGYDIRTIQELLGHRSV 153 Query: 293 STTQIYTNV 301 TTQIYT+V Sbjct: 154 ETTQIYTHV 162 >gi|255527476|ref|ZP_05394346.1| integrase family protein [Clostridium carboxidivorans P7] gi|296187574|ref|ZP_06855969.1| phage integrase [Clostridium carboxidivorans P7] gi|308390320|ref|YP_003933773.1| putative integrase/recombinase [Clostridium carboxidivorans P7] gi|255508819|gb|EET85189.1| integrase family protein [Clostridium carboxidivorans P7] gi|296048096|gb|EFG87535.1| phage integrase [Clostridium carboxidivorans P7] gi|308066827|gb|ADO12131.1| putative integrase/recombinase [Clostridium carboxidivorans P7] Length = 295 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 125/288 (43%), Gaps = 56/288 (19%) Query: 26 EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85 +I+ G T++ Y D QF+ +L + I + EI F K + + Sbjct: 36 KIDEGKRTETIKGYFNDLIQFIRYLEIKGVDLFNIDS------KEIELFKGKMLRRGLKP 89 Query: 86 RSLKRSLSGIKSFLKYL----KKRKITTES-NILNMRNLKKSNSLPRALNEKQALTLVDN 140 +S+ R L+ I FLK + K RKI +S N LN + R E+ + N Sbjct: 90 KSINRKLTSINQFLKSIDSQVKFRKIKEQSQNFLN-------DVFTREEIER-LIKCCSN 141 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 + R+ AI+ L+ G+R+SE L L +++ + ++ I+GKG K R + Sbjct: 142 I-------------RDKAIISTLWKTGIRVSELLQLKVRDV--GKESIDIEGKGGKHRDI 186 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYI------RQLR 251 + + K + EY L + I +P LF G RG L G + I ++R Sbjct: 187 LISNELNKLLKEY-------LKVRISVPGNELFTGKRG-ALKRGAINKIILKYAKLAKIR 238 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 + P H+ RH+F L NG + I + GH L TT+IYT Sbjct: 239 KEKAHP-----HSFRHAFCKALADNGVSIDIIADLAGHKSLDTTRIYT 281 >gi|134298789|ref|YP_001112285.1| phage integrase family protein [Desulfotomaculum reducens MI-1] gi|134051489|gb|ABO49460.1| phage integrase family protein [Desulfotomaculum reducens MI-1] Length = 294 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 68/271 (25%), Positives = 129/271 (47%), Gaps = 15/271 (5%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 S LT+ Y+ + +F +L E + T + + + ++ + QK ++ R Sbjct: 15 SPLTVAGYQTELEKFQQWLWTTVNEPLERAT--DMDVKDYKQYLLTVKKQKPS--TVNRG 70 Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 L ++ + + + + + N++ ++ + P+ L+ A L VL + Sbjct: 71 LKVLRKYYSWAVIQGLIQYNPAANVKLVRVQQAAPKWLDRIDAARLKRAVL--NDEHNAF 128 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRI-QGKGDKIRIVPLLPSVRK 208 AR+ AIL L+ G GLR++E +L +I+ + + T+ + +GKG+K VPL VR+ Sbjct: 129 KRARDYAILLLMLGAGLRVAEVAALELADIIMSERKGTVIVRKGKGNKYAEVPLNKDVRQ 188 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG-LPLSTTAHTLRH 267 A+ EY D+ + + LF G RG P+ Q ++ +Y G + +AH LRH Sbjct: 189 ALNEYLDIRK-TVKCSDSTFLFLGERG-PIKKRAIQF---RVEKYAGKSSVKASAHQLRH 243 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 +F L+++G L + + H ++TT Y Sbjct: 244 TFCKELINHGEPLNVVAHLSRHSDVNTTMRY 274 >gi|223369842|gb|ACM88790.1| integrase [uncultured bacterium] Length = 163 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/60 (53%), Positives = 42/60 (70%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 V Q +++ R G+ T HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 103 VLQVAVKRAVRASGVNKPATCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|322435609|ref|YP_004217821.1| integrase family protein [Acidobacterium sp. MP5ACTX9] gi|321163336|gb|ADW69041.1| integrase family protein [Acidobacterium sp. MP5ACTX9] Length = 414 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 78/291 (26%), Positives = 128/291 (43%), Gaps = 29/291 (9%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L + RGL+ T + Y FL + + + ++ I S +++ FI +R Sbjct: 130 LSVVRGLAPETTRIYRTRVSHFL---EWALDRRASLSVI---SLSDVDDFILMKRASGYL 183 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD-NVLL 143 RS+ I+ F +Y ++R LN+R +PR L+ + T D L+ Sbjct: 184 PRSIVSFCGAIRMFFRYAEERGWNNSHIPLNLRG----PHIPRYLSAPKGPTWKDVRRLI 239 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL 202 + ET ++ R +AILYL GLR SE + L + T + + K +++ P+ Sbjct: 240 NNKTETP-VELRATAILYLCSIYGLRSSEVVGLRLSDFNWVSETFVVHRAKRGRVQQFPI 298 Query: 203 LPSVRKAILEYYD------LCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 V +AIL Y +C N+ + L P +R +R L G+ +++L G Sbjct: 299 QFEVGEAILGYLQRGRPQCVC---RNVFVTLRPPYRTVRATTLW-GIAADRMKKL----G 350 Query: 256 LPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + H LRHS AT LL G L+ I LGH + + IY + K+ Sbjct: 351 ITSENYGGHALRHSCATELLRRGSSLKDIADFLGHRDMRSVSIYAKYDLKS 401 >gi|149195410|ref|ZP_01872494.1| Integrase [Caminibacter mediatlanticus TB-2] gi|149134460|gb|EDM22952.1| Integrase [Caminibacter mediatlanticus TB-2] Length = 315 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 87/172 (50%), Gaps = 13/172 (7%) Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TL 188 EK L L++ + L S+ T RN+ I+YLL G R+SE ++L +I ++ L Sbjct: 135 EKIQLALINKLNLTKSYTT----FRNAFIVYLLSLTGARVSEIINLKNDDIKENGEFFYL 190 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRY 246 ++ GKG+K RIVP+ LE N+N + LP +G + + Q + Sbjct: 191 KLTGKGNKERIVPIEKDYIIDFLEKLQELKDKDNINSEYFLPDKQGYKTAITS---IQSF 247 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + L + LG+ H RH+FAT LL G D+ +I+ +LGH + TT Y Sbjct: 248 NKTLLKNLGIK--GNIHQYRHTFATILLEKGVDINTIKELLGHSSIQTTASY 297 >gi|331270786|ref|YP_004397223.1| integrase/recombinase [Clostridium botulinum BKT015925] gi|329127504|gb|AEB77447.1| integrase/recombinase [Clostridium botulinum BKT015925] Length = 272 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 69/279 (24%), Positives = 127/279 (45%), Gaps = 39/279 (13%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 S+ T+ +Y+ D ++F+ ++ + K+ I TI + + + +++ R+ Sbjct: 18 SEKTIYTYKNDIKRFV---KYFEKNKLEITTINMRKFKDYLL-----EVLLLSPKTVNRN 69 Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 + I+ FL+YL I + M ++ L L +A+ ++ K Sbjct: 70 IIAIRQFLEYLHINNID-----IKMIKIQDQGFLDDILTNDEAIRMI-------KETEKA 117 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211 D R A + LY G+R+SEA+S+ ++I +D ++RI GKG K R V L+P K I Sbjct: 118 RDLRAKAFICTLYYTGMRVSEAISVLSKDINED--SIRILGKGRKYRDV-LIPKKLKKIW 174 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY--IRQLRRYLGLPL----STTAHTL 265 + Y + +N LF G G R+ + +++Y G+ H Sbjct: 175 KDY----MTVRINNSDKLFTG------REGGISRFTALNIVKKYGGMAKIKKDKVYNHAF 224 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 RH + +L+ G + +++ + GH +STT IYT + K Sbjct: 225 RHLYCINLVDRGIPIDAVKDLAGHENISTTTIYTRKSKK 263 >gi|171057464|ref|YP_001789813.1| integrase family protein [Leptothrix cholodnii SP-6] gi|170774909|gb|ACB33048.1| integrase family protein [Leptothrix cholodnii SP-6] Length = 339 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 78/307 (25%), Positives = 131/307 (42%), Gaps = 21/307 (6%) Query: 7 PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66 P SF L + + ++L +R LS T+ +Y FL F + T ++ L Sbjct: 9 PAPPSFATLVQ-SFFAEHLTQQRALSPQTVAAYRDAFVLFLDFAQARLHKTPTTLSLADL 67 Query: 67 SYTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 + I F+ R + RS L+ ++SFLK+ +R +T ++ ++ + + Sbjct: 68 TPALILDFLDHLERDRHNTVRSRNARLAALRSFLKFAARRDVTA------LQVVEHALGV 121 Query: 126 PRALNEK---QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI- 181 P E+ + LT + + + + W+ R+ +L LLY G R+SE + + ++ Sbjct: 122 PMKRFERPMFEFLTREEMLAVIGAPGADWVSQRDKLLLALLYNTGARVSEVIGVKVGDVV 181 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-P 240 + + + + GKG K R VPL S K I + P L L G+ + Sbjct: 182 LAPAACVHLHGKGRKQRSVPLWRSTVKVIRAWLRFNP---ELTPTSALLPNRSGQAMTRS 238 Query: 241 GVFQRYIRQLRRYLGLPLS-----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 V QR ++ S + H LRHS A HLL +G D+ I LGH +TT Sbjct: 239 NVTQRLALAVKAAALTTPSLAGRTISPHCLRHSTAMHLLQSGVDISVIALWLGHESPATT 298 Query: 296 QIYTNVN 302 Y + Sbjct: 299 HQYVEAD 305 >gi|223369846|gb|ACM88792.1| integrase [uncultured bacterium] Length = 163 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/74 (44%), Positives = 46/74 (62%) Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 PL R +R L+ QR + + R G+ T HT RHSFATHL+ +G D+R++Q +L Sbjct: 89 PLSREMRRHHLHVSAVQRAVTEAVRGSGITKRATCHTFRHSFATHLIEDGYDIRTVQELL 148 Query: 288 GHFRLSTTQIYTNV 301 GH + TT IYT+V Sbjct: 149 GHADVRTTMIYTHV 162 >gi|110802062|ref|YP_699092.1| tyrosine recombinase XerD [Clostridium perfringens SM101] gi|110682563|gb|ABG85933.1| tyrosine recombinase XerD [Clostridium perfringens SM101] Length = 290 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 60/286 (20%), Positives = 135/286 (47%), Gaps = 18/286 (6%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L+ + + +L+++ G K T+ +Y D ++L F E+ + + + SY I Sbjct: 3 DLVSKYEVYLESI----GKRKNTVSAYITDVS---MYLDFVYEKGLKVS---EDSYPLI- 51 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 +++ + S++R++ +++F +L + + L M+ + P L + Sbjct: 52 SYVQHLKESHKSPSSIQRTIISLRNFYNFLVAEEFLKKVPNLTMKKERIEKKKPLVLTVE 111 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + N ++++++ R+ A+L L+Y G+++SE +SL ++I D S + + Sbjct: 112 EI-----NKIMNSTNVLTEKGIRDKALLELMYATGMKVSELISLRIEDINLDSSFVNCRD 166 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 R++P+ +++I Y + + N LF + G+P+ R +++ Sbjct: 167 SRGYERLIPIGKEAKESIKRY--IVVREDNSKGSDKLFLNMSGEPITRQGVWRIVKEYAV 224 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + +T RHSFA HLL NG + + +Q +LG+ ++ +Y Sbjct: 225 IANIGKDINLNTFRHSFAVHLLQNGANAKVVQELLGNQVMTYIDMY 270 >gi|89147466|gb|ABD62593.1| integrase [uncultured bacterium] Length = 163 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 35/68 (51%), Positives = 42/68 (61%) Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R L+ V QR ++ R + T HTLRHSFATHLL G D+RSIQ +LGH L Sbjct: 95 RRHHLHESVIQRNVKSAAREAQISKRVTTHTLRHSFATHLLEAGYDIRSIQELLGHADLK 154 Query: 294 TTQIYTNV 301 TT IYT+V Sbjct: 155 TTMIYTHV 162 >gi|149908948|ref|ZP_01897607.1| site-specific recombinase, phage integrase family [Moritella sp. PE36] gi|149807959|gb|EDM67902.1| site-specific recombinase, phage integrase family [Moritella sp. PE36] Length = 288 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/221 (24%), Positives = 107/221 (48%), Gaps = 19/221 (8%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 +LK L+GI +++ R T + K+ LP+ L ++ + V+ + Sbjct: 65 TLKLHLNGIHFLFEHVLHRSFTISVCLP-----KRKEKLPQLLTQQD----ISAVIYYCK 115 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS 205 ++ A++ L YGCGLR+SE + +I + L++ QGKG K R+V + P Sbjct: 116 ------TNKHRAMVALCYGCGLRVSELTHVKVSDIDGQRQLLKVCQGKGAKDRLVIISPV 169 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + + + +Y+ + + + + G+ P++ F++ + + G+ + H+L Sbjct: 170 LLQFMRQYWQ--QYHPDTWLFGSRWHGVI-YPIHESTFRKGLTCAAKKAGITKPCSPHSL 226 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 RH++ATH L G L +Q LGH + +T+ Y + + + G Sbjct: 227 RHAYATHQLQAGMPLNQLQQQLGHQSIQSTERYLHWSPELG 267 >gi|331697264|ref|YP_004333503.1| integrase family protein [Pseudonocardia dioxanivorans CB1190] gi|326951953|gb|AEA25650.1| integrase family protein [Pseudonocardia dioxanivorans CB1190] Length = 331 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 76/299 (25%), Positives = 125/299 (41%), Gaps = 55/299 (18%) Query: 48 IFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG--------------DRSLKRSLS 93 +F +E + T +I AFI+ +R + G R++KR L+ Sbjct: 33 VFFTVVRKEPAAVVT------ADIFAFITAQRAPRRGVKVVRLEDGEAGLSARTIKRRLA 86 Query: 94 GIKSFLKYLKKR------KITTESNILNMRN--------LKKSNSLPRALNEKQALTLVD 139 + YL R + S + R L+ +LPR L + VD Sbjct: 87 SVSGLFGYLMTRDDVAVDRNPVPSGLAGRRQGATRGAPLLRTPRTLPRVLGPDE----VD 142 Query: 140 NVL--LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196 VL L+T D + +L +L G GLR E L+L ++ + + I +GKG Sbjct: 143 AVLRVLNT-------DRDRAMVLAMLLG-GLRRCEVLALRLPDLSPGERRVFIAEGKGGH 194 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLG 255 R+VP+ A+ EY D ++ + + RG RG+PL + R G Sbjct: 195 QRLVPVSAQFFAAVGEYLDRERPAVDHDRLFVVLRGPTRGRPLTAAGLDEIVHGARWRAG 254 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 LP T H LRH+ T L G L ++Q+ GH + +T++Y ++ + W+++ Y Sbjct: 255 LP-KLTCHQLRHTCLTRLREAGMALEAVQAQAGHRSIESTRVYLHLANA----WLVQQY 308 >gi|160874309|ref|YP_001553625.1| integrase family protein [Shewanella baltica OS195] gi|217972349|ref|YP_002357100.1| integrase family protein [Shewanella baltica OS223] gi|160859831|gb|ABX48365.1| integrase family protein [Shewanella baltica OS195] gi|217497484|gb|ACK45677.1| integrase family protein [Shewanella baltica OS223] gi|315266542|gb|ADT93395.1| integrase family protein [Shewanella baltica OS678] Length = 287 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 59/225 (26%), Positives = 109/225 (48%), Gaps = 27/225 (12%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 +LK L+GI F +++ R T + ++ K+ + LP+ L+ + + +L H Sbjct: 65 TLKLQLNGIHFFYEHVLGRDFTVQLSLP-----KRPHKLPQLLSCQD----IAALLCHCQ 115 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS 205 + + A+L L YGCGLR+SE + +I + L++ QGKG R+V + P+ Sbjct: 116 ------NLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGAYDRLVIISPT 169 Query: 206 VRKAILEYY-DLCPFDLNLNIQLPLFRGIRGK---PLNPGVFQRYIRQLRRYLGLPLSTT 261 + + +Y+ P + LF PL+ F++ + + R + + Sbjct: 170 LLTLLRQYWRAYHPVEW-------LFASTYHDVVYPLHESTFRKALAKAARLASITKPCS 222 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 H+LRH++ATH L G L +Q+ LGH + +T+ Y + + + G Sbjct: 223 PHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPELG 267 >gi|164633081|gb|ABY64756.1| IntI1 [Klebsiella pneumoniae] Length = 317 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 75/304 (24%), Positives = 124/304 (40%), Gaps = 58/304 (19%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 33 TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 83 LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207 + LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191 Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +A + F + + P +R Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT I Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311 Query: 298 YTNV 301 Y + Sbjct: 312 YRHC 315 >gi|134098863|ref|YP_001104524.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] gi|291005779|ref|ZP_06563752.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] gi|133911486|emb|CAM01599.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] Length = 329 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 74/159 (46%), Gaps = 8/159 (5%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSVRKAILE 212 R+ A+L L G+R +E L L ++ L ++GKG K R +P+ ++ I Sbjct: 149 RDLAVLATLLCTGVRSAELLDLKVGSLAGRAGDRRLHVRGKGGKNRSIPIEDALDSVIQN 208 Query: 213 YYDL--CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP----LSTTAHTLR 266 Y + F L PLF R +PL G Q +RQ R G+ H LR Sbjct: 209 YLETRRARFGERLPGSDPLFVDHREEPLRRGGLQYLVRQSLRAAGMSDRVQRGAMVHALR 268 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 H+FAT L +G I +LGH ++++Q Y +V ++ Sbjct: 269 HTFATRLAEDGASAAEIAKLLGHASINSSQTYIDVTARE 307 >gi|89147351|gb|ABD62536.1| integrase [uncultured bacterium] Length = 163 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 31/60 (51%), Positives = 41/60 (68%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 V QR ++Q R G+ + HT RHSFATHLL G D+R++Q +LGH +STT IYT+V Sbjct: 103 VLQRAVKQAVRDAGISKPASCHTFRHSFATHLLDAGYDIRTVQELLGHKHVSTTMIYTHV 162 >gi|89147663|gb|ABD62690.1| integrase [uncultured bacterium] Length = 163 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 32/64 (50%), Positives = 44/64 (68%) Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 ++ V Q +++ R G+ T HTLRHSFATHLL NG D+R++Q +LGH +STT I Sbjct: 99 VDENVLQVAVKRAVRASGVNKPATCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMI 158 Query: 298 YTNV 301 YT+V Sbjct: 159 YTHV 162 >gi|282901889|ref|ZP_06309792.1| Phage integrase [Cylindrospermopsis raciborskii CS-505] gi|281193227|gb|EFA68221.1| Phage integrase [Cylindrospermopsis raciborskii CS-505] Length = 287 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 78/149 (52%), Gaps = 13/149 (8%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSVRKAI 210 + RN IL LL+ CGLR+SE L +I D+ ST + I GKG+K R + ++P + A Sbjct: 136 NTRNRLILQLLFFCGLRVSELTILLWADIKDNGSTAYVHITGKGNKQRTL-IIPPLLWAS 194 Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 L+ + + P+F+ +G K L +R + +G+ S + H LRH+ Sbjct: 195 LKSHKTTN-------ESPVFKSRKGGKNLTQKAVWDIVRTASQRIGI--SASPHWLRHTH 245 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 A+ L NG D+ + + LGH ++TT Y Sbjct: 246 ASLALHNGADINQVSTSLGHSSVATTTKY 274 >gi|109947411|ref|YP_664639.1| integrase-recombinase protein [Helicobacter acinonychis str. Sheeba] gi|109714632|emb|CAJ99640.1| integrase-recombinase protein [Helicobacter acinonychis str. Sheeba] Length = 361 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 93/189 (49%), Gaps = 14/189 (7%) Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 N LP LN ++ ++++ T + + RN ++ ++ G+R +EAL L ++ Sbjct: 168 NKLPTYLNSEELEKFLESI--DTIEMSAKVRVRNRLLIKIIVFTGMRSNEALQLKIKDFT 225 Query: 183 DDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 + T+ I+GKGDK R V L + ++ K L +L P +L LF +G Sbjct: 226 LENGCYTILIKGKGDKYRAVVLKAFHIENLLKEWLIERELYPVKNDL-----LFCNQKGM 280 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 L + + ++ + GL AH LRHSFAT L DL +Q LGH L+T+ Sbjct: 281 ALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHASLNTS 340 Query: 296 QIYTNVNSK 304 +IYT+ + + Sbjct: 341 RIYTHFDKQ 349 >gi|315930520|gb|EFV09564.1| phage integrase family protein [Campylobacter jejuni subsp. jejuni 305] Length = 187 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/144 (33%), Positives = 78/144 (54%), Gaps = 13/144 (9%) Query: 166 CGLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223 G+R+SEA+++ +I + D +RI+ KG+K R+V ++K ++ YDL ++++ Sbjct: 35 TGIRVSEAINIKMGDISEENDLYIIRIRAKGNKYRVVM----IKKELI--YDLLK-NVSI 87 Query: 224 NI---QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGD 279 N LF +G PL R + QL G+ AH LRH+FAT L D Sbjct: 88 NYISKDALLFVNKKGTPLTQSYVSRIVEQLLFRAGIRKQKNGAHMLRHTFATLLYKKQKD 147 Query: 280 LRSIQSILGHFRLSTTQIYTNVNS 303 L +Q LGH L+T++IYT+ ++ Sbjct: 148 LVLVQEALGHASLNTSRIYTHFDN 171 >gi|268679893|ref|YP_003304324.1| integrase family protein [Sulfurospirillum deleyianum DSM 6946] gi|268617924|gb|ACZ12289.1| integrase family protein [Sulfurospirillum deleyianum DSM 6946] Length = 353 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 61/260 (23%), Positives = 126/260 (48%), Gaps = 21/260 (8%) Query: 58 ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR----KITTESNI 113 + + +++++ + F++ + T + D + K + SF K+L K+ K TT Sbjct: 90 LQLHSLKEIDEELLSEFLASQ-TGSLSDATKKNYRIALLSFFKFLDKQNEDEKGTTYQFR 148 Query: 114 LNMRNL-----KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168 + ++N ++ LP + +++ + + + + A+N ++ ++ G+ Sbjct: 149 IELKNWGGLGGRRGEKLPAHMYKEEITRFLKAI--EETEFKPYAQAKNRLLIKMILYTGM 206 Query: 169 RISEALSLTPQNIMDDQSTL--RIQGKGDKIRIVPL-LPSVRKAILEYYDLCPFDLNLNI 225 R+SEAL L ++++ +++ L I+GKG+K R + ++ + E+ + D L Sbjct: 207 RVSEALGLKIKDMVKEENYLICHIRGKGNKPRTAMIKYETIEADLQEWMEYRSSDSAL-- 264 Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQ 284 LF+ GKPL + ++ + G+ AH LRH+FAT L DL +Q Sbjct: 265 ---LFQSRTGKPLTQAYVSYVMDKMLFHAGIRKEKNGAHMLRHTFATLLYQKNRDLILVQ 321 Query: 285 SILGHFRLSTTQIYTNVNSK 304 LGH L+T++IYT+ + + Sbjct: 322 EALGHADLNTSRIYTHFDKE 341 >gi|327438335|dbj|BAK14700.1| integrase [Solibacillus silvestris StLB046] Length = 280 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 71/299 (23%), Positives = 132/299 (44%), Gaps = 29/299 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + Q+ +IE G S LTL++Y Q+ + L F+ + + + +L I++ Sbjct: 8 KKYQQDKKIE-GYSTLTLKTY---CFQYNLLLRFFGDIDMNGFSTEKLKEYLIQS----- 58 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + SL + +KS ++ + ++ ++ K +P+ L+E + L Sbjct: 59 -GNHLKPSSLGHRIRCVKSLFRWSHEEGYILKNPAAKLKEPKLGKRIPKFLSELEIEHLR 117 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + T+ E +A+ +Y G RI E + L +I +++ +QGKGDK R Sbjct: 118 EAC--QTTME--------NALFEFMYSTGCRIGEVVKLDRHDIDFRTNSVIVQGKGDKER 167 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP---LNPGVFQRYIRQLRRYLG 255 V + Y D D P KP ++ + I+++ G Sbjct: 168 EVYFNTRCSIWLKRYLDEREDDD------PCLFITDRKPKRRMSIDNLRYIIKRVSNRAG 221 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 + H LRHS+ATH+++NG + IQS+LGH + TT+IY ++ K D+ + + Sbjct: 222 IKKCIHPHQLRHSYATHMINNGAPIDVIQSLLGHEKSETTKIYAQLSGKIRQDYYSKYF 280 >gi|320161519|ref|YP_004174743.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] gi|319995372|dbj|BAJ64143.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] Length = 300 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 75/148 (50%), Gaps = 8/148 (5%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213 R+ AI+ LL G+R SE + ++I + I GKG K R+VP+ + R A+ +Y Sbjct: 141 VRDRAIILLLLDTGIRASELCGIKVKDI--KPHGIYIHGKGSKDRLVPISETTRSALCDY 198 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 +I+ +F+ +G L+ + IR++ G+ H RH+FA + Sbjct: 199 -----IGEQKDIEKYVFKTEQGNVLSRDALRLIIRRIGDRAGVN-DAHPHRFRHTFAINF 252 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 L NGGD+ ++Q+ILGH L + Y + Sbjct: 253 LRNGGDVFTLQAILGHETLDMVRRYLAI 280 >gi|320335754|ref|YP_004172465.1| integrase family protein [Deinococcus maricopensis DSM 21211] gi|319757043|gb|ADV68800.1| integrase family protein [Deinococcus maricopensis DSM 21211] Length = 291 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 80/295 (27%), Positives = 128/295 (43%), Gaps = 41/295 (13%) Query: 20 NWLQNLEI------ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 NW Q+ + +GLS TL+ Y RQ Y+ E+ T+ + Y Sbjct: 2 NWNQHFNLFIGDREYQGLSPETLRYY----RQCWERFKQYSGEEPTVDRMTLQQY----- 52 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEK 132 IS + T S+ G+K FLK+ E + + LK PRA +K Sbjct: 53 LISLQATHT--PSSIATRWRGLKIFLKWC----YVEEYSEFDPSRLKN----PRAPFKKK 102 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQ 191 Q L+ ++ + L + + R+ AI+ LL+ G+R E +LT ++ + ++ Sbjct: 103 QPLSEIEVLKLLNACR----NFRDKAIVALLFDTGIRSKELCNLTVGDVDLVNRCVYVRN 158 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF----RGIRGKPLNPGVFQRYI 247 GKG + RIVP PS + DL + N++ P F +G G LN + Sbjct: 159 GKGGRDRIVPFSPSALR------DLRKWAQQRNVESPWFFHVVKGEVGGALNRRWLHGLL 212 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + GL H LRHS+A +++ G+ ++Q LGH + TQ Y N+N Sbjct: 213 MSAGKRAGLGEIVGPHKLRHSYARSYIASNGNPMALQETLGHSSIIVTQRYVNLN 267 >gi|99034662|ref|ZP_01314606.1| hypothetical protein Wendoof_01000576 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 191 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/180 (31%), Positives = 94/180 (52%), Gaps = 18/180 (10%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM------DDQSTLRIQGKGDKIRIVPLLPSVRK 208 R AIL +LY G+R+SE +S+ + + + + I+GK + R + + Sbjct: 15 RLCAILDILYSSGMRVSELISMKLCEVSHLINSNNKECYIIIKGKSGRERQILFNEQALQ 74 Query: 209 AILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRY---IRQLRRYLGLPLST-TAH 263 ++ Y + ++ + LF G KP P QR +++L R + + + H Sbjct: 75 SLRNYLSVRDNLISKEKESDWLFPG--DKPNKPITRQRVGQLMKELARKCNIDENKISPH 132 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323 +RHSFATHLL++G ++ IQ +LGH LSTTQIYT++ ++ D + + +HP ITQ Sbjct: 133 VVRHSFATHLLNSGANIVLIQKVLGHTNLSTTQIYTHIANEKLKDKLAD----SHP-ITQ 187 >gi|322376313|ref|ZP_08050806.1| integrase/recombinase XerD [Streptococcus sp. M334] gi|321282120|gb|EFX59127.1| integrase/recombinase XerD [Streptococcus sp. M334] Length = 212 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 2/179 (1%) Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 ++P + + + L V++ + K RN I+ LL G+RISE + ++I Sbjct: 14 TIPHDILKSIFIYLEQKVIVSKTDYQKQHAERNLLIISLLLSTGIRISELCHIRLKDINL 73 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 TL I GKG K RI+ L +LE Y + + + P + KPL+ Sbjct: 74 SNKTLHIIGKGKKERILFLGDQTTFNLLETYINKTRNESNDFLFPGKHSL--KPLSEQSV 131 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + ++++ L + T H RHSFAT LL + D+R IQ ILGH +S TQIYT+V+ Sbjct: 132 RLILKRIVEQNSLSRTITPHMFRHSFATMLLDSDVDIRYIQQILGHSSISVTQIYTHVS 190 >gi|260889471|ref|ZP_05900734.1| tyrosine recombinase XerC [Leptotrichia hofstadii F0254] gi|260860882|gb|EEX75382.1| tyrosine recombinase XerC [Leptotrichia hofstadii F0254] Length = 91 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 4/86 (4%) Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 +GK L +R I G+ T H RHSFAT LL+NG D+R +Q +LGH ++ Sbjct: 6 KGKKLTTRSLRRLISAHAHEAGIQKEITPHVFRHSFATELLNNGVDIRYLQELLGHSSIA 65 Query: 294 TTQIYTNVNSKNGGDWMMEIYDQTHP 319 TTQ+YT+V+ ++ +IY THP Sbjct: 66 TTQVYTHVSKA----FLRDIYMNTHP 87 >gi|169826684|ref|YP_001696842.1| hypothetical protein Bsph_1102 [Lysinibacillus sphaericus C3-41] gi|168991172|gb|ACA38712.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 238 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 106/221 (47%), Gaps = 19/221 (8%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 SL + +KS ++ + T ++ ++ K +P+ L+E + L + T+ Sbjct: 24 SLGHRIRCVKSLFRWSHEEGYTLKNPAAKLKEPKLGKRIPKFLSEVEIEHLREAC--QTT 81 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 E A+ +Y G RI E + L ++I +++ +QGKGDK R V + Sbjct: 82 ME--------KALFEFMYSTGCRIGEVVKLNREDIDFQSNSVIVQGKGDKEREVYF--NT 131 Query: 207 RKAI-LEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 R +I L+ Y D + + LF R + ++ + I+++ + S H Sbjct: 132 RCSIWLKRY----LDEREDREPCLFITDRRPKRRMSIDNLRYIIKRISNRASIKKSIHPH 187 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 LRHS+ATH+++NG + IQS+LGH + TT+IY ++ K Sbjct: 188 QLRHSYATHMINNGAPIDVIQSLLGHEKSETTKIYAQLSGK 228 >gi|89147504|gb|ABD62612.1| integrase [uncultured bacterium] Length = 164 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 73/156 (46%), Gaps = 38/156 (24%) Query: 184 DQSTLRIQ-GKGDKIRIVPL-------LPSVRKA--ILEYYDLCPFDLNLNIQLPL---- 229 D T+ ++ GKG K R+VPL L S+ KA I DL ++ P+ Sbjct: 8 DTGTMMVRDGKGQKDRVVPLPQSSIEGLKSILKARRITYEEDLAAGIGEASLPTPISNKY 67 Query: 230 ------------FRG------------IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 F G +R ++ QR I++ G+ T HTL Sbjct: 68 PNAGKEWIWQHVFAGSRLSLDPRSEGTVRRHHVHESGLQRSIKKAAISAGITKRVTTHTL 127 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 RHSFATHLL +G D+R++Q +LGH +STT IYT+V Sbjct: 128 RHSFATHLLESGADIRTVQELLGHKDVSTTMIYTHV 163 >gi|169334405|ref|ZP_02861598.1| hypothetical protein ANASTE_00805 [Anaerofustis stercorihominis DSM 17244] gi|169259122|gb|EDS73088.1| hypothetical protein ANASTE_00805 [Anaerofustis stercorihominis DSM 17244] Length = 353 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 75/299 (25%), Positives = 140/299 (46%), Gaps = 32/299 (10%) Query: 10 VSFELLKERQNWLQNLEIERGLSKLTLQSYEC-DTRQFLIFLAFYTEEKITIQTIR-QLS 67 + FE L E +L+ + +S L + + D F +L++YT+E + + QLS Sbjct: 52 IFFEYLIENHPLFTHLKDIKDISLSDLDNVKAVDLEDFTEYLSYYTKEHYKNENSKVQLS 111 Query: 68 YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY-LKKRKITTESNILN--MRNLKKS-- 122 + +R R LS ++SF KY KK I T +L +N +K Sbjct: 112 NS---------------NRGKMRKLSTLRSFYKYYFKKEMIKTNPTVLVDLPKNYEKPII 156 Query: 123 ----NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178 N + L+E ++ + L ++TK R+ AI+ LL G G+RISE + L Sbjct: 157 RLEPNEVANLLDEIESGKSLTPAQLKYHNKTK---VRDLAIVTLLVGTGIRISECVGLNV 213 Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238 ++ + + + KG I+ + VR+A+L Y +++ + LF ++ K + Sbjct: 214 NDVDFNNDSFVVTRKGGNKTILYMPEEVREALLRYLRETRENIDTE-ESALFLSLQNKRM 272 Query: 239 NPGVFQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 Q+ +++ + + +PL + + H LR ++ T+L GD+ + +LGH ++TT+ Sbjct: 273 TQSSIQKMLKKYTK-IVVPLKNISPHKLRSTYGTNLYKETGDIYLVADVLGHKDVNTTK 330 >gi|303258389|ref|ZP_07344392.1| integrase/recombinase [Burkholderiales bacterium 1_1_47] gi|302858835|gb|EFL81923.1| integrase/recombinase [Burkholderiales bacterium 1_1_47] Length = 320 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 76/159 (47%), Gaps = 8/159 (5%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 RN AI YL+ GCGLR +E L + + + +I GKG+K R + +V + ++ Sbjct: 152 RNRAIFYLMLGCGLRRAEVCELKVKQVSLKSRSAKIIGKGNKERNIYFPDAVLDVLKIWF 211 Query: 215 DLCPFDLNLNIQLPLFRGIRGK-------PLNPGVFQRYIRQL-RRYLGLPLSTTAHTLR 266 + + N + +F I K L+P R I++L L T H LR Sbjct: 212 EFRQLNKNESDAGFVFGRIDNKQRLHLDIALDPSSVTRIIKKLVSETENLEGRLTPHDLR 271 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 +FAT L+S D+ +Q ++GH ++TT Y + +N Sbjct: 272 RTFATRLISKNVDIVEVQKLMGHASVATTGNYVRKDEEN 310 >gi|134044556|ref|YP_001101862.1| phage integrase [Yersinia ruckeri] gi|133904919|gb|ABO40936.1| phage integrase [Yersinia ruckeri] Length = 336 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 67/274 (24%), Positives = 131/274 (47%), Gaps = 30/274 (10%) Query: 43 TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102 +RQ + + I Q +R +++ +R + +GD ++ + I ++L L Sbjct: 56 SRQTMSSFLNIVAKMIGFQNLRDCAWSSMRRHHILAVLEMLGDAG--KAPATINTYLSAL 113 Query: 103 KK--------RKITTES--NILNMRNLKKSNSLP--RALNEKQALTLVDNVLLHTSHETK 150 K ++I T+S +I +R+++ S LP RAL + + ++ ++ Sbjct: 114 KGVALEAWTMKQIDTDSFQHIKQVRSVRGSR-LPKGRALERHE----IRSLFFTCESDSS 168 Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210 R++AIL +L GCGLR SE ++L ++++ L++ GKG+K R+ + K + Sbjct: 169 AKGLRDAAILGVLLGCGLRRSEIVALDMESMIYKDRALKVLGKGNKERMAYVPGGAWKRL 228 Query: 211 LEYYDLCPFDLNLNIQLPLFRGIR------GKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 ++ + ++ + PLF IR G+ ++ + R GL H Sbjct: 229 DKWVE----EVRGTHEGPLFPRIRRFDDVTGERMSDQAIYHILETRRVEAGLE-KFAPHD 283 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 LR +FA+ +L NG D+ +++ +GH ++TTQ Y Sbjct: 284 LRRTFASSMLDNGEDIVTVKDAMGHSSIATTQKY 317 >gi|170690854|ref|ZP_02882020.1| integrase family protein [Burkholderia graminis C4D1M] gi|170144103|gb|EDT12265.1| integrase family protein [Burkholderia graminis C4D1M] Length = 408 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 75/292 (25%), Positives = 127/292 (43%), Gaps = 26/292 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 W+++ ERG + T+ ++ T QFL + T + + L +I A+ + Sbjct: 120 KWMRD---ERGFTPSTVAQWQSRTTQFLQWCV------DTDRRLEDLQPDDIDAYFIQN- 169 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTL 137 + G S+K + ++ +L+Y + + + L + SLP A T Sbjct: 170 ASRWGRISMKGVMGALRIYLRYSATQGLCDSRLAAALRTPRVYTQESLPYAPR----WTD 225 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDK 196 V +L T+ + K D RN AIL LL G+R E ++L + TL + + K + Sbjct: 226 VQQILATTATD-KPADIRNRAILMLLSIYGMRRGEVVALRLDQVNWAGRTLHVFRLKRRQ 284 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRG--KPLNPGVFQRYIRQLRRY 253 ++ PLLP+V +A+ Y D + P +F G+ +PL P + + Sbjct: 285 PQVYPLLPTVAEALASYID----TVRPPASAPQIFLGLHAPHRPLTPQAVFDLVNDRFKA 340 Query: 254 LGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 LG+ + H LRH+ A L+ G L+ I LGH S T Y V+ + Sbjct: 341 LGIEVKHRGPHALRHACAARLVDQGLSLKEIGDHLGHHSASATMTYAKVDMR 392 >gi|115379507|ref|ZP_01466601.1| tyrosine recombinase XerC [Stigmatella aurantiaca DW4/3-1] gi|115363485|gb|EAU62626.1| tyrosine recombinase XerC [Stigmatella aurantiaca DW4/3-1] Length = 182 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 86/179 (48%), Gaps = 11/179 (6%) Query: 24 NLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83 +LE E+G S T+++Y D F +L + + T + IR ++ Sbjct: 14 HLEHEKGASPHTVRNYLIDLVDFEKYLVGTMKLSLLAGT-----HAAIRGYLGTLSVDH- 67 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 S R L+ IKSF KYL ++K+ + S +++ K SLP+ L + +++ L Sbjct: 68 APASRGRRLASIKSFYKYLVRQKLLSASPAKLVKSPKLPKSLPKVLPVDEVFAILEMPSL 127 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202 T + R+ AIL +LYG GLRISE L ++ +R+ GKG K R+ P+ Sbjct: 128 KT-----VLGLRDRAILEILYGGGLRISELCGLNLLDVDRSGRIVRVMGKGGKERLCPV 181 >gi|222823741|ref|YP_002575315.1| integrase/recombinase [Campylobacter lari RM2100] gi|222538963|gb|ACM64064.1| integrase/recombinase [Campylobacter lari RM2100] Length = 355 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 79/300 (26%), Positives = 130/300 (43%), Gaps = 56/300 (18%) Query: 45 QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK 104 ++L+F Y+ ++I + + EI A IS + D S K + +F +L K Sbjct: 85 EYLLFYKLYSLKQIDEELL-----VEILASIS----ASLSDASKKNYRIAVINFFAFLDK 135 Query: 105 RKITTESNILNMRNLK--------KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156 + + + NLK + LP ++E + +D + ID +N Sbjct: 136 QNEEEQKAHIFDINLKNWAGISGSRGVKLPEYMSEDEVGKFLDAI--------DTIDFKN 187 Query: 157 SAILYLLYG-----CGLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIV--------P 201 + I L G+R+SEA+++ ++I + D +RI+ KG+K R+V Sbjct: 188 NTIRNRLIIKIIIFTGIRVSEAINIKLKDISEENDLYIIRIRAKGNKYRVVMIKKELIEH 247 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLST 260 LL VR L Y L LF GK L R + Q+ G+ Sbjct: 248 LLKDVRVNYLSYDGL------------LFVNRNGKALTQAYISRIVEQILFKAGIRKQKN 295 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS---KNGGDWMMEIYDQT 317 AH LRH+FAT L DL +Q LGH L+T++IYT+ ++ K + +++D+T Sbjct: 296 GAHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNEKLKLAAEVAKKLHDKT 355 >gi|297379871|gb|ADI34758.1| Tyrosine recombinase xerD [Helicobacter pylori v225d] Length = 356 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 57/194 (29%), Positives = 92/194 (47%), Gaps = 14/194 (7%) Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 N N LP LN ++ ++ + + + RN ++ ++ G+R +EAL L Sbjct: 158 NQSAGNKLPTHLNNEELEKFLEGI--DKIEMSAKVRTRNRLLIKIIVFTGMRSNEALQLK 215 Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231 ++ + T+ I+GKGDK R V L + S+ K L +L P +L LF Sbjct: 216 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLIERELYPVKNDL-----LFC 270 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290 +G L + + ++ + GL AH LRHSFAT L DL +Q LGH Sbjct: 271 NQKGSALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 330 Query: 291 RLSTTQIYTNVNSK 304 L+T++IYT+ + + Sbjct: 331 SLNTSRIYTHFDKQ 344 >gi|253577466|ref|ZP_04854781.1| integrase/recombinase [Paenibacillus sp. oral taxon 786 str. D14] gi|251843166|gb|EES71199.1| integrase/recombinase [Paenibacillus sp. oral taxon 786 str. D14] Length = 339 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 54/215 (25%), Positives = 91/215 (42%), Gaps = 17/215 (7%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 + IK F +L + ++ +++ K + E+Q + L + + Sbjct: 113 IKAIKRFFTFLHEEGWIPDNPAAHLKTRKGHQPTIPSFTEEQVV-----ALFKQPDQNTF 167 Query: 152 IDARNSAILYLLYGCGLRISEALSL-TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210 R+ +L L+ GLR+ E + L T Q + D L + GK K R +P VRK + Sbjct: 168 TGFRDFVMLSLILDTGLRVGEMIKLKTSQVDIKDSQLLGVIGKSKKPRDIPFCDDVRKLL 227 Query: 211 LEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLR 266 + Y + +P F + G+ L FQ + Q + G+ + + HTLR Sbjct: 228 IRY-------IKARGDVPSQYFFVTLHGRQLGVRTFQDTLHQYGKDAGITNVRVSPHTLR 280 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 H+FA + GD S+Q ILGH + Y N+ Sbjct: 281 HTFAKMYILQDGDPYSLQDILGHTSQDMVKKYVNL 315 >gi|332884384|gb|EGK04648.1| hypothetical protein HMPREF9456_03401 [Dysgonomonas mossii DSM 22836] Length = 324 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 17/156 (10%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDL 216 +L ++Y CG R++E L + Q++ D +R+ KG K R V + PS+R+ +LE Y Sbjct: 140 VLLRIMYCCGTRVTETLRIRKQDVDIDNGIIRLMVTKGSKERYVVMSPSLRQ-LLEEYAG 198 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA------HTLRHSFA 270 F N P+F G+PL Q + R++ R GLP +++ H RH+FA Sbjct: 199 KTFSTLENTD-PIFSNRHGQPLTEPTLQSFHRKILRLAGLPAASSTGNTKRLHDWRHTFA 257 Query: 271 TH----LLSNGGDLR----SIQSILGHFRLSTTQIY 298 + ++ NG DL + + LGH + T+ Y Sbjct: 258 VYAFKQMVENGEDLYVSLPVLSAYLGHKSIMATEYY 293 >gi|171057457|ref|YP_001789806.1| integrase family protein [Leptothrix cholodnii SP-6] gi|170774902|gb|ACB33041.1| integrase family protein [Leptothrix cholodnii SP-6] Length = 337 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 74/299 (24%), Positives = 130/299 (43%), Gaps = 26/299 (8%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI-- 75 +Q + + L +R +S T+ Y FL F + + T + + I AF+ Sbjct: 17 QQFFTEYLVAQRAVSPRTVACYRDALSLFLGFASHKLGKAPTAMQLADIRPELILAFLDH 76 Query: 76 -SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 + R + R+L+ L+ +++FLK+ +R +T + +++++ ++P E+ Sbjct: 77 LEQGRKNTVRSRNLR--LTALRAFLKFAARRDVTA------LHDIERALAVPMKRFERPM 128 Query: 135 LTLVDN----VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLR 189 L + +L E W R+ +L +LY G R+SE + + + I+D + + Sbjct: 129 LGFLTRPEMLAVLGQPGE-NWSSQRDHLLLAMLYNTGARVSEMIGVRVVDVILDGGACVH 187 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-NPGVFQRYIR 248 + GKG K+R +PL S I + L P L + L G+ + V QR Sbjct: 188 LHGKGRKLRSIPLWKSTVVEIRAWLRLNPV---LRGEAALLPNRDGQAMCRSNVTQRLSL 244 Query: 249 QLRRYLGLPLS-----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + R S + HTLRH+ A HLL +G I LGH +TT Y + Sbjct: 245 AVTRATAEQPSLATKRVSPHTLRHTSAMHLLQSGVPFNVIALWLGHESTTTTHRYVEAD 303 >gi|89147470|gb|ABD62595.1| integrase [uncultured bacterium] Length = 163 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 35/74 (47%), Positives = 45/74 (60%) Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 P +R + P V + + + R + T HTLRHSFATHLL NG D+R+IQ +L Sbjct: 89 PRSDAVRRHHILPPVVHQALARAVRETAITKHITPHTLRHSFATHLLQNGTDIRTIQELL 148 Query: 288 GHFRLSTTQIYTNV 301 GH LSTT IYT+V Sbjct: 149 GHNDLSTTMIYTHV 162 >gi|332673521|gb|AEE70338.1| tyrosine recombinase XerC [Helicobacter pylori 83] Length = 356 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 57/194 (29%), Positives = 92/194 (47%), Gaps = 14/194 (7%) Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 N N LP LN ++ ++ + + + RN ++ ++ G+R +EAL L Sbjct: 158 NQSAGNKLPTHLNNEELEKFLEGI--DKIEMSAKVRTRNRLLIKIIVFTGMRSNEALQLK 215 Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231 ++ + T+ I+GKGDK R V L + S+ K L +L P +L LF Sbjct: 216 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLIERELYPVKNDL-----LFC 270 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290 +G L + + ++ + GL AH LRHSFAT L DL +Q LGH Sbjct: 271 NQKGSALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 330 Query: 291 RLSTTQIYTNVNSK 304 L+T++IYT+ + + Sbjct: 331 SLNTSRIYTHFDKQ 344 >gi|134044785|ref|YP_001102264.1| integrase/recombinase [Yersinia pestis biovar Orientalis str. IP275] gi|134047110|ref|YP_001102052.1| phage integrase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|165938094|ref|ZP_02226654.1| integrase [Yersinia pestis biovar Orientalis str. IP275] gi|229516079|ref|ZP_04405529.1| integrase [Vibrio cholerae RC9] gi|237640345|ref|YP_002891200.1| site-specific recombinase, phage integrase family protein [Escherichia coli] gi|237810080|ref|YP_002894520.1| site-specific recombinase, phage integrase family protein [Escherichia coli] gi|237810260|ref|YP_002894699.1| site-specific recombinase, phage integrase family protein [Salmonella enterica] gi|300836964|ref|YP_003754018.1| integrase/recombinase [Klebsiella pneumoniae] gi|300927180|ref|ZP_07142917.1| site-specific recombinase, phage integrase family [Escherichia coli MS 182-1] gi|133905029|gb|ABO41044.1| phage integrase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|133905319|gb|ABO42081.1| integrase/recombinase [Yersinia pestis biovar Orientalis str. IP275] gi|165914117|gb|EDR32734.1| integrase [Yersinia pestis biovar Orientalis str. IP275] gi|229346859|gb|EEO11827.1| integrase [Vibrio cholerae RC9] gi|229561564|gb|ACQ77767.1| site-specific recombinase, phage integrase family protein [Escherichia coli] gi|229561744|gb|ACQ77946.1| site-specific recombinase, phage integrase family protein [Salmonella enterica] gi|229561936|gb|ACQ78137.1| site-specific recombinase, phage integrase family protein [Escherichia coli] gi|299474768|gb|ADJ18592.1| integrase/recombinase [Klebsiella pneumoniae] gi|300416847|gb|EFK00158.1| site-specific recombinase, phage integrase family [Escherichia coli MS 182-1] gi|324008197|gb|EGB77416.1| site-specific recombinase, phage integrase family [Escherichia coli MS 57-2] gi|327536617|gb|AEA95450.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Dublin] Length = 336 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 67/274 (24%), Positives = 131/274 (47%), Gaps = 30/274 (10%) Query: 43 TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102 +RQ + + I Q +R +++ +R + +GD ++ + I ++L L Sbjct: 56 SRQTMSSFLNIVAKMIGFQNLRDCAWSSMRRHHILAVLEMLGDAG--KAPATINTYLSAL 113 Query: 103 KK--------RKITTES--NILNMRNLKKSNSLP--RALNEKQALTLVDNVLLHTSHETK 150 K ++I T+S +I +R+++ S LP RAL + + ++ ++ Sbjct: 114 KGVALEAWTMKQIDTDSFQHIKQVRSVRGSR-LPKGRALERHE----IRSLFFTCESDSS 168 Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210 R++AIL +L GCGLR SE ++L +++ L++ GKG+K R+ + K + Sbjct: 169 AKGLRDAAILGVLLGCGLRRSEIVALDMGSMIYKDRALKVLGKGNKERMAYVPGGAWKRL 228 Query: 211 LEYYDLCPFDLNLNIQLPLFRGIR------GKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 ++ + ++ + PLF IR G+ ++ + R GL + H Sbjct: 229 DKWVE----EVRGTHEGPLFPRIRRFDDVTGERMSDQAIYHILETRRVEAGLEM-FAPHD 283 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 LR +FA+ +L NG D+ +++ +GH ++TTQ Y Sbjct: 284 LRRTFASSMLDNGEDIVTVKDAMGHSSIATTQKY 317 >gi|89147400|gb|ABD62560.1| integrase [uncultured bacterium] Length = 163 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 30/64 (46%), Positives = 44/64 (68%) Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 ++ Q+ +++ G+P + HTLRHSFATHLL NG D+R++Q +LGH +STT I Sbjct: 99 VSESALQKAMKEAIHRAGVPKRGSCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMI 158 Query: 298 YTNV 301 YT+V Sbjct: 159 YTHV 162 >gi|83722829|gb|ABC41686.1| integrase [uncultured bacterium] Length = 163 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 46/64 (71%) Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 ++ G R +++ + G+ +AHTLRHSFATHL+ +G D+R++Q +LGH ++TTQI Sbjct: 99 VDDGALSRALKKACKLAGIMKPVSAHTLRHSFATHLIESGYDIRTVQELLGHKDVATTQI 158 Query: 298 YTNV 301 YT+V Sbjct: 159 YTHV 162 >gi|309796487|ref|ZP_07690895.1| site-specific recombinase, phage integrase family [Escherichia coli MS 145-7] gi|308119992|gb|EFO57254.1| site-specific recombinase, phage integrase family [Escherichia coli MS 145-7] Length = 338 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 67/274 (24%), Positives = 131/274 (47%), Gaps = 30/274 (10%) Query: 43 TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102 +RQ + + I Q +R +++ +R + +GD ++ + I ++L L Sbjct: 58 SRQTMSSFLNIVAKMIGFQNLRDCAWSSMRRHHILAVLEMLGDAG--KAPATINTYLSAL 115 Query: 103 KK--------RKITTES--NILNMRNLKKSNSLP--RALNEKQALTLVDNVLLHTSHETK 150 K ++I T+S +I +R+++ S LP RAL + + ++ ++ Sbjct: 116 KGVALEAWTMKQIDTDSFQHIKQVRSVRGSR-LPKGRALERHE----IRSLFFTCESDSS 170 Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210 R++AIL +L GCGLR SE ++L +++ L++ GKG+K R+ + K + Sbjct: 171 AKGLRDAAILGVLLGCGLRRSEIVALDMGSMIYKDRALKVLGKGNKERMAYVPGGAWKRL 230 Query: 211 LEYYDLCPFDLNLNIQLPLFRGIR------GKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 ++ + ++ + PLF IR G+ ++ + R GL + H Sbjct: 231 DKWVE----EVRGTHEGPLFPRIRRFDDVTGERMSDQAIYHILETRRVEAGLEM-FAPHD 285 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 LR +FA+ +L NG D+ +++ +GH ++TTQ Y Sbjct: 286 LRRTFASSMLDNGEDIVTVKDAMGHSSIATTQKY 319 >gi|317012487|gb|ADU83095.1| integrase-recombinase protein [Helicobacter pylori Lithuania75] Length = 363 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 14/194 (7%) Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 N N LP LN ++ ++++ + + ARN ++ ++ G+R +EAL L Sbjct: 165 NQSAGNKLPTHLNNEELEKFLESI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 222 Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231 ++ + T+ I+GKGDK R V L + S+ K L L P +L LF Sbjct: 223 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLIERVLYPVKNDL-----LFC 277 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290 +G L + + ++ + GL AH LRHSFAT L DL +Q LGH Sbjct: 278 NQKGSALTQAYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 337 Query: 291 RLSTTQIYTNVNSK 304 L+T++IYT+ + + Sbjct: 338 SLNTSRIYTHFDKE 351 >gi|30248467|ref|NP_840537.1| Phage integrase [Nitrosomonas europaea ATCC 19718] gi|30138353|emb|CAD84361.1| Phage integrase [Nitrosomonas europaea ATCC 19718] Length = 292 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 91/183 (49%), Gaps = 39/183 (21%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDL---C 217 LLYG G+R+ E + L +++ ++ + I+ GKG K R+ +LP L+ + L Sbjct: 102 LLYGTGMRLMECVRLRVKDVDFERGEILIRDGKGSKDRVT-MLPESLAGPLQAHLLHRRT 160 Query: 218 PFDLN-----LNIQLP--------------LFRGI---------------RGKPLNPGVF 243 FD + ++ LP +++ I R ++ + Sbjct: 161 LFDDDSRLGKASVYLPDALERKYPNAATDWVWQYIFSSGSFSIDPRSGTERRHHIDEKLL 220 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 QR +++ + G+ T HTLRHSFATHLL +G D+R+IQ +LGH + TT IYT+V + Sbjct: 221 QRAMKKAVQASGITKLATPHTLRHSFATHLLDSGYDIRTIQELLGHKDVHTTMIYTHVLN 280 Query: 304 KNG 306 K G Sbjct: 281 KGG 283 >gi|118602010|ref|YP_908710.1| integrase [Photobacterium damselae subsp. piscicida] gi|118614748|ref|YP_908531.1| integrase [Photobacterium damselae subsp. piscicida] gi|118596839|dbj|BAF38143.1| integrase [Photobacterium damselae subsp. piscicida] gi|118597019|dbj|BAF38322.1| integrase [Photobacterium damselae subsp. piscicida] Length = 307 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 67/274 (24%), Positives = 131/274 (47%), Gaps = 30/274 (10%) Query: 43 TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102 +RQ + + I Q +R +++ +R + +GD ++ + I ++L L Sbjct: 27 SRQTMSSFLNIVAKMIGFQNLRDCAWSSMRRHHILAVLEMLGDAG--KAPATINTYLSAL 84 Query: 103 KK--------RKITTES--NILNMRNLKKSNSLP--RALNEKQALTLVDNVLLHTSHETK 150 K ++I T+S +I +R+++ S LP RAL + + ++ ++ Sbjct: 85 KGVALEAWTMKQIDTDSFQHIKQVRSVRGSR-LPKGRALERHE----IRSLFFTCESDSS 139 Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210 R++AIL +L GCGLR SE ++L +++ L++ GKG+K R+ + K + Sbjct: 140 AKGLRDAAILGVLLGCGLRRSEIVALDMGSMIYKDRALKVLGKGNKERMAYVPGGAWKRL 199 Query: 211 LEYYDLCPFDLNLNIQLPLFRGIR------GKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 ++ + ++ + PLF IR G+ ++ + R GL + H Sbjct: 200 DKWVE----EVRGTHEGPLFPRIRRFDDVTGERMSDQAIYHILETRRVEAGLEM-FAPHD 254 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 LR +FA+ +L NG D+ +++ +GH ++TTQ Y Sbjct: 255 LRRTFASSMLDNGEDIVTVKDAMGHSSIATTQKY 288 >gi|295110203|emb|CBL24156.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162] Length = 322 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 76/314 (24%), Positives = 129/314 (41%), Gaps = 58/314 (18%) Query: 8 EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67 E+ + E LK +L +IE G S TLQ Y+ L + ++R+++ Sbjct: 41 EVPNTEFLK---MFLDAKKIE-GCSDRTLQYYKVTVEHLLSQIK---------TSVRKIT 87 Query: 68 YTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126 EIRA+++ ++ K + ++ I SF +L++ +S + + ++ + Sbjct: 88 TEEIRAYLADYQKNSKCSNVTIDNIRRNISSFFSWLEEEDYILKSPMRRIHKIRTKTVVK 147 Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 + ++ L DN + + R+ AI+ LLY G+R+ E ++L +I + Sbjct: 148 SVITDEGIEKLRDNCM----------EIRDLAIIDLLYSTGIRVGELVNLNIDDIDLEGR 197 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF--- 243 + GKGDK R V FD + L + R K NP +F Sbjct: 198 ECVVYGKGDKERRV-----------------YFDAKSKVHLMRYIAER-KDANPALFVTL 239 Query: 244 ------------QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291 + +RQL R L L H R + AT + G + +Q ILGH + Sbjct: 240 DAPHDRLKISGVEIRLRQLGRKLELE-RIHPHKFRRTMATRAIDKGMPIEQVQKILGHSQ 298 Query: 292 LSTTQIYTNVNSKN 305 + TT Y VN N Sbjct: 299 IDTTMQYAMVNQNN 312 >gi|264678575|ref|YP_003278482.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2] gi|262209088|gb|ACY33186.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2] Length = 333 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 83/183 (45%), Gaps = 37/183 (20%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207 LLYG G+RISE L L +++ D T+ + +GKG K R ++P L P +R Sbjct: 139 LLYGTGMRISEGLQLWVKDLDFDHGTIIVREGKGSKDRALMLPESLAPGLREQLARARAW 198 Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 +A + F + + P +R + FQ Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 R ++ G+ T HTLRHSFA LL +G D+R++Q +LGH +STT IYT++ Sbjct: 259 RAFKRAVDEAGVAKPATPHTLRHSFAAALLRSGYDIRTVQDLLGHSDISTTMIYTHMLKV 318 Query: 305 NGG 307 +G Sbjct: 319 SGA 321 >gi|312193458|ref|YP_003991124.1| integrase [Geobacillus sp. Y4.1MC1] gi|311217910|gb|ADP76513.1| integrase family protein [Geobacillus sp. Y4.1MC1] Length = 304 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 74/305 (24%), Positives = 141/305 (46%), Gaps = 39/305 (12%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 +L E + +LQ E+G S T+ SY D QFL L + +T IR+ I+ Sbjct: 1 MLHEYETYLQ----EKGFSPNTVISYLNDVNQFLKDLHLRPGDYVTSADIRKW----IQQ 52 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 ++ + + ++ R L+ ++SF + +R ++ + ++++LK ++ + ++ Sbjct: 53 MLNPVEGKPLAISTINRRLNSLRSFYAWAVERHYIEQNPMKDIQDLKTADE-----DHEK 107 Query: 134 ALTLVDNV---LLHTSH----ETKWIDA-----RNSAILYLLYGCGLRISEALSLTPQNI 181 + L + LLH +++ +D R+ A++YLL GLR+ E +L ++ Sbjct: 108 IMWLTEEEFEDLLHRMRKKPVQSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDL 167 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL--- 238 + +RI GKG K+R VP + ++ A LE D F + + P + P Sbjct: 168 DLEMKRIRIVGKGMKVRTVP-ISNILLAELE--DWLKFRAEMAKKKP---HVAASPYVFY 221 Query: 239 ---NPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRLS 293 +P R I+++ LP T H RH+F +L + D+ ++ + GH ++ Sbjct: 222 SQRSPKFSVRGIQRMIESYSLPNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIA 281 Query: 294 TTQIY 298 TT Y Sbjct: 282 TTSRY 286 >gi|38491991|gb|AAR22338.1| integrase/recombinase [Helicobacter pylori] Length = 355 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 73/276 (26%), Positives = 130/276 (47%), Gaps = 29/276 (10%) Query: 48 IFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKR 105 +FL F Y ++ + +++ R LS ++ F+ + Q S+ + + ++ F YL +KR Sbjct: 77 LFLFFNYFKDNLKLRSFRMLSEEQVINFLFEL-AQNRKPSSMAKYVMYLRQFFDYLDRKR 135 Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165 + + + + N+ K SLPR LN+K + + +L + + + RN IL ++ Sbjct: 136 RYSFDFTLKNLVFAKTKESLPRHLNDKDLKSFLKTLLDYKPATS--FEKRNKCILLIVIL 193 Query: 166 CGLRISEALSLTPQNIMDDQS--TLRIQGKGDK-----IRIVPLLPSVRKAILEYYDLCP 218 GLR E L++ ++I ++ ++ IQGKG K I+ L PS+ + + Y L Sbjct: 194 GGLRKCEVLNIELKHIQVEEQNYSILIQGKGRKERKAYIKKSLLEPSLNAWLSDEYRLKY 253 Query: 219 FDLNLNIQLPLFRGIRGKPLN--------PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 F+ LF+ + K N P +F+ + Q++ Y T H RHSFA Sbjct: 254 FN-----GAYLFKKDKQKAQNSLTLYNFIPLIFK--LAQIKHYK--QYGTGLHLFRHSFA 304 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 T + DL LGH L +T+IY + ++ Sbjct: 305 TLIYQEAQDLVLTSRALGHSSLLSTKIYIHTTQEHN 340 >gi|161867961|ref|YP_001598142.1| hypothetical protein pOU7519_99 [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|161087340|gb|ABX56810.1| IntI1 [Salmonella enterica subsp. enterica serovar Choleraesuis] Length = 337 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 76/310 (24%), Positives = 125/310 (40%), Gaps = 58/310 (18%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 33 TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 83 LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207 + LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191 Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +A + F + + P +R Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + FQR ++ G+ T T RHSFAT LL +G D+R++Q +LGH +STT I Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPPTFRHSFATALLRSGYDIRTVQDLLGHSDVSTTMI 311 Query: 298 YTNVNSKNGG 307 YT+V G Sbjct: 312 YTHVLKVGGA 321 >gi|258624140|ref|ZP_05719090.1| Integrase [Vibrio mimicus VM603] gi|258583571|gb|EEW08370.1| Integrase [Vibrio mimicus VM603] Length = 350 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 67/274 (24%), Positives = 130/274 (47%), Gaps = 30/274 (10%) Query: 43 TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102 +RQ + + I Q +R +++ +R + +GD ++ + I ++L L Sbjct: 70 SRQTMSSFLNIVAKMIGFQNLRDCAWSSMRRHHILAVLEMLGDAG--KAPATINTYLSAL 127 Query: 103 KK--------RKITTES--NILNMRNLKKSNSLP--RALNEKQALTLVDNVLLHTSHETK 150 K ++I T+S +I +R+++ S LP RAL + + ++ ++ Sbjct: 128 KGVALEAWTMKQIDTDSFQHIKQVRSVRGSR-LPKGRALERHE----IRSLFFTCESDSS 182 Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210 R++AIL +L GCGLR SE ++L +++ L++ GKG+K R+ + K + Sbjct: 183 AKGLRDAAILGVLLGCGLRRSEIVALDMGSMIHKDRALKVLGKGNKERMAYVPGGAWKRL 242 Query: 211 LEYYDLCPFDLNLNIQLPLFRGIR------GKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 ++ + ++ + PLF IR G+ ++ + R GL H Sbjct: 243 DKWVE----EVRGTHEGPLFPRIRRFDDVTGERMSDQAIYHILETRRVEAGLE-KFAPHD 297 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 LR +FA+ +L NG D+ +++ +GH ++TTQ Y Sbjct: 298 LRRTFASSMLDNGEDIVTVKDAMGHSSIATTQKY 331 >gi|308271068|emb|CBX27678.1| Integrase/recombinase [uncultured Desulfobacterium sp.] Length = 192 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 77/176 (43%), Gaps = 37/176 (21%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPL----LPSVRKAILEYYDL 216 +LYGCGLR+ E + L + D L + GK K R VPL LP +R+ + DL Sbjct: 1 MLYGCGLRLFECIGLRVHCMNFDAGILTVHDGKRQKDRTVPLPETMLPELRRHLETLKDL 60 Query: 217 CPFDLNLN-----------------------------IQLPLFR---GIRGKPLNPGVFQ 244 DL +QL + G R L+ + Q Sbjct: 61 HKRDLEKKYAGVFLVNALELKYKNAAKDFIWQWFFPAMQLTYEKKSGGYRRYHLHESLVQ 120 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + I++ + +AHT HSFA+HLL D+R+IQ +LGH + TT IYT+ Sbjct: 121 KAIKKAVDKSRITKRASAHTFHHSFASHLLQANYDIRTIQELLGHSDVRTTMIYTH 176 >gi|90020074|ref|YP_525901.1| XerC/CodV family integrase/recombinase [Saccharophagus degradans 2-40] gi|89949674|gb|ABD79689.1| Integron integrase [Saccharophagus degradans 2-40] Length = 373 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 71/241 (29%), Positives = 109/241 (45%), Gaps = 50/241 (20%) Query: 99 LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158 L YL KR + E L K LP + +A+ ++ SH + + Sbjct: 85 LSYLFKRYLKRELGDLAYTPSSKHKKLPTVFSHDEAMRVI-------SH----LQGVHQV 133 Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC 217 ++ L+YG GLR+ EA+ L Q++ L I + KG K R L S+ + + Y D+ Sbjct: 134 LVMLMYGSGLRVMEAVRLRVQDVDFANECLMIRESKGLKWRRTLLPKSLIEPLTIYRDIA 193 Query: 218 ----PFDLN-----------LNIQLP----------LFRG--IRGKPLNPGVFQRYI--- 247 DL LN++ P +F + P + GV +R+ Sbjct: 194 LARHKADLADGYGSVYLPNALNVKYPNASKEPAWQYMFPAHHLSTDPRS-GVLRRHHMGE 252 Query: 248 RQLRRYLGLPLSTT-------AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + ++R + + L HT RHSFAT+LL G D+R+IQ +LGH +STTQIYT+ Sbjct: 253 QSVQRVVKIALKEARIYKKAGCHTFRHSFATNLLRAGTDIRNIQEMLGHTDISTTQIYTH 312 Query: 301 V 301 V Sbjct: 313 V 313 >gi|238025595|ref|YP_002909827.1| Phage integrase family protein [Burkholderia glumae BGR1] gi|237880260|gb|ACR32591.1| Phage integrase family protein [Burkholderia glumae BGR1] Length = 779 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 81/178 (45%), Gaps = 34/178 (19%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNI--------MDDQSTLRIQGKGDKIRIVP----- 201 R++ +L L Y GLR +E + T ++ ++D LR+ GKG + R VP Sbjct: 467 RDAFVLLLAYATGLRRAELAAATTGDLSRKALDGALEDAYVLRVDGKGRRRREVPMPARL 526 Query: 202 --LLPSVRKAILEYYDL--CPFDLNLNIQLPLFRGIRGKPLNP--------GVFQRYIRQ 249 LL + +A E L P D L L + G L+P G+F R + Sbjct: 527 MDLLRAELRARAEPLSLETAPADTPLVAHL-----VTGAALHPNTIGALFKGIFARAAER 581 Query: 250 LR-RYLGLPLS---TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 L Y G + H LRH+FA H L G D+R +Q++LGH L+TT Y ++ Sbjct: 582 LAPSYPGAAADLQRASTHWLRHTFANHGLDAGADIRDMQALLGHASLATTTHYAKGDA 639 >gi|223369822|gb|ACM88780.1| integrase [uncultured bacterium] Length = 163 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 31/64 (48%), Positives = 44/64 (68%) Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 ++ V Q +++ R G+ + HTLRHSFATHLL NG D+R++Q +LGH +STT I Sbjct: 99 VDENVLQVAVKRAVRASGVTKPASCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMI 158 Query: 298 YTNV 301 YT+V Sbjct: 159 YTHV 162 >gi|157502100|ref|YP_001485199.1| integrase/recombinase [Bacillus thuringiensis] gi|87133405|gb|ABD24315.1| integrase/recombinase [Bacillus thuringiensis] Length = 314 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 68/291 (23%), Positives = 129/291 (44%), Gaps = 22/291 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL+ E+G + T++ YE ++F+ + ++I + E + F+ + Sbjct: 13 WLK----EQGKRENTIKQYETTLKEFIQWYEDTNGVVFQGESITPMDLQEWKQFLMEVAK 68 Query: 81 QKIGDR----SLKRSLSGIKSFLKYLKKRKITTESNILNM------RNLKKSNSLPRALN 130 G + ++ + +K + K+L + T++N+ M +N + L R Sbjct: 69 TNSGKQLSVSTVSTKIGRVKPYFKFLYETN-RTQTNLGAMVKQPKIQNKNDAKWLDRISK 127 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 + L D L+ + W + RN AI+ ++ GLR+SE L +I D ++R Sbjct: 128 NRLMRYLEDVELIK---KNPWKNYRNLAIVNIMLQAGLRVSEVSKLKLDDIEDGFISVR- 183 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 GKG K R +P+ V +I ++ + N LF + PL+ + + Sbjct: 184 DGKGGKARKIPMNSDVVNSINKWKEHRQIHQAFKENQTEYLFVSQKNGPLSVVGIENIFK 243 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 +R++ GL T H LRH+F L+ G + + ++GH ++TT+IY Sbjct: 244 TIRKHTGLE-ELTPHVLRHTFGHDLVQKGIPISYVAELMGHTDINTTKIYV 293 >gi|146301359|ref|YP_001195950.1| phage integrase family protein [Flavobacterium johnsoniae UW101] gi|146155777|gb|ABQ06631.1| phage integrase family protein [Flavobacterium johnsoniae UW101] Length = 305 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 79/156 (50%), Gaps = 10/156 (6%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYD- 215 A+L + YGCGLR SE +L +++ + + + QGKG+K R VP+ +V + + +Y Sbjct: 144 ALLSIAYGCGLRRSEIANLDLKDVSLIKGMIVVRQGKGNKRREVPMSDTVLEYLKKYIRN 203 Query: 216 -----LCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 L + N RG R G+ LN + + I Q ++ + T H LRHS Sbjct: 204 ERPERLSGRNQNEEAFFINSRGRRSTGENLNE-ILSKMIEQTGKFELVQKEITLHCLRHS 262 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 A HL N + I+S LGH +++TT IY N K Sbjct: 263 IAFHLAENNAGIDFIRSFLGHTQINTTYIYAVQNKK 298 >gi|103485566|ref|YP_615127.1| phage integrase [Sphingopyxis alaskensis RB2256] gi|98975643|gb|ABF51794.1| phage integrase [Sphingopyxis alaskensis RB2256] Length = 302 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 55/177 (31%), Positives = 84/177 (47%), Gaps = 18/177 (10%) Query: 141 VLLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGD 195 V+L + + +DA ++ A L + YG GLR++E +L NI + LR++ GKG Sbjct: 109 VVLTMAEVKRLLDATRCLKHQAALSVAYGAGLRVAEVSALKVSNIDSKRMLLRVERGKGG 168 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL- 254 + R L + + +++ Q L+R P RQL R + Sbjct: 169 RDRNAMLPEGLLLLLRDWWRAG------RQQGILYRDGWLFPGQGAAAHISTRQLHRVVV 222 Query: 255 ------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + HTLRHSFATHLL +G ++R IQ++LGH L+TT Y V +K Sbjct: 223 EAAEAADIDKRVGPHTLRHSFATHLLEDGVNIRVIQALLGHANLNTTAFYLQVATKT 279 >gi|257091624|ref|YP_003165267.1| hypothetical protein CAP2UW1_4695 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048633|gb|ACV37820.1| hypothetical protein CAP2UW1_4695 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 318 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 70/254 (27%), Positives = 118/254 (46%), Gaps = 24/254 (9%) Query: 60 IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLK-YLKKRKITTESNILNMRN 118 + TI +LS ++R FI++ ++GD + + + + L+ YL+ R + +S + Sbjct: 64 VVTIAKLSAADVRRFIAR----QLGDSPSHSAAAQVATALRSYLRYRTVCGDSVVRLSAA 119 Query: 119 LK-----KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173 + K SLPRAL + V +L + K R AI+ GLR E Sbjct: 120 ISSPVQWKLASLPRALKPDE----VQRLLAALPYGRK--PRRGYAIVRCALDMGLRAGEI 173 Query: 174 LSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF-- 230 +L+ I + T+ ++G K + I+PL + +A+ +Y + N LF Sbjct: 174 ANLSIDAIDWREGTVTLKGTKSRRQDILPLPMATGQALADYLQ---HERLANPSRALFLC 230 Query: 231 -RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289 R R P+ + IR+ R GLP S + H LRH+ A L+ NG L+ + +L H Sbjct: 231 RRESRDIPITTYAVENVIRRACRRAGLPDSGS-HLLRHTLACRLVGNGSSLKEVADVLRH 289 Query: 290 FRLSTTQIYTNVNS 303 L TT+IY +++ Sbjct: 290 RSLETTRIYAKLDT 303 >gi|228942745|ref|ZP_04105273.1| Integrase/recombinase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975855|ref|ZP_04136385.1| Integrase/recombinase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982303|ref|ZP_04142579.1| Integrase/recombinase [Bacillus thuringiensis Bt407] gi|228777408|gb|EEM25699.1| Integrase/recombinase [Bacillus thuringiensis Bt407] gi|228783881|gb|EEM31930.1| Integrase/recombinase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816956|gb|EEM63053.1| Integrase/recombinase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 308 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 68/291 (23%), Positives = 129/291 (44%), Gaps = 22/291 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL+ E+G + T++ YE ++F+ + ++I + E + F+ + Sbjct: 7 WLK----EQGKRENTIKQYETTLKEFIQWYEDTNGVVFQGESITPMDLQEWKQFLMEVAK 62 Query: 81 QKIGDR----SLKRSLSGIKSFLKYLKKRKITTESNILNM------RNLKKSNSLPRALN 130 G + ++ + +K + K+L + T++N+ M +N + L R Sbjct: 63 TNSGKQLSVSTVSTKIGRVKPYFKFLYETN-RTQTNLGAMVKQPKIQNKNDAKWLDRISK 121 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 + L D L+ + W + RN AI+ ++ GLR+SE L +I D ++R Sbjct: 122 NRLMRYLEDVELIK---KNPWKNYRNLAIVNIMLQAGLRVSEVSKLKLDDIEDGFISVR- 177 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 GKG K R +P+ V +I ++ + N LF + PL+ + + Sbjct: 178 DGKGGKARKIPMNSDVVNSINKWKEHRQIHQAFKENQTEYLFVSQKNGPLSVVGIENIFK 237 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 +R++ GL T H LRH+F L+ G + + ++GH ++TT+IY Sbjct: 238 TIRKHTGLE-ELTPHVLRHTFGHDLVQKGIPISYVAELMGHTDINTTKIYV 287 >gi|228990374|ref|ZP_04150339.1| Integrase/recombinase [Bacillus pseudomycoides DSM 12442] gi|228768900|gb|EEM17498.1| Integrase/recombinase [Bacillus pseudomycoides DSM 12442] Length = 306 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 67/273 (24%), Positives = 117/273 (42%), Gaps = 11/273 (4%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 LS T+QSY +F F + E I + IR+ + + K R + R+ K Sbjct: 18 NLSPRTIQSYMATLHEFQEFCS--ERELIDTRDIREATVKSYLMYCQKTRGNNVVTRNTK 75 Query: 90 RSLSGIKSFLKYLKKRKITTE-SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 L +K F YL+ I +E N + L K + ++ ++ + Sbjct: 76 --LHHLKIFFNYLQHEDIISEKENPIRKMKLAKEDIKIEVFQDEHIKQMLRYYRRLKTRN 133 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 + R+ I+ L G G R+ E +++ + T+ + GK K + VPL + K Sbjct: 134 KSFYAYRDHTIIIFLLGTGSRLGELINIRWSELDLVNQTVTLFGKARKQQTVPLTNKLVK 193 Query: 209 AILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTL 265 EY +L +LP +F GK ++P + ++L++ + + +AHT Sbjct: 194 EFCEYKVFMERELG---RLPEYVFTTREGKQMSPNSVKLIFKRLKQVMNFSDVRLSAHTF 250 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 RH+FA L G D+ ++Q +L H L T+ Y Sbjct: 251 RHTFAHRCLMAGMDVFTLQRMLRHSNLRMTERY 283 >gi|67077924|ref|YP_245544.1| integrase-recombinase protein [Bacillus cereus E33L] gi|66970230|gb|AAY60206.1| integrase-recombinase protein [Bacillus cereus E33L] Length = 285 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 58/210 (27%), Positives = 105/210 (50%), Gaps = 25/210 (11%) Query: 93 SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152 S I +++K++ K K+ L +R+++ N P++L++KQ L+ V K Sbjct: 81 SAIVAYMKFVGKEKLLNHIKRLEVRHIR--NISPKSLSKKQRNQLLREV-------EKSQ 131 Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRI--QGKGDKIRIVPLLPSVRKA 209 + RN AI+Y + G+R+ E ++L ++ M ++S I GKG R +PL P+ + Sbjct: 132 NLRNIAIVYTMLYTGVRVFELVALNRDDVEMKERSGFIIIRDGKGGISRKIPL-PAESRY 190 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 L+ Y DL + + L FR K +F++Y AH LRH++ Sbjct: 191 HLQNYLQKRTDLEVPLFLSNFRKRLSKRSAQRIFEQY------------GIGAHMLRHTY 238 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 L+++G DL ++ ++GH ++TT+ Y Sbjct: 239 GRELVASGIDLATVADLMGHNDVNTTKRYA 268 >gi|326943857|gb|AEA19747.1| integrase/recombinase [Bacillus thuringiensis serovar chinensis CT-43] Length = 314 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 68/291 (23%), Positives = 129/291 (44%), Gaps = 22/291 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL+ E+G + T++ YE ++F+ + ++I + E + F+ + Sbjct: 13 WLK----EQGKRENTIKQYETTLKEFIQWYEDTNGVVFQGESITPMDLQEWKQFLMEVAK 68 Query: 81 QKIGDR----SLKRSLSGIKSFLKYLKKRKITTESNILNM------RNLKKSNSLPRALN 130 G + ++ + +K + K+L + T++N+ M +N + L R Sbjct: 69 TNSGKQLSVSTVSTKIGRVKPYFKFLYETN-RTQTNLGAMVKQPKIQNKNDAKWLDRISK 127 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 + L D L+ + W + RN AI+ ++ GLR+SE L +I D ++R Sbjct: 128 NRLMRYLEDVELIK---KNPWKNYRNLAIVNIMLQAGLRVSEVSKLKLDDIEDGFISVR- 183 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 GKG K R +P+ V +I ++ + N LF + PL+ + + Sbjct: 184 DGKGGKARKIPMNSDVVNSINKWKEHRQIHQAFKENQTEYLFVSQKNGPLSVVGIENIFK 243 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 +R++ GL T H LRH+F L+ G + + ++GH ++TT+IY Sbjct: 244 TIRKHTGLE-ELTPHVLRHTFGHDLVQKGIPISYVAELMGHTDINTTKIYV 293 >gi|114566277|ref|YP_753431.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337212|gb|ABI68060.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 340 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 71/289 (24%), Positives = 132/289 (45%), Gaps = 24/289 (8%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEE-KITIQ--TIRQLSYTEIRAFIS---KRRTQKI 83 G + T+ SY F++FL + +E +I+ I L+Y I +++S + R+ + Sbjct: 23 GSTPQTIDSYR---HSFILFLTYMQDEYQISADRVDISDLTYENIVSYLSWLKEIRSNGV 79 Query: 84 GDRSLKRS-LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 R+ +++ L+ FL Y + IL + K L + L+ V Sbjct: 80 STRNQRQAALNSFIRFLMYEFPEHLHEYQRILGIPVKKTPQKEISYLKTEGVALLISQVD 139 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVP 201 L+ + R+ IL LLY G+R+SE + + +++ + + TL + GKG K R +P Sbjct: 140 LNRQN-----GLRDYVILSLLYTTGIRVSELIQIRVKDLSLQEPFTLLVHGKGQKSRYIP 194 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-------PGVFQRYIRQLRRYL 254 L+ S I +Y +D + LF+ K G + + R++ + Sbjct: 195 LMRSTIPFIQKYLVQKRYDRPERLDEWLFKNHMSKSFTRQGINYIVGKYTKMAREIAPDM 254 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 +P + H +RH+ A L+ +G DL I+ +LGH + TT++Y ++ Sbjct: 255 -IPADFSPHKMRHTTAMGLVESGVDLIYIRDLLGHESIKTTEVYARADA 302 >gi|87307065|ref|ZP_01089211.1| Integron integrase [Blastopirellula marina DSM 3645] gi|87290438|gb|EAQ82326.1| Integron integrase [Blastopirellula marina DSM 3645] Length = 354 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 47/69 (68%) Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 ++ +F R ++ + GL T+HT RHSFATHLL++G D+R++Q +LGH + TT I Sbjct: 270 IDESLFSRSLKAAVKQAGLTKRVTSHTFRHSFATHLLADGYDIRTVQELLGHKDVRTTMI 329 Query: 298 YTNVNSKNG 306 YT+V ++ G Sbjct: 330 YTHVLNRGG 338 >gi|302389546|ref|YP_003825367.1| integrase family protein [Thermosediminibacter oceani DSM 16646] gi|302200174|gb|ADL07744.1| integrase family protein [Thermosediminibacter oceani DSM 16646] Length = 310 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 54/223 (24%), Positives = 96/223 (43%), Gaps = 19/223 (8%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL---- 142 +L + +K F YL++ +I E N + +P + + D + Sbjct: 74 TLNHKIRNLKIFFNYLEEIEIYDEKN-------NPAKPIPYLKEDVKIEVFTDYQIRQML 126 Query: 143 -----LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 L T + W R+ I+ L G G+R+ E ++L ++I + I GK Sbjct: 127 TYYRRLKTRDKAFWA-YRDYTIIVTLLGTGIRLGELVNLQWRHIDFVNQVMTIFGKKRIQ 185 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL- 256 R +PL + K + E+ C + +F + +P+ + ++L+ + Sbjct: 186 RSIPLTEKLVKELAEFKVFCERYFG-KLNDYVFVNSKNEPMTADAVKCMFKRLKEIMNFR 244 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 + +AHT RH+FA L NGGD+ S+Q ILGH ++ T Y Sbjct: 245 DVRLSAHTFRHTFAHRFLMNGGDVFSLQKILGHSKIEMTMRYV 287 >gi|186474498|ref|YP_001863469.1| integrase family protein [Burkholderia phymatum STM815] gi|184198457|gb|ACC76419.1| integrase family protein [Burkholderia phymatum STM815] Length = 418 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 70/278 (25%), Positives = 121/278 (43%), Gaps = 15/278 (5%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 RGL+ T +++ +FL+ + I + R++ ++ F+ +R ++ + RS Sbjct: 136 RGLAASTRRNHRDRIGEFLV--NHFGNRSIDM---RRVKPRDVLNFVVER-SKGLSPRSA 189 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALTLVDNVLLHTS 146 ++++L+Y + TES I + + +PR L ++Q + LH Sbjct: 190 GALAGSLRTYLRYRQSVGDHTESLIAAIPKVAVWSMARIPRLLTKEQI-----SQFLHAF 244 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPS 205 R A+ LL GLR E +L +I + TLRIQ K ++ +PL Sbjct: 245 DTRTPSGQRGYAMARLLVDLGLRAGEVAALQLSDIDWREGTLRIQAAKCKRVDFLPLPVQ 304 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-HT 264 +A+ Y R +P+ V +RQ G P ++ H Sbjct: 305 TGRALANYVHDGRGRTPSRALFVRHRAPFDRPVTSAVVGCSVRQAYARCGWPATSMGPHL 364 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 LRHS A+ +LSNG L+ I +L H L+TT IY+ ++ Sbjct: 365 LRHSLASRMLSNGASLKDIADVLRHRSLNTTMIYSKID 402 >gi|89147685|gb|ABD62701.1| integrase [uncultured bacterium] Length = 163 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 68/146 (46%), Gaps = 36/146 (24%) Query: 192 GKGDKIRIVPLLPSVRKAILEY-------YDLCPFDLNLNIQLP---------------- 228 GKG+K RIV L SVR +++ + +D D + LP Sbjct: 17 GKGNKDRIVMLPTSVRASLVHHLGRVRQLHDQDRVDGVSGVWLPEALSIKYPRADIEWGW 76 Query: 229 --LF--RGIRGKP---------LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275 F +G+ P L+ + I+ + S + HTLRHSFATHLL Sbjct: 77 QWCFPAKGLSTDPRSGTVRRHHLHDNTLHKAIKTAASLARINKSVSCHTLRHSFATHLLE 136 Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNV 301 +G D+RS+Q +LGH L TTQIYT+V Sbjct: 137 SGADIRSVQELLGHESLETTQIYTHV 162 >gi|291529765|emb|CBK95351.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] Length = 367 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 63/224 (28%), Positives = 103/224 (45%), Gaps = 16/224 (7%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL-----LHTS 146 LS ++S Y + I ++ +L +R K ++P AL ++QA ++ D +L + Sbjct: 128 LSALRSLYNYFLENDIVDKAPVLKIRQKKVDKTIPIALTDRQAESIYDTILGGSEQISAR 187 Query: 147 HETKWI--DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 E I AR+ AI L G+R+SE +SL ++I D+ +I K +V Sbjct: 188 QEASRIITSARDLAIYTLALHTGIRVSELVSLDVRDINLDEHCFKIIRKRGNEDVVYFDN 247 Query: 205 SVRKAILEYYD-LCPFDLNLNI---QLPLFRGIRGKPLNPGVFQRYIR-QLRRY--LGLP 257 + +L++ D L I + LF +GK + R + +++Y + P Sbjct: 248 TTENVLLDWLDERRNMKETLGIADDEDALFVSTKGKKRGTRLSVRSVEIMVKKYAQIAAP 307 Query: 258 LSTT--AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 T AH+LR S AT + DL QS+LGH +STT Y Sbjct: 308 EVTNFHAHSLRSSCATKIYDKSLDLVYTQSVLGHANISTTMRYV 351 >gi|89147628|gb|ABD62673.1| integrase [uncultured bacterium] Length = 163 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 45/74 (60%) Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 P R +R + Q ++ R G+ + + HT RHSFATHLL NG D+R++Q +L Sbjct: 89 PRSREVRRHHVQEKNLQNAVKLALRRAGIAKAASCHTFRHSFATHLLENGSDIRTVQELL 148 Query: 288 GHFRLSTTQIYTNV 301 GH +STT IYT+V Sbjct: 149 GHKDVSTTMIYTHV 162 >gi|229120912|ref|ZP_04250154.1| Site-specific recombinase, phage integrase [Bacillus cereus 95/8201] gi|228662572|gb|EEL18170.1| Site-specific recombinase, phage integrase [Bacillus cereus 95/8201] Length = 384 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 57/227 (25%), Positives = 109/227 (48%), Gaps = 8/227 (3%) Query: 80 TQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 +Q IG D ++ + +K+F+ + +++I +++ +K N+ L+ + +L Sbjct: 131 SQTIGLADETISSRIKRLKTFINWCLRQEIISKNPFNKFEGFRKDNTQIDILSVDELKSL 190 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKG 194 + +++ K R+ +L+LL RI+EAL L+P +I + IQ K Sbjct: 191 LKVAKSYSNKSFKHF--RDYVLLHLLVDGMFRITEALLLSPSDIDHTNRAVIIQSNNAKS 248 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 K R VPL + +++ + ++ +F + G+ L+ R +R+ Sbjct: 249 RKTRTVPLSNKTYRLLMQLLEENE-AFEDDVDDLIFLSLSGRMLSKNNVLRDMRKYAIEA 307 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + H +RHS ATH LS+ GD+ S++ ILGH L T IY+++ Sbjct: 308 NIKKRFYLHLIRHSAATHYLSSSGDVESLRKILGHADLRTVLIYSHL 354 >gi|89147416|gb|ABD62568.1| integrase [uncultured bacterium] Length = 163 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 44/69 (63%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 +R L+ QR +++ +GL + H LRHSFATHLL G D+R++Q +LGH + Sbjct: 94 VRRHHLHENALQRAVKETAVKVGLTKQMSCHVLRHSFATHLLEGGYDIRTVQELLGHADV 153 Query: 293 STTQIYTNV 301 STT IYT+V Sbjct: 154 STTMIYTHV 162 >gi|217032607|ref|ZP_03438095.1| hypothetical protein HPB128_11g1 [Helicobacter pylori B128] gi|298736017|ref|YP_003728542.1| hypothetical protein HPB8_521 [Helicobacter pylori B8] gi|216945677|gb|EEC24304.1| hypothetical protein HPB128_11g1 [Helicobacter pylori B128] gi|298355206|emb|CBI66078.1| conserved hypothetical protein [Helicobacter pylori B8] Length = 355 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 73/276 (26%), Positives = 130/276 (47%), Gaps = 29/276 (10%) Query: 48 IFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKR 105 +FL F Y ++ + +++ R LS ++ F+ + Q S+ + + ++ F YL +KR Sbjct: 77 LFLFFNYFKDNLKLRSFRMLSEEQVINFLFEL-AQNRKTSSMAKYVMYLRQFFDYLDRKR 135 Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165 + + + + N+ K SLPR LN+K + + +L + + + RN IL ++ Sbjct: 136 RYSFDFTLKNLAFAKTKESLPRHLNDKDLKSFLKTLLGYKPATS--FEKRNKCILLIVIL 193 Query: 166 CGLRISEALSLTPQNIMDDQS--TLRIQGKGDK-----IRIVPLLPSVRKAILEYYDLCP 218 GLR E L++ ++I ++ ++ IQGKG K I+ L PS+ + + Y L Sbjct: 194 GGLRKCEVLNIELKHIQVEEQNYSILIQGKGRKERKAYIKKSLLEPSLNAWLSDEYRLKY 253 Query: 219 FDLNLNIQLPLFRGIRGKPLN--------PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 F+ LF+ + K N P +F+ + Q++ Y T H RHSFA Sbjct: 254 FN-----GAYLFKKDKQKAQNSLTLYNFIPLIFK--LAQIKHYK--QYGTGLHLFRHSFA 304 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 T + DL LGH L +T+IY + ++ Sbjct: 305 TLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHN 340 >gi|154483513|ref|ZP_02025961.1| hypothetical protein EUBVEN_01217 [Eubacterium ventriosum ATCC 27560] gi|149735423|gb|EDM51309.1| hypothetical protein EUBVEN_01217 [Eubacterium ventriosum ATCC 27560] Length = 351 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 62/255 (24%), Positives = 124/255 (48%), Gaps = 21/255 (8%) Query: 56 EKITIQTIRQ-LSYTEIRAFISKRRTQKI-GDRSLKRSLSGIKSFLKYLKKRKI--TTES 111 +KIT I + L Y +R ++++ + G+R + R L+ +++ +Y K++ T + Sbjct: 81 DKITATDIEEYLEY--LRYYVTEDGKEHTNGERGIMRKLACLRTLYRYFYKKESIKTNPA 138 Query: 112 NILNMRNLKKSNSLPRALNEKQALTLVDNVLLH---TSHETKWID---ARNSAILYLLYG 165 +I++M + + + L+ + L+D V L T + K+ D R+ AIL LL G Sbjct: 139 SIVDMPKIHEKEIV--RLDADEVSVLLDQVELGDKLTKSQQKFHDKTKTRDMAILTLLLG 196 Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD----LCPFDL 221 G+R+SE + + +I S ++I+ KG ++ V A+L+Y + + P D Sbjct: 197 TGMRVSECVGIDINDIDFKNSGIKIRRKGGNETVIYFGEEVENALLDYLEERKLIVPQDG 256 Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281 + N LF ++ + + + +++ + T H LR ++ T L GD+ Sbjct: 257 HEN---ALFLSLQKRRIGVRAVENLVKKYSSLVTNLKKITPHKLRSTYGTALYKETGDIY 313 Query: 282 SIQSILGHFRLSTTQ 296 + +LGH ++TT+ Sbjct: 314 LVADVLGHKDVNTTK 328 >gi|89147377|gb|ABD62549.1| integrase [uncultured bacterium] Length = 163 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 43/69 (62%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 +R +P Q+ R G+ + H+LRHSFATHLL NG D+R++Q +LGH + Sbjct: 94 VRRHHTHPNSLQKAFHDAVRQAGVTKPASCHSLRHSFATHLLENGYDIRTVQELLGHSDV 153 Query: 293 STTQIYTNV 301 STT IYT+V Sbjct: 154 STTMIYTHV 162 >gi|331000358|ref|ZP_08324039.1| site-specific recombinase, phage integrase family [Parasutterella excrementihominis YIT 11859] gi|329572154|gb|EGG53819.1| site-specific recombinase, phage integrase family [Parasutterella excrementihominis YIT 11859] Length = 320 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 77/173 (44%), Gaps = 36/173 (20%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 RN AI YL+ GCGLR +E L + + + +I GKG+K R + P V +L+ + Sbjct: 152 RNRAIFYLMLGCGLRRAEVCELRVKQVSFKNRSAKIIGKGNKERTI-YFPDVVLDVLKTW 210 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPG-VFQRYIRQLRRYLGLPLST------------- 260 F+ FR + ++ G VF R +LR YL L Sbjct: 211 ----FE---------FRQLNKNEIDAGFVFGRIDNKLRLYLDTALDPSSVSRIIEKLVTE 257 Query: 261 --------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 T H LR +FAT L+S D+ +Q ++GH ++TT Y + +N Sbjct: 258 TENLDSRLTPHDLRRTFATRLISKNVDIVEVQKLMGHASVATTGNYVRKDEEN 310 >gi|120402127|ref|YP_951956.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] gi|119954945|gb|ABM11950.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] Length = 364 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 86/184 (46%), Gaps = 12/184 (6%) Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178 +++ LPR L +++ L+ + W R+ +I L+ GLR +E LS+ Sbjct: 172 VREQRRLPRGLTRQESAALLGSF-------RSW---RDRSIGGLMLMSGLRSTEVLSVRV 221 Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKP 237 ++ + +R+ GKG K R VP+ V AI Y + + + + +G+ RG+P Sbjct: 222 ADVDIARRWVRVLGKGSKERSVPIDTDVAGAIQTYLLVERPETDAEALFVVAKGVHRGQP 281 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L + R R G+ + H LRHSF T L G DL IQ+++GH + Sbjct: 282 LTAAGLRTVFRYHRERSGVS-AGHPHALRHSFGTALAEAGVDLSVIQALMGHDHADSAAA 340 Query: 298 YTNV 301 Y ++ Sbjct: 341 YIHL 344 >gi|118470883|ref|YP_888435.1| transposase A [Mycobacterium smegmatis str. MC2 155] gi|118172170|gb|ABK73066.1| transposase A [Mycobacterium smegmatis str. MC2 155] Length = 346 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 63/227 (27%), Positives = 100/227 (44%), Gaps = 27/227 (11%) Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150 S G K FL ++ K + + +LK LPR L + TL+D Sbjct: 118 SRGGWKPFLHHISKHMPSPRRTV----SLKAPKKLPRVLTPGEVQTLLDAC--------- 164 Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTL-------RIQGKGDKIRIVP 201 R+ +L LLY G+RI EAL L +I + Q T+ R + K RIVP Sbjct: 165 -DRLRDRFLLALLYDAGMRIGEALGLRHSDIAAAERQVTVCRRDNDNRARAKSLTARIVP 223 Query: 202 LLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 + + + +Y DL+ + + + L+ G PL G +R+LRR + Sbjct: 224 VSAELIRLYADYLHAEYGDLDSDYVFVNLWGRPHGHPLTYGAVYDLVRRLRRRTAIDFDP 283 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNG 306 H LRH+ AT +L +G L + +LGH ++ T Y ++N ++ Sbjct: 284 --HWLRHTAATRMLRDGIGLEVVAKLLGHANVTVTAATYGHLNVEDA 328 >gi|291546173|emb|CBL19281.1| Site-specific recombinase XerD [Ruminococcus sp. SR1/5] Length = 353 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 68/295 (23%), Positives = 131/295 (44%), Gaps = 48/295 (16%) Query: 38 SYECDTRQFLIFL----AFYTEEKI---TIQTIRQLSYTEIRAF---------ISKRRTQ 81 SY D R F FL + ++ + TI + Q+ ++ + +T+ Sbjct: 48 SYAYDIRIFFQFLLDQNPMFKDKNMSDFTIDVLDQIKAVDLEEYEEFLKVYKSADSSKTE 107 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRK-ITTESNIL-NMRNLKKSNSLPRALNEKQALTLVD 139 G+R +KR +S ++SF Y K + ITT ++L ++ + N + L+ + L+D Sbjct: 108 TNGERGVKRKISALRSFYAYYYKHEMITTNPSVLIDVPKIHDKNII--RLDTDEVAMLLD 165 Query: 140 NV------------LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 + + H +TK R+ AI+ LL G G+R+SE + L +++ + Sbjct: 166 YIENCGDTLTGQKRMYH--EKTK---DRDLAIVTLLLGTGIRVSECVGLDVEDVDFKNNG 220 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI------QLPLFRGIRGKPLNPG 241 +++ KG +V P V KA+ +Y ++ NI + LF + + + Sbjct: 221 IKVTRKGGNEMVVYFGPEVEKALKKY-----LEVRENITPLAGHEHALFYSTQRRRIGVQ 275 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + +++ R + T H LR ++ T L GD+ + +LGH ++TT+ Sbjct: 276 AIENLVKKYAREITTTKKITPHKLRSTYGTALYQETGDIYLVADVLGHKDVNTTK 330 >gi|300088762|ref|YP_003759284.1| integrase family protein [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528495|gb|ADJ26963.1| integrase family protein [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 304 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 54/215 (25%), Positives = 97/215 (45%), Gaps = 5/215 (2%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 SL R + +++F + + + ++ ++R + LP L + L+ + Sbjct: 83 SLHRMKAAVRAFFAWASEAGVVDDNPARSIRMHRLPRKLPVFLTAAEKKRLLKEL----K 138 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 T + R+ A++ +L G G+R+ E +L +I D LR++ KG+ ++ + + Sbjct: 139 GRTDFFALRDRAMIEVLLGTGIRLGELAALDMDDIDLDAKHLRVRAKGNVPQVNFIKTDL 198 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 R + Y ++ G+ + R LR+ G+ T H LR Sbjct: 199 RTLLRRYLAERRRHGRPEMEALFLSNRDGRLCQRQIANRLAHWLRKA-GIEKELTPHGLR 257 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 H+FATHL DL +Q LGH +STTQIYT++ Sbjct: 258 HTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHL 292 >gi|38637701|ref|NP_942675.1| putative integrase/recombinase [Ralstonia eutropha H16] gi|32527039|gb|AAP85789.1| putative integrase/recombinase [Ralstonia eutropha H16] Length = 333 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 79/292 (27%), Positives = 127/292 (43%), Gaps = 24/292 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +++ L R LSK T+ +Y R+FL + + ++ + +R F + Sbjct: 44 YVEYLREVRALSKATIINYTPFIREFL--EDCFGDRRVRLSRLRAGDVVNFVQF----QA 97 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITT---ESNILNMRNLKKSNSLPRALNEKQALTL 137 Q + + K + ++SFL+Y R T + + + N S+PR + +Q L Sbjct: 98 QHLHLKRAKLMTAALRSFLRYACYRGDMTLDLAAAVPVVANWSM-QSIPRGIPPEQIQEL 156 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 + ++ T+ + R+ AI+ LL GLR E L +I + L ++GK Sbjct: 157 LVSIDRRTA-----VGRRDYAIILLLARLGLRSGEVAFLDLDDIDWNTGVLSVRGKSGLR 211 Query: 198 RIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 +PL V KAI Y + L + P F G R G R+ Q R Sbjct: 212 NGLPLPADVGKAIAAYLRYGRPQSTSRRVFLRAKAP-FTGFRSA-CGVGSIVRHSLQ-RA 268 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + P +T AH RH+ A+ +L +G LR I +LGH TT IYT V+ K Sbjct: 269 GINAP-TTGAHQFRHALASQMLRHGASLREIGELLGHHHPQTTSIYTKVDIK 319 >gi|89147404|gb|ABD62562.1| integrase [uncultured bacterium] Length = 163 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 31/64 (48%), Positives = 44/64 (68%) Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L+ V Q+ ++ R GL + HTLRHSFA+HLL +G D+R++Q +LGH +STT I Sbjct: 99 LSETVLQKAVKHAIRQAGLDKRGSCHTLRHSFASHLLEDGYDIRTVQELLGHKDVSTTMI 158 Query: 298 YTNV 301 YT+V Sbjct: 159 YTHV 162 >gi|89147355|gb|ABD62538.1| integrase [uncultured bacterium] Length = 163 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 33/64 (51%), Positives = 42/64 (65%) Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 LN QR ++ G+ T HT RHSFATHLL NG D+R++Q +LGH +STTQI Sbjct: 99 LNELSVQRAVKVAIGIAGINKPATPHTFRHSFATHLLENGYDIRTVQDLLGHKDVSTTQI 158 Query: 298 YTNV 301 YT+V Sbjct: 159 YTHV 162 >gi|255690724|ref|ZP_05414399.1| glutamine amidotransferase, class I [Bacteroides finegoldii DSM 17565] gi|260623761|gb|EEX46632.1| glutamine amidotransferase, class I [Bacteroides finegoldii DSM 17565] Length = 343 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 70/304 (23%), Positives = 134/304 (44%), Gaps = 33/304 (10%) Query: 21 WLQNLEIE-----RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 WL+ IE R LS+ T SY R + +++ I I ++ I F+ Sbjct: 15 WLRPFLIEYLIVTRNLSRNTQMSYRDTFRMLVSYVSTLISIAIDNLKISDITTDVITKFL 74 Query: 76 SKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRK---ITTESNILNMRNLKKSNSLPRALNE 131 + K+ S L+ IK+F K+L + I ++ + + K + +++ Sbjct: 75 DYLEIERKVSVSSRNNRLAAIKAFAKFLAWKSPEHIDWCHHVTLIPSKKTEKRMITYMDK 134 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM----DDQST 187 + L D L ++ I +R+ I+ +Y G R+SE + + +++ Sbjct: 135 SEIEALADAPLKTCKYQG--IRSRDHVIILFMYNTGARVSEVIGVKVKDVAMPSKRGMPM 192 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQ 244 + + GKG K RI PL +++DL ++ +LP LF +P++ Sbjct: 193 VTLHGKGRKERICPLWE-------DFWDL--LKQFIDNKLPDDYLFLNRYNQPMSRFCIY 243 Query: 245 RYIRQLRRYLGLPLSTTA------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 I++ + + L + A H +RH+ ATHLL++G D+ +++ +GH + TT IY Sbjct: 244 EMIKKYSQDVILNHPSLANKRPSPHVIRHTTATHLLNSGADIDMVRNWMGHSSIDTTNIY 303 Query: 299 TNVN 302 ++ Sbjct: 304 AEIS 307 >gi|196048148|ref|ZP_03115325.1| integrase/recombinase, phage integrase family [Bacillus cereus 03BB108] gi|196020885|gb|EDX59615.1| integrase/recombinase, phage integrase family [Bacillus cereus 03BB108] Length = 368 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 75/332 (22%), Positives = 138/332 (41%), Gaps = 49/332 (14%) Query: 16 KERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFL-----AFYTEEKIT------IQT 62 KE+ W ++ +E + LS TL Y + FL +L A E +T I+T Sbjct: 17 KEKMPWYIIEYIEEKTNLSPATLYGYLIEYEMFLQWLISSRLATSDGEGVTRIHEVPIET 76 Query: 63 IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122 + L +++ F S Q +++ R+ S +KS YL RN+ Sbjct: 77 LEHLPLKQVKRFKSYLERQGNKTKAVIRTFSALKSLFNYLTSNTEDDNGECYFYRNVMAK 136 Query: 123 NSLPRA-LNEKQALTLVDNVLLHTSHETKWID-------------------------ARN 156 + + ++ + V+ H + + K++ R+ Sbjct: 137 MEIHKEKIDAAARAKEISEVIFHNNDDIKFMRFLSNEYEQMLQETAPGKLRFFKRDRERD 196 Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 AIL L+ G GLR+SEA SLT +I +++ KGDK + + + EY + Sbjct: 197 IAILSLILGTGLRVSEAASLTISSINFRTRYIKVIRKGDKKSSILATQTALDDVQEYLKV 256 Query: 217 ------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 CP D ++ + + ++G + ++ Q+ + R + H LRH++A Sbjct: 257 RANRYKCPNDEDI-LFVTNYKGSYAQ-ISVNAIQKLTEKYTR--AFDEKKSPHKLRHTYA 312 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 T+ + DL + + +GH + TT +YTN++ Sbjct: 313 TNHYNENKDLVLLANQMGHNSMETTSLYTNID 344 >gi|15645610|ref|NP_207786.1| integrase/recombinase (xerD) [Helicobacter pylori 26695] gi|2314140|gb|AAD08042.1| integrase/recombinase (xerD) [Helicobacter pylori 26695] Length = 355 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 73/276 (26%), Positives = 130/276 (47%), Gaps = 29/276 (10%) Query: 48 IFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKR 105 +FL F Y ++ + +++ R LS ++ F+ + Q S+ + + ++ F YL +KR Sbjct: 77 LFLFFNYFKDNLKLRSFRMLSEEQVINFLFEL-AQNRKPSSMAKYVMYLRQFFDYLDRKR 135 Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165 + + + + N+ K SLPR LN+K + + +L + + + RN IL ++ Sbjct: 136 RYSFDFTLKNLAFAKTKESLPRHLNDKDLKSFLKTLLDYKPATS--FEKRNKCILLIVIL 193 Query: 166 CGLRISEALSLTPQNIMDDQS--TLRIQGKGDK-----IRIVPLLPSVRKAILEYYDLCP 218 GLR E L++ ++I ++ ++ IQGKG K I+ L PS+ + + Y L Sbjct: 194 GGLRKCEVLNIELKHIQVEEQNYSILIQGKGRKERKAYIKKSLLEPSLNAWLSDEYRLKY 253 Query: 219 FDLNLNIQLPLFRGIRGKPLN--------PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 F+ LF+ + K N P +F+ + Q++ Y T H RHSFA Sbjct: 254 FN-----GAYLFKKDKQKAQNSLTLYSFIPLIFK--LAQIKHYK--QYGTGLHLFRHSFA 304 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 T + DL LGH L +T+IY + ++ Sbjct: 305 TLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHN 340 >gi|167768052|ref|ZP_02440105.1| hypothetical protein CLOSS21_02596 [Clostridium sp. SS2/1] gi|167710381|gb|EDS20960.1| hypothetical protein CLOSS21_02596 [Clostridium sp. SS2/1] gi|291561050|emb|CBL39850.1| Site-specific recombinase XerD [butyrate-producing bacterium SSC/2] Length = 322 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 70/282 (24%), Positives = 123/282 (43%), Gaps = 34/282 (12%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRSL 88 G S+ T+Q Y+ L T + IR+++ E+R++++ ++ + ++ Sbjct: 59 GCSERTIQYYKVTAEHML---------SQTEKEIRKITTDEMRSYLADYQKRNNCSNVTI 109 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 I SF +L++ +S + + +K + + ++ L D H Sbjct: 110 DNIRRNISSFFTWLEEEDYILKSPMRRIHKIKTKTVVKSVITDEGIEQLRD-------HC 162 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 T+ R+ A++ LLY G+R+ E ++L +I ++ + GKGDK R V + Sbjct: 163 TQ---IRDLAMIDLLYSTGIRVGELVNLNIGDINFEERECVVYGKGDKERRVYFDAKAKV 219 Query: 209 AILEYY----DLCPFDLNLNIQLPLFR-GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 ++EY D P L + + P R I G + +RQL R LGL H Sbjct: 220 HLMEYIESRKDKNPA-LFVTLDAPYDRLKISGVEIR-------LRQLGRELGLE-RIHPH 270 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 R + AT + G + +Q ILGH ++ TT Y VN N Sbjct: 271 KFRRTMATRAIDKGMPIEQVQKILGHSQIDTTMQYAMVNQNN 312 >gi|237750921|ref|ZP_04581401.1| site-specific recombinase [Helicobacter bilis ATCC 43879] gi|229373366|gb|EEO23757.1| site-specific recombinase [Helicobacter bilis ATCC 43879] Length = 374 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 77/272 (28%), Positives = 124/272 (45%), Gaps = 45/272 (16%) Query: 49 FLAFYTEEKITIQTIR--QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK 106 FL+ YT +++ TIR Q + T FI ++ T L+ + I + L KR Sbjct: 106 FLSIYTA-NLSLTTIRNYQFALTNFFDFIQRQNT-------LENGAAHIYNMDIVLSKRS 157 Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQA---LTLVDNVLLHTSHETKWIDARNSAILYLL 163 + S+ LP L E + L + + + H + RN I+ ++ Sbjct: 158 V--------------SHDLPEFLTEAELNAFLNALKSYDIKQKHINSVVRLRNQLIILMI 203 Query: 164 YGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD----LC 217 G R+SE L + +++ D LR++GKG+K+RIV + ++ I EYY+ L Sbjct: 204 VYSGARVSEILEIGYKDVSLEGDYYVLRLRGKGNKMRIVFIAKTL---IEEYYNNWVALR 260 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS-----TTAHTLRHSFATH 272 ++ +PLF + K P Q YI + L L AH LRHSFAT Sbjct: 261 ATFPHVADDMPLF--VNKKFHVPA--QSYIYVVIENLLLSAGIRKAKNGAHLLRHSFATM 316 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 L + DL +Q LGH + T++IYT+ +++ Sbjct: 317 LYNKSKDLILVQESLGHSSVETSRIYTHFDNQ 348 >gi|227461196|gb|ACP39543.1| putative integron integrase [uncultured microorganism] Length = 319 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 88/176 (50%), Gaps = 37/176 (21%) Query: 163 LYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIR--IVPL--LPSVRKAILEYYDLC 217 LYG G+R+ E + L Q+I + L +GKG K R ++P +P+++ + + L Sbjct: 144 LYGSGIRLMECVRLRVQDIDFVRREILVRRGKGGKDRRTMLPARAVPALQLHLAQTRMLH 203 Query: 218 PFDLNL---NIQLP--LFRGI---------------RGKPLNP--GV----------FQR 245 DL + ++ LP L R R + ++P GV QR Sbjct: 204 ERDLGVGHGSVWLPGALARKYPAAAREWIWQYVFPSRLRSVDPRSGVERRHHVDEKNLQR 263 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +R + G+ T HTLRHS ATHLL +G D+R+IQ +LGH +STT IYT+V Sbjct: 264 AVRIAAQAAGIAKHATCHTLRHSLATHLLESGSDIRTIQELLGHADVSTTMIYTHV 319 >gi|261839501|gb|ACX99266.1| phage integrase family protein [Helicobacter pylori 52] Length = 355 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 57/194 (29%), Positives = 92/194 (47%), Gaps = 14/194 (7%) Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 N N LP LN ++ ++ + + + ARN ++ ++ G+R +EAL L Sbjct: 157 NQSAGNKLPTHLNNEELEKFLEGI--DKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLK 214 Query: 178 PQNIMDDQS--TLRIQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFR 231 ++ + T+ I+GKGDK R V L + S+ K L +L P +L LF Sbjct: 215 IKDFTLENGCYTILIKGKGDKYRAVMLKAFHIESLLKEWLMERELYPVKNDL-----LFC 269 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290 +G L + + ++ + L AH LRHSFAT L DL +Q LGH Sbjct: 270 NQKGSALTQAYLYKQVERIINFADLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHA 329 Query: 291 RLSTTQIYTNVNSK 304 L+T++IYT+ + + Sbjct: 330 SLNTSRIYTHFDKQ 343 >gi|241992502|gb|ACS73585.1| IntI [uncultured bacterium] Length = 307 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 54/181 (29%), Positives = 82/181 (45%), Gaps = 45/181 (24%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV-----------RKA 209 LLYG G+R+ E + L +++ ++ + I+ GKG K R+ +LPS R+ Sbjct: 131 LLYGTGMRLMECVRLRVKDVDFGRNEILIRDGKGGKDRVT-MLPSTVAATLADHLQRRRV 189 Query: 210 ILE-----------------------------YYDLCPFDLNLNIQLPLFRGIRGKPLNP 240 I E Y C + + P +R ++ Sbjct: 190 IFEDDLAAGKAEVWLPDALAKKYPGAGTEWAWQYVFCSGSYSTD---PRSGRVRRHHIDE 246 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + QR +++ L T HTLRHSFATHLL G D+R++Q +LGH +STT IYT+ Sbjct: 247 KLLQRAMKKAVTAARLTKPATPHTLRHSFATHLLEGGYDIRTVQELLGHSDVSTTMIYTH 306 Query: 301 V 301 V Sbjct: 307 V 307 >gi|89147600|gb|ABD62659.1| integrase [uncultured bacterium] Length = 163 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 30/64 (46%), Positives = 42/64 (65%) Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L QR + + R G+ + T HTLRHSFATHLL +G D+R++Q ++GH + TT I Sbjct: 99 LGEQAIQRAVHEAVRRSGIEKAATPHTLRHSFATHLLESGHDIRTVQELMGHADVKTTMI 158 Query: 298 YTNV 301 YT+V Sbjct: 159 YTHV 162 >gi|227461191|gb|ACP39542.1| putative integron integrase [uncultured microorganism] Length = 307 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 80/177 (45%), Gaps = 37/177 (20%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEY------- 213 LLYG GLR+ E + L ++I +Q L I+ GKG K R+ L + + + E+ Sbjct: 131 LLYGSGLRLLECVRLRVKDISFEQHQLTIRDGKGAKDRVTMLPDQLVEPLGEHLQRARRL 190 Query: 214 ---------------------YDLCPFDLNLNIQLPLFR-------GIRGKP-LNPGVFQ 244 Y + P R G+R + ++ Q Sbjct: 191 HQDDLERGCGAVYLPTALERKYPNASAEWGWQYVFPAERLSVDPRSGVRRRHHVSESGLQ 250 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + +R+ G+ + HT RHSFATHLL NG D+R++Q +LGH + TT IYT+V Sbjct: 251 KAVRRAVLASGVQKPASCHTFRHSFATHLLENGYDIRTVQELLGHADVRTTMIYTHV 307 >gi|218754647|ref|ZP_03533443.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis GM 1503] gi|289763070|ref|ZP_06522448.1| integrase/recombinase xerC [Mycobacterium tuberculosis GM 1503] gi|289710576|gb|EFD74592.1| integrase/recombinase xerC [Mycobacterium tuberculosis GM 1503] Length = 285 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 60/231 (25%), Positives = 99/231 (42%), Gaps = 18/231 (7%) Query: 62 TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121 ++ L+ + +R++++ +L R S +K+F + +R + ++ K Sbjct: 44 SLDALTLSVLRSWLAATAGAGAARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKA 103 Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 +LP L + QAL + + + + R+ I+ LLY G+R+SE L +I Sbjct: 104 RRTLPAVLRQDQALRAM-AAAESGAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDI 162 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNP 240 +R+ GKG+K R VP A+ + D + L G RG+ L+ Sbjct: 163 DTGHRLVRVLGKGNKQRTVPFGQPAADALHAWLVDGRRALVTAESGHALLLGARGRRLD- 221 Query: 241 GVFQRYIRQLRRYL--------GLPLSTTAHTLRHSFATHLLSNGGDLRSI 283 +RQ R + G P H LRHS ATHLL G DLR + Sbjct: 222 ------VRQARTAVHQTVAAVDGAP-DMGPHGLRHSAATHLLEGGADLRVV 265 >gi|186473704|ref|YP_001861046.1| integrase family protein [Burkholderia phymatum STM815] gi|184196036|gb|ACC74000.1| integrase family protein [Burkholderia phymatum STM815] Length = 336 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 79/303 (26%), Positives = 121/303 (39%), Gaps = 25/303 (8%) Query: 16 KERQNWLQNLEIERGL-----SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70 +E + LQ IER + S T++SY R L + + T+ +L T Sbjct: 9 QEFASLLQRFFIERLMQQQNASARTVESYRDTFRMLLTYAQRVLHKPPEKFTLDELDVTL 68 Query: 71 IRAFISKRRTQKIGD-RSLKRSLSGIKSFLKYLKKR---KITTESNILNMRNLKKSNSLP 126 I AF+ T + RS LS I++F Y+ R + IL++ + L Sbjct: 69 ITAFLDHLETARSNSIRSRNARLSAIRTFYHYVTMRCPQALHLAQQILSIPTKRFERPLL 128 Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQ 185 L+ ++ + LL W R+ +L LLY G R+SE + ++ + Sbjct: 129 GFLSREEV-----HALLGAPDPDTWFGQRDRLLLMLLYNTGARVSELTGMRVADVTLAAT 183 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-PGVFQ 244 +R+ GKG K R VPL AI + D L + L G P+ V + Sbjct: 184 PWVRLHGKGRKQRAVPLWRETAAAIRTWIR----DQGLQPEQSLLPSRHGGPMTRANVAE 239 Query: 245 RYIRQLRRYLG-----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 R+ L L T H++RH+ ATHLL G + + LGH TT Y Sbjct: 240 RFSLALMAAAKTCPSLLKRHITPHSMRHTVATHLLQAGVGITEVALWLGHESPLTTHGYV 299 Query: 300 NVN 302 + Sbjct: 300 EAD 302 >gi|89147448|gb|ABD62584.1| integrase [uncultured bacterium] Length = 163 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 47/76 (61%) Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285 Q P +R ++ V Q+ +++ G+ + HTLRHSFATHLL G D+R++Q Sbjct: 87 QDPKLGVVRRHHMSENVVQKAVKKAVEQTGILKRISCHTLRHSFATHLLQRGQDIRTVQE 146 Query: 286 ILGHFRLSTTQIYTNV 301 +LGH +STT IYT+V Sbjct: 147 LLGHSDVSTTMIYTHV 162 >gi|223369816|gb|ACM88777.1| integrase [uncultured bacterium] Length = 163 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 38/101 (37%), Positives = 50/101 (49%), Gaps = 8/101 (7%) Query: 209 AILEYYDLCPFDLNLNIQLPLFR--------GIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 AI Y D P +R IR + V R ++Q R + Sbjct: 62 AIARKYPRAAHDWGWKFVFPAYRYSADPRTGVIRRHHVYEDVLIRAVKQAARAADINKHV 121 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + HTLRHSFATHLL G D+R++Q +LGH +STT IYT+V Sbjct: 122 SCHTLRHSFATHLLEGGYDIRTVQELLGHADVSTTMIYTHV 162 >gi|213579719|ref|ZP_03361545.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 167 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 44/130 (33%), Positives = 68/130 (52%), Gaps = 2/130 (1%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ A+L ++YG GLR+SE + L +++ D + + GKG K R +P+ + I + Sbjct: 39 RDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVTWIEHWL 98 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 DL L + + LF GK ++ Q+ + GL H LRHSFATH+L Sbjct: 99 DLR--GLFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHML 156 Query: 275 SNGGDLRSIQ 284 + GDLR +Q Sbjct: 157 ESSGDLRGVQ 166 >gi|322420470|ref|YP_004199693.1| integrase family protein [Geobacter sp. M18] gi|320126857|gb|ADW14417.1| integrase family protein [Geobacter sp. M18] Length = 304 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 55/215 (25%), Positives = 97/215 (45%), Gaps = 5/215 (2%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 SL R + +++F + + + ++ ++R + LP L + L+ + T Sbjct: 83 SLHRMKAAVRAFFAWASEAGVVDDNPARSIRMHRLPRKLPVFLTTAEKKRLLKELKGRTD 142 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 T R+ A++ +L G G+R+ E +L +I D LR++ KG+ ++ + + Sbjct: 143 FST----LRDRAMIEVLLGTGIRLGELAALNLDDIDLDAKHLRVRAKGNVPQVKFIKTDL 198 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 R + Y ++ G+ + R LR+ G+ T H LR Sbjct: 199 RTLLRRYLAERRRHSRPEMEALFLSNRDGRLCQRQIANRLAHWLRKA-GIEKELTPHGLR 257 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 H+FATHL DL +Q LGH +STTQIYT++ Sbjct: 258 HTFATHLYCATNDLLVVQRALGHRDVSTTQIYTHL 292 >gi|305432060|ref|ZP_07401227.1| phage integrase family site-specific recombinase [Campylobacter coli JV20] gi|304445144|gb|EFM37790.1| phage integrase family site-specific recombinase [Campylobacter coli JV20] Length = 368 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 66/236 (27%), Positives = 116/236 (49%), Gaps = 20/236 (8%) Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTE-SNILN--MRNL-----KKSNSLPRALNE 131 T + D S K + +F +L K+ E ++I N ++N K LP +NE Sbjct: 125 TGALSDASKKNYRIAVINFFDFLDKQNEEDEKAHIFNIVLKNWGGITGSKGAKLPEFMNE 184 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLR 189 + ++ + + + K RN I+ ++ G+R+SEA+++ ++I ++ +R Sbjct: 185 DELKKFLEAI---ENSDFKNNTIRNKLIIKIIIFTGIRVSEAINIKLKDISEENELYIIR 241 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIR 248 I+ KG+K R+V ++K ++E+ L +N L+ LF GK L R + Sbjct: 242 IRAKGNKYRVVM----IKKELIEHL-LKDVRVNYLSEDGLLFVNRNGKALTQAYVSRIVE 296 Query: 249 QLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 Q+ G+ AH LRH+FAT L DL +Q LGH L+T++IYT+ ++ Sbjct: 297 QILFRAGIRKQKNGAHMLRHTFATLLYKKQKDLVLVQEALGHANLNTSRIYTHFDN 352 >gi|295110002|emb|CBL23955.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162] Length = 354 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 70/287 (24%), Positives = 129/287 (44%), Gaps = 34/287 (11%) Query: 38 SYECDTRQFLIFL-----AF--YTEEKITIQTIRQL------SYTE-IRAFISKRRTQKI 83 SY D R F FL F Y ++ + Q+ Y E ++ + + +T+ Sbjct: 51 SYAYDIRIFFQFLLDENPVFKNYAMTDFSVDVLDQIKAIDLEEYMEYLKVYQNGDKTETN 110 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNV 141 G+R LKR +S ++SF Y KR++ SN + ++ K S+ R ++ AL L + Sbjct: 111 GERGLKRKISALRSFYAYYYKREMI-HSNPTVLIDVPKIHDKSIIRLDTDEVALLL--DY 167 Query: 142 LLH-----TSHETKWID---ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 + H T + + + R+ AI+ LL G G+R+SE + L +++ + +++ K Sbjct: 168 IEHCGDSLTGQKRVYYEKTKERDLAIVTLLLGTGIRVSECVGLDIEDVDFKNNGIKVTRK 227 Query: 194 GDKIRIVPLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 G +V V KA+ Y + + P + LF + K + + +++ Sbjct: 228 GGNEMVVYFGEEVEKALKRYLEVRAGITPL---AGHEHALFYSAQRKRMGVQAVENMVKK 284 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 R + T H LR ++ T L GD+ + +LGH ++TT+ Sbjct: 285 YSRQITTTKKITPHKLRSTYGTALYQETGDIYLVADVLGHKDVNTTK 331 >gi|241992604|gb|ACS73657.1| IntI [uncultured bacterium] Length = 314 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 54/181 (29%), Positives = 82/181 (45%), Gaps = 45/181 (24%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV-----------RKA 209 LLYG G+R+ E + L +++ ++ + I+ GKG K R+ +LPS R+ Sbjct: 138 LLYGTGMRLMECVRLRVKDVDFGRNEILIRDGKGGKDRVT-MLPSTVAATLADHLQRRRV 196 Query: 210 ILE-----------------------------YYDLCPFDLNLNIQLPLFRGIRGKPLNP 240 I E Y C + + P +R ++ Sbjct: 197 IFEDDLAAGKAEVWLPDALAKKYPGAGTEWAWQYVFCSGSYSTD---PRSGRVRRHHIDE 253 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + QR +++ L T HTLRHSFATHLL G D+R++Q +LGH +STT IYT+ Sbjct: 254 KLLQRAMKKAVTAARLTKPATPHTLRHSFATHLLEGGYDIRTVQELLGHSDVSTTMIYTH 313 Query: 301 V 301 V Sbjct: 314 V 314 >gi|183981455|ref|YP_001849746.1| site-specific integrase [Mycobacterium marinum M] gi|183174781|gb|ACC39891.1| site-specific integrase [Mycobacterium marinum M] Length = 359 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 61/241 (25%), Positives = 105/241 (43%), Gaps = 24/241 (9%) Query: 62 TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121 R++ + R+ + R ++ R + L L + K K ++ + ++ Sbjct: 122 AFREMRDPDARSLVGSSRAARLRSRGERSGL------LAHTAKPKSRSQLRV------RE 169 Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 LPR L+ +++ L+ + W R+ AI L+ GLR +E L L +I Sbjct: 170 PRWLPRGLSREESAALLGSF-------RSW---RDRAIGGLMLLSGLRSAEVLGLRVSDI 219 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNP 240 + +R+ GKG K R VP+ V AI Y + + + + +G RG+PL Sbjct: 220 DIARRWVRVLGKGGKERSVPIDTDVAGAIQTYLLAERPETDADELFVVAKGAHRGRPLTA 279 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + R R G+ + H LRHSF T L G DL IQ+++GH + + Y + Sbjct: 280 AGLRTVFRYHRERSGVA-AGHPHALRHSFGTALAEAGVDLSVIQALMGHDHVDSAAAYIH 338 Query: 301 V 301 + Sbjct: 339 L 339 >gi|170697418|ref|ZP_02888509.1| integrase family protein [Burkholderia ambifaria IOP40-10] gi|170137597|gb|EDT05834.1| integrase family protein [Burkholderia ambifaria IOP40-10] Length = 609 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 82/328 (25%), Positives = 135/328 (41%), Gaps = 65/328 (19%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS---KRRTQKIG 84 ERG++ +++ +C+ + FLA +E R + R F +Q+ Sbjct: 271 ERGVALSSMRVEDCEA--YKAFLAAPSERFTGPPGAR--TSGRWRPFAPGGLAPESQRYA 326 Query: 85 DRSLKRSLSGIKSFLKYLKK---RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 R+++ + + + + ++YL + +T S + +R L+ +LP AL + +TL + Sbjct: 327 IRTIRAAFTWLVA-VRYLAGNPWQAVTDPSVVRRVRKLQVERALPLALWTRVRVTLAERG 385 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----MDDQST----LRIQGK 193 L + +W AR A+L ++ GLRI+EA + + DD + L + GK Sbjct: 386 ELQSPSGPRWRAAR--ALLLIMGDGGLRIAEAAAAERATLHWLPADDDAPASWLLEVIGK 443 Query: 194 GDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLF----------------RG 232 G+K R VP+ A+ ++ D D + PL Sbjct: 444 GNKQRFVPISDECVDALRAHWRDRALDFDAADSAGPLVAPLILPPTPRAREKFGVEVDAN 503 Query: 233 IRGKPLNPGVF---------QRYIRQL-----------RRYLGLPLSTTAHTLRHSFATH 272 GKP PG + Q I QL RR L ST+ H RH+ T Sbjct: 504 TEGKPTKPGGYSVRGARGLTQWAIAQLLDVMPDLSEAERRKLA---STSPHAFRHTVGTQ 560 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTN 300 +L+ G L +Q LGH L TT IY + Sbjct: 561 MLAAGVALEVVQRTLGHASLGTTSIYVS 588 >gi|44004569|ref|NP_982238.1| integrase/recombinase, putative [Bacillus cereus ATCC 10987] gi|208702025|ref|YP_002267328.1| integrase/recombinase, putative [Bacillus cereus H3081.97] gi|217956830|ref|YP_002335924.1| integrase/recombinase, putative [Bacillus cereus AH187] gi|42741635|gb|AAS45080.1| integrase/recombinase, putative [Bacillus cereus ATCC 10987] gi|208657880|gb|ACI30250.1| integrase/recombinase, putative [Bacillus cereus H3081.97] gi|217068527|gb|ACJ82775.1| putative integrase/recombinase [Bacillus cereus AH187] Length = 347 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 124/287 (43%), Gaps = 41/287 (14%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 S+ T Q Y D FL ++ K TI TI++LS+ ++ + + ++K +L+R Sbjct: 62 SERTKQQYLHDLSHFLRYI------KETIGTIQELSHNDMEIYFYQL-SKKYAATTLRRK 114 Query: 92 LSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 + ++ FLKY+ ++ S+ L ++KK + R L ++ N +L T +T Sbjct: 115 KTVVQQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLFPEEV-----NEILDTLKKT 169 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIVPLLPS 205 + ++ +LL GLRI E + ++ S LR+ GKG+K R V + Sbjct: 170 NFF---MYSLFFLLTTTGLRIEEVANAKWADLAFHPSLNVYLLRVVGKGNKTREVRIFED 226 Query: 206 VRKAILEYYDLCPF--------DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 V DLC +L+ + G +Y+ + LP Sbjct: 227 VLN------DLCRLRQLRKQTSELDASSSSAFLPKADGSHYRADYLSKYVAEKIEETNLP 280 Query: 258 L------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 T HT RH FA HL+ G +L+ I+ LGH + TT+ Y Sbjct: 281 FLRYRKDRITPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERY 327 >gi|300112795|ref|YP_003759370.1| integron integrase [Nitrosococcus watsonii C-113] gi|299538732|gb|ADJ27049.1| integron integrase [Nitrosococcus watsonii C-113] Length = 327 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 62/197 (31%), Positives = 89/197 (45%), Gaps = 45/197 (22%) Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQGKGDKIRIVPLLPS 205 + KW+ A LLYG GLR+ E + L ++ Q T+R GKG K + L Sbjct: 127 QGKWVMAS------LLYGSGLRLMECMRLRVEDADFHYHQITVR-DGKGRKDWVTVLPKK 179 Query: 206 VRKAI---------LEYYDL---C-----PFDL-------NLNIQLPLFRGIRGKPLNP- 240 + K + L DL C P+ L N P + ++P Sbjct: 180 LFKPLQVQLKTVKALHQQDLREGCGAVYLPYALEKKYPNANREFGWPYVFPACKRAIDPS 239 Query: 241 -GVFQRY----------IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289 GV +R+ ++ R G+ + HT RHSFATHLL NG D+R+IQ +LGH Sbjct: 240 SGVVRRHHLSETALQQAVKNAIRKAGINKPGSCHTFRHSFATHLLENGYDIRTIQELLGH 299 Query: 290 FRLSTTQIYTNVNSKNG 306 ++TT IYT+V + G Sbjct: 300 KDVNTTMIYTHVLERGG 316 >gi|299144869|ref|ZP_07037937.1| integrase/recombinase, phage integrase family [Bacteroides sp. 3_1_23] gi|298515360|gb|EFI39241.1| integrase/recombinase, phage integrase family [Bacteroides sp. 3_1_23] Length = 330 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 68/283 (24%), Positives = 125/283 (44%), Gaps = 36/283 (12%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS----KRRTQKIGD 85 G S+ TL Y + L+ L+ I ++ ++IRA++S + ++ K+ Sbjct: 67 GCSEKTLAYYRNTIERLLLTLSI---------AICHITTSDIRAYLSDYQEEHQSSKVTM 117 Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 +++R S SF +L+ +S + + +K + + L+++Q L D+ Sbjct: 118 DNMRRIFS---SFFAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQLRDSC---- 170 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 + R+ A++ +L G+R+ E + L ++I + + GKG+K RIV Sbjct: 171 ------TNKRDLALIDILSSTGIRVGELVKLNREDIDFHERQCVVFGKGNKERIVYFNAR 224 Query: 206 VRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 + + +Y D D L +++ LP R L + IR L + L +P Sbjct: 225 TKLHLQQYLDERTDDNPALFVSLHLPHTR------LTISGVEVRIRDLGKSLSMP-KVHP 277 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 H R + AT + G + +Q +LGH R+ TT Y VN N Sbjct: 278 HKFRRTLATMAIDKGMPIEQVQRLLGHVRIDTTLHYAIVNQNN 320 >gi|41408850|ref|NP_961686.1| hypothetical protein MAP2752 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397209|gb|AAS05069.1| hypothetical protein MAP_2752 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 381 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 77/303 (25%), Positives = 128/303 (42%), Gaps = 51/303 (16%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 LP + +E+ W++ RGLS T+ R+ E++T + Sbjct: 18 GELPPLQRYEI------WMKG----RGLSARTITDSMLTLRRL---------ERVTRRPA 58 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL-NMRNLKKS 122 ++ I F++ + +G RS + F ++L NI+ + + Sbjct: 59 HAVAALAISRFLAD---EALGPRSRYTYHVQLAGFFRWLANED--GAPNIMAQIPRPRLP 113 Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 S+PR + Q L+ V +H R ++ L GLR E + Q++ Sbjct: 114 RSVPRPITTGQLQALL-AVRMHK---------RTRVMILLAAFAGLRAHEIAKVRGQDVD 163 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP---FDLNLNIQLPLFRGIRGKP-L 238 D TL + GKG +PL P ++E + P + N + P G+ L Sbjct: 164 PDARTLHVVGKGGHAATIPLHP----VLVEAAETMPRHGWWFPANSRRP------GQHVL 213 Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + GV +RR G+P TAH LRH + T L+++G DLR+ Q++L H L++T IY Sbjct: 214 SRGVVDAIGDAMRRA-GIP-GGTAHRLRHWYGTTLVASGTDLRTAQTLLRHSNLASTAIY 271 Query: 299 TNV 301 T V Sbjct: 272 TEV 274 >gi|89147675|gb|ABD62696.1| integrase [uncultured bacterium] gi|89147677|gb|ABD62697.1| integrase [uncultured bacterium] Length = 163 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 43/64 (67%) Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 ++ + Q +++ G+ T HTLRHSFATHLL NG D+R++Q +LGH ++TT I Sbjct: 99 VDESMLQAAVKRAVAEAGIAKPATCHTLRHSFATHLLENGYDIRTVQELLGHKEVATTMI 158 Query: 298 YTNV 301 YT+V Sbjct: 159 YTHV 162 >gi|311694590|gb|ADP97463.1| resolvase [marine bacterium HP15] Length = 198 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 93/201 (46%), Gaps = 28/201 (13%) Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 +++P+ L + + LTL++ H H IL L++ G R+SE L++TP + + Sbjct: 7 DTMPKYLLKPEVLTLLE-AETHPMHRL---------ILDLMWCIGARVSEVLTITPASFI 56 Query: 183 DDQSTLRI------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI--- 233 DD + QG G P S++++ + + D IQ L+ G Sbjct: 57 DDGYDFGVVLKTIKQGAGR-----PSKRSLQRSPKRFIPILDRDFQTRIQSYLWMGKFRQ 111 Query: 234 --RGKPLNPGVFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289 R P+ I +L +G P HT RHSFA HLL G L+ + +LGH Sbjct: 112 DERIFPITRQAVSANIDRLIDQVGGEPPFKIGCHTFRHSFAVHLLLYGRPLKFVSQLLGH 171 Query: 290 FRLSTTQIYTNVNSKNGGDWM 310 + +T++YTNV + +G ++ Sbjct: 172 RSVESTEVYTNVLAFDGAHFL 192 >gi|296163757|ref|ZP_06846462.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295885996|gb|EFG65909.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 334 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 77/312 (24%), Positives = 127/312 (40%), Gaps = 57/312 (18%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS---K 77 +L++L R +S TL SY R L F+ + ++ LS I AF+ K Sbjct: 16 FLKHLMTHRNVSPQTLWSYRDAFRLLLQFIDTTMHIEPVALSLTHLSPAVILAFLDSLEK 75 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRK---ITTESNILNMRNLKKSNSLPRALNEKQA 134 R + R+ + L+ ++SF +++ + ++IL + + L AL+ + Sbjct: 76 ERNNAVRSRNAR--LAAVRSFFRWVAISRPDFAGLSTSILAIPTKRTDRRLICALSRPE- 132 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQG 192 +D +L T R+ A+L +Y G R+SE S+ + S + + G Sbjct: 133 ---IDAILGAPDLSTP-CGRRDHAMLLTMYNTGARVSEITSMACSQVELGGHSSFVHLHG 188 Query: 193 KGDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLN---------- 239 KG K R VPL + A+ ++ + P L LF RG+ L Sbjct: 189 KGRKERCVPLWAATADALTKWMREQNAVPTSL-------LFTNYRGEQLTRNGVDCILKK 241 Query: 240 ---------PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290 P + +++I + H +RH+ ATHLL G D+ I LGH Sbjct: 242 AIAGGVNSCPSLSKKHI-------------SPHVVRHATATHLLQAGVDISVIALWLGHE 288 Query: 291 RLSTTQIYTNVN 302 + TT IY N Sbjct: 289 SIDTTHIYMESN 300 >gi|227461207|gb|ACP39548.1| putative integron integrase [uncultured microorganism] Length = 307 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 80/177 (45%), Gaps = 37/177 (20%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEY------- 213 LLYG GLR+ E + L ++I +Q L I+ GKG K R+ L + + + E+ Sbjct: 131 LLYGSGLRLLECVRLRVKDISFEQHQLTIRDGKGAKDRVTMLPDQLVEPLGEHLQRARRL 190 Query: 214 ---------------------YDLCPFDLNLNIQLPLFR-------GIRGKP-LNPGVFQ 244 Y + P R G+R + ++ Q Sbjct: 191 HQDDLERGCGAVYLPTALERKYPNASAEWGWQYVFPAERLSVDPRSGVRRRHHVSESGLQ 250 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + +R+ G+ + HT RHSFATHLL NG D+R++Q +LGH + TT IYT+V Sbjct: 251 KAVRRAVLASGVQKPASCHTFRHSFATHLLENGYDIRTVQELLGHADVRTTMIYTHV 307 >gi|326943717|gb|AEA19610.1| Integrase [Bacillus thuringiensis serovar chinensis CT-43] Length = 368 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 75/334 (22%), Positives = 136/334 (40%), Gaps = 51/334 (15%) Query: 16 KERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFL-----AFYTEEKIT--------I 60 KE+ W ++ +E + LS TL Y + FL +L F E +T I Sbjct: 17 KEKMPWYIIEYIEEKTNLSPATLYGYLIEYEMFLHWLISSRLVFVNGEVVTVTKLHEVPI 76 Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 +T+ L +++ F S Q +++ R+ S +KS YL K RN+ Sbjct: 77 ETLEHLPLKQVKRFKSYLERQGNKTKAIIRTFSALKSLFNYLTKNTEDDNGECYFYRNVM 136 Query: 121 KSNSLPRA-LNEKQALTLVDNVLLHTSHETKWID-------------------------A 154 + + ++ + V+ H + + K++ Sbjct: 137 AKMEIHKEKIDASARAKEISEVIFHNNDDIKFMRFLSNEYEQMLKENAPGKLRFFKRDRE 196 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ AIL L+ G GLR+SE SLT +I +++ KGDK + + + EY Sbjct: 197 RDIAILSLILGTGLRVSETASLTISSINFRTRYIKVVRKGDKKSSILATQTALDDVQEYL 256 Query: 215 DL------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 + CP D + + ++G + ++ Q+ + R + H LRH+ Sbjct: 257 KVRAARYKCP-DAEDILFVTNYKGSYAQ-ISVNAIQKLTEKYTR--AFDEKKSPHKLRHT 312 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 +AT+ + DL + + +GH + TT +YTN++ Sbjct: 313 YATNHYNENKDLVLLANQMGHNSMETTSLYTNID 346 >gi|228969855|ref|ZP_04130590.1| Integrase [Bacillus thuringiensis serovar sotto str. T04001] gi|228789860|gb|EEM37707.1| Integrase [Bacillus thuringiensis serovar sotto str. T04001] Length = 375 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 75/332 (22%), Positives = 138/332 (41%), Gaps = 49/332 (14%) Query: 16 KERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFL-----AFYTEEKIT------IQT 62 KE+ W ++ +E + LS TL Y + FL +L A E +T I+T Sbjct: 24 KEKMPWYIIEYIEEKTNLSPATLYGYLIEYEMFLQWLISSRLATTDGEVVTKIHEVPIET 83 Query: 63 IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122 + L +++ F S Q +++ R+ S +KS YL RN+ Sbjct: 84 LEHLPLKQVKRFKSYLERQGNKTKAVIRTFSALKSLFNYLTSNTEDDNGECYFYRNVMAK 143 Query: 123 NSLPRA-LNEKQALTLVDNVLLHTSHETKWID-------------------------ARN 156 + + ++ + V+ H + + K++ R+ Sbjct: 144 MEIHKEKIDAAARAKEISEVIFHNNDDIKFMRFLSNEYEQMLQETAPGKLRFFKRDRERD 203 Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 AIL L+ G GLR+SEA SLT +I +++ KGDK + + + EY + Sbjct: 204 IAILSLILGTGLRVSEAASLTISSINFRTRYIKVIRKGDKKSSILATQTALDDVQEYLKV 263 Query: 217 ------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 CP D ++ + + ++G + ++ Q+ + R + H LRH++A Sbjct: 264 RANRYKCPNDEDI-LFVTNYKGSYAQ-ISVNAIQKLTEKYTR--AFDEKKSPHKLRHTYA 319 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 T+ + DL + + +GH + TT +YTN++ Sbjct: 320 TNHYNENKDLVLLANQMGHNSMETTSLYTNID 351 >gi|167628714|ref|YP_001679213.1| phage recombinase [Heliobacterium modesticaldum Ice1] gi|167591454|gb|ABZ83202.1| phage recombinase [Heliobacterium modesticaldum Ice1] Length = 349 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 72/307 (23%), Positives = 136/307 (44%), Gaps = 35/307 (11%) Query: 29 RGLSKLTLQSYECDTR---QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85 +G S+ T+ SY+ + FL+ EKIT +++ ++ ++ R Sbjct: 22 KGYSQNTITSYQYAFQLLYDFLLEEKGLPPEKITFKSLSSEIISKYLTWLEVNRGCSPAT 81 Query: 86 RSLKRSLSGIKSFLKYLKKRKITT----ESNILNM--RNLKKSNSLPRALNEKQALTLVD 139 R+L+R+ I SF K+ K+ + S++ + +N K+ + E+ A Sbjct: 82 RNLRRT--AISSFSKFALKKNLGEALQFHSSVAEIPPKNTHKNTDIKYFTKEEIA----- 134 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIR 198 ++L+ + I R+ +L LLY G R E LT +I + ++ +R+ GKG+K R Sbjct: 135 -IILNMPDTGRAIGKRDVMLLSLLYASGARAQELCDLTLNDIYLGKETNIRLVGKGNKAR 193 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP------LFRGIRGKPLNPGVFQRYIRQ--L 250 +V + + + Y + NL+ P +F + ++ + +++ + Sbjct: 194 LVTIPQNCAVMLKNYLE----SRNLDSSSPKDRLKHIFSSQTNEKMSISCVEEIVKKYVI 249 Query: 251 RRYLGLPL-----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + P + T H+ RHS A H+L G L I++ LGH + TT IY NV + Sbjct: 250 KSKKAYPQLFKRKTYTPHSFRHSIAVHMLECGESLVVIKAFLGHTSIMTTTIYANVTPEL 309 Query: 306 GGDWMME 312 ++ E Sbjct: 310 ANKYLRE 316 >gi|89147371|gb|ABD62546.1| integrase [uncultured bacterium] Length = 163 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 45/74 (60%) Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 P +R L+ Q+ +++ +P T HT RHSFATHLL +G D+R++Q +L Sbjct: 89 PRSGAVRRHHLDESGLQKAVKRAAELAQIPKRVTCHTFRHSFATHLLEDGYDIRTVQELL 148 Query: 288 GHFRLSTTQIYTNV 301 GH +STT IYT+V Sbjct: 149 GHRDVSTTMIYTHV 162 >gi|223369832|gb|ACM88785.1| integrase [uncultured bacterium] Length = 163 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 45/69 (65%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 +R + + QR +++ R G+ + HTLRHSFATHLL +G D+R+IQ +LGH + Sbjct: 94 VRRHHASEDMLQRSVKKAIREAGISKHASCHTLRHSFATHLLEDGYDIRTIQELLGHADV 153 Query: 293 STTQIYTNV 301 TT IYT+V Sbjct: 154 QTTMIYTHV 162 >gi|94264575|ref|ZP_01288360.1| Phage integrase:Phage integrase, N-terminal SAM-like [delta proteobacterium MLMS-1] gi|93454993|gb|EAT05227.1| Phage integrase:Phage integrase, N-terminal SAM-like [delta proteobacterium MLMS-1] Length = 420 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 70/272 (25%), Positives = 128/272 (47%), Gaps = 34/272 (12%) Query: 45 QFLIFLAFYTEEKITIQTIRQLSYTEIRAFI--SKRRTQKIGDRSLKRSLSGIKSFLKYL 102 QFL +L + T + ++QL+ + F R G RS++ S +++F ++ Sbjct: 153 QFLQWLG----PQATPEGLQQLTSEAVEEFFLSYSRSMGHAGRRSMQ---SALRTFFRFC 205 Query: 103 KKRKITT---ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159 + T + + +R K + ++PR L ++QA ++D + +++ R+ AI Sbjct: 206 LHQGYTQKQLDRAVPTLRTYKLA-TVPRGLTDEQARKVLDGISRNSN-----AGQRDYAI 259 Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG---DKIRIVPLLPSVRKAILEYYD- 215 LLY G+R + +L ++I D + RI K K ++PL V +++L Y Sbjct: 260 CQLLYTYGVRGGQVRALCLEDI--DWTNDRILFKALKHGKDSLLPLTVEVGQSLLSYLQN 317 Query: 216 ---LCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFA 270 C + ++ L ++ P +R + + R+IR G+ + AH RH FA Sbjct: 318 ARPPCRYSEVFLTVRAP-YRPLPNSSTLAVIVDRHIRAA----GIDSHAKGAHVFRHGFA 372 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 T +L G L+ + +LGH L+TT IY V+ Sbjct: 373 TRMLQEGHSLKKVADVLGHRHLATTFIYAKVD 404 >gi|89147657|gb|ABD62687.1| integrase [uncultured bacterium] Length = 163 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 43/64 (67%) Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 ++ V Q+ ++Q G+ T HT RHSFATHLL +G D+R++Q +LGH ++TT I Sbjct: 99 VHESVLQKVVKQAVHKAGVSKPATPHTFRHSFATHLLEDGYDIRTVQELLGHSDVTTTMI 158 Query: 298 YTNV 301 YT+V Sbjct: 159 YTHV 162 >gi|330822390|ref|YP_004362611.1| Phage integrase family protein [Burkholderia gladioli BSR3] gi|327374227|gb|AEA65581.1| Phage integrase family protein [Burkholderia gladioli BSR3] Length = 770 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 81/178 (45%), Gaps = 34/178 (19%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNI--------MDDQSTLRIQGKGDKIRIVP----- 201 R++ +L L Y G+R +E + T ++ ++D LR+ GKG + R VP Sbjct: 467 RDAFVLLLAYATGMRRAELAAATTGDLSRKALDGALEDAYVLRVDGKGRRRREVPMPARL 526 Query: 202 --LLPSVRKAILEYYDL--CPFDLNLNIQLPLFRGIRGKPLNP--------GVFQRYIRQ 249 LL + +A E L P D L L + G L+P G+F R + Sbjct: 527 MDLLRAELRARAEPLSLETAPADTPLVAHL-----VTGAALHPNTIGALFKGIFARAAER 581 Query: 250 LR-RYLGLPLS---TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 L Y G + H LRH+FA H L G D+R +QS+LGH L+TT Y ++ Sbjct: 582 LAPSYPGAAADLQRASTHWLRHTFANHGLDAGADIRDMQSLLGHASLATTTHYAKGDA 639 >gi|317013308|gb|ADU83916.1| integrase/recombinase (xerD) [Helicobacter pylori Lithuania75] Length = 355 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 73/276 (26%), Positives = 130/276 (47%), Gaps = 29/276 (10%) Query: 48 IFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKR 105 +FL F Y ++ + +++ R LS ++ F+ + Q S+ + + ++ F YL +KR Sbjct: 77 LFLFFNYFKDNLKLRSFRMLSEEQVINFLFEL-AQNRKPSSMAKYVMYLRQFFDYLDRKR 135 Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165 + + + + N+ K SLPR LN+K + + +L + + + RN IL ++ Sbjct: 136 RYSFDFTLKNLAFAKTKESLPRHLNDKDLKSFLKTLLDYKPATS--FEKRNKCILLIVIL 193 Query: 166 CGLRISEALSLTPQNIMDDQS--TLRIQGKGDK-----IRIVPLLPSVRKAILEYYDLCP 218 GLR E L++ ++I ++ ++ IQGKG K I+ L PS+ + + Y L Sbjct: 194 GGLRKYEVLNIELKHIQVEEQNYSILIQGKGRKERKAYIKKSLLEPSLNAWLSDEYRLKY 253 Query: 219 FDLNLNIQLPLFRGIRGKPLN--------PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 F+ LF+ + K N P +F+ + Q++ Y T H RHSFA Sbjct: 254 FN-----GAYLFKKDKQKAQNSLTLYNFIPLIFK--LAQIKHYK--QYGTGLHLFRHSFA 304 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 T + DL LGH L +T+IY + ++ Sbjct: 305 TLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHN 340 >gi|89147365|gb|ABD62543.1| integrase [uncultured bacterium] Length = 163 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 30/64 (46%), Positives = 43/64 (67%) Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 ++ V QR ++ R + + HTLRHSFATHLL +G D+R++Q +LGH +STT I Sbjct: 99 ISESVLQRVVKGAVRRANIAKPASCHTLRHSFATHLLEDGYDIRTVQELLGHKDVSTTMI 158 Query: 298 YTNV 301 YT+V Sbjct: 159 YTHV 162 >gi|268609386|ref|ZP_06143113.1| putative integrase [Ruminococcus flavefaciens FD-1] Length = 328 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 60/249 (24%), Positives = 116/249 (46%), Gaps = 25/249 (10%) Query: 63 IRQLSYTEIRAFI----SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118 I+ ++ ++RA++ +++++ K+ +++R LS SF +L+ +S + + N Sbjct: 89 IKHITTDDLRAYLTDYQAEKKSSKVTMDNIRRILS---SFFSWLEDEDYIIKSPVRRIHN 145 Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178 +K S ++ ++ + DN ++ R+ A++ +L G+R+ E + L Sbjct: 146 VKTSKTIKETYTDENLELMRDNC----------VELRDLAMIDMLASTGMRVGEMVLLNR 195 Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG--K 236 +I ++ + GKGDK R+V + K L+ Y D + LF +R K Sbjct: 196 SDIDFNERECVVVGKGDKERMV-YFDARTKLHLQSYLASRTDSD----SALFVSLRSPHK 250 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 L G + +R++ R LG+ H R + AT + G + +Q +LGH R+ TT Sbjct: 251 RLTIGAIELRLREMGRKLGIS-KVHPHKFRRTLATMAIDKGMPIEQLQRLLGHQRIDTTL 309 Query: 297 IYTNVNSKN 305 Y V N Sbjct: 310 QYAMVKQSN 318 >gi|89147661|gb|ABD62689.1| integrase [uncultured bacterium] Length = 163 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 30/63 (47%), Positives = 42/63 (66%) Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + V Q +++ R G+ + T HT RHSFATHLL N D+R++Q +LGH +STT IY Sbjct: 100 DESVLQTAVKKAVRAAGITKAATCHTFRHSFATHLLENDYDIRTVQELLGHKDVSTTMIY 159 Query: 299 TNV 301 T+V Sbjct: 160 THV 162 >gi|223369850|gb|ACM88794.1| integrase [uncultured bacterium] Length = 163 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 31/64 (48%), Positives = 41/64 (64%) Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L+ QR +R+ G+ T HT RHSFATHLL G D+R++Q +LGH L+TT I Sbjct: 99 LHETAVQRAVREAVLRSGVAKRATCHTFRHSFATHLLEQGSDIRTVQELLGHSDLATTMI 158 Query: 298 YTNV 301 YT+V Sbjct: 159 YTHV 162 >gi|89147584|gb|ABD62651.1| integrase [uncultured bacterium] Length = 163 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 31/59 (52%), Positives = 40/59 (67%) Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 Q +++ R L T HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 104 LQLAVKKAVRAASLTKPATCHTLRHSFATHLLENGSDIRTVQELLGHKDVSTTMIYTHV 162 >gi|188026430|ref|ZP_02997899.1| hypothetical protein PROSTU_04138 [Providencia stuartii ATCC 25827] gi|291326773|ref|ZP_06125806.2| glutamine amidotransferase, class I [Providencia rettgeri DSM 1131] gi|188019829|gb|EDU57869.1| hypothetical protein PROSTU_04138 [Providencia stuartii ATCC 25827] gi|291312882|gb|EFE53335.1| glutamine amidotransferase, class I [Providencia rettgeri DSM 1131] Length = 337 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 72/312 (23%), Positives = 130/312 (41%), Gaps = 31/312 (9%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 ++ PEIV +Q + + L +R LS T+ Y + FL F + + Sbjct: 10 SSFPEIV-------QQFFTEYLVAQRALSPQTIACYRDALKLFLEFATSQLHRQPVAMKL 62 Query: 64 RQLSYTEIRAFISK---RRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT---TESNILNMR 117 ++ I F+ R + R+L+ L+ +++FL++ +R IT T LN+ Sbjct: 63 EDITPDLILKFLDNLELERQNTVRSRNLR--LTALRTFLRFAGRRDITALHTVERALNVP 120 Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 + L L + + ++ + W R+ + ++Y G R+SE +++ Sbjct: 121 MKRFDQPLIGHLTRPEIIAILG------APGDDWTSQRDHLLFTIIYNTGARVSEVINIR 174 Query: 178 PQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 ++ +D + + + GKG + R +PL S I + + N++ L G+ Sbjct: 175 VVDVVLDGSACVHLNGKGRRKRSIPLWKSTVGIIRAWLRT---NQNMHGDAALLPARSGQ 231 Query: 237 PLN-PGVFQRYIRQLRRYLGLPLS-----TTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290 P+ V QR + R S + H LRH+ A HLL +G I LGH Sbjct: 232 PMTRANVAQRLALAVNRAAATQPSLKTKRVSPHVLRHTTAMHLLQSGVSFNLIALWLGHE 291 Query: 291 RLSTTQIYTNVN 302 ++TT Y N Sbjct: 292 SVNTTHRYVEAN 303 >gi|89147644|gb|ABD62681.1| integrase [uncultured bacterium] Length = 163 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 33/69 (47%), Positives = 42/69 (60%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 IR + QR ++Q R L T HT RHSFATHLL G D+R++Q +LGH + Sbjct: 94 IRRHHVQDQAVQRAVKQAARDADLNKPATPHTFRHSFATHLLEGGYDIRTVQELLGHSDV 153 Query: 293 STTQIYTNV 301 STT IYT+V Sbjct: 154 STTMIYTHV 162 >gi|228924908|ref|ZP_04088061.1| Integrase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228834752|gb|EEM80238.1| Integrase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 371 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 73/332 (21%), Positives = 139/332 (41%), Gaps = 49/332 (14%) Query: 16 KERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFL----------AFYTE-EKITIQT 62 KE+ W ++ +E + LS TL Y + FL +L TE ++TI+T Sbjct: 24 KEKMPWYIIEYIEEKTNLSPATLYGYLIEYEMFLQWLITSRLATVDGKVVTEIHEVTIET 83 Query: 63 IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122 + L +++ F S Q +++ R+ S +KS YL RN+ Sbjct: 84 LEHLPLKQVKRFKSYLERQGNKTKAVIRTFSALKSLFNYLTSNTEDDNGECYFYRNVMAK 143 Query: 123 NSLPRA-LNEKQALTLVDNVLLHTSHETKWID-------------------------ARN 156 + + ++ + V+ H + + K++ R+ Sbjct: 144 MEIHKEKIDAAARAKEISEVIFHNNDDIKFMRFLSIEYEKMLQETAPGKLRFFKRDRERD 203 Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 AIL L+ G GLR+SEA SLT +I +++ KGDK + + + EY + Sbjct: 204 IAILSLILGTGLRVSEAASLTISSINFRTRYIKVVRKGDKKSSILATQTALDDVQEYLKV 263 Query: 217 ------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 CP + ++ + + ++G + ++ Q+ + + + H LRH++A Sbjct: 264 RAVRYKCPDNEDI-LFVTNYKGSYAQ-ISVNAIQKLTEKYTK--AFDEKKSPHKLRHTYA 319 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 T+ + DL + + +GH + TT +YTN++ Sbjct: 320 TNHYNENKDLVLLANQMGHNSMETTSLYTNID 351 >gi|254885280|ref|ZP_05257990.1| phage integrase [Bacteroides sp. 4_3_47FAA] gi|254838073|gb|EET18382.1| phage integrase [Bacteroides sp. 4_3_47FAA] Length = 534 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 78/155 (50%), Gaps = 14/155 (9%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEY 213 RN ++ LL GLR SE +L +I + + IQ KG K + PLL SV +AI+EY Sbjct: 371 RNYTVVLLLATYGLRCSEVANLKISDIDWRKEQIHIQHAKGGKSQTFPLLHSVGEAIIEY 430 Query: 214 Y------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 DL L + P FR I ++ V + ++ G H+LRH Sbjct: 431 LRFERRNDLYNDSLFFCAKAP-FRTITCHAIHDIVRKELHDVSIKHKG------PHSLRH 483 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 S+AT L++NG ++ + +LGH + +T+IY V+ Sbjct: 484 SYATFLINNGQTMKEVGDLLGHKSIDSTRIYAKVD 518 >gi|187934545|ref|YP_001886950.1| phage integrase [Clostridium botulinum B str. Eklund 17B] gi|187722698|gb|ACD23919.1| phage integrase [Clostridium botulinum B str. Eklund 17B] Length = 335 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 78/163 (47%), Gaps = 7/163 (4%) Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202 L + ETK R A+ LL RISE ++ Q+I ++ ++++ GKG K RIV Sbjct: 170 LREACETK----REKALFELLDSTACRISEIQNIKLQDINWNEKSIKVTGKGSKERIVYF 225 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 + A+ Y D N L + + + L Q+ I++++ G+ Sbjct: 226 STRAKLALENYLKSRNDD---NNSLFISKKFHNRTLGVRSLQKTIKKIKERSGVTERVHT 282 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 H R + AT LL+ G + +Q ILGH +TTQIY ++ +N Sbjct: 283 HKFRRTQATRLLNQGMRIEGVQGILGHTTPTTTQIYAQLSQEN 325 >gi|295399108|ref|ZP_06809090.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93] gi|294978574|gb|EFG54170.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93] Length = 324 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 78/290 (26%), Positives = 128/290 (44%), Gaps = 32/290 (11%) Query: 29 RGLSKLTLQSYECDTRQFLIFL--AFYTEEKITIQT--IRQL--------SYTEIRAFIS 76 + LS TL SYE + F+ +L EE ++T IRQ YT + S Sbjct: 20 KNLSPKTLSSYEQSLKLFIAYLKNEHGIEEVDAVRTGHIRQYIAYLQERGKYTVVNREAS 79 Query: 77 K-------RR--TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127 + RR +KI + ++ + IK F +L + ++ + ++ +K Sbjct: 80 RLINRPENRRDYNKKISNVTINNYIRNIKVFFNWLHEEGEIHKNPVDKIKQIKTERKQKA 139 Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQS 186 +++++ N+LL T + RN I LL G+RI E L+LT +I + Sbjct: 140 GISQEEF-----NLLLSQFDYTTFHGYRNKVITMLLQDTGMRIGECLALTVDDIDFKHRM 194 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 L + KG K R V + + + Y D + +L LF R PL F++ Sbjct: 195 ILVKKTKGRKERYVYFSQVMARELKHYIRFK--DRYTDTEL-LFPTTRNTPLTVHSFEKQ 251 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 ++Q +GL S H +R++FA L NGGDL ++ ILGH + T+ Sbjct: 252 LKQAGERIGL--SIHPHQIRNNFARQYLLNGGDLYTLSRILGHSSVKVTE 299 >gi|228989062|ref|ZP_04149089.1| Integrase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228770690|gb|EEM19228.1| Integrase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 380 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 77/344 (22%), Positives = 144/344 (41%), Gaps = 58/344 (16%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIF-----LAFYTEEKI 58 NN+P V ++ LE++ LS TL +Y + +F + LA + Sbjct: 37 NNMPWYV-----------IEYLEMKTALSPATLYAYITEFEKFFKWIILKRLAVVNGNVV 85 Query: 59 T------IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112 T I+T++ L ++ F + + I R++ R+ S +KS KYL + Sbjct: 86 TNITDIPIETLQTLPLNDVNRFHMYLQGEGIETRAINRTFSALKSLFKYLAQNSEDEHGK 145 Query: 113 ILNMRNLKKSNSLPRALNEKQA-LTLVDNVLLHTSHETKWI------------------- 152 RN+ + L + + A V N++ + + + ++ Sbjct: 146 SYLSRNVMEKIELHKEKVDAAARADEVANIIFNDNEDVAFLRFLINDYATILKETSTRKY 205 Query: 153 ------DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 R+ A++ L+ G GLR+SE SLT +I Q T+++ KG+K + S Sbjct: 206 NYFLRDKERDIALISLILGTGLRVSELASLTLSSINFRQGTIKVTRKGNKKSSILATKSC 265 Query: 207 RKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 + EY +CP + ++ + + ++G + L+ Q + + Sbjct: 266 LDDVQEYMKVRLEKYMCPPEEDI-LFVTRYQG-KYTQLSVRAIQNLVEKYSS--AFDEKR 321 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + H LRH++AT+ DL ++ LGH + T IYTN+N++ Sbjct: 322 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNE 365 >gi|238025621|ref|YP_002909853.1| Phage integrase family protein [Burkholderia glumae BGR1] gi|237880286|gb|ACR32617.1| Phage integrase family protein [Burkholderia glumae BGR1] Length = 586 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 81/178 (45%), Gaps = 34/178 (19%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNI--------MDDQSTLRIQGKGDKIRIVP----- 201 R++ +L L Y GLR +E + T ++ ++D LR+ GKG + R VP Sbjct: 380 RDAFVLLLAYATGLRRAELAAATTGDLSRKALDGALEDAYVLRVDGKGRRRREVPMPARL 439 Query: 202 --LLPSVRKAILEYYDL--CPFDLNLNIQLPLFRGIRGKPLNP--------GVFQRYIRQ 249 LL + +A E L P D L L + G L+P G+F R + Sbjct: 440 MNLLRAELRARAEPLSLETAPADTPLVAHL-----VTGAALHPNTIGALFKGIFARAAER 494 Query: 250 LR-RYLGLPLS---TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 L Y G + H LRH+FA H L G D+R +Q++LGH L+TT Y ++ Sbjct: 495 LAPSYPGAAADLQRGSTHWLRHTFANHGLDAGADIRDMQALLGHASLATTTHYAKGDA 552 >gi|254504131|ref|ZP_05116282.1| site-specific recombinase, phage integrase family [Labrenzia alexandrii DFL-11] gi|222440202|gb|EEE46881.1| site-specific recombinase, phage integrase family [Labrenzia alexandrii DFL-11] Length = 171 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 43/119 (36%), Positives = 59/119 (49%), Gaps = 7/119 (5%) Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQ 249 QGKG K L P + + +Y+ LF G + P++PG+ R Sbjct: 38 QGKGCKDHKAMLSPDLLDVLRDYWR------EARPHGRLFPGRPKVNPISPGLLTRTFTS 91 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 +R T HTLRHSFATHLL D+R IQ +LGH +L+TT YT+V ++ D Sbjct: 92 AKRMAAFSKPATLHTLRHSFATHLLEANTDVRIIQVLLGHTKLTTTARYTHVATRTIRD 150 >gi|190015705|ref|YP_001967309.1| phage integrase family protein [Bacillus cereus] gi|116584612|gb|ABK00729.1| phage integrase family protein [Bacillus cereus] Length = 319 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 124/287 (43%), Gaps = 41/287 (14%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 S+ T Q Y D FL ++ K TI TI++LS+ ++ + + ++K +L+R Sbjct: 34 SERTKQQYLHDLSHFLRYI------KETIGTIQELSHNDMEIYFYQL-SKKYAATTLRRK 86 Query: 92 LSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 + ++ FLKY+ ++ S+ L ++KK + R L ++ N +L T +T Sbjct: 87 KTVVQQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLFPEEV-----NEILDTLKKT 141 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIVPLLPS 205 + ++ +LL GLRI E + ++ S LR+ GKG+K R V + Sbjct: 142 NFF---MYSLFFLLTTTGLRIEEVANAKWADLAFHPSLNVYLLRVVGKGNKTREVRIFED 198 Query: 206 VRKAILEYYDLCPF--------DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 V DLC +L+ + G +Y+ + LP Sbjct: 199 VLN------DLCRLRQLRKQTSELDASSSSAFLPKADGSHYRADYLSKYVAEKIEETNLP 252 Query: 258 L------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 T HT RH FA HL+ G +L+ I+ LGH + TT+ Y Sbjct: 253 FLRYRKDRITPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERY 299 >gi|254785545|ref|YP_003072974.1| site-specific recombinase, phage integrase family [Teredinibacter turnerae T7901] gi|237687332|gb|ACR14596.1| site-specific recombinase, phage integrase family [Teredinibacter turnerae T7901] Length = 325 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 23/143 (16%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 I + G R SEA +L P + +++ T + K K+R VP+ P + IL Sbjct: 186 IARVCLATGARWSEAATLKPSQVKNNKVTFS-KTKSGKVRAVPIAPELAALILN------ 238 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278 PL G F+R + +L L LP +H LRH+FA+H + NGG Sbjct: 239 -------SAPLVDGY-------SAFKRTVGKLD--LELPPGQLSHVLRHTFASHFVMNGG 282 Query: 279 DLRSIQSILGHFRLSTTQIYTNV 301 ++ ++Q ILGH + T Y ++ Sbjct: 283 NILTLQKILGHADIKMTMRYAHL 305 >gi|78356957|ref|YP_388406.1| integrase/recombinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219362|gb|ABB38711.1| integrase/recombinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 304 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/215 (25%), Positives = 97/215 (45%), Gaps = 5/215 (2%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 SL R + +++F + + + ++ ++R + LP L + L+ + T Sbjct: 83 SLHRMKAAVRAFFAWAAETGVVGDNPARSIRMHRLPRKLPVFLTTAEKKRLLKELKGRTD 142 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 T R+ A++ +L G G+R+ E +L +I D LR++ KG+ ++ + + Sbjct: 143 FST----LRDRAMIEVLLGTGIRLGELTALDMDDIDLDAKHLRVRAKGNVPQVKFIKTDL 198 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 R + Y ++ G+ + R LR+ G+ T H LR Sbjct: 199 RTLLRRYLAERRRHGRPEMEALFLSNRDGRLCQRQIANRLAHWLRKA-GIEKELTPHGLR 257 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 H+FATHL DL +Q LGH +STTQIYT++ Sbjct: 258 HTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHL 292 >gi|89147392|gb|ABD62556.1| integrase [uncultured bacterium] Length = 163 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/69 (47%), Positives = 43/69 (62%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 +R L QR I+ R G+ T HTLRHSFATHLL G D+R++Q +LGH + Sbjct: 94 VRRHHLADETIQRAIKAACRRAGITKHATPHTLRHSFATHLLQGGYDIRTVQELLGHENV 153 Query: 293 STTQIYTNV 301 +TT IYT+V Sbjct: 154 ATTMIYTHV 162 >gi|159038058|ref|YP_001537311.1| integrase family protein [Salinispora arenicola CNS-205] gi|157916893|gb|ABV98320.1| integrase family protein [Salinispora arenicola CNS-205] Length = 330 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 7/121 (5%) Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRY 246 + GKG + R+VP+ P + + + +Y D C P L RG+PL G Q Sbjct: 188 VAGKGGRPRVVPVEPELDQVLADYLDSCRRRFGSRCVRPDASLLMDRRGEPLRRGGLQYL 247 Query: 247 IRQLRRYLGL----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + R G+ P H LRH+FAT L +G I +LGH L+++Q Y V Sbjct: 248 VDSCFRRAGIGDRVPPGARLHALRHTFATRLAEDGASAAEIMRLLGHVSLASSQAYIEVT 307 Query: 303 S 303 + Sbjct: 308 A 308 >gi|218848058|ref|YP_002454802.1| integrase/recombinase, phage integrase family protein [Bacillus cereus G9842] gi|218546189|gb|ACK98582.1| integrase/recombinase, phage integrase family protein [Bacillus cereus G9842] Length = 361 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 73/326 (22%), Positives = 139/326 (42%), Gaps = 47/326 (14%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIF-----LAFYTEEKIT------IQTIRQLSYTE 70 ++ LE++ LS TL +Y + +F + LA +T I+T++ L + Sbjct: 25 IEYLEMKTALSPATLYAYITEFEKFFKWIILKRLAVVNGNVVTNITDIPIETLQTLPLND 84 Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 + F + + I R++ R+ S +KS KYL + RN+ + L + Sbjct: 85 VNRFHMYLQGEGIETRAINRTFSALKSLFKYLAQNSEDEHGKSYLSRNVMEKIELHKEKV 144 Query: 131 EKQA-LTLVDNVLLHTSHETKWI-------------------------DARNSAILYLLY 164 + A V N++ + + + ++ R+ A++ L+ Sbjct: 145 DAAARADEVANIIFNDNEDVAFLRFLINDYATILKETSTRKYNYFLRDKERDIALISLIL 204 Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD------LCP 218 G GLR+SE SLT +I Q T+++ KG+K + S + EY +CP Sbjct: 205 GTGLRVSELASLTLSSINFRQGTIKVTRKGNKKSSILATKSCLDDVQEYMKVRLEKYMCP 264 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278 + ++ + + ++G + L+ Q + + + H LRH++AT+ Sbjct: 265 PEEDI-LFVTRYQG-KYTQLSVRAIQNLVEKYSS--AFDEKRSPHKLRHTYATNHYKENK 320 Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSK 304 DL ++ LGH + T IYTN+N++ Sbjct: 321 DLVLLRDQLGHTSVEVTSIYTNINNE 346 >gi|307323013|ref|ZP_07602264.1| integrase family protein [Sinorhizobium meliloti AK83] gi|306891340|gb|EFN22275.1| integrase family protein [Sinorhizobium meliloti AK83] Length = 328 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 65/246 (26%), Positives = 106/246 (43%), Gaps = 27/246 (10%) Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPRALNEKQALTLVDNVL 142 RS L+ +KSF +YL+ R L + + K +L +L+ + L Sbjct: 77 RSRNARLAAVKSFFRYLEHRVPAVLDQALRVHAMPMKKIDEALVASLSRTEV-----QAL 131 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIV 200 L+ R+ A+L+L + GLR+SE + LT + D +S ++ I GKG + R++ Sbjct: 132 LNAPDRRSLSGIRDRAMLHLAFAGGLRVSELVGLT-LDQFDGRSPASIHIIGKGRRERVL 190 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 PL AI + + P N LF G+ + F+ YI + + ++ Sbjct: 191 PLWQETAAAIRAWIAVRP----KNGDTALFLNNAGRMMTRSGFE-YILEKHAAAAVSVAP 245 Query: 261 T-------AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 T H LRHS A H+L D+R + LGH L + +IY + +E+ Sbjct: 246 TLTTKSISPHVLRHSCAMHMLQATRDIRKVALWLGHASLQSAEIYLRADPTEK----LEM 301 Query: 314 YDQTHP 319 D P Sbjct: 302 LDALAP 307 >gi|260907656|ref|ZP_05915978.1| phage integrase family protein [Brevibacterium linens BL2] Length = 265 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 99/211 (46%), Gaps = 18/211 (8%) Query: 93 SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152 SG KS + +R+ S + L++ LP AL+ A LV TS T W Sbjct: 50 SGEKSGMLAHTRRRHQPRSAL----RLREPKKLPVALSTADATKLV------TSLRT-W- 97 Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212 R+ A+ L+ CGLR E L+L +++ + + GKG K R VPL V ++++ Sbjct: 98 --RDRAMAGLMLWCGLRSCEVLALHVKDVDIGGRWITVTGKGAKQRRVPLDADV-ASVID 154 Query: 213 YYDLCPFDLNLNIQLPLF-RGI-RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 Y L + + QL L +G RG+ L + R R G+ H LRH+F Sbjct: 155 VYLLAERPASDSDQLFLVAKGTHRGQGLTAAGLRTIFRYHRDLTGVA-GGHPHALRHTFG 213 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T L G DL +Q++LGH + TT Y ++ Sbjct: 214 TVLAEAGVDLAVMQALLGHAHVDTTARYVHL 244 >gi|126664740|ref|ZP_01735724.1| phage-related integrase [Marinobacter sp. ELB17] gi|126664867|ref|ZP_01735851.1| phage-related integrase [Marinobacter sp. ELB17] gi|126666649|ref|ZP_01737627.1| phage-related integrase [Marinobacter sp. ELB17] gi|126666883|ref|ZP_01737859.1| phage-related integrase [Marinobacter sp. ELB17] gi|126628599|gb|EAZ99220.1| phage-related integrase [Marinobacter sp. ELB17] gi|126629037|gb|EAZ99656.1| phage-related integrase [Marinobacter sp. ELB17] gi|126631066|gb|EBA01680.1| phage-related integrase [Marinobacter sp. ELB17] gi|126631193|gb|EBA01807.1| phage-related integrase [Marinobacter sp. ELB17] Length = 336 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 27/177 (15%) Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRI 199 LL T W R++A+L +LY G R+SE + + +I + +++R+ GKG K R Sbjct: 138 ALLAAPGITTWCGRRDTAMLTVLYNTGARVSELIGIRVADITLAATASVRLHGKGRKQRT 197 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYLGLPL 258 VPL K I ++ +L+++ PL G P+ V +R L L + Sbjct: 198 VPLWKETAKEIRQWLKYA----DLHVEQPLIPNRSGLPMTRTNVAER--------LNLAV 245 Query: 259 ST-------------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 ST + HT RH+ A HLL G DL I LGH TT Y + Sbjct: 246 STATKMCPQLAGRRISPHTWRHTTAMHLLQAGVDLTVIALWLGHESPVTTHGYVEAD 302 >gi|89147420|gb|ABD62570.1| integrase [uncultured bacterium] Length = 163 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 43/69 (62%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 +R L+ QR ++ +GL + H LRHSFATHLL G D+R++Q +LGH + Sbjct: 94 VRRHHLHEKALQRAVKDASLKVGLTKQMSCHVLRHSFATHLLEGGYDIRTVQELLGHADV 153 Query: 293 STTQIYTNV 301 STT IYT+V Sbjct: 154 STTMIYTHV 162 >gi|253771281|ref|YP_003034141.1| putative integrase/recombinase [Clostridium botulinum D str. 1873] gi|253721433|gb|ACT33725.1| putative integrase/recombinase [Clostridium botulinum D str. 1873] Length = 272 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 72/289 (24%), Positives = 134/289 (46%), Gaps = 51/289 (17%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE--IRAFISKRRTQKIGD 85 ++ SK T+ +Y+ D ++F+ ++ + K+ I TI + + + A + + Sbjct: 14 QKDKSKKTIYTYKNDIKRFI---EYFEKNKLEINTINMRKFKDYLLEALL-------LSP 63 Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 +++ R++ I+ FL+Y+ I + M +++ L L + + ++ Sbjct: 64 KTVNRNIIAIRQFLEYIHINNID-----IKMIKIQEQGFLEDTLTNDEVIRMI------- 111 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 K D R A + LY G+R+SEA+SL ++I ++ ++RI GKG K R + L+P Sbjct: 112 KETEKMHDLRAKAFICTLYYTGMRVSEAISLLSEDI--NKDSIRILGKGGKYRDI-LIPK 168 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRG-----KPLNPGVFQRY-----IRQLRRYLG 255 K I + Y + + N LF G G LN + ++Y I++ + Y Sbjct: 169 KLKNIWKDYMI----VRENNSDKLFTGREGGISRFTALN--IVKKYGHMAKIKKDKVY-- 220 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 H RH + +L+ G L +I+ + GH +STT IYT + K Sbjct: 221 ------NHAFRHLYCLNLVDRGIPLDAIKDLAGHKNISTTIIYTRKSKK 263 >gi|188989765|ref|YP_001901775.1| tyrosine recombinase [Xanthomonas campestris pv. campestris str. B100] gi|167731525|emb|CAP49700.1| tyrosine recombinase [Xanthomonas campestris pv. campestris] Length = 327 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 85/181 (46%), Gaps = 37/181 (20%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYD----- 215 LLYG G+R+ E L L +++ + + ++ GKG K R VPL S+R +++ + Sbjct: 131 LLYGSGMRLLECLRLRIKDVDMVRCEIVVRDGKGGKDRRVPLPRSLRGELMQQRERALLL 190 Query: 216 --LCPFDLNLNIQLP--LFRGIRGKPLNPG-----------VFQRYIRQLRRYL------ 254 + + LP L R + PG V R R R ++ Sbjct: 191 HAADLAEGAGQVFLPHALARKYPSADVEPGWQYLFPAARRSVDPRSGRVGRHHVSEEILQ 250 Query: 255 ----------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 G+ T HTLRH+FATHLL G D+R++Q +LGH ++TTQIYT+V + Sbjct: 251 RAVQAARRRAGIDKPATCHTLRHAFATHLLEAGHDIRTVQELLGHKDVATTQIYTHVLGR 310 Query: 305 N 305 Sbjct: 311 G 311 >gi|154505016|ref|ZP_02041754.1| hypothetical protein RUMGNA_02526 [Ruminococcus gnavus ATCC 29149] gi|153794686|gb|EDN77106.1| hypothetical protein RUMGNA_02526 [Ruminococcus gnavus ATCC 29149] Length = 288 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 65/290 (22%), Positives = 125/290 (43%), Gaps = 29/290 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ LE + L +S C FL + + ++L+ ++R F+ + Sbjct: 8 EKYLEQLEEAGKIRNLKDRSISCYKNYVSYFLKYQNKNP------KELTCQDVRVFLLAK 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLK---YLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 + + + +L S I+ F + ++ IT IL + LP L + Sbjct: 62 KEEGLKATTLNLYNSAIRFFYRNVLHILWDDITVPRMIL-------EHKLPTVLTASEID 114 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L+D V D + A+ ++Y G+R+SE + L +I + + ++ + Sbjct: 115 RLLDAV----------DDIKYKAMFAVMYSSGMRVSEVIHLHYDDISRSKMQINVRDTKN 164 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 ++ +L IL Y F+ + G L ++ +R+ Sbjct: 165 RMDRYTILSKRCLDILTQY---WFEKGRPRGILFPNKFTGNYLTVSTLEQVMRRAVADTE 221 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 LP + T H LRHSFATHL+ G + +IQ++LGH +T++Y +V++K+ Sbjct: 222 LPKAATPHCLRHSFATHLMEQGIERHNIQALLGHRDPKSTEVYLHVSNKS 271 >gi|89147410|gb|ABD62565.1| integrase [uncultured bacterium] Length = 167 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 40/60 (66%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 Q +R+ R + T HTLRHSFATHLL NG D+R++Q +LGH ++TT IYT+V Sbjct: 107 ALQTAVREAVRAAQVAKRATCHTLRHSFATHLLENGYDIRTVQELLGHREVATTMIYTHV 166 >gi|257439773|ref|ZP_05615528.1| tyrosine recombinase XerC [Faecalibacterium prausnitzii A2-165] gi|257197793|gb|EEU96077.1| tyrosine recombinase XerC [Faecalibacterium prausnitzii A2-165] Length = 395 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 82/315 (26%), Positives = 145/315 (46%), Gaps = 56/315 (17%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLA-----FYTEEKITIQTIRQLSYTEIRAFI 75 +++ LE+ G S T SY CD R F F+ + +I + L T + Sbjct: 26 YVRYLEVIAGKSANTAFSYYCDLRGFSRFMKRRRGLVPADTEIKDIDPKGLD-TAFWGSV 84 Query: 76 SKRR--------TQKIGDR--SLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNS 124 SK ++ G++ S R L+ + F YL + TE+ +++ K+ Sbjct: 85 SKEDIYEYLYFLNRECGNKKSSTARRLASLHGFYDYLVNQVNKLTENPTASIKPPKQDKV 144 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 LP+ L +Q++ L+++ T +++ + + R+ ++ L CG+R+SE + + +I + Sbjct: 145 LPKYLTAEQSMDLLES----TQYQSDFPE-RDYCMVVLFLNCGMRLSELVGMDLGDIDLE 199 Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP---G 241 Q +R+ GKG K R+V L + +A +QL L + + LNP Sbjct: 200 QRQIRLFGKGHKERMVYLNEACVEA---------------LQLYLAKRNTMEGLNPKEKA 244 Query: 242 VF----------QRYIRQL----RRYLGLPLSTTAHTLRHSFATHLLSNGG-DLRSIQSI 286 VF R + QL + GL +T H LRH+ AT + G D+ +++ + Sbjct: 245 VFVTRRRKERISNRRVEQLVTGAMKAAGLKGFST-HKLRHTAATLMYQTGNVDILTLKQL 303 Query: 287 LGHFRLSTTQIYTNV 301 LGH + TTQIYT++ Sbjct: 304 LGHSSVGTTQIYTHL 318 >gi|229101972|ref|ZP_04232686.1| Site-specific recombinase, phage integrase [Bacillus cereus Rock3-28] gi|228681555|gb|EEL35718.1| Site-specific recombinase, phage integrase [Bacillus cereus Rock3-28] Length = 384 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 56/226 (24%), Positives = 107/226 (47%), Gaps = 6/226 (2%) Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 +T + D ++ + +K+F+ + +++I +++ +K N+ L+ + L+ Sbjct: 132 QTVGLADETISSRIKRLKTFINWCLRQEIISKNPFNKFEGFRKDNTQIDILSVDELNNLL 191 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGD 195 +++ K R+ +L+LL RI+EAL L+P NI + IQ K Sbjct: 192 KMAKSYSNKSFKHF--RDYVLLHLLIDGMFRITEALLLSPSNIDHTNRAVIIQSNNAKSR 249 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 K R VPL + +++ + ++ +F + G+ L+ R +R+ Sbjct: 250 KSRTVPLSNKTYRLLIQLLEENE-AFEDDVDDLIFLSLSGRMLSKNNVLRDMRKYAIEAK 308 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + H +RHS ATH LS+ GD+ S++ ILGH L T IY+++ Sbjct: 309 IKKRFYLHLIRHSAATHYLSSSGDVESLRKILGHADLRTVLIYSHL 354 >gi|119855366|ref|YP_935969.1| phage integrase family protein [Mycobacterium sp. KMS] gi|119867745|ref|YP_937697.1| phage integrase family protein [Mycobacterium sp. KMS] gi|119693834|gb|ABL90907.1| phage integrase family protein [Mycobacterium sp. KMS] gi|119698083|gb|ABL95154.1| phage integrase family protein [Mycobacterium sp. KMS] Length = 364 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 74/322 (22%), Positives = 126/322 (39%), Gaps = 72/322 (22%) Query: 26 EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR------ 79 +IER S T+++Y D + + FLA + +Q ++ AF+S R Sbjct: 33 DIER--SPNTIKAYAHDLKDWFTFLAGRGPDWTAVQ------LEDVGAFVSWLRLPMALR 84 Query: 80 ----------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTE------------------- 110 G+ ++ R LS + +F Y + + Sbjct: 85 QSGIVMLPTMEHHCGEATVNRKLSALAAFYTYAARDGVAVGELLTTWQVGGSRGGWKPFL 144 Query: 111 ---SNIL----NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163 SN + M LK + LPR L +A ++D+ R+ +L +L Sbjct: 145 HHVSNRMPRSRRMVTLKTAKKLPRILTPVEAQAVLDSC----------DRLRDRFLLAVL 194 Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQ---------GKGDKIRIVPLLPSVRKAILEYY 214 Y G+R+ EAL L +I + + I+ K R VP+ P + + +Y Sbjct: 195 YDTGMRVGEALGLRHSDIAAAECEITIRRRDNDNGARAKSVSSRTVPVSPELIRLYADYL 254 Query: 215 DLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 DL+ + + + L+ G P +R+LRR G+ H LRH+ AT + Sbjct: 255 HDEYGDLDSDYVFVNLWGRPHGHPWTYAAVYDLVRRLRRRTGIDFD--PHWLRHTAATRM 312 Query: 274 LSNGGDLRSIQSILGHFRLSTT 295 L +G L + +LGH ++TT Sbjct: 313 LRDGIGLEVVAKLLGHANVTTT 334 >gi|89147434|gb|ABD62577.1| integrase [uncultured bacterium] Length = 163 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/63 (50%), Positives = 41/63 (65%) Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 +P QR I+ R L T HTLRHSFATHL+ +G D+R+IQ +LGH + TT IY Sbjct: 100 SPKTLQRAIKGAARAARLAKPVTCHTLRHSFATHLIEDGYDIRTIQELLGHTDVRTTMIY 159 Query: 299 TNV 301 T+V Sbjct: 160 THV 162 >gi|24375372|ref|NP_719415.1| phage integrase family site specific recombinase [Shewanella oneidensis MR-1] gi|24350199|gb|AAN56859.1|AE015821_4 site-specific recombinase, phage integrase family [Shewanella oneidensis MR-1] Length = 310 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 112/233 (48%), Gaps = 15/233 (6%) Query: 86 RSLKRSLSGIKSFLKY---LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 RS+ R+++ IKS +K + + + ++I ++ N+K L+ +Q L+ L Sbjct: 67 RSINRAMTAIKSIVKVAALMGEADMQQVAHINSIANMKHGAHQGNPLSAEQVTKLL--AL 124 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVP 201 L +T + R AI L G GLR SE +LT + ST+++ GKG+K RI+ Sbjct: 125 LSKRQDTYGL--RTLAIFALFLGTGLRRSELAALTLADYDSATSTIKVVAGKGNKSRILF 182 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI--RGKPLNPGVFQRYIRQLRRYLGLPLS 259 L V + ++ + ++ L I GI +P++ R ++ +G+ + Sbjct: 183 LPDWVEQHVIAWLNVRKMQLGPLICHCRTTGIIVHYRPVSRDALYRLVKDKLGDIGV-VG 241 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 + H LR +F T LL D+ +++ + GH +STT IY K G +M E Sbjct: 242 ASPHDLRRTFITRLLEQNVDINTVRQMAGHADISTTTIY----DKRGDAFMRE 290 >gi|13541557|ref|NP_111245.1| integrase/recombinase [Thermoplasma volcanium GSS1] gi|14324952|dbj|BAB59878.1| integrase / recombinase [Thermoplasma volcanium GSS1] Length = 123 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 67/127 (52%), Gaps = 4/127 (3%) Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222 ++ C LR+ EA L NI DD T+++ GKG K R+V L P ++A+++Y + + N Sbjct: 1 MFNCVLRLKEACDLKISNIYDD--TIKVLGKGQKERLVYLPPETKEALMDYLKVRTPEKN 58 Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282 L + +F K L+ F + ++ G+ H +RH++AT L +G ++ Sbjct: 59 LEDRDYVFTTASWKKLSYNYFTKICHEISIMAGVKWH--PHMVRHTYATELFKSGVNIYY 116 Query: 283 IQSILGH 289 + +LGH Sbjct: 117 VARLLGH 123 >gi|225378079|ref|ZP_03755300.1| hypothetical protein ROSEINA2194_03739 [Roseburia inulinivorans DSM 16841] gi|225210080|gb|EEG92434.1| hypothetical protein ROSEINA2194_03739 [Roseburia inulinivorans DSM 16841] Length = 349 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 54/222 (24%), Positives = 102/222 (45%), Gaps = 13/222 (5%) Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 +R LKR L+ ++SF +YL K ++ + + + K L+ + L+D V Sbjct: 108 ERGLKRKLASLRSFYRYLYKNEMIGQDPAVKVDMPKIHEKTITRLDIDEVANLLDEVESG 167 Query: 145 TSHETKW------IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 S K R+ A++ LL G G+R+SE + L ++ + ++I KG Sbjct: 168 ESLTEKQQKFHEKTKTRDLAMMTLLLGTGIRVSECVGLDMDDVDFKNNGIKIHRKGGAEV 227 Query: 199 IVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 +V VR A++EY + D ++N LF ++ K ++ ++ + + + + Sbjct: 228 VVYFGEEVRSALMEYMVERQKITAADGSVN---ALFLSLQNKRISVRSVEKMVNKYSKLV 284 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 T H LR ++ T L GD+ + +LGH ++TT+ Sbjct: 285 TSLKHITPHKLRSTYGTSLYRETGDIYLVADVLGHKDVNTTR 326 >gi|78355959|ref|YP_387408.1| integrase/recombinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218364|gb|ABB37713.1| integrase/recombinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 304 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 54/215 (25%), Positives = 97/215 (45%), Gaps = 5/215 (2%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 SL R + +++F + + + ++ ++R + LP L + L+ + Sbjct: 83 SLHRMKAAVRAFFAWASEAGVVDDNPARSIRMHRLPRKLPVFLTTAEKKRLLKEL----K 138 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 T + R+ A++ +L G G+R+ E +L +I D LR++ KG+ ++ + + Sbjct: 139 GRTDFSALRDRAMIEVLLGTGIRLGELAALDMDDIDLDAKHLRVRAKGNVPQVKFIKTDL 198 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 R + Y ++ G+ + R LR+ G+ T H LR Sbjct: 199 RTLLRRYLAERRRHGRPEMEALFLSNRDGRLCQRQIANRLAHWLRKA-GIEKELTPHGLR 257 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 H+FATHL DL +Q LGH +STTQIYT++ Sbjct: 258 HTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHL 292 >gi|158314469|ref|YP_001506977.1| integrase family protein [Frankia sp. EAN1pec] gi|158109874|gb|ABW12071.1| integrase family protein [Frankia sp. EAN1pec] Length = 377 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 15/163 (9%) Query: 155 RNSAILYLLYGCGLRISEALSL----------TPQ----NIMDDQSTLRIQGKGDKIRIV 200 R++ +L ++YG GLR +EA + P+ ++ + G G + R V Sbjct: 192 RDATVLKVIYGWGLRCNEASRIDLVDFYRNPKAPELGRFGLLHVRYGKGANGSGPRRRTV 251 Query: 201 P-LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 ++P +A+ ++ D + L+ RG L P + R L LP Sbjct: 252 ASVMPWAVEAVEDFVDNVRPRMGSREHPALWVTERGGRLKPREIEERFAAYRDALALPTE 311 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 T H LRHS+ THL+ +G D + +Q +GH ST IYT+V+ Sbjct: 312 LTPHCLRHSYVTHLIEDGADPKFVQEQVGHRYASTLGIYTHVS 354 >gi|258516804|ref|YP_003193026.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] gi|257780509|gb|ACV64403.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] Length = 348 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 61/245 (24%), Positives = 114/245 (46%), Gaps = 17/245 (6%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN--EKQALTLVDNVLLHTSHET 149 L+ +++FLKYL R ++ + +++ + + K+A++ LL + Sbjct: 90 LASLRAFLKYLSSRDVSYLHLSQSASQIERRKVYTKKVTGMSKKAVS----ALLEAPDSS 145 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNI-MD-DQSTLRIQGKGDKIRIVPLLPSVR 207 R+ A++ ++Y RI E LS+ + + +D D+ + + GK KIR + LLP Sbjct: 146 TKAGRRDIALMVVMYSTAARIDEILSMRIEQLHLDTDKPNITVIGKRGKIRTLYLLPKA- 204 Query: 208 KAILEYYDLCPFDLNLNIQLPLF----RGIRGKPLNPGV---FQRYIRQLRRYLG-LPLS 259 A L Y N +F G GK V +++ + R G +P Sbjct: 205 TAHLRAYIKDSHGATPNPSSFVFYSRNTGPAGKMSQKAVNKQLRKHAQAARSVCGEVPAE 264 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 AH LRH+ ++H L +G ++ I +LGH +L TT +Y ++ ++ + + D+ Sbjct: 265 IHAHQLRHAKSSHWLEDGMNIVQISFLLGHAQLQTTMVYLDITTEQEAKALATLEDENDK 324 Query: 320 SITQK 324 S+T+K Sbjct: 325 SLTKK 329 >gi|239917189|ref|YP_002956747.1| site-specific recombinase, integrase family [Micrococcus luteus NCTC 2665] gi|281414340|ref|ZP_06246082.1| site-specific recombinase, integrase family protein [Micrococcus luteus NCTC 2665] gi|239838396|gb|ACS30193.1| site-specific recombinase, integrase family [Micrococcus luteus NCTC 2665] Length = 312 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 61/240 (25%), Positives = 107/240 (44%), Gaps = 32/240 (13%) Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 R Q G R SG K FL ++ K K I+ L + LPR L+ + T+ Sbjct: 77 RAWQPAGGRG-----SGWKPFLHHISKGKPQARRAIV----LSAQSKLPRVLSAAEVQTI 127 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------ 191 +D H R+ + +L+ G+RI EAL L ++I +S + +Q Sbjct: 128 LDAC----DH------LRDRFLFAVLFDTGMRIGEALGLRHEDIAAAESQITVQRRVNDN 177 Query: 192 ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYI 247 K R VP+ + + +Y L DL+ + + + L+ G PL + Sbjct: 178 GARSKSCAPRTVPVSAELVRLYADYLHLEYDDLDSDYVFVNLWGRPHGHPLTYTAVYDLV 237 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL-STTQIYTNVNSKNG 306 ++LRR G+ H RH+ AT +L +G + + +LGH + +TT +Y ++++++ Sbjct: 238 KRLRRRTGIDFDP--HWYRHTAATRMLRDGVPIEVVSKLLGHADITTTTAVYGHLSAEDA 295 >gi|239918537|ref|YP_002958095.1| site-specific recombinase, integrase family [Micrococcus luteus NCTC 2665] gi|281415254|ref|ZP_06246996.1| site-specific recombinase, integrase family protein [Micrococcus luteus NCTC 2665] gi|239839744|gb|ACS31541.1| site-specific recombinase, integrase family [Micrococcus luteus NCTC 2665] Length = 395 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 61/240 (25%), Positives = 107/240 (44%), Gaps = 32/240 (13%) Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 R Q G R SG K FL ++ K K I+ L + LPR L+ + T+ Sbjct: 160 RAWQPAGGRG-----SGWKPFLHHISKGKPQARRAIV----LSAQSKLPRVLSAAEVQTI 210 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------ 191 +D H R+ + +L+ G+RI EAL L ++I +S + +Q Sbjct: 211 LDAC----DH------LRDRFLFAVLFDTGMRIGEALGLRHEDIAAAESQITVQRRVNDN 260 Query: 192 ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYI 247 K R VP+ + + +Y L DL+ + + + L+ G PL + Sbjct: 261 GARSKSCAPRTVPVSAELVRLYADYLHLEYDDLDSDYVFVNLWGRPHGHPLTYTAVYDLV 320 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL-STTQIYTNVNSKNG 306 ++LRR G+ H RH+ AT +L +G + + +LGH + +TT +Y ++++++ Sbjct: 321 KRLRRRTGIDFDP--HWYRHTAATRMLRDGVPIEVVSKLLGHADITTTTAVYGHLSAEDA 378 >gi|154504725|ref|ZP_02041463.1| hypothetical protein RUMGNA_02232 [Ruminococcus gnavus ATCC 29149] gi|153794899|gb|EDN77319.1| hypothetical protein RUMGNA_02232 [Ruminococcus gnavus ATCC 29149] Length = 288 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 65/290 (22%), Positives = 124/290 (42%), Gaps = 29/290 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ LE + L +S C FL + + ++L+ ++R F+ + Sbjct: 8 EKYLEQLEEAGKIRNLKDRSISCYKNYVSYFLKYQNKNP------KELTCQDVRVFLLAK 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLK---YLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 + + + +L S I+ F + ++ IT IL + LP L + Sbjct: 62 KEEGLKATTLNLYNSAIRFFYRNVLHILWDDITVPRMIL-------EHKLPTVLTASEID 114 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L+D V D + A+ ++Y G+R+SE + L +I + ++ + Sbjct: 115 RLLDAV----------DDIKYKAMFAVMYSSGMRVSEVIHLHYDDISRSNMQIHVRDTKN 164 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 ++ +L IL Y F+ + G L ++ +R+ Sbjct: 165 RMDRYTILSKRCLDILTQY---WFEKGRPRGILFPNKFTGNYLTVSTLEQVMRRAVADTE 221 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 LP + T H LRHSFATHL+ G + +IQ++LGH +T++Y +V++K+ Sbjct: 222 LPKAATPHCLRHSFATHLMEQGIERHNIQALLGHRDPKSTEVYLHVSNKS 271 >gi|317014808|gb|ADU82244.1| integrase/recombinase (xerD) [Helicobacter pylori Gambia94/24] Length = 356 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 73/276 (26%), Positives = 129/276 (46%), Gaps = 29/276 (10%) Query: 48 IFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKR 105 +FL F Y ++ + +++ R LS ++ F+ + Q S+ + + ++ F YL +KR Sbjct: 77 LFLFFNYFKDNLKLRSFRMLSEEQVINFLFEL-AQNRKPSSMAKYVMYLRQFFDYLDRKR 135 Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165 + + + N+ K SLPR LN+K + + +L + + + RN IL ++ Sbjct: 136 RYGFDFTLKNLAFAKTKESLPRHLNDKDLKSFLKTLLDYKPATS--FEKRNKCILLIVIL 193 Query: 166 CGLRISEALSLTPQNIMDDQS--TLRIQGKGDK-----IRIVPLLPSVRKAILEYYDLCP 218 GLR E L++ ++I ++ ++ IQGKG K I+ L PS+ + + Y L Sbjct: 194 GGLRKCEVLNIELKHIQVEEQNYSILIQGKGRKERKAYIKKSLLEPSLNAWLSDEYRLKY 253 Query: 219 FDLNLNIQLPLFRGIRGKPLN--------PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 F+ LF+ + K N P +F+ + Q++ Y T H RHSFA Sbjct: 254 FN-----GAYLFKKDKQKAQNSLTLYNFIPLIFK--LAQIKHYK--QYGTGLHLFRHSFA 304 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 T + DL LGH L +T+IY + ++ Sbjct: 305 TLIYQETQDLVLTSMALGHSSLLSTKIYIHTTQEHN 340 >gi|124265889|ref|YP_001019893.1| phage integrase [Methylibium petroleiphilum PM1] gi|124258664|gb|ABM93658.1| phage integrase [Methylibium petroleiphilum PM1] Length = 338 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 79/282 (28%), Positives = 127/282 (45%), Gaps = 53/282 (18%) Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 R + EI AF+S ++ G S ++ + Y + + + + K S Sbjct: 61 RDMGALEIEAFLSHLALER-GVASATQNQAKAALLFLYKEVLRAVDLPWLTEVVAAKTSR 119 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 LP L +++A L+ + LH +H W+ A LLYG GLR+ E L L +++ Sbjct: 120 RLPVVLTQREARELL--MQLHGAH---WLAA------SLLYGSGLRLLECLRLRVKDVEF 168 Query: 184 DQSTLRI-QGKG--DKIRIVP--LLPSVRKAILEYYDLCPFDLN-----------LNIQL 227 ++ L + QGKG D++ ++P LL +R + + L DL L ++ Sbjct: 169 ERRELVVRQGKGSKDRVTVLPENLLLPLRNQLAQARALHERDLAAGRGAVWLPDALAVKF 228 Query: 228 PLFRGIRGK-----------PLNP--GV----------FQRYIRQLRRYLGLPLSTTAHT 264 P R R ++P GV QR + R G+ + H Sbjct: 229 P--RAARAWGWQWVFPSRVLSVDPRSGVERRHHLAEQGLQRAVSLAARRAGIDKPCSPHV 286 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 LRHSFATH+L G D+R++Q +LGH + TT IYT+V ++ G Sbjct: 287 LRHSFATHMLQAGYDIRTVQELLGHADVKTTMIYTHVLNRGG 328 >gi|254994002|ref|ZP_05276192.1| integrase/recombinase [Listeria monocytogenes FSL J2-064] Length = 128 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/133 (34%), Positives = 65/133 (48%), Gaps = 12/133 (9%) Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPLNPGVFQRY 246 GKG+K R VP AI +Y P NL + L G PL + Sbjct: 1 GKGNKERYVPFGVYAEDAITDY---LPERANLMSRYKKSHDALLVNHYGDPLTTRGIRYC 57 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 + ++ L H LRH+FAT LL+NG D+R++Q +LGH LS+TQIYT+V ++ Sbjct: 58 LSKIISKASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEH- 116 Query: 307 GDWMMEIYDQTHP 319 + Y + HP Sbjct: 117 ---LKATYMKHHP 126 >gi|196230879|ref|ZP_03129740.1| integron integrase [Chthoniobacter flavus Ellin428] gi|196225220|gb|EDY19729.1| integron integrase [Chthoniobacter flavus Ellin428] Length = 353 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 37/182 (20%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVP----------------- 201 LLYG GLR+ E + L +++ + L +Q G ++ ++P Sbjct: 163 LLYGAGLRMIECVRLRVKDVDFARGVLTLQETKGGQGRVTMLPETAREGLKRQLAKARAL 222 Query: 202 ------------LLP-----SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 +LP +R A ++ F + + P +R ++ Q Sbjct: 223 HEADRAAGANGVILPHALGEKLRHAATAWHWFWVFPSPVESRDPRSDVVRRHHVHEDSLQ 282 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 R ++ G+ T H LRHSFATHLL G D+R++Q +LGH ++TT IYT+V ++ Sbjct: 283 RALKAAASRAGIAKPVTPHVLRHSFATHLLEKGQDIRTVQELLGHKDVATTMIYTHVLNR 342 Query: 305 NG 306 G Sbjct: 343 PG 344 >gi|239502669|ref|ZP_04661979.1| integrase [Acinetobacter baumannii AB900] Length = 194 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 16/184 (8%) Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 + R K D++ + + +T RN +LY + GLR E L ++ D Sbjct: 1 MARTTTGKAPYVSEDDLEITLATQTGVNALRNKCVLYFSHFLGLRAKELSMLKVGDVYDV 60 Query: 185 Q-----STLRIQG---KGDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIR 234 + +R+ G KG++ R V L+ + ++++E Y P D + PLF + Sbjct: 61 KKGKLKDIIRLLGNITKGNRYREVFLVNPIARSLVEEYITKERPKDPDA----PLFLSQK 116 Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 G P +P I + G+ T+H+ R SFAT L+ GGD+ SIQ ++GH + T Sbjct: 117 GGPFSPNSMVTMINNCYKKAGI--QATSHSGRRSFATRLIRKGGDIYSIQQLMGHSSILT 174 Query: 295 TQIY 298 TQ Y Sbjct: 175 TQKY 178 >gi|303241940|ref|ZP_07328433.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302590495|gb|EFL60250.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 283 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 80/299 (26%), Positives = 132/299 (44%), Gaps = 24/299 (8%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 ++E N+L+N S T++ Y D R + + + TI IRQ + E +++ Sbjct: 3 IEEFANFLKN----ENKSTNTIKGYIADIRDYNKWFHETFSKDFTI-IIRQ-NILEYKSY 56 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS--NSLPRALNEK 132 + + ++ +++ LS + + YL + I E I N +K + P + E Sbjct: 57 L--QNIKRNNAKTINHKLSSLLKYNHYLVYKNIQKEIAIENNDKIKIQLQYASPTKVTET 114 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQ 191 + + ++L E+K + RN A++ L GLRISEAL++ + +D + + Sbjct: 115 EVKQFLQSIL-----ESK--NLRNYALMVFLAYTGLRISEALNIKMDDFDLDGKECIIRT 167 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 GKGDK R V L V A+ EY + N LF + K L+ R ++ Sbjct: 168 GKGDKQRSVMLNSKVITAVKEYLKVRSNISTANGSNYLFVSRKNKKLDRTTVNRIFKKYS 227 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 S T H LRH F T+ L G + + GH + TT +YTN + K D M Sbjct: 228 N------SITPHQLRHFFCTNALEKGMLAHEVANQAGHSNIHTTLLYTNPDKKKLIDKM 280 >gi|172041119|ref|YP_001800833.1| putative phage integrase [Corynebacterium urealyticum DSM 7109] gi|171852423|emb|CAQ05399.1| putative phage integrase [Corynebacterium urealyticum DSM 7109] Length = 265 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 69/155 (44%), Gaps = 30/155 (19%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213 AR ++ L+ GLR E L +++ D TLR+ GKG R VPL P + I Sbjct: 118 ARTQLMIELMAYGGLRRGEVCKLRTCDLVGD--TLRVVGKGGHERFVPLPPHLSGQI--- 172 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTAHTLRH 267 RG+ L PG ++ Y+G LP T H LRH Sbjct: 173 -----------------RGMTAGYLFPGRIDGHLSAA--YVGKLIGRALPAGVTPHQLRH 213 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 FAT G D+ ++QS+LGH +L TT IY ++ Sbjct: 214 RFATVAYRKGRDIVAVQSLLGHAKLDTTMIYVALD 248 >gi|157265299|ref|YP_001467858.1| XerD-like integrase [Thermus phage P23-45] gi|156905194|gb|ABU96838.1| XerD-like integrase [Thermus phage P23-45] Length = 327 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 69/144 (47%), Gaps = 6/144 (4%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 RN++IL L G GLR +E L +I+ D+ +R+ GK +VP V + L Y Sbjct: 166 RNASILALALGSGLRAAEICRLQVADILWDEMAVRVHGKTGH-GVVP----VTRETLRYL 220 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 L D P R +PL V +I++ + G+ H LRH+FAT+ L Sbjct: 221 RLY-LDRERKATSPYLFVHRNRPLTSEVLSHWIKRQAKVAGINKKVGMHLLRHTFATNYL 279 Query: 275 SNGGDLRSIQSILGHFRLSTTQIY 298 +GGD ++Q IL H + T Y Sbjct: 280 KSGGDPFTLQRILRHKSPAMTSRY 303 >gi|108802537|ref|YP_642733.1| phage integrase [Mycobacterium sp. MCS] gi|108772956|gb|ABG11677.1| phage integrase [Mycobacterium sp. MCS] Length = 344 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 74/322 (22%), Positives = 126/322 (39%), Gaps = 72/322 (22%) Query: 26 EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR------ 79 +IER S T+++Y D + + FLA + +Q ++ AF+S R Sbjct: 13 DIER--SPNTIKAYAHDLKDWFTFLAGRGPDWTAVQ------LEDVGAFVSWLRLPMALR 64 Query: 80 ----------TQKIGDRSLKRSLSGIKSFLKYLKKRKITTE------------------- 110 G+ ++ R LS + +F Y + + Sbjct: 65 QSGIVMLPTMEHHCGEATVNRKLSALAAFYTYAARDGVAVGELLTTWQVGGSRGGWKPFL 124 Query: 111 ---SNIL----NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLL 163 SN + M LK + LPR L +A ++D+ R+ +L +L Sbjct: 125 HHVSNRMPRSRRMVTLKTAKKLPRILTPVEAQAVLDSC----------DRLRDRFLLAVL 174 Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQ---------GKGDKIRIVPLLPSVRKAILEYY 214 Y G+R+ EAL L +I + + I+ K R VP+ P + + +Y Sbjct: 175 YDTGMRVGEALGLRHSDIAAAECEITIRRRDNDNGARAKSVSSRTVPVSPELIRLYADYL 234 Query: 215 DLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 DL+ + + + L+ G P +R+LRR G+ H LRH+ AT + Sbjct: 235 HDEYGDLDSDYVFVNLWGRPHGHPWTYAAVYDLVRRLRRRTGIDFD--PHWLRHTAATRM 292 Query: 274 LSNGGDLRSIQSILGHFRLSTT 295 L +G L + +LGH ++TT Sbjct: 293 LRDGIGLEVVAKLLGHANVTTT 314 >gi|77918979|ref|YP_356794.1| site-specific recombinase XerD [Pelobacter carbinolicus DSM 2380] gi|77545062|gb|ABA88624.1| site-specific recombinase XerD [Pelobacter carbinolicus DSM 2380] Length = 333 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 45/185 (24%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEY------- 213 LLYG GLR+ E + L Q + +++ + ++ GKG K R S+++A+ ++ Sbjct: 139 LLYGGGLRLMECIRLRIQGLDFERNLIYLRDGKGGKDRTTIFPASMKRALQKHVEKVKQL 198 Query: 214 ---------------------YDLCPFDLNLNIQLPLFRGIRGKPLNP------------ 240 Y P + P RG+ +P Sbjct: 199 HEQDLADGYGTVFLPHALAKKYPKAPQEFGWQYLFP----ARGRSTDPRSGKIRRHHVLE 254 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 Q+ ++ G+ HT RHSFATHLL NG ++R +Q ++GH + TT+IYT+ Sbjct: 255 SGLQKAVKVAVNRAGIHKRVGCHTFRHSFATHLLENGVNIRVVQELMGHADVKTTEIYTH 314 Query: 301 VNSKN 305 V +K+ Sbjct: 315 VMAKD 319 >gi|57167914|ref|ZP_00367054.1| DNA recombinase Cj0863c [Campylobacter coli RM2228] gi|57021036|gb|EAL57700.1| DNA recombinase Cj0863c [Campylobacter coli RM2228] Length = 354 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 96/187 (51%), Gaps = 12/187 (6%) Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 K LP +NE + ++ + + + K RN I+ ++ G+R+SEA+++ ++ Sbjct: 160 KGAKLPEFMNEDELKKFLEAI---ENSDFKNNTIRNKLIIKIIIFTGIRVSEAINIKLKD 216 Query: 181 IMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGKP 237 I ++ +RI+ KG+K R+V ++K ++E+ L +N L+ LF GK Sbjct: 217 ISEENELYIIRIRAKGNKYRVVM----IKKELIEHL-LKDVRVNYLSEDGLLFVNRNGKA 271 Query: 238 LNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 L R + Q+ G+ AH LRH+FAT L DL +Q LGH L+T++ Sbjct: 272 LTQAYVSRIVEQILFRAGIRKQKNGAHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSR 331 Query: 297 IYTNVNS 303 IYT+ ++ Sbjct: 332 IYTHFDN 338 >gi|331090315|ref|ZP_08339199.1| hypothetical protein HMPREF1025_02782 [Lachnospiraceae bacterium 3_1_46FAA] gi|330401450|gb|EGG81035.1| hypothetical protein HMPREF1025_02782 [Lachnospiraceae bacterium 3_1_46FAA] Length = 322 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 61/249 (24%), Positives = 110/249 (44%), Gaps = 21/249 (8%) Query: 61 QTIRQLSYTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119 Q++R+++ EIR ++S ++ + + ++ I SF +L++ +S + + + Sbjct: 81 QSVRRITTEEIRTYLSDYQKINRCSNVTIDNIRRNISSFFSWLEEEDYILKSPMKRIHKI 140 Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 K + + ++ L DN + R+ AI+ LLY G+R+ E ++L + Sbjct: 141 KTKTVVKSVITDEGIEKLRDNCA----------EIRDLAIIDLLYSTGIRVGELVNLNIE 190 Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD---LNLNIQLPLFRGIRGK 236 +I + + GKGDK R V + + EY + + L + + P R Sbjct: 191 DIDLEGRECIVYGKGDKERRVYFDAKAKVHLKEYIEKRKDNSEALFVTLDAPHDR----- 245 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 L + +RQL R L L H R + AT + G + +Q ILGH ++ TT Sbjct: 246 -LKISGVEIRLRQLGRQLKLD-RIHPHKFRRTMATRAIDKGMPIEQVQKILGHSQIDTTM 303 Query: 297 IYTNVNSKN 305 Y VN N Sbjct: 304 QYAMVNQNN 312 >gi|157265417|ref|YP_001467975.1| phage XerD-like integrase [Thermus phage P74-26] gi|156905312|gb|ABU96955.1| phage XerD-like integrase [Thermus phage P74-26] Length = 327 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 69/144 (47%), Gaps = 6/144 (4%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 RN++IL L G GLR +E L +I+ D+ +R+ GK +VP V + L Y Sbjct: 166 RNASILALALGSGLRAAEICRLQVADILWDEMAVRVHGKTGH-GVVP----VTRETLRYL 220 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 L D P R +PL V +I++ + G+ H LRH+FAT+ L Sbjct: 221 RLY-LDRERKATSPYLFVHRNRPLTSEVLSHWIKRQAKVAGINKKVGMHLLRHTFATNYL 279 Query: 275 SNGGDLRSIQSILGHFRLSTTQIY 298 +GGD ++Q IL H + T Y Sbjct: 280 KSGGDPFTLQRILRHKSPAMTSRY 303 >gi|312887689|ref|ZP_07747278.1| integrase family protein [Mucilaginibacter paludis DSM 18603] gi|311299784|gb|EFQ76864.1| integrase family protein [Mucilaginibacter paludis DSM 18603] Length = 420 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 86/292 (29%), Positives = 130/292 (44%), Gaps = 30/292 (10%) Query: 31 LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90 L+K T+++Y L FL +K I QLSY I F RT K D Sbjct: 125 LAKGTMKNYYTTQDYILQFLK--KSKKPAGWDITQLSYKFIADFELFLRTFKKKDDPQPL 182 Query: 91 SLSGIKSFLKYLKKR---KITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 + +G+ L+ KK +T E +++ K S R ++ L +V+ L T Sbjct: 183 NNNGVMKHLERFKKMINMAVTIEWLDKDPFVKHKLKFTSKERGYLTEEELAVVETKELKT 242 Query: 146 SHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIM---DDQSTLRIQ-GKGDKIRI 199 K I R+ L+GC GL +A++LT N+M D + L Q K K Sbjct: 243 D---KLIYVRD----LFLFGCYTGLSYIDAINLTANNLMIGIDKEHWLLTQRQKSSKPVK 295 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 +PLLP + I + D +FR I + LN Y++ L R G+ + Sbjct: 296 LPLLPLAAQIIARHR----HDPRAISNGTIFRPISNQKLND-----YLKDLARECGIDKN 346 Query: 260 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 + H RH+FAT + L+NG + ++ +LGH ++STTQIY V + D M Sbjct: 347 FSFHLARHTFATTVTLANGVPIETVSKMLGHTKISTTQIYAKVVERKVSDDM 398 >gi|212640261|ref|YP_002316781.1| Site-specific recombinase XerC [Anoxybacillus flavithermus WK1] gi|212561741|gb|ACJ34796.1| Site-specific recombinase XerC [Anoxybacillus flavithermus WK1] Length = 307 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 73/306 (23%), Positives = 141/306 (46%), Gaps = 39/306 (12%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 ++L E + +LQ E+G S T+ SY D QFL L + +T IR+ I+ Sbjct: 3 KMLHEYETYLQ----EKGFSPNTVISYLNDVNQFLKDLHLRPGDYVTSADIRKW----IQ 54 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 ++ + + ++ R L+ ++SF + + ++ + ++++LK ++ + + Sbjct: 55 QMLNPSEGKPLAISTINRRLNSLRSFYAWAVEHHKIEQNPMKDIQDLKSADE-----DNE 109 Query: 133 QALTLVDNV---LLHTSH----ETKWIDA-----RNSAILYLLYGCGLRISEALSLTPQN 180 + + L + LLH +++ +D R+ A++YLL GLR+ E +L + Sbjct: 110 KIMWLTEEEFEDLLHRMRKKPVQSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTD 169 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-- 238 + + +RI GKG K+R VP + ++ A LE D F + + P + P Sbjct: 170 LDLEMKRIRIVGKGMKVRTVP-ISNILLAELE--DWLKFRAEMAKKKP---HVAASPYVF 223 Query: 239 ----NPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRL 292 +P R I+++ LP T H RH+F +L + D+ ++ + GH + Sbjct: 224 YSQRSPKFSVRGIQRMIESYSLPNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNI 283 Query: 293 STTQIY 298 +TT Y Sbjct: 284 ATTSRY 289 >gi|330880014|gb|EGH14163.1| Orf28 [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 183 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 76/163 (46%), Gaps = 33/163 (20%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSVRKAILE 212 R+ AIL +L GLR EA L ++ + + LR+ GKG KIR +PL P + I Sbjct: 18 RDRAILAVLLYHGLRREEAAQLKTGDLQERRGIKHLRVHGKGSKIRFLPLHPVAAERIYA 77 Query: 213 YY------DLCPFDLNLNIQLPLFRGIRGKPLNPG--------VFQRYIRQ---LRRYLG 255 Y D P PLFR +RG G V + Y ++ + +LG Sbjct: 78 YLEQDVERDAAPG--------PLFRSLRGTTTGAGITANGIYTVVEAYAKKAGIVVEHLG 129 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + H LR + AT+ L + D+ +Q LGH +STT++Y Sbjct: 130 V------HGLRATAATNALEHDADIAKVQMWLGHANISTTRLY 166 >gi|94442276|dbj|BAE93637.1| integron integrase [uncultured bacterium] Length = 162 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 43/69 (62%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 IR L+ G Q+ +++ R G+ HTLRH FATHLL D+R++Q +LGH + Sbjct: 93 IRRHHLHEGTLQKSVKKAARGCGINKRVGCHTLRHCFATHLLEANHDIRTVQELLGHAHV 152 Query: 293 STTQIYTNV 301 STT IYT+V Sbjct: 153 STTMIYTHV 161 >gi|320162129|ref|YP_004175354.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] gi|319995983|dbj|BAJ64754.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] Length = 103 Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 43/69 (62%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 +R L+P QR ++ + +G+ + HT RH FATHLL G D+R++Q +LGH + Sbjct: 21 VRRHHLDPSGLQRAVKAAAKLVGIDKPVSPHTFRHCFATHLLEAGYDIRTVQELLGHKDV 80 Query: 293 STTQIYTNV 301 TT IYT+V Sbjct: 81 KTTMIYTHV 89 >gi|30908730|gb|AAP37597.1| IntI [uncultured bacterium] Length = 161 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 8/101 (7%) Query: 209 AILEYYDLCPFDLNLNIQLPLFR--------GIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 AI Y P++ P + +R + R +++ R G+ Sbjct: 61 AIARKYPRAPYEWGWKFVFPSHKLSVDPKTGAVRRHHVYENFVIRGVKEAARAAGIAKHV 120 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + HTLRHSFATHLL G D+R++Q +LGH +STT IYT+V Sbjct: 121 SCHTLRHSFATHLLEGGYDIRTVQELLGHSDVSTTMIYTHV 161 >gi|89147490|gb|ABD62605.1| integrase [uncultured bacterium] Length = 163 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/62 (51%), Positives = 41/62 (66%) Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 P +QR I+ + T+HTLRHSFATHLL +G DLR+IQ +LGH + TT IYT Sbjct: 101 PDSYQRSIKLASTAADITKRVTSHTLRHSFATHLLESGTDLRTIQELLGHSDIKTTMIYT 160 Query: 300 NV 301 +V Sbjct: 161 HV 162 >gi|295402694|ref|ZP_06812637.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93] gi|294975266|gb|EFG50901.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93] Length = 284 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 78/150 (52%), Gaps = 7/150 (4%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQ--NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210 + RN A++ LL GLRISEALSL N++ + +R GKG+K R+V + V KA Sbjct: 127 NKRNYALVTLLAYAGLRISEALSLKMNDFNLVSREIIVR-SGKGNKFRVVFMNDKV-KAA 184 Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 L+ + + + + LF R K L+ + ++ ++G + T H LRH F Sbjct: 185 LQSWLKERKEKGIESEY-LFVSNRNKRLDRTTVNKLFKEYSEHIGKEI--TPHDLRHFFC 241 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 +H +S G + + + GH + TT +YTN Sbjct: 242 SHAISRGLSVHEVANQAGHSNIHTTLLYTN 271 >gi|153815634|ref|ZP_01968302.1| hypothetical protein RUMTOR_01870 [Ruminococcus torques ATCC 27756] gi|317502423|ref|ZP_07960587.1| phage integrase family Site-specific recombinase [Lachnospiraceae bacterium 8_1_57FAA] gi|145847065|gb|EDK23983.1| hypothetical protein RUMTOR_01870 [Ruminococcus torques ATCC 27756] gi|316896161|gb|EFV18268.1| phage integrase family Site-specific recombinase [Lachnospiraceae bacterium 8_1_57FAA] Length = 322 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 61/249 (24%), Positives = 110/249 (44%), Gaps = 21/249 (8%) Query: 61 QTIRQLSYTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119 Q++R+++ EIR ++S ++ + + ++ I SF +L++ +S + + + Sbjct: 81 QSVRRITTEEIRTYLSDYQKINRCSNVTIDNIRRNISSFFSWLEEEDYILKSPMKRIHKI 140 Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 K + + ++ L DN + R+ AI+ LLY G+R+ E ++L + Sbjct: 141 KTKTVVKSVITDEGIEKLRDNCA----------EIRDLAIIDLLYSTGIRVGELVNLNIE 190 Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD---LNLNIQLPLFRGIRGK 236 +I + + GKGDK R V + + EY + + L + + P R Sbjct: 191 DIDLEGRECIVYGKGDKERRVYFDAKAKVHLKEYIEKRKDNNEALFVTLDAPHDR----- 245 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 L + +RQL R L L H R + AT + G + +Q ILGH ++ TT Sbjct: 246 -LKISGVEIRLRQLGRQLKLD-RIHPHKFRRTMATRAIDKGMPIEQVQKILGHSQIDTTM 303 Query: 297 IYTNVNSKN 305 Y VN N Sbjct: 304 QYAMVNQNN 312 >gi|223369836|gb|ACM88787.1| integrase [uncultured bacterium] Length = 163 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 41/60 (68%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 QR ++Q R G+ + HTLRHSFATHLL +G D+R++Q +LGH + TT IYT+V Sbjct: 103 ALQRAVKQALRKAGIVKPGSVHTLRHSFATHLLESGYDIRTVQELLGHADVKTTMIYTHV 162 >gi|65317106|ref|ZP_00390065.1| COG0582: Integrase [Bacillus anthracis str. A2012] Length = 272 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 56/212 (26%), Positives = 101/212 (47%), Gaps = 13/212 (6%) Query: 92 LSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150 + ++SF KYL + + NI+N ++ LK+ + + + + +++ T Sbjct: 46 IKSLRSFYKYLVVEEYVS-VNIMNKIKLLKEDVEVIKTFTDDEVAKMIEAYDFKT----- 99 Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210 +++ARN I+ + G+R+SE ++L I D ++LRI+GKG K R VP+ ++K + Sbjct: 100 YLNARNKVIIAMFVDTGMRMSELINLQSSWIYD--TSLRIKGKGSKWRHVPMSLMLKKYM 157 Query: 211 LEYYDLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIR--QLRRYLGLPLSTTAHTLR 266 + Y + F+ F GKP+ + ++ LR + + + HT+R Sbjct: 158 IRYERIKAKYFEKKALEHDNYFLSRAGKPICTVQIENIVKIAGLRAGVREDIRCSPHTVR 217 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 H L NG DL S I GH + T+ Y Sbjct: 218 HYAIQSNLRNGLDLYSCSKIAGHENIQVTKRY 249 >gi|312135654|ref|YP_004002992.1| integrase family protein [Caldicellulosiruptor owensensis OL] gi|311775705|gb|ADQ05192.1| integrase family protein [Caldicellulosiruptor owensensis OL] Length = 310 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 73/290 (25%), Positives = 124/290 (42%), Gaps = 46/290 (15%) Query: 30 GLSKLTLQSYECDTRQFLIFL--AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87 G S+LTL+ YE F F+ E+++ + LS Q + + Sbjct: 26 GRSELTLRDYEYHITHFFKLYPNCFHDEQQLKKCLLEYLS-------------QPVKPAT 72 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV------ 141 L+ +K+F K+ E NIL KSN L L +K+A + N+ Sbjct: 73 YNLRLTYLKAFFKW------CVEENIL------KSNPL-EGLPKKKAEGRIVNIDTEILE 119 Query: 142 -LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI--- 197 LL + + R+ A++ L G+R EA SL ++ D TL++ D Sbjct: 120 KLLKLPDKNTFCGLRDYALILLTLDTGIRPKEAFSLLIEHF--DFKTLQVFIPSDAAKTR 177 Query: 198 --RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 R++P+LP A+ + + + ++P+F + G+PL ++ + + LG Sbjct: 178 VSRVLPILPVTANAVKKL--IAVRHPEWDDKVPVFCTVTGRPLTRDIWHDRMEMYSKKLG 235 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + + + LRH+FA L NGG S+Q LGH L T+ Y + + Sbjct: 236 VKIR--PYDLRHTFALLYLKNGGYELSLQKTLGHTTLEMTKRYVHFTQND 283 >gi|330900242|gb|EGH31661.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 299 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 77/290 (26%), Positives = 121/290 (41%), Gaps = 37/290 (12%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W N+ R T ++Y+ D R F F+ E+ R ++ + A+ ++ Sbjct: 32 WFANIRNPR-----TRRAYQADLRDFCSFVGLAGAEEF-----RAVNRAHVLAWRAQLER 81 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLVD 139 + + +++R L+ + S YL +N L N + P+ NE + L D Sbjct: 82 RALSGATIRRKLAALASLFDYL------LNNNALAGGNPVHGVARPKVETNEGKTPALGD 135 Query: 140 NV---LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194 + LL R+ AIL +L GLR E L ++ + + LRI GKG Sbjct: 136 DQAKRLLDAPDAESLQGVRDRAILAVLLYQGLRREELSLLQTGDLQERRGVKHLRIHGKG 195 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR--- 251 KIR +PL P + I Y + D L LFR RGK G+ + + + Sbjct: 196 GKIRYLPLHPVAAERIYVYL-VRDGDRALTPG-ALFRSQRGKTSGTGITGKGVYGVVTKW 253 Query: 252 ------RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 R GL + H LR + AT+ L + D+ +Q LGH +STT Sbjct: 254 ASAAQIRVDGLGV----HGLRATAATNALEHDADIAKVQIWLGHANISTT 299 >gi|149182724|ref|ZP_01861190.1| integrase-recombinase protein [Bacillus sp. SG-1] gi|148849584|gb|EDL63768.1| integrase-recombinase protein [Bacillus sp. SG-1] Length = 279 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 64/284 (22%), Positives = 122/284 (42%), Gaps = 45/284 (15%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL+N G S T+++YE R+ + + ++ +++ +++S +++ +I Sbjct: 15 WLEN----EGKSANTVRTYE---RELTKYQDWLQQKGLSL---KEVSQEDVQQYIRFLEG 64 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q + + L I++F K++K+ +ITT + M+ K + LN Q TL+ Sbjct: 65 QGRSPVTTDKILGAIRTFSKFIKRPEITTG---IEMKTTDKRTEI-ECLNGSQCATLLKK 120 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 V + + RN+AI+Y L G+R+SE +L +I D+ L ++ R + Sbjct: 121 V-------KEEGNDRNTAIVYTLLHTGIRVSELCALNQSDIDLDKGRLEVRTSTGHPRTI 173 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF-----QRYIRQLRRYLG 255 PL + YY C + P+ VF +R + +Y+ Sbjct: 174 PLSVEAK-----YYLECHLATS--------------PVKDAVFVSRANERLTERAIQYIL 214 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 H LRH+F L+ G + + + GH ++ T+ Y Sbjct: 215 KKFDVNPHKLRHTFCQQLVDKGVSIEIVSRLAGHKDINVTKRYA 258 >gi|114762274|ref|ZP_01441732.1| integrase/recombinase [Pelagibaca bermudensis HTCC2601] gi|114767558|ref|ZP_01446311.1| integrase/recombinase [Pelagibaca bermudensis HTCC2601] gi|114540387|gb|EAU43474.1| integrase/recombinase [Roseovarius sp. HTCC2601] gi|114544892|gb|EAU47896.1| integrase/recombinase [Roseovarius sp. HTCC2601] Length = 184 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/154 (35%), Positives = 71/154 (46%), Gaps = 17/154 (11%) Query: 159 ILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLP---SVRKAILEYY 214 +L LLY G RI EAL L P I + +R+ GKG K RI PL P ++ K +LE Sbjct: 2 LLSLLYNSGARIQEALDLCPGAIRFEAPYYVRLYGKGRKERICPLWPETVALMKKLLERQ 61 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNP-GV-FQRYIRQLRRYLGLPL----STTAHTLRHS 268 P + +F G+PL GV F+ P T H+ RH+ Sbjct: 62 PRAPDER-------IFVNRYGEPLGASGVRFKLAAYVAAAAKTTPSLRLKHVTPHSFRHA 114 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 A HL++ G D+ I+S LGH L TT Y N Sbjct: 115 TAVHLVAAGVDITVIRSWLGHVSLDTTNHYAQAN 148 >gi|89147570|gb|ABD62644.1| integrase [uncultured bacterium] Length = 163 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 29/50 (58%), Positives = 37/50 (74%) Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 R G+ + HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 113 REAGITKPASCHTLRHSFATHLLENGSDIRTVQELLGHKDVSTTMIYTHV 162 >gi|331269369|ref|YP_004395861.1| phage integrase family site specific recombinase [Clostridium botulinum BKT015925] gi|329125919|gb|AEB75864.1| phage integrase family site specific recombinase [Clostridium botulinum BKT015925] Length = 357 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 80/315 (25%), Positives = 132/315 (41%), Gaps = 46/315 (14%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE------KITIQTIRQL 66 ++LKE +N +N+ + L K+T T +L + Y E K + L Sbjct: 47 KMLKELKNTTKNVPVNNDLIKVTFNQL---TTIYLDHITLYKEYHTVKSYKNCFSKFKDL 103 Query: 67 SYTEIRAFISKRRTQKIGDRSLKRSL--SGIKSFLKYLKKRKITTESNILNMRNLKKSN- 123 + I+ I K Q I D+ LK L S +K ++ L I + ++ + L N Sbjct: 104 NNKRIKE-IKKHDIQSIVDKLLKEHLKYSTVKKYVGILNMFFIYVKDDLNLIFELPTVNI 162 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 +P+ + L L E + D + + ++ G+R+ E L LT +I Sbjct: 163 KIPKEKEYSNKIALTKKQLNKLLKELQ--DNKYYMVAFIAANTGMRLGEVLGLTWDSIDF 220 Query: 184 DQSTL-----------RIQGKG-----DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227 +S++ R G G + R +PL P+ K + Y P D+N Sbjct: 221 KRSSITVNKQWKVLKTRKSGFGSLKSKNSYRTIPLSPNTLKELKNYKKNNPTDINN---- 276 Query: 228 PLFRGIRGKPLNPGVFQRYIR-QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286 R P N +Y+ +L+ G+ T H LRH++AT L+SNG D ++ I Sbjct: 277 ------RVTPFNASSIDKYLNPKLKELAGI----TMHELRHTYATALISNGVDFKTAAKI 326 Query: 287 LGHFRLSTTQIYTNV 301 LGH T +IY++V Sbjct: 327 LGHTVEMTMKIYSHV 341 >gi|257076019|ref|ZP_05570380.1| phage integrase family protein [Ferroplasma acidarmanus fer1] Length = 329 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 64/245 (26%), Positives = 116/245 (47%), Gaps = 17/245 (6%) Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 EI +++ R + +S++ +S + + KY+ K I+ + ++ LKK + Sbjct: 45 EIYSYVEMRLRSGLKKKSVRLEISDLSHWCKYIGK-PISKD----DLPVLKKEPDPDPFI 99 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-DQSTL 188 E + + + + + W ARN ++ +L G+R E L N+ D STL Sbjct: 100 PEPEDIQRMREFCISRKDKYTW--ARNLCMMDMLIATGMRAGE---LIHANLEDYKNSTL 154 Query: 189 RIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 I+ KG+K R VPL + + EY + + + LF G+ N ++ I Sbjct: 155 YIRSEKGEKDRTVPLPGKLTSEVDEYIEKYRYHSD---SRALFTTRTGR-YNYNKLRQLI 210 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 + + + G+P H+ RH +AT L+ G D+R +Q ++GH R+ TT YT++ K G Sbjct: 211 KYIGVHSGVP-DIHPHSFRHYYATTLVRLGVDIRRVQILVGHARIETTTRYTHLTQKEVG 269 Query: 308 DWMME 312 + + E Sbjct: 270 EAVKE 274 >gi|89147541|gb|ABD62630.1| integrase [uncultured bacterium] Length = 163 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 29/50 (58%), Positives = 37/50 (74%) Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 R G+ + HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 113 REAGITKPASCHTLRHSFATHLLENGSDIRTVQELLGHKDVSTTMIYTHV 162 >gi|83816861|ref|YP_446969.1| phage integrase family site specific recombinase [Salinibacter ruber DSM 13855] gi|83758255|gb|ABC46367.1| site-specific recombinase, phage integrase family, truncation [Salinibacter ruber DSM 13855] Length = 191 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 94/191 (49%), Gaps = 20/191 (10%) Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178 + + + LPR L E++ + LL ++ + R+ + ++ GLR SEA +L P Sbjct: 1 MARPDKLPRVLTEEET-----DRLLSEPNQRYFGPHRDYLYMRVMLKAGLRASEATALRP 55 Query: 179 QNI--MDDQSTLRIQGKGDKIRIV----PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232 + I M + +R +GKG K R + LL ++ + + P + LP +G Sbjct: 56 ERIDLMSGKLMVR-EGKGAKDRTLWIGEELLEELQGWMDRRQEKAP---KADYLLPTSKG 111 Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPL--STTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290 + + +R +++ R G+ + HTLRH+FAT L + G +R +Q LGH Sbjct: 112 TQ---VATSHLRRSVKRYARDAGIEEVERVSPHTLRHTFATRLYRSAGKIRLVQKALGHS 168 Query: 291 RLSTTQIYTNV 301 LSTT IYT+V Sbjct: 169 DLSTTMIYTHV 179 >gi|223369838|gb|ACM88788.1| integrase [uncultured bacterium] Length = 163 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 41/60 (68%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 QR ++Q R G+ + HTLRHSFATHLL +G D+R++Q +LGH + TT IYT+V Sbjct: 103 ALQRAVKQALRKAGIVKPGSVHTLRHSFATHLLESGYDIRTVQELLGHADVKTTMIYTHV 162 >gi|223369812|gb|ACM88775.1| integrase [uncultured bacterium] Length = 163 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 41/60 (68%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 QR ++Q R G+ + HTLRHSFATHLL +G D+R++Q +LGH + TT IYT+V Sbjct: 103 ALQRAVKQALRKAGIVKPGSVHTLRHSFATHLLESGYDIRTVQELLGHADVKTTMIYTHV 162 >gi|89147673|gb|ABD62695.1| integrase [uncultured bacterium] Length = 166 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/63 (49%), Positives = 43/63 (68%) Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 N Q+ +++ R G+ + HTLRHSFATHLL NG D+R++Q +LGH +STT IY Sbjct: 103 NETWLQQEVKRAVRASGINKLASCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIY 162 Query: 299 TNV 301 T+V Sbjct: 163 THV 165 >gi|296104775|ref|YP_003614921.1| phage integrase family site-specific recombinase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059234|gb|ADF63972.1| phage integrase family site-specific recombinase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 361 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 62/224 (27%), Positives = 99/224 (44%), Gaps = 29/224 (12%) Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL-NMRNLKKSNSLPRALNEKQALTL 137 R + + R++ L+ ++ LK+ T N L N+R K + L ++A Sbjct: 123 RVKTVTPRTVNLELAYFRAMFNELKRLDDWTAPNPLENVREFKIAEVELAWLTVEEA--- 179 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 LL ++K D +AI+ + G R EA SLT + I + T I+ KG K Sbjct: 180 --TRLLEECEKSKADDL--TAIVKICLATGARWGEAESLTGKQISPGKITF-IKTKGKKN 234 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGL 256 R VP+ E Y+L P + KPL G + + ++R + L Sbjct: 235 RAVPISE-------ELYELLP------------KSRTSKPLFTGCYSAFRSAIKRAGIEL 275 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 P +H LRH+FA+H + GG++ +Q ILGH + T Y + Sbjct: 276 PDGQLSHVLRHTFASHFMMGGGNILVLQRILGHTDIKVTMRYAH 319 >gi|154795716|gb|ABS86842.1| integrase/recombinase [Helicobacter cetorum] Length = 355 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 75/279 (26%), Positives = 130/279 (46%), Gaps = 35/279 (12%) Query: 48 IFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKR 105 +FL F Y + + +++ R LS ++ F+ Q S+ + + ++ F YL +K+ Sbjct: 77 LFLFFDYFKNNLKLRSFRMLSEEQVINFLF-NLAQNRKPSSMAKYVMYLRQFFDYLDRKK 135 Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH---TSHETKWIDARNSAILYL 162 + + + + N+ K SLPR LN+K + + +L + TSHE RN +L + Sbjct: 136 RYSFDFMLKNLAFAKTKESLPRHLNDKDLKSFLKTLLEYKPTTSHE-----KRNKCVLLI 190 Query: 163 LYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDK-----IRIVPLLPSVRKAILEYYD 215 + GLR E L++ ++I ++ ++ IQGKG K I+ L PS+ + + Y Sbjct: 191 VILGGLRKCEVLNIELKHIQVEEQNYSILIQGKGRKERKAYIKKSLLEPSLNAWLSDDYR 250 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLN--------PGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 L F+ LF+ + K N P +F+ + Q++ Y T H RH Sbjct: 251 LKYFN-----GAYLFKKDKQKAQNSLTLYNFIPLIFK--LAQIKHYK--QYGTGLHLFRH 301 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 SFAT + DL LGH L +T+IY + ++ Sbjct: 302 SFATLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHN 340 >gi|327440384|dbj|BAK16749.1| integrase [Solibacillus silvestris StLB046] Length = 157 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 74/156 (47%), Gaps = 9/156 (5%) Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 +A+ +Y G RI E + L +I +++ +QGKGDK R V + Y D Sbjct: 3 NALFEFMYSTGCRIGEVVKLDRHDIDFRTNSVIVQGKGDKEREVYFNTRCSIWLKRYLDE 62 Query: 217 CPFDLNLNIQLPLFRGIRGKP---LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 D P KP ++ + I+++ G+ H LRHS+ATH+ Sbjct: 63 REDDD------PCLFITDRKPKRRMSIDNLRYIIKRVSNRAGIKKCIHPHQLRHSYATHM 116 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 ++NG + IQS+LGH + TT+IY ++ K D+ Sbjct: 117 INNGAPIDVIQSLLGHEKSETTKIYAQLSGKLRQDY 152 >gi|291528623|emb|CBK94209.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] Length = 282 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 67/282 (23%), Positives = 127/282 (45%), Gaps = 37/282 (13%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 R L + ++ Y+ FL ++ + EE L+ ++R F+ ++ + +L Sbjct: 16 RNLKERSINCYKNYVSYFLNYMEKHPEE---------LTCQDVRDFLLAKKDDGLKATTL 66 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 S I+ F + N+L++ L ++PR + E + T+ L T Sbjct: 67 NLYNSAIRFFYR-----------NVLHV--LWDDITVPRMIIEHKLPTI-----LSTDEI 108 Query: 149 TKWIDARNS----AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + +DA + A+ +Y G+R+SE + L +I + ++ +++ +L Sbjct: 109 DRLLDATDDLKYKAMFATMYSSGMRVSEVIHLHYDDISRTNMQIHVRDTKNRMDRYTILS 168 Query: 205 SVRKAIL-EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 A+L EY+ F + G+ L ++ IR+ GL T H Sbjct: 169 ERNLALLTEYW----FQKGRPKGILFPNQFTGQYLTVSTLEQVIRRSASAAGLS-GVTPH 223 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 LRHSFATHL+ G + R+IQ++LGH +T++Y +V++K+ Sbjct: 224 CLRHSFATHLMEQGVEQRNIQALLGHRDPKSTEVYLHVSNKS 265 >gi|89147526|gb|ABD62623.1| integrase [uncultured bacterium] Length = 162 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/64 (48%), Positives = 40/64 (62%) Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 ++P R + R G+ T HT RHSFATHLL +G D+R +QS+LGH L TT I Sbjct: 98 IHPSSVDRVVYGAGRRAGIGKRVTCHTFRHSFATHLLESGYDIRQVQSLLGHASLKTTMI 157 Query: 298 YTNV 301 YT+V Sbjct: 158 YTHV 161 >gi|78045063|ref|YP_359695.1| phage integrase family site specific recombinase [Carboxydothermus hydrogenoformans Z-2901] gi|77997178|gb|ABB16077.1| site-specific recombinase, phage integrase family [Carboxydothermus hydrogenoformans Z-2901] Length = 320 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 59/256 (23%), Positives = 115/256 (44%), Gaps = 16/256 (6%) Query: 67 SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126 SYT +R + K T+K + + L+ +K+F + K + ++ K+ + Sbjct: 58 SYTSLRQSVLKYFTEKASPSTRNKRLAHLKAFFSWCAKEGYIPANPAEGIKRAKEDITNI 117 Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 R ++ ++ LL + + R+ ++ + G+R E L + ++ + Sbjct: 118 RHVSLEEV-----KKLLQQPDKKTYTGLRDYCLMLVQIDTGVRPGELLQVRGSDLSLESR 172 Query: 187 TLRIQGKGDKIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 +RI+ + K RI + + P + I + + P ++ PLF G LN + Sbjct: 173 EIRIRPEVAKTRIGRTLIITPFTAQQIARFLRIRPEHWGDDV--PLFASENGITLNENDW 230 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + +RQ + G+ T + LRH+FA L GGD S+Q ILGH L+ T+ Y ++ Sbjct: 231 AKRVRQYCKKAGV--KVTPYGLRHTFAIEFLKAGGDPFSLQRILGHTDLTMTRRYVRLSQ 288 Query: 304 KNGGDWMMEIYDQTHP 319 D + E++++ P Sbjct: 289 ----DDIKEVHEKASP 300 >gi|89147536|gb|ABD62628.1| integrase [uncultured bacterium] gi|89147547|gb|ABD62633.1| integrase [uncultured bacterium] gi|89147555|gb|ABD62637.1| integrase [uncultured bacterium] gi|89147594|gb|ABD62656.1| integrase [uncultured bacterium] gi|89147620|gb|ABD62669.1| integrase [uncultured bacterium] Length = 163 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 45/74 (60%) Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 P +R ++ V Q+ ++ R G+ + HT RHSFATHLL NG D+R++Q +L Sbjct: 89 PRSGAVRRHHVDEQVLQKAVKAAIRAAGINKPGSCHTFRHSFATHLLENGYDIRTVQELL 148 Query: 288 GHFRLSTTQIYTNV 301 GH + TT IYT+V Sbjct: 149 GHKDVKTTMIYTHV 162 >gi|77918157|ref|YP_355972.1| integrase [Pelobacter carbinolicus DSM 2380] gi|77544240|gb|ABA87802.1| integrase [Pelobacter carbinolicus DSM 2380] Length = 330 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 82/181 (45%), Gaps = 37/181 (20%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYD----L 216 LLYG GLR E + L Q++ ++ + ++ GKG K R S++ + + D L Sbjct: 139 LLYGGGLRWMECIRLRVQDLDFERDLIYVRDGKGGKDRTTTFPASIKNGLQTHVDRIGQL 198 Query: 217 CPFDLN-----------LNIQLP----------LFRG-----------IRGKPLNPGVFQ 244 DL L+I+ P +F IR + Q Sbjct: 199 HEQDLAKGYGSVYLPNALDIKYPNAEKEFAWQYVFPSKRLSTDPRSGKIRRHHVLESGLQ 258 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + ++ G+ HT RHSFATHLL NG ++R +Q ++GH + TT+IYT+V +K Sbjct: 259 KAVKVAVNRAGIHKRVGCHTFRHSFATHLLENGVNIRVVQELMGHADVKTTEIYTHVMAK 318 Query: 305 N 305 N Sbjct: 319 N 319 >gi|317487235|ref|ZP_07946033.1| phage integrase [Bilophila wadsworthia 3_1_6] gi|316921525|gb|EFV42813.1| phage integrase [Bilophila wadsworthia 3_1_6] Length = 352 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 84/333 (25%), Positives = 140/333 (42%), Gaps = 51/333 (15%) Query: 6 LPEIVSFELLKERQNW--LQNLEI----ERGLSKLTLQSYEC-------DTRQFLIFL-A 51 LPE++S L +W L I +R L + +Y D R L+FL A Sbjct: 4 LPEVISNGELPVLDDWEPLSRKRILRYFDRSLEYADVSAYVSAQGELLPDERIILVFLNA 63 Query: 52 FYTEEKITIQ-----TIRQLSYT----------EIRAFISKRRTQKIGDRSLKRSLSGIK 96 YT+ T++ + L+Y ++ ++I + R + + RS+ + +K Sbjct: 64 VYTQSLATVELYCRYVVELLNYARKPSFSVTARDVESYIRQCRMKGLKPRSVNTIIGALK 123 Query: 97 SFLKYLKKRKITT--ESNILNMRNLKKSNSLP----RALNEKQALTLVDNVLLHTSHETK 150 S+ K L + + R SLP +L+E + L L D + H + Sbjct: 124 SYFKRLADTGAIALNPTAFIKKRKDGAGISLPGNLTHSLSESEMLLLFDRLAEHGAPR-- 181 Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRK 208 R+ +L L+ GLR EA+SL +++ Q + GKG K R + L + + Sbjct: 182 ----RDILLLKTLFMTGLRGEEAVSLCWKDVTVWQGQRYFNVLGKGSKERRIYLPDEIDE 237 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS---TTAHTL 265 + EY L N P+F +R G Y ++++L ++ + H Sbjct: 238 GLNEYGKLTGTSPNQ----PIFGNLRKPSRRIGRHALY-HMVKKWLTTLMNRPDVSPHWF 292 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 RHS T+L S G L SIQ++ GH + TT +Y Sbjct: 293 RHSCFTYLASKGVRLESIQALAGHASIDTTMLY 325 >gi|306818222|ref|ZP_07451953.1| phage integrase [Mobiluncus mulieris ATCC 35239] gi|304649186|gb|EFM46480.1| phage integrase [Mobiluncus mulieris ATCC 35239] Length = 266 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/218 (26%), Positives = 94/218 (43%), Gaps = 36/218 (16%) Query: 89 KRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 +RS G+ S F KYL + +I + L + + + +PR E + N Sbjct: 67 RRSAQGVASTFFKYLVREEIVKKDPTLGLAPVHVPDGVPRPAPEAAVRHALANA------ 120 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207 R + ++ CGLR E L + D LR++GKG ++RI+P+ Sbjct: 121 -----PDRTALMVRFAAFCGLRACEIAKLRGSDW--DGELLRVKGKGGRVRIIPVQ---D 170 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLG--LPLSTTAHT 264 + ++ + + CP L F G I G + +Y +L LG LP T H Sbjct: 171 RTLIYHLEQCPGWL--------FPGRIDGH-----LSAQYTAKL---LGEYLPAGVTGHA 214 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 LRH F T DL ++ +++GH + TT+ Y ++ Sbjct: 215 LRHRFGTVAYRATHDLLAVGAVMGHAKTDTTKRYIQLD 252 >gi|228950100|ref|ZP_04112285.1| Integrase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809627|gb|EEM56063.1| Integrase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 380 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 77/344 (22%), Positives = 144/344 (41%), Gaps = 58/344 (16%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIF-----LAFYTEEKI 58 NN+P V ++ LE++ LS TL +Y + +F + LA + Sbjct: 37 NNMPWYV-----------IEYLEMKTALSPATLYAYITEFEKFFKWIILKRLAVVNGNVV 85 Query: 59 T------IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112 T I+T++ L ++ F + + I R++ R+ S +KS KYL + Sbjct: 86 TNITDIPIETLQTLPLNDVNRFHMYLQGEGIETRAINRTFSALKSLFKYLVQNSEDEHGK 145 Query: 113 ILNMRNLKKSNSLPRALNEKQA-LTLVDNVLLHTSHETKWI------------------- 152 RN+ + L + + A V N++ + + + ++ Sbjct: 146 SYLSRNVMEKIELHKEKVDAAARADEVANIIFNDNEDVAFLRFLINDYATILKETSTRKY 205 Query: 153 ------DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 R+ A++ L+ G GLR+SE SLT +I Q T+++ KG+K + S Sbjct: 206 NYFLRDKERDIALISLILGTGLRVSELASLTLSSINFRQGTIKVTRKGNKKSSILATKSC 265 Query: 207 RKAILEYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 + EY +CP + ++ + + ++G + L+ Q + + Sbjct: 266 LDDVQEYMKVRLEKYMCPPEEDI-LFVTRYQG-KYTQLSVRAIQNLVEKYSS--AFDEKR 321 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + H LRH++AT+ DL ++ LGH + T IYTN+N++ Sbjct: 322 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNE 365 >gi|120554184|ref|YP_958535.1| phage integrase family protein [Marinobacter aquaeolei VT8] gi|120324033|gb|ABM18348.1| phage integrase family protein [Marinobacter aquaeolei VT8] Length = 246 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 96/205 (46%), Gaps = 28/205 (13%) Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178 L+ +++P+ L + + L L+++ SH + IL L++ G R+SE L++TP Sbjct: 51 LESLDTMPKYLLKPEILGLLES----ESHPM------HRLILDLMWCTGARVSEVLAITP 100 Query: 179 QNIMDDQSTLRI------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232 + +DD + QG G P S++++ + + D IQ L+ G Sbjct: 101 ASFIDDGYDFGVMLKTLKQGAGR-----PSKRSLQRSPKRFIPILDRDFQTRIQSYLWMG 155 Query: 233 IRGK-----PLNPGVFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285 K P+ I +L +G P HT RHSFA HLL +G L+ + Sbjct: 156 KFRKDERIFPITRQAVSANIDRLIDQVGGEPPFKIGCHTFRHSFAVHLLLHGRPLKFVSQ 215 Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWM 310 +LGH + + ++YTNV + +G ++ Sbjct: 216 LLGHRSVESPEVYTNVLTFDGAHFL 240 >gi|261420932|ref|YP_003254613.1| integrase [Geobacillus sp. Y412MC61] gi|319768580|ref|YP_004134080.1| integrase family protein [Geobacillus sp. Y412MC52] gi|261377390|gb|ACX80131.1| integrase family protein [Geobacillus sp. Y412MC61] gi|317113446|gb|ADU95937.1| integrase family protein [Geobacillus sp. Y412MC52] Length = 304 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 70/301 (23%), Positives = 136/301 (45%), Gaps = 31/301 (10%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 +L+E +++L+ +G S T+ SY D QFL L ++ +T IR+ I+ Sbjct: 1 MLREYEDYLRG----KGYSPNTVLSYLNDVNQFLKDLNLRPDDYVTSADIRKW----IQQ 52 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA---LN 130 + + ++ R L+ +++F + ++ ++ + + +LK ++ L Sbjct: 53 MLHPDEGKPFAVSTINRRLNALRNFYGWAVEQGYVEQNPMNGIADLKTADEDQETIMWLT 112 Query: 131 EKQALTLVDNVLLHTSHETKWIDA-----RNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 E++ L+ + +H ++ +D R+ AI+YL GLR+ E +L +I + Sbjct: 113 EEEFEDLLHRMRKMLAH-SRGVDPEEKYRRDRAIVYLFVYAGLRVEELSNLKLTDIDLEM 171 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL------N 239 LRI GKG K+R VP+ + + E D F ++ + P + P + Sbjct: 172 KRLRIVGKGMKVRTVPISNIL---LAELQDWLAFRAEMSKKKP---HVAASPYVFYSQRS 225 Query: 240 PGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLL-SNGGDLRSIQSILGHFRLSTTQI 297 P R I+++ LP T H RH+F +L + D+ ++ + GH ++TT Sbjct: 226 PKFSVRGIQRMVEGYSLPGKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSHIATTSR 285 Query: 298 Y 298 Y Sbjct: 286 Y 286 >gi|295696553|ref|YP_003589791.1| integrase family protein [Bacillus tusciae DSM 2912] gi|295412155|gb|ADG06647.1| integrase family protein [Bacillus tusciae DSM 2912] Length = 305 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 68/279 (24%), Positives = 123/279 (44%), Gaps = 22/279 (7%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 G S LTL+ Y AF+ E T + L + A + R + +L+ Sbjct: 21 GRSPLTLRDYHNHVP------AFFQEHPDTWPDVHALKRAVV-AHFAGLRERSATHYNLR 73 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 R +K+F + + + ++ + + +K++ PR L+++ TL LL ++ Sbjct: 74 REY--LKAFFSWCVREEYLPKNPVDGIPK-RKNDGTPRNLDDQ---TL--KRLLELPDKS 125 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSV 206 + R+ A++ L G+R EAL L P + + + K R V + P Sbjct: 126 TYAGVRDHALVLLQLDTGIRPGEALQLLPAHFNLGALEVTVPSATAKTRTARTVVMSPQT 185 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 KAI + P D ++ P+F G+P++ ++ + + Q R LG+ + T + LR Sbjct: 186 AKAIRRLLSVRPADWTDDV--PVFATYSGRPMDRNMWGKRLAQYGRTLGVRI--TPYMLR 241 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 HS A L GG + ++Q LGH L T+ Y ++ + Sbjct: 242 HSSALMFLRGGGHVFALQRQLGHTSLVMTKRYVHLADSD 280 >gi|89147665|gb|ABD62691.1| integrase [uncultured bacterium] Length = 163 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/59 (50%), Positives = 40/59 (67%) Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 Q ++ R G+ T H+LRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 104 LQLAVKAAARASGICKPATCHSLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|223369852|gb|ACM88795.1| integrase [uncultured bacterium] Length = 163 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 41/60 (68%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 QR ++Q R G+ + HTLRHSFATHLL +G D+R++Q +LGH + TT IYT+V Sbjct: 103 ALQRAVKQALRKAGIVKPGSVHTLRHSFATHLLESGYDIRTVQELLGHADVKTTMIYTHV 162 >gi|170289797|ref|YP_001736613.1| integrase family protein [Candidatus Korarchaeum cryptofilum OPF8] gi|170173877|gb|ACB06930.1| integrase family protein [Candidatus Korarchaeum cryptofilum OPF8] Length = 262 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 84/187 (44%), Gaps = 26/187 (13%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHET-KWIDARNS---AILYLLYGCGLRISEALS 175 +++ SL + + VD L+ T E K I+ A + +L G+R+ E +S Sbjct: 78 EEARSLAKEIRSPAPPPKVDEDLIRTYGEIEKLIEGAKPIVRAAIMMLAETGMRVGELVS 137 Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235 L ++ ++GKGDK R V + + E RG R Sbjct: 138 LKWDDLDLGNRRALVKGKGDKSRYVYFTERTERFLRELER---------------RGSRV 182 Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 P++ +R++ QL L T H +RH+FA LS+GG R +Q ILGH L TT Sbjct: 183 FPVSDRTVRRWVSQL-------LKTHPHAVRHAFAVWFLSSGGSPRVLQHILGHSNLRTT 235 Query: 296 QIYTNVN 302 +IY +++ Sbjct: 236 EIYLDIS 242 >gi|116621638|ref|YP_823794.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116224800|gb|ABJ83509.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 710 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 76/299 (25%), Positives = 130/299 (43%), Gaps = 19/299 (6%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 E++ WL ++ GLSK TL+ R F+ +L ++ ++ ++ +I Sbjct: 400 EVIDGYGRWLVDIH---GLSKGTLRKNGDAARVFVQWLG----DRANRDSLSRIGLADID 452 Query: 73 AFISKRRTQKIGDRSLKRSLS-GIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRAL 129 ++S R R+ + +S ++SFL+YL K + S +++ + K +PRA Sbjct: 453 QYLSWRMPGL--RRATRHGVSQCLRSFLRYLHAEKFVAKDLSPVVSGPIMYKFEDIPRAF 510 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 E Q L++ T + R+ AIL LL GLR E + L +I LR Sbjct: 511 TEPQVKALLET----TRQDKTPTGLRDHAILMLLSTYGLRAGEVVRLRLDDIDWRADRLR 566 Query: 190 I-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 + Q K +PLLP V +A+L Y ++ R G G I+ Sbjct: 567 VRQSKSGAGSFLPLLPPVGEALLNYLRRGRPQTDIREVFLRVRAPHGAFPWGGSLHTIIQ 626 Query: 249 QLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + + G+ + AH R + A LL L+SI +LGH +T+IY + +++ Sbjct: 627 RRLKQAGIQVKGRHGAHAFRFARAGSLLEADVPLKSIGDLLGHRSAESTEIYLRLATED 685 >gi|282899197|ref|ZP_06307172.1| Phage integrase protein [Cylindrospermopsis raciborskii CS-505] gi|281195912|gb|EFA70834.1| Phage integrase protein [Cylindrospermopsis raciborskii CS-505] Length = 158 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 77/149 (51%), Gaps = 13/149 (8%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSVRKAI 210 + RN IL LL+ CGLR+ E L +I D+ ST + I GKG+K R + ++P + A Sbjct: 7 NTRNRLILQLLFFCGLRVGELTILLWADIKDNGSTAYVHITGKGNKQRTL-IIPPLLWAS 65 Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 L+ + + P+F+ +G K L +R + +G+ S + H LRH+ Sbjct: 66 LKSHKTTN-------ESPVFKSRKGGKNLTQKAVWDIVRTASQRIGI--SASPHWLRHTH 116 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 A+ L NG D+ + + LGH ++TT Y Sbjct: 117 ASLALHNGADINQVSTSLGHSSVATTTKY 145 >gi|149915553|ref|ZP_01904079.1| Integrase [Roseobacter sp. AzwK-3b] gi|149810445|gb|EDM70288.1| Integrase [Roseobacter sp. AzwK-3b] Length = 188 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 13/158 (8%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-------IQGKGDKIRIVPLLPSVR 207 R+ I+ + GLR E +L ++ D+ +R +Q KG K R V + +R Sbjct: 27 RDETIVLFSFYAGLRAKEIAALKRGDVFDEAGAVREQFILSAVQSKGGKTRTVYVNQRLR 86 Query: 208 KAILEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 +A+ EY DLNL + PLF +G + + + R +GL ++H+ R Sbjct: 87 RALAEY----AADLNLHDPNRPLFESQKGGHFSANTMCQLFLDIYRAVGLK-DASSHSGR 141 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 ++ T L + G +R + + GH +STTQ Y +VN++ Sbjct: 142 RTYITRLANKGVGVRLLAELAGHSHISTTQRYIDVNAE 179 >gi|186683565|ref|YP_001866761.1| phage integrase family protein [Nostoc punctiforme PCC 73102] gi|186466017|gb|ACC81818.1| phage integrase family protein [Nostoc punctiforme PCC 73102] Length = 193 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 77/159 (48%), Gaps = 9/159 (5%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212 RN A++ L++ GLR+SEA L I D+ + KG + PL +A+ + Sbjct: 36 VRNYALVLLIFRHGLRVSEACDLRWDAISFLDEEIFITRKKGSDSGVHPLPVDEIEALKQ 95 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 +L ++ N +F G RG+ L P QR + +L L + H LRH+ + Sbjct: 96 LKEL---NIGGNY---VFIGERGERLTPAAVQRLLTRLGEVAELNIKIHPHQLRHACGYY 149 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK--NGGDW 309 L++ G R IQ LGH + T+ YT VNSK +G W Sbjct: 150 LVNEGHSTRFIQEFLGHRDIRHTEKYTKVNSKRFSGIKW 188 >gi|71733392|ref|YP_273045.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71553945|gb|AAZ33156.1| site-specific recombinase, phage integrase family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 318 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 73/289 (25%), Positives = 120/289 (41%), Gaps = 29/289 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W N+ R T ++Y+ D R+F F+ E+ R ++ + A+ ++ Sbjct: 31 WFANIRNPR-----TRRAYQADLREFCSFVDLAGAEEF-----RVVNRAHVLAWRAQLER 80 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN-LKKSNSLPRALNEKQALTLVD 139 + + +++R L+ + S YL ++N L N + P NE + L Sbjct: 81 RALSGATIRRKLATLASPFDYL------LDNNALAGGNQVHGVARPPVETNEGKTPALGG 134 Query: 140 NV---LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194 + LL + R+ AIL +L GLR E L ++ + + LRI GKG Sbjct: 135 DQTKRLLDAPDDESLQGVRDRAILAVLLYQGLRREELSLLQTGDLQERRGVKHLRIHGKG 194 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 KIR +PL P + I Y L LFR +RGK G+ + + + Sbjct: 195 GKIRYLPLHPVAAERIYVY--LVRDGDRAQTPGALFRSLRGKTSGTGITGKGVYGVVSKW 252 Query: 255 GLPL-----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 H LR + AT+ L + D+ +Q LGH +STT++Y Sbjct: 253 ASAAQIHVDGLGVHGLRATAATNALEHDADIAKVQIWLGHANISTTRLY 301 >gi|89147402|gb|ABD62561.1| integrase [uncultured bacterium] Length = 163 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/59 (50%), Positives = 42/59 (71%) Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 Q+ ++ R GL + HTLRHSFATHLL++G D+R++Q +LGH +STT IYT+V Sbjct: 104 LQKAVKDAIRRAGLQKRGSCHTLRHSFATHLLADGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|221642149|ref|YP_002533236.1| integrase/recombinase, putative [Bacillus cereus Q1] gi|221243084|gb|ACM15793.1| integrase/recombinase, putative [Bacillus cereus Q1] Length = 347 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 124/287 (43%), Gaps = 41/287 (14%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 S+ T + Y D FL ++ K +I TI++LS+ E+ + + ++K +L+R Sbjct: 62 SERTKKLYLHDLSHFLRYI------KESIGTIKELSHNEVEIYFYQL-SKKYAASTLRRK 114 Query: 92 LSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 + ++ FLKY+ ++ S+ L ++KK + R L ++ N +L T +T Sbjct: 115 KTVVQQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLFPEEV-----NEILDTLKKT 169 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIVPLLPS 205 + ++ +LL GLRI E + ++ S LR+ GKG+K R V + Sbjct: 170 NFF---MYSLFFLLTTTGLRIEEVANAKWADLAFHPSLNVYLLRVVGKGNKTREVRIFED 226 Query: 206 VRKAILEYYDLCPF--------DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 V DLC +L+ + G +Y+ + LP Sbjct: 227 VLN------DLCRLRQLRKQTSELDASSSSAFLPKADGSHYRADYLSKYVAEKIEETNLP 280 Query: 258 L------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 T HT RH FA HL+ G +L+ I+ LGH + TT+ Y Sbjct: 281 FLRYRKDRITPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERY 327 >gi|160880332|ref|YP_001559300.1| integrase family protein [Clostridium phytofermentans ISDg] gi|160428998|gb|ABX42561.1| integrase family protein [Clostridium phytofermentans ISDg] Length = 350 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 79/313 (25%), Positives = 135/313 (43%), Gaps = 34/313 (10%) Query: 13 ELLKERQNWLQNL--EIERGLSKLTLQSYECDTRQFLIFL-----AFYTE--EKITIQTI 63 ELL + WL++ IE+ T +Y D + FL FL +F + ++I + Sbjct: 20 ELLTQLPPWLKDFFRGIEQSTEPRTRIAYAIDLQTFLEFLQSQNPSFEGKPIKEIPRDVL 79 Query: 64 RQLSYTEIRAFISKRRTQKIG--------DRSLKRSLSGIKSFLKYLKKRKITTESNILN 115 L T+I ++ + K DR++KR LS +++ Y K KI E+ +L Sbjct: 80 TSLKSTDIEEYLEHLKYYKNAEGKEFINNDRAMKRKLSTLRTMYSYYHKNKIIDENPVLQ 139 Query: 116 MRNLKKSNSLPRALNEKQALTLVDNV-----LLHTS---HETKWIDARNSAILYLLYGCG 167 + K L + L+D V L T HE + R+ A++ LL G G Sbjct: 140 VDMPKIHEKAIVRLEINEVAELLDVVETGSKLTDTQKVFHEKNKV--RDLALMTLLLGTG 197 Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD----LCPFDLNL 223 +R+SE + L ++ D +++ KG V VR A+L Y D + D + Sbjct: 198 IRVSECVGLDLTDVDFDNDRIKVVRKGGYESYVYFGEEVRDALLSYMDERDQIIAVDGHE 257 Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283 N LF R ++ + +++ + + T H LR ++ T L GD+ + Sbjct: 258 N---ALFLSSRRSRISVRNVEVLVKKYAQTVTTLKKITPHKLRSTYGTSLYQETGDIYLV 314 Query: 284 QSILGHFRLSTTQ 296 +LGH ++TT+ Sbjct: 315 ADVLGHRDVNTTK 327 >gi|312621873|ref|YP_004023486.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002] gi|312202340|gb|ADQ45667.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002] Length = 310 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 123/290 (42%), Gaps = 46/290 (15%) Query: 30 GLSKLTLQSYECDTRQFLIFL--AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87 G S+LTL+ YE F F+ E+++ LS Q I + Sbjct: 26 GRSELTLRDYEYHVTHFFDLYPNCFHDEQQLKKCLYEYLS-------------QPIKPAT 72 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV------ 141 L+ +K+F K+ E NIL KSN L L +K+A + N+ Sbjct: 73 YNLRLTYLKAFFKW------CVEENIL------KSNPL-EGLPKKKAEGRIVNIDTEILE 119 Query: 142 -LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI--- 197 LL + + R+ A++ L G+R EA SL ++ D TL++ D Sbjct: 120 KLLKLPDKNTFCGLRDYALILLTLDTGIRPKEAFSLLIEHF--DFKTLQVFIPSDAAKTR 177 Query: 198 --RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 R++P+LP A+ + + + ++P+F + G+PL ++ + + LG Sbjct: 178 VSRVLPILPVTANAVKKL--IAVRHPEWDEKVPVFCTVTGRPLTRDIWNDRMEMYSKKLG 235 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + + + LRH+FA L NGG S+Q LGH L T+ Y + + Sbjct: 236 VKIR--PYDLRHTFALLYLKNGGYELSLQKTLGHTTLEMTKRYVHFTQND 283 >gi|75763022|ref|ZP_00742813.1| Probable integrase/recombinase ripX [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228967124|ref|ZP_04128160.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar sotto str. T04001] gi|74489484|gb|EAO52909.1| Probable integrase/recombinase ripX [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228792493|gb|EEM40059.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar sotto str. T04001] Length = 53 Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 40/55 (72%), Gaps = 4/55 (7%) Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 +RHSFATHLL NG DLR++Q +LGH +STTQIYT+V+ + ++Y Q HP Sbjct: 1 MRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTR----LKDVYKQFHP 51 >gi|167461250|ref|ZP_02326339.1| phage integrase family protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382057|ref|ZP_08055993.1| site-specific tyrosine recombinase XerC-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153972|gb|EFX46316.1| site-specific tyrosine recombinase XerC-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 301 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 77/299 (25%), Positives = 129/299 (43%), Gaps = 36/299 (12%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFL--AFYTEEKITIQTIRQLSYTEIRAFIS 76 Q+++ L L+ TL+ Y D + F+ + A + EE++ + + T R + Sbjct: 16 QDFIHALTTHEDLNPKTLKEYASDLKHFIGWFETADHQEEEVLFRIEDVATPTLTRYRET 75 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL-PRALNEKQAL 135 ++ K+ ++ R L +K F ++ +ESN L + PR + +K+ Sbjct: 76 AQKVMKLKPATINRRLITLKRFFEW-----AVSESNPSKPVKLVPEEKISPRQMTDKEEA 130 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM----DDQSTLRIQ 191 L+ + H R+ IL L++ GLR E L P +I Q T+R Sbjct: 131 ALIAA----SEHGGSL---RDQTILILMFHTGLRTMEVCDLAPGDIQIGKRRGQLTVR-S 182 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNP----GVFQRY 246 GK +K R VPL + R A+ +Y + P D LF + G L + Q+Y Sbjct: 183 GKRNKQREVPLNATCRAALEKYLAVHPSDSPY-----LFPSEKTGDRLTERALRHLIQKY 237 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 ++ R GL +AH LRH F ++++ L + I+GH L TT IY + Sbjct: 238 MKSA-RLKGL----SAHDLRHRFG-YVMAENTPLHRLAQIMGHDSLDTTMIYVKATRSD 290 >gi|299538026|ref|ZP_07051312.1| hypothetical protein BFZC1_18510 [Lysinibacillus fusiformis ZC1] gi|298726608|gb|EFI67197.1| hypothetical protein BFZC1_18510 [Lysinibacillus fusiformis ZC1] Length = 293 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 66/219 (30%), Positives = 95/219 (43%), Gaps = 15/219 (6%) Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 D ++K L + SF + ++ +S I K+ LPR L + L + L Sbjct: 75 SDATVKLRLCILSSFYNFCVIEELLEKSPI-------KTRWLPR-LPQPIPQYLGKSELA 126 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 T +T+ RN ++ + G R+SE + L ++ + T R+ GKG KIR V Sbjct: 127 KTRKQTEESTLRNRVLIEFMLTSGCRVSEIVGLNQSDVDLENRTARVIGKGKKIREVHF- 185 Query: 204 PSVRKAIL-EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 S + AIL E Y + LF GK L Q + + L Sbjct: 186 -SEKCAILMERY----LTDEVKKCEALFVTANGKRLGVRGVQYIVHDIGEEAQLDKRLFP 240 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 H LRH+FAT LLS G +L I LGH + TTQIY + Sbjct: 241 HRLRHTFATELLSKGAELSFIADELGHTDIRTTQIYARL 279 >gi|89147412|gb|ABD62566.1| integrase [uncultured bacterium] Length = 163 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/59 (52%), Positives = 39/59 (66%) Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 Q +++ R G T HTLRHSFATHLL NG D+R++Q +LGH L TT IYT+V Sbjct: 104 LQMAMKRAVRAWGGAKPATCHTLRHSFATHLLENGYDIRTVQELLGHADLQTTMIYTHV 162 >gi|302349105|ref|YP_003816743.1| Tyrosine recombinase XerC/XerD [Acidilobus saccharovorans 345-15] gi|302329517|gb|ADL19712.1| Tyrosine recombinase XerC/XerD [Acidilobus saccharovorans 345-15] Length = 324 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 76/303 (25%), Positives = 138/303 (45%), Gaps = 47/303 (15%) Query: 7 PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66 PE++S + +++L LE G SKLTL+SY + F + + + QL Sbjct: 11 PEVLSKSVADAVESFLSALEAS-GASKLTLKSYRAALQSFASHVG-------PSRPVSQL 62 Query: 67 SYTEIRAFISKRRTQ-KIGDRSLKRSLSG------IKSFLKYLKKRKITTESNILNMRNL 119 S + +++S+ R++ +G R + S + ++ FL++L + E Sbjct: 63 SQADYLSWLSEMRSKGPVGPRGGRWSSTVHYYTIFVRRFLQWLGISGLPAEP-------- 114 Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 ++ + AL+ K+ ++ +K D + IL L+ GLR E ++LT Sbjct: 115 QRRSEFSGALSWKEVEAMM----------SKARDLYDLLILSLMAESGLRAREVVNLTWG 164 Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239 +I + R++GK K R+V +L V +++L L P N + ++ I + Sbjct: 165 DIDLAKGEARVRGKYGKERLV-VLGQVARSVLSV--LPPGGPNERVVKLSYQAIYDR--- 218 Query: 240 PGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 ++ L R G+ +S H LRH+FAT L G L +Q +LGH + TQ+Y Sbjct: 219 -------VKSLARRAGIDVSKVRPHVLRHTFATEALRRGMSLPVLQRLLGHSDIRITQVY 271 Query: 299 TNV 301 ++ Sbjct: 272 LHL 274 >gi|295105592|emb|CBL03136.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3] Length = 398 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 78/313 (24%), Positives = 138/313 (44%), Gaps = 52/313 (16%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFL-----------------------AFYTEEK 57 +++ LE+ G S T SY CD R F F+ AF+ Sbjct: 26 YVRYLEVIAGKSANTAFSYYCDLRSFSRFMKRRRGLVATDAEFKEIDPKGLDTAFWG--S 83 Query: 58 ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNM 116 IT + I + Y F+++ K S R L+ + F YL + +E + Sbjct: 84 ITKEDIYEYLY-----FLNRECGNK--KSSTARRLASLHGFYDYLVNQVNRLSEDPTAAI 136 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 R K+ LP+ L +Q+++L L ++ R+ ++ L CG+R++E + + Sbjct: 137 RPPKQDKVLPKYLTAEQSISL-----LESTQTQSDFPERDYCMVVLFLNCGMRLAELVGM 191 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-------DLCPFDLNLNIQLPL 229 +I +Q +R+ GKG K R+V L + +A+ Y L P + + I Sbjct: 192 DLGDIDLEQRQIRLFGKGHKERMVYLNDACVEALQLYLRKRNTMEGLSPKEKAVFITR-- 249 Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG-DLRSIQSILG 288 +R + ++ ++ I + GL +T H LRH+ AT + G D+ +++ +LG Sbjct: 250 ---MRKERISNRRVEQLISGAMKAAGLKGFST-HKLRHTAATLMYQTGNVDILTLKQLLG 305 Query: 289 HFRLSTTQIYTNV 301 H + TTQIYT++ Sbjct: 306 HSSVGTTQIYTHL 318 >gi|38637705|ref|NP_942679.1| putative integrase/recombinase [Ralstonia eutropha H16] gi|38637800|ref|NP_942774.1| putative integrase/recombinase [Ralstonia eutropha H16] gi|32527043|gb|AAP85793.1| putative integrase/recombinase [Ralstonia eutropha H16] gi|32527138|gb|AAP85888.1| putative integrase/recombinase [Ralstonia eutropha H16] Length = 332 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 75/297 (25%), Positives = 119/297 (40%), Gaps = 40/297 (13%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQ 81 Q L +R S T+ SY RQFL F + + ++ I AF+ + Q Sbjct: 17 QRLMQQRQASPHTISSYRDTFRQFLKFAQQRLHRQPSRMNFEEIDAPLIVAFLDDLEQRQ 76 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNI---LNMRNLKKSNSLPRALNEKQALTLV 138 + RS L+ I SF +Y + I L + + + + +L + L ++ Sbjct: 77 GVSVRSRNLRLTAIHSFFRYAALETPAHSAQIQRVLAIPSKRFTRTLVQFLTRQEV---- 132 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRIQGKGDKI 197 + LL + W R+ A L + GLR+SE L + ++ + +R+ GKG K Sbjct: 133 -DALLAAPDQRTWAGRRDHAFLLVAVQTGLRLSEMTGLKRDDLVLGTGAHVRVIGKGRKE 191 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR----------------GKPLNPG 241 R P++ S A+L+ + P ++ P RG R + P Sbjct: 192 RCTPIVRST-LAVLKAWLREPQRGEDDVLFPSARGERLTVHGVQYLLNKHRETASKICPS 250 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + Q+ + T H LRH+ A LL G D I LGH + TTQIY Sbjct: 251 LKQKQV-------------TVHRLRHTMAMDLLQAGVDRSVIALWLGHESVETTQIY 294 >gi|218662495|ref|ZP_03518425.1| site-specific tyrosine recombinase XerD [Rhizobium etli IE4771] Length = 140 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 46/68 (67%), Gaps = 5/68 (7%) Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 + H +RH+FA+HLL+NG DLR +Q +LGH +STTQIYT+V + ++ QTH Sbjct: 77 SPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER-----LQQLVQTHHP 131 Query: 321 ITQKDKKN 328 + ++ KK+ Sbjct: 132 LAKQAKKH 139 >gi|30908734|gb|AAP37599.1| IntI [uncultured bacterium] Length = 161 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/64 (46%), Positives = 43/64 (67%) Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 ++ + QR + R GL T+HT RHSFATHLL++G D+R++Q +LGH + TT I Sbjct: 98 VDESLVQRAVAVAVRQAGLTKRVTSHTFRHSFATHLLADGYDIRTVQELLGHSDVRTTMI 157 Query: 298 YTNV 301 YT+V Sbjct: 158 YTHV 161 >gi|89147522|gb|ABD62621.1| integrase [uncultured bacterium] Length = 163 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 43/69 (62%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 +R ++ QR ++ +GL + H LRHSFATHLL G D+R++Q +LGH + Sbjct: 94 VRRHHIHENALQRAVKDASVQVGLTKQMSCHVLRHSFATHLLEGGYDIRTVQELLGHADV 153 Query: 293 STTQIYTNV 301 STT IYT+V Sbjct: 154 STTMIYTHV 162 >gi|116751213|ref|YP_847900.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB] gi|116700277|gb|ABK19465.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB] Length = 304 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/215 (25%), Positives = 97/215 (45%), Gaps = 5/215 (2%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 SL R + +++F + + + ++ ++R + LP L + L+ + Sbjct: 83 SLHRMKAAVRAFFAWAVEVGVVDDNPARSIRMQRLPRKLPVFLTTAEKKRLLKEL----K 138 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 T + R+ A++ +L G G+R+ E +L +I D LR++ KG+ ++ + + Sbjct: 139 GRTDFSALRDRAMIEVLLGTGIRLGELAALDMDDIDLDAKHLRVRAKGNVPQVKFIKTDL 198 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 R + Y ++ G+ + R LR+ G+ T H LR Sbjct: 199 RTLLRRYLAERRRHGRPEMEALFLSNRDGRLCQRQIANRLAHWLRKA-GIEKELTPHGLR 257 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 H+FATHL DL +Q LGH +STTQIYT++ Sbjct: 258 HTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHL 292 >gi|20804053|emb|CAD31630.1| HYPOTHETICAL INTEGRASE/RECOMBINASE PROTEIN [Mesorhizobium loti R7A] Length = 333 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 75/296 (25%), Positives = 122/296 (41%), Gaps = 21/296 (7%) Query: 19 QNWLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 + W + L RG+S T+ SY R F + T+R L I AF+ Sbjct: 12 ERWFTDRLMRHRGVSSNTIASYRDTFRLLFAFAQTRLGRSPSQLTLRDLDAPFIGAFLED 71 Query: 78 R---RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 R+ + R+L+ L+ I+SF +Y + + I + + R L Q Sbjct: 72 LETLRSASVRTRNLR--LTAIRSFFRYASFEEPAHSAQIHRVLAIPSKRCDKRQL---QF 126 Query: 135 LTLVD-NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQG 192 LT + +L + W+ R+ +L L GLR+SE + L ++M + +R G Sbjct: 127 LTRPEIEAILACPDRSTWLGRRDHTLLLLAAQTGLRVSEIIDLDRHSVMLGHGAHVRCVG 186 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP----GVFQRYIR 248 KG K R PL ++A+ + + + LF + G L+ + +Y+ Sbjct: 187 KGRKERSTPLTKVAQQALRGWLN----EPRKRGATALFPNMHGSKLSADGVQALLNKYVA 242 Query: 249 QLRRYLGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + R + S + H LRHS A LL G D I LGH + TT Y + + Sbjct: 243 KAREHCVTLRSKRVSPHVLRHSAAMELLQAGVDCSVIALWLGHEAMETTLTYLHAH 298 >gi|298388138|ref|ZP_06997681.1| tyrosine recombinase [Bacteroides sp. 1_1_14] gi|298259111|gb|EFI01992.1| tyrosine recombinase [Bacteroides sp. 1_1_14] Length = 320 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 80/174 (45%), Gaps = 16/174 (9%) Query: 99 LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158 +K+ ++ + E + K+ +LP L++++ ++D + D R Sbjct: 162 IKFYYEKVLGQERRCYKVNRAKREKTLPDVLSKEEIKKILDATV---------TDLRFFC 212 Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC 217 + +LY GLRISE L L P +I + +S +R+ QGKG K R L + K + EY L Sbjct: 213 MFSILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRYTLLSKPLMKKLTEYNRL- 271 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 ++ LF G+P + + ++ R G+ H LRHSFAT Sbjct: 272 -----YKPKVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFAT 320 >gi|299137463|ref|ZP_07030645.1| integrase family protein [Acidobacterium sp. MP5ACTX8] gi|298600868|gb|EFI57024.1| integrase family protein [Acidobacterium sp. MP5ACTX8] Length = 430 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 75/304 (24%), Positives = 127/304 (41%), Gaps = 20/304 (6%) Query: 7 PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66 P+ + FE L + + +L RGL T+++YE R FL F + + + + Sbjct: 129 PQEMWFEELL--RAYSHSLVYNRGLVHRTVETYESKARTFLKFFSR------SNHNLSGI 180 Query: 67 SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126 S ++ AF+ ++ ++ ++ I+SFL++ + R + KS +P Sbjct: 181 SLLDVDAFMQEKVMEEWKAEAIASHCQAIRSFLRFAESRNWCDR----GIHQGIKSPRVP 236 Query: 127 RALNEKQALTLVD-NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 R E + T LL + K + R A+L L GLR SE + L ++ Sbjct: 237 RNTGESKGPTWPQVKKLLRSFKGQKASERRAKAMLMLCAIYGLRASEVIGLQLEDFDWRN 296 Query: 186 STLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK--PLNPGV 242 T ++ K ++ P+ V +AIL Y D LF +R ++ Sbjct: 297 ETFMVRRAKRGGVQHFPMEYEVGEAILAYLKQ---DRPRCASRLLFVSLRAPYVAVSTTS 353 Query: 243 FQRYIRQLRRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 R + R G+ L+ H+LRH+ AT LL G L I LGH L + IY Sbjct: 354 LWRAVGPRLRSFGVQLNHVGVHSLRHACATRLLHKGSSLHQIADFLGHRDLKSVSIYARC 413 Query: 302 NSKN 305 + ++ Sbjct: 414 DVRS 417 >gi|89147683|gb|ABD62700.1| integrase [uncultured bacterium] Length = 161 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/58 (51%), Positives = 40/58 (68%) Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 QR ++ + L T HT RHSFATH+L NG D+R++Q +LGH +STTQIYT+V Sbjct: 103 QRAVKLAAKTARLAKPVTPHTFRHSFATHVLENGYDIRTVQDLLGHKDVSTTQIYTHV 160 >gi|89147502|gb|ABD62611.1| integrase [uncultured bacterium] Length = 163 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 44/69 (63%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 +R ++ Q+ +++ G+ + HTLRHSFATHLL G D+R++Q +LGH + Sbjct: 94 VRRHHIHENGLQKQVKKAVEAAGISKKVSCHTLRHSFATHLLEAGSDIRTVQELLGHADV 153 Query: 293 STTQIYTNV 301 STT IYT+V Sbjct: 154 STTMIYTHV 162 >gi|138898385|ref|YP_001127570.1| putative integrase/recombinase Xer [Geobacillus thermodenitrificans NG80-2] gi|134268631|gb|ABO68825.1| Putative integrase/recombinase Xer [Geobacillus thermodenitrificans NG80-2] Length = 307 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 74/307 (24%), Positives = 142/307 (46%), Gaps = 41/307 (13%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 ++L E + +LQ E+G S T+ SY D QFL L + +T IR+ I+ Sbjct: 3 KMLHEYETYLQ----EKGFSPNTVISYLNDVNQFLKDLHLRPGDYVTSADIRKW----IQ 54 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 ++ + + ++ R L+ ++SF + + ++ + ++++LK ++ + + Sbjct: 55 QMLNPAEGKPLAISTINRRLNSLRSFYAWAVEHHKIEQNPMKDIQDLKSADE-----DNE 109 Query: 133 QALTLVDNV---LLHTSH----ETKWIDA-----RNSAILYLLYGCGLRISEALSLTPQN 180 + + L + LLH +++ +D R+ A++YLL GLR+ E +L + Sbjct: 110 KIMWLTEEEFEDLLHRMRKKPVQSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTD 169 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-------LFRGI 233 + + +RI GKG K+R VP + ++ A LE D F + + P +F Sbjct: 170 LDLEMKRIRIVGKGMKVRTVP-ISNILLAELE--DWLKFRAEMAKKKPHVAESPYVFYSQ 226 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFR 291 R +P R I+++ LP T H RH+F +L + D+ ++ + GH Sbjct: 227 R----SPKFSVRGIQRMIESYSLPNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSN 282 Query: 292 LSTTQIY 298 ++TT Y Sbjct: 283 IATTSRY 289 >gi|302343256|ref|YP_003807785.1| integrase family protein [Desulfarculus baarsii DSM 2075] gi|301639869|gb|ADK85191.1| integrase family protein [Desulfarculus baarsii DSM 2075] Length = 304 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/215 (24%), Positives = 98/215 (45%), Gaps = 5/215 (2%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S+ R + +++F + + + ++ ++R + LP L + L+ + Sbjct: 83 SVHRMKAAVRAFFAWAVEVGVVDDNPARSIRMHRLPRKLPVFLTTAEKKRLLKEL----K 138 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 T + R+ A++ +L G G+R+ E +L +I D LR++ KG+ ++ + + Sbjct: 139 GRTDFSALRDRAMIEVLLGTGIRLGELAALDMDDIDLDAKHLRVRAKGNVPQVKFIKTDL 198 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 R + Y ++ G+ + R LR+ G+ T H LR Sbjct: 199 RTLLRRYLAERRRHGRPEMEALFLSNRDGRLCQRQIANRLAHWLRKA-GIEKELTPHGLR 257 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 H+FATHL S DL +Q LGH +STTQ+YT++ Sbjct: 258 HTFATHLYSATNDLLVVQRALGHRDVSTTQVYTHL 292 >gi|190404345|ref|YP_001960976.1| rcorf1 [Agrobacterium rhizogenes] gi|158322141|gb|ABW33558.1| rcorf1 [Agrobacterium rhizogenes] Length = 338 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 78/312 (25%), Positives = 125/312 (40%), Gaps = 19/312 (6%) Query: 1 MEGNNLPEIVSFELLKERQNWLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59 M G+ + +L ER W + L RG+S T+ SY R F + Sbjct: 1 MGGSVMRRTNDLAVLIER--WFTDRLMKHRGVSSNTIASYRDTFRLLFAFAQARLGRSPS 58 Query: 60 IQTIRQLSYTEIRAFISKRRTQKIGD-RSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118 T+R L I AF+ TQ+ R+ L+ I+SF +Y + ++I Sbjct: 59 QLTLRDLDAPFIGAFLEVLETQRAASVRTRNLRLTAIRSFFRYAAFEEPAHSAHI----- 113 Query: 119 LKKSNSLPRALNEKQALTLVD----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174 ++ ++P +K+ L + +L + + W+ R+ +L L GLR+SE + Sbjct: 114 -QRVLAIPSKRCDKRQLQFLTRPEIESILDCTDRSTWLGRRDYTLLLLAAQTGLRVSEVI 172 Query: 175 SLTPQNIMDDQST-LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233 L ++M + ++ GKG K R PL ++A+ + P P G Sbjct: 173 DLDRDSVMLGRGAHVQCVGKGRKERSTPLTKVAQEALRRWLKE-PGKRGATALFPNMHGG 231 Query: 234 R--GKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290 R + VF R + L + H LRHS A LL G D I LGH Sbjct: 232 RLSADGVQALVFAAVYRAREHCVSLRSKRVSPHVLRHSAAMELLQAGVDCSVIALWLGHE 291 Query: 291 RLSTTQIYTNVN 302 + TT Y + + Sbjct: 292 AMETTLTYLHAH 303 >gi|294500323|ref|YP_003564023.1| putative tyrosine recombinase XerC-like protein [Bacillus megaterium QM B1551] gi|294350260|gb|ADE70589.1| probable tyrosine recombinase XerC-like protein [Bacillus megaterium QM B1551] Length = 283 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 73/301 (24%), Positives = 139/301 (46%), Gaps = 38/301 (12%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 M+ N+L I L+ + WL IE G S T+++Y QF +L +E + Sbjct: 1 MKKNSLEVI---PLIDDFSQWL----IESGKSDNTIKTYRAVLNQFHEWL--LSEGR--- 48 Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 + Q++ ++ ++ + +++++ I F ++L+K +I NI R K Sbjct: 49 -HLDQVTKNNVQTYMINLESNNKSASTIEKAFVTISVFARFLEKPEIV--QNIERKRKEK 105 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 + +P++L + +D +L + + R+ AI+Y L G+R+SE +L ++ Sbjct: 106 NNEVVPQSLEASE----LDRLLSEVKQQG---NLRDIAIVYTLLHTGVRVSEICALNHKD 158 Query: 181 IMDDQST---LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 + ++S + KG K R VPL R ++ +Y D D N LF + Sbjct: 159 VEINKSDGFLIIRNAKGCKKRFVPLSTEARNSLKKYID--SLDSN---HEALFVSNFDRR 213 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 ++P Q Y+ L++Y + H LRH+F L+ G D+ ++ + GH ++ T+ Sbjct: 214 MSPRTVQ-YM--LKKY-----NVNPHKLRHTFCHELVKKGIDIATVAELAGHSDVNVTKR 265 Query: 298 Y 298 Y Sbjct: 266 Y 266 >gi|196250844|ref|ZP_03149530.1| integrase family protein [Geobacillus sp. G11MC16] gi|196209682|gb|EDY04455.1| integrase family protein [Geobacillus sp. G11MC16] Length = 304 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 74/306 (24%), Positives = 141/306 (46%), Gaps = 41/306 (13%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 +L E + +LQ E+G S T+ SY D QFL L + +T IR+ I+ Sbjct: 1 MLHEYETYLQ----EKGFSPNTVISYLNDVNQFLKDLHLRPGDYVTSADIRKW----IQQ 52 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 ++ + + ++ R L+ ++SF + + ++ + ++++LK ++ + ++ Sbjct: 53 MLNPAEGKPLAISTINRRLNSLRSFYAWAVEHHKLEQNPMKDIQDLKSADE-----DNEK 107 Query: 134 ALTLVDNV---LLHTSH----ETKWIDA-----RNSAILYLLYGCGLRISEALSLTPQNI 181 + L + LLH +++ +D R+ A++YLL GLR+ E +L ++ Sbjct: 108 IMWLTEEEFEDLLHRMRKKPVQSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDL 167 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-------LFRGIR 234 + +RI GKG K+R VP + ++ A LE D F + + P +F R Sbjct: 168 DLEMKRIRIVGKGMKVRTVP-ISNILLAELE--DWLKFRAEMTKKKPHVAQSPYVFYSQR 224 Query: 235 GKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRL 292 +P R I+++ LP T H RH+F +L + D+ ++ + GH + Sbjct: 225 ----SPKFSVRGIQRMIESYSLPNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNI 280 Query: 293 STTQIY 298 +TT Y Sbjct: 281 ATTSRY 286 >gi|257451926|ref|ZP_05617225.1| integrase/recombinase [Fusobacterium sp. 3_1_5R] gi|317058477|ref|ZP_07922962.1| DNA integration/recombination/inversion protein [Fusobacterium sp. 3_1_5R] gi|313684153|gb|EFS20988.1| DNA integration/recombination/inversion protein [Fusobacterium sp. 3_1_5R] Length = 333 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 27/188 (14%) Query: 138 VDNVLLHTSHETKWI----------DARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 +DN+L +S++ K I D RN ILY LY G+R E L + +++M+ + + Sbjct: 128 LDNILKISSNDIKKIIEQFQVKSEKDYRNLMILYTLYYTGMRSDELLHMEFRHLMNREGS 187 Query: 188 --LRIQG-KGDKIRIVPLLPSVRKAILEY-------YDLCPFDLNLNIQLPLFRGIRGKP 237 L+++ K + + PL P++ + + EY Y L DL + +F K Sbjct: 188 YFLKLEKTKSGREQYKPLHPALMEKLQEYKKEMKALYQLEEEDLQNHF---VFCSHFDK- 243 Query: 238 LNPGVFQRYIRQLRRYLGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 N + R + L + LGL + + H +RH+ AT L NG DL I+ LGH T Sbjct: 244 -NKALSYRALYDLIKSLGLSIEKDMSPHNIRHAIATELSLNGADLVEIRDFLGHADTKVT 302 Query: 296 QIYTNVNS 303 +IY N S Sbjct: 303 EIYINAKS 310 >gi|149198038|ref|ZP_01875086.1| Integron integrase [Lentisphaera araneosa HTCC2155] gi|149138950|gb|EDM27355.1| Integron integrase [Lentisphaera araneosa HTCC2155] Length = 382 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 73/171 (42%), Gaps = 25/171 (14%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY--- 214 ++ +LYGCGLR E L +I + +R+ K++ V LP + L+ + Sbjct: 203 VMVKMLYGCGLRSGELYKLRVGDIDFSEEVIRVVDGSGKVKRVNFLPIILHKELKNHLKW 262 Query: 215 --DLCPFDLNLNIQ-----------LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 +L D L + L L R +G L F R LRR L Sbjct: 263 VKELYENDYKLGVADDWSTYYLFPALDLHRNQQGLKLQRKCFSD--RILRRKFSQVLDEM 320 Query: 262 AH-------TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 H + R SFA H L GGD+R++Q +LGH ++ T IY ++ N Sbjct: 321 GHKGVFKLASFRDSFAVHYLEGGGDIRTLQKLLGHQKVGQTMIYNDLTQLN 371 >gi|83722819|gb|ABC41681.1| integrase [uncultured bacterium] Length = 163 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 32/45 (71%), Positives = 37/45 (82%), Gaps = 2/45 (4%) Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 PLS AHTLRHSFATHLL G DLR+IQ +LGH ++TTQIYT+V Sbjct: 120 PLS--AHTLRHSFATHLLEAGHDLRTIQELLGHKDIATTQIYTHV 162 >gi|160945174|ref|ZP_02092400.1| hypothetical protein FAEPRAM212_02693 [Faecalibacterium prausnitzii M21/2] gi|158442905|gb|EDP19910.1| hypothetical protein FAEPRAM212_02693 [Faecalibacterium prausnitzii M21/2] Length = 402 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 78/313 (24%), Positives = 138/313 (44%), Gaps = 52/313 (16%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFL-----------------------AFYTEEK 57 +++ LE+ G S T SY CD R F F+ AF+ Sbjct: 26 YVRYLEVIAGKSANTAFSYYCDLRSFSRFMKRRRGLVATDAEFKEIDPKGLDTAFWG--S 83 Query: 58 ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNM 116 IT + I + Y F+++ K S R L+ + F YL + +E + Sbjct: 84 ITKEDIYEYLY-----FLNRECGNK--KSSTARRLASLHGFYDYLVNQVNRLSEDPTAAI 136 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 R K+ LP+ L +Q+++L L ++ R+ ++ L CG+R++E + + Sbjct: 137 RPPKQDKVLPKYLTAEQSISL-----LESTQTQSDFPERDYCMVVLFLNCGMRLAELVGM 191 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-------DLCPFDLNLNIQLPL 229 +I +Q +R+ GKG K R+V L + +A+ Y L P + + I Sbjct: 192 DLGDIDLEQRQIRLFGKGHKERMVYLNNACVEALQLYLRKRNTMEGLSPKEKAVFITR-- 249 Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG-DLRSIQSILG 288 +R + ++ ++ I + GL +T H LRH+ AT + G D+ +++ +LG Sbjct: 250 ---MRKERISNRRVEQLISGAMKAAGLKGFST-HKLRHTAATLMYQTGNVDILTLKQLLG 305 Query: 289 HFRLSTTQIYTNV 301 H + TTQIYT++ Sbjct: 306 HSSVGTTQIYTHL 318 >gi|134288322|ref|YP_001110485.1| phage integrase family protein [Burkholderia vietnamiensis G4] gi|134132972|gb|ABO59682.1| phage integrase family protein [Burkholderia vietnamiensis G4] Length = 576 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 78/306 (25%), Positives = 127/306 (41%), Gaps = 47/306 (15%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 +E+ R LS LT + D + FL T I +R S + R F + Sbjct: 266 VELGRALSSLTTE----DAIAYRTFLRHPTPRDRWIGPVRPRSSPDWRPF-----NGNLS 316 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT-----LVD 139 RS+ +LS I + ++L +++ + ++ ++ SN P AL+ A T LV Sbjct: 317 ARSVAHALSIIGALFRWLVEQRYVLANPFAGIK-VRGSN--PTALDASHAFTDGEWALVR 373 Query: 140 NVLLHTSHETKWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDD---QSTLRIQGK 193 + W + +LL Y GLR SE + T + D LR+ GK Sbjct: 374 AIADGLEWSNGWAIPAAQRLRFLLDFGYATGLRASELVGATLGGVETDARGDHWLRVNGK 433 Query: 194 GDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGI---RGKPLNPGVFQRYI 247 G K+ V L P +A+ Y L ++ + P+ + RG ++ R Sbjct: 434 GKKLARVALPPLAWEALARYLAERGLPVVPVHWQPKTPIIGSLDTDRGTAISS---VRLW 490 Query: 248 RQLRRYLGL----------PLS-----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 +RR+ L PL+ + H +RH+ ATH L +G +L +++ L H + Sbjct: 491 MIMRRFFLLSADSIEADHAPLADKLRRASPHWMRHTHATHALGSGAELTAVRDNLRHASV 550 Query: 293 STTQIY 298 STT IY Sbjct: 551 STTSIY 556 >gi|153853140|ref|ZP_01994549.1| hypothetical protein DORLON_00534 [Dorea longicatena DSM 13814] gi|149753926|gb|EDM63857.1| hypothetical protein DORLON_00534 [Dorea longicatena DSM 13814] Length = 366 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 69/287 (24%), Positives = 118/287 (41%), Gaps = 31/287 (10%) Query: 38 SYECDTRQFLIFL-------AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI------- 83 +Y D R F FL YT ++ T Q + L +I ++ + K Sbjct: 60 NYAYDIRVFFHFLMENNPVYKNYTIDRFTPQDLENLEPVDIEEYLEYLKVYKRDEDGELI 119 Query: 84 --GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 G++ L R +S ++SF Y K +I ++ L + K + L+ + L+D V Sbjct: 120 TNGEKGLARKMSALRSFYGYYFKHRIIQKNPTLLVDMPKLHDKAIIRLDTDEVALLLDFV 179 Query: 142 LLHTSHET-------KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 H T K R+ AIL LL G G+R+SE + L +++ + + + KG Sbjct: 180 ESAGEHLTGQALNYYKKTRDRDIAILTLLLGTGIRVSECVGLDIKDVDFKNNGIMVTRKG 239 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQ 249 +V V +A+ Y D LP LF + K + + +++ Sbjct: 240 GNQMVVYFGDEVAEALKNY---MAGDREAATPLPGHEQALFLSTQRKRMGVQAVENMVKK 296 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 R + T H LR ++ T L GD+ + +LGH ++TT+ Sbjct: 297 YARQVTPNKKITPHKLRSTYGTSLYKETGDIYLVADVLGHKDVNTTK 343 >gi|18310077|ref|NP_562011.1| integrase/recombinase [Clostridium perfringens str. 13] gi|18144756|dbj|BAB80801.1| probable integrase/recombinase [Clostridium perfringens str. 13] Length = 338 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 76/310 (24%), Positives = 137/310 (44%), Gaps = 37/310 (11%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL-----AFYTEEKITIQTIR--- 64 ELL ++++ + + R L + T+++YE R FL Y E+ + + IR Sbjct: 11 ELLDILEDYMTDCKY-RDLRRTTIRAYEQSLRLLFKFLEDDYKVIYVED-VKEEHIRNYI 68 Query: 65 -------QLSYTEIRAFISKRRTQKIGDRSLKRSLS-------GIKSFLKYLKKRKITTE 110 + SY I+ Q GD K SL IK F + K K+ ++ Sbjct: 69 DFTKERGKYSYVANENNINSNVPQNRGDFGKKVSLCTLDNYLGNIKMFFTWCKDNKLISK 128 Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVD-NVLLHTSHETKWIDARNSAILYLLYGCGLR 169 ++ +K S K +T+ + N LL + T + + R+ ++ LL G+R Sbjct: 129 DPSFKIKRIKYSRK------AKAEITIDEFNKLLKSLDLTLFSEYRDYIVIQLLMDTGMR 182 Query: 170 ISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226 + E L L ++I T+ I G KG + R V ++++ + ++ + + N Sbjct: 183 VGECLELREEDIDIRNKTIFISGEIAKGRRDRYVFFSNTMQRMLQKWLNYKDRYVESNY- 241 Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286 +F RG F++++R + + T HTLR++FA L +GGD+ ++ + Sbjct: 242 --IFVTNRGGKYQVHSFEKHMRNYLKKAKIDKQITPHTLRNNFAKRFLMSGGDIYTLSRL 299 Query: 287 LGHFRLSTTQ 296 LGH + TTQ Sbjct: 300 LGHSDIRTTQ 309 >gi|197336531|ref|YP_002157554.1| phage integrase, putative [Vibrio fischeri MJ11] gi|197315234|gb|ACH64682.1| phage integrase, putative [Vibrio fischeri MJ11] Length = 323 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 54/160 (33%), Positives = 72/160 (45%), Gaps = 9/160 (5%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAI 210 D RN+AI LL GCGLR SE ++L ++ DDQ +R GKG R VP+ S + Sbjct: 149 DIRNNAIFALLVGCGLRCSELMTLQIDALVYKDDQHWVRFFGKGHVERCVPINDSTLPYL 208 Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGK-----PLNP-GVFQRYIRQLRRYLGLPLSTTAHT 264 E+ + +L L R RG P+ R ++ LG + H Sbjct: 209 EEWVQIRK-ELKLTSTTLFIRTRRGNTFVDHPIKARSSIYRLVQSRCLALGAKFMVSPHD 267 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 LR + AT L G + IQ ILGH TTQ Y + K Sbjct: 268 LRRTTATILYHAGVRISVIQDILGHADEKTTQRYIQKDEK 307 >gi|17158102|ref|NP_478098.1| IntIdelta1 protein [Corynebacterium glutamicum] gi|17059621|emb|CAD12229.1| IntIdelta1 protein [Corynebacterium glutamicum] Length = 387 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 82/182 (45%), Gaps = 37/182 (20%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207 LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198 Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 +A + F + + P +R + FQ Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 R ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT + + + Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTALLQRLAAV 318 Query: 305 NG 306 G Sbjct: 319 RG 320 >gi|89147394|gb|ABD62557.1| integrase [uncultured bacterium] Length = 163 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 29/60 (48%), Positives = 41/60 (68%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 Q+ +R R G+ + + H+LRHSFATHLL G D+R+IQ ++GH +STT IYT+V Sbjct: 103 ALQKAVRAAIRAAGITKTGSCHSLRHSFATHLLEAGYDIRTIQELMGHADVSTTMIYTHV 162 >gi|159038073|ref|YP_001537326.1| integrase family protein [Salinispora arenicola CNS-205] gi|157916908|gb|ABV98335.1| integrase family protein [Salinispora arenicola CNS-205] Length = 332 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 68/281 (24%), Positives = 119/281 (42%), Gaps = 18/281 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE-IRAFISK 77 + WL N R LS T +Y D +L + A + + + +Y + + + Sbjct: 27 EAWLGN----RRLSDHTRDAYRRDVAGWLGWCAGADLDPLQATFLHVNAYARTLESTPTA 82 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNSLPRALNEKQAL 135 R + + ++ R LS + S+ +L K + + + + ++ + +S L ++ Sbjct: 83 RSGKPLTPATVARKLSALSSWYDFLVKLRAVGVNPVTGADRPHVDRDHSATVGLTPEE-- 140 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL--TPQNIMDDQSTLRIQGK 193 V+ +L+ + ARN A + LL GLR+ E +SL T + ++R GK Sbjct: 141 --VNAMLVVADTASGPTAARNRAAVALLADLGLRVGELVSLDITDLGVERGHHSVRFAGK 198 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNL---NIQLPLFRGIRGKPLNPGVFQRYIRQL 250 G + R L P A+ Y + + PL G L+ R +R+L Sbjct: 199 GGRARRRALTPHTSSAVHAYLTQRAGAAGVPTHRLTGPLLVTSTGARLDRHSVFRLVRRL 258 Query: 251 RRYLGLP--LSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289 R G+P + H+LRHSFAT + G L +Q +GH Sbjct: 259 ARAAGIPGWARLSPHSLRHSFATTARAEGVPLEDVQDAMGH 299 >gi|89147367|gb|ABD62544.1| integrase [uncultured bacterium] Length = 163 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 30/64 (46%), Positives = 44/64 (68%) Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L+ V Q+ +++ R G+ + + HT RHSFATHLL NG D+R++Q +LGH + TT I Sbjct: 99 LSDDVIQKAVKKAIRGAGILKNGSCHTFRHSFATHLLENGYDIRTVQELLGHKDVRTTMI 158 Query: 298 YTNV 301 YT+V Sbjct: 159 YTHV 162 >gi|310643234|ref|YP_003947992.1| integrase family protein [Paenibacillus polymyxa SC2] gi|309248184|gb|ADO57751.1| Integrase family protein [Paenibacillus polymyxa SC2] Length = 145 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 50/135 (37%), Positives = 68/135 (50%), Gaps = 19/135 (14%) Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIR-GKPLNPGVFQRY 246 QGKG K R LL A++E Y + + P LF G R G+ L Q+ Sbjct: 20 QGKGRKDRQT-LLSEAAFAVVEQY--------IGWEQPADWLFPGQREGRHLTERSAQKV 70 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 + G+ + H+LRHSFATHLL NG DLR IQ +LGH + TT+ T+V+ ++ Sbjct: 71 FEKALAEAGIRKQVSIHSLRHSFATHLLENGIDLRYIQELLGHQSVRTTERCTHVSRRDI 130 Query: 307 G------DWMMEIYD 315 G D M E+ D Sbjct: 131 GRIQSPLDRMSELED 145 >gi|227461216|gb|ACP39552.1| putative integron integrase [uncultured microorganism] Length = 311 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 30/58 (51%), Positives = 40/58 (68%) Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 QR +RQ R G+ + HTLRHSFATHLL +G D+R++Q +LGH + TT IYT+ Sbjct: 254 LQRALRQAVRGAGIIKPASVHTLRHSFATHLLESGYDIRTVQELLGHADVKTTMIYTH 311 >gi|149374827|ref|ZP_01892600.1| resolvase [Marinobacter algicola DG893] gi|149360716|gb|EDM49167.1| resolvase [Marinobacter algicola DG893] Length = 246 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 94/205 (45%), Gaps = 28/205 (13%) Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178 L+ +++P+ L + + LTL++ H H IL L++ G R+SE L++T Sbjct: 51 LETLDTMPKYLLKPEVLTLLE-AETHPMHR---------LILDLMWCTGARVSEVLAITS 100 Query: 179 QNIMDDQSTLRI------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232 + DD + QG G P S++++ + + D IQ L+ G Sbjct: 101 ASFHDDGYDFGVILKTLKQGAGR-----PSKRSLQRSPKRFIPILDRDFQTRIQSYLWMG 155 Query: 233 IRGK-----PLNPGVFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285 K P+ I +L +G P HT RHSFA HLL +G L+ + Sbjct: 156 KFRKDERIFPITRQAVSANIDRLIEQVGGDPPFKIGCHTFRHSFAVHLLLHGRPLKFVSQ 215 Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWM 310 +LGH + +T++YTNV + +G ++ Sbjct: 216 LLGHRSVESTEVYTNVLTFDGAHFL 240 >gi|89147669|gb|ABD62693.1| integrase [uncultured bacterium] Length = 163 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 43/69 (62%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 +R ++ QR +R R G+ + HT RHSFATHL+ +G D+R++Q +LGH + Sbjct: 94 VRRHHVDEQALQRAVRSAVRVAGIKRPGSCHTFRHSFATHLIEDGYDIRTVQELLGHKDV 153 Query: 293 STTQIYTNV 301 TT IYT+V Sbjct: 154 KTTMIYTHV 162 >gi|74317233|ref|YP_314973.1| integron integrase [Thiobacillus denitrificans ATCC 25259] gi|74056728|gb|AAZ97168.1| integron integrase [Thiobacillus denitrificans ATCC 25259] Length = 326 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 88/320 (27%), Positives = 138/320 (43%), Gaps = 68/320 (21%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 R S T QSY R++++F +K + ++ E+R F+S ++ S Sbjct: 24 RHYSLRTEQSYVDWARRYILF-----HQK---RHPAEMGAAEVREFLSHLAVERNVSAST 75 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQALTLVDNVLLHTSH 147 + KS L +L + + E L+ + KS LP L + + L++ Sbjct: 76 QNQ---AKSALLFLYREVLKIELPWLDEVVVAKSAKRLPVVLTQVEVRALLNA------- 125 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKG--DKIRIVP--- 201 + + LLYG G+R+ E L L +++ + + + +GKG D++ ++P Sbjct: 126 ----MSGTMGLVASLLYGTGMRLLEGLRLRVKDVEFSRREIIVREGKGNKDRVTVLPENL 181 Query: 202 LLPSVRKAILEYY-DLCPFDLNLN---IQLPLFRGIRGKPLNPG-------VFQRYIRQL 250 +LP KA LE L DL + LP + K N VF +R + Sbjct: 182 ILPL--KAHLEKVRTLHERDLEAGYGAVYLP--DALAAKYPNAARAWGWQYVFPSPVRAV 237 Query: 251 -------RRY-----------------LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286 RR+ GL T H LRHSFATHLL G D+R++Q + Sbjct: 238 DPRSGVERRHHVYETSVQRAVREAARAAGLHKPVTPHVLRHSFATHLLQAGYDIRTVQEL 297 Query: 287 LGHFRLSTTQIYTNVNSKNG 306 LGH +STT IYT+V +K G Sbjct: 298 LGHKDVSTTMIYTHVLNKGG 317 >gi|291551222|emb|CBL27484.1| Site-specific recombinase XerD [Ruminococcus torques L2-14] Length = 327 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 69/294 (23%), Positives = 132/294 (44%), Gaps = 37/294 (12%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI--- 75 +++L IE G S+ TL+ Y + L + ++I+ + +IR ++ Sbjct: 54 ESFLSAKRIE-GCSEKTLKYYNATIQSMLDGIG---------KSIKYIVTDDIRCYLTEY 103 Query: 76 -SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 +K+++ K+ +++R LS SF +L+ +S + + +K ++ +++ Sbjct: 104 QAKKKSSKVTIDNIRRILS---SFFSWLEDEDYILKSPVRRIHKVKTGTNIKETYSDEAL 160 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 + DN + R+ A++ +L G+R+ E + L ++I ++ + GKG Sbjct: 161 ELMRDNC----------TELRDLAMIDMLASTGMRVGEMVLLNREDIDFNERECVVFGKG 210 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 DK RIV + + Y + D L +++Q P R +N G + +RQL Sbjct: 211 DKERIVYFDARTKIHLQNYLNSRKDDNPALFVSLQSPHNR------MNIGGIEVRLRQLG 264 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + LGL H R + AT + G + +Q +LGH R+ TT Y V N Sbjct: 265 KRLGLN-KVHPHKFRRTLATMAIDKGMPIEQLQQLLGHRRIDTTLQYAMVKQSN 317 >gi|89147353|gb|ABD62537.1| integrase [uncultured bacterium] Length = 163 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 43/69 (62%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 +R ++ QR ++ R + + T HT RHSFATHLL NG D+R++Q +LGH + Sbjct: 94 MRRHHVDEKSLQRAVKGAVRAARIDKTATCHTFRHSFATHLLKNGHDIRTVQELLGHKDV 153 Query: 293 STTQIYTNV 301 TT IYT+V Sbjct: 154 RTTMIYTHV 162 >gi|221636287|ref|YP_002524163.1| tyrosine recombinase [Thermomicrobium roseum DSM 5159] gi|221157480|gb|ACM06598.1| tyrosine recombinase [Thermomicrobium roseum DSM 5159] Length = 334 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 10/159 (6%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDL 216 A++ L+ G+R+SE +L Q+I + T RI + KG K R V +A+ Y+ Sbjct: 159 ALILFLFRTGVRVSELCALRRQDIDLETGTARIYRAKGGKSRTVHFDSETAEALAAYWR- 217 Query: 217 CPFDLNLNI-QLPLFRGIRGKPLNPG------VFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 D + P F G R +P PG Q + +L G+ + T H+ RH Sbjct: 218 ARGDSGRGVNAFPAFSG-RDRPGQPGKAIAPRTVQALVSRLSEEAGVEFAVTPHSFRHGL 276 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 AT L+ ++Q+ILGH TT+IY ++ ++ + Sbjct: 277 ATELVRRRVRESTVQTILGHASPVTTRIYVHLTAQEAAE 315 >gi|296392530|ref|YP_003657414.1| integrase family protein [Segniliparus rotundus DSM 44985] gi|296179677|gb|ADG96583.1| integrase family protein [Segniliparus rotundus DSM 44985] Length = 349 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 63/238 (26%), Positives = 114/238 (47%), Gaps = 24/238 (10%) Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 Q S ++ +++++ + +G SL +K++ K+L+ + T+ ++ + ++ + Sbjct: 107 QASALDVARWLAQQSS--LGQSSLATYSQYLKAWFKWLQVHEHRTDDPMVKVGTVRYPDR 164 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG-CGLRISEALSLTPQNIMD 183 PR ++++ L++ V + + + ++ LLY GLR E L ++I+D Sbjct: 165 APRPVSDRDLARLLETV-----------NRKRTRLMVLLYCLAGLRAFEIAKLRGEDIVD 213 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 +R+ GKG+K R+VPL P + +AI + + + P I GK V Sbjct: 214 G-VFVRVLGKGNKERLVPLHP-ILQAIAPTMPERGWWFPRDSRWPGMH-ISGK----SVS 266 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 Q +RR + T H LRH T LL G D+R +Q I+ H +STT YT V Sbjct: 267 QTISLTMRRA---GVRATPHQLRHWQGTTLLDEGVDIRVVQEIMRHASISTTAQYTQV 321 >gi|257467272|ref|ZP_05631583.1| integrase/recombinase [Fusobacterium gonidiaformans ATCC 25563] gi|315918401|ref|ZP_07914641.1| DNA integration/recombination/inversion protein [Fusobacterium gonidiaformans ATCC 25563] gi|313692276|gb|EFS29111.1| DNA integration/recombination/inversion protein [Fusobacterium gonidiaformans ATCC 25563] Length = 333 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/188 (29%), Positives = 90/188 (47%), Gaps = 27/188 (14%) Query: 138 VDNVLLHTSHETKWI----------DARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 +DN+L +S++ K I D RN ILY LY G+R E L + +++M+ + + Sbjct: 128 LDNILKISSNDIKKIIEQFQVKNEKDYRNLMILYTLYYTGMRSDELLHMEFRHLMNREGS 187 Query: 188 --LRIQG-KGDKIRIVPLLPSVRKAILEY-------YDLCPFDLNLNIQLPLFRGIRGKP 237 L+++ K + + PL P++ + + EY Y L DL + +F K Sbjct: 188 YFLKLEKTKSGREQYKPLHPALMEKLQEYKKEMKALYQLEEEDLQNHF---VFCSHFDK- 243 Query: 238 LNPGVFQRYIRQLRRYLGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 N + R + L + LGL + + H +RH+ AT L NG DL I+ LGH T Sbjct: 244 -NKALSYRALYDLIKSLGLSIEKEMSPHNIRHAIATELSLNGADLVEIRDFLGHADTKVT 302 Query: 296 QIYTNVNS 303 ++Y N S Sbjct: 303 EVYINAKS 310 >gi|238924066|ref|YP_002937582.1| phage integrase family protein [Eubacterium rectale ATCC 33656] gi|238875741|gb|ACR75448.1| phage integrase family protein [Eubacterium rectale ATCC 33656] gi|291528878|emb|CBK94464.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] Length = 349 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 66/299 (22%), Positives = 130/299 (43%), Gaps = 42/299 (14%) Query: 12 FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71 FE +K L+ +I L Q D ++L +L +Y ++ + Sbjct: 56 FEYMKSANPSLKKYDIRDYPISLLDQISPSDIEEYLFYLKYYEKDGVV------------ 103 Query: 72 RAFISKRRTQKIGDRSLKRSLSGIKSFLK-YLKKRKITTE-SNILNMRNLKKSNSLPRAL 129 +R +KR L+ +++F Y +K I T ++ + + + + N + L Sbjct: 104 ---------HTNDERGIKRKLASLRTFYNFYFRKEFIDTNPASKVTLPKIHEKNII--RL 152 Query: 130 NEKQALTLVDNVLLHTS--------HETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 + + L+D V S HE + R+ A++ LL G G+R+SE + L ++ Sbjct: 153 DTDEVAQLLDEVESGDSLSKNQQRFHEKTKV--RDLALMTLLLGTGIRVSECVGLDMDDV 210 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKP 237 + +++ KG IV VR A+L Y++ + P + + N LF ++ K Sbjct: 211 DFKNNGIKVHRKGGADVIVYFGDEVRDALLSYWEERSIITPAEGHAN---ALFLSLQRKR 267 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 ++ + +++ R + + T H LR ++ T L GD+ + +LGH ++TT+ Sbjct: 268 ISVRSVENLVKKYSRLVTTVKNITPHKLRSTYGTTLYQETGDIYLVADVLGHKDVNTTR 326 >gi|163752268|ref|ZP_02159468.1| transposase [Shewanella benthica KT99] gi|161327851|gb|EDP99031.1| transposase [Shewanella benthica KT99] Length = 506 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/111 (39%), Positives = 62/111 (55%), Gaps = 9/111 (8%) Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP---LNPGVFQRYIR 248 KG K R VPL P L YY + + + + LF G GKP ++ G Q+ ++ Sbjct: 9 AKGGKDRFVPL-PKRTLQALRYY----WQTHHHPRF-LFPGKDGKPDSLIDKGGIQKALK 62 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 ++ + S + H LRHS+ATHLL G DLRS+Q++LGH L+TT YT Sbjct: 63 RVIGECNIHKSISPHNLRHSYATHLLEQGLDLRSVQTLLGHNSLNTTARYT 113 >gi|312884536|ref|ZP_07744240.1| phage integrase family site specific recombinase [Vibrio caribbenthicus ATCC BAA-2122] gi|309367848|gb|EFP95396.1| phage integrase family site specific recombinase [Vibrio caribbenthicus ATCC BAA-2122] Length = 327 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 80/313 (25%), Positives = 132/313 (42%), Gaps = 53/313 (16%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGD 85 IE + ++ Y T + I+ Y ++ + + TE+ A++S Q + Sbjct: 6 IEEIRRHMRMRGYSLKTEKAYIYWIKYFIRFNKLKHPQDMGTTEVTAYLSYLANEQHVAI 65 Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 + K +L+ I +R + L KK +P L + V +L H Sbjct: 66 NTQKVALNAIAFLYNQFLQRPLGD----LGFTYAKKQRKVPSVLTPNE----VQLILSHL 117 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIV---- 200 S N +I LLYG GLR++E L + Q++ +L ++ GKG K R+ Sbjct: 118 S-------GVNHSIFSLLYGSGLRVNECLRIRVQDLDLQNLSLTVRDGKGKKDRVTLLSP 170 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNI--QLPLFRG--------------------IRGKPL 238 L+ S++ I + + D+ I LP G I PL Sbjct: 171 TLIDSLQLQIQKASKIQEEDIKQGIGPSLPHALGKKYPNAFKQIAWMFIFPSLSICRHPL 230 Query: 239 NPGVFQRYI------RQLRRYLG----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288 + + ++ + L+R + T HT RHSFAT LL +G D+R++Q +LG Sbjct: 231 TNKLCRHHLHDSAPRKALKRAVQQAKIFNKRITCHTFRHSFATELLRSGQDIRTVQELLG 290 Query: 289 HFRLSTTQIYTNV 301 H ++TTQIYT+V Sbjct: 291 HSDVATTQIYTHV 303 >gi|295114677|emb|CBL35524.1| Site-specific recombinase XerD [butyrate-producing bacterium SM4/1] Length = 345 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 70/290 (24%), Positives = 124/290 (42%), Gaps = 17/290 (5%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDR 86 +R S T+++Y Q L ++A + + T + Y + A++ +K +G Sbjct: 24 QRHASSNTVKAYRTAWNQLLKYIAGQKKIPMMSVTFGMIRYEMVVAYLDWLSEEKGVGPA 83 Query: 87 SLKRSLSGIKSFLKY---LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 + L+ I++F+ Y + I+ S + ++ KK + A V + Sbjct: 84 TRNNRLAAIRAFITYASACRPEYISLSSELAAIKIQKKKRFREVDYMSEDA---VKALFA 140 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPL 202 TK + R+ ++ LY G RI EAL + ++ +D T+ + GKG KIR+VPL Sbjct: 141 APDTRTK-MGLRDQFLMIFLYDTGARIQEALDVKICDLRIDKTPTVTLHGKGGKIRVVPL 199 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLF----RGIRGKPLNPGV---FQRYIRQLRRYL- 254 + + + Y + ++ LF +G R + Q+Y R Sbjct: 200 MKDTVQHLDNYMGVFHKGESVFSTEWLFYVERKGSRSAMCDDTARLRIQKYAELARENCP 259 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 +P H RH+ A HL +G DL I LGH ++ TT IY +++ Sbjct: 260 DVPERVHPHLWRHTRAMHLYQHGMDLTMISQWLGHKQVETTLIYAYADTE 309 >gi|149913599|ref|ZP_01902132.1| Integrase [Roseobacter sp. AzwK-3b] gi|149812719|gb|EDM72548.1| Integrase [Roseobacter sp. AzwK-3b] Length = 196 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 13/158 (8%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-------IQGKGDKIRIVPLLPSVR 207 R+ I+ + GLR E +L ++ D+ +R +Q KG K R V L +R Sbjct: 35 RDETIVLFSFYAGLRAKEIAALKRGDVFDEAGAVREQFILSAVQSKGGKTRTVYLNQRLR 94 Query: 208 KAILEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 +A+ EY LNL + PLF +G + + + R +GL ++H+ R Sbjct: 95 RALAEY----AAGLNLSDPNRPLFESQKGGHFSANTMCQLFLDIYRAVGLK-DASSHSGR 149 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 ++ T L + G +R + + GH +STTQ Y +VNS+ Sbjct: 150 RTYITRLANKGVGVRLLAELAGHSHISTTQRYIDVNSE 187 >gi|318606029|emb|CBY27527.1| integrase [Yersinia enterocolitica subsp. palearctica Y11] Length = 314 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 84/189 (44%), Gaps = 30/189 (15%) Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172 ++N+R + LN+ Q +L+D LH + E + I+ L G R +E Sbjct: 120 LMNIREFDQPEREMAWLNDDQIDSLLDACDLHGNPEL-------TLIVRLCLSTGARWNE 172 Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232 + I ++ T I KG K R VPL + +A+ Sbjct: 173 IAKIKASQISPNKITF-INTKGKKNRTVPLSEDIYQALA--------------------A 211 Query: 233 IRGKPLNPGVFQRYIRQLR-RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291 +GKP P ++++ R +R + LP+ H LRH+FA+H + GG++ +Q ILGH Sbjct: 212 RKGKPFEP-CYKQFYRVIRLAQIELPVGQMTHVLRHTFASHFMMAGGNIIVLQRILGHSD 270 Query: 292 LSTTQIYTN 300 + T Y++ Sbjct: 271 IRVTMRYSH 279 >gi|225353239|gb|ACN88324.1| integrase [Riemerella anatipestifer] Length = 284 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 73/298 (24%), Positives = 121/298 (40%), Gaps = 58/298 (19%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 8 TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 57 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 58 LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 106 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207 + LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 107 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 166 Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +A + F + + P +R Sbjct: 167 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 226 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 + FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT Sbjct: 227 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTT 284 >gi|77734449|emb|CAJ26231.1| integerase-recombinase [Thermotoga petrophila RKU-1] Length = 190 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 19/133 (14%) Query: 158 AILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 AI +L G+R+SE ++L+ +I +++ + +RI+GKG+K RI+ + ++ + E + Sbjct: 76 AIFKVLANTGMRVSEIVNLSVHDISVNETARIRIKGKGNKERIIXI---SKELVEELMNS 132 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 F+ + P R I QR +++ R G+ T H RHSFA L+ Sbjct: 133 GFFE-----KKPSVRSI----------QRAVKRYARKAGIKKKVTPHIFRHSFAVALIER 177 Query: 277 GGDLRSIQSILGH 289 G L IQ++LGH Sbjct: 178 GVPLNKIQALLGH 190 >gi|85707507|ref|ZP_01038583.1| putative integrase/recombinase [Roseovarius sp. 217] gi|85667964|gb|EAQ22849.1| putative integrase/recombinase [Roseovarius sp. 217] Length = 313 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 69/292 (23%), Positives = 130/292 (44%), Gaps = 26/292 (8%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI-GDR 86 +RG S + ++Y + F A + +I QL I AF+ T + G Sbjct: 19 QRGFSAHSSETYAHAFKLLFQFAARRVGSSPSQLSIEQLDAPLILAFLDHLETDRGNGAT 78 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPRALNEKQALTLVDNVLL 143 S L+ IKSF+++++ + + + +R + + N L + L++ + +L Sbjct: 79 SRNARLAAIKSFMRFVEYQYPALLAQVAQIRAIPTKRCENKLVQHLSKDEV-----QAVL 133 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLRIQGKGDKIRIVPL 202 + T + AR+ A+++L + GLR+SE + +++ Q+ +L ++GKG K R PL Sbjct: 134 NAPDVTTRLGARDRAMMHLCFAGGLRVSELVGAALTDLVLGQAPSLLVRGKGRKHRHFPL 193 Query: 203 ---LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ----RYIRQLRRYLG 255 S +A L L P +F G+ + F+ +++ + ++ Sbjct: 194 WKQTASDLRAWLAVRGLTPAP-------EIFVNAEGRAMTRSGFEYVLDKHVVKASQHCP 246 Query: 256 --LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 S + H LRHS A +L D+R + LGH + TT+ Y V++ Sbjct: 247 SLAGRSVSPHQLRHSCAVIMLEATRDIRKVALWLGHADIRTTETYLRVDAAQ 298 >gi|89147458|gb|ABD62589.1| integrase [uncultured bacterium] Length = 164 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 39/61 (63%) Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 G ++++ G+ TAH LRHS+ATHLL G DLR+IQ LGH + TT+IYT+ Sbjct: 103 GAVSKWLKNAVGKAGIEKRVTAHVLRHSYATHLLQKGVDLRTIQEALGHSSVKTTEIYTH 162 Query: 301 V 301 V Sbjct: 163 V 163 >gi|257125272|ref|YP_003163386.1| integrase [Leptotrichia buccalis C-1013-b] gi|257049211|gb|ACV38395.1| integrase domain protein SAM domain protein [Leptotrichia buccalis C-1013-b] Length = 284 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 71/285 (24%), Positives = 127/285 (44%), Gaps = 23/285 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +N+L+ L+ E+ S+ TL Y D QF +F+ + ++ EI ++I Sbjct: 4 KNFLEFLKFEKRSSQNTLNGYNRDLTQFFLFVK---------KDFSEIGEKEISSYID-N 53 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 +K+ S+ R +S +K+F K+ K+ T+ ++NLK+ P L ++ +V Sbjct: 54 LNKKLRKNSVLRKVSVLKTFYKFCYLNKLITKDPAGIIKNLKREYQPPETLTLEEIKQIV 113 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-QSTLRIQGKGDKI 197 DN + +N I+ LL G ISE L+L ++I + ++ GK K Sbjct: 114 DNCPNTPAG------IQNRLIIKLLIVTGAMISEILNLKIKDIENQYDKFIKTLGKNSKY 167 Query: 198 RIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +I + S I Y ++ P N N L +F IR + F + ++ + + + Sbjct: 168 QIKLIDNSFEIEIKNYLEIYRPKLKNANESLKIFPDIRREK-----FWKNLKIIAQNAKI 222 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + H R+S L D+ IQ +LG ++T +I NV Sbjct: 223 EKNVYPHIFRNSLVGILSEANADICIIQEVLGKVNITTAKIKKNV 267 >gi|229170806|ref|ZP_04298420.1| Integrase-recombinase [Bacillus cereus AH621] gi|228612644|gb|EEK69853.1| Integrase-recombinase [Bacillus cereus AH621] Length = 314 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/153 (31%), Positives = 70/153 (45%), Gaps = 10/153 (6%) Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 N AIL L G RI E + +++ D + LR++GKGDK+R + + + + I E Sbjct: 142 NYAILLALASTGARIQELCTARVKDLHYDGKYWLRVKGKGDKVRELFIPEYLYQCISEMR 201 Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266 F L+ + PLF RG NP + + + L TAHT R Sbjct: 202 RRRGFQTILDRGDECPLFVNQRGNFYNPKTLSNQVTDMIKKTNLDFLKYRENPVTAHTFR 261 Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298 H+FA + G DL + LGH + TT+IY Sbjct: 262 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 294 >gi|94499085|ref|ZP_01305623.1| site-specific recombinase, phage integrase family protein [Oceanobacter sp. RED65] gi|94428717|gb|EAT13689.1| site-specific recombinase, phage integrase family protein [Oceanobacter sp. RED65] Length = 319 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 99/221 (44%), Gaps = 52/221 (23%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 ++ LP+ L +++ +++ + R+ I+ L+YG GLRISE L L + Sbjct: 97 QRQRRLPQVLTQQEVKRIINE-----------LGERDRLIVSLMYGSGLRISECLRLRVK 145 Query: 180 NIMDDQSTLR-IQGKGDKIRIVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234 +I + +L I GKG K R L + ++ I L D NL+ P G Sbjct: 146 DIHFETGSLDVIDGKGGKDRKTILSKNIVGDLQNQIQNSIALQEKD-NLSGLGPSLPGAL 204 Query: 235 GKPLNPGVFQR--------------------YIRQ------LRRYLGLPLST-------- 260 G+ L P +++ + R +R+ L + Sbjct: 205 GRKL-PNAYRQPAWMFVFPSTTICKHPITGIHCRHHLHETVMRKALAKACKSAGIYNKRI 263 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T HT RHSFAT LL G D+R++Q +LGH +STTQIYT+V Sbjct: 264 TCHTFRHSFATELLRAGRDIRTVQELLGHKDVSTTQIYTHV 304 >gi|89147498|gb|ABD62609.1| integrase [uncultured bacterium] Length = 163 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 30/59 (50%), Positives = 39/59 (66%) Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 QR ++ G+ T HTLRHSFATHLL G D+R++Q +LGH +STT IYT+V Sbjct: 104 LQRRVKLAAEEAGIVKRVTCHTLRHSFATHLLEGGYDIRTVQELLGHADVSTTMIYTHV 162 >gi|156937341|ref|YP_001435137.1| phage integrase family protein [Ignicoccus hospitalis KIN4/I] gi|156566325|gb|ABU81730.1| phage integrase family protein [Ignicoccus hospitalis KIN4/I] Length = 604 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 72/283 (25%), Positives = 126/283 (44%), Gaps = 33/283 (11%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L+ +E+ G +K TL+SY + FL + + + ++ Y + ++ KR Sbjct: 19 EEYLEFMEVS-GANKKTLKSYRSALKDFLSV--------VGDKRVGEVKYEDYVKWVRKR 69 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + RS+K+ ++ L Y N L L+ ++P+ + Sbjct: 70 MKEGF-PRSVKKDKRAQQTTLHYYS----LFVRNFLKWLGLEGLPAVPKPRKDSVEALKP 124 Query: 139 DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 + V LL ++E D + I+ LL GLR SEAL++T + + + ++GK K Sbjct: 125 EEVAALLQAAYE----DPIDFLIVSLLLETGLRASEALNVTLDKVDFRRRQIAVRGKYGK 180 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 R+V P +A+ + P R + PL+ + +++L + GL Sbjct: 181 ERVVFYGPLTEEALRRAWSYI---------APSGRLV---PLSYQALYKRLKRLAKKAGL 228 Query: 257 PLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 P H LRH+FAT L G L ++Q +LGH + TTQIY Sbjct: 229 PEHKLHPHALRHTFATEALRRGMSLPAVQRLLGHSDIKTTQIY 271 >gi|238922492|ref|YP_002936005.1| putative phage integrase/recombinase [Eubacterium rectale ATCC 33656] gi|238925709|ref|YP_002939226.1| putative phage integrase/recombinase [Eubacterium rectale ATCC 33656] gi|238874164|gb|ACR73871.1| putative phage integrase/recombinase [Eubacterium rectale ATCC 33656] gi|238877385|gb|ACR77092.1| putative phage integrase/recombinase [Eubacterium rectale ATCC 33656] gi|291525374|emb|CBK90961.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629] Length = 282 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 67/282 (23%), Positives = 127/282 (45%), Gaps = 37/282 (13%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 R L + ++ Y+ FL ++ + EE L+ ++R F+ ++ + +L Sbjct: 16 RNLKERSINCYKNYVSYFLNYMEKHPEE---------LTCQDVRDFLLAKKDNGLKATTL 66 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 S I+ F + N+L++ L ++PR + E + T+ L T Sbjct: 67 NLYNSAIRFFYR-----------NVLHV--LWDDITVPRMIIEHKLPTV-----LSTDEI 108 Query: 149 TKWIDARNS----AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + +DA + A+ +Y G+R+SE + L +I + ++ +++ +L Sbjct: 109 DRLLDATDDLKYKAMFATMYSSGMRVSEVIHLHYDDISRTNMQIHVRDTKNRMDRYTILS 168 Query: 205 SVRKAIL-EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 A+L EY+ F + G+ L ++ IR+ GL T H Sbjct: 169 ERNLALLTEYW----FRKGRPKGILFPNQFTGQYLTVSTLEQVIRRSASAAGLS-GVTPH 223 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 LRHSFATHL+ G + R+IQ++LGH +T++Y +V++K+ Sbjct: 224 CLRHSFATHLMEQGVEQRNIQALLGHRDPKSTEVYLHVSNKS 265 >gi|89147530|gb|ABD62625.1| integrase [uncultured bacterium] Length = 163 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 34/71 (47%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Query: 232 GIRGKP-LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290 GI+ + ++ QR I+Q + HTLRHSFATHLL G D+R IQ +LGH Sbjct: 92 GIKARHHVHETAIQRAIKQATYLAKINKHIGPHTLRHSFATHLLERGRDIREIQELLGHA 151 Query: 291 RLSTTQIYTNV 301 +STTQIYT+V Sbjct: 152 NVSTTQIYTHV 162 >gi|89147496|gb|ABD62608.1| integrase [uncultured bacterium] Length = 163 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 39/58 (67%) Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 QR I+ R + HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 105 QRAIKMALRKADFIKPASTHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|89147557|gb|ABD62638.1| integrase [uncultured bacterium] Length = 163 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 41/64 (64%) Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 ++ QR + + R +P + H LRHSFATHLL G D+R++Q +LGH +STT I Sbjct: 99 VHENALQRAVTEGTRVAEIPKRVSCHALRHSFATHLLEAGYDIRTVQELLGHSDVSTTMI 158 Query: 298 YTNV 301 YT+V Sbjct: 159 YTHV 162 >gi|291524801|emb|CBK90388.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629] Length = 349 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 66/299 (22%), Positives = 130/299 (43%), Gaps = 42/299 (14%) Query: 12 FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71 FE +K L+ +I L Q D ++L +L +Y ++ + Sbjct: 56 FEYMKSANPSLRKYDIRDYPISLLDQISPSDIEEYLFYLKYYEKDGVV------------ 103 Query: 72 RAFISKRRTQKIGDRSLKRSLSGIKSFLK-YLKKRKITTE-SNILNMRNLKKSNSLPRAL 129 +R +KR L+ +++F Y +K I T ++ + + + + N + L Sbjct: 104 ---------HTNDERGIKRKLASLRTFYNFYFRKEFIDTNPASKVTLPKIHEKNII--RL 152 Query: 130 NEKQALTLVDNVLLHTS--------HETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 + + L+D V S HE + R+ A++ LL G G+R+SE + L ++ Sbjct: 153 DTDEVAQLLDEVESGDSLSKNQQRFHEKTKV--RDLALMTLLLGTGIRVSECVGLDMDDV 210 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKP 237 + +++ KG IV VR A+L Y++ + P + + N LF ++ K Sbjct: 211 DFKNNGIKVHRKGGADVIVYFGDEVRDALLSYWEERSIITPAEGHAN---ALFLSLQRKR 267 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 ++ + +++ R + + T H LR ++ T L GD+ + +LGH ++TT+ Sbjct: 268 ISVRSVENLVKKYSRLVTTVKNITPHKLRSTYGTTLYQETGDIYLVADVLGHKDVNTTR 326 >gi|282878602|ref|ZP_06287378.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] gi|281299273|gb|EFA91666.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] Length = 418 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 84/318 (26%), Positives = 144/318 (45%), Gaps = 51/318 (16%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 + + I+R L L++Y+ L L Y ++K + I LS + +AFI Sbjct: 135 ERIGIDRALKTFKLRTYQ------LSLLREYLQKKYKVSDI-PLSQLD-KAFIEGFEYYL 186 Query: 83 IGDRSLKRS-----LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 DR LKRS LS +KS ++ K+ + L + ++ PR++++ Q + Sbjct: 187 SIDRKLKRSSVSSALSTLKSIVRMAVKKGVLDFYPFLGY-SYERPKGEPRSISQDQLQRI 245 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGD 195 +D E +W + R L++ + C GL IS+ +L +NI+ ++ L I+GK Sbjct: 246 ID-------LEIEWENYRIVRDLFV-FSCFSGLAISDVRNLREENIVLEEGELCIKGKRM 297 Query: 196 KIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-----PLNPGVFQRYI 247 K + V +LP AI+E Y RG R P N + + Sbjct: 298 KTKTPYRVQVLPPAW-AIMERY----------------RGKRAGFVFDVPTN-DIIHNGM 339 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 ++R +G+ T H RH+FA+ + LS G + ++ +LGH L TTQ+Y V+S+ Sbjct: 340 HYIQRSIGMKSPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERI 399 Query: 307 GDWMMEIYDQTHPSITQK 324 M ++ + + T K Sbjct: 400 HREMQKVQQRIQDTFTLK 417 >gi|258515633|ref|YP_003191855.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] gi|257779338|gb|ACV63232.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] Length = 323 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 59/254 (23%), Positives = 110/254 (43%), Gaps = 17/254 (6%) Query: 49 FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT 108 F F T + + I I + E ++ + ++ + ++ F + L +++ Sbjct: 55 FKKFLTTQAVNISLISAKTLDE---YVKSMKNADKKKNTINGRVKTLRVFFRILNEKEYI 111 Query: 109 TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168 ++ L ++ ++ +++Q N LL T + R+ I+ +L G+ Sbjct: 112 PDNPALGLKTIRGPKPEIFPFSDEQI-----NALLAQPDRTTFAGLRDYMIMQILLDTGV 166 Query: 169 RISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225 R+ E ++ ++ + T RI +GKG+K R V R+ I++Y + +L+ Sbjct: 167 RLEELCNIKYSDV--NLKTCRILVRKGKGNKSRTVLFGSETRRTIMKYLKVTG---DLDA 221 Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQ 284 + L G PL Q I GL + + HT RH+FA L NGGD ++ Sbjct: 222 ETNLILNQDGNPLKQRSVQDRISLHASAAGLKGVRPSPHTFRHTFAKKFLMNGGDPYVLR 281 Query: 285 SILGHFRLSTTQIY 298 +LGH +ST IY Sbjct: 282 DLLGHNSMSTVIIY 295 >gi|229170493|ref|ZP_04298144.1| Site-specific recombinase, phage integrase [Bacillus cereus AH621] gi|228612963|gb|EEK70137.1| Site-specific recombinase, phage integrase [Bacillus cereus AH621] Length = 352 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 85/310 (27%), Positives = 136/310 (43%), Gaps = 55/310 (17%) Query: 26 EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI-- 83 ++ G ++ TL Y+ + R F FL + K + I ++ IR ++ + +KI Sbjct: 40 KVAEGRAERTLHQYKENFRYFTYFLDY----KGLSRNIDTITTDVIRNYVVFMKNEKIQF 95 Query: 84 GDRSLKRS---------------LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 D + K S L ++ ++L ++ ESN M+ +K N P+ Sbjct: 96 EDHNYKPSDCKKVGLSPSTINTRLKTLRVMFRFLIDEELM-ESN--PMKQVKDVNE-PQ- 150 Query: 129 LNEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 E+ A+ VD + LL ++ + D RN I+ LL LRISEALSLT +I D S Sbjct: 151 --EEIAVLTVDELRRLLDVPNKRSYSDFRNYVIMNLLLDTFLRISEALSLTVNDI--DLS 206 Query: 187 TLRIQ-----GKGDKIRIVP-------LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234 T I K K RIVP LL + K E+ F N Q+ Sbjct: 207 TKVITVRATVAKSRKARIVPIKNTTANLLKDLIKENEEFETDHVFITNYEEQM------- 259 Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 + F++ ++ + G+ + H RH+ AT L GGD+R +Q +LGH L Sbjct: 260 ----DRNHFRKRLKGYAKETGITKNVHPHLFRHTGATMFLEAGGDIRHLQMLLGHADLRM 315 Query: 295 TQIYTNVNSK 304 YT+++ + Sbjct: 316 VMRYTHLSKQ 325 >gi|283797946|ref|ZP_06347099.1| site-specific recombinase, phage integrase family [Clostridium sp. M62/1] gi|291074412|gb|EFE11776.1| site-specific recombinase, phage integrase family [Clostridium sp. M62/1] gi|295091862|emb|CBK77969.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum K10] Length = 350 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 55/222 (24%), Positives = 106/222 (47%), Gaps = 13/222 (5%) Query: 85 DRSLKRSLSGIKSFLKYL--KKRKITTESNILNMRNLKKSNSLPRALNE-KQALTLVDNV 141 +R L R +S +KSF Y +R T + ++ + L + + ++E + L LV++ Sbjct: 109 ERGLTRKMSSLKSFYNYFFRNERIKTNPAALVKLPKLHEKEIIRLEIDEVARLLDLVEDG 168 Query: 142 LLHTSHETKWIDA---RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 T + + + R+ A++ LL G G+R+SE + L ++ + +RI KG K Sbjct: 169 QELTERQKAYHEKTKIRDLALMTLLLGTGIRVSECIGLNLNDVDFNVDGIRIHRKGGKEV 228 Query: 199 IVPLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 I+ V +A+ Y + + P N + LF ++ K +N + +++ R + Sbjct: 229 IIYFGDEVEQALRAYLEERKKMIPAPGN---EEALFLSMQKKRMNVRSVENLVKKYSRIV 285 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 T H LR ++ T+L GD+ + +LGH ++TT+ Sbjct: 286 TPLKKITPHKLRSTYGTNLYRETGDIYLVADVLGHADVNTTK 327 >gi|165873378|ref|ZP_02217977.1| integrase/recombinase, putative [Bacillus anthracis str. A0488] gi|167636799|ref|ZP_02395082.1| integrase/recombinase, putative [Bacillus anthracis str. A0442] gi|167642097|ref|ZP_02400319.1| integrase/recombinase, putative [Bacillus anthracis str. A0193] gi|170689746|ref|ZP_02880916.1| integrase/recombinase, putative [Bacillus anthracis str. A0465] gi|170709562|ref|ZP_02899962.1| integrase/recombinase, putative [Bacillus anthracis str. A0389] gi|177656393|ref|ZP_02937286.1| integrase/recombinase, putative [Bacillus anthracis str. A0174] gi|190569558|ref|ZP_03022419.1| integrase/recombinase, putative [Bacillus anthracis Tsiankovskii-I] gi|225871653|ref|YP_002753011.1| integrase/recombinase, putative [Bacillus cereus 03BB102] gi|227811599|ref|YP_002811610.1| integrase/recombinase, putative [Bacillus anthracis str. CDC 684] gi|229599814|ref|YP_002860839.1| integrase/recombinase, putative [Bacillus anthracis str. A0248] gi|254687863|ref|ZP_05151719.1| integrase/recombinase, putative [Bacillus anthracis str. CNEVA-9066] gi|254739157|ref|ZP_05196859.1| integrase/recombinase, putative [Bacillus anthracis str. Western North America USA6153] gi|254744957|ref|ZP_05202634.1| integrase/recombinase, putative [Bacillus anthracis str. Kruger B] gi|254756553|ref|ZP_05208582.1| integrase/recombinase, putative [Bacillus anthracis str. Vollum] gi|254762487|ref|ZP_05214327.1| integrase/recombinase, putative [Bacillus anthracis str. Australia 94] gi|301068214|ref|YP_003786985.1| integrase/recombinase [Bacillus anthracis CI] gi|164710753|gb|EDR16331.1| integrase/recombinase, putative [Bacillus anthracis str. A0488] gi|167509780|gb|EDR85204.1| integrase/recombinase, putative [Bacillus anthracis str. A0193] gi|167527725|gb|EDR90564.1| integrase/recombinase, putative [Bacillus anthracis str. A0442] gi|170125523|gb|EDS94450.1| integrase/recombinase, putative [Bacillus anthracis str. A0389] gi|170666121|gb|EDT16914.1| integrase/recombinase, putative [Bacillus anthracis str. A0465] gi|172079753|gb|EDT64870.1| integrase/recombinase, putative [Bacillus anthracis str. A0174] gi|190559337|gb|EDV13361.1| integrase/recombinase, putative [Bacillus anthracis Tsiankovskii-I] gi|225785568|gb|ACO25786.1| putative integrase/recombinase [Bacillus cereus 03BB102] gi|227007973|gb|ACP17715.1| integrase/recombinase, putative [Bacillus anthracis str. CDC 684] gi|229269433|gb|ACQ51069.1| integrase/recombinase, putative [Bacillus anthracis str. A0248] gi|300379300|gb|ADK08203.1| integrase/recombinase, putative [Bacillus cereus biovar anthracis str. CI] Length = 347 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 124/287 (43%), Gaps = 41/287 (14%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 S+ T + Y D FL ++ K TI I++LS+ E+ + + ++K +L+R Sbjct: 62 SERTKKLYLHDLSHFLRYI------KETIGIIKELSHNEMEIYFYQL-SKKYAATTLRRK 114 Query: 92 LSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 + ++ FLKY+ ++ S+ L ++KK + R L ++ N +L T +T Sbjct: 115 KTVVQQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLFPEEV-----NEILDTLKKT 169 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIVPLLPS 205 + ++ +LL GLRI E + +++ S LR+ GKG+K R V + Sbjct: 170 NFF---MYSLFFLLTTTGLRIEEVANAKWADLVFHPSLNVYLLRVVGKGNKTREVRIFED 226 Query: 206 VRKAILEYYDLCPF--------DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 V DLC +L+ + G +Y+ + LP Sbjct: 227 VLN------DLCHLRQLRKQKSELDASSSSAFLPKADGSHYRADYLSKYVAEKIEETNLP 280 Query: 258 L------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 T HT RH FA HL+ G +L+ I+ LGH + TT+ Y Sbjct: 281 FLRYRKHRITPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERY 327 >gi|89147528|gb|ABD62624.1| integrase [uncultured bacterium] Length = 163 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 45/69 (65%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 +R L+ + QR ++ R G+ + + H+ RHSFATHLL NG D+R++Q +LGH + Sbjct: 94 VRRHHLSEQIVQRAVKAALRTAGVRKNGSCHSFRHSFATHLLENGYDIRTVQELLGHKDV 153 Query: 293 STTQIYTNV 301 TT IYT+V Sbjct: 154 RTTMIYTHV 162 >gi|89147588|gb|ABD62653.1| integrase [uncultured bacterium] Length = 163 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 43/64 (67%) Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + G R ++ + G+ +AHTLRHSFATH++ G D+R++Q +LGH ++TTQI Sbjct: 99 FDDGTLSRSLKSACKRAGIVKPVSAHTLRHSFATHIIEAGYDIRTVQELLGHKDVATTQI 158 Query: 298 YTNV 301 YT+V Sbjct: 159 YTHV 162 >gi|85707316|ref|ZP_01038400.1| putative integrase/recombinase [Roseovarius sp. 217] gi|85668197|gb|EAQ23074.1| putative integrase/recombinase [Roseovarius sp. 217] Length = 335 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 69/292 (23%), Positives = 130/292 (44%), Gaps = 26/292 (8%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI-GDR 86 +RG S + ++Y + F A + +I QL I AF+ T + G Sbjct: 19 QRGFSAHSSETYAHAFKLLFQFAARRVGSSPSQLSIEQLDAPLILAFLDHLETDRGNGAT 78 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPRALNEKQALTLVDNVLL 143 S L+ IKSF+++++ + + + +R + + N L + L++ + +L Sbjct: 79 SRNARLAAIKSFMRFVEYQYPALLAQVAQIRAIPTKRCENKLVQHLSKDEV-----QAVL 133 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-TLRIQGKGDKIRIVPL 202 + T + AR+ A+++L + GLR+SE + +++ Q+ +L ++GKG K R PL Sbjct: 134 NAPDVTTRLGARDRAMMHLCFAGGLRVSELVGAALTDLVLGQAPSLLVRGKGRKHRHFPL 193 Query: 203 ---LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ----RYIRQLRRYLG 255 S +A L L P +F G+ + F+ +++ + ++ Sbjct: 194 WKQTASDLRAWLAVRGLTPAP-------EIFVNAEGRAMTRSGFEYVLDKHVVKASQHCP 246 Query: 256 --LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 S + H LRHS A +L D+R + LGH + TT+ Y V++ Sbjct: 247 SLAGRSVSPHQLRHSCAVIMLEATRDIRKVALWLGHADIRTTETYLRVDAAQ 298 >gi|229002464|ref|ZP_04160553.1| Integrase/recombinase [Bacillus mycoides Rock3-17] gi|228758597|gb|EEM07731.1| Integrase/recombinase [Bacillus mycoides Rock3-17] Length = 304 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 66/286 (23%), Positives = 130/286 (45%), Gaps = 23/286 (8%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 I++G S+ T+ SY D + F + + + I++ + R ++ R + + Sbjct: 10 IDKGKSQNTVLSYINDLQIFFQEMRLNPDSYVISNDIKKWT----RNMLNPREGKTLSVS 65 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA---LNEKQALTLVDNVLL 143 ++ R L+ ++S+ + ++ + + + ++++LK ++ L EK+ L+D + Sbjct: 66 TINRRLNTLRSYFSWAEREQYIKVNPMRDIKDLKVADEEYEKIMWLTEKEFEALLDRMRK 125 Query: 144 H------TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 + + E K+ R+ AI+Y+L GLR+ E SL +I D +R+ GKG K+ Sbjct: 126 YPVKTRGVNPEEKY--RRDRAIIYILTYAGLRVEELSSLKITDIDIDFKKIRVIGKGTKV 183 Query: 198 RIVPLLPSVRKAILEYYDL---CPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRY 253 R VP+ + +L++ D + Q P +F R + + Q I Y Sbjct: 184 RTVPMSNFLYNEVLDWLQFRNKIAKDKEIVNQSPYVFYSQRSEKFSIRGIQAMIEN---Y 240 Query: 254 LGLPLSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRLSTTQIY 298 T H RH+F +L + D+ ++ + GH +STT Y Sbjct: 241 STSDKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSHISTTTRY 286 >gi|288920327|ref|ZP_06414639.1| integrase family protein [Frankia sp. EUN1f] gi|288348275|gb|EFC82540.1| integrase family protein [Frankia sp. EUN1f] Length = 465 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 30/62 (48%), Positives = 39/62 (62%), Gaps = 1/62 (1%) Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK-NGGDWMMEIYDQT 317 + H LRHSFA HLL G D+R +Q +LGH +STTQIYT N+ D + E+Y + Sbjct: 350 GASPHVLRHSFAAHLLDRGADVRVVQELLGHASVSTTQIYTLKNTDLTTMDHLREVYTSS 409 Query: 318 HP 319 HP Sbjct: 410 HP 411 Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust. Identities = 38/165 (23%), Positives = 69/165 (41%), Gaps = 18/165 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY---TEIRAFISK 77 +L +++ ERGL++ ++ +Y D R++ E ++ + IR L +I F Sbjct: 57 YLDHVDGERGLARNSVLAYRRDLRRY--------HEHLSGRGIRSLGAVGEAQIAQFAIT 108 Query: 78 RRT-----QKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALN 130 RT + S+ R L ++S +Y + + S + + ++ Sbjct: 109 LRTGDESHPPLAPASVARMLVAVRSLHRYAAREGDVSADVSGPVRPAAPPRRPPRALTVD 168 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175 + AL L R++A+L LLYG G RISEA+ Sbjct: 169 QVTALILQAGAAAGADQSGPARRLRSAALLELLYGTGARISEAVG 213 >gi|77734441|emb|CAJ26227.1| integerase-recombinase [Thermotoga naphthophila RKU-10] Length = 190 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 19/133 (14%) Query: 158 AILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 AI +L G+R+SE ++L+ +I +++ + +RI+GKG+K RI+ + ++ + E + Sbjct: 76 AIFKVLANTGMRVSEIVNLSVHDISVNETARIRIKGKGNKERIINI---SKELVEELMNS 132 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 F+ + P R I QR +++ R G+ T H RHSFA L+ Sbjct: 133 GFFE-----KKPSVRSI----------QRAVKRYARKAGIKKKVTPHIFRHSFAVALIER 177 Query: 277 GGDLRSIQSILGH 289 G L IQ++LGH Sbjct: 178 GVPLNKIQALLGH 190 >gi|323138768|ref|ZP_08073833.1| integrase family protein [Methylocystis sp. ATCC 49242] gi|322396015|gb|EFX98551.1| integrase family protein [Methylocystis sp. ATCC 49242] Length = 335 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 70/297 (23%), Positives = 132/297 (44%), Gaps = 32/297 (10%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF---ISKRR 79 +++ +RG S + ++Y R L F A + + + T+ + + AF I + R Sbjct: 14 EHMPQQRGYSLHSCEAYATCFRLLLTFAADRLKTRPSRLTLEAIDAAMVLAFLAHIEQDR 73 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPRALNEKQALT 136 R+L+ L+ IK+F++Y++ ++ + + + + + L R L + T Sbjct: 74 GNSPATRNLR--LAAIKAFMRYVELQRPSALEQVAQIDAIPGKRHDQKLIRHLTTAEVRT 131 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGD 195 ++D T R+ A+L+L + GLR+SE + LT + + ++ + GKG Sbjct: 132 ILDAPDTSTRSGI-----RDRAMLHLCFAAGLRVSELVGLTMNGVTLHPNPSVLVFGKGR 186 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYI------- 247 + R +PL + + + + N P LF +G + F+ YI Sbjct: 187 RERSLPLWKETARDVRAW-----LAVRGNPPTPELFVNAKGMAMTRAGFE-YILEKHGAI 240 Query: 248 --RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 ++ +G LS H LRHS A +L D+R + LGH + TT+IY ++ Sbjct: 241 AAKKCPTLVGRTLSP--HLLRHSCAVLMLQATRDIRKVALWLGHADIRTTEIYLGMD 295 >gi|89147576|gb|ABD62647.1| integrase [uncultured bacterium] gi|89147610|gb|ABD62664.1| integrase [uncultured bacterium] Length = 163 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 41/61 (67%) Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 G+ Q +++ G+ H+LRHSFATHLL NG D+R++Q +LGH +STT IYT+ Sbjct: 102 GILQNALKRAVDAAGIVKRANCHSLRHSFATHLLGNGYDIRTVQELLGHKDVSTTMIYTH 161 Query: 301 V 301 V Sbjct: 162 V 162 >gi|295101278|emb|CBK98823.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6] Length = 327 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 60/253 (23%), Positives = 119/253 (47%), Gaps = 29/253 (11%) Query: 61 QTIRQLSYTEIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116 + +RQ++ ++R +++ +RR+ K+ +++R LS SF +L+ +S + + Sbjct: 86 KAVRQITTDDLRRYLTNYQVQRRSSKVTIDNIRRILS---SFFSWLEDEDFIVKSPVRRI 142 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 +K + + ++ + DN AR+ A++ LL G+R+ E ++L Sbjct: 143 HKVKTAKVVKDTYTDEVLELMRDNC----------TTARDLAMIDLLASSGMRVGELVTL 192 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRG 232 ++I ++ + GKG+K R+V + + Y D P L ++++ P R Sbjct: 193 NREDINFNERECVVIGKGNKERLVYFDARTKIHLQNYLEGRTDENPA-LFVSLKAPFDRL 251 Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 + G GV R +R+L + L +P H R + AT + G + +Q +LGH ++ Sbjct: 252 MIG-----GVETR-LRELGKRLNIP-KVHPHKFRRTLATTAIDKGMPIEQVQQLLGHQKI 304 Query: 293 STTQIYTNVNSKN 305 TT Y V +N Sbjct: 305 DTTMHYAMVKQQN 317 >gi|223369844|gb|ACM88791.1| integrase [uncultured bacterium] Length = 163 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 30/64 (46%), Positives = 41/64 (64%) Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L+P + +R G+ ++HT RHSFATHLL G D+R+IQ +LGH +STT I Sbjct: 99 LDPNTIDKALRVAVAKAGIAKRVSSHTFRHSFATHLLQRGQDIRTIQDLLGHKDVSTTMI 158 Query: 298 YTNV 301 YT+V Sbjct: 159 YTHV 162 >gi|206578539|ref|YP_002237615.1| site-specific recombinase, phage integrase family [Klebsiella pneumoniae 342] gi|206567597|gb|ACI09373.1| site-specific recombinase, phage integrase family [Klebsiella pneumoniae 342] Length = 338 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 83/304 (27%), Positives = 134/304 (44%), Gaps = 40/304 (13%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L+ L ER LS T +SY R L F + + + LS IR F+ + + Sbjct: 16 LEYLIGERNLSVNTQKSYRDMLRLLLPFASEAAGKATDKLLVEDLSEGCIRNFLIRLGDE 75 Query: 82 KIGDRSLK-RSLSGIKSFLKYLKKR--KITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S + + L+GI+S +++ + T L L+KS++ + EK + Sbjct: 76 RYCSASTRNQRLAGIRSLARFIAMHAPEYTDWYGRLKSIPLRKSSTALISYLEKDEM--- 132 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MD------DQSTLRIQ 191 + LL R+ A+L LY G R E + ++ M+ + S++ I Sbjct: 133 -DALLSAPDVDTAQGRRDHAVLLFLYNTGARADEVAHVKMGDLNMNIAAGHYNNSSVVIH 191 Query: 192 GKGDKIRIVPLLPSVRK--AILEYYDLCPFDLNLNIQ-LPLFR-GIRGKPLN-------- 239 GKG+++R PL P + +L L L +N Q PL R GIR + Sbjct: 192 GKGNRLRRCPLWPETARLLQLLGRDRLSQETLFVNRQNRPLTRFGIRDVVVRNVAVAAAS 251 Query: 240 -PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 P + Q+ + + HT+RH+ ATHLL G D+ +I++ LGH L+TT IY Sbjct: 252 VPSLSQKRV-------------SPHTIRHTTATHLLRAGVDINTIRAWLGHVSLATTLIY 298 Query: 299 TNVN 302 V+ Sbjct: 299 AEVD 302 >gi|89147488|gb|ABD62604.1| integrase [uncultured bacterium] Length = 163 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 2/90 (2%) Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 E++ + P NL++ P +R Q+ ++ + G+ + H LRHSFAT Sbjct: 75 EWFWVFPSS-NLSVD-PRANAVRRHHAGESAVQKAVKVATGHAGIEKKVSCHVLRHSFAT 132 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 HLL +G D+R++Q +LGH + TT+IYT+V Sbjct: 133 HLLESGRDIRTVQELLGHSDVKTTEIYTHV 162 >gi|77734443|emb|CAJ26228.1| integerase-recombinase [Thermotoga sp. RQ2] Length = 190 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 19/133 (14%) Query: 158 AILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 AI +L G+R+SE ++L+ +I +++ + +RI+GKG+K RI+ + ++ + E + Sbjct: 76 AIFKVLANTGMRVSEIVNLSVHDISVNETARIRIKGKGNKERIINI---SKELVEELMNS 132 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 F+ + P R I QR +++ R G+ T H RHSFA L+ Sbjct: 133 GFFE-----KKPSVRSI----------QRAVKRYARKAGIKKKVTPHIFRHSFAVALIER 177 Query: 277 GGDLRSIQSILGH 289 G L IQ++LGH Sbjct: 178 GVPLNKIQALLGH 190 >gi|54027830|ref|YP_122070.1| putative recombinase [Nocardia farcinica IFM 10152] gi|54019338|dbj|BAD60706.1| putative recombinase [Nocardia farcinica IFM 10152] Length = 311 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 58/245 (23%), Positives = 100/245 (40%), Gaps = 18/245 (7%) Query: 63 IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122 I ++ +R F+S + + KR + + +F ++ + + + + + + Sbjct: 55 IDGVTVAAVRGFLSG--IADLAPATRKRKRAAVAAFCRWAVRHDLLAANPMDKVDTITVP 112 Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNI 181 +LPR + + + +D R+ + Y CG R SE L ++ Sbjct: 113 KTLPRPAPAADIAKVFAAICARRPRKDVALDVLRDRVLFETAYVCGARASEVCELYVEDF 172 Query: 182 ---MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI---RG 235 +DD+ +R+ GKG +R V L A+L Y D P+FR RG Sbjct: 173 DLRLDDEH-VRLHGKGGTVRTVLLDDRGYVAMLRLY----LDRTGYTAGPMFRASINGRG 227 Query: 236 KPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 PL+ + + RY + H LRHS AT L++ G + ++ LGH T Sbjct: 228 GPLS---YSAAHHRWSRYCAAAGVDIDIHQLRHSHATELINAGVSIEVVRKRLGHASTET 284 Query: 295 TQIYT 299 TQIY Sbjct: 285 TQIYA 289 >gi|30908738|gb|AAP37601.1| IntI [uncultured bacterium] Length = 161 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 38/58 (65%) Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 QR +RQ R L T H LRHSFATHLL G D+R++Q +LGH + TT IYT+V Sbjct: 104 QRAVRQAARDAKLHKPVTPHVLRHSFATHLLQAGYDIRTVQELLGHKDVQTTMIYTHV 161 >gi|89147456|gb|ABD62588.1| integrase [uncultured bacterium] Length = 164 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 39/61 (63%) Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 G ++++ G+ TAH LRHS+ATHLL G DLR+IQ LGH + TT+IYT+ Sbjct: 103 GAASKWLKNAVGKAGIEKRVTAHVLRHSYATHLLQKGVDLRTIQEALGHSSVKTTEIYTH 162 Query: 301 V 301 V Sbjct: 163 V 163 >gi|77734435|emb|CAJ26219.1| integerase-recombinase [Thermotoga sp. RQ7] Length = 190 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 19/133 (14%) Query: 158 AILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 AI +L G+R+SE ++L+ +I +++ + +RI+GKG+K RI+ +V K ++E Sbjct: 76 AIFKVLANTGMRVSEIVNLSVHDISVNETARIRIKGKGNKERII----NVSKELVEEL-- 129 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 + + P R I QR +++ R G+ T H RHSFA L+ Sbjct: 130 --MNSGFFEKKPSVRSI----------QRAVKRYARKAGIKKKVTPHIFRHSFAVALIER 177 Query: 277 GGDLRSIQSILGH 289 G L IQ++LGH Sbjct: 178 GVPLNKIQALLGH 190 >gi|114566275|ref|YP_753429.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337210|gb|ABI68058.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 337 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 78/303 (25%), Positives = 135/303 (44%), Gaps = 34/303 (11%) Query: 19 QNW-LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 QN+ L L +RG T+ SY DT + L +K++ + +S T + F+ Sbjct: 11 QNYFLSYLISQRGYGNNTVASYR-DTFKLLFMFLESDGKKLSKLKLTDISQTCVLQFLEW 69 Query: 78 RRTQK---IGDRSLKRSLSGIKSFLKYLKKRKITTE---SNILNMRNLKKSNSLPRALNE 131 T++ + R+L+ L+ +KSF Y+ ++I+N+ + P L E Sbjct: 70 AETERHNSVSTRNLR--LTVLKSFFGYVLSTSPEFSGQCTDIINIPAKRVEKKPPLYLTE 127 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-LRI 190 + +LL+ R+ AIL LLY R+ E ++L ++ + + + Sbjct: 128 SET-----KLLLNAPDRNSREGIRHMAILTLLYDSACRVQELINLNVADVTIGRCCKVFV 182 Query: 191 QGKGDKIRIVPLLPSVRKAILEY---YDLCPFDLNLNIQLPLFRGIRGKPLNPG----VF 243 +GKG K R +P+ K + Y Y L P ++ LF G L + Sbjct: 183 KGKGSKYREIPIFGETGKILERYINAYGLKPGEV-------LFTNRSGGRLTRAGVSYIM 235 Query: 244 QRYIRQLR-RY---LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 +Y + L+ RY LS + H +RHS ATHL++ ++ +++ LGH + TTQ+Y Sbjct: 236 NKYKKILQERYANRFNSNLSLSPHLMRHSKATHLVNENVNIYNVRDFLGHTSVITTQVYL 295 Query: 300 NVN 302 N Sbjct: 296 TSN 298 >gi|218133860|ref|ZP_03462664.1| hypothetical protein BACPEC_01749 [Bacteroides pectinophilus ATCC 43243] gi|217991235|gb|EEC57241.1| hypothetical protein BACPEC_01749 [Bacteroides pectinophilus ATCC 43243] Length = 248 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 60/252 (23%), Positives = 116/252 (46%), Gaps = 27/252 (10%) Query: 61 QTIRQLSYTEIRAFI----SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116 ++I+ + +IR ++ +K+++ K+ +++R LS SF +L+ +S + + Sbjct: 7 KSIKYIVTDDIRCYLTEYQAKKKSSKVTIDNIRRILS---SFFSWLEDEDYILKSPVRRI 63 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 +K ++ +++ + DN + R+ A++ +L G+R+ E + L Sbjct: 64 HKVKTGTNIKETYSDEALELMRDNC----------TELRDLAMIDMLASTGMRVGEMVLL 113 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD---LNLNIQLPLFRGI 233 ++I ++ + GKGDK RIV + + Y + D L +++Q P R Sbjct: 114 NREDIDFNERECVVFGKGDKERIVYFDARTKIHLQNYLNSRKDDNPALFVSLQSPHNR-- 171 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 +N G + +RQL + LGL H R + AT + G + +Q +LGH R+ Sbjct: 172 ----MNIGGIEVRLRQLGKRLGLN-KVHPHKFRRTLATMAIDKGMPIEQLQQLLGHRRID 226 Query: 294 TTQIYTNVNSKN 305 TT Y V N Sbjct: 227 TTLQYAMVKQSN 238 >gi|319653998|ref|ZP_08008091.1| hypothetical protein HMPREF1013_04710 [Bacillus sp. 2_A_57_CT2] gi|317394320|gb|EFV75065.1| hypothetical protein HMPREF1013_04710 [Bacillus sp. 2_A_57_CT2] Length = 359 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 16/164 (9%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ AI+ L+ GLRI+E +L ++ + + + KG+K + VP +K I Y Sbjct: 192 RDIAIVSLILSAGLRIAEVSNLDLSDLDLAEEKVYVLRKGEKEQFVPFSSIAKKNIQHYL 251 Query: 215 DL------CPFDLNLNIQLPLFRGIRGKP----LNPGVFQRYIRQLRRYLGLPLSTTAHT 264 ++ P D + LF + +P + Q I + + G P+ +AH Sbjct: 252 EIRNVRYNSPKD-----EQALFLTKQQQPYGVRMTKRAMQLMIEKYAKAFGKPM-LSAHK 305 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 LRHS AT D+ S++ LGH + TT IYT+V S + D Sbjct: 306 LRHSMATRHYQKNKDIASLKDHLGHESIETTMIYTHVLSSDQKD 349 >gi|315637161|ref|ZP_07892383.1| phage integrase family site-specific recombinase [Arcobacter butzleri JV22] gi|315478528|gb|EFU69239.1| phage integrase family site-specific recombinase [Arcobacter butzleri JV22] Length = 350 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 47/145 (32%), Positives = 75/145 (51%), Gaps = 13/145 (8%) Query: 166 CGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSV-RKAILEYYDL--CPFD 220 G+R+SE L+L ++I D+ L+I+GKG+K R+V + S+ K + + D+ C D Sbjct: 204 TGIRVSEILNLRIKDIFKEDNVYMLQIKGKGNKPRVVMIKSSIIEKELQNWLDMRVCNSD 263 Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGD 279 L L +G+ L R + + G+ AH LRHSFAT L D Sbjct: 264 L-------LVCNQKGERLTQAYISRVVENILISAGIRKEKNGAHMLRHSFATLLYQKHHD 316 Query: 280 LRSIQSILGHFRLSTTQIYTNVNSK 304 L +Q LGH ++T++IYT+ + + Sbjct: 317 LILVQEALGHADINTSRIYTHFDKE 341 >gi|89073768|ref|ZP_01160282.1| integrase/recombinase [Photobacterium sp. SKA34] gi|89050543|gb|EAR56035.1| integrase/recombinase [Photobacterium sp. SKA34] Length = 480 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 62/245 (25%), Positives = 115/245 (46%), Gaps = 16/245 (6%) Query: 69 TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLK--KSNSL 125 + I++F+S R + DR + + + L+ L+ + + ++++ L+ K+ L Sbjct: 222 STIQSFLSDRIDNQSSDRKKTYAPATADNLLRMLRGVAQHAWLAELISVETLERIKAIKL 281 Query: 126 PRALNEKQALTLVDNVLLHTS-----HETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 PR + L + L H S + K R++AI +L+Y GLR +E +++ + Sbjct: 282 PRGSRQSSGRYLSYSELDHISAITLNQKNKVKALRDNAIFWLMYEAGLRRAEVINVNSFD 341 Query: 181 IMDDQSTLRIQGKGDKIRIVPLL--PSVRKAILEYYDLCPFDLNLNI-----QLPLFRGI 233 I ++ LR+ GKG+K R VP + A+ ++ + D N N+ + ++ + Sbjct: 342 IDMNRCQLRVVGKGNKERYVPFSRNSDLYNAMAKWLGVRLKDFNPNLPTLFCTINRYQSL 401 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 L ++L LG + H RHS AT+LL +G DL + +GH ++ Sbjct: 402 TYMRLTTQTLNDLCKKLN-MLGFSRVVSPHDFRHSVATNLLRSGYDLLLVSKFMGHSSIT 460 Query: 294 TTQIY 298 TTQ Y Sbjct: 461 TTQRY 465 >gi|228470648|ref|ZP_04055504.1| transposase [Porphyromonas uenonis 60-3] gi|313887085|ref|ZP_07820784.1| site-specific recombinase, phage integrase family [Porphyromonas asaccharolytica PR426713P-I] gi|228307656|gb|EEK16635.1| transposase [Porphyromonas uenonis 60-3] gi|312923496|gb|EFR34306.1| site-specific recombinase, phage integrase family [Porphyromonas asaccharolytica PR426713P-I] Length = 406 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 84/318 (26%), Positives = 143/318 (44%), Gaps = 51/318 (16%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 + + I+R L L++Y+ L L Y ++K + I LS + +AFI Sbjct: 123 ERIGIDRALKTFKLRTYQ------LSLLREYLQKKYKVSDI-PLSQLD-KAFIEGFEYYL 174 Query: 83 IGDRSLKRS-----LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 DR LKRS LS +KS ++ K+ + L + ++ PR++++ Q + Sbjct: 175 SIDRKLKRSSVSSALSTLKSIVRMAVKKGVLDFYPFLGY-SYERPKGEPRSISQDQLQRI 233 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGD 195 +D E +W + R L++ + C GL IS+ +L +NI+ ++ L I+GK Sbjct: 234 ID-------LEIEWENYRIVRDLFV-FSCFAGLAISDVRNLREENIVLEEGELCIKGKRM 285 Query: 196 KIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-----PLNPGVFQRYI 247 K + V +LP AI+E Y RG R P N + + Sbjct: 286 KTKTPYRVQVLPPAW-AIMERY----------------RGKRAGFVFDVPTN-DIIHNGM 327 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 ++R +G+ T H RH+FA+ + LS G + ++ +LGH L TTQ+Y V+S+ Sbjct: 328 HYIQRNIGMESPLTFHMARHTFASLITLSAGVPIETVSQMLGHTNLRTTQVYAAVSSERI 387 Query: 307 GDWMMEIYDQTHPSITQK 324 M + + + T K Sbjct: 388 HREMQNVQQRIQDTFTLK 405 >gi|295840998|dbj|BAJ06875.1| integron integrase intI [uncultured bacterium] Length = 292 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 75/242 (30%), Positives = 105/242 (43%), Gaps = 68/242 (28%) Query: 91 SLSGIKSFLKYLK-KRKITTESN-------ILNMRNLKKSN-----SLPRALNEKQALTL 137 S + +K FL +L KRK+ S + R++ K +PRA ++ Sbjct: 61 SAADVKDFLTFLAVKRKVPASSQNQAFNALLFFFRHVLKKEFEEIKDVPRAKRKR----- 115 Query: 138 VDNVLLHTSHETKWIDARNSAILY-------LLYGCGLRISEALSLTPQNIMDDQSTLRI 190 N+ + S E ID+ SA+ Y +LYGCGLR+SE +SL Q++ DQ L + Sbjct: 116 --NIPVVLSREE--IDSIISALAYPYDLVVKMLYGCGLRLSECMSLRVQSLNFDQRVLTV 171 Query: 191 Q-GKGDKIRIVP----LLPSVRKAILE-------------YYDLCPFD------LNLNIQ 226 GKG K R VP L+P + KA LE Y FD N I+ Sbjct: 172 HDGKGKKDRAVPLPETLMPEL-KAQLEVVKGVHESDLTEGYAGAFLFDSLGEKYKNAAIE 230 Query: 227 LP---LFRG-----------IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 LP F G R L+ Q+ IR+ + + +AHT RH+FATH Sbjct: 231 LPWQWFFPGKTLTFVPEEKEYRRYHLHDSHVQKAIRRAVKKAKITKRASAHTFRHTFATH 290 Query: 273 LL 274 LL Sbjct: 291 LL 292 >gi|330720867|gb|EGG99058.1| Integron integrase IntI2 [gamma proteobacterium IMCC2047] Length = 144 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 31/63 (49%), Positives = 41/63 (65%) Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 QR I + G+ T HTLRHSFAT LL G D+R++Q +LGH ++TT IYT+V + Sbjct: 71 QRAIANGAKAAGIMKRCTCHTLRHSFATQLLEAGYDIRTVQELLGHANVATTMIYTHVLN 130 Query: 304 KNG 306 K G Sbjct: 131 KGG 133 >gi|146301442|ref|YP_001196033.1| phage integrase family protein [Flavobacterium johnsoniae UW101] gi|146155860|gb|ABQ06714.1| phage integrase family protein [Flavobacterium johnsoniae UW101] Length = 305 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 71/285 (24%), Positives = 128/285 (44%), Gaps = 39/285 (13%) Query: 39 YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF----ISK---RRTQKIGDRSLKRS 91 Y+ +FLI+L EK I +IR+++ E ++ IS+ R + ++++K Sbjct: 34 YQTAVSEFLIWL-----EKSGINSIRKVTGRESVSYYEHLISRPKHRGNGTLAEKTIKFH 88 Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP----RALNEKQALTLVDNVLLHTSH 147 L + F+ N+L ++K+ +P + N + AL++ + +L+ Sbjct: 89 LFALGLFV-----------LNLLENNQIEKAYYIPSYSGESGNSRNALSVEEIRMLYQHC 137 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206 E A++ YGCGLR SE +L ++I + + ++ GKG K R VP+ V Sbjct: 138 ENDL----QRALISTAYGCGLRRSEIEALNTRDIQLSRGMVIVRDGKGSKRREVPMSDMV 193 Query: 207 RKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNP----GVFQRYIRQLRRYLGLPLS 259 I +Y ++ + F GK +N + ++ + Q Y + Sbjct: 194 AGHIKKYIAEERYEKLKATNRTEDAFFIYDSGKRMNGEYLNSMLKKIVGQTSSYELIQKD 253 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 T H LRHS A+HL+ + I+ LGH +++TT IY N + Sbjct: 254 ITLHCLRHSIASHLMEKNAGIDFIRGFLGHSQINTTYIYAVKNKR 298 >gi|213025044|ref|ZP_03339491.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 74 Score = 63.5 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 43/59 (72%), Gaps = 4/59 (6%) Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Q HP Sbjct: 18 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQHHP 72 >gi|77734437|emb|CAJ26220.1| integerase-recombinase [Thermotoga neapolitana] gi|77734439|emb|CAJ26226.1| integerase-recombinase [Thermotoga neapolitana] gi|77734447|emb|CAJ26230.1| integerase-recombinase [Thermotoga sp. SG1] Length = 190 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 19/133 (14%) Query: 158 AILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 AI +L G+R+SE ++L+ +I +++ + +RI+GKG+K RI+ +V K ++E Sbjct: 76 AIFKVLANTGMRVSEIVNLSVHDISVNETARIRIKGKGNKERII----NVSKELVEEL-- 129 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 + + P R I QR +++ R G+ T H RHSFA L+ Sbjct: 130 --MNSGFFEKKPSVRSI----------QRAVKRYARKAGIKKKVTPHIFRHSFAVALIER 177 Query: 277 GGDLRSIQSILGH 289 G L IQ++LGH Sbjct: 178 GVPLNKIQALLGH 190 >gi|262381150|ref|ZP_06074288.1| integrase [Bacteroides sp. 2_1_33B] gi|301311180|ref|ZP_07217108.1| integrase protein [Bacteroides sp. 20_3] gi|262296327|gb|EEY84257.1| integrase [Bacteroides sp. 2_1_33B] gi|300830754|gb|EFK61396.1| integrase protein [Bacteroides sp. 20_3] Length = 392 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 53/165 (32%) Query: 162 LLYGC--GLRISEALSLTPQN--IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 L+ C GLR S+ +S+T +N I+DD+ L + SV+ Sbjct: 237 FLFSCYTGLRFSDIVSITKENFLIIDDKVWL-------------VYSSVKT--------- 274 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA--------------- 262 +++++LPLF GK L +++RY R G+PLS+ + Sbjct: 275 ----DVSVRLPLFLLFEGKSL--PIYERYKNAPRTLFGVPLSSNSNVNKQLRRISQLASI 328 Query: 263 ------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 HT RH+ AT LL NG ++ ++Q +LGH + TT+IY+N+ Sbjct: 329 DKKVSFHTARHTNATLLLYNGANITTVQKLLGHKSVRTTEIYSNI 373 >gi|156138685|dbj|BAF75919.1| integron integrase [uncultured bacterium] Length = 180 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 41/68 (60%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 +R ++ Q+ I R GL HTLRHSFATHLL G D+R+IQ +LGH + Sbjct: 113 VRRHHIHETTVQKAITDAVRRAGLSKPAGCHTLRHSFATHLLEAGQDIRTIQELLGHSDV 172 Query: 293 STTQIYTN 300 STT IYT+ Sbjct: 173 STTMIYTH 180 >gi|150007153|ref|YP_001301896.1| integrase [Parabacteroides distasonis ATCC 8503] gi|255015232|ref|ZP_05287358.1| integrase [Bacteroides sp. 2_1_7] gi|256840529|ref|ZP_05546037.1| integrase [Parabacteroides sp. D13] gi|298377579|ref|ZP_06987531.1| integrase [Bacteroides sp. 3_1_19] gi|149935577|gb|ABR42274.1| integrase [Parabacteroides distasonis ATCC 8503] gi|256737801|gb|EEU51127.1| integrase [Parabacteroides sp. D13] gi|298265598|gb|EFI07259.1| integrase [Bacteroides sp. 3_1_19] Length = 392 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 53/165 (32%) Query: 162 LLYGC--GLRISEALSLTPQN--IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 L+ C GLR S+ +S+T +N I+DD+ L + SV+ Sbjct: 237 FLFSCYTGLRFSDIVSITKENFLIIDDKVWL-------------VYSSVKT--------- 274 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA--------------- 262 +++++LPLF GK L +++RY R G+PLS+ + Sbjct: 275 ----DVSVRLPLFLLFEGKSL--PIYERYKNAPRTLFGVPLSSNSNVNKQLRRISQLASI 328 Query: 263 ------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 HT RH+ AT LL NG ++ ++Q +LGH + TT+IY+N+ Sbjct: 329 DKKVSFHTARHTNATLLLYNGANITTVQKLLGHKSVRTTEIYSNI 373 >gi|10956351|ref|NP_052799.1| hypothetical protein pxo1_103 [Bacillus anthracis] gi|21392858|ref|NP_652938.1| integrase/recombinase, putative [Bacillus anthracis str. A2012] gi|47566494|ref|YP_022446.1| integrase/recombinase [Bacillus anthracis str. 'Ames Ancestor'] gi|208743354|ref|YP_002267805.1| integrase/recombinase, putative, (pxo1-103) [Bacillus cereus] gi|4894320|gb|AAD32408.1| pXO1-103 [Bacillus anthracis] gi|20520245|gb|AAM26127.1| putative integrase/recombinase [Bacillus anthracis str. A2012] gi|47552309|gb|AAT35474.1| integrase/recombinase, putative [Bacillus anthracis str. 'Ames Ancestor'] Length = 317 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 124/287 (43%), Gaps = 41/287 (14%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 S+ T + Y D FL ++ K TI I++LS+ E+ + + ++K +L+R Sbjct: 32 SERTKKLYLHDLSHFLRYI------KETIGIIKELSHNEMEIYFYQL-SKKYAATTLRRK 84 Query: 92 LSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 + ++ FLKY+ ++ S+ L ++KK + R L ++ N +L T +T Sbjct: 85 KTVVQQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLFPEEV-----NEILDTLKKT 139 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIVPLLPS 205 + ++ +LL GLRI E + +++ S LR+ GKG+K R V + Sbjct: 140 NFF---MYSLFFLLTTTGLRIEEVANAKWADLVFHPSLNVYLLRVVGKGNKTREVRIFED 196 Query: 206 VRKAILEYYDLCPF--------DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 V DLC +L+ + G +Y+ + LP Sbjct: 197 VLN------DLCHLRQLRKQKSELDASSSSAFLPKADGSHYRADYLSKYVAEKIEETNLP 250 Query: 258 L------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 T HT RH FA HL+ G +L+ I+ LGH + TT+ Y Sbjct: 251 FLRYRKHRITPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERY 297 >gi|332800312|ref|YP_004461811.1| integrase family protein [Tepidanaerobacter sp. Re1] gi|332698047|gb|AEE92504.1| integrase family protein [Tepidanaerobacter sp. Re1] Length = 285 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 69/275 (25%), Positives = 128/275 (46%), Gaps = 32/275 (11%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 S+ T+ YE ++ + F +F + + I ++ +I ++ ++ + I S RS Sbjct: 20 SEQTITGYE---KELIYFDSFLSVKHNCPVYIEDVTLEDIEDYLLDQKKRGIASASRSRS 76 Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLVDNV---LLHTSH 147 + ++SF Y K+ IT + NI ++ K R L E++ L + ++ T+ Sbjct: 77 VYILRSFYNYCVKKDITAK-NIASLIEPVKVKQKERGYLTEEEFNKLAVAIKQPVIRTAV 135 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSV 206 ET ++ G R+SE + L ++ ++ + I +GKG K R +P+ + Sbjct: 136 ET-------------MFYTGGRMSEIIHLKLDDVNLEEKVIHITKGKGGKARDIPINDKL 182 Query: 207 RKAILEYYDLCPFDLNL-NIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 + Y + N+ + + F ++ GK ++ R I++ +GL +AH Sbjct: 183 YDILKNYIE------NIRDAKSSRFFALKSTGK-VSSSYVNRLIKEAAYEVGLKKDVSAH 235 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 LRHSF T+LL G + SIQ +LGH L+ T Y Sbjct: 236 ILRHSFGTNLLEKGASVVSIQKLLGHANLAVTTRY 270 >gi|227461225|gb|ACP39553.1| putative integron integrase [uncultured microorganism] Length = 266 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 41/64 (64%) Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L+ QR ++Q R G+ + HT RH FATHLL +G D+R++Q +LGH + TT I Sbjct: 203 LHEQTVQRAVKQAVRRAGIQQPASCHTFRHCFATHLLEDGYDIRTVQELLGHSDVKTTMI 262 Query: 298 YTNV 301 YT+V Sbjct: 263 YTHV 266 >gi|224826550|ref|ZP_03699651.1| integron integrase [Lutiella nitroferrum 2002] gi|224601151|gb|EEG07333.1| integron integrase [Lutiella nitroferrum 2002] Length = 274 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 72/257 (28%), Positives = 111/257 (43%), Gaps = 52/257 (20%) Query: 95 IKSFLKYLK-KRKI--TTESNILNMRNLKKSNSLPRALNEKQALTLVDN-----VLLHTS 146 +++FL +L +R++ +T+S LN N L R L + Q L V V+L T Sbjct: 6 VETFLNHLAVQRQVAASTQSQALNALVFLYENVLTRPLGQMQGLRRVQKRHRVPVVL-TQ 64 Query: 147 HETKWI----DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVP 201 E K + + + L+YG GLR+ E ++L +++ T+ ++ KG K R Sbjct: 65 DEVKTVLSLMEGTCRLMAELMYGAGLRVHECVTLRIKDVDFSTRTISVRNSKGSKDRTT- 123 Query: 202 LLPS----------VRKAILEYYDLC------PFDLNLNIQLP----------LFRGIRG 235 +LP+ +R A DL P L+ + P F Sbjct: 124 VLPAQLGSKLQQHLLRVATQHKEDLARGAGLAPMPDALSRKYPSASSSFAWQYAFPSTAL 183 Query: 236 KPLNPG-----------VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284 +P QR ++ + + H LRHSFATHLL+ G D+R+IQ Sbjct: 184 RPWGDSGRLVRWHTSDTTIQRAFKKAVAQAQIHKHASVHCLRHSFATHLLAAGTDIRTIQ 243 Query: 285 SILGHFRLSTTQIYTNV 301 +LGH L TT IYT+V Sbjct: 244 LLLGHRSLQTTMIYTHV 260 >gi|124010561|ref|ZP_01695187.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134] gi|123982265|gb|EAY23838.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134] Length = 299 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 83/313 (26%), Positives = 132/313 (42%), Gaps = 31/313 (9%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 N+LP + WL+ L G + T + Y R+FL FL E+ I + Sbjct: 2 NSLPLYHYQSYVAGFSGWLRTL----GYAPDTCRKYPRQLREFLHFL-----EETGIVDL 52 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK--RKITTESNILNMRNLKK 121 + + F + +++ S+K S + L ++K R+ T + L + Sbjct: 53 SSVDGAVVECFFTYLQSRP----SIKTGKSLSTTHLLSMQKTLRQFTRYLDALGLPGF-- 106 Query: 122 SNSLPR------ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175 +LPR A + + + L+ + T + R+ A+L L YGCGLR +E Sbjct: 107 --ALPRLRLQGLAAQSLEVFSQAEIDGLYAACGTDFYGLRDQALLALGYGCGLRRAEVSQ 164 Query: 176 LTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGI 233 L ++ + L ++ GKG K R VP+ V + Y L + P L Sbjct: 165 LEVSDLHFKKGWLEVKAGKGAKARSVPMPTKVAAYLYRYVYQARAQLPQSGTTPALLLSW 224 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLS----TTAHTLRHSFATHLLSNGGDLRSIQSILGH 289 R L+ + R+L L S T+ H LRHS ATHL + G L +I LGH Sbjct: 225 RATRLSKQMVSIRFRELVIKAELLSSEDKRTSFHCLRHSIATHLHAAGVSLANIALFLGH 284 Query: 290 FRLSTTQIYTNVN 302 L +T+IYT++ Sbjct: 285 SSLDSTRIYTHLQ 297 >gi|229113245|ref|ZP_04242740.1| Integrase-recombinase [Bacillus cereus Rock1-15] gi|228670271|gb|EEL25619.1| Integrase-recombinase [Bacillus cereus Rock1-15] Length = 390 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/153 (31%), Positives = 68/153 (44%), Gaps = 10/153 (6%) Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 N IL L G RI E + +N+ D + LR+ GKGDK+R + + + + I E Sbjct: 218 NYTILLALASTGARIQELCTARVKNLHYDGKYWLRVTGKGDKVRELFISEHLFQCISEMR 277 Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266 F L+ + PLF RG NP + + + L TAHT R Sbjct: 278 RRRGFSTILDRGDECPLFVNQRGNFYNPKTLSNQVTDMIKKTNLDFLKYRENPVTAHTFR 337 Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298 H+FA + G DL + LGH + TT+IY Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370 >gi|283796718|ref|ZP_06345871.1| integrase/recombinase, phage integrase family [Clostridium sp. M62/1] gi|291075602|gb|EFE12966.1| integrase/recombinase, phage integrase family [Clostridium sp. M62/1] Length = 331 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 69/313 (22%), Positives = 138/313 (44%), Gaps = 43/313 (13%) Query: 8 EIVSFELLKERQNWLQNLEIER---------GLSKLTLQSYECDTRQFLIFLAFYTEEKI 58 E+++ + + +++ N +IE G S+ +L+ Y R L +KI Sbjct: 37 EVITVDCSETKEDDTSNRKIEELFIAAKKVEGCSEKSLKYYASTIRTML--------DKI 88 Query: 59 TIQTIRQLSYTEIRAFI----SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114 Q + +++ ++RA++ +++++ K+ +++R LS SF +L+ +S I Sbjct: 89 GKQVL-EITTDDLRAYLTDYQAEKKSSKVTIDNIRRILS---SFFTWLEDEDYILKSPIR 144 Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174 + +K + ++ +++ + D K R+ A++ +L G+R+ E + Sbjct: 145 RIHKVKSAATIKETYSDESLEKMRD----------KCDSLRDLAMIDMLSSTGMRVGEMV 194 Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234 L +I D+ + GKGDK RIV + + Y + + LF +R Sbjct: 195 RLNRDDIRFDERECVVFGKGDKERIVYFDARTKIHLQNY-----LQSRTDSEPALFVSLR 249 Query: 235 G--KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 + L G + +R+L + L +P H R + AT + G + +Q +LGH R+ Sbjct: 250 SPHRRLTIGGIELRLRELGKRLDIP-KVHPHKFRRTLATMAIDKGMPIEQLQHLLGHQRI 308 Query: 293 STTQIYTNVNSKN 305 TT Y V N Sbjct: 309 DTTMHYAMVKQSN 321 >gi|160903194|ref|YP_001568775.1| integrase family protein [Petrotoga mobilis SJ95] gi|160360838|gb|ABX32452.1| integrase family protein [Petrotoga mobilis SJ95] Length = 306 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 65/247 (26%), Positives = 106/247 (42%), Gaps = 47/247 (19%) Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 + R++K + +KSFL YL + + N K + +P+ L E Q + Sbjct: 73 LSQRTIKLRIVVLKSFLNYLYENGEISGKKYWKDANAKIPSDVPKGLTESQIKVFFSVIE 132 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIV 200 D + LL GLRISEAL L + I+ +D + L I GKG+++R + Sbjct: 133 ----------DKFDKTFYSLLLKTGLRISEALWLEKEQIIFYNDHAELVINGKGNRVRYL 182 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK----------PLNPGVFQR----- 245 + + ++ + + P +G +GK P+ +R Sbjct: 183 KISKQYAEQLITFAEK---------NTP--KGAQGKKYIFSNDNDVPITSRTMERRFKDY 231 Query: 246 ------YIRQLRR--YLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 I QLR Y + ++ T H LRH+ A LL++G +L ++ ILGH +STT Sbjct: 232 VIKANNKIDQLRTKGYNNINYINATPHALRHTCAKRLLNSGKNLEEVRYILGHTTISTTG 291 Query: 297 IYTNVNS 303 IY +S Sbjct: 292 IYVRSDS 298 >gi|156138691|dbj|BAF75922.1| integron integrase [uncultured bacterium] Length = 180 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 41/68 (60%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 +R ++ Q+ I R GL HTLRHSFATHLL G D+R+IQ +LGH + Sbjct: 113 VRRHHIHETTVQKAITDAVRRAGLSKPAGCHTLRHSFATHLLEAGQDIRTIQELLGHSDV 172 Query: 293 STTQIYTN 300 STT IYT+ Sbjct: 173 STTMIYTH 180 >gi|89147679|gb|ABD62698.1| integrase [uncultured bacterium] Length = 163 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 28/59 (47%), Positives = 38/59 (64%) Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 QR +R + G+ T H LRHSFATHLL G D+R++Q ++GH + TT IYT+V Sbjct: 104 LQRAVRAAGQLAGIEKPVTCHMLRHSFATHLLEQGCDIRTVQQLMGHKHVETTMIYTHV 162 >gi|113971550|ref|YP_735343.1| phage integrase family protein [Shewanella sp. MR-4] gi|113886234|gb|ABI40286.1| phage integrase family protein [Shewanella sp. MR-4] Length = 310 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 111/233 (47%), Gaps = 15/233 (6%) Query: 86 RSLKRSLSGIKSFLKY---LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 RS+ R+++ IKS +K + + + ++I ++ N+K L+ +Q L+ L Sbjct: 67 RSINRAMTAIKSIVKVAALMGEADMQQVAHINSIANMKHGAHQGNPLSAEQVTKLL--AL 124 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVP 201 L +T + R AI L G GLR SE +L + ST+++ GKG+K RI+ Sbjct: 125 LSKRQDTYGL--RTLAIFALFLGTGLRRSELAALMLADYDSATSTIKVVAGKGNKSRILF 182 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI--RGKPLNPGVFQRYIRQLRRYLGLPLS 259 L V + ++ + ++ L I GI +P++ R ++ +G+ + Sbjct: 183 LPNWVEQHVIAWLNVRKMQLGPLICHCRTTGIIVHYRPVSQDALYRLVKDKLGDIGV-MG 241 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 + H LR +F T LL D+ +++ + GH +STT IY K G +M E Sbjct: 242 ASPHDLRRTFITRLLEQNVDINTVRQMAGHADISTTTIY----DKRGDAFMRE 290 >gi|288561589|ref|YP_003428995.1| site-specific tyrosine recombinase XerS [Bacillus pseudofirmus OF4] gi|288548221|gb|ADC52103.1| site-specific tyrosine recombinase XerS [Bacillus pseudofirmus OF4] Length = 368 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 81/333 (24%), Positives = 149/333 (44%), Gaps = 61/333 (18%) Query: 32 SKLTLQSYECDTRQFLIFL--AFYTEEK----ITIQTIRQLSYTEIRAF----------I 75 S LTL +Y D ++FL +L +E K ++++T+ LS E +AF + Sbjct: 36 SSLTLFNYARDYQEFLNWLISEGISEAKDIKDVSVETLANLSLQEAQAFFKTMLRRKYLV 95 Query: 76 SKRRTQ--KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM-----RNLKKSNSLPRA 128 SK+ + ++ ++++ R S ++S KYL T E+ N RN+ + + + Sbjct: 96 SKKSEEYKQVQEKTVNRMKSALRSLFKYL-----TVEAEAENHEPYFHRNVMQKIPVHKV 150 Query: 129 LNEKQ-------ALTLVDNV---LLH----------TSHETKWID---ARNSAILYLLYG 165 + + + VDN LH T +T++ R+ AIL L G Sbjct: 151 IESRSERAANMTSKIFVDNADADFLHYVQKEYEQTLTKGQTRYFKRDKERDFAILSLFLG 210 Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL----CPFDL 221 G+R++E +L ++ Q +R+ KG+K V ++P + + Y ++ D Sbjct: 211 SGIRLNELSNLKLGDVDFTQRLIRVIRKGNKKDSVTVIPEALEDLEAYLEIRNERYNADS 270 Query: 222 NLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280 + N + + +G G PL+ Q+ I + +S H LRH++AT+L GD+ Sbjct: 271 DPNAYVFITKGKNGYSPLSNRAIQKIIAKYTESYDKRMS--PHKLRHTYATNLAEQTGDI 328 Query: 281 RSIQSILGHFRLSTTQIYTNVN---SKNGGDWM 310 + + LGH T+ +Y N + +K + M Sbjct: 329 PLVMTQLGHSSPETSLLYINTSLEKAKKAAEEM 361 >gi|331270979|ref|YP_004385690.1| putative integrase/recombinase [Clostridium botulinum BKT015925] gi|329127371|gb|AEB77315.1| putative integrase/recombinase, putative [Clostridium botulinum BKT015925] Length = 272 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 68/272 (25%), Positives = 127/272 (46%), Gaps = 41/272 (15%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRSLKRSLS 93 T+ +Y+ D ++F+ ++ + K+ + TI E+R F + ++ +++ +++ Sbjct: 21 TIYTYKNDIKRFI---EYFQKNKLEVNTI------ELRKFKDYLLQGLQLSPKTVNKNIV 71 Query: 94 GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153 I+ +L ++ + NI M ++ L L +A+ ++ SH D Sbjct: 72 AIRKYLDFIH----INDVNI-KMIKIQDQGFLDDILTNSEAMRMIKEA--DKSH-----D 119 Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213 R A + LY G+R+SEA+S+ ++I D+ ++RI GKG K R V L+P + I Sbjct: 120 LRAKAFICTLYYTGMRVSEAISVLVKDI--DEDSIRILGKGKKYRTV-LIPKKLQRIWGD 176 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY--IRQLRRYLGLPL----STTAHTLRH 267 Y + +N LF G RG G+ R+ + +++Y G H RH Sbjct: 177 Y----MTVRVNNSDKLFTGQRG-----GI-SRFTALNMVKKYGGKAKVKKDKVYNHAFRH 226 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 F +L+ G + ++ + GH + TT IYT Sbjct: 227 LFCMNLVDKGIPIDVVKDLAGHASILTTNIYT 258 >gi|91787470|ref|YP_548422.1| phage integrase [Polaromonas sp. JS666] gi|91696695|gb|ABE43524.1| phage integrase [Polaromonas sp. JS666] Length = 286 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 75/149 (50%), Gaps = 10/149 (6%) Query: 159 ILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYD 215 +L +Y GLR+SEA +L +I D+ +R+ GKG K R L P++ + Y Sbjct: 123 LLQTIYASGLRVSEACALRVSDIDSAPDRMCIRVACGKGGKGRYSILSPTLLDLLRAYVR 182 Query: 216 LCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 N LF G +P+N + QR R + + S HTLRH FATHLL Sbjct: 183 ------NYRPTTWLFANASGTQPMNIEIAQRAYHAARAHALITKSGGIHTLRHCFATHLL 236 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 G DL +IQ +LGH ++TT Y ++ S Sbjct: 237 EGGVDLFTIQKLLGHGHIATTGRYLHLIS 265 >gi|296163716|ref|ZP_06846430.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295886037|gb|EFG65941.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 418 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 67/278 (24%), Positives = 121/278 (43%), Gaps = 15/278 (5%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 RGL+ T +++ R FL+ + +I + R++ ++ FI +R ++ S Sbjct: 136 RGLAASTRRNHRDCVRDFLV--DQFGGHRIDM---RRIKPADVLHFIVER-SKGHTPASA 189 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALTLVDNVLLHTS 146 S ++ +L++ + TE+ I + + LP+ L + Q + T+ Sbjct: 190 GTIASSVRVYLRFRQFSGDHTEALIAAVPKVAVWSMARLPKLLTQAQLAQFLSAFDTQTA 249 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPS 205 R+ A+ LL GLR+ E +L ++ + TLRI+ K + ++PL Sbjct: 250 SGR-----RDYAMARLLVELGLRVGEVAALQLADVDWHEGTLRIRATKCKRTDLLPLPVQ 304 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-HT 264 +A+ +Y + R +P+ P V IR G P S+ H Sbjct: 305 TGRALFDYVRFGRPQTSSRALFVRHRAPFDRPVTPAVVCSAIRLAYARCGWPSSSMGTHL 364 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 LRH+ A+ +L NG L+ I +L H ++TT IY V+ Sbjct: 365 LRHTAASRMLGNGASLKDIADVLRHRSINTTMIYAKVD 402 >gi|227461214|gb|ACP39551.1| putative integron integrase [uncultured microorganism] Length = 294 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 41/64 (64%) Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L+ QR ++Q R G+ + HT RH FATHLL +G D+R++Q +LGH + TT I Sbjct: 231 LHEQTVQRAVKQAVRRAGIQQPASCHTFRHCFATHLLEDGYDIRTVQELLGHSDVKTTMI 290 Query: 298 YTNV 301 YT+V Sbjct: 291 YTHV 294 >gi|298243705|ref|ZP_06967512.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297556759|gb|EFH90623.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 332 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 62/254 (24%), Positives = 123/254 (48%), Gaps = 19/254 (7%) Query: 56 EKITIQTIRQ-LSYT-EIRAFISKRRT----QKIGDRSLKRSLSGIKSFLKYLKKRKITT 109 EKIT+ +R+ L Y E + + ++RT + D ++K ++ K F + + ++ Sbjct: 47 EKITVLHLRECLRYMIETPSEVIRQRTFGKKSNLADSTMKTYVTNWKVFFNWCYQEELID 106 Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169 ++ + + + + ++D + L T + R+ IL LL G+R Sbjct: 107 SDPSARLKTPRPEKRVLKTFTSEHIYKMLDTLDLSTD-----MGFRDYVILLLLLDTGIR 161 Query: 170 ISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN---IQ 226 +SE +L +++ D + ++++GKG K R V + P + K + +Y N + I Sbjct: 162 LSEIGTLLLEDVHD--TYIKVRGKGRKEREVGIHPDLGKLLWKYVHKYRHPGNPDEPKIF 219 Query: 227 LPLFRGIRGKPLN-PGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQ 284 + + +GK ++ PGV + + +LR LG + + HT RH+FA +++GGD+ + Sbjct: 220 IDCTKQGKGKAISGPGV-KGILYRLRLALGFKDVRLSPHTFRHTFAKMYMAHGGDIFKLS 278 Query: 285 SILGHFRLSTTQIY 298 +GH + TQ Y Sbjct: 279 REMGHSSVRITQRY 292 >gi|166031854|ref|ZP_02234683.1| hypothetical protein DORFOR_01555 [Dorea formicigenerans ATCC 27755] gi|166028307|gb|EDR47064.1| hypothetical protein DORFOR_01555 [Dorea formicigenerans ATCC 27755] Length = 361 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 70/288 (24%), Positives = 123/288 (42%), Gaps = 34/288 (11%) Query: 38 SYECDTRQFLIFL-------AFYTEEKITIQTIRQLSYTEIRAF-----ISKRRTQKI-- 83 +Y D R F FL YT ++ +Q + ++ +I + + KR ++ Sbjct: 57 NYAYDIRVFFHFLLENNPIYKNYTMDQFRVQDLERIEPVDIEEYMEYLKVYKREDNEMIT 116 Query: 84 -GDRSLKRSLSGIKSFLKY-LKKRKITTESNIL-NMRNLKKSNSLPRALNEKQALTLVDN 140 G+R LKR +S ++SF Y K + I T +L +M L + ++E L+D Sbjct: 117 NGERGLKRKMSALRSFYSYYFKHQYIATNPTLLVDMPKLHDKAIIRLDIDE--VAMLLDY 174 Query: 141 VLLHTSHETKWIDA-------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 V H T A R+ AIL LL G G+R+SE + L ++ + + + K Sbjct: 175 VESAGEHLTGQALAYYQKTKNRDLAILTLLLGTGIRVSECVGLNLTDVDFKNNGITVTRK 234 Query: 194 GDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 G +V V A+ Y + + P + + LF + K + + ++ Sbjct: 235 GGSQMVVYFGDEVADALENYIEADRKVITPLSGH---EEALFLSTQRKRMGVQAIENMVK 291 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + R + T H LR ++ T L GD+ + +LGH ++TT+ Sbjct: 292 KYARQVTPNKKITPHKLRSTYGTSLYKETGDIYLVADVLGHKDVNTTK 339 >gi|223369792|gb|ACM88765.1| integrase [uncultured bacterium] Length = 163 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 32/42 (76%) Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T HT RHSFATHLL NG D+R++Q +LGH + TTQIYT V Sbjct: 121 VTCHTFRHSFATHLLQNGCDIRTVQELLGHTDVKTTQIYTRV 162 >gi|220930346|ref|YP_002507255.1| integrase family protein [Clostridium cellulolyticum H10] gi|220000674|gb|ACL77275.1| integrase family protein [Clostridium cellulolyticum H10] Length = 307 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 54/217 (24%), Positives = 98/217 (45%), Gaps = 19/217 (8%) Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL---LHTSHETKW 151 +K F YLK+ I T + I+ LP+ + + + + +VL L ++ + Sbjct: 77 LKCFFDYLKEEDIITSNPIIK---------LPKRKAQDKIIDIPVDVLQQLLALPDKSSF 127 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI---RIVPLLPSVRK 208 + ++ L+ CG+R EAL+L + + + I + K R +PL + Sbjct: 128 TGLVDHCLILLMMDCGIRPKEALTLKVSDFDIKHNCVTIPAELAKTGVSRTLPLSIETVR 187 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 I + P D N N+ P+F + L+ V R ++ + LG + T ++LRH Sbjct: 188 PITKVISSRPKDWNNNV--PVFCSCSAETLDSEVLSRRFKRYSQKLGTDI--TPYSLRHC 243 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 FA + L NGG+ +Q I+GH T+ Y ++ + Sbjct: 244 FALYYLRNGGNSLMLQKIMGHTTQDMTRKYVALSDTD 280 >gi|229004115|ref|ZP_04161916.1| Integrase/recombinase [Bacillus mycoides Rock1-4] gi|228756976|gb|EEM06220.1| Integrase/recombinase [Bacillus mycoides Rock1-4] Length = 306 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 66/273 (24%), Positives = 116/273 (42%), Gaps = 11/273 (4%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 LS T+QSY +F F + E I + IR+ + + K R + R+ K Sbjct: 18 NLSPRTIQSYMATLHEFQEFCS--ERELIDTRDIREATVKSYLMYCQKTRGNNVVTRNTK 75 Query: 90 RSLSGIKSFLKYLKKRKITTE-SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 L +K F YL+ I +E N + L K + ++ ++ + Sbjct: 76 --LHHLKIFFNYLQHEDIISEKENPIRKMKLAKEDIKIEVFQDEHIKQMLRYYRRLKARN 133 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 + R+ I+ L G G R+ E +++ + T+ + GK K + VPL + K Sbjct: 134 KSFYAYRDHTIIIFLLGTGSRLGELINIRWSELDLVNQTVTLFGKARKQQTVPLTNKLVK 193 Query: 209 AILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTL 265 EY +L +LP +F GK ++ + ++L++ + + +AHT Sbjct: 194 EFCEYKVFMERELG---RLPEYVFTTREGKQMSSNSVKLIFKRLKQVMNFSDVRLSAHTF 250 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 RH+FA L G D+ ++Q +L H L T+ Y Sbjct: 251 RHTFAHRCLMAGMDVFTLQRMLRHSNLRMTERY 283 >gi|89147474|gb|ABD62597.1| integrase [uncultured bacterium] Length = 163 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 44/69 (63%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 IR ++ Q+ +++ G+ + + HT RHSFATHLL G D+R+IQ +LGH + Sbjct: 94 IRRHHIDESSLQKAVKRAVILAGVEKNVSCHTFRHSFATHLLEAGRDIRTIQELLGHKDV 153 Query: 293 STTQIYTNV 301 STT IYT+V Sbjct: 154 STTMIYTHV 162 >gi|145594863|ref|YP_001159160.1| phage integrase family protein [Salinispora tropica CNB-440] gi|145304200|gb|ABP54782.1| phage integrase family protein [Salinispora tropica CNB-440] Length = 322 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 62/230 (26%), Positives = 99/230 (43%), Gaps = 16/230 (6%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL----NEKQALTLVDNVL 142 S+ R+ S SF +L + + + + + P+ L +Q LT V V Sbjct: 74 SVHRAWSTWNSFFVFLVADGVVAGNPMPAVGRPRAPLPRPKPLRGADTPEQLLTAVARV- 132 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIV 200 W R+ A+L L GLR++E L+L ++ + L + GKG + R+V Sbjct: 133 -DGRQRDPWPQ-RDLAVLALALCGGLRLAEMLALRVASLAGRVGERRLDVAGKGGRPRVV 190 Query: 201 PLLPSVRKAILEYYDLCP---FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL- 256 P+ P + + + +Y + C + PL RG PL G Q + R G+ Sbjct: 191 PVEPELDQVLADYLESCRRRFGSATVRPDAPLLMDRRGGPLRRGGLQYLVDSCFRRAGIG 250 Query: 257 ---PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 P H LRH+FAT L +G I +LGH L+++Q Y V + Sbjct: 251 DRVPQGARLHALRHTFATRLAEDGASAAEIMRLLGHVSLASSQAYIEVTA 300 >gi|312876294|ref|ZP_07736280.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A] gi|311796940|gb|EFR13283.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A] Length = 314 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 63/238 (26%), Positives = 106/238 (44%), Gaps = 31/238 (13%) Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 +Q I + L+ +K+F K+ E NIL KSN L L +K+A + Sbjct: 65 SQPIKPATYNLRLTYLKAFFKW------CVEENIL------KSNPL-EGLPKKKAEGRIV 111 Query: 140 NV-------LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-- 190 N+ LL + + R+ A++ L G+R EA SL ++ D TL++ Sbjct: 112 NIDTEILEKLLKLPDKNTFCGLRDYALILLALDTGIRPKEAFSLLIEHF--DFKTLQVFI 169 Query: 191 ---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 K R++P+LP A+ + + + ++P+F + G+PL ++ I Sbjct: 170 PSNAAKTRVSRVLPILPVTANAVKKL--IAARHPEWDEKVPVFCTVTGRPLTSDIWHGRI 227 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + LG+ + + LRH+FA L NGG S+Q LGH L T+ Y + + Sbjct: 228 EMYSKKLGVKIR--PYDLRHTFALLYLKNGGYELSLQKTLGHTTLEMTKRYVHFTQND 283 >gi|16519921|ref|NP_444041.1| DNA integration/recombination/inversion protein [Sinorhizobium fredii NGR234] gi|2497420|sp|P55636|Y4RC_RHISN RecName: Full=Putative integrase/recombinase y4rC gi|2182600|gb|AAB92469.1| DNA integration/recombination/inversion protein [Sinorhizobium fredii NGR234] Length = 332 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 84/287 (29%), Positives = 114/287 (39%), Gaps = 16/287 (5%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RR 79 +LQ L +R S T+ SY RQ L F + + ++ I AF+ Sbjct: 15 FLQRLMQQRQASPHTISSYRDTFRQLLKFAERRLRKPPSRLNFEEIDAPLIVAFLDDLEN 74 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 Q I RS L+ I SF +Y +I S + S R L VD Sbjct: 75 RQGISVRSRNLRLTAIHSFFRY-AAFEIPEHSAQIQRVLAIPSKRFTRTLVNFLTRPEVD 133 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIR 198 LL + W R+ A L + GLR+SE L ++ + LR+ GKG K R Sbjct: 134 -ALLAAPDRSTWSGRRDHAFLLVAVQTGLRLSEITGLKRDDLFFGTGAHLRVIGKGRKER 192 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 P S A+L + P + I LF RG+ L+ Q Y+ R + + Sbjct: 193 CTPFAKST-TAVLRNWLKEPQRGDQGI---LFPSARGERLSVHGVQ-YMLNKHRQIASAM 247 Query: 259 S-------TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 S T H LRH+ A LL G D I LGH + TTQIY Sbjct: 248 SPSLEGKRVTVHRLRHTMAMDLLQAGVDRAVIALWLGHESVETTQIY 294 >gi|293372407|ref|ZP_06618791.1| phage integrase, N-terminal SAM domain protein [Bacteroides ovatus SD CMC 3f] gi|292632590|gb|EFF51184.1| phage integrase, N-terminal SAM domain protein [Bacteroides ovatus SD CMC 3f] Length = 330 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 66/283 (23%), Positives = 125/283 (44%), Gaps = 36/283 (12%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS----KRRTQKIGD 85 G S+ TL Y + L+ L+ I ++ ++IRA++S + ++ K+ Sbjct: 67 GCSEKTLAYYRNTIERLLLTLSV---------AICHITTSDIRAYLSDYQEEHQSSKVTI 117 Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 +++R S SF +L+ +S + + +K + + L+++Q L D+ Sbjct: 118 DNMRRIFS---SFFAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQLRDS----- 169 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 + R+ A++ +L G+R+ E + L ++I + + GKG+K R+V Sbjct: 170 -----CTNKRDLALIDILSSTGIRVGELVKLNREDIDFHERQCVVFGKGNKERVVYFNAR 224 Query: 206 VRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 + + +Y D D L +++ P R L + IR+L + L +P Sbjct: 225 TKLHLQQYLDERTDDNPALFVSLHSPHTR------LTISGVEVRIRKLGKSLSMP-KVHP 277 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 H R + AT + G + +Q +LGH R+ TT Y VN N Sbjct: 278 HKFRRTLATMAIDKGMPIEQVQRLLGHVRIDTTLHYAIVNQNN 320 >gi|94442308|dbj|BAE93653.1| integron integrase [uncultured bacterium] Length = 238 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 41/60 (68%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 V Q+ +R+ + L + T HT RHSFATHLL +G D+R+IQ +LGH + TT IYT+V Sbjct: 178 VIQKEVRRSVQALKMSKRVTCHTFRHSFATHLLESGSDIRTIQELLGHADVRTTMIYTHV 237 >gi|331090722|ref|ZP_08339570.1| hypothetical protein HMPREF9477_00213 [Lachnospiraceae bacterium 2_1_46FAA] gi|330399991|gb|EGG79647.1| hypothetical protein HMPREF9477_00213 [Lachnospiraceae bacterium 2_1_46FAA] Length = 283 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 130/293 (44%), Gaps = 35/293 (11%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTE--EKITIQTIRQLSYTEIRAFIS 76 + +L+ LE + L +S C FL + + E++T Q ++R F+ Sbjct: 3 EKYLEQLEEAGKIRNLKERSINCYKNYVSYFLKYQAKPPEELTCQ--------DVRNFLL 54 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 ++ + + +L S I+ F + N+L++ L ++PR + E + T Sbjct: 55 AKKEEGLKATTLNLYNSSIRFFYR-----------NVLHI--LWDDITVPRMILEHKLPT 101 Query: 137 L--VDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + VD + LL + K+ A+ +Y G+R+SE + L +I + ++ Sbjct: 102 VLTVDEIDRLLEAVDDIKY-----RAMFATMYSSGMRVSEVIHLHYDDISRSNMQIHVRD 156 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 +++ +L IL Y F+ + G L ++ +R+ Sbjct: 157 TKNRMDRYTILSKRCLDILTQY---WFEKGRPRGILFPNKFTGNYLTVSTLEQVMRRAVS 213 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 LP T H LRHSFATHL+ G + ++IQ++LGH +T++Y +V++K+ Sbjct: 214 DAELPKKATPHCLRHSFATHLMEQGVERQNIQALLGHRDPKSTEVYLHVSNKS 266 >gi|257876970|ref|ZP_05656623.1| integrase/recombinase [Enterococcus casseliflavus EC20] gi|257811136|gb|EEV39956.1| integrase/recombinase [Enterococcus casseliflavus EC20] Length = 289 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 69/280 (24%), Positives = 134/280 (47%), Gaps = 28/280 (10%) Query: 26 EIERGLSKLTLQSYECDTRQFL-IFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 E RG+S+ T++ ++ +FL +F F +E+I + ++ IR F+ + + Sbjct: 17 EKARGISQKTIKKHQ----KFLKLFFDFLKKEQIYF--VEDVTPKSIRQFMLMKLEEGCA 70 Query: 85 DRSLKRSLSGIKSFLKY-LKKRKITTESN-ILNMRNLKKSNSLPRALNE---KQALTLVD 139 + + L I+++ KY + + + + N + ++ +K+ + + N+ K+ L + Sbjct: 71 ETYVNSHLRSIRAYFKYCVDEDYVRYDRNPCMRVKWVKERKVIIQTFNDMEIKEMLKVAK 130 Query: 140 NVLL---------HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 + HT ++TK+ + R+ +L +L GLRISE ++L +I + + + Sbjct: 131 KLTFFKPQKMDKQHTGYQTKFTNQRDYLLLLILIDTGLRISEVMNLKDVHITNKELFVE- 189 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCP--FDLN--LNIQLPLFRGIRGKPLNPGVFQRY 246 GKG K RIV P + K ++Y + F+ N NI +F GK N + +R Sbjct: 190 NGKGKKDRIVHCSPLIYKEYIKYKRVANSFFEYNEIENIDNYVFLTREGKQYNYILAERA 249 Query: 247 IRQLRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQ 284 I ++ + + + H+ RH FA L+ NG D+ IQ Sbjct: 250 IIKIGNQCEIRKSIRVSPHSFRHYFAQKLVRNGTDIYRIQ 289 >gi|223369840|gb|ACM88789.1| integrase [uncultured bacterium] Length = 163 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 40/60 (66%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 QR +RQ R G+ + HTLRHSFATHLL +G +R++Q +LGH + TT IYT+V Sbjct: 103 ALQRAVRQALRKAGIVKPGSVHTLRHSFATHLLESGYGIRTVQELLGHADVKTTMIYTHV 162 >gi|156138687|dbj|BAF75920.1| integron integrase [uncultured bacterium] Length = 181 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 41/68 (60%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 +R ++ Q+ I R GL HTLRHSFATHLL G D+R+IQ +LGH + Sbjct: 114 VRRHHIHETTVQKAITDAVRRAGLSKPAGCHTLRHSFATHLLEAGQDIRTIQELLGHSDV 173 Query: 293 STTQIYTN 300 STT IYT+ Sbjct: 174 STTMIYTH 181 >gi|94442296|dbj|BAE93647.1| integron integrase [uncultured bacterium] Length = 162 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 28/74 (37%), Positives = 46/74 (62%) Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 P +R + Q+ +++ G+ + + H+LRHSFATHL+ +G D+R++Q +L Sbjct: 88 PRSGAVRRHHIGESSMQKAVKRALATAGIEKNASCHSLRHSFATHLIESGTDIRTVQELL 147 Query: 288 GHFRLSTTQIYTNV 301 GH +STT IYT+V Sbjct: 148 GHKDVSTTMIYTHV 161 >gi|89147472|gb|ABD62596.1| integrase [uncultured bacterium] Length = 163 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 44/69 (63%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 +R +P ++ I++ +GL TAHT RHS AT LL +G DLR+IQ +LGH + Sbjct: 94 LRRHHFHPTCIRKAIKKQVTMIGLHKRVTAHTFRHSLATRLLEHGYDLRTIQELLGHADI 153 Query: 293 STTQIYTNV 301 STT IYT+V Sbjct: 154 STTAIYTHV 162 >gi|302539285|ref|ZP_07291627.1| integrase [Streptomyces sp. C] gi|302448180|gb|EFL19996.1| integrase [Streptomyces sp. C] Length = 356 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 46/130 (35%), Positives = 64/130 (49%), Gaps = 19/130 (14%) Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCP---FDLNLN-IQLPLF-----------RGIRG 235 QG+G K R+VPL+ R +LE++ P FD +N + PLF R + Sbjct: 211 QGRGKKERLVPLINGARD-LLEWWVTGPRWEFDDKVNDPRAPLFPSERRYGDGSSRAVTD 269 Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 L G+ + +R L G T H LRH A+ L NG D+ +IQ ILGH L+TT Sbjct: 270 DALRTGLAEAVVRHLPHQAG---QLTPHVLRHFAASDLYRNGMDVVAIQEILGHEWLNTT 326 Query: 296 QIYTNVNSKN 305 IY +V + Sbjct: 327 MIYVHVEKSH 336 >gi|254436138|ref|ZP_05049645.1| hypothetical protein NOC27_3201 [Nitrosococcus oceani AFC27] gi|207089249|gb|EDZ66521.1| hypothetical protein NOC27_3201 [Nitrosococcus oceani AFC27] Length = 87 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 32/73 (43%), Positives = 45/73 (61%) Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R ++ + + I+ R G+ +AHT RHSFATHLL G D+R+IQ +LGH L Sbjct: 3 RRHHIDQSLINKAIKAAVRQAGITKRVSAHTFRHSFATHLLQRGIDIRTIQDLLGHRDLE 62 Query: 294 TTQIYTNVNSKNG 306 TT IYT+V ++ G Sbjct: 63 TTMIYTHVLNQGG 75 >gi|157737437|ref|YP_001490120.1| integrase/recombinase XerD [Arcobacter butzleri RM4018] gi|157699291|gb|ABV67451.1| integrase/recombinase XerD [Arcobacter butzleri RM4018] Length = 350 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 47/145 (32%), Positives = 75/145 (51%), Gaps = 13/145 (8%) Query: 166 CGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSV-RKAILEYYDL--CPFD 220 G+R+SE L+L ++I D+ L+I+GKG+K R+V + S+ K + + D+ C D Sbjct: 204 TGIRVSEILNLRIKDIFKEDNVYMLQIRGKGNKPRVVMIKSSIIEKELQNWLDMRVCNSD 263 Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGD 279 L L +G+ L R + + G+ AH LRHSFAT L D Sbjct: 264 L-------LVCNQKGERLTQAYISRVVENILISAGIRKEKNGAHMLRHSFATLLYQKHHD 316 Query: 280 LRSIQSILGHFRLSTTQIYTNVNSK 304 L +Q LGH ++T++IYT+ + + Sbjct: 317 LILVQEALGHADINTSRIYTHFDKE 341 >gi|13272355|gb|AAK17117.1|AF302086_1 DNA integrase IntI [Pseudomonas aeruginosa] Length = 317 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 73/298 (24%), Positives = 121/298 (40%), Gaps = 58/298 (19%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 33 TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 83 LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207 + LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191 Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +A + F + + P +R Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 + FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTT 309 >gi|218666422|ref|YP_002425617.1| tyrosine recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] gi|218518635|gb|ACK79221.1| tyrosine recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] Length = 301 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 73/301 (24%), Positives = 121/301 (40%), Gaps = 41/301 (13%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT---IQTIRQLSYTEIRAFISK 77 W+ SK T++ Y + +FL FL F E+I+ I +R+ T + Sbjct: 14 WISGPNFRNPYSKATIRIYGRNVHRFLEFLDFDGVERISEASIHLVRKFVMTGQSGGTAP 73 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLK------------KRKITTESNILNMRNLKKSNSL 125 TQ + + F YL+ R + + N+ K+ + Sbjct: 74 VNTQNV-------RTGALALFFDYLESTEEHGPFSGNPARALIEDQKHKKGGNVGKATAR 126 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD- 184 R + E + D + S + R++A++ ++ GLR SE +L P + + Sbjct: 127 LRPVLEWDDM---DRLQYEASKQETIAGIRDAALIGFIFDTGLRASEICAL-PHSAAEYY 182 Query: 185 -QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-----PLFRGIRGKPL 238 Q LR+ GKGDK R+V P E+ D + ++ LF G L Sbjct: 183 FQGRLRVIGKGDKERLVRFTP-------EHADRLRAWIRTRARVVSKSDALFLTDEGNAL 235 Query: 239 NPGVFQRYIRQLRRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + V +R+L G+ + H LRH+ A+ L+ G DLR +Q +GH + TT Sbjct: 236 STQVLYMIVRRLLDRAGIQKAQQGPHLLRHTAASRWLAKGMDLRQVQENMGHSNIGTTSK 295 Query: 298 Y 298 Y Sbjct: 296 Y 296 >gi|307131117|ref|YP_003883133.1| Integrase/recombinase [Dickeya dadantii 3937] gi|306528646|gb|ADM98576.1| Integrase/recombinase [Dickeya dadantii 3937] Length = 139 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 6/100 (6%) Query: 223 LNIQLP-LFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280 +N P LF + G + L P + R G+ + H RH+ ATH+L NG DL Sbjct: 7 VNPHCPALFVALDGVEGLTPNGITNLVSHYIRASGIAKWGSCHLFRHAMATHMLENGADL 66 Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 R IQ++LGH + +TQIYT V+ + + ++ THP+ Sbjct: 67 RWIQAMLGHASVESTQIYTQVSIRA----LQAVHASTHPA 102 >gi|308274017|emb|CBX30616.1| hypothetical protein N47_E41280 [uncultured Desulfobacterium sp.] Length = 165 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 28/52 (53%), Positives = 39/52 (75%) Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 G+ + ++H RHSFATHLL +G D+R+IQ +LGH +STT IYT+V +K G Sbjct: 101 GITKNVSSHAFRHSFATHLLEDGYDIRTIQELLGHKDVSTTMIYTHVLNKGG 152 >gi|223369856|gb|ACM88797.1| integrase [uncultured bacterium] Length = 163 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 31/64 (48%), Positives = 42/64 (65%) Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L+ QR + + +G + HTLRHSFATHLL NG D+R++Q +LGH +STT I Sbjct: 99 LSEDSLQRAVEKSAGEIGNNKRGSCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMI 158 Query: 298 YTNV 301 YT+V Sbjct: 159 YTHV 162 >gi|23320701|gb|AAN16072.1| integron integrase [uncultured bacterium] Length = 292 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 79/281 (28%), Positives = 116/281 (41%), Gaps = 79/281 (28%) Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK---ITTESNILN--------------- 115 F SKR ++G SGI +F+ +L + +T+S N Sbjct: 31 FHSKRHPSEVGP-------SGIVAFVNHLAANQQVAASTQSQAFNALLFLYRDVLDVEIG 83 Query: 116 ----MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171 +R +++ LP L+ + V +VLL + I LLYG GLRI+ Sbjct: 84 ALVGLRRIQRLQRLPVVLSIDE----VRSVLLQMVGTPRLIAE-------LLYGTGLRIT 132 Query: 172 EALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDL-------------- 216 EA++L ++I T+ ++G KG K R LLPS + L + L Sbjct: 133 EAMTLRIKDIDFAARTITVRGGKGGKDRAT-LLPSKLREPLHRHVLRVLALHKQDCLQGR 191 Query: 217 --CPFDLNLNIQLPLF------------RGIRGKP---------LNPGVFQRYIRQLRRY 253 P L+ + PL R IR P + + QR R Sbjct: 192 GHAPLPGALHRKYPLASRNPSWQFVFPSRVIRNCPESGRQLRWHASETMVQRAFRNTLAL 251 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 + + HTLRHSFATHLL++G D+R+IQ +LGH L T Sbjct: 252 AEVRKHASVHTLRHSFATHLLADGTDIRTIQLLLGHRSLKT 292 >gi|124387997|gb|ABN10350.1| unknown orf/DNA integrase fusion protein [Pseudomonas aeruginosa] Length = 281 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 31/66 (46%), Positives = 41/66 (62%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 200 TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 259 Query: 302 NSKNGG 307 G Sbjct: 260 LKVGGA 265 >gi|94442290|dbj|BAE93644.1| integron integrase [uncultured bacterium] Length = 162 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 28/74 (37%), Positives = 46/74 (62%) Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 P +R + Q+ +++ G+ + + H+LRHSFATHL+ +G D+R++Q +L Sbjct: 88 PRSGAVRRHHIGESSMQKAVKRALATAGIEKNASCHSLRHSFATHLIESGTDIRTVQELL 147 Query: 288 GHFRLSTTQIYTNV 301 GH +STT IYT+V Sbjct: 148 GHKDVSTTMIYTHV 161 >gi|89147494|gb|ABD62607.1| integrase [uncultured bacterium] Length = 163 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 30/58 (51%), Positives = 39/58 (67%) Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 QR I+ R + + HTLRHSFATH L NG D+R++Q +LGH +STT IYT+V Sbjct: 105 QRAIKMALRKADIIKPASTHTLRHSFATHFLENGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|307721075|ref|YP_003892215.1| integron integrase [Sulfurimonas autotrophica DSM 16294] gi|306979168|gb|ADN09203.1| integron integrase [Sulfurimonas autotrophica DSM 16294] Length = 338 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 76/178 (42%), Gaps = 41/178 (23%) Query: 162 LLYGCGLRISEALSLTPQNI---------MDDQS----------------TLRIQGKGDK 196 L+YGCGLR+SE L++ ++I D +S +++Q D Sbjct: 131 LMYGCGLRMSEVLNIRIKDIDFGFNKLYIWDSKSLKDKTIPLPLKLKEELLVQVQRVQD- 189 Query: 197 IRIVPLLPSVRKAILEY-----YDLCPFDLNLNIQLPLFRGIRGKP---------LNPGV 242 I + L L + Y ++ P+ R I P ++P Sbjct: 190 IHVKDLEDGYGSVYLPFAYEKKYPNAKYETKWQFLFPM-RNISKDPRSNLKRRHHIHPQT 248 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 R I+ + L T+H RHS+ATHLL G DLRSIQ +LGH + TT IYT+ Sbjct: 249 LGRNIKIASKKANLNKRVTSHIFRHSYATHLLQTGIDLRSIQELLGHKSVETTMIYTH 306 >gi|240169979|ref|ZP_04748638.1| integrase family protein [Mycobacterium kansasii ATCC 12478] Length = 359 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 16/175 (9%) Query: 145 TSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG----------- 192 TS W+ A R++A+ + YG GLR E L + + + ++ G Sbjct: 163 TSGRKGWLAAFRDAALFKVCYGFGLRRREVAMLDVADFTANPAAPQLGGLGVCQVRFGKA 222 Query: 193 -KGDKIR---IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 +G R + ++P +A+ +Y L L+ RG ++P Sbjct: 223 MRGSPPRRRSVAAVMPWALEALEQYLTLVRPRYAAAAHPALWLTERGGRISPRQVDDRFA 282 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + R GLP + H LRHS+ +HL+ +G D +Q +GH STT +YT V + Sbjct: 283 RWRAAAGLPTELSVHCLRHSYVSHLIEDGVDPLFVQQQVGHSWASTTAVYTQVGA 337 >gi|32471173|ref|NP_864166.1| integrase [Rhodopirellula baltica SH 1] gi|32396875|emb|CAD71843.1| integrase [Rhodopirellula baltica SH 1] Length = 195 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 10/147 (6%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC 217 I +Y CGLR + L PQ++ D+ LR+ KG + R VPL + A ++ Sbjct: 23 IFRAMYSCGLRGVDVRHLRPQDVDADRMMLRVCTTKGHRQREVPLPQATLDAFRAHW--- 79 Query: 218 PFDLNLNIQLPLFR-----GIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFAT 271 N N P + +P++ QR ++ LG S T HTLRHS+AT Sbjct: 80 ATHRNPNWLFPATQRNTPASKADQPISARTIQRGFTKVTESLGWQDSGLTPHTLRHSYAT 139 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIY 298 +L G +L+ +Q LGH L T++Y Sbjct: 140 AMLDAGVNLKVLQGYLGHKNLQATEVY 166 >gi|325661577|ref|ZP_08150201.1| hypothetical protein HMPREF0490_00935 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472104|gb|EGC75318.1| hypothetical protein HMPREF0490_00935 [Lachnospiraceae bacterium 4_1_37FAA] Length = 354 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 72/300 (24%), Positives = 129/300 (43%), Gaps = 36/300 (12%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLA----FYTEE---KITIQTIRQLSYTEIRAFI---- 75 +E S T SY D R F FL Y + + T++ + QLS +I ++ Sbjct: 38 MEPTTSAKTRISYAYDIRTFFYFLVECNPLYRDRSTTQFTLEDLDQLSSVDIEEYLEYLK 97 Query: 76 ---SKRRTQKI-GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131 S Q I ++ L R +S ++SF Y KR+ ++ L + K L+ Sbjct: 98 VYESSENKQIINSEQGLARKMSALRSFYGYFFKRQAIEKNPTLLVDMPKLHEKAIIRLDT 157 Query: 132 KQALTLVDNVLLHTSH----------ETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 + L+D + S +TK+ R+ AI+ LL G G+R+SE + L ++ Sbjct: 158 DEVAILLDYIETCGSQLTGQKKVYYEKTKY---RDLAIITLLLGTGIRVSECVGLDINDV 214 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGK 236 + +++ KG +V V KA+ +Y +L ++ LP LF + K Sbjct: 215 DFKNNGVKVTRKGGNEMVVYFGREVEKALRDYLELTRKNIT---PLPDHENALFLSTQRK 271 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + + +++ + + T H LR ++ T L GD+ + +LGH ++TT+ Sbjct: 272 RMGVQAVENMVKKYAKQVTPNKKITPHKLRSTYGTSLYKETGDIYLVADVLGHKDVNTTK 331 >gi|206973194|ref|ZP_03234116.1| integrase/recombinase, phage integrase family [Bacillus cereus AH1134] gi|206732078|gb|EDZ49278.1| integrase/recombinase, phage integrase family [Bacillus cereus AH1134] Length = 332 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 69/277 (24%), Positives = 114/277 (41%), Gaps = 32/277 (11%) Query: 58 ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117 + I T+ L E R F + + I R++ R+ S +KS KYL + + R Sbjct: 43 VPITTLENLPLNEARTFQRYLQGEGIETRAINRTFSALKSLFKYLAQNTENEQGENYISR 102 Query: 118 NLKKSNSLPRA---------------LNEKQALTLVDNV------LLHTSHETKWI---- 152 N+ + L + NEK + + + +L+ K+ Sbjct: 103 NVMEKIELHKEKVDAAARADDVANMIFNEKDDVAFLQFLANDYGEMLNDISPKKYSFFQR 162 Query: 153 -DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211 R+ I+ L+ G GLR+SE SLT +I Q + + KG+K + S + Sbjct: 163 DKERDIPIISLILGTGLRVSEVASLTISSINFRQGKVEVTRKGNKRSSILATRSCLDDVQ 222 Query: 212 EYYDLCPFDLNL--NIQLPLFRGIRGKPLNPGVFQRYIRQL--RRYLGLPLSTTAHTLRH 267 EY + P N + L +GK V R I++L + + H LRH Sbjct: 223 EYIKVRPGKYNCPQDEDLLFVTNYKGKYTQLTV--RSIQKLCDKYSSAFDEKRSPHKLRH 280 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 ++AT+ DL ++ LGH + T IYTN+N++ Sbjct: 281 TYATNHYKENKDLVLLRDQLGHTSIEVTSIYTNINNE 317 >gi|89147332|gb|ABD62528.1| integrase [uncultured bacterium] Length = 163 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 31/61 (50%), Positives = 43/61 (70%), Gaps = 3/61 (4%) Query: 244 QRYIRQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 +R RQL++ + G+ + HTLRHSFATHLL G D+R++Q +LGH +STT IYT+ Sbjct: 102 ERLNRQLKKAVVQAGIAKHVSVHTLRHSFATHLLQAGTDIRTVQELLGHSDVSTTMIYTH 161 Query: 301 V 301 V Sbjct: 162 V 162 >gi|21229822|ref|NP_635739.1| site-specific recombinase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66766698|ref|YP_241460.1| site-specific recombinase [Xanthomonas campestris pv. campestris str. 8004] gi|12746334|gb|AAK07444.1|AF324483_1 site-specific recombinase IntIA [Xanthomonas campestris pv. campestris] gi|21111319|gb|AAM39663.1| site-specific recombinase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572030|gb|AAY47440.1| site-specific recombinase [Xanthomonas campestris pv. campestris str. 8004] Length = 327 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 83/182 (45%), Gaps = 39/182 (21%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYD----- 215 LLYG G+R+ E L L +++ + + ++ GKG K R VPL S+R +++ + Sbjct: 131 LLYGSGMRLLECLRLRIKDVDMVRCEIVVRDGKGGKDRRVPLPRSLRGELMQQRERALLL 190 Query: 216 --LCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYL----------------- 254 + + LP L R + PG +Q RR + Sbjct: 191 HAADLAEGAGQVFLPHALARKYPSADVEPG-WQYLFPGARRSVDPRSGRVGLHHVSEEIR 249 Query: 255 -----------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 G+ T HTLRHSFATH L G D+R++Q +LGH ++TTQIYT+V Sbjct: 250 QRAVHAARRRAGIDKPATCHTLRHSFATHPLEAGHDIRTVQELLGHKDVATTQIYTHVLG 309 Query: 304 KN 305 + Sbjct: 310 RG 311 >gi|330448288|ref|ZP_08311936.1| phage integrase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492479|dbj|GAA06433.1| phage integrase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 480 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 79/318 (24%), Positives = 129/318 (40%), Gaps = 61/318 (19%) Query: 19 QNWLQNLEIE------RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 Q WLQ +E + S++ L+++ C F I + IT+ L T ++ Sbjct: 171 QGWLQPIEPQFYRFELSTQSRVMLEAFSC----FCIRSCVERFDWITLLYAPVLQST-MQ 225 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLK--KSNSLPRAL 129 +F++ R GD+ + + + L+ L+ + + ++++ L+ K+ LPR Sbjct: 226 SFLTDRIENTFGDQKKSYAPATADNLLRMLRGVAQHAWLAELISVETLERIKAIKLPRGS 285 Query: 130 NEKQALTLVDNVLLHTS-----HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 + L L H S + K R++AI +L+Y GLR +E +SL +I D Sbjct: 286 RQSSGRYLSYQELDHISALTLEQKNKAKALRDNAIFWLMYEAGLRRAEVVSLNIYDIDMD 345 Query: 185 QSTLRIQGKGDKIRIVPLL------------------------PSVRKAILEYYDLCPFD 220 + LR+ GKG+K R VP P++ I Y L Sbjct: 346 RCQLRVVGKGNKERYVPFSINSDLYSTMQQWLAVRQQNSLMDKPALFCTINRYQALTHQR 405 Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280 L L +G+ K N V + H RHS AT+LL G DL Sbjct: 406 LTTQTLNDLCKGLNKKGFNRVV------------------SPHDFRHSVATNLLRAGFDL 447 Query: 281 RSIQSILGHFRLSTTQIY 298 + +GH ++TTQ Y Sbjct: 448 LLVSKFMGHSSITTTQRY 465 >gi|317009395|gb|ADU79975.1| integrase/recombinase (xerD) [Helicobacter pylori India7] Length = 355 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 73/271 (26%), Positives = 126/271 (46%), Gaps = 19/271 (7%) Query: 48 IFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKR 105 +FL F Y ++ + +++ R LS ++ F+ + Q S+ + + ++ F YL +K+ Sbjct: 77 LFLFFDYFKDNLKLRSFRVLSEEQVINFLFEL-AQNRKPSSMAKYVMYLRQFFDYLDRKK 135 Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165 + + + N+ K SLPR LN K + LL S T + + RN IL ++ Sbjct: 136 HYSFDFALKNLAFAKTKESLPRHLNYKDLKAFL-KTLLEYSPATSF-EKRNKCILLIVIL 193 Query: 166 CGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223 GLR E LS+ ++I ++ ++ IQGKG K R + S+ + L + + L Sbjct: 194 GGLRKCEVLSIELKHIQVEEQNYSILIQGKGRKERKAYIKKSLLELSLNAWLSDDYRLKY 253 Query: 224 NIQLPLFRGIRGKPLN--------PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275 + LF+ + K N P +F+ + Q++ Y T H RHSFAT + Sbjct: 254 FNGVYLFKKDKQKAQNSLTLYNFIPLIFK--LAQIKHYK--QYGTGLHLFRHSFATLIYQ 309 Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 DL LGH L +T+IY + ++ Sbjct: 310 ETQDLVLTSRALGHSSLLSTKIYIHTTQEHN 340 >gi|70905575|gb|AAZ14841.1| orf/DNA integrase fusion protein [Achromobacter denitrificans] Length = 287 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 31/66 (46%), Positives = 41/66 (62%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 206 TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 265 Query: 302 NSKNGG 307 G Sbjct: 266 LKVGGA 271 >gi|158312286|ref|YP_001504794.1| integrase family protein [Frankia sp. EAN1pec] gi|158107691|gb|ABW09888.1| integrase family protein [Frankia sp. EAN1pec] Length = 304 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 69/292 (23%), Positives = 125/292 (42%), Gaps = 22/292 (7%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 LL E + WL ERGLS ++++ Y ++ FL + + L ++ A Sbjct: 16 LLVEFRGWLDR---ERGLSPVSVRCYAKQSKVFLAGIG-------GAGAVSGLDAGKVTA 65 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKK--RKITTESNILNMRNLKKSNSLPRALNE 131 F+ T S K ++ +++FL++ R + + + + ++LPR L Sbjct: 66 FMVAW-TAGRNTWSAKAMVTSLRAFLRFAHATGRTAVSLAGAVPAVASWRMSALPRGLKA 124 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 + ++ +L +T + R+ A+L LL GLR +EA L +I + + Sbjct: 125 SE----IERLLTGCDRDTA-VGLRDYAVLSLLARLGLRSAEAAGLRLDDIDWRAGEIAVT 179 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 GKG + +PL +AI + P + ++ + + R R PL P + + + Sbjct: 180 GKGSRTERLPLPAPAGEAIAAWLTGGRPRCESRSVFVTVRRPYR--PLTPESVRAVMGRA 237 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 GL T H RH+ AT +L G L + +L H +T +Y V+ Sbjct: 238 CERAGLERRGT-HRFRHALATEMLRAGASLPEVGQVLRHRSQLSTSLYAKVD 288 >gi|89147551|gb|ABD62635.1| integrase [uncultured bacterium] gi|89147590|gb|ABD62654.1| integrase [uncultured bacterium] gi|89147618|gb|ABD62668.1| integrase [uncultured bacterium] Length = 163 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 28/47 (59%), Positives = 36/47 (76%) Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G+ S + HT RHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 116 GIRKSGSCHTFRHSFATHLLENGQDIRTVQELLGHKDVSTTMIYTHV 162 >gi|306822058|ref|ZP_07455442.1| phage integrase [Bifidobacterium dentium ATCC 27679] gi|304554658|gb|EFM42561.1| phage integrase [Bifidobacterium dentium ATCC 27679] Length = 273 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 53/212 (25%), Positives = 91/212 (42%), Gaps = 41/212 (19%) Query: 97 SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156 SF ++++ + + + ++++ + PR +K L+ + + Sbjct: 80 SFFRWIRAHDLRDDDPSQELPSVRRPQTHPRPCPDKVILSALSKA-----------NDEE 128 Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 +L L CGLR SE S++ ++MDD +L ++GK DK R+VPL + I ++ Sbjct: 129 QLMLRLGAECGLRRSEIASVSSTDVMDDLVGRSLIVRGKNDKQRLVPLPDDLADLITAHH 188 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-----TAHTLRHSF 269 D L PG +Q ++ Y+G LS T H+LRH + Sbjct: 189 DY---------------------LFPGRWQGHVEA--SYIGKHLSRLLDGWTTHSLRHRY 225 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 AT DL + +LGH + TTQ Y + Sbjct: 226 ATRAYEATHDLLLVSKLLGHASVETTQRYVAM 257 >gi|298245910|ref|ZP_06969716.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297553391|gb|EFH87256.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 328 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 61/253 (24%), Positives = 117/253 (46%), Gaps = 17/253 (6%) Query: 56 EKITIQTIRQL------SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT 109 EK+TI +R + +E+ S + + D S+K ++ K F + + ++ Sbjct: 47 EKVTILHLRDCVRHMIDTPSEVVRERSYGKKSNLADSSVKTYVNIWKVFFNWCYQEELID 106 Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169 + ++ K + + + ++D++ L T I R+ IL LL G+R Sbjct: 107 SNPSARLKAPKLEKRVLKTFTSEHIYRMLDSLNLSTD-----IGFRDYVILLLLLDTGIR 161 Query: 170 ISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN---IQ 226 + E +L +++ D + ++++GKG K R V + P V K + +Y N + I Sbjct: 162 LDEIGTLLLEDVHD--TYIKVRGKGRKEREVGIHPDVSKQLWKYVHKHRHPGNPDEPKIF 219 Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQS 285 + + RGK ++ + + +L+ L L + +AHT RH+FA L+ GGD+ + Sbjct: 220 IDCSKQGRGKAISRAGVKGMLARLKVALDLKDVRLSAHTFRHTFAKMYLAQGGDIFKLSR 279 Query: 286 ILGHFRLSTTQIY 298 +GH + TQ Y Sbjct: 280 EMGHTNVRITQKY 292 >gi|330502138|ref|YP_004379007.1| phage integrase family protein [Pseudomonas mendocina NK-01] gi|328916424|gb|AEB57255.1| phage integrase family protein [Pseudomonas mendocina NK-01] Length = 342 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 66/152 (43%), Gaps = 29/152 (19%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 I+ L G R SEA LTP + + T + K K+R VP+ P + I +++ Sbjct: 188 IVLLCLATGARWSEAECLTPSRLRNGAVTYS-KTKSSKVRTVPIQPELEAFIRDHWK--- 243 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG-----LPLSTTAHTLRHSFATHL 273 G F I RR L LP +H LRH+FA+H Sbjct: 244 --------------------RHGQFTGAITSFRRALSRSGIVLPKGQASHALRHTFASHF 283 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + GG++ ++Q ILGH L+ T Y ++ ++ Sbjct: 284 MQKGGNILTLQKILGHSSLAMTMRYAHLAPEH 315 >gi|227461180|gb|ACP39537.1| putative integron integrase [uncultured microorganism] Length = 306 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 41/64 (64%) Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L+ QR ++Q R G+ + HT RH FATHLL +G D+R++Q +LGH + TT I Sbjct: 243 LHEQTVQRAVKQAVRRAGIQQPASCHTFRHCFATHLLEDGYDIRTVQELLGHSDVKTTMI 302 Query: 298 YTNV 301 YT+V Sbjct: 303 YTHV 306 >gi|89147340|gb|ABD62532.1| integrase [uncultured bacterium] Length = 163 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 31/61 (50%), Positives = 43/61 (70%), Gaps = 3/61 (4%) Query: 244 QRYIRQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 +R RQL++ + G+ + HTLRHSFATHLL G D+R++Q +LGH +STT IYT+ Sbjct: 102 ERLNRQLKKAVVQAGIAKHVSVHTLRHSFATHLLQAGTDIRTVQELLGHSDVSTTMIYTH 161 Query: 301 V 301 V Sbjct: 162 V 162 >gi|89147334|gb|ABD62529.1| integrase [uncultured bacterium] Length = 163 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 44/74 (59%) Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 P + +R L+ Q+ +R+ +G+ T H RH FATHLL G D+R++Q +L Sbjct: 89 PRSKVVRRHHLDESGLQKAVRRAATEVGITKHVTPHIFRHCFATHLLEAGYDIRTVQELL 148 Query: 288 GHFRLSTTQIYTNV 301 GH + TTQIYT+V Sbjct: 149 GHKDVKTTQIYTHV 162 >gi|225572145|ref|ZP_03781009.1| hypothetical protein RUMHYD_00439 [Blautia hydrogenotrophica DSM 10507] gi|225040317|gb|EEG50563.1| hypothetical protein RUMHYD_00439 [Blautia hydrogenotrophica DSM 10507] Length = 351 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 67/287 (23%), Positives = 128/287 (44%), Gaps = 34/287 (11%) Query: 38 SYECDTRQFLIFL-----AFYTE--EKITIQTIRQLSYTEI-------RAFISKRRTQKI 83 SY D R F +L F ++ T+ + QL +I + + ++ +T Sbjct: 48 SYAYDIRVFFQYLLEENPTFKNRPMDQFTVDILDQLQVLDIEEYQEYLKVYQNQNKTTTN 107 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 G+R LKR +S ++SF Y KR++ T + +++M L + ++ R ++ AL L + Sbjct: 108 GERGLKRKMSSLRSFYAYYYKREMIETNPTLLVDMPKLHQ-KAITRLDADEVALLL--DY 164 Query: 142 LLHTSHE--------TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 + H E + R+ A++ LL G G+R+SE + L +++ + +++ K Sbjct: 165 IEHAGDELTGQKKVYYEKTKERDLALVTLLLGTGIRVSECVGLDVEDLDFKNNGIKVTRK 224 Query: 194 GDKIRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 G IV V A+ Y ++ P + + LF + K L + +++ Sbjct: 225 GGGEMIVYFGSEVETALRRYLKARDNITPV---VGHEHALFYSTQRKRLGVQAVENLVKK 281 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + T H LR ++ T L GD+ + +LGH ++TT+ Sbjct: 282 YASQITTTKKITPHKLRSTYGTALYQETGDIYLVADVLGHRDVNTTK 328 >gi|89147667|gb|ABD62692.1| integrase [uncultured bacterium] Length = 163 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 30/61 (49%), Positives = 41/61 (67%) Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 G+ Q + + R G+ H+LRHSFATHLLS G D+R++Q +LGH +STT IYT+ Sbjct: 102 GILQSALNRAVRAGGIVKRANCHSLRHSFATHLLSKGYDIRTVQELLGHKDVSTTMIYTH 161 Query: 301 V 301 V Sbjct: 162 V 162 >gi|297627411|ref|YP_003689174.1| Phage integrase:Phage integrase, N-terminal SAM-like [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296923176|emb|CBL57769.1| Phage integrase:Phage integrase, N-terminal SAM-like [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 313 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 80/293 (27%), Positives = 132/293 (45%), Gaps = 18/293 (6%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 ++L E + WL ER + T +Y F+ +L EE ++R+L+ + Sbjct: 14 DVLDEFERWLLQ---ERSAQECTAAAYTARVAAFVEWLPAPVEE-----SLRKLTAAMLI 65 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK--RKITTESNILNMRNLKKSNSLPRALN 130 ++ + + +L + L ++SFL+Y + R S ++ + +S+P + Sbjct: 66 EWVDLEAARGLKASTLGKQLVMLRSFLQYAHRSGRMGQDLSGVVPHAAAWRLSSIPDPVP 125 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 L D + L + R+ AIL LL G GLR E L +I +LRI Sbjct: 126 AGTIEALFDTLDLRSPKGL-----RDRAILLLLTGLGLRACEIAGLRLDDIGWRTGSLRI 180 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQ 249 +GKGD++ +PL V A LE Y L + + + I +PL+ IRQ Sbjct: 181 RGKGDRVDELPLPDEVGHA-LEDYVLHGRGGRVQGEEVFWTVIDPVQPLSANGVCGTIRQ 239 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + G+ H LRH+FAT +L+ G L+ +Q +L H L TT +Y V+ Sbjct: 240 ICIKAGVE-KFGPHRLRHTFATGMLATGATLQEVQGLLRHAHLRTTALYAKVD 291 >gi|168178695|ref|ZP_02613359.1| site-specific recombinase, phage integrase family [Clostridium botulinum NCTC 2916] gi|182671520|gb|EDT83494.1| site-specific recombinase, phage integrase family [Clostridium botulinum NCTC 2916] Length = 356 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 61/261 (23%), Positives = 116/261 (44%), Gaps = 41/261 (15%) Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNL 119 + IR + +++ I + + +++ L I +F KY++ + E N++ Sbjct: 105 KKIRAMQRCDVQKIIDNFIKEGLKQSTIETYLRRINTFFKYVRDDLNLIIELPTTNIKIP 164 Query: 120 K-KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178 K KSN+ +ALN+K+ L++N+ + + + ++ G+R+ E L LT Sbjct: 165 KEKSNTNKKALNKKELYNLLENLKNNKFY----------IVAFIAANTGMRLGEILGLTW 214 Query: 179 QNIMDDQSTLRIQ--------GKG--------DKIRIVPLLPSVRKAILEYYDLCPFDLN 222 ++ +T+ + GK + RI+P+ +V+ + Y P D+ Sbjct: 215 NDVDFKDNTVNVNKQWKILKNGKSGFGPVKSKNSNRIIPISKNVKNELKNYKKNNPTDI- 273 Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282 R P + Y+ R L S + H LRH++AT L+S+G D ++ Sbjct: 274 ---------YNRVAPFSTNSINNYLNSKLRELA---SISLHELRHTYATLLISSGIDFKT 321 Query: 283 IQSILGHFRLSTTQIYTNVNS 303 + ILGH T +IY++VN Sbjct: 322 VAKILGHDVEQTMRIYSHVND 342 >gi|153814903|ref|ZP_01967571.1| hypothetical protein RUMTOR_01118 [Ruminococcus torques ATCC 27756] gi|317500415|ref|ZP_07958639.1| phage integrase family Integrase/recombinase [Lachnospiraceae bacterium 8_1_57FAA] gi|331089578|ref|ZP_08338477.1| hypothetical protein HMPREF1025_02060 [Lachnospiraceae bacterium 3_1_46FAA] gi|145847934|gb|EDK24852.1| hypothetical protein RUMTOR_01118 [Ruminococcus torques ATCC 27756] gi|316898170|gb|EFV20217.1| phage integrase family Integrase/recombinase [Lachnospiraceae bacterium 8_1_57FAA] gi|330404946|gb|EGG84484.1| hypothetical protein HMPREF1025_02060 [Lachnospiraceae bacterium 3_1_46FAA] Length = 366 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 72/296 (24%), Positives = 123/296 (41%), Gaps = 29/296 (9%) Query: 27 IERGLSKLTLQSYECDTRQFLIFL-------AFYTEEKITIQTIRQLSYTEIRAF----- 74 IE S T SY D R F FL YT ++ T+ I L +I + Sbjct: 51 IEPTTSANTRISYAYDIRVFFRFLMENNPVYKNYTIDQFTLADIENLEPVDIEEYQEYLK 110 Query: 75 ISKRRTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 + K +++ ++ L R +S ++SF Y KR+ +++ L + K L+ Sbjct: 111 VYKNDEKQVTNTEKGLARKMSALRSFYGYYFKRQAISKNPTLLVDMPKLHEKAIIRLDAD 170 Query: 133 QALTLVDNVLLHTSHETKWIDA-------RNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 + + L+D V H T A R+ AIL LL G G+R+SE + L ++ + Sbjct: 171 EVVRLLDYVDHGGDHLTGQKKAYFEKTRNRDLAILTLLLGTGIRVSECVGLDINDVDFEN 230 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNP 240 + +++ KG IV V A+ + LP LF + K + Sbjct: 231 NGIKVMRKGGNEMIVYFGEEVENALKT---YMYTTRRTTLPLPGHENALFLSTQRKRMGV 287 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + +++ R + T H LR ++ T L GD+ + +LGH ++TT+ Sbjct: 288 QAIENMVKKYAREVTPNKKITPHKLRSTYGTSLYKETGDIYLVADVLGHKDVNTTK 343 >gi|94442264|dbj|BAE93631.1| integron integrase [uncultured bacterium] Length = 162 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 28/74 (37%), Positives = 46/74 (62%) Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 P +R + Q+ +++ G+ + + H+LRHSFATHL+ +G D+R++Q +L Sbjct: 88 PRSGAVRRHHIGESSMQKAVKRALATAGIEKNASCHSLRHSFATHLIESGTDIRTVQELL 147 Query: 288 GHFRLSTTQIYTNV 301 GH +STT IYT+V Sbjct: 148 GHKDVSTTMIYTHV 161 >gi|89147598|gb|ABD62658.1| integrase [uncultured bacterium] Length = 163 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 28/47 (59%), Positives = 36/47 (76%) Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G+ S + HT RHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 116 GIRKSGSCHTFRHSFATHLLENGQDVRTVQELLGHKDVSTTMIYTHV 162 >gi|154499004|ref|ZP_02037382.1| hypothetical protein BACCAP_02996 [Bacteroides capillosus ATCC 29799] gi|150271844|gb|EDM99070.1| hypothetical protein BACCAP_02996 [Bacteroides capillosus ATCC 29799] Length = 327 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 56/236 (23%), Positives = 105/236 (44%), Gaps = 25/236 (10%) Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 + + R++ K+ +++R LS S+ +L+ +S + + +K + + ++ Sbjct: 103 YQANRKSSKVTIDNIRRILS---SYFSWLEDEDYIVKSPVRRIHKVKTAKVIKETYTDEA 159 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 + DN + R+ A++ LL G+R+ E ++L +I ++ + GK Sbjct: 160 LEIMRDNCC----------NVRDLAMIDLLASSGMRVGEMVALNRDDINFNERECVVFGK 209 Query: 194 GDKIRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 G K RIV + +L Y D C L +++ P R L G +R +R+ Sbjct: 210 GSKERIVYFDARTKIHLLNYLESRTDTCSA-LFVSLTAPHDR------LQIGGVERRLRE 262 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 L + L LP H R + AT + G + +Q +LGH ++ TT Y V +N Sbjct: 263 LGKRLHLP-RVHPHKFRRTLATSAIDKGMPIEQVQQLLGHQKIDTTMHYAMVKQQN 317 >gi|94442262|dbj|BAE93630.1| integron integrase [uncultured bacterium] Length = 162 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 28/74 (37%), Positives = 46/74 (62%) Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 P +R + Q+ +++ G+ + + H+LRHSFATHL+ +G D+R++Q +L Sbjct: 88 PRSGAVRRHHIGESSMQKAVKRALATAGIEKNASCHSLRHSFATHLIESGTDIRTVQELL 147 Query: 288 GHFRLSTTQIYTNV 301 GH +STT IYT+V Sbjct: 148 GHKDVSTTMIYTHV 161 >gi|38637703|ref|NP_942677.1| putative integrase/recombinase [Ralstonia eutropha H16] gi|32527041|gb|AAP85791.1| putative integrase/recombinase [Ralstonia eutropha H16] Length = 332 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 78/284 (27%), Positives = 115/284 (40%), Gaps = 14/284 (4%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQ 81 Q L +R S T+ SY RQFL F + + ++ I AF+ + Q Sbjct: 17 QRLMQQRQASPHTISSYRDTFRQFLKFALQRLHRQPSRMNFEEIDAPLIVAFLDDLEKRQ 76 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 + RS L+ I SF +Y + I + + S R L + VD + Sbjct: 77 GVSVRSRNLRLTAIHSFFRYAALETPAHSAQIQRVLAIP-SKRFTRTLVQFLTRQEVDAL 135 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRIQGKGDKIRIV 200 L T W R+ A L GLR+SE L + ++ + +R+ GKG K R Sbjct: 136 LAAPDQRT-WSGRRDHAFLLFAVQTGLRLSEMTGLKRDDLVLGIGAHVRVIGKGRKERCT 194 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 P++ S A+L+ + P ++ LF RG+ L Q + + R + Sbjct: 195 PIVRST-LAVLKAWLREPKRGEGDV---LFPNARGERLTVHGVQYLLNKHRETASKVCPS 250 Query: 261 ------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 T H LRH+ A LL G D I LGH + TTQIY Sbjct: 251 LKHKQVTVHRLRHTMAMDLLQAGVDRSVIALWLGHESVETTQIY 294 >gi|147668708|ref|YP_001213526.1| phage integrase family protein [Dehalococcoides sp. BAV1] gi|146269656|gb|ABQ16648.1| phage integrase family protein [Dehalococcoides sp. BAV1] Length = 332 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 105/225 (46%), Gaps = 14/225 (6%) Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 G +S+ I+ F+ +LK T + +R K +PR + + +L Sbjct: 90 GPQSVTDYFKQIRPFINWLKDNGQITVDPLKQVRLPK----VPRKVIQPFTQEHCQRLLA 145 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 S ET + D RN A++ LL GLR+ E L +I D +++ GKG K RIV + Sbjct: 146 LVSGET-FEDKRNKALILLLLDTGLRLRECTELKWSDINYDSELVKVMGKGAKERIVRIG 204 Query: 204 PSVRKAILEYYDL----CPFDLNLNIQLPLFRG-IRGKPLNP----GVFQRYIRQLRRYL 254 P V++A+LEY L P D ++ + + K +P G+ Q + +R Sbjct: 205 PKVQRALLEYQYLKIQSFPGDKTPDVWVSRHKTRYSDKECHPLTKNGIMQTIVVLGKRAG 264 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 + + HT RH+FAT L NG +QS++GH L+ T+ Y Sbjct: 265 ITNIRCSPHTFRHTFATMCLRNGAGEFEVQSLMGHSTLTQTRKYA 309 >gi|294139967|ref|YP_003555945.1| phage integrase family protein [Shewanella violacea DSS12] gi|293326436|dbj|BAJ01167.1| phage integrase family protein [Shewanella violacea DSS12] Length = 152 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 34/74 (45%), Positives = 47/74 (63%), Gaps = 3/74 (4%) Query: 229 LFRGIRGKP---LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285 LF G GKP ++ G Q+ ++++ + S + H LRHS+ATHLL G DLRS+QS Sbjct: 50 LFPGKDGKPDSLIDKGGIQKALKRVIAECNIHKSISPHNLRHSYATHLLEQGLDLRSVQS 109 Query: 286 ILGHFRLSTTQIYT 299 +LGH L+TT YT Sbjct: 110 LLGHNSLNTTARYT 123 >gi|198282468|ref|YP_002218789.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198282805|ref|YP_002219126.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198284132|ref|YP_002220453.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666115|ref|YP_002425003.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] gi|218666952|ref|YP_002425321.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] gi|218667875|ref|YP_002426786.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] gi|198246989|gb|ACH82582.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198247326|gb|ACH82919.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198248653|gb|ACH84246.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518328|gb|ACK78914.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] gi|218519165|gb|ACK79751.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] gi|218520088|gb|ACK80674.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] Length = 332 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 75/292 (25%), Positives = 127/292 (43%), Gaps = 23/292 (7%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRT 80 L+ L ER LS T +SY FL ++ + + T+ LS IR F+S + Sbjct: 16 LEYLVRERNLSINTQRSYRDMLSLFLPHVSKQLNKSVDRLTVSDLSADLIRQFLSDIEES 75 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD- 139 + + + L G+ + +++ E++ ++ + +P +T ++ Sbjct: 76 RHCLAATRNQRLGGLHALARFIG------ENSPEHIEWCSQIRLIPFKKTAYPGITYLEK 129 Query: 140 ---NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 + LL + R+ A+L LY G R SEA L ++ I GKG+K Sbjct: 130 PEMDALLESPDRQTPQGQRDYALLLFLYNTGARASEAADLRIVDVDWHAQCAHIIGKGNK 189 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRY-L 254 R PL P+ L+ L+ ++ L R G+P+ G+ R R + Sbjct: 190 RRTCPLWPTT----LDQLRALATQRGLDQRVFLNRN--GQPITRFGIHTMVERHAARACV 243 Query: 255 GLPLSTT----AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 +P +T H +RHS ATHLL G D+ ++++ LGH L+TT IY + Sbjct: 244 QVPSMSTKQVSPHVIRHSTATHLLRAGVDINTVRAWLGHVSLTTTNIYAETD 295 >gi|119900014|ref|YP_935227.1| integrase [Azoarcus sp. BH72] gi|119672427|emb|CAL96341.1| putative truncated integrase [Azoarcus sp. BH72] Length = 66 Score = 62.8 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 29/52 (55%), Positives = 37/52 (71%) Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 G+ T HTLRHS ATHLL G D+R++Q +LGH +STT IYT+V +K G Sbjct: 5 GIARHVTVHTLRHSVATHLLEGGYDIRTVQELLGHADVSTTMIYTHVLNKGG 56 >gi|224418352|ref|ZP_03656358.1| integrase-recombinase protein XERCD family [Helicobacter canadensis MIT 98-5491] gi|253827673|ref|ZP_04870558.1| integrase/recombinase XerD [Helicobacter canadensis MIT 98-5491] gi|313141883|ref|ZP_07804076.1| integrase-recombinase protein xercd family protein [Helicobacter canadensis MIT 98-5491] gi|253511079|gb|EES89738.1| integrase/recombinase XerD [Helicobacter canadensis MIT 98-5491] gi|313130914|gb|EFR48531.1| integrase-recombinase protein xercd family protein [Helicobacter canadensis MIT 98-5491] Length = 353 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 82/157 (52%), Gaps = 7/157 (4%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPL-LPSVRK 208 + ARN +L ++ G+R+ E+L+L ++I D ++++GKG+K R+V + ++ Sbjct: 191 LGARNRLLLKVIIYTGIRVGESLNLKIKDITLDGDFYVIQVRGKGNKPRVVMIKAKNISN 250 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRH 267 + + P ++ ++ LF +GK L R + Q+ G+ AH LRH Sbjct: 251 DFSLWINSRPNEVENDL---LFCNHKGKKLTQAYVSRIVEQVLLTNGIRKEKNGAHMLRH 307 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 SFAT L DL +Q LGH + T++IYT+ + + Sbjct: 308 SFATLLYQKSQDLVLVQEALGHASVETSRIYTHFDKQ 344 >gi|196250966|ref|ZP_03149649.1| integrase family protein [Geobacillus sp. G11MC16] gi|196209530|gb|EDY04306.1| integrase family protein [Geobacillus sp. G11MC16] Length = 304 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 74/306 (24%), Positives = 141/306 (46%), Gaps = 41/306 (13%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 +L E + +LQ E+G S T+ SY D QFL L + +T IR+ I+ Sbjct: 1 MLHEYETYLQ----EKGFSPNTVISYLNDVNQFLKDLHLRPGDYVTSADIRKW----IQQ 52 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 ++ + + ++ R L+ ++SF + + ++ + ++++LK ++ + ++ Sbjct: 53 MLNPVEGKPLAISTINRRLNSLRSFYAWAVEHYKLEQNPMKDIQDLKSADE-----DNEK 107 Query: 134 ALTLVDNV---LLHTSH----ETKWIDA-----RNSAILYLLYGCGLRISEALSLTPQNI 181 + L + LLH +++ +D R+ A++YLL GLR+ E +L ++ Sbjct: 108 IMWLTEEEFEDLLHRMRKKPVQSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDL 167 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-------LFRGIR 234 + +RI GKG K+R VP + ++ A LE D F + + P +F R Sbjct: 168 DLEMKRIRIVGKGMKVRTVP-ISNILLAELE--DWLKFRAEMAKKKPHVAESPYVFYSQR 224 Query: 235 GKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRL 292 +P R I+++ LP T H RH+F +L + D+ ++ + GH + Sbjct: 225 ----SPKFSVRGIQRMIESYSLPNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNI 280 Query: 293 STTQIY 298 +TT Y Sbjct: 281 ATTSRY 286 >gi|227461209|gb|ACP39549.1| putative integron integrase [uncultured microorganism] Length = 286 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 41/64 (64%) Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L+ QR ++Q R G+ + HT RH FATHLL +G D+R++Q +LGH + TT I Sbjct: 223 LHEQTVQRAVKQAVRRAGIQQPASCHTFRHCFATHLLEDGYDIRTVQELLGHSDVKTTMI 282 Query: 298 YTNV 301 YT+V Sbjct: 283 YTHV 286 >gi|119716408|ref|YP_923373.1| phage integrase family protein [Nocardioides sp. JS614] gi|119537069|gb|ABL81686.1| phage integrase family protein [Nocardioides sp. JS614] Length = 303 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 57/205 (27%), Positives = 88/205 (42%), Gaps = 30/205 (14%) Query: 97 SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156 S +Y+++ +++TES L + +L+ L + K + + Sbjct: 103 SPAEYVRRPRVSTESPTLGLSHLQLEAML--------------------TAGRKSANIND 142 Query: 157 SAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 A++ +L GLRI EA + + + LR+ GKGDKI +VPL P+V +AI Sbjct: 143 FALVTMLGLLGLRIFEATGANVEALEEVHGHRVLRVWGKGDKIALVPLPPAVGRAIERAV 202 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHL 273 D P+ R G ++ R +R L R G+ H LRH+F T + Sbjct: 203 D-------GRTGGPILRSRTGNRMDRHCATRRLRALARVAGIATDRMHPHMLRHTFVTTM 255 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIY 298 L G DLR +Q H TT Y Sbjct: 256 LDAGVDLRDVQIAARHADPRTTMRY 280 >gi|30908752|gb|AAP37608.1| IntI [uncultured bacterium] Length = 161 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 42/64 (65%) Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 ++P Q+ ++ R +P + HTLRHS ATHLL +G D+R+I +LGH +STT I Sbjct: 98 VSPSSLQKVFKEALRKTRIPKNAGPHTLRHSXATHLLQDGYDIRTIHDLLGHKEISTTMI 157 Query: 298 YTNV 301 YT+V Sbjct: 158 YTHV 161 >gi|323709096|gb|ADY02569.1| IntI1 integron integrase [Aeromonas media] Length = 310 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 78/171 (45%), Gaps = 37/171 (21%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207 LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDNGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198 Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 +A + F + + P +R + FQ Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 R ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTT 309 >gi|303235718|ref|ZP_07322325.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302484165|gb|EFL47153.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 406 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 75/301 (24%), Positives = 132/301 (43%), Gaps = 49/301 (16%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q+ + + I+R L L++Y+ L Y +K + I + + FI Sbjct: 119 QHTKERIGIDRALKTFKLRTYQSS------LLREYVNKKYKLSDIPLVGLD--KTFIEGY 170 Query: 79 RTQKIGDRSLKRS-----LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 DR LKR+ LS +K+ + K+ + + +K+ PR + +++ Sbjct: 171 EYYLTVDRKLKRASISSTLSALKTIVSMAVKKGFLDLDPFIGY-SYEKAKGTPRNITQEE 229 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQ 191 ++ LH +W + R L++ + C GL IS+ +L +NI+ ++ L I+ Sbjct: 230 LQKIIS---LHI----EWDNYRIVRDLFV-FSCFTGLAISDVRNLKEENIVCEEGKLCIK 281 Query: 192 GKGDKIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL----NPGVFQ 244 GK K + V +LP KAI+E Y RG R + + Sbjct: 282 GKRVKTKTPYRVQILPPA-KAIMERY----------------RGKRAGYVFDVPTVDIVH 324 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + ++R +G+ T H RH+FA+ + LS G + ++ +LGH L TTQ+Y VNS Sbjct: 325 NAMHHIQRNIGMKTPLTFHMARHTFASVITLSAGVPIETVSGMLGHTNLRTTQVYAAVNS 384 Query: 304 K 304 + Sbjct: 385 E 385 >gi|237722726|ref|ZP_04553207.1| site-specific recombinase [Bacteroides sp. 2_2_4] gi|293373709|ref|ZP_06620056.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|301311822|ref|ZP_07217744.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3] gi|317473969|ref|ZP_07933248.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|229448536|gb|EEO54327.1| site-specific recombinase [Bacteroides sp. 2_2_4] gi|292631364|gb|EFF49995.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|300829924|gb|EFK60572.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3] gi|316909811|gb|EFV31486.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 381 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 10/148 (6%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 A L+ Y CGLR+S+ +L ++I+ D R+ K LP R A+ Sbjct: 230 AYLFACY-CGLRLSDVYALRWKDIVQDGEQYRMSTVMQKTTTPIYLPLSRHAV----RWL 284 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 P L +F G+ +P V +++ G+ T HT RH+FAT +L+ G Sbjct: 285 PERNGAEDGLHVFAGLPAEPNINKVLAKWMATA----GINKKITYHTSRHTFATMMLTLG 340 Query: 278 GDLRSIQSILGHFRLSTTQIYTN-VNSK 304 DL + +LGH + TTQIY V+SK Sbjct: 341 ADLYTTSKLLGHANVKTTQIYAKIVDSK 368 >gi|284097412|ref|ZP_06385523.1| tyrosine recombinase XerD [Candidatus Poribacteria sp. WGA-A3] gi|283831070|gb|EFC35069.1| tyrosine recombinase XerD [Candidatus Poribacteria sp. WGA-A3] Length = 246 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 79/185 (42%), Gaps = 17/185 (9%) Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-------RIQGKGDKIRIVP 201 T + RN + L G RISE LSLT ++ + + I G+ R VP Sbjct: 20 TGMFEIRNRGLFMLGVSTGGRISELLSLTIGDVYQNGRPVTDLLYSKNIVKGGEVSRAVP 79 Query: 202 LLPSVRKAI-------LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 + R+A+ ++YY + D L P G K L+ ++ Sbjct: 80 VNRDGRQAVDDLISWHIDYYGMTEADRPL---FPSRNGQGQKALSRREAHDVLKVAFEAA 136 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 GL H+LR SFA L GD+ ++Q +LGH ++TTQ Y VN N D + +I Sbjct: 137 GLNGHIATHSLRKSFAQRLYEQTGDIFAVQEMLGHQSVATTQKYLGVNYANVRDALEQIS 196 Query: 315 DQTHP 319 T P Sbjct: 197 VSTEP 201 >gi|322381501|ref|ZP_08055481.1| site-specific tyrosine recombinase XerC-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154543|gb|EFX46839.1| site-specific tyrosine recombinase XerC-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 314 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 70/292 (23%), Positives = 123/292 (42%), Gaps = 28/292 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFL--AFYTEEKITIQTIRQLSYTEIRAFIS 76 Q+++ +L I L+ TL+ Y D + F+ + A Y EE I + + T R + Sbjct: 29 QDFIHSLTIHEDLNPKTLKEYASDLKHFIGWFETANYQEENIVFRIEDVATPTLTRYQEA 88 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 ++ ++ ++ R L +K F ++ I ++ + + PR + +K+ Sbjct: 89 SQKVMELKPATINRRLITLKRFFEWAASNSIIRRDPSKPVKLVPEEKVSPRQMTDKEE-- 146 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 D ++ H R+ IL ++ GLR E L P +I + T+R GK +K Sbjct: 147 --DALIAAAEHGGSL---RDQTILIVMLHTGLRTMEVCDLAPGDIQIGKLTVR-SGKRNK 200 Query: 197 IRIVPLLPSVRKAILEYYDLCP------FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 R VPL + R A+ +Y P F R +R + Q+Y+++ Sbjct: 201 QREVPLNATCRSALEKYLVYLPPGSPYLFPSEKTGDRLSERALR------HLIQKYMKKA 254 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 R GL +AH LRH F ++++ L + I+GH T IY Sbjct: 255 -RLKGL----SAHDLRHRFG-YVMAVNTPLHRLAQIMGHDSPDTMMIYVKAT 300 >gi|313667356|ref|YP_004049757.1| integrase family protein [Oceanithermus profundus DSM 14977] gi|313153987|gb|ADR37837.1| integrase family protein [Oceanithermus profundus DSM 14977] Length = 345 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 56/220 (25%), Positives = 104/220 (47%), Gaps = 14/220 (6%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT--LVDNVLLHTSHET 149 LSG+++F + L ++ +R + + PR+ + AL L +L H S + Sbjct: 117 LSGLRAFYRALVWAGAVAKNPAAEVRAPR--DPTPRS-ERRPALPYPLYIRLLEHLSGDE 173 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRK 208 R+ A++ L+ GLRI+E +L +++ + + + GKG K R VP+ ++ Sbjct: 174 A-QQVRDRAVIRLMGDAGLRIAEVEALDVKDVDLGEHVVVVRAGKGGKQRTVPMTRALSS 232 Query: 209 AILEYYDL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS-TTA 262 A++E+ + P + L + L R +G+ L +R++ R LG P A Sbjct: 233 ALVEWLGVRRAYAAPGEEALFVNLG-GRKAKGRRLRAHSIRRFLEGYYRELGFPERYRGA 291 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 HTLRH T D+ + ++LGH + T+ +Y ++ Sbjct: 292 HTLRHLAGTRFYQASRDIHVVAALLGHENVGTSTVYAKMD 331 >gi|83956466|ref|ZP_00964886.1| putative integrase/recombinase [Sulfitobacter sp. NAS-14.1] gi|83839321|gb|EAP78509.1| putative integrase/recombinase [Sulfitobacter sp. NAS-14.1] Length = 329 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 77/312 (24%), Positives = 132/312 (42%), Gaps = 32/312 (10%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 ++L ER S T +Y + + F A ++ + I + I AF+ ++ Sbjct: 14 EHLPHERRASVHTCDAYAYSFQLLVTFAAGRLRKRPCLLQIEDIDVPTILAFLEH--IEQ 71 Query: 83 IGD---RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPRALNEKQALT 136 + D RS L+ +KSF +YL+ R L + + K L +L+ + Sbjct: 72 VRDNKARSRNARLAAVKSFFRYLEHRVPAVLDQALRVHAIPMKKIDQGLVASLSRAEVQA 131 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKG 194 L+D T+ R+ A+L+L + GLR+SE + + + D +S ++ I GKG Sbjct: 132 LLDAPDRRTASGI-----RDRAMLHLAFSGGLRVSELVGVG-LDQFDGRSPASIHIIGKG 185 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI--RQLRR 252 + R++PL A+ + + P + LF + + F+ YI + Sbjct: 186 RRERVLPLWQETAAAMRAWIAIRPEVGDTA----LFLNNADRMMTRSGFE-YILKKHAAA 240 Query: 253 YLGLPL-----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 G+ S T H LRHS A H+L D+R + LGH L +T+IY + Sbjct: 241 AAGIAPTLATKSITPHVLRHSCAMHMLQATRDIRKVALWLGHATLQSTEIYLRADPTEK- 299 Query: 308 DWMMEIYDQTHP 319 +E+ D P Sbjct: 300 ---LEMLDALAP 308 >gi|262042628|ref|ZP_06015784.1| phage integrase family site-specific recombinase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040062|gb|EEW41177.1| phage integrase family site-specific recombinase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 276 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 99/224 (44%), Gaps = 29/224 (12%) Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL-NMRNLKKSNSLPRALNEKQALTL 137 R + + R++ L+ ++ LK+ T N L N+R K + L ++A L Sbjct: 38 RVKAVPPRTVNLELAYFRAMFNELKRLDDWTAPNPLENVREFKIAEIELAWLTVEEAARL 97 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 ++ ++K D + I+ + G R EA SLT + I + T I+ KG K Sbjct: 98 LEEC-----EKSKAEDL--TMIVKICLATGARWGEAESLTGKQISPGKITF-IKTKGKKN 149 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGL 256 R VP+ E Y+L P + KPL G + + ++R + L Sbjct: 150 RAVPISE-------ELYELLP------------KSRTSKPLFTGCYSAFRSAIKRAGIEL 190 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 P +H LRH+FA+H + GG++ +Q ILGH + T Y + Sbjct: 191 PDGQLSHVLRHTFASHFMMGGGNILVLQRILGHTDIKVTMRYAH 234 >gi|237736957|ref|ZP_04567438.1| integrase/recombinase [Fusobacterium mortiferum ATCC 9817] gi|229420819|gb|EEO35866.1| integrase/recombinase [Fusobacterium mortiferum ATCC 9817] Length = 292 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 72/298 (24%), Positives = 131/298 (43%), Gaps = 19/298 (6%) Query: 6 LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65 + E+ ++ + K+ +++L E S T++S + D Q LA Y E + Sbjct: 1 MVEMANWNIEKDIKDFLYFEEFGNNKSPNTIKSMKKDLFQ----LAEYLNEIEKVDNCMA 56 Query: 66 LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 + IR FI + I R++ R LS ++SF KYL + K +S + + + Sbjct: 57 IDSVMIRGFIINLQENGITKRTINRKLSSLRSFFKYLVREKRINQSPVEVIASPSFYTQK 116 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-D 184 P L ++ L + + L ++ R+ IL LLY G+ E L + + + D D Sbjct: 117 PDILTLEEINKLREVISLKNAN-----GLRDRLILELLYSSGITSVEMLGV-GEGVFDLD 170 Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEY----YDLCPFDLNLNIQLPLFRGIRGKPLNP 240 + L + G R+V R+ Y + N +I LF L+ Sbjct: 171 KRELYVSN-GKSRRVVFFSERTREFFKRYIKAKKEKYKEKYNPDI---LFVNGSATRLSD 226 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 +R I + G+ + ++ RH+FA H+LS+G D+ ++ ++GH L +T++Y Sbjct: 227 RSLRRIIDRYAVKAGIEREISPYSFRHTFAVHMLSHGMDILYLKELMGHVTLESTKVY 284 >gi|167465690|ref|ZP_02330779.1| phage integrase family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 301 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 70/295 (23%), Positives = 124/295 (42%), Gaps = 28/295 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFL--AFYTEEKITIQTIRQLSYTEIRAFIS 76 Q+++ +L I L+ TL+ Y D + F+ + A Y EE I + + T R + Sbjct: 16 QDFIHSLTIHEDLNPKTLKEYASDLKHFIGWFETANYQEENIVFRIEDVATPTLTRYQEA 75 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 ++ ++ ++ R L +K F ++ I ++ + + PR + +K+ Sbjct: 76 SQKVMELKPATINRRLITLKRFFEWAASNSIIRRDPSKPVKLVPEEKVSPRQMTDKEE-- 133 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 D ++ H R+ IL ++ GLR E L P +I + T+R GK +K Sbjct: 134 --DALIAAAEHGGSL---RDQTILIVMLHTGLRTMEVCDLAPGDIQIGKLTVR-SGKRNK 187 Query: 197 IRIVPLLPSVRKAILEYYDLCP------FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 R VPL + R A+ +Y P F R +R + Q+Y+++ Sbjct: 188 QREVPLNATCRSALEKYLVYLPPGSPYLFPSEKTGDRLSERALR------HLIQKYMKKA 241 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 R GL +AH LRH F ++++ L + I+GH T IY + Sbjct: 242 -RLKGL----SAHDLRHRFG-YVMAVNTPLHRLAQIMGHDSPDTMMIYVKATRSD 290 >gi|313126748|ref|YP_004037018.1| site-specific recombinase xerd [Halogeometricum borinquense DSM 11551] gi|312293113|gb|ADQ67573.1| site-specific recombinase XerD [Halogeometricum borinquense DSM 11551] Length = 311 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 59/240 (24%), Positives = 104/240 (43%), Gaps = 28/240 (11%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK-------QALTLVD 139 SLK + +GI F + + +I + +KK + ++L + + LVD Sbjct: 65 SLKIARAGIAKFYDEMYDYNPVEDVSIGSWTAVKKGSKKSQSLRDDVHYLTPDEVQQLVD 124 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIR 198 NV H+ + RN I+ +L+ G+R E + ++ ++ ++RI K R Sbjct: 125 NV--HSPPKL-----RNELIIKMLFQTGMRRGELCKVKLHDVNREERSIRIHADKTHSNR 177 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGL- 256 V PS+ + + D + P LF + + + P R +R+ G+ Sbjct: 178 TVYYQPSLSTPLNIWIDAERNGVLTADDSPHLFPTQKAEHIKPNSVSRIVREAAEEAGIQ 237 Query: 257 -----------PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 T HTLRHSFA L NG D+R++Q ++GH + TTQ+Y ++ + Sbjct: 238 EVMYHDKGGRPKRKITGHTLRHSFAVAALKNGMDVRTLQKLMGHADIETTQMYLDLADDD 297 >gi|325001050|ref|ZP_08122162.1| integrase family protein [Pseudonocardia sp. P1] Length = 348 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 74/316 (23%), Positives = 124/316 (39%), Gaps = 50/316 (15%) Query: 29 RGLSKLTLQSYECDTRQFLIFL---------AFYTEEKITIQTIRQLSYTEIRAFISKRR 79 RGL ++T+ E R+F+ F A E ++ R L+ IR + R Sbjct: 16 RGLREVTMARREQLVRRFVAFTNEYPWDWSPAHVDEWSQSLVGERHLALASIRGYQGSLR 75 Query: 80 T--QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 + I D +++ K F I E N + + + + R ++ Sbjct: 76 SFSDYITDGRYGWAVACEKQFGPGRHPVPICHEWNTIAHLDDYEGSPEARPFTREELQRF 135 Query: 138 VDNV------LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-- 189 +D + + R++ + ++YG GLR +E L + + + Sbjct: 136 LDYADDQVGRAVTAKRKGALAAYRDATLFKVIYGWGLRRTETAQLDLADWGRNPAAAEFG 195 Query: 190 ------------IQGKGDKIRIVP-LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI--- 233 ++G+ + R VP ++ +A+ +Y D NI+ P F G Sbjct: 196 RFGMLHVRYGKAVRGQPPRRRNVPSIMGWAVEAVADYVD--------NIR-PRFGGAERP 246 Query: 234 ------RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 RG L P R LGLP + H+LRHS+ THL +G D R IQ + Sbjct: 247 GLWVTERGGRLKPVEINARFAAYRDALGLPRELSPHSLRHSYVTHLTEDGVDRRFIQEAV 306 Query: 288 GHFRLSTTQIYTNVNS 303 GH ++T IYT+V+S Sbjct: 307 GHRCDTSTAIYTHVSS 322 >gi|291550383|emb|CBL26645.1| Site-specific recombinase XerD [Ruminococcus torques L2-14] Length = 356 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 73/297 (24%), Positives = 122/297 (41%), Gaps = 30/297 (10%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAF-------YTEEKITIQTIRQLSYTEIRAF----- 74 +E S T SY D R F FL YT E+ + + +L +I + Sbjct: 40 VEPTTSARTRISYAYDIRVFFHFLMENNPVYKNYTIEQFEVHDLERLEPVDIEEYQEYLK 99 Query: 75 ISKRRTQKI---GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131 + K +K ++ L R +S ++SF Y KR+I +++ L + K L+ Sbjct: 100 VYKNDEEKCITNTEKGLARKMSALRSFYGYYFKRQIISKNPTLLVEMPKMHEKAIIRLDT 159 Query: 132 KQALTLVDNVLLHTSHETKWIDA-------RNSAILYLLYGCGLRISEALSLTPQNIMDD 184 + L+D V + T A R+ AIL LL G G+R+SE + L Q+I Sbjct: 160 DEIAMLLDYVDHGGDNLTGQRKAYFEKTKNRDLAILTLLLGTGIRVSECVGLDLQDIDFK 219 Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLN 239 + + + KG +V V A+ Y P + N LF + K + Sbjct: 220 NNGITVTRKGGNQMVVYFGEEVENALKTYLYTTRKQAIPLSGHEN---ALFLSTQRKRMG 276 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + +++ R + T H LR ++ T L GD+ + +LGH ++TT+ Sbjct: 277 VQAVENMVKKYAREVTPNKKITPHKLRSTYGTALYKETGDIYLVADVLGHKDVNTTK 333 >gi|156138689|dbj|BAF75921.1| integron integrase [uncultured bacterium] Length = 180 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 41/68 (60%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 +R ++ Q+ I R GL HTLRHSFATHLL G D+R+IQ +LGH + Sbjct: 113 VRRHHIHETTVQKAITDAVRRAGLSKPAGCHTLRHSFATHLLEVGQDIRTIQELLGHSDV 172 Query: 293 STTQIYTN 300 STT IYT+ Sbjct: 173 STTMIYTH 180 >gi|298250834|ref|ZP_06974638.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297548838|gb|EFH82705.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 309 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 69/287 (24%), Positives = 130/287 (45%), Gaps = 27/287 (9%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 +QN+ + L+ + ++Y D + F +LA +++ ++ + + R +++ Q Sbjct: 22 MQNVAGQ--LAPSSRKTYTIDAKHFAHWLA---GRDLSLTSLNRDNLVAYRTHLAETYAQ 76 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQALTLVDN 140 + R + + L +R + ++ +R K + P AL ++A L+D Sbjct: 77 S----TAARMWAVARRLLDEAVQRGLLLKNPAEGVRGFKTGDDESPHALKREEAKALLDA 132 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGDKI 197 + T+ + R++A+L LL G+R +EA++LT ++M +Q + GKG K Sbjct: 133 IDRRTA-----LGKRDNALLMLLLRTGIRRAEAVALTIGDLMMEQGYHIVIIRHGKGKKR 187 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG------KPLNPGVFQRYIRQLR 251 + L VR+AI +Y + + PLF R +PL+P R ++Q Sbjct: 188 GLAKLPVEVRQAIDDYLEAVGRACAAP-EAPLFISFRKGDHPQERPLHPNQVGRIVKQRA 246 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + +G+ +S H +R SF T G DL +Q H TT+ Y Sbjct: 247 QVVGIVMSP--HGMRASFITLAFEGGADLALVQDGARHKDPRTTRRY 291 >gi|223369828|gb|ACM88783.1| integrase [uncultured bacterium] Length = 163 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 28/59 (47%), Positives = 38/59 (64%) Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 Q ++ R G+ + HT RHSFATHLL NG D+R++Q +LGH + TT IYT+V Sbjct: 104 LQSAVKVAVRAAGIAKPASCHTFRHSFATHLLENGYDIRTVQELLGHANVKTTMIYTHV 162 >gi|197301719|ref|ZP_03166789.1| hypothetical protein RUMLAC_00445 [Ruminococcus lactaris ATCC 29176] gi|197299159|gb|EDY33689.1| hypothetical protein RUMLAC_00445 [Ruminococcus lactaris ATCC 29176] Length = 375 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 71/297 (23%), Positives = 123/297 (41%), Gaps = 30/297 (10%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAF-------YTEEKITIQTIRQLSYTEIRAFISKRR 79 +E S T SY D R F FL YT ++ T+Q + +L +I + + Sbjct: 59 VEPTTSARTRISYAYDIRVFFHFLMEVNPHYKNYTIDQFTVQDLERLDPVDIEEYQEYLK 118 Query: 80 TQKI--------GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131 K ++ L R +S ++SF Y KR+I +++ L + K L+ Sbjct: 119 VYKNEEDRQITNTEKGLSRKMSALRSFYGYYFKRQIISKNPTLLVDMPKLHEKAIIRLDT 178 Query: 132 KQALTLVDNVLLHTSHET-------KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 + L+D V + T + R+ AIL LL G G+R+SE + L Q++ Sbjct: 179 DEIAMLLDYVEHGGENLTGQRLAYYEKTKNRDLAILTLLLGTGIRVSECVGLDVQDVDFK 238 Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLN 239 + +++ KG +V V A+ Y P + N LF + K + Sbjct: 239 NNGIKVTRKGGNEMVVYFGEEVEHALKTYLYTTRKSTVPLSGHEN---ALFLSTQRKRMG 295 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + +++ R + T H LR ++ T L GD+ + +LGH ++TT+ Sbjct: 296 VQAVENMVKKYAREVTPNKKITPHKLRSTYGTALYKETGDIYLVADVLGHKDVNTTK 352 >gi|168699006|ref|ZP_02731283.1| Integron integrase [Gemmata obscuriglobus UQM 2246] Length = 322 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 84/186 (45%), Gaps = 39/186 (20%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYY--- 214 + + YG GLR+ E L L +++ D + L ++G KGDK R +LP V + +LE++ Sbjct: 128 VALIQYGSGLRLLECLRLRVKDVEWDLNQLVVRGGKGDKDRRT-MLPQVCRGLLEWHLAD 186 Query: 215 -------DLC-------------------PFDLNLNIQLPLFR--------GIRGKPLNP 240 DL P P R R L+ Sbjct: 187 VRKLHQEDLANGLGAVYVPKAFAAKNPAAPTAWAWQYVFPAHRLSVDPRSGAARRHHLHE 246 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 R + R G+ T+H+ RHSFATHL+ +G D+R++Q +LGH + TT IYT+ Sbjct: 247 SGMNRVLADAVRDAGVDKRVTSHSFRHSFATHLIESGTDIRTVQELLGHESVETTMIYTH 306 Query: 301 VNSKNG 306 V +K G Sbjct: 307 VLNKGG 312 >gi|150402206|ref|YP_001329500.1| phage integrase family protein [Methanococcus maripaludis C7] gi|150033236|gb|ABR65349.1| phage integrase family protein [Methanococcus maripaludis C7] Length = 282 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 77/289 (26%), Positives = 128/289 (44%), Gaps = 39/289 (13%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 LE GLSK T+ SY+ R F +K + R + ++ F + + K Sbjct: 10 LEFCTGLSKSTINSYKYGLRTF---------QKYANKRWRDVMVNDVILFYTNHKATKNS 60 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVDNVLL 143 S+ L + F + + K ++ + ++ L++ L QA L+ N+ Sbjct: 61 KMSV---LGTVSRFYDWGIEEKYLLDNPVKKFLKTLRREKKERNYLTTSQANYLLSNIKR 117 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIV-- 200 + + I + G+RISE ++L Q++ +D + GKG K R V Sbjct: 118 YDYY----------VITMFILKTGVRISELVNLKVQDVDLDSKIAFIGSGKGKKDRYVFF 167 Query: 201 --PLLPSVRKAILE--YYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 L +R+ I E Y D C N+ L ++RG + +++ YI ++ Sbjct: 168 DRDLAFHLREYIKERSYRDPKCD-----NLFLGVYRG-HFSQRSLTLYKEYINEVAP--N 219 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + + T H LRH+FAT +L G DL+S+ ILGH LSTT IY + N + Sbjct: 220 IHIRITPHILRHTFATSMLERGIDLKSLSLILGHEDLSTTSIYLHKNKE 268 >gi|38637711|ref|NP_942685.1| putative integrase/recombinase [Ralstonia eutropha H16] gi|32527049|gb|AAP85799.1| putative integrase/recombinase [Ralstonia eutropha H16] Length = 410 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 84/287 (29%), Positives = 124/287 (43%), Gaps = 27/287 (9%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L ERGL+ T++ Y FL + + LS EI F+ TQ G Sbjct: 126 LHQERGLAATTIRKYRWCAHLFLT-----KQFGDGATRLSDLSAREIIDFVQHEATQSPG 180 Query: 85 -DRSLKRSLSGIKSFLKYLKKR---KITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 +S+ + L +SFL+Y + R K+ + I + + + S+P+A++ + A Sbjct: 181 RAQSIAKVL---RSFLQYARYRGLIKLDLAAAIPRVAHWSMA-SIPKAISPEYA-----R 231 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 L + + + R+ AIL LL GLR E +SLT +I + TL I GKG + + Sbjct: 232 RALASCDRRRPVGRRDYAILLLLARLGLRSGEVVSLTLDDIDWETGTLNIHGKGGQESPL 291 Query: 201 PLLPSVRKAILEY-----YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 PLL V +AI +Y D + L I P IRG V L R Sbjct: 292 PLLAPVGEAIADYLKNGRADSESRSVFLRINAP----IRGFKTEKAVCNVVRYALERAGI 347 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 L H RH+ AT +L G L I +L H +T+IY V+ Sbjct: 348 DSLRKGTHQFRHALATQMLRQGSSLAEISEVLRHKSPDSTRIYAKVD 394 >gi|89147484|gb|ABD62602.1| integrase [uncultured bacterium] Length = 163 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 41/68 (60%) Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R L+ V Q + Q R + T HTLRHSFATHLL NG ++R +Q +LGH + Sbjct: 95 RRHHLSEKVMQTALHQAVRESDIAKHVTVHTLRHSFATHLLLNGTNIREVQELLGHKNVE 154 Query: 294 TTQIYTNV 301 TT IYT+V Sbjct: 155 TTMIYTHV 162 >gi|89147602|gb|ABD62660.1| integrase [uncultured bacterium] Length = 163 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 41/61 (67%) Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 G+ Q +++ G+ H+LRHSFATHLLS G D+R++Q +LGH +STT IYT+ Sbjct: 102 GILQTALKRAVDVAGIVKRANCHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTH 161 Query: 301 V 301 V Sbjct: 162 V 162 >gi|154498614|ref|ZP_02036992.1| hypothetical protein BACCAP_02604 [Bacteroides capillosus ATCC 29799] gi|150272353|gb|EDM99547.1| hypothetical protein BACCAP_02604 [Bacteroides capillosus ATCC 29799] Length = 285 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 105/233 (45%), Gaps = 25/233 (10%) Query: 74 FISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK---SNSLPRAL 129 +IS T K + +RS+ L+ + SF YL T E +L+ ++ K + + P + Sbjct: 59 YISYLHTVKGLSNRSVNAKLASLHSFNLYLIAAGYTKEV-VLDKQDYLKVQLAYASPSTV 117 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 + ++ +L + R+ AI+ +L GLRISE L+L ++I ++ Sbjct: 118 SREEVERFRQEILERSG-------VRDYAIVTILAYAGLRISECLALRVEDISLPAREIK 170 Query: 190 I-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYI 247 + GKGDK+R+V V A+ EY P N P LF G L R Sbjct: 171 VRHGKGDKMRVVYFGDKVVNAVREYLRNRPKTGN-----PYLFPGRGDSHLTRSQVNRIF 225 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + S T HTLRH F ++ L NG + + + GH + TT +YTN Sbjct: 226 NEYSE------SITPHTLRHFFCSNALENGYTIADLANQAGHSNVHTTLLYTN 272 >gi|187935337|ref|YP_001886583.1| DNA integration/recombination protein [Clostridium botulinum B str. Eklund 17B] gi|187723490|gb|ACD24711.1| DNA integration/recombination protein [Clostridium botulinum B str. Eklund 17B] Length = 337 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 57/231 (24%), Positives = 104/231 (45%), Gaps = 12/231 (5%) Query: 71 IRAFISKRRT--QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 ++A I KR +K+ +L L IK F YL++ +I E+ + + +K Sbjct: 86 VKANIDKRTDIGEKVSTSTLNNYLRNIKVFFSYLEENQIIRENTVKKCKYIKNERKSKEQ 145 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 L + + N L+ + TK+ + R+ I L++ G+R++E L+LT ++ + T+ Sbjct: 146 LTDNEF-----NKLIKSMDLTKFHEYRDYVITNLIFDTGMRLNETLNLTINDVDFTRRTI 200 Query: 189 RIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245 I KG K R+V ++ K + + + P R L+ F+R Sbjct: 201 MIDSQISKGRKDRVVFYSQTMSKLLQRWLRFKDTMQETELLFPTQRT--NGVLSVSNFER 258 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 R + + S T H LR++FA L D+ ++ ILGH ++ T+ Sbjct: 259 NFRIYLKRAKINKSITPHGLRNNFARRFLLASSDIHTLSKILGHSSVTVTE 309 >gi|301596538|ref|ZP_07241546.1| IntI1 integrase [Acinetobacter baumannii AB059] Length = 200 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 31/65 (47%), Positives = 41/65 (63%) Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 113 FQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVL 172 Query: 303 SKNGG 307 G Sbjct: 173 KVGGA 177 >gi|291521086|emb|CBK79379.1| Site-specific recombinase XerD [Coprococcus catus GD/7] Length = 340 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 64/228 (28%), Positives = 103/228 (45%), Gaps = 14/228 (6%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 L+ ++++L Y I+ +S L+ ++ L EKQ + D L + Sbjct: 90 LAALRAYLWYASDMDISLQSIALSASHVP---FLKEPKKEKQIIQDEDMKALLAAPPDTQ 146 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210 R+ I+ LLY +RI+E L L ++ + ++ I GKGDK R V + + + Sbjct: 147 KGNRDRMIMILLYDTAIRITELLELKISSLKLTSVPSIHIHGKGDKERSVSITDATLSHL 206 Query: 211 LEYYDLCPFDLNLNIQLPLF-RGIRGK--PLNPG----VFQRYIRQLR-RYLGLPLSTTA 262 +Y L F + PLF I+G P++PG + +Y +R + LP Sbjct: 207 KKY--LRQFLSEMLPNQPLFYMKIKGSIAPMSPGNVSRIINKYADAIRPEHPNLPKHLHC 264 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 H R + AT L NG +L I ILGH TT+IY + + G+ M Sbjct: 265 HMFRRTRATGLYRNGVELEMISVILGHSSTETTRIYATPSIEMLGEAM 312 >gi|94442286|dbj|BAE93642.1| integron integrase [uncultured bacterium] Length = 162 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 42/69 (60%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 IR L+ Q+ +++ R G+ HTLRH FATHLL D+R++Q +LGH + Sbjct: 93 IRRHHLHESTLQKSVKKAARGCGINKRVGCHTLRHCFATHLLEASHDIRTVQELLGHAHV 152 Query: 293 STTQIYTNV 301 STT IYT+V Sbjct: 153 STTMIYTHV 161 >gi|301166953|emb|CBW26532.1| putative integrase/tyrosine recombinase [Bacteriovorax marinus SJ] Length = 317 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 72/286 (25%), Positives = 120/286 (41%), Gaps = 35/286 (12%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI---RAFISK---RRTQKIGDRSL 88 T +SYE D R F + E+ I + L I R F+ + R +++ Sbjct: 28 TRRSYEIDIRHFFS----WAHEQFNISSYGDLERDHIIKYRNFLQEAGGRDGSPCAPKTV 83 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNEKQALTLVDNVLLHTSH 147 R L+ + S+ +L +R I + + +++ ++ P AL+ Q L++ + T Sbjct: 84 ARKLAALSSYSDFLVERSILEFNPVTSIKRPRRDVKTPTNALSGTQVRELLEAIPGDTP- 142 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPS 205 + A+L + + GLR SE L+L ++ +++ L GKG KI L P Sbjct: 143 ----AGILHRALLMMFFTTGLRKSEILNLKFKDYREINEYRVLEFIGKGGKIGQKVLHPD 198 Query: 206 VRKAILEYYDLCPFDL-----NLNIQLPLFRGIRG--------KPLNPGVFQRYIRQLRR 252 +E DL ++ L + LF+ KPLNP I + Sbjct: 199 A----VELLDLYLVEMQRQGRELGQEDWLFQPSHNPTNPQNLNKPLNPRTINEIIDYYAK 254 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 +GL T H+ R +F LL NG D+ S+ + H + TTQ Y Sbjct: 255 KIGLNFKVTPHSCRATFIGELLENGVDIYSVAREVNHSSVKTTQEY 300 >gi|94442260|dbj|BAE93629.1| integron integrase [uncultured bacterium] Length = 162 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 42/69 (60%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 IR L+ Q+ +++ R G+ HTLRH FATHLL D+R++Q +LGH + Sbjct: 93 IRRHHLHESTLQKSVKKAARGCGINKRVGCHTLRHCFATHLLEANHDIRTVQELLGHAHV 152 Query: 293 STTQIYTNV 301 STT IYT+V Sbjct: 153 STTMIYTHV 161 >gi|310829805|ref|YP_003962162.1| hypothetical protein ELI_4257 [Eubacterium limosum KIST612] gi|308741539|gb|ADO39199.1| hypothetical protein ELI_4257 [Eubacterium limosum KIST612] Length = 304 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 79/305 (25%), Positives = 129/305 (42%), Gaps = 59/305 (19%) Query: 19 QNWLQNLEIE-RGLSKLTLQSYE-CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 + WL E + +G S T +SYE R FL L Y E I T +Q RAF Sbjct: 8 ETWLGEQEADVKGSSLKTYKSYERVHIRPFLGHL--YLAE---ITTKKQ------RAF-K 55 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-----RALNE 131 K+ + + D++++ LS +++ LK K++ T + +P +AL+E Sbjct: 56 KQLCESLADKTVRDILSYLRTLLKRAKQKGYTVCIKTPKTAVEWREKEVPDFQEHKALSE 115 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 K H K +D IL L GLR+ E L L +++ S L ++ Sbjct: 116 K------------LRHSQKPVDM---GIL-LAMSTGLRLGEVLGLRVKDVDLRASVLHVR 159 Query: 192 GKGDKI---------------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230 +I R +PL P+++ A+ Y N + + PL Sbjct: 160 ANRQRIYDPKTNTYPVREQTPKTQKSCRSIPLHPALKNALAHYLKNMG---NPDKEKPLI 216 Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290 +G+ + QR + +++ LGL T H+LRHSFAT L G + ++ +LGH Sbjct: 217 ANRQGRAYDARTLQRRFQAVKKELGLRPGVTFHSLRHSFATRALELGASIHTLSELLGHS 276 Query: 291 RLSTT 295 ++ T Sbjct: 277 SVAFT 281 >gi|229826012|ref|ZP_04452081.1| hypothetical protein GCWU000182_01376 [Abiotrophia defectiva ATCC 49176] gi|229789754|gb|EEP25868.1| hypothetical protein GCWU000182_01376 [Abiotrophia defectiva ATCC 49176] Length = 331 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 62/248 (25%), Positives = 109/248 (43%), Gaps = 23/248 (9%) Query: 63 IRQLSYTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121 +R+++ E+R ++S ++ + ++ I SF +L++ +S + + +K Sbjct: 92 VRKITTEEMRKYLSDYQKWNNCSNVTIDNVRRNISSFFSWLEEEDYILKSPMKRIHKIKT 151 Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 + ++++ L DN + R+ AI+ LLY G+R+ E ++L +I Sbjct: 152 KTVVKSTISDEGIEKLRDNCK----------EKRDLAIIDLLYSTGIRVGELVNLNIDDI 201 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-- 239 + + GKGDK R V + + EY D D N + + L P + Sbjct: 202 DFEGRECIVYGKGDKERRVYFDAKAKVHLKEYVD-TRSDTNSALFVTL-----DAPYDRL 255 Query: 240 --PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 GV R +R+L R L + H R S AT + G + +Q ILGH ++ TT Sbjct: 256 KISGVEIR-LRELGRSLNIE-RIHPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQ 313 Query: 298 YTNVNSKN 305 Y VN N Sbjct: 314 YAMVNQNN 321 >gi|114217149|dbj|BAF31251.1| integron integrase [uncultured bacterium] Length = 239 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 53/189 (28%), Positives = 88/189 (46%), Gaps = 37/189 (19%) Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKG--DKIRIVP--LLP 204 ++++ + LLYG G+ I+E L L +++ D T+ + +GKG D+ ++P L+P Sbjct: 50 RFLEGEHRLFAQLLYGTGMPITEGLLLRIKDLDFDHCTIILREGKGSEDRALMLPESLVP 109 Query: 205 SVR--------------------------------KAILEYYDLCPFDLNLNIQLPLFRG 232 S+R +A + F + + P Sbjct: 110 SLREQLSRARAWWLKDQAEGRNGVALPDALERKYPRAGHSWPWFWVFAHHTHSTDPRSGV 169 Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 +R + FQR ++ + G+ T HTLRHS AT LL +G D+R++Q +LGH + Sbjct: 170 VRRHHMYDQTFQRAFKRAVQQAGITKPATPHTLRHSLATALLRSGYDIRTVQDLLGHSDV 229 Query: 293 STTQIYTNV 301 STT IYT+V Sbjct: 230 STTMIYTHV 238 >gi|89147580|gb|ABD62649.1| integrase [uncultured bacterium] Length = 163 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 41/61 (67%) Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 G+ Q +++ G+ H+LRHSFATHLLS G D+R++Q +LGH +STT IYT+ Sbjct: 102 GILQTALKRAVDAAGIVKRANCHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTH 161 Query: 301 V 301 V Sbjct: 162 V 162 >gi|89147592|gb|ABD62655.1| integrase [uncultured bacterium] Length = 163 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 41/61 (67%) Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 G+ Q +++ G+ H+LRHSFATHLLS G D+R++Q +LGH +STT IYT+ Sbjct: 102 GILQTALKRAVDAAGIVKRANCHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTH 161 Query: 301 V 301 V Sbjct: 162 V 162 >gi|89147578|gb|ABD62648.1| integrase [uncultured bacterium] gi|89147604|gb|ABD62661.1| integrase [uncultured bacterium] Length = 163 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 41/61 (67%) Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 G+ Q +++ G+ H+LRHSFATHLLS G D+R++Q +LGH +STT IYT+ Sbjct: 102 GILQTALKRAVDAAGIVKHANCHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTH 161 Query: 301 V 301 V Sbjct: 162 V 162 >gi|255029354|ref|ZP_05301305.1| transposition regulatory protein tnpB [Listeria monocytogenes LO28] Length = 422 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 60/271 (22%), Positives = 114/271 (42%), Gaps = 31/271 (11%) Query: 61 QTIRQLSYTEIRAFISKRRT------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL 114 + IR L +I AFI R +K + L R + ++ FL+ L+ + E+ Sbjct: 9 KAIRNLERKDILAFIEWTRCYYAENNRKGLENHLNRCMGVLQKFLEELQLLE-HKEAPRK 67 Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174 ++R L P+ +Q ++ D+VL ++ I+++ + GLRIS+ L Sbjct: 68 SIRQLINPGDFPKYTQHRQVNSIPDSVLEQLFSNLNYLHPEVIPIVWITFKTGLRISDVL 127 Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRI----VPLLPSVRKAILEYYDLCPFDLNLNIQ---- 226 +LT + ++ + +Q K ++ +P+ + I C + N++ Sbjct: 128 TLTNKCLITVNESPYLQLDISKTKVHNHRIPIDTHIADIITFLAKRCELETNMDNNPKRY 187 Query: 227 -LPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTA----------HTLRHSFATHLL 274 P G R G+P G ++R+ L + + H RH++A LL Sbjct: 188 LFPRLSGTRKGRPFTQG----FVREELNTLAIKQNIAGEDGEIYHFRMHEFRHTYAVKLL 243 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 +NG D+ ++Q +L H T +Y + N Sbjct: 244 NNGADILTVQELLAHASPEMTMVYARYSDDN 274 >gi|217033667|ref|ZP_03439094.1| hypothetical protein HP9810_5g9 [Helicobacter pylori 98-10] gi|216943856|gb|EEC23293.1| hypothetical protein HP9810_5g9 [Helicobacter pylori 98-10] Length = 355 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 75/276 (27%), Positives = 128/276 (46%), Gaps = 29/276 (10%) Query: 48 IFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKR 105 +FL F Y ++ + +++ R LS ++ F+ + Q S+ + + ++ F YL +K+ Sbjct: 77 LFLFFDYFKDNLKLRSFRMLSEEQVIDFLFEL-AQNRKPSSMTKYVMYLRQFFDYLDRKK 135 Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165 + + N+ K +LPR LN K + LL S T + + RN IL ++ Sbjct: 136 HYNFDFALKNLAFAKTKENLPRHLNYKDLKAFL-KTLLEYSPATSF-EKRNKCILLIVIL 193 Query: 166 CGLRISEALSLTPQNIMDDQS--TLRIQGKGDK-----IRIVPLLPSVRKAILEYYDLCP 218 GLR E L++ ++I ++ ++ IQGKG K I+ L PS+ I + Y L Sbjct: 194 GGLRKCEVLNIELKHIQVEKQNYSILIQGKGRKERKAYIKKSLLEPSLNAWISDDYRLKY 253 Query: 219 FDLNLNIQLPLFRGIRGKPLN--------PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 F+ + LF+ + K N P +F+ + Q++ Y T H RHSFA Sbjct: 254 FN-----GVYLFKKDKQKAQNSLTLYNFIPLIFK--LAQIKHYK--QYGTGLHLFRHSFA 304 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 T + DL LGH L +T+IY + ++ Sbjct: 305 TLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHN 340 >gi|89147572|gb|ABD62645.1| integrase [uncultured bacterium] Length = 163 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 41/61 (67%) Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 G+ Q +++ G+ H+LRHSFATHLLS G D+R++Q +LGH +STT IYT+ Sbjct: 102 GILQTALKRAVDAAGIVKRANCHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTH 161 Query: 301 V 301 V Sbjct: 162 V 162 >gi|312792356|ref|YP_004025279.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179496|gb|ADQ39666.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 314 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 63/238 (26%), Positives = 106/238 (44%), Gaps = 31/238 (13%) Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 +Q I + L+ +K+F K+ E NIL KSN L L +K+A + Sbjct: 65 SQPIKPATYNLRLTYLKAFFKW------CVEENIL------KSNPL-EGLPKKKAEGRIV 111 Query: 140 NV-------LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-- 190 N+ LL + + R+ A++ L G+R EA SL ++ D TL++ Sbjct: 112 NIDTEILEKLLKLPDKNTFCGLRDYALILLTLDTGIRPKEAFSLLIEHF--DFKTLQVFI 169 Query: 191 ---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 K R++P+LP A+ + + + ++P+F + G+PL ++ I Sbjct: 170 PSNAAKTRVSRVLPILPVTANAVKKL--IAVRHPEWDEKVPVFCTVTGRPLTSDIWHGRI 227 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + LG+ + + LRH+FA L NGG S+Q LGH L T+ Y + + Sbjct: 228 EMYSKKLGVKIR--PYDLRHTFALLYLKNGGFELSLQKTLGHTTLEMTKRYVHFTQND 283 >gi|108799567|ref|YP_639764.1| phage integrase [Mycobacterium sp. MCS] gi|119868677|ref|YP_938629.1| phage integrase family protein [Mycobacterium sp. KMS] gi|108769986|gb|ABG08708.1| phage integrase [Mycobacterium sp. MCS] gi|119694766|gb|ABL91839.1| phage integrase family protein [Mycobacterium sp. KMS] Length = 373 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 76/180 (42%), Gaps = 21/180 (11%) Query: 144 HTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR------------- 189 H +W+ A R+S + Y GLR E + L + + R Sbjct: 173 HRKGSKRWLTALRDSTAFKIGYAFGLRRRELVMLDLTDFGPNPHVPRYGNFGAMTVRWAK 232 Query: 190 -IQGKGDKIRIV---PLLPSVRKAILEYYDLCPFDL--NLNIQLPLFRGIRGKPLNPGVF 243 +G G + R V P P V +L+Y+ +L + L+ RG L G Sbjct: 233 GTKGSGPRRRTVLTSPEFPWVVD-LLQYWCFEGRELFATADRSPALWPSERGDRLTLGAL 291 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 R RR GLP + H LRHS+ THLL G D +Q LGH STT +YT+V+S Sbjct: 292 GRSFTAFRRLAGLPPELSLHALRHSYTTHLLEAGYDPLFVQQQLGHSYASTTSLYTSVSS 351 >gi|89147612|gb|ABD62665.1| integrase [uncultured bacterium] Length = 163 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 30/64 (46%), Positives = 42/64 (65%) Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 +N Q ++ R + + + HTLRHSFATHLL NG D+R++Q +LGH +STT I Sbjct: 99 VNEKNLQNAVKHAVRKARINKAASCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMI 158 Query: 298 YTNV 301 YT+V Sbjct: 159 YTHV 162 >gi|89147512|gb|ABD62616.1| integrase [uncultured bacterium] Length = 163 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 41/68 (60%) Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 R L+ V Q + Q R + T HTLRHSFATHLL NG ++R +Q +LGH + Sbjct: 95 RRHHLSEKVMQTALHQAVRESDIAKHVTVHTLRHSFATHLLLNGTNIREVQELLGHKNVE 154 Query: 294 TTQIYTNV 301 TT IYT+V Sbjct: 155 TTMIYTHV 162 >gi|89147545|gb|ABD62632.1| integrase [uncultured bacterium] gi|89147549|gb|ABD62634.1| integrase [uncultured bacterium] gi|89147565|gb|ABD62642.1| integrase [uncultured bacterium] Length = 163 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 41/61 (67%) Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 G+ Q +++ G+ H+LRHSFATHLLS G D+R++Q +LGH +STT IYT+ Sbjct: 102 GILQTALKRAVDAAGIVKRANCHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTH 161 Query: 301 V 301 V Sbjct: 162 V 162 >gi|257784003|ref|YP_003179220.1| integrase family protein [Atopobium parvulum DSM 20469] gi|257472510|gb|ACV50629.1| integrase family protein [Atopobium parvulum DSM 20469] Length = 328 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 63/270 (23%), Positives = 120/270 (44%), Gaps = 22/270 (8%) Query: 41 CDTRQFLIFLAFYTEEKITIQT-IRQLSYTEIRAFI----SKRRTQKIGDRSLKRSLSGI 95 C R + + + I T RQ++ E+R+++ ++ KI +++R +S Sbjct: 66 CSERTISYYASVLHHYMVNITTGFRQVTTEEVRSYLIEYGQRKGVSKITVDNVRRVIS-- 123 Query: 96 KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155 S +L+ +S + ++ ++ ++ + + + T+ D R Sbjct: 124 -SLFSWLEAEDYILKSPVRRIKKIRSPRNIKPVITDDELETMRDGCTC----------VR 172 Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215 + A++ LL G+R+ E + L ++I + ++GKGDK R V + + EY + Sbjct: 173 DLALVDLLTSSGMRVGELVRLNREDIDFEGRQCVVRGKGDKERRVYFDARTKVHLHEYLN 232 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275 D N + + L G + + GV R +R L R LGLP H R + AT + Sbjct: 233 -SRHDENPALFISL-DGTKKRLEISGVELR-LRMLGRSLGLP-RVHPHKFRRTMATRAID 288 Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 G + +Q +LGH ++ TT Y V+ +N Sbjct: 289 KGMPIEQVQVLLGHSKIDTTLCYAMVDQEN 318 >gi|226326689|ref|ZP_03802207.1| hypothetical protein PROPEN_00542 [Proteus penneri ATCC 35198] gi|225204910|gb|EEG87264.1| hypothetical protein PROPEN_00542 [Proteus penneri ATCC 35198] Length = 237 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 97/198 (48%), Gaps = 15/198 (7%) Query: 5 NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64 ++PE +S + + +L+ +++ER LS +T+++Y RQ + KIT Q I Sbjct: 6 DIPETLSTAI----EQFLRYIQVERRLSPVTVENYH---RQLMALAQMMVAMKIT-QWI- 56 Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 L +R ++K + SL S ++SFL + + + + +R K Sbjct: 57 SLESQHVRMLLAKSNRSGLQPTSLALRFSALRSFLDWQVAQGMLEVNPAKGIRTPKSGRH 116 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 LP+ ++ + L+ N+ L + R+ +L ++YG GLR+SE +L +I + Sbjct: 117 LPKNMDVDEVSQLM-NIDLKDP-----LSVRDRTMLEVMYGAGLRLSELTNLNISDIDMN 170 Query: 185 QSTLRIQGKGDKIRIVPL 202 + +R+ GKG K R VPL Sbjct: 171 EGEVRVLGKGSKERKVPL 188 >gi|88857913|ref|ZP_01132555.1| super-integron integrase IntIA [Pseudoalteromonas tunicata D2] gi|88819530|gb|EAR29343.1| super-integron integrase IntIA [Pseudoalteromonas tunicata D2] Length = 167 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 40/64 (62%) Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 Q+ ++ R + + HTLRHSFATHLL G D+R++Q LGH + TTQIYT+V Sbjct: 93 LQKAVKSASRKAAIGKHVSCHTLRHSFATHLLQAGMDIRTVQEQLGHSDVKTTQIYTHVL 152 Query: 303 SKNG 306 + G Sbjct: 153 KQGG 156 >gi|194733804|ref|YP_002112919.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194709306|gb|ACF88529.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] Length = 159 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/66 (46%), Positives = 41/66 (62%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 78 TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 137 Query: 302 NSKNGG 307 G Sbjct: 138 LKVGGA 143 >gi|89147514|gb|ABD62617.1| integrase [uncultured bacterium] Length = 163 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/64 (48%), Positives = 41/64 (64%) Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 ++ V + I+ R + +AHT RHSFATHLL G D+R+IQS+LGH L TT I Sbjct: 99 VDQSVINKAIKVAVRKAEVSKKVSAHTFRHSFATHLLQRGTDIRTIQSLLGHRDLETTMI 158 Query: 298 YTNV 301 YT+V Sbjct: 159 YTHV 162 >gi|89147543|gb|ABD62631.1| integrase [uncultured bacterium] Length = 163 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 41/61 (67%) Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 G+ Q +++ G+ H+LRHSFATHLLS G D+R++Q +LGH +STT IYT+ Sbjct: 102 GILQTALKRAVDAAGIVKRANCHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTH 161 Query: 301 V 301 V Sbjct: 162 V 162 >gi|257440124|ref|ZP_05615879.1| integrase/recombinase, phage integrase family [Faecalibacterium prausnitzii A2-165] gi|257197476|gb|EEU95760.1| integrase/recombinase, phage integrase family [Faecalibacterium prausnitzii A2-165] Length = 327 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 59/253 (23%), Positives = 119/253 (47%), Gaps = 29/253 (11%) Query: 61 QTIRQLSYTEIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116 + ++Q++ ++R +++ +RR+ K+ +++R LS SF +L+ +S + + Sbjct: 86 KAVQQITTDDLRRYLTNYQVQRRSSKVTIDNIRRILS---SFFSWLEDEDFIVKSPVRRI 142 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 +K + + ++ + DN AR+ A++ LL G+R+ E ++L Sbjct: 143 HKVKTAKVVKDTYTDEALELMRDNC----------TTARDLAMVDLLASSGMRVGELVTL 192 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRG 232 ++I ++ + GKG+K R+V + + Y D P L ++++ P R Sbjct: 193 NREDINFNERECVVIGKGNKERLVYFDARTKIHLQNYLEGRTDENPA-LFVSLKAPFDRL 251 Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 + G GV R +R+L + L +P H R + AT + G + +Q +LGH ++ Sbjct: 252 MIG-----GVETR-LRELGKRLNIP-KVHPHKFRRTLATTAIDKGMPIEQVQQLLGHQKI 304 Query: 293 STTQIYTNVNSKN 305 TT Y V +N Sbjct: 305 DTTMHYAMVKQQN 317 >gi|78043985|ref|YP_361456.1| phage integrase family site specific recombinase [Carboxydothermus hydrogenoformans Z-2901] gi|77996100|gb|ABB14999.1| site-specific recombinase, phage integrase family [Carboxydothermus hydrogenoformans Z-2901] Length = 312 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 68/294 (23%), Positives = 126/294 (42%), Gaps = 30/294 (10%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 GL+ TL+ Y +F+ T +Y +R I + ++ R Sbjct: 30 GLAPRTLEDYRWHIEKFMEL------------TGANPTYEAVRKAILQHLSEPSSPRYRN 77 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 L +K+F + + + +R K+ S R + ++ V +L +T Sbjct: 78 IKLQYLKAFFNWCVREGYLPANPTDGIRKAKEDISNVRHV----SIEAVKKLLAQPDKKT 133 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI---VPLLPSV 206 + R+ ++ + G R SE L + P ++ D + ++ K RI + + P Sbjct: 134 -YAGLRDYCLMLVQIDTGARPSELLQIKPDDLNLDAREIYVRADVAKTRIGRTLVISPFT 192 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG-LPLSTTAHTL 265 +A++ + + P + ++PLF G+ L QR+ R ++RY + T + L Sbjct: 193 VQALMRFLKIRPS--WWSNEVPLFASENGRQLTA---QRWSRIVKRYCEEAGVKVTPYGL 247 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 RH+FA L GGD S+Q ILGH L+ T+ Y ++ D + EI+++ P Sbjct: 248 RHTFAIEFLKGGGDPFSLQRILGHTDLTMTRRYVRLSQ----DDIKEIHEKASP 297 >gi|254286498|ref|ZP_04961455.1| Int [Vibrio cholerae AM-19226] gi|150423447|gb|EDN15391.1| Int [Vibrio cholerae AM-19226] Length = 345 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/145 (32%), Positives = 70/145 (48%), Gaps = 19/145 (13%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 I + G RISEALSL I + + T ++ KG +IR VP+ ++ K I+ Sbjct: 204 IAKICLATGARISEALSLERSQISEFKLTF-VETKGKRIRSVPISENLYKEIM------- 255 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ-LRRYLGLPLSTTAHTLRHSFATHLLSNG 277 L + +F G RYI++ L Y+ P H LRH+FATH + N Sbjct: 256 --LASSSSTKIFSTTYGSA------HRYIKKALPDYV--PEGQATHVLRHTFATHFMMNR 305 Query: 278 GDLRSIQSILGHFRLSTTQIYTNVN 302 GD+ +Q ILGH ++ T Y + + Sbjct: 306 GDILILQRILGHQKIEQTMAYAHFS 330 >gi|297624037|ref|YP_003705471.1| integrase family protein [Truepera radiovictrix DSM 17093] gi|297165217|gb|ADI14928.1| integrase family protein [Truepera radiovictrix DSM 17093] Length = 292 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 64/284 (22%), Positives = 124/284 (43%), Gaps = 34/284 (11%) Query: 30 GLSKLTLQSYECDTRQFLIFL--AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87 GL+ +L+ +E + F +L ++ E T T IR ++ ++ + + Sbjct: 16 GLTTRSLEWHETSLKSFTRWLEACSHSAEPETWNP------TLIREYVVYLQSSGLSGWT 69 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD-NVLLHTS 146 + + + +F ++L + + T ++ +R K + ++Q T + LL S Sbjct: 70 VTNKVQSLLAFTRWLHEEEFTEKNVAERVRKPKPPQT------QRQPFTDAELRRLLKAS 123 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 + R++AI+ LL +R SE +L + + DQ +++ GKG+K R+VP P Sbjct: 124 QSS----IRDAAIVALLLDTAIRASELCTLKLSDCLLDQCLIKVMGKGNKERVVPHSPQT 179 Query: 207 RKAILEY-----YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 K + ++ P+ +F R + P + I ++ + Sbjct: 180 GKLVSKWLLKGRASEGPY---------VFHTERSERFTPRSLHKLIERIGNRAAVD-DCY 229 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 H LRHS A +L NG D ++Q +LGH L+ T Y +N+ + Sbjct: 230 PHRLRHSAAITMLRNGMDPLTLQRMLGHTSLNMTMRYVALNTTD 273 >gi|89147586|gb|ABD62652.1| integrase [uncultured bacterium] Length = 163 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 41/61 (67%) Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 G+ Q +++ G+ H+LRHSFATHLLS G D+R++Q +LGH +STT IYT+ Sbjct: 102 GILQTALKRAVDAAGIVKHANCHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTH 161 Query: 301 V 301 V Sbjct: 162 V 162 >gi|210612745|ref|ZP_03289460.1| hypothetical protein CLONEX_01662 [Clostridium nexile DSM 1787] gi|210151438|gb|EEA82446.1| hypothetical protein CLONEX_01662 [Clostridium nexile DSM 1787] Length = 356 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 69/298 (23%), Positives = 125/298 (41%), Gaps = 32/298 (10%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAF-------YTEEKITIQTIRQLSYTEIRAFISKRR 79 +E S T SY D R F FL YT + T+Q + ++ +I ++ + Sbjct: 38 VEPTTSAKTRISYAYDIRVFFHFLIENNPIYHDYTTTQFTLQDLERVEPIDIEEYLEYLK 97 Query: 80 TQKI--------GDRSLKRSLSGIKSFLKYLKKRKITTESN---ILNMRNLKKSNSLPRA 128 K G++ L R S ++SF +Y + ++ E N ++M L + Sbjct: 98 VYKADDNQVITNGEKGLARKFSSLRSFYRYFYRHQMI-EKNPTIFVDMPKLHDKAIIRLD 156 Query: 129 LNEKQAL-TLVDNVLLHTSHETKW----IDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 ++E L V+N + + K R+ AIL LL G G+R+SE + L +I Sbjct: 157 IDEVALLLDYVENCGKELTGQKKVYYEKTKTRDLAILTLLLGTGIRVSECVGLDINDIDF 216 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPL 238 + +++ KG ++ VR A+ Y + P + N LF + K + Sbjct: 217 KNNGIKVTRKGGSEMVIYFGEEVRNALENYLETTRASATPLPDHEN---ALFLSTQRKRM 273 Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + +++ + + T H LR ++ T L GD+ + +LGH ++TT+ Sbjct: 274 GVQAIENMVKKYAKQVTPNKKITPHKLRSTYGTSLYKETGDIYLVADVLGHKDVNTTK 331 >gi|153213639|ref|ZP_01948912.1| Int [Vibrio cholerae 1587] gi|124115838|gb|EAY34658.1| Int [Vibrio cholerae 1587] Length = 345 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/145 (32%), Positives = 70/145 (48%), Gaps = 19/145 (13%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 I + G RISEALSL I + + T ++ KG +IR VP+ ++ K I+ Sbjct: 204 IAKICLATGARISEALSLERSQISEFKLTF-VETKGKRIRSVPISENLYKEIM------- 255 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ-LRRYLGLPLSTTAHTLRHSFATHLLSNG 277 L + +F G RYI++ L Y+ P H LRH+FATH + N Sbjct: 256 --LASSSSAKIFSTTYGSA------HRYIKKALPDYV--PEGQATHVLRHTFATHFMMNR 305 Query: 278 GDLRSIQSILGHFRLSTTQIYTNVN 302 GD+ +Q ILGH ++ T Y + + Sbjct: 306 GDILILQRILGHQKIEQTMAYAHFS 330 >gi|94442272|dbj|BAE93635.1| integron integrase [uncultured bacterium] Length = 162 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 3/98 (3%) Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 PS K+ + YY F N P ++ ++ Q+ I++ + +H Sbjct: 67 PSAAKSWMWYY---AFPSNQRCFAPDLGTMKRHHVHQTSVQKAIKRAVTRCNINKRVGSH 123 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 RHSFATHLL NG D+R+IQ +LGH +STT IYT+V Sbjct: 124 AFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161 >gi|89147532|gb|ABD62626.1| integrase [uncultured bacterium] Length = 163 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 41/61 (67%) Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 G+ Q +++ G+ H+LRHSFATHLLS G D+R++Q +LGH +STT IYT+ Sbjct: 102 GILQTALKRAVDAAGIVKRANCHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTH 161 Query: 301 V 301 V Sbjct: 162 V 162 >gi|89147626|gb|ABD62672.1| integrase [uncultured bacterium] Length = 162 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/50 (56%), Positives = 36/50 (72%) Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 R G+ + T HT RHSFATHLL G D+R++Q +LGH +STT IYT+V Sbjct: 112 RVSGIGKAATCHTFRHSFATHLLERGQDIRTVQELLGHKDVSTTMIYTHV 161 >gi|333011635|gb|EGK31048.1| tyrosine recombinase xerD domain protein [Shigella flexneri K-227] gi|333011749|gb|EGK31158.1| tyrosine recombinase xerD domain protein [Shigella flexneri K-227] Length = 91 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 11 FQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV- 69 Query: 303 SKNGGDWMMEIYDQTHPSITQK 324 K GG + D P +++ Sbjct: 70 LKVGGAGVRSPLDALPPLTSER 91 >gi|327403680|ref|YP_004344518.1| integrase family protein [Fluviicola taffensis DSM 16823] gi|327319188|gb|AEA43680.1| integrase family protein [Fluviicola taffensis DSM 16823] Length = 413 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 16/162 (9%) Query: 162 LLYGC--GLRISEALSLTPQNIMD----DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215 L+ C GL ++ L +I ++ + + K D + +P+LP V + I +Y D Sbjct: 249 FLFSCFTGLAYADVKELKKSDIQKVISAEKWIMTKRKKTDTVCNIPVLPPVEELIQKYKD 308 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274 P N + LP+ I + +N Y++++ G+ T H RH+FAT + L Sbjct: 309 D-PRCENADCLLPV---ISNQKMNS-----YLKEIADVCGIQKELTFHIARHTFATTVTL 359 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 +NG + S+ +LGH L TTQ Y + K GD M ++++ Sbjct: 360 TNGVSIESVSKMLGHTNLKTTQHYAKILDKKIGDDMRSLHEK 401 >gi|228967125|ref|ZP_04128161.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar sotto str. T04001] gi|228792494|gb|EEM40060.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar sotto str. T04001] Length = 141 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 69/132 (52%), Gaps = 9/132 (6%) Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--LL 143 ++L R ++ I+SF ++L + + +++ + LP+ L+ VD V LL Sbjct: 12 KTLARHIASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLS-------VDEVEALL 64 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 T T R+ A+L LLY GLR+SE ++L +++ +R GKG+K RI+PL Sbjct: 65 QTPKMTSAFGIRDKAMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLG 124 Query: 204 PSVRKAILEYYD 215 +AI +Y + Sbjct: 125 SLATEAIQKYIE 136 >gi|295401430|ref|ZP_06811400.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93] gi|294976480|gb|EFG52088.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93] Length = 304 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 68/288 (23%), Positives = 132/288 (45%), Gaps = 29/288 (10%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87 E+G S+ T+ SY D F L + ++ +T IR+ I+ ++ + + + Sbjct: 11 EKGASQNTIISYTNDLNMFFHDLHIHPDDYVTPADIRKW----IQHMLNPAEGKPLAIST 66 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA---LNEKQALTLVDNVLLH 144 + R L+ ++SF + +R ++ + ++++LK ++ L E++ L+ + Sbjct: 67 INRRLNSLRSFYAWAVERHYIEQNPMKDIQDLKTADEDYEKIMWLTEEEFEDLLQR-MRK 125 Query: 145 TSHETKWIDA-----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 ++ +D R+ A++YLL GLR+ E +L ++ + +RI GKG K+R Sbjct: 126 KPVRSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEMKRIRIVGKGMKVRT 185 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-------LFRGIRGKPLNPGVFQRYIRQLRR 252 VP + ++ A LE D F + + P +F R P R I+++ Sbjct: 186 VP-ISNILLAELE--DWLKFRAEMAKKKPHVAVSPYVFYSQRS----PKFSVRGIQRMIE 238 Query: 253 YLGLP-LSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRLSTTQIY 298 LP T H RH+F +L + D+ ++ + GH ++TT Y Sbjct: 239 SYSLPNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRY 286 >gi|89147681|gb|ABD62699.1| integrase [uncultured bacterium] Length = 163 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 43/69 (62%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 +R L+ V QR ++ G+ + HT RHSFATHLL +G D+R+IQ +LGH + Sbjct: 94 LRRHHLHETVLQRAVKSAVLAAGVTKLASCHTFRHSFATHLLESGYDIRTIQKLLGHRDV 153 Query: 293 STTQIYTNV 301 TT IYT+V Sbjct: 154 RTTMIYTHV 162 >gi|323138766|ref|ZP_08073831.1| integrase family protein [Methylocystis sp. ATCC 49242] gi|322396013|gb|EFX98549.1| integrase family protein [Methylocystis sp. ATCC 49242] Length = 409 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 74/307 (24%), Positives = 125/307 (40%), Gaps = 36/307 (11%) Query: 5 NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64 +P + ++ E W + ++GL++ TL +Y + F+A E+ Sbjct: 113 RVPVLPGPPIVGEYMVWARE---QQGLAETTLATY---ASAIIPFVAALGEDPAAYDAAA 166 Query: 65 QLSYTEIRA-FISKRRTQKIGDRSLKRSLSGIKSFLKYL--KKRKITTESNILNMRNLKK 121 Y RA +S R IG I++FL++L R + + Sbjct: 167 IRGYMLGRAGAVSVARLNGIG--------VAIRAFLRFLIAMGRCPPGRDRAMPQAAEWR 218 Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 S+PR L E + ++ E + R+ AI+ LL G+R SE L +I Sbjct: 219 LASIPRFLPEDD----IARIIAACESERR---LRDRAIILLLVRLGMRASEVARLGFDDI 271 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGK 236 Q ++R+ GKG + ++PL V A++ Y + L L PL + Sbjct: 272 DWRQGSIRLHGKGRREELLPLSQEVGDALIAYIECARPAFAARALFLTESAPL------R 325 Query: 237 PLNPGVFQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 P++ G + +R+ G+ AH LRHS AT +L +G L + +L H + T Sbjct: 326 PIDRGTIKCVVRRALERAGVESRFKGAHVLRHSAATSMLRHGVSLAGVSIVLRHRSPAMT 385 Query: 296 QIYTNVN 302 Y V+ Sbjct: 386 VHYAKVD 392 >gi|223369864|gb|ACM88800.1| integrase [uncultured bacterium] Length = 163 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|94442270|dbj|BAE93634.1| integron integrase [uncultured bacterium] Length = 162 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 42/69 (60%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 IR L+ Q+ +++ R G+ HTLRH FATHLL D+R++Q +LGH + Sbjct: 93 IRRHHLHESTLQKSVKKAARGCGINKRVGCHTLRHCFATHLLEANHDIRTVQELLGHAHV 152 Query: 293 STTQIYTNV 301 STT IYT+V Sbjct: 153 STTMIYTHV 161 >gi|113867686|ref|YP_726175.1| phage integrase family protein [Ralstonia eutropha H16] gi|113526462|emb|CAJ92807.1| phage integrase family protein [Ralstonia eutropha H16] Length = 566 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 73/303 (24%), Positives = 124/303 (40%), Gaps = 40/303 (13%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 +E ER LS LT + D + F+ + + R + + R F T + Sbjct: 256 VERERPLSSLTTE----DATAYRSFVRRPAPRERWVGPARPRTSPDWRPF-----TGSLS 306 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 RS +LS + + ++L +++ + ++ S+ AL+ A T + +L+ Sbjct: 307 ARSTAHALSVLGAMFRWLIQQRYVLANPFAGIKVRGGGRSV--ALDSSHAFTEGEWLLIR 364 Query: 145 TSHET-----KWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDDQST---LRIQGK 193 T + W + ++L Y GLR SE + T ++ D L++ GK Sbjct: 365 TIADGLEWSYGWDGPAAQRLRFVLDFGYATGLRASELVGATLGDVESDPHGDHWLKLVGK 424 Query: 194 GDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNP-------GVF 243 G K V L P R A+ Y L + PL G+ P + GV Sbjct: 425 GAKAGKVALPPLARLALDSYLVERGLPVTPARWDPHTPLIGGLGQDPASGITGTRLWGVL 484 Query: 244 QRYIRQLRRYLGLPLSTTA--------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 +R+ RQ+ + + A H +RH+ ATH L+ G +L +++ L H +STT Sbjct: 485 RRFFRQVADLIQADHPSAADKLRQASPHWMRHTHATHALARGAELTTVRDNLRHASISTT 544 Query: 296 QIY 298 IY Sbjct: 545 SIY 547 >gi|89147349|gb|ABD62535.1| integrase [uncultured bacterium] Length = 163 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 39/60 (65%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 Q+ ++ R G+ + HTLRHSFAT LL NG D+R+IQ +LGH L TT IYT+V Sbjct: 103 ALQKAVKSAIRRAGINKPGSCHTLRHSFATRLLENGYDVRTIQELLGHADLQTTMIYTHV 162 >gi|94442258|dbj|BAE93628.1| integron integrase [uncultured bacterium] Length = 162 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 42/69 (60%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 IR L+ Q+ +++ R G+ HTLRH FATHLL D+R++Q +LGH + Sbjct: 93 IRRHHLHESTLQKSVKKAARGCGINKRVGCHTLRHCFATHLLEANHDIRTVQELLGHAHV 152 Query: 293 STTQIYTNV 301 STT IYT+V Sbjct: 153 STTMIYTHV 161 >gi|38234408|ref|NP_940175.1| putative phage integrase [Corynebacterium diphtheriae NCTC 13129] gi|38200671|emb|CAE50367.1| Putative phage integrase [Corynebacterium diphtheriae] Length = 271 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/221 (22%), Positives = 96/221 (43%), Gaps = 30/221 (13%) Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 G + K + + ++ F + + + + + + + + S+PR + L+ + + Sbjct: 63 GPAARKSARTSVRVFFAWAVREGLIETNPAITIIPVPQVRSVPRPCPD----ALISDAM- 117 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVP 201 K R + ++ CGLR E + ++ + LR++GKG R++P Sbjct: 118 ------KVAAPRVRLAIEIMATCGLRRDECARVRAGDVEPVGQGWILRVRGKGGHERLIP 171 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 P + + I Q +F G ++ G + I + LP + T Sbjct: 172 CPPHLARRIAA------------AQGWVFPGGANGHVSAGWLGKLISR-----ALPGAWT 214 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 H +RH +AT + DLR++Q +LGH ++TTQIYT V+ Sbjct: 215 PHKIRHRYATVAYGDTYDLRAVQELLGHASVATTQIYTAVS 255 >gi|238924762|ref|YP_002938278.1| site-specific recombinase, phage integrase family [Eubacterium rectale ATCC 33656] gi|238876437|gb|ACR76144.1| site-specific recombinase, phage integrase family [Eubacterium rectale ATCC 33656] Length = 336 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 63/249 (25%), Positives = 110/249 (44%), Gaps = 23/249 (9%) Query: 62 TIRQLSYTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 ++R+++ EIR ++S ++ + ++ I SF +L++ +S + + +K Sbjct: 96 SVRKITTEEIREYLSDYQKLNNCSNVTIDNVRRNISSFFSWLEEEDYILKSPMRRIHKIK 155 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 + ++++ L DN + R+ AI+ LLY G+R+ E ++L + Sbjct: 156 TKTVVKSVISDEGIEKLRDNCN----------EKRDLAIIDLLYSTGIRVGELVNLNIDD 205 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN- 239 I + + GKGDK R V + + +Y D D N + + L P + Sbjct: 206 IDLEGRECIVYGKGDKERRVYFDAKAKVHLKDYID-TRTDKNKALFVTL-----DAPHDR 259 Query: 240 ---PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 GV R +R+L R L L H R S AT + G + +Q ILGH ++ TT Sbjct: 260 LKISGVEIR-LRKLGRKLSLE-RVHPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTM 317 Query: 297 IYTNVNSKN 305 Y VN N Sbjct: 318 QYAMVNQNN 326 >gi|89147442|gb|ABD62581.1| integrase [uncultured bacterium] Length = 163 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 43/69 (62%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 +R ++ Q+ I+ R + + + HTLRHSFATHLL G D+R+IQ +LGH + Sbjct: 94 VRRHHIHQNTLQKQIKTAARKSTIVKNVSVHTLRHSFATHLLEKGYDIRTIQELLGHANV 153 Query: 293 STTQIYTNV 301 TT IYT+V Sbjct: 154 QTTMIYTHV 162 >gi|325288245|ref|YP_004264426.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271] gi|324963646|gb|ADY54425.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271] Length = 341 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 69/301 (22%), Positives = 129/301 (42%), Gaps = 19/301 (6%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR--QLSYTEIRAFI 75 R L+ L +R S+ T++SY F+++L TE++++++ IR ++ I F+ Sbjct: 9 RSFLLEYLPNQRCFSENTVRSYRQALNLFILYLR--TEQRMSVKQIRFDAMNREMILNFL 66 Query: 76 SKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 + G + + L ++SF Y + T + + ++N+ + + Sbjct: 67 DWLENDRHCGVNTRNQRLMVLRSFFNYAGELDCTQIALSVTVQNIPIKTPQSKVVEYLSE 126 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQG 192 L VLL + TK RN + L+Y R E L + ++ + + G Sbjct: 127 TAL--EVLLKQPYPTKRTGLRNLFFMVLMYDTAARCGELLDMKVRDLRVKVQHPIAYLHG 184 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF----RGIRGKPLNPGVFQRYIR 248 KG+K R VPLL + Y + + + PLF GI+ +P++ +++ Sbjct: 185 KGNKTRTVPLLTGTVQHCERYLRTFHTNEPADSEKPLFYTVIHGIQ-QPMSADTVALFLK 243 Query: 249 Q-----LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + R +P AH LRH+ A HL G + + LGH TT++Y ++ Sbjct: 244 KYGDLACRACPEVPPHIHAHMLRHTRAMHLYHQGMPMMLLSEYLGHASEETTKVYAYADT 303 Query: 304 K 304 + Sbjct: 304 E 304 >gi|223369830|gb|ACM88784.1| integrase [uncultured bacterium] Length = 163 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|126660459|ref|ZP_01731568.1| Tn554, transposase A [Cyanothece sp. CCY0110] gi|126618272|gb|EAZ89032.1| Tn554, transposase A [Cyanothece sp. CCY0110] Length = 368 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 99/224 (44%), Gaps = 48/224 (21%) Query: 96 KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155 KSFL ++ K K ++ +L + K+ + P L +Q TLV+ + R Sbjct: 141 KSFLHHISKGK-EVKTRLLKV---KEPKTFPGCLTPEQVNTLVEAC----------CNLR 186 Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS---------- 205 + ++ LLY GLRI E L L +++ + G ++I+++P + + Sbjct: 187 DKFLIRLLYESGLRIGEGLGLRHEDM--------VTGNNNQIKVIPRVHNINYVRAKAGV 238 Query: 206 -----VRKAILEYY-----DLCPFDLNLNIQLPLFR----GIRGKPLNPGVFQRYIRQLR 251 V K ++++Y D P D++ + + + G G PLN R+L Sbjct: 239 ERTVHVNKELMQWYSAYLIDEYPEDIDCDFVFIVIKAPGKGKIGNPLNYKTVDSLFRRLS 298 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 + + T H LRH+ AT L+ G D+ +Q LGH + TT Sbjct: 299 K--KTRIEVTPHLLRHTHATELIRAGWDMSYVQKRLGHADIQTT 340 >gi|91780851|ref|YP_556058.1| putative phage integrase [Burkholderia xenovorans LB400] gi|91693511|gb|ABE36708.1| Putative phage integrase [Burkholderia xenovorans LB400] Length = 266 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 97/210 (46%), Gaps = 28/210 (13%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 SL +++G+K F R I+ M+ ++ LP L+ + L++ + Sbjct: 71 SLNHAITGLKFFFTVTLDRP----ELIVRMQPVRVPRILPVVLSPDEVRRLIEAAG-NLK 125 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS 205 H+T L + YG GLR SE ++L ++ ++ TLRI QGKG + R L P Sbjct: 126 HQTA---------LSVAYGAGLRASEVVALKVTDVDSERMTLRIEQGKGRRDRYAMLSPV 176 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS------ 259 + + + ++ + + LF G+ PL+ Q RQL R + Sbjct: 177 LLERLRVWWRMARAQGKMFDGGWLFPGL--DPLD----QLSTRQLNRAIHAAAEAAHIDK 230 Query: 260 -TTAHTLRHSFATHLLSNGGDLRSIQSILG 288 + HTLRHSFATHLL D+R IQ +LG Sbjct: 231 RVSMHTLRHSFATHLLEQKVDIRVIQVLLG 260 >gi|17975106|ref|NP_536628.1| Int [Vibrio phage K139] gi|153820858|ref|ZP_01973525.1| Int [Vibrio cholerae B33] gi|165970235|ref|YP_001650866.1| putative integrase [Vibrio phage kappa] gi|229512070|ref|ZP_04401549.1| integrase [Vibrio cholerae B33] gi|229519206|ref|ZP_04408649.1| integrase [Vibrio cholerae RC9] gi|229607239|ref|YP_002877887.1| integrase [Vibrio cholerae MJ-1236] gi|254849315|ref|ZP_05238665.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|4530503|gb|AAD22068.1| Int [Vibrio phage K139] gi|126521650|gb|EAZ78873.1| Int [Vibrio cholerae B33] gi|165292212|dbj|BAF98794.1| putative integrase [Vibrio phage kappa] gi|229343895|gb|EEO08870.1| integrase [Vibrio cholerae RC9] gi|229352035|gb|EEO16976.1| integrase [Vibrio cholerae B33] gi|229369894|gb|ACQ60317.1| integrase [Vibrio cholerae MJ-1236] gi|254845020|gb|EET23434.1| conserved hypothetical protein [Vibrio cholerae MO10] Length = 345 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/145 (32%), Positives = 70/145 (48%), Gaps = 19/145 (13%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 I + G RISEALSL I + + T ++ KG +IR VP+ ++ K I+ Sbjct: 204 IAKICLATGARISEALSLERSQISEFKLTF-VETKGKRIRSVPISENLYKEIM------- 255 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ-LRRYLGLPLSTTAHTLRHSFATHLLSNG 277 L + +F G RYI++ L Y+ P H LRH+FATH + N Sbjct: 256 --LASSSSTKIFSTTYGSA------HRYIKKALPDYV--PEGQATHVLRHTFATHFMMNR 305 Query: 278 GDLRSIQSILGHFRLSTTQIYTNVN 302 GD+ +Q ILGH ++ T Y + + Sbjct: 306 GDILILQRILGHQKIEQTMAYAHFS 330 >gi|323973807|gb|EGB68981.1| phage integrase [Escherichia coli TA007] Length = 336 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 61/242 (25%), Positives = 104/242 (42%), Gaps = 41/242 (16%) Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN----MRNLK 120 Q++ + I + ++RR + I ++ R L + L ES + N R K Sbjct: 100 QITKSLITQYCAQRRGEGIKPTTINRDLITLGGMFTTL------IESELYNGEHPFRGFK 153 Query: 121 KSNSLPRALNEKQALTL--VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178 K L E LTL +D +L S + N I L G R EA L Sbjct: 154 K---LKEQTAETGYLTLEEIDALLAALSGD-------NRKIAVLCLSTGARWGEAARLKA 203 Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238 +N++ ++ + ++ K + R VP+ V ++ RG Sbjct: 204 ENVIHNRVSF-VKTKTNTPRTVPISDDVAAYVVGKT----------------RGFLFPEA 246 Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + F+R +++++ LP H LRHSFATH + NGG++ ++Q ILGH +++ T +Y Sbjct: 247 SYADFRRTLKEVKP--DLPAGQATHALRHSFATHFMINGGNIITLQRILGHTKIAQTMVY 304 Query: 299 TN 300 + Sbjct: 305 AH 306 >gi|223369862|gb|ACM88799.1| integrase [uncultured bacterium] Length = 163 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|89147390|gb|ABD62555.1| integrase [uncultured bacterium] Length = 163 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|22096306|gb|AAM92159.1| TnpA-like protein [Staphylococcus aureus] Length = 361 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 65/216 (30%), Positives = 100/216 (46%), Gaps = 36/216 (16%) Query: 96 KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155 K FL ++ K K + N+L +R KK + R LN + +V+ HT R Sbjct: 141 KGFLHHVSKGK-PYKRNVLKLREKKK---MIRTLNHSEVKEIVEAC--HT--------LR 186 Query: 156 NSAILYLLYGCGLRISEALSLTPQNIM--DDQSTL-----RIQGKGDKIRIVPLLPSVRK 208 + I+ L+Y G+RI E LSL +I+ D+Q + + G K+R ++ V K Sbjct: 187 DKLIIMLMYEGGMRIGEVLSLRLADIVTWDNQVHITPREESLNGAYIKLRKERVI-HVSK 245 Query: 209 AIL---------EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 ++ EYYD D + + L G+PL +R+L + G+ Sbjct: 246 ELMALYTDYLVHEYYDELEHDY---VFIALKESHFGQPLKYQSVLDLVRRLNKRTGIVF- 301 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 T HTLRH+ AT L+ NG D +Q LGH ++ TT Sbjct: 302 -TPHTLRHTHATELIRNGWDAAYVQKRLGHAQVQTT 336 >gi|317481410|ref|ZP_07940477.1| phage integrase [Bacteroides sp. 4_1_36] gi|316902395|gb|EFV24282.1| phage integrase [Bacteroides sp. 4_1_36] Length = 410 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 129/293 (44%), Gaps = 37/293 (12%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ 81 L + + RG K TL+ Y FL +L + I +Q I+Q++ + F+S ++ Sbjct: 115 LHLISLRRG--KNTLKHYRSCLGNFLYYL-----DMIGVQNIKQITEEHVIRFLSSQQLN 167 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVD 139 + +++LS I+ + ++ I L+K +P ++ + +++ Sbjct: 168 R------EKTLSIIRCLFLFWRQENIIDGRFEEFFATYKLRKKERIPSYYTTEE-IKVIE 220 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKI 197 N + +S K RN A++ L GLR S+ +SL +I +D LRIQ G I Sbjct: 221 NSVSRSSALGK----RNYAMILLASRLGLRASDIMSLKFSDIDWDNDLIRLRIQKTGKTI 276 Query: 198 RIVPLLPSVRKAILEYYDLC-PFDLNLNIQL----PLFRGIRGKPLNPGVFQRYIRQLRR 252 + PLL V AI++Y P + NI L P + I ++ R Sbjct: 277 EL-PLLADVGNAIIDYLRYGRPASTSQNIFLSSRAPYIAATQSMVCGN------INKIIR 329 Query: 253 YLGLPLSTT---AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 G+ + H+LRHS A+++L NG + I +LGH TT Y +N Sbjct: 330 LSGVNIDKKRHGPHSLRHSLASNMLENGATMPIISEVLGHRNTETTMTYLKIN 382 >gi|153810222|ref|ZP_01962890.1| hypothetical protein RUMOBE_00603 [Ruminococcus obeum ATCC 29174] gi|153811732|ref|ZP_01964400.1| hypothetical protein RUMOBE_02125 [Ruminococcus obeum ATCC 29174] gi|153811869|ref|ZP_01964537.1| hypothetical protein RUMOBE_02262 [Ruminococcus obeum ATCC 29174] gi|149832003|gb|EDM87088.1| hypothetical protein RUMOBE_02262 [Ruminococcus obeum ATCC 29174] gi|149832135|gb|EDM87220.1| hypothetical protein RUMOBE_02125 [Ruminococcus obeum ATCC 29174] gi|149833401|gb|EDM88482.1| hypothetical protein RUMOBE_00603 [Ruminococcus obeum ATCC 29174] Length = 345 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 106/221 (47%), Gaps = 23/221 (10%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL---LHTSHE 148 ++ I+++L Y I+ +S L + + ++ +K+ L D+ L L Sbjct: 93 VAAIRAYLNYASDMDISVQSVALAISQISPCKTI-----KKEKPILSDDALAAILSAPPN 147 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSV 206 TK+ R+ AIL LLY +RISE L++ +I + + I GKG+K R + L Sbjct: 148 TKF-GVRDRAILILLYDTAVRISELLNIRLCDIAMESKYPNIFITGKGNKERTIQLTAKA 206 Query: 207 RKAILEYYDLCPFDLNLNIQLPLF----RGIRGKPLNPGVFQRYIRQL-----RRYLGLP 257 + + EY + + N + + LF +G+ + ++ G QR I++ + + LP Sbjct: 207 VEHLREYIRV--YHSNSSKEAYLFSTTIKGVTDR-MSVGNVQRIIKKYAALVSEKGVSLP 263 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 S H R + AT+L +G + + ++LGH R TT+ Y Sbjct: 264 DSVHCHMFRRTRATNLYQDGIAIELVSTVLGHARTDTTKSY 304 >gi|89147520|gb|ABD62620.1| integrase [uncultured bacterium] Length = 163 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 42/69 (60%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 +R L+ QR ++ + T H LRHSFATHLL NG D+R++Q +LGH + Sbjct: 94 VRRHHLDKVTVQRKVKAAAERARIGKVVTPHVLRHSFATHLLENGYDIRTVQELLGHKDV 153 Query: 293 STTQIYTNV 301 STT IYT+V Sbjct: 154 STTMIYTHV 162 >gi|134045801|ref|YP_001097287.1| phage integrase family protein [Methanococcus maripaludis C5] gi|132663426|gb|ABO35072.1| phage integrase family protein [Methanococcus maripaludis C5] Length = 287 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 75/284 (26%), Positives = 120/284 (42%), Gaps = 25/284 (8%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 LE LSK +L+ Y+ F+ ++ +E + + + + I R+ + Sbjct: 13 LEFHTSLSKDSLKYYKAGLNAFM---KYFPDENKSWENL------TVEDAIFFYRSYNVS 63 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-LNEKQALTLVDNVLL 143 + R L+ + F + K+K E+ I + RA L EKQ L+ NV Sbjct: 64 KNTKIRRLNDVNRFYNWAMKQKYLVENPIETFVTTLRPEKKERAYLTEKQFKILLSNVKD 123 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPL 202 + + L+LL G+RISE ++L + + + + I GKG K R V Sbjct: 124 FNYY---------TYTLFLL-KTGVRISEFVNLKVKQVDFENGIIFIHAGKGAKDRYV-F 172 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL--GLPLST 260 + + LEYY NL+ F G+ L +Y L + + Sbjct: 173 MDVELASRLEYYLEMRILTNLSCN-NFFVNKHGRKLAEDQITKYTDYLNEVMDGSISFRI 231 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 T H LRH+FAT +L G DL+S+ ILGH + TT Y + N + Sbjct: 232 TPHILRHTFATAMLEKGMDLKSLSLILGHEDIKTTSQYLHKNKE 275 >gi|254513557|ref|ZP_05125621.1| tyrosine recombinase [Rhodobacteraceae bacterium KLH11] gi|221532066|gb|EEE35063.1| tyrosine recombinase [Rhodobacteraceae bacterium KLH11] Length = 167 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 67/132 (50%), Gaps = 7/132 (5%) Query: 191 QGKGDKIRIVPLLPSVRKAILEY-YDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 +GKG R+VP+ +Y +++ P FDL + F G+ P + +R Sbjct: 17 EGKGKVDRMVPIGERALLWCEKYLHEVRPQFDLTGH-DPAFFLTSFGEAFTPNRMTQLVR 75 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 + S + H RHS AT +L NG D+R IQ +LGH +L TTQIYT V+ + Sbjct: 76 GHINAAEIGKSGSCHLFRHSCATLMLENGADIRYIQQLLGHAKLDTTQIYTQVSIRQ--- 132 Query: 309 WMMEIYDQTHPS 320 + +I+ THP+ Sbjct: 133 -LKQIHTLTHPA 143 >gi|239828723|ref|YP_002951346.1| integrase family protein [Geobacillus sp. WCH70] gi|239809016|gb|ACS26080.1| integrase family protein [Geobacillus sp. WCH70] Length = 304 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 74/302 (24%), Positives = 138/302 (45%), Gaps = 33/302 (10%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 +L E + +LQ E+G S T+ SY D QFL L + +T IR+ I+ Sbjct: 1 MLHEYETYLQ----EKGFSPNTVISYLNDVNQFLKDLHLRPGDYVTSADIRKW----IQQ 52 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS---NSLPRALN 130 ++ + + ++ R L+ ++SF + ++ + ++++LK + N L Sbjct: 53 MLNPVEGKPLAISTINRRLNSLRSFYAWAVAHHKLEQNPMRDIQDLKSADEENEKIMWLT 112 Query: 131 EKQALTLVDNVLLHTSHETKWIDA-----RNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 E++ L+ + +++ +D R+ A++YLL GLR+ E +L ++ + Sbjct: 113 EEEFEDLLQR-MRKKPVQSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEM 171 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-------LFRGIRGKPL 238 +RI GKG K+R VP + ++ A LE D F + + P +F R Sbjct: 172 RRIRIVGKGMKVRTVP-ISNILLAELE--DWLAFRAQMAKKKPHVATSPYVFYSQR---- 224 Query: 239 NPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRLSTTQ 296 +P R I+++ LP T H RH+F +L + D+ ++ + GH ++TT Sbjct: 225 SPKFSVRGIQRMIESYSLPNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTS 284 Query: 297 IY 298 Y Sbjct: 285 RY 286 >gi|89147634|gb|ABD62676.1| integrase [uncultured bacterium] Length = 163 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/59 (47%), Positives = 40/59 (67%) Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 QR ++ R G+ + H+LRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 104 LQRALKDALRLAGIAKPASCHSLRHSFATQLLESGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|254498068|ref|ZP_05110827.1| conserved hypothetical protein [Legionella drancourtii LLAP12] gi|254352704|gb|EET11480.1| conserved hypothetical protein [Legionella drancourtii LLAP12] Length = 194 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 69/152 (45%), Gaps = 10/152 (6%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-------RIQGKGDKIRIVPLLPSVR 207 RN A++Y +G GLR E SLT +++ D Q L R G K L + + Sbjct: 30 RNIALVYCSFGLGLRAKEIASLTIKDVADKQYRLLDEICLKRSMHWGKKQHYAYL--TNK 87 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 K D + + PLF+ R K P Q++ R L G+ + ++H+ R Sbjct: 88 KVYAALTDHLKTIVGSELNKPLFQTQRKKEFTPCTLQKWFRSLYDKAGI-IGASSHSGRR 146 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 +F T LL G ++++ S+ GH TT IY Sbjct: 147 TFITRLLEQGVSIKAVSSLAGHANTITTAIYA 178 >gi|75761085|ref|ZP_00741082.1| Integrase/recombinase (XerC/CodV family) [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228902689|ref|ZP_04066836.1| Integrase/recombinase (XerC/CodV family) [Bacillus thuringiensis IBL 4222] gi|74491427|gb|EAO54646.1| Integrase/recombinase (XerC/CodV family) [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228856876|gb|EEN01389.1| Integrase/recombinase (XerC/CodV family) [Bacillus thuringiensis IBL 4222] Length = 323 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 75/309 (24%), Positives = 141/309 (45%), Gaps = 51/309 (16%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS-- 76 +N+L + + + LS+ T++SY+ Q L Y E ++ I + ++ IR +I Sbjct: 9 ENFLLHCD-AKHLSRKTIRSYD----QTLKLFTSYLERELKITDVDKVKPLHIRTYIKYL 63 Query: 77 --------------------KRRT---QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI 113 RRT + I + ++ L IK F +L+ + ++ I Sbjct: 64 RERGKYTFTSNTASEQINYPTRRTDYGKTISETTIANYLRNIKVFFNFLEAEEDIAKNPI 123 Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRIS 171 N+ ++K P+ +++ L VD + +L++ + + R+ ++ L+ G+R Sbjct: 124 SNIESIK-----PQ--RKQKILLSVDEIKKVLYSIDISTFHGFRSYVMIKLILDTGIRAG 176 Query: 172 EALSLTPQNI-MDDQSTLRIQGKGDKIRIV---PLLPSVRKAILEYYDLCPFDLNLNIQL 227 E S+ +++ + ++S L K K R V ++ + K L+Y D + Sbjct: 177 ECCSMQAEDLDIKNKSILITNPKNKKQRYVYFSNIMANDLKRWLKYRD------RFSDAE 230 Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 LF IRG LN F+ IR + + +G+ T H LR++FA + + NGGD S+ +L Sbjct: 231 YLFPTIRGTMLNVNNFEASIRSIGKKVGVHF--TPHQLRNNFAKYYILNGGDWFSLSRVL 288 Query: 288 GHFRLSTTQ 296 GH + TQ Sbjct: 289 GHSSVEVTQ 297 >gi|89147614|gb|ABD62666.1| integrase [uncultured bacterium] Length = 163 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/58 (46%), Positives = 40/58 (68%) Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 QR ++ R G+ + + H+ RHSFATHLL +G D+R++Q +LGH + TT IYT+V Sbjct: 105 QRAVKDALRKAGVQKNGSCHSFRHSFATHLLEDGYDIRTVQELLGHKDVRTTMIYTHV 162 >gi|89147347|gb|ABD62534.1| integrase [uncultured bacterium] Length = 163 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 40/60 (66%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 103 TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 162 >gi|154000908|gb|ABS57022.1| integrase [uncultured bacterium] gi|154000918|gb|ABS57027.1| integrase [uncultured bacterium] gi|188526759|gb|ACD62261.1| IntI1 integrase [uncultured bacterium] gi|188526784|gb|ACD62273.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 40/60 (66%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 99 TFQRAFKRAVEEAGVAKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|223369860|gb|ACM88798.1| integrase [uncultured bacterium] Length = 163 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|188526792|gb|ACD62277.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/59 (50%), Positives = 40/59 (67%) Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 100 FQRAFKRAVEEAGVAKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|188526773|gb|ACD62268.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 40/60 (66%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 99 TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|154000967|gb|ABS57051.1| integrase [uncultured bacterium] Length = 158 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 40/60 (66%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 99 TFQRVFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|308234991|ref|ZP_07665728.1| phage family integrase/recombinase protein [Gardnerella vaginalis ATCC 14018] gi|311113898|ref|YP_003985119.1| phage integrase [Gardnerella vaginalis ATCC 14019] gi|310945392|gb|ADP38096.1| phage integrase [Gardnerella vaginalis ATCC 14019] Length = 277 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 58/215 (26%), Positives = 93/215 (43%), Gaps = 34/215 (15%) Query: 93 SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE---KQALTLVDNVLLHTSHET 149 S I+SF Y+ + +I + + + ++K ++P + + AL V Sbjct: 79 STIRSFYSYMIEEEIIDVNPTVKLPKIRKEYAIPHPCPDYIIRGALARVRG--------- 129 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVR 207 + A+L L CGLR SE ++ +IM + L + GKG K R VP+ P + Sbjct: 130 ---NKEYEAMLRLGAECGLRRSEIAQVSSSDIMMLNTHPQLLVHGKGRKERTVPIAPDLA 186 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 + I N +F G + +I QL LG ST H+LRH Sbjct: 187 QIIA------------NKHGYMFPGRWTGHVEASYIAHHISQL---LGNGYST--HSLRH 229 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 +AT+ + DL + +LGH + TTQIY ++ Sbjct: 230 RYATNAYESTHDLLLVSKLLGHASVETTQIYISLT 264 >gi|215407992|emb|CAS02323.1| integron integrase [uncultured bacterium] gi|215407996|emb|CAS02325.1| integron integrase [uncultured bacterium] gi|215407998|emb|CAS02326.1| integron integrase [uncultured bacterium] gi|215408002|emb|CAS02328.1| integron integrase [uncultured bacterium] gi|215408010|emb|CAS02332.1| integron integrase [uncultured bacterium] gi|215408020|emb|CAS02337.1| integron integrase [uncultured bacterium] gi|215408022|emb|CAS02338.1| integron integrase [uncultured bacterium] gi|215408026|emb|CAS02340.1| integron integrase [uncultured bacterium] Length = 158 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 40/60 (66%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 99 TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|188526775|gb|ACD62269.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 40/60 (66%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 99 TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|229106636|ref|ZP_04236877.1| Integrase-recombinase [Bacillus cereus Rock3-28] gi|228676818|gb|EEL31423.1| Integrase-recombinase [Bacillus cereus Rock3-28] Length = 390 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 10/153 (6%) Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 N IL L G RI E + +++ D + L++ GKGDK+R + + + + I E Sbjct: 218 NYTILLALASTGARIQELCTARVKDLHYDGKYWLKVTGKGDKVRELFISEHLFQCISEMR 277 Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266 F L+ + PLF RG NP ++ + + L TAHT R Sbjct: 278 RRRGFQTILDRGDECPLFVNQRGNFYNPKTLSNQVKDMIKKTNLDFLKYRENPVTAHTFR 337 Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298 H+FA + G DL + LGH + TT+IY Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370 >gi|237717514|ref|ZP_04547995.1| phage integrase [Bacteroides sp. 2_2_4] gi|229453183|gb|EEO58974.1| phage integrase [Bacteroides sp. 2_2_4] Length = 407 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 59/245 (24%), Positives = 116/245 (47%), Gaps = 16/245 (6%) Query: 66 LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 L+ +I +I ++ +LK L I+ +L+Y ++ + +L K+ Sbjct: 149 LTLEDIDKYIEYYTINQVQRNTLKEYLCCIRVYLRYAVEKGWC-------IADLDKALIT 201 Query: 126 PRALNEKQALTL-----VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 P+ +E+ + V +L +T +R+ AI LL GLR SE +L + Sbjct: 202 PKVYSEENLPSFLPWDKVQKLLQTVKEQTGKSASRDYAIFMLLAMYGLRCSEVANLKLSD 261 Query: 181 IMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPL 238 I + + I+ K + +I+PLL +V +AI++Y + P +++ + L +P+ Sbjct: 262 IDWRKEQIYIKRAKNCRPQILPLLHNVGEAIIDYLKNGRPNEVDSD-SLFFCAPAPIRPI 320 Query: 239 NPGVFQRYIRQLRRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + + + +Y G+ + H+LRHS AT L++ G L+ + +LGH + T++ Sbjct: 321 SCNAIASVVYRYLKYSGINIKHKGPHSLRHSHATFLINEGQTLKDVGDLLGHKSMEATRV 380 Query: 298 YTNVN 302 Y V+ Sbjct: 381 YAKVD 385 >gi|188526769|gb|ACD62266.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 40/60 (66%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 99 TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|238923684|ref|YP_002937200.1| site-specific tyrosine recombinase [Eubacterium rectale ATCC 33656] gi|238875359|gb|ACR75066.1| site-specific tyrosine recombinase [Eubacterium rectale ATCC 33656] Length = 331 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/154 (33%), Positives = 71/154 (46%), Gaps = 9/154 (5%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 ++ A+L L Y G R++E L +I + + GKGDK RI L AI Y Sbjct: 174 KDKALLELFYSTGCRVTEMERLDISDIDFQTKEVLLFGKGDKHRISYLNAKAEIAIRNYL 233 Query: 215 DLCPFDLNLNIQLPLFRGIR---GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 D N N + LF R G+ P + +R IR L G+ H +RH+ AT Sbjct: 234 D----SRNDN-EEALFVSDRKPYGRLKKPAIEKR-IRVLGEKSGIGRRLYPHLIRHTTAT 287 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 L G + +Q ILGH ++TT IY V+ N Sbjct: 288 DGLDRGMPVEEVQQILGHVNIATTMIYAEVSRAN 321 >gi|215408008|emb|CAS02331.1| integron integrase [uncultured bacterium] Length = 159 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 40/60 (66%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 99 TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|329315330|gb|AEB89743.1| Transposase A from transposon Tn554 [Staphylococcus aureus subsp. aureus T0131] Length = 302 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 99/217 (45%), Gaps = 37/217 (17%) Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 K FL ++ K + + N+L +R KK R L K+ ++D HT Sbjct: 80 FKGFLHHVNKGRY--QKNVLKLRVKKKQ---IRTLRSKEVKQIIDAC--HTK-------- 124 Query: 155 RNSAILYLLYGCGLRISEALSL--------------TPQNIMDDQSTLRIQGKGDKIRIV 200 R+ IL L+Y GLRI E LSL TP+++ +++ ++++ K I + Sbjct: 125 RDKLILMLMYEGGLRIGEVLSLRLEDIVTWDNQIHLTPRDVNVNEAYIKLR-KERTIHVS 183 Query: 201 PLLPSVRKA--ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 L S+ I EY + D + + L G GKPL +R++ + G+ Sbjct: 184 KELMSLYTDYLIYEYSEELEHDY---VFISLKEGYFGKPLKYQSVLDLVRRIVKRTGIEF 240 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 T+H LRH+ AT L+ G D+ +Q LGH + TT Sbjct: 241 --TSHMLRHTHATQLIREGWDVAFVQKRLGHAHVQTT 275 >gi|154000898|gb|ABS57017.1| integrase [uncultured bacterium] gi|154000900|gb|ABS57018.1| integrase [uncultured bacterium] gi|154000902|gb|ABS57019.1| integrase [uncultured bacterium] gi|154000906|gb|ABS57021.1| integrase [uncultured bacterium] gi|154000912|gb|ABS57024.1| integrase [uncultured bacterium] gi|154000920|gb|ABS57028.1| integrase [uncultured bacterium] gi|154000924|gb|ABS57030.1| integrase [uncultured bacterium] gi|154000928|gb|ABS57032.1| integrase [uncultured bacterium] gi|154000934|gb|ABS57035.1| integrase [uncultured bacterium] gi|154000938|gb|ABS57037.1| integrase [uncultured bacterium] gi|154000942|gb|ABS57039.1| integrase [uncultured bacterium] gi|154000946|gb|ABS57041.1| integrase [uncultured bacterium] gi|154000948|gb|ABS57042.1| integrase [uncultured bacterium] gi|154000950|gb|ABS57043.1| integrase [uncultured bacterium] gi|154000954|gb|ABS57045.1| integrase [uncultured bacterium] gi|154000956|gb|ABS57046.1| integrase [uncultured bacterium] gi|154000960|gb|ABS57048.1| integrase [uncultured bacterium] gi|154000963|gb|ABS57049.1| integrase [uncultured bacterium] gi|154000965|gb|ABS57050.1| integrase [uncultured bacterium] gi|154000969|gb|ABS57052.1| integrase [uncultured bacterium] gi|188526755|gb|ACD62259.1| IntI1 integrase [uncultured bacterium] gi|188526767|gb|ACD62265.1| IntI1 integrase [uncultured bacterium] gi|188526786|gb|ACD62274.1| IntI1 integrase [uncultured bacterium] gi|188526788|gb|ACD62275.1| IntI1 integrase [uncultured bacterium] gi|188526794|gb|ACD62278.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 40/60 (66%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 99 TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|188526765|gb|ACD62264.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 40/60 (66%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 99 TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|154000944|gb|ABS57040.1| integrase [uncultured bacterium] Length = 158 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 40/60 (66%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 99 TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|154000952|gb|ABS57044.1| integrase [uncultured bacterium] Length = 158 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 40/60 (66%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 99 TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|154000958|gb|ABS57047.1| integrase [uncultured bacterium] Length = 158 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 40/60 (66%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 99 TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|188526771|gb|ACD62267.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 40/60 (66%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 99 TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|89147418|gb|ABD62569.1| integrase [uncultured bacterium] Length = 163 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 44/74 (59%) Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 P R +R L+ QR ++ + L + H LRHSFATHLL G D+R++Q +L Sbjct: 89 PRSRKVRRHHLHENALQRAVKVAAVKVALTKQMSCHVLRHSFATHLLEAGYDIRTVQELL 148 Query: 288 GHFRLSTTQIYTNV 301 GH +STT IYT+V Sbjct: 149 GHADVSTTMIYTHV 162 >gi|323344111|ref|ZP_08084337.1| phage integrase family site-specific recombinase [Prevotella oralis ATCC 33269] gi|323094840|gb|EFZ37415.1| phage integrase family site-specific recombinase [Prevotella oralis ATCC 33269] Length = 327 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 58/232 (25%), Positives = 107/232 (46%), Gaps = 30/232 (12%) Query: 111 SNILNMRNLKKSNSLPRALNEKQALTL---VDNVLLHTSHETKWIDARNSAILYLLYGCG 167 S I ++ K++ +P +E++ +L +DN LL H T + I LY CG Sbjct: 95 SYIPSLPKRPKTSYIPHVYSEQEVKSLFNAIDNTLLQCRHNTTCLIGL-PVIFRFLYYCG 153 Query: 168 LRISEALSL--TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI---LEYYDLCPFDLN 222 R+ E L++ + NI + TL + K K R++PL +++ + + Y D P D + Sbjct: 154 ARVGEVLAIRNSDVNISEGFITL-TKTKNRKHRLIPLNEQMKEVLCTYMHYRDKMPLDSS 212 Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-----HTLRHSFAT----HL 273 LF RG+ ++ + R++ + G+ + H LRH+FA H+ Sbjct: 213 AEPDSYLFVNHRGEKISHAAVYKRFREILKVCGITHAGHGEGPRVHDLRHTFAVHSVYHM 272 Query: 274 LSNGGDLRS----IQSILGHFRLSTTQIYTNVN-------SKNGGDWMMEIY 314 + +G D+ + I ++LGH + +T+ Y + + GGD + I+ Sbjct: 273 VKSGMDIYTAWPIISTLLGHHDIYSTEHYIRLALEIYPALYQAGGDKLATIF 324 >gi|257413996|ref|ZP_04744923.2| site-specific recombinase, phage integrase family [Roseburia intestinalis L1-82] gi|257201563|gb|EEU99847.1| site-specific recombinase, phage integrase family [Roseburia intestinalis L1-82] Length = 368 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/238 (23%), Positives = 110/238 (46%), Gaps = 22/238 (9%) Query: 74 FISKRRTQKIGDRS-LKRSLSGIKSFLKYLKKRKITTESNIL--NMRNLKKSNSLPRALN 130 + K T+ D LKR LS ++SF Y K + + + +M + + N + L+ Sbjct: 115 YYEKDGTEHTNDEGGLKRKLSALRSFYHYYYKNGLIEDDPTVKVDMPKIHEKNII--RLD 172 Query: 131 EKQALTLVDNVLLHTS--------HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 + L+D V + HE I R+ A++ LL G G+R+SE + L +++ Sbjct: 173 VDEVAKLLDEVESGENLTARQQQYHEKTKI--RDLAMMTLLLGTGIRVSECVGLDMEDVD 230 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPL 238 + ++I KG +V VR+A+++Y + D ++N LF ++ K + Sbjct: 231 FKNNGIKIHRKGGAEVVVYFGEEVRRALMDYMVERQKITAADGSIN---ALFLSLQNKRI 287 Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + + +++ + + T H LR ++ T L GD+ + +LGH ++TT+ Sbjct: 288 SVRSVENMVKKYSKLVTTLKHITPHKLRSTYGTSLYRETGDIYLVADVLGHKDVNTTR 345 >gi|218514489|ref|ZP_03511329.1| site-specific tyrosine recombinase XerD [Rhizobium etli 8C-3] Length = 77 Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 5/72 (6%) Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 P + H +RH+FA+HLL+NG DLR +Q +LGH +STTQIYT+V + ++ Q Sbjct: 10 PSLISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEER-----LQQLVQ 64 Query: 317 THPSITQKDKKN 328 TH + ++ KK+ Sbjct: 65 THHPLAKQAKKH 76 >gi|312200217|ref|YP_004020278.1| integrase family protein [Frankia sp. EuI1c] gi|311231553|gb|ADP84408.1| integrase family protein [Frankia sp. EuI1c] Length = 310 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 76/300 (25%), Positives = 111/300 (37%), Gaps = 29/300 (9%) Query: 6 LPEIVSFELLKERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 LP + L +R W L L ++ G S T ++Y ++ I Sbjct: 12 LPAAGAVALAGDRDPWPALVALWLDSGFSPRTREAYGRAVAEW--------TRACEAWGI 63 Query: 64 RQLSYTEIRAFISKRRTQKIGDRS--LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121 L A R + G S + R L+ + S Y + S + ++ Sbjct: 64 HPLDARRPHADRWARDLEAAGQASTTIGRKLASVASVYAYALDEHLIDASPLAKVKR--- 120 Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 P+ + QA + + R SA++ LL GLR+SEA+ + Sbjct: 121 ----PKTTDRHQAPGMTLDQARAFLAAADADGPRTSALMRLLLANGLRVSEAIEADVDQL 176 Query: 182 MDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239 ++ LRI GKG K V L P +AI Y L PLF G L+ Sbjct: 177 GHERGHRVLRIVGKGSKAATVVLAPPTARAIDAY-------LAGRTAGPLFVTATGNRLD 229 Query: 240 PGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 R IR+L + GL L + H+LR + T LL G LR Q H TT+ Y Sbjct: 230 RPAVWRTIRRLAKRAGLGDLQLSPHSLRATSVTLLLDAGASLRDAQDHARHADPRTTRAY 289 >gi|89147396|gb|ABD62558.1| integrase [uncultured bacterium] Length = 163 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/60 (46%), Positives = 38/60 (63%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 Q+ ++ R G+ + HT RHSFATHLL G D+R+IQ +LGH + TT IYT+V Sbjct: 103 ALQKAVKSAIRAAGISKPGSCHTFRHSFATHLLEAGYDIRTIQELLGHADVQTTMIYTHV 162 >gi|229065704|ref|ZP_04200929.1| Phage integrase [Bacillus cereus AH603] gi|228715567|gb|EEL67367.1| Phage integrase [Bacillus cereus AH603] Length = 351 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 122/292 (41%), Gaps = 51/292 (17%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 S+ T + Y D FL ++ K TI TI LS+ E+ + + ++K +L+R Sbjct: 66 SERTKKIYLHDLSHFLRYI------KETIGTIHDLSHNEMEIYFYQL-SKKYAATTLRRK 118 Query: 92 LSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVD-----NVLLH 144 + ++ FLKY+ ++ S+ L ++KK + R L ++ ++D N ++ Sbjct: 119 KTVVQQFLKYVYDNTGLSDDYSSRLKKVSVKKEELVNRDLFPEEVNEILDALKKTNFFMY 178 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIV 200 T + +LL GLRI E + +++ S LR+ GKG+K R V Sbjct: 179 T-------------LFFLLTTTGLRIEEVANAKWADLVFHSSLNAYLLRVVGKGNKAREV 225 Query: 201 PLLPSVRKAILEYYDLCPF--------DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 + V D+C +L+ + G +Y+ + Sbjct: 226 RIFEDVLD------DICRLRQLRKQTSELDASSTSAFLPKADGSYYRADYLSKYVAEKIE 279 Query: 253 YLGLPL------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 LP T HT RH FA HL+ G +L+ I+ LGH + TT+ Y Sbjct: 280 ETNLPFLRYRKDRITPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERY 331 >gi|188526782|gb|ACD62272.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 40/60 (66%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 99 TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|289650500|ref|ZP_06481843.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. aesculi str. 2250] Length = 279 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 58/222 (26%), Positives = 98/222 (44%), Gaps = 23/222 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W NL+ R T ++Y+ D F F+ + + RQ++ + + A+ + Sbjct: 33 WFANLDNPR-----TRRAYQNDLTDFSAFIGLASADDF-----RQVTRSHVLAWRANLEQ 82 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVD 139 + + +++R L+ + S +L ESN + N P+ NE + L D Sbjct: 83 RGLAGATIRRKLAALASLFDHL------LESNAIAGGNPVHGVKRPKIESNEGKTPALGD 136 Query: 140 N---VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKG 194 + LL E+ R+ A+L +L GLR EA L +I + + L+I GKG Sbjct: 137 HQAKALLEAPDESTLKGLRDRAMLAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKG 196 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 K+R +PL P I Y + L + ++PLF +RGK Sbjct: 197 GKVRYLPLHPVAAGRIHWYLERSGHHLG-DKKVPLFISLRGK 237 >gi|188526779|gb|ACD62271.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 40/60 (66%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 99 TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQGLLGHSDVSTTMIYTHV 158 >gi|89147646|gb|ABD62682.1| integrase [uncultured bacterium] Length = 163 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 39/64 (60%) Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L+ Q+ +R R G+ T HT RHSFAT LL G D+R++Q +LGH + TT I Sbjct: 99 LDESSLQKAVRAAARLAGIAKHVTCHTFRHSFATQLLEAGYDIRTVQELLGHQDVKTTMI 158 Query: 298 YTNV 301 YT+V Sbjct: 159 YTHV 162 >gi|303239646|ref|ZP_07326171.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302592817|gb|EFL62540.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 333 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 76/324 (23%), Positives = 141/324 (43%), Gaps = 42/324 (12%) Query: 11 SFELLKERQNWLQNLEIER-GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69 SFEL +R ER LS T++ YE + ++F+ +L+ E + I + Sbjct: 13 SFELFLDR--------CERENLSPSTIKFYEDNMKRFIKYLSI--EHNLQNPLIPDFNSV 62 Query: 70 EIRAFISK--------------RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115 I +++K R +K+G +S+K +++ + +E Sbjct: 63 HINKYLAKIKKSKKWNGHTHIKAREEKVGSQSIKTYARALRAIGNWFFTEDYISE----- 117 Query: 116 MRNLKKSNSLPRALNEKQALTLVDNV-LLHTSHETKW-IDARNSAILYLLYGCGLRISEA 173 N+ ++ LP+A + + D + + T +TK + RNS I L + G+R Sbjct: 118 --NIIETVDLPKAAKSDKEVLCDDEIKAIITKFDTKTKLGLRNSIIFLLAFDAGIRQGGI 175 Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233 +L ++ TLR++ KG I ++PL +V I EY + + N+ PL I Sbjct: 176 ANLKIGDVDLKAKTLRVRLKGGNITVLPLGNTVLWQIKEY--IVKYRGIDNLNEPLLTNI 233 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 G L ++ +L++ G+ + H RH+FAT+ +S G + +Q L H + Sbjct: 234 NGSKLTENAIKKMFSKLKKKSGV-IRVNCHLGRHTFATNYISEGHTQQELQLALAHESDT 292 Query: 294 TTQIYTNVNSK-----NGGDWMME 312 ++ Y +++ K G D M+ Sbjct: 293 MSKEYVHLDEKINYVRRGADSHMD 316 >gi|257463481|ref|ZP_05627875.1| integrase/recombinase [Fusobacterium sp. D12] gi|317061040|ref|ZP_07925525.1| integrase/recombinase [Fusobacterium sp. D12] gi|313686716|gb|EFS23551.1| integrase/recombinase [Fusobacterium sp. D12] Length = 333 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 76/297 (25%), Positives = 137/297 (46%), Gaps = 50/297 (16%) Query: 35 TLQSYECDTRQFLIFL----AFYTEEKITIQTIRQLSYTEIRAFISKR-RTQKIGDRSLK 89 TLQ Y + FL F+ A + +++I + ++ + ++ +IS + +K+ S+ Sbjct: 36 TLQDYLFYLKDFLSFVYEGEASFQQDEI-LPLMKGVEREDVEQYISHLLQERKMKKSSVN 94 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 + +S +KS K L+ ++ E+ ++ K + +L DN+L +S++ Sbjct: 95 KVISAMKSLYKELEAYQV--ENPFRYVKLFKTARNL-------------DNILKISSNDI 139 Query: 150 KWI----------DARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQG-KGDK 196 K I D RN ILY LY G+R E L + +++++ + + L+++ K K Sbjct: 140 KHIIERFQIKSEKDYRNLMILYTLYYTGVRSDELLHMEFRHLLNREGSYFLKLEKTKSGK 199 Query: 197 IRIVPLLPSVRKAILEY-------YDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIR 248 + P+ P++ + + EY + L DL N I F N + R + Sbjct: 200 EQYKPIHPALMEELQEYKKEMKALHRLEEEDLQNHFIFCSHFEK------NKALSYRALY 253 Query: 249 QLRRYLGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 L + LGL + + H +RH+ AT L NG DL I+ LGH T++Y N S Sbjct: 254 DLIKSLGLSIEKDMSPHNIRHAIATELSLNGADLVEIRDFLGHADTKVTEVYINAKS 310 >gi|89147422|gb|ABD62571.1| integrase [uncultured bacterium] Length = 163 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/59 (50%), Positives = 39/59 (66%) Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 QR + + R GL + HTLRHSFATHLL G D+R++Q +LGH + TT IYT+V Sbjct: 104 LQRAMSRAGRAAGLTKRISCHTLRHSFATHLLQQGYDIRTVQELLGHKDVKTTMIYTHV 162 >gi|89147398|gb|ABD62559.1| integrase [uncultured bacterium] Length = 163 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 45/74 (60%) Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 P R +R L+ V Q+ + + G+ + HT RHSFATHLL G D+R++Q +L Sbjct: 89 PRTRKVRRHHLSENVIQKAVSAAIQRSGIAKPGSCHTFRHSFATHLLEAGYDIRTVQELL 148 Query: 288 GHFRLSTTQIYTNV 301 GH ++TT IYT+V Sbjct: 149 GHKDVTTTMIYTHV 162 >gi|237711592|ref|ZP_04542073.1| site-specific recombinase [Bacteroides sp. 9_1_42FAA] gi|229454287|gb|EEO60008.1| site-specific recombinase [Bacteroides sp. 9_1_42FAA] Length = 381 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 70/149 (46%), Gaps = 10/149 (6%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 A L+ Y CGLR+S+ +L ++I D R+ K LP R A+ Sbjct: 230 AYLFSCY-CGLRLSDIYALRWKDIFLDGEQYRVSTVMQKTTTPIYLPLSRHAV----RWL 284 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 P +L +F G+ P P + + + + G+ T HT RHSFAT +L+ G Sbjct: 285 PERDGEGDELKIFAGL---PAEPNI-NKVLAKWAVAAGITKKITYHTSRHSFATMMLTLG 340 Query: 278 GDLRSIQSILGHFRLSTTQIYTN-VNSKN 305 DL + +LGH + TTQIY V+SK Sbjct: 341 ADLYTTSKLLGHSNVKTTQIYAKIVDSKK 369 >gi|188526763|gb|ACD62263.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 40/60 (66%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 99 TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|215408032|emb|CAS02343.1| integron integrase [uncultured bacterium] Length = 138 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 40/60 (66%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 79 TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 138 >gi|291459078|ref|ZP_06598468.1| site-specific recombinase, phage integrase family [Oribacterium sp. oral taxon 078 str. F0262] gi|291418332|gb|EFE92051.1| site-specific recombinase, phage integrase family [Oribacterium sp. oral taxon 078 str. F0262] Length = 364 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/230 (24%), Positives = 107/230 (46%), Gaps = 29/230 (12%) Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 ++S+KR +S +KSF KYL + ++ +E +++L + L+ + L+E + L+D Sbjct: 123 EQSIKRKISSLKSFYKYLYRDQLISEDTASLLILPKLRDREII--RLDENEVADLLDTAE 180 Query: 143 LHTS--------HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 HE + R++AIL L+ G G+R+SE + L Q++ + +RI KG Sbjct: 181 SGEKLTERQQRFHEKTAL--RDTAILSLMLGTGIRVSECVGLNIQDLDLNSDGIRIHRKG 238 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP--------LFRGIRGKPLNPGVFQRY 246 K V V + + Y L ++P LF ++ K + + Sbjct: 239 GKEVTVYFSDEVERILSSY-------LKARKKMPALSSSEDALFLSLQKKRIGVRAVENM 291 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 +++ + T H LR ++ T+L GD+ + +LGH ++TT+ Sbjct: 292 VKKYASAVTPLKHITPHKLRSTYGTNLYRETGDIYLVADVLGHEDVNTTK 341 >gi|154000940|gb|ABS57038.1| integrase [uncultured bacterium] Length = 158 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 40/60 (66%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 99 TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|188526761|gb|ACD62262.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 40/60 (66%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 99 TFQRAFKRAVEQAGITKPVTPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|291538944|emb|CBL12055.1| Site-specific recombinase XerD [Roseburia intestinalis XB6B4] Length = 368 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/238 (23%), Positives = 109/238 (45%), Gaps = 22/238 (9%) Query: 74 FISKRRTQKIGDRS-LKRSLSGIKSFLKYLKKRKITTESNIL--NMRNLKKSNSLPRALN 130 + K T+ D LKR LS ++SF Y K + + + +M + + N + L+ Sbjct: 115 YYEKDGTEHTNDEGGLKRKLSALRSFYHYYYKNGLIEDDPTVKVDMPKIHEKNII--RLD 172 Query: 131 EKQALTLVDNV--------LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 + L+D V HE I R+ A++ LL G G+R+SE + L +++ Sbjct: 173 VDEVAKLLDEVESGENLTARQQQYHEKTKI--RDLAMMTLLLGTGIRVSECVGLDMEDVD 230 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPL 238 + ++I KG +V VR+A+++Y + D ++N LF ++ K + Sbjct: 231 FKNNGIKIHRKGGAEVVVYFGEEVRRALMDYMVERQKITAADGSIN---ALFLSLQNKRI 287 Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + + +++ + + T H LR ++ T L GD+ + +LGH ++TT+ Sbjct: 288 SVRSVENMVKKYSKLVTTLKHITPHKLRSTYGTSLYRETGDIYLVADVLGHKDVNTTR 345 >gi|188526753|gb|ACD62258.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 40/60 (66%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 99 TFQRAFKRTVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|229599881|ref|YP_002860872.1| integrase/recombinase XerD [Clostridium botulinum Ba4 str. 657] gi|229260405|gb|ACQ51441.1| integrase/recombinase XerD [Clostridium botulinum Ba4 str. 657] Length = 212 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 94/208 (45%), Gaps = 20/208 (9%) Query: 105 RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW----IDARNSAIL 160 RK+T+ + + N+ R +KQ T +D+VL E + R+ AI+ Sbjct: 8 RKLTSINQLFKSININYGVKCKRMKEQKQ--TFLDDVLTRDEIEKMLNKCGTNIRDKAII 65 Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPF 219 LY GLR+SE L L ++I + ++ I+GKG K R + + +++ L+Y + P Sbjct: 66 MTLYKTGLRVSELLQLRIRDIR--KKSIEIEGKGGKYRYIIVPKELKEIWLQYLKVRKPV 123 Query: 220 DLNLNIQLPLFRGIRGKPLNPGV---FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 + + LF G G+ + ++Y Q R G H LRHSF L Sbjct: 124 ETD-----KLFVGTNGEMHRHNINRIIKKYAVQARITKG---KAHPHALRHSFCKALAIQ 175 Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + I + GH L+TT+IYT K Sbjct: 176 NVGIEVIADLAGHEDLNTTRIYTRQTQK 203 >gi|154000926|gb|ABS57031.1| integrase [uncultured bacterium] gi|154000971|gb|ABS57053.1| integrase [uncultured bacterium] Length = 158 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 40/60 (66%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 99 TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|168185276|ref|ZP_02619940.1| tyrosine recombinase XerD [Clostridium botulinum Bf] gi|182671679|gb|EDT83640.1| tyrosine recombinase XerD [Clostridium botulinum Bf] Length = 212 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 94/208 (45%), Gaps = 20/208 (9%) Query: 105 RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW----IDARNSAIL 160 RK+T+ + + N+ R +KQ T +D+VL E + R+ AI+ Sbjct: 8 RKLTSINQLFKSININYGVKCKRMKEQKQ--TFLDDVLTRDEIEKMLKKCGTNIRDKAII 65 Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPF 219 LY GLR+SE L L ++I + ++ I+GKG K R + + +++ L+Y + P Sbjct: 66 MTLYKTGLRVSELLQLRIRDIR--KKSIEIEGKGGKYRYIIVPKELKEIWLQYLKVRKPV 123 Query: 220 DLNLNIQLPLFRGIRGKPLNPGV---FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 + + LF G G+ + ++Y Q R G H LRHSF L Sbjct: 124 ETD-----KLFVGTNGEMHRHNINRIIKKYAVQARITKG---KAHPHALRHSFCKALAIQ 175 Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + I + GH L+TT+IYT K Sbjct: 176 NVGIEVIADLAGHEDLNTTRIYTRQTQK 203 >gi|167946117|ref|ZP_02533191.1| site-specific tyrosine recombinase XerD [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 223 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 86/181 (47%), Gaps = 15/181 (8%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +ERGLS+ TL +Y+ D + ++L +++ + ++ +++ Q Sbjct: 4 LWMERGLSQNTLVAYQSDLSKLSLWLQRQRGKRLL-----EAGQKDLLGYLAVLAQQGRQ 58 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 RS R LS ++ F +Y + + + + + K+++ + RA + L+ Sbjct: 59 ARSSARLLSCMRQFYQYAVRESLLSADPSAQIESPKRASPVTRAPSLSARLS-------S 111 Query: 145 TSHETKWI---DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 W R+ +L LLY GLR+SE + L P+ I Q +R+ GKGDK R+VP Sbjct: 112 YWRPPTWAILQGVRDRTMLELLYATGLRVSELIDLRPEQISLSQGVVRVIGKGDKERLVP 171 Query: 202 L 202 + Sbjct: 172 M 172 >gi|294647358|ref|ZP_06724951.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294809021|ref|ZP_06767743.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|292637317|gb|EFF55742.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294443746|gb|EFG12491.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] Length = 330 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 67/283 (23%), Positives = 123/283 (43%), Gaps = 36/283 (12%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS----KRRTQKIGD 85 G S TL Y + L+ L+ I ++ T+IR ++S + ++ K+ Sbjct: 67 GCSDKTLTYYRNTIERLLVTLSL---------AICHITTTDIRTYLSDYQEEHQSSKVTI 117 Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 +++R S SF +L+ +S + + +K + + L+++Q L D+ Sbjct: 118 DNMRRIFS---SFFAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQLRDSC---- 170 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 + R+ AI+ +L G+R+ E + L ++I + + GKG+K RIV Sbjct: 171 ------TNKRDLAIIDILASTGIRVGELVKLNREDIDFHERQCVVFGKGNKERIVYFNAR 224 Query: 206 VRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 + + +Y + D L +++ P R L + IR+L + L +P Sbjct: 225 TKLHLQQYLNERTDDNPALFVSLHSPHTR------LTISGVEIRIRKLGQSLSMP-KVHP 277 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 H R + AT + G + +Q +LGH R+ TT Y VN N Sbjct: 278 HKFRRTLATMAIDKGMPIEQVQRLLGHVRIDTTLHYAIVNQNN 320 >gi|83722831|gb|ABC41687.1| integrase [uncultured bacterium] Length = 163 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/59 (52%), Positives = 39/59 (66%) Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 QR I++ L + HTLRHSFATHLL G DLR++Q +LGH +STT IYT+V Sbjct: 104 IQRAIKRAVLAAKLTKPASTHTLRHSFATHLLEAGYDLRTVQELLGHADVSTTMIYTHV 162 >gi|304312589|ref|YP_003812187.1| Integron integrase [gamma proteobacterium HdN1] gi|301798322|emb|CBL46544.1| Integron integrase [gamma proteobacterium HdN1] Length = 334 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 58/232 (25%), Positives = 98/232 (42%), Gaps = 52/232 (22%) Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173 L +K + +P + ++A+ ++ L +H+ ++ L+YG G+RI+E Sbjct: 107 LGFSRARKPSRIPTVFSHQEAMDIIGR--LSGTHQL---------VVQLIYGTGMRINEV 155 Query: 174 LSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPS--------------------VRKAILE 212 L L +++ Q + GKGDK R+ LLP + + + Sbjct: 156 LRLRIKDVDFSMQQIIVRAGKGDKDRVT-LLPDRLISPLKQQIDVALAVHRQDLSQGFGD 214 Query: 213 YYDLCPFDLNLNIQLPLFRGI------------------RGKPLNPGVFQRYIRQLRRYL 254 Y N + P ++ + R L+ GV Q+ + + Sbjct: 215 VYMPNALAKKYNAKAPEWQYVFAAAQMSVDPRSENQIRRRHHILDRGV-QKAVAHAMQQA 273 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 + HT RHSFAT LL G D+R+IQ +LGH + TT+IYT+V + G Sbjct: 274 KVYKKGNTHTFRHSFATRLLEVGYDIRTIQKLLGHADVKTTEIYTHVVKRGG 325 >gi|303247551|ref|ZP_07333822.1| integrase family protein [Desulfovibrio fructosovorans JJ] gi|302491031|gb|EFL50925.1| integrase family protein [Desulfovibrio fructosovorans JJ] Length = 413 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 102/224 (45%), Gaps = 22/224 (9%) Query: 86 RSLKRSLSGIKSFLKYLKKRKIT-TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 RS +L ++ + + +T S ++ K N R L ++A L+++V Sbjct: 168 RSAHYALCVVRQVFNFARDHDMTDCVSPTCKVKAPKTDNRRLRFLTHEEADKLLEHVA-K 226 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLL 203 SHE AI + CGLR E +LT ++ D+ TL ++ K + RI + Sbjct: 227 RSHEL-------HAISLVSLHCGLRAGEIFNLTWSDVDFDRETLTLRDTKNGRTRIAYMT 279 Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRYLGLPLS-- 259 VR + P D P+F G G + F+R ++ L G+ S Sbjct: 280 GQVRGMLAARVKGGPGD-------PVFPGRGGVRRSYVSNAFERAVKDLGFNEGITDSRQ 332 Query: 260 -TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 H+LRH+FA+ L+ G DL S++ ++GH LS T+ Y++++ Sbjct: 333 KVVFHSLRHTFASWLVEQGTDLYSVKELMGHRTLSMTERYSHLS 376 >gi|89147369|gb|ABD62545.1| integrase [uncultured bacterium] Length = 163 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 41/64 (64%) Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L+ Q+ ++ R G+ + HT RHSFATHLL +G D+R++Q +LGH + TT I Sbjct: 99 LSESAVQKSVKSAIRNAGIAKHASCHTFRHSFATHLLESGYDIRTVQELLGHKDVRTTMI 158 Query: 298 YTNV 301 YT+V Sbjct: 159 YTHV 162 >gi|229014934|ref|ZP_04172022.1| Phage integrase [Bacillus mycoides DSM 2048] gi|228746346|gb|EEL96261.1| Phage integrase [Bacillus mycoides DSM 2048] Length = 351 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 72/287 (25%), Positives = 122/287 (42%), Gaps = 41/287 (14%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 S+ T + Y D FL ++ K TI TI LS+ E+ + + ++K +L+R Sbjct: 66 SERTKKIYLHDLSHFLRYI------KETIGTIHDLSHNEMEIYFYQL-SKKYAATTLRRK 118 Query: 92 LSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 + ++ FLKY+ ++ S+ L ++KK + + R L ++ N +L +T Sbjct: 119 KTVVQQFLKYVYDNTGLSDDYSSRLKKISVKKEDLVNRDLFPEEV-----NEILDALKKT 173 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIVPLLPS 205 + + +LL GLRI E + +++ S LR+ GKG+K R V + Sbjct: 174 SFF---MYTLFFLLTTTGLRIEEVANAKWADLVFHSSLNAYLLRVVGKGNKAREVRIFED 230 Query: 206 VRKAILEYYDLCPF--------DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 V D+C +L+ + G +Y+ + LP Sbjct: 231 VLD------DICHLRQLRKQTSELDASSTSAFLPKADGSYYRADYLSKYVAEKIEETNLP 284 Query: 258 L------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 T HT RH FA HL+ G +L+ I+ LGH + TT+ Y Sbjct: 285 FLRYRKDRITPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERY 331 >gi|218264265|ref|ZP_03478130.1| hypothetical protein PRABACTJOHN_03820 [Parabacteroides johnsonii DSM 18315] gi|218222157|gb|EEC94807.1| hypothetical protein PRABACTJOHN_03820 [Parabacteroides johnsonii DSM 18315] Length = 413 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 83/300 (27%), Positives = 129/300 (43%), Gaps = 48/300 (16%) Query: 32 SKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90 S +T+ Y+ R+ F+ FY ++ IT +LS I+AF +T+ L R Sbjct: 132 SPVTINRYKNVLRKLETFVPRFYEKDDITFH---ELSPDFIKAFDVFLKTEA----GLCR 184 Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150 + I ++K LKK I NM K+ K D V L T++E + Sbjct: 185 N--TIVRYMKCLKK--------ITNMAIAKEWMRKDPFYGYKMEQDETDPVFL-TNNELQ 233 Query: 151 WIDARNSAILYL-------LYGC--GLRISEALSLTPQNIMDDQS----------TLRIQ 191 I RN I L L+ C GL ++ +L P+++ D + L + Sbjct: 234 AIMNRNFDIPRLELVKDIFLFACFTGLAFADVSTLKPEHLEQDNNGDWWIRKGRVKLERR 293 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 K I +PLLP V AIL+ Y+ P L LP+ + Y++++ Sbjct: 294 RKSSSIANIPLLP-VPLAILKKYESHPICLKQGTCLPVVCNQKA--------NSYLKEIA 344 Query: 252 RYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 + G+ + T H RH+FAT + L+N L+ + ++LGH TQ Y V KN D M Sbjct: 345 DFCGIKKNLTTHAARHTFATTVTLANNVPLQEVSAMLGHASTRMTQHYARVMDKNLKDNM 404 >gi|89147361|gb|ABD62541.1| integrase [uncultured bacterium] Length = 163 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/93 (34%), Positives = 51/93 (54%) Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 A+ E+ F N + P R + + Q +++ + G+ + HT RHS Sbjct: 70 AVTEWTWQWVFPANKISKDPRSDQSRRHHASEDMLQSEVKRAVKRAGVAKRVSCHTFRHS 129 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 FATH+L +G D+R++Q +LGH + TTQIYT+V Sbjct: 130 FATHMLESGYDIRTVQELLGHSSVQTTQIYTHV 162 >gi|226363472|ref|YP_002781254.1| tyrosine recombinase [Rhodococcus opacus B4] gi|226241961|dbj|BAH52309.1| putative tyrosine recombinase [Rhodococcus opacus B4] Length = 272 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 77/154 (50%), Gaps = 26/154 (16%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILE 212 R +L L CGLR +E + +++ +D +L + GKG K R++PL Sbjct: 127 RERVMLRLASECGLRRAEVALVHSRDLSEDLCGWSLVVHGKGRKDRVLPL---------- 176 Query: 213 YYDLCPFDLNLNIQ-LP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 P ++ ++ LP F G L+P R++ +L L LP T H LRH Sbjct: 177 -----PDEIAAELRRLPRGWAFPGNDCGHLSP----RWVGKLMTEL-LPDDWTMHKLRHR 226 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 FAT N ++R++Q +LGH ++TTQ+YT V+ Sbjct: 227 FATRAYRNTRNIRAVQQLLGHESVATTQVYTAVD 260 >gi|197259952|gb|ACH56525.1| IntI1 [Salmonella enterica subsp. enterica serovar Virchow] Length = 130 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/65 (47%), Positives = 41/65 (63%) Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 50 FQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVL 109 Query: 303 SKNGG 307 G Sbjct: 110 KVGGA 114 >gi|258517018|ref|YP_003193240.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] gi|257780723|gb|ACV64617.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] Length = 321 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 8/163 (4%) Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI-- 199 LL ++ + R+ A+L L G+R EALSL ++ + I+ + K R+ Sbjct: 136 LLAIPDQSTYPGLRDYALLLLQLDSGIRPKEALSLLISDVNFKSLEVYIRAENAKTRVSR 195 Query: 200 -VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +P+ P KAI + ++ P D N +P+F G + + + + + LG L Sbjct: 196 TLPISPITAKAIQKLINVRPSDWN---DVPIFCSCEGNKMLGNTWYKRLSKYGEKLGTKL 252 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + LRH+FA L NGG+ ++Q LGH L+ T+ Y ++ Sbjct: 253 --YPYQLRHTFALEFLRNGGNSFALQKTLGHADLNMTKRYVSL 293 >gi|154000914|gb|ABS57025.1| integrase [uncultured bacterium] gi|154000916|gb|ABS57026.1| integrase [uncultured bacterium] gi|154000922|gb|ABS57029.1| integrase [uncultured bacterium] gi|154000936|gb|ABS57036.1| integrase [uncultured bacterium] Length = 158 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 40/60 (66%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 99 TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|89147500|gb|ABD62610.1| integrase [uncultured bacterium] Length = 163 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/58 (50%), Positives = 39/58 (67%) Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 Q+ ++ G+ T HTLRHSFATHLL G D+R++Q +LGH +STT IYT+V Sbjct: 105 QKMVKAASVRAGITKRVTVHTLRHSFATHLLEAGYDIRTVQELLGHSDVSTTMIYTHV 162 >gi|156138693|dbj|BAF75923.1| integron integrase [uncultured bacterium] Length = 180 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 40/68 (58%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 +R ++ Q+ I R GL HTLRHSFATHLL G D+R+ Q +LGH + Sbjct: 113 VRRHHIHETTVQKAITDAVRRAGLSKPAGCHTLRHSFATHLLEAGQDIRTTQELLGHSDV 172 Query: 293 STTQIYTN 300 STT IYT+ Sbjct: 173 STTMIYTH 180 >gi|89147642|gb|ABD62680.1| integrase [uncultured bacterium] Length = 164 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/59 (52%), Positives = 41/59 (69%), Gaps = 1/59 (1%) Query: 244 QRYIRQLRRYLGLPLSTTAHTLR-HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 QR +RQ R G+ T H+LR HSFATHLL +G D+R++Q LG+ + TTQIYT+V Sbjct: 105 QRAMRQALREAGIAKPATPHSLRRHSFATHLLESGADIRTVQEQLGYSDVRTTQIYTHV 163 >gi|28211234|ref|NP_782178.1| DNA integration/recombination protein [Clostridium tetani E88] gi|28203674|gb|AAO36115.1| DNA integration/recombination protein [Clostridium tetani E88] Length = 343 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 74/301 (24%), Positives = 131/301 (43%), Gaps = 48/301 (15%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS---------YTEIRA---FI 75 ++ L T+ SYE R F A Y E+ +I ++ ++ YT+ R F+ Sbjct: 29 QKDLRPKTIASYESTLRLF----ARYLEDTFSINNVKDITEEMCKDYITYTKERGKYTFV 84 Query: 76 SKRRT-------------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122 + + T +KI ++ + +K F + + +IT +N+ ++ K + Sbjct: 85 ADKNTTFINQPSNREDYGKKISTTTVNNYIRNLKVFFNWCIEERITNVNNMQRIKQFKNN 144 Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 L +++ LV L T TK+ + R+ I+ L+ G+RI E L+LT N+ Sbjct: 145 RISKDQLTDEEFKRLVR--YLDT---TKYHEFRDYVIIQLIIDTGMRIGETLALTIDNVD 199 Query: 183 DDQSTLRIQG---KGDKIRIVPL---LPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRG 235 D+ + IQ KG K R V + + K ++Y D DL LF RG Sbjct: 200 LDRRAILIQAEINKGRKDRYVFYSYTMSRLLKRWIQYKDRYVESDL-------LFCVKRG 252 Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 L F++ + + + + HTLR+++A L GG + + ILGH ++ T Sbjct: 253 TQLQISNFEKNFSKYIKRARIDKKISPHTLRNNYARRFLLAGGSIFDLSRILGHSSVTVT 312 Query: 296 Q 296 + Sbjct: 313 E 313 >gi|295098993|emb|CBK88082.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87] Length = 187 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/192 (25%), Positives = 91/192 (47%), Gaps = 14/192 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +LQ + S+ T+ +Y+ D QF +L E I + F+ + Sbjct: 6 ERFLQYIYRRNSQSEKTVDAYKRDLTQFKEYL-----ESQGITNFEDVDRLTFMNFLMEL 60 Query: 79 RTQKIG----DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 R G + ++ R +S +SF +YL + + + +++ K +P L Sbjct: 61 RVLPDGTSAKNSTIARKISTYRSFYRYLNEYIGINANPLSSIKTPKNKRKIPDFL----F 116 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 L+ ++N L T E ++ R+ + ++Y CGLR+SE ++L Q++ +Q +RI GKG Sbjct: 117 LSEIEN-FLDTYDENDPVEFRDKTMFTMMYACGLRVSELVNLKWQDVDLNQRCVRILGKG 175 Query: 195 DKIRIVPLLPSV 206 +K RIVP + Sbjct: 176 NKERIVPFFQRI 187 >gi|89147468|gb|ABD62594.1| integrase [uncultured bacterium] Length = 163 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/64 (48%), Positives = 40/64 (62%) Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L+ V Q + Q R + T HTLRHSFATHLL NG ++R +Q +LGH + TT I Sbjct: 99 LSEKVMQTAMHQAVRESDIAKHVTVHTLRHSFATHLLLNGTNIREVQELLGHKNVETTMI 158 Query: 298 YTNV 301 YT+V Sbjct: 159 YTHV 162 >gi|145594876|ref|YP_001159173.1| phage integrase family protein [Salinispora tropica CNB-440] gi|145304213|gb|ABP54795.1| phage integrase family protein [Salinispora tropica CNB-440] Length = 332 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 67/281 (23%), Positives = 118/281 (41%), Gaps = 18/281 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE-IRAFISK 77 + WL N R LS+ T +Y D +L + A + + + +Y + + + Sbjct: 27 EAWLAN----RRLSEHTRDAYRRDVGGWLDWCADADLDPLRATFLHVNAYARWLESTPTA 82 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNSLPRALNEKQAL 135 R + ++ R LS + S+ +L + + + + ++ + +S L ++ Sbjct: 83 RSGKPPTPATVARKLSALSSWYDFLVTLRAVGTNPVTGADRPHVDRDHSATIGLTPEE-- 140 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGK 193 VD +L T ARN A + LL GLR+ E +SL ++ ++ ++R GK Sbjct: 141 --VDALLTVADSATGPTAARNRAAVALLVDLGLRVGELVSLDVADLGTERGHHSVRFTGK 198 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYIRQL 250 G + R L P A+ Y + + PL G L+ R +R+L Sbjct: 199 GGRARRRALTPGASAAVQAYLTRRARTEGVPVHRLTGPLLVTSTGARLDRHSVFRLVRRL 258 Query: 251 RRYLGLP--LSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289 R +P + H+LRHSFAT + G L +Q +GH Sbjct: 259 AREASIPGWARLSPHSLRHSFATTARAEGVPLEDVQDAMGH 299 >gi|315038770|ref|YP_004032338.1| phage integrase family protein [Lactobacillus amylovorus GRL 1112] gi|312276903|gb|ADQ59543.1| phage integrase family protein [Lactobacillus amylovorus GRL 1112] Length = 322 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 76/292 (26%), Positives = 125/292 (42%), Gaps = 37/292 (12%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF-ISKRR 79 +L+ +IE G S+ T++ Y+ Q L K + IR+++ ++R + + ++ Sbjct: 51 FLEAKKIE-GCSERTIKYYKVTVEQLL---------KKVLHPIRKVTTEQMREYLVDYQK 100 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 G ++ I SF +L++ E IL S R +++ +A LV Sbjct: 101 INNCGKTTIDNVRRNISSFFSWLEE-----EDYILK--------SPMRRIHKIRAEKLVK 147 Query: 140 NVLLHTSHET--KWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 NV+ E D R+ A++ LLY G+R+ E + L +I + + GKGDK Sbjct: 148 NVITDEDIERLRDGCDCLRDVAMIDLLYSTGIRVGELVRLNRADINFSERECVVFGKGDK 207 Query: 197 IRIVPLLPSVRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 R V + ++ Y D L +++ P R L + +RQL R Sbjct: 208 ERRVYFDAKSKIHLINYLKSRTDDNPALFVSLDRPYSR------LKISGVEIRLRQLGRK 261 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 L L H R S AT + G + +Q ILGH ++ TT Y VN N Sbjct: 262 LNLD-RVHPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVNQNN 312 >gi|225028632|ref|ZP_03717824.1| hypothetical protein EUBHAL_02911 [Eubacterium hallii DSM 3353] gi|224954042|gb|EEG35251.1| hypothetical protein EUBHAL_02911 [Eubacterium hallii DSM 3353] Length = 359 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 58/224 (25%), Positives = 112/224 (50%), Gaps = 17/224 (7%) Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-KKSNSLPRALNEKQALTLVDNVLL 143 +R R + I++F K+ ++++ ++N ++ NL KK L + L+D V Sbjct: 118 ERGRMRKTASIRTFYKFFYRKQVI-KNNTASLLNLPKKHEHTIVRLEIDEIAKLLDAVEE 176 Query: 144 H---TSHETKWIDA---RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 T + K+ + R+ AIL LL G G+R+SE + + N+ + + ++I KG Sbjct: 177 GDNLTKSQKKYHNKTKIRDLAILTLLLGTGIRVSECVGIDISNLDFETNGMKIHRKGGAD 236 Query: 198 RIVPLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 I+ VR+A+L+Y + + P + + N LF ++ + ++ + +++ R Sbjct: 237 VILYFGEEVREALLDYLEEREKIIPKEGSEN---ALFLSMQKRRISVRAVENLVKKYARP 293 Query: 254 LGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + PL T T H LR ++ T L GD+ + +LGH ++TT+ Sbjct: 294 V-TPLKTITPHKLRSTYGTQLYQETGDIYLVADVLGHKDVNTTR 336 >gi|33867240|ref|NP_898798.1| putative transposase [Rhodococcus erythropolis] gi|33669074|gb|AAP74068.1| putative transposase [Rhodococcus erythropolis] Length = 373 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/150 (33%), Positives = 76/150 (50%), Gaps = 4/150 (2%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ +I L+ GLR E L+L +I +R+ GKG K R VPL V +++ Y Sbjct: 207 RDRSIAGLMLLSGLRSGEILALDGTDIDIGARWIRVFGKGAKERRVPLDVEV-AGLIQTY 265 Query: 215 DLCPFDLNLNIQLPLF-RGI-RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 L + + +L L +G RG+PL P + R R G+P + H LRH+F T Sbjct: 266 LLTERPESSSPRLFLVAKGPNRGQPLTPAGLRTIFRYHRIKSGVP-AGHPHALRHTFGTA 324 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + G DL +Q++LGH + TT Y ++ Sbjct: 325 MAEAGVDLAVMQALLGHAHVDTTARYIHLT 354 >gi|10954856|ref|NP_053276.1| hypothetical protein pTi-SAKURA_p038 [Agrobacterium tumefaciens] gi|6498209|dbj|BAA87661.1| tiorf36 [Agrobacterium tumefaciens] Length = 331 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 77/309 (24%), Positives = 135/309 (43%), Gaps = 34/309 (11%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI----SKR 78 Q L +R +S T+ SY + FL F T ++ + + + AF+ ++R Sbjct: 15 QRLMRQRNVSTHTVASYRDTFKLFLRFAHRKTGKQPSSLMLEDFDAELVIAFLDDLTAER 74 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R+ G + L+ I++F ++L + T I ++ ++P + ++ + + Sbjct: 75 RS---GTATYNLRLTAIRAFFRFLAFEEPTVSHQI------QRVLAIPGKIGTRREVQFL 125 Query: 139 --DNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGK 193 D + LL WI R+ +L G+R+SE + L + +D + +R GK Sbjct: 126 VRDEIKALLAAPDRRLWIGRRDYCLLLTAIQTGMRLSELVGLDRGAVTLDTGAHIRCFGK 185 Query: 194 GDKIRIVPL---LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ----RY 246 G K R+ PL L SV K L+ L D+ LF + G ++P Q ++ Sbjct: 186 GRKERVTPLTKILSSVLKQWLDEPRLGQSDI-------LFPTVHGSRMSPDAVQYLLAKH 238 Query: 247 IRQL-RRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 ++Q ++Y L + H LRHS A LL G D I LGH +TQ Y + + Sbjct: 239 VKQAAQQYPSLRAKRISPHVLRHSAAMELLDAGVDSTVISLWLGHESTRSTQAYLHAHLA 298 Query: 305 NGGDWMMEI 313 G + ++ Sbjct: 299 IKGAALAKV 307 >gi|330826868|ref|YP_004390171.1| integrase family protein [Alicycliphilus denitrificans K601] gi|329312240|gb|AEB86655.1| integrase family protein [Alicycliphilus denitrificans K601] Length = 331 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 79/287 (27%), Positives = 120/287 (41%), Gaps = 23/287 (8%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ----TIRQLSYTEIRAFISKRRTQK- 82 +R S T+ SY R L F + +I +Q T Q+ + + AF+ ++ + Sbjct: 22 QRQASPHTISSYRDSFRLLLRF----AQRRIGVQPQRLTFEQIDASLVAAFLEDLQSARG 77 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 I S L+ I+SF +Y T + I + + S RA A +D L Sbjct: 78 ISAASRNLRLTAIRSFFRYAAFELPTHAAQIQRVLAIP-SKRCTRAQIGFLAREEID-AL 135 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVP 201 LH R+ A++ L GLR+SE +L + + + +R+ GKG K R+ P Sbjct: 136 LHAPDLQTRAGRRDHALMLLAVQTGLRLSELTALRRDDTELGVGAHVRVIGKGRKERVTP 195 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ--LRRYLGLPL- 258 L + +A+ L D ++ +F RG L+ Q + + R P Sbjct: 196 LTKATAQALRAL--LREIDAEQDL---VFCSARGTRLSADAVQHLVSKHVARAAQSCPSL 250 Query: 259 ---STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 T H LRHS A LL G D I LGH + TTQIY + N Sbjct: 251 ACKHVTPHVLRHSAAMELLQAGVDRTVIAMWLGHESIETTQIYLDAN 297 >gi|158312284|ref|YP_001504792.1| integrase family protein [Frankia sp. EAN1pec] gi|158107689|gb|ABW09886.1| integrase family protein [Frankia sp. EAN1pec] Length = 329 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 118/290 (40%), Gaps = 22/290 (7%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L ++ S T+ +Y R L F T + + ++ L+ T I F+ Q+ G Sbjct: 16 LARQKKASPNTVAAYRDTCRLLLAFAQSKTGKPPSSLSLADLNATLIGEFLHHLEEQR-G 74 Query: 85 DRSLKRS--LSGIKSFLKYLKKRK---ITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + + R+ L+ I S Y R S +L + ++ ++ L ++ Sbjct: 75 NGTATRNARLAAIHSLFTYAAPRAPEHAAVISQVLAIPPRRRERAIVSYLTAEEI----- 129 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIR 198 + L+ + W R+ ++L L GLR+SE L Q+I + +R GKG K R Sbjct: 130 DALVAAPDRSTWHGRRDRSLLLLDVQTGLRVSELTGLNRQDIHLGAGPHVRCHGKGRKDR 189 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 PL K I + +L+ + PLF G L+ +R + + Sbjct: 190 ATPLTTQTVKVIRTWL----AELSPDPTGPLFPTQPGGRLSRDAVERLVAKHTATAADTC 245 Query: 259 ST------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + T HTLRHS A LL G D I LGH TTQIY + + Sbjct: 246 PSIKEKHVTPHTLRHSAAMTLLKAGVDTSVIALWLGHEGTETTQIYLHAD 295 >gi|78776978|ref|YP_393293.1| integron integrase [Sulfurimonas denitrificans DSM 1251] gi|78497518|gb|ABB44058.1| Integron integrase [Sulfurimonas denitrificans DSM 1251] Length = 320 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 58/193 (30%), Positives = 79/193 (40%), Gaps = 63/193 (32%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220 L+YGCGLR+SE ++ ++I + + GK K R +PL ++ Sbjct: 129 LMYGCGLRMSEVQNIRIKDIDFGFDKIYVWDGKSLKDRTLPLPMKIKD------------ 176 Query: 221 LNLNIQLPLFRGIRGKPLN--------PGVFQR------------YI------------- 247 L IQ+ R + K L P F+R YI Sbjct: 177 -ELKIQVEKVRELHQKDLKDGYGSVYIPYAFERKFPKAKFETKWQYIFPMNTIATDPRSG 235 Query: 248 -RQLRRYLGLPLS---------------TTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291 R+ L LS T+H RHS+ATHLL G DLRSIQ +LGH Sbjct: 236 ERRRHHILDATLSRNIKQAVTKSNIDKRVTSHIFRHSYATHLLQAGIDLRSIQELLGHKS 295 Query: 292 LSTTQIYTNVNSK 304 + TT IYT+V S+ Sbjct: 296 VETTMIYTHVVSE 308 >gi|331084863|ref|ZP_08333951.1| hypothetical protein HMPREF0987_00254 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410957|gb|EGG90379.1| hypothetical protein HMPREF0987_00254 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 354 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 69/300 (23%), Positives = 129/300 (43%), Gaps = 36/300 (12%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLA----FYTEE---KITIQTIRQLSYTEIRAFI---- 75 +E S T SY D R F FL Y + + T++ + QLS +I ++ Sbjct: 38 MEPTTSAKTRISYAYDIRTFFYFLVECNPLYRDRSTTQFTLEDLDQLSSVDIEEYLEYLK 97 Query: 76 ----SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131 S+ + ++ L R +S ++SF Y KR+ ++ L + K L+ Sbjct: 98 VYESSENKQITNSEQGLARKMSALRSFYGYFFKRQAIEKNPTLLVDMPKLHEKAIIRLDT 157 Query: 132 KQALTLVDNVLLHTSH----------ETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 + L+D + + +TK+ R+ AI+ LL G G+R+SE + L ++ Sbjct: 158 DEVAILLDYIETCGNQLTGQKKVYYEKTKY---RDLAIITLLLGTGIRVSECVGLDINDV 214 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGK 236 + +++ KG +V V KA+ +Y +L ++ LP LF + K Sbjct: 215 DFKNNGVKVTRKGGNEMVVYFGREVEKALRDYLELTRKNIT---PLPDHENALFLSTQRK 271 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + + +++ + + T H LR ++ T L GD+ + +LGH ++TT+ Sbjct: 272 RMGVQAVENMVKKYAKQVTPNKKITPHKLRSTYGTSLYKETGDIYLVADVLGHKDVNTTK 331 >gi|302387673|ref|YP_003823495.1| integrase family protein [Clostridium saccharolyticum WM1] gi|302198301|gb|ADL05872.1| integrase family protein [Clostridium saccharolyticum WM1] Length = 339 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 72/281 (25%), Positives = 117/281 (41%), Gaps = 33/281 (11%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLS 93 TL+ Y + + L FL + I ++ ++R + R Q I +++ L Sbjct: 73 TLKQYTTEICKMLDFLG---------KRIEDITAMDLRYYYGVMREQHGIKMTTMQTRLH 123 Query: 94 GIKSFLKYLKKRKITTESNI--LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 + SF +L ++ T + + + + L K+ P + E +AL + VL Sbjct: 124 YLSSFWDFLTTEELVTSNPVKRVGILKLAKTIKKPFSQEEMEALRVNCTVL--------- 174 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR---- 207 R+ A++ LY G+R+SE L +I + L + GKG K R V L + R Sbjct: 175 ---RDRALMEFLYSTGVRVSELALLNVCDIEMGRQELIVFGKGSKERKVYLTDNARFYLK 231 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKP---LNPGVFQRYIRQLRRYLGLPLSTTAHT 264 + + E PLF + +P L Q RQL R G+ H Sbjct: 232 RYLKERMKEEGITEEELENKPLFATL-DQPHARLTVAGIQYMFRQLGRRAGVK-KVHPHR 289 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 R + AT LL+ G + + +LGH +L TT IY V +N Sbjct: 290 FRRTIATDLLNRGMPVEQVSKLLGHEKLDTTMIYCTVQEEN 330 >gi|271965872|ref|YP_003340068.1| integrase family protein [Streptosporangium roseum DSM 43021] gi|270509047|gb|ACZ87325.1| integrase family protein [Streptosporangium roseum DSM 43021] Length = 339 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 59/231 (25%), Positives = 91/231 (39%), Gaps = 13/231 (5%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL---NEKQALTLVDNVLL 143 S+ R+ S FL + + + + + K+ P+ L A L Sbjct: 83 SVNRAWSAWNQFLSFCVAEGLLEGNPMAAVPRPKQPAKAPKPLLGDGSASATLLERIAAG 142 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--GKGDKIRIVP 201 W++ R+ +L L G+R +E L LT +I RIQ GKG + R +P Sbjct: 143 ARRARDPWVE-RDLVVLALALVTGMRSAELLGLTLGSIGGSPGDRRIQVVGKGGRSRSLP 201 Query: 202 LLPSVRKAILEYYD--LCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-- 256 + V + + Y + F L+ L L +PL G Q +RQ R+ G+ Sbjct: 202 IEAPVERLVERYLHSRMVRFGLSALPRSAALLVDTGNEPLRRGGLQYLVRQCYRHAGVHD 261 Query: 257 --PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 T H LRH FAT L G + +LGH + T Q Y ++ Sbjct: 262 RVQRGTLVHALRHEFATRLAERGASAHELMELLGHSSIVTGQAYIASTARE 312 >gi|223369798|gb|ACM88768.1| integrase [uncultured bacterium] Length = 163 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 33/42 (78%) Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T HTLRHSFATHLL G D+R++Q +LGH + TTQIYT+V Sbjct: 121 VTCHTLRHSFATHLLQAGPDIRTVQELLGHTDVKTTQIYTHV 162 >gi|168185301|ref|ZP_02619965.1| tyrosine recombinase [Clostridium botulinum Bf] gi|182671650|gb|EDT83611.1| tyrosine recombinase [Clostridium botulinum Bf] Length = 278 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 105/209 (50%), Gaps = 24/209 (11%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY-------TE------EKITIQTIRQL 66 ++L L +G S+ T++SY+ D F FL Y TE + I+ + I+ + Sbjct: 19 DFLNYLRTIKGKSENTIESYKLDLIMFFRFLKLYKGMVPGETEFNDIEIKDISDEDIKNI 78 Query: 67 SYTEIRAFIS-KRRTQKIGDRSLKRSLSGIKSFLKYLK-KRKITTESNILNMRNLKKSNS 124 S T++ AF+S + G + R ++ +KSF ++L+ K KI E+ L + + K S Sbjct: 79 SLTDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGKVKIIKENPALELESPKISKR 138 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 P LTL ++ L +S + K+ + R+ I+ + CGLR+SE + NI +D Sbjct: 139 NP------VYLTLDESKRLLSSIDGKFKE-RDLCIVTMFLNCGLRLSELCGINISNIKND 191 Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEY 213 L + GKG+K R V L + K + +Y Sbjct: 192 --ILTVVGKGNKERTVYLNKACIKTLNDY 218 >gi|138895723|ref|YP_001126176.1| integrase-recombinase protein [Geobacillus thermodenitrificans NG80-2] gi|196250982|ref|ZP_03149665.1| integrase family protein [Geobacillus sp. G11MC16] gi|134267236|gb|ABO67431.1| Integrase-recombinase protein [Geobacillus thermodenitrificans NG80-2] gi|196209546|gb|EDY04322.1| integrase family protein [Geobacillus sp. G11MC16] Length = 243 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 7/147 (4%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213 R+ I L G G+R+ E +L ++I +I GK K+ +PL + + + Sbjct: 80 VRDYTIFVTLLGTGMRLGELCNLKWEDIDFSSQRAKIFGKARKVETIPLNSKLLSELALW 139 Query: 214 YDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 + L +LP +F I+G+ L ++ ++L G+ +S H LRH+FA Sbjct: 140 KEYSSDSLG---KLPEYVFTNIKGERLGENGTKQVFKRLTNETGIKVS--PHMLRHTFAR 194 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIY 298 + +GGD+ + +L H + TT+IY Sbjct: 195 KFIESGGDVSVLSKLLRHSSIKTTEIY 221 >gi|89147559|gb|ABD62639.1| integrase [uncultured bacterium] Length = 163 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 40/61 (65%) Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 G+ Q +++ G+ H LRHSFATHLLS G D+R++Q +LGH +STT IYT+ Sbjct: 102 GILQTALKRAVDAAGIVKRANCHGLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTH 161 Query: 301 V 301 V Sbjct: 162 V 162 >gi|239627800|ref|ZP_04670831.1| phage integrase [Clostridiales bacterium 1_7_47_FAA] gi|239517946|gb|EEQ57812.1| phage integrase [Clostridiales bacterium 1_7_47FAA] Length = 331 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 76/308 (24%), Positives = 138/308 (44%), Gaps = 32/308 (10%) Query: 20 NWLQNLEIERGLSKLTLQSYECDT----RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 N + E++ + K+ ++Y T ++FL L Y + +Q I E + Sbjct: 49 NIISFPELDIFIGKIRFENYSVSTVNQYQRFLTDLLIYVGK--PVQEIAGEDVVECLNYY 106 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 + R + KR ++ SF +L +R +++ + + +K + AL ++ Sbjct: 107 EQARKISSSTKDHKRRIAS--SFFTFLHERGYISKNPMSTVDPIKYVAEIREALTSREVE 164 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-RIQGKG 194 L + T + R++A+L L G R+SE +S+ ++ MD Q+ ++ GKG Sbjct: 165 KL--RIACGT-------NIRDNAVLELFLASGCRVSEVVSMRVED-MDLQAGCGKVLGKG 214 Query: 195 DKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 K R+V LE Y D + L+ + P ++G++ L + IR++ + Sbjct: 215 KKERMV-FFNDRAMEYLERYLGDRRSGAVILSKRAP-YQGLKKNAL-----ENIIRKIAK 267 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 GL H LRH+FAT L+ G L ++ ++GH + TT+IY +KNG + Sbjct: 268 KAGLGKRVFPHLLRHTFATRALNKGMPLPTLCDLMGHSSVETTRIY----AKNGAGKIRY 323 Query: 313 IYDQTHPS 320 YD S Sbjct: 324 EYDMYAAS 331 >gi|188526757|gb|ACD62260.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 40/60 (66%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 99 TFQRAFKRAVEQAGIMKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|322433743|ref|YP_004215955.1| integrase family protein [Acidobacterium sp. MP5ACTX9] gi|321161470|gb|ADW67175.1| integrase family protein [Acidobacterium sp. MP5ACTX9] Length = 304 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 71/312 (22%), Positives = 131/312 (41%), Gaps = 57/312 (18%) Query: 20 NWLQNLEIERGLSKL---TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 N+ LE + + K+ TL +Y D + F +FLA ++IT Q+ + I FI+ Sbjct: 2 NFEPFLEFYKNIKKVSDDTLAAYRSDLKHFGLFLATEHVDRIT-----QIDHALIAKFIT 56 Query: 77 KRRTQK--------IGDRSLKRSLSGIKSFLKYLKK---RKITTESNILNMRNLKKSNSL 125 + + D ++ R L+ + SF Y + RK+ + I + N K N+ Sbjct: 57 YMKISGKGKGGKVGLSDATIARRLAAVSSFFDYTRATTGRKL--HNPIEDFSNRWKRNNK 114 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 P+ + E +++ +L + R+ ++ L GLR+ E L I+ +Q Sbjct: 115 PKPVEE----VVLEKLL------SAITSPRDRVLINLFLATGLRLGEMEQLNRDTIVIEQ 164 Query: 186 ------------STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN----IQLPL 229 T ++GKG KIR ++ L P+ +N L Sbjct: 165 HKGNGPNECFVIGTGEVEGKGGKIRTF---------MVSQQALIPYARYVNGRKDDHPAL 215 Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289 F R + ++ Q + + G+ T H LRH++ T L++ G D+ ++ ++GH Sbjct: 216 FISERKQRMSERAMQERLAHWCKVAGVS-HTNVHRLRHTYGTRLVNAGMDILQLKELMGH 274 Query: 290 FRLSTTQIYTNV 301 ++TT Y + Sbjct: 275 SSVATTLNYAKI 286 >gi|260462709|ref|ZP_05810915.1| phage integrase family protein [Mesorhizobium opportunistum WSM2075] gi|259031615|gb|EEW32885.1| phage integrase family protein [Mesorhizobium opportunistum WSM2075] Length = 106 Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 42/68 (61%) Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 P++ R +++ G+ + HTLRHSFATHLL D+R IQ +LGH +L TT Sbjct: 16 PISSRQLHRAVQEAAEVAGIRKRVSPHTLRHSFATHLLEQDVDIRVIQVLLGHSKLDTTA 75 Query: 297 IYTNVNSK 304 +YT V+++ Sbjct: 76 LYTKVSTR 83 >gi|94442288|dbj|BAE93643.1| integron integrase [uncultured bacterium] Length = 162 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 3/98 (3%) Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 PS KA + Y PF N P + ++ Q+ I+Q + +H Sbjct: 67 PSAAKAWMWQY---PFPSNHWCFDPDLGTMNRHHVHQTTVQKSIKQAVTRCDINKRVGSH 123 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 RH FATHLL NG D+R+IQ +LGH ++TT IYT+V Sbjct: 124 AFRHCFATHLLQNGHDIRTIQELLGHKHVTTTMIYTHV 161 >gi|291291809|gb|ADD91771.1| integrase [Pseudomonas aeruginosa] Length = 132 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/65 (47%), Positives = 41/65 (63%) Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 52 FQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVL 111 Query: 303 SKNGG 307 G Sbjct: 112 KVGGA 116 >gi|229193213|ref|ZP_04320164.1| Integrase [Bacillus cereus ATCC 10876] gi|228590190|gb|EEK48058.1| Integrase [Bacillus cereus ATCC 10876] Length = 345 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 60/250 (24%), Positives = 114/250 (45%), Gaps = 16/250 (6%) Query: 63 IRQLSYTEIR----AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118 I L Y IR FI+ R + + + ++ L +S L YL++ ++ + + N+R Sbjct: 80 INYLQYDAIRYDGHKFITNREERGLKETTINIRLRTYRSMLNYLEREELIEYNPMDNVRL 139 Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178 L++ L L E + +L ++ ++ R+ I+ LL GLRI+EAL+L Sbjct: 140 LRQDIDLTNCLTEDEV-----KAVLAQPNQRDYVGFRDFVIINLLLDSGLRINEALNLRV 194 Query: 179 QNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235 + I + + G K K R VP+ V K +L+ + + +F G Sbjct: 195 EEIDFKTRFITLTGERNKNRKPRYVPISAFVAKLLLQLIEENRAHFKTD---RIFLSCFG 251 Query: 236 KPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 + L F + ++ G+ TAH RH++A +++ NG D ++Q + G + T Sbjct: 252 ELLGANHFNKRLKYYAEKAGIKGKKVTAHVYRHTWAKNMILNGCDPFTLQKMGGWADMRT 311 Query: 295 TQIYTNVNSK 304 + Y ++++ Sbjct: 312 MRRYIQMDTE 321 >gi|327309842|ref|YP_004336740.1| integrase family protein [Pseudonocardia dioxanivorans CB1190] gi|326955177|gb|AEA28873.1| integrase family protein [Pseudonocardia dioxanivorans CB1190] Length = 337 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 78/297 (26%), Positives = 120/297 (40%), Gaps = 31/297 (10%) Query: 6 LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ 65 LP +V+ LL +R S+ T ++Y D R FL + A + + + + + Sbjct: 43 LPRLVTAFLLGQR-------------SEHTRRAYRSDIRHFLAWCAQHHVDALRARRVHI 89 Query: 66 LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 +Y A S R + + ++ R L+ + Y + S + + Sbjct: 90 DAYVASMAAPSPRTGRPAAESTVARRLATLAGLYAYGIAEDLLDRSPLGGVHR------- 142 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 PR + + L + + AR A+L LL GLRI EALS ++ ++ Sbjct: 143 PRLGQDSTSTGLARDEVARLLAAAAADGARAHALLSLLAHNGLRIDEALSRDVDHLQTER 202 Query: 186 S--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 LR++ KG PL P V A+ Y L+ PLF G+ ++ Sbjct: 203 GHQVLRLRRKGGHTATAPLAPPVVHALQVY-------LDGRETGPLFMTRTGRRMDEPAA 255 Query: 244 QRYIRQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 R IR+L R LP + HTLRH F T L G LR +Q GH TT+ Y Sbjct: 256 WRLIRRLARRAELPQADRINPHTLRHGFVTAALDAGVSLRDVQDSAGHADPRTTRAY 312 >gi|148544647|ref|YP_001272017.1| phage integrase family protein [Lactobacillus reuteri DSM 20016] gi|184154000|ref|YP_001842341.1| integrase [Lactobacillus reuteri JCM 1112] gi|227365077|ref|ZP_03849107.1| phage integrase/recombinase [Lactobacillus reuteri MM2-3] gi|325682980|ref|ZP_08162496.1| phage integrase family integrase/recombinase [Lactobacillus reuteri MM4-1A] gi|148531681|gb|ABQ83680.1| phage integrase family protein [Lactobacillus reuteri DSM 20016] gi|183225344|dbj|BAG25861.1| integrase [Lactobacillus reuteri JCM 1112] gi|227069885|gb|EEI08278.1| phage integrase/recombinase [Lactobacillus reuteri MM2-3] gi|324977330|gb|EGC14281.1| phage integrase family integrase/recombinase [Lactobacillus reuteri MM4-1A] Length = 322 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 77/285 (27%), Positives = 119/285 (41%), Gaps = 40/285 (14%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF-ISKRRTQKIGDRSL 88 G S T++ Y Q L K ++ +R+++ E+R + + ++ G ++ Sbjct: 59 GCSDRTIKYYRVTVEQLL---------KKVVRPVRRITTEEMREYLVDYQKINNCGKTTI 109 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 I SF +L++ E IL S R +++ +A LV NV+ E Sbjct: 110 DNIRRNISSFFSWLEE-----EDYILK--------SPMRRIHKIRAEKLVKNVITDEDIE 156 Query: 149 TKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 K D R+ AI+ LLY G+R+ E + L +I + + GKGDK R V Sbjct: 157 -KLRDGCSCLRDVAIIDLLYSTGIRVGELVRLNRTDINFSERECVVFGKGDKERRVYFDA 215 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN----PGVFQRYIRQLRRYLGLPLST 260 + ++ Y + N P KP + GV R +RQL R L L Sbjct: 216 KSKVHLINYLR------SRNDDNPALFVSLDKPNDRLKISGVEIR-LRQLGRKLHLD-RI 267 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 H R S AT + G + +Q ILGH ++ TT Y VN N Sbjct: 268 HPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVNQNN 312 >gi|294776786|ref|ZP_06742249.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] gi|294449262|gb|EFG17799.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] Length = 404 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 16/166 (9%) Query: 143 LHTSHETKWIDARNSAILYLLYGC---GLRISEALSLTPQNIMDDQS----TLRIQGKGD 195 LH E K+ R A+ + C GL ++ L P++I D + + + K + Sbjct: 230 LHAIMEKKFDIPRLEAVRDIFVFCCLSGLAFTDVQHLKPEHITKDINGEWWIRKAREKTN 289 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 + +PLL + I+E Y P L N+ LP+ P N + Y++++ G Sbjct: 290 NMCHIPLL-DIPAMIIEKYRKNPVCLQKNVVLPV-------PSNQRM-NSYLKEIADVCG 340 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T H RHSFA L+N + +I +LGH + TT+IY V Sbjct: 341 ITKKLTTHCARHSFACFALANKVSMETIAKMLGHSDIRTTKIYAKV 386 >gi|255280908|ref|ZP_05345463.1| putative tyrosine recombinase XerC [Bryantella formatexigens DSM 14469] gi|255268356|gb|EET61561.1| putative tyrosine recombinase XerC [Bryantella formatexigens DSM 14469] Length = 352 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 66/295 (22%), Positives = 124/295 (42%), Gaps = 28/295 (9%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEE----------KITIQTIRQLSYTEIRAFI- 75 IE S T SY D R +F F EE IT+ + ++ +I ++ Sbjct: 38 IEPTTSTRTRISYAYDIR---VFFQFLLEENPSLRGKEMTDITLDILDKIKPVDIEEYLE 94 Query: 76 ------SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 S+ + G+R+LKR + ++ F Y KR++ + L + K + L Sbjct: 95 YLKVYQSEDGLKTNGERALKRKMVALRGFYAYYFKREMIKTNPTLLVDMPKIHDKAIVRL 154 Query: 130 NEKQALTLVDNV-----LLHTSHETKW--IDARNSAILYLLYGCGLRISEALSLTPQNIM 182 + + +L+D + L + W R+ A++ LL G G+R+SE + L ++ Sbjct: 155 DTDETASLLDYIEHAGDSLSGQKKVYWEKTKRRDLALVTLLLGTGIRVSECVGLDIGDVD 214 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPG 241 + +++ KG +V V KA+ +Y + C + LF + K + Sbjct: 215 FKNNGIKVVRKGGNEMVVYFGDEVEKALRDYLEERCGITPVAGSENALFLSTQRKRIGVQ 274 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + +++ R + T H LR ++ T L D+ + +LGH ++TT+ Sbjct: 275 AVENLVKKYARQITTTKKITPHKLRSTYGTSLYQETNDIYLVADVLGHKDVNTTK 329 >gi|223369848|gb|ACM88793.1| integrase [uncultured bacterium] Length = 163 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 43/69 (62%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 +R L P QR +++ G+ + HTLRHSFATHLL D+R++Q +LGH + Sbjct: 94 VRRHYLYPERLQRALKRAVGQAGIAKHVSVHTLRHSFATHLLQPNTDIRTVQELLGHSDV 153 Query: 293 STTQIYTNV 301 STT IYT+V Sbjct: 154 STTMIYTHV 162 >gi|89098245|ref|ZP_01171130.1| integrase-recombinase [Bacillus sp. NRRL B-14911] gi|89087102|gb|EAR66218.1| integrase-recombinase [Bacillus sp. NRRL B-14911] Length = 374 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 82/309 (26%), Positives = 131/309 (42%), Gaps = 44/309 (14%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEE-KITIQTIRQLSYTEIRAFISKRRTQ 81 Q+L + S T++ Y+ + QF+ L Y+ E I I+TIR S + A RR Q Sbjct: 53 QHLNHKHDKSSRTIKEYKLEINQFVEQLLKYSLEINIDIETIRSSSLFKSLAPRHIRRYQ 112 Query: 82 K--------------IGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSL 125 + +L R + + +FLK+L + K + L M ++K + Sbjct: 113 EWLATKSPYVQKKGSYAPATLARKTTILNNFLKFLYESKYIEDPLHQGLLMASIKNEDRP 172 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI---- 181 R L + + L++ H K AI+++L GLR E +L ++I Sbjct: 173 NRDLGPAEVIQLLN-------HFRKEKHPIAFAIIHILTTTGLRNEEFCNLKVKDIQYDS 225 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL------NIQLPLFRGIRG 235 ++D L++ GKG+K R VPL R+ L+ + + L + PLF G Sbjct: 226 INDGHFLQVLGKGNKSREVPL----REKTLDSIHMFRYARGLEEIAAADKDSPLFTTNTG 281 Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTT------AHTLRHSFATHLLSNGGDLRSIQSILGH 289 +P +Y+ + LP HTLRHSFA + D+ I LGH Sbjct: 282 SAFSPSYLSQYLTNTIKQSQLPFLDGRSSLIGPHTLRHSFAIISYLSKVDIYQIMRSLGH 341 Query: 290 FRLSTTQIY 298 ++ TT IY Sbjct: 342 EKIETTVIY 350 >gi|291545712|emb|CBL18820.1| Site-specific recombinase XerD [Ruminococcus sp. SR1/5] Length = 322 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 63/277 (22%), Positives = 117/277 (42%), Gaps = 24/277 (8%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDRSL 88 G S+ T+Q Y+ L + ++R+++ EIR ++++ ++ K + ++ Sbjct: 59 GCSERTIQYYKVTVEHLLSHIE---------TSVRKITTEEIRTYLAEYQKNNKCSNVTV 109 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 I SF +L++ +S + + +K + + ++ L DN Sbjct: 110 DNIRRNISSFFSWLEEEDYILKSPMKRIHKIKTKTVVKSVITDEGIERLRDNCK------ 163 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 + R+ AI+ LLY G+R+ E ++L +I + + GKGDK R V + Sbjct: 164 ----EIRDLAIIDLLYSTGIRVGELVNLNVDDIDLEGRECIVYGKGDKERRVYFDAKAKV 219 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 + EY + N + + GV R +R+L + + L H R + Sbjct: 220 HLKEY--IAHRKDNNSALFVTLDAPHDRLKISGVEIR-LRELGKRIDLE-RIHPHKFRRT 275 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 AT + G + +Q ILGH ++ TT Y VN N Sbjct: 276 MATRAIDKGMPIEQVQKILGHSQIDTTMQYAMVNQNN 312 >gi|257465870|ref|ZP_05630181.1| integrase/recombinase [Fusobacterium gonidiaformans ATCC 25563] gi|315917027|ref|ZP_07913267.1| tyrosine recombinase xerD-like protein [Fusobacterium gonidiaformans ATCC 25563] gi|313690902|gb|EFS27737.1| tyrosine recombinase xerD-like protein [Fusobacterium gonidiaformans ATCC 25563] Length = 262 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 65/268 (24%), Positives = 121/268 (45%), Gaps = 36/268 (13%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 E + +Q ++ +LE++RGLS+ +L++ + D QFL ++ Y + ++T+ T++ + Sbjct: 3 EFILWKQKYIHHLELQRGLSQNSLRAIQKDLEQFLNYMEEYQDGELTVLTLKSYFF---- 58 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE- 131 +K +++R +S IK FL++LK+ I E L ++K + Sbjct: 59 -----HLQEKHASNTIQRKISSIKVFLRFLKEENIVQEDFSLYFTKVRKEEDTILFFEKD 113 Query: 132 --KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 +Q + +N L R+ AI LLY G++ E LSLT I ++ + Sbjct: 114 VWEQFRRIFENNL------------RDKAIFELLYSTGMKPKEFLSLTYLQIQWEKQEIY 161 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 K + R V ++A+ Y C ++ K L +F++Y + Sbjct: 162 FFQKKES-RTVFFSHRAKEALWNY---CE---EKGMKEGRIWDFSEKTLR-NIFKKYREK 213 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNG 277 + GL + T ++ RH+FA LL G Sbjct: 214 IS---GLE-NMTIYSFRHTFAITLLRAG 237 >gi|158522719|ref|YP_001530589.1| integrase family protein [Desulfococcus oleovorans Hxd3] gi|158511545|gb|ABW68512.1| integrase family protein [Desulfococcus oleovorans Hxd3] Length = 210 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 80/175 (45%), Gaps = 7/175 (4%) Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QG 192 T+ D + S + K R ++ L+ GLR+ E +L ++ + +G Sbjct: 29 TVKDKAVADQSKKNK-TGIREWMVIDLITSTGLRVEEVSNLRCGDLKAGYGQCEVFVSRG 87 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 KG + R V + S++ + +Y + LF G RG P Q+ +++ Sbjct: 88 KGGRSRTVEIPQSLKTHLNQYLKWKKEQQERIGPSNYLFVGQRG-PWTAQAIQQLVKKYL 146 Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + LGL + H LRHS+A L DLR++Q LGH + TTQIY +V ++ Sbjct: 147 KKLGLYERGKSVHALRHSYAVQLYRKKRDLRAVQKQLGHASIQTTQIYADVTKED 201 >gi|291485998|dbj|BAI87073.1| hypothetical protein BSNT_05256 [Bacillus subtilis subsp. natto BEST195] Length = 329 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 91/212 (42%), Gaps = 12/212 (5%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 L GIKS L + KR + E+ + L+ + L + Q + T + Sbjct: 102 LGGIKSILSRMTKRGLINENPAKRVTKLRVDEKTIKMLTDSQVRRFFKMIDKDT-----F 156 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRK 208 R+ + CGLR +E L P++I D + + G K K R+VP+ V + Sbjct: 157 PGFRDYVAFLIALKCGLRSNELEGLKPEDIDFDNLVIMLPGAVNKNRKNRMVPMTEQVAE 216 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLR 266 + + L +F G+ + ++ + L + H+LR Sbjct: 217 ELRQL--LTEMTEYFGTFTHVFVNQYGEKIAKDHLRKRAAKYGEMADLKKECRPSLHSLR 274 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 H+FA + L NG D+RS+Q I+GH L++T+IY Sbjct: 275 HTFAINYLRNGSDIRSLQKIMGHADLASTEIY 306 >gi|94972399|ref|YP_595617.1| integrase/recombinase [Lawsonia intracellularis PHE/MN1-00] gi|94731936|emb|CAJ53953.1| similar to integrase/recombinase [Lawsonia intracellularis PHE/MN1-00] Length = 361 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 108/242 (44%), Gaps = 21/242 (8%) Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT---ESNILNMRNLKKSN--- 123 ++ AFI R+ ++ + +KSF ++L I T + + RN K N Sbjct: 112 DVDAFIRYRQLNGSKPATINTIIGALKSFFRHLVDAGILTLNPTAFLKKRRNDTKQNLPG 171 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 L +L+E + L D ++ + R+ A++ +L+ G+R EA+ L +I+ Sbjct: 172 HLSHSLSESELQRLFDGMIEQGA------SLRDQALMQVLFLTGIRAEEAVRLKWSHIVT 225 Query: 184 DQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLFRGIRGKP--- 237 QS L + GKG K R V L I EY L +L L + PLF +R +P Sbjct: 226 WQSRWYLDVFGKGSKRRRVYLPIQALTVIQEYGKLLGIELGLASNSKPLFAHLR-RPNEH 284 Query: 238 -LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 G++ + +R LG + H RHS T L G L SI+++ GH + TT Sbjct: 285 ISRHGLYVLVKKWCKRLLGRT-DVSPHWFRHSCFTQLAHKGASLESIKALAGHESVETTM 343 Query: 297 IY 298 Y Sbjct: 344 QY 345 >gi|289192574|ref|YP_003458515.1| integrase family protein [Methanocaldococcus sp. FS406-22] gi|288939024|gb|ADC69779.1| integrase family protein [Methanocaldococcus sp. FS406-22] Length = 326 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 76/320 (23%), Positives = 132/320 (41%), Gaps = 30/320 (9%) Query: 1 MEGNNL---------PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLA 51 M+GN L P+ E E + W+ ER + + D + +FL Sbjct: 1 MKGNGLNFKNLLLVKPKREKVEESPEIKKWVDRFREEREFDGIKESTIRSDILRLRVFLD 60 Query: 52 F-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK---KRKI 107 F Y T +T+ + ++ K R K+ S + +K F + ++ R+ Sbjct: 61 FVYNRLNKTPETMTNADFVRFFNYLEKER--KVSRSSQDKYFKLLKVFYRLMRLNNFREF 118 Query: 108 TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167 ES R K + AL L+ ++ ++ + RN I+ LL+ G Sbjct: 119 AEESK--ERRRFSKFEVKHYDAIDANALNLILEKMMESNSR---MSIRNCLIVRLLWDTG 173 Query: 168 LRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226 RISE L+L ++ D+ T RI K + R+V +A+ Y P N Sbjct: 174 ARISEVLNLKYKDCDFDEGTFRITNTKTHEERVVVCSSDTLEALRWYVQFNP---RQNSD 230 Query: 227 LPLFRGIRGKPLNPG----VFQRYIRQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDL 280 +F+ +G+ ++ VF+R + +L++ +P + H+LRH A LL G + Sbjct: 231 DYIFQTPKGERVSKDTIYKVFKRAVDELKKEGKIPKNKRIVLHSLRHGRAVDLLDKGVPI 290 Query: 281 RSIQSILGHFRLSTTQIYTN 300 ++ LGH L TT Y++ Sbjct: 291 DIVKEYLGHRSLDTTLYYSH 310 >gi|126664399|ref|ZP_01735383.1| putative transcriptional regulator, Fis family protein [Marinobacter sp. ELB17] gi|126667639|ref|ZP_01738608.1| putative transcriptional regulator, Fis family protein [Marinobacter sp. ELB17] gi|126627908|gb|EAZ98536.1| putative transcriptional regulator, Fis family protein [Marinobacter sp. ELB17] gi|126630725|gb|EBA01339.1| putative transcriptional regulator, Fis family protein [Marinobacter sp. ELB17] Length = 301 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/222 (24%), Positives = 104/222 (46%), Gaps = 19/222 (8%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 ++K +G++ F K++ + T +++ + +LP L + + ++ V+ HT Sbjct: 71 TVKVDRNGLQFFYKHVLNKTWT----WVDIVKPPQKKTLPDILTQAE----IERVINHTR 122 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPS 205 + R + + Y GLR+ EAL+L +I + + ++ GKG K R+V L P+ Sbjct: 123 ------ELRYQTFILVAYSMGLRLGEALNLKVGDIDGQRMKVHVRLGKGQKDRVVTL-PT 175 Query: 206 VRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 + + L YY P L + P R + ++ Q+ + + + + T Sbjct: 176 ITRTALRYYWSTHRHPQFLFPRGRTPEERKLAIAVMDRSGLQKSFKAILKSCNIHKDITP 235 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 H+LRH + HL ++ LR+IQ +GH TT IYT + + Sbjct: 236 HSLRHCYGAHLTASNLHLRAIQFEMGHACPKTTAIYTQLTDE 277 >gi|291294978|ref|YP_003506376.1| integrase family protein [Meiothermus ruber DSM 1279] gi|290469937|gb|ADD27356.1| integrase family protein [Meiothermus ruber DSM 1279] Length = 251 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 10/153 (6%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYD 215 +L L+ G R+SE + L Q++ D + + K D +R VP+LP++ + + Sbjct: 95 MLKTLFYTGCRVSEFVFLRAQDLHLDGEAPHLYVHKAKKDSVRYVPILPALAQELR---- 150 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275 L + LF R + +P Q+ I+ + GL H LRHS A LL Sbjct: 151 ---VHLAGRTRGYLFESNRHQRYSPRAVQKLIQAAAKEAGLERRVYPHLLRHSVAQILLD 207 Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 G L +Q LGH L TTQIY + + G+ Sbjct: 208 RGMPLEQLQKFLGHRDLKTTQIYAESSLEQVGE 240 >gi|224543618|ref|ZP_03684157.1| hypothetical protein CATMIT_02828 [Catenibacterium mitsuokai DSM 15897] gi|224523444|gb|EEF92549.1| hypothetical protein CATMIT_02828 [Catenibacterium mitsuokai DSM 15897] Length = 340 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 79/310 (25%), Positives = 138/310 (44%), Gaps = 33/310 (10%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 M+ +++ +I + ++ ++ + EIE G SK T Q Y + L+ L T+ T Sbjct: 49 MQEDSIQDIFEYSNMELIDKFIASKEIE-GCSKRTTQYY----KSTLVMLENRTDIHFTH 103 Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 T L T + + K+ +++R+LS SF +L++ +S + + +K Sbjct: 104 MTTDHLR-TYLTDYQKINNCSKVSIDNIRRNLS---SFFSWLEEENYILKSPMKRIHKIK 159 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 + L+++ L D+ + R+ AI+ LL G+R+ E +++ ++ Sbjct: 160 TDKVIKETLSDESLECLRDSC----------DNLRDLAIIDLLASTGMRVGELVNINIED 209 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAI-LEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239 I + + GKG+K R P+ R I L+ Y D N + + L KP N Sbjct: 210 IDFENRECVVFGKGNKER--PVYFDARTKIHLKNYLKSRTDDNPALFVSL-----DKPFN 262 Query: 240 ----PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 GV R +R L R LG+ H R + AT + G + +QS+LGH ++ TT Sbjct: 263 RLQISGVEIR-LRNLGRRLGIH-RVHPHKFRRTVATRAIDKGMPIEQVQSLLGHSQIDTT 320 Query: 296 QIYTNVNSKN 305 Y VN N Sbjct: 321 MHYAMVNQNN 330 >gi|291295938|ref|YP_003507336.1| integrase family protein [Meiothermus ruber DSM 1279] gi|290470897|gb|ADD28316.1| integrase family protein [Meiothermus ruber DSM 1279] Length = 339 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 72/289 (24%), Positives = 131/289 (45%), Gaps = 27/289 (9%) Query: 31 LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR----------T 80 LS TL++Y R +L A+ E +++ ++ S ++ +I+ + Sbjct: 48 LSPRTLENYRLAVRDYL---AWAWSETQSLEILKA-SSDDLDRYIAHLQLYGGNLEPGER 103 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 Q++ S+ L+G+++F + L+ + + R+ AL E L+D+ Sbjct: 104 QRLKPGSIATYLAGVRAFYRALEWANAAKLPQVHSPRDPTPPEERRPALPEDLYKKLLDH 163 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRI 199 L E + R+ + L+ GLRISE ++L+ ++ + L ++ GKG K R Sbjct: 164 -LSGADPEHR----RDRLAVRLMAEAGLRISEVINLSLDDLSLAERLLLVRAGKGGKQRT 218 Query: 200 VPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 VPL S+ + I ++ L P + +L I L R G+ + +R + Q R L Sbjct: 219 VPLSKSLAQEIQDWLKLRLAHAAPNEQSLLINLG-GRKAYGRAMTDKSLRRILNQHYRDL 277 Query: 255 GLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 G P AH LRH+ T + DL + +LGH ++T+ IY ++ Sbjct: 278 GFPKRYYGAHMLRHTAGTRIYKKSRDLHATARLLGHANVNTSAIYAKMD 326 >gi|301166099|emb|CBW25674.1| putative integrase [Bacteriovorax marinus SJ] Length = 399 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 13/142 (9%) Query: 166 CGLRISEALSLTPQNIMDDQS----TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221 CGL + + T N++ ++S +R K + R VP+ VR D+ L Sbjct: 252 CGL-CWDRVDFTTNNLVINRSLTRDGIRNTTKTHRGRYVPMNTIVR-------DILQKRL 303 Query: 222 NLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280 I +F GKPL V QR+ ++ +R GL H LRH+FA+H + NGG++ Sbjct: 304 RTRISKFVFSTQTGKPLPYDHVTQRHFKKSQREAGLENIIRFHDLRHTFASHFMMNGGNI 363 Query: 281 RSIQSILGHFRLSTTQIYTNVN 302 ++Q +LGH + TT IY +++ Sbjct: 364 YTLQKLLGHTDIKTTMIYAHLD 385 >gi|145590019|ref|YP_001156616.1| phage integrase family protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048425|gb|ABP35052.1| phage integrase family protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 193 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 21/186 (11%) Query: 132 KQALTLVDN----VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 KQA TL VL +T+ T+ RN A+L + G+R+ E SL +++D + Sbjct: 3 KQAKTLTQQELRRVLDYTA--TRKHSVRNRALLMTTHLSGMRVGEVASLRNSDVLDAEGN 60 Query: 188 LR-------IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240 +R Q KG++ R+V + +RK LE Y + +N L F K + Sbjct: 61 IRNEIRLSAEQTKGNEARVVFVSDKLRKE-LELYTHLMRNAYVNPALKFF--YSQKRTSD 117 Query: 241 GVFQRYIRQLRRYL----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 G + Q YL G+ ++H+ R +F T+L + G +R + S+ GH +STTQ Sbjct: 118 GFTANTLTQFFHYLYKRAGID-GASSHSGRRTFITNLATKGVGVRVLMSLAGHKNISTTQ 176 Query: 297 IYTNVN 302 Y +VN Sbjct: 177 AYIDVN 182 >gi|89147582|gb|ABD62650.1| integrase [uncultured bacterium] Length = 163 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 40/61 (65%) Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 G+ Q +++ G+ H+LRHSFATHLL N D+R++Q +LGH +STT IYT+ Sbjct: 102 GILQNALKRAVDAAGIVKRANCHSLRHSFATHLLGNSYDIRTVQELLGHKDVSTTMIYTH 161 Query: 301 V 301 V Sbjct: 162 V 162 >gi|315651157|ref|ZP_07904189.1| phage integrase family site-specific recombinase [Eubacterium saburreum DSM 3986] gi|315486622|gb|EFU76972.1| phage integrase family site-specific recombinase [Eubacterium saburreum DSM 3986] Length = 351 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 68/290 (23%), Positives = 124/290 (42%), Gaps = 39/290 (13%) Query: 38 SYECDTRQFLIFL---------AFYTEEKITIQTIRQLSYTEIRAFIS-----KRRTQKI 83 +Y D + FL FL + I + + LS T+I F+ + +KI Sbjct: 47 AYAYDIKVFLEFLLNENPSIKNTYSKITDIPLSVLENLSVTDIEEFMEYLKYRESEGKKI 106 Query: 84 GDR--SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL-VDN 140 ++ ++KR +S +KS KY + + E N+ + LP+ L+ K+ + L +D Sbjct: 107 SNKENAIKRKVSTLKSVFKYFYRVEKINE-------NIMERVQLPK-LHSKEIIRLDIDE 158 Query: 141 VLLHTSHETKW-------------IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 V + K R+ A+L LL G G+R+SE + L ++ + Sbjct: 159 VAMMIDEAEKGEGLSDRQKAYHEKTKVRDVALLSLLLGTGIRVSECVGLDISDVDFKNNG 218 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRY 246 + I KG K V V +A+ Y D L + + F ++ K ++ + Sbjct: 219 ILIHRKGGKEVTVYFSDEVSEALQNYLDERVLILEESGHEGAFFLSMQNKRMSVRSVENL 278 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 +++ R + T H LR ++ T+L GD+ + +LGH ++TT+ Sbjct: 279 VKKYARIISPLKKITPHKLRSTYGTNLYKETGDIYLVADVLGHSDVNTTK 328 >gi|255012874|ref|ZP_05285000.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7] Length = 69 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 46/65 (70%) Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ + + HT RHSFATHLL G +LR+IQ +LGH +++TT+IYT+++ + ++E + Sbjct: 3 GIHKNVSPHTFRHSFATHLLEGGANLRAIQEMLGHEKITTTEIYTHIDREFLRKEILEHH 62 Query: 315 DQTHP 319 ++ P Sbjct: 63 PRSRP 67 >gi|119491191|ref|ZP_01623288.1| recombinase [Lyngbya sp. PCC 8106] gi|119453532|gb|EAW34693.1| recombinase [Lyngbya sp. PCC 8106] Length = 345 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 73/286 (25%), Positives = 130/286 (45%), Gaps = 28/286 (9%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 TL +Y+ RQ + FL + + ++ I + + R ++ ++ K +LK LS Sbjct: 42 TLITYK---RQLIQFLDWCDQRQLHPAEINKNDIKKYRRWMIDKKGFKPATIALK--LSV 96 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 ++ F + ++ + T + ++ K+ + + +A + V+ + + A Sbjct: 97 VRRFYQAAMEKGLLTVNPATGVKAPKEKHDPAEKITYLEA-SEVEQLFATIPDDGSLKSA 155 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMD-----DQSTLRIQGKGDKIRIVPLLPSVRKA 209 R+ A+L +L G R E L NI D +R++GK + IRIVPL P + + Sbjct: 156 RDKALLAILTLEGPRTVE---LHRANICDIVRQGKNWGIRVEGKRN-IRIVPLTPEIAQL 211 Query: 210 ILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR----------QLRRYLGLPL 258 + Y + + L PLF + + + +R IR QL++ G L Sbjct: 212 LRVYLERREAAEGQLKPSSPLFVAVGNRAGGKRISRRGIRLIVDGYLKEAQLKQTPGRTL 271 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 ST H+LRH+ T L +G +LR +Q +LGH TT IY +V + Sbjct: 272 ST--HSLRHTAGTLALRSGAELRQVQDLLGHADPRTTCIYAHVGDR 315 >gi|167946419|ref|ZP_02533493.1| tyrosine recombinase XerD [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 71 Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 40/55 (72%) Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 I++ R + + HTLRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V Sbjct: 1 IKRHARQADIDKPISPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHV 55 >gi|319425166|gb|ADV53240.1| integrase family protein [Shewanella putrefaciens 200] Length = 311 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 62/242 (25%), Positives = 109/242 (45%), Gaps = 28/242 (11%) Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY---LKKRKITTESNILNMRNLKKSNSLP 126 +IRA ++ + RS+ R++ IK+ +K + K ++ +N+ + +K Sbjct: 54 QIRAMMTH---AQWSARSINRAMIAIKNIVKVAALMNKADLSQVANLQTINQVKHGEHQG 110 Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 L+ +Q V VL + + RN I L G GLR SE +L + + Sbjct: 111 TPLSTEQ----VTAVLDYCKTQKGTFATRNLLIFSLFLGTGLRRSELSALMLSDYDANLH 166 Query: 187 TLRIQ-GKGDKIRIVPLLPSVRKAILEY---------YDLCPFDLNLNIQLPLFRGIRGK 236 TL + GKG+K R + L V + +L + Y +C L ++L + Sbjct: 167 TLTVAAGKGNKSRTLFLPEWVEQNLLAWLKLRQRQQGYLVCKSTLTGKLKL-------SE 219 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 P +P R +++ LG+ + + H LR +F T LL D+ +++ + GH +STT Sbjct: 220 PTSPTALYRLVKETLYELGVD-NVSPHDLRRTFITRLLEQNVDINTVRQMAGHADISTTT 278 Query: 297 IY 298 IY Sbjct: 279 IY 280 >gi|324323949|gb|ADY24992.1| integrase family protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 296 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 104/237 (43%), Gaps = 40/237 (16%) Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLV 138 +K+ ++ + ++ IK + YL + +ILN +K+ P A + L Sbjct: 63 VEKLAPATINKRVAAIKVYWSYL----VQAGYSILNPTIKVKRKRISPLAQAPRWLSRLE 118 Query: 139 DNVLLHTSHETK--WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGD 195 + LH H+ K W RN AI+ ++ GLRISE +SL ++I + T+ I GKG Sbjct: 119 QDKFLHQIHKEKHVWKKTRNLAIVQIMLQAGLRISEVVSLDIEDIDLKRRTITVISGKGG 178 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF------QRYIRQ 249 K RI + +L L + + G+RG+ +F R RQ Sbjct: 179 KNRIALM-----------------NLELMKTVENWLGVRGELSQVALFLSARHSTRITRQ 221 Query: 250 LRRYL--------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 YL GL +AH+LRHSF +L+ L+ I + GH L TT+ Y Sbjct: 222 GIHYLIKNYLHSIGLT-DYSAHSLRHSFCRNLVDANQPLQIIAQLAGHESLETTRRY 277 >gi|317495237|ref|ZP_07953607.1| phage integrase [Gemella moribillum M424] gi|316914659|gb|EFV36135.1| phage integrase [Gemella moribillum M424] Length = 350 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 5/152 (3%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213 AR+ AIL L G+R++E +L ++I S + + KG+K+ V + S + I EY Sbjct: 192 ARDLAILTLFLKSGIRVNELANLKVKDIDFRNSEINVIRKGNKVDTVIITKSALERISEY 251 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 + PF L + + + G L+ Q+ + + +P+S H LRHS+ T L Sbjct: 252 FQSLPFSLKREDFVFVTKNKTG--LSIRAIQKLVMKYTDAFNVPMS--PHKLRHSYGTKL 307 Query: 274 -LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 L G++ I + +GH T+ +Y N + K Sbjct: 308 ALKTNGNIPIIMTQMGHSNSDTSMLYINESKK 339 >gi|300723961|ref|YP_003713274.1| integrase [Xenorhabdus nematophila ATCC 19061] gi|297630491|emb|CBJ91156.1| Integrase [Xenorhabdus nematophila ATCC 19061] Length = 337 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 20/139 (14%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221 L G R EA L +N++ ++ T + K K R +P+ V K + FD+ Sbjct: 187 LCLNTGARWGEANKLRAENMLHNRVTF-TETKNGKHRTIPISDEVMKVVKTKSSGALFDV 245 Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281 N N + + ++ L LP H LRH+FA H + NGG++ Sbjct: 246 NYNSYANILKKVK-------------------LDLPQGQAVHVLRHTFAAHFMMNGGNIL 286 Query: 282 SIQSILGHFRLSTTQIYTN 300 ++Q I+GH + T Y + Sbjct: 287 TLQKIMGHANIQQTMAYAH 305 >gi|255690723|ref|ZP_05414398.1| putative Na+/H+ antiporter NhaA [Bacteroides finegoldii DSM 17565] gi|260623758|gb|EEX46629.1| putative Na+/H+ antiporter NhaA [Bacteroides finegoldii DSM 17565] Length = 536 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 67/249 (26%), Positives = 110/249 (44%), Gaps = 24/249 (9%) Query: 66 LSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK--ITTESNILNMRNLKKSN 123 L+ +I +I K+ +LK L I+ +L+Y ++ IT L + Sbjct: 284 LTLEDIDKYIEYYTINKVQRNTLKEYLCCIRVYLRYAVEKGWCITDLDKALITPKVYSEE 343 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 +LP L + L+ V T +R+ AI LL GLR SE +L +I Sbjct: 344 NLPSFLPWNKVQKLLQTVKEQTGKSA----SRDYAIFMLLAMYGLRCSEVANLKISDIDW 399 Query: 184 DQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY------DLCPFDLNLNIQLPLFRGIRGK 236 + + I+ K + +++PLL +V +AI+ Y D+ L P+ R I Sbjct: 400 RKEQVYIKRAKNCRPQVLPLLHNVGEAIIAYLKQGRPNDIGSDSLFFCTPAPI-RPISCT 458 Query: 237 PLNPGVFQRYIRQLR---RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 + V+ RY++ R+ G H LRHS AT L++ G L+ + +LGH + Sbjct: 459 AIASVVY-RYLKSSEMDVRHKG------PHCLRHSHATFLINEGQTLKDVGDLLGHKSME 511 Query: 294 TTQIYTNVN 302 T+IY V+ Sbjct: 512 ATRIYAKVD 520 >gi|319641219|ref|ZP_07995919.1| integrase [Bacteroides sp. 3_1_40A] gi|124107947|gb|ABM90616.1| integrase [Bacteroides uniformis] gi|145308091|gb|AAR05648.2| integrase [Bacteroides uniformis] gi|317387152|gb|EFV68031.1| integrase [Bacteroides sp. 3_1_40A] Length = 377 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 19/148 (12%) Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR---IVPLLPSVRKAILEYYDLCPFDLN 222 CGLRIS+ + L +++ D+ R+ K + +PL P K + D P D Sbjct: 234 CGLRISDIIKLQWKDVFVDRGQYRLSVSMQKTKEPIYLPLSPEALKWMPARGDKTPDDHV 293 Query: 223 LNIQLPLFRGIRGKPLN--PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280 ++ P I KP G+ +R+ T HT RH+FAT +L+ G DL Sbjct: 294 FDLPSPAMVNILIKPWAKAAGINKRF--------------TFHTARHTFATMMLTLGADL 339 Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGD 308 + +LGH + TQ+Y + ++ D Sbjct: 340 YTTSKLLGHADVKMTQVYAKIINQKKDD 367 >gi|325520789|gb|EGC99801.1| site-specific tyrosine recombinase XerD [Burkholderia sp. TJI49] Length = 70 Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 42/59 (71%), Gaps = 4/59 (6%) Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 + HTLRH+FATHLL++G DLR +Q +LGH +STTQIYT+V + + ++ Q HP Sbjct: 14 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARER----LRTLHAQHHP 68 >gi|188526798|gb|ACD62280.1| IntI1 integrase [uncultured bacterium] Length = 117 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 62/119 (52%), Gaps = 6/119 (5%) Query: 184 DQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242 D T+ + +GKG K R + +LP + F + + P +R + Sbjct: 4 DHGTIIVREGKGSKDRAL-MLPDGH----SWPWFWVFAQHTHSTDPRSGVVRRHHMYDQT 58 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 59 FQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 117 >gi|30908750|gb|AAP37607.1| IntI [uncultured bacterium] Length = 161 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 33/42 (78%) Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + HTLRHSFATHLL G D+R+IQ +LGH L+TT IYT+V Sbjct: 120 ASCHTLRHSFATHLLQTGSDIRTIQDLLGHKELTTTMIYTHV 161 >gi|89147480|gb|ABD62600.1| integrase [uncultured bacterium] Length = 163 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/60 (48%), Positives = 42/60 (70%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 V Q+ + + + G+ + HTLRHSFATHLL +G D+R+IQ++LGH + TT IYT+V Sbjct: 103 VLQKAMLRAVKESGILKKASVHTLRHSFATHLLQDGYDIRTIQALLGHKSVRTTMIYTHV 162 >gi|255008144|ref|ZP_05280270.1| tyrosine type site-specific recombinase [Bacteroides fragilis 3_1_12] Length = 359 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 61/139 (43%), Gaps = 17/139 (12%) Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR---IVPLLPSVRKAILEYYDLCPFDLN 222 CGLRIS+ + L +N+ D R+ K + +PL K + E D D Sbjct: 218 CGLRISDIVGLKWKNVFVDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPEREDKAADDPV 277 Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282 N+ P +Y+R G+ T HT RH+FAT +L+ G DL + Sbjct: 278 FNL--------------PSNINQYLRPWAEAAGITKRFTFHTARHTFATMMLTLGADLYT 323 Query: 283 IQSILGHFRLSTTQIYTNV 301 + +LGH + TQ+Y + Sbjct: 324 VSKLLGHTSVRMTQVYAKI 342 >gi|288870073|ref|ZP_06112814.2| integrase/recombinase, phage integrase family [Clostridium hathewayi DSM 13479] gi|288868544|gb|EFD00843.1| integrase/recombinase, phage integrase family [Clostridium hathewayi DSM 13479] Length = 376 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 77/164 (46%), Gaps = 9/164 (5%) Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 T + R+ A++ LY G+R+SE +SL +I + L + GKG K R L + Sbjct: 206 TSCSELRDRALVEFLYSTGVRVSELVSLNVGDIEMGKQELIVYGKGSKERKTYLTDGAKF 265 Query: 209 AILEYYDLCPFDLNLNIQ----LPLFRGI---RGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 + Y + + ++ PLF + G+ GV Q +RQL R G+ Sbjct: 266 YLRRYLRTRCENEGMTMEELQGRPLFATLDRPHGRLTVAGV-QYMLRQLGRRAGVE-GVH 323 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 H R + AT LLS G + ++ LGH +L TT IY V +++ Sbjct: 324 PHRFRRTIATDLLSRGMPIEQVKEFLGHEKLDTTMIYCTVKTES 367 >gi|91215321|ref|ZP_01252293.1| putative tyrosine recombinase [Psychroflexus torquis ATCC 700755] gi|91186926|gb|EAS73297.1| putative tyrosine recombinase [Psychroflexus torquis ATCC 700755] Length = 124 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/75 (42%), Positives = 42/75 (56%) Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288 LF G RG + +++ + + T H LRHSFATHLL G DLR IQ +LG Sbjct: 39 LFEGQRGGKYSGQAVVNVVKKAAFKAKIRIPVTPHMLRHSFATHLLEAGVDLRQIQVLLG 98 Query: 289 HFRLSTTQIYTNVNS 303 H TT+IYT+V + Sbjct: 99 HQSTKTTEIYTHVAT 113 >gi|126668752|ref|ZP_01739701.1| putative integrase [Marinobacter sp. ELB17] gi|126626789|gb|EAZ97437.1| putative integrase [Marinobacter sp. ELB17] Length = 332 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 71/294 (24%), Positives = 124/294 (42%), Gaps = 22/294 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 ++ L +R +S T+ SY R L+F + + + + T + AF+ Sbjct: 14 FIDRLMRQRHVSANTIASYRDTFRLPLVFTQKQLGKPPSSLNLEDIDATLVSAFLEDLEV 73 Query: 81 QK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + I R+ L+ I+SF +++ + + I ++ ++P +++ + + Sbjct: 74 NRSISARTRNLRLTAIRSFFRFVSYEEPAHSAQI------QRVLAVPDKRQDRRIVHFLA 127 Query: 140 ----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRIQGKG 194 LL ++ WI R+ +L L GLR+SE L + ++ + + GKG Sbjct: 128 RPEIEALLAAPDQSTWIGRRDHTLLLLAVQTGLRLSELTGLDRASVVLGSGAHVHCLGKG 187 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI---RQLR 251 K R PL +V +AI E+ P + LF +G+ L+ Q + + Sbjct: 188 RKERCTPLTRTVSRAIQEWLKE-PARCDSKA---LFSTRQGRRLSADAVQYLVANYADIT 243 Query: 252 RYLGLPLS---TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 R L T H LRHS A LL G D I LGH + TTQ+Y + + Sbjct: 244 RQHCPSLKQKRITPHVLRHSAAMELLQAGVDCSVIALWLGHESVETTQVYLHAH 297 >gi|218129441|ref|ZP_03458245.1| hypothetical protein BACEGG_01018 [Bacteroides eggerthii DSM 20697] gi|254881363|ref|ZP_05254073.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA] gi|313145864|ref|ZP_07808057.1| integrase [Bacteroides fragilis 3_1_12] gi|317476187|ref|ZP_07935438.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|217988171|gb|EEC54494.1| hypothetical protein BACEGG_01018 [Bacteroides eggerthii DSM 20697] gi|254834156|gb|EET14465.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA] gi|313134631|gb|EFR51991.1| integrase [Bacteroides fragilis 3_1_12] gi|316907598|gb|EFV29301.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 376 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 61/139 (43%), Gaps = 17/139 (12%) Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR---IVPLLPSVRKAILEYYDLCPFDLN 222 CGLRIS+ + L +N+ D R+ K + +PL K + E D D Sbjct: 235 CGLRISDIVGLKWKNVFVDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPEREDKAADDPV 294 Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282 N+ P +Y+R G+ T HT RH+FAT +L+ G DL + Sbjct: 295 FNL--------------PSNINQYLRPWAEAAGITKRFTFHTARHTFATMMLTLGADLYT 340 Query: 283 IQSILGHFRLSTTQIYTNV 301 + +LGH + TQ+Y + Sbjct: 341 VSKLLGHTSVRMTQVYAKI 359 >gi|198276324|ref|ZP_03208855.1| hypothetical protein BACPLE_02519 [Bacteroides plebeius DSM 17135] gi|198270766|gb|EDY95036.1| hypothetical protein BACPLE_02519 [Bacteroides plebeius DSM 17135] Length = 376 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 61/139 (43%), Gaps = 17/139 (12%) Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR---IVPLLPSVRKAILEYYDLCPFDLN 222 CGLRIS+ + L +N+ D R+ K + +PL K + E D D Sbjct: 235 CGLRISDIVGLKWKNVFVDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPEREDKAADDPV 294 Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282 N+ P +Y+R G+ T HT RH+FAT +L+ G DL + Sbjct: 295 FNL--------------PSNINQYLRPWAEAAGITKRFTFHTARHTFATMMLTLGADLYT 340 Query: 283 IQSILGHFRLSTTQIYTNV 301 + +LGH + TQ+Y + Sbjct: 341 VSKLLGHTSVRMTQVYAKI 359 >gi|89147574|gb|ABD62646.1| integrase [uncultured bacterium] Length = 163 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 40/61 (65%) Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 G+ Q +++ G+ H+LRHSFATHLLS G D+R++Q LGH +STT IYT+ Sbjct: 102 GILQTALKRAVDAAGIVKRANCHSLRHSFATHLLSRGYDIRTVQEPLGHKDVSTTMIYTH 161 Query: 301 V 301 V Sbjct: 162 V 162 >gi|238791280|ref|ZP_04634919.1| Integrase [Yersinia intermedia ATCC 29909] gi|238729413|gb|EEQ20928.1| Integrase [Yersinia intermedia ATCC 29909] Length = 291 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 75/156 (48%), Gaps = 8/156 (5%) Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 SH+ R++AIL L G GLR+ E + L + + +R QGKG K R + + P+ Sbjct: 123 SHQEPARRCRDAAILLTLCGAGLRVGELVKLQQDDYAEGVLVVR-QGKGRKYREIHVAPA 181 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST---TA 262 V KA+ + + L ++ +R G P + + + + L + S T Sbjct: 182 VDKALTAWLAMSREGDALFTKI--YRS--GLPASTALTTAGVTAILEQLRITASVAEFTP 237 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 H LR +F T LL G D+ +++ + GH +STT Y Sbjct: 238 HDLRRTFITQLLEQGADINTVRQLAGHSDISTTARY 273 >gi|327183903|gb|AEA32350.1| phage integrase family protein [Lactobacillus amylovorus GRL 1118] Length = 322 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 126/293 (43%), Gaps = 39/293 (13%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF-ISKRR 79 +L+ +IE G S+ T++ Y+ Q L + + IR+++ ++R + + ++ Sbjct: 51 FLEAKKIE-GCSERTIKYYKVTVEQLL---------RKVLDPIRKVTTEQMREYLVDYQK 100 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 G ++ I SF +L++ E IL S R +++ +A LV Sbjct: 101 INNCGKTTIDNVRRNISSFFSWLEE-----EDYILK--------SPMRRIHKIRAEKLVK 147 Query: 140 NVLLHTSHET--KWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 NV+ E D R+ A++ LLY G+R+ E + L +I + + GKGDK Sbjct: 148 NVITDEDIERLRDGCDCLRDVAMIDLLYSTGIRVGELVRLNRSDINFSERECVVFGKGDK 207 Query: 197 IRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 R V + ++ Y D P L +++ P R L + +RQL R Sbjct: 208 ERRVYFDAKSKIHLINYLKSRTDANPA-LFVSLDRPYSR------LKISGVEIRLRQLGR 260 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 L L H R S AT + G + +Q ILGH ++ TT Y VN N Sbjct: 261 KLNLD-RVHPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVNQNN 312 >gi|89147506|gb|ABD62613.1| integrase [uncultured bacterium] Length = 163 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 40/59 (67%) Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 Q+ ++ R +G+ HT+RHS+ATHLL NG ++R +Q ++GH + TT+IYT+V Sbjct: 104 LQKAVKTAVRQVGIAKRVGCHTMRHSYATHLLENGTNIRIVQDLMGHKDVKTTEIYTHV 162 >gi|163782181|ref|ZP_02177180.1| hypothetical protein HG1285_18649 [Hydrogenivirga sp. 128-5-R1-1] gi|159882713|gb|EDP76218.1| hypothetical protein HG1285_18649 [Hydrogenivirga sp. 128-5-R1-1] Length = 288 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 70/296 (23%), Positives = 127/296 (42%), Gaps = 57/296 (19%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W +NLE R ++ T ++Y + F+ + EE + + + + Y + + Sbjct: 7 WKRNLE--RTKNQRTTEAYVRHIKNFIDTVNIGEEELLKVSSAQIFKYVD---------S 55 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRK-------ITTESNILNMR---NLKKSNSLPRALN 130 +G SL +LS +K F K+L +R+ E I +R N KK + P+AL Sbjct: 56 TDLGPTSLLANLSALKHFFKFLLRREYIDRDRFTDIEQAIEELREELNAKKRPTYPKALT 115 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-- 188 +++ VDN+ R I L G+R+ E +L + D+S + Sbjct: 116 KEE----VDNIFNAVK------GKRYEKIYSLFLYSGIRLGEFENLDKSSFYLDKSGILW 165 Query: 189 -RIQ---GKGDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLN 239 R++ K +K R+ P+L R D + ++ N ++ Sbjct: 166 IRLEPHMTKRNKGRLAPVLAQDRDETYRITDRILKWIENYEENFRVK------------- 212 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 GV Q Y +L + LG+P S H+ RH++ T+L+++G + ++ GH + TT Sbjct: 213 RGVLQVYTDRLSKRLGIPFS--VHSFRHTYITNLVNSGFPVEVVKEFAGHSNIKTT 266 >gi|89147534|gb|ABD62627.1| integrase [uncultured bacterium] Length = 163 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 40/61 (65%) Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 G+ Q +++ G+ H+LRHSFATHLL G D+R++Q +LGH +STT IYT+ Sbjct: 102 GILQSALKRAVDATGIVKRANCHSLRHSFATHLLKRGYDIRTVQELLGHKDVSTTMIYTH 161 Query: 301 V 301 V Sbjct: 162 V 162 >gi|89147659|gb|ABD62688.1| integrase [uncultured bacterium] Length = 163 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 43/69 (62%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 +R ++ V Q+ ++ +P + HT RHSFATHLL +G D+R++Q +LGH + Sbjct: 94 LRRHHVDESVLQKAVKAAVLSSKIPKHASCHTFRHSFATHLLESGYDIRTVQELLGHRDV 153 Query: 293 STTQIYTNV 301 TT IYT+V Sbjct: 154 RTTMIYTHV 162 >gi|89147478|gb|ABD62599.1| integrase [uncultured bacterium] Length = 163 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/59 (47%), Positives = 40/59 (67%) Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 QR +++ + + + HTLRHSFATHLL NG D+R++Q +LGH + TT IYT+V Sbjct: 104 LQRTVKKALEKARINKAGSCHTLRHSFATHLLENGYDIRTVQELLGHKDVKTTMIYTHV 162 >gi|326385291|ref|ZP_08206951.1| phage family integrase/recombinase protein [Gordonia neofelifaecis NRRL B-59395] gi|326195982|gb|EGD53196.1| phage family integrase/recombinase protein [Gordonia neofelifaecis NRRL B-59395] Length = 269 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 19/149 (12%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVPLLPSVRKAILE 212 R +L L GLR +E ++ +++ D + LR+ GKG + R+VP+ + + + + Sbjct: 119 RERLMLALAATGGLRRAEIAAVRGEHVERGFDGAQLRVLGKGGRERLVPISDELAEQLEQ 178 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 F RG L P + I +L LP T HTLRH FA+ Sbjct: 179 RRGYA------------FPSPRGGHLTPAHVGKLIARL-----LPPGWTTHTLRHRFASA 221 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 D+R++Q +LGH ++TTQIYT + Sbjct: 222 AYRADRDIRAVQELLGHASVATTQIYTAL 250 >gi|296506648|ref|YP_003667882.1| Integrase-recombinase [Bacillus thuringiensis BMB171] gi|296327235|gb|ADH10162.1| Integrase-recombinase [Bacillus thuringiensis BMB171] Length = 390 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 68/153 (44%), Gaps = 10/153 (6%) Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 N IL L G RI E + +++ D + L++ GKGDK+R + + + + I E Sbjct: 218 NYTILLALASTGARIQELCTARVKDLHYDGKYWLKVTGKGDKVRELFIPEHLFQCISEMR 277 Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266 F LN + P+F RG NP + + + L TAHT R Sbjct: 278 RRRGFQTVLNCGDESPVFINQRGNFYNPKTLSNQVTDMIKKTNLDFLKYRENPVTAHTFR 337 Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298 H+FA + G DL + LGH + TT+IY Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370 >gi|229119225|ref|ZP_04248533.1| Integrase-recombinase [Bacillus cereus Rock1-3] gi|228664222|gb|EEL19755.1| Integrase-recombinase [Bacillus cereus Rock1-3] Length = 390 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 10/153 (6%) Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 N IL L G RI E + +++ D + L++ GKGDK+R + + + + I E Sbjct: 218 NYTILLALASTGARIQELCTARVKDLHYDGKYWLKVTGKGDKVRELFIPEHLFQCISEMR 277 Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266 F LN + P+F RG NP + + + L + TAHT R Sbjct: 278 RRRGFQTVLNRGDESPVFINQRGNFYNPKTLSNQVTDMIKKTNLDFLKYRENTVTAHTFR 337 Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298 H+FA + G DL + LGH + TT+IY Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370 >gi|298528009|ref|ZP_07015413.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298511661|gb|EFI35563.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 390 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 57/218 (26%), Positives = 101/218 (46%), Gaps = 20/218 (9%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S+ R ++ +K ++ +I ++ N R L+ + + R LN+++ L++ + S Sbjct: 165 SVNRYMALVKYIFNLAERWEIIDKAPTRNARKLEDNGARERYLNQEEVYRLLEALNSCKS 224 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLL 203 ++ L G R +EA LT Q + ++ + + K K + VPL Sbjct: 225 QVV-------PDLIEFLLLTGARKTEAAELTWQEVDMERGIWELPAQRNKAGKPKTVPLS 277 Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 + K + D + N + GKPL F ++R+ G+P S H Sbjct: 278 EAAIKVLKRRADNGSRWVFPNPET-------GKPLR--HFHNTWDRIRKQAGIP-SARLH 327 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 LRHSFA+ L+++G L +Q +LGH +LSTTQ Y ++ Sbjct: 328 DLRHSFASFLVNSGRSLYEVQKLLGHSQLSTTQRYAHL 365 >gi|89147492|gb|ABD62606.1| integrase [uncultured bacterium] Length = 163 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/59 (50%), Positives = 39/59 (66%) Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 QR I+ R + + HTLRHSFATHLL NG D+R++Q +LG +STT IYT+V Sbjct: 104 IQRAIKMALRKADIIKPASTHTLRHSFATHLLENGYDIRTVQELLGRKDVSTTMIYTHV 162 >gi|25169070|emb|CAD47906.1| putative transposase [Arthrobacter nicotinovorans] Length = 368 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 57/225 (25%), Positives = 100/225 (44%), Gaps = 27/225 (12%) Query: 93 SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152 +G + FL +L + I+ +R K+ LP L A ++D Sbjct: 143 TGWRPFLAHLAGDR-PQRRRIVKLREPKR---LPTVLPAATAQAVLDAC----------T 188 Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---------KGDKIRIVPLL 203 R+ + LL+ G+RI EAL L ++I + L I+ K R +P+ Sbjct: 189 RLRDRFLFVLLWESGIRIGEALGLRHEDIAVAEGELTIRRRVNANRARAKSVSPRTIPIG 248 Query: 204 PSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 V + +Y DL+ + + + L+ G RG+P+ +++LRR G+ Sbjct: 249 ADVVRLYGDYLHEEYGDLDSDYVFVNLWAGPRGRPMGYAAVYDLVKRLRRDTGVDFD--P 306 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNG 306 H RH++AT LL G + I S+LGH ++TT +Y ++ ++ Sbjct: 307 HWFRHTYATRLLRAGTPIEVISSLLGHASVATTIDVYGHLTVEDA 351 >gi|224807|prf||1202257C gene tnpA Length = 361 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 99/217 (45%), Gaps = 37/217 (17%) Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 K FL ++ K + + N+L +R KK R L K+ ++D HT Sbjct: 139 FKGFLHHVNKGRY--QKNVLKLRVKKKQ---IRTLRSKEVKQIIDAC--HTK-------- 183 Query: 155 RNSAILYLLYGCGLRISEALSL--------------TPQNIMDDQSTLRIQGKGDKIRIV 200 R+ IL L+Y GLRI E LSL TP+++ +++ ++++ K I + Sbjct: 184 RDKLILMLMYEGGLRIGEVLSLRLEDIVTWDNQIHLTPRDVNVNEAYIKLR-KERTIHVS 242 Query: 201 PLLPSVRKA--ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 L S+ I EY + D + + L G GKPL +R++ + G+ Sbjct: 243 KELMSLYTDYLIYEYSEELEHDY---VFISLKEGYFGKPLKYQSVLDLVRRIVKRTGIEF 299 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 T+H LRH+ AT L+ G D+ +Q LGH + TT Sbjct: 300 --TSHMLRHTHATQLIREGWDVAFVQKRLGHAHVQTT 334 >gi|294101938|ref|YP_003553796.1| integrase family protein [Aminobacterium colombiense DSM 12261] gi|293616918|gb|ADE57072.1| integrase family protein [Aminobacterium colombiense DSM 12261] Length = 311 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 8/165 (4%) Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 V LL ++ + R+ A+L L G+R EALSL +++ + ++ + K Sbjct: 120 VVKALLALPDQSTYTGLRSYALLLLSLDTGIRPREALSLRVEDVSIPARVVVVRAETAKT 179 Query: 198 RI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 R+ +P+ +AI++ + P + PLF G+PL + ++ + Sbjct: 180 RVQRTLPISDQTAQAIMKLVSIRPKEWR---NAPLFCSRDGQPLRVNSWYHTVKGYGEKI 236 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 G + T ++LRH FA + L N G+ ++Q I+GH L TT+IY Sbjct: 237 GADI--TPYSLRHLFALYFLRNNGNTFALQRIMGHDNLDTTKIYV 279 >gi|89147632|gb|ABD62675.1| integrase [uncultured bacterium] Length = 163 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 42/64 (65%) Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L+ Q+ +++ R + + HTLRHSFATHLL NG D+R++Q +LGH + TT I Sbjct: 99 LSDQAVQKAMKKAMRTAKIFKHGSCHTLRHSFATHLLENGYDIRTVQELLGHKDVRTTMI 158 Query: 298 YTNV 301 YT+V Sbjct: 159 YTHV 162 >gi|222151103|ref|YP_002560257.1| hypothetical protein MCCL_0854 [Macrococcus caseolyticus JCSC5402] gi|222120226|dbj|BAH17561.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 339 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 5/163 (3%) Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIR 198 N LL++ ++ + D R +++ RI E L++ +I D +S K + R Sbjct: 147 NKLLNSLDKSYYTDFRMFTAIHVFLDTFGRIDEVLNIKITDIDFDKRSIYFPNTKNNDGR 206 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 V +K ++E D D N + +F + G F+ +++ + + Sbjct: 207 YVMFSLKTKKLLVELIDEMK-DYNNDF---VFLAVDGGKFTNQAFRNQLKKYCKEYNIKT 262 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T H RH+ + L NGG++R +Q ILGH +L+TT+IY +V Sbjct: 263 NITPHMFRHTASMLFLENGGNIRVLQKILGHKKLATTEIYAHV 305 >gi|188026429|ref|ZP_02997898.1| hypothetical protein PROSTU_04137 [Providencia stuartii ATCC 25827] gi|188019828|gb|EDU57868.1| hypothetical protein PROSTU_04137 [Providencia stuartii ATCC 25827] Length = 643 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 92/185 (49%), Gaps = 11/185 (5%) Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA--LSLTPQNI 181 SLP++L+ + LL++ +T I R A++ GLRI E LSL + Sbjct: 125 SLPKSLSTDEI-----EQLLNSLGQTDPIGLRADAMVRCALDLGLRIGEIARLSLDDIDW 179 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNP 240 + TLR + KG + ++PL + AI Y + P L+ + + R +P++ Sbjct: 180 VSGTITLR-RTKGRRDDVMPLPVTTGNAIAAYLQNGRPKTLHREV-FASHKTPRERPISR 237 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 V IRQ+ GL T+AH LRH+ A LL+ G ++ I IL H L+ T+IY Sbjct: 238 SVVSIAIRQVYTRAGLQY-TSAHLLRHTMANRLLATGASIKDIADILRHRSLNATRIYAK 296 Query: 301 VNSKN 305 ++S+N Sbjct: 297 LDSRN 301 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 50/156 (32%), Positives = 68/156 (43%), Gaps = 19/156 (12%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDL---- 216 LL GLRISEALSL ++ +S L I + K K R + L PS KA+ +Y + Sbjct: 463 LLASTGLRISEALSLRISDVDLRRSILIIRRTKFGKSRSIVLHPSTSKALHQYLNQRKLT 522 Query: 217 -CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT-----LRHSFA 270 D + + L + GK L + R LRR LG T H LRHSF Sbjct: 523 RAASDEDAYFFIGLRADVLGKRLGGQQVCQVFRALRRELGWVNRGTHHAPRIHDLRHSFV 582 Query: 271 TH---LLSNGG-----DLRSIQSILGHFRLSTTQIY 298 L G ++ S+ + LGH ++ T Y Sbjct: 583 VRRIILWQQQGIDVAHEMLSLSTYLGHASIAETYWY 618 >gi|149924555|ref|ZP_01912912.1| Phage integrase [Plesiocystis pacifica SIR-1] gi|149814565|gb|EDM74148.1| Phage integrase [Plesiocystis pacifica SIR-1] Length = 374 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 20/160 (12%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ----------GKGDKIRIVPL 202 DA + AI+ L GLR E L ++ ++ L ++ K DKIR++P+ Sbjct: 200 DATDLAIVLLGGDAGLRAGEIRGLHWNSLDFQRNRLTVEWAEWRGQITTPKHDKIRVLPM 259 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 ++KA+ + P D L + P G PL G+ + +R++ + GL Sbjct: 260 TQRLQKALRQ----LPRDRKLVLAQP-----SGDPLTVGLLSKRLRRVEKRAGL-RDKGP 309 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 HTLRH+F +HL G R IQ + GH L TT+ Y +++ Sbjct: 310 HTLRHTFCSHLAMRGIPARVIQQLAGHSSLVTTERYMHLS 349 >gi|294340302|emb|CAZ88679.1| putative Phage integrase [Thiomonas sp. 3As] Length = 410 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 76/151 (50%), Gaps = 5/151 (3%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEY 213 R A++ + GLR SEA++L +I T+RI G K + ++PL AI +Y Sbjct: 246 RCYALVRCVVDLGLRSSEAIALELDDIDWVAGTVRIVGSKSRRADVLPLPQLTGAAIADY 305 Query: 214 Y--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 + P + + + + +P+ V +R +RQ R GLP T H LRH+ A+ Sbjct: 306 VRSERRPQTTSRRVFVRHVAPV-DEPVAADVVRRAVRQAYRRAGLPY-TRVHILRHTLAS 363 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 LL+ GG L+ + +L H L T+ IY V+ Sbjct: 364 RLLNTGGTLKEVADVLRHRELDTSLIYAKVD 394 >gi|148975049|ref|ZP_01812029.1| Integrase [Vibrionales bacterium SWAT-3] gi|145965558|gb|EDK30807.1| Integrase [Vibrionales bacterium SWAT-3] Length = 373 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 21/138 (15%) Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224 G RISEAL+LT + + + T + KG K R VP+ P++ IL+ Sbjct: 238 ATGARISEALTLTRSQVAEFKLTY-TETKGKKNRSVPISPALYHEILDI----------- 285 Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRS 282 + + ++ R ++R L +P H LRH+FA+H + N GD+ Sbjct: 286 -------AVSDHKIFDTTYKDAWRYIKRALPNHVPSGQATHVLRHTFASHFMMNKGDILV 338 Query: 283 IQSILGHFRLSTTQIYTN 300 +Q ILGH ++ T Y++ Sbjct: 339 LQRILGHTKIEQTMAYSH 356 >gi|60681287|ref|YP_211431.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343] gi|60492721|emb|CAH07494.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343] Length = 431 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 71/151 (47%), Gaps = 20/151 (13%) Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYY 214 L+GC GL + +LT I MD I + K R+ VPL+ ++ I Y Sbjct: 252 FLFGCFTGLSYIDIKTLTHDKIQRMDFDGEEWIITRRTKTRVSSNVPLMEIAKELIERYK 311 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL- 273 L DL I P N V R+++Q+ + G+ H RH+FAT + Sbjct: 312 GLAGGDLVFPI-----------PSNS-VCNRHLKQIAKACGIHKEIGFHLSRHTFATTVY 359 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 L NGG + ++ ILGH +STTQIY V ++ Sbjct: 360 LCNGGTIEALSKILGHKHISTTQIYAEVTNR 390 >gi|15923046|ref|NP_370580.1| transposase A [Staphylococcus aureus subsp. aureus Mu50] gi|15924649|ref|NP_372183.1| transposase A [Staphylococcus aureus subsp. aureus Mu50] gi|15925759|ref|NP_373292.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315] gi|15926488|ref|NP_374021.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315] gi|15927238|ref|NP_374771.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315] gi|15927727|ref|NP_375260.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp. aureus N315] gi|15928181|ref|NP_375714.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp. aureus N315] gi|49482302|ref|YP_039526.1| transposase A 1 [Staphylococcus aureus subsp. aureus MRSA252] gi|49483903|ref|YP_041127.1| transposase A 2 [Staphylococcus aureus subsp. aureus MRSA252] gi|57865838|ref|YP_190048.1| transposase A [Staphylococcus epidermidis RP62A] gi|57867121|ref|YP_188798.1| Tn554, transposase A [Staphylococcus epidermidis RP62A] gi|57867260|ref|YP_188919.1| Tn554, transposase A [Staphylococcus epidermidis RP62A] gi|148266488|ref|YP_001245431.1| phage integrase family protein [Staphylococcus aureus subsp. aureus JH9] gi|148268140|ref|YP_001247083.1| phage integrase family protein [Staphylococcus aureus subsp. aureus JH9] gi|150392521|ref|YP_001315196.1| phage integrase family protein [Staphylococcus aureus subsp. aureus JH1] gi|150394207|ref|YP_001316882.1| phage integrase family protein [Staphylococcus aureus subsp. aureus JH1] gi|156978386|ref|YP_001440645.1| transposase A [Staphylococcus aureus subsp. aureus Mu3] gi|156979977|ref|YP_001442236.1| transposase A [Staphylococcus aureus subsp. aureus Mu3] gi|221141569|ref|ZP_03566062.1| transposase A [Staphylococcus aureus subsp. aureus str. JKD6009] gi|254663984|ref|ZP_05143456.1| transposase A [Staphylococcus aureus subsp. aureus Mu50-omega] gi|255006445|ref|ZP_05145046.2| transposase A [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257428442|ref|ZP_05604840.1| transposase A, tpnA [Staphylococcus aureus subsp. aureus 65-1322] gi|257431611|ref|ZP_05607979.1| tnpA protein [Staphylococcus aureus subsp. aureus 68-397] gi|257793727|ref|ZP_05642706.1| transposase [Staphylococcus aureus A9781] gi|258411264|ref|ZP_05681541.1| transposase [Staphylococcus aureus A9763] gi|258422476|ref|ZP_05685387.1| transposase for transposon [Staphylococcus aureus A9719] gi|258447337|ref|ZP_05695483.1| tnpA protein [Staphylococcus aureus A6300] gi|258448322|ref|ZP_05696447.1| tnpA protein [Staphylococcus aureus A6224] gi|258451924|ref|ZP_05699941.1| tnpA protein [Staphylococcus aureus A5948] gi|258454551|ref|ZP_05702517.1| tnpA protein [Staphylococcus aureus A5937] gi|282929818|ref|ZP_06336961.1| transposase A [Staphylococcus aureus A10102] gi|293503535|ref|ZP_06667382.1| transposase A [Staphylococcus aureus subsp. aureus 58-424] gi|295407732|ref|ZP_06817517.1| transposase A [Staphylococcus aureus A8819] gi|295429348|ref|ZP_06821969.1| transposase A transposon Tn554 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297246795|ref|ZP_06930604.1| transposase A [Staphylococcus aureus A8796] gi|304378957|ref|ZP_07361719.1| transposase A [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|60415970|sp|P0A050|TNPA_STAAM RecName: Full=Transposase A from transposon Tn554 gi|60415971|sp|P0A051|TNPA_STAAN RecName: Full=Transposase A from transposon Tn554 gi|60415972|sp|P0A052|TNPA_STAAU RecName: Full=Transposase A from transposon Tn554 gi|581277|emb|CAA26960.1| tnpA protein [Staphylococcus aureus] gi|5360831|dbj|BAA82201.1| transposaseA [Staphylococcus aureus] gi|13699971|dbj|BAB41270.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315] gi|13700702|dbj|BAB41999.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315] gi|13701456|dbj|BAB42750.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315] gi|13701947|dbj|BAB43239.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp. aureus N315] gi|13702552|dbj|BAB43693.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp. aureus N315] gi|14021043|dbj|BAB47667.1| transposase A(Tn554) [Staphylococcus aureus] gi|14245823|dbj|BAB56218.1| transposase A [Staphylococcus aureus subsp. aureus Mu50] gi|14247431|dbj|BAB57821.1| transposase A [Staphylococcus aureus subsp. aureus Mu50] gi|27529892|dbj|BAC53829.1| transposase A(Tn554) [Staphylococcus aureus] gi|28465874|dbj|BAC57491.1| transposaseA [Staphylococcus aureus] gi|49240431|emb|CAG39082.1| transposase A 1 [Staphylococcus aureus subsp. aureus MRSA252] gi|49242032|emb|CAG40731.1| transposase A 2 [Staphylococcus aureus subsp. aureus MRSA252] gi|57636496|gb|AAW53284.1| transposase A [Staphylococcus epidermidis RP62A] gi|57637779|gb|AAW54567.1| Tn554, transposase A [Staphylococcus epidermidis RP62A] gi|57637918|gb|AAW54706.1| Tn554, transposase A [Staphylococcus epidermidis RP62A] gi|70568188|dbj|BAE06285.1| transposase A for Tn554 [Staphylococcus aureus] gi|147739557|gb|ABQ47855.1| phage integrase family protein [Staphylococcus aureus subsp. aureus JH9] gi|147741209|gb|ABQ49507.1| phage integrase family protein [Staphylococcus aureus subsp. aureus JH9] gi|149944973|gb|ABR50909.1| phage integrase family protein [Staphylococcus aureus subsp. aureus JH1] gi|149946659|gb|ABR52595.1| phage integrase family protein [Staphylococcus aureus subsp. aureus JH1] gi|156720521|dbj|BAF76938.1| transposase A [Staphylococcus aureus subsp. aureus Mu3] gi|156722112|dbj|BAF78529.1| transposase A [Staphylococcus aureus subsp. aureus Mu3] gi|195963185|emb|CAQ43010.1| transposase A [Staphylococcus aureus] gi|221327665|gb|ACM17509.1| transposase A [Staphylococcus aureus] gi|238773853|dbj|BAH66416.1| transposaseA [Staphylococcus aureus] gi|257275283|gb|EEV06770.1| transposase A, tpnA [Staphylococcus aureus subsp. aureus 65-1322] gi|257277665|gb|EEV08349.1| tnpA protein [Staphylococcus aureus subsp. aureus 68-397] gi|257787699|gb|EEV26039.1| transposase [Staphylococcus aureus A9781] gi|257839993|gb|EEV64460.1| transposase [Staphylococcus aureus A9763] gi|257841542|gb|EEV65980.1| transposase for transposon [Staphylococcus aureus A9719] gi|257853863|gb|EEV76820.1| tnpA protein [Staphylococcus aureus A6300] gi|257858417|gb|EEV81295.1| tnpA protein [Staphylococcus aureus A6224] gi|257860407|gb|EEV83238.1| tnpA protein [Staphylococcus aureus A5948] gi|257863278|gb|EEV86040.1| tnpA protein [Staphylococcus aureus A5937] gi|269939560|emb|CBI47921.1| transposase A 1 [Staphylococcus aureus subsp. aureus TW20] gi|269941142|emb|CBI49529.1| transposase C 2 [Staphylococcus aureus subsp. aureus TW20] gi|282167045|gb|ADA81061.1| Transposase A from transposon Tn554 [Staphylococcus aureus] gi|282589025|gb|EFB94130.1| transposase A [Staphylococcus aureus A10102] gi|285815781|gb|ADC36268.1| Transposase A from transposon Tn554 [Staphylococcus aureus 04-02981] gi|285817342|gb|ADC37829.1| Transposase A from transposon Tn554 [Staphylococcus aureus 04-02981] gi|288551790|gb|ADC53386.1| transposase A [Staphylococcus aureus] gi|291095201|gb|EFE25466.1| transposase A [Staphylococcus aureus subsp. aureus 58-424] gi|294967408|gb|EFG43452.1| transposase A [Staphylococcus aureus A8819] gi|295126726|gb|EFG56371.1| transposase A transposon Tn554 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297176346|gb|EFH35621.1| transposase A [Staphylococcus aureus A8796] gi|299758064|dbj|BAJ10039.1| transposase A [Staphylococcus aureus] gi|302750706|gb|ADL64883.1| phage integrase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|302751486|gb|ADL65663.1| phage integrase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304342463|gb|EFM08340.1| transposase A [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312828683|emb|CBX33525.1| phage integrase, N-terminal SAM-like domain protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128350|gb|EFT84362.1| transposase A [Staphylococcus aureus subsp. aureus CGS03] gi|315195563|gb|EFU25950.1| transposase A [Staphylococcus aureus subsp. aureus CGS00] gi|329314333|gb|AEB88746.1| Transposase A from transposon Tn554 [Staphylococcus aureus subsp. aureus T0131] gi|329727407|gb|EGG63863.1| phage integrase, N-terminal SAM domain protein [Staphylococcus aureus subsp. aureus 21172] Length = 361 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 99/217 (45%), Gaps = 37/217 (17%) Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 K FL ++ K + + N+L +R KK R L K+ ++D HT Sbjct: 139 FKGFLHHVNKGRY--QKNVLKLRVKKKQ---IRTLRSKEVKQIIDAC--HTK-------- 183 Query: 155 RNSAILYLLYGCGLRISEALSL--------------TPQNIMDDQSTLRIQGKGDKIRIV 200 R+ IL L+Y GLRI E LSL TP+++ +++ ++++ K I + Sbjct: 184 RDKLILMLMYEGGLRIGEVLSLRLEDIVTWDNQIHLTPRDVNVNEAYIKLR-KERTIHVS 242 Query: 201 PLLPSVRKA--ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 L S+ I EY + D + + L G GKPL +R++ + G+ Sbjct: 243 KELMSLYTDYLIYEYSEELEHDY---VFISLKEGYFGKPLKYQSVLDLVRRIVKRTGIEF 299 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 T+H LRH+ AT L+ G D+ +Q LGH + TT Sbjct: 300 --TSHMLRHTHATQLIREGWDVAFVQKRLGHAHVQTT 334 >gi|257438381|ref|ZP_05614136.1| site-specific recombinase, phage integrase family [Faecalibacterium prausnitzii A2-165] gi|257199212|gb|EEU97496.1| site-specific recombinase, phage integrase family [Faecalibacterium prausnitzii A2-165] Length = 342 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 22/165 (13%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-----KG----------DKI 197 D R + LL G G+R+ E L+L PQ I +D S + I+ KG D I Sbjct: 168 DDRMGLSIRLLLGTGMRMQELLALEPQFIEEDGSVIHIRQAVKVVKGTVSIGSPKSKDSI 227 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 R +P+ +VR ++ D Q G P NP F+ R+ G Sbjct: 228 RDIPVPLNVRPCAIKLRDTTD-------QFIWESPKTGLPCNPTHFRDVFRKSLEEAGDV 280 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 T H+ RH++ + + + G D+++IQSI+GH T+ Y +V Sbjct: 281 RLLTPHSCRHTYVSQMQALGVDIQTIQSIVGHADTEMTEHYLHVQ 325 >gi|295105295|emb|CBL02839.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3] Length = 341 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 22/165 (13%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-----KG----------DKI 197 D R + LL G G+R+ E L+L PQ I +D S + I+ KG D I Sbjct: 167 DDRMGLSIRLLLGTGMRMQELLALEPQFIEEDGSVIHIRQAVKVVKGTVSIGSPKSKDSI 226 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 R +P+ +VR ++ D Q G P NP F+ R+ G Sbjct: 227 RDIPVPLNVRPCAIKLRDTTD-------QFIWESPKTGLPCNPTHFRDVFRKSLEEAGDV 279 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 T H+ RH++ + + + G D+++IQSI+GH T+ Y +V Sbjct: 280 RLLTPHSCRHTYVSQMQALGVDIQTIQSIVGHADTEMTEHYLHVQ 324 >gi|251777699|ref|ZP_04820619.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082014|gb|EES47904.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 313 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 70/152 (46%), Gaps = 6/152 (3%) Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKA 209 + + R+ I+ L G+R+S ++ +I D ST+ I K K IVPL + Sbjct: 136 FTEYRDWVIINFLLSTGVRLSSLANIKIGDIDFDTSTINITHTKNRKALIVPLNNQILTI 195 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 + EY + + LF I GKPL IR G+ +T H RH+F Sbjct: 196 LKEY----LYQRGGDKDEILFCTIWGKPLTRNSLGTAIRHYNNSRGVT-TTGIHRFRHTF 250 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 A + NG ++ ++Q ILGH L TQ Y NV Sbjct: 251 AKKWVLNGNNIVALQKILGHSSLDMTQKYINV 282 >gi|239631499|ref|ZP_04674530.1| site-specific tyrosine recombinase XerS [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239525964|gb|EEQ64965.1| site-specific tyrosine recombinase XerS [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 358 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 70/335 (20%), Positives = 140/335 (41%), Gaps = 64/335 (19%) Query: 31 LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFIS-------- 76 ++ TL Y ++FL +L A + + + + + LS + +AF++ Sbjct: 21 IADSTLYQYLHFYQEFLNWLINSGVTAASSPQTVPLTVLEHLSLRDAQAFMAYLLERPSK 80 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES-------NILNMRNLKKSNSLPRAL 129 +++ RS+ L GIK+ ++L + N+ N LK Sbjct: 81 THHNKRMTRRSVALRLVGIKALYRFLTEESEPHADGEPYFYRNVWNKVKLKTHTETASYR 140 Query: 130 NEK-QALTLVDNVLLHTSHETKWID-------------------ARNSAILYLLYGCGLR 169 N K Q + VD + +W+D RN A++ LL+G G+R Sbjct: 141 NHKLQEMLFVDG---EDAKFLQWLDQSYAQQLQAKPRRYFEATKVRNLAMIALLFGSGVR 197 Query: 170 ISEALSLTPQNIMDDQSTLRIQGKG---DKIRIVPLL-PSVRKAILEYYDLCPFDLNLNI 225 +SE +++ +++ D+ T+++ KG D++ + P V+ + + + + + Sbjct: 198 VSELVNMNLEDLNMDRHTVQVVRKGNFQDRVNFADWIDPYVQAYLTQRAAIIGYQKPTS- 256 Query: 226 QLPLFRGIRGKPLN-------PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278 PLF + G+ +N F+RY R +T H RH+ T++ + Sbjct: 257 --PLFVTVVGQKINRIRQNTIEAFFKRYTTDYGR------PSTPHKARHTLGTNIYTVTK 308 Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 D++ + LG S T +Y N++ K+G + + E+ Sbjct: 309 DVQQVADQLGQTTTSATDLYINLSDKSGKEALREV 343 >gi|237711030|ref|ZP_04541511.1| site-specific recombinase [Bacteroides sp. 9_1_42FAA] gi|229454874|gb|EEO60595.1| site-specific recombinase [Bacteroides sp. 9_1_42FAA] Length = 352 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 16/166 (9%) Query: 143 LHTSHETKWIDARNSAILYLLYGC---GLRISEALSLTPQNIMDDQS----TLRIQGKGD 195 LH E K+ R A+ + C GL ++ L P++I D + + + K + Sbjct: 178 LHAIMEKKFDIPRLEAVRDIFVFCCLSGLAFTDVQHLKPEHITKDINGEWWIRKAREKTN 237 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 + +PLL + I+E Y P L N+ LP+ P N + Y++++ G Sbjct: 238 NVCHIPLL-DIPAMIIEKYRKNPVCLQKNMVLPV-------PSNQRM-NSYLKEIADVCG 288 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T H RHSFA L+N + +I +LGH + TT+IY V Sbjct: 289 ITKKLTTHIARHSFACFALANKVSMETIAKMLGHSDIRTTKIYAKV 334 >gi|227511532|ref|ZP_03941581.1| integrase [Lactobacillus buchneri ATCC 11577] gi|227085177|gb|EEI20489.1| integrase [Lactobacillus buchneri ATCC 11577] Length = 305 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 80/296 (27%), Positives = 140/296 (47%), Gaps = 34/296 (11%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI- 71 +LL+ Q+W+ NL + + K+T + YE RQ ++ LA + + + +L+Y ++ Sbjct: 6 KLLRYFQDWM-NLYKKDAVRKVTYRKYEMTYRQ-IVSLA----PDLRMCELSRLTYQKLL 59 Query: 72 --RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 A +R+T R +K SL I + + + +R T ++ I + K + L Sbjct: 60 NDYAETHERQTVMDFHRHIKSSL--IDALEEGILERDPTRKAII---KGKKPGPHKTKFL 114 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 N+ + ++D++ L W + L+ GLR SEAL++TP + + TL Sbjct: 115 NQHEVQLMLDSLSLDAG--VNW-----DYFILLITKTGLRFSEALAVTPNDFDFARQTLN 167 Query: 190 IQGKGD-KIRIVPLLP-----SVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNP 240 I D K R P S+RK L++ + F L+ P+F +R K N Sbjct: 168 INKTWDYKSRQAGFAPTKNLSSMRKIQLDWQTVIQFSQLTKELSEDKPIF--VRSKVYND 225 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + Y+ +L + G+P+ + H LRH+ A+ LL G + S+ LGH ++TTQ Sbjct: 226 TI-NHYLERLCKKSGIPI-ISVHGLRHTHASLLLYAGVSIASVARRLGHSNMNTTQ 279 >gi|89147357|gb|ABD62539.1| integrase [uncultured bacterium] Length = 167 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 41/64 (64%) Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 ++ QR ++ R + + HT RHSFATHLL NG D+R++Q +LGH +STT I Sbjct: 103 VDESFLQRAVKIAVREARINKPGSCHTFRHSFATHLLENGYDIRTVQELLGHKDVSTTMI 162 Query: 298 YTNV 301 YT+V Sbjct: 163 YTHV 166 >gi|86140615|ref|ZP_01059174.1| tyrosine type site-specific recombinase [Leeuwenhoekiella blandensis MED217] gi|85832557|gb|EAQ51006.1| tyrosine type site-specific recombinase [Leeuwenhoekiella blandensis MED217] Length = 422 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 73/150 (48%), Gaps = 16/150 (10%) Query: 162 LLYGC--GLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRI-VPLLPSVRKAILEYYD 215 L+ C G+ ++ LTP NI DD+ + + R+ VPL+P+ + ++E Y Sbjct: 251 FLFSCYTGISYADLNKLTPNNIWKGEDDKKWIVTNRQKTNTRVKVPLMPTALR-LIEKYR 309 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274 P L G P+ Y++++ GL + T H RH+FAT + L Sbjct: 310 EHP--------LTEVSGTLFPPITNERANLYLKEIAEACGLTKNLTFHMARHTFATTVTL 361 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 SNG + ++ +LGH +++TTQIY V K Sbjct: 362 SNGMPIETVSKLLGHTKIATTQIYARVLDK 391 >gi|89147338|gb|ABD62531.1| integrase [uncultured bacterium] Length = 163 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/61 (49%), Positives = 42/61 (68%), Gaps = 3/61 (4%) Query: 244 QRYIRQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 +R RQL++ + G+ + HTLRHSFATH L G D+R++Q +LGH +STT IYT+ Sbjct: 102 ERLNRQLKKAVVQAGIAKHVSVHTLRHSFATHSLQAGTDIRTVQELLGHSDVSTTMIYTH 161 Query: 301 V 301 V Sbjct: 162 V 162 >gi|295100875|emb|CBK98420.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6] Length = 341 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 22/165 (13%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-----KG----------DKI 197 D R + LL G G+R+ E L+L PQ I +D S + I+ KG D I Sbjct: 167 DDRMGLSIRLLLGTGMRMQELLALEPQFIEEDGSVIHIRQAVKVVKGTVSIGSPKSKDSI 226 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 R +P+ +VR ++ D Q G P NP F+ R+ G Sbjct: 227 RDIPVPLNVRPCAIKLRDTTD-------QFIWESPKTGLPCNPTHFRDVFRKSLEEAGDV 279 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 T H+ RH++ + + + G D+++IQSI+GH T+ Y +V Sbjct: 280 RLLTPHSCRHTYVSQMQALGVDIQTIQSIVGHADTEMTEHYLHVQ 324 >gi|330822190|ref|YP_004351018.1| Phage integrase family protein [Burkholderia gladioli BSR3] gi|327374342|gb|AEA65695.1| Phage integrase family protein [Burkholderia gladioli BSR3] Length = 611 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 97/243 (39%), Gaps = 47/243 (19%) Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166 +T I L+ +LP + + L D W AR A++ L+ Sbjct: 352 VTDPKPIKRATKLQVQRALPIDVWTRVRAELADRSEGFGPQGPDWRVAR--ALVLLMGDA 409 Query: 167 GLRISEALSL--------TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 GLRI EA+++ ++ + LR+ GKG+K RIVPL +A+ E++ Sbjct: 410 GLRIEEAVTVERGGLQWWPAEDEIPATWMLRLVGKGNKERIVPLTEDAVEALREHWQDRG 469 Query: 219 FDLNL----NIQLPLF--------------RGI-------RGKPLNPGVFQRYI-RQLRR 252 DL+ +LPL G+ R P +R + R L R Sbjct: 470 LDLDAPGANADRLPLVSPTVVPPTPAGREKHGVTATGQVTRAAGYTPRAARRVVTRALER 529 Query: 253 YLG-LP----------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 LG LP T+ H RH+F T ++ G + +Q +LGH L TT IY N Sbjct: 530 LLGELPDLEESARRQLAQTSPHAFRHTFGTQSVAAGMAIEVLQQVLGHGSLQTTTIYVNA 589 Query: 302 NSK 304 + Sbjct: 590 EQR 592 >gi|312793729|ref|YP_004026652.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180869|gb|ADQ41039.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 319 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 66/287 (22%), Positives = 120/287 (41%), Gaps = 32/287 (11%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 +G S LT++ YE R AF+ ++L R + + +Q + + Sbjct: 28 QGRSDLTIRDYEIHIR------AFFKRYPDCFNDTQKL-----RKCLIEYLSQPMKPVTY 76 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--LLHTS 146 + +K+FL + + I + I + PR +++ ++ + LL Sbjct: 77 NLRMKNLKAFLNWCVEEGIIPTNPIAKFK--------PRKTDDRIVEIDIETLQKLLQLP 128 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI-----RIVP 201 + R+ A++ L G+R EA SL + D +++ D R++P Sbjct: 129 DRKTFAGLRDYALMLLTLDTGIRPKEAFSLLKDHF--DFKNMQVVIPSDVAKTRVSRVLP 186 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 + P AI + + + +P+F + GKPLN + +R+ + LG+ + Sbjct: 187 ISPVTANAIKKL--ISSRHPQWDDSVPVFCSVTGKPLNRYRWNERMREYSKQLGVKIK-- 242 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 + LRH FA L NGG S+Q I+GH L T+ Y + K+ D Sbjct: 243 PYDLRHMFALLYLKNGGYELSLQKIMGHTTLEMTKKYVHFTQKDLQD 289 >gi|332655467|ref|ZP_08421204.1| integrase/recombinase, phage integrase family [Ruminococcaceae bacterium D16] gi|332515602|gb|EGJ45215.1| integrase/recombinase, phage integrase family [Ruminococcaceae bacterium D16] Length = 327 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 55/236 (23%), Positives = 104/236 (44%), Gaps = 25/236 (10%) Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 + + R++ K+ +++R LS S+ +L+ +S + + +K + + ++ Sbjct: 103 YQTSRKSSKVTIDNIRRILS---SYFSWLEDEDYIVKSPVRRIHKVKTAKVIKETYTDEA 159 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 + DN + R+ A++ LL G+R+ E ++L +I ++ + GK Sbjct: 160 LEIMRDNCC----------NVRDLAMIDLLASSGMRVGEMIALNRDDINFNERECVVFGK 209 Query: 194 GDKIRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 G K RIV + + Y D C L +++ P R L G +R +R+ Sbjct: 210 GSKERIVYFDARTKIHLQNYLESRTDTCSA-LFVSLTAPNDR------LQIGGVERRLRE 262 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 L + L LP H R + AT + G + +Q +LGH ++ TT Y V +N Sbjct: 263 LGKRLNLP-RVHPHKFRRTLATSAIDKGMPIEQVQQLLGHQKIDTTMHYAMVKQQN 317 >gi|298484293|ref|ZP_07002456.1| integrase [Bacteroides sp. D22] gi|298269540|gb|EFI11138.1| integrase [Bacteroides sp. D22] Length = 431 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 72/151 (47%), Gaps = 20/151 (13%) Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYY 214 L+GC GL + +LT I MD I + K R+ VPL+ ++ I Y Sbjct: 252 FLFGCFTGLSYIDIKTLTHDKIQRMDFDGEEWIITRRTKTRVSSNVPLMEIAKELIERYK 311 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL- 273 L DL P+ P N V R+++Q+ + G+ H RH+FAT + Sbjct: 312 GLAGGDL----VFPM-------PSNS-VCNRHLKQIAKACGIHKEIGFHLSRHTFATTIY 359 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 L NGG + ++ ILGH +STTQIY V ++ Sbjct: 360 LCNGGTIEALSKILGHKHISTTQIYAEVTNR 390 >gi|265757008|ref|ZP_06090870.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263233507|gb|EEZ19136.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 420 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 83/300 (27%), Positives = 129/300 (43%), Gaps = 48/300 (16%) Query: 32 SKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90 S +T+ Y+ R+ F+ FY ++ IT +LS I+AF +T+ L R Sbjct: 139 SPVTINRYKNVLRKLETFVPRFYEKDDITFH---ELSPDFIKAFDVFLKTEA----GLCR 191 Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150 + I ++K LKK I NM K+ K D V L T++E + Sbjct: 192 N--TIVRYMKCLKK--------ITNMAIAKEWMRKDPFYGYKMEQDETDPVFL-TNNELQ 240 Query: 151 WIDARNSAILYL-------LYGC--GLRISEALSLTPQNIMDDQS----------TLRIQ 191 I RN I L L+ C GL ++ +L P+++ D + L + Sbjct: 241 AIMNRNFDIPRLELVKDIFLFACFTGLAFADVSTLRPEHLEQDNNGDWWIRKGRVKLERR 300 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 K I VPLLP V AIL+ Y+ P L LP+ + Y++++ Sbjct: 301 RKSSSIANVPLLP-VPLAILKKYESHPICLKQGTCLPVVCNQKA--------NSYLKEIA 351 Query: 252 RYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 + G+ + T H RH+FAT + L+N L+ + ++LGH TQ Y V +N D M Sbjct: 352 DFCGIKKNLTTHAARHTFATTVTLANNVPLQEVSAMLGHASTRMTQHYARVMDRNLKDNM 411 >gi|160945568|ref|ZP_02092794.1| hypothetical protein FAEPRAM212_03097 [Faecalibacterium prausnitzii M21/2] gi|313113644|ref|ZP_07799225.1| site-specific recombinase, phage integrase family [Faecalibacterium cf. prausnitzii KLE1255] gi|158443299|gb|EDP20304.1| hypothetical protein FAEPRAM212_03097 [Faecalibacterium prausnitzii M21/2] gi|310624012|gb|EFQ07386.1| site-specific recombinase, phage integrase family [Faecalibacterium cf. prausnitzii KLE1255] Length = 342 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 22/165 (13%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-----KG----------DKI 197 D R + LL G G+R+ E L+L PQ I +D S + I+ KG D I Sbjct: 168 DDRMGLSIRLLLGTGMRMQELLALEPQFIEEDGSVIHIRQAVKVVKGTVSIGSPKSKDSI 227 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 R +P+ +VR ++ D Q G P NP F+ R+ G Sbjct: 228 RDIPVPLNVRPCAIKLRDTTD-------QFIWESPKTGLPCNPTHFRDVFRKSLEEAGDV 280 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 T H+ RH++ + + + G D+++IQSI+GH T+ Y +V Sbjct: 281 RLLTPHSCRHTYVSQMQALGVDIQTIQSIVGHADTEMTEHYLHVQ 325 >gi|156976230|ref|YP_001447136.1| integrase [Vibrio harveyi ATCC BAA-1116] gi|156527824|gb|ABU72909.1| hypothetical protein VIBHAR_05002 [Vibrio harveyi ATCC BAA-1116] Length = 345 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 70/144 (48%), Gaps = 21/144 (14%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 I + G RISEAL+LT I + + T KG + R VP+ PS+ + IL D+ Sbjct: 204 IAKICLATGARISEALTLTRTQITEFKLTY-TDTKGKRNRSVPISPSLYQEIL---DIAV 259 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSN 276 D ++ N ++ R ++R L +P H LRH+FA+H + N Sbjct: 260 SDHDI--------------FNTS-YKDAWRYIKRALPEHVPNGQATHVLRHTFASHFMMN 304 Query: 277 GGDLRSIQSILGHFRLSTTQIYTN 300 GD+ +Q ILGH ++ T Y++ Sbjct: 305 KGDILVLQRILGHTKIEQTMAYSH 328 >gi|84516489|ref|ZP_01003848.1| hypothetical protein SKA53_07756 [Loktanella vestfoldensis SKA53] gi|84509525|gb|EAQ05983.1| hypothetical protein SKA53_07756 [Loktanella vestfoldensis SKA53] Length = 156 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 11/145 (7%) Query: 166 CGLRISEALSLTPQNIMDDQSTLR-------IQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 GLR E +LT N+ D+ +R Q KG + R V L +R+A+++Y D Sbjct: 6 AGLRAKEIAALTVGNVFDETGAVREQFILSAAQSKGGQTRTVYLNQRLRRALVDYGDTIK 65 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278 ++ Q LF +G + + + + GL ++H+ R ++ T L + G Sbjct: 66 L---MDPQQALFASQKGGHFSANTMCQLFLDIYKACGLK-DASSHSGRRTYITRLANKGV 121 Query: 279 DLRSIQSILGHFRLSTTQIYTNVNS 303 +R + ++ GH +STTQ Y +VNS Sbjct: 122 GVRLLAALAGHAHISTTQRYIDVNS 146 >gi|229516134|ref|ZP_04405583.1| integrase [Vibrio cholerae RC9] gi|229346784|gb|EEO11753.1| integrase [Vibrio cholerae RC9] Length = 98 Score = 60.5 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 1/70 (1%) Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V K GG + Sbjct: 30 GITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV-LKVGGAGVRSPL 88 Query: 315 DQTHPSITQK 324 D P +++ Sbjct: 89 DALPPLTSER 98 >gi|225567989|ref|ZP_03777014.1| hypothetical protein CLOHYLEM_04062 [Clostridium hylemonae DSM 15053] gi|225163277|gb|EEG75896.1| hypothetical protein CLOHYLEM_04062 [Clostridium hylemonae DSM 15053] Length = 364 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 67/288 (23%), Positives = 120/288 (41%), Gaps = 35/288 (12%) Query: 38 SYECDTRQFLIFLAF-------YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD----- 85 +Y D R F FL +T + + + +L +I ++ + + D Sbjct: 60 NYAYDIRVFFHFLMEANPNYKNHTISQFDVSDLEKLEPVDIEEYMEYLKVYRHEDELITN 119 Query: 86 --RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV-- 141 + L R +S ++SF Y K +I T++ L + K + L+ + L+D V Sbjct: 120 SEKGLSRKMSALRSFYSYYFKHQIITKNPTLLVDMPKLHDKAIIRLDADEVALLLDYVET 179 Query: 142 --------LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 L H+TK R+ AIL LL G G+R+SE + L ++ + + + K Sbjct: 180 CGSKLSGQALTYYHKTK---DRDLAILTLLLGTGIRVSECVGLDLTDVDFKNNGITVTRK 236 Query: 194 GDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 G +V V KA+L Y + P + N LF + + + + ++ Sbjct: 237 GGNQMVVYFGEEVEKALLTYINGDRKAATPLSGHEN---ALFLSTQRRRMGIQAMENMVK 293 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + R + T H LR ++ T L GD+ + +LGH ++TT+ Sbjct: 294 KYARQVTPNKKITPHKLRSTYGTSLYKETGDIYLVADVLGHKDVNTTK 341 >gi|257055983|ref|YP_003133815.1| site-specific recombinase XerD [Saccharomonospora viridis DSM 43017] gi|256585855|gb|ACU96988.1| site-specific recombinase XerD [Saccharomonospora viridis DSM 43017] Length = 354 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 86/190 (45%), Gaps = 24/190 (12%) Query: 133 QALTLVDNVLLHTSHETKW---IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-- 187 +ALTL + + +S + + + R+ AIL LL G R+SE +I + T Sbjct: 149 EALTLREAPAVRSSGQLRADQRLSLRDEAILRLLVESGPRVSELCGANRSDIRVHEETGT 208 Query: 188 --LRIQGKGDKIRIVPLLPSVRKAILEY--------------YDLCPFDLNLNIQLPLFR 231 L ++GKG K R +PL + I Y +D+ + LF Sbjct: 209 PVLHVRGKGRKDRDLPLSKPTVEVIERYLAEERPAPPTPQRPHDMVERRRIDDAAGALFV 268 Query: 232 GIRGKPLNPGVFQRYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290 +RG L+P QR + R + +LG T H+LRH+ T L G D+ ++ I GH Sbjct: 269 SVRGWRLSPRDVQRMVQRYAKEFLGR--RATPHSLRHTALTVLARAGVDIATVAQIAGHA 326 Query: 291 RLSTTQIYTN 300 LSTT +Y + Sbjct: 327 SLSTTSVYMD 336 >gi|229157770|ref|ZP_04285845.1| Integrase/recombinase (XerC/CodV family) [Bacillus cereus ATCC 4342] gi|228625727|gb|EEK82479.1| Integrase/recombinase (XerC/CodV family) [Bacillus cereus ATCC 4342] Length = 323 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 73/299 (24%), Positives = 135/299 (45%), Gaps = 50/299 (16%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS------------ 76 + LS+ T++SY+ Q L A Y E ++ I + ++ IR +I Sbjct: 18 KHLSRKTIRSYD----QTLKLFASYLERELKITDVDKVKPLHIRTYIKYLRERGKYTFTS 73 Query: 77 ----------KRRT---QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 RRT + I + ++ L IK F +L+ + ++ I N+ ++K Sbjct: 74 NTASEQINYPTRRTDYGKTISETTIANYLRNIKVFFNFLEAEEDIAKNPISNIESIK--- 130 Query: 124 SLPRALNEKQALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 P+ +++ L VD + +L++ + + R+ ++ L+ G+R E S+ +++ Sbjct: 131 --PQ--RKQKILLSVDEIKKVLYSIDISTFHGFRSYVMIKLILDTGIRAGECCSMQAEDL 186 Query: 182 -MDDQSTLRIQGKGDKIRIV---PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 + ++S L K K R V ++ + K L+Y D + LF IRG Sbjct: 187 DIKNKSILITNPKNKKQRYVYFSNIMANDLKRWLKYRD------RFSDAEYLFPTIRGTM 240 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 LN F+ IR + + + + T H LR++FA + + NGGD S+ +LGH + TQ Sbjct: 241 LNVNNFEASIRSIGKKVRVHF--TPHQLRNNFAKYYILNGGDWFSLSRVLGHSSVEVTQ 297 >gi|224540991|ref|ZP_03681530.1| hypothetical protein CATMIT_00142 [Catenibacterium mitsuokai DSM 15897] gi|224526090|gb|EEF95195.1| hypothetical protein CATMIT_00142 [Catenibacterium mitsuokai DSM 15897] Length = 417 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 74/280 (26%), Positives = 125/280 (44%), Gaps = 28/280 (10%) Query: 31 LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE--IRAFISKRRTQKIGDRSL 88 LSK T + Y R LIFL + ++ IT + LS IR F + +++ Sbjct: 129 LSKSTKKHY---IRISLIFLDYLNQKGITDVSYIDLSICNDYIRTFTG------MSFKTI 179 Query: 89 KRSLSGIKSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 ++ + G++ FL+YL + + + +++++M + KS +P E + LL Sbjct: 180 EQHICGLRYFLRYLNEENVLESDVASLIHMPAISKSTKIPSVWTEDEI-----KKLLQAI 234 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS 205 I R+ A++ L GLRIS+ +L N ++ L I Q K K +P+ + Sbjct: 235 DRNSPIGKRDYAMIVLACILGLRISDIKNLKFDNFNWEEKKLSIIQHKTKKPLTLPIPDA 294 Query: 206 VRKAILEY-------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 V A+++Y Y F + L +P F + + Y+++ + L Sbjct: 295 VGWAVIDYIKNGRPKYYESKF-IFLK-HMPPFGSLSDENHLSDRIHFYMKKAKIPLNKNC 352 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 H+LRH+ A+ LL G +L I SILGH T IY Sbjct: 353 HRGFHSLRHTSASMLLDAGVELPVITSILGHSSTDITSIY 392 >gi|89147640|gb|ABD62679.1| integrase [uncultured bacterium] Length = 163 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 4/66 (6%) Query: 238 LNPGVFQRYIRQ--LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 ++ Q+ +R LR + P T H+LRHSFATHLL G D+R++Q LGH + TT Sbjct: 99 IDESAMQKAMRAALLRSRISKP--ATCHSLRHSFATHLLERGADIRTVQEQLGHSDVRTT 156 Query: 296 QIYTNV 301 QIYT+V Sbjct: 157 QIYTHV 162 >gi|308185145|ref|YP_003929278.1| integrase/recombinase (xerD) [Helicobacter pylori SJM180] gi|308061065|gb|ADO02961.1| integrase/recombinase (xerD) [Helicobacter pylori SJM180] Length = 355 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 73/283 (25%), Positives = 127/283 (44%), Gaps = 43/283 (15%) Query: 48 IFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKR 105 +FL F Y + + +++ R LS ++ F+ + Q S+ + + ++ F YL +K+ Sbjct: 77 LFLFFEYFRDNLKLRSFRMLSEEQVINFLFEL-AQNRKPSSMAKYVMYLRQFFDYLDRKK 135 Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165 + + N+ K SLPR LN K + + +L + T + RN +L ++ Sbjct: 136 HYNFDFALKNLAFAKTKESLPRHLNYKDLKSFLKTLLEYKP--TTSFEKRNKCVLLIVIL 193 Query: 166 CGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223 GLR E L++ ++I ++ ++ IQGKG K R ++K++LE L+L Sbjct: 194 GGLRKCEVLNIELKHIQVEEQNYSILIQGKGRKERK----AYIKKSLLE--------LSL 241 Query: 224 NIQLP------------LFRGIRGKPLN--------PGVFQRYIRQLRRYLGLPLSTTAH 263 N L LF+ + K N P +F+ + Q++ Y T H Sbjct: 242 NAWLSDDCRLKYFNGAYLFKKDKQKSQNSLTLYNFIPLIFK--LAQIKHYK--QYGTGLH 297 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 RHSFAT + DL LGH L +T+IY + ++ Sbjct: 298 LFRHSFATLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHN 340 >gi|294787223|ref|ZP_06752476.1| putative phage integrase family protein [Parascardovia denticolens F0305] gi|315227229|ref|ZP_07869016.1| possible integrase [Parascardovia denticolens DSM 10105] gi|294484579|gb|EFG32214.1| putative phage integrase family protein [Parascardovia denticolens F0305] gi|315119679|gb|EFT82812.1| possible integrase [Parascardovia denticolens DSM 10105] Length = 280 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 64/283 (22%), Positives = 119/283 (42%), Gaps = 51/283 (18%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W++ L I RG + T++++ + + + L + + Q+S +I ++ + Sbjct: 20 WVKYLRI-RGCTPATIENWWYNVSRLALILN---------KPVYQISDEDIIDYMDR--- 66 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + ++ + + SF YL + ++ + + +K+ R + +Q Sbjct: 67 -GLSANGIRNNRNAFNSFFDYLITAGLREDNPLAALPKVKRDKHKMRPASRQQV-----E 120 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIR 198 LH D ++ +L G+R SE + ++++ D +T+ I GKGDK R Sbjct: 121 KGLHDP------DPTARLMVMMLADLGVRRSELAQIRKEDLIQEDKYTTIIIHGKGDKDR 174 Query: 199 IVPL---LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 I+PL L + A+ + Y LF G ++P RY+++ Sbjct: 175 ILPLSQRLQQILTAMPDGY--------------LFPGRFHGHVHPDTVYRYVKRA----- 215 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 T H +R FAT L GD +Q +LGH L+TTQ Y Sbjct: 216 --TGATPHAIRRRFATDLWHATGDAVKVQGMLGHESLATTQAY 256 >gi|291326772|ref|ZP_06125804.2| putative integrase/recombinase y4rA [Providencia rettgeri DSM 1131] gi|291312880|gb|EFE53333.1| putative integrase/recombinase y4rA [Providencia rettgeri DSM 1131] Length = 322 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 92/185 (49%), Gaps = 11/185 (5%) Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA--LSLTPQNI 181 SLP++L+ + LL++ +T I R A++ GLRI E LSL + Sbjct: 125 SLPKSLSTDEI-----EQLLNSLGQTDPIGLRADAMVRCALDLGLRIGEIARLSLDDIDW 179 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNP 240 + TLR + KG + ++PL + AI Y + P L+ + + R +P++ Sbjct: 180 VSGTITLR-RTKGRRDDVMPLPVTTGNAIAAYLQNGRPKTLHREV-FASHKTPRERPISR 237 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 V IRQ+ GL T+AH LRH+ A LL+ G ++ I IL H L+ T+IY Sbjct: 238 SVVSIAIRQVYTRAGLQY-TSAHLLRHTMANRLLATGASIKDIADILRHRSLNATRIYAK 296 Query: 301 VNSKN 305 ++S+N Sbjct: 297 LDSRN 301 >gi|295692920|ref|YP_003601530.1| integrase/recombinase [Lactobacillus crispatus ST1] gi|295031026|emb|CBL50505.1| Integrase/recombinase [Lactobacillus crispatus ST1] Length = 112 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/47 (59%), Positives = 34/47 (72%) Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G+ H LRHSFAT +L+NG DLRS+Q +LGH LS TQIYT+V Sbjct: 47 GISGKVHPHELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHV 93 >gi|326943329|gb|AEA19224.1| Phage integrase [Bacillus thuringiensis serovar chinensis CT-43] Length = 347 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 71/287 (24%), Positives = 123/287 (42%), Gaps = 41/287 (14%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 S+ T + Y D FL ++ K +I TI++LS+ E+ + + ++K +L+R Sbjct: 62 SERTKKLYLHDLSHFLRYI------KESIGTIKELSHNEMEIYFYQL-SKKYAATTLRRK 114 Query: 92 LSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 + ++ FLKY+ ++ S+ L +++K + R L ++ N +L T +T Sbjct: 115 KTVVQQFLKYVYDNNGLSDNFSSRLKKVSVRKEELINRDLFPEEV-----NEILDTLKKT 169 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIVPLLPS 205 + ++ +LL GLRI E + ++ S LR+ GKG+K R V + Sbjct: 170 NFF---MYSLFFLLTTTGLRIEEVANTKWADLAFHSSLNVYLLRVVGKGNKTREVRIFED 226 Query: 206 VRKAILEYYDLCPF--------DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 V D+C L+ + G +Y+ + LP Sbjct: 227 VLD------DICRLRQLRKQTSQLDASSISAFLPKANGSHYRADYLSKYVAEKIEETNLP 280 Query: 258 L------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 T HT RH FA HL+ G +L+ I+ LGH + TT+ Y Sbjct: 281 FLRYRKDRITPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERY 327 >gi|44004580|ref|NP_982007.1| Tn554-related, transposase A [Bacillus cereus ATCC 10987] gi|42741646|gb|AAS45091.1| Tn554-related, transposase A [Bacillus cereus ATCC 10987] Length = 519 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 58/229 (25%), Positives = 105/229 (45%), Gaps = 31/229 (13%) Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 K+ R++ R ++ KSFL ++ K K + N+L ++ +K + +Q T N+ Sbjct: 278 KLRGRNMGRPMNYSKSFLHHINKNKPSI-RNVLKVKEPRKRIQILTKEQVRQTFTATTNI 336 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-----LRIQGK--- 193 R++ ++ LL+ GLRI EALSL ++ + D LR +G+ Sbjct: 337 -------------RDAFLIQLLFETGLRIGEALSLYLEDFIFDYKKGHRIRLRDRGELEN 383 Query: 194 GDKIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRY 246 G K++ V + +++ YD + D+ N RG G+P+N + Sbjct: 384 GAKLKTGEREIFVSQHLMDLYDDYLYEIIDELDIETNFVFIKLRGRNMGRPMNYSDVESL 443 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 ++LR+ + + H LRH+ AT D++ +Q LGH ++ TT Sbjct: 444 FKRLRKKTKIDIH--PHLLRHTHATIYYQETKDIKQVQERLGHAQIQTT 490 >gi|331004356|ref|ZP_08327830.1| hypothetical protein HMPREF0491_02692 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411160|gb|EGG90577.1| hypothetical protein HMPREF0491_02692 [Lachnospiraceae oral taxon 107 str. F0167] Length = 352 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 64/263 (24%), Positives = 123/263 (46%), Gaps = 34/263 (12%) Query: 58 ITIQTIRQLSYTEIRAFIS--KRRT---QKIGDR--SLKRSLSGIKSFLKYLKKRKITTE 110 I + ++ LS T+I ++ K R +KI ++ ++KR +S +KS KY + + +E Sbjct: 76 IPLSSLESLSVTDIEEYMEYLKYRDTDGKKISNKENAVKRKISTLKSVFKYFYRVEKLSE 135 Query: 111 SNILNMRNLKKSNSLPRALNEKQALTL-VDNVLL---------------HTSHETKWIDA 154 N+ + LP+ L+ K+ + L +D V + H I Sbjct: 136 -------NIMERVQLPK-LHSKEIIRLDIDEVAMMIDEAENGEGLSERQKAYHNKTKI-- 185 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ A+L LL G G+R+SE + L ++ + + I KG K + V++A+ Y+ Sbjct: 186 RDVALLSLLLGTGIRVSECVGLNISDVDFKHNGILIHRKGGKEVTIYFSDEVKEALQNYF 245 Query: 215 DLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 D L + + LF ++ K L+ ++ +++ + + T H LR ++ T+L Sbjct: 246 DERVLILEESGHEGALFLSMQNKRLSVRSVEKLVKKYAKIISPLKKITPHKLRSTYGTNL 305 Query: 274 LSNGGDLRSIQSILGHFRLSTTQ 296 GD+ + +LGH ++TT+ Sbjct: 306 YKETGDIYLVADVLGHSDVNTTK 328 >gi|223369834|gb|ACM88786.1| integrase [uncultured bacterium] Length = 163 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 44/69 (63%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 IR L+ Q+ IR+ G+ ++HT RH FATHLL +G D+R++Q +LGH + Sbjct: 94 IRRHHLHETRAQKAIRRAALASGIRKRISSHTFRHCFATHLLESGYDIRTVQELLGHADV 153 Query: 293 STTQIYTNV 301 STT IYT+V Sbjct: 154 STTMIYTHV 162 >gi|229099925|ref|ZP_04230847.1| Integrase-recombinase [Bacillus cereus Rock3-29] gi|228683470|gb|EEL37426.1| Integrase-recombinase [Bacillus cereus Rock3-29] Length = 390 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 68/153 (44%), Gaps = 10/153 (6%) Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 N IL L G RI E + +++ D + L++ GKGDK+R + + + + I E Sbjct: 218 NYTILLALASTGARIQELCTARVKDLHYDGKYWLKVTGKGDKVRELFIPEHLFQCISEMR 277 Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266 F L+ + PLF RG NP + + + L TAHT R Sbjct: 278 RRRGFQTILDRGDECPLFVNQRGNFYNPKTLSNQVTDMIKKTNLDFLKYRENPVTAHTFR 337 Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298 H+FA + G DL + LGH + TT+IY Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370 >gi|116494901|ref|YP_806635.1| site-specific tyrosine recombinase XerS [Lactobacillus casei ATCC 334] gi|116105051|gb|ABJ70193.1| tyrosine recombinase XerC subunit [Lactobacillus casei ATCC 334] Length = 370 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 74/341 (21%), Positives = 139/341 (40%), Gaps = 76/341 (22%) Query: 31 LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFIS-------- 76 ++ TL Y ++FL +L A + + + + + LS + +AF++ Sbjct: 33 IADSTLYQYLHFYQEFLNWLINSGVTAASSPQTVPLTVLEHLSLRDAQAFMAYLLERPSK 92 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES-------NILNMRNLKKSNSLPRAL 129 +++ RS+ L GIK+ ++L + N+ N LK Sbjct: 93 THHNKRMTRRSVALRLVGIKALYRFLTEESEPHADGEPYFYRNVWNKVKLKTHTETASYR 152 Query: 130 NEK-QALTLVDNVLLHTSHETKWID-------------------ARNSAILYLLYGCGLR 169 N K Q + VD + +W+D RN A++ LL+G G+R Sbjct: 153 NHKLQEMLFVDG---EDAKFLQWLDQSYAQQLPAKPRRYFEATKVRNLAMIALLFGSGVR 209 Query: 170 ISEALSLTPQNIMDDQSTLRIQGKG---DKIRIVPLL-PSV------RKAILEYYDLCPF 219 +SE +++ +++ D+ T+++ KG D++ + P V R AI+ Y Sbjct: 210 VSELVNMNLEDLNMDRHTVQVVRKGNFQDRVNFADWIDPYVQAYLTQRAAIIGYQKPTS- 268 Query: 220 DLNLNIQLPLFRGIRGKPLN-------PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 PLF + G+ +N F+RY R +T H RH+ T+ Sbjct: 269 --------PLFVTVVGQKINRIRQNTIEAFFKRYTTDYGR------PSTPHKARHTLGTN 314 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 + + D++ + LG S T +Y N++ K+G + + E+ Sbjct: 315 IYTVTKDVQQVADQLGQTTTSATDLYINLSDKSGKEALREV 355 >gi|227535100|ref|ZP_03965149.1| site-specific tyrosine recombinase XerS [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187315|gb|EEI67382.1| site-specific tyrosine recombinase XerS [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 370 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 63/306 (20%), Positives = 128/306 (41%), Gaps = 58/306 (18%) Query: 54 TEEKITIQTIRQLSYTEIRAFIS--------KRRTQKIGDRSLKRSLSGIKSFLKYLKKR 105 + + + + + LS + +AF++ +++ RS+ L GIK+ ++L + Sbjct: 62 SPQTVPLTVLEHLSLRDAQAFMAYLLERPSKTHHNKRMTRRSVALRLVGIKALYRFLTEE 121 Query: 106 KITTES-------NILNMRNLKKSNSLPRALNEK-QALTLVDNVLLHTSHETKWID---- 153 N+ N LK N K Q + VD + +W+D Sbjct: 122 SEPHADGEPYFYRNVWNKVKLKTHTETASYRNHKLQEMLFVDG---EDAKFLQWLDQSYA 178 Query: 154 ---------------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG---D 195 RN A++ LL+G G+R+SE +++ +++ D+ T+++ KG D Sbjct: 179 QQLPAKPRRYFEATKVRNLAMIALLFGSGVRVSELVNMNLEDLNMDRHTVQVVRKGNFQD 238 Query: 196 KIRIVPLL-PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-------PGVFQRYI 247 ++ + P V+ + + + + + PLF + G+ +N F+RY Sbjct: 239 RVNFADWIDPYVQAYLTQRAAIIGYQKPTS---PLFVTVVGQKINRIRQNTIEAFFKRYT 295 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 R +T H RH+ T++ + D++ + LG S T +Y N++ K+G Sbjct: 296 TDYGR------PSTPHKARHTLGTNIYTVTKDVQQVADQLGQTTTSATDLYINLSDKSGK 349 Query: 308 DWMMEI 313 + + E+ Sbjct: 350 EALREV 355 >gi|300956936|ref|ZP_07169191.1| site-specific recombinase, phage integrase family [Escherichia coli MS 175-1] gi|300316283|gb|EFJ66067.1| site-specific recombinase, phage integrase family [Escherichia coli MS 175-1] gi|323974156|gb|EGB69289.1| phage integrase [Escherichia coli TW10509] Length = 108 Score = 60.5 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 26/41 (63%), Positives = 32/41 (78%) Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T HT RHSFATHLL G D+R++Q +LGH + TTQIYT+V Sbjct: 47 TCHTFRHSFATHLLQAGRDIRTVQELLGHNDVKTTQIYTHV 87 >gi|319900072|ref|YP_004159800.1| integrase family protein [Bacteroides helcogenes P 36-108] gi|319415103|gb|ADV42214.1| integrase family protein [Bacteroides helcogenes P 36-108] Length = 431 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 72/151 (47%), Gaps = 20/151 (13%) Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYY 214 L+GC GL + +LT I MD I + K R+ VPL+ ++ I Y Sbjct: 252 FLFGCFTGLSYIDIKTLTHDKIQRMDFDGEEWIITRRTKTRVSSNVPLMEIAKELIERYK 311 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL- 273 L DL P+ P N V R+++Q+ + G+ H RH+FAT + Sbjct: 312 GLAGGDL----VFPM-------PSNS-VCNRHLKQIAKACGIHKEIGFHLSRHTFATTVY 359 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 L NGG + ++ ILGH +STTQIY V ++ Sbjct: 360 LCNGGTIEALSKILGHKHISTTQIYAEVTNR 390 >gi|154000910|gb|ABS57023.1| integrase [uncultured bacterium] Length = 158 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/60 (48%), Positives = 40/60 (66%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 F+R ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 99 TFRRAFKRAVEQAGIAKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|62815912|emb|CAH17565.1| Transposase A [Staphylococcus aureus] Length = 361 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 99/217 (45%), Gaps = 37/217 (17%) Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 K FL ++ K + + N+L +R KK R L K+ ++D HT Sbjct: 139 FKGFLHHVNKGRY--QKNVLKLRVKKKQ---IRTLRSKEVKQIIDAC--HTK-------- 183 Query: 155 RNSAILYLLYGCGLRISEALSL--------------TPQNIMDDQSTLRIQGKGDKIRIV 200 R+ IL L+Y GLRI E LSL TP+++ +++ ++++ K I + Sbjct: 184 RDKLILMLMYEGGLRIGEVLSLRLEDIVTWDNQIHLTPRDVNVNEAYIKLR-KERTIHVS 242 Query: 201 PLLPSVRKA--ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 L S+ I EY + D + + L G GKPL +R++ + G+ Sbjct: 243 KELMSLYTDYLIYEYSEELEHDY---VFISLKEGYFGKPLKYQSVLGLVRRIVKRTGIEF 299 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 T+H LRH+ AT L+ G D+ +Q LGH + TT Sbjct: 300 --TSHMLRHTHATQLIREGWDVAFVQKRLGHAHVQTT 334 >gi|13488299|ref|NP_085850.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|14028099|dbj|BAB54691.1| integrase/recombinase [Mesorhizobium loti MAFF303099] Length = 416 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 90/204 (44%), Gaps = 38/204 (18%) Query: 122 SNSLPRALN---EKQALTLVDNV---LLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175 + ++PR N K A+TL + LL +S + R+ A+L L GLR E L Sbjct: 214 AGTIPRPANRRLAKLAVTLSKSEITDLLASSDGSLPSARRDHAMLRCLADLGLRGCEVLK 273 Query: 176 LTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY-------------YDLC--PF 219 LT +I TLRI +GK + ++PL +AI EY + C PF Sbjct: 274 LTLSDIDWRNGTLRIVKGKSRRTDMLPLPFETGRAIAEYLSKERPATSNRALFVRCKAPF 333 Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279 D KPL+ V ++ R G T H LRHS A+ LL +G Sbjct: 334 D---------------KPLSTVVVHNIVKAAYRRCGWS-HTRPHILRHSVASQLLRDGAP 377 Query: 280 LRSIQSILGHFRLSTTQIYTNVNS 303 L+ I +L H L+T+ +Y V++ Sbjct: 378 LKEISDVLRHRSLNTSMVYLKVDA 401 >gi|260061988|ref|YP_003195068.1| tyrosine type site-specific recombinase [Robiginitalea biformata HTCC2501] gi|88783550|gb|EAR14721.1| tyrosine type site-specific recombinase [Robiginitalea biformata HTCC2501] Length = 423 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 16/156 (10%) Query: 162 LLYGC--GLRISEALSLTPQNIMDD-QSTLRIQGKGDKIRI---VPLLPSVRKAILEYYD 215 ++ C GL + LTP NI+ +L IQ K R +PLLP+ + I+E Y+ Sbjct: 249 FVFCCFTGLAYIDVKKLTPNNIVKHIDGSLWIQSARQKTRSKLGIPLLPTALE-IIEKYE 307 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274 P +N + +P+ R Y++++ G+ T H RH+FAT + L Sbjct: 308 DHPKVVNGDCVIPVLSNQRSNA--------YLKEIADICGITKHLTTHLARHTFATTVTL 359 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 SNG + ++ +LGH L TQ Y + +K D M Sbjct: 360 SNGVPIETVGKLLGHRNLRATQHYAKIVNKKVADDM 395 >gi|56410450|ref|YP_145824.1| integrase/recombinase [Geobacillus kaustophilus HTA426] gi|56378347|dbj|BAD74256.1| integrase/recombinase [Geobacillus kaustophilus HTA426] Length = 304 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 70/301 (23%), Positives = 137/301 (45%), Gaps = 31/301 (10%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 +L E +LQ E+G S+ T+ SY D F L ++ +T IR+ I+ Sbjct: 1 MLNEYVAYLQ----EKGASRNTIISYTNDLNIFFHDLHIRPDDYVTPADIRKW----IQH 52 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA---LN 130 ++ + + ++ R L+ ++SF + + ++ + ++++LK ++ L Sbjct: 53 MLNPEEGKPLAISTINRRLNSLRSFYAWAVEHHYIEQNPMKDIQDLKTADEDHEKIMWLT 112 Query: 131 EKQALTLVDNVLLHTSHETKWIDA-----RNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 E++ L+ + +++ +D R+ A++YLL GLR+ E +L ++ + Sbjct: 113 EEEFEDLLQR-MRKKPVQSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEM 171 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL------N 239 +RI GKG K+R VP + ++ A LE D F + + P + P + Sbjct: 172 KRIRIVGKGMKVRTVP-ISNILLAELE--DWLEFRAEMAKKKP---HVAASPYVFYSQRS 225 Query: 240 PGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRLSTTQI 297 P R I+++ LP T H RH+F +L + D+ ++ + GH ++TT Sbjct: 226 PKFSVRGIQRMIESYSLPNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSR 285 Query: 298 Y 298 Y Sbjct: 286 Y 286 >gi|330860733|emb|CBX71025.1| integrase [Yersinia enterocolitica W22703] Length = 332 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 30/189 (15%) Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172 ++N+R + LN+ Q +L+D LH + E + I+ L G R +E Sbjct: 138 LMNIREFDQPEREMAWLNDDQIDSLLDASDLHGNPEL-------TLIVRLCLSTGARWNE 190 Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232 + I ++ T I KG K R VPL + +A+ + Sbjct: 191 IAKIKASQISPNKITF-INTKGKKNRTVPLSEEMYQALAAH------------------- 230 Query: 233 IRGKPLNPGVFQRYIRQLR-RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291 +GK P ++++ R +R + LP+ H LRH+FA+H + GG++ +Q ILGH Sbjct: 231 -KGKAFAP-CYKQFYRVIRLAQIELPVGQMTHVLRHTFASHFMMAGGNIIVLQRILGHSD 288 Query: 292 LSTTQIYTN 300 + T Y++ Sbjct: 289 IRVTMRYSH 297 >gi|256840487|ref|ZP_05545995.1| integrase [Parabacteroides sp. D13] gi|256737759|gb|EEU51085.1| integrase [Parabacteroides sp. D13] Length = 431 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 72/151 (47%), Gaps = 20/151 (13%) Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYY 214 L+GC GL + +LT I MD I + K R+ VPL+ ++ I Y Sbjct: 252 FLFGCFTGLSYIDIKTLTHDKIQRMDFDGEEWIITRRTKTRVSSNVPLMEIAKELIERYK 311 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL- 273 L DL P+ P N V R+++Q+ + G+ H RH+FAT + Sbjct: 312 GLAGGDL----VFPM-------PSNS-VCNRHLKQIAKACGIHKEIGFHLSRHTFATTVY 359 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 L NGG + ++ ILGH +STTQIY V ++ Sbjct: 360 LCNGGTIEALSKILGHKHISTTQIYAEVTNR 390 >gi|94442302|dbj|BAE93650.1| integron integrase [uncultured bacterium] Length = 162 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 3/98 (3%) Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 PS K+ + Y F N P ++ ++ Q+ I++ + + +H Sbjct: 67 PSAAKSWMWQY---AFPSNQRCFAPDLGTMKRHRVHQTSVQKAIKRAVTRCNINMRVGSH 123 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 RHSFATHLL NG D+R+IQ +LGH +STT IYT+V Sbjct: 124 AFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161 >gi|317495285|ref|ZP_07953655.1| phage integrase [Gemella moribillum M424] gi|316914707|gb|EFV36183.1| phage integrase [Gemella moribillum M424] Length = 299 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 67/300 (22%), Positives = 141/300 (47%), Gaps = 18/300 (6%) Query: 10 VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT 69 +S +LL + + +L+N ++ S T+ SY+ D R+ ++L E +I+ L+ Sbjct: 1 MSEKLLNDFREYLEN---KKKFSMNTINSYDRDLRKIFLYLV---EMGYSIEEYSWLNEE 54 Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRA 128 I ++ + + +L R++S + F++YL ++ SN +N+ ++ K + Sbjct: 55 LITRYLGYLKEKDYSSATLSRTISTVHIFIEYLYNTRLI--SNKINIDVHVDKDDQHNLI 112 Query: 129 LNEKQALTLVDNVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 + +Q + + ++ +TK W+D R+ AI L Y G++ +E ++L +++ Sbjct: 113 IFTRQEIAKILDI------DTKNWMDYRDKAIFELSYSIGIKPTECINLELKDVNTTIGY 166 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRY 246 L+ + K + R V L AI Y + + ++ + LF G+ ++ F + Sbjct: 167 LKYKKK-EGYRTVALNKESTDAIKNYIEELKKEYPDIEDESKLFLNHDGEGISRQGFWKI 225 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 ++ ++ LGL R+S A HLL + +Q +LG + + ++Y N K G Sbjct: 226 FKKRQQDLGLEKELNTMNFRNSLAIHLLEDKVPAEEVQELLGLKNIHSLKLYFNNLKKPG 285 >gi|298484397|ref|ZP_07002556.1| integrase [Bacteroides sp. D22] gi|298269461|gb|EFI11063.1| integrase [Bacteroides sp. D22] Length = 431 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 71/151 (47%), Gaps = 20/151 (13%) Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYY 214 L+GC GL + +LT I MD I + K R+ VPL+ ++ I Y Sbjct: 252 FLFGCFTGLSYIDIKTLTHDKIQRMDFDGEEWIITRRTKTRVSSNVPLMEIAKELIERYK 311 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL- 273 L D P+ P N G ++++Q+ + G+ H RH+FAT + Sbjct: 312 GLAGGDF----VFPM-------PSN-GTCNKHLKQIAKACGISKEIGFHLSRHTFATTVY 359 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 L NGG + ++ ILGH +STTQIY V +K Sbjct: 360 LCNGGTIEALSKILGHKHISTTQIYAEVTNK 390 >gi|228943081|ref|ZP_04105576.1| Phage integrase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975868|ref|ZP_04136397.1| Phage integrase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228783831|gb|EEM31881.1| Phage integrase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816610|gb|EEM62740.1| Phage integrase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 351 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 71/287 (24%), Positives = 123/287 (42%), Gaps = 41/287 (14%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 S+ T + Y D FL ++ K +I TI++LS+ E+ + + ++K +L+R Sbjct: 66 SERTKKLYLHDLSHFLRYI------KESIGTIKELSHNEMEIYFYQL-SKKYAATTLRRK 118 Query: 92 LSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 + ++ FLKY+ ++ S+ L +++K + R L ++ N +L T +T Sbjct: 119 KTVVQQFLKYVYDNNGLSDNFSSRLKKVSVRKEELINRDLFPEEV-----NEILDTLKKT 173 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIVPLLPS 205 + ++ +LL GLRI E + ++ S LR+ GKG+K R V + Sbjct: 174 NFF---MYSLFFLLTTTGLRIEEVANTKWADLAFHSSLNVYLLRVVGKGNKTREVRIFED 230 Query: 206 VRKAILEYYDLCPF--------DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 V D+C L+ + G +Y+ + LP Sbjct: 231 VLD------DICRLRQLRKQTSQLDASSISAFLPKANGSHYRADYLSKYVAEKIEETNLP 284 Query: 258 L------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 T HT RH FA HL+ G +L+ I+ LGH + TT+ Y Sbjct: 285 FLRYRKDRITPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERY 331 >gi|89147379|gb|ABD62550.1| integrase [uncultured bacterium] Length = 163 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 41/69 (59%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 IR + Q +++ L T H LRHSFATHLL +G D+R++Q +LGH + Sbjct: 94 IRRHHVTDAAVQTAVKRAAASAALQKRVTPHVLRHSFATHLLESGSDIRTVQELLGHKDV 153 Query: 293 STTQIYTNV 301 STT IYT+V Sbjct: 154 STTVIYTHV 162 >gi|89147440|gb|ABD62580.1| integrase [uncultured bacterium] Length = 164 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/136 (33%), Positives = 71/136 (52%), Gaps = 23/136 (16%) Query: 185 QSTLRIQGKGDKIRIVP--LLPSVR-----KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 + LRIQ + +IR+ LLP R +A+ Y P +L P R Sbjct: 32 EPQLRIQMEKVRIRLEENLLLPGFRGASMPEALERKYPGAPKELMWQYMFP----ARKPA 87 Query: 238 LNP--GVFQRYIRQ---LRRYLGLPL-------STTAHTLRHSFATHLLSNGGDLRSIQS 285 L+P G +++ R L++ + + + + HTLRHSFATHLL +G D+R++Q Sbjct: 88 LDPRTGTLRQHYRHESYLQKTVKFAIRKSQVSKNASCHTLRHSFATHLLEDGYDIRTVQE 147 Query: 286 ILGHFRLSTTQIYTNV 301 ++GH ++TT IYT+V Sbjct: 148 LMGHKNVNTTMIYTHV 163 >gi|308067605|ref|YP_003869210.1| Site-specific recombinase XerC [Paenibacillus polymyxa E681] gi|305856884|gb|ADM68672.1| Site-specific recombinase XerC [Paenibacillus polymyxa E681] Length = 281 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 67/267 (25%), Positives = 118/267 (44%), Gaps = 32/267 (11%) Query: 41 CDTRQFLIFLAFY---TEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR--SLKRSLSGI 95 C R L F+A+Y TE + + E+ K+ Q ++ R ++ + Sbjct: 23 CYIRDVLQFIAWYRGKTENGLD-------QWIELDGIEYKKYLQSTNQAILTINRKIASV 75 Query: 96 KSFLKYLKKRK-ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 F +++ ++ I E +I +RN K + L EK L + + H + Sbjct: 76 NVFAQWMHQQGYIKEEIHIEAVRN--KVVRQYKGLAEKDLWKLRNEI-----HRMG--NR 126 Query: 155 RNSAILYLLYGCGLRISE--ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212 + ++ LL G G+R+SE + L I + + L++ GKG+ R +PL VRKAI Sbjct: 127 MHICMIELLLGTGIRVSELVGIKLKDIEISERKGLLKVFGKGNSFRTIPLNKDVRKAITR 186 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 Y ++ P + + + + +N + +Y ++ + T H LRH+ Sbjct: 187 YLEVRPHSESEYLCIGQRGSLERNAINL-ILNKYGDRIN------VKVTPHMLRHTLGYK 239 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYT 299 L+ L +IQ ILGH ++TT IYT Sbjct: 240 LVKT-TPLTTIQQILGHDHVATTNIYT 265 >gi|332161996|ref|YP_004298573.1| Integrase family protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666226|gb|ADZ42870.1| Integrase family protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 314 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 30/189 (15%) Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172 ++N+R + LN+ Q +L+D LH + E + I+ L G R +E Sbjct: 120 LMNIREFDQPEREMAWLNDDQIDSLLDASDLHGNPEL-------TLIVRLCLSTGARWNE 172 Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232 + I ++ T I KG K R VPL + +A+ + Sbjct: 173 IAKIKASQISPNKITF-INTKGKKNRTVPLSEEMYQALAAH------------------- 212 Query: 233 IRGKPLNPGVFQRYIRQLR-RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291 +GK P ++++ R +R + LP+ H LRH+FA+H + GG++ +Q ILGH Sbjct: 213 -KGKAFAP-CYKQFYRVIRLAQIELPVGQMTHVLRHTFASHFMMAGGNIIVLQRILGHSD 270 Query: 292 LSTTQIYTN 300 + T Y++ Sbjct: 271 IRVTMRYSH 279 >gi|320352375|ref|YP_004193714.1| integrase family protein [Desulfobulbus propionicus DSM 2032] gi|320120877|gb|ADW16423.1| integrase family protein [Desulfobulbus propionicus DSM 2032] Length = 344 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 22/173 (12%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211 +D + L+ GLR EAL+L ++I + + T+R+ GKG K RIVP L SVR Sbjct: 182 LDPEYRLLFLLMADHGLRKEEALNLQVEDIDEARKTIRVYGKGSKYRIVPFL-SVR---- 236 Query: 212 EYYDLCPFDLNLNIQLP-------LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 F+ LN L + GKP ++ + + + GL H Sbjct: 237 -------FEEELNKVLSERLEGFLVVNPATGKPYYS--IRKVLTRAAKKAGLSRQVYHHL 287 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQ 316 LRH+F + G + ++Q I+GH + TT +IYT+V G+ +I +Q Sbjct: 288 LRHTFGSLAAEAGMNPYALQRIMGHSNIETTNKIYTHVGLDFVGEEARKIREQ 340 >gi|282850454|ref|ZP_06259833.1| site-specific recombinase, phage integrase family [Veillonella parvula ATCC 17745] gi|282579947|gb|EFB85351.1| site-specific recombinase, phage integrase family [Veillonella parvula ATCC 17745] Length = 308 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 25/181 (13%) Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 + LN+ + TL+ N+ L + W+ + ++ G+R SEAL+LTP++ Sbjct: 116 KYLNQFELHTLLVNLKLTSEISWDWL-------ILIIAKTGMRFSEALALTPKDFDFSHQ 168 Query: 187 TLRIQGKGDKIRIVPLLP-----SVRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPL 238 +L + D LP S+RK L++ + F L P+F ++G+ Sbjct: 169 SLIVDKTWDYKGSGGFLPTKNRSSIRKIQLDWQTIIKFSELIKGLPEDKPIF--VKGRVF 226 Query: 239 NP---GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 N GV +RY ++L GLP+ + H LRH+ A+ LL G + S+ LGH ++TT Sbjct: 227 NSTINGVLERYCKKL----GLPV-ISIHGLRHTHASLLLFAGVSIASVARRLGHASMTTT 281 Query: 296 Q 296 Q Sbjct: 282 Q 282 >gi|229170556|ref|ZP_04298204.1| Phage integrase [Bacillus cereus AH621] gi|228612905|gb|EEK70082.1| Phage integrase [Bacillus cereus AH621] Length = 336 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 68/266 (25%), Positives = 118/266 (44%), Gaps = 37/266 (13%) Query: 53 YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE-- 110 Y +EK+ TI++LS+ E+ + + ++K +L+R + ++ FL+Y+ T+ Sbjct: 68 YIKEKVG--TIQELSHNEMEIYFYEL-SKKYAATTLRRKKTVVQQFLRYVYDNNGLTDDY 124 Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170 S + ++KK + R L ++ ++D L T+H A+ +LL GLRI Sbjct: 125 STRIKKVSVKKEALVNRDLFPEEVNEILD-TLKKTNHFM-------YALFFLLTTTGLRI 176 Query: 171 SEALSLTPQNIMDDQST----LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF------- 219 E + +++ S LR+ GKG+K R V + V LE D+C Sbjct: 177 EEVANAKWADLVFHSSLNTYLLRVVGKGNKAREVRIFEDV----LE--DICRLRQLRRQT 230 Query: 220 -DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLRHSFATH 272 L+++ G +Y+ + LP T HT RH FA + Sbjct: 231 SKLDVSSTSAFLPKADGSHYRADYLSKYVAEKIEETNLPFLRHRRDRITPHTCRHFFANY 290 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIY 298 L+ G +L+ I+ LGH + TT+ Y Sbjct: 291 LMGKGVELKKIRDYLGHESIMTTERY 316 >gi|154000930|gb|ABS57033.1| integrase [uncultured bacterium] Length = 158 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/60 (48%), Positives = 39/60 (65%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 FQR ++ G+ T HTLRH FAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 99 TFQRAFKRAVEQAGITKPATPHTLRHPFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|89147516|gb|ABD62618.1| integrase [uncultured bacterium] Length = 163 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 26/47 (55%), Positives = 36/47 (76%) Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G+ T+H LRH+FATHLL G D+R++Q +LGH ++TTQIYT+V Sbjct: 116 GIEKRITSHALRHAFATHLLEAGTDIRTLQELLGHSDVATTQIYTHV 162 >gi|312139793|ref|YP_004007129.1| phague integrase [Rhodococcus equi 103S] gi|311889132|emb|CBH48445.1| putative phague integrase [Rhodococcus equi 103S] Length = 341 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 64/314 (20%), Positives = 122/314 (38%), Gaps = 35/314 (11%) Query: 19 QNWLQNLEIERGLSKL---TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR-AF 74 + W + R +K TL++Y D FL+ T ++ ++ ++ ++ AF Sbjct: 9 EAWFAEFLLHRSTAKPSPHTLKAYRQDFAAISGFLSEQTGVPVSALSVEAITKPSMQQAF 68 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 S T ++ S++R S + YL + + + K +P+AL Sbjct: 69 ASFAATHEVA--SIRRCWSTWNTLCDYLFSIDTIVANPMSAVLRPKAPKRIPKALPADAV 126 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL-------TPQNIMDDQST 187 L+ + + + R+ AI+ G+R SE +++ P Sbjct: 127 TRLIQTLQEDDTDGVRPWGERDFAIILTALLTGMRSSELIAVDLGDVRSAPDPSGGSARV 186 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYD-----------------LCPFDLNLNIQLPLF 230 +R++GKG K R+ P++ + Y + P+ + PLF Sbjct: 187 IRVRGKGSKDRVATAEPALVATLTGYLESRIARFPETTKRRVPSGATPWQ-HFRSTDPLF 245 Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGL----PLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286 G G + G Q + + R G+ H RH+FAT++ + ++ + Sbjct: 246 VGADGTRITRGTLQYRVLRAYRRAGINGERAKGALTHQFRHTFATNMADENVSIFTLMRM 305 Query: 287 LGHFRLSTTQIYTN 300 LGH ++TTQ+YT Sbjct: 306 LGHESMNTTQVYTE 319 >gi|215408030|emb|CAS02342.1| integron integrase [uncultured bacterium] Length = 150 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/59 (49%), Positives = 39/59 (66%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+ Sbjct: 92 TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 150 >gi|191638411|ref|YP_001987577.1| site-specific tyrosine recombinase XerS [Lactobacillus casei BL23] gi|190712713|emb|CAQ66719.1| Tyrosine recombinase xerC [Lactobacillus casei BL23] gi|327382442|gb|AEA53918.1| Site-specific recombinase, phage integrase family [Lactobacillus casei LC2W] gi|327385640|gb|AEA57114.1| Site-specific recombinase, phage integrase family [Lactobacillus casei BD-II] Length = 370 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 73/338 (21%), Positives = 142/338 (42%), Gaps = 70/338 (20%) Query: 31 LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFIS-------- 76 ++ TL Y ++FL +L A + + + + + LS + +AF++ Sbjct: 33 IADSTLYQYLHFYQEFLNWLINSGVTAASSPQTVPLTVLEHLSLRDAQAFMAYLLERPSK 92 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYL-------------------KKRKITTESNILNMR 117 +++ RS+ L GIK+ ++L K K+ T + + R Sbjct: 93 THHNKRMTRRSVALRLVGIKALYRFLTEESEPHADGEPYFYRNVWNKVKLKTHTETASYR 152 Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLH--TSHETKWIDA---RNSAILYLLYGCGLRISE 172 N K L + + L +D + ++ +A RN A++ LL+G G+R+SE Sbjct: 153 NHKLQEMLFVGGEDAKFLQWLDQSYAQQLPAKPRRYFEATKVRNLAMIALLFGSGVRVSE 212 Query: 173 ALSLTPQNIMDDQSTLRIQGKG---DKIRIVPLL-PSV------RKAILEYYDLCPFDLN 222 +++ +++ D+ T+++ KG D++ + P V R AI+ Y Sbjct: 213 LVNMNLEDLNMDRHTVQVVRKGNFQDRVNFADWIDPYVQAYLTQRAAIIGYQKPTS---- 268 Query: 223 LNIQLPLFRGIRGKPLN-------PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275 PLF + G+ +N F+RY R +T H RH+ T++ + Sbjct: 269 -----PLFVTVVGQKINRIRQNTIEAFFKRYTTDYGR------PSTPHKARHTLGTNIYT 317 Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 D++ + LG S T +Y N++ K+G + + E+ Sbjct: 318 VTKDVQQVADQLGQTTTSATDLYINLSDKSGKEALREV 355 >gi|223369854|gb|ACM88796.1| integrase [uncultured bacterium] Length = 163 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 41/64 (64%) Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L Q+ ++ R + + + HTLRHSFATHLL +G D+R++Q +LGH + TT I Sbjct: 99 LAESAVQKMVKGAVRRTEIAKNASCHTLRHSFATHLLESGSDIRTVQELLGHNDVRTTMI 158 Query: 298 YTNV 301 YT+V Sbjct: 159 YTHV 162 >gi|14600982|ref|NP_147508.1| tyrosine recombinase XerC/XerD [Aeropyrum pernix K1] gi|5104468|dbj|BAA79783.1| tyrosine recombinase XerC/XerD [Aeropyrum pernix K1] Length = 362 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 75/151 (49%), Gaps = 11/151 (7%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212 D ++ I+ +L GLR+SE LSL ++ + +R+ GK K RIV L P R + E Sbjct: 139 DIIDALIVSMLAETGLRVSELLSLRLSDVDLGRGVVRVVGKYGKERIVFLGPLSRMLLEE 198 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFAT 271 Y P + I ++ V++R ++ L + GL P H LRH+FAT Sbjct: 199 YLASNPLPPDSRIIELSYQA---------VYKR-LKSLAKRAGLDPRKVRPHILRHTFAT 248 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 L G L ++Q +LGH + TQ+Y ++ Sbjct: 249 EALRRGMSLAALQRLLGHSDIKVTQLYLHMT 279 >gi|227872383|ref|ZP_03990731.1| possible tyrosine recombinase [Oribacterium sinus F0268] gi|227841772|gb|EEJ52054.1| possible tyrosine recombinase [Oribacterium sinus F0268] Length = 358 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 58/252 (23%), Positives = 110/252 (43%), Gaps = 27/252 (10%) Query: 67 SYTEIRAFISKRRTQKIG----------DRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116 Y E + +K++T K G ++S+KR +S +KSF YL K + E+ + Sbjct: 86 EYMEFLKYRTKKKTGKEGQIEEVEVLNHNKSIKRKISSLKSFFGYLYKTEQIKENKTALL 145 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTS--------HETKWIDARNSAILYLLYGCGL 168 K S +++ + +D V HE + R+ A++ L+ G G+ Sbjct: 146 SLPKLSQEEIVRMDQGEVAQFLDQVESGEDLSKKEKLYHEKNQV--RDLAMMQLMLGTGI 203 Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD----LCPFDLNLN 224 R+SE + L ++ + +RI KG K + V + + Y + P + N Sbjct: 204 RVSECVGLNCSDVDFQNNAIRIHRKGGKEVSIYFSDEVEQGLRAYMEERKSKIPAAGHEN 263 Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284 LF ++ K ++ + +++ + + T H LR S+ T+L GD+ + Sbjct: 264 ---ALFLSLQNKRMSVRTVELMVKKYAQKVTPLKHITPHKLRSSYGTNLYQETGDIYLVA 320 Query: 285 SILGHFRLSTTQ 296 +LGH ++TT+ Sbjct: 321 DVLGHSDVNTTK 332 >gi|308176207|ref|YP_003915613.1| phage integrase family protein [Arthrobacter arilaitensis Re117] gi|307743670|emb|CBT74642.1| phage integrase family protein [Arthrobacter arilaitensis Re117] Length = 360 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 14/185 (7%) Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178 +++ LPR+L + + L + + R+ A+ L+ CGLR E L+L Sbjct: 168 VREPRRLPRSLESDEVIALFQGLRTY----------RDRAMAGLMLYCGLRAGEVLALRI 217 Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGK 236 +++ L + GKG + R VPL V +++ Y L P + L RG Sbjct: 218 RDVDIGGRWLLVLGKGSRERRVPLDVDV-AGVIQTYLLAERPESDEQRLFLVAKGANRGL 276 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 PL + R R G+P H LRH+F + L ++G DL ++ +LGH ++TT Sbjct: 277 PLTAAGLRTIFRYHREISGVP-DGHPHALRHTFGSALAASGVDLSIMRELLGHAHVNTTA 335 Query: 297 IYTNV 301 Y ++ Sbjct: 336 RYIHL 340 >gi|194015373|ref|ZP_03053989.1| site-specific recombinase, phage integrase family protein [Bacillus pumilus ATCC 7061] gi|194012777|gb|EDW22343.1| site-specific recombinase, phage integrase family protein [Bacillus pumilus ATCC 7061] Length = 353 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 79/169 (46%), Gaps = 17/169 (10%) Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIR 198 LL + ++ R+ I+ L RI E LSLT +N+ ST+ K + R Sbjct: 163 LLSAPDQRTFVGFRDYVIMTFLVDSMARIGEILSLTKENVDYASSTVYFSAWDVKTRQGR 222 Query: 199 IVPL----LPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 VPL + +++ ++E D PF +F G+ L F++ + + Sbjct: 223 FVPLERKTMNLIKELLIENEDFESPF---------VFLSNYGEQLETNHFRKQLNRYAEQ 273 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 +G+ H RH+ AT L NGGD+R +Q++LGH + + YT+++ Sbjct: 274 VGITKKVHPHLFRHTGATMYLENGGDIRHLQAMLGHRDMRMVKRYTHLS 322 >gi|258515632|ref|YP_003191854.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] gi|257779337|gb|ACV63231.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] Length = 335 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 61/227 (26%), Positives = 107/227 (47%), Gaps = 11/227 (4%) Query: 66 LSYTEIRAFISKRRTQKIGDR--SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 ++Y IR + +K G++ ++ + +K F +L E+ + LK +N Sbjct: 83 ITYRTIRNNLVLYAIEKWGNQPQTVNMRIRTLKQFFDFLVSEGYLAENPAARVEKLKTAN 142 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 +L ALN+ Q LL + R+ I+ LL GLR+SE L ++ Sbjct: 143 TLIVALNKDQV-----RRLLAVPDKDTLTGFRDYTIMLLLLDTGLRLSEISGLRISDLHF 197 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 ++ +++ GKG K R VPL ++K + EY + + + +F I P+ Sbjct: 198 TENFIKVMGKGAKERTVPLQGKLKKTLREYLQHRGKEPDHDF---VFITIDNNPIKNRTI 254 Query: 244 QRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289 Q + + + G+ + T+ HT RH+FA + NGGD S+++ILGH Sbjct: 255 QDRLDIISKKAGVTEIRTSPHTWRHTFARMYILNGGDAFSLKTILGH 301 >gi|254443000|ref|ZP_05056476.1| integron integrase subfamily, putative [Verrucomicrobiae bacterium DG1235] gi|198257308|gb|EDY81616.1| integron integrase subfamily, putative [Verrucomicrobiae bacterium DG1235] Length = 485 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 41/179 (22%) Query: 162 LLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAI-------LEY 213 L YG GLR+SE L +++ + L + GKG+K R +PL + K + E Sbjct: 287 LQYGTGLRVSELCRLRVKDLDFELGKVLVVGGKGNKDRALPLPKKLAKELEQQLASAREV 346 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-----RQL---------RRYLGLPLS 259 ++ D + LP + K G ++ R+L RR+ LP S Sbjct: 347 FEKDRSDEVAGVYLP--EALERKFSKAGTDWKWFWVWPSRELGVDPRSDVLRRHHVLPRS 404 Query: 260 -----------------TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 ++H LRHSFATHLL +G +LR++Q ++GH + TTQ+Y ++ Sbjct: 405 YQAAISRAASKAEIQKRVSSHALRHSFATHLLDSGINLRTLQELMGHKDIKTTQVYLHL 463 >gi|158339522|ref|YP_001520911.1| tyrosine recombinase XerC [Acaryochloris marina MBIC11017] gi|158309763|gb|ABW31379.1| tyrosine recombinase XerC [Acaryochloris marina MBIC11017] Length = 185 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 3/150 (2%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR-IVPLLPSVRKAILE 212 AR+ A++ LL+ GLR SE + ++ +Q L I GKG R + L S +AI E Sbjct: 12 ARDFAMMTLLWEAGLRRSELVGCDVRHFDSEQKRLSILGKGRNEREWIDLTESGVRAISE 71 Query: 213 YYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS-FA 270 + +L + L + + L R G L+ R +R L + G+ + H +RHS Sbjct: 72 WLELREVYGLTEPLFISLDRANWGSRLSGTSVYRIVRALAKKAGVSENFGPHKIRHSGTT 131 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 T+L GGDLR Q+ H L+T + Y + Sbjct: 132 TYLEMTGGDLRGAQAYSRHANLNTLKFYDD 161 >gi|89147652|gb|ABD62685.1| integrase [uncultured bacterium] Length = 163 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 28/59 (47%), Positives = 41/59 (69%) Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 Q ++ R +G+ + H+LRHSFAT LL +G D+R++Q +LGH +STTQIYT+V Sbjct: 104 IQGALKSALRAVGINRPASCHSLRHSFATQLLESGYDIRTVQELLGHKDVSTTQIYTHV 162 >gi|304393998|ref|ZP_07375922.1| site-specific integrase/recombinase [Ahrensia sp. R2A130] gi|303293973|gb|EFL88349.1| site-specific integrase/recombinase [Ahrensia sp. R2A130] Length = 367 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 73/144 (50%), Gaps = 6/144 (4%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221 L+ GC R+SE + LT + ++I GKGD+ R +P+ ++ + + + P + Sbjct: 189 LVSGC--RLSEIVELTWPQVEWFADQMKITGKGDRTRTIPITAAMGEILKSVHGHDPLHV 246 Query: 222 NLNIQLPLFRG-IRGK--PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278 + G ++G+ P+ + R++R G+ H LRH+ AT LL + G Sbjct: 247 FTYEAMKTRDGRVKGERYPITKSGLKTTWRRMRAASGVK-GLRFHDLRHTAATRLLRSTG 305 Query: 279 DLRSIQSILGHFRLSTTQIYTNVN 302 +LR Q +LGH +STTQ Y +V Sbjct: 306 NLRLAQMLLGHSDISTTQRYAHVQ 329 >gi|115377467|ref|ZP_01464669.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1] gi|310823313|ref|YP_003955671.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1] gi|115365511|gb|EAU64544.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1] gi|309396385|gb|ADO73844.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1] Length = 381 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 23/183 (12%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-----QG-----KGDKIRIVP 201 +D R A++ L GLR E L+L ++ + L I QG KG + R VP Sbjct: 194 LDWRIQAMVLLGGDAGLRSGEILALEWTDVDFRRGQLHIRQSEWQGHVTVPKGGRDRRVP 253 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 + + R A L N +++ P L+R G+P R++ + ++ GLP++ Sbjct: 254 M--TKRLAAL-------LATNRHLKGPRVLYRD-NGQPATRAAVSRWMAKAQKRAGLPVT 303 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRH+F + L G ++IQ + GH LSTTQ Y ++ S D + + D+ Sbjct: 304 RALHVLRHTFCSPLAMRGAPAKAIQELAGHENLSTTQRYMHL-SPAAKDAAISLLDEAAS 362 Query: 320 SIT 322 I+ Sbjct: 363 QIS 365 >gi|150019809|ref|YP_001312063.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] gi|149906274|gb|ABR37107.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] Length = 323 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 57/227 (25%), Positives = 102/227 (44%), Gaps = 25/227 (11%) Query: 85 DRSLKRS-----LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 DR LK + +K+FL Y KRK E + +P + EK+A+ D Sbjct: 78 DRGLKGGTYSTFVVKLKAFLTYCFKRKYLQEFEV----------KIPNVVLEKKAVYTED 127 Query: 140 --NVLLHTSHETKWI--DARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKG 194 N+LL + + D R+ ++ G G R L++ ++I + S L K Sbjct: 128 EINILLTKPNLNTCVIGDYRSYVMIAFFVGTGCRSETILNVRVKDINFEKDSILFSHMKT 187 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 + VP+ +R +LEY + ++NL LF I G ++ + + ++ Sbjct: 188 KRQATVPMSKFLRGELLEYIN----NMNLKHNDLLFPKIDGTQMSYDTMHQNFKNYFKHC 243 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + + +T R++FAT + NGGD+ ++ +L H + TT+ Y N+ Sbjct: 244 NIKMHG-VNTFRNTFATMFIKNGGDIYRLKLLLNHSTIKTTERYINL 289 >gi|332971270|gb|EGK10233.1| TnP I resolvase [Desmospora sp. 8437] Length = 287 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 6/164 (3%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEY 213 R+ + + L GLR+SEA+ L +++ L +Q GKG K R +PL + + I Y Sbjct: 127 RDYTLAFFLAYTGLRVSEAIHLQIKDVNLPARQLVVQFGKGQKRREIPLSTRLVQVIRSY 186 Query: 214 Y-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 D P LF RG+ ++ + + R G+ T H+LRH F T Sbjct: 187 LRDTRPQYRTAERSPYLFVSSRGRQISRKTVYSLLVKYSRQAGVNPEITPHSLRHFFCTR 246 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 L G + ++ I GH ++TT IY + + K+ M+E D+ Sbjct: 247 ALEAGYTIEEVRQIAGHANVNTTLIYAHPSRKS----MLEKIDR 286 >gi|301165214|emb|CBW24785.1| putative bacteriophage integrase [Bacteroides fragilis 638R] Length = 431 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 71/151 (47%), Gaps = 20/151 (13%) Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYY 214 L+GC GL + +LT I MD I + K R+ VPL+ ++ I Y Sbjct: 252 FLFGCFTGLSYIDIKTLTHDKIQRMDFDGEDWIITRRTKTRVSSNVPLMEIAKELIERYK 311 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL- 273 L D P+ P N G ++++Q+ + G+ H RH+FAT + Sbjct: 312 GLAGGDF----VFPM-------PSN-GTCNKHLKQIAKACGISKEIGFHLSRHTFATTVY 359 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 L NGG + ++ ILGH +STTQIY V +K Sbjct: 360 LCNGGTIEALSKILGHKHISTTQIYAEVTNK 390 >gi|223369824|gb|ACM88781.1| integrase [uncultured bacterium] Length = 163 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 41/64 (64%) Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L Q+ ++ R + + + HTLRHSFATHLL +G D+R++Q +LGH + TT I Sbjct: 99 LAESAVQKMVKGAVRRTEIAKNASCHTLRHSFATHLLESGSDIRTVQELLGHNDVRTTMI 158 Query: 298 YTNV 301 YT+V Sbjct: 159 YTHV 162 >gi|188526790|gb|ACD62276.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 39/60 (65%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH STT IYT+V Sbjct: 99 TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDGSTTMIYTHV 158 >gi|215407984|emb|CAS02319.1| integron integrase [uncultured bacterium] gi|215407986|emb|CAS02320.1| integron integrase [uncultured bacterium] gi|215407988|emb|CAS02321.1| integron integrase [uncultured bacterium] gi|215407990|emb|CAS02322.1| integron integrase [uncultured bacterium] gi|215408004|emb|CAS02329.1| integron integrase [uncultured bacterium] gi|215408014|emb|CAS02334.1| integron integrase [uncultured bacterium] gi|215408018|emb|CAS02336.1| integron integrase [uncultured bacterium] gi|215408024|emb|CAS02339.1| integron integrase [uncultured bacterium] gi|215408028|emb|CAS02341.1| integron integrase [uncultured bacterium] gi|215408034|emb|CAS02344.1| integron integrase [uncultured bacterium] Length = 157 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 29/59 (49%), Positives = 39/59 (66%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+ Sbjct: 99 TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 157 >gi|20804051|emb|CAD31628.1| PUTATIVE INTEGRASE/RECOMBINASE PROTEIN [Mesorhizobium loti R7A] Length = 413 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 70/302 (23%), Positives = 125/302 (41%), Gaps = 61/302 (20%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR-QLSYTEIRAFISKRRTQKIGDR 86 ERGL+ T++S++ +R+FL + + T + Y E R G Sbjct: 130 ERGLAASTVESHKLLSRRFLQEVCPAGADGFAALTPEIVIGYVE--------RHALDGSA 181 Query: 87 SLKRSLSGI-KSFLKYLKKR---KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 +++ G+ ++FL+YL + + + ++R + + LP L ++ ++D Sbjct: 182 DSGKAMCGVVRAFLRYLHLKGFISVALADCVPSIRRWRLAG-LPTFLPPQKVQVVLDACD 240 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202 L T+ + R+ A+L L GLR E +L+ +I ++ I GKG + ++PL Sbjct: 241 LTTA-----MGLRDYAVLMALAKLGLRAGEVAALSLDDIDWQLGSVLIHGKGRRQAMMPL 295 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTT 261 V AI+ Y IR G+P +P + ++R L ++G Sbjct: 296 RHDVGAAIVAY-------------------IRHGRPASP-CRRLFLRMLAPHVGFASGCA 335 Query: 262 ---------------------AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 AH RHS AT LL +G I +L H + +T+IY Sbjct: 336 ITMIAKEALERAGIHGYAHHGAHLFRHSLATDLLRSGASFAEIGQLLRHRSIDSTRIYAK 395 Query: 301 VN 302 ++ Sbjct: 396 LD 397 >gi|253563520|ref|ZP_04840977.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|251947296|gb|EES87578.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|301162178|emb|CBW21723.1| putative phage integrase protein [Bacteroides fragilis 638R] Length = 330 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 69/283 (24%), Positives = 123/283 (43%), Gaps = 36/283 (12%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS----KRRTQKIGD 85 G S+ TL Y + L+ L+ I ++ T+IR ++S + ++ K+ Sbjct: 67 GCSEKTLTYYRNTIERLLVSLSL---------AICHITTTDIRTYLSNYQEEHQSSKVTI 117 Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 +++R S SF +L+ +S + + +K + + L+++Q L D Sbjct: 118 DNMRRIFS---SFFAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQLRD------ 168 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 S TK R+ AI+ L G+R+ E + L ++I + + GKG+K R+V Sbjct: 169 SCTTK----RDLAIIDFLSSTGIRVGELVKLNREDIDFHERQCVVFGKGNKERVVYFNAR 224 Query: 206 VRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 + + +Y + D L +++ P R L + IR+L L +P Sbjct: 225 TKLHLQQYLNGRTDDNPALFVSLHSPHTR------LTISGVEVRIRKLGHTLSMP-KVHP 277 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 H R + AT + G + +Q +LGH R+ TT Y VN N Sbjct: 278 HKFRRTLATMAIDKGMPIEQVQRLLGHVRIDTTLHYAIVNQNN 320 >gi|218462165|ref|ZP_03502256.1| site-specific tyrosine recombinase XerD [Rhizobium etli Kim 5] Length = 191 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 87/190 (45%), Gaps = 16/190 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYE---CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 +++L+ + ERG + TLQSYE D R FL + E ++ ++ A++ Sbjct: 10 ESFLEMMSAERGAAVNTLQSYERDLDDIRSFLNGRSIRLTEAVS---------ADLSAYL 60 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 + +Q S R L+ ++ F K+L I T+ + KK LP+ + ++ Sbjct: 61 ASLASQGFKPSSQARRLAAMRQFYKFLYAEGIRTDDPTGVLDAPKKGRPLPKTMGVEEVG 120 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLL--YGCGLRISEALSLTPQNIMDDQST-LRIQG 192 L+ R + L Y G+R+SE +SL P ++D + L I+G Sbjct: 121 RLLSQAQAEADDPAPGQLQRLRMLALLELLYATGMRVSELVSL-PARVLDQEGRFLMIRG 179 Query: 193 KGDKIRIVPL 202 KG+K R+VPL Sbjct: 180 KGNKERLVPL 189 >gi|110597667|ref|ZP_01385952.1| Site-specific recombinase XerD-like [Chlorobium ferrooxidans DSM 13031] gi|110340787|gb|EAT59264.1| Site-specific recombinase XerD-like [Chlorobium ferrooxidans DSM 13031] Length = 86 Score = 60.1 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 26/44 (59%), Positives = 34/44 (77%) Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 HT RHS+ATHLL G D+R+IQ ++GH +STT IYT+V +K G Sbjct: 25 HTFRHSYATHLLEAGYDIRTIQELMGHKDVSTTMIYTHVLNKGG 68 >gi|89147518|gb|ABD62619.1| integrase [uncultured bacterium] Length = 163 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 28/59 (47%), Positives = 39/59 (66%) Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 QR +++ G+ + HTLRHSFAT LL G D+R++Q +LGH +STT IYT+V Sbjct: 104 LQRAMKRATEQAGIARPVSVHTLRHSFATRLLHAGYDIRTVQELLGHADVSTTMIYTHV 162 >gi|167761886|ref|ZP_02434013.1| hypothetical protein BACSTE_00229 [Bacteroides stercoris ATCC 43183] gi|167700256|gb|EDS16835.1| hypothetical protein BACSTE_00229 [Bacteroides stercoris ATCC 43183] Length = 330 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 70/283 (24%), Positives = 123/283 (43%), Gaps = 36/283 (12%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS----KRRTQKIGD 85 G S TL Y + L+ L+ I ++ T+IR ++S + ++ K+ Sbjct: 67 GCSDKTLAYYRNTIERLLVTLSL---------AICHITTTDIRTYLSDYQEEHQSSKVTI 117 Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 +++R S SF +L+ +S + + +K + + L+++Q L D Sbjct: 118 DNMRRIFS---SFFAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQLRD------ 168 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 S TK R+ AI+ L G+R+ E + L ++I + + GKG+K RIV Sbjct: 169 SCTTK----RDLAIIDFLSSTGIRVGELVKLNREDIDFHERQCVVFGKGNKERIVYFNAR 224 Query: 206 VRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 + + +Y + D L +++ P R L + IR+L + L +P Sbjct: 225 TKLHLQQYLNGRTDDNPALFVSLHSPHTR------LTISGVEIRIRKLGQSLSMP-KVHP 277 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 H R + AT + G + +Q +LGH R+ TT Y VN N Sbjct: 278 HKFRRTLATMAIDKGMPIEQVQRLLGHVRIDTTLHYAIVNQNN 320 >gi|291563477|emb|CBL42293.1| Site-specific recombinase XerD [butyrate-producing bacterium SS3/4] Length = 350 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 57/227 (25%), Positives = 104/227 (45%), Gaps = 23/227 (10%) Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL-VDNV-- 141 +R L R +S ++SF Y + ++ ++ +R +P+ L+EK+ + L +D V Sbjct: 109 ERGLMRKVSSLRSFYSYFFRNELIEKNPAALVR-------MPK-LHEKEIIRLEIDEVAK 160 Query: 142 LLHTSHETKWI-----------DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 LL E + R+ A++ LL G G+R+SE + L +I D R+ Sbjct: 161 LLDEVEEGDKLTEKQKLYHERTKVRDLAMMSLLLGTGIRVSECVGLNINDIDLDTCGARV 220 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 KG K ++ VR + +Y D D + LF ++ K +N + +++ Sbjct: 221 YRKGGKESVIYFSDEVRDVLEDYLDEREMIDAVPGNEDALFLSMQRKRINVRSVENLVKK 280 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + + T H LR ++ T L GD+ + S+LGH ++TT+ Sbjct: 281 YAKLVTPLKKITPHKLRSTYGTSLYRETGDIYLVASVLGHNDVNTTR 327 >gi|218902477|ref|YP_002450311.1| integrase/recombinase [Bacillus cereus AH820] gi|218540144|gb|ACK92542.1| integrase/recombinase [Bacillus cereus AH820] Length = 306 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 73/145 (50%), Gaps = 2/145 (1%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ AI+ LL G+R+ E +++ ++I ++ + GK K + +P+ + K I E+ Sbjct: 140 RDHAIIVLLLSTGIRLGELVNIQWKDIDLVNRSVVLFGKARKQQSIPITDKLTKEICEWR 199 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHL 273 +L +I LF GK L+P + ++L + + + + HT RHSFA Sbjct: 200 IFVEKELG-SIPQYLFTSREGKQLSPNAVKLIFQRLSKVMNFKDVRLSCHTFRHSFAHRC 258 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIY 298 + G D+ ++Q +L H L T+ Y Sbjct: 259 IMQGMDVFTLQKLLRHSNLRMTERY 283 >gi|51597440|ref|YP_071631.1| phage integrase/recombinase [Yersinia pseudotuberculosis IP 32953] gi|51590722|emb|CAH22367.1| Possible phage integrase/recombinase [Yersinia pseudotuberculosis IP 32953] Length = 327 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 19/149 (12%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211 +D N + L G R EA+ L ++I+D++ T + K K R VP+ V Sbjct: 177 LDGDNRRVAILCLSTGARWGEAIKLRTEHIIDNRITF-VATKNGKQRTVPISSDV----- 230 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 + DL L + +F++ ++ ++ LP H LRH+FAT Sbjct: 231 -FNDLTAMKSGLLFNDAAYL----------IFRQKLKSVK--TDLPQGQATHVLRHTFAT 277 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 H + NGG++ ++Q ILGH + T +Y + Sbjct: 278 HFMINGGNIITLQRILGHSTIQQTMLYAH 306 >gi|296269753|ref|YP_003652385.1| integrase family protein [Thermobispora bispora DSM 43833] gi|296092540|gb|ADG88492.1| integrase family protein [Thermobispora bispora DSM 43833] Length = 364 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 53/154 (34%), Positives = 76/154 (49%), Gaps = 12/154 (7%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSVRKAI 210 + R++ I+ LL G R+SE + ++ + RI GKG K R VPL V +A+ Sbjct: 175 EVRDALIVLLLTTVGPRVSELVRANVEDFYTNNGIRYWRIFGKGGKTRDVPLPREVAEAL 234 Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQLRRYLGLP---LSTTAHTLR 266 Y + + L RG+ L G Q I R LRR P S T H LR Sbjct: 235 DAYLAVR----KGGDEKALLLSWRGRRLARGDVQAVIDRVLRRVE--PERRRSVTPHGLR 288 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 H+ ATHLL++G D+ +++ +LGH LST Y + Sbjct: 289 HTTATHLLADGTDMDAVRRVLGHGDLSTLGRYRD 322 >gi|15612006|ref|NP_223658.1| integrase/recombinase (XERCD family) [Helicobacter pylori J99] gi|4155519|gb|AAD06517.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Helicobacter pylori J99] Length = 331 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 64/227 (28%), Positives = 105/227 (46%), Gaps = 27/227 (11%) Query: 95 IKSFLKYL-KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153 ++ F YL +KR+ + + N+ K SLPR LN+K + + +L + + + Sbjct: 100 LRQFFDYLDRKRRYGFDFTLKNLAFAKTKESLPRHLNDKDLKSFLKTLLDYKPATS--FE 157 Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDK-----IRIVPLLPSV 206 RN IL ++ GLR E L++ ++I ++ ++ IQGKG K I+ L PS+ Sbjct: 158 KRNKCILLIVILGGLRKCEVLNIELKHIQVEEQNYSILIQGKGRKERKAYIKKSLLEPSL 217 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN--------PGVFQRYIRQLRRYLGLPL 258 I + Y L F+ LF+ + K N P +F+ + Q++ Y Sbjct: 218 NAWISDDYRLKYFN-----GAYLFKKDKQKSQNSLTLYNFIPLIFK--LAQIKHYK--QY 268 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 T H RHSFAT + DL LGH L +T+IY + ++ Sbjct: 269 GTGLHLFRHSFATLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEH 315 >gi|215408012|emb|CAS02333.1| integron integrase [uncultured bacterium] Length = 157 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 29/59 (49%), Positives = 39/59 (66%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+ Sbjct: 99 TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 157 >gi|194439346|ref|ZP_03071424.1| integrase [Escherichia coli 101-1] gi|194421708|gb|EDX37717.1| integrase [Escherichia coli 101-1] gi|323978493|gb|EGB73576.1| phage integrase [Escherichia coli TW10509] Length = 329 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 68/289 (23%), Positives = 120/289 (41%), Gaps = 37/289 (12%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT-----IRQLSYTEIRA 73 + WL+ +R LS L +E R T K I+ + Q++ + A Sbjct: 49 KEWLEKPTEQRHLSDLLPLWWELGGRNKPYANGVLTRLKKIIKEMNDPRVSQINARFMAA 108 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKSNSLPRALNEK 132 + S R + + + +++R S + L + E+ + + +LK+ + L + Sbjct: 109 YRSSRLSLGVKESTVRRDESDLGGMFTLLANAGEFHGENPLRALPSLKRKSPEMTYLTTE 168 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + L+D V DAR +L L G R EA +L ++I++++ T + Sbjct: 169 EIAKLLDAVSG---------DARRITLLCL--STGARWGEAKNLRAEHIINNRVTFN-KT 216 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 K K+RI+P+ V I FD+N + R + KP Sbjct: 217 KNGKVRIIPVSDEVVSEIKTKKSGLLFDVNYEEYRKVLRSV--KP--------------- 259 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 LP H LRH+FA H + NGG++ ++Q I+GH + T Y ++ Sbjct: 260 --DLPKGQAVHVLRHTFAAHFMINGGNILTLQRIMGHATIQQTMTYAHL 306 >gi|317505696|ref|ZP_07963590.1| integrase [Prevotella salivae DSM 15606] gi|315663187|gb|EFV02960.1| integrase [Prevotella salivae DSM 15606] Length = 406 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 77/317 (24%), Positives = 143/317 (45%), Gaps = 49/317 (15%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 + + I+R L L++Y+ L L Y ++K + + LS + +AFI Sbjct: 123 ERVGIDRALKTFKLRTYQ------LSLLREYVQKKHRVSDV-PLSQLD-KAFIEGFEYYL 174 Query: 83 IGDRSLKRS-----LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 DR LKRS +S +++ ++ K+ + L + ++ PR++ +++ + Sbjct: 175 TIDRKLKRSSISSTVSTLQTIVRMAVKKGVLDFYPFLGY-SYERPKGEPRSITQEELEHI 233 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGD 195 +D E KW + R L++ + C GL IS+ +L +NI+ ++ L I+G+ Sbjct: 234 IDL-------EIKWENYRIVRDLFV-FSCFSGLAISDVRNLREENIVLEEGELCIKGRRM 285 Query: 196 KIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL----NPGVFQRYIR 248 K + V +LP + + Y RGIR + +F + Sbjct: 286 KTKTPYRVQVLPPALEIMNRY-----------------RGIRAGFVFDVPTTDIFLNGMH 328 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 ++R +G+ T H RH+FA+ + LS G + ++ +LGH L TTQIY V+S+ Sbjct: 329 HIQRNIGMKTPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAVVSSERIH 388 Query: 308 DWMMEIYDQTHPSITQK 324 M ++ + + T K Sbjct: 389 RDMQKVQQRIQDTFTLK 405 >gi|152987232|ref|YP_001350376.1| prophage CP-933T integrase [Pseudomonas aeruginosa PA7] gi|150962390|gb|ABR84415.1| integrase for prophage CP-933T [Pseudomonas aeruginosa PA7] Length = 371 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 28/224 (12%) Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + +G ++L L +++ L++ K T E+ + +R LK+ + L+ +Q L+ Sbjct: 134 AKPVGAKTLNHELVHLRAMFNELERLEKWTGENPLAKVRALKQDETEMGYLSREQIPLLL 193 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + H S T + AR + G R SEA++LTP + D + ++ K + R Sbjct: 194 AKLDQHPS--TVGMVAR------VCLATGARWSEAMNLTPLQVRDGRIHF-VRTKSARNR 244 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 VP+ ++K++ P+ + + F+ + +L L LP Sbjct: 245 AVPISAELQKSL---EGALPWRSSYSATYK-------------AFELAVAELD--LQLPK 286 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 H LRH+FA+H + NGGD+ ++Q +LGH L T Y + + Sbjct: 287 GQLTHVLRHTFASHYMMNGGDILTLQRVLGHATLQMTMRYAHFS 330 >gi|325676755|ref|ZP_08156428.1| phage integrase family site-specific recombinase [Rhodococcus equi ATCC 33707] gi|325552303|gb|EGD21992.1| phage integrase family site-specific recombinase [Rhodococcus equi ATCC 33707] Length = 346 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 64/314 (20%), Positives = 122/314 (38%), Gaps = 35/314 (11%) Query: 19 QNWLQNLEIERGLSKL---TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR-AF 74 + W + R +K TL++Y D FL+ T ++ ++ ++ ++ AF Sbjct: 14 EAWFAEFLLHRSTAKPSPHTLKAYRQDFAAISGFLSEQTGVPVSALSVEAITKPSMQQAF 73 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 S T ++ S++R S + YL + + + K +P+AL Sbjct: 74 ASFAATHEVA--SIRRCWSTWNTLCDYLFSIDTIVANPMSAVLRPKAPKRIPKALPADAV 131 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL-------TPQNIMDDQST 187 L+ + + + R+ AI+ G+R SE +++ P Sbjct: 132 TRLIQTLQEDDTDGVRPWGERDFAIILTALLTGMRSSELIAVDLGDVRSAPDPSGGSARV 191 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYD-----------------LCPFDLNLNIQLPLF 230 +R++GKG K R+ P++ + Y + P+ + PLF Sbjct: 192 IRVRGKGSKERVATAEPALVATLTGYLESRIARFPETTKRRVPSGATPWQ-HFRSTDPLF 250 Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGL----PLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286 G G + G Q + + R G+ H RH+FAT++ + ++ + Sbjct: 251 VGADGTRITRGTLQYRVLRAYRRAGINGERAKGALTHQFRHTFATNMADENVSIFTLMRM 310 Query: 287 LGHFRLSTTQIYTN 300 LGH ++TTQ+YT Sbjct: 311 LGHESMNTTQVYTE 324 >gi|229051823|ref|ZP_04195272.1| Integrase-recombinase [Bacillus cereus AH676] gi|229125217|ref|ZP_04254335.1| Integrase-recombinase [Bacillus cereus 95/8201] gi|228658243|gb|EEL13965.1| Integrase-recombinase [Bacillus cereus 95/8201] gi|228721530|gb|EEL73025.1| Integrase-recombinase [Bacillus cereus AH676] Length = 390 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 68/153 (44%), Gaps = 10/153 (6%) Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 N IL L G RI E + +++ D + L++ GKGDK+R + + + + I E Sbjct: 218 NYTILLALASTGARIQELCTARVKDLHYDGKYWLKVTGKGDKVRELFIPEHLFQCISEMR 277 Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266 F LN + P+F RG NP + + + L TAHT R Sbjct: 278 RRRGFQTVLNRGDESPVFINQRGNFYNPKTLSNQVTDMIKKTNLDFLKYRENPVTAHTFR 337 Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298 H+FA + G DL + LGH + TT+IY Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370 >gi|89147336|gb|ABD62530.1| integrase [uncultured bacterium] Length = 163 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 32/42 (76%) Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T HT RHSFATHLL G D+R++Q +LGH + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGHDIRTVQELLGHTDVKTTQIYTHV 162 >gi|296163718|ref|ZP_06846432.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295886039|gb|EFG65943.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 335 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 65/242 (26%), Positives = 97/242 (40%), Gaps = 42/242 (17%) Query: 95 IKSFLKYLKKRKITTESNILNMRNLK----KSNSLPRALNEKQALTLVDNVL-------- 142 I +FLKYL+ TT N + RN + +S + AL E AL + VL Sbjct: 68 ILAFLKYLE----TTRHNAIRSRNARLAAIRSFAHYAALQEPSALPGLQRVLAIPMKRFD 123 Query: 143 ---------------LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQS 186 L W R+ +L LY G R+SE +++ ++ ++D + Sbjct: 124 RPMVGFLSREEMQCILAAPAANSWCGQRDQVMLATLYNTGARVSELIAMRVRDVVLDRGA 183 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-PGVFQR 245 + GKG K R VPL K I + +N + LF G + GV R Sbjct: 184 CANLHGKGRKERTVPLWAGTAKQIRRWLH----QINPDPDQWLFPNRAGGQMTRSGVTDR 239 Query: 246 Y-IRQLRRYLGLPL----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + + P S T H +RH+ A H+L G D+ I LGH +TT +Y Sbjct: 240 LKVAATGASIRCPQLKTRSVTPHIVRHATAMHMLQAGVDVTLIALWLGHESAATTHMYIE 299 Query: 301 VN 302 + Sbjct: 300 AD 301 >gi|89147328|gb|ABD62526.1| integrase [uncultured bacterium] gi|89147330|gb|ABD62527.1| integrase [uncultured bacterium] gi|89147342|gb|ABD62533.1| integrase [uncultured bacterium] Length = 163 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 32/42 (76%) Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T HT RHSFATHLL G D+R++Q +LGH + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGHDIRTVQELLGHTDVKTTQIYTHV 162 >gi|301066463|ref|YP_003788486.1| site-specific recombinase XerD [Lactobacillus casei str. Zhang] gi|300438870|gb|ADK18636.1| Site-specific recombinase XerD [Lactobacillus casei str. Zhang] Length = 370 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 63/304 (20%), Positives = 127/304 (41%), Gaps = 58/304 (19%) Query: 56 EKITIQTIRQLSYTEIRAFIS--------KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI 107 + + + + LS + +AF++ +++ RS+ L GIK+ ++L + Sbjct: 64 QTVPLTVLEHLSLRDAQAFMAYLLERPSKTHHNKRMTRRSVALRLVGIKALYRFLTEESE 123 Query: 108 TTES-------NILNMRNLKKSNSLPRALNEK-QALTLVDNVLLHTSHETKWID------ 153 N+ N LK N K Q + VD + +W+D Sbjct: 124 PHADGEPYFYRNVWNKVKLKTHTETASYRNHKLQEMLFVDG---EDAKFLQWLDQSYAQQ 180 Query: 154 -------------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG---DKI 197 RN A++ LL+G G+R+SE +++ +++ D+ T+++ KG D++ Sbjct: 181 LPAKPRRYFEATKVRNLAMIALLFGSGVRVSELVNMNLEDLNMDRHTVQVVRKGNFQDRV 240 Query: 198 RIVPLL-PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-------PGVFQRYIRQ 249 + P V+ + + + + + PLF + G+ +N F+RY Sbjct: 241 NFADWIDPYVQAYLTQRAAIIGYQKPTS---PLFVTVVGQKINRIRQNTIEAFFKRYTTD 297 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 R +T H RH+ T++ + D++ + LG S T +Y N++ K+G + Sbjct: 298 YGR------RSTPHKARHTLGTNIYTVTKDVQQVADQLGQTTTSATDLYINLSDKSGKEA 351 Query: 310 MMEI 313 + E+ Sbjct: 352 LREV 355 >gi|226312180|ref|YP_002772074.1| site-specific tyrosine recombinase XerS [Brevibacillus brevis NBRC 100599] gi|226095128|dbj|BAH43570.1| putative recombinase [Brevibacillus brevis NBRC 100599] Length = 399 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 65/258 (25%), Positives = 111/258 (43%), Gaps = 36/258 (13%) Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKK------------RKITT--ESNILNMRNLKK 121 +K ++ DR++ R +S +KS YL R + E I + L + Sbjct: 133 TKSAKKEYSDRTISRKISSLKSLFHYLSALAEDENGESYLTRNVLAKIELEITELTPLAR 192 Query: 122 SNSL-PRALNEKQALTLVDNV----LLHTSHETK-----WIDARNSAILYLLYGCGLRIS 171 ++++ + L + + VD V L H E K R++A++ ++ G R+S Sbjct: 193 AHAIRAKILIDDEIYQFVDFVYNGYLAHCDTEKKKQYHMQNRDRDTALIAMILSGGFRVS 252 Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLF 230 E +SL +I+ +++ L++ KG K P K L Y N Q +F Sbjct: 253 EIVSLDLSDIIMEKNQLKLIRKGKK-EDAPFFSDWGKEHLAKYLQLRDKYNPEPQEDAVF 311 Query: 231 RGIRGKPLNPG-------VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283 + P NP Q+ +++ + G+P + H LRHSFAT L D + Sbjct: 312 LAV--SPANPNGHRIEVRSVQKLVKKYAKAFGIP-DLSVHKLRHSFATQFLRLNPDPHQL 368 Query: 284 QSILGHFRLSTTQIYTNV 301 Q+ LGH ++ TT Y +V Sbjct: 369 QAQLGHSKIETTMQYAHV 386 >gi|217963765|ref|YP_002349443.1| integrase/recombinase [Listeria monocytogenes HCC23] gi|217333035|gb|ACK38829.1| integrase/recombinase, putative [Listeria monocytogenes HCC23] gi|307571661|emb|CAR84840.1| integrase/recombinase, putative [Listeria monocytogenes L99] Length = 314 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 5/162 (3%) Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 H + + R+ I LL G+RISEA+ + Q+I D + ++ K K RIV + Sbjct: 143 HFKKKETFSSYRDLVIFQLLLDTGIRISEAVGINIQDIHSD-YIIVVESKNLKQRIVYIS 201 Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 +R+ + Y + NL+ +F P N FQ+ +R+ R G+ + H Sbjct: 202 KRMREKLTSYLKIRG---NLS-HTKVFINRDQLPYNKNTFQQNLREARVLCGIQKQVSPH 257 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 R ++A + + +G D S+ ++LGH L T+ Y + K+ Sbjct: 258 VCRRTYAKNAILSGMDAFSLATLLGHSSLEVTKRYVQIWGKD 299 >gi|23011550|ref|ZP_00051877.1| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1] Length = 131 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 51/85 (60%), Gaps = 1/85 (1%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 W + L ER ++ T+++YE D RQFL L + TI + L ++R F++ RR Sbjct: 27 GWREALARERRMAANTVEAYERDLRQFLTHLDARSGTP-TIPGLIALKPRDLRGFMAARR 85 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKK 104 + +G R+L R L+G++SF ++L++ Sbjct: 86 AEGVGGRTLMRMLAGLRSFARFLER 110 >gi|304439581|ref|ZP_07399486.1| phage integrase family site-specific recombinase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371960|gb|EFM25561.1| phage integrase family site-specific recombinase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 309 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 66/234 (28%), Positives = 111/234 (47%), Gaps = 31/234 (13%) Query: 86 RSLKRSLSG----IKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTLVDN 140 R LK +G + ++ +L +R+I E+ I+ + KK ++ PR EK++L + + Sbjct: 61 RDLKGGYNGYRKRLNTYFNFLIEREIIEENPIVKLGIKRKKEDAEPRPA-EKESLKKILS 119 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD-QSTLRIQ---GKGDK 196 +L S + + R+ + L G+R +EA+ + +N+ D LRI GK +K Sbjct: 120 LLDLNS----YTEFRDYVFILLTLDTGIRPAEAVQVY-ENLFDYYNKDLRITPSIGKCNK 174 Query: 197 IRIVPLLPSVRKAILEYYDLCP---FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 RI+PL V K + +++ F N LF GK L+ QR + RY Sbjct: 175 SRILPLSDGVIKYVKRLFEINKRNNFKSN-----NLFLSDSGKELSTTAIQR---KFARY 226 Query: 254 LGL-----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + T + LRH FAT L NGG++ +Q ++GH + T+ Y +N Sbjct: 227 CDILELCGEDRITPYQLRHYFATTYLENGGNIVYLQYLMGHSDIKMTKKYLKIN 280 >gi|322420382|ref|YP_004199605.1| integrase family protein [Geobacter sp. M18] gi|320126769|gb|ADW14329.1| integrase family protein [Geobacter sp. M18] Length = 334 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 94/188 (50%), Gaps = 21/188 (11%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA-ILYLLYGCGLRISEALSLTP 178 K+S R L++++ L +V ++L T H++K +A ++ +L G R+SE L+L Sbjct: 150 KESKGRIRVLSKEEELAVV-SLLRDTDHKSKRSYYPEAADLVEVLVDTGCRLSEILNLKY 208 Query: 179 QNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYD---LCPFDLNLNIQLPLFRGIR 234 ++I D + + I KGDK R +P+ V +L + L PF ++++ + +R Sbjct: 209 EDINWDTNLITIWVNKGDKPRSIPMTKRVGGILLARQEGNWLKPFSIDIDQAQKAWSWVR 268 Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 + + Y R+ H+LRH+ AT LL G DL +++ LGH + Sbjct: 269 KR-----MMLEYDREF----------VMHSLRHTCATRLLDRGIDLYTVKEWLGHSTIQV 313 Query: 295 TQIYTNVN 302 T+ Y ++N Sbjct: 314 TERYAHLN 321 >gi|228931327|ref|ZP_04094256.1| Integrase-recombinase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228828330|gb|EEM74036.1| Integrase-recombinase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 390 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 68/153 (44%), Gaps = 10/153 (6%) Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 N IL L G RI E + +++ D + L++ GKGDK+R + + + + I E Sbjct: 218 NYTILLALASTGARIQELCTARVKDLHYDGKYWLKVTGKGDKVRELFIPEHLFQCISEMR 277 Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266 F LN + P+F RG NP + + + L TAHT R Sbjct: 278 RRRGFQTVLNRGDESPVFINQRGNFYNPKTLSNQVTDMIKKTNLEFLQYRENPVTAHTFR 337 Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298 H+FA + G DL + LGH + TT+IY Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370 >gi|118591862|ref|ZP_01549257.1| integrase/recombinase [Stappia aggregata IAM 12614] gi|118435505|gb|EAV42151.1| integrase/recombinase [Stappia aggregata IAM 12614] Length = 85 Score = 59.7 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 27/50 (54%), Positives = 35/50 (70%) Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 GL + HTLRHSFATHLL +G D+R IQ +LGH +L TT +Y V+ + Sbjct: 13 GLRKRVSPHTLRHSFATHLLEDGTDIRVIQVLLGHSKLETTALYAKVSPR 62 >gi|91790655|ref|YP_551607.1| phage integrase [Polaromonas sp. JS666] gi|91699880|gb|ABE46709.1| phage integrase [Polaromonas sp. JS666] Length = 291 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 57/151 (37%), Positives = 74/151 (49%), Gaps = 12/151 (7%) Query: 160 LYLLYGCGLRISEALSLTPQNI--MDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDL 216 L LY GLR+SE L +I D+ +R+ GKG R L PS+ A+L Y Sbjct: 125 LQTLYATGLRVSEVGRLRVSDIDSAADRMCVRVNAGKGGADRYSILSPSL-LALLRLY-- 181 Query: 217 C-PFDLNLNIQLPLFR---GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 C + N LF G RG + QR + R G+ S HTLRH FATH Sbjct: 182 CQTYAPQRNPGKWLFANGTGERGVGIE--SLQRAYQAARHCAGITKSGGTHTLRHCFATH 239 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 LL +G DL +I +LGH +STT Y ++ S Sbjct: 240 LLESGVDLYTISRLLGHRHISTTSRYLHLIS 270 >gi|89147524|gb|ABD62622.1| integrase [uncultured bacterium] Length = 163 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 27/47 (57%), Positives = 35/47 (74%) Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G+ + HTLRHSFATHLL G D+R++Q +LGH +STT IYT+V Sbjct: 116 GIIKPVSCHTLRHSFATHLLQTGQDIRTVQELLGHADVSTTMIYTHV 162 >gi|332799019|ref|YP_004460518.1| integrase family protein [Tepidanaerobacter sp. Re1] gi|332696754|gb|AEE91211.1| integrase family protein [Tepidanaerobacter sp. Re1] Length = 297 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 72/289 (24%), Positives = 118/289 (40%), Gaps = 39/289 (13%) Query: 29 RGLSKLTLQSYECDTRQFLIFL--AFYTEEKITIQTIRQLS---YTEIRAFISKRRTQKI 83 +GL++ TLQ YE + F A +E++ + + S + F S+R+ Sbjct: 16 QGLAERTLQDYEYNIGLFFKAYPNALKDDERLEMAVLEYFSSIGHLAPATFNSRRKN--- 72 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 + +F +LK K E N + +K LPRA +E+ TL LL Sbjct: 73 -----------LNTFFLWLKDEKGIIEQNPICHIKRRKEEKLPRASDEE---TLAK--LL 116 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR---IV 200 T + R+ A++ L G+R EA L ++ + + I + K R I+ Sbjct: 117 KAPDITTFAGLRDYALIVLTLDTGIRPGEAFGLLKKDFDLETGQIEIPAEVAKTRTRRIL 176 Query: 201 PLLPSVRKAILEY----YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 P+LP AI E + P +P+F G L + R + + +G Sbjct: 177 PILPQTVLAIAELIQSRHKYWP------DTVPVFCTENGGKLGKNQWGRRMIEYGEKIGK 230 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 T + LRHSFA L N G +Q +LGH + T+ Y ++ + Sbjct: 231 --KVTPYQLRHSFALLFLRNKGSAFHLQQMLGHTTMEMTEKYVYLSKSD 277 >gi|318604128|emb|CBY25626.1| putative bacteriophage integrase [Yersinia enterocolitica subsp. palearctica Y11] Length = 351 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 21/145 (14%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 ++ + G R SEA SL+ I D+ T I+ KG K R +P+ + K+I + Sbjct: 197 VVKICLATGARWSEAESLSLSQITKDRITF-IKTKGKKNRTIPVSEELIKSIPKKES--- 252 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNG 277 G+PL + + L+R + LP +H LRH+FA+H + G Sbjct: 253 ----------------GEPLFVSCYSAFRTALKRAKINLPAGQLSHVLRHTFASHFMMAG 296 Query: 278 GDLRSIQSILGHFRLSTTQIYTNVN 302 G++ +Q ILGH + T Y++ + Sbjct: 297 GNILVLQRILGHTDIKMTMRYSHFS 321 >gi|160874839|ref|YP_001554155.1| integrase family protein [Shewanella baltica OS195] gi|160860361|gb|ABX48895.1| integrase family protein [Shewanella baltica OS195] Length = 210 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 52/198 (26%), Positives = 96/198 (48%), Gaps = 22/198 (11%) Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173 L+ + K+ + LP+ L+ + + +L H + + A+L L YGCGLR+SE Sbjct: 10 LSNKAPKRPHKLPQLLSCQD----IAALLCHCQ------NLKQRAMLALCYGCGLRVSEL 59 Query: 174 LSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFR 231 + +I + L++ QGKG R+V + P++ + +Y+ P + LF Sbjct: 60 THIKVADIDGQRQLLKVCQGKGAYDRLVIISPTLLTLLRQYWRAYHPVEW-------LFA 112 Query: 232 GIRGK---PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288 PL+ F++ + + R + + H+LRH++ATH L G L +Q+ LG Sbjct: 113 STYHDVVYPLHESTFRKALAKAARLASITKPCSPHSLRHAYATHQLQAGMPLHQLQAQLG 172 Query: 289 HFRLSTTQIYTNVNSKNG 306 H + +T+ Y + + + G Sbjct: 173 HHSIKSTERYLHWSPELG 190 >gi|89147464|gb|ABD62592.1| integrase [uncultured bacterium] Length = 163 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 25/41 (60%), Positives = 33/41 (80%) Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T H LRHSFATHLL +G D+R++Q +LGH + TT+IYT+V Sbjct: 122 TCHVLRHSFATHLLEDGRDIRTVQELLGHGDVKTTEIYTHV 162 >gi|303242645|ref|ZP_07329119.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302589784|gb|EFL59558.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 418 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 77/296 (26%), Positives = 123/296 (41%), Gaps = 24/296 (8%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLI-FLAFYTEEKITIQTIRQLSYTEIRAF 74 K Q +L+ E L++ TL+ + R +L F F + IT+ L E AF Sbjct: 110 KVSQEYLEFCRNELLLAEKTLE----NKRLYLYDFCKFLNSKNITLN---DLCIEETEAF 162 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM--RNLKKSNSLPRALNEK 132 + R+LS FL+Y K + + + + N +K LP E Sbjct: 163 FISMNYTLASRHNAARNLS---LFLRYAYDNKYSQKDTSIYILPDNYRKDCKLPTTYEED 219 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-Q 191 + + VL+ + I R+ IL L GLR + +L +I D++ +RI Q Sbjct: 220 E----IKEVLISVERASS-IGKRDYLILLLATEYGLRAKDITNLCFDDIDWDRNVIRINQ 274 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 K D PLL S+ AI++Y P I + +GKPL+ + + Sbjct: 275 HKTDFPVEFPLLASIGNAIIDYLKYGRPLSDAPQIIVSAENANKGKPLSSPTIHSVVTKY 334 Query: 251 RRYLGLP----LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + G+ H +RHS AT+LL + I +++GH R TT Y +V+ Sbjct: 335 MKRAGIKNWQNKKHGPHAMRHSLATNLLKKNISMPIISTVMGHQRTETTSTYISVD 390 >gi|150400384|ref|YP_001324151.1| phage integrase family protein [Methanococcus vannielii SB] gi|150013087|gb|ABR55539.1| phage integrase family protein [Methanococcus vannielii SB] Length = 322 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 66/290 (22%), Positives = 126/290 (43%), Gaps = 15/290 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + W+ ER + + E D + +FL F E++ + + +R F Sbjct: 24 KKWIDKYVSEREFDGIKESTIEGDLNRLKVFLNF-GYERLEKEPNDMENSDFVRFFNYLE 82 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 +K+ + KR +K F K ++ + N R K+ +S + ++ Sbjct: 83 NERKLSRNTQKRYYDVLKVFYKLMRLENLNDFKNESEDR--KRFSSFEIKHYDSLGADIL 140 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKI 197 + +L+ R++ I+ L+ G R+SEAL+L + ++ R++ KG + Sbjct: 141 NLILMEVLESRSTTKVRDAMIIRFLWDTGARVSEALNLKYGDSDLEKGEFRLRDTKGKEE 200 Query: 198 RIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLN----PGVFQRYIRQLRR 252 RIV + K L++ + C ++ N LF+ RG+PL VF+ +++L++ Sbjct: 201 RIV----TCSKDTLDFVNYCLKANIKKNPGDNLFQTYRGEPLKRNRPSDVFRNAVKELKK 256 Query: 253 YLGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 L + H+LRH A LL G + ++ LGH + TT Y++ Sbjct: 257 KGKLQDNKRVVIHSLRHGRAVDLLDKGMPIDIVKEYLGHKSIETTLYYSH 306 >gi|67077939|ref|YP_245559.1| integrase-recombinase [Bacillus cereus E33L] gi|66970245|gb|AAY60221.1| integrase-recombinase [Bacillus cereus E33L] Length = 390 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 67/153 (43%), Gaps = 10/153 (6%) Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 N IL L G RI E + +N+ D + L++ GKGDK+R + + + + I E Sbjct: 218 NYTILLALASTGARIQELCTARVKNLHYDGKYWLKVTGKGDKVRQLFISEHLFQCICEMR 277 Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266 F L+ + PLF RG N + + + L TAHT R Sbjct: 278 RRRGFQTVLDRGDESPLFVNQRGNSYNSKTLSNQVTDMIKKTNLEFLLYRENPVTAHTFR 337 Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298 H+FA + G DL + LGH + TT+IY Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHEDIQTTKIY 370 >gi|237737268|ref|ZP_04567749.1| integrase/recombinase [Fusobacterium mortiferum ATCC 9817] gi|229421130|gb|EEO36177.1| integrase/recombinase [Fusobacterium mortiferum ATCC 9817] Length = 325 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 52/185 (28%), Positives = 86/185 (46%), Gaps = 21/185 (11%) Query: 138 VDNVLLHTSHETKWI----------DARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 +DNVL ++ + K I + RN ILY L+ G+R SE ++L +++++ + Sbjct: 127 IDNVLKLSAEDIKKIIGQYTIKGEKEYRNITILYTLFYTGMRSSELINLKFKHLLNREGN 186 Query: 188 LRI---QGKGDKIRIVPLLPSVRKAILEY--YDLCPF---DLNLNIQLPLFRGI-RGKPL 238 I + K K + + P++ + +LEY Y F D N+ Q I + L Sbjct: 187 YFIKLEETKSGKEQYKSIYPTLVEKLLEYKKYKQMFFSISDENIEEQYIFNSSIEKNTKL 246 Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + I+ + +G +S H +RH+ AT L NG D+ I+ LGH T+IY Sbjct: 247 SYRTLYDIIQNFGKIIGKDIS--PHNIRHAVATELSLNGADILEIRDFLGHSDTRVTEIY 304 Query: 299 TNVNS 303 N S Sbjct: 305 INAKS 309 >gi|153939017|ref|YP_001391193.1| phage integrase family site specific recombinase [Clostridium botulinum F str. Langeland] gi|152934913|gb|ABS40411.1| site-specific recombinase, phage integrase family [Clostridium botulinum F str. Langeland] gi|295319232|gb|ADF99609.1| site-specific recombinase, phage integrase family [Clostridium botulinum F str. 230613] Length = 330 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 69/300 (23%), Positives = 128/300 (42%), Gaps = 49/300 (16%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK----IG 84 + LSK T+ SYE R F +L EE+ I +++++ IR +I+ + + +G Sbjct: 18 KNLSKKTMMSYEQTLRLFTKYL----EEEKGIGDVKKVTEKMIREYINYTKNRGKYTIVG 73 Query: 85 DR---------------------SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 D+ ++ + IK F +L ++ + + N++ K Sbjct: 74 DKETLKTNTPEMRKDYGKKVSITTINNYIRNIKVFFNFLLEQSYIKKDVVKNIKQFKNQR 133 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-M 182 + + Q L+ ++ TK+ + R+ + +L G+RI E L + +NI M Sbjct: 134 KAKEFITDSQFAELLRHI-----DTTKFHERRDHLCIMMLLDTGMRIGECLEIKVENIDM 188 Query: 183 DDQSTL--RIQGKGDKIRIVPLLPSVRKAI---LEYYD-LCPFDLNLNIQLPLFRGIRGK 236 + +S L + KG + R V ++K + L+Y D D LF +G Sbjct: 189 NYRSILLPAVDTKGKRDRYVYFSQVMQKELRRWLQYKDRYVESDY-------LFCTTKGT 241 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 P+ F+R ++ GL H LR++FA L +GG + + +LGH + T+ Sbjct: 242 PVLIRTFERKLKDYANRAGLK-DIHPHQLRNNFAKRFLMSGGSIYILSQVLGHSSVKVTE 300 >gi|116629555|ref|YP_814727.1| integrase [Lactobacillus gasseri ATCC 33323] gi|238854086|ref|ZP_04644435.1| integrase [Lactobacillus gasseri 202-4] gi|116095137|gb|ABJ60289.1| Integrase [Lactobacillus gasseri ATCC 33323] gi|238833293|gb|EEQ25581.1| integrase [Lactobacillus gasseri 202-4] Length = 322 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 78/285 (27%), Positives = 121/285 (42%), Gaps = 40/285 (14%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF-ISKRRTQKIGDRSL 88 G S T++ Y+ Q L + I+ IR+++ E+R + + ++ G ++ Sbjct: 59 GCSDRTIKYYKVTVEQLLAKV---------IRPIRRITTEEMREYLVEYQKINNCGKTTI 109 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 I SF +L++ E IL S R +++ +A LV NV+ E Sbjct: 110 DNIRRNISSFFSWLEE-----EDYILK--------SPMRRIHKIRAEKLVKNVITDEDIE 156 Query: 149 TKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 K D R+ A++ LLY G+R+ E + L +I + + GKGDK R V Sbjct: 157 -KLRDGCSCLRDVAMIDLLYSTGIRVGELVRLNRNDINFSERECVVFGKGDKERRVYFDA 215 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN----PGVFQRYIRQLRRYLGLPLST 260 + ++ Y D LF + KP + GV R +RQL R L L Sbjct: 216 KSKVHLINYLRSREDD-----NPALFVSL-DKPNDRLKISGVEIR-LRQLGRKLHLD-RI 267 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 H R S AT + G + +Q ILGH ++ TT Y VN N Sbjct: 268 HPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVNQNN 312 >gi|149916579|ref|ZP_01905094.1| Integrase [Roseobacter sp. AzwK-3b] gi|149809553|gb|EDM69412.1| Integrase [Roseobacter sp. AzwK-3b] Length = 188 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 13/162 (8%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-------IQGKGDKIRIVPLLPSVR 207 R+ I+ + GLR E +L+ ++ D++ +R Q KG + R V + +R Sbjct: 27 RDRTIIQFSFYAGLRAKELAALSRGDVYDEEGRVREQFTLSAAQAKGGRSRTVWINRRLR 86 Query: 208 KAILEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 + + EY LN+ N Q PLF +G + + + + G +++ H+ R Sbjct: 87 RVLEEY----AAQLNITNPQQPLFESQKGGAFSANTMTQLFLDIYKAAGFAHASS-HSGR 141 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 SF T+L + +R + + GH + TTQ Y +VN K D Sbjct: 142 RSFITNLAAKSVSVRVLAELAGHSSIQTTQRYIDVNPKQMSD 183 >gi|255013631|ref|ZP_05285757.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7] Length = 367 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 18/155 (11%) Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR---IVPLLPSVRKAILEY 213 SA L+ + CGLRIS+ + L +N+ D R+ K + +PL K + E Sbjct: 218 SAYLFSCF-CGLRISDIIGLQWKNVFIDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPER 276 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 D D ++ P + I+ + G+ T HT RH+FAT + Sbjct: 277 GDKTADDHVFDL--------------PSGINQLIKPWAKAAGISKRFTFHTARHTFATMM 322 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 L+ G DL ++ +LGH + TQ+Y + +K D Sbjct: 323 LTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKKDD 357 >gi|310765510|gb|ADP10460.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 208 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 12/143 (8%) Query: 190 IQGKGDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLF---RGIRGKPLNPGVFQR 245 +QGKG + R +P+ + Y +++ P L + LF G+ G N G+ Sbjct: 69 VQGKGKQDRDIPVGERALCWLRHYLHEVRPEILAVAGCKALFVAMDGVAGLTAN-GITHA 127 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + LR + + H RH+ AT +L NG DLR IQ++L H + +TQIYT V+ + Sbjct: 128 VVPYLRAGID---KGSCHLFRHAMATQMLENGADLRWIQAMLSHRSVESTQIYTQVSIRA 184 Query: 306 GGDWMMEIYDQTHPSITQKDKKN 328 + ++ THP+ + D ++ Sbjct: 185 ----LQAVHASTHPAEREADSEH 203 >gi|83722825|gb|ABC41684.1| integrase [uncultured bacterium] Length = 164 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 32/42 (76%) Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T HT RHSFATHLL G D+R++Q +LGH + TTQIYT+V Sbjct: 122 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 163 >gi|215407982|emb|CAS02318.1| integron integrase [uncultured bacterium] Length = 149 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 29/58 (50%), Positives = 38/58 (65%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT Sbjct: 92 TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 149 >gi|291526089|emb|CBK91676.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629] gi|291527174|emb|CBK92760.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] Length = 336 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 60/245 (24%), Positives = 105/245 (42%), Gaps = 15/245 (6%) Query: 62 TIRQLSYTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 ++R+++ EIR ++S ++ + ++ I SF +L++ +S + + +K Sbjct: 96 SVRKITTEEIREYLSDYQKLNNCSNVTIDNVRRNISSFFSWLEEEDYILKSPMRRIHKIK 155 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 + ++++ L DN + R+ AI+ LLY G+R+ E ++L + Sbjct: 156 TKTVVKSVISDEGIEKLRDNCN----------EKRDLAIIDLLYSTGIRVGELVNLNIDD 205 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240 I + + GKGDK R V KA + D + N L + L Sbjct: 206 IDLEGRECIVYGKGDKERRVYFDA---KAKVHLKDYINTRTDKNKALFVTLDAPHDRLKI 262 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + +R+L R L L H R S AT + G + +Q ILGH ++ TT Y Sbjct: 263 SGVEIRLRKLGRKLSLE-RIHPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAM 321 Query: 301 VNSKN 305 VN N Sbjct: 322 VNQNN 326 >gi|223369780|gb|ACM88760.1| integrase [uncultured bacterium] Length = 163 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 32/42 (76%) Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T HT RHSFATHLL G D+R++Q +LGH + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|158339199|ref|YP_001520376.1| tyrosine recombinase XerC [Acaryochloris marina MBIC11017] gi|158309440|gb|ABW31057.1| tyrosine recombinase XerC, putative [Acaryochloris marina MBIC11017] Length = 214 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 3/150 (2%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR-IVPLLPSVRKAILE 212 AR+ A++ LL+ GLR SE + ++ +Q L I GKG R + L S +AI E Sbjct: 37 ARDFAMMTLLWEAGLRRSELVGCDVRHFDSEQKRLSILGKGRNEREWIDLTESGVRAISE 96 Query: 213 YYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS-FA 270 + +L + L + + L R G L+ R +R L + G+ + H +RHS Sbjct: 97 WLELREVYGLTEPLFISLDRANWGSRLSGTSVYRIVRALAKKAGVSENFGPHKVRHSGTT 156 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 T+L GGDLR Q+ H L+T + Y + Sbjct: 157 TYLEMTGGDLRGAQAYSRHANLNTLKFYDD 186 >gi|50955878|ref|YP_063166.1| phage-related integrase/recombinase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50952360|gb|AAT90061.1| phage-related integrase/recombinase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 256 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 78/164 (47%), Gaps = 17/164 (10%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQST--------LRIQ------GKGDKIRIV 200 R++ +L ++YG GLR EA+ L ++ + LR++ G K+R V Sbjct: 69 RDATLLKVVYGWGLRSHEAIMLDTVDLFRNPKVSAFGELGMLRVRFGKSSRGGPPKLRTV 128 Query: 201 P-LLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 ++P A+ +Y + + P + ++ R + L + R LGL Sbjct: 129 ASVVPWAVTALQDYLENMLPL-MRTGTSSAMWFSERSRRLGVRAIGDRFARYRDELGLDS 187 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 T H LRHS+ATHL+ +G D +Q LGH STT IYT+V+ Sbjct: 188 RLTPHCLRHSYATHLIEDGHDPVFVQRQLGHVYQSTTSIYTHVS 231 >gi|160938560|ref|ZP_02085913.1| hypothetical protein CLOBOL_03456 [Clostridium bolteae ATCC BAA-613] gi|158438489|gb|EDP16247.1| hypothetical protein CLOBOL_03456 [Clostridium bolteae ATCC BAA-613] Length = 331 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 69/301 (22%), Positives = 128/301 (42%), Gaps = 28/301 (9%) Query: 20 NWLQNLEIERGLSKLTLQSYECDT----RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 N + E++ + K+ ++Y T ++FL L Y + +Q I E + Sbjct: 49 NVVSFPELDIFIGKMRFENYSASTVNQYQRFLTDLLVYVGK--PVQEITGEDVVECLNYY 106 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 + R + KR ++ SF +L R ++ + + +K + AL ++ Sbjct: 107 EQVRQISTSTKDHKRRIA--SSFFAFLHDRGYIRKNPMATVDPIKYVAEIREALTSRE-- 162 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 V+ + + + R++A+L L G R+SE + + ++I +++ GKG Sbjct: 163 --VEKLRIACGG-----NVRDNAVLELFLATGCRVSEVVGMHVEDIDMQVGCVKVLGKGQ 215 Query: 196 KIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 K RIV + + Y D + L+ + P + L + IR++ Sbjct: 216 KERIVFFGDRAMEYLERYLDGRRAGAVILSSRAP------HQGLKKNALENIIRRIANQA 269 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 GL H LRH+FAT L+ G L ++ ++GH + TT+IY +KNG + Y Sbjct: 270 GLGKRVFPHLLRHTFATRALNKGMPLPTLCDLMGHASVETTRIY----AKNGVGKIKYEY 325 Query: 315 D 315 D Sbjct: 326 D 326 >gi|94442274|dbj|BAE93636.1| integron integrase [uncultured bacterium] Length = 162 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 41/69 (59%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 IR L+ Q+ +++ R + HTLRH FATHLL D+R++Q +LGH + Sbjct: 93 IRRHHLHESTLQKSVKKAARGCAINKRMRCHTLRHCFATHLLEANHDIRTVQELLGHAHV 152 Query: 293 STTQIYTNV 301 STT IYT+V Sbjct: 153 STTMIYTHV 161 >gi|55981508|ref|YP_144805.1| putative phage integrase/recombinase [Thermus thermophilus HB8] gi|55772921|dbj|BAD71362.1| putative phage integrase/recombinase [Thermus thermophilus HB8] Length = 293 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 16/170 (9%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL-LPSVRKAILEY 213 R+ A++ +L+ GLR SE L L ++ +R++ KG ++ VP+ LP+ R AIL Y Sbjct: 131 RDKALVMVLWDTGLRASEVLGLRVSDV--KAEAVRVRRKGGAVQWVPVSLPTYR-AILAY 187 Query: 214 Y--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 + P D + LF G PL + +R+L Y GLP H R A Sbjct: 188 ARAERPPSDHDA-----LFLTRSGLPLAYDGLKMVLRRLAEYAGLP-PKPPHAFRRGAAV 241 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321 ++ NG ++Q++LGH T Y + K+ + EI+ P I Sbjct: 242 AMVKNGMPSYALQAMLGHKSPVMTAHYVRLAEKD----LREIHRTASPVI 287 >gi|146292724|ref|YP_001183148.1| phage integrase family protein [Shewanella putrefaciens CN-32] gi|145564414|gb|ABP75349.1| phage integrase family protein [Shewanella putrefaciens CN-32] Length = 235 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 61/248 (24%), Positives = 116/248 (46%), Gaps = 29/248 (11%) Query: 33 KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS-LKRS 91 +++L+ Y TR ++ A ++ Q + ++ ++ A+ ++ R+ LK Sbjct: 11 EISLRGYSARTRNAYLY-AITQLQQYANQPLDNITDEQLTAYFRYLNLERHHSRATLKLQ 69 Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 L+GI F +++ KR T + ++ K+ + LP+ L+ + + +L H Sbjct: 70 LNGIHFFYEHVLKRDFTIQLSLP-----KRPHKLPQLLSCQD----IAALLYHCQ----- 115 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI 210 + A+L L YGCGLR+SE + +I + L++ QGKG R V L P++ + Sbjct: 116 -SLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGACDRWVILSPTLLTLL 174 Query: 211 LEYY-DLCPFDLNLNIQLPLFRGIRGK---PLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 +Y+ P + LF PL+ F++ + + R G+ + H+LR Sbjct: 175 RQYWRAYHPVEW-------LFASTYHDVVYPLHESTFRKALAKSARLAGITKPCSPHSLR 227 Query: 267 HSFATHLL 274 H++ATH L Sbjct: 228 HAYATHQL 235 >gi|254931488|ref|ZP_05264847.1| transposase A [Listeria monocytogenes HPB2262] gi|293583040|gb|EFF95072.1| transposase A [Listeria monocytogenes HPB2262] Length = 361 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 61/213 (28%), Positives = 96/213 (45%), Gaps = 28/213 (13%) Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 K FL ++ K K + + NIL +R KK L + L +Q ++D HT Sbjct: 140 FKGFLHHISKGK-SYKKNILKLRVKKK---LVQVLEHEQVKAIIDAC--HTK-------- 185 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-------QGKGDKIRIVPLLPSVR 207 R+ ++ L+Y GLRI E LSL ++I + + I G K+R + + Sbjct: 186 RDKLLIMLMYEGGLRIGEVLSLRIEDISTWDNLINITPRDHNENGAYIKLRKERTIDVSK 245 Query: 208 KAILEYYDLCPFDLNLNIQ-----LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 + + Y D + +++ + L GKPL IR+L + G+ TA Sbjct: 246 ELMALYTDYLVHEYGEDLEHDYIFINLKESYFGKPLKYQSVLDLIRRLGKRTGITF--TA 303 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 H LRH+ AT L+ +G D +Q LGH + TT Sbjct: 304 HMLRHTHATELIRSGWDAAYVQKRLGHAHVQTT 336 >gi|159905040|ref|YP_001548702.1| integrase family protein [Methanococcus maripaludis C6] gi|159886533|gb|ABX01470.1| integrase family protein [Methanococcus maripaludis C6] Length = 282 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/141 (34%), Positives = 72/141 (51%), Gaps = 6/141 (4%) Query: 167 GLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLN 224 G+RISE ++ Q+I + + I+ GKG K R V ++ I EY + C D + + Sbjct: 131 GVRISEIRNIKLQDIDFESKCIFIRAGKGKKDRYVFFDNNLEFHIKEYIKERCYRDPDCD 190 Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-GLPLSTTAHTLRHSFATHLLSNGGDLRSI 283 LF G+P++ Y L + + T H LRH+FAT +L G DL+S+ Sbjct: 191 ---NLFINRFGRPVSRRSIIYYTEYLNEVAPNIHIRITPHILRHTFATSMLERGIDLKSL 247 Query: 284 QSILGHFRLSTTQIYTNVNSK 304 ILGH +STT IY + N + Sbjct: 248 SLILGHENISTTSIYLHKNKE 268 >gi|254884116|ref|ZP_05256826.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA] gi|254836909|gb|EET17218.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA] Length = 376 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 18/155 (11%) Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR---IVPLLPSVRKAILEY 213 SA L+ + CGLRIS+ + L +N+ D R+ K + +PL K + E Sbjct: 227 SAYLFSCF-CGLRISDIIGLQWKNVFIDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPER 285 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 D D ++ P + I+ + G+ T HT RH+FAT + Sbjct: 286 GDKTADDHVFDL--------------PSGINQLIKPWAKAAGISKRFTFHTARHTFATMM 331 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 L+ G DL ++ +LGH + TQ+Y + +K D Sbjct: 332 LTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKKDD 366 >gi|83722823|gb|ABC41683.1| integrase [uncultured bacterium] Length = 163 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 32/42 (76%) Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T HT RHSFATHLL G D+R++Q +LGH + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|326802762|ref|YP_004320580.1| site-specific recombinase, phage integrase family [Aerococcus urinae ACS-120-V-Col10a] gi|326651079|gb|AEA01262.1| site-specific recombinase, phage integrase family [Aerococcus urinae ACS-120-V-Col10a] Length = 306 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 94/205 (45%), Gaps = 26/205 (12%) Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 + LN++ L++ + L T W+ + L+ GLR SEAL +TP + Q Sbjct: 113 AKYLNQEDLHKLLNQLHLQTEISYDWL-------ILLVAKTGLRFSEALGVTPSDFNFSQ 165 Query: 186 STLRIQG----KGDKIRIVPL--LPSVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGK 236 L I K D+ VP SVRK L++ F N Q P+F ++G+ Sbjct: 166 HMLSINKTWDYKKDEGGFVPTKNASSVRKLRLDWQLTLQFQQLIQNYPQQKPIF--VQGR 223 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 N V QR + +L + G+P T H LRH+ A+ LL G + S+ LGH ++TTQ Sbjct: 224 IHNSTVNQR-LAKLCQQTGIP-EITIHALRHTHASMLLYGGVSIASVAKRLGHANMATTQ 281 Query: 297 -----IYTNVNSKNGGDWMMEIYDQ 316 I + K+ MMEI Q Sbjct: 282 KTYLHIIQELEDKDNNK-MMEILCQ 305 >gi|223369782|gb|ACM88761.1| integrase [uncultured bacterium] Length = 163 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 32/42 (76%) Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T HT RHSFATHLL G D+R++Q +LGH + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|223369772|gb|ACM88756.1| integrase [uncultured bacterium] Length = 163 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 32/42 (76%) Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T HT RHSFATHLL G D+R++Q +LGH + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|223369766|gb|ACM88753.1| integrase [uncultured bacterium] Length = 163 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 32/42 (76%) Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T HT RHSFATHLL G D+R++Q +LGH + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|89147386|gb|ABD62553.1| integrase [uncultured bacterium] Length = 163 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 32/42 (76%) Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T HT RHSFATHLL G D+R++Q +LGH + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|239937597|gb|ACS35604.1| putative IntI2-like integrase [uncultured bacterium] Length = 163 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 32/42 (76%) Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T HT RHSFATHLL G D+R++Q +LGH + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|237719978|ref|ZP_04550459.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4] gi|229450530|gb|EEO56321.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4] Length = 376 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 18/155 (11%) Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR---IVPLLPSVRKAILEY 213 SA L+ + CGLRIS+ + L +N+ D R+ K + +PL K + E Sbjct: 227 SAYLFSCF-CGLRISDIIGLQWKNVFIDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPER 285 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 D D ++ P + I+ + G+ T HT RH+FAT + Sbjct: 286 GDKTADDHVFDL--------------PSGINQLIKPWAKAAGISKRFTFHTARHTFATMM 331 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 L+ G DL ++ +LGH + TQ+Y + +K D Sbjct: 332 LTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKKDD 366 >gi|311110801|ref|ZP_07712198.1| integrase/recombinase, phage integrase family [Lactobacillus gasseri MV-22] gi|311065955|gb|EFQ46295.1| integrase/recombinase, phage integrase family [Lactobacillus gasseri MV-22] Length = 295 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 78/285 (27%), Positives = 121/285 (42%), Gaps = 40/285 (14%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF-ISKRRTQKIGDRSL 88 G S T++ Y+ Q L + I+ IR+++ E+R + + ++ G ++ Sbjct: 32 GCSDRTIKYYKVTVEQLLAKV---------IRPIRRITTEEMREYLVEYQKINNCGKTTI 82 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 I SF +L++ E IL S R +++ +A LV NV+ E Sbjct: 83 DNIRRNISSFFSWLEE-----EDYILK--------SPMRRIHKIRAEKLVKNVITDEDIE 129 Query: 149 TKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 K D R+ A++ LLY G+R+ E + L +I + + GKGDK R V Sbjct: 130 -KLRDGCSCLRDVAMIDLLYSTGIRVGELVRLNRNDINFSERECVVFGKGDKERRVYFDA 188 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN----PGVFQRYIRQLRRYLGLPLST 260 + ++ Y D LF + KP + GV R +RQL R L L Sbjct: 189 KSKVHLINYLRSREDD-----NPALFVSL-DKPNDRLKISGVEIR-LRQLGRKLHLD-RI 240 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 H R S AT + G + +Q ILGH ++ TT Y VN N Sbjct: 241 HPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVNQNN 285 >gi|270294207|ref|ZP_06200409.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275674|gb|EFA21534.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 420 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 83/300 (27%), Positives = 128/300 (42%), Gaps = 48/300 (16%) Query: 32 SKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90 S +T+ Y+ R+ F+ FY ++ IT +LS IRAF +T+ L R Sbjct: 139 SPVTINRYKNVLRKLETFVPRFYEKDDITFH---ELSPDFIRAFDVFLKTEA----GLCR 191 Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150 + I ++K LKK I NM K+ K D V L T++E + Sbjct: 192 N--TIVRYMKCLKK--------ITNMAIAKEWMRKDPFYGYKMEQDETDPVFL-TNNELQ 240 Query: 151 WIDARNSAILYL-------LYGC--GLRISEALSLTPQNIMDDQS----------TLRIQ 191 I R I L L+ C GL ++ +L P+++ D + L + Sbjct: 241 AIMNREFDIPRLELVKDIFLFACFTGLAFADVSTLRPEHLEQDNNGDWWIRKGRVKLERR 300 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 K I VPLLP V AIL+ Y+ P L LP+ + Y++++ Sbjct: 301 RKSSSIANVPLLP-VPLAILKKYESHPICLKQGTCLPVVCNQKA--------NSYLKEIA 351 Query: 252 RYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 + G+ + T H RH+FAT + L+N L+ + ++LGH TQ Y V +N D M Sbjct: 352 DFCGIKKNLTTHAARHTFATTVTLANNVPLQEVSAMLGHASTRMTQHYARVMDRNLKDNM 411 >gi|223369762|gb|ACM88751.1| integrase [uncultured bacterium] Length = 163 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 32/42 (76%) Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T HT RHSFATHLL G D+R++Q +LGH + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|167758156|ref|ZP_02430283.1| hypothetical protein CLOSCI_00494 [Clostridium scindens ATCC 35704] gi|167664053|gb|EDS08183.1| hypothetical protein CLOSCI_00494 [Clostridium scindens ATCC 35704] Length = 352 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 72/297 (24%), Positives = 126/297 (42%), Gaps = 31/297 (10%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAF-------YTEEKITIQTIRQLSYTEI-------R 72 IE S T +Y D R F FL Y+ ++ T+ + +L +I + Sbjct: 37 IEPKSSAKTRINYAYDIRVFFHFLMENNPTYKNYSIDQFTLGDLERLEPVDIEEYMEYLK 96 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL--NMRNLKKSNSLPRALN 130 +I G++ L R +S ++SF Y KR+ + + L +M L ++ R Sbjct: 97 VYIRDDELVTNGEKGLSRKMSALRSFYNYYFKRQAISRNPTLLVDMPKLH-DKAIIRLDA 155 Query: 131 EKQALTL--VDNVLLHTSHET----KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 ++ AL L V+N S + K R+ AIL LL G G+R+SE + L ++ Sbjct: 156 DEVALLLDFVENCGNELSGQALNYYKKTKDRDLAILTLLLGTGIRVSECVGLDLTDVDFK 215 Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLN 239 + + + KG +V V KA+ Y + P + N LF + + + Sbjct: 216 NNGITVTRKGGNQMVVYFGEEVEKALKHYIEGDRKAATPLSGHEN---ALFLSTQKRRMG 272 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + +++ R + T H LR ++ T L GD+ + +LGH ++TT+ Sbjct: 273 IQAVENMVKKYARQVTPTKKITPHKLRSTYGTSLYKETGDIYLVADVLGHKDVNTTK 329 >gi|291164815|gb|ADD80845.1| tyrosine recombinase/integrase [Rhodococcus phage ReqiDocB7] Length = 159 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 15/147 (10%) Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE-YY 214 + A++ LL CGLRISE SL+ +I D+ + + GKGDK R VP+ + + + Sbjct: 16 DRALVTLLGRCGLRISEVRSLSTYSIDTDERVITVIGKGDKTREVPISSQAWEDLRDRIS 75 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 + P ++ + PL+ +R + + GL S T H R + AT + Sbjct: 76 EAGPGEMLV-------------PLSDRTARRRWKDIAGKAGLGDSAT-HDGRATVATAMH 121 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV 301 + ++R +Q LGH TT+ YT V Sbjct: 122 NKTNNIRVVQEFLGHASSKTTETYTAV 148 >gi|89147486|gb|ABD62603.1| integrase [uncultured bacterium] Length = 163 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 27/41 (65%), Positives = 33/41 (80%) Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T HTLRHSFATHLL +G D+R++Q +LGH L TT IYT+V Sbjct: 122 TCHTLRHSFATHLLESGYDIRTVQELLGHKDLRTTMIYTHV 162 >gi|223369800|gb|ACM88769.1| integrase [uncultured bacterium] Length = 163 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 32/42 (76%) Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T HT RHSFATHLL G D+R++Q +LGH + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|83722821|gb|ABC41682.1| integrase [uncultured bacterium] Length = 163 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 26/41 (63%), Positives = 32/41 (78%) Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T HT RHSFATHLL G D+R++Q +LGH + TTQIYT+V Sbjct: 122 TCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|294793950|ref|ZP_06759087.1| DNA integration/recombination/inversion protein [Veillonella sp. 3_1_44] gi|294455520|gb|EFG23892.1| DNA integration/recombination/inversion protein [Veillonella sp. 3_1_44] Length = 308 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 25/181 (13%) Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 + LN+ + TL+ N+ L + W+ + ++ G+R SEAL+LTP++ Sbjct: 116 KYLNQFELHTLLVNLKLTSEINWDWL-------ILIIAKTGMRFSEALALTPKDFDFSHQ 168 Query: 187 TLRIQGKGDKIRIVPLLP-----SVRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPL 238 +L + D LP SVRK L++ + F L P+F ++G+ Sbjct: 169 SLIVDKTWDYKGNGGFLPTKNRSSVRKIQLDWQTIIKFSELIKGLPEDKPIF--VKGRVF 226 Query: 239 NP---GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 N GV +RY ++L G+P+ + H LRH+ A+ LL G + S+ LGH ++TT Sbjct: 227 NSTINGVLERYCKKL----GIPV-ISIHGLRHTHASLLLFAGVSIASVARRLGHASMTTT 281 Query: 296 Q 296 Q Sbjct: 282 Q 282 >gi|300863888|ref|ZP_07108808.1| Integrase family protein [Oscillatoria sp. PCC 6506] gi|300338109|emb|CBN53954.1| Integrase family protein [Oscillatoria sp. PCC 6506] Length = 288 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 69/284 (24%), Positives = 120/284 (42%), Gaps = 47/284 (16%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 G SK T Y ++FL F + + ++ E++ F + + + + Sbjct: 23 GKSKRTQSYYRLYAQRFLEFAG---------KPLLLVTLAEVQGFATSLEQNNLSASTQR 73 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA--------LNEKQALTLVDNV 141 ++ +KS L + K +I RN+ LP+A L+E + LT++D Sbjct: 74 TIMAAVKSLLSFGTKIEILP-------RNVGAPLPLPKAPDTLSERLLSEIEVLTMID-- 124 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNIMDDQSTLRIQGKGDKIRI 199 L + + RN I+ LY G R+SE AL +I +++ + + GKG K R Sbjct: 125 -LES-------NLRNKLIIKTLYYGGFRVSELCALKWKHLSIRNNKGQITVTGKGIKTRT 176 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR-YIRQLRRYLGLPL 258 V L+P+ + +L + P+FR + G QR ++ ++ + P Sbjct: 177 V-LIPASL-----WVELQRLRGDSGENEPVFRSQKHSHDGQGHLQREWVHKIVQAAAKPA 230 Query: 259 STTA----HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 T HTLRH+ A+H L G + + LGH ++ T Y Sbjct: 231 KITGKVSPHTLRHAHASHALERGAKIHLVSETLGHSSIAITSRY 274 >gi|298345180|ref|YP_003717867.1| phage family integrase/recombinase protein [Mobiluncus curtisii ATCC 43063] gi|298235241|gb|ADI66373.1| phage family integrase/recombinase protein [Mobiluncus curtisii ATCC 43063] Length = 222 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 46/137 (33%), Positives = 65/137 (47%), Gaps = 15/137 (10%) Query: 169 RISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226 R E + +I +D +L + GKG+K R+VP+ + +I DL Sbjct: 85 RSGEVARVNAGDITEDLLGYSLVVHGKGNKQRVVPITDGLAASIR--------DLAEPGT 136 Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286 +F G G + P R+I +L L LP T HTLRH F TH + DL ++Q + Sbjct: 137 GWVFPGADGGHVTP----RWISKLGANL-LPSPWTMHTLRHRFGTHAYAGDRDLVAVQRL 191 Query: 287 LGHFRLSTTQIYTNVNS 303 LGH +STTQ Y S Sbjct: 192 LGHASVSTTQRYVEPPS 208 >gi|51571648|emb|CAH19070.1| DNA integrase [Pseudomonas aeruginosa] Length = 305 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 74/165 (44%), Gaps = 37/165 (22%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207 LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198 Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 +A + F + + P +R + FQ Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289 R ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGH 303 >gi|298375507|ref|ZP_06985464.1| integrase [Bacteroides sp. 3_1_19] gi|298268007|gb|EFI09663.1| integrase [Bacteroides sp. 3_1_19] Length = 330 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 69/284 (24%), Positives = 125/284 (44%), Gaps = 38/284 (13%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS----KRRTQKIGD 85 G S+ TL Y + L+ L+ I ++ T+IR ++S + ++ K+ Sbjct: 67 GCSEKTLTYYRNTIERLLVTLSL---------AICHITTTDIRTYLSDYQEEHQSSKVTI 117 Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 +++R S SF +L+ +S + + +K + + L+++Q L D Sbjct: 118 DNMRRIFS---SFFAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQLRD------ 168 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 S TK R+ AI+ L G+R+ E + L+ ++I + + GKG+K R+V Sbjct: 169 SCTTK----RDLAIIDFLSSTGIRVGELVKLSREDIDFHERQCVVFGKGNKERVVYFNAR 224 Query: 206 VRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 + + +Y D P L +++ P R L + IR++ + L +P Sbjct: 225 TKLHLQQYLNERTDSNPA-LFVSLNSPHSR------LTISGVEVRIRKMGQALSMP-KVH 276 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 H R + AT + G + +Q +LGH R+ TT Y VN N Sbjct: 277 PHKFRRTLATMAIDKGMPIEQVQRLLGHVRIDTTLHYAIVNQNN 320 >gi|297561148|ref|YP_003680122.1| integrase family protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845596|gb|ADH67616.1| integrase family protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 329 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 76/146 (52%), Gaps = 9/146 (6%) Query: 167 GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224 G+R +E LSL +++ + +R+ GKG R++P+ + +A+LE Y + + Sbjct: 160 GMRSAEMLSLRVESVGGRSGERRIRVVGKGGGERVLPIEVPL-EALLEAYLVSRRERFGV 218 Query: 225 IQL--PLFRGIRGKPLNPGVFQRYIRQLRRYLGL----PLSTTAHTLRHSFATHLLSNGG 278 ++ PL RG+ L G Q ++Q ++ G+ T H LRH+FAT L +G Sbjct: 219 VRGSDPLLVDNRGEGLRRGGLQYLVQQCYKHAGVHDRVARGTLVHALRHTFATRLAEDGA 278 Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSK 304 + I +LGH ++++Q Y V ++ Sbjct: 279 SVSEIMHLLGHASVASSQAYIEVTAR 304 >gi|198282467|ref|YP_002218788.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198282806|ref|YP_002219127.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198284131|ref|YP_002220452.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665325|ref|YP_002426785.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] gi|218666072|ref|YP_002425002.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] gi|218667691|ref|YP_002425322.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] gi|198246988|gb|ACH82581.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198247327|gb|ACH82920.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198248652|gb|ACH84245.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517538|gb|ACK78124.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] gi|218518285|gb|ACK78871.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] gi|218519904|gb|ACK80490.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] Length = 313 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 72/267 (26%), Positives = 110/267 (41%), Gaps = 33/267 (12%) Query: 71 IRAF---ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK--ITTESNILNMRNLKKSNSL 125 +R+F + R + IG ++ L+G S Y K+ +T R + + L Sbjct: 28 LRSFCRAVGDRPIETIGADAVSIFLNGKGSVTAYWYKKYHVLTGCYRFALARGMVTAIPL 87 Query: 126 PRALNEKQALTLVDNVLLHT-------------SHETKWIDARNSAILYLLYGCGLRISE 172 PR++ ++ V + H + ++ D A+L L+YG GLRISE Sbjct: 88 PRSVPKQDGPIFVPYIYSHAELKRLIDVLPALCAGRSRIDDYVFKALLLLMYGAGLRISE 147 Query: 173 ALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231 ALSL ++ Q+ L + + K K RIVPL + + + EY + P F Sbjct: 148 ALSLHIHDVDLQQTILYVRETKFYKTRIVPLGKDLTQILNEYIAKRNNRYSAATDAPFFC 207 Query: 232 GIRGKPLNPGVFQRYIRQLR------RYLGLPLSTTAHTLRHSFATHLL----SNGGDLR 281 G PL+ R++R + G H LRHS A H L G DLR Sbjct: 208 FRDGTPLSRSAAHGLFRRVRAKADVLKEGGPRHQPRLHDLRHSAAVHRLIAWYRCGADLR 267 Query: 282 S----IQSILGHFRLSTTQIYTNVNSK 304 + + LGH LS TQ Y + + Sbjct: 268 DLLPKLATYLGHVDLSATQRYLTMTPE 294 >gi|150400371|ref|YP_001324138.1| phage integrase family protein [Methanococcus vannielii SB] gi|150013074|gb|ABR55526.1| phage integrase family protein [Methanococcus vannielii SB] Length = 322 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 85/168 (50%), Gaps = 13/168 (7%) Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIR 198 N+++ + TK R++ I+ L+ G RISEAL+LT + ++ T ++ KG+ R Sbjct: 145 NIVVESKSRTK---IRDATIIRFLWDSGCRISEALNLTYGDSDLEEGTFVLRNTKGNAER 201 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG----VFQRYIRQLRRYL 254 V + ++ YY +++ + LF+ G+P+ G +F++ + +L++ Sbjct: 202 TV-VCSRDTLDVINYY--VQYNVKKGSKDKLFQNSDGEPIGRGWIGEIFRKAVDRLKKEG 258 Query: 255 GLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 +P + H+LRH A LL G + ++ LGH L TT Y++ Sbjct: 259 RIPANKKVVVHSLRHGRAVDLLEKGQPIDIVKEYLGHKSLDTTLFYSH 306 >gi|114217147|dbj|BAF31250.1| integron integrase [uncultured bacterium] Length = 148 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 1/71 (1%) Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290 R IR L+ F R ++ R + +AHT RHS+ATHLL NG D+R+I +LGH Sbjct: 79 RKIRYHALS-ATFGRNMKTAARLAYIDKKISAHTFRHSYATHLLQNGIDIRTISGLLGHK 137 Query: 291 RLSTTQIYTNV 301 L TT IYT+V Sbjct: 138 NLQTTMIYTHV 148 >gi|254497199|ref|ZP_05110010.1| conserved hypothetical protein [Legionella drancourtii LLAP12] gi|254353582|gb|EET12306.1| conserved hypothetical protein [Legionella drancourtii LLAP12] Length = 214 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 14/158 (8%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-------RIQGKGDKIRIVPLLPSV 206 ARN+A++Y +G GLR E SLT ++ D L R KG+K R L Sbjct: 49 ARNTALVYCSFGLGLRAKEIASLTIADVADAHYQLLQELSLKRSMTKGEKQRQAYLTHKK 108 Query: 207 RKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 + +L+ + D+ ++ LF+ R Q++ + L G+ ++H+ Sbjct: 109 VREVLQAHLNDIK----GMSHDKALFQTQRQSRFTANTLQKWFKALYDKAGIH-GASSHS 163 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 R +F T L+ G D++++ + GH + TT IY N Sbjct: 164 GRRTFITRLIEQGADIKAVSRLAGHANIVTTAIYVEDN 201 >gi|89147384|gb|ABD62552.1| integrase [uncultured bacterium] gi|223369764|gb|ACM88752.1| integrase [uncultured bacterium] Length = 163 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 32/42 (76%) Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T HT RHSFATHLL G D+R++Q +LGH + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|126175754|ref|YP_001051903.1| phage integrase family protein [Shewanella baltica OS155] gi|125998959|gb|ABN63034.1| phage integrase family protein [Shewanella baltica OS155] Length = 311 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 62/242 (25%), Positives = 108/242 (44%), Gaps = 28/242 (11%) Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY---LKKRKITTESNILNMRNLKKSNSLP 126 +IRA ++ + RS+ R++ IK+ +K + K ++ +N+ + +K Sbjct: 54 QIRAVMTH---AQWSARSINRAMIAIKNIVKVAALMNKADLSQVANLQTINQVKHGEHQG 110 Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 L+ +Q V VL + + RN I L G GLR SE +L + + Sbjct: 111 TPLSTEQ----VTAVLDYLRAQKGTFATRNLVIFSLFLGTGLRRSELSALMLSDYDANLH 166 Query: 187 TLRIQ-GKGDKIRIVPLLPSVRKAILEY---------YDLCPFDLNLNIQLPLFRGIRGK 236 TL + GKG+K R + L V + +L + Y +C L ++L + Sbjct: 167 TLTVAAGKGNKSRTLFLPEWVEQNLLAWLKLRQRQQGYLVCKSTLTGKLKLT-------E 219 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 P +P R ++ LG+ + + H LR +F T LL D+ +++ + GH +STT Sbjct: 220 PTSPTALYRLVKDTLYELGVD-NVSPHDLRRTFITRLLEQNVDINTVRQMAGHADISTTT 278 Query: 297 IY 298 IY Sbjct: 279 IY 280 >gi|317484015|ref|ZP_07942950.1| phage integrase [Bilophila wadsworthia 3_1_6] gi|316924742|gb|EFV45893.1| phage integrase [Bilophila wadsworthia 3_1_6] Length = 311 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 71/286 (24%), Positives = 116/286 (40%), Gaps = 36/286 (12%) Query: 42 DTRQFLIFL-AFYTEEKITIQ---------------TIRQLSYTEIRAFISKRRTQKIGD 85 D R L FL A Y TI+ + QL +I A++ + + Sbjct: 22 DERVILFFLHAVYANSTKTIELYALYVIGLFNYAKKSFNQLKAWDIDAYLRHLTNKGLKP 81 Query: 86 RSLKRSLSGIKSFLKYLKKRKITT--ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 S + + ++SF ++L + T + L + SLP L+ ++ L Sbjct: 82 SSRNTAAATLRSFFRHLVDSGVCTVNPAAFLKRKRNDGKGSLPGHLSHSLGRDELER--L 139 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVP 201 E R+ + +L+ GLR EA+SL N+++ Q L + GKG K R V Sbjct: 140 FAGMEEVGAPFRDIVLFRVLFMTGLRAEEAVSLKWMNVINWQGRWYLDVLGKGSKARRV- 198 Query: 202 LLPSVRKAILEYYDLCPFDLNLNI----QLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG 255 LP +A LE +L + + P+F +R G+P++ +++ + Sbjct: 199 YLPQKAQAALE-------ELRRHTSPRPEYPIFENLRHRGRPISRHGLYALVKKWSSLVI 251 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + H RHS T L S G L SIQ++ GH + TT Y Sbjct: 252 SRGDVSPHWFRHSCFTQLASRGARLESIQALAGHANIQTTMHYNEA 297 >gi|223369768|gb|ACM88754.1| integrase [uncultured bacterium] Length = 163 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 32/42 (76%) Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T HT RHSFATHLL G D+R++Q +LGH + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|167623237|ref|YP_001673531.1| integrase family protein [Shewanella halifaxensis HAW-EB4] gi|167353259|gb|ABZ75872.1| integrase family protein [Shewanella halifaxensis HAW-EB4] Length = 341 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 65/144 (45%), Gaps = 21/144 (14%) Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 + I+ + G R SEA L I ++ T ++ KG K R VP+ E D Sbjct: 199 TTIVLICLATGCRWSEAEGLRGSQIAHNRITF-VKTKGKKNRTVPIAK-------ELADK 250 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 P + PLFR R F+R I+ R L P H LRH+FA+H + N Sbjct: 251 IP-----RARGPLFRPCRKS------FERAIK--RTKLNFPDRQMTHILRHTFASHFMMN 297 Query: 277 GGDLRSIQSILGHFRLSTTQIYTN 300 GG++ ++ ILGH + T Y + Sbjct: 298 GGNILVLKQILGHSDIKDTMRYAH 321 >gi|56963097|ref|YP_174824.1| phage-related integrase/recombinase [Bacillus clausii KSM-K16] gi|56909336|dbj|BAD63863.1| phage-related integrase/recombinase [Bacillus clausii KSM-K16] Length = 321 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 48/220 (21%), Positives = 103/220 (46%), Gaps = 14/220 (6%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALTLVDNVLLHTSHET 149 L +++ +L K+++ E+ + +++ LK K + +P + ++ Q L + + Sbjct: 99 LRAVRALFNFLFKKRLIPENPVADLKLLKNIKGDIIPFSKDQLQRL-------FNQADRR 151 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRIVPLLPSVRK 208 + RN ++ ++ G+R+ E + +++ DD S + K +R VP+ K Sbjct: 152 TFTGLRNYVMMMVMLDTGVRVKELCQIDMVDVLWDDNSIVIRHPKNGYVRRVPISEETIK 211 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRH 267 A+ +Y + ++ N LF + K ++ Q ++ Q + + + + HT RH Sbjct: 212 ALEQYVNHRGQNIGNN---ALFVTLDDKRISKRQVQNFLSQYGKGASITDVRCSPHTFRH 268 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 +FA L G ++ +Q ILGH L ++Y ++ S G Sbjct: 269 TFAKMALQGGANMFELQQILGHSSLEMVRVYVHLFSNEIG 308 >gi|156740071|ref|YP_001430200.1| integrase family protein [Roseiflexus castenholzii DSM 13941] gi|156231399|gb|ABU56182.1| integrase family protein [Roseiflexus castenholzii DSM 13941] Length = 337 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 80/184 (43%), Gaps = 22/184 (11%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR----IQGKGDKIRIVPLLPSVRKAI 210 RN+A+L+ L+ G RISE LSL ++ D + + GKG + R V L ++AI Sbjct: 152 RNAALLHTLFSTGARISEVLSLNVGDVRADNGRIVPRAFVIGKGQRRRAVFLRAHAQQAI 211 Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGK----------PLNPGVFQRYIRQLR-----RYLG 255 L Y L + G RG + G R Q+ R Sbjct: 212 LRYLHARHAAFPRADALFISHGPRGAGGRLGRIAAWEIVTGAAHRVADQIECEGRIREAR 271 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + T HT RH AT LL+ G L + +ILGH + T+I +++ + + E++D Sbjct: 272 ALRTVTPHTFRHFVATWLLNEGAQLSEVSAILGH---ANTRITEQYYARHTDEQLQELHD 328 Query: 316 QTHP 319 Q P Sbjct: 329 QFAP 332 >gi|89147381|gb|ABD62551.1| integrase [uncultured bacterium] Length = 163 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 29/59 (49%), Positives = 40/59 (67%) Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 Q+ I++ R L + + HTLRHSFATHLL G D+R +Q +LGH ++TT IYT+V Sbjct: 104 LQQAIKRAARAANLSHNVSPHTLRHSFATHLLEFGTDIRVLQELLGHQHVNTTMIYTHV 162 >gi|83814492|ref|YP_444224.1| integrase/recombinase [Salinibacter ruber DSM 13855] gi|83755886|gb|ABC43999.1| integrase/recombinase [Salinibacter ruber DSM 13855] Length = 451 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 78/183 (42%), Gaps = 37/183 (20%) Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKG--DKIRIVP--LLPSVRK-- 208 N +LLYG GLR+SEAL L + + S L + GKG D+ ++P L +R+ Sbjct: 249 NRLTAHLLYGSGLRLSEALRLRVKELDVGTSRLHVWDGKGGTDRTTVLPERLHGPLRRHL 308 Query: 209 ----------------------AILEYYDLCP--------FDLNLNIQLPLFRGIRGKPL 238 AI E Y F + P +R Sbjct: 309 KTVKAQHEADCADGVGGVYLPDAIAEKYPTAKTEWRWQYVFPSTTLSEDPRSGAVRRHHR 368 Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + QR +++ + T HTLRHSFATH L +G D+R+IQ +L H +L TT Y Sbjct: 369 SDSAVQRAVKKAADATDIEKRATCHTLRHSFATHRLQDGTDVRTIQKLLAHEQLRTTMQY 428 Query: 299 TNV 301 +V Sbjct: 429 VHV 431 >gi|295841016|dbj|BAJ06888.1| integron integrase intI [uncultured bacterium] Length = 421 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 78/296 (26%), Positives = 125/296 (42%), Gaps = 66/296 (22%) Query: 22 LQNLEIE---RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ-LSYTEIRAFISK 77 L+ L IE R S T Q+Y +FL+F +F TE IT+ + + Y ++ Sbjct: 149 LERLVIEIRSRQYSIRTEQAYSDWVLRFLVFSSFETERDITVDKVSVFIEYLAVK----- 203 Query: 78 RRTQKIGDRSLKRSLSGIK-SFLKYLKKRKITTE-SNILNMRNLKKSNSLPRALNEKQAL 135 R++ S G + L +L KR + E ++ + KK LP L+ + Sbjct: 204 --------RNVAASTQGQALNALVFLFKRVLHVELEEKIDFQRAKKPRRLPVVLSRGE-- 253 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKG 194 ++ +L SH+ + + L+YG GLR+ E + L +I D + + QGKG Sbjct: 254 --INELLAAVSHDL------HRLMASLMYGAGLRLMECIRLRVFDIDFDYGQIVVRQGKG 305 Query: 195 DKIRIVP----LLPSVRKAILEYYDLCPFDLNL---NIQLP---------LFRGIRGKPL 238 +K R+VP L P + + I + L DL + LP R +R + L Sbjct: 306 NKDRVVPLPEKLKPELMQQINKVAQLDKKDLEAGYGEVVLPGALSRKYKNAARELRWQYL 365 Query: 239 NPGV--------------------FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 P V Q+ +++ +GL + H LRH+FATHLL Sbjct: 366 FPSVKLSTDPRSKKTMRHHLHENNIQKSVKKSAEQIGLMKKVSCHALRHTFATHLL 421 >gi|223369774|gb|ACM88757.1| integrase [uncultured bacterium] Length = 163 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 32/42 (76%) Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T HT RHSFATHLL G D+R++Q +LGH + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|223369776|gb|ACM88758.1| integrase [uncultured bacterium] Length = 163 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 32/42 (76%) Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T HT RHSFATHLL G D+R++Q +LGH + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|114319153|gb|ABI63576.1| integrase [Klebsiella pneumoniae] Length = 304 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 70/292 (23%), Positives = 117/292 (40%), Gaps = 58/292 (19%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 33 TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 83 LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207 + LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191 Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +A + F + + P +R Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289 + FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGH 303 >gi|296164532|ref|ZP_06847103.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900132|gb|EFG79567.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 231 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 74/152 (48%), Gaps = 19/152 (12%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSVRKAI 210 D R +L L GLR +E + +++ + L + GKG+K+R+VPL + I Sbjct: 85 DPRVRLMLRLAAEAGLRRAEIARVHRRDLTRGPAGAELLVHGKGEKLRVVPLGDDLAATI 144 Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 + LF G L+P R++ +L LP TAHTLRH FA Sbjct: 145 A------------DCDAYLFPGDDEGHLSP----RWVGKLM-AGALPDHWTAHTLRHRFA 187 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 T +LR++Q++LGH ++TT+ YT V+ Sbjct: 188 TRAYRGSRNLRAVQTLLGHSSVATTERYTAVD 219 >gi|229004126|ref|ZP_04161927.1| integrase/recombinase [Bacillus mycoides Rock1-4] gi|228756987|gb|EEM06231.1| integrase/recombinase [Bacillus mycoides Rock1-4] Length = 316 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 6/147 (4%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ AI+ LL G+R+ E +++ ++I T+ + GK + + +P+ + K I E+ Sbjct: 150 RDHAIIVLLLSTGIRLGELVNIQWKDIDLVNQTVVLFGKARRQQSIPITDKLTKEICEWR 209 Query: 215 DLCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFAT 271 +L LP LF GK L P + ++L + + + + HT RHSFA Sbjct: 210 IFVEKELG---SLPQYLFTSREGKQLTPNAVKLIFQRLSKVMNFKDVRLSCHTFRHSFAH 266 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIY 298 + G D+ ++Q +L H L T+ Y Sbjct: 267 RCIMQGMDVFTLQKLLRHSNLRMTERY 293 >gi|196041298|ref|ZP_03108592.1| integrase/recombinase [Bacillus cereus NVH0597-99] gi|196027783|gb|EDX66396.1| integrase/recombinase [Bacillus cereus NVH0597-99] Length = 330 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 66/286 (23%), Positives = 132/286 (46%), Gaps = 32/286 (11%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE------IRAFISKRRTQK 82 R L T++ Y + + FL L TE++I + +R + TE + ++ R K Sbjct: 41 RNLRPFTIKYYLNELQAFLNLL---TEQEIDVSLLRPYNMTEEHVKENVILYMKNYRGIK 97 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 + S+ L +++F +L K+K + + N++ LK + +++Q N L Sbjct: 98 VV--SINTRLRALRAFYNFLYKQKHIPRNPMENIKLLKDRKRIIPTFSKEQL-----NKL 150 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVP 201 H + + R+ I+ L+ G+R++E + L+ ++I + S L I+ K + R VP Sbjct: 151 FHQPNLRTFTGVRDYTIMMLMLETGIRVNELVGLSVKDIRWEDSLLVIRNAKSYRERQVP 210 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRY-----IRQLRRYLG 255 + ++ + +Y + + + LF + G L G+ QR + Q++ Sbjct: 211 IQRDMKNQLKKYIAIRGYVEST----ALFVTVDGTRLTRRGIQQRISIYGNMAQIK---- 262 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + + HT RH+FA + G ++ +Q+ILGH + + Y N+ Sbjct: 263 -DVRCSPHTFRHTFAKLSVQQGANIFELQAILGHTNMEIVKTYVNL 307 >gi|89147359|gb|ABD62540.1| integrase [uncultured bacterium] Length = 163 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 29/63 (46%), Positives = 41/63 (65%) Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + + Q +RQ + T HTLRHSFATHLL +G ++R+IQ +LGH ++TT IY Sbjct: 100 DESMLQAALRQAVVASAINKPATCHTLRHSFATHLLDSGYNIRTIQDLLGHKDVATTMIY 159 Query: 299 TNV 301 T+V Sbjct: 160 THV 162 >gi|89147655|gb|ABD62686.1| integrase [uncultured bacterium] Length = 163 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 32/42 (76%) Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T HT RHSFATHLL G D+R++Q +LGH + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|302064330|emb|CBL51506.1| transposase A [Staphylococcus aureus] Length = 361 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 77/304 (25%), Positives = 135/304 (44%), Gaps = 57/304 (18%) Query: 10 VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ--LS 67 ++FELL + WL+ + + LQS E E+ T+ TI +S Sbjct: 70 INFELLADFVGWLR---YPTANNVIDLQSKEA------------IREETTVNTILNAVMS 114 Query: 68 YTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127 + + + + + ++ + ++ R+ G FL ++ K + + N+L +R KK R Sbjct: 115 FLDYLSRLGEFKSIDVFKQAKGRNFKG---FLHHVNKGRY--QKNVLKLRVKKKQ---IR 166 Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL----------- 176 L ++ ++D HT R+ IL L+Y GLRI E LSL Sbjct: 167 TLTAEEVKQIIDAC--HTK--------RDKLILMLMYEGGLRIGEVLSLRLEDIATWDNQ 216 Query: 177 ---TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL--EYYDLCPFDLNLNIQLPLFR 231 TP+++ +++ ++++ K I + L S+ L EY + D + + L Sbjct: 217 IHLTPRDVNVNEAYIKLR-KERTIHVSKELMSLYTDYLVYEYSEELEHDY---VFISLKE 272 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291 G GKPL +R++ + G+ T+H LRH+ AT L+ G D+ +Q LGH Sbjct: 273 GYFGKPLKYQSVLDLVRRIVKRTGIEF--TSHMLRHTHATQLIREGWDVAFVQKRLGHAH 330 Query: 292 LSTT 295 + TT Sbjct: 331 VQTT 334 >gi|223369770|gb|ACM88755.1| integrase [uncultured bacterium] Length = 163 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 26/41 (63%), Positives = 32/41 (78%) Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T HT RHSFATHLL G D+R++Q +LGH + TTQIYT+V Sbjct: 122 TCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|89147510|gb|ABD62615.1| integrase [uncultured bacterium] Length = 163 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 1/80 (1%) Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281 NL++ P IR ++ V Q +R+ R + T HTLRHSFATHLL G ++R Sbjct: 84 NLSVD-PRSGKIRRYHVSDKVLQSALRRAVREADIQKHATVHTLRHSFATHLLLAGTNIR 142 Query: 282 SIQSILGHFRLSTTQIYTNV 301 +Q +LGH + TT IYT+V Sbjct: 143 EVQELLGHANVETTMIYTHV 162 >gi|291166427|gb|EFE28473.1| site-specific recombinase, phage integrase family [Filifactor alocis ATCC 35896] Length = 372 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 110/231 (47%), Gaps = 19/231 (8%) Query: 85 DRSLKRSLSGIKSFLKYL-----KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 ++SL R S + S K+L K + N + M L +++E L V Sbjct: 122 NKSLSRKKSSLTSLFKFLFRNEQMKHNLIDGFNPIKMPKLNPDAIKRLSIDETNELIHVI 181 Query: 140 NVLLH-TSHETKWIDA---RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 N + T+HE + + R+ AI+ + GLR+SE L +I + + + K Sbjct: 182 NTGIGLTNHEKIYWEKTKYRDKAIIMIFITLGLRLSELEQLNITSINFKRKEILVFRKRG 241 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQL-RRY 253 K ++P ++ +IL+Y +L + +N + PLF ++GK + R IRQ+ ++Y Sbjct: 242 KEVLMPFNDTIEHSILQYINLERNHIIINDENDPLFLSLQGKRMTG----RQIRQMIKKY 297 Query: 254 LGLPLST----TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + L + H LR + A+ L+ G + +Q++L H ++TTQIY + Sbjct: 298 TSIVLGDNEGYSPHKLRSTLASSLIERGFSIYDVQNLLDHDNVTTTQIYAS 348 >gi|223587858|emb|CAX36644.1| integron intagrase IntI protein [Citrobacter sp. JEK-2009] Length = 136 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 29/58 (50%), Positives = 38/58 (65%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT Sbjct: 79 TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 136 >gi|25986886|gb|AAN16071.1| site-specific recombinase [Pseudomonas stutzeri] Length = 299 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 75/176 (42%), Gaps = 43/176 (24%) Query: 159 ILYLLYGCGLRISEALSLTPQNI--------------MDDQSTL---------------- 188 + LLYG G+R+ EAL L +++ M D+ T+ Sbjct: 127 VCSLLYGTGMRLMEALRLRVKDVDFSRHEILIRDGKGMKDRVTMLPRSLVQPLRRHLAVV 186 Query: 189 -------RIQGKGDKIRIVPLLPSVRKAILEY---YDLCPFDLNLNIQLPLFRGIRGKPL 238 R QG+GD L KA E+ Y L+++ P +R L Sbjct: 187 KAIHDSEREQGRGDVWLPFALARKYPKAPKEWGWQYVFPASGLSVD---PRSGAVRRHHL 243 Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 + QR ++ R G+ T HTLRHSFATHLL +G D+R+ Q +LGH + T Sbjct: 244 DEKRIQRAFKRAIRGAGIVKPATPHTLRHSFATHLLESGQDIRTDQELLGHSDVKT 299 >gi|186896553|ref|YP_001873665.1| integrase family protein [Yersinia pseudotuberculosis PB1/+] gi|186699579|gb|ACC90208.1| integrase family protein [Yersinia pseudotuberculosis PB1/+] Length = 327 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 19/149 (12%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211 +D N + L G R EA+ L ++I+D++ T + K K R VP+ V Sbjct: 177 LDGDNRRVAILCLSTGARWGEAIKLRTEHIIDNRITF-VATKNGKQRTVPISRDV----- 230 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 + DL L + +F++ ++ ++ LP H LRH+FAT Sbjct: 231 -FNDLTAMKSGLLFNDAAYL----------IFRQKLKSVK--TDLPQGQATHVLRHTFAT 277 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 H + NGG++ ++Q ILGH + T +Y + Sbjct: 278 HFMINGGNIITLQRILGHSTIQQTMLYAH 306 >gi|302878141|ref|YP_003846705.1| integrase family protein [Gallionella capsiferriformans ES-2] gi|302580930|gb|ADL54941.1| integrase family protein [Gallionella capsiferriformans ES-2] Length = 664 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 25/177 (14%) Query: 154 ARNSAILYLLYGCGLRISEAL--------SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 AR +L Y GLRISE + ++ N + + L++ GKG K R VPL Sbjct: 470 ARLRFVLPFAYATGLRISELVDAKVSRMYTMPLSNEIGVRWMLKVCGKGGKWRAVPLSSE 529 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQLRRYLGLPLST---- 260 V +A+ Y++ L++ P + + V + + LR + G + Sbjct: 530 VIQALQTYFEYRGLSLDITSNPPDTPLVSSEIGTGSVTTSALSKSLRSFFGEIAQSLMMD 589 Query: 261 ------------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 TAH LRH+ +HL +G L +Q +LGH L TT IYT+ + +N Sbjct: 590 GKHIEAKAFDHATAHWLRHTCGSHLALSGVPLNIVQRLLGHTSLQTTSIYTDTSDEN 646 >gi|239625431|ref|ZP_04668462.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519661|gb|EEQ59527.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 278 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 9/146 (6%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R S +L + G+R+SE +T + + Q+ + +GK R+V L + +A+ Y Sbjct: 120 RLSMLLQTICATGIRVSEVRHITVEAVRAGQAKVDCKGKN---RVVFLPKVLCRALQRYC 176 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHL 273 D+ P+F+ GKPLN R ++ L + G+ P H LRH FA Sbjct: 177 RRYGIDIG-----PVFKTASGKPLNRTNIWRDMKALCKRAGVEPGKVFPHNLRHLFARTY 231 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYT 299 DL + +LGH ++TT+IYT Sbjct: 232 YKLEKDLSRLADLLGHSSVTTTRIYT 257 >gi|188526796|gb|ACD62279.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 29/59 (49%), Positives = 39/59 (66%) Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 FQR ++ G+ T HTLRH FAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 100 FQRAFKRAVEQAGVAKPATPHTLRHLFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|54302869|ref|YP_132862.1| hypothetical protein PBPRB1190 [Photobacterium profundum SS9] gi|46916293|emb|CAG23062.1| hypothetical protein PBPRB1190 [Photobacterium profundum SS9] Length = 141 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 3/110 (2%) Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 KG K R +PL A+ ++ L P + ++ G Q+ +R + Sbjct: 8 AKGGKDRFIPLPRRTLYALRYFWQTHKHPCFL---FPSHNRVVDNFMDRGGVQKAMRVII 64 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + G+ S + H LRHS+ATHLL G DLRS+Q +LGH L++T YT++ Sbjct: 65 KECGITKSISPHNLRHSYATHLLEQGLDLRSVQHLLGHNSLNSTARYTHL 114 >gi|310658541|ref|YP_003936262.1| tyrosine recombinase [Clostridium sticklandii DSM 519] gi|308825319|emb|CBH21357.1| putative tyrosine recombinase [Clostridium sticklandii] Length = 371 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 75/279 (26%), Positives = 126/279 (45%), Gaps = 45/279 (16%) Query: 57 KITIQTIRQLSYTEIRAFISKRRTQ------------KIGDRSLKRSLSGIKSFLKYLKK 104 +ITI+ +L +I +I + T+ K +RSL R S + S KY+ Sbjct: 81 EITIEQFSKLKARDINYYIGEYCTRYLKSINGNDYLFKNDNRSLARKKSSLSSLFKYMY- 139 Query: 105 RKITTESNILNMRN-LKKSNSLPRALNE---KQALTLVDNVL----LHTSHETKW--IDA 154 R E+NI + N +K P A+ + + ++D V L + W Sbjct: 140 RNNQLENNITDGFNPIKLPKPQPDAIKKLAVDEVAIMLDIVSTGEGLTDKEKIYWEKTKL 199 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ AIL L GLR+SE L + + +I K K ++PL +++KA+ +Y Sbjct: 200 RDKAILLLFVTYGLRLSEIQQLNLSSFNYGRDEFKIYRKRSKEALMPLNSTIKKALDDYI 259 Query: 215 -------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPLSTT----- 261 DL L+ N + LF I+ K L + IR+L ++Y L + TT Sbjct: 260 SCERPNSDL----LDENNEDALFLSIQNKRLT----MKAIRELVKKYTSLAMGTTRDKGY 311 Query: 262 -AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 H LR + A+ L+ G + ++++L H ++TTQ+Y+ Sbjct: 312 SPHKLRATAASSLIDYGFSIYDVKTLLDHENITTTQLYS 350 >gi|288927179|ref|ZP_06421059.1| putative nicotinate-nucleotide pyrophosphorylase [Prevotella buccae D17] gi|315608605|ref|ZP_07883588.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] gi|288336048|gb|EFC74449.1| putative nicotinate-nucleotide pyrophosphorylase [Prevotella buccae D17] gi|315249708|gb|EFU29714.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] Length = 335 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 59/241 (24%), Positives = 105/241 (43%), Gaps = 23/241 (9%) Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA---LTLVDN 140 +R+L S I F +Y+ + M K + +PR ++ D+ Sbjct: 68 SERTLYDKWSIISQFSRYMCHCGFVC--YVPPMPRQKDKSFIPRVFTHEEIERFFIAADS 125 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRI 199 + H T + + + + +LY G+RI EAL+L +++ ++ T+ I + K + RI Sbjct: 126 LRFHNIQPTLCLFSMPT-LFRVLYATGIRIGEALNLNIEDVNLEKGTILIRKSKNQRQRI 184 Query: 200 VPLLPSVRKAI---LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 VP+ PS+ + + Y D P + + PLF G + G ++ R++ + + Sbjct: 185 VPITPSLDAVLHQYISYRDRMPLKSIRHKESPLFISHTGGRVLKGTAYKWFRKILKLCDI 244 Query: 257 PL-----STTAHTLRHSFATHLL----SNGGDLRSIQSIL----GHFRLSTTQIYTNVNS 303 P H LRH+FA H L +G D+ + IL GH L T+ Y + S Sbjct: 245 PFIGGNRGPRVHDLRHTFAVHSLMKQVKSGKDMYCLLPILSVFMGHKTLLGTESYIRLTS 304 Query: 304 K 304 + Sbjct: 305 E 305 >gi|222094274|ref|YP_002528333.1| site-specific integrase/recombinase [Bacillus cereus Q1] gi|229042377|ref|ZP_04190125.1| Integrase/recombinase [Bacillus cereus AH676] gi|221238331|gb|ACM11041.1| site-specific integrase/recombinase [Bacillus cereus Q1] gi|228726924|gb|EEL78133.1| Integrase/recombinase [Bacillus cereus AH676] Length = 330 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 67/286 (23%), Positives = 133/286 (46%), Gaps = 32/286 (11%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE------IRAFISKRRTQK 82 R L T++ Y + + FL L TE++I + ++ + TE + ++ R K Sbjct: 41 RNLRPFTIKYYLNELQAFLNLL---TEQEIDVSILKPYNMTEEHVKENVILYMKNYRGIK 97 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 + S+ L +++F +L K+K + + N++ LK + +++Q N L Sbjct: 98 VV--SINTRLRALRAFYNFLYKQKHIPRNPMENIKLLKDRKRIIPTFSKEQL-----NKL 150 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVP 201 H + + R+ I+ L+ G+RI+E + L+ ++I + S L I+ K + R VP Sbjct: 151 FHQPNLRTFTGVRDYTIMMLMLETGIRINELVGLSVKDIRWEDSLLVIRNAKSYRERQVP 210 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRY-----IRQLRRYLG 255 + ++ + +Y + + + N LF + G L G+ QR + Q++ Sbjct: 211 IQKDMKSQLKKYIAIRGY-VESN---ALFVTVDGTRLTRRGIQQRISIYGNMAQIK---- 262 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + + HT RH+FA + G ++ +Q+ILGH + + Y N+ Sbjct: 263 -DVRCSPHTFRHTFAKLSVQQGANIFELQAILGHTNMEIVKTYVNL 307 >gi|89147648|gb|ABD62683.1| integrase [uncultured bacterium] Length = 163 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 37/59 (62%) Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 Q ++ R + + HT RHSFATHLL NG D+R++Q +LGH + TT IYT+V Sbjct: 104 LQSAVKAAVRAAEIAKPASCHTFRHSFATHLLENGYDIRTVQELLGHTNVKTTMIYTHV 162 >gi|149916292|ref|ZP_01904812.1| Integrase [Roseobacter sp. AzwK-3b] gi|149809746|gb|EDM69598.1| Integrase [Roseobacter sp. AzwK-3b] Length = 157 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 74/152 (48%), Gaps = 14/152 (9%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLR-------IQGKGDKIRIVPLLPSVRKAIL 211 +L+ Y GLR E +L ++ DDQ +R Q KG + R V L +R+A+ Sbjct: 1 MLFSFY-AGLRAKEIAALKRGDVFDDQGAVRDQFILSAAQSKGGRTRTVYLNQRLRRALA 59 Query: 212 EYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 +Y LNL + + PLF +G + + + R +GL ++H+ R ++ Sbjct: 60 DYASA----LNLSDPKRPLFESQKGGHFSANTMCQLFLDIYRAVGLR-DASSHSGRRTYI 114 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 T L + G +R + + GH +STTQ Y +VN Sbjct: 115 TRLANKGVGVRLLAELAGHSHISTTQRYIDVN 146 >gi|13474966|ref|NP_106529.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|13474967|ref|NP_106605.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|14025715|dbj|BAB52315.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|14025792|dbj|BAB52391.1| integrase/recombinase [Mesorhizobium loti MAFF303099] Length = 332 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 80/292 (27%), Positives = 122/292 (41%), Gaps = 28/292 (9%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEE---KITIQTIRQLSYTEIRAFISK-RRTQKI 83 +R S TL SY DT F + LA+ + + T+ L + AF+ R + Sbjct: 22 QRQASPHTLASYR-DT--FCLLLAYAQRQLRKGASHVTLPDLDTAFLGAFLDHLERDRDN 78 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV-- 141 RS L+ I SF +Y+ E + L R L ++P ++ + + ++ Sbjct: 79 SARSRNVRLAAIHSFFRYVALH--APEHSALAQRVL----AIPSKRYVRRPVAFLTSIEV 132 Query: 142 --LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIR 198 LL WI R+ A+L L GLR +E + L ++I + + ++ QGKG K+R Sbjct: 133 AALLAAPDLGSWIGRRDRALLLLAVQTGLRAAEIVGLRCEDIVLGPAAYVQCQGKGRKLR 192 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ----RYIRQLRRYL 254 PL RK + + P F I G L+ Q +++ RR Sbjct: 193 NTPL----RKDTVTVLRAWLAERRGRSADPAFPTISGTSLSHDALQYLLNKHLAVARRDC 248 Query: 255 GLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 S T H LRH+ A LL +G D I LGH + TT IY + K Sbjct: 249 PSLASKHVTPHVLRHTLAMDLLQHGVDRSVIALWLGHESVETTAIYLQADMK 300 >gi|294617320|ref|ZP_06696960.1| transposase A [Enterococcus faecium E1679] gi|291596429|gb|EFF27682.1| transposase A [Enterococcus faecium E1679] Length = 361 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 99/217 (45%), Gaps = 37/217 (17%) Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 K FL ++ K + + N+L +R KK R L ++ ++D HT Sbjct: 139 FKGFLHHVNKGRY--QKNVLKLRVKKKQ---IRTLRSEEVKQIIDAC--HTK-------- 183 Query: 155 RNSAILYLLYGCGLRISEALSL--------------TPQNIMDDQSTLRIQGKGDKIRIV 200 R+ IL L+Y GLRI E LSL TP+++ +++ ++++ K I + Sbjct: 184 RDKLILMLMYEGGLRIGEVLSLRLEDIVTWDNQIHLTPRDVNVNEAYIKLR-KERTIHVS 242 Query: 201 PLLPSVRKA--ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 L S+ I EY + D + + L G GKPL +R++ + G+ Sbjct: 243 KELMSLYTDYLIYEYSEELEHDY---VFISLKEGYFGKPLKYQSVLDLVRRIVKRTGIEF 299 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 T+H LRH+ AT L+ G D+ +Q LGH + TT Sbjct: 300 --TSHMLRHTHATQLIREGWDVAFVQKRLGHAHVQTT 334 >gi|170690856|ref|ZP_02882022.1| integrase domain protein SAM domain protein [Burkholderia graminis C4D1M] gi|170144105|gb|EDT12267.1| integrase domain protein SAM domain protein [Burkholderia graminis C4D1M] Length = 261 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 55/192 (28%), Positives = 86/192 (44%), Gaps = 8/192 (4%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 R+ L+++ ER S T SY L F A I T++ LS T +R F+ Sbjct: 12 RRFMLEHMVAERNFSPNTQASYRDTLTLLLPFAAKLGGFAIDRMTVKDLSPTIVRQFLDH 71 Query: 78 RRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALNEKQA 134 + G + LS + S +++ S +R++ KK+ EK Sbjct: 72 VECDRHCGGATRNLRLSALHSLARFIGMHSPVHLSWCSEVRSIPFKKTARTLIGYLEKSE 131 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGK 193 + + LL I+AR+ A+L LY G R EA LT + + + ST+RI GK Sbjct: 132 M----DALLAAPDRRTAIEARDYALLLFLYNSGARADEAAKLTIGRLQLTEPSTVRILGK 187 Query: 194 GDKIRIVPLLPS 205 G+K+R+ PL P+ Sbjct: 188 GNKMRVCPLWPT 199 >gi|172034831|ref|YP_001798608.1| integrase/recombinase [Cyanothece sp. ATCC 51142] gi|171701595|gb|ACB54574.1| probable integrase/recombinase [Cyanothece sp. ATCC 51142] Length = 290 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 99/231 (42%), Gaps = 22/231 (9%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S+ +S IKS Y K LN+ K+ S AL+E+ L+ + Sbjct: 78 SIALKISIIKSLFSYAWKIGYLP----LNIAKAVKAPSSVNALHERILEQPEVKALIEAA 133 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----MDDQSTLRIQGKGDKIRIVPL 202 E R+ IL L+Y GLR +EALS+ +++ Q+T I GKG K+R V + Sbjct: 134 KE-----GRDRTILTLIYATGLRATEALSINWRDLRPRKQGGQAT--ITGKGGKVRTVLI 186 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 ++ K + + P +F G L+ R +++ G+ T+ Sbjct: 187 SDNLWKELKK----LPRSQKTE---AVFTTRFGNRLDRHQLHRIVKKTAEKAGINEHTST 239 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 H LRH+ A H L NG D+ + LGH L+ T Y + G ++I Sbjct: 240 HWLRHAHACHSLENGCDIDVLMRSLGHSSLTITSKYLHARPNEGSSQFIDI 290 >gi|229010701|ref|ZP_04167898.1| Tn554-related, transposase A [Bacillus mycoides DSM 2048] gi|228750375|gb|EEM00204.1| Tn554-related, transposase A [Bacillus mycoides DSM 2048] Length = 350 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 58/235 (24%), Positives = 113/235 (48%), Gaps = 35/235 (14%) Query: 80 TQKIGDRSLKRSLSG----IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 +Q +G++ +++ +G KSFL ++ K K S+I N+ +K+ + L ++Q Sbjct: 99 SQDMGEKLMRQFFTGGRTRYKSFLHHVNKDK----SSIRNVLKVKEPRKRIQILTKEQ-- 152 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQG 192 V L+ T+ + R++ ++ LL+ GLRI EALSL ++ D +R+ Sbjct: 153 --VQQTLVATT------NIRDTFLIQLLFETGLRIGEALSLFLEDFQFDYGKGHRIRLTD 204 Query: 193 KGD-----KIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGI-RGKPLNP 240 +G+ K++ V +A+++ YD + +++ N RG +GKP+ Sbjct: 205 RGELENGAKLKTGEREIFVSQALMDLYDDYLYEVIDELNIDTNFVFVKLRGENKGKPMTY 264 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 + ++LR+ ++ H RH+ AT D++ +Q LGH ++ TT Sbjct: 265 SDVEAMFKRLRQ--KTRINVHPHLFRHTHATMYYQETKDIKQVQERLGHSQIQTT 317 >gi|218905655|ref|YP_002453489.1| transposase A [Bacillus cereus AH820] gi|218538676|gb|ACK91074.1| transposase A [Bacillus cereus AH820] Length = 361 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 38/218 (17%) Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 K FL ++ K K + + NIL +R KK + + L +Q ++D HT Sbjct: 140 FKGFLYHISKGK-SYQKNILKLRVKKK---IVQVLEHEQVKAIIDAC--HTK-------- 185 Query: 155 RNSAILYLLYGCGLRISEALSL--------------TPQNIMDDQSTLRIQGKGDKIRIV 200 R+ ++ L+Y GLR+ E LSL TP++ ++ + ++++ K KI + Sbjct: 186 RDKLLIMLMYEGGLRVGEVLSLRIEDISTWDNQINITPRDHNENGAYIKLR-KERKIDVS 244 Query: 201 PLLPSVRKAIL--EYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 L ++ L EY + D + +N++ F GKPL IR+L + G+ Sbjct: 245 KELMALYTDYLVHEYGEDLEHDYIFINLKESYF----GKPLKYQSVLDLIRRLVKRTGIT 300 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 TAH LRH+ AT L+ +G D +Q LGH + TT Sbjct: 301 F--TAHMLRHTHATELIRSGWDAAYVQKRLGHAHVQTT 336 >gi|94442268|dbj|BAE93633.1| integron integrase [uncultured bacterium] Length = 162 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 26/40 (65%), Positives = 32/40 (80%) Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +H RHSFATHLL NG D+R+IQ +LGH +STT IYT+V Sbjct: 122 SHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161 >gi|228969782|ref|ZP_04130546.1| Integrase/recombinase [Bacillus thuringiensis serovar sotto str. T04001] gi|228789934|gb|EEM37752.1| Integrase/recombinase [Bacillus thuringiensis serovar sotto str. T04001] Length = 304 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 61/290 (21%), Positives = 134/290 (46%), Gaps = 23/290 (7%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 +N I++G S+ T+ SY D + F + + + I++ + R ++ ++ + Sbjct: 6 RNYLIDKGKSRNTVISYINDLQVFFQEMGVNPDSYVISNDIKKWT----RDMLNPKKGKA 61 Query: 83 IGDRSLKRSLSGIKSFLKYLKKR---KITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + ++ R L+ ++S+ + ++ ++ ++I +++ + + + L EK+ L++ Sbjct: 62 LSVSTINRRLNTLRSYFSWAERENYIRVNPMTDIKDLKMVDEEHEKIMWLTEKEFEELLE 121 Query: 140 NVLLHTSHETKWIDA-----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 + + +T+ ++A R+ I+Y+L GLR+ E +L +I D +R+ GKG Sbjct: 122 RMRKYPI-KTRGVNAEEKYRRDRVIIYILTYAGLRVEELSNLKITDIDLDVKKIRVVGKG 180 Query: 195 DKIRIVPLLPSVRKAILEYYDL---CPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQ 249 +K+R +P+ + ILE+ + + P L+ GK G+ Sbjct: 181 NKVRTIPMSNFLYNEILEWLQFRSKVSNEKEIVSHSPFLLYSQRSGKFSIRGIQN----M 236 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRLSTTQIY 298 + Y T H RH+F +L + D+ ++ + GH +STT Y Sbjct: 237 IENYSTPDKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSHISTTTRY 286 >gi|228943482|ref|ZP_04105925.1| Integrase-recombinase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228976122|ref|ZP_04136621.1| Integrase-recombinase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228783597|gb|EEM31677.1| Integrase-recombinase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816192|gb|EEM62374.1| Integrase-recombinase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 390 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 66/153 (43%), Gaps = 10/153 (6%) Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 N IL L G RI E + +++ D + L++ GKGDK+R + + + + I E Sbjct: 218 NYTILLALASTGARIQELCNARVKDLHYDGKYWLKVTGKGDKVRELFISEHLYQCICEMR 277 Query: 215 DL--CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266 C L + PLF RG N + + + L TAHT R Sbjct: 278 RRRGCQTVLEKGDESPLFINQRGNTYNSKTLSNQVTDMVKKTNLEFLLYRENPVTAHTFR 337 Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298 H+FA + G DL + LGH + TT+IY Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370 >gi|188526777|gb|ACD62270.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 29/60 (48%), Positives = 39/60 (65%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 FQR ++ G+ T HTLRHSFAT LL + D+R++Q +LGH +STT IYT+V Sbjct: 99 TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSSYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|217968816|ref|YP_002354050.1| integrase [Thauera sp. MZ1T] gi|217506143|gb|ACK53154.1| integrase family protein [Thauera sp. MZ1T] Length = 411 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 80/282 (28%), Positives = 122/282 (43%), Gaps = 15/282 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 LE ER L+ T+ Y R+FL + E + + ++ F+ + + Sbjct: 125 LERERRLAPATVFHYLEFARRFLAQMVPKGEASLA-----HVQAADVVDFVQREAARLHH 179 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITT---ESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 + K + ++SFL+Y + R + + ++ + N + SLPRAL+ A+ L Sbjct: 180 AKRAKLMTTAVRSFLQYARYRGLIEADLKPSVPAVANWSMA-SLPRALS---AVEL--QR 233 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 LL + + RN AIL LL GLR E +LT +I + L IQG G +P Sbjct: 234 LLASCERGTAVGRRNWAILLLLARLGLRAGEVTALTLDDIDWAAAELCIQGAGVSANRLP 293 Query: 202 LLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 L V A+ +Y D P + + + + RG + V R L R P Sbjct: 294 LPHEVGAALADYLRDGRPACTSRRVFVRMRAPTRGFKSSSAVSTVVRRALARAGLDPAHH 353 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 AH LRH+ AT +L G L I +L H TT IY V+ Sbjct: 354 GAHLLRHTVATQMLRQGASLAEIGELLRHRSPQTTMIYAKVD 395 >gi|157369299|ref|YP_001477288.1| integrase family protein [Serratia proteamaculans 568] gi|157321063|gb|ABV40160.1| integrase family protein [Serratia proteamaculans 568] Length = 197 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 1/150 (0%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE-Y 213 R++ ++++ + G R+SE L ++ D L I + + L + K +L+ + Sbjct: 31 RDTCLIWMGFIHGCRVSELTGLRLADLDMDDGCLYISRLKNGLSTTHPLETTEKRLLQRW 90 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 + F NL+ Q LF +G L+ R +R+ R GL + H LRH+ L Sbjct: 91 LEKRQFCRNLDDQDWLFLSQKGYRLSRQRIFRMLREYGRRAGLEVEAHPHMLRHACGYAL 150 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 NG D R IQ LGH + T +YT N+ Sbjct: 151 ADNGADTRVIQDYLGHRNIQHTVLYTAANA 180 >gi|260467249|ref|ZP_05813424.1| integrase family protein [Mesorhizobium opportunistum WSM2075] gi|259028939|gb|EEW30240.1| integrase family protein [Mesorhizobium opportunistum WSM2075] Length = 160 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 41/67 (61%) Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 P++ R +++ G+ + HTLRHSFATHLL D+R IQ +LGH +L TT Sbjct: 70 PISSRQLHRAVQEAAEVAGIRKRVSPHTLRHSFATHLLEQDVDIRVIQVLLGHSKLETTA 129 Query: 297 IYTNVNS 303 +YT V++ Sbjct: 130 LYTKVST 136 >gi|323486907|ref|ZP_08092223.1| hypothetical protein HMPREF9474_03974 [Clostridium symbiosum WAL-14163] gi|323691955|ref|ZP_08106204.1| integrase [Clostridium symbiosum WAL-14673] gi|323399770|gb|EGA92152.1| hypothetical protein HMPREF9474_03974 [Clostridium symbiosum WAL-14163] gi|323503964|gb|EGB19777.1| integrase [Clostridium symbiosum WAL-14673] Length = 350 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 60/271 (22%), Positives = 115/271 (42%), Gaps = 27/271 (9%) Query: 41 CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD-----RSLKRSLSGI 95 C+ R F + + I+ + + E F+ T+K D R + R ++ + Sbjct: 69 CEMRDFSL---------TVLDEIQVMDFEEYMEFLKCHSTEKREDLVNTERGIMRKIASL 119 Query: 96 KSFLKYL--KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153 KSF Y +R + ++ + L + + ++E +L + + K Sbjct: 120 KSFYNYFYRHERIKNNPAALVQLPKLHEKEIIRLEVDEVASLLDQVEAGAQLTEKQKAFH 179 Query: 154 A----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 A R+ A++ LL G G+R+SE + L ++ + +RI KG K IV V A Sbjct: 180 AKTKIRDLALMTLLLGTGIRVSECVGLNINDVDFNTGGIRIHRKGGKEVIVYFGAEVEDA 239 Query: 210 ILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + +Y + P + LF ++ K LN + +++ + + T H L Sbjct: 240 LADYMAERKHITP---EPGHEDALFLSLQKKRLNVRSVENLVKKYAKIVTPLKKITPHKL 296 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 R ++ T+L GD+ + +LGH ++TT+ Sbjct: 297 RSTYGTNLYRETGDIYLVADVLGHEDVNTTK 327 >gi|126657051|ref|ZP_01728222.1| phage integrase [Cyanothece sp. CCY0110] gi|126621594|gb|EAZ92304.1| phage integrase [Cyanothece sp. CCY0110] Length = 359 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 60/258 (23%), Positives = 109/258 (42%), Gaps = 52/258 (20%) Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRK----------ITTESNI---------------LNM 116 K +RS+ +L+ + +F +Y K ITT N + Sbjct: 100 KRSERSINLALTAVTTFYEYHDAHKNIDPKKFDRLITTRGNTRRGLLDGISKSKPTRQKL 159 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 LK+ P L ++Q TLV+N H R+ ++ LL G G+R+ E L L Sbjct: 160 VKLKEPKKFPGCLTDEQVETLVNNC-----HR-----LRDKFLILLLNGTGIRVGELLGL 209 Query: 177 TPQNIMDDQSTL----------RIQGKGDKIRIVPLLPSVRKAILEY--YDLCPFDLNLN 224 +++ D + KG + R +P++P + + +Y Y+ + N Sbjct: 210 QHEDVGDGSDYFIHVRKRRHGNEARAKGQE-RTIPVIPELLQMYNDYLIYEYPEVESNY- 267 Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284 + + ++ G G P+ V +L + G+ + H RH++AT LL G + ++ Sbjct: 268 VFVNIWEGAIGMPMKAPVINTMFTRLSKKTGIKVY--PHLFRHTYATRLLKAGMRVDRVK 325 Query: 285 SILGHFRLSTT-QIYTNV 301 +LGH + TT IY+++ Sbjct: 326 YLLGHASVQTTLDIYSHI 343 >gi|240172885|ref|ZP_04751544.1| phage integrase family protein [Mycobacterium kansasii ATCC 12478] Length = 372 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 81/294 (27%), Positives = 117/294 (39%), Gaps = 49/294 (16%) Query: 42 DTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKY 101 D QFL L E+ I + T+R S T I F S + G ++ + Sbjct: 74 DVDQFLADLR-SQEKPIALSTLRSYSNT-ISMFCSYVSDGRYG-------------WVAF 118 Query: 102 LKKRKITTESNIL---NMRNLKKSNSLP---RALNEKQALTLVDNV--LLHTSHET---K 150 +K+ S I N +++P RA + + L D V + +H T + Sbjct: 119 CEKQFGDVPSQICFEWNTPQHTTDDAVPPRRRAFTKAELQHLFDAVDDFVDEAHRTGSKR 178 Query: 151 WIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQS----------TLR----IQGKGD 195 W+ A R+S + Y GLR E + L + + T+R +G G Sbjct: 179 WLTALRDSTAFKIGYAYGLRRRELVMLDLTDFGPNPHVPTYGNYGALTVRWAKGTKGSGP 238 Query: 196 KIRIVPLLPSVRKAI--LEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQ 249 + R V P A+ L+Y+ C L + L+ RG L R Sbjct: 239 RRRTVLTSPEFAWAVELLQYW--CSEGRQLFSTADRSPALWPSERGGRLTLNALGRSFTA 296 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 R+ GLP + H LRHSF THLL G D +Q LGH STT +YT+V S Sbjct: 297 FRQRAGLPPELSLHALRHSFTTHLLEAGYDPLFVQQQLGHSFASTTSLYTSVTS 350 >gi|301299655|ref|ZP_07205912.1| conserved hypothetical protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852749|gb|EFK80376.1| conserved hypothetical protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 75 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 28/55 (50%), Positives = 37/55 (67%) Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 R L +GL + T H RH+FAT LL +G D+R IQ ILGH ++ TQIYT+V+ Sbjct: 3 RNLPYKMGLEIKITPHMFRHTFATMLLESGVDIRYIQQILGHSSIAVTQIYTHVS 57 >gi|319744173|gb|EFV96543.1| phage integrase family integrase/recombinase [Streptococcus agalactiae ATCC 13813] Length = 328 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 59/250 (23%), Positives = 113/250 (45%), Gaps = 27/250 (10%) Query: 63 IRQLSYTEIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118 IRQ+S +++R +++ +R++ K+ +++R S SF +L+ +S + + Sbjct: 89 IRQISTSDLRTYLANYQKERQSSKVTIDNMRRIFS---SFFSWLEDEDYILKSPVRRIHK 145 Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178 +K + L+++ L D + R+ A++ LL G+R+ E + L Sbjct: 146 IKTDKVIKETLSDESLELLRDTC----------DNIRDLAMIDLLASTGMRVGELVRLNR 195 Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD---LNLNIQLPLFRGIRG 235 ++I + + GKG+ RIV + ++ Y D D L +++ P R + G Sbjct: 196 EDINFHERECLVFGKGNSERIVYFDARTKIHLINYLDSRKDDSSALFVSLAYPYDRLMIG 255 Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 GV R +R++ + L H R + AT + G + +Q +LGH ++ TT Sbjct: 256 -----GVETR-LREIGKRANLQ-KVHPHKFRRTLATRAIDKGMPIEQVQHLLGHVKIDTT 308 Query: 296 QIYTNVNSKN 305 Y VN N Sbjct: 309 MHYAMVNQAN 318 >gi|223369820|gb|ACM88779.1| integrase [uncultured bacterium] Length = 163 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 43/69 (62%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 +R + +QR I++ + T+HT RHSFAT LL +G D+R++Q +LGH + Sbjct: 94 VRRHHMYEQTYQRAIQRAATEAKITKRVTSHTFRHSFATQLLESGYDIRTVQELLGHSDV 153 Query: 293 STTQIYTNV 301 STT IYT+V Sbjct: 154 STTMIYTHV 162 >gi|308183658|ref|YP_003927785.1| integrase/recombinase (xerD) [Helicobacter pylori PeCan4] gi|308065843|gb|ADO07735.1| integrase/recombinase (xerD) [Helicobacter pylori PeCan4] Length = 355 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 71/267 (26%), Positives = 122/267 (45%), Gaps = 29/267 (10%) Query: 48 IFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKR 105 +FL F Y + + +++ R LS ++ F+ + Q S+ + + ++ F YL +K+ Sbjct: 77 LFLFFEYFRDNLKLRSFRMLSEEQVINFLFEL-AQNRKPSSMAKYVMYLRQFFDYLDRKK 135 Query: 106 KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165 + + N+ K SLPR LN K + + +L + T + RN +L ++ Sbjct: 136 HYNFDFALKNLAFAKTKESLPRHLNYKDLKSFLKTLLEYKP--TTSFEKRNKCVLLIVML 193 Query: 166 CGLRISEALSLTPQNIMDDQS--TLRIQGKGDK-----IRIVPLLPSVRKAILEYYDLCP 218 GLR E L++ ++I ++ ++ IQGKG K I+ L PS+ + + Y L Sbjct: 194 GGLRKCEVLNIELKHIQVEEQNYSILIQGKGRKERKAYIKKSLLEPSLNAWLSDDYRLKY 253 Query: 219 FDLNLNIQLPLFRGIRGKPLN--------PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 F+ LF+ + K N P +F+ + Q++ Y T H RHSFA Sbjct: 254 FN-----GAYLFKKDKQKSQNSLTLYNFIPLIFK--LAQIKHYK--QYGTGLHLFRHSFA 304 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQI 297 T + DL LGH L +T+I Sbjct: 305 TLIYQETQDLVLTSRALGHSSLLSTKI 331 >gi|229191399|ref|ZP_04318384.1| Integrase-recombinase [Bacillus cereus ATCC 10876] gi|228592081|gb|EEK49915.1| Integrase-recombinase [Bacillus cereus ATCC 10876] Length = 390 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 66/153 (43%), Gaps = 10/153 (6%) Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 N IL L G RI E + +++ D + L++ GKGDK+R + + + + I E Sbjct: 218 NYTILLALASTGARIQELCTARVKDLHYDGKYWLKVTGKGDKVRELFISEHLYQCICEMR 277 Query: 215 DL--CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266 C L + PLF RG N + + + L TAHT R Sbjct: 278 RRRGCQTVLEKGDESPLFINQRGNTYNSKTLSNQVTDMIKKTNLEFLLYRENPVTAHTFR 337 Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298 H+FA + G DL + LGH + TT+IY Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370 >gi|94442294|dbj|BAE93646.1| integron integrase [uncultured bacterium] Length = 162 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 26/40 (65%), Positives = 32/40 (80%) Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +H RHSFATHLL NG D+R+IQ +LGH +STT IYT+V Sbjct: 122 SHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161 >gi|171057459|ref|YP_001789808.1| integrase family protein [Leptothrix cholodnii SP-6] gi|170774904|gb|ACB33043.1| integrase family protein [Leptothrix cholodnii SP-6] Length = 417 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 93/187 (49%), Gaps = 13/187 (6%) Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 +SLP+ L +++ LV ++ ++ + + R AI+ GLR E L+ +I Sbjct: 227 SSLPKKLTDEEVAQLVGSL----NNPCRAMR-RACAIVRCALDLGLRSIEVAQLSLDDID 281 Query: 183 DDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGI--RGKPL 238 T+ + KG ++ I+PL + +AI Y +L P N I R + R P+ Sbjct: 282 WHAGTITLRHTKGRRVDILPLPVATGEAIARYLELERPKTTNRAI---FVRNVAPRDAPI 338 Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + + IRQ GLP T +H LRH+ A LL++G L+ + +L H L+TT IY Sbjct: 339 GADLIRITIRQAYARAGLPY-TRSHLLRHTMANRLLASGSTLKEVADVLRHRSLNTTMIY 397 Query: 299 TNVNSKN 305 ++S++ Sbjct: 398 AKLDSRS 404 >gi|227529436|ref|ZP_03959485.1| phage integrase/recombinase [Lactobacillus vaginalis ATCC 49540] gi|227350646|gb|EEJ40937.1| phage integrase/recombinase [Lactobacillus vaginalis ATCC 49540] Length = 322 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 67/286 (23%), Positives = 129/286 (45%), Gaps = 23/286 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L ++E G S+ T+ Y+ + +L + + KIT + +R + + R Sbjct: 50 DYLAAKQVE-GCSEKTINYYQVTLKMMFSYLGKHVQ-KITTEDLRDY----LGNYQQSRN 103 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + ++ +++R S SF +L+ + +S + + +K S + +++ L D Sbjct: 104 SSRVTIDNIRRIFS---SFFSWLEDEDVIIKSPVRRIHKVKSSAKVKDTYSDEDLERLRD 160 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 H + E R+ A++ +L G+RI E ++L +I D+ + GKG+K RI Sbjct: 161 ----HCNSE------RDVAMIDILASTGMRIGELVNLNQNDINFDERECVVLGKGNKQRI 210 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 V + K L+ Y D N + + L + +N G+ R ++ L + G+ Sbjct: 211 V-YFDARSKIHLQNYLAKRKDANSALFVSLHAPHQRMSIN-GIENR-LKSLGKKAGIA-K 266 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 H R + AT+ + G + +Q +LGH R+ TT Y V N Sbjct: 267 VYPHKFRRTLATNAIDKGMPIEQVQKLLGHERIDTTLHYAMVKQSN 312 >gi|94442284|dbj|BAE93641.1| integron integrase [uncultured bacterium] Length = 162 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 26/40 (65%), Positives = 32/40 (80%) Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +H RHSFATHLL NG D+R+IQ +LGH +STT IYT+V Sbjct: 122 SHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161 >gi|94442300|dbj|BAE93649.1| integron integrase [uncultured bacterium] Length = 162 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 26/40 (65%), Positives = 32/40 (80%) Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +H RHSFATHLL NG D+R+IQ +LGH +STT IYT+V Sbjct: 122 SHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161 >gi|94442282|dbj|BAE93640.1| integron integrase [uncultured bacterium] Length = 162 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 3/98 (3%) Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 PS K+ + Y F N P ++ ++ Q+ I++ + +H Sbjct: 67 PSAAKSWMWQY---AFPSNQRCFAPDLGTMKRHHVHQTSVQKAIKRAVTRCNINKRVGSH 123 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 RHSFATHLL NG D+R+IQ +LGH +STT IYT+V Sbjct: 124 AFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161 >gi|30908740|gb|AAP37602.1| IntI [uncultured bacterium] Length = 161 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 38/57 (66%) Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 R ++Q + + HTLRHSFATHLL +G D+R++Q +LGH + TT IYT+V Sbjct: 105 RGVKQAAHAARIDKHVSCHTLRHSFATHLLEDGYDIRTVQELLGHSSVETTMIYTHV 161 >gi|94442278|dbj|BAE93638.1| integron integrase [uncultured bacterium] Length = 162 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 26/40 (65%), Positives = 32/40 (80%) Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +H RHSFATHLL NG D+R+IQ +LGH +STT IYT+V Sbjct: 122 SHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161 >gi|189459809|ref|ZP_03008594.1| hypothetical protein BACCOP_00438 [Bacteroides coprocola DSM 17136] gi|189433419|gb|EDV02404.1| hypothetical protein BACCOP_00438 [Bacteroides coprocola DSM 17136] Length = 413 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 74/162 (45%), Gaps = 22/162 (13%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQS----------TLRIQGKGDKIRIVPLLPSVRKA 209 L+ C GL ++ +L P+++ D + L + K I VPLLP V A Sbjct: 252 FLFACFTGLAFADVSTLRPEHLEQDNNGDWWIRKGRVKLERRRKSSSIANVPLLP-VPLA 310 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 IL+ Y+ P L LP+ + Y++++ + G+ + T H RH+F Sbjct: 311 ILKKYESHPICLKQGTCLPVVCNQKA--------NSYLKEIADFCGIKKNLTTHAARHTF 362 Query: 270 ATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 AT + L+N L+ + ++LGH TQ Y V +N D M Sbjct: 363 ATTVTLANNVPLQEVSAMLGHASTRMTQHYARVMDRNLKDNM 404 >gi|293402584|ref|ZP_06646711.1| integrase/recombinase, phage integrase family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291303976|gb|EFE45238.1| integrase/recombinase, phage integrase family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 327 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 60/252 (23%), Positives = 113/252 (44%), Gaps = 27/252 (10%) Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDR----SLKRSLSGIKSFLKYLKKRKITTESNILNM 116 + +++++ +IR+++++ ++ K R +++R LS SF +L+ +S + + Sbjct: 86 KNVKEITTDDIRSYLTEYQSNKNSSRVTIDNIRRILS---SFFSWLEDEDYILKSPVRRI 142 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 +K +++ +++ + DN + R+ A++ LL G+RI E + L Sbjct: 143 HKVKTVSNIKETYSDETLELIRDNC----------NEIRDLALIDLLASTGMRIGELVLL 192 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 +I + + GKGDK R+V + + Y D D N LF ++ Sbjct: 193 NRNDINFYERECVVFGKGDKERVVYFDARAKIHLKNYLDSRTDDNN-----ALFVTLKA- 246 Query: 237 PLNP---GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 P N G + +R L + LGL H R + AT + G + +Q +LGH R+ Sbjct: 247 PFNRITIGGIETRLRTLGKQLGLS-KVHPHKFRRTLATMAIDKGMPIEQLQQLLGHRRID 305 Query: 294 TTQIYTNVNSKN 305 TT Y V N Sbjct: 306 TTLQYAMVKQSN 317 >gi|94442292|dbj|BAE93645.1| integron integrase [uncultured bacterium] Length = 162 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/40 (65%), Positives = 32/40 (80%) Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +H RHSFATHLL NG D+R+IQ +LGH +STT IYT+V Sbjct: 122 SHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161 >gi|152975083|ref|YP_001374600.1| phage integrase family protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023835|gb|ABS21605.1| phage integrase family protein [Bacillus cytotoxicus NVH 391-98] Length = 304 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 66/305 (21%), Positives = 129/305 (42%), Gaps = 18/305 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFL---AFYTEEKITIQTIRQLSYTEIRAFI 75 Q +L + E+ R LSK TL+SY+ ++F F + +K+T + ++ I Sbjct: 8 QEFLDDREL-RNLSKHTLKSYKGILKRFESFCVNKGIFDTDKVTSKVAKEF-------LI 59 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 + K ++ +K + KYL++ I E N K +++ L ++Q Sbjct: 60 YCKHELKNSISTINEKNRTLKVYFKYLEEEGIV-EENPFKKIKFSKEDTITDVLTDEQVK 118 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 +++++ T + RN ++ LL GLR E ++L +I T+ GK Sbjct: 119 SVLEHFDRGHYKGTNFALMRNRMVIVLLISTGLRREELVNLKWSDIDMRNRTIMTYGKKR 178 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYL 254 + +P ++K + EY F ++ +F + L ++L++ L Sbjct: 179 TVATIPYTRKLQKELAEYKTFLEFYFEEEKEVVYVFPDKWNRQLTTEAISTLFKRLKKNL 238 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 + T H R FA+ L G D ++Q ++ H L T+ Y + G + ++ Sbjct: 239 NME-GLTCHAFRRYFASKCLKMGMDSLNLQKLMRHETLQMTERYVKL----YGHALHDVN 293 Query: 315 DQTHP 319 D+ +P Sbjct: 294 DKYNP 298 >gi|228911955|ref|ZP_04075682.1| Integrase-recombinase [Bacillus thuringiensis IBL 200] gi|228847676|gb|EEM92603.1| Integrase-recombinase [Bacillus thuringiensis IBL 200] Length = 390 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 66/153 (43%), Gaps = 10/153 (6%) Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 N IL L G RI E + +++ D + L++ GKGDK+R + + + + I E Sbjct: 218 NYTILLALASTGARIQELCTARVKDLHYDGKYWLKVTGKGDKVRELFISEHLYQCICEMR 277 Query: 215 DL--CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266 C L + PLF RG N + + + L TAHT R Sbjct: 278 RRRGCQTVLEKRDESPLFINQRGNAYNSKTLSNQVTDMIKKTNLEFLLYRENPVTAHTFR 337 Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298 H+FA + G DL + LGH + TT+IY Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370 >gi|227515184|ref|ZP_03945233.1| integrase XerD [Lactobacillus fermentum ATCC 14931] gi|227086516|gb|EEI21828.1| integrase XerD [Lactobacillus fermentum ATCC 14931] Length = 292 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 67/281 (23%), Positives = 122/281 (43%), Gaps = 19/281 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q WL ++G +KLT+ SY D R +L T +T +Q+ + A++ Sbjct: 16 QEWL----TKKGGAKLTIASYLTDLRDTAAYL---TSRGVT--NWQQVDRATLTAYLQSL 66 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + +++R +S ++ F YL+ + ++ + P L ++A L Sbjct: 67 NDKGRRTTTIQRRISSLRRFYAYLQVTGQVNHDPVALLKAKQTPRLAPVGLTPQEADLLP 126 Query: 139 DNVLLHTSHETKWID-ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 D+V K + RN A++ LL G R +E L + +D + + G+ + Sbjct: 127 DHV------PGKGVARERNRALVALLVATGARANELRDLQTGD-LDLELGVVYLGQSSR- 178 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 R+VPL + L Y D + + +F RG+PL+ + + + Sbjct: 179 RLVPLNEQA-QTYLTTYLTARADQSATDEGYVFLNNRGQPLSRQSIWEIVNATGQRANIE 237 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + T +R FA LL++G DL +Q ++GH + TTQ+Y Sbjct: 238 GAVTPQRVRDGFAYRLLAHGADLSLVQQLMGHQSILTTQVY 278 >gi|94442280|dbj|BAE93639.1| integron integrase [uncultured bacterium] Length = 162 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/40 (65%), Positives = 32/40 (80%) Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +H RHSFATHLL NG D+R+IQ +LGH +STT IYT+V Sbjct: 122 SHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161 >gi|254513217|ref|ZP_05125282.1| tyrosine recombinase [Rhodobacteraceae bacterium KLH11] gi|221532221|gb|EEE35217.1| tyrosine recombinase [Rhodobacteraceae bacterium KLH11] Length = 146 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 4/86 (4%) Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 G+ P + +R + S + H RHS AT +L NG D+R IQ +LGH +L T Sbjct: 41 GEAFTPNRMTQLVRGHINAAEIGKSGSCHLFRHSCATLMLENGADIRYIQQLLGHAKLDT 100 Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPS 320 TQIYT V+ + + +I+ THP+ Sbjct: 101 TQIYTQVSIRQ----LKQIHTLTHPA 122 >gi|94442256|dbj|BAE93627.1| integron integrase [uncultured bacterium] Length = 162 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/40 (65%), Positives = 32/40 (80%) Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +H RHSFATHLL NG D+R+IQ +LGH +STT IYT+V Sbjct: 122 SHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161 >gi|60550182|gb|AAX24185.1| integrase [Xanthomonas campestris pv. campestris] Length = 327 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 81/182 (44%), Gaps = 39/182 (21%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYD----- 215 LLYG G+R+ E L L +++ + + ++ GKG K R VPL S+R ++ + Sbjct: 131 LLYGSGMRLLECLRLRIKDVDMVRCEIVVRDGKGGKDRRVPLPRSLRGESMQQRERALLL 190 Query: 216 --LCPFDLNLNIQLP--LFRGIRGKPLNPGVFQRYIRQLRRYL----------------- 254 + + LP L R + PG +Q RR + Sbjct: 191 HAADLAEGAGQVFLPHALARKYPSADVEPG-WQYLFPGARRSVDPRSGRVGLHHVSEEIR 249 Query: 255 -----------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 G+ T HTLRHSFATH G D+R++Q +LGH ++TTQIYT+V Sbjct: 250 QRAVHAARRRAGIDKPATCHTLRHSFATHPPEAGHDIRTVQELLGHKDVATTQIYTHVLG 309 Query: 304 KN 305 + Sbjct: 310 RG 311 >gi|94442266|dbj|BAE93632.1| integron integrase [uncultured bacterium] Length = 162 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/40 (65%), Positives = 32/40 (80%) Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +H RHSFATHLL NG D+R+IQ +LGH +STT IYT+V Sbjct: 122 SHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161 >gi|327404928|ref|YP_004345766.1| integrase family protein [Fluviicola taffensis DSM 16823] gi|327320436|gb|AEA44928.1| integrase family protein [Fluviicola taffensis DSM 16823] Length = 420 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 10/129 (7%) Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 VPLLP + IL Y + L N LP+ R + Y++++ G+ Sbjct: 296 VPLLP-IPLEILSKYQDHEYCLKYNKLLPVNSNQR--------YNSYLKEIADLCGIKKK 346 Query: 260 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 T+H RH+FAT + L+NG + ++ ++LGH + TTQIY V + D M+++ Sbjct: 347 LTSHIARHTFATTVTLANGVPIETVSAMLGHSNIRTTQIYAKVVEQKVSDDMLKLKSILQ 406 Query: 319 PSITQKDKK 327 TQK+ K Sbjct: 407 SKTTQKEMK 415 >gi|309802554|ref|ZP_07696658.1| site-specific recombinase, phage integrase family [Bifidobacterium dentium JCVIHMP022] gi|308220618|gb|EFO76926.1| site-specific recombinase, phage integrase family [Bifidobacterium dentium JCVIHMP022] Length = 273 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 41/212 (19%) Query: 97 SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156 SF ++++ + + + ++++ + PR +K L+ + + Sbjct: 80 SFFRWIRAHDLRDDDPSQELPSVRRPQTHPRPCPDKVILSALSKA-----------NDEE 128 Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 +L L CGLR SE S++ ++MDD +L ++G DK R+VPL + I ++ Sbjct: 129 QLMLRLGAECGLRRSEIASVSSTDVMDDLVGRSLIVRGLYDKQRLVPLPDDLADLITAHH 188 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-----TAHTLRHSF 269 D L PG +Q ++ Y+G LS T H+LRH + Sbjct: 189 DY---------------------LFPGRWQGHVEA--SYIGKHLSRLLDGWTTHSLRHRY 225 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 AT DL + +LGH + TTQ Y + Sbjct: 226 ATRAYEATHDLLLVSKLLGHASVETTQRYVAM 257 >gi|332300582|ref|YP_004442503.1| integrase family protein [Porphyromonas asaccharolytica DSM 20707] gi|332177645|gb|AEE13335.1| integrase family protein [Porphyromonas asaccharolytica DSM 20707] Length = 414 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 73/304 (24%), Positives = 128/304 (42%), Gaps = 41/304 (13%) Query: 26 EIERGLSKLTLQSYECDTRQFLIFL-AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 ++ + LSK +LQ Y F+ FL + Y E I + + ++ + + Sbjct: 123 QVGKSLSKDSLQKYTVVKTHFVRFLKSTYNREDIGLLEFTPSVVMDFELYLKTK--ANLA 180 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 + ++ L +K+ + +KR I L++ K ++ P VD L Sbjct: 181 HNTAQKKLKLLKTMTIFAQKRGIIMHDPFLDI----KFHTKP-----------VDRGFL- 224 Query: 145 TSHETKWIDARNSAIL--------YLLYGC--GLRISEALSLTPQNI--MDDQSTLRIQG 192 T E I A++ L ++ C GL + +LTP++I MDD+ + + Sbjct: 225 TEDEVSLIVAKDLTRLPRLELVRDIFIFSCFTGLAYIDVRNLTPEDIVVMDDKEWVMSKR 284 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 K I LL + KAI+ Y+ + LF + + N Y++++ Sbjct: 285 KKTNIAFNVLLLDLPKAIISKYNHDTYR-----DGKLFPILSNQKTNS-----YLKEIAD 334 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 G+ + T H RH+FAT LS G + S+ +LGH + TTQIY + +K M + Sbjct: 335 ICGIKKNLTFHLARHTFATLCLSKGVPMESVSKMLGHTNIRTTQIYARITNKKIEHDMEQ 394 Query: 313 IYDQ 316 D+ Sbjct: 395 FADK 398 >gi|325690779|gb|EGD32780.1| phage integrase family integrase/recombinase [Streptococcus sanguinis SK115] Length = 328 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 59/251 (23%), Positives = 113/251 (45%), Gaps = 27/251 (10%) Query: 62 TIRQLSYTEIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117 T+R ++ +++R +++ +R++ K+ +++R S SF +L+ +S + +R Sbjct: 88 TVRDITTSDLRTYLAHYQRERKSSKVTIDNMRRIFS---SFFSWLEDEDFILKSPVRRIR 144 Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 +K ++ +++ L D + R+ A++ LL G+R+ E + L Sbjct: 145 KIKTDKTIKETFSDEGLELLRD----------ACDEIRDLAMIDLLASTGMRVGELVRLN 194 Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD---LNLNIQLPLFRGIR 234 ++I + + GKG+ RIV + ++ Y D D L +++ P R + Sbjct: 195 REDINFYERECLVFGKGNSERIVYFDARTKIHLINYLDSRQDDNPALFVSLSSPHDRLLI 254 Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 G GV R +RQL L H R + AT + G + +Q +LGH ++ T Sbjct: 255 G-----GVETR-LRQLGEKADLN-KVHPHKFRRTLATRAIDKGMPIEQVQHLLGHVKIDT 307 Query: 295 TQIYTNVNSKN 305 T Y VN N Sbjct: 308 TMHYAMVNQAN 318 >gi|89147476|gb|ABD62598.1| integrase [uncultured bacterium] Length = 163 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/58 (46%), Positives = 37/58 (63%) Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 Q+ ++ R GL HT RH FATHLL +G D+R++Q +LGH + TT IYT+V Sbjct: 105 QKAVKVAARISGLVKKVGPHTFRHCFATHLLEDGYDIRTVQELLGHKDVKTTMIYTHV 162 >gi|28378636|ref|NP_785528.1| integrase, fragment [Lactobacillus plantarum WCFS1] gi|28271472|emb|CAD64377.1| integrase, fragment [Lactobacillus plantarum WCFS1] Length = 107 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 3/71 (4%) Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 GKP+ P V + Y +L R L S H+LRH+ AT LL NG + IQ LGH R+ST Sbjct: 22 GKPITPSVIKYYTGKLSR--ELDFSFNFHSLRHTHATMLLENGAKYKEIQQRLGHSRIST 79 Query: 295 T-QIYTNVNSK 304 T IY++V +K Sbjct: 80 TLDIYSHVTNK 90 >gi|331697265|ref|YP_004333504.1| integrase family protein [Pseudonocardia dioxanivorans CB1190] gi|326951954|gb|AEA25651.1| integrase family protein [Pseudonocardia dioxanivorans CB1190] Length = 573 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 8/150 (5%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQST--LRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCP 218 +L G+R SE L LT ++ S LR+ GK R VPL P ++ I ++ P Sbjct: 323 ILARTGMRRSEMLGLTIDAVVQIGSAYWLRVPVGKMHTDRYVPLHPQLKALIDDWLARRP 382 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278 L ++ LF G+P+N + +R GL T H LRH+ AT ++ G Sbjct: 383 EGLRSDL---LFTD-HGRPVNASRIEAAVRNAADRAGLG-RVTPHQLRHTLATQAINRGM 437 Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 L +I ++LGH LS T++Y + ++ D Sbjct: 438 SLEAIAALLGHRSLSMTRVYARIANRTVAD 467 >gi|317058881|ref|ZP_07923366.1| tyrosine recombinase xerD-like protein [Fusobacterium sp. 3_1_5R] gi|313684557|gb|EFS21392.1| tyrosine recombinase xerD-like protein [Fusobacterium sp. 3_1_5R] Length = 266 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 62/265 (23%), Positives = 119/265 (44%), Gaps = 30/265 (11%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 E + +Q ++ +LE++RGLS+ +L++ + D QFL ++ Y + ++T+ T++ + Sbjct: 7 EFILWKQKYIHHLELQRGLSQNSLRAIQKDLEQFLNYMEEYQDGELTVLTLKSYFF---- 62 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 +K +++R +S IK FL++LK+ I E L ++K E+ Sbjct: 63 -----HLQEKHASNTIQRKISSIKVFLRFLKEENIVQEDFSLYFTKVRK---------EE 108 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + + + + R+ AI LLY G++ E LSLT I + + Sbjct: 109 DTILFFEKDVWEQFRRAFENNLRDKAIFELLYSTGMKPKEFLSLTYLQIEWQKQEIYFFQ 168 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 K + R V ++A+ Y C ++ F + +F++Y ++ Sbjct: 169 KKES-RTVFFSHRAKEALWNY---CEEKGRKEGRIWDF----SEKTLRNIFKKYREKIS- 219 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNG 277 GL + T ++ RH+FA LL G Sbjct: 220 --GLE-NMTIYSFRHTFAITLLRAG 241 >gi|295087104|emb|CBK68627.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 470 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 65/283 (22%), Positives = 121/283 (42%), Gaps = 36/283 (12%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS----KRRTQKIGD 85 G S TL Y + L+ L+ I ++ ++IR ++S + ++ K+ Sbjct: 207 GCSDKTLAYYRNTIERLLVTLSM---------AICHITTSDIRTYLSDYQEEHQSSKVTI 257 Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 +++R S SF +L+ +S + + +K + + L+++Q L D+ Sbjct: 258 DNMRRIFS---SFFAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQLRDSC---- 310 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 + R+ AI+ L G+R+ E + L ++I + + GKG+K R+V Sbjct: 311 ------TNKRDLAIIDFLSSTGIRVGELVKLNREDIDFHERQCVVFGKGNKERVVYFNAR 364 Query: 206 VRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 + + +Y + D L +++ P R L + IR+L L +P Sbjct: 365 TKLHLQQYLNGRTDDNPALFVSLHSPHTR------LTISGVEVRIRKLGHTLSMP-KVHP 417 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 H R + AT + G + +Q +LGH R+ TT Y VN N Sbjct: 418 HKFRRTLATMAIDKGMPIEQVQRLLGHVRIDTTLHYAIVNQNN 460 >gi|317128840|ref|YP_004095122.1| integrase family protein [Bacillus cellulosilyticus DSM 2522] gi|315473788|gb|ADU30391.1| integrase family protein [Bacillus cellulosilyticus DSM 2522] Length = 324 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 69/281 (24%), Positives = 118/281 (41%), Gaps = 30/281 (10%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 GLSK TL Y+ + L FL E + + + E R ++ + D LK Sbjct: 45 GLSKQTLFDYDVHFKYLLDFL----ERDLMADEMTTEIFLEYRNYM-------LNDLGLK 93 Query: 90 RS-----LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD-NVLL 143 S L I++FL+Y + E ++ +K + E AL+ + +LL Sbjct: 94 ASTVNIRLRTIRAFLRY------SYEEGWIDQPIHEKFKPVKAPQKEVDALSPREIKLLL 147 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI---RIV 200 ++ + R+ + + + RISE L++ +N+ ++++ G K R V Sbjct: 148 SQINDDYYAGFRDKVLFFTMLDSMARISELLAIKRENVDLRNGVIKLEADGTKTKVDRFV 207 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 P+ K + EY + D I LF G+ L+ ++ + + G+ Sbjct: 208 PISTRTSKLLQEYINETS-DFEQEI---LFLTYDGQVLSANTVRKSLMDYGKAAGINKQV 263 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + H RHS A + NGGD S++SILGH L T Y + Sbjct: 264 SPHIWRHSGAILYIMNGGDPFSLKSILGHTTLHMTNHYVQM 304 >gi|217968814|ref|YP_002354048.1| integrase [Thauera sp. MZ1T] gi|217506141|gb|ACK53152.1| integrase family protein [Thauera sp. MZ1T] Length = 332 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 80/303 (26%), Positives = 122/303 (40%), Gaps = 21/303 (6%) Query: 11 SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70 SF L +R + L +R S T+ SY R L F + + Q+ Sbjct: 6 SFPALLQR-FFTDRLMQQRRASPHTIGSYRDTFRLLLRFAQMRLGRQPSQLAFEQIDAPL 64 Query: 71 IRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 I AF+ + + ++ I RS L+ I+SF +Y T I + + S R Sbjct: 65 IAAFLDELQDKRGITARSRNLRLTAIRSFFRYAAFEAPTHAEQIQRVLAIP-SQRFTRTQ 123 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTL 188 VD +L +T W R+ A+L L GLR+SE ++ I+ + + Sbjct: 124 VGFLTRPEVDALLAAPDRQT-WSGRRDHALLLLAVQAGLRLSELTAMRRDTVILGSGAHV 182 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 + GKG K R PL + + P + + I F RG L+ Q Y+ Sbjct: 183 LVMGKGRKERATPLTRQTAAVLNAWLKEIPANPDATI----FPSARGTRLSADGVQ-YL- 236 Query: 249 QLRRYLGLPLST---------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 L +++ + + T H LRH+ A LL G D I LGH + TTQIY Sbjct: 237 -LAKHVAVAARSCPSLAQKRVTPHVLRHTTAMELLQAGVDRAVIALWLGHESVETTQIYL 295 Query: 300 NVN 302 + N Sbjct: 296 DAN 298 >gi|313906409|ref|ZP_07839747.1| integrase family protein [Eubacterium cellulosolvens 6] gi|313468744|gb|EFR64108.1| integrase family protein [Eubacterium cellulosolvens 6] Length = 354 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 74/263 (28%), Positives = 117/263 (44%), Gaps = 18/263 (6%) Query: 56 EKITIQTIRQL-----SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL---KYLKKRKI 107 EK+T+ I + SYT I ++ +++K SLS I S+L Y+ K Sbjct: 80 EKLTVDDIDEFLIASRSYTTPGGMIKDTSPSRL--KAIKSSLSVIFSWLYAHDYIPKDP- 136 Query: 108 TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT---SHETKWIDARNSAILYLLY 164 T S + ++ K N+L K+ + V+N L T S K R++AI+ L Sbjct: 137 TAGSMTIRVKKEKMINTL-EMREVKKLVNTVENSSLSTELKSKRAKKSAYRDTAIILLFL 195 Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD-LNL 223 G+RISE + L ++I D+S + + KG K V A+++Y L + Sbjct: 196 NTGIRISELVGLNLKDIDFDESCIYVTRKGGKPDQVYFNDETAAALMDYIQLERGTYVTE 255 Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282 + LF K + Q IR+ R L T H R ++ + LL DL++ Sbjct: 256 ECEDALFISAFHKRMAVRSVQEMIRKYSRETLPNKKKVTGHVFRKTYGS-LLYEASDLKN 314 Query: 283 IQSILGHFRLSTTQIYTNVNSKN 305 +Q++LGH + TT Y SKN Sbjct: 315 VQAVLGHESIVTTSTYYVNESKN 337 >gi|312876873|ref|ZP_07736850.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A] gi|311796388|gb|EFR12740.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A] Length = 319 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 65/287 (22%), Positives = 120/287 (41%), Gaps = 32/287 (11%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 +G S LT++ YE R AF+ ++L R + + +Q + + Sbjct: 28 QGRSDLTIRDYEIHIR------AFFKRYPDCFNDTQKL-----RKCLIEYLSQPMKPVTY 76 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--LLHTS 146 + +K+FL + + I + I + PR +++ ++ + LL Sbjct: 77 NLRMKNLKAFLSWCVEEGIIPTNPIAKFK--------PRKTDDRIVEIDIETLQKLLQLP 128 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI-----RIVP 201 + R+ A++ L G+R EA SL + D +++ D R++P Sbjct: 129 DRKTFAGLRDYALMLLTLDTGIRPKEAFSLLKDHF--DFKNMQVVIPSDVAKTRVSRVLP 186 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 + P AI + + + +P+F + GKPLN + +R+ + LG+ + Sbjct: 187 ISPVTANAIKKL--ISSRHPQWDDSVPVFCSVTGKPLNRYRWNERMREYSKQLGVKIK-- 242 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 + LRH FA L NGG S+Q I+GH L T+ Y + ++ D Sbjct: 243 PYDLRHMFALLYLKNGGYELSLQKIMGHTTLEMTKKYVHFTQQDLQD 289 >gi|161525981|ref|YP_001580993.1| integrase family protein [Burkholderia multivorans ATCC 17616] gi|189349304|ref|YP_001944932.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616] gi|160343410|gb|ABX16496.1| integrase family protein [Burkholderia multivorans ATCC 17616] gi|189333326|dbj|BAG42396.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616] Length = 188 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 11/155 (7%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-------QGKGDKIRIVPLLPSVR 207 RN A++ L + G+R+ E +L +++D +L+ Q KG R V L +R Sbjct: 27 RNRAMVLLTHWAGMRVGEVAALLVGDVLDADGSLKSEIRLAPEQTKGRHARTVFLGQKLR 86 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 + + Y N + PLF + +Y L + G+ ++H+ R Sbjct: 87 RELAAYVASLK---NPQPEQPLFYTQKRAGFTANTLCQYFHWLYKGAGIQ-GASSHSGRR 142 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 SF T+L S G +R + S+ GH +STTQ Y +VN Sbjct: 143 SFITNLASKGVGVRVLMSLAGHRDISTTQRYIDVN 177 >gi|38637721|ref|NP_942695.1| putative integrase/recombinase [Ralstonia eutropha H16] gi|32527059|gb|AAP85809.1| putative integrase/recombinase [Ralstonia eutropha H16] Length = 420 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 65/273 (23%), Positives = 122/273 (44%), Gaps = 30/273 (10%) Query: 44 RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103 R +F F IT Q+ ++ AF++ + ++ +S+ R +S ++ FL++L Sbjct: 147 RVIALFADFLGSRNITF--FDQVQPADLCAFVTAQ--HRLSAKSVSRIVSDVRCFLRFLL 202 Query: 104 KRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161 R I + S++L + ++ + ++P ++ + + LT + + TS + K R+ AI Sbjct: 203 MRGILQQDLSHVLPVVHVPRDATIP-SVWDPEVLTKLLEAVDRTSPKGK----RDYAIFL 257 Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYY------ 214 L GLR+ + +L+ ++ + +T+ + Q K +PL V +A+++Y Sbjct: 258 LACRLGLRVGDIRALSLDDLKWETATIEVRQSKTLTPLCLPLTEEVGEALIDYLRSGRPQ 317 Query: 215 -DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA----HTLRHSF 269 D L LN FR +R + G+ T H+LRH+ Sbjct: 318 SDHREVFLTLNAPFLPFR-------EADSLYWIVRHWKAIAGIHFRTPQRHGLHSLRHTL 370 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 AT LL + I ILGH ++T IY + Sbjct: 371 ATRLLHEQTPFQVISDILGHATTASTLIYAKTD 403 >gi|89147636|gb|ABD62677.1| integrase [uncultured bacterium] Length = 163 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 4/70 (5%) Query: 234 RGKPLNPGVFQRYIRQ--LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291 R ++ Q+ +R LR + P T H+LRHSFATHLL G D+R++Q LGH Sbjct: 95 RCHHIDESAMQKAMRAALLRSRISKP--ATCHSLRHSFATHLLERGADIRTVQEQLGHSD 152 Query: 292 LSTTQIYTNV 301 + TQIYT+V Sbjct: 153 VRMTQIYTHV 162 >gi|291521083|emb|CBK79376.1| Site-specific recombinase XerD [Coprococcus catus GD/7] Length = 398 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 63/259 (24%), Positives = 122/259 (47%), Gaps = 21/259 (8%) Query: 57 KITIQTIRQLSYTEIRA-----FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES 111 K + I +++T I A ++SK R + S+ +++ ++ F ++L+ I + Sbjct: 131 KAVVPDIHDIAWTSITANDVINYLSKER-NDLCTASIGVTVTALRRFFRFLQHHDIVIHT 189 Query: 112 NILNMR----NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167 ++LN+ K + LP L + + + L + S + R+ +IL G Sbjct: 190 SVLNLPLSVPAWSKGSILPITLTKDE-----QSRLSNYSFPSTPTGLRDYSILLCFTELG 244 Query: 168 LRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226 LR SE +L +I ++ T+ + + K R +P+ + KA LE Y + ++L Sbjct: 245 LRCSEVANLQIGDIEWNRGTVIVRKTKTHAERELPMSVKLGKA-LEDYVMNARPISLGSP 303 Query: 227 LPLFRGIRG--KPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSI 283 L F+ R +P + + IRQL +G+ H LR + ++L + G DL+++ Sbjct: 304 L-YFKSARRMLEPASTDNIRSVIRQLYSKVGITGWHVGTHALRRTVGSYLYNAGNDLKTV 362 Query: 284 QSILGHFRLSTTQIYTNVN 302 +LGH +STT+ Y ++ Sbjct: 363 ADLLGHTSVSTTKAYVRID 381 >gi|330998384|ref|ZP_08322208.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] gi|329568490|gb|EGG50295.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] Length = 397 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 70/163 (42%), Gaps = 33/163 (20%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR---IVPLLPSVRKAILE-- 212 A L+ Y CGLRIS+ L L +N+ RI K R +PL + RK + E Sbjct: 244 AFLFSCY-CGLRISDVLVLKWKNVDSSAEQWRINIIMQKTRQPLYLPLSMNARKWMPERN 302 Query: 213 -------YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + P + N+QL P V + G+ T H Sbjct: 303 GAGDEDLVFPTLPCEDTCNVQL-----------KPWV---------KAAGITKHVTYHVS 342 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 RH+FAT LL+ G DL ++ +LGH + TTQIY + +K D Sbjct: 343 RHTFATMLLTLGADLYTVCKLLGHSDVKTTQIYAKIINKKKED 385 >gi|226948086|ref|YP_002803177.1| phage integrase [Clostridium botulinum A2 str. Kyoto] gi|226844485|gb|ACO87151.1| phage integrase [Clostridium botulinum A2 str. Kyoto] Length = 138 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 6/120 (5%) Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 S + + GKG+K R + L P+ +KAI ++ + ++N N LF + V Q Sbjct: 4 SFIYVVGKGNKKREIFLTPAAKKAINDWLHIRNSINVNTN---ALFISRNSNRITTRVIQ 60 Query: 245 RYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTNVN 302 +++ GL P S + H LRH+ AT + G D+RS+Q ILGH ++TT+IYT+++ Sbjct: 61 NIVKKYVITSGLDPKSISTHKLRHTAATLMYKYGRVDIRSLQQILGHESVATTEIYTHID 120 >gi|312129988|ref|YP_003997328.1| integrase family protein [Leadbetterella byssophila DSM 17132] gi|311906534|gb|ADQ16975.1| integrase family protein [Leadbetterella byssophila DSM 17132] Length = 275 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 73/148 (49%), Gaps = 18/148 (12%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYD-L 216 +L ++Y GL+++EA++L +I + +T++I + K R++ L P++ I EY Sbjct: 121 LLIMIYNNGLKVNEAINLKVGDIDTENNTIKIDADQPKKSRLLRLSPALNGLIEEYKQKY 180 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPG-----VFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 P D+ F G G VFQ+ +++ + L+T LRHSFA Sbjct: 181 KPSDV-------FFPGSGGIGHYSARNIQLVFQKALKEAKIEKAAKLTT----LRHSFAV 229 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYT 299 H L NG + +Q ILGH + TT Y Sbjct: 230 HSLENGISINHLQKILGHSNIQTTSFYA 257 >gi|270293803|ref|ZP_06200005.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275270|gb|EFA21130.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 386 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 74/282 (26%), Positives = 115/282 (40%), Gaps = 44/282 (15%) Query: 44 RQFLIFLAFYTEEKITIQTIRQLSYTEIRAF---ISKRRTQKIGDRSLKRSLSGIK--SF 98 R L +L Y +EK T + I + F + K ++ G R + G+ S Sbjct: 117 RSCLRYLEIYCDEKTTFKDITPEFIAGFKDFLDNVEKDTHKRTGPRRERDVFQGLSQNSK 176 Query: 99 LKYLKKRKITT----ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + Y K + + I+++ L+ A ++ LTL + L + I Sbjct: 177 VSYFNKLRACINQAYDERIISVNPLRGIEGFKAAEVKRDYLTLEEVKQLAATPCRYPILK 236 Query: 155 RNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212 R L+ C GLR S+ LT + Q GD RI+ + E Sbjct: 237 RA-----FLFSCLTGLRKSDIQKLTWSEV---------QKFGDYTRII--FKQKKTGGQE 280 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR------QLRRY---LGLPLSTTAH 263 Y D+ P Q + G RG P +P VF + +L+R+ G+ + T H Sbjct: 281 YLDISP-------QAEKYLGERGNPEDP-VFTGFTYGSWTSVELQRWSMKAGVNKNLTFH 332 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 RH+FA +L G D+ ++ +LGH L+TTQIY V KN Sbjct: 333 CGRHTFAVLMLDLGADIYTVSKLLGHKELATTQIYAKVLDKN 374 >gi|47565414|ref|ZP_00236456.1| putative integrase-recombinase [Bacillus cereus G9241] gi|208742323|ref|YP_002267775.1| integrase family protein [Bacillus cereus] gi|47557768|gb|EAL16094.1| putative integrase-recombinase [Bacillus cereus G9241] Length = 390 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 67/153 (43%), Gaps = 10/153 (6%) Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 N IL L G RI E + +++ D + L++ GKGDK R + + + + I E Sbjct: 218 NYTILLALASTGARIQELCTARVKDLHYDGKYWLKVTGKGDKARELFIPEHLFQCISEMR 277 Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266 F L+ + PLF RG NP + + + L TAHT R Sbjct: 278 RRRGFQTILDRGDECPLFVNQRGNFYNPKTLSNQVTDMIKKTNLDFLKYRENPVTAHTFR 337 Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298 H+FA + G DL + LGH + TT+IY Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370 >gi|229078262|ref|ZP_04210827.1| Transposition regulatory protein TnpA [Bacillus cereus Rock4-2] gi|228705062|gb|EEL57483.1| Transposition regulatory protein TnpA [Bacillus cereus Rock4-2] Length = 374 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 75/155 (48%), Gaps = 16/155 (10%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-------GKGDKIRIVPLLPSVR 207 R+S ++ LL+ GLRI E LSL ++ + D +I+ G K++ + + Sbjct: 190 RDSFLIQLLFETGLRIGEVLSLFMEDFIFDYKGHKIRLTDRGELENGAKLKTGERMIFIS 249 Query: 208 KAILEYYD------LCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLGLPLST 260 +++++ YD + D++ N RG +G+P+ G + ++LR+ GL + Sbjct: 250 QSLMDLYDDYQYEVIDKLDIDTNFVFVKLRGENKGRPMTYGDVESLFKRLRKKTGLAVH- 308 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 H RH+ AT D++ +Q LGH + TT Sbjct: 309 -PHLFRHTHATLYYQETKDIKQVQERLGHTNIQTT 342 >gi|298245229|ref|ZP_06969035.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297552710|gb|EFH86575.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 368 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 25/176 (14%) Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPS 205 E++ + R+ AIL L G+R E +LT N+ D + +R+ GKG K V L Sbjct: 173 ESEHLQVRDRAILACLLDSGIRAHELCTLTIGNVCLDSKDAHIRVFGKGGKWGEVGLGEQ 232 Query: 206 VRKAILEYYDL-----CPFDLNLNIQ-LP----------------LFRGIRGKPLNPGVF 243 R+AI +Y + +++ +Q LP +F GK L Sbjct: 233 ARRAIQKYVRMFREPTIEYEIREQLQRLPARQAQQIKRQALGKALVFVNRSGKALTISGL 292 Query: 244 QRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 R + +L + G+ + + HT RH+ A + NGG++ + +L H +STT+ Y Sbjct: 293 YRMVDRLGSWAGIEGVRCSPHTFRHTMAAMFIRNGGNIYQLSKLLRHASVSTTEEY 348 >gi|298253182|ref|ZP_06976974.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1] gi|297532577|gb|EFH71463.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1] Length = 298 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 57/215 (26%), Positives = 91/215 (42%), Gaps = 34/215 (15%) Query: 93 SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE---KQALTLVDNVLLHTSHET 149 S I+SF Y+ + +I + + + ++K ++P + + AL V Sbjct: 100 STIRSFYSYMIEEEIIDVNPTVKLPKIRKEYAIPHPCPDYIIRGALARVRG--------- 150 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVR 207 + A+L L CGLR SE ++ +IM + L + GKG K R VP+ P + Sbjct: 151 ---NKEYEAMLRLGAECGLRRSEIAQVSSSDIMMLNTHPQLLVHGKGRKERTVPIAPDLA 207 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 + I N +F G + +I QL LG ST H+LRH Sbjct: 208 QIIA------------NKHGYMFPGRWTGHVEASYIAHHISQL---LGNGYST--HSLRH 250 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + T + DL + +LGH + TTQIY ++ Sbjct: 251 RYDTKAYESTHDLLLVSKLLGHASVETTQIYISLT 285 >gi|260587709|ref|ZP_05853622.1| integrase/recombinase, phage integrase family [Blautia hansenii DSM 20583] gi|331084000|ref|ZP_08333107.1| hypothetical protein HMPREF0992_02031 [Lachnospiraceae bacterium 6_1_63FAA] gi|260541974|gb|EEX22543.1| integrase/recombinase, phage integrase family [Blautia hansenii DSM 20583] gi|330402362|gb|EGG81932.1| hypothetical protein HMPREF0992_02031 [Lachnospiraceae bacterium 6_1_63FAA] Length = 355 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 70/288 (24%), Positives = 130/288 (45%), Gaps = 35/288 (12%) Query: 38 SYECDTRQFLIFLAFYT---EEK----ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK- 89 SY D R F FL +EK I+IQ + L + F + + D L+ Sbjct: 48 SYAYDLRVFFRFLQETNPSLKEKSLSEISIQDLSLLEPVDFEEFQEYLKAYQSADNKLET 107 Query: 90 -------RSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNSLPRALNEKQALTLVD- 139 R +S ++SF YL KR++ T + + ++M +K+ + L+ + L+D Sbjct: 108 NSRTGIARKMSCLRSFYDYLCKRQLLTSNPVRLVDMPKIKEKAII--QLDPDEVANLLDY 165 Query: 140 ---------NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 V L+ ++ K+ R+ AI+ LL G G+R+SE + L +I + +RI Sbjct: 166 IENYGKQLSGVKLYHYNKQKY---RDIAIVTLLLGTGVRVSELVGLNIGDIDFKNNGIRI 222 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN--LNIQLPLFRGIRGKPLNPGVFQRYIR 248 KG IV V +A+ +Y ++ + + LF + K ++ ++ ++ Sbjct: 223 LRKGGNEMIVYFGAEVEQALKDYLEISRNSITPLSGHEDALFLSGQRKRISVDAVEKMVK 282 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + + + + T H LR ++ T L GD+ + +LGH ++TT+ Sbjct: 283 KYASAVSVK-TITPHKLRSTYGTALYRETGDIYLVADVLGHSDVNTTK 329 >gi|319774882|ref|YP_004134151.1| integrase family protein [Thermovibrio ammonificans HB-1] gi|317115230|gb|ADU97719.1| integrase family protein [Thermovibrio ammonificans HB-1] Length = 279 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/149 (33%), Positives = 74/149 (49%), Gaps = 23/149 (15%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTL--RIQGKGDKIRIVPLLPSVRKAILEYYD 215 A L + Y GLR SE LSL+ + + + L R++GKG K R+VPL V + I E Sbjct: 132 AALLMAY-AGLRASEVLSLSKFSFQREGNRLIVRVKGKGGKERVVPLPAGVSREIEE--- 187 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR---RYLGLPLSTTAHTLRHSFATH 272 NLN+ PLF+ + + R R+LR + +G+ H LRH+F T Sbjct: 188 ------NLNL-FPLFK------WSSSPYYRLYRKLRQAGKRVGIA-DFHPHRLRHTFGTE 233 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 L G I++++GH L+TT Y + Sbjct: 234 LARRGVRPEVIRTLMGHSNLNTTAGYIGI 262 >gi|75812296|ref|YP_319915.1| Phage integrase [Anabaena variabilis ATCC 29413] gi|75705052|gb|ABA24726.1| Phage integrase [Anabaena variabilis ATCC 29413] Length = 320 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 104/232 (44%), Gaps = 28/232 (12%) Query: 81 QKIGDRSLKRSLSGIKSFLK---YLKKRKITTESNILNMRNLKKSNSL-PRALNEKQALT 136 QK + + L ++ LK L+ T + ++ +N+K L RAL + Sbjct: 77 QKYAPATTNKMLCALRRVLKEALRLELMDATDYAKAVDFKNVKVKRKLRGRALTSAEIAA 136 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L++ L + R++A++ +L G G+R +E ++L +++ + + QGKGDK Sbjct: 137 LIEVCLCDPTP----CGVRDAALIAILRGAGVRRAEVVNLELRDLSSNGALEIRQGKGDK 192 Query: 197 IRIVPLLPSVRKAILEYY----------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 R V LP+ A++E + LCP +QL + + P Sbjct: 193 DRTV-YLPTAAMALVEDWLRVRGRKTGALLCPIRKGGQVQL--------RRMTPQAVLLI 243 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 +R+ G+ S + H R +F + LL +G D+ ++Q + GH +TT Y Sbjct: 244 VRKRASESGVE-SFSPHDFRRTFCSDLLDSGTDIVTVQKLAGHASPATTSKY 294 >gi|271965863|ref|YP_003340059.1| Site-specific recombinase XerD-like protein [Streptosporangium roseum DSM 43021] gi|270509038|gb|ACZ87316.1| Site-specific recombinase XerD-like protein [Streptosporangium roseum DSM 43021] Length = 375 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 82/169 (48%), Gaps = 11/169 (6%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212 R++ I+ LL G R+SE + ++ D RI GKG K R VPL V + +LE Sbjct: 205 RDALIVLLLSTMGPRVSELVRANVEDFYTNDGVRYWRIFGKGGKTRDVPLPGDVAR-VLE 263 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL--STTAHTLRHSFA 270 Y L + + L RG+ L G Q I +++R + S T H LRH+ A Sbjct: 264 AYLLERGRAEVQDK-ALLLSWRGRRLARGDVQAVIDRVQRRVDPDRRRSVTPHGLRHTTA 322 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 THLL++ D+ +++ +LGH L+T Y + +E+ + HP Sbjct: 323 THLLADAVDMDAVRRVLGHSDLATLGRYRDELPGE-----LEVAMRAHP 366 >gi|258514691|ref|YP_003190913.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] gi|257778396|gb|ACV62290.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] Length = 316 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 68/275 (24%), Positives = 108/275 (39%), Gaps = 29/275 (10%) Query: 39 YECDT--RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK 96 Y C + RQFL F A +Q IR + I+ FI RR Q I ++ +K + ++ Sbjct: 44 YRCKSSMRQFLFFCA----NNYRMQNIRNIQDKHIKDFIEYRRDQGINEKVIKNDIWAVR 99 Query: 97 SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156 F +Y K K N + + RA E + ++D + + Sbjct: 100 LFHRYTPKAKNRISDNEVFGLKSTPDGRVDRAWTEGEFKKMLDFAEKLGRQDVAFT---- 155 Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-----IQGKGDKIRIVPLLPSVRKAIL 211 + L GLRI E L L+ + D ++ LR ++GKG + R + L +A+ Sbjct: 156 ---MRLAQHAGLRIHECLRLSKE---DAEAALRTGILHVKGKGGRERDLKLSSEALQALS 209 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 E D P + K G ++ + R + T H LRH+FA Sbjct: 210 EASVRINNDAGKLFVRPGQKTHSAKKSIEGFISKHRDKFRELEDREKNMTFHGLRHTFAR 269 Query: 272 ----HLLSNGGDLR----SIQSILGHFRLSTTQIY 298 + G D++ + ILGH R T+IY Sbjct: 270 KEYFQRIDRGMDIQRALVEVSRILGHNRPEVTKIY 304 >gi|149916559|ref|ZP_01905074.1| Integrase [Roseobacter sp. AzwK-3b] gi|149809533|gb|EDM69392.1| Integrase [Roseobacter sp. AzwK-3b] Length = 189 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/181 (27%), Positives = 80/181 (44%), Gaps = 12/181 (6%) Query: 133 QALTLVDNVLLHTSH--ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR- 189 QA T D L H T+ R+ I+ + GLR E +L ++ DDQ +R Sbjct: 3 QAQTFSDTQLKRILHWCSTRRHPTRDRTIVLTSFYAGLRAKEIAALKVGDVYDDQGAVRD 62 Query: 190 ------IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 Q KG K R V + +R+ ++EY D + + PLF +G + Sbjct: 63 QFTLTAAQAKGGKSRTVWINRRLRRQLVEYRDAVLG--SRSTAEPLFVSQKGGAFSANTM 120 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + + + G + ++H+ R SF T+L + +R + + GH + TTQ Y +VN Sbjct: 121 TQLFLVIYKSAGFA-NASSHSGRRSFITNLAAKSVSVRVLAELAGHSSIQTTQRYIDVNP 179 Query: 304 K 304 K Sbjct: 180 K 180 >gi|89147630|gb|ABD62674.1| integrase [uncultured bacterium] Length = 163 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/60 (45%), Positives = 38/60 (63%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 V + ++ R GL HTLRH FA HLL +G D+R++Q +LGH ++TT IYT+V Sbjct: 103 VLHKAVKHAIRQAGLEKRGRCHTLRHGFAPHLLEDGYDMRTVQELLGHKDVTTTMIYTHV 162 >gi|157502123|ref|YP_001485222.1| TnpI resolvase [Bacillus thuringiensis] gi|228911345|ref|ZP_04075148.1| TnP I resolvase [Bacillus thuringiensis IBL 200] gi|228943117|ref|ZP_04105604.1| TnP I resolvase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228956360|ref|ZP_04118192.1| TnP I resolvase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228969737|ref|ZP_04130512.1| TnP I resolvase [Bacillus thuringiensis serovar sotto str. T04001] gi|228975589|ref|ZP_04136137.1| TnP I resolvase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982244|ref|ZP_04142527.1| TnP I resolvase [Bacillus thuringiensis Bt407] gi|135957|sp|P10020|TNRI_BACTU RecName: Full=TnP I resolvase gi|40317|emb|CAA31832.1| TnpI resolvase [Bacillus thuringiensis] gi|40348|emb|CAA30491.1| unnamed protein product [Bacillus thuringiensis] gi|87133428|gb|ABD24338.1| TnpI resolvase [Bacillus thuringiensis] gi|117553204|gb|ABK35132.1| putative Tn4430 TnpI resolvase [Bacillus thuringiensis serovar aizawai] gi|145559600|gb|ABP73626.1| TnpI resolvase [Bacillus thuringiensis] gi|228777484|gb|EEM25768.1| TnP I resolvase [Bacillus thuringiensis Bt407] gi|228784127|gb|EEM32158.1| TnP I resolvase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228789977|gb|EEM37784.1| TnP I resolvase [Bacillus thuringiensis serovar sotto str. T04001] gi|228803317|gb|EEM50104.1| TnP I resolvase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228816555|gb|EEM62693.1| TnP I resolvase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228848282|gb|EEM93133.1| TnP I resolvase [Bacillus thuringiensis IBL 200] gi|326943288|gb|AEA19183.1| TnpI resolvase [Bacillus thuringiensis serovar chinensis CT-43] gi|326943302|gb|AEA19197.1| TnpI resolvase [Bacillus thuringiensis serovar chinensis CT-43] gi|326944009|gb|AEA19895.1| TnpI resolvase [Bacillus thuringiensis serovar chinensis CT-43] Length = 284 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 72/273 (26%), Positives = 118/273 (43%), Gaps = 24/273 (8%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKRSLS 93 T+Q Y RQ++ + + K+T +L I +IS + K + +S+ +S Sbjct: 20 TVQGYTSGIRQYIKWFEGSYDRKLT-----KLYRQNILEYISYLKNVKMLNAKSINHKIS 74 Query: 94 GIKSFLKYLKKRKITTESNIL--NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 + F ++L ++ + IL +M ++ + P + E + +VL Sbjct: 75 SLAKFNEFLIQKGSQQDQVILKTDMIKVQTVYASPTQIVELDVKKFLQSVLEDN------ 128 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQ--NIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 + RN AI LL G+RISEALS+ N+ + +R GKG K RIV L V A Sbjct: 129 -NKRNYAIATLLAYTGVRISEALSIKMNDFNLQTGECIIR-SGKGGKQRIVLLNSKVLSA 186 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 I +Y + LF + + L+ V R + + T H LRH F Sbjct: 187 IKDYLIDRKTYSTAHESPYLFISKKREKLDRTVVNRIFKSYSNVI------TPHQLRHFF 240 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 T+ + G + + + GH + TT +YTN N Sbjct: 241 CTNAIEKGFSIHEVANQAGHSNIHTTLLYTNPN 273 >gi|296165373|ref|ZP_06847914.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295899264|gb|EFG78729.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 373 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 78/178 (43%), Gaps = 41/178 (23%) Query: 155 RNSAILYLLYGCGLRISE--------------ALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 R++ + ++YG GLRI+E A L P + + +G K R V Sbjct: 188 RDTTMFKVMYGWGLRINELCRLDLADMYRNPHAPELGPCGFLHVRYGKASRGSPPKRRTV 247 Query: 201 P-LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-------------PGVFQRY 246 P L+P +A+L+Y + NI+ PL+ + + L G F Sbjct: 248 PTLMPWAAEALLDYVN--------NIR-PLYEPGQKQALWLTERRSQVKVRTLTGTFD-- 296 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 +R +GL T H RHSF +H+ +G D R +Q I GH STT IYT+V + Sbjct: 297 --DIRDEVGLDRKLTPHCFRHSFISHMTEDGVDPRFLQEISGHRFASTTGIYTHVTGE 352 >gi|295401863|ref|ZP_06811827.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93] gi|294976117|gb|EFG51731.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93] Length = 191 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 90/183 (49%), Gaps = 10/183 (5%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-I 83 L+IE+ S T+ + + R F FL + ++Q + ++ T +R FI + T++ + Sbjct: 14 LQIEKNYSLNTVDGHAYNLRCFENFLV---QHGYSVQ-LHDITKTHVRHFIQHQITKENV 69 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 R++ R +S +KSF KY K + ++ + K + LP + +L+ + + Sbjct: 70 KPRTIYRRISCLKSFSKYCVKENLIDNDFMIGIDTPKTDSKLPTYM----SLSELRKLFH 125 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 + + RN + LL G+R SE + LT + I +T+RI GKG K R++P Sbjct: 126 FLEQDNSRMAMRNHLLFKLLATTGMRRSEIVELTWEQIDLSNNTIRIYGKGKKERLLPFC 185 Query: 204 -PS 205 PS Sbjct: 186 TPS 188 >gi|139439113|ref|ZP_01772565.1| Hypothetical protein COLAER_01575 [Collinsella aerofaciens ATCC 25986] gi|133775460|gb|EBA39280.1| Hypothetical protein COLAER_01575 [Collinsella aerofaciens ATCC 25986] Length = 399 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/161 (31%), Positives = 70/161 (43%), Gaps = 21/161 (13%) Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG--------------KGDKIRIVPLLPS 205 +YL GLR E L ++ L + G KG ++R V L P+ Sbjct: 216 VYLALNTGLRCGEICGLQRRDWRRALHDLHVVGQAVEHPELHRQAYTKGRRVRNVALAPA 275 Query: 206 VRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 V + + D D L + P + G G P + L R LGLP T Sbjct: 276 VEAQLQRHLDWQ--DTWLARKGPTALVVTFGPAGAIARPSTVTSRFKSLVRDLGLPEETV 333 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301 H+LRH+ A+ LL NG D+R+IQ LGH + TT IY +V Sbjct: 334 FHSLRHTHASWLLMNGFDMRTIQERLGHASVKTTLDIYGSV 374 >gi|99034637|ref|ZP_01314587.1| hypothetical protein Wendoof_01000596 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 144 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 70/137 (51%), Gaps = 1/137 (0%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + W + L R S TL+SY D + + FL + ++ + T+ +LS E+R++++ R Sbjct: 8 EKWYEWLRCNRSYSPNTLESYMRDLKDLISFLNTHIGGEVNVGTLEKLSVPELRSWLTSR 67 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + + RS R+LS I++F KY+K + ++ + +LP+AL+ TL+ Sbjct: 68 YARGVNARSNTRALSVIRNFFKYIKNNHNIDNEAVFSLSRPIQRRTLPKALSIPDIKTLL 127 Query: 139 DNVLLHTSHETKWIDAR 155 + L E+ W+ R Sbjct: 128 KEMKLSDLGES-WVVKR 143 >gi|168212716|ref|ZP_02638341.1| transposase A from transposon [Clostridium perfringens CPE str. F4969] gi|170715669|gb|EDT27851.1| transposase A from transposon [Clostridium perfringens CPE str. F4969] Length = 375 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 75/159 (47%), Gaps = 16/159 (10%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMD-DQSTLRI-----QGKGDKIR-----IVPLL 203 R+ IL LLY GLRI+E L ++I + +I G +++ I+ L Sbjct: 193 RDRLILALLYEGGLRINEVLGAHFEDISQLEDGIFKIVPRENNENGARVKNYAAGIIKLP 252 Query: 204 PSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 P V IL+Y D+ +D N + L L+ +G P+ Q+ +L + +G + Sbjct: 253 PYVIDMILDYINSDILEYDSNF-VFLNLYGKNKGTPIKAITIQKLFDRLSKKVGYHVH-- 309 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 H LRH FAT L G +L I L H + +TQIY + Sbjct: 310 PHMLRHGFATEKLEIGWNLEDISRYLRHKNIQSTQIYAH 348 >gi|123441204|ref|YP_001005191.1| integrase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088165|emb|CAL10953.1| integrase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 332 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 62/238 (26%), Positives = 105/238 (44%), Gaps = 36/238 (15%) Query: 68 YTEIRAFISKRRTQKIGD----RSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKS 122 Y R F+ + R+Q++ ++ R LS + F ++ + +E+ I + L+ Sbjct: 99 YMITRKFLMEYRSQRLSSGLSPATVNRDLSVLSGMFSTLIEAEEFHSENPICAVSKLRLK 158 Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 NS L+E + + L+ D R A+L L G R EA +L ++I+ Sbjct: 159 NSEMSFLSEDEIVDLLSKAT---------GDQRRIALLCL--STGARWGEAKNLRGEHIV 207 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242 ++ T ++ K KIR +P+ + I F+ + N FR + K L P Sbjct: 208 GNKVTF-VETKNGKIRSIPISDEMLTIIKTKKSGQLFNADYN----EFRSLL-KELKPD- 260 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 LP +H LRH+FATH + NGG++ ++Q ILGH + T Y + Sbjct: 261 -------------LPKGQASHALRHTFATHFMMNGGNIITLQRILGHSNIQQTMNYAH 305 >gi|332638801|ref|ZP_08417664.1| integrase [Weissella cibaria KACC 11862] Length = 363 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 69/159 (43%), Gaps = 15/159 (9%) Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207 + K I R ++YL+ GLR EAL+LT +I D T+ + K ++ P + Sbjct: 184 DEKLITWRTGFMVYLISLSGLRAGEALALTKNDIDSDARTINV-SKTKQLSGAVTTPKTK 242 Query: 208 KA----------ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 + Y + N LF G R P V R++ +L + LG Sbjct: 243 TSNRTIVMPNRFFDSYQKFIDAKEHWNSANELFDGRR----TPSVVNRWLERLEKKLGFE 298 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + H LRHS ++LLS+G D+ LGH +S TQ Sbjct: 299 NIISLHGLRHSHVSYLLSSGVDISYASKRLGHSNISITQ 337 >gi|257452338|ref|ZP_05617637.1| integrase/recombinase [Fusobacterium sp. 3_1_5R] Length = 262 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 62/265 (23%), Positives = 119/265 (44%), Gaps = 30/265 (11%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 E + +Q ++ +LE++RGLS+ +L++ + D QFL ++ Y + ++T+ T++ + Sbjct: 3 EFILWKQKYIHHLELQRGLSQNSLRAIQKDLEQFLNYMEEYQDGELTVLTLKSYFF---- 58 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 +K +++R +S IK FL++LK+ I E L ++K E+ Sbjct: 59 -----HLQEKHASNTIQRKISSIKVFLRFLKEENIVQEDFSLYFTKVRK---------EE 104 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + + + + R+ AI LLY G++ E LSLT I + + Sbjct: 105 DTILFFEKDVWEQFRRAFENNLRDKAIFELLYSTGMKPKEFLSLTYLQIEWQKQEIYFFQ 164 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 K + R V ++A+ Y C ++ F + +F++Y ++ Sbjct: 165 KKES-RTVFFSHRAKEALWNY---CEEKGRKEGRIWDF----SEKTLRNIFKKYREKIS- 215 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNG 277 GL + T ++ RH+FA LL G Sbjct: 216 --GLE-NMTIYSFRHTFAITLLRAG 237 >gi|228924542|ref|ZP_04087741.1| Integrase-recombinase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835124|gb|EEM80566.1| Integrase-recombinase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 390 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 67/153 (43%), Gaps = 10/153 (6%) Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 N IL L G RI E + +++ D + L+I GKGDK+R + + + + I E Sbjct: 218 NYTILLALASTGARIQELCTARVKDLHYDGKYWLKITGKGDKVRELFISEHLYQCICEMR 277 Query: 215 --DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266 C L+ + P+F RG N + + + L TAHT R Sbjct: 278 LRRGCQTVLDKGDESPVFINQRGNTYNSKTLSNQVTDMIKKTNLEFLLYRENPVTAHTFR 337 Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298 H+FA + G DL + LGH + TT+IY Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370 >gi|120406876|ref|YP_956705.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] gi|119959694|gb|ABM16699.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] Length = 329 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 76/294 (25%), Positives = 127/294 (43%), Gaps = 36/294 (12%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA--------FISKRR 79 +R +S T+ SY R L L + +E+ T +T +L +T++ A + R Sbjct: 19 QRQVSPRTIASY----RDSLRLLIGFAQER-TGKTPSRLEWTDLDADLIASFLDHLEHVR 73 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 R+L+ L+ I+S + R + + +++ ++P +KQ +T + Sbjct: 74 HNSARTRNLR--LTAIRSLFGFAALR------HPEHAEVIQQVLAIPAKRFDKQLITFLT 125 Query: 140 ----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKG 194 L+ +W R+ A+L L GLR++E L +I D S++R GKG Sbjct: 126 ATEIEALIDAPDTDRWEGRRDRALLLLASQTGLRVAEMTGLNCSDITFGDGSSIRCMGKG 185 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR-----Q 249 K R VPL + +A+L + D+ PLF G+ L+ +R +R Sbjct: 186 RKRRAVPLT-TTTQAVLRVWLTERGDVP---DQPLFPTRTGRRLSTDTVERLVRLHAATA 241 Query: 250 LRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 R + P H LRH+ A LL G D I LGH + +T IY + + Sbjct: 242 ARTCPTIRPAELHPHVLRHTCAMSLLHAGIDTAVIALWLGHADIRSTGIYLHTD 295 >gi|119869601|ref|YP_939553.1| phage integrase family protein [Mycobacterium sp. KMS] gi|119695690|gb|ABL92763.1| phage integrase family protein [Mycobacterium sp. KMS] Length = 300 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 64/287 (22%), Positives = 114/287 (39%), Gaps = 19/287 (6%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +W L E G + T+++Y FL + A T ++ ++ FI Sbjct: 14 SWQLALRSE-GKAPGTIKTYTDGVAAFLRWCA-------ATDTPPAITKPAVQGFIGDLL 65 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + G++ F +++ ++ ++ + + AL++ Q L+D Sbjct: 66 DGGAESATAVARFKGVRQFARWMADEGEIDGDPLVGLKRPAQVRKVVPALSDDQLRALLD 125 Query: 140 NVLLHT-SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI--QGKGDK 196 T H R+ AI+ L+ G+R +E L LT ++ D L I +GKG K Sbjct: 126 ACRGKTLKHR------RDEAIVRLMAETGMRAAELLGLTVADV-DLTRGLAIVRRGKGSK 178 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 R+VP P A+ Y + L PL+ G GK +++ G+ Sbjct: 179 GRVVPFGPQTGAALDRYVRSARRENRLTDHGPLWVGAGGKTFGYHGLDGTLKERAAAAGI 238 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + AH LRH+ AT L GG + + ++ G + YT ++ Sbjct: 239 -ANFHAHRLRHTAATRWLRAGGSEQGLMAVAGWSTRAMIDRYTGASA 284 >gi|325661848|ref|ZP_08150469.1| hypothetical protein HMPREF0490_01205 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471826|gb|EGC75043.1| hypothetical protein HMPREF0490_01205 [Lachnospiraceae bacterium 4_1_37FAA] Length = 322 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 72/285 (25%), Positives = 119/285 (41%), Gaps = 40/285 (14%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT-IRQLSYTEIRAFISKRRTQKIGDRS- 87 G S+ T+Q Y + L IQT +R++S EIR ++ QKI D S Sbjct: 59 GCSERTIQYYSVTVDKMLQ----------KIQTPVRKISTEEIRKYLVD--YQKINDCSK 106 Query: 88 --LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 + I SF +L++ +S + + +K + ++++ L D+ Sbjct: 107 VTVDNVRRNISSFFSWLEEEDYILKSPMRRIHKIKTKQPVKEIISDEAIEMLRDHCQC-- 164 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 R+ A++ LLY G+R+ E ++L ++ + + GKGDK R V Sbjct: 165 --------PRDLAMIDLLYSTGIRVGELVNLNISDVDFEARECVVFGKGDKERRVYFDAK 216 Query: 206 VRKAILEYY----DLCPFDLNLNIQLPLFR-GIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 + +L Y D P L + + +P R I G + IR L R L + Sbjct: 217 AKLHLLNYLSERKDNNPA-LFVTLDVPYDRLKISGVEIR-------IRTLGRKLNME-KI 267 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 H R + AT + G + +Q +LGH ++ TT Y VN N Sbjct: 268 HPHKFRRTMATRAIDKGMPIEQVQKLLGHSQIDTTMQYAIVNQTN 312 >gi|89147606|gb|ABD62662.1| integrase [uncultured bacterium] Length = 163 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 38/59 (64%) Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 Q + + R G+ + H+ RHSFATHLL G D+R++Q +LGH +STT IYT+V Sbjct: 104 LQNAVSRAVRVAGVLKPASCHSFRHSFATHLLEAGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|89147460|gb|ABD62590.1| integrase [uncultured bacterium] Length = 163 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 39/59 (66%) Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 Q+ ++ R G+ HT+RHS+ATHLL NG ++R +Q ++GH + TT+IYT+V Sbjct: 104 LQKAVKTAVRQAGITKRVGCHTMRHSYATHLLENGINIRMVQELMGHKDVKTTEIYTHV 162 >gi|251779032|ref|ZP_04821952.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083347|gb|EES49237.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 335 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 73/151 (48%), Gaps = 3/151 (1%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R A+ LL RISE ++ +I + ++++ GKG K RIV + K LE Y Sbjct: 178 REKALFELLDSTACRISEIQNIKLPDINWHEKSIKVLGKGSKERIV-YFSTRAKLALENY 236 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 D N + L + + + K + Q I+++ G+ AH R + AT LL Sbjct: 237 IKDRSDNNNS--LFISKKFKNKTIGVRSLQNIIKKIYERSGVTERVYAHKFRRTQATRLL 294 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + G + +Q ILGH +TTQIY ++ +N Sbjct: 295 NQGMRIEGVQGILGHTTPTTTQIYAQLSQEN 325 >gi|288962457|ref|YP_003452752.1| integrase [Azospirillum sp. B510] gi|288914723|dbj|BAI76208.1| integrase [Azospirillum sp. B510] Length = 190 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/181 (29%), Positives = 80/181 (44%), Gaps = 13/181 (7%) Query: 132 KQALTLVDNV---LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 KQA L + LL +T++ ARN L Y GLR+ E +LT +++D Q + Sbjct: 2 KQARVLTEQEQRRLLAVIADTRYA-ARNRIAFMLSYMGGLRVGEIAALTVGDVLDGQGGV 60 Query: 189 RIQ-------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241 R Q KG R + +RK + E Y + PL +GKP Sbjct: 61 REQIRLSAEITKGGHARTAFVNDRLRKEV-ERYTAGLNAKQREPERPLLVTQKGKPFTAN 119 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 V + + L + G ++H+ R F T L +G + I ++ GH LSTTQ Y +V Sbjct: 120 VLCQLMGGLYKQAGFD-GASSHSGRRWFITKLAHSGVSAKVIMTLAGHKHLSTTQRYIDV 178 Query: 302 N 302 N Sbjct: 179 N 179 >gi|288557179|ref|YP_003429246.1| site-specific tyrosine recombinase XerS [Bacillus pseudofirmus OF4] gi|288548473|gb|ADC52354.1| site-specific tyrosine recombinase XerS [Bacillus pseudofirmus OF4] Length = 368 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 82/324 (25%), Positives = 144/324 (44%), Gaps = 62/324 (19%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTE--------EKITIQTIRQLSYTEIRAF--------- 74 S LTL +Y D ++FL +L +E +++++ T+ LS E +AF Sbjct: 36 SSLTLFNYARDYQEFLKWLI--SEGISDANDIKEVSVDTLANLSLQEAQAFFKTMLRRKY 93 Query: 75 -ISKRRTQ--KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM-----RNL------- 119 +SK+ + ++ ++++ R S ++S KYL T E+ N RN+ Sbjct: 94 LVSKKSEEYKQVQEKTVNRMKSALRSLFKYL-----TVEAEAENHEPYFHRNVMQKIPVH 148 Query: 120 KKSNSLP-RALN--EKQALTLVDNVLLH----------TSHETKWID---ARNSAILYLL 163 K S S RA N EK + D LH T + ++ R+ AIL L Sbjct: 149 KVSESRSERAANMTEKIFIENADADFLHYVQKEYELTLTKGQMRYFKRDKERDFAILSLF 208 Query: 164 YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL----CPF 219 G G+R++E +L ++ Q +R+ KG+K V ++P + Y ++ Sbjct: 209 LGSGIRLNELSNLKLGDVDFTQKVIRVIRKGNKKDSVTVIPEALDDLKTYLEIRNERYNA 268 Query: 220 DLNLNIQLPLFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278 D + + + + +G G PL+ Q+ I + +S H LRH++AT+L G Sbjct: 269 DGDPHAYVFITKGKNGYSPLSNRAIQKIIAKYTESYDKRMS--PHKLRHTYATNLAEQTG 326 Query: 279 DLRSIQSILGHFRLSTTQIYTNVN 302 D+ + + LGH T+ +Y N + Sbjct: 327 DIPLVMTQLGHSSPETSLLYINTS 350 >gi|329766993|ref|ZP_08258521.1| hypothetical protein HMPREF0428_00218 [Gemella haemolysans M341] gi|328837718|gb|EGF87343.1| hypothetical protein HMPREF0428_00218 [Gemella haemolysans M341] Length = 348 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 5/152 (3%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213 AR+ AIL L G+R++E +L ++I S + + KG+K+ V + S + EY Sbjct: 190 ARDLAILTLFLKSGIRVNELANLKVKDIDFLNSEINVIRKGNKVDTVIITKSALDRLNEY 249 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 PF LN + + + G L+ Q+ + + +P+S H LRHS+ T L Sbjct: 250 ITSLPFKLNREDYVFISKNKAG--LSIRAIQKLVMKYTDAFNVPMS--PHKLRHSYGTKL 305 Query: 274 -LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 L G++ I + +GH T+ +Y N + K Sbjct: 306 ALKTNGNIPIIMTQMGHSNSDTSMLYINESKK 337 >gi|124001375|emb|CAL64013.1| transposase A [Staphylococcus warneri] Length = 361 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 108/245 (44%), Gaps = 36/245 (14%) Query: 67 SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126 + T ++++ K D S + K FL ++ K + + + NIL +R KK L Sbjct: 112 AVTSFLEYLNRTENFKAIDMSKEARGRNFKGFLHHISKGR-SYKKNILKLRVKKK---LV 167 Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDD 184 + L Q +++ HT R+ ++ L+Y GLRI EALSL ++I D+ Sbjct: 168 QVLEHGQVKAIIEAC--HTK--------RDKLLIMLMYEGGLRIGEALSLRIEDISTWDN 217 Query: 185 QSTLRIQGKGDKIRIVPLLP----SVRKAILEYY----------DLCPFDLNLNIQLPLF 230 Q +R + + + L V K ++ Y DL + +N++ F Sbjct: 218 QINIRPRDHNENGAYIKLKKERTIDVSKELMALYTDYLVHEYGEDLDHDYIFINLKDSYF 277 Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290 G PL IR+L + G+ TAH LRH+ AT L+ +G D +Q LGH Sbjct: 278 ----GHPLKYQSVLDLIRRLGKRTGITF--TAHILRHTHATELIRSGWDAAYVQKRLGHA 331 Query: 291 RLSTT 295 + TT Sbjct: 332 HVQTT 336 >gi|227544652|ref|ZP_03974701.1| phage integrase/recombinase [Lactobacillus reuteri CF48-3A] gi|300909431|ref|ZP_07126892.1| phage integrase family integrase/recombinase [Lactobacillus reuteri SD2112] gi|227185377|gb|EEI65448.1| phage integrase/recombinase [Lactobacillus reuteri CF48-3A] gi|300893296|gb|EFK86655.1| phage integrase family integrase/recombinase [Lactobacillus reuteri SD2112] Length = 322 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 67/286 (23%), Positives = 128/286 (44%), Gaps = 23/286 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 ++L ++E G S+ T+ Y+ + +L + + KIT + +R + + R Sbjct: 50 DYLAAKQVE-GCSEKTINYYQATLKMMFSYLGKHVQ-KITTEDLRDY----LGNYQQSRN 103 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + ++ +++R S SF +L+ + +S + + +K S + +++ L D Sbjct: 104 SSRVTIDNIRRIFS---SFFSWLEDEDVIIKSPVRRIHKVKSSAKVKDTYSDEDLERLRD 160 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 H + E R+ A++ +L G+RI E + L +I D+ + GKG+K RI Sbjct: 161 ----HCNSE------RDVAMIDILASTGMRIGELVHLNQNDINFDERECVVLGKGNKQRI 210 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 V + K L+ Y D N + + L + +N G+ R ++ L + G+ Sbjct: 211 V-YFDARSKIHLQNYLAKRKDANSALFVSLHVPHQRMSIN-GIENR-LKNLGKRAGIA-K 266 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 H R + AT+ + G + +Q +LGH R+ TT Y V N Sbjct: 267 VYPHKFRRTLATNAIDKGMPIEQVQKLLGHERIDTTLHYAMVKQSN 312 >gi|229829078|ref|ZP_04455147.1| hypothetical protein GCWU000342_01163 [Shuttleworthia satelles DSM 14600] gi|229792241|gb|EEP28355.1| hypothetical protein GCWU000342_01163 [Shuttleworthia satelles DSM 14600] Length = 360 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/230 (23%), Positives = 107/230 (46%), Gaps = 20/230 (8%) Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEK-----QALT 136 G +++ R +S ++ KY K +E + ++ M LKK ++ R N + A+T Sbjct: 107 GKKAIARKMSALRGMYKYQLIHKHISEDPAALVAMPRLKKDKNIVRMNNYEVQDILNAIT 166 Query: 137 LVDNVLLHTSHETKWI---DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 + + + + + K+ R+ AIL +L G+R+SE L ++ +++L I K Sbjct: 167 IGNQQM--SDRQRKYCLKTQQRDLAILTILLNTGMRVSECRGLDLNDVNLIENSLVIVRK 224 Query: 194 GDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 G I+ V + +Y + + P + + Q LF ++GK ++ ++ ++ Sbjct: 225 GGGQDIIYFGKPVHSTLSDYIEGERQTISPLEGH---QQALFYSLQGKRISVDAIEKLVK 281 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + R T H LR ++ T L GD+R + +LGH ++TT Y Sbjct: 282 KYARIAVPGKHITPHKLRSTYGTALYRETGDIRLVADVLGHENINTTIDY 331 >gi|150402804|ref|YP_001330098.1| phage integrase family protein [Methanococcus maripaludis C7] gi|150033834|gb|ABR65947.1| phage integrase family protein [Methanococcus maripaludis C7] Length = 291 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 74/147 (50%), Gaps = 12/147 (8%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFD 220 L GLR E L+L ++ D + ++G KGDK R VP+ + Y L ++ Sbjct: 138 FLVQTGLRRGEFLNLKFIDVDLDDRIIHVKGGKGDKYRFVPISDEL------YMYLKRWN 191 Query: 221 LNLNIQLPL----FRGIRGKPLNPGVFQRYIRQLRRYL-GLPLSTTAHTLRHSFATHLLS 275 ++ P+ F +GK + ++ + + R + L + T H LRH+FAT+ ++ Sbjct: 192 YERALRYPVDDSYFVSKKGKRQSNKIYASFSEYIDRAVPNLHIRVTPHILRHTFATNCIN 251 Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVN 302 DL+++ ILGH ++TT IY + N Sbjct: 252 KKMDLKTLSLILGHEDIATTSIYLHKN 278 >gi|149913568|ref|ZP_01902101.1| Integrase [Roseobacter sp. AzwK-3b] gi|149812688|gb|EDM72517.1| Integrase [Roseobacter sp. AzwK-3b] Length = 196 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 13/158 (8%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-------IQGKGDKIRIVPLLPSVR 207 R+ I+ + GLR E +L ++ D ++R Q KG + R V + +R Sbjct: 35 RDETIVLFSFYAGLRAKEIAALKRGDVFDKAGSVREQFILSAAQSKGGRTRTVYVNQRLR 94 Query: 208 KAILEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 +A+ EY LNL + PLF +G + + + R +GL ++H+ R Sbjct: 95 RALAEY----AAGLNLSDPNRPLFESQKGGHFSANTMCQLFLDIYRAVGLK-DASSHSGR 149 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 ++ T L + G +R + + GH +STTQ Y +VN++ Sbjct: 150 RTYITRLANKGVGVRLLAELAGHSHISTTQRYIDVNAE 187 >gi|258438229|ref|ZP_05689513.1| transposase A [Staphylococcus aureus A9299] gi|257848273|gb|EEV72264.1| transposase A [Staphylococcus aureus A9299] Length = 361 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 108/245 (44%), Gaps = 36/245 (14%) Query: 67 SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126 + T ++++ K D S + K FL ++ K + + + NIL +R KK L Sbjct: 112 AVTSFLEYLNRTENFKAIDMSKEARGRNFKGFLHHISKGR-SYKKNILKLRVKKK---LV 167 Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDD 184 + L Q +++ HT R+ ++ L+Y GLRI EALSL ++I D+ Sbjct: 168 QVLEHGQVKAIIEAC--HTK--------RDKLLIMLMYEGGLRIGEALSLRIEDISTWDN 217 Query: 185 QSTLRIQGKGDKIRIVPLLP----SVRKAILEYY----------DLCPFDLNLNIQLPLF 230 Q +R + + + L V K ++ Y DL + +N++ F Sbjct: 218 QINIRPRDHNENGAYIKLKKERTIDVSKELMALYTDYLVHEYGEDLDHDYIFINLKDSYF 277 Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290 G PL IR+L + G+ TAH LRH+ AT L+ +G D +Q LGH Sbjct: 278 ----GHPLKYQSVLDLIRRLGKRTGITF--TAHILRHTHATELIRSGWDAAYVQKRLGHA 331 Query: 291 RLSTT 295 + TT Sbjct: 332 HVQTT 336 >gi|163759225|ref|ZP_02166311.1| hypothetical protein HPDFL43_05655 [Hoeflea phototrophica DFL-43] gi|162283629|gb|EDQ33914.1| hypothetical protein HPDFL43_05655 [Hoeflea phototrophica DFL-43] Length = 366 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 68/147 (46%), Gaps = 5/147 (3%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221 +L GC R++E L L + I + I GKGDK R VPL ++R + Sbjct: 193 MLSGC--RMAECLGLEWRLIDWHGGYIVITGKGDKTRHVPLSDALRALLWPLPRAHARVF 250 Query: 222 NLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279 I+ RG P+ + ++ + G+ + H LRH+FAT L GD Sbjct: 251 THRIRRGSIHHKRGDIAPVEEEALNSHFARVCKKAGV-IGFRFHDLRHTFATRFLRATGD 309 Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKNG 306 +R++Q ILGH + TT Y +V + + Sbjct: 310 MRALQLILGHSSIETTMRYAHVTAADA 336 >gi|227889876|ref|ZP_04007681.1| phage integrase/recombinase [Lactobacillus johnsonii ATCC 33200] gi|227849567|gb|EEJ59653.1| phage integrase/recombinase [Lactobacillus johnsonii ATCC 33200] Length = 322 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 73/281 (25%), Positives = 117/281 (41%), Gaps = 32/281 (11%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF-ISKRRTQKIGDRSL 88 G S T++ Y Q L ++ +R+++ E+R + + ++ G ++ Sbjct: 59 GCSDRTIKYYRVTVEQLL---------NKVVRPVRRVTTEEMREYLVDYQKINNCGKTTV 109 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 I SF +L++ E IL S R +++ +A LV NV+ E Sbjct: 110 DNIRRNISSFFSWLEE-----EDYILK--------SPMRRIHKIRAEKLVKNVITDEDIE 156 Query: 149 TKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 K D R+ A++ LLY G+R+ E + L +I + + GKGDK R V Sbjct: 157 -KLRDGCSCLRDVAMIDLLYSTGIRVGELVRLNKTDINFSERECVVFGKGDKERRVYFDA 215 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 + ++ Y D N + + L R L + +RQL R L L H Sbjct: 216 KSKVHLINYLK-SRTDDNPALFVSLDRP--NDRLKISGVEIRLRQLGRKLHLD-RIHPHK 271 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 R S AT + G + +Q ILGH ++ TT Y VN N Sbjct: 272 FRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVNQNN 312 >gi|89147561|gb|ABD62640.1| integrase [uncultured bacterium] gi|89147622|gb|ABD62670.1| integrase [uncultured bacterium] Length = 163 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/60 (48%), Positives = 38/60 (63%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 V Q +R+ L T H LRHSFATHLL +G D+R++Q +L H +STT IYT+V Sbjct: 103 VIQNAVRRAAELSQLTKRVTVHALRHSFATHLLESGYDIRTVQELLSHRHVSTTMIYTHV 162 >gi|89147650|gb|ABD62684.1| integrase [uncultured bacterium] Length = 163 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%) Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 QR ++ R G+ HTLRH+FATHLL G ++R +Q ++GH + TT IYT+V Sbjct: 104 LQRTVKMATRLAGIAKPVGCHTLRHAFATHLLEAGHNIRVVQELMGHKDVETTMIYTHV 162 >gi|20385054|gb|AAM21168.1|AF254788_3 putative integrase/recombinase Xer [Geobacillus stearothermophilus] Length = 304 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 68/288 (23%), Positives = 129/288 (44%), Gaps = 29/288 (10%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87 E+G S T+ SY D F L + +T IR+ I+ ++ + + + Sbjct: 11 EKGASPNTIISYTNDLNIFFQDLHIRPSDYVTPADIRKW----IQQMLNPAEGKPLAIST 66 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA---LNEKQALTLVDNVLLH 144 + R L+ ++SF + K ++ + ++++LK ++ L E++ L+ + Sbjct: 67 INRRLNSLRSFYAWAVKHHKIEQNPMKDIQDLKSADEDTEKIMWLTEEEFEDLLQR-MRK 125 Query: 145 TSHETKWIDA-----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 +++ +D R+ A++YLL GLR+ E +L ++ + +RI GKG K+R Sbjct: 126 KPVQSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEMKRIRIVGKGMKVRT 185 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-------LFRGIRGKPLNPGVFQRYIRQLRR 252 VP + ++ A LE D F + + P +F R P R I+++ Sbjct: 186 VP-ISNILLAELE--DWLKFRAEMAKKKPHVAESPYVFYSQRS----PKFSVRGIQRMIE 238 Query: 253 YLGLP-LSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRLSTTQIY 298 LP T H RH+F +L + D+ ++ + GH ++TT Y Sbjct: 239 SYSLPNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRY 286 >gi|89147363|gb|ABD62542.1| integrase [uncultured bacterium] Length = 163 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 40/60 (66%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + Q +++ + G+ + HT RHSFATHL+ G D+R++Q +LGH +STT IYT+V Sbjct: 103 MLQAEVQKAVKRAGIAKRVSCHTFRHSFATHLIEVGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|255034767|ref|YP_003085388.1| integrase family protein [Dyadobacter fermentans DSM 18053] gi|254947523|gb|ACT92223.1| integrase family protein [Dyadobacter fermentans DSM 18053] Length = 430 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 65/281 (23%), Positives = 123/281 (43%), Gaps = 32/281 (11%) Query: 32 SKLTLQSYECDTRQFLIFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90 S+ TL+ + R+ F+ F Y + I + I Q E +++ + + + + K+ Sbjct: 144 SEGTLRHWRSTKRKVEAFIRFRYQRKDIEMTEIDQCFAEEFYDYLTLHLDEPLSEVTAKK 203 Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALNEKQALTLVDNVLLHTSHE 148 + + +K K+K+ SN L N LP L E +A+ H+ Sbjct: 204 LVKWTRQIVKTGVKKKVIP-SNPLEGFVCSGGNKEVLPLELFEVEAI-----------HK 251 Query: 149 TKW-IDARNSAILYLLYGC--GLRISEALSLTPQNIMD-----DQSTLRIQGKGDKIRIV 200 + ID + ++ C G + +L+P+NI+ ++ ++ +GK + +V Sbjct: 252 KQIDIDRISEVRDAFIFQCFTGFAYQDMYNLSPENIVKVGRAGEKWLIKDRGKTEVTEMV 311 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 P+LP V+ +++ Y P+ N +P+ R + Y+++L G+ Sbjct: 312 PILPIVQD-LIDKYQSHPYCRVNNRLIPVNSNFR--------YNVYLKELAVICGIKRPL 362 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 H RH+FA +L+NG L + +LGH + TTQ Y V Sbjct: 363 NTHLARHTFADMMLNNGVPLEDVGKMLGHRNIRTTQRYARV 403 >gi|223369818|gb|ACM88778.1| integrase [uncultured bacterium] Length = 163 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 42/69 (60%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 IR L+ Q+ IR + ++HT RH FATHLL +G D+R++Q +LGH + Sbjct: 94 IRRHHLHETRVQKAIRSAALASAIHKRISSHTFRHCFATHLLESGYDIRTVQELLGHADV 153 Query: 293 STTQIYTNV 301 STT IYT+V Sbjct: 154 STTMIYTHV 162 >gi|218559583|ref|YP_002392496.1| Integrase [Escherichia coli S88] gi|218366352|emb|CAR04103.1| Integrase [Escherichia coli S88] Length = 339 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 72/153 (47%), Gaps = 24/153 (15%) Query: 153 DARNSAILYLLYGC---GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 D+++S++L + C G R SEA +L + + T + KG K R VP+ Sbjct: 190 DSQSSSLLLIAKICLATGARWSEAENLQSHQVSKYRITY-TKTKGKKNRTVPI------- 241 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 +L +LP RG P F+R ++ R L LP H LRH+F Sbjct: 242 ----------SKDLYEELPKNRGKLFTPCRK-AFERAVK--RAGLELPEGQCTHVLRHTF 288 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 A+H + NGG++ ++ ILGH + T IY + + Sbjct: 289 ASHFMMNGGNILVLRDILGHADIKMTMIYAHFS 321 >gi|268611397|ref|ZP_06145124.1| phage integrase family site specific recombinase [Ruminococcus flavefaciens FD-1] Length = 357 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 58/249 (23%), Positives = 108/249 (43%), Gaps = 29/249 (11%) Query: 63 IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122 I +++ I FIS + + D++ LS +K +K+ + ++ I ++ Sbjct: 101 ISEMNSKRIEGFISGK--TDLSDKTRTDILSMLKQIMKFAEHSGFYVDNTISDL------ 152 Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 S+ R++NE + LTL + + L + D+ + +YL GLRI E +L +I Sbjct: 153 -SVRRSVNEIRVLTLQEQIRLENYLLS--CDSLITTGIYLTLYTGLRIGELCALKRSDID 209 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP----------------FDLNLNIQ 226 D + I G ++RI ++ + I E C + N+ Sbjct: 210 LDSGMIHISGTMQRLRIDTMISRTQVMITEPKSKCSIRDIPIPKAILNVCRMYYYNMPDH 269 Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286 L G + P + + ++ + L + HTLRH+FAT + G D++S+ I Sbjct: 270 CFLLTGDE-TYIEPRLLSYHFKKCTKACDLE-NIHYHTLRHTFATRCIERGVDVKSLSEI 327 Query: 287 LGHFRLSTT 295 LGH+ ++ T Sbjct: 328 LGHYDVNVT 336 >gi|161523680|ref|YP_001578692.1| integrase family protein [Burkholderia multivorans ATCC 17616] gi|189351551|ref|YP_001947179.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616] gi|160341109|gb|ABX14195.1| integrase family protein [Burkholderia multivorans ATCC 17616] gi|189335573|dbj|BAG44643.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616] Length = 188 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 11/155 (7%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-------QGKGDKIRIVPLLPSVR 207 RN A++ L + G+R+ E +L +++D +++ Q KG R V L +R Sbjct: 27 RNRAMVLLTHWAGMRVGEVAALLVGDVLDTDGSIKSEIRLAPEQTKGRHARTVFLGQKLR 86 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 + + Y + + N + PLF + +Y L + G+ ++H+ R Sbjct: 87 RELAAY--VASLN-NPTLDGPLFYTQKRAGFTANTLCQYFHWLYKEAGIH-GASSHSGRR 142 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 SF T+L S G +R + S+ GH +STTQ Y +VN Sbjct: 143 SFITNLASKGVGVRVLMSLAGHRDISTTQRYIDVN 177 >gi|89147450|gb|ABD62585.1| integrase [uncultured bacterium] Length = 163 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 39/59 (66%) Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 QR +++ + G+ HT RHSFAT LL G D+R+IQ +LGH ++TT+IYT+V Sbjct: 104 IQRQVKKAIKAQGINKYCHCHTFRHSFATQLLQKGHDIRTIQELLGHSDVATTEIYTHV 162 >gi|89147452|gb|ABD62586.1| integrase [uncultured bacterium] Length = 163 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/47 (53%), Positives = 35/47 (74%) Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G+ + H LRHSFATHLL +G D+R++Q +LGH + TT+IYT+V Sbjct: 116 GIEKRVSCHVLRHSFATHLLESGRDIRTVQELLGHTDVKTTEIYTHV 162 >gi|251780937|ref|ZP_04823857.1| DNA integration/recombination protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243085252|gb|EES51142.1| DNA integration/recombination protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 338 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 74/296 (25%), Positives = 128/296 (43%), Gaps = 39/296 (13%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL------------------SYTE 70 + LS T++SY Q L+ + Y EE+ I+ I ++ SYT Sbjct: 25 KNLSLKTIKSYH----QCLMLFSKYLEEEKDIKDITKVNKNIVEEYISFTKERGKYSYTS 80 Query: 71 -----IRAFISKRRT--QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 I+A + KR +++ + +L L IK+F YL++ I S I + +K Sbjct: 81 TIEGSIKANLHKRTDIGKEVSNSTLNNYLRNIKAFATYLEENNIVKNSRIHECKFIKTER 140 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 N++Q + L+ TK+ + R+ I+ L++ G+R+ E L LT ++ Sbjct: 141 R-----NKEQLTDVEYQKLVKCLDCTKFHEFRDYTIINLIFDTGMRLGETLHLTANDVDL 195 Query: 184 DQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240 + T+ I KG K R+V ++ K + + + P R G NP Sbjct: 196 LRRTILIPADLTKGRKDRVVFFSMNMAKLLQRWLKFKDTMQETELLFPTQR-TNGIISNP 254 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 F+R R + + + T H LR++F+ L +GG L + ILGH + T+ Sbjct: 255 N-FERNFRGYLKKSDIHKNITPHGLRNNFSRRFLLSGGSLMILSKILGHSSVKVTE 309 >gi|288556894|ref|YP_003428829.1| hypothetical protein BpOF4_19490 [Bacillus pseudofirmus OF4] gi|288548054|gb|ADC51937.1| hypothetical protein BpOF4_19490 [Bacillus pseudofirmus OF4] Length = 329 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 79/302 (26%), Positives = 134/302 (44%), Gaps = 35/302 (11%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS---KRRTQKIG 84 E+G + T++ Y D FL ++ + + +TI+ LS E+ F K R+ KI Sbjct: 18 EKGRKEATIKRYRYDLLDFLEWMKDHNK-PLTIEGFDSLSIDEMALFFDELIKHRSYKI- 75 Query: 85 DRSLKRSLSGIKSFLK-YLKKRKITTESNILNMRNLKKSNSLPR-----ALNEKQALTLV 138 R+ +R S I+ + Y+KK ++ T + + + L R + Q ++V Sbjct: 76 -RTTRRIYSVIQQLARFYIKKGQLQTHAILFYTQPELIQTPLQRKEWVSSAEADQLFSVV 134 Query: 139 DNVLLHTSHETK---WIDARNSAILYLL--YGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 + + ++ + + ARN +L+LL YGC L EA SLT ++I +++ +R+Q + Sbjct: 135 RSYEGLSENQMRARPLLIARNECLLHLLLHYGCSLH--EAASLTTRDIRFERNEIRVQSE 192 Query: 194 GDKIRIVPLLPSVRKAILEY------------YDLCPFDLNLNIQLPLFRGI----RGKP 237 RIVP+ ++ Y + PF + + Q FR + K Sbjct: 193 KGISRIVPITHEHKQLAYNYLKTIPEAVRPKLFSDEPFFVAFDFQRGTFRWSYEEDQPKQ 252 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L Q+ IRQ GL +A LRH++ L NG D S+Q L L + + Sbjct: 253 LTIISIQKMIRQEVERAGLRKGISAQHLRHTYILRKLLNGDDAISLQQQLSFKSLLSLKR 312 Query: 298 YT 299 YT Sbjct: 313 YT 314 >gi|260662141|ref|ZP_05863037.1| integrase [Lactobacillus fermentum 28-3-CHN] gi|260553524|gb|EEX26416.1| integrase [Lactobacillus fermentum 28-3-CHN] Length = 292 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 67/281 (23%), Positives = 122/281 (43%), Gaps = 19/281 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q WL ++G +KLT+ SY D R +L T +T +Q+ + A++ Sbjct: 16 QEWL----TKKGGAKLTIASYLTDLRDTAAYL---TSRGVT--NWQQVDRATLTAYLQSL 66 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + +++R +S ++ F YL+ + ++ + P L ++A L Sbjct: 67 NDKGRRTTTIQRRISSLRRFYVYLQVTGQVNHDPVALLKAKQTPRLAPVGLTPQEADLLP 126 Query: 139 DNVLLHTSHETKWID-ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 D+V K + RN A++ LL G R +E L + +D + + G+ + Sbjct: 127 DHV------PGKGVARERNRALVALLVATGARANELRDLQTGD-LDLELGVVYLGQSSR- 178 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 R+VPL + L Y D + + +F RG+PL+ + + + Sbjct: 179 RLVPLNEQA-QTYLTTYLTARADQSATDEGYVFLNNRGQPLSRQSIWEIVNATGQRANIE 237 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + T +R FA LL++G DL +Q ++GH + TTQ+Y Sbjct: 238 GAVTPQRVRDGFAYRLLAHGADLSLVQQLMGHQSILTTQVY 278 >gi|154000932|gb|ABS57034.1| integrase [uncultured bacterium] Length = 158 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/60 (48%), Positives = 39/60 (65%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 FQR ++ G+ T HTLRHS AT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 99 TFQRAFKRAVEQAGITKPATPHTLRHSSATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|227497442|ref|ZP_03927674.1| phage integrase [Actinomyces urogenitalis DSM 15434] gi|226833118|gb|EEH65501.1| phage integrase [Actinomyces urogenitalis DSM 15434] Length = 294 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 70/154 (45%), Gaps = 16/154 (10%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQ--STLRIQGKGDKIRIVPLLPSVRKAI 210 DAR + IL GLR +E ++ ++++ + L + GKG K R+VPL P + + Sbjct: 120 DARQTLILRCAAEAGLRRAEIAAIHARDLLQTSGGTVLAVHGKGSKQRLVPLAPGLAALL 179 Query: 211 LEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 + + P L N Q G L+ +R L +P T H LRH F Sbjct: 180 TDATNADPHGYALPNGQ--------GSHLSAERVADSVRHL-----IPSPYTLHALRHRF 226 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 AT DL S+Q +LGH +TTQ Y ++ Sbjct: 227 ATTAYDATRDLFSVQRLLGHASPTTTQRYVATDA 260 >gi|311695984|gb|ADP98857.1| phage integrase family protein [marine bacterium HP15] Length = 327 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 61/142 (42%), Gaps = 29/142 (20%) Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224 G R EA +L +++ + + T + K K R VP Sbjct: 195 ATGARWGEAENLQLRHVQEGKLTF-VNTKSGKSRSVP----------------------- 230 Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG-----LPLSTTAHTLRHSFATHLLSNGGD 279 + LF IR G F + RR L LP AH LRH+FA+H L NGGD Sbjct: 231 VSKELFEEIRKHLKEHGCFSFSLSAFRRALDKSGITLPPGQAAHVLRHTFASHFLMNGGD 290 Query: 280 LRSIQSILGHFRLSTTQIYTNV 301 + ++Q ILGH +S T Y+++ Sbjct: 291 IVTLQKILGHSHISMTLRYSHL 312 >gi|229092872|ref|ZP_04224006.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-42] gi|228690494|gb|EEL44277.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-42] Length = 54 Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 39/55 (70%), Gaps = 4/55 (7%) Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ + + +Y + HP Sbjct: 2 LRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKER----LRSVYMKHHP 52 >gi|109392319|ref|YP_655549.1| gp32 [Mycobacterium phage Halo] gi|189043119|ref|YP_001936060.1| integrase [Mycobacterium phage BPs] gi|239590043|ref|YP_002941890.1| gp32 [Mycobacterium phage Angel] gi|91980569|gb|ABE67289.1| integrase [Mycobacterium phage Halo] gi|171909234|gb|ACB58191.1| integrase [Mycobacterium phage BPs] gi|238890575|gb|ACR77564.1| gp32 [Mycobacterium phage Angel] gi|255927876|gb|ACU41496.1| gp32 [Mycobacterium phage Hope] Length = 398 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 75/171 (43%), Gaps = 21/171 (12%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVP----LLPSV 206 DAR +L L GLR +E ++ ++ + D L + GKG K R +P L + Sbjct: 179 DARVMLMLRLAAELGLRRAEVAQVSTSDLTESFDGYVLVVHGKGGKNRTLPVSDELAELI 238 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG--LPLSTTAHT 264 + + D P L F G L+P R + R G LP T H Sbjct: 239 ARGAAGHTDGAPATGYL------FPGDDAGHLSP-------RWVGRLCGDALPDGWTMHK 285 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 LRH FAT +LR++Q++LGH ++TT+IYT V MM D Sbjct: 286 LRHRFATRAYRGSRNLRAVQTMLGHASVATTEIYTAVEDAEVRAAMMAAGD 336 >gi|242241952|ref|ZP_04796397.1| integrase [Staphylococcus epidermidis W23144] gi|242234583|gb|EES36895.1| integrase [Staphylococcus epidermidis W23144] Length = 405 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 23/167 (13%) Query: 167 GLRISEALSLTPQNIMDDQSTLRIQG------KGDKI------------RIVPLLPS--- 205 G+RI E L++ P NI D+ TL I G +G+ + R + L Sbjct: 230 GMRIGELLAIQPNNIDFDKKTLEIDGTIHWRNEGNAVGFKDTTKTESSYRTISLTTRSCD 289 Query: 206 -VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 +RK +LE ++ + +F RG P++ R ++Q +G+ T+HT Sbjct: 290 ILRKVMLENKKAIQWESMYQDRGFIFTNYRGNPMSLSTINRNMQQSANNVGIRKHITSHT 349 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310 +RHS + L G L++I +GH TT QIY++V + D M Sbjct: 350 MRHSHISLLSQLGISLKAIMERVGHTDHKTTLQIYSHVTEQMDKDMM 396 >gi|111025268|ref|YP_707688.1| integrase/recombinase [Rhodococcus jostii RHA1] gi|110824247|gb|ABG99530.1| probable integrase/recombinase [Rhodococcus jostii RHA1] Length = 439 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 75/314 (23%), Positives = 126/314 (40%), Gaps = 39/314 (12%) Query: 14 LLKERQNWLQN-LEIERGLSKLTLQS----------YECDTRQFLIFLAFYTEEKITIQT 62 LK ++W L +R S T++S + CDT + +KIT Sbjct: 8 FLKHLRDWFTVFLPRQRAASPHTIESARRAWNMLLSHVCDTGGIPV-------DKITFPM 60 Query: 63 IRQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN--- 118 + + T F+ + R ++ + + L+ I+SF KY + T ++ ++ Sbjct: 61 LDRACIT---GFLEQTRAERNWTAATYNQRLACIRSFFKYAATAEPTLAIHLADLAGIPL 117 Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178 +K + P + +QA+ LL T R+ + L+Y R +E LS Sbjct: 118 MKAPATKPVSHMSQQAI----KALLAQPDPTIRTGLRDQFFMILMYDTAARDAEMLSAAI 173 Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI---RG 235 ++ + T+ + GKG K R +P+ Y F + + PLF I R Sbjct: 174 GDLDATRLTIDLLGKGSKPRRIPITKETAAHYRRY--TAAFHPDPQLGDPLFYTIHSHRK 231 Query: 236 KPLNPGVFQRYIRQL-----RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290 + ++ R IRQ R+ +P H LRHS A HL G L + LGH Sbjct: 232 RRMSDDNAARIIRQHAQAAHRKCAEVPAGAHPHMLRHSRAMHLYQAGMPLALLTEWLGHA 291 Query: 291 RLSTTQIYTNVNSK 304 TT IY + +++ Sbjct: 292 DPETTLIYAHADTE 305 >gi|13474989|ref|NP_106548.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|14025735|dbj|BAB52334.1| integrase/recombinase [Mesorhizobium loti MAFF303099] Length = 82 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/49 (59%), Positives = 35/49 (71%) Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 G+ T HTLRHSFATHLL NG D+R IQ +LGH LS+T YT V++ Sbjct: 13 GIDKRVTVHTLRHSFATHLLENGTDIRIIQVLLGHNNLSSTARYTKVSN 61 >gi|325520794|gb|EGC99805.1| site-specific tyrosine recombinase XerD [Burkholderia sp. TJI49] Length = 239 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 55/213 (25%), Positives = 92/213 (43%), Gaps = 15/213 (7%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L +E GL++ TL +Y D F +LA + + + T + +I+ R K Sbjct: 35 LWLEHGLARNTLDAYRRDLVLFSRWLAATHDAPLDLA-----DETMVTGYIAARSDGKA- 88 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 S R LS + + + + + L + + K++ P L+E Q L+ + Sbjct: 89 -TSSNRRLSVFRRYYGWAVREHRASADPTLRITSAKQAARFPSTLSEAQVEALLGAPDIA 147 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 T + R+ +L L+Y GLR+SE ++L + ++ +R+ GKG K R+VP Sbjct: 148 TP-----LGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVP-FG 201 Query: 205 SVRKAILEYY--DLCPFDLNLNIQLPLFRGIRG 235 V +E Y D P L LF RG Sbjct: 202 EVAHGWIERYLRDARPALLGARAADALFVTARG 234 >gi|154000904|gb|ABS57020.1| integrase [uncultured bacterium] Length = 158 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/60 (48%), Positives = 39/60 (65%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 FQR ++ G+ T HTLRHS AT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 99 TFQRAFKRAVEQAGITKPATPHTLRHSSATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|317153308|ref|YP_004121356.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2] gi|316943559|gb|ADU62610.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2] Length = 304 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 58/217 (26%), Positives = 95/217 (43%), Gaps = 9/217 (4%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL--NEKQALTLVDNVLLH 144 SL R + +++F + I ++ ++R + LP L EK+ L L Sbjct: 83 SLHRMKAALRAFFAWAIDVGIVDDNPARSIRMHRLPRKLPVFLTVGEKKRL------LKE 136 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 T + R+ A++ +L G G+R+ E +L +I D LR+ KG+ ++ + Sbjct: 137 LKGRTDFPAFRDRAMIEVLLGTGIRLGELAALDMDDIDLDAKHLRVWAKGNVPQVKFIKT 196 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 +R + Y ++ LF R L + R G+ T H Sbjct: 197 DLRTLLRRYLAERRRRGRPEME-ALFLSNRDSRLCQRQIANRLAHWLRKAGIEKELTPHG 255 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +RH+FATHL DL +Q LGH +STTQIYT++ Sbjct: 256 MRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHL 292 >gi|303243919|ref|ZP_07330259.1| integrase family protein [Methanothermococcus okinawensis IH1] gi|302485855|gb|EFL48779.1| integrase family protein [Methanothermococcus okinawensis IH1] Length = 291 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 70/292 (23%), Positives = 125/292 (42%), Gaps = 54/292 (18%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L+ SK TL+ Y F+ F + + IT+ F K+ Sbjct: 13 LDFHSSKSKETLKRYRSSLHIFMEFFPDKSWDDITVDDA---------IFFYNSYLSKVS 63 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNI-LNMRNLK-KSNSLPRALNEKQALTLVDNVL 142 ++ + L + FL + + K ++NI L +++LK ++N +LNE++ L+ N+ Sbjct: 64 KDTVVKRLKDVSRFLDWCVEYKYILQNNIKLYVKSLKLQNNGRDISLNEEEVNILLSNI- 122 Query: 143 LHTSHETKWIDARNSAILYLLYG-----CGLRISEALSLTPQNI-MDDQSTLRIQGKGDK 196 LY +Y G+RISE ++T +I ++D+ GKG+K Sbjct: 123 --------------KDYLYYVYTLFILTTGVRISEFKNITMNDIHLEDRLVYIRGGKGNK 168 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLN-------LNIQLPLFRGIRGKPLNPG---VFQRY 246 R+V + +L PF N LN + G L+ G ++ Y Sbjct: 169 DRMVFICD----------ELYPFLSNYIKHREMLNPKTDKLVNKNGYKLSEGHICEYRDY 218 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 +R++ + GL + T H LRH+F T +G +L+ + ++GH ++ T Y Sbjct: 219 LREVSK--GLSVKVTPHVLRHTFGTLACKHGMNLQVLSKLMGHSSMAITSKY 268 >gi|326774393|ref|ZP_08233658.1| integrase family protein [Streptomyces cf. griseus XylebKG-1] gi|326654726|gb|EGE39572.1| integrase family protein [Streptomyces cf. griseus XylebKG-1] Length = 387 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 71/316 (22%), Positives = 138/316 (43%), Gaps = 41/316 (12%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEE--KITIQTIRQLSYTEIR---------AFISK 77 RG S T+Q Y D R F ++L + ++ ++ + Q + +R F+ Sbjct: 56 RGASPNTVQGYAYDLRDFFVWLGQVGLDFRRVRLEVVAQF-FDWLRRPKLARAPEVFVLP 114 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 Q + + +L+R + + SF ++ +R + + + N+ + + S L Q Sbjct: 115 GVGQALENTTLQRKRAALASFYRFHARRDESVPALLGNLLARQPTGSYTPMLAHTQRGGE 174 Query: 138 VD--NVLLH---------TSHETKWIDA-----RNSAILYLLYGCGLRISEALSLTPQNI 181 V+ + +H TS ET+ + + R+ ++ LL GLRISEAL L ++ Sbjct: 175 VEYSPIRIHAHRKPPRTLTSDETQRLMSACNRRRDRFLIALLDEAGLRISEALGLRHADL 234 Query: 182 MDDQSTLRI----------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LF 230 + + + + KG K RI+P+ P + Y + L+ + LF Sbjct: 235 NLRKGEVHVVPRENNANQARVKGMKGRIIPVRPELFDRYAAYMESEYGTLDCDFVFANLF 294 Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290 R G P+ + +L++ G+ + H RH++AT LL + + +LGH Sbjct: 295 RAPIGSPMTRANVNELVERLQKRTGI-THFSPHVCRHTYATRLLRAEVPIEVVAELLGHA 353 Query: 291 RLSTT-QIYTNVNSKN 305 TT +IY++++ ++ Sbjct: 354 SPQTTAEIYSHLDVED 369 >gi|295134062|ref|YP_003584738.1| transposase [Zunongwangia profunda SM-A87] gi|294982077|gb|ADF52542.1| putative transposase [Zunongwangia profunda SM-A87] Length = 410 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 75/156 (48%), Gaps = 16/156 (10%) Query: 162 LLYGC--GLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYD 215 L+ C GL + LT NI MD I+ + K + +PLL R IL+ Y Sbjct: 252 FLFSCYTGLSYIDITKLTMDNIGMDFDGNQWIETERQKTKTALKIPLLNQARD-ILKRYQ 310 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274 P ++ LP + + LN Y++++ + G+ T H RH+FAT + L Sbjct: 311 DHPKTVHSKTLLPRYSN---QKLNS-----YLKEIADFCGIKKHLTFHIARHTFATTITL 362 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 +NG + ++ +LGH +L+TTQIY V K D M Sbjct: 363 TNGVPIETVSKLLGHTKLATTQIYARVVDKKVKDDM 398 >gi|330989733|gb|EGH87836.1| Orf28 [Pseudomonas syringae pv. lachrymans str. M301315] Length = 132 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 9/117 (7%) Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGV---- 242 LR+ GKG KIR +PL P + I Y + D+ + PLFR +RG G+ Sbjct: 2 LRVHGKGSKIRFLPLHPVAAERIYAYLER---DVERDAAPGPLFRSMRGTTTGAGITANG 58 Query: 243 FQRYIRQLRRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + Q R G+ + H LR + AT+ L + D+ +Q LGH +STT++Y Sbjct: 59 LYTIVAQWARVAGIEVERLGVHGLRATAATNALEHDADIAKVQMWLGHANISTTRLY 115 >gi|160886776|ref|ZP_02067779.1| hypothetical protein BACOVA_04789 [Bacteroides ovatus ATCC 8483] gi|298383599|ref|ZP_06993160.1| tyrosine type site-specific recombinase [Bacteroides sp. 1_1_14] gi|156107187|gb|EDO08932.1| hypothetical protein BACOVA_04789 [Bacteroides ovatus ATCC 8483] gi|298263203|gb|EFI06066.1| tyrosine type site-specific recombinase [Bacteroides sp. 1_1_14] Length = 381 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 54/218 (24%), Positives = 97/218 (44%), Gaps = 21/218 (9%) Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 R+L+G + KK K + + ++K S+ + ++ L+D + H +E Sbjct: 168 RALNGALNSAVRKKKMKANPFNELEKSEKIRKPESMRSYMTIEEVQALIDTPMPHEEYEI 227 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR---IVPLLPSV 206 A L+ + CGLRIS+ + L +++ D+ R+ K + +PL P Sbjct: 228 -----VKCAYLFSCF-CGLRISDIIKLKWKDVFVDRGQYRLAVSMKKTKEPIYLPLSPEA 281 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 K + E D N+ LP IR + ++ + G+ + HT R Sbjct: 282 LKWMPERGGKSSED-NV-FDLPSANTIRMQ----------LKPWAKAAGISKRFSYHTSR 329 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 H+FAT +L+ G DL ++ +LGH + TQ+Y + +K Sbjct: 330 HTFATMMLTLGADLYTVSKLLGHADVKMTQVYAKIINK 367 >gi|109897057|ref|YP_660312.1| phage integrase [Pseudoalteromonas atlantica T6c] gi|109699338|gb|ABG39258.1| phage integrase [Pseudoalteromonas atlantica T6c] Length = 305 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 110/230 (47%), Gaps = 21/230 (9%) Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK---KSNSLPRALNEKQALTLVDNVL 142 +S+ R++S I++ +K + E+ ++ + +K S LN Q TL + Sbjct: 67 KSVNRAMSAIRNVVKVGVIMGLVPENQLIQLSAIKLEKTSQHQGNPLNATQVNTLFSYLN 126 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVP 201 HTS ID RN AI LL G GLR SE +L ++++ + L +Q GKG+K R Sbjct: 127 KHTS----IIDVRNQAIFALLLGAGLRRSELTALHLKDLILHERQLVVQKGKGNKRRTAF 182 Query: 202 L----LPSVRKAILEYYDLCPF---DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 L + V +L D + +N ++ + RGI + + +R + + Sbjct: 183 LPKWCVEHVYSWLLLRGDNAGYLFNPVNKTNRININRGITTESV-----YLLVRNTAKQV 237 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 GL + + H LR ++ T LL DL +++ + GH +STT +Y ++K Sbjct: 238 GLG-NVSPHDLRRTYITRLLEQNIDLNTVRLMAGHQDISTTVVYDKRDNK 286 >gi|156138683|dbj|BAF75918.1| integron integrase [uncultured bacterium] Length = 160 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/60 (48%), Positives = 41/60 (68%), Gaps = 3/60 (5%) Query: 244 QRYIRQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 Q ++R +R + G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+ Sbjct: 101 QTFLRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 160 >gi|319654362|ref|ZP_08008449.1| hypothetical protein HMPREF1013_05069 [Bacillus sp. 2_A_57_CT2] gi|317393861|gb|EFV74612.1| hypothetical protein HMPREF1013_05069 [Bacillus sp. 2_A_57_CT2] Length = 388 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 98/231 (42%), Gaps = 35/231 (15%) Query: 87 SLKRSLSGIKSFLKYL---KKRKITTESNIL--NMRNLKKSNSLPRALNEKQALTLVDNV 141 +L R I+ FLK+L K K+ +L N+R+ + N + ++ + ++LV+ Sbjct: 150 TLSRKTVVIRGFLKFLYENKYIKVPLHQKMLSSNVRSFDRPN---KEMSSVEVISLVNYF 206 Query: 142 LLHTSHETKWIDARNSAILY----LLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGD 195 R ILY +L GLRI E + ++ +D + L + GKG Sbjct: 207 -------------RTHPILYGLISVLATTGLRIQELCNAKVSDLAYLDGEYWLTVMGKGQ 253 Query: 196 KIRIVPLLPSVRKAILEYYDL--CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 K R V + P+V KAI + F L+ + PLF +GK Y+ Sbjct: 254 KERQVLIHPNVLKAIEGFRKRRRLDFKLDPSDSSPLFTTSKGKAYGYKYLSNYLITKINK 313 Query: 254 LGLPL------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 L T H+ RH FA G DL +I+ LGH + TTQIY Sbjct: 314 ADLDFIKMRKNPITPHSFRHGFALISADQGADLLTIKESLGHSDIKTTQIY 364 >gi|172039474|ref|YP_001805975.1| putative integrase/recombinase [Cyanothece sp. ATCC 51142] gi|171700928|gb|ACB53909.1| putative integrase/recombinase [Cyanothece sp. ATCC 51142] Length = 360 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 62/261 (23%), Positives = 110/261 (42%), Gaps = 52/261 (19%) Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRK----------ITTESNI---------------LNM 116 K +RS+ +L+ + +F +Y K ITT N + Sbjct: 100 KRSERSINLALTAVTTFYEYHDAHKNVDPKKFDRLITTRGNTRRGLLDGISKSKPTRQKL 159 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 LK+ P L ++Q TLV+ + H R+ ++ LL G G+R+ E L L Sbjct: 160 VKLKEPKKFPGCLTDEQLETLVN-----SCHR-----LRDKFLILLLNGTGIRVGELLGL 209 Query: 177 TPQNIMDDQSTL----------RIQGKGDKIRIVPLLPSVRKAILEY--YDLCPFDLNLN 224 ++I D + KG + R +P++P + + +Y Y+ + N Sbjct: 210 QHEDIGDGSDYFIHVRKRRHNNEARAKGQE-RTIPVIPELLQMYNDYLIYEYPEVESNY- 267 Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284 + + ++ G G P+ V +L + G+ + H RH++AT LL G ++ Sbjct: 268 VFVNIWEGAIGMPMKAPVINTMFTRLSKKTGIKVY--PHLFRHTYATRLLKAGYSPERVK 325 Query: 285 SILGHFRLSTT-QIYTNVNSK 304 +LGH + TT IY++V S+ Sbjct: 326 YLLGHTSIQTTLDIYSHVISE 346 >gi|195952979|ref|YP_002121269.1| integrase family protein [Hydrogenobaculum sp. Y04AAS1] gi|195932591|gb|ACG57291.1| integrase family protein [Hydrogenobaculum sp. Y04AAS1] Length = 292 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 94/224 (41%), Gaps = 44/224 (19%) Query: 92 LSGIKSFLKYLKKRKITTESN-------ILNMR---NLKKSNSLPRALNEKQALTLVDNV 141 S +K ++K+ +R I +E N I +R N+KK P+AL+E + + V Sbjct: 70 FSALKHYIKFAYRRNILSEENYNDILKAIEEVREDLNMKKQKYPPKALSEDELEKIFKAV 129 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL---RIQG---KGD 195 D R I L G+R+ E L P N D+S + R+ K + Sbjct: 130 K----------DTRYYKIYNLFLNSGIRLIEFEKLRPDNFFLDKSNILWIRLDANMTKRN 179 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN----PGVFQRYIRQLR 251 K RI P++ + +E I L ++ I N GV Q Y +L Sbjct: 180 KPRITPVISFSKDKTIE------------IGLQIYEWIENFEYNFRVKRGVLQVYTDRLS 227 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 + L + S H+ RH++ T+L++ G ++ +GH + TT Sbjct: 228 KRLNIDFSI--HSFRHTYITNLVNYGFSAEIVKEFVGHSDIKTT 269 >gi|89147454|gb|ABD62587.1| integrase [uncultured bacterium] Length = 163 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/47 (53%), Positives = 35/47 (74%) Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G+ + H LRHSFATHLL +G D+R++Q +LGH + TT+IYT+V Sbjct: 116 GIEKRVSCHVLRHSFATHLLESGRDIRTVQELLGHTDVKTTEIYTHV 162 >gi|229136651|ref|ZP_04265326.1| Integrase-recombinase [Bacillus cereus BDRD-ST196] gi|228646811|gb|EEL02971.1| Integrase-recombinase [Bacillus cereus BDRD-ST196] Length = 390 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 67/153 (43%), Gaps = 10/153 (6%) Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 N IL L G RI E + +++ D + L++ GKGDK+R + + + + I E Sbjct: 218 NYTILLALASTGARIQELCTTRVKDVHYDGRYWLKVTGKGDKVRELFVSEHLYQCICEMR 277 Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266 F+ LN + PLF RG N + + L TAHT R Sbjct: 278 RRRGFETVLNQGDENPLFVNQRGNFYNSKTLSNQVTAMINKTKLDFLKHRENPVTAHTFR 337 Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298 H+FA + G DL + LGH + TT+IY Sbjct: 338 HAFAIMAVEQGHADLYHLMQTLGHEDIQTTKIY 370 >gi|325263946|ref|ZP_08130679.1| site-specific recombinase, phage integrase family [Clostridium sp. D5] gi|324030984|gb|EGB92266.1| site-specific recombinase, phage integrase family [Clostridium sp. D5] Length = 355 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 67/297 (22%), Positives = 123/297 (41%), Gaps = 30/297 (10%) Query: 27 IERGLSKLTLQSYECDTRQFLIFL-------AFYTEEKITIQTIRQLSYTEIRAFISKRR 79 IE S T SY D R F FL YT ++ T++ + ++ +I + + Sbjct: 39 IEPKSSAKTRISYAYDIRIFFHFLMENNPVYKNYTVDQFTVKDLERIEPVDIEEYQEYLK 98 Query: 80 TQKIGD--------RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131 K + + L R +S ++SF Y K ++ ++ L + K + L+ Sbjct: 99 VYKGSEDKQITNTEKGLARKMSALRSFYAYFFKHQVIEKNPTLLVDMPKLHDKAIIRLDT 158 Query: 132 KQALTLVDNVLLH----TSHETKWIDA---RNSAILYLLYGCGLRISEALSLTPQNIMDD 184 + +L++ V T + + R+ AIL LL G G+R+SE + L Q++ Sbjct: 159 DEVASLLEYVEHGGDDLTGQRKVYFEKTKNRDLAILTLLLGTGIRVSECVGLDIQDVDFK 218 Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLN 239 + +++ KG +V V A+ Y P + N LF + K + Sbjct: 219 NNGVKVTRKGGNEMVVYFGEEVENALKMYLYTTRKSTAPLPGHEN---ALFLSTQRKRIG 275 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + +++ R + T H LR ++ T L GD+ + +LGH ++TT+ Sbjct: 276 VQAVENMVKKYARQITPNKKITPHKLRSTYGTALYKETGDIYLVADVLGHKDVNTTK 332 >gi|90020115|ref|YP_525942.1| Fis family transcriptional regulator [Saccharophagus degradans 2-40] gi|89949715|gb|ABD79730.1| phage integrase [Saccharophagus degradans 2-40] Length = 362 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 58/222 (26%), Positives = 97/222 (43%), Gaps = 23/222 (10%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 ++K +G++ F KY+ + E +N+ LP L + L+D+ Sbjct: 71 TVKTDRNGLQFFYKYV----LQKEWKWVNIVKPPVVKVLPDVLTIDEIHRLLDSAK---- 122 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS 205 D R + + + GLR+SE L+L +I ++ + I +GKG K R V L S Sbjct: 123 ------DLRYQTFILVCFSMGLRLSETLNLKVGDIDSERMKVHIREGKGKKDRYVTLPLS 176 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP-----LNPGVFQRYIRQLRRYLGLPLST 260 +A+ +Y+ N N P + + G Q+ R + R+ G+ Sbjct: 177 ALQALRKYWKT---HRNPNYLFPSGNTAAQRQDATIHMGRGRLQQKFRSIVRHSGIRKKI 233 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + H+LRHS+ T L LR IQ +GH +TT YT ++ Sbjct: 234 SIHSLRHSYGTLLTEANISLRKIQQEMGHVSPNTTARYTQLS 275 >gi|148655018|ref|YP_001275223.1| phage integrase family protein [Roseiflexus sp. RS-1] gi|148567128|gb|ABQ89273.1| phage integrase family protein [Roseiflexus sp. RS-1] Length = 337 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 79/184 (42%), Gaps = 22/184 (11%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR----IQGKGDKIRIVPLLPSVRKAI 210 RN+A+L+ L+ G RISE LSL ++++ D + + GKG + R V L ++ I Sbjct: 152 RNAALLHTLFSTGARISEVLSLNVEDVLSDDGCIAPRAFVVGKGQRRRAVFLREHAQQVI 211 Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY---------IRQLRRYLGLPL--- 258 Y L + G RG G + I G P Sbjct: 212 ARYLTARRATFPHAEALFISHGPRGAGGRLGRIAAWSIVTDAASAIASQVEQEGRPREAR 271 Query: 259 ---STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + T HT RH AT LL+ G L + +ILGH + T+I +++ + + E++D Sbjct: 272 ALRTVTPHTFRHFVATWLLNEGAQLSEVSAILGH---ANTRITEQYYARHTDERLQELHD 328 Query: 316 QTHP 319 Q P Sbjct: 329 QFAP 332 >gi|110800856|ref|YP_695375.1| phage integrase family site specific recombinase [Clostridium perfringens ATCC 13124] gi|110675503|gb|ABG84490.1| site-specific recombinase, phage integrase family [Clostridium perfringens ATCC 13124] Length = 354 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 29/161 (18%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-----------GKG-----DKIRIVPL 202 ++YL G+RI E L LT +I + + + G G + IRI+P+ Sbjct: 193 VVYLAVNTGMRIGEILGLTWNDIDFNNCLISVNKQWKILKDNSWGLGSVKSKNSIRIIPI 252 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 SV + +L+Y + D R K N + R L+ Y G +S Sbjct: 253 SNSVSEELLKYKTIINID---------NRVFNFKSKNT-ILSRVNILLKEY-GFNIS--L 299 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 H LRH++AT L++NG D ++ ILGH T ++Y++VN+ Sbjct: 300 HELRHTYATKLIANGVDFKTAAKILGHSVEQTMKVYSHVNN 340 >gi|89147462|gb|ABD62591.1| integrase [uncultured bacterium] Length = 163 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/47 (55%), Positives = 33/47 (70%) Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G+ T H RHSFATHLL NG D+R++Q +LGH + TT IYT+V Sbjct: 116 GVKKHVTPHIFRHSFATHLLENGYDVRTVQELLGHSDVKTTMIYTHV 162 >gi|163943320|ref|YP_001642550.1| integrase family protein [Bacillus weihenstephanensis KBAB4] gi|163865517|gb|ABY46575.1| integrase family protein [Bacillus weihenstephanensis KBAB4] Length = 390 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 67/153 (43%), Gaps = 10/153 (6%) Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 N IL L G RI E + +++ D + L++ GKGDK+R + + + + I E Sbjct: 218 NYTILLALASTGARIQELCTTRVKDLHYDGKYWLKVTGKGDKVRELFISEHLYQCICEMR 277 Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266 F L+ + PLF RG N + + + L TAHT R Sbjct: 278 RRRGFQTVLDRGDESPLFVNQRGNFYNSKTLSNQVTDMIKKTNLEFLQYRENPVTAHTFR 337 Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298 H+FA + G DL + LGH + TT+IY Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370 >gi|288549717|ref|ZP_06390780.1| site-specific recombinase, phage integrase family [Enterobacter cancerogenus ATCC 35316] gi|288318031|gb|EFC56969.1| site-specific recombinase, phage integrase family [Enterobacter cancerogenus ATCC 35316] Length = 241 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 72/148 (48%), Gaps = 21/148 (14%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212 D R A+LYL G R +A L +N++ ++ + ++ K + R VP+ V ++ Sbjct: 85 DNRKIAVLYL--STGARWGDAARLKAENVIHNRVSF-VKTKTNTPRTVPISDDVAAYVVG 141 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 RG ++ F+R +++++ LP H LRHSFATH Sbjct: 142 KT----------------RGFLFPEVSYAEFRRILKEVKP--DLPAGQATHALRHSFATH 183 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + NGG++ ++Q IL H +++ T +Y + Sbjct: 184 FMINGGNIITLQRILDHTKIAQTMVYAH 211 >gi|215407994|emb|CAS02324.1| integron integrase [uncultured bacterium] Length = 158 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 37/57 (64%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IY Sbjct: 99 TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIY 155 >gi|182413035|ref|YP_001818101.1| integrase family protein [Opitutus terrae PB90-1] gi|182414799|ref|YP_001819865.1| integrase family protein [Opitutus terrae PB90-1] gi|182416162|ref|YP_001821228.1| integrase family protein [Opitutus terrae PB90-1] gi|182416192|ref|YP_001821258.1| integrase family protein [Opitutus terrae PB90-1] gi|177840249|gb|ACB74501.1| integrase family protein [Opitutus terrae PB90-1] gi|177842013|gb|ACB76265.1| integrase family protein [Opitutus terrae PB90-1] gi|177843376|gb|ACB77628.1| integrase family protein [Opitutus terrae PB90-1] gi|177843406|gb|ACB77658.1| integrase family protein [Opitutus terrae PB90-1] Length = 432 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 78/293 (26%), Positives = 136/293 (46%), Gaps = 24/293 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 ++ +L ER ++ +T++ + T FL FL + + ++ +S ++ A + +R Sbjct: 145 YIVHLRDERAVAPVTVKRHLAHTTAFLEFL----KHDVQRPRLKTISAEQVEAQL--KRH 198 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLV 138 K +++ S ++SFL+Y T S ++ + + SLPR + E AL V Sbjct: 199 MKDSKDNVRSLSSSLRSFLRYCADHGHTQADFSELVPRQRHYRHASLPRGI-EDSALERV 257 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKI 197 L +TK AR+ AI+ LL G+R A L +++ Q+ +R + KG K Sbjct: 258 ----LAAIDKTKPNGARDYAIILLLMAYGIRAISAAKLVMEDLDWRQAKIRFRAQKGGKE 313 Query: 198 RIVPLLPSVRKAILEYY----DLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 IVPLL +V AI+E+ P ++ L+ + P G V + Y+ + Sbjct: 314 VIVPLLDAVGDAIIEWLRHRDPRTPHREVFLSTKAP--HGSLSSMAISTVVKHYLHKAGV 371 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + AH+LRHS+A L + +++I LGH + TT IY + K Sbjct: 372 HQP---GRGAHSLRHSWAIRALEHDQPIKAIADALGHRYIDTTYIYAKADLKT 421 >gi|13475042|ref|NP_106602.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|14025789|dbj|BAB52388.1| integrase/recombinase [Mesorhizobium loti MAFF303099] Length = 237 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 19/183 (10%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213 R+ A+ L++ G R+ E L+L ++ + +R+ GKG+K+R+ P+ + + + E Sbjct: 45 RDYALFSLMFNTGARVQEILNLRICDLRLVSPCQVRLHGKGNKVRLCPIWRNTAQLLQEL 104 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLGLPL---------STTAH 263 + + + +F RG PL GV RY+ LR+Y+ + S H Sbjct: 105 INTQHSPSDNPAEQRVFLNDRGTPLTRFGV--RYL--LRKYVDMAAGEESTLAEKSIHPH 160 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQ 323 +LRH+ A HLL G D+ +I LGH L+ T Y + D + +Q P + Sbjct: 161 SLRHTTAIHLLKAGVDIATISQWLGHSGLNVTMRYARADI----DMKRQALEQVFPDVMS 216 Query: 324 KDK 326 K Sbjct: 217 SAK 219 >gi|304396875|ref|ZP_07378755.1| integrase family protein [Pantoea sp. aB] gi|304355671|gb|EFM20038.1| integrase family protein [Pantoea sp. aB] Length = 338 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 95/231 (41%), Gaps = 43/231 (18%) Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL-NMRNLKKSNSLPRALNEKQALTL 137 R + + R++ L+ ++ L++ T +N L N+R K S S E LT+ Sbjct: 123 RVKTVTPRTVNLELAYFRAMFNELRRLDEWTAANPLENVREFKISES------EMAYLTI 176 Query: 138 VD-NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 + LL ++ D + I+ + G R SEA L I Q + ++ KG K Sbjct: 177 EEIRTLLAECENSRSKDL--TTIVKICLATGARWSEAEGLKGNQIRAGQ-IIYVKTKGKK 233 Query: 197 IRIVPL-------LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 R VP+ LPS RKA L + P + R G+ Sbjct: 234 NRAVPITEKLHSDLPSSRKAELLFK-------------PCYSAFRKAMQRAGI------- 273 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 P H LRH+FA+H + NGG++ +Q ILGH + T Y++ Sbjct: 274 -----ETPAGQLTHVLRHTFASHFMMNGGNILVLQRILGHTDIKVTMRYSH 319 >gi|149197314|ref|ZP_01874366.1| phage integrase [Lentisphaera araneosa HTCC2155] gi|149139860|gb|EDM28261.1| phage integrase [Lentisphaera araneosa HTCC2155] Length = 248 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/201 (30%), Positives = 90/201 (44%), Gaps = 30/201 (14%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 ++K + F +Y+ KR E L + + + SLP L++ D LL S Sbjct: 67 TVKMDRCALSFFYQYVLKR----EWKWLEIVRIPRVKSLPDILSQ-------DETLLILS 115 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPS 205 H K AR L +Y GLRISE + + +I D+ L ++ KG K R+VPL P Sbjct: 116 HLEK---ARYRTCLTAIYSMGLRISEGVRIQTGDICKDRMRLHVRNSKGYKDRLVPL-PQ 171 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP---------LNPGVFQRYIRQLRRYLGL 256 V +L Y + ++ N L LF GK ++ G Q + GL Sbjct: 172 VTYQMLRDY----WVMHRN-PLLLFPRYAGKSRSNSKTTLHMDKGGVQSAFKAALADSGL 226 Query: 257 PLSTTAHTLRHSFATHLLSNG 277 + H+LRHS+ATHL+ G Sbjct: 227 AKQVSVHSLRHSYATHLVEAG 247 >gi|330997948|ref|ZP_08321782.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] gi|329569552|gb|EGG51322.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] Length = 431 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 70/151 (46%), Gaps = 20/151 (13%) Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYY 214 L+GC GL + +LT I MD I + K R+ VPL+ ++ I Y Sbjct: 252 FLFGCFTGLSYIDIKTLTHDKIQRMDFDGEEWIITRRTKTRVSSNVPLMEIAKELIERYR 311 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL- 273 L DL I P N V +++Q+ + G+ H RH+FAT + Sbjct: 312 GLAGGDLVFPI-----------PSNS-VCNTHLKQIAKACGIHKEIGFHLSRHTFATTVY 359 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 L NGG + ++ ILGH +STTQIY V ++ Sbjct: 360 LCNGGTIEALSKILGHKHISTTQIYAEVTNR 390 >gi|229104798|ref|ZP_04235459.1| Integrase/recombinase (XerC/CodV family) [Bacillus cereus Rock3-28] gi|228678671|gb|EEL32887.1| Integrase/recombinase (XerC/CodV family) [Bacillus cereus Rock3-28] Length = 328 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 99/222 (44%), Gaps = 24/222 (10%) Query: 83 IGDRSLKRSLSGIKSFLKYL----KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + D ++ L IK F +L ++ KI +I N++ +K L L E + + ++ Sbjct: 97 LSDTTIANYLRNIKVFFNFLFQVEREIKINPVESIQNIKPKRKQKPL---LTEDEIIRVL 153 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + T H RN + LL G+RISE L L P+ I + I+ +K + Sbjct: 154 RVFDVTTFH-----GYRNWIVTRLLLDTGMRISECLELCPEKIDFKHKAILIENSKNKQQ 208 Query: 199 IVPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 + + K L Y D N + P IRG L F++ +R+ + + Sbjct: 209 RYTYFSFKMANDLKRWLLYRDRYS---NSDYMFP---TIRGTQLEVRNFEKSLREAGKRV 262 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 G +S H LR++FA + + NGGD S+ ILGH + TQ Sbjct: 263 G--VSIHPHQLRNNFAKYYVLNGGDWASLSRILGHSSVEVTQ 302 >gi|218848070|ref|YP_002454723.1| integrase-recombinase [Bacillus cereus G9842] gi|218546201|gb|ACK98594.1| integrase-recombinase [Bacillus cereus G9842] Length = 381 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 68/171 (39%), Gaps = 10/171 (5%) Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTL--RIQGKGDKIRIVPLLPSVRKAILEY 213 N I+ LL GLRI E S ++ + L R+ GKGDK R + P + + I EY Sbjct: 209 NYMIILLLVSTGLRIQEVASAKIGDLFRAEGKLWLRVIGKGDKPREAYISPHLFECISEY 268 Query: 214 YDLCPFDLNLN--IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTL 265 LN PL + N + + +P TAHT Sbjct: 269 RSRKGLKTQLNRLDNSPLIVSNHLRKFNSTYLSNKVTSILSQARIPCVEQRENPITAHTF 328 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 RH FA N +L IQ LGH +TT+IY + K + + DQ Sbjct: 329 RHGFAIMAAENDVELLRIQQTLGHASANTTKIYLEKHMKRKHNAALSFADQ 379 >gi|293371342|ref|ZP_06617779.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|294645314|ref|ZP_06723030.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294808774|ref|ZP_06767507.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|292633702|gb|EFF52257.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292639393|gb|EFF57695.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294444071|gb|EFG12805.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] Length = 376 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 18/155 (11%) Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR---IVPLLPSVRKAILEY 213 SA L+ + CGLRIS+ + L +++ D R+ K + +PL K + E Sbjct: 227 SAYLFSCF-CGLRISDIIGLQWKDVFIDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPER 285 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 D D ++ P + I+ + G+ T HT RH+FAT + Sbjct: 286 GDKTADDHVFDL--------------PSGINQLIKPWAKAAGISKRFTFHTARHTFATMM 331 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 L+ G DL ++ +LGH + TQ+Y + +K D Sbjct: 332 LTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKKDD 366 >gi|149922734|ref|ZP_01911160.1| Phage integrase [Plesiocystis pacifica SIR-1] gi|149816439|gb|EDM75939.1| Phage integrase [Plesiocystis pacifica SIR-1] Length = 374 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 20/160 (12%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ----------GKGDKIRIVPL 202 D + AI+ L GLR E L ++ ++ L ++ K DKIR++P+ Sbjct: 200 DGIDLAIVLLGGDAGLRAGEIRGLHWDSLDFQRNRLTVERAEWHGHITTPKHDKIRVLPM 259 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 + KA+ + P + L + P G+PL G+ + +R++ + GL Sbjct: 260 TQRLNKALRQ----LPRECKLVLPQP-----SGEPLTAGLLDKRLRRVEKRAGL-RDKGP 309 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 HTLRH+F +HL G R IQ + GH L TT+ Y +++ Sbjct: 310 HTLRHTFCSHLAMRGIPARVIQQLAGHSSLVTTERYMHLS 349 >gi|330504101|ref|YP_004380970.1| phage integrase family protein [Pseudomonas mendocina NK-01] gi|328918387|gb|AEB59218.1| phage integrase family protein [Pseudomonas mendocina NK-01] Length = 339 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/150 (24%), Positives = 66/150 (44%), Gaps = 29/150 (19%) Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 + + + G R EA +LTP + + T + KG ++R +P+ + + I ++ Sbjct: 186 AMVAAICLATGARWGEAQALTPDRVRNQLVTF-VNTKGKRVRSIPIALELEQQIHRHFK- 243 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG-----LPLSTTAHTLRHSFAT 271 G F + + LG +P ++H LRH+FA+ Sbjct: 244 ----------------------QHGQFSNCLNSFDKALGESRLPVPAGQSSHVLRHTFAS 281 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 H + NGG++ ++Q ILGH L+ T Y ++ Sbjct: 282 HFVMNGGNILTLQKILGHTTLAMTMRYAHL 311 >gi|312142468|ref|YP_003993914.1| integrase family protein [Halanaerobium sp. 'sapolanicus'] gi|311903119|gb|ADQ13560.1| integrase family protein [Halanaerobium sp. 'sapolanicus'] Length = 221 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 59/209 (28%), Positives = 87/209 (41%), Gaps = 33/209 (15%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 K+ +P L E++ LL +E RN ++ L+ GLR+ E L+L Sbjct: 3 KRGRRIPEVLREEE-----QKQLLEVFNERYPTALRNKTMIRLMLKAGLRLGETLNLKWN 57 Query: 180 NIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGI 233 NI + L I +GKG K R + L + ++ + L +L L +F + Sbjct: 58 NINFPAAKLSIVEGKGRKDRNLWLGEKTLNQLGKWRERQNKVLAEKNLENENNL-VFTSL 116 Query: 234 RGKPLNP--------------GVFQRYIRQLRRYLGLPLSTT-------AHTLRHSFATH 272 GK LN G+ + + R G L T H LRH+FAT Sbjct: 117 AGKKLNEANVRKMVYNYAEKTGIQEEVEKNYRDEEGKELEETYWQKKVSPHVLRHTFATE 176 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 L DLR +Q LGH + TT IYT++ Sbjct: 177 LYRMTNDLRKVQKTLGHSSIQTTMIYTHL 205 >gi|220909514|ref|YP_002484825.1| integrase family protein [Cyanothece sp. PCC 7425] gi|219866125|gb|ACL46464.1| integrase family protein [Cyanothece sp. PCC 7425] Length = 373 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 56/223 (25%), Positives = 102/223 (45%), Gaps = 29/223 (13%) Query: 96 KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155 KSFL ++ K K T + + +K LP+ L+E+ +++ K I R Sbjct: 140 KSFLHHVNKGKETR----IRLLKIKPPRKLPKTLDEEAVKRVIEAC--------KRI--R 185 Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP------SVRKA 209 + ++ LL+ G+RI +AL L +++ + ++I + D I V K Sbjct: 186 DKFLITLLHETGMRIGQALGLRHEDVHSWDNEIQIVPRDDNINGARAKTRDTYKLHVSKE 245 Query: 210 ILEYYDLC-----PFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 ++ Y P D++ + + + ++ G+RG PL+ Q R+L R + T H Sbjct: 246 LMGLYSAYVTTEYPEDIDSDYVFVNIWEGMRGYPLSYSTVQALFRRLSR--DAEVRVTPH 303 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKN 305 RH+ AT L+ G + +Q LGH + TT Y +V +++ Sbjct: 304 MFRHTHATDLIRTGMQMSYVQKRLGHASIQTTIDTYVHVTNED 346 >gi|70607234|ref|YP_256104.1| integrase/recombinase XerD [Sulfolobus acidocaldarius DSM 639] gi|68567882|gb|AAY80811.1| integrase/recombinase XerD [Sulfolobus acidocaldarius DSM 639] Length = 287 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 77/288 (26%), Positives = 135/288 (46%), Gaps = 56/288 (19%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI-----SKRRTQKIG 84 G S+ T++ Y + FL F+ + RQ++ +++ A++ S R++++ Sbjct: 26 GASENTIRLYSIAIKDFLDFVK---------KDPRQVTNSDVNAWLLKILKSSTRSKRVR 76 Query: 85 DRSLKRS---------LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL-NEKQA 134 + + KR L+ + FLK+L K ++K + +P+A NE +A Sbjct: 77 EENEKRRMKLTTAKIYLTAVLRFLKWLGK-------------DVKPT--VPKARKNEIRA 121 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-K 193 LT + L S + R++ IL LL G+R E LS+ Q+I ++ + I+ K Sbjct: 122 LTYEELEKLKASAKK----LRDAVILNLLIDTGIRAKELLSIKVQDIDLERRRIIIRNTK 177 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 + RIV S A+L+ Y + N + P + I + R +R+L + Sbjct: 178 NGESRIV-FFTSHTGALLKKY------IQKNKKEPEDKLIN---MTYQALYRKLRRLGKK 227 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +G+ L H LRH+FAT + G L +Q ILGH + TQ+YT++ Sbjct: 228 IGIDLR--PHILRHTFATEAIRKGIPLPVVQKILGHKDIRVTQVYTHL 273 >gi|89098276|ref|ZP_01171161.1| tyrosine recombinase [Bacillus sp. NRRL B-14911] gi|89087133|gb|EAR66249.1| tyrosine recombinase [Bacillus sp. NRRL B-14911] Length = 389 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 62/265 (23%), Positives = 109/265 (41%), Gaps = 48/265 (18%) Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK---KSNSLPRALNE 131 I+K T+K S+ R +S ++S KYL + E RN+ + N + L Sbjct: 115 INKNETKKPEKVSINRKISSLRSLFKYLTTQTENEEGEPYFYRNVMLKIEVNKVKETLGA 174 Query: 132 KQA---------------LTLVDNV----LLHTSHETKWID---ARNSAILYLLYGCGLR 169 + + L V N+ L S + + R+ AIL L G G+R Sbjct: 175 RASKISSKIFQNDEDVSFLDFVQNIYETELPEDSRKKAYFKRDKERDIAILSLFLGSGIR 234 Query: 170 ISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL--------------EYYD 215 ++E +L +++ ++T+ I KG K +P++P + + E YD Sbjct: 235 VNELSNLRLRDLDFQENTINIIRKGGKQDTIPVVPESMEDVKNLLKIRAERYNASNEDYD 294 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275 + N+ +PL G + ++Y + + S + H LRH++ T+L Sbjct: 295 YVFVNKKKNVAVPLSNRAIG-----DLVKKYTKAFKS----NKSMSPHKLRHTYGTNLWE 345 Query: 276 NGGDLRSIQSILGHFRLSTTQIYTN 300 GD+ + LGH ST +Y+N Sbjct: 346 ETGDIHLLMRQLGHSSTSTAALYSN 370 >gi|240173390|ref|ZP_04752048.1| phage integrase family protein [Mycobacterium kansasii ATCC 12478] Length = 346 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 75/314 (23%), Positives = 131/314 (41%), Gaps = 28/314 (8%) Query: 12 FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71 +E L +L +L RG S T+++Y D FL TE +T+ ++ + Sbjct: 18 WEGLDSANAFLTHLA-GRGFSAATVRAYAFDVANLARFL---TERDVTLSEVQAPLVFDW 73 Query: 72 RAFISKRRTQK-----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126 + RRT + ++ R ++ +++ +YL + + + R + Sbjct: 74 IDWQGVRRTGRPQPGSAAASTVNRRVAAVRALFEYLAMTGRRGNNPVPSPRRGQGLRRSE 133 Query: 127 RAL-------NEKQALTLVDNV-LLHTSHETKWIDA--------RNSAILYLLYGCGLRI 170 R L + LV LL S IDA R+ A++ + GLR Sbjct: 134 RGLLGHLGPGRARPGGRLVRQPQLLPESLPASDIDAFVATLGSHRDRAMVLAMLLGGLRS 193 Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPL 229 +EA L ++ + LR+ GKG K R VP+ + + Y L P L+ + Sbjct: 194 AEARGLLLADVDMGRRRLRVIGKGGKERYVPVDAAFFTEVAAYLRLERPAGLSTPQCFVV 253 Query: 230 FRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288 RG G P++ + R+ R G + H LRH++ T L S G DL ++++++G Sbjct: 254 LRGPTTGAPVSEAGLRSLFRRHRELSG-SIRVRPHRLRHTYGTELASAGIDLLALRALMG 312 Query: 289 HFRLSTTQIYTNVN 302 H TT Y +++ Sbjct: 313 HASPETTARYVHLS 326 >gi|197285081|ref|YP_002150953.1| integrase/recombinase [Proteus mirabilis HI4320] gi|194682568|emb|CAR42606.1| putative integrase/recombinase [Proteus mirabilis HI4320] Length = 330 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 3/146 (2%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R++AIL +L GCGLR SE ++L ++I ++GKG+K RI + + + + Sbjct: 169 RDAAILSVLLGCGLRRSEIVALNYEHIQFRDQAFIVRGKGNKERISYMPEDTWERVQLWI 228 Query: 215 DLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 D D L ++ F + + + YI + R+ H LR +FA+ Sbjct: 229 DEIRGAQDGALFTRIRRFDDVTDERITDQAIY-YILETRQQESGIDKFAPHDLRRTFASA 287 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIY 298 +L NG D+ +++ +GH + TTQ Y Sbjct: 288 MLDNGEDIVTVKDAMGHASIMTTQRY 313 >gi|53714080|ref|YP_100072.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|253567394|ref|ZP_04844843.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|255009170|ref|ZP_05281296.1| tyrosine type site-specific recombinase [Bacteroides fragilis 3_1_12] gi|298483947|ref|ZP_07002117.1| tyrosine type site-specific recombinase [Bacteroides sp. D22] gi|313146917|ref|ZP_07809110.1| integrase [Bacteroides fragilis 3_1_12] gi|52216945|dbj|BAD49538.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|251943963|gb|EES84491.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|298269856|gb|EFI11447.1| tyrosine type site-specific recombinase [Bacteroides sp. D22] gi|313135684|gb|EFR53044.1| integrase [Bacteroides fragilis 3_1_12] Length = 376 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 18/155 (11%) Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR---IVPLLPSVRKAILEY 213 SA L+ + CGLRIS+ + L +++ D R+ K + +PL K + E Sbjct: 227 SAYLFSCF-CGLRISDIIGLQWKDVFIDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPER 285 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 D D ++ P + I+ + G+ T HT RH+FAT + Sbjct: 286 GDKTADDHVFDL--------------PSGINQLIKPWAKAAGISKRFTFHTARHTFATMM 331 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 L+ G DL ++ +LGH + TQ+Y + +K D Sbjct: 332 LTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKKDD 366 >gi|281424486|ref|ZP_06255399.1| integrase [Prevotella oris F0302] gi|281401323|gb|EFB32154.1| integrase [Prevotella oris F0302] Length = 410 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 16/148 (10%) Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 ++ C GL + +LTP+NI +DD+ + + + + LL + K I+E Y Sbjct: 249 FVFSCFTGLAYIDVANLTPENIVTLDDKQWIMTKRQKTSVATNVLLLDIPKNIIEKYSGK 308 Query: 218 PF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 + D L P+ R Y++++ G+ T H RH+FAT LS Sbjct: 309 TYRDGKL---FPMLTNQRTNS--------YLKEIADICGIKKDLTFHMARHTFATMSLSK 357 Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSK 304 G + S+ +LGH + TTQIY + +K Sbjct: 358 GVSMESVSKMLGHTNIKTTQIYARITNK 385 >gi|256840382|ref|ZP_05545890.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13] gi|256737654|gb|EEU50980.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13] Length = 376 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 18/155 (11%) Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR---IVPLLPSVRKAILEY 213 SA L+ + CGLRIS+ + L +++ D R+ K + +PL K + E Sbjct: 227 SAYLFSCF-CGLRISDIIGLQWKDVFIDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPER 285 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 D D ++ P + I+ + G+ T HT RH+FAT + Sbjct: 286 GDKTADDHVFDL--------------PSGINQLIKPWAKAAGISKRFTFHTARHTFATMM 331 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 L+ G DL ++ +LGH + TQ+Y + +K D Sbjct: 332 LTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKKDD 366 >gi|315608518|ref|ZP_07883504.1| integrase [Prevotella buccae ATCC 33574] gi|315249790|gb|EFU29793.1| integrase [Prevotella buccae ATCC 33574] Length = 447 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 80/317 (25%), Positives = 142/317 (44%), Gaps = 49/317 (15%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 + + I+R L L++Y+ L L Y ++K + I LS + +AFI Sbjct: 164 ERIGIDRALKTFELRTYQ------LSLLREYVQKKHKVSDI-PLSQLD-KAFIEGFEYYL 215 Query: 83 IGDRSLKRS-----LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 DR LKRS LS +++ ++ K+ + L+ K+ PR++ +++ + Sbjct: 216 TIDRRLKRSSISSALSTLQTIVRMAVKKGVLDFYPFLDY-GYKRPKGEPRSITKEELERI 274 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGD 195 +D E +W + R L++ + C GL IS+ +L +NI+ ++ L I+G+ Sbjct: 275 ID-------LEIEWENYRIVRDLFV-FSCFSGLAISDVRNLREENIVLEEGELCIKGRRI 326 Query: 196 KIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL----NPGVFQRYIR 248 K + V +LP AI+E Y RG R + + + Sbjct: 327 KTKTPYRVQVLPPAW-AIMERY----------------RGKRAGFVFDVPTTDIILNGMH 369 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 ++R +G+ T H RH+FA+ + LS G + ++ +LGH L TTQ+Y V+S+ Sbjct: 370 YIQRNIGMESPLTFHMARHTFASLITLSAGVPIETVSRMLGHTSLRTTQVYAAVSSERIH 429 Query: 308 DWMMEIYDQTHPSITQK 324 M I + + T K Sbjct: 430 RDMQAIQQRIQDTFTLK 446 >gi|229048170|ref|ZP_04193739.1| Phage integrase [Bacillus cereus AH676] gi|228723157|gb|EEL74533.1| Phage integrase [Bacillus cereus AH676] Length = 360 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 14/158 (8%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDD---QSTLRIQ------GKGDKIRIVPLLP 204 AR+ L GLRI+E + L ++ D + ++ G G K R VP+L Sbjct: 170 ARDYVFFKTLSLSGLRINELVMLDINDLRFDLGHNGKIHVRYGKGSRGTGHKPRWVPMLS 229 Query: 205 SVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-- 260 + K +LE+Y ++ P N + LF G+ + + + + ++ +G+P S Sbjct: 230 GLDK-LLEWYLEEILPGLKNNQVNAALFLSEAGERVGRDTMRSNLIRRQKEIGIPKSEQF 288 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 +AH LRH+FAT+ + G D+ ++ +LGH +STT Y Sbjct: 289 SAHQLRHAFATNYVELGVDILTMSKLLGHSNVSTTAGY 326 >gi|226349698|ref|YP_002776812.1| putative tyrosine recombinase [Rhodococcus opacus B4] gi|226245613|dbj|BAH55960.1| putative tyrosine recombinase [Rhodococcus opacus B4] Length = 390 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 40/72 (55%) Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288 LFR G P+ PG + R GL + H LRH FA+++L GG + +Q +LG Sbjct: 292 LFRAPIGAPMTPGAVNALLAAASRRAGLDRAVHPHALRHGFASNVLDAGGSIDEVQELLG 351 Query: 289 HFRLSTTQIYTN 300 H +S++Q+Y + Sbjct: 352 HASISSSQVYVH 363 >gi|91218504|ref|ZP_01255443.1| probable integrase [Psychroflexus torquis ATCC 700755] gi|91183335|gb|EAS69739.1| probable integrase [Psychroflexus torquis ATCC 700755] Length = 137 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/46 (58%), Positives = 32/46 (69%) Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + T H LRHSFATHLL G DLR IQ +LGH TT+IYT+V + Sbjct: 81 IPVTPHMLRHSFATHLLEAGVDLRQIQVLLGHQSTKTTEIYTHVAT 126 >gi|259649734|dbj|BAI41896.1| site-specific tyrosine recombinase [Lactobacillus rhamnosus GG] Length = 358 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 66/319 (20%), Positives = 131/319 (41%), Gaps = 56/319 (17%) Query: 54 TEEKITIQTIRQLSYTEIRAFIS--------KRRTQKIGDRSLKRSLSGIKSFLKYLKKR 105 + + + ++T+ +LS + +AF++ +++ RS+ L GIK+ ++L + Sbjct: 50 SPQNVPLKTLERLSLRDAQAFVAYLLERPSKTHPNKRMTRRSVALRLVGIKALYRFLTEE 109 Query: 106 KITTES-------NILNMRNLKKSNSLPRALNEK-QALTLVDNVLLHTSHETKWID---- 153 N+ N LK N K Q + VD + +W+D Sbjct: 110 SEPNADGEPYFYRNVWNKVKLKTHAETTTYRNHKLQEMLFVDG---EDARFLQWLDRQYA 166 Query: 154 ---------------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG---D 195 RN AI+ LL+G G+R+SE +++ +++ D+ T+++ KG D Sbjct: 167 QQLPSKPRAYFEATKERNLAIIALLFGSGVRVSELVNMNLEDLNMDRHTVQVVRKGNFQD 226 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-------PGVFQRYIR 248 ++ + A L+ + PLF G+ +N F+RY Sbjct: 227 RVNFADWIDPYLTAYLK--SQTAMIGHQKPTSPLFVTQIGQTVNRIRQNTIEAFFKRYTT 284 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 R +T H RH+ T++ + D++ + LG S T +Y N++ K+G Sbjct: 285 AYGR------PSTPHKARHTLGTNIYTVTKDVQQVADQLGQTTTSATDLYINLSDKSGKA 338 Query: 309 WMMEIYDQTHPSITQKDKK 327 + E+ + ++ Q ++ Sbjct: 339 ALREVSETAAKAVDQHPQQ 357 >gi|199599257|ref|ZP_03212658.1| site-specific tyrosine recombinase XerS [Lactobacillus rhamnosus HN001] gi|258508420|ref|YP_003171171.1| site-specific tyrosine recombinase XerS [Lactobacillus rhamnosus GG] gi|199589869|gb|EDY97974.1| site-specific tyrosine recombinase XerS [Lactobacillus rhamnosus HN001] gi|257148347|emb|CAR87320.1| Tyrosine recombinase xerC [Lactobacillus rhamnosus GG] Length = 370 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 66/319 (20%), Positives = 131/319 (41%), Gaps = 56/319 (17%) Query: 54 TEEKITIQTIRQLSYTEIRAFIS--------KRRTQKIGDRSLKRSLSGIKSFLKYLKKR 105 + + + ++T+ +LS + +AF++ +++ RS+ L GIK+ ++L + Sbjct: 62 SPQNVPLKTLERLSLRDAQAFVAYLLERPSKTHPNKRMTRRSVALRLVGIKALYRFLTEE 121 Query: 106 KITTES-------NILNMRNLKKSNSLPRALNEK-QALTLVDNVLLHTSHETKWID---- 153 N+ N LK N K Q + VD + +W+D Sbjct: 122 SEPNADGEPYFYRNVWNKVKLKTHAETTTYRNHKLQEMLFVDG---EDARFLQWLDRQYA 178 Query: 154 ---------------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG---D 195 RN AI+ LL+G G+R+SE +++ +++ D+ T+++ KG D Sbjct: 179 QQLPSKPRAYFEATKERNLAIIALLFGSGVRVSELVNMNLEDLNMDRHTVQVVRKGNFQD 238 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-------PGVFQRYIR 248 ++ + A L+ + PLF G+ +N F+RY Sbjct: 239 RVNFADWIDPYLTAYLK--SQTAMIGHQKPTSPLFVTQIGQTVNRIRQNTIEAFFKRYTT 296 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 R +T H RH+ T++ + D++ + LG S T +Y N++ K+G Sbjct: 297 AYGR------PSTPHKARHTLGTNIYTVTKDVQQVADQLGQTTTSATDLYINLSDKSGKA 350 Query: 309 WMMEIYDQTHPSITQKDKK 327 + E+ + ++ Q ++ Sbjct: 351 ALREVSETAAKAVDQHPQQ 369 >gi|310829015|ref|YP_003961372.1| integrase family protein [Eubacterium limosum KIST612] gi|308740749|gb|ADO38409.1| integrase family protein [Eubacterium limosum KIST612] Length = 408 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 54/225 (24%), Positives = 103/225 (45%), Gaps = 37/225 (16%) Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172 IL R +KK P L+ K+A L +L S + K +++A+L+ L G+R+ E Sbjct: 194 ILPKRPIKK----PVFLDVKEAQKL--ETVLKNSRDHK----KSTAVLFAL-KTGIRLGE 242 Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKI-----------------------RIVPLLPSVRKA 209 +L +++ D+ ++I+ ++ R +P+ P + + Sbjct: 243 LAALRWKDVDFDEQVIQIRDSVQRVKNSEKSGMKTKMVFEGTKSYSSNRTIPMNPEIHEL 302 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 + +YY+ N + + +F + ++P V+Q Y R++ + G+ H LRH+F Sbjct: 303 LYQYYETMKHRENFS-ETFVFTNRKNSFIDPRVYQLYFRRILKKAGIR-HVNFHALRHTF 360 Query: 270 ATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDWMMEI 313 ATH S + + ILGH + T Q+Y +V S M+++ Sbjct: 361 ATHAASKNMQISVLSRILGHSNVGLTLQLYVHVLSGQDQQEMLKL 405 >gi|296840911|ref|ZP_06899430.1| tyrosine recombinase XerD [Neisseria polysaccharea ATCC 43768] gi|296839548|gb|EFH23486.1| tyrosine recombinase XerD [Neisseria polysaccharea ATCC 43768] Length = 72 Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 25/41 (60%), Positives = 34/41 (82%) Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + H+LRH+FATHL+ +G DLR +Q +LGH L+TTQIYT+V Sbjct: 16 SPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHV 56 >gi|161525451|ref|YP_001580463.1| integrase domain-containing protein [Burkholderia multivorans ATCC 17616] gi|160342880|gb|ABX15966.1| integrase domain protein SAM domain protein [Burkholderia multivorans ATCC 17616] Length = 289 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/220 (27%), Positives = 107/220 (48%), Gaps = 19/220 (8%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 ++L ER S+ T ++Y + + F A + K + T+ Q+ + I F+ ++ Sbjct: 14 EHLPAERNASQHTCEAYAYSFQLLVEFAAGRLKCKPSQLTLDQIDASMIMTFLEHIEAKR 73 Query: 83 IGDRSLKRS--LSGIKSFLKYLKKR--KITTESNILNMRNLKKSNS-LPRALNEKQALTL 137 G+ + R+ L+ IKSF +YL+ R +S ++ +KK++ L L ++ L Sbjct: 74 -GNCARTRNARLAAIKSFFRYLEYRLPAYLDQSRQIHAIPMKKTDQMLIDYLTREELKAL 132 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT-PQNIMDDQSTLRIQGKGDK 196 +D+ H+ R+ A+L+L Y CGLR++E +SL Q +T+ I GKG + Sbjct: 133 LDSPDPHSQSGI-----RDRAMLHLAYACGLRVAELVSLRLDQFDPRTPATIHIVGKGRR 187 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 R++PL E DL + L++Q P G+ K Sbjct: 188 ERVLPLWK-------EADDLFFGETFLHVQSPCHGGLDSK 220 >gi|30908728|gb|AAP37596.1| IntI [uncultured bacterium] Length = 160 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/59 (49%), Positives = 39/59 (66%), Gaps = 4/59 (6%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 F+R + Q G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+ Sbjct: 106 AFKRAVEQA----GITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 160 >gi|331085647|ref|ZP_08334730.1| hypothetical protein HMPREF0987_01033 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406570|gb|EGG86075.1| hypothetical protein HMPREF0987_01033 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 322 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 72/285 (25%), Positives = 118/285 (41%), Gaps = 40/285 (14%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQT-IRQLSYTEIRAFISKRRTQKIGDRS- 87 G S+ T+Q Y + L IQT +R++S EIR ++ QKI D S Sbjct: 59 GCSERTIQYYSVTVDKMLQ----------KIQTPVRKISTEEIRKYLVD--YQKINDCSK 106 Query: 88 --LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 + I SF +L++ +S + + +K + ++++ L D+ Sbjct: 107 VTVDNVRRNISSFFSWLEEEDYILKSPMRRIHKIKTKQPVKEIISDEAIEMLRDHCQC-- 164 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 R+ A++ LLY G+R+ E ++L ++ + + GKGDK R V Sbjct: 165 --------PRDLAMIDLLYSTGIRVGELVNLNISDVDFEARECVVFGKGDKERRVYFDAK 216 Query: 206 VRKAILEYY----DLCPFDLNLNIQLPLFR-GIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 + +L Y D P L + + P R I G + IR L R L + Sbjct: 217 AKLHLLNYLSERKDNNPA-LFVTLDAPYDRLKISGVEIR-------IRTLGRKLNME-KI 267 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 H R + AT + G + +Q +LGH ++ TT Y VN N Sbjct: 268 HPHKFRRTMATRAIDKGMPIEQVQKLLGHSQIDTTMQYAIVNQTN 312 >gi|163855807|ref|YP_001630105.1| putative integrase/recombinase [Bordetella petrii DSM 12804] gi|163259535|emb|CAP41836.1| putative integrase/recombinase [Bordetella petrii] Length = 419 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 67/284 (23%), Positives = 124/284 (43%), Gaps = 29/284 (10%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87 E+GL + ++ +Y R F +LA + I++ + TE FI+ R + + Sbjct: 138 EKGLRQTSIHNYTFTLRPFDSYLA---QAGISLDKLTPACITE---FINDR-AKTLHKSG 190 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNM--RNLKKSNSLPRALNEKQALTLVDNVLLHT 145 + + ++ FL+YL + I + ++ + + S+PRA+ L+ ++ + Sbjct: 191 MLNTAGALRVFLRYLHREGIIANDLVRSVPRGRVYRQASIPRAIGWADVERLLASIDRRS 250 Query: 146 SHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 + R+ AIL LL GLR E AL L + Q + ++ G R PL Sbjct: 251 D-----LGKRDYAILTLLTSYGLRAREIVALCLDDLDWAHGQIGIPMRKGGHSTRY-PLS 304 Query: 204 PSVRKAILEYYDLCPFDLN-----LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +V +AI+ Y + D++ L ++ P P+N + R +G+ + Sbjct: 305 AAVGEAIIAYLHVRRTDIDDRRIFLTVRSPY------TPMNHWTVSSMVAGHLRSIGIQV 358 Query: 259 S-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + +HTLRHS HL+ + I +GH ++T +Y V Sbjct: 359 ARAGSHTLRHSCVQHLVEADLPFKVIGDYVGHRHPASTLVYGKV 402 >gi|227355496|ref|ZP_03839891.1| integrase/recombinase [Proteus mirabilis ATCC 29906] gi|227164292|gb|EEI49181.1| integrase/recombinase [Proteus mirabilis ATCC 29906] Length = 330 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 3/146 (2%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R++AIL +L GCGLR SE ++L ++I ++GKG+K RI + + + + Sbjct: 169 RDAAILSVLLGCGLRRSEIVALNYEHIQFRDQAFIVRGKGNKERISYMPEDTWERVQLWI 228 Query: 215 DLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 D D L ++ F + + + YI + R+ H LR +FA+ Sbjct: 229 DEIRGSQDGALFTRIRRFDDVTDERITDQAIY-YILETRQQESGIDKFAPHDLRRTFASA 287 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIY 298 +L NG D+ +++ +GH + TTQ Y Sbjct: 288 MLDNGEDIVTVKDAMGHASIMTTQRY 313 >gi|168218110|ref|ZP_02643735.1| DNA integration/recombination protein [Clostridium perfringens NCTC 8239] gi|182379864|gb|EDT77343.1| DNA integration/recombination protein [Clostridium perfringens NCTC 8239] Length = 338 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/220 (27%), Positives = 100/220 (45%), Gaps = 13/220 (5%) Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD- 139 Q I +L + IK F K+ K ++ ++ +K S N KQ +T+ + Sbjct: 99 QPISLCTLDSYVGTIKMFFKWCVDNKYLKQNPTNKIKRIKFSR------NPKQEVTIDEF 152 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDK 196 N LL T + + R+ I+ LL G+RI E L L ++ T+ I KG K Sbjct: 153 NKLLQNLDLTLFSEYRDYVIIQLLLDTGMRIGECLELKEDDVDIRNKTIFISAEIAKGRK 212 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 R V ++ + LE + L D + + LF RG F++++R + + Sbjct: 213 DRYV-FFSNIMQRTLEKW-LIYKDRYVGSEY-LFVTNRGSKYQIHSFEKHMRNYLKRARI 269 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 T HTLR++FA L +GGD+ ++ +LGH + T+ Sbjct: 270 DKKITPHTLRNNFAKRFLMSGGDIYTLSKLLGHSSVRVTE 309 >gi|288927761|ref|ZP_06421608.1| integrase [Prevotella sp. oral taxon 317 str. F0108] gi|288330595|gb|EFC69179.1| integrase [Prevotella sp. oral taxon 317 str. F0108] Length = 410 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 16/148 (10%) Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 ++ C GL + +LTP+NI +DD+ + + + + LL + K I+E Y Sbjct: 249 FVFSCFTGLAYIDVANLTPENIVTLDDKQWIMTKRQKTSVATNVLLLDIPKNIIEKYSGK 308 Query: 218 PF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 + D L P+ R Y++++ G+ T H RH+FAT LS Sbjct: 309 TYRDGKL---FPMLTNQRTNS--------YLKEIADICGIKKDLTFHMARHTFATMSLSK 357 Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSK 304 G + S+ +LGH + TTQIY + +K Sbjct: 358 GVSMESVSKMLGHTNIKTTQIYARITNK 385 >gi|329961823|ref|ZP_08299837.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] gi|328531263|gb|EGF58107.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] Length = 394 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/150 (35%), Positives = 73/150 (48%), Gaps = 20/150 (13%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI---VPLLPSVRK---AIL 211 A L+ Y G+R S+ +SLTP NI++ + K K +PL K IL Sbjct: 237 AFLFCCYA-GMRYSDFISLTPDNIVEIHKETWLIYKSVKTNTEVRLPLYLLFEKKGLVIL 295 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 E Y NIQ F +R N V + I L R GL + HT RH+ AT Sbjct: 296 EKYQD-------NIQD--FFHLRD---NSNVNKDLI-ILARLAGLSKKISFHTARHTNAT 342 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 L+ NG ++ ++Q +LGH + TTQ+YTNV Sbjct: 343 LLIYNGVNITTVQKLLGHKSVKTTQVYTNV 372 >gi|223369806|gb|ACM88772.1| integrase [uncultured bacterium] Length = 161 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/41 (60%), Positives = 31/41 (75%) Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 T HT RHSFATHLL G D+R++Q +LGH + TTQIYT+ Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTH 161 >gi|301308115|ref|ZP_07214069.1| integrase [Bacteroides sp. 20_3] gi|300833585|gb|EFK64201.1| integrase [Bacteroides sp. 20_3] Length = 411 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 75/333 (22%), Positives = 143/333 (42%), Gaps = 41/333 (12%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 +GN ++ +LL +R N + + T+ +Y R F+ TE K++ Sbjct: 100 FQGNAGMQMTLLKLL-DRHNEEMKARVGVDRAPTTMSTYVYTRRTLAEFIK--TEFKVSD 156 Query: 61 QTIRQLSYTEIRAF----ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116 QL+ IR + + K+ K+ +++ LS +K + K + + + + Sbjct: 157 LAFGQLNEQFIRDYQDFCLEKK---KLAMETVRHYLSILKKICRIAYKEGHSEKYHFCHF 213 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL---YLLYGC--GLRIS 171 + K+ + P+AL+ + L D + + R S ++ L+ C G + Sbjct: 214 KLPKQKETTPKALSRENFEKLRD---------LEIPEKRRSHVITRDLFLFACYTGTAYA 264 Query: 172 EALSLTPQNIM-DDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227 +A+S+T +N+ DD+ +L ++ K D + V LLP I +Y D + ++ Sbjct: 265 DAVSITRENLFQDDEGSLWLKYRRKKTDYLGRVKLLPEALALIGKYRD--------DTRI 316 Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 LF P + + ++ LR GL H RHSF T L+ G + SI ++ Sbjct: 317 TLF-----PPQDYHTLRANMKSLRLMAGLSQDLVYHMARHSFGTLTLTAGIPIESIARMM 371 Query: 288 GHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 GH + +TQ+Y V + M + ++ P+ Sbjct: 372 GHTNIDSTQVYAQVTDRKISSDMDRLMERRKPA 404 >gi|300772355|ref|ZP_07082225.1| integrase [Sphingobacterium spiritivorum ATCC 33861] gi|300760658|gb|EFK57484.1| integrase [Sphingobacterium spiritivorum ATCC 33861] Length = 413 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 80/166 (48%), Gaps = 15/166 (9%) Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQ-GKGDK 196 VLL+ S + + + + ++ Y GL + +LTP+NI +D + L + K D Sbjct: 238 VLLNKSFSIERLQSVSDMFIFSCY-TGLAYIDIFNLTPENISKGIDGKDWLTTKRQKTDT 296 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 VPLLP + +Y + N I F I + +N Y++++ G+ Sbjct: 297 TVRVPLLPEASDLLKKYRGHPVAEANGTI----FPVISNQRMNG-----YLKEIAEICGI 347 Query: 257 PLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T H RH+FAT + LSNG + S+ +LGH + TTQIY V Sbjct: 348 NKNLTFHLARHTFATTVTLSNGVPIESVSKMLGHTSIRTTQIYAKV 393 >gi|41406204|ref|NP_959040.1| hypothetical protein MAP0106c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394552|gb|AAS02423.1| hypothetical protein MAP_0106c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 343 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 78/178 (43%), Gaps = 41/178 (23%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI--------------QGKGDKIRIV 200 R++ + ++YG GLRISE L ++ + + +G K R V Sbjct: 158 RDTTMFKVMYGWGLRISELCRLDLADMYRNPHAPELGQCGFLHVRYGKASRGSPPKRRTV 217 Query: 201 P-LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-------------PGVFQRY 246 P L+P +A+L+Y + NI+ PL+ + + L G F Sbjct: 218 PTLMPWAAEALLDYVN--------NIR-PLYEPGQKQALWLTERRSQVKVRTLTGTFD-- 266 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 +R +GL T H RHSF +H+ +G D R +Q I GH STT IYT+V + Sbjct: 267 --DIRDEVGLDRKLTPHCFRHSFISHMTEDGVDPRFLQEISGHRFASTTGIYTHVTGE 322 >gi|304382547|ref|ZP_07365042.1| integrase [Prevotella marshii DSM 16973] gi|304336378|gb|EFM02619.1| integrase [Prevotella marshii DSM 16973] Length = 406 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 74/297 (24%), Positives = 135/297 (45%), Gaps = 49/297 (16%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 + + I+R L L++Y+ L L Y ++K + I LS + +AFI Sbjct: 123 ERIGIDRALKTFKLRTYQ------LSLLREYVQKKHKVSDI-PLSQLD-KAFIEGFEYYL 174 Query: 83 IGDRSLKRS-----LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 DR LKRS +S +++ ++ K+ + L + ++ PR++ +++ + Sbjct: 175 TIDRRLKRSSISSTVSTLQTIVRMAVKKGVLDFYPFLGY-SYERPKGEPRSITQEELEHI 233 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGD 195 +D E KW + R L++ + C GL IS+ +L +NI+ ++ L I+G+ Sbjct: 234 ID-------LEIKWENYRIVRDLFV-FSCFSGLAISDVRNLREENIVLEEGELCIKGRRM 285 Query: 196 KIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL----NPGVFQRYIR 248 K + V +LP + + Y RGIR + V + Sbjct: 286 KTKTPYRVQVLPPAQTIMNRY-----------------RGIRAGFVFDVPTTDVILNGMH 328 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 ++R +G+ T H RH+FA+ + LS G + ++ +LGH L TTQ+Y V+S+ Sbjct: 329 YIQRNIGMETPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSE 385 >gi|253688998|ref|YP_003018188.1| integrase family protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755576|gb|ACT13652.1| integrase family protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 335 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 23/145 (15%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 I+ L G R SEA L I+ ++ T + KG+K R VP+ +R Sbjct: 193 IVRLCLATGARWSEAQDLKQSQILPNRVTF-TKTKGNKNRTVPISEKMRSL--------- 242 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNG 277 LP RG P ++ + ++R + LP H LRHSFA+H + NG Sbjct: 243 --------LPKKRGALFTP----AYESFKYAIKRAGIELPSGQLTHVLRHSFASHFMMNG 290 Query: 278 GDLRSIQSILGHFRLSTTQIYTNVN 302 G++ +Q ILGH ++ T Y + + Sbjct: 291 GNILVLQQILGHSTITMTMRYAHFS 315 >gi|332884572|gb|EGK04830.1| hypothetical protein HMPREF9456_03300 [Dysgonomonas mossii DSM 22836] Length = 366 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 67/279 (24%), Positives = 118/279 (42%), Gaps = 31/279 (11%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 S++ L++ E +T + + L + I+T L+YT I AF R +KIG+ S+ ++ Sbjct: 111 SEMKLRNMEYNTLKAHVTLVNKLNDFKNIKTFADLTYTNIVAFDKYMRDKKIGNISINKN 170 Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 S ++K +++ +S K N+ P L + V+ + + K Sbjct: 171 HSLFNMYIKIAINKELIQKSPYDLFTPPKGKNNDPVFL----TIEEVERIKNLSGLNEKL 226 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI 210 R+ + G ++ S I+++Q +R + K D+ I+ LP +K Sbjct: 227 ERTRDLFVFQCYTGMAYVDMQSFSKNDIQILNEQEIIRSSRTKTDESFILLFLPDAKKIA 286 Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-----LSTTAHTL 265 +Y N LP Q+Y L+ + P T+HT Sbjct: 287 EKY----------NYSLPKISN-----------QKYNDYLKLLIAHPEVNINKKVTSHTA 325 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 RH+FAT+LL+ G L ++ LGH + TQ+Y + SK Sbjct: 326 RHTFATYLLNKGISLETVSKTLGHSNIKQTQLYARILSK 364 >gi|254774453|ref|ZP_05215969.1| phage integrase family protein [Mycobacterium avium subsp. avium ATCC 25291] gi|254777680|ref|ZP_05219196.1| phage integrase family protein [Mycobacterium avium subsp. avium ATCC 25291] Length = 357 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/211 (25%), Positives = 92/211 (43%), Gaps = 26/211 (12%) Query: 93 SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152 G K FL ++ K + I LK LPR L+ + ++D Sbjct: 132 GGWKPFLHHISKGAPRSRRVI----ALKAPKKLPRVLSPDEVQAILDGCGR--------- 178 Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLR-------IQGKGDKIRIVPLL 203 R+ + +LY G+RI EAL L +I + + T+R + K +R +P+ Sbjct: 179 -LRDRLLFAVLYDTGMRIGEALGLRHNDIAAAEHEVTVRRRDNANGARAKSQTVRTIPVS 237 Query: 204 PSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 ++ + +Y DL+ + + + L+ +G PL +R+LRR G+ Sbjct: 238 SALIRLFADYLHSEYGDLDSDYVFVNLWGRPQGHPLTYAAVYDLVRRLRRRTGIDFDP-- 295 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 H LRH+ AT LL +G + + +LGH ++ Sbjct: 296 HWLRHTAATRLLRDGVSIEVVAHLLGHAHVA 326 >gi|189463399|ref|ZP_03012184.1| hypothetical protein BACCOP_04118 [Bacteroides coprocola DSM 17136] gi|189429828|gb|EDU98812.1| hypothetical protein BACCOP_04118 [Bacteroides coprocola DSM 17136] Length = 385 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 65/257 (25%), Positives = 112/257 (43%), Gaps = 45/257 (17%) Query: 62 TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFL-KYLKKRKITTESNILNMRNLK 120 T +Q+ Y + +F + +K+G ++ + L I++ + + +++ I E + +K Sbjct: 143 TFKQMDYKLLLSFEQFMKNKKLGINTIAKHLRHIRTIINEAVRQGIIAKEDSPFTEYKIK 202 Query: 121 KSNS-----LPRALNEKQALTLV--DNVLLHTSHETKWIDARNSAILYLLYGC--GLRIS 171 + S LP L++ + + L N L HT +DA L+ C GLR S Sbjct: 203 TTESHHTYLLPEELDKLEHINLSRKKNTLRHT------LDA-------FLFCCYTGLRYS 249 Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-------SVRKAILEYYDLCPFDLNLN 224 + +S+ QN++ L + K K V LP + + Y D+ F Sbjct: 250 DFISMKKQNLIQTDKELWLVFKSQKTGTVTQLPLGYLFQGKAIRILYHYPDIEEF----- 304 Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284 KP N V + IR + + G+ + HT RH+ AT L+ G L ++Q Sbjct: 305 --------FHIKP-NASVNKELIR-IGKLAGITKHFSFHTARHTNATLLIYKGVQLSTVQ 354 Query: 285 SILGHFRLSTTQIYTNV 301 +LGH + TTQ+Y V Sbjct: 355 KLLGHRNIKTTQVYGEV 371 >gi|299536693|ref|ZP_07050004.1| transposition regulatory protein TnpA [Lysinibacillus fusiformis ZC1] gi|298727873|gb|EFI68437.1| transposition regulatory protein TnpA [Lysinibacillus fusiformis ZC1] Length = 373 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/224 (27%), Positives = 103/224 (45%), Gaps = 43/224 (19%) Query: 93 SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152 S KSFL ++ K K +I N+ LK+ L ++Q V +L T+ Sbjct: 143 SHYKSFLHHVNKDK----PSIRNILKLKEPRRKVDTLTKEQ----VQQILEATT------ 188 Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV--------PLLP 204 + R+ ++ LL+ GLRI EAL+L ++ + D GKG +IR+V +L Sbjct: 189 NIRDRFLIQLLFETGLRIGEALALFMEDFIFDH------GKGHRIRLVDRGELENGAMLK 242 Query: 205 S------VRKAILEYYD------LCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLR 251 + V +++++ YD L +L+ N RG GKP+ + ++L+ Sbjct: 243 TGEREIYVSQSLMDLYDDYLYEVLDELELDTNFVFVKLRGKDVGKPMEYWNVESLFKRLK 302 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 + G+ L H RH+ AT D++ +Q LGH ++ TT Sbjct: 303 KKTGINLH--PHLFRHTHATIYYQKTKDIKQVQERLGHSQIQTT 344 >gi|228925131|ref|ZP_04088241.1| Phage integrase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228834470|gb|EEM79999.1| Phage integrase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 360 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 79/295 (26%), Positives = 127/295 (43%), Gaps = 57/295 (19%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 S+ T Q Y D FL ++ K TI TI++LS+ E+ + + ++K +L++ Sbjct: 75 SERTKQQYLHDLSHFLRYI------KETIGTIQELSHNEMEIYFYEL-SKKYASTTLRKK 127 Query: 92 LSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVD-----NVLLH 144 + ++ FLKY+ ++ S+ L ++KK + R L ++ ++D N ++ Sbjct: 128 KTVVQQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLYPEEVTQILDELKKSNYFVY 187 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIV 200 T+ +LL GLRI E + +++ S LR+ GKG+KIR V Sbjct: 188 TA-------------FFLLTTTGLRIEEIATAKWADLVFHSSLNAYLLRVVGKGNKIREV 234 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQ-----LPLFRG--IRGKPLNPGV----------F 243 + AI L L+ LP G R L+ V F Sbjct: 235 RIFEDTLDAICHVRRLRKQTTELDASSSSAFLPKADGSNYRADYLSSLVAKKIEETNLAF 294 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 RY RQ R T HT RH A +L+ G +L+ I+ LGH + TT+ Y Sbjct: 295 LRY-RQDR--------ITPHTCRHFMANYLMEKGVELKKIRDYLGHESIMTTERY 340 >gi|223369808|gb|ACM88773.1| integrase [uncultured bacterium] Length = 161 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/41 (60%), Positives = 31/41 (75%) Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 T HT RHSFATHLL G D+R++Q +LGH + TTQIYT+ Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTH 161 >gi|223369790|gb|ACM88764.1| integrase [uncultured bacterium] Length = 163 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/41 (60%), Positives = 31/41 (75%) Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T HT RHSF THLL G D+R++Q +LGH + TTQIYT+V Sbjct: 122 TCHTFRHSFTTHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|330824742|ref|YP_004388045.1| integrase family protein [Alicycliphilus denitrificans K601] gi|329310114|gb|AEB84529.1| integrase family protein [Alicycliphilus denitrificans K601] Length = 419 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 67/284 (23%), Positives = 124/284 (43%), Gaps = 29/284 (10%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87 E+GL + ++ +Y R F +LA + I++ + TE FI+ R + + Sbjct: 138 EKGLRQTSIHNYTFTLRPFDSYLA---QAGISLDKLTPACITE---FINDR-AKTLHKSG 190 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRN--LKKSNSLPRALNEKQALTLVDNVLLHT 145 + + ++ FL+YL + I + ++ + + S+PRA+ L+ ++ + Sbjct: 191 MLNTAEALRVFLRYLHREGIIANDLVRSVPRGRVYRQASIPRAIGWADVERLLASIDRRS 250 Query: 146 SHETKWIDARNSAILYLLYGCGLRISE--ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 + R+ AIL LL GLR E AL L + Q + ++ G R PL Sbjct: 251 D-----LGKRDYAILTLLTSYGLRAREIVALCLDDLDWAHGQIGIPMRKGGHSTRY-PLS 304 Query: 204 PSVRKAILEYYDLCPFDLN-----LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +V +AI+ Y + D++ L ++ P P+N + R +G+ + Sbjct: 305 AAVGEAIIAYLHVRRTDIDDRRIFLTVRSPY------TPMNHWTVSSMVAGHLRSIGIQV 358 Query: 259 S-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + +HTLRHS HL+ + I +GH ++T +Y V Sbjct: 359 ARAGSHTLRHSCVQHLVEADLPFKVIGDYVGHRHPASTLVYGKV 402 >gi|227523734|ref|ZP_03953783.1| integrase [Lactobacillus hilgardii ATCC 8290] gi|227089049|gb|EEI24361.1| integrase [Lactobacillus hilgardii ATCC 8290] Length = 305 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 77/290 (26%), Positives = 136/290 (46%), Gaps = 34/290 (11%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI---RAFI 75 Q+W+ NL + + ++T + YE RQ ++ LA + + + +L+Y ++ A Sbjct: 12 QDWM-NLYKKDAVREVTYRKYEMTYRQ-IVSLA----PDLRMCELSRLTYQKLLNDYAKT 65 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 +R+T R +K SL I + + + +R T ++ I + K + LN+ + Sbjct: 66 HERQTVMDFHRHIKSSL--IDALEEGILERDPTRKAII---KGKKPGPHKTKFLNQHEVQ 120 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 ++D++ L W + L+ GLR SEAL++TP + + TL I D Sbjct: 121 LMLDSLSLDAG--VNW-----DYFILLITKTGLRFSEALAITPNDFDFARQTLNINKTWD 173 Query: 196 -KIRIVPLLP-----SVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRY 246 K R P S+RK L++ + F L+ P+F +R K N + Y Sbjct: 174 YKSRQAGFAPTKNFSSMRKIQLDWQTVIQFSQLTKELSEDKPIF--VRSKVYNDTI-NHY 230 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + +L + G+P+ + H LRH+ A+ LL G + S+ LGH ++TTQ Sbjct: 231 LERLCKKSGIPI-ISVHGLRHTHASLLLYAGVSIASVARRLGHSNMNTTQ 279 >gi|215408006|emb|CAS02330.1| integron integrase [uncultured bacterium] Length = 157 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/59 (49%), Positives = 39/59 (66%), Gaps = 4/59 (6%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 F+R + Q G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT IYT+ Sbjct: 103 AFKRAVEQA----GITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 157 >gi|223369794|gb|ACM88766.1| integrase [uncultured bacterium] Length = 163 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/42 (59%), Positives = 31/42 (73%) Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T H RHSFATHLL G D+R++Q +LGH + TTQIYT+V Sbjct: 121 VTCHIFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|221196341|ref|ZP_03569388.1| phage integrase [Burkholderia multivorans CGD2M] gi|221203015|ref|ZP_03576034.1| phage integrase [Burkholderia multivorans CGD2] gi|221176949|gb|EEE09377.1| phage integrase [Burkholderia multivorans CGD2] gi|221182895|gb|EEE15295.1| phage integrase [Burkholderia multivorans CGD2M] Length = 421 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 79/192 (41%), Gaps = 34/192 (17%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM-------DDQSTLRIQGKGDKIRIVPLLPSVR 207 R + LLY GLRI+EA T D+ L + GKG + R+VP + Sbjct: 232 RARWVFTLLYLGGLRITEAAETTMGRFFCRRDASGRDRWWLDVTGKGGRRRLVPATDELM 291 Query: 208 KAILEY---YDLCPF---DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST- 260 + Y + L P D + + LP G +PL R ++Q+ R+ L T Sbjct: 292 TELARYRRAHGLAPLPVADEDTPLVLPF--GQARRPLTRAALHRIVKQVFRHAADRLRTQ 349 Query: 261 --------------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 +AH LRHS +H+ DLR ++ LGH L+TT Y + + Sbjct: 350 GDAGAEQARVLEQASAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHADD--- 406 Query: 307 GDWMMEIYDQTH 318 DW ++ H Sbjct: 407 -DWRHRETEEKH 417 >gi|196048146|ref|ZP_03115323.1| phage integrase family protein [Bacillus cereus 03BB108] gi|196020883|gb|EDX59613.1| phage integrase family protein [Bacillus cereus 03BB108] Length = 348 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 78/290 (26%), Positives = 126/290 (43%), Gaps = 47/290 (16%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 S+ T Q Y D FL ++ K TI TI++LS+ ++ + + + K +L+R Sbjct: 62 SERTKQQYLHDLSHFLRYI------KETIGTIQKLSHNDMEIYFYEL-SNKYAATTLRRK 114 Query: 92 LSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 + ++ FLKY+ ++ S+ L ++KK + R L ++ ++D E Sbjct: 115 KTVVQQFLKYVYDNNGLSDNFSSRLKKVSIKKEELVNRDLYPEEVTQILD--------EL 166 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIVPLLPS 205 K + I +LL GLRI E + +++ S LR+ GKG+K R V + Sbjct: 167 KKSNYFVYTIFFLLTTTGLRIEEIATAKWADLVFHSSLNAYLLRVVGKGNKSREVRIFED 226 Query: 206 VRKAILEYYDLCPFDLNLNIQ-----LPLFRGI--RGKPLNPGV----------FQRYIR 248 A+ L + L++ LP G R L+ V F RY R Sbjct: 227 TLYALYHVRSLRKQTIELDVSNTSAFLPKADGTNYRADYLSSLVAKKIEETNLDFLRY-R 285 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 Q R T HT RH A +L+ G +L+ I+ LGH + TT+ Y Sbjct: 286 QDR--------ITPHTCRHFMANYLMEKGIELKKIRDYLGHESIMTTERY 327 >gi|157149591|ref|YP_001456672.1| phage integrase family site specific recombinase [Campylobacter concisus 13826] gi|112800190|gb|EAT97534.1| site-specific recombinase, phage integrase family [Campylobacter concisus 13826] Length = 329 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 60/225 (26%), Positives = 97/225 (43%), Gaps = 23/225 (10%) Query: 92 LSGIKSFLKYLKKR--KITTESNILNMRNL--KKSNSLPRALNEKQ---ALTLVDNVLLH 144 L+ +K F KY+ K+ IL+ + KK N + E + L V+N L+ Sbjct: 100 LTILKIFFKYITNNNDKLIDLEKILDNYKIAKKKVNKFENFMKESERDKILDYVENRLVK 159 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS----TLRIQGKGDKIRIV 200 + R+S ++ L+ GLRISEAL+L + + + I KG + + Sbjct: 160 KPEYRYNKNYRDSLLIKLMLKSGLRISEALNLKFCDFQESDDGEFYDINILAKGGEYQTA 219 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 + S KA F+ L+I LP G KP++ + ++ R G+ Sbjct: 220 YIAKSYIKA--------DFERLLSINLPENYIFTSGCSDKPISRQNVYSLLARIYRKCGI 271 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 H LRHSFA +++ +L IQ L H ++ TT IY + Sbjct: 272 VNKRGCHILRHSFAMNMVEKNTNLGVIQKALRHKKIQTTMIYADA 316 >gi|119714032|ref|YP_919174.1| phage integrase family protein [Nocardioides sp. JS614] gi|119525941|gb|ABL79311.1| phage integrase family protein [Nocardioides sp. JS614] Length = 375 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 81/174 (46%), Gaps = 23/174 (13%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQ------GKGDKIRIVPLLP 204 AR+ L GLRI+E + L + + T L ++ G+G K+RIVP + Sbjct: 169 ARDYLAASLWRRIGLRINETVMLDVGDWHPELGTHGKLHVRHGKGSRGRGAKVRIVPAID 228 Query: 205 SVRKAILEYY--DLCP--FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG----- 255 V A+LE++ D+ P D + PL R P+ + LR +G Sbjct: 229 EV-DALLEWWLTDVRPQFGDDYEDPNAPLLPSERRDPMTGHCTRIGAEALRTGMGEAVGR 287 Query: 256 -LPLST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 LP T + H LRH A+HL G L++IQ +LGH LSTT Y +V S + Sbjct: 288 WLPGWTGRLSPHVLRHYCASHLYEQGMTLKAIQELLGHGWLSTTTQYIHVRSTH 341 >gi|223369802|gb|ACM88770.1| integrase [uncultured bacterium] Length = 163 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/42 (59%), Positives = 31/42 (73%) Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T HT RHSFATHLL G D+R++Q +LGH + TQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKPTQIYTHV 162 >gi|319644101|ref|ZP_07998650.1| hypothetical protein HMPREF9011_04253 [Bacteroides sp. 3_1_40A] gi|317384343|gb|EFV65312.1| hypothetical protein HMPREF9011_04253 [Bacteroides sp. 3_1_40A] Length = 381 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 54/218 (24%), Positives = 96/218 (44%), Gaps = 21/218 (9%) Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 R+L+G + KK K + + ++K S+ + ++ L+D + H +E Sbjct: 168 RALNGALNSAVRKKKMKANPFNELEKSEKIRKPESMRSYMTIEEVQALIDTPMPHEEYEI 227 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR---IVPLLPSV 206 A L+ + CGLRIS+ + L ++ D+ R+ K + +PL P Sbjct: 228 -----VKCAYLFSCF-CGLRISDIIKLKWSDVFVDRGQYRLAVSMKKTKEPIYLPLSPEA 281 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 K + E D N+ LP IR + ++ + G+ + HT R Sbjct: 282 LKWMPERGGKSSED-NV-FDLPSANTIRMQ----------LKPWAKAAGISKRFSYHTSR 329 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 H+FAT +L+ G DL ++ +LGH + TQ+Y + +K Sbjct: 330 HTFATMMLTLGADLYTVSKLLGHADVKMTQVYAKIINK 367 >gi|313114164|ref|ZP_07799716.1| site-specific tyrosine recombinase XerC family protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310623573|gb|EFQ06976.1| site-specific tyrosine recombinase XerC family protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 401 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 79/325 (24%), Positives = 133/325 (40%), Gaps = 76/325 (23%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFL-----------------------AFYTEEK 57 +++ LE+ G S T SY CD R F F+ AF+ Sbjct: 26 YVRYLEVIAGKSANTAFSYYCDLRGFSRFMKRRRGLVPEDSEMKDIDPKGLDTAFWA--S 83 Query: 58 ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN-ILNM 116 +T + I + Y F+++ K S R L+ + F YL + ++ + Sbjct: 84 VTKEDIYEYLY-----FLNRECGNK--KSSTARRLASLHGFYDYLVNQVNRLGADPTAAI 136 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 K+ LP+ L +Q++ L L ++ R+ ++ L CG+R++E + + Sbjct: 137 HPPKQDKVLPKYLTAEQSMEL-----LESTQTQSDFPERDYCMVTLFLNCGMRLAELVGM 191 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 +I + +R+ GKG K R+V L + +A L L+ G R Sbjct: 192 NLDDIDLENRQIRLFGKGHKERMVYLNDACMEA-----------------LRLYLGKRNT 234 Query: 237 -----PLNPGVF----------QRYIRQL----RRYLGLPLSTTAHTLRHSFATHLLSNG 277 P VF R + QL + GL +T H LRH+ AT + G Sbjct: 235 MEGLLPQEKAVFITRRRKERISNRRVEQLVTGAMKAAGLKGFST-HKLRHTAATLMYQTG 293 Query: 278 G-DLRSIQSILGHFRLSTTQIYTNV 301 D+ +++ +LGH +STTQIYT++ Sbjct: 294 NVDILTLKQLLGHSNVSTTQIYTHL 318 >gi|318603813|emb|CBY25311.1| integrase [Yersinia enterocolitica subsp. palearctica Y11] Length = 284 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 57/242 (23%), Positives = 104/242 (42%), Gaps = 30/242 (12%) Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 + + QL+ E+ S+R I ++ R L + L K + + N L+ Sbjct: 54 KAVSQLTKRELMEHRSQRLADGISAATINRDLYRLSGMFSALIKIEEFSGQNPLH----- 108 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 LP + +T +D ++ D R A+L L G R E +LT Sbjct: 109 ---GLPPLAEKNPGMTFLDAEEINRLLAVLSGDERLIALLCL--STGGRWGEVSTLTAAQ 163 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240 +++++ T ++ K K R +P+ + K ++ N LF+ ++ Sbjct: 164 VVNNRVTF-LETKNGKKRTIPISAELEK-----------EVKTNASRKLFK------VDY 205 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 G F +R ++ LP H LRH+FA+H + NGG++ ++Q ILGH + T Y + Sbjct: 206 GKFCETLRMVKP--DLPRGQATHVLRHTFASHFMMNGGNIIALQQILGHANIQQTMAYAH 263 Query: 301 VN 302 ++ Sbjct: 264 LS 265 >gi|227508549|ref|ZP_03938598.1| integrase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191881|gb|EEI71948.1| integrase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 305 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 77/290 (26%), Positives = 136/290 (46%), Gaps = 34/290 (11%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI---RAFI 75 Q+W+ NL + + ++T + YE RQ ++ LA + + + +L+Y ++ A Sbjct: 12 QDWM-NLYKKDAVREVTYRKYEMTYRQ-IVSLA----PDLRMCELSRLTYQKLLNDYAET 65 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 +R+T R +K SL I + + + +R T ++ I + K + LN+ + Sbjct: 66 HERQTVMDFHRHIKSSL--IDALEEDILERDPTRKAII---KGKKPGPHKTKFLNQHEVQ 120 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 ++D++ L W + L+ GLR SEAL++TP + + TL I D Sbjct: 121 LMLDSLSLDAG--VNW-----DYFILLITKTGLRFSEALAVTPNDFDFARQTLNINKTWD 173 Query: 196 -KIRIVPLLP-----SVRKAILEYYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRY 246 K R P S+RK L++ + F L+ P+F +R K N + Y Sbjct: 174 YKSRQAGFAPTKNFSSMRKIQLDWQTVIQFSQLTKELSEDKPIF--VRSKVYNDTI-NHY 230 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + +L + G+P+ + H LRH+ A+ LL G + S+ LGH ++TTQ Sbjct: 231 LERLCKKSGIPI-ISVHGLRHTHASLLLYAGVSIASVARRLGHSNMNTTQ 279 >gi|294778532|ref|ZP_06743955.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] gi|294447794|gb|EFG16371.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] Length = 403 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 71/151 (47%), Gaps = 20/151 (13%) Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYY 214 L+GC GL + +LT I MD I + K R+ VPL+ ++ I Y Sbjct: 224 FLFGCFTGLSYIDIKTLTHDKIQRMDFDGEEWIITRRTKTRVSSNVPLMEIAKELIERYR 283 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL- 273 L DL P+ P N V +++Q+ + G+ H RH+FAT + Sbjct: 284 GLAGGDL----VFPM-------PSNS-VCNTHLKQIAKACGIHKEIGFHLSRHTFATTVY 331 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 L NGG + ++ ILGH +STTQIY V ++ Sbjct: 332 LCNGGTIEALSKILGHKHISTTQIYAEVTNR 362 >gi|291522348|emb|CBK80641.1| Site-specific recombinase XerD [Coprococcus catus GD/7] Length = 350 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 69/301 (22%), Positives = 133/301 (44%), Gaps = 30/301 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFL----AFYTEEKI---TIQTIRQLSYTEIRA 73 + ++LEI + + T ++Y D F FL ++ ++ I I+ + ++ ++ Sbjct: 32 YFRSLEIRKSTN--TRKNYAYDLGVFFYFLKTNNPYFKDKDIHTLPIEVLDMITAMDVEE 89 Query: 74 FISKRRT-QKIG------DRSLKRSLSGIKSFLKY-LKKRKITT----ESNILNMRNLK- 120 ++S + K G + R LS +KSF Y KK I T + ++ ++N Sbjct: 90 YLSYLESYTKDGKLYTNREEGKARKLSSLKSFYDYYFKKNLIRTNPPRQVDVPKIKNKNI 149 Query: 121 ---KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 N + + L+E ++ + L + +TK R+ AIL LL G G+R+SE + L Sbjct: 150 IRLDPNEIAQLLDEAESGEKLSGRQLASHEKTK---VRDVAILTLLLGTGIRVSECVGLN 206 Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRG 235 +++ + +RI KG ++ V +A+ Y + + + LF + Sbjct: 207 LEDVDFNNGAIRIIRKGGNEALIYFGDEVSQALEAYMNGSRKTAEPAAGHEEALFISLNK 266 Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 + +R +++ R + T H LR +F T L GD+ + LGH ++TT Sbjct: 267 TRITTRSVERLVKKYSRLVTTVKKITPHKLRSTFGTALYQETGDIYLVADTLGHKDVNTT 326 Query: 296 Q 296 + Sbjct: 327 K 327 >gi|210610698|ref|ZP_03288579.1| hypothetical protein CLONEX_00769 [Clostridium nexile DSM 1787] gi|210152331|gb|EEA83337.1| hypothetical protein CLONEX_00769 [Clostridium nexile DSM 1787] Length = 328 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 55/251 (21%), Positives = 111/251 (44%), Gaps = 25/251 (9%) Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK----SFLKYLKKRKITTESNILNM 116 +T+ + ++R ++S+ + +K S K ++ I+ SF +L+ +S + + Sbjct: 87 KTVCTIETEDLRTYLSRYQAEK---ESSKVTIDNIRRIFSSFFAWLEDEDYIIKSPVRRI 143 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 +K ++ + ++Q T+ DN + R+ A++ +L G+R+ E + L Sbjct: 144 HRIKSASVIKETYTDEQLETMRDNC----------DNLRDLALIDILASTGMRVGELVLL 193 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG- 235 +I ++ + GKGDK R+V + + Y D + N LF ++ Sbjct: 194 NRDDISFEERECVVFGKGDKERMVYFDARTKLHLQNYLDSRTDNEN-----ALFVSLKAP 248 Query: 236 -KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 K + G + +R++ + L + H R + AT + G + +Q +LGH R+ T Sbjct: 249 YKRMKIGGIEVRLREMGKRLNIE-KVHPHKFRRTLATVAIDKGMPIEQLQKLLGHQRIDT 307 Query: 295 TQIYTNVNSKN 305 T Y V N Sbjct: 308 TLQYAMVKQSN 318 >gi|189461054|ref|ZP_03009839.1| hypothetical protein BACCOP_01701 [Bacteroides coprocola DSM 17136] gi|265753998|ref|ZP_06089353.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|189432144|gb|EDV01129.1| hypothetical protein BACCOP_01701 [Bacteroides coprocola DSM 17136] gi|263235712|gb|EEZ21236.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 376 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 17/139 (12%) Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR---IVPLLPSVRKAILEYYDLCPFDLN 222 CGLRIS+ + L +N+ D R+ K + +PL K + E D D Sbjct: 235 CGLRISDIVGLKWKNVFVDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPEREDKAADDHV 294 Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282 ++ P +Y++ G+ T HT RH+FAT +L+ G DL + Sbjct: 295 FSL--------------PSNINQYLKPWAEAAGITKRFTFHTARHTFATMMLTLGADLYT 340 Query: 283 IQSILGHFRLSTTQIYTNV 301 + +LGH + TQ+Y + Sbjct: 341 VSKLLGHTSVRMTQVYAKI 359 >gi|146301452|ref|YP_001196043.1| phage integrase family protein [Flavobacterium johnsoniae UW101] gi|146155870|gb|ABQ06724.1| phage integrase family protein [Flavobacterium johnsoniae UW101] Length = 305 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 71/157 (45%), Gaps = 12/157 (7%) Query: 158 AILYLLYGCGLRISE--ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215 A+L + YGCGLR SE AL L + +R GK K R VP+ +V + +Y Sbjct: 144 ALLSVAYGCGLRRSEISALDLKDVKLATGMVVVR-SGKNSKRREVPMSDTVMGYLKKYIQ 202 Query: 216 ------LCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 L + +G R G+ LN + ++ I Q + + + T H LRH Sbjct: 203 EERSQRLAGKNQTEEAFFINSKGRRSTGENLND-ILKKMIEQTKNFELIQKDITLHCLRH 261 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 S A HL N + I+ LGH ++TT IY N K Sbjct: 262 SIANHLAENNAGIDFIRRFLGHSDINTTYIYALKNKK 298 >gi|304382835|ref|ZP_07365318.1| integrase [Prevotella marshii DSM 16973] gi|304336020|gb|EFM02267.1| integrase [Prevotella marshii DSM 16973] Length = 410 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 100/204 (49%), Gaps = 28/204 (13%) Query: 109 TESNILNMRNLKKSNS-LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC- 166 TE IL+ ++K ++ +PRAL+ K + + ++ L+ +E + ARN L+ C Sbjct: 212 TERPILDFVKIEKGDAKMPRALD-KASFEKLQSLKLN-EYEKELETARN----LFLFSCY 265 Query: 167 -GLRISEALSLTPQNI-MDDQ--STLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221 G+ + + L +++ +DD+ S L+ Q K D + V LLP + I+E Y D Sbjct: 266 TGVSYCDMMCLNQEHLFLDDEGKSWLKFQRQKTDSLSRVKLLPEA-EHIIEKYSSEERD- 323 Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280 LF I P RY+ + L+ G+ + TAH RHSF T L G + Sbjct: 324 ------TLFPNI------PYTTYRYLLKGLQHRAGITIPITAHLARHSFGTLTLEAGIPI 371 Query: 281 RSIQSILGHFRLSTTQIYTNVNSK 304 SI ++GH +++TQIY + + Sbjct: 372 ESIAKMMGHSSIASTQIYAQITDQ 395 >gi|261879699|ref|ZP_06006126.1| integrase [Prevotella bergensis DSM 17361] gi|270333720|gb|EFA44506.1| integrase [Prevotella bergensis DSM 17361] Length = 406 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 82/316 (25%), Positives = 143/316 (45%), Gaps = 47/316 (14%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 + + I+R L L++Y+ L L Y ++K + I LS + +AFI Sbjct: 123 ERIGIDRALKTFKLRTYQ------LSLLREYVQKKHKVCDI-PLSQLD-KAFIEGFEYYL 174 Query: 83 IGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMR-----NLKKSNSLPRALNEKQALT 136 DR LKRS I S L L+ ++T + +L+ + ++ PR++ + + Sbjct: 175 TIDRRLKRS--SISSALSTLQTIVRMTVKKGVLDFYPFLGYSYERPKGEPRSITQDELQK 232 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKG 194 ++D E +W + R L++ + C GL IS+ +L +NI+ ++ L I+G+ Sbjct: 233 IID-------LEIEWENYRIVRDLFV-FSCFTGLAISDVRNLREENIVTEEGELCIKGRR 284 Query: 195 DKIRI---VPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 K + V +LP AI+E Y F ++ + G+ YI+ Sbjct: 285 MKTKTPYRVQVLPPAW-AIMERYRGKRAGFVFDVPTTDIILNGMH-----------YIQ- 331 Query: 250 LRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 R +G+ T H RH+FA+ + LS G + ++ +LGH L TTQ+Y V+S+ Sbjct: 332 --RNIGMETPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERIHR 389 Query: 309 WMMEIYDQTHPSITQK 324 M I + + T K Sbjct: 390 DMQAIQQRIQDTFTLK 405 >gi|58577494|emb|CAG29647.1| transposase A [Staphylococcus lentus] Length = 361 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 108/245 (44%), Gaps = 36/245 (14%) Query: 67 SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP 126 + T ++++ K D S + K FL ++ K + + + NIL +R KK L Sbjct: 112 AVTSFLEYLNRTENFKAIDMSKEARGRNFKGFLHHISKGR-SYKKNILKLRVKKK---LV 167 Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDD 184 + L Q +++ HT R+ ++ L+Y GLRI EALSL ++I D+ Sbjct: 168 QVLEHGQVKAIIEAC--HTK--------RDKLLIMLMYEGGLRIGEALSLRIEDISTWDN 217 Query: 185 QSTLRIQGKGDKIRIVPLLP----SVRKAILEYY----------DLCPFDLNLNIQLPLF 230 Q +R + + + L V K ++ Y DL + +N++ F Sbjct: 218 QINIRPRDHNENGAYIKLKKERTIDVSKELMALYTDYLVHEYGEDLDHDYIFINLKDSYF 277 Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290 G PL IR+L + G+ TAH LRH+ AT L+ +G D +Q LGH Sbjct: 278 ----GHPLKYQSVLDLIRRLGKRTGITF--TAHILRHTHATELIRSGWDGAYVQKRLGHA 331 Query: 291 RLSTT 295 + TT Sbjct: 332 HVQTT 336 >gi|164688222|ref|ZP_02212250.1| hypothetical protein CLOBAR_01867 [Clostridium bartlettii DSM 16795] gi|164602635|gb|EDQ96100.1| hypothetical protein CLOBAR_01867 [Clostridium bartlettii DSM 16795] Length = 393 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 25/236 (10%) Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN-LKKSNSLPRA---LNEKQALTLVD 139 +R+L R S I + K+L R +NI + N +K P A L+ + + ++D Sbjct: 105 NNRALARKKSSISTLFKFLY-RNEQLPTNITDGFNPIKLPKPQPDAIKRLDIDEVMVMLD 163 Query: 140 NVL----LHTSHETKW--IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 V L + W R+ AIL L GLR++E L + + +I K Sbjct: 164 AVESGEGLTEKEKVYWEKTKLRDKAILALFVTYGLRLNELRELNISSFNFSRGEFKIYRK 223 Query: 194 GDKIRIVPLLPSVRKAILEYYDL---CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 K ++P+ + +++Y + DL ++Q LF ++ K L P R IRQL Sbjct: 224 RGKEVLMPINKTCENVVIDYINYERPKSEDLPEDVQDALFLSLQRKRLTP----RAIRQL 279 Query: 251 -RRYLGLPLSTT------AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 ++Y + + T+ H LR + AT L+ +G + ++++L H ++TTQ+Y Sbjct: 280 VKKYTSICMHTSRDKGYSPHKLRATAATSLIQSGFSIYDVKALLDHDNVTTTQLYA 335 >gi|240173410|ref|ZP_04752068.1| Integrase [Mycobacterium kansasii ATCC 12478] Length = 346 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 78/309 (25%), Positives = 124/309 (40%), Gaps = 26/309 (8%) Query: 29 RGLSKLTLQSYECDTRQFLIFLA---FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85 RGLS T+++Y FL +LA E ++ + A+++ +R Sbjct: 28 RGLSPKTVEAYRISLECFLDYLAEAEHIGREHVSFDRFDRPHLKGWLAWMTDQRHYTPKT 87 Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA---LNEKQALTLVDNVL 142 +L+ LS IK+FL Y +T + + LK R L E Q ++ Sbjct: 88 VTLR--LSAIKAFLAYAAYEDLTLVALSQAAKALKAPAGPRRPVEYLTEAQTRAILAAFT 145 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVP 201 T+ RN +L LLY R+ E LT ++ + + + + GKG+K R+VP Sbjct: 146 GQTAKSR-----RNRMLLILLYDTAARVGEITGLTLGDLRLTEPGHILLTGKGNKTRVVP 200 Query: 202 LLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGI-RGKPLN------PGVFQRYIRQLR-R 252 L + Y D P L + PLF + RG+P V ++ R + Sbjct: 201 LTDKTIGHLHVYLDEFHPNITKLPARRPLFYSLHRGRPAELSADTVAAVLKQAAESARTQ 260 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 +P + H LR + A L G L I +LGH STT + + D M + Sbjct: 261 CPSIPANIHCHLLRKTKAMDLYQQGIPLPIIMRLLGHENASTTAAFYAFATL---DMMRQ 317 Query: 313 IYDQTHPSI 321 + P+I Sbjct: 318 AINAATPAI 326 >gi|261343791|ref|ZP_05971436.1| site-specific recombinase, phage integrase family [Providencia rustigianii DSM 4541] gi|282568175|gb|EFB73710.1| site-specific recombinase, phage integrase family [Providencia rustigianii DSM 4541] Length = 329 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 19/145 (13%) Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215 N + L G R EA+ L +++ ++ G K RIVP+ V I E Sbjct: 181 NKKVAILCLSTGARWGEAVKLKRDHVIQNKIRFTFTKTG-KARIVPISQEVADMICEKKS 239 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275 G+ + +F+R+I+ ++ +PL H LRH+FATH + Sbjct: 240 ----------------GMLFPRTSYHMFRRHIKTIKP--DMPLGQATHALRHTFATHFMM 281 Query: 276 NGGDLRSIQSILGHFRLSTTQIYTN 300 NGG + ++Q ILGH L T Y + Sbjct: 282 NGGSIITLQRILGHSTLQQTLTYAH 306 >gi|223369804|gb|ACM88771.1| integrase [uncultured bacterium] Length = 160 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/40 (62%), Positives = 30/40 (75%) Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 T HT RHSFATHLL G D+R++Q +LGH + TTQIYT Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYT 160 >gi|160890707|ref|ZP_02071710.1| hypothetical protein BACUNI_03152 [Bacteroides uniformis ATCC 8492] gi|237708220|ref|ZP_04538701.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|156859706|gb|EDO53137.1| hypothetical protein BACUNI_03152 [Bacteroides uniformis ATCC 8492] gi|229457773|gb|EEO63494.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 431 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 71/151 (47%), Gaps = 20/151 (13%) Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYY 214 L+GC GL + +LT I MD I + K R+ VPL+ ++ I Y Sbjct: 252 FLFGCFTGLSYIDIKTLTHDKIQRMDFDGEEWIITRRTKTRVSSNVPLMEIAKELIERYR 311 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL- 273 L DL P+ P N V +++Q+ + G+ H RH+FAT + Sbjct: 312 GLAGGDL----VFPM-------PSNS-VCNTHLKQIAKACGIHKEIGFHLSRHTFATTVY 359 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 L NGG + ++ ILGH +STTQIY V ++ Sbjct: 360 LCNGGTIEALSKILGHKHISTTQIYAEVTNR 390 >gi|149184910|ref|ZP_01863227.1| phage integrase [Erythrobacter sp. SD-21] gi|148831021|gb|EDL49455.1| phage integrase [Erythrobacter sp. SD-21] Length = 338 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 55/211 (26%), Positives = 97/211 (45%), Gaps = 30/211 (14%) Query: 23 QNLEIERGLSKLTLQSYE-CDTRQFLIFLAFYTEE---KITIQTIRQLSYTEIRAFISKR 78 ++L ER +S T+++Y C F++ + F ++ + T I I AF+ Sbjct: 14 EHLPRERAVSPHTVKTYANC----FVLLVRFASDRLKRRPTDLEIEDFGTDMIMAFLGHV 69 Query: 79 RTQKIGD-RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALNEKQAL 135 ++ R+ L+ I+SF +Y++ R L +R++ KK+N Sbjct: 70 EVERGSCVRTRNGRLAAIRSFFRYIEYRVPACLDQALRVRSIPSKKANK----------- 118 Query: 136 TLVD-------NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-ST 187 TL+D LL + R+ A+L+L Y GLR+SE +SL ++ D ST Sbjct: 119 TLIDYLDRAEIKALLDAPDPRTRLGTRDRAMLHLTYAAGLRVSELVSLQLRDFPDRSLST 178 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 + I GKG + R++PL + A+ + + P Sbjct: 179 VHIMGKGRRERVLPLWKETQSALRAWLVIRP 209 >gi|223369826|gb|ACM88782.1| integrase [uncultured bacterium] Length = 163 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/64 (46%), Positives = 40/64 (62%) Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L+P QR R+ + T HTLRHSFA HLL++G ++R+IQ +L H L TT I Sbjct: 99 LSPATLQRAFRRAVATSDIHKHATVHTLRHSFARHLLAHGTEIRTIQLLLEHRSLQTTMI 158 Query: 298 YTNV 301 YT+V Sbjct: 159 YTHV 162 >gi|145590241|ref|YP_001156838.1| phage integrase family protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048647|gb|ABP35274.1| phage integrase family protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 188 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 17/182 (9%) Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 S R LN ++ ++D+V T+ ARN A+L L + G+R++E +L ++++ Sbjct: 2 SQARVLNPQELRRVLDHV------ATRRHSARNRAMLLLTHYAGMRVAEVAALRINDVLN 55 Query: 184 DQSTLR-------IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 ST++ Q KG R V L ++K + +Y + + PLF + Sbjct: 56 GDSTIKGEVRLMPDQTKGKHARTVYLNERMQKELAQYIKMLKIK---DASKPLFYTQKQA 112 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + +Y L R L ++H+ R SF T L + G + ++S+ GH +STT Sbjct: 113 GFSANSLTQYFFYLYRACALA-GASSHSGRRSFLTGLANKGTAIHILKSLAGHRNISTTA 171 Query: 297 IY 298 Y Sbjct: 172 TY 173 >gi|313157227|gb|EFR56657.1| site-specific recombinase, phage integrase family [Alistipes sp. HGB5] Length = 402 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 54/218 (24%), Positives = 96/218 (44%), Gaps = 21/218 (9%) Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 R+L+G + KK K + + ++K S+ + ++ L+D + H +E Sbjct: 189 RALNGALNSAVRKKKMKANPFNELEKSEKIRKPESMRSYMTIEEVQALIDTPMPHEEYEI 248 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR---IVPLLPSV 206 A L+ + CGLRIS+ + L ++ D+ R+ K + +PL P Sbjct: 249 -----VKCAYLFSCF-CGLRISDIIKLKWNDVFVDRGQYRLAVSMKKTKEPIYLPLSPEA 302 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 K + E D N+ LP IR + ++ + G+ + HT R Sbjct: 303 LKWMPERGGKSSED-NV-FDLPSANTIRMQ----------LKPWAKAAGISKRFSYHTSR 350 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 H+FAT +L+ G DL ++ +LGH + TQ+Y + +K Sbjct: 351 HTFATMMLTLGADLYTVSKLLGHADVKMTQVYAKIINK 388 >gi|253571052|ref|ZP_04848460.1| integrase [Bacteroides sp. 1_1_6] gi|251840001|gb|EES68084.1| integrase [Bacteroides sp. 1_1_6] Length = 381 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 54/218 (24%), Positives = 96/218 (44%), Gaps = 21/218 (9%) Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 R+L+G + KK K + + ++K S+ + ++ L+D + H +E Sbjct: 168 RALNGALNSAVRKKKMKANPFNELEKSEKIRKPESMRSYMTIEEVQALIDTPMPHEEYEI 227 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR---IVPLLPSV 206 A L+ + CGLRIS+ + L ++ D+ R+ K + +PL P Sbjct: 228 -----VKCAYLFSCF-CGLRISDIIKLKWNDVFVDRGQYRLAVSMKKTKEPIYLPLSPEA 281 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 K + E D N+ LP IR + ++ + G+ + HT R Sbjct: 282 LKWMPERGGKSSED-NV-FDLPSANTIRMQ----------LKPWAKAAGISKRFSYHTSR 329 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 H+FAT +L+ G DL ++ +LGH + TQ+Y + +K Sbjct: 330 HTFATMMLTLGADLYTVSKLLGHADVKMTQVYAKIINK 367 >gi|329964312|ref|ZP_08301393.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] gi|328525361|gb|EGF52409.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] Length = 410 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 65/251 (25%), Positives = 116/251 (46%), Gaps = 39/251 (15%) Query: 78 RRTQKIGDRSLKRSLSG--IKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNE--- 131 +R K+ D L R +SG ++ F YLK K ++ ++ M+ KK +L A NE Sbjct: 153 KRDYKVDDMLL-REVSGELVRKFDLYLKTEKHCAQNTVIRYMKCFKKVINLAIA-NEWLT 210 Query: 132 ---------------KQALTLVD-NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175 KQ L+ + N + + ++ ++ +Y GL + + Sbjct: 211 KNPFAGIKFHEVEVNKQFLSQAEINRIWQKEFRIERLELVRDVFIFCVYT-GLAFIDVYN 269 Query: 176 LTPQNIMDDQS----TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231 L P+++++D + ++ + K + I +PLL S+ K ILE Y P+ ++ LP+ Sbjct: 270 LRPEHVLEDNNGNLWIVKPREKTNNICNIPLL-SIPKQILEKYKDNPYCMDKGTLLPV-- 326 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHF 290 P N + Y++++ G+ + T HT RHSFA+ + L+N L ++ +LGH Sbjct: 327 -----PCNQKM-NSYLKEIADLCGIKKNLTTHTARHSFASVIALANNVSLPNVAKMLGHS 380 Query: 291 RLSTTQIYTNV 301 TQ Y V Sbjct: 381 STRMTQHYAKV 391 >gi|229020853|ref|ZP_04177558.1| Integrase/recombinase [Bacillus cereus AH1273] gi|229022059|ref|ZP_04178613.1| Integrase/recombinase [Bacillus cereus AH1272] gi|228739211|gb|EEL89653.1| Integrase/recombinase [Bacillus cereus AH1272] gi|228740440|gb|EEL90733.1| Integrase/recombinase [Bacillus cereus AH1273] Length = 315 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 57/265 (21%), Positives = 118/265 (44%), Gaps = 13/265 (4%) Query: 40 ECDTRQFLIFLAFYTEEKI--TIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKS 97 +C R + Y E + I+ + ++ +I+ I + + + + ++ L KS Sbjct: 42 DCQLRNLRPYTIKYYRESLQTKIKPLVLMTEDDIKNMIMEMQRRGLKVTTINTKLRAFKS 101 Query: 98 FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157 F +L K K ++ I +++ LK+ + L++ Q +LL ++ R+ Sbjct: 102 FYNFLHKHKHIKKNPIADIKLLKQRKEVVPTLSKDQI-----KLLLSLCDRKTFVGVRDY 156 Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 I+ L+ +R++E ++ ++ ++ +R + K RIVP+ +++ + Y + Sbjct: 157 TIMMLMLDTAIRVNELANIEVADVKHNEIVIR-ETKTFFERIVPMSKKLKEQMEIYIKIR 215 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSN 276 + + LF G L Q I + G+ + +AHT RH+ A + N Sbjct: 216 GYAESD----KLFLNQDGNELKKRSIQTRIEYYGKLSGIKDVRVSAHTFRHTSAKLFIQN 271 Query: 277 GGDLRSIQSILGHFRLSTTQIYTNV 301 GG+ +Q +LGH L T+ Y N+ Sbjct: 272 GGNAFHLQQLLGHTSLEITKKYVNL 296 >gi|120403139|ref|YP_952968.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] gi|119955957|gb|ABM12962.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] Length = 367 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 78/333 (23%), Positives = 139/333 (41%), Gaps = 66/333 (19%) Query: 12 FELLKERQNWLQNL-EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR------ 64 F +++ +L +L IER S T+++Y D R + FLA + I + +R Sbjct: 23 FAVVEPADVFLAHLTAIER--SPGTVRAYAFDLRDYFEFLAAH---GIDWRAVRLEHLGR 77 Query: 65 -----QLSYTEIRAFISKRRT--QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117 +L T+ A ++ T + ++ R L+ + SF K+ + + + M+ Sbjct: 78 FVGWLRLPPTQRTASVTSLSTMEAQCSASTINRKLAAVGSFYKFYHRHGVGCGELLSTMK 137 Query: 118 --------------------------NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 LK LPR L E+ +V+ Sbjct: 138 AGGARGSWRPFLAHLGSAGDQHRRTIKLKTRRRLPRTLPEESVQLIVNAC---------- 187 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----GDKI----RIVPLL 203 R+ ++ LL G G+RI EAL L ++I + +RI+ + G ++ R +P+ Sbjct: 188 DRLRDRFLIELLAGTGMRIGEALGLRHEDIDAAGTLIRIRARRNSNGARVKGGQREIPVA 247 Query: 204 PSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 S+ + +Y +L+ + + + L+ G G PL + +LR G+ T Sbjct: 248 ASLIRLYTDYLVDEYGELDCDYVFVNLWGGSVGTPLRYWNVTDLVSRLRARSGVEF--TV 305 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 H LRH++AT LL G +Q +LGH ++TT Sbjct: 306 HMLRHTYATDLLRRGVPAEVVQKLLGHASVTTT 338 >gi|83815097|ref|YP_445629.1| tyrosine recombinase xerC [Salinibacter ruber DSM 13855] gi|83756491|gb|ABC44604.1| tyrosine recombinase xerC [Salinibacter ruber DSM 13855] Length = 311 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 60/244 (24%), Positives = 94/244 (38%), Gaps = 41/244 (16%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S KR LS +KS + K + N+ + S P N++ L + L Sbjct: 56 SQKRKLSAVKSLFTFGTKLRYFAH-------NVGAALSTPSVRNDRAERILSEADLWALL 108 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----------DQSTLRIQGKGDK 196 + + D RN +L L Y G RIS+ L +++ D + GKG K Sbjct: 109 RDER--DLRNHVLLRLFYASGGRISDVEDLRWRDLKDRPDLNGPDGRPGGQVTFFGKGGK 166 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL------ 250 R V L V I+ + + + P+FR +G L+ R +++ Sbjct: 167 TRAVTLYSKVWSLIIRLRENEESEGHGAADDPVFRSQKGGCLSRSQIWRVVKKAAVRAGV 226 Query: 251 -------------RRYLGLPLSTT---AHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 R G P+ T+ H RH+ A+H L G DL ++ LGH + T Sbjct: 227 KLTEKTGSEGAVKRDEEGEPIMTSEVSPHWFRHAHASHALQKGADLELVRETLGHESIET 286 Query: 295 TQIY 298 T+ Y Sbjct: 287 TKTY 290 >gi|229176443|ref|ZP_04303878.1| Tn554-related, transposase A [Bacillus cereus MM3] gi|228607025|gb|EEK64412.1| Tn554-related, transposase A [Bacillus cereus MM3] Length = 372 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 57/215 (26%), Positives = 102/215 (47%), Gaps = 31/215 (14%) Query: 96 KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155 KSFL ++ K K + N+L ++ +K + +Q T N+ R Sbjct: 145 KSFLHHINKNKPSIR-NVLKVKEPRKRIQILTKEQVRQTFTATTNI-------------R 190 Query: 156 NSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRIQGK-------GDKIRIVPLLPSVR 207 ++ ++ LL+ GLRI EALSL ++ I D Q RI+ + G K++ V Sbjct: 191 DAFLIQLLFETGLRIGEALSLYLEDFIFDHQKGHRIRLRDRGELENGAKLKTGEREIFVS 250 Query: 208 KAILEYYDLCPFDL--NLNIQLP-LFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLST 260 + +++ YD +++ LNI+ +F +RG+ P+N + ++LR+ + + Sbjct: 251 QHLMDLYDDYLYEIIDGLNIETNFVFIKLRGRNMGRPMNYSDVESLFKRLRKKTKIDIH- 309 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 H LRH+ AT D++ +Q LGH ++ TT Sbjct: 310 -PHLLRHTHATIYYQETKDIKQVQERLGHAQIQTT 343 >gi|255505939|ref|ZP_05349026.3| integrase/recombinase, phage integrase family [Bryantella formatexigens DSM 14469] gi|255264981|gb|EET58186.1| integrase/recombinase, phage integrase family [Bryantella formatexigens DSM 14469] Length = 332 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 64/264 (24%), Positives = 111/264 (42%), Gaps = 51/264 (19%) Query: 61 QTIRQLSYTEIRAFISKRR----TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116 Q IR++S EIR ++ + K+ +++R++S SF +L++ +S + + Sbjct: 91 QPIRKISTEEIRKYLVDYQKINNCSKVTVDNIRRNIS---SFFSWLEEEDYILKSPMKRI 147 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 +K + +++ +A+ L L S E +R+ A++ LLY G+R+ E ++L Sbjct: 148 HKIKTKQPVKETISD-EAIEL-----LRDSCEC----SRDLAMIDLLYSTGIRVGELVNL 197 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 ++ + + GKGDK R V FD + L + R Sbjct: 198 NISDVDFEARECIVFGKGDKERKV-----------------YFDAKAKLHLQNYLKTRAD 240 Query: 237 PLNPGVF---------------QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281 NP +F + IR L R L + H R + AT + G + Sbjct: 241 D-NPALFVSLDEPHDRLKISGVEIRIRSLGRKLNME-KIHPHKFRRTMATRAIDKGMPIE 298 Query: 282 SIQSILGHFRLSTTQIYTNVNSKN 305 +Q ILGH ++ TT Y VN N Sbjct: 299 QVQKILGHSQIDTTMQYAIVNQTN 322 >gi|189467606|ref|ZP_03016391.1| hypothetical protein BACINT_03996 [Bacteroides intestinalis DSM 17393] gi|189435870|gb|EDV04855.1| hypothetical protein BACINT_03996 [Bacteroides intestinalis DSM 17393] Length = 330 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 111/247 (44%), Gaps = 29/247 (11%) Query: 67 SYTEIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122 S +IRA+++ K ++ K+ +++R S SF +L++ +S I + +K Sbjct: 95 STEDIRAYLAVFQRKNKSSKVTIDNIRRIFS---SFFAWLEEEDYIIKSPIRRIHKVKTG 151 Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 + L ++ L DN I R+ A++ LL G+R+ E + L ++I Sbjct: 152 TQVKEILTDENIEHLRDN----------CIKIRDLAMIDLLASTGMRVGELVKLDREDIN 201 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN--- 239 ++ + GKG+K RIV + K L+ Y D N + + L KP N Sbjct: 202 FNERECIVFGKGNKERIV-YFNARAKIHLQQYLSTRKDRNKALFVSL-----AKPHNRLQ 255 Query: 240 -PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 GV R +R++ R + + H R + AT + G + +Q +LGH ++ TT Y Sbjct: 256 ISGVETR-LRKIGRQAKI-VRVHPHKFRRTLATMAIDKGMPVEQVQKLLGHVKIDTTMHY 313 Query: 299 TNVNSKN 305 V+ N Sbjct: 314 AMVSQNN 320 >gi|313680019|ref|YP_004057758.1| integrase family protein [Oceanithermus profundus DSM 14977] gi|313152734|gb|ADR36585.1| integrase family protein [Oceanithermus profundus DSM 14977] Length = 345 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 57/241 (23%), Positives = 105/241 (43%), Gaps = 17/241 (7%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ-ALTLVDNVLLHT 145 S+ L+G+++F + L+ + ++ ++ PR L L +L H Sbjct: 112 SVATYLAGVRAFYRALEWAGAAVAPDDVHA----PADPTPREERRPALPLELYRRLLEHL 167 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPL-- 202 R+ A++ L+ GLRISE + L + ++ + + ++ GKG K R VP+ Sbjct: 168 DDPEDAGKLRDRAMVRLMAEAGLRISEVIHLDEADFLEAERLVVVRSGKGGKQRTVPVTR 227 Query: 203 -----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 L + R+ Y + L +N R RG+ L+ + ++ + + LG P Sbjct: 228 GLAAELAAWRRLRRAYAEPGESALFVNTG---GRKNRGRRLSASLLRKRLARYYEALGFP 284 Query: 258 LS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 AH LRH+ T GDL +LGH ++T+ IY ++ + D + + D+ Sbjct: 285 PRYRGAHMLRHTAGTRFYRATGDLHVTARLLGHANVNTSAIYAKMDLEGLRDAVDRLEDE 344 Query: 317 T 317 Sbjct: 345 A 345 >gi|226949169|ref|YP_002804260.1| site-specific recombinase, phage integrase family [Clostridium botulinum A2 str. Kyoto] gi|226843724|gb|ACO86390.1| site-specific recombinase, phage integrase family [Clostridium botulinum A2 str. Kyoto] Length = 330 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 70/300 (23%), Positives = 126/300 (42%), Gaps = 49/300 (16%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK----IG 84 + LSK T+ SYE R F +L EE+ I +++++ IR +I+ + + +G Sbjct: 18 KNLSKKTMMSYEQTLRLFTKYL----EEEKGIGDVKKVTEKMIREYINYTKNRGKYTIVG 73 Query: 85 DR---------------------SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 D+ ++ + IK F +L ++ + + N++ K Sbjct: 74 DKETLKTNTPEMRKDYGKKVSITTINNYIRNIKVFFNFLLEQSYIKKDVVKNIKQFKNQR 133 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-M 182 + + Q L+ ++ TK+ + R+ + LL G+RI E L + +NI M Sbjct: 134 KAKEFITDSQFAELLRHI-----DTTKFHERRDHLCIMLLLDTGMRIGECLEIKVENIDM 188 Query: 183 DDQSTL--RIQGKGDKIRIVPLLPSVRKAI---LEYYD-LCPFDLNLNIQLPLFRGIRGK 236 + +S L KG + R V + K + L+Y D D LF +G Sbjct: 189 NYRSILLPAEDTKGKRDRYVYFSQVMNKELRRWLQYKDRYVESDY-------LFCTTKGT 241 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 P+ F+R ++ GL H LR++FA L +GG + + +LGH + T+ Sbjct: 242 PVLIRTFERKLKDYANRAGLK-DIHPHQLRNNFAKRFLMSGGSIYILSQVLGHSSVKVTE 300 >gi|223369787|gb|ACM88763.1| integrase [uncultured bacterium] Length = 163 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/42 (59%), Positives = 31/42 (73%) Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T HT RHSFATH L G D+R++Q +LGH + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHPLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|302386391|ref|YP_003822213.1| integrase family protein [Clostridium saccharolyticum WM1] gi|302197019|gb|ADL04590.1| integrase family protein [Clostridium saccharolyticum WM1] Length = 351 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 56/223 (25%), Positives = 105/223 (47%), Gaps = 15/223 (6%) Query: 85 DRSLKRSLSGIKSFLKYL--KKRKITTESNILNMRNLKKSNSLPRALNEKQALTL--VDN 140 +R + R +S +KSF Y +R T ++++ + L + + + ++E AL L V+N Sbjct: 110 ERGIMRKISSLKSFYNYYYRNERLQTNPASLVQLPKLHEKDIIRLDIDE-VALLLDEVEN 168 Query: 141 VLLHTSHETKW---IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 T + + R+ A+L L+ G G+R+SE + L +I +RI KG K Sbjct: 169 GEALTEKQKAYHGKTKVRDLALLTLMLGTGIRVSECVGLDIDDIDLKNGGIRIHRKGGKE 228 Query: 198 RIVPLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 V V A+L+Y + + P D + + LF ++ K + + +++ + Sbjct: 229 VTVYFGSEVENALLDYLEERSIVIPEDGH---EKALFLSLQRKRIAVRSVENLVKKYSKL 285 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + T H LR ++ T L GD+ + +LGH ++TT+ Sbjct: 286 VTPLKQITPHKLRSTYGTSLYKETGDIYLVADVLGHSDVNTTK 328 >gi|145225223|ref|YP_001135901.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK] gi|315445672|ref|YP_004078551.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] gi|315445685|ref|YP_004078564.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] gi|315445693|ref|YP_004078572.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] gi|315446113|ref|YP_004078992.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] gi|145217709|gb|ABP47113.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK] gi|315263975|gb|ADU00717.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] gi|315263988|gb|ADU00730.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] gi|315263996|gb|ADU00738.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] gi|315264416|gb|ADU01158.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] Length = 360 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 72/148 (48%), Gaps = 2/148 (1%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ A+ L+ GLR E L+L ++ +++ GKG K R VPL V I Y Sbjct: 194 RDRALAGLMLLSGLRSGELLTLDVTDVDIGARWVKVMGKGAKERRVPLDVEVAGLIQTYL 253 Query: 215 DLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 + + + N + +G RG+PL + R R G+ L+ H LRH+F T + Sbjct: 254 LVERPESDSNRLFLVAKGPHRGQPLTAAGLRTIFRYHRIKSGV-LAGHPHALRHTFGTAM 312 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G DL +Q++LGH + TT Y ++ Sbjct: 313 AEAGVDLAVMQALLGHAHIDTTARYIHL 340 >gi|91215841|ref|ZP_01252810.1| integrase/recombinase-related protein [Psychroflexus torquis ATCC 700755] gi|91185818|gb|EAS72192.1| integrase/recombinase-related protein [Psychroflexus torquis ATCC 700755] Length = 84 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/56 (53%), Positives = 36/56 (64%), Gaps = 1/56 (1%) Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 Y + ++ G P ST HTLRHSFATHL+ G LR IQ+ LGH TT+IYT V Sbjct: 2 YRKAVKETNGNPWST-PHTLRHSFATHLMERGTSLRHIQAALGHNSSKTTEIYTRV 56 >gi|119945594|ref|YP_943274.1| phage integrase family protein [Psychromonas ingrahamii 37] gi|119864198|gb|ABM03675.1| phage integrase family protein [Psychromonas ingrahamii 37] Length = 331 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 91/187 (48%), Gaps = 14/187 (7%) Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178 +KK +L A N K + D L ++TK + R+ AI+ +L GCGLR +E +++ Sbjct: 135 IKKEGTLLSAENIKDLIKSCDQDL----NKTKGV--RDKAIIIILRGCGLRRTELINIRI 188 Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR---- 234 I + L + GK +K R + V++AI ++ L +L I F +R Sbjct: 189 NRINFTEKKLTVVGKSNKEREIWFSDRVKEAISDWLGLIN-KASLQISDDNFLFLRAHKS 247 Query: 235 GKPLNPGVFQRY---IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291 GK +N + + I Q ++ L + H R ++ T L+++G + IQ ++GH Sbjct: 248 GKIINQRICSQTIFDIFQAKQKLMMVKKFGPHDFRRTYITELINDGNAIEDIQGLVGHSS 307 Query: 292 LSTTQIY 298 TT++Y Sbjct: 308 PETTRVY 314 >gi|89147438|gb|ABD62579.1| integrase [uncultured bacterium] Length = 163 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 23/42 (54%), Positives = 32/42 (76%) Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + H LRHSFATHLL G D+R++Q ++GH ++TT IYT+V Sbjct: 121 VSCHMLRHSFATHLLEQGCDIRTVQQLMGHKNVATTMIYTHV 162 >gi|327460988|gb|EGF07321.1| phage integrase family integrase/recombinase [Streptococcus sanguinis SK1057] Length = 328 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 60/251 (23%), Positives = 112/251 (44%), Gaps = 27/251 (10%) Query: 62 TIRQLSYTEIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117 IR L+ +++R +++ +R++ K+ +++R S SF +L+ +S + + Sbjct: 88 AIRDLTTSDLRTYLAHYQQERKSSKVTIDNMRRIFS---SFFGWLEDEDYILKSPVRRIH 144 Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 +K ++ +++ L D HE R+ A++ LL G+R+ E + L Sbjct: 145 KIKTDKTIKETFSDEGLELLRD-----ACHEI-----RDLAMIDLLASTGMRVGELVGLN 194 Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD---LNLNIQLPLFRGIR 234 ++I + + GKG+ RIV + ++ Y D D L +++ P R + Sbjct: 195 REDINFYERECLVFGKGNSERIVYFDARTKIHLINYLDSRQDDNPALFVSLSSPYNRLLI 254 Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 G GV R +RQ+ L H R + AT + G + +Q +LGH ++ T Sbjct: 255 G-----GVETR-LRQIGEKADLN-KVHPHKFRRTLATRAIDKGMPIEQVQHLLGHVKIDT 307 Query: 295 TQIYTNVNSKN 305 T Y VN N Sbjct: 308 TMHYAMVNQAN 318 >gi|189353108|ref|YP_001948735.1| integrase [Burkholderia multivorans ATCC 17616] gi|189337130|dbj|BAG46199.1| integrase [Burkholderia multivorans ATCC 17616] Length = 397 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 78/192 (40%), Gaps = 34/192 (17%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM-------DDQSTLRIQGKGDKIRIVPLLPSVR 207 R + LLY GLRI+EA T D+ L + GKG + R+VP + Sbjct: 208 RARWVFTLLYLGGLRITEAAETTMGRFFCRRDASGRDRWWLDVTGKGGRRRLVPATDELM 267 Query: 208 KAILEY---YDLCPF---DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL--- 258 + Y + L P D + + LP G +PL R ++Q+ R+ L Sbjct: 268 TELARYRRAHGLAPLPVADEDTPLVLPF--GQARRPLTRAALHRIVKQVFRHAAERLRAQ 325 Query: 259 ------------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 +AH LRHS +H+ DLR ++ LGH L+TT Y + + Sbjct: 326 GDAGAEQARVLEQASAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHADD--- 382 Query: 307 GDWMMEIYDQTH 318 DW ++ H Sbjct: 383 -DWRHRETEEKH 393 >gi|281425544|ref|ZP_06256457.1| integrase [Prevotella oris F0302] gi|281400350|gb|EFB31181.1| integrase [Prevotella oris F0302] Length = 406 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 76/317 (23%), Positives = 142/317 (44%), Gaps = 49/317 (15%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 + + I+R L L++Y+ L L Y ++K + + LS + +AFI Sbjct: 123 ERVGIDRALKTFKLRTYQ------LSLLREYVQKKHRVSDV-PLSQLD-KAFIEGFEYYL 174 Query: 83 IGDRSLKRS-----LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 DR LKRS +S +++ ++ K+ + L + ++ PR++ +++ + Sbjct: 175 TIDRKLKRSSISSTVSTLQTIVRMAVKKGVLDFYPFLGY-SYERPKGEPRSITQEELEHI 233 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGD 195 +D E KW + R L++ + C GL IS+ +L +NI+ ++ L I+G+ Sbjct: 234 IDL-------EIKWENYRIVRDLFV-FSCFSGLAISDVRNLREENIVLEEGELCIKGRRM 285 Query: 196 KIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL----NPGVFQRYIR 248 K + V +LP + + Y RGIR + + + Sbjct: 286 KTKTPYRVQVLPPALEIMNRY-----------------RGIRAGFVFDVPTTDIILNGMH 328 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 ++R +G+ T H RH+FA+ + LS G + ++ +LGH L TTQIY V+S+ Sbjct: 329 HIQRNIGMKTPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAVVSSERIH 388 Query: 308 DWMMEIYDQTHPSITQK 324 M ++ + + T K Sbjct: 389 RDMQKVQQRIQDTFTLK 405 >gi|161520708|ref|YP_001584135.1| integrase family protein [Burkholderia multivorans ATCC 17616] gi|160344758|gb|ABX17843.1| integrase family protein [Burkholderia multivorans ATCC 17616] Length = 428 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 78/192 (40%), Gaps = 34/192 (17%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM-------DDQSTLRIQGKGDKIRIVPLLPSVR 207 R + LLY GLRI+EA T D+ L + GKG + R+VP + Sbjct: 239 RARWVFTLLYLGGLRITEAAETTMGRFFCRRDASGRDRWWLDVTGKGGRRRLVPATDELM 298 Query: 208 KAILEY---YDLCPF---DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL--- 258 + Y + L P D + + LP G +PL R ++Q+ R+ L Sbjct: 299 TELARYRRAHGLAPLPVADEDTPLVLPF--GQARRPLTRAALHRIVKQVFRHAAERLRAQ 356 Query: 259 ------------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 +AH LRHS +H+ DLR ++ LGH L+TT Y + + Sbjct: 357 GDAGAEQARVLEQASAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHADD--- 413 Query: 307 GDWMMEIYDQTH 318 DW ++ H Sbjct: 414 -DWRHRETEEKH 424 >gi|323703102|ref|ZP_08114757.1| integrase family protein [Desulfotomaculum nigrificans DSM 574] gi|323531996|gb|EGB21880.1| integrase family protein [Desulfotomaculum nigrificans DSM 574] Length = 317 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 81/172 (47%), Gaps = 23/172 (13%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNI-------MDDQSTLRIQGKG--------DKI 197 D +A L LL G G+ + E L+L Q+I +Q+ R + +G DK Sbjct: 124 DLWGAAFLTLL-GTGISLGELLALRWQDIDLKSKVLTINQALARTKSRGLIFVEPKTDKS 182 Query: 198 -RIVPLLPSVRKAILEY-YDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLR 251 R +P+ V +A+ ++ + L + +F G P++P F R LR Sbjct: 183 KRTIPMPEPVAEALQKHRVQMAQIKLAAGPKYTDQDLVFCTTYGTPIHPRNFTRKFYTLR 242 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVN 302 +P H LRH+FAT LL G +L+ +Q +LGH +STT Y++V+ Sbjct: 243 EKAKVPKDINLHALRHTFATRLLEEGENLKVVQDLLGHADISTTANTYSHVS 294 >gi|56475685|ref|YP_157274.1| phage-related integrase [Aromatoleum aromaticum EbN1] gi|58616517|ref|YP_195646.1| putative integrase [Azoarcus sp. EbN1] gi|58616533|ref|YP_195662.1| putative integrase [Azoarcus sp. EbN1] gi|56311728|emb|CAI06373.1| phage-related integrase [Aromatoleum aromaticum EbN1] gi|56315979|emb|CAI10622.1| putative integrase [Aromatoleum aromaticum EbN1] gi|56315995|emb|CAI10638.1| putative integrase [Aromatoleum aromaticum EbN1] Length = 412 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 79/289 (27%), Positives = 132/289 (45%), Gaps = 18/289 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q++ Q L RGL+ T+ +Y R+FL + EE T+ +L+ +++ F+ + Sbjct: 121 QDYAQYLCEARGLATATIINYVPFVREFL--KQQFGEEGATLS---RLNASDVVRFV-QG 174 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITT---ESNILNMRNLKKSNSLPRALNEKQAL 135 + ++ + K + ++SFL+Y + R T + + + N + S+PRA+ ++ Sbjct: 175 QVPRLHLKRAKLMTTALRSFLRYARYRGDVTRDLAAAVPVVANWSMT-SIPRAIAAEEVR 233 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L+ ++ + R+ AIL LL GLR E L +I + L ++GKG Sbjct: 234 QLLGSI-----DRDQPTGRRDYAILLLLARLGLRSGEVAFLELDDIDWNAGQLHVRGKGG 288 Query: 196 KIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 + PL V +AI+ Y + P + + L RG GV +R Sbjct: 289 QRNEFPLPVEVGEAIVAYLHSGRPRSASRRVFLRTRAPNRGFQGACGVCS-LVRHAIERA 347 Query: 255 GLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 G+ T AH RH AT +L G L I +LGH TT+IYT V+ Sbjct: 348 GIHAPTRGAHQFRHGLATEMLRQGASLGEIGELLGHRHPQTTKIYTKVD 396 >gi|326335381|ref|ZP_08201569.1| mobilizable transposon [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692446|gb|EGD34397.1| mobilizable transposon [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 410 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 10/139 (7%) Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226 GLR+S+ L + I++D + + K + V P ++A+ +LC +L + Sbjct: 270 GLRLSDIQRLKWKEIIEDNDKIELHFTQKKTKGVEYKPISKQAL----ELCGERRDL--E 323 Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286 +F + P +P R +++ G+ + T H RH+FAT L+NG D+ ++ + Sbjct: 324 DLVFENL---P-DPAWISRPLKKWITKAGIHKNITFHCFRHTFATLQLANGTDIYTVSKM 379 Query: 287 LGHFRLSTTQIYTNVNSKN 305 LGH + TTQ Y V KN Sbjct: 380 LGHTNVKTTQAYAKVIDKN 398 >gi|88706575|ref|ZP_01104279.1| integrase [Congregibacter litoralis KT71] gi|88699287|gb|EAQ96402.1| integrase [Congregibacter litoralis KT71] Length = 440 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 78/169 (46%), Gaps = 17/169 (10%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG-------DKIRIVPLLPS 205 DA +AI L + G R SE + D TL + K K +++PL PS Sbjct: 260 DAAANAIRVLAF-TGARKSEITEARWSWVNIDAGTLTVPPKSHKSGHITGKPKVIPL-PS 317 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 +A++E D + P RG G L ++ Q+R+ GLP T H+L Sbjct: 318 PARAVIESLTRHGED---DFVFPATRGGGGISLPSKMWI----QIRKEAGLPDGITNHSL 370 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 RHS T + G + I + LGH +LSTTQ Y ++ +++ M+E Y Sbjct: 371 RHSLGTIMAVQGAEAAQIMAALGHSQLSTTQRYIHI-ARDARAAMVEKY 418 >gi|228912351|ref|ZP_04076045.1| Phage integrase [Bacillus thuringiensis IBL 200] gi|228847299|gb|EEM92259.1| Phage integrase [Bacillus thuringiensis IBL 200] Length = 319 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 79/290 (27%), Positives = 125/290 (43%), Gaps = 47/290 (16%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 S+ T Q Y D FL ++ K TI TI++LS+ E+ + + ++K +L++ Sbjct: 34 SERTKQQYLHDLSHFLRYI------KETIGTIQELSHNEMEIYFYEL-SKKYAATTLRKK 86 Query: 92 LSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 + ++ FLKY+ ++ S+ L ++KK + R L ++ ++D E Sbjct: 87 KTVVQQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLYPEEVTQILD--------EL 138 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIVPLLPS 205 K + A +LL GLRI E + +++ S LR+ GKG+K R V + Sbjct: 139 KKSNYFIYATFFLLSTTGLRIEEIATAKWADLVFHSSLNAYLLRVVGKGNKSREVRIFKD 198 Query: 206 VRKAILEYYDLCPFDLNLNIQ-----LPLFRGI--RGKPLNPGV----------FQRYIR 248 AI L L+ LP G R L+ V F RY R Sbjct: 199 TLDAICHVRSLRKQTTELDASSTSAFLPKADGTNYRADYLSSVVAKKIEEINLDFLRY-R 257 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 Q R T HT RH A +L+ G +L+ I+ LGH + TT+ Y Sbjct: 258 QDR--------ITPHTCRHFMANYLMEKGVELKKIRDYLGHESIMTTERY 299 >gi|325001049|ref|ZP_08122161.1| integrase family protein [Pseudonocardia sp. P1] Length = 336 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 70/273 (25%), Positives = 113/273 (41%), Gaps = 18/273 (6%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 S T ++Y D R F + + + ++ + +Y A R + + ++ R Sbjct: 47 SAHTRRAYARDIRDFYTWCHQAGLDPLRLRRVHIDAYAHELAQPQPRTGRPAAESTIARK 106 Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 LS + Y ++ S + ++ PR + + L + + Sbjct: 107 LSTLAGLYAYGVGEELLDRSPLTGVQR-------PRGGQDSVSTGLTRDEVAALLSAAAA 159 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKA 209 AR A++ LL GLRI EALS +++ ++ LR++ KG + PL P V A Sbjct: 160 DGARAHALISLLVHNGLRIDEALSRDVEHLQTERGHQVLRLRRKGGRTATAPLAPPVLHA 219 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST--TAHTLRH 267 + Y L PLF G+ ++ R IR+L R GLP + H+LRH Sbjct: 220 LTVY-------LAGRTSGPLFSTRTGRRVDEPAAWRLIRRLARRAGLPQADRINPHSLRH 272 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 +F T L G LR +Q GH TT+ Y N Sbjct: 273 TFVTAALDAGVALRDVQDGAGHSDPRTTRKYDN 305 >gi|260904385|ref|ZP_05912707.1| phage integrase family protein [Brevibacterium linens BL2] Length = 160 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/138 (32%), Positives = 68/138 (49%), Gaps = 4/138 (2%) Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225 CGLR E L+L +++ + + GKG K R VPL V ++++ Y L + + Sbjct: 4 CGLRSCEVLALHVKDVDIGGRWITVTGKGAKQRRVPLDADV-ASVIDVYLLAERPASDSD 62 Query: 226 QLPLF-RGI-RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283 QL L +G RG+ L + R R G+ H LRH+F T L G DL + Sbjct: 63 QLFLVAKGTHRGQGLTAAGLRTIFRYHRDLTGVA-GGHPHALRHTFGTVLAEAGVDLAVM 121 Query: 284 QSILGHFRLSTTQIYTNV 301 Q++LGH + TT Y ++ Sbjct: 122 QALLGHAHVDTTARYVHL 139 >gi|149908526|ref|ZP_01897188.1| DNA integration/recombination/invertion protein [Moritella sp. PE36] gi|149808360|gb|EDM68297.1| DNA integration/recombination/invertion protein [Moritella sp. PE36] Length = 236 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 60/226 (26%), Positives = 102/226 (45%), Gaps = 29/226 (12%) Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN-ILNMRNLKKSNSLPRALNEKQAL 135 K R +K+ +++ + +++ L + T+ N I +R LK S L +Q Sbjct: 19 KLRLEKVSPKTVNNEQTYVRALFNELTRLGEWTKGNPIEGVRMLKHKQSEMGFLQPEQMT 78 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 +L++ L SH DA + L GC R EA +L ++++ + T + KG+ Sbjct: 79 SLLET--LENSHNK---DALIITKICLSTGC--RWGEAANLRSEHVVKNIVTF-VSTKGN 130 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYL 254 K R VP+ P+ L+ +P G + K N F+ I+ + + Sbjct: 131 KPRSVPISPA-----------------LSNTMPKRTGKLFPKSCNDSTFRTAIKNAK--I 171 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 LP H LRH+FA+H++ NGG +Q ILGH + T Y++ Sbjct: 172 KLPAGQMTHVLRHTFASHVMINGGIFLVLQRILGHASIVDTMKYSH 217 >gi|126664435|ref|ZP_01735419.1| probable integrase/recombinase [Marinobacter sp. ELB17] gi|126668632|ref|ZP_01739584.1| probable integrase/recombinase [Marinobacter sp. ELB17] gi|126626891|gb|EAZ97536.1| probable integrase/recombinase [Marinobacter sp. ELB17] gi|126630761|gb|EBA01375.1| probable integrase/recombinase [Marinobacter sp. ELB17] Length = 346 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 78/320 (24%), Positives = 133/320 (41%), Gaps = 40/320 (12%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLSYTEI-RAFISK-----RRT 80 R LS T+++Y F+ +L I +Q I + +S+ R FI R T Sbjct: 28 RALSPKTIEAYRISLECFVDYL-------IEVQHIQRKDISFDHFERKFIKGWLIWMRET 80 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 ++ R+L L+ +K+FL Y+ + + ++ + + K+ P +K L +N Sbjct: 81 KRYQPRTLTLRLTAVKAFLSYVSREDL----RLVALNDAAKTLKAPTP-PKKPIEYLPEN 135 Query: 141 ---VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDK 196 +L + RN +L LLY R+ E LT + + + L + GK DK Sbjct: 136 ETASILAAFDGSTMKSRRNRMLLILLYETAARVGEITGLTLGELKLTKPAHLTLSGKRDK 195 Query: 197 IRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYL 254 R+VPL + + Y + P NL PLF G+P+ + + + + + Sbjct: 196 SRVVPLGDKTVEHLQVYLNEFYPHWANLPAVRPLFYSRHLGEPIR--LSEDSVSAILKKA 253 Query: 255 G---------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 G +P++ H +R + A L G L I +LGH +STT + + Sbjct: 254 GDLARGTCSSIPVTLHCHMMRKTKAMDLYKQGIPLPIIMQLLGHESMSTTSAFYAFATL- 312 Query: 306 GGDWMMEIYDQTHPSITQKD 325 D M + P I+Q D Sbjct: 313 --DMMRAAMNAATPGISQSD 330 >gi|329926877|ref|ZP_08281280.1| site-specific recombinase, phage integrase family [Paenibacillus sp. HGF5] gi|328938864|gb|EGG35237.1| site-specific recombinase, phage integrase family [Paenibacillus sp. HGF5] Length = 343 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 69/299 (23%), Positives = 127/299 (42%), Gaps = 36/299 (12%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI-----SKRR----- 79 GL K T++ YE + + F+ + + I +S +R F+ RR Sbjct: 36 GLRKRTIRDYE---KHYGYFVKWLRVNHPEAEYIEDVSAAILRDFVLYMKHDARRYDGHK 92 Query: 80 -----TQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 Q+IG D ++ L +K+ L++ ++ + ++ L++ L L ++ Sbjct: 93 YINSDKQRIGLEDTTINIRLRTLKALFNQLERDELIEVNPAGPVKLLRQDVDLTNGLTDE 152 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + +L ++ R+ + L+ GLRISE LSL +I D T I Sbjct: 153 EV-----TAILAQPDRRDFVGFRDYVAICLMLDSGLRISEMLSLRAADI--DFQTRFITL 205 Query: 193 KGD-----KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 GD K R+VP+ V K +L+ D + LF G P+ F + + Sbjct: 206 PGDRNKNRKPRLVPISAQVTKLLLQLIDENRAHFTTD---RLFLSCYGDPVTANHFNKRL 262 Query: 248 RQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + G+ TAH RH++A ++ NG DL ++Q + G + T + Y +++++ Sbjct: 263 KYYGEKAGIEGKKMTAHVYRHTWARSMVLNGADLFTLQKMGGWQDVRTMRRYVQMDTRD 321 >gi|326790575|ref|YP_004308396.1| integrase family protein [Clostridium lentocellum DSM 5427] gi|326541339|gb|ADZ83198.1| integrase family protein [Clostridium lentocellum DSM 5427] Length = 373 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 86/188 (45%), Gaps = 29/188 (15%) Query: 135 LTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI----------- 181 L +DN+ L+ KW R A +L GCGLR SE +LT ++I Sbjct: 171 LMSLDNIQTLIKLYENDKWPLHR--AAFFLAVGCGLRNSEIRALTLKDIDFNLNTITVDK 228 Query: 182 ----MDDQSTLRIQGK--GDKIRIVPLLPS-VRKAILEYYDLCPFDLNLNIQLPLFRGIR 234 DD+ L K G K +I P V KAI E+ D P + I +F + Sbjct: 229 QIGLYDDEKDLFTSTKTSGSKRKIYA--PEFVMKAIKEHIDSMP---AIPINALIFTISK 283 Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 KP+N ++R++ LPL H LRH AT +++N D+ ++ LGH ++T Sbjct: 284 NKPINSHTLSNHLREVLIANDLPL-IRFHDLRHIHATLMINNNMDIATVSKRLGHKSIAT 342 Query: 295 T-QIYTNV 301 T + YT+ Sbjct: 343 TLKFYTHT 350 >gi|265763640|ref|ZP_06092208.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16] gi|263256248|gb|EEZ27594.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16] Length = 165 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 18/155 (11%) Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR---IVPLLPSVRKAILEY 213 SA L+ + CGLRIS+ + L +++ D R+ K + +PL K + E Sbjct: 16 SAYLFSCF-CGLRISDIIGLQWKDVFIDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPER 74 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 D D ++ P + I+ + G+ T HT RH+FAT + Sbjct: 75 GDKTADDHVFDL--------------PSGINQLIKPWAKAAGISKRFTFHTARHTFATMM 120 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 L+ G DL ++ +LGH + TQ+Y + +K D Sbjct: 121 LTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKKDD 155 >gi|298208931|ref|YP_003717110.1| putative transposase [Croceibacter atlanticus HTCC2559] gi|83848858|gb|EAP86727.1| putative transposase [Croceibacter atlanticus HTCC2559] Length = 416 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 52/200 (26%), Positives = 88/200 (44%), Gaps = 28/200 (14%) Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG----- 192 V ++ TSH T R+ ++ C +S + +N+ D I G Sbjct: 232 VQELIKFTSHRTALTQTRD----VFIFACYTGLS---WIDVKNLSQDHIVRGIDGSNWIY 284 Query: 193 ----KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 K D +PLLP K + Y + ++ + LP++ + +Y++ Sbjct: 285 TAREKTDTPVKIPLLPIPEKLLSRYAEKM---MDSELLLPVYSNQKT--------NKYLK 333 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 ++ LG+ T H RH+FAT + LSNG + ++ +LGH +LSTTQIY V Sbjct: 334 EIAIELGIRKKLTFHVARHTFATTVTLSNGVPIETVSKLLGHTKLSTTQIYARVIESKVS 393 Query: 308 DWMMEIYDQTHPSITQKDKK 327 + M ++ D+ I +KK Sbjct: 394 NDMNKLRDELRDKIDINNKK 413 >gi|218690783|ref|YP_002398995.1| Integrase [Escherichia coli ED1a] gi|218428347|emb|CAR09275.2| Integrase [Escherichia coli ED1a] Length = 338 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 24/151 (15%) Query: 153 DARNSAILYLLYGC---GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 D+++S++L + C G R SEA +L + + T + KG K R VP+ Sbjct: 190 DSQSSSLLLIAKICLATGARWSEAENLQSHQVSKYRITY-TKTKGKKNRTVPI------- 241 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 +L +LP RG P F+R ++ R + LP H LRH+F Sbjct: 242 ----------SKDLYEELPKNRGKLFTPCR-KAFERAVK--RAGIDLPEGQCTHVLRHTF 288 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 A+H + NGG++ ++ ILGH + T +Y + Sbjct: 289 ASHFMMNGGNILVLRDILGHSDIKMTMVYAH 319 >gi|302668703|ref|YP_003832528.1| tyrosine recombinase XerC2 [Butyrivibrio proteoclasticus B316] gi|302397043|gb|ADL35946.1| tyrosine recombinase XerC2 [Butyrivibrio proteoclasticus B316] Length = 352 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 67/251 (26%), Positives = 111/251 (44%), Gaps = 21/251 (8%) Query: 86 RSLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 R++ R LS + S F Y+K+RK+ R K + R L E + + V+ Sbjct: 106 RTINRFLSTLSSLFTFYVKRRKLADNPVSAVRRPAVKRKEVNR-LYEGEKSQFLSAVMNG 164 Query: 145 TS--------HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 T HE +W+ R+ I + G+R+SE + L ++ + +LR+ KG Sbjct: 165 TGLTKRQLPYHERQWL--RDYTIARVFLFTGIRVSELVGLDISDVNLREHSLRVVRKGGN 222 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 I V L IL Y ++ L + + LF + + + ++ I++ ++ G Sbjct: 223 IERV-YLDDETDLILREYLAEREEMELTDDETALFISRKKQRIGVRAVEKLIKKYQQ-AG 280 Query: 256 LPL---STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS---KNGGDW 309 LP T H LR +FAT L S GD+ +GH ++TT IY V+ K G + Sbjct: 281 LPSHPNGLTPHRLRATFATDLYSATGDIYRTSKAMGHKSIATTTIYAEVSDKQKKEGRNI 340 Query: 310 MMEIYDQTHPS 320 ++ Y T S Sbjct: 341 LLSSYRDTEES 351 >gi|224538864|ref|ZP_03679403.1| hypothetical protein BACCELL_03760 [Bacteroides cellulosilyticus DSM 14838] gi|224519518|gb|EEF88623.1| hypothetical protein BACCELL_03760 [Bacteroides cellulosilyticus DSM 14838] Length = 330 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 111/247 (44%), Gaps = 29/247 (11%) Query: 67 SYTEIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122 S +IRA+++ K ++ K+ +++R S SF +L++ +S I + +K Sbjct: 95 STEDIRAYLAVFQRKNKSSKVTIDNIRRIFS---SFFAWLEEEDYIIKSPIRRIHKVKTG 151 Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 + L ++ L DN I R+ A++ LL G+R+ E + L ++I Sbjct: 152 TQVKEILTDENIEHLRDN----------CIKIRDLAMIDLLASTGMRVGELVKLDREDIN 201 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN--- 239 ++ + GKG+K RIV + K L+ Y D N + + L KP N Sbjct: 202 FNERECIVFGKGNKERIV-YFNARAKIHLQQYLSTRKDRNKALFVSL-----AKPHNRLQ 255 Query: 240 -PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 GV R +R++ R + + H R + AT + G + +Q +LGH ++ TT Y Sbjct: 256 ISGVETR-LRKIGRQAKI-VRVHPHKFRRTLATMAIDKGMPVEQVQKLLGHVKIDTTMHY 313 Query: 299 TNVNSKN 305 V+ N Sbjct: 314 AMVSQNN 320 >gi|126667017|ref|ZP_01737992.1| phage-related integrase [Marinobacter sp. ELB17] gi|126628423|gb|EAZ99045.1| phage-related integrase [Marinobacter sp. ELB17] Length = 181 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 71/159 (44%), Gaps = 27/159 (16%) Query: 159 ILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 +L +LY G R+SE + + +I + +++R+ GKG K R VPL K I ++ Sbjct: 1 MLTVLYNTGARVSELIGIRVADITLAATASVRLHGKGRKQRTVPLWKETAKEIRQWLKYA 60 Query: 218 PFDLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYLGLPLST-------------TAH 263 +L+++ PL G P+ V +R L L +ST + H Sbjct: 61 ----DLHVEQPLIPNRSGLPMTRTNVAER--------LNLAVSTATKMCPQLAGRRISPH 108 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 T RH+ A HLL G DL I LGH TT Y + Sbjct: 109 TWRHTTAMHLLQAGVDLTVIALWLGHESPVTTHGYVEAD 147 >gi|260889470|ref|ZP_05900733.1| tyrosine recombinase XerD [Leptotrichia hofstadii F0254] gi|260860881|gb|EEX75381.1| tyrosine recombinase XerD [Leptotrichia hofstadii F0254] Length = 134 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 69/134 (51%), Gaps = 9/134 (6%) Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALNEKQ 133 +K + + R++ R +S +++F KYL++ K+ T ++ +N+ +K LP LN Sbjct: 6 TKMSVKPVSKRTINRKISALRTFFKYLQEIKVIETNKAAYINVPKFEKE--LPNVLNRDD 63 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 N L H K R+ I+ LLY GLR E ++L+ I ++ +R+ GK Sbjct: 64 L-----NSLRHVISTEKITGIRDRLIIELLYSSGLRSMELINLSEFMIDIEEREIRVIGK 118 Query: 194 GDKIRIVPLLPSVR 207 GDK RI L+ +R Sbjct: 119 GDKERITFLVKMLR 132 >gi|331663926|ref|ZP_08364836.1| type 1 fimbriae regulatory protein FimB [Escherichia coli TA143] gi|331059725|gb|EGI31702.1| type 1 fimbriae regulatory protein FimB [Escherichia coli TA143] Length = 209 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 74/174 (42%), Gaps = 21/174 (12%) Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT------------PQNIMDDQSTLR 189 LL S + K +R+ ++ L Y GLR+SE LSL Q I + ST+ Sbjct: 14 LLLQSVKQKSCSSRDVCMILLAYFHGLRVSELLSLQLSDLELTTEKIYIQRIKNGFSTVH 73 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 K + I I L +++++ P+ LF GKPL+ F + Sbjct: 74 PLQKEEVIAITNWLNERNSINVKHFNDNPW---------LFVSRTGKPLSRQRFYNIVSA 124 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + GL + H LRH+ L NG D R IQ LGH + T IYT NS Sbjct: 125 AGKNAGLNIKVHPHMLRHACGYSLADNGVDTRLIQDYLGHRNIRHTVIYTASNS 178 >gi|315505957|ref|YP_004084844.1| integrase family protein [Micromonospora sp. L5] gi|315412576|gb|ADU10693.1| integrase family protein [Micromonospora sp. L5] Length = 329 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 67/281 (23%), Positives = 121/281 (43%), Gaps = 18/281 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT-EIRAFISK 77 + WL+N R LS+ T +Y D +L + A + + + +Y E+ + Sbjct: 24 EAWLRN----RRLSEHTRDAYRRDVTGWLTWCAEQAVDPLRATFLDVNAYGRELESTPRG 79 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNSLPRALNEKQAL 135 R + + ++ R LS + S+ +L K + + + + + +S L + Sbjct: 80 RAGRPLTPATVARRLSALSSWYDFLVKLGAVPANPVSAADRPRVDRDHSATVGLTPDE-- 137 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGK 193 VD ++ +T ARN A + LL GLR+ E ++L ++ ++ ++R GK Sbjct: 138 --VDALIAAAEADTGPAAARNRAAVALLADLGLRVGELVALDVSDLGTERGHRSIRFVGK 195 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYIRQL 250 G K+R L P A+ Y + + + PL G L+ R +R+L Sbjct: 196 GGKVRRRALTPGTAYAVDAYLAVRAAAQGVTVPELTGPLLVTATGGRLDRHAVFRLVRRL 255 Query: 251 RRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGH 289 + G+ + H+LRH+FAT S G L +Q +GH Sbjct: 256 AQRAGIAAWAKLSPHSLRHAFATTARSEGVPLEDVQDAMGH 296 >gi|238023317|ref|YP_002907550.1| Phage integrase family protein [Burkholderia glumae BGR1] gi|237880370|gb|ACR32700.1| Phage integrase family protein [Burkholderia glumae BGR1] Length = 564 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 60/203 (29%), Positives = 82/203 (40%), Gaps = 56/203 (27%) Query: 153 DARNSAILYLLYG-CGLRISEALSL-------------TPQNIMDDQSTLRIQGKGDKIR 198 D R + L LL G GLRI EA+++ TP + M LR+ GKG K R Sbjct: 348 DWRVARALVLLMGDAGLRIEEAVTVERGGLQWWPAEDETPASWM-----LRLIGKGSKER 402 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNL----NIQLPLFR--------------GI------- 233 IVPL A+ E++ DL+ +PL G+ Sbjct: 403 IVPLTEDTVAALREHWQDRGLDLDAPGAAADSVPLVAPTVVPPTPASREKFGVTDAGEVT 462 Query: 234 RGKPLNPGVFQRYI-RQLRRYLG-LP----------LSTTAHTLRHSFATHLLSNGGDLR 281 R P +R + R LRR L LP +T+ H RH+F T + G + Sbjct: 463 RAAGYTPRAARRVVTRALRRLLEQLPDWEESARRQLAATSPHAFRHTFGTQSAAAGMAIE 522 Query: 282 SIQSILGHFRLSTTQIYTNVNSK 304 +Q +LGH L TT IY N + Sbjct: 523 VLQQVLGHGSLQTTTIYVNAEQQ 545 >gi|167767086|ref|ZP_02439139.1| hypothetical protein CLOSS21_01604 [Clostridium sp. SS2/1] gi|167711061|gb|EDS21640.1| hypothetical protein CLOSS21_01604 [Clostridium sp. SS2/1] gi|291559577|emb|CBL38377.1| Site-specific recombinase XerD [butyrate-producing bacterium SSC/2] Length = 328 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 55/234 (23%), Positives = 106/234 (45%), Gaps = 25/234 (10%) Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 +++++ KI +++R S SF +L+ +S + + +K +++ ++Q Sbjct: 106 AEKKSSKITIDNIRRIFS---SFFAWLEDEDYIIKSPVRRIHRIKSGSTIKETYTDEQLE 162 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 T+ DN + R+ A++ +L G+R+ E + L ++I D+ + GKGD Sbjct: 163 TMRDNCG----------NLRDLALIDILASTGMRVGELVLLNKEDISFDERECIVFGKGD 212 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLN----LNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 K R+V + K L+ Y D N ++++ P R + G + +R+L Sbjct: 213 KERMV-YFDARTKIHLQNYLNSRVDTNNALFVSLKAPYDR------MKIGGIEVRLRELG 265 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + L + H R + AT + G + +Q +LGH R+ TT Y V N Sbjct: 266 KRLNID-KVHPHKFRRTLATVAIDKGMPIEQLQKLLGHQRIDTTLQYAMVKQSN 318 >gi|302867639|ref|YP_003836276.1| integrase family protein [Micromonospora aurantiaca ATCC 27029] gi|302570498|gb|ADL46700.1| integrase family protein [Micromonospora aurantiaca ATCC 27029] Length = 329 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 67/281 (23%), Positives = 121/281 (43%), Gaps = 18/281 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYT-EIRAFISK 77 + WL+N R LS+ T +Y D +L + A + + + +Y E+ + Sbjct: 24 EAWLRN----RRLSEHTRDAYRRDVTGWLTWCAEQAVDPLRATFLDVNTYGRELESTPRG 79 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNSLPRALNEKQAL 135 R + + ++ R LS + S+ +L K + + + + + +S L + Sbjct: 80 RAGRPLTPATVARRLSALSSWYDFLVKLGAVPANPVSAADRPRVDRDHSATVGLTPDE-- 137 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGK 193 VD ++ +T ARN A + LL GLR+ E ++L ++ ++ ++R GK Sbjct: 138 --VDALIAAAEADTGPAAARNRAAVALLADLGLRVGELVALDVSDLGTERGHRSIRFVGK 195 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLFRGIRGKPLNPGVFQRYIRQL 250 G K+R L P A+ Y + + + PL G L+ R +R+L Sbjct: 196 GGKVRRRALTPGTAYAVDAYLAVRAAAQGVTVPELTGPLLVTATGGRLDRHAVFRLVRRL 255 Query: 251 RRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGH 289 + G+ + H+LRH+FAT S G L +Q +GH Sbjct: 256 AQRAGIAAWAKLSPHSLRHAFATTARSEGVPLEDVQDAMGH 296 >gi|38637709|ref|NP_942683.1| putative integrase/recombinase [Ralstonia eutropha H16] gi|32527047|gb|AAP85797.1| putative integrase/recombinase [Ralstonia eutropha H16] Length = 284 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 71/270 (26%), Positives = 116/270 (42%), Gaps = 23/270 (8%) Query: 10 VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ-TIRQLSY 68 V F L +R + + L +R S T+ SY DT + L+ A+ K ++ Sbjct: 5 VGFPSLVQR-FFTERLMQQRQASPHTISSYR-DTFRLLLRFAYKRLHKPPDHLAFEDINA 62 Query: 69 TEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI---LNMRNLKKSNS 124 + AF++ +T+ I R+ L+ I+SF +Y + I L+M N + Sbjct: 63 PLVTAFLNDLEKTRAISVRTRNLRLTAIRSFFRYAAFETPAYSAQIQRVLSMPNKRYDRR 122 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MD 183 L L + LL + W R+ A+L L GLR+SE LT +++ + Sbjct: 123 LIHFLTRPEV-----KALLAAPDKRTWCGRRDHALLRLGVETGLRVSEMTGLTREDVTLG 177 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 + + + GKG K R+ P AIL+ + P N + LF +RG L+P Sbjct: 178 AGAHIDVMGKGRKQRVTPFSKET-AAILKAWMKEPRTPNSDA---LFPSVRGGHLSPDAV 233 Query: 244 QRYIRQL--RRYLGLPL----STTAHTLRH 267 QR +++ + +G P T H LRH Sbjct: 234 QRLLKKYATQAAMGCPSLRKKRVTPHVLRH 263 >gi|42782202|ref|NP_979449.1| Tn554-related, transposase A [Bacillus cereus ATCC 10987] gi|229021361|ref|ZP_04177991.1| Tn554-related, transposase A [Bacillus cereus AH1273] gi|229024663|ref|ZP_04181108.1| Tn554-related, transposase A [Bacillus cereus AH1272] gi|229112909|ref|ZP_04242439.1| Tn554-related, transposase A [Bacillus cereus Rock1-15] gi|42738127|gb|AAS42057.1| Tn554-related, transposase A [Bacillus cereus ATCC 10987] gi|228670540|gb|EEL25854.1| Tn554-related, transposase A [Bacillus cereus Rock1-15] gi|228736728|gb|EEL87278.1| Tn554-related, transposase A [Bacillus cereus AH1272] gi|228739926|gb|EEL90293.1| Tn554-related, transposase A [Bacillus cereus AH1273] Length = 372 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 59/236 (25%), Positives = 105/236 (44%), Gaps = 31/236 (13%) Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 ISK +K+ + + KSFL ++ K K + N+L ++ +K + +Q Sbjct: 124 ISKDMNEKLMRQIYAGGRTRYKSFLHHINKNKPSI-RNVLKVKEPRKRIQILTKEQVRQT 182 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-----LR 189 T N+ R++ ++ LL+ GLRI EALSL ++ + D LR Sbjct: 183 FTATTNI-------------RDAFLIQLLFETGLRIGEALSLYLEDFIFDYKKGHRIRLR 229 Query: 190 IQGK---GDKIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIR-GKPLN 239 +G+ G K++ V + +++ YD + D+ N RG G+P+N Sbjct: 230 DRGELENGAKLKTGEREIFVSQHLMDLYDDYLYEIIDELDIETNFVFIKLRGRNMGRPMN 289 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 + ++LR+ + + H LRH+ AT D++ +Q LGH ++ TT Sbjct: 290 YSDVESLFKRLRKKTKIDIH--PHLLRHTHATIYYQETKDIKQVQERLGHAQIQTT 343 >gi|299783186|gb|ADJ41184.1| Integrase XerD [Lactobacillus fermentum CECT 5716] Length = 292 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 66/281 (23%), Positives = 121/281 (43%), Gaps = 19/281 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q WL ++G +KLT+ SY D R +L T +T +Q+ + ++ Sbjct: 16 QEWL----TKKGGAKLTIASYLTDLRDTAAYL---TSRGVT--NWQQVDRATLTXYLQSL 66 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + +++R +S ++ F YL+ + ++ + P L ++A L Sbjct: 67 NDKGRRTTTIQRRISSLRRFYXYLQVTGQVNHDPVALLKAKQTPRLAPVGLTPQEADLLP 126 Query: 139 DNVLLHTSHETKWID-ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 D+V K + RN A++ LL G R +E L + +D + + G+ + Sbjct: 127 DHV------PGKGVARERNRALVALLVATGARANELRDLQTGD-LDLELGVVYLGQSSR- 178 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 R+VPL + L Y D + + +F RG+PL+ + + + Sbjct: 179 RLVPLNEQA-QTYLTTYLTARADQSATDEGYVFLNNRGQPLSRQSIWEIVNATGQRANIE 237 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + T +R FA LL++G DL +Q ++GH + TTQ+Y Sbjct: 238 GAVTPQRVRDGFAYRLLAHGADLSLVQQLMGHQSILTTQVY 278 >gi|228962663|ref|ZP_04123966.1| Integrase-recombinase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228797022|gb|EEM44329.1| Integrase-recombinase [Bacillus thuringiensis serovar pakistani str. T13001] Length = 391 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 67/153 (43%), Gaps = 10/153 (6%) Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 N IL L G RI E + +++ D + L+++GKGDK+R + + + + I E Sbjct: 218 NYTILLALASTGARIQELCTTRVKDLHYDGKYWLKVKGKGDKVRELFISEHLYQCICEMR 277 Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266 F L+ PL RG N + + + L S TAHT R Sbjct: 278 RKRGFQTVLDRGDASPLLVNQRGNFYNSKTLSNQVTDMIKKTNLEFLQYRENSVTAHTFR 337 Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298 H+FA + G DL + LGH + TT+IY Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370 >gi|298244848|ref|ZP_06968654.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297552329|gb|EFH86194.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 970 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 7/142 (4%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213 ARN A+L++L G+R +E + ++ +Q LR+QGKG R VPL + Y Sbjct: 769 ARNQAVLWILAETGMRTAEVCGMRLSDVDREQGRLRVQGKGSTQRWVPLGYEGFHYLCLY 828 Query: 214 YDLCPFDLNLNI------QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT-LR 266 D ++ + PLF G PL +LR+ G+ LR Sbjct: 829 LDHHRLKAGQDVKRRRVGEEPLFLSKTGHPLTSNGIALLFGRLRKQAGITRKEVGPVLLR 888 Query: 267 HSFATHLLSNGGDLRSIQSILG 288 +FA L GGDL +++ LG Sbjct: 889 DTFAVRYLQEGGDLLTLRQQLG 910 >gi|291286626|ref|YP_003503442.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] gi|290883786|gb|ADD67486.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] Length = 342 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 71/246 (28%), Positives = 111/246 (45%), Gaps = 42/246 (17%) Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKS-FLKYLKKRKITTESNILN-MRNLKKSNSLPR 127 ++ F + R S+ + IK+ F K ++ K+ N LN + LK +LP+ Sbjct: 102 DLSDFTTHRLKAGYAKTSINIDIRNIKAAFSKAVEWEKLA--QNPLNGFKQLKIDKNLPK 159 Query: 128 ALN----EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 L +K A L DN L R++ Y+L GC R SEAL LT +I Sbjct: 160 FLTFDDLDKFANILGDNPL------------RHAFFFYVLTGC--RRSEALVLTWDDIDF 205 Query: 184 DQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP----LFRG-IRGKP 237 + + I + K + R +P+ S+ Y+L LN P LF G I+G Sbjct: 206 TRMVVHIRKTKNHEARDIPICDSL-------YEL------LNGITPKQGYLFPGKIKGTH 252 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L+ I+ G P H LRH+FA+ L +G L++I+ +LGH + TT+I Sbjct: 253 LDKDTMTHNIKDCLTEAGFP-DMRLHDLRHTFASLLALSGETLQTIRDLLGHSDIRTTEI 311 Query: 298 YTNVNS 303 Y ++ + Sbjct: 312 YAHLTA 317 >gi|328950733|ref|YP_004368068.1| integrase family protein [Marinithermus hydrothermalis DSM 14884] gi|328451057|gb|AEB11958.1| integrase family protein [Marinithermus hydrothermalis DSM 14884] Length = 344 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 65/293 (22%), Positives = 127/293 (43%), Gaps = 34/293 (11%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ---------K 82 S TL++Y R +L + A+ E + + + + + ++ +++ +T Sbjct: 49 SPQTLRTYRVAVRDYLAW-AWPPEAEGPVVPLLKATADDLDRYVADLQTHGGHLPETSAP 107 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ------ALT 136 + ++ L+G+++F + L+ L + + PR ++ L Sbjct: 108 LKPSTIATYLAGVRAFYRALE---------WAGAARLPEGVAAPRDPTPREERRPALPLR 158 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGD 195 L +L H + E + R+ + LL GLRISE + L +++ + L ++ GKG Sbjct: 159 LYRALLEHLAGEEPRV-LRDRVAVRLLGEVGLRISEVIHLKVEDVHLAEGLLVVRRGKGG 217 Query: 196 KIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 K R +PL V++ + + + P + L + L R RG+ ++ ++ + + Sbjct: 218 KQRTLPLPRGVQRDLAAWLRVRAAHAAPGEDTLLVNLG-GRKNRGRAVSDSTLRKTLNRY 276 Query: 251 RRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 R LG P AH LRH+ T DL +LGH ++TT IY ++ Sbjct: 277 YRALGFPARYRGAHMLRHTAGTRFYKATRDLHVTARLLGHSNINTTAIYAKMD 329 >gi|315648604|ref|ZP_07901701.1| integrase family protein [Paenibacillus vortex V453] gi|315275983|gb|EFU39331.1| integrase family protein [Paenibacillus vortex V453] Length = 305 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 71/294 (24%), Positives = 126/294 (42%), Gaps = 22/294 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFL--AFYTEEKITIQTIRQLSYTEIRAFIS 76 Q+++ L L+ TL+ Y D + F+ + A++ EE+I + + T R + Sbjct: 16 QDFIHALTTHEDLNPKTLKEYASDLKHFIGWFETAYHQEEEIIFRIEDVATPTLTRYREA 75 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 ++ ++ ++ R L +K F ++ ++ + + PR + +K+ Sbjct: 76 AQKIMELKPATINRRLITLKRFFEWAVSESRIRRDPSKPVKLVPEEKVSPRQMTDKEEAA 135 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM----DDQSTLRIQG 192 LV S R+ IL +++ GLR E L P +I Q T+R G Sbjct: 136 LVAAAEHGGS-------LRDQTILIVMFHTGLRSMEVCDLAPGDIQIGKRSGQLTVR-SG 187 Query: 193 KGDKIRIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 K +K R VPL + R A+ +Y +L P L + + L + Q+Y++ R Sbjct: 188 KRNKQREVPLNATCRVALEKYLAELPPHSPFLFPSEKTGDRLTERALR-HLIQKYMKAAR 246 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 GL +AH LRH F ++++ L + I+GH L TT IY + Sbjct: 247 -LEGL----SAHDLRHRFG-YVMAENTPLHRLAQIMGHDSLDTTMIYVKATRAD 294 >gi|86130576|ref|ZP_01049176.1| phage integrase family protein [Dokdonia donghaensis MED134] gi|85819251|gb|EAQ40410.1| phage integrase family protein [Dokdonia donghaensis MED134] Length = 417 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 77/147 (52%), Gaps = 16/147 (10%) Query: 162 LLYGC--GLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRI-VPLLPSVRKAILEYYD 215 ++ C G+ + ++LT +N+ MD + + + + K + VPLL + I+ Y+ Sbjct: 252 FVFSCYTGISYVDIMNLTEENLVLGMDGGNWIYTKRQKTKSAVKVPLLGKAEE-IISKYE 310 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274 P LP+ I + LN Y++++ ++G+ + T H RH+FAT + L Sbjct: 311 RHPMTEITGTLLPV---ITNEKLNV-----YLKEVAHFVGIKKNLTFHMARHTFATTITL 362 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV 301 SNG + ++ +LGH +++TTQIY V Sbjct: 363 SNGVPIETVSKLLGHSKIATTQIYARV 389 >gi|295133368|ref|YP_003584044.1| transposase [Zunongwangia profunda SM-A87] gi|294981383|gb|ADF51848.1| putative transposase [Zunongwangia profunda SM-A87] Length = 400 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 84/160 (52%), Gaps = 20/160 (12%) Query: 162 LLYGC--GLRISEALSLTPQNIM----DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215 L+ C GL +A SL ++I+ ++ ++ + K K+ V +LP V KAIL+ Y+ Sbjct: 252 FLFSCYSGLSYGDAKSLEAKHIVTGIDGNKWIVKEREKTGKLFKVAMLPKV-KAILKKYE 310 Query: 216 LCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL- 273 + N++ + LP++ + +Y++ L + + T H RH+FAT + Sbjct: 311 K---EANISGLLLPVYSNQKT--------NQYLKDLAKLAKISKKLTFHVARHTFATTVT 359 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 LS G + ++ +LGH +LSTTQIY+ V + D M +I Sbjct: 360 LSKGIPIETVSKLLGHTKLSTTQIYSRVLDQKLSDDMRKI 399 >gi|288561514|ref|YP_003428920.1| site-specific tyrosine recombinase XerS [Bacillus pseudofirmus OF4] gi|288548146|gb|ADC52028.1| site-specific tyrosine recombinase XerS [Bacillus pseudofirmus OF4] Length = 362 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 78/326 (23%), Positives = 133/326 (40%), Gaps = 48/326 (14%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG---- 84 R LS +L +Y D F IF + E I I+++ + ++ +G Sbjct: 34 RKLSSSSLMNYCHD---FKIFFNWIISESIYQGNIKEVPLEIMEKLTVQQMESFLGFLEY 90 Query: 85 -----DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK-------SNSLPRALNEK 132 + ++ R LS +KS YL+ T + N RN+ +S+ N+ Sbjct: 91 VLENKEITVNRKLSALKSLFNYLQNIAETPDLNPYISRNVMTKIDFNVMKDSIETTANKM 150 Query: 133 QALTLV----DNVLLHTSHETKWID--------------ARNSAILYLLYGCGLRISEAL 174 + L+ + SH+ I+ R++AI+ L+ G GLR+SE + Sbjct: 151 EGKILMGDEYEAFRQFISHDYGQINKNNKKIFNFHILNKERDTAIISLILGSGLRLSEVV 210 Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY-------YDLCPFDLNLNIQL 227 +L +I ++ T R KG+K + V + EY Y + L + Sbjct: 211 NLDLADIDFNKFTARAIRKGNKEQFVYFSKLAMDDLQEYLTVRTERYKVEKGVKALFVSA 270 Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 P+ + L+ ++ + + G P S + H LRHSFAT D+ ++ L Sbjct: 271 PMGPKGTSRRLSARAIEKMVEKYALAYGKP-SLSVHKLRHSFATRYHREINDVPKLRRQL 329 Query: 288 GHFRLSTTQIYTNVNS---KNGGDWM 310 GH + TT IYT++ + KN D M Sbjct: 330 GHSSIQTTMIYTHIKNDDLKNAVDNM 355 >gi|255690107|ref|ZP_05413782.1| mobilizable transposon, int protein [Bacteroides finegoldii DSM 17565] gi|260624389|gb|EEX47260.1| mobilizable transposon, int protein [Bacteroides finegoldii DSM 17565] Length = 429 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 67/135 (49%), Gaps = 10/135 (7%) Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226 GLR S+ L ++I+ D+ ++ K + V +P +A Y LC + Sbjct: 275 GLRHSDIKQLKWRDIVKDKEHYQLHFTQQKTKGVEYMPISDQA----YSLC--GERGDAD 328 Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286 +F G++ +P R +++ G+ T H RH++AT L+NG D+ ++ + Sbjct: 329 RLVFEGLQ----DPSWINRPVKRWVEASGITKHITFHCFRHTYATLQLTNGTDIYTVSKM 384 Query: 287 LGHFRLSTTQIYTNV 301 LGH +++TTQIY + Sbjct: 385 LGHKKVTTTQIYAKI 399 >gi|160945578|ref|ZP_02092804.1| hypothetical protein FAEPRAM212_03107 [Faecalibacterium prausnitzii M21/2] gi|158443309|gb|EDP20314.1| hypothetical protein FAEPRAM212_03107 [Faecalibacterium prausnitzii M21/2] Length = 327 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 56/248 (22%), Positives = 111/248 (44%), Gaps = 25/248 (10%) Query: 64 RQLSYTEIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119 +Q++ ++R +++ +RR+ K+ +++R LS SF +L+ +S + + + Sbjct: 89 QQITTDDLRKYLTDYQTQRRSSKVTIDNIRRILS---SFFSWLEDEDFIVKSPVRRIHKV 145 Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 K + + ++ + DN R+ AI+ LL G+R+ E ++L + Sbjct: 146 KTAKIIKETYTDEALELMRDNCST----------VRDLAIIDLLASSGMRVGELVTLNRE 195 Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKP 237 +I ++ + GKG+K R+V + + Y D + LF ++ + Sbjct: 196 DINFNERECVVFGKGNKERLVYFDARTKIHLQNY-----LDERSDSNPALFVTLKEPHER 250 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L G + +R+L R L L H R + AT + G + +Q +LGH ++ TT Sbjct: 251 LMIGGVETMLRELGRRLKLN-KVHPHKFRRTLATSAIDKGMPIEQVQQLLGHQKIDTTMR 309 Query: 298 YTNVNSKN 305 Y V +N Sbjct: 310 YAMVKQQN 317 >gi|229065157|ref|ZP_04200448.1| Transposition regulatory protein TnpA [Bacillus cereus AH603] gi|228716123|gb|EEL67845.1| Transposition regulatory protein TnpA [Bacillus cereus AH603] Length = 356 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 61/236 (25%), Positives = 109/236 (46%), Gaps = 43/236 (18%) Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 +K+ + R S KSFL ++ + K +I N+ LK+ L ++Q V Sbjct: 114 EKLMKQVFTRGNSRYKSFLHHVNQDK----PSIRNILKLKEPRKRVDTLTKEQ----VQQ 165 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 VL T+ + R++ ++ LL+ GLRI EAL+L ++ + D + KG +IR++ Sbjct: 166 VLQATT------NIRDTFLIQLLFETGLRIGEALALFMEDFVFDHA------KGHRIRLI 213 Query: 201 --------PLLPS------VRKAILEYYD------LCPFDLNLNIQLPLFRGIR-GKPLN 239 +L + V +++++ YD L +L+ N RG GKP+ Sbjct: 214 DRGELENGAMLKTGEREIYVSQSLMDLYDDYLYEVLDELELDSNFVFVKLRGKDVGKPME 273 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 + ++L++ G+ L H RH+ AT D++ +Q LGH ++ TT Sbjct: 274 YWNVESLFKRLKKKTGINLH--PHLFRHTHATIYYQKTKDIKQVQERLGHSQIQTT 327 >gi|298528636|ref|ZP_07016040.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298512288|gb|EFI36190.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 414 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 66/249 (26%), Positives = 112/249 (44%), Gaps = 23/249 (9%) Query: 63 IRQLSYTEIRAF----ISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117 I ++ +T++ AF I K R + RS+ +LS ++ Y I + +++ Sbjct: 140 IGEVFFTKVTAFHLEKIKKEMRDASLSPRSIGYALSVVRQVFCYASDHGIFEGVDPVSLV 199 Query: 118 NLKK-SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 + N R L +A L+D VL +S T I + CG R E SL Sbjct: 200 KMPHYDNRRIRFLTHSEAEILLD-VLCFSSQNT-------HDIALIALHCGPRAGEIFSL 251 Query: 177 TPQNIMDDQSTLRIQGKGDK-IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235 T Q+I Q + + +K +R +P+ VRK + D D + + P G R Sbjct: 252 TWQDIDFSQGLVTFRDTKNKYVRHIPITKRVRKMLERRSD----DRSSALVFPDRNGGRR 307 Query: 236 KPLNPGVFQRYIRQLRRYLGLP---LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 K ++ F+R I++L G+ HTLRH+ A+ L+ G L +++ LGH ++ Sbjct: 308 KKVSKA-FERTIKELGWNKGIDDPRQKVVFHTLRHTCASWLVMAGVPLYTVKEYLGHKQI 366 Query: 293 STTQIYTNV 301 S T+ Y ++ Sbjct: 367 SQTERYAHL 375 >gi|196043090|ref|ZP_03110329.1| transposition regulatory protein TnpA [Bacillus cereus 03BB108] gi|196048087|ref|ZP_03115265.1| transposition regulatory protein TnpA [Bacillus cereus 03BB108] gi|228950293|ref|ZP_04112469.1| Tn554-related, transposase A [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|196021343|gb|EDX60072.1| transposition regulatory protein TnpA [Bacillus cereus 03BB108] gi|196026574|gb|EDX65242.1| transposition regulatory protein TnpA [Bacillus cereus 03BB108] gi|228809380|gb|EEM55825.1| Tn554-related, transposase A [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 372 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 59/236 (25%), Positives = 105/236 (44%), Gaps = 31/236 (13%) Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 ISK +K+ + + KSFL ++ K K + N+L ++ +K + +Q Sbjct: 124 ISKDMNEKLMRQIYAGGRTRYKSFLHHINKNKPSIR-NVLKVKEPRKRIQILTKEQVRQT 182 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-----LR 189 T N+ R++ ++ LL+ GLRI EALSL ++ + D LR Sbjct: 183 FTATTNI-------------RDAFLIQLLFETGLRIGEALSLYLEDFIFDYKKGHRIRLR 229 Query: 190 IQGK---GDKIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIR-GKPLN 239 +G+ G K++ V + +++ YD + D+ N RG G+P+N Sbjct: 230 DRGELENGAKLKTGEREIFVSQHLMDLYDDYLYEIIDELDIETNFVFIKLRGRNMGRPMN 289 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 + ++LR+ + + H LRH+ AT D++ +Q LGH ++ TT Sbjct: 290 YSDVESLFKRLRKKTKIDIH--PHLLRHTHATIYYQETKDIKQVQERLGHAQIQTT 343 >gi|13488150|ref|NP_085857.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|14028106|dbj|BAB54698.1| integrase/recombinase [Mesorhizobium loti MAFF303099] Length = 338 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 75/319 (23%), Positives = 134/319 (42%), Gaps = 43/319 (13%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS---KRRTQ 81 L +RG S T ++Y + F+A +I + L+ I F+ R+ Sbjct: 21 LPRQRGASPHTTRAYRDTLKLLFQFVAQRRGREIADLVLEDLNADTIAGFLDHLESERSN 80 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 R+ +R+ ++SF K+L + +++ N + +LP +++ +T ++ V Sbjct: 81 SAATRNCRRA--ALRSFFKHLLR------NDLDNALRYTRVLALPAKRMKQKPVTYLEAV 132 Query: 142 LLHT--------SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQG 192 + +H+ W R+ +L LY R+SEA L +++ + +R++G Sbjct: 133 DVRAIIGNPDRRTHD-GW---RDHTLLLFLYNSAARVSEATGLLWRDLQLTPPRQVRLRG 188 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG----VFQRYIR 248 KG K R+VP+ A+ L + ++ F +PL + ++ Sbjct: 189 KGRKERLVPIWRETADALGRLRKLSGGADHEHV----FVNRHNQPLTRDGVAYILAKHAA 244 Query: 249 QLRRYLGLPL----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + R G P T H LRHS A LL +G D+ I+ LGH ++TT Y + N K Sbjct: 245 SVAR--GRPRLARDRITPHVLRHSAAVALLQSGTDVTVIRDYLGHSSIATTNRYISTNLK 302 Query: 305 NGGD-----WMMEIYDQTH 318 D W + TH Sbjct: 303 MRRDALETFWKHAGIEATH 321 >gi|298346534|ref|YP_003719221.1| site specific recombinase XerD [Mobiluncus curtisii ATCC 43063] gi|298236595|gb|ADI67727.1| site specific recombinase XerD [Mobiluncus curtisii ATCC 43063] Length = 264 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 54/217 (24%), Positives = 92/217 (42%), Gaps = 34/217 (15%) Query: 89 KRSLSGIK-SFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 +RS G+ F K+L + I +S ++ + + +P E + N T+ Sbjct: 66 RRSAQGVAHQFFKFLVEDGILKDSPAEFLKPVHVPDGVPHPAPESAVRHALQNAPKRTA- 124 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207 + R +A+ CGLR E +L N D + LR++GKG ++R++PL S Sbjct: 125 ----LMVRFAAL------CGLRACEICTLR-GNAWDGE-LLRVKGKGGRVRVIPLQDSTL 172 Query: 208 KAILEYYD--LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 LE L P ++ ++ + G L PGV T H+L Sbjct: 173 IYSLESCPGWLFPGRIDGHLSAQYTAKLLGSALPPGV------------------TGHSL 214 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 RH F T DL ++ +++GH + TT+ Y ++ Sbjct: 215 RHRFGTVAYRATHDLLAVGAVMGHVKTDTTKRYIKLD 251 >gi|251780370|ref|ZP_04823290.1| site-specific recombinase, phage integrase family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084685|gb|EES50575.1| site-specific recombinase, phage integrase family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 398 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 79/181 (43%), Gaps = 37/181 (20%) Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG--------------KGDKIRIVPLLPS 205 L L Y CGLR+ EA ++T +++ + L I K D RI+ L + Sbjct: 203 LQLAYRCGLRLGEAFAITWEDVDFENGKLDINKQVQYKNKYWYFSPPKYDSYRIIDLDNT 262 Query: 206 V-----------RKAILEYYDL-CPFDLNLNIQLPLFRGIR---------GKPLNPGVFQ 244 + RK + Y +L +N Q+ F G G + P V Q Sbjct: 263 IIDILKKYKQQQRKDKIYYGELYTELKINDKKQINEFDGTEIHLINIRENGTYIQPRVMQ 322 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303 + LG+ H+LRH+ AT LLS+G +++++Q LGH +L T +YT+V Sbjct: 323 HCFHIIHHKLGIK-ELDYHSLRHTHATMLLSSGANIKAVQERLGHKKLDMTLDVYTHVTD 381 Query: 304 K 304 K Sbjct: 382 K 382 >gi|163814066|ref|ZP_02205458.1| hypothetical protein COPEUT_00219 [Coprococcus eutactus ATCC 27759] gi|158450515|gb|EDP27510.1| hypothetical protein COPEUT_00219 [Coprococcus eutactus ATCC 27759] Length = 391 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 73/297 (24%), Positives = 127/297 (42%), Gaps = 33/297 (11%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFY-------TEEKITIQTIRQLSYTEIRAFISKRR 79 IE S T Y D + F FL + T + I + +L +I F+ R Sbjct: 46 IENTTSTRTRLGYARDIKIFYEFLCEHNPYFNGKTPKDIKTDDLSRLEAEDIEEFLDAMR 105 Query: 80 -------TQKIGDRSLKRSLSGIKSFLKYLKK--RKITTESNILNMRNLKKSNSLPRALN 130 T G+++LKR LS ++ F YL K R + + ++M + + + N Sbjct: 106 LYEKNGRTYTNGEQALKRKLSALRVFFAYLYKNNRIDSNAAEKVDMPKIHEKKIIRMEPN 165 Query: 131 EKQALTLVDNVLLH---TSHETKWID---ARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 E +DNV T + K+ + R+ A+L L+ G+R+SE + + +I D Sbjct: 166 E--VADFLDNVEYGDGLTERQKKYHEKNKVRDLALLSLMLSTGMRVSECVGIDIHDIDFD 223 Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKPLNP 240 ++I KG K V +A+++Y + L P + N LF + K ++ Sbjct: 224 NMRIKIIRKGGKEAFVYFSDEACEALIKYLEERKKLVPESGHEN---ALFLSSQLKRISV 280 Query: 241 GVFQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + +++ +PL T H LR +F T L D+ + +LGH ++TT+ Sbjct: 281 RSVENIVKKY-SLTSVPLKHITPHKLRSTFGTELYRATDDIYLVADVLGHSDVNTTR 336 >gi|256380351|ref|YP_003104011.1| integrase family protein [Actinosynnema mirum DSM 43827] gi|255924654|gb|ACU40165.1| integrase family protein [Actinosynnema mirum DSM 43827] Length = 398 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 75/166 (45%), Gaps = 28/166 (16%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDD------QSTLRIQG--------KGDKI 197 I+ R + + L GCGLR E L+L+P ++ ++ Q LR+ G KG K Sbjct: 202 IEPRFAIVCPLGAGCGLRQGEILALSPDDVDEERMLLIVQRQLRVVGRRLVFAPPKGGKR 261 Query: 198 RIVPLLPSVRKAILEYYDLCP-FDLNLNIQLP---------LFRGIRGKPLNPGVFQRYI 247 R VPL V +AI E+ L P ++ L + P L G G+ +F + + Sbjct: 262 RTVPLASGVLRAIREHEKLFPSAEVTLPWKTPEGVPTTARLLATGPNGRVYTGDLFHKVV 321 Query: 248 R-QLRRYLGLPLSTTA---HTLRHSFATHLLSNGGDLRSIQSILGH 289 R GL A H LRH +A+ LLS G ++ + LGH Sbjct: 322 WLGAFREAGLIYRNRADGMHALRHFYASTLLSRGVSVKELAEYLGH 367 >gi|294507521|ref|YP_003571579.1| Tyrosine recombinase xerD [Salinibacter ruber M8] gi|294343849|emb|CBH24627.1| Tyrosine recombinase xerD [Salinibacter ruber M8] Length = 360 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 60/244 (24%), Positives = 94/244 (38%), Gaps = 41/244 (16%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S KR LS +KS + K + N+ + S P N++ L + L Sbjct: 105 SQKRKLSAVKSLFTFGTKLRYFAH-------NVGAALSTPSVRNDRAERILSEADLWALL 157 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----------DQSTLRIQGKGDK 196 + + D RN +L L Y G RIS+ L +++ D + GKG K Sbjct: 158 RDER--DLRNHVLLRLFYASGGRISDVEDLRWRDLKDRPDLNGPDGRPGGQVTFFGKGGK 215 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL------ 250 R V L V I+ + + + P+FR +G L+ R +++ Sbjct: 216 TRAVTLYSKVWSLIIRLRENEESEGHGAADDPVFRSQKGGCLSRSQIWRVVKKAAVRAGV 275 Query: 251 -------------RRYLGLPLSTT---AHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 R G P+ T+ H RH+ A+H L G DL ++ LGH + T Sbjct: 276 KLTEKTGPEGAVKRDEEGEPIMTSEVSPHWFRHAHASHALQKGADLELVRETLGHESIET 335 Query: 295 TQIY 298 T+ Y Sbjct: 336 TKTY 339 >gi|293415643|ref|ZP_06658286.1| type 1 fimbriae regulatory protein [Escherichia coli B185] gi|291433291|gb|EFF06270.1| type 1 fimbriae regulatory protein [Escherichia coli B185] Length = 209 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 74/174 (42%), Gaps = 21/174 (12%) Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT------------PQNIMDDQSTLR 189 LL S + K +R+ ++ L Y GLR+SE LSL Q I + ST+ Sbjct: 14 LLLQSVKQKSCSSRDVCMILLAYFHGLRVSELLSLQLSDLELTTEKIYIQRIKNGFSTVH 73 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 K + I I L +++++ P+ LF GKPL+ F + Sbjct: 74 PLQKEEVIAITNWLNERNSLNVKHFNDNPW---------LFVSRTGKPLSRQRFYNIVSA 124 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + GL + H LRH+ L NG D R IQ LGH + T IYT NS Sbjct: 125 AGKNAGLNIKVHPHMLRHACGYSLADNGVDTRLIQDYLGHRNIRHTVIYTASNS 178 >gi|302345835|ref|YP_003814188.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] gi|302149177|gb|ADK95439.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] Length = 330 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 62/244 (25%), Positives = 108/244 (44%), Gaps = 29/244 (11%) Query: 70 EIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 +IRA+++ K ++ K+ +++R S SF +L+ +S + + +K + Sbjct: 98 DIRAYLAVFQRKHKSSKVTIDNIRRIFS---SFFSWLEDEDYIIKSPVRRIHKVKTGTQI 154 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 L ++ L DN R+ A++ LL G+R+ E + L ++I ++ Sbjct: 155 KEVLTDENLEQLRDN----------CTRVRDLAMIDLLASTGMRVGELVKLNREDINFNE 204 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN----PG 241 + GKG+K RIV + K L+ Y D N + + L KP N G Sbjct: 205 RECIVFGKGNKERIV-YFNARAKIHLQQYLAERKDRNKALFVSL-----AKPHNRLQISG 258 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 V R +R++ R L + H R + AT + G + +Q +LGH ++ TT Y V Sbjct: 259 VETR-LRKIGR-LSKIVRVHPHKFRRTLATMAIDKGMPVEQVQKLLGHVKIDTTMHYAMV 316 Query: 302 NSKN 305 N N Sbjct: 317 NQTN 320 >gi|71279488|ref|YP_270656.1| phage integrase family site specific recombinase [Colwellia psychrerythraea 34H] gi|71145228|gb|AAZ25701.1| site-specific recombinase, phage integrase family, truncated [Colwellia psychrerythraea 34H] Length = 74 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 27/41 (65%), Positives = 31/41 (75%) Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 TAHT RHSFAT LL NG D+ ++Q +LGH L TTQIYT V Sbjct: 19 TAHTFRHSFATQLLLNGADISTVQELLGHNDLRTTQIYTYV 59 >gi|320353544|ref|YP_004194883.1| integrase family protein [Desulfobulbus propionicus DSM 2032] gi|320122046|gb|ADW17592.1| integrase family protein [Desulfobulbus propionicus DSM 2032] Length = 311 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 11/172 (6%) Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 L KQ TL+D + S + + LL +R SE L ++ Q + Sbjct: 133 LTPKQIDTLLDYCCVSKSEKL-------YCYVLLLLHTAMRPSEGAGLRWDQVLIGQGMI 185 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 + R VP+ ++RK + E + N + LP +G R +P F+R Sbjct: 186 DLTETKTDPRRVPMTRTIRK-MFERMRVAGEGENGFVFLPPGKGYRDQPHR--YFRRSFD 242 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 RY G+ + T + LRHS A++L+ NG D+R++ I+GH +S T YT+ Sbjct: 243 NACRYAGI-CNFTLYGLRHSAASYLIMNGVDIRTVAEIMGHRNISQTMKYTH 293 >gi|317481251|ref|ZP_07940322.1| phage integrase [Bacteroides sp. 4_1_36] gi|316902584|gb|EFV24467.1| phage integrase [Bacteroides sp. 4_1_36] Length = 355 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 59/252 (23%), Positives = 105/252 (41%), Gaps = 19/252 (7%) Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYL---KKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 + + + + L+ ++SF+ YL R + E+ I ++ +K + +K Sbjct: 80 KNVRNCSNSTCNHRLACLRSFIIYLGHSNPRFLEQENKISEVKRMKTVRKNIVEITKKAM 139 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM----DDQSTLRI 190 L ++ +T R+ A+ L+Y RI+E LSL ++I + + + + Sbjct: 140 KALFSSI-----DQTMVTGKRDLALFTLMYSTATRINEILSLRIRDIQLHEKNIHNCIYV 194 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF---RGIRGKPLNPGVFQRYI 247 GKG K R +PL+ I Y D L F G + K + +R Sbjct: 195 MGKGSKRRTIPLMKDCVNIIKSYIRQFHGDKPTENDLLFFSSHNGNKVKLTQEAISKRLK 254 Query: 248 RQLRRYLG----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 R+ G +P H LR + ATH L G ++ IQ +LGH ++TT Y V++ Sbjct: 255 IYARKANGICAEMPPDIHCHNLRAARATHWLEEGLNIVMIQKLLGHENIATTMNYVAVSN 314 Query: 304 KNGGDWMMEIYD 315 + + + D Sbjct: 315 AQKSEALASLED 326 >gi|315444130|ref|YP_004077009.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] gi|315262433|gb|ADT99174.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] Length = 380 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 54/181 (29%), Positives = 73/181 (40%), Gaps = 23/181 (12%) Query: 144 HTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR------------- 189 H + +W+ A R+S + Y GLR E + L + + R Sbjct: 180 HRAGSKRWLTALRDSIAFKVGYAYGLRRRELVMLDLTDFGPNPHVPRYGDYGAMTVRWAK 239 Query: 190 -IQGKGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNL----NIQLPLFRGIRGKPLNPGV 242 G G + R V +P A+ L+Y+ C L + L+ RG L Sbjct: 240 GTTGSGPRRRTVLTVPEFPWAVELLQYW--CTEGRQLLRTADRSPALWPSERGSRLTINA 297 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 R LR GLP H LRHS+ THLL G D +Q LGH STT +YT+V Sbjct: 298 LGRSFTALRARAGLPPELKLHCLRHSYTTHLLEAGYDPLFVQQQLGHSYASTTALYTSVG 357 Query: 303 S 303 S Sbjct: 358 S 358 >gi|229179599|ref|ZP_04306951.1| Integrase-recombinase [Bacillus cereus 172560W] gi|228603893|gb|EEK61362.1| Integrase-recombinase [Bacillus cereus 172560W] Length = 390 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 67/153 (43%), Gaps = 10/153 (6%) Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 N IL L G RI E + +++ D + L++ GKGDK+R + + + + I E Sbjct: 218 NYTILLALASTGARIQELCTARVKDLHYDGKYWLKVTGKGDKVRELFISEHLYQCICEMR 277 Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266 F L+ + P+F RG N + + + L TAHT R Sbjct: 278 LRRGFQTVLDKGDESPVFINQRGNTYNSKTLSNQVTDMIKKTNLEFLLYRENPVTAHTFR 337 Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298 H+FA + G DL + LGH + TT+IY Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370 >gi|256845130|ref|ZP_05550588.1| integrase/recombinase [Fusobacterium sp. 3_1_36A2] gi|256718689|gb|EEU32244.1| integrase/recombinase [Fusobacterium sp. 3_1_36A2] Length = 328 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 73/294 (24%), Positives = 132/294 (44%), Gaps = 38/294 (12%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTI----RQLSYTEIRAFISKRRTQKIGDRS 87 S+ T++ Y + FL F+ + E +I + + + ++ A+I DR Sbjct: 33 SEKTVKDYMFHLKDFLHFV-YDGENDFSISEVIPLMQDIEKEDVEAYI----VHLFEDRK 87 Query: 88 LKRS-----LSGIKSFLKYLKKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLV 138 LK++ LS +KS K L+ + + + RN++ N L ++++ + + Sbjct: 88 LKKTSVNTILSALKSLYKELESNGLKNPVKYIKLFKVNRNIE--NVLKVSIDDIRKII-- 143 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLR-IQGKGD 195 L E K+ RN ILY L+ G+R E L+L ++ + +D+ + IQ K Sbjct: 144 --GLYKIDSEKKY---RNITILYTLFYTGMRSKELLTLKFKHYLKREDEYFFKLIQTKSG 198 Query: 196 KIRIVPLLPSVRKAILEY--YDLCPFDLNL----NIQLPLFRGIRGKPLNPGVFQRYIRQ 249 K P+ S+ K + EY Y + + L+L + L + PL+ I+ Sbjct: 199 KDVYKPIHKSLVKKLEEYKKYLISMYSLDLKDLDEKYIFLTSVLDNTPLSYRSLNAIIQD 258 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + + +G +S H +RH+ AT L +G D+ I+ LGH T++Y N S Sbjct: 259 MGKMIGKDIS--PHNIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARS 310 >gi|26248739|ref|NP_754779.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli CFT073] gi|26109145|gb|AAN81347.1|AE016764_29 Type 1 fimbriae Regulatory protein fimB [Escherichia coli CFT073] gi|307554410|gb|ADN47185.1| type 1 fimbriae regulatory protein [Escherichia coli ABU 83972] Length = 209 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 74/174 (42%), Gaps = 21/174 (12%) Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT------------PQNIMDDQSTLR 189 LL S + K +R+ ++ L Y GLR+SE LSL Q I + ST+ Sbjct: 14 LLLQSVKQKSCSSRDVCMILLAYFHGLRVSELLSLQLSDLELTTEKIYIQRIKNGFSTVH 73 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 K + I I L +++++ P+ LF GKPL+ F + Sbjct: 74 PLQKEEVIAITNWLNERNSLNVKHFNDNPW---------LFVSRTGKPLSRQRFYNIVSA 124 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + GL + H LRH+ L NG D R IQ LGH + T IYT NS Sbjct: 125 AGKNAGLNIKVHPHMLRHACGYSLADNGVDTRLIQDYLGHRNIRHTVIYTASNS 178 >gi|197285858|ref|YP_002151730.1| phage integrase [Proteus mirabilis HI4320] gi|194683345|emb|CAR44052.1| phage integrase [Proteus mirabilis HI4320] Length = 327 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 107/239 (44%), Gaps = 31/239 (12%) Query: 63 IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI-TTESNILNMRNLKK 121 + Q++ I + ++R + I ++ R L I+ L K + E+ + + LK Sbjct: 98 VSQVTSKSISFYQNERFAKGIKPSTINRELYAIRGIFSQLIKMGLYEAENPFIEAKKLKI 157 Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 + S E LTL + L + E D N A+ L G R EA+ L ++I Sbjct: 158 NAS------EMSYLTLDETRKLLANLEG---DYYNIAVFCL--STGARWGEAMKLKREHI 206 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241 ++++ K K RIVP + K + + +C +L LF + + Sbjct: 207 IENKVRFTYT-KTRKARIVP----ISKELCD--QICKGKKDL-----LFSSVSYQ----- 249 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 VF++ ++ ++ LP H LRH+FATH + NGG + ++Q ILGH L T Y + Sbjct: 250 VFRKILKSVKP--SLPDGQATHVLRHTFATHFMINGGSIITLQRILGHASLKQTMTYAH 306 >gi|296164065|ref|ZP_06846688.1| integrase family protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900613|gb|EFG79996.1| integrase family protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 369 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 57/233 (24%), Positives = 98/233 (42%), Gaps = 35/233 (15%) Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 +R SG K FL +L + I L+ P L Q ++D Sbjct: 140 RRRRSGWKPFLYHLSSGQPERRRTI----KLRTPRQHPTILTAGQVQAILDAC------- 188 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL---------RIQGKGDKIRI 199 I R+ + LL+ G+RI EAL L +++ + L R + K R Sbjct: 189 ---IHLRDRLLWALLWDTGIRIGEALGLRHEDVAAAEGELTVAPRSNDNRARAKSATPRT 245 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-----PGVFQRYIRQLRRYL 254 +P+ P + + +Y DL+ + +F + G+P P V+ +R LRR Sbjct: 246 IPISPQLIRLYADYLHDEYGDLDSDY---VFVNLWGEPFGHPWGYPAVYDLVLR-LRRST 301 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNG 306 G+ H RH++AT LL + + ++LGH ++TT IY +++ ++ Sbjct: 302 GIDFD--PHWYRHTYATRLLRQNTPIEVVSTLLGHSSIATTMDIYGHLSVEDA 352 >gi|171315564|ref|ZP_02904800.1| integrase family protein [Burkholderia ambifaria MEX-5] gi|171099401|gb|EDT44139.1| integrase family protein [Burkholderia ambifaria MEX-5] Length = 343 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 15/147 (10%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 I + G R SEA +LT + + Q + K + R VP+ ++ +L + D Sbjct: 188 IAVVCLSTGARWSEAETLTRSQVRNGQIQF-ARTKSRRNRAVPIDDRLQHRVLAHAD--- 243 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278 RG+R F+ + R L LP H LRH+FA+H + NGG Sbjct: 244 ---------EHGRGVRIFSTAFSAFREAVE--RAGLELPAGQLTHVLRHTFASHFMMNGG 292 Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKN 305 ++ ++Q ILGH L+ T Y +++ ++ Sbjct: 293 NILTLQRILGHANLTMTMRYAHLSPEH 319 >gi|254498877|ref|ZP_05111582.1| putative integrase/recombinase [Legionella drancourtii LLAP12] gi|254351862|gb|EET10692.1| putative integrase/recombinase [Legionella drancourtii LLAP12] Length = 418 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 74/273 (27%), Positives = 118/273 (43%), Gaps = 32/273 (11%) Query: 45 QFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK 104 Q +FL F K I+T RQ+ +I FI R K+++SGI S+L+ K Sbjct: 145 QISLFLDFMG--KRDIKTFRQIQPKDISDFICSL------SRYSKKTISGIASYLRMYFK 196 Query: 105 RKITTESNILNMRNLKKSNSLPR-----ALNEKQALTLVDNVLLHTSHETKWIDARNSAI 159 I ++ S S+P ++ +++ +T + + + +S K R+ A+ Sbjct: 197 FLIYRGDLKNDLSQSVPSVSVPYQAKIPSVWDRELITKLLDTVDRSSPRGK----RDYAM 252 Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCP 218 L L GLR+ + LT NI + + I QGK +PL V A+++Y Sbjct: 253 LLLACRLGLRLGDIRELTLDNIDWEAEMISITQGKTKAPLCLPLTNEVGNALIDYIKFAR 312 Query: 219 FDLNL-NIQLPLFRGIRGKPLNPGV----FQRYIRQLRRYLGLPLSTTAH----TLRHSF 269 + N + L L +P P F +R R G+ + H +LRHS Sbjct: 313 PETNYRQVFLKL-----TQPFTPYSKNTHFYNIVRYWRDLSGIKFRSQQHQGLHSLRHSL 367 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 AT+LL + I ILGH ++TT IY + Sbjct: 368 ATYLLEDNIPFSLIADILGHASMNTTMIYAKAS 400 >gi|229496998|ref|ZP_04390703.1| integrase [Porphyromonas endodontalis ATCC 35406] gi|229316100|gb|EEN82028.1| integrase [Porphyromonas endodontalis ATCC 35406] Length = 384 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 74/294 (25%), Positives = 125/294 (42%), Gaps = 32/294 (10%) Query: 31 LSKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS-- 87 +S TLQ Y R FL FL Y I + +L+YT IR F RT +G + Sbjct: 104 VSAATLQKYNVCRRHFLEFLQNDYRRADIKLS---ELTYTVIREFDIYLRTA-VGQNANT 159 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTLVDNVLLHTS 146 +++ K+ + +K + LN R +L+ N R L D ++ + Sbjct: 160 ATKTMKTFKTIVILGQKMGVLHHDPFLNHRFHLEPVN---RGF-------LTDEEIMKIA 209 Query: 147 HETKWIDARNSAILYLLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPL 202 ++ I ++ C GL + +LTP NI +DD+ + + + + L Sbjct: 210 NKDFGIQRLELVRDVFIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVEANVL 269 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 L + K I+ Y + LF + + N Y++++ G+ + T Sbjct: 270 LLDIPKRIIAKYSGKTYR-----DGKLFPILTNQKTNA-----YLKEIADLCGVKKNLTF 319 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 H RH+FAT LS G + S+ +LGH + TTQIY + +K M ++ D+ Sbjct: 320 HLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQLADK 373 >gi|120599713|ref|YP_964287.1| phage integrase family protein [Shewanella sp. W3-18-1] gi|120559806|gb|ABM25733.1| phage integrase family protein [Shewanella sp. W3-18-1] Length = 339 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 23/143 (16%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 ++ + G R SEA SL +++++ T I+ KG K R VP + KA+ + Sbjct: 199 VVKICLSTGCRWSEAESLRGSQVVNNRITF-IKTKGKKNRTVP----ISKALAD------ 247 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNG 277 ++P RG PL + + + ++R L P H LRH+FA+H + NG Sbjct: 248 -------EIPQSRG----PLFSSCRKAFAQAIKRTGLTFPEGQMTHILRHTFASHFMMNG 296 Query: 278 GDLRSIQSILGHFRLSTTQIYTN 300 G++ ++ ILGH + T Y + Sbjct: 297 GNILVLKQILGHADIKETMRYAH 319 >gi|224367178|ref|YP_002601341.1| Phage integrase/recombinase family protein [Desulfobacterium autotrophicum HRM2] gi|223689894|gb|ACN13177.1| Phage integrase/recombinase family protein [Desulfobacterium autotrophicum HRM2] Length = 301 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 70/285 (24%), Positives = 127/285 (44%), Gaps = 31/285 (10%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 ++ +Y+ R FL FL + E++ R +++ + AF + Q R++ LS Sbjct: 22 SVDTYDRAIRTFLDFLGISSPEEL-----RLITHGHVIAFKKFLQDQGRSARTINNRLSA 76 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--LLHTSHETKWI 152 I S +L +++ +N+ K + + E + LT D V LL++ +K Sbjct: 77 ISSLFNHLIDQQVVK----INVAQGVKRMPVNASRVEAKVLT-PDEVRNLLNSPDLSKLQ 131 Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKAI 210 R+ AIL L+ G R+SE SL ++ ++Q L KG K + + ++ A+ Sbjct: 132 GLRDRAILSTLFFTGCRVSEVCSLKIKDFYEEQGFFVLDFWVKGGKRNRMAINQELQIAL 191 Query: 211 LEYY-------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-RRY---LGLPLS 259 +Y D F + LP+ G + + +R I L +Y +G+ Sbjct: 192 DQYLTDAGHGPDPASF-----LFLPVKSGYKASDPKRNLSRRTIDHLFNKYANTIGIA-G 245 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 T H+ R +F T L N + ++Q +GH ++ TTQ+Y +K Sbjct: 246 ITPHSARATFITQALENNCPIEAVQKTVGHAQIKTTQMYDKRTAK 290 >gi|298531267|ref|ZP_07018667.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298508877|gb|EFI32783.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 338 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 75/291 (25%), Positives = 119/291 (40%), Gaps = 27/291 (9%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 Q L +G+S T+ +Y FL F + I I LS I F+ + + Sbjct: 13 QYLPRTKGVSSNTILAYRHTFSLFLPFASKTLGRDINSLEIEHLSTQLILDFLDHLESDR 72 Query: 83 IGD-RSLKRSLSGIKSF---LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R+ L+ KS +++L I+++ + L L ++ L ++ Sbjct: 73 NNSARTRGHRLAVFKSLARMIRFLYPEHKLLADRIISIPQKRFPKKLAAFLTHEEVLLVL 132 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D++ L S R+ I++LLY G R E+ SL + TL I GKG++ R Sbjct: 133 DSINLKKSGA-----FRDYTIIHLLYNSGARAEESASLRLDYFDPHKKTLAILGKGNRYR 187 Query: 199 IVPLLPSVRKAILEY---YDLCPFDLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYL 254 + L P + + Y Y P L+ N LF R + G++ R R+YL Sbjct: 188 QIELWPKTVQLMSMYIQKYRPRPKPLHQNT---LFLNQRRQGFTRNGIY----RLCRKYL 240 Query: 255 GLPLSTT-------AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 L H RHS A ++L G L I++ LGH L +T +Y Sbjct: 241 SLVFEENRFQGLNPVHCFRHSCAINMLGTGFSLTDIKNHLGHENLQSTMVY 291 >gi|300117727|ref|ZP_07055505.1| Tn554-related, transposase A [Bacillus cereus SJ1] gi|298724894|gb|EFI65558.1| Tn554-related, transposase A [Bacillus cereus SJ1] Length = 372 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 55/215 (25%), Positives = 97/215 (45%), Gaps = 31/215 (14%) Query: 96 KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155 KSFL ++ K K + N+L ++ +K + +Q T N+ R Sbjct: 145 KSFLHHINKNKPSIR-NVLKVKEPRKRIQILTKEQVRQTFTATTNI-------------R 190 Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQST-----LRIQGK---GDKIRIVPLLPSVR 207 ++ ++ LL+ GLRI EALSL ++ + D LR +G+ G K++ V Sbjct: 191 DAFLIQLLFETGLRIGEALSLYLEDFIFDYKRGHRIRLRDRGELENGAKLKTGEREIFVS 250 Query: 208 KAILEYYD------LCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLST 260 + +++ YD + D+ N RG G+P+N + ++LR+ + + Sbjct: 251 QHLMDLYDDYLYEIIDELDIETNFVFIKLRGRNMGRPMNYSDVESLFKRLRKKTKIDIH- 309 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 H LRH+ AT D++ +Q LGH ++ TT Sbjct: 310 -PHLLRHTHATIYYQETKDIKQVQERLGHAQIQTT 343 >gi|228943437|ref|ZP_04105881.1| Tyrosine recombinase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228976308|ref|ZP_04136779.1| Tyrosine recombinase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228783412|gb|EEM31520.1| Tyrosine recombinase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816217|gb|EEM62398.1| Tyrosine recombinase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 357 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 70/304 (23%), Positives = 127/304 (41%), Gaps = 42/304 (13%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK---------RRTQKIGD 85 TL +Y D R F +L +E+ I + I+ +S++++ K + Q + + Sbjct: 43 TLLNYVYDFRVFFNWLL--SEQIIEFKPIKDISFSDLENLKKKDVENFMRFLKLQQNMQN 100 Query: 86 RSLKRSLSGIKSFLKYL------------------KKRKITTESNILNMRNLKKSNSLPR 127 S+ R +S +KS KYL K +I + LN R + + + Sbjct: 101 SSVNRKISALKSLFKYLTSLSENEDGECYFYRNVMAKIEIHKDKETLNARAKRMRSKIFH 160 Query: 128 ALNEKQALTLV--DNVLLHTSHETKWI---DARNSAILYLLYGCGLRISEALSLTPQNIM 182 ++++ L V ++ T H+ + R+ AIL L G G+R+SE L ++I Sbjct: 161 NDDDQEFLNYVKYEHEKALTKHQLFYFLRDKERDVAILSLFLGSGIRVSELADLRMEDIN 220 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKP 237 + + + KG+K V + P K + +Y ++ P N+ L ++ +P Sbjct: 221 LKERLIDVIRKGNKEDSVWITPIALKDLEKYMEIRDNKYAPGKELQNVFLSKYKHT-AQP 279 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L+ Q + + + G +S H LRH+ A L D + LGH T + Sbjct: 280 LSVRAIQDIVEKYTKAFGKKMS--PHKLRHTLANKLYMEEKDSLQVMQQLGHTSQDTALL 337 Query: 298 YTNV 301 YT + Sbjct: 338 YTQL 341 >gi|326204540|ref|ZP_08194397.1| integrase family protein [Clostridium papyrosolvens DSM 2782] gi|325985333|gb|EGD46172.1| integrase family protein [Clostridium papyrosolvens DSM 2782] Length = 279 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 10/143 (6%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLC 217 ++ +L LRISEALSL ++ LR++ GKG+K RIV + + + +Y L Sbjct: 133 VISVLEMTALRISEALSLKISDVNLTARELRVRNGKGNKQRIVYINDQLADILKDYIKLY 192 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 D LF G +G PLN V + + + L T H LRH + ++ L N Sbjct: 193 QPDS------WLFPGRKG-PLNRTVVNKVFAKYKNKTSDSL--TPHQLRHHWCSNALEND 243 Query: 278 GDLRSIQSILGHFRLSTTQIYTN 300 + I SI GH + T +YTN Sbjct: 244 FTVAEIASIAGHSNIHTILLYTN 266 >gi|21674396|ref|NP_662461.1| integrase/recombinase-related protein [Chlorobium tepidum TLS] gi|21647577|gb|AAM72803.1| integrase/recombinase-related protein [Chlorobium tepidum TLS] Length = 86 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 27/46 (58%), Positives = 34/46 (73%) Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 T H LRHS+ATHLL +G DLR IQ +LGH TT+IYT+V+ K+ Sbjct: 30 VTLHWLRHSYATHLLESGTDLRYIQELLGHKSSKTTEIYTHVSQKS 75 >gi|229552222|ref|ZP_04440947.1| site-specific tyrosine recombinase XerS [Lactobacillus rhamnosus LMS2-1] gi|229314408|gb|EEN80381.1| site-specific tyrosine recombinase XerS [Lactobacillus rhamnosus LMS2-1] Length = 358 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 66/319 (20%), Positives = 130/319 (40%), Gaps = 56/319 (17%) Query: 54 TEEKITIQTIRQLSYTEIRAFIS--------KRRTQKIGDRSLKRSLSGIKSFLKYLKKR 105 + + + ++T+ +LS + +AF++ +++ RS+ L GIK+ ++L + Sbjct: 50 SPQNVPLETLERLSLRDAQAFVAYLLERPSKTHPNKRMTRRSVALRLVGIKALYRFLTEE 109 Query: 106 KITTES-------NILNMRNLKKSNSLPRALNEK-QALTLVDNVLLHTSHETKWID---- 153 N+ N LK N K Q + VD + +W+D Sbjct: 110 SEPNADGEPYFYRNVWNKVKLKTHAETTTYRNHKLQEMLFVDG---EDARFLQWLDQQYA 166 Query: 154 ---------------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG---D 195 RN AI+ LL+G G+R+SE +++ +++ D+ T+++ KG D Sbjct: 167 QQLPSKPRAYFEATKERNLAIIALLFGSGVRVSELVNMNLEDLNMDRHTVQVVRKGNFQD 226 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-------PGVFQRYIR 248 ++ + A L+ PLF G+ +N F+RY Sbjct: 227 RVNFADWIDPYLTAYLK--SRTAMIGQQKPTSPLFVTQIGQMVNRIRQNTIEAFFKRYTT 284 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 R +T H RH+ T++ + D++ + LG S T +Y N++ K+G Sbjct: 285 AYGR------PSTPHKARHTLGTNIYTVTKDVQQVADQLGQTTTSATDLYINLSDKSGKA 338 Query: 309 WMMEIYDQTHPSITQKDKK 327 + E+ + ++ Q ++ Sbjct: 339 ALREVSETAAKALDQHPQQ 357 >gi|269929227|ref|YP_003321548.1| integrase family protein [Sphaerobacter thermophilus DSM 20745] gi|269788584|gb|ACZ40726.1| integrase family protein [Sphaerobacter thermophilus DSM 20745] Length = 335 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 8/164 (4%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDL 216 A++ LY G+R+SE L ++I T I + KG K R V +A++ Y+ Sbjct: 164 AMILFLYRTGVRVSELCGLRRRDIQLADGTASIYRAKGGKSRTVLFDSETAEALVAYW-A 222 Query: 217 CPFDLNLNI-QLPLFRG-----IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 D + P F G + G+ ++P + + QL G+ T H+ RH A Sbjct: 223 ARGDSGRGVGAFPAFSGRDKVGVPGRAISPRTVEHIVAQLCVAAGVENPITPHSFRHGLA 282 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 T L+ ++Q+ILGH +TT+IY + + + E + Sbjct: 283 TELVRRRVRESTVQTILGHASPTTTRIYVHKVAAEVAEEYQEAF 326 >gi|260642635|ref|ZP_05416696.2| integrase [Bacteroides finegoldii DSM 17565] gi|260621236|gb|EEX44107.1| integrase [Bacteroides finegoldii DSM 17565] Length = 406 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 78/154 (50%), Gaps = 15/154 (9%) Query: 166 CGLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRI-VPLLPSVRKAILEYYDLCPFDLN 222 CGL + LT +NI +D++ + I + ++ +PLL + + IL+ Y D Sbjct: 255 CGLAYIDVAHLTQENIITLDNRPWIIINRQKTNVQSNIPLL-EIPQMILDKYKGKTKD-- 311 Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282 N LP+ + + +N Y++++ G+ + H RH+FAT LLS G + S Sbjct: 312 -NRLLPV---LSNQKINA-----YLKEIADLCGIKKRLSYHLARHTFATMLLSKGVPIES 362 Query: 283 IQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + +LGH + TTQIY + +K MM++ D+ Sbjct: 363 VSKMLGHTNIKTTQIYARITNKKIEQDMMQVADK 396 >gi|167772512|ref|ZP_02444565.1| hypothetical protein ANACOL_03890 [Anaerotruncus colihominis DSM 17241] gi|167665615|gb|EDS09745.1| hypothetical protein ANACOL_03890 [Anaerotruncus colihominis DSM 17241] Length = 305 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 11/149 (7%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS-VRKAIL 211 + R S +L + G+R+SE L +T + + ++ +R +GK I LLP +R+A+ Sbjct: 147 NERLSLVLQTICSTGIRVSELLFITAEAVRGGRAVVRCKGKTRYI----LLPERLRRALS 202 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFA 270 Y P+F GKPL+ R ++ L + G+ H LRH FA Sbjct: 203 AY-----LAKQKRAAGPVFITRTGKPLDRSNIWRDMKALCKRAGVKAGKVFPHNLRHLFA 257 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYT 299 S DL + ILGH ++TT+IYT Sbjct: 258 RTFYSLEKDLSRLADILGHTNVATTRIYT 286 >gi|49146367|ref|YP_025475.1| putative site-specific recombinase [Caedibacter taeniospiralis] gi|40458335|gb|AAR87083.1| putative site-specific recombinase [Caedibacter taeniospiralis] Length = 282 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 56/240 (23%), Positives = 110/240 (45%), Gaps = 19/240 (7%) Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 +++ T++R + S +++ R + ++SF+ +L I +N + L K N Sbjct: 49 KITTTDLRQYKSMLIDHPFKPKTINRRIGSLRSFINWL--WDIGEINNKFPLPKLVKENQ 106 Query: 125 -LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM- 182 P L++ Q L+ H ++ + R+++I+ + G+R+ E ++L ++ Sbjct: 107 PTPMWLDKNQQHALM-------RHLERYGNERDASIISIFMNTGMRVQEFVNLKWIDVTL 159 Query: 183 -DDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240 D + + I K +K R +PL R A ++ F + + +G RG Sbjct: 160 SDKKGIIMIRHSKANKYREIPLNKDARYAFVK----LGFKTHAGSDEYVLQGQRGNITTR 215 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 G+ Q I++ Y L + H LRH+F +L++ G L + + GH L TT+IY + Sbjct: 216 GI-QMMIKRRVAYTDLDY-LSPHMLRHTFCKNLVNAGVSLEKVAVLAGHETLETTKIYCH 273 >gi|258650728|ref|YP_003199884.1| integrase [Nakamurella multipartita DSM 44233] gi|258553953|gb|ACV76895.1| integrase family protein [Nakamurella multipartita DSM 44233] Length = 371 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 71/303 (23%), Positives = 133/303 (43%), Gaps = 43/303 (14%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 WL +++ + + + T +YE + R ++ +I + + QLS ++R I R Sbjct: 76 EWLTHMK--QHVRRSTWVAYESNARLHIV-------PRIGRKKLSQLSVRDVRLMIDGLR 126 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 G R+++ + +++ L++ + ++ T N+ M +++ P K+ L++ + Sbjct: 127 KDGKGKRTVQYVHATLRAALEHAYREELVTR-NVAKMVRVERPTPTP-----KEPLSVAE 180 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-------RIQG 192 L T+ D + A+ ++ GLR SE L N+ + TL R+ G Sbjct: 181 ARRLLTATR----DDEDHALWVVMLLLGLRRSEVCGLRWDNVDLENRTLSVTHSVQRVDG 236 Query: 193 KGDKI--------RIVPLLPSVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 K ++ R VPL V +A++ + + P L + +F G P+ P Sbjct: 237 KLRELPTKTRRSTRTVPLPAMVHQALVTHRAAMMPTSQYLPEPVYVFGTKIGTPMEPRNL 296 Query: 244 QRYIRQLRRYLGL---PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYT 299 R L G+ PL H LRHS + LL+ G R++ I+GH + T +Y Sbjct: 297 TRRWVTLAERQGIRRVPL----HALRHSCVSLLLAQGVHPRTVMEIVGHSAIEMTMNVYG 352 Query: 300 NVN 302 +VN Sbjct: 353 HVN 355 >gi|206972947|ref|ZP_03233869.1| integrase family protein [Bacillus cereus AH1134] gi|206731831|gb|EDZ49031.1| integrase family protein [Bacillus cereus AH1134] Length = 390 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 67/153 (43%), Gaps = 10/153 (6%) Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 N IL L G RI E + +++ D + L++ GKGDK+R + + + + I E Sbjct: 218 NYTILLALASTGARIQELCTARVKDLHYDGKYWLKVTGKGDKVRELFISEHLYQCICEMR 277 Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266 F L+ + P+F RG N + + + L TAHT R Sbjct: 278 LRRGFQTVLDKGDESPVFINQRGNTYNSKTLSNQVTDMIKKTNLEFLLYRENPVTAHTFR 337 Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298 H+FA + G DL + LGH + TT+IY Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370 >gi|282858446|ref|ZP_06267625.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] gi|282588762|gb|EFB93888.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] Length = 345 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 78/318 (24%), Positives = 141/318 (44%), Gaps = 51/318 (16%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 + + I+R L L++Y+ L L Y ++K + I LS + +AFI Sbjct: 62 ERIGIDRALKTFKLRTYQ------LSLLREYVQKKHKVSDI-PLSQLD-KAFIEGFEYYL 113 Query: 83 IGDRSLKRS-LSGIKSFLKYLKKRKITTESNILNMR-----NLKKSNSLPRALNEKQALT 136 DR LKRS +S S L+ + + + + +LN + ++ PR++ +++ Sbjct: 114 TIDRRLKRSSISSTVSTLQTIVR--MAVKKGVLNFYPFLGYSYERPKGEPRSITKEELEH 171 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKG 194 ++D E +W + R L++ + C GL IS+ +L +NI+ ++ L I+G+ Sbjct: 172 IIDL-------EIEWENYRIVRDLFV-FSCFTGLAISDVRNLREENIVTEEGKLCIKGRR 223 Query: 195 DKIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL----NPGVFQRYI 247 K + V +LP + Y RGIR + + + Sbjct: 224 IKTKTPYRVQVLPPALTIMNRY-----------------RGIRAGFVFDVPTTDIVLNGM 266 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 ++R +G+ T H RH+FA+ + LS G + ++ +LGH L TTQ+Y V+S+ Sbjct: 267 HYIQRNIGMETPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERI 326 Query: 307 GDWMMEIYDQTHPSITQK 324 M I + + T K Sbjct: 327 HRDMQAIQQRIQDTFTLK 344 >gi|229073564|ref|ZP_04206686.1| Integrase-recombinase [Bacillus cereus F65185] gi|228709566|gb|EEL61618.1| Integrase-recombinase [Bacillus cereus F65185] Length = 390 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 67/153 (43%), Gaps = 10/153 (6%) Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 N IL L G RI E + +++ D + L++ GKGDK+R + + + + I E Sbjct: 218 NYTILLALASTGARIQELCTARVKDLHYDGKYWLKVTGKGDKVRELFISEHLYQCICEMR 277 Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266 F L+ + P+F RG N + + + L TAHT R Sbjct: 278 LRRGFQTVLDKGDESPVFINQRGNTYNSKTLSNQVTDMIKKTNLEFLLYRENPVTAHTFR 337 Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298 H+FA + G DL + LGH + TT+IY Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370 >gi|158340897|ref|YP_001522065.1| tyrosine recombinase XerC [Acaryochloris marina MBIC11017] gi|158311138|gb|ABW32751.1| tyrosine recombinase XerC [Acaryochloris marina MBIC11017] Length = 351 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 73/150 (48%), Gaps = 3/150 (2%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR-IVPLLPSVRKAILE 212 +R+ A+L LL+ GLR SE + ++ +Q L I GKG R + L S AI E Sbjct: 171 SRDFAMLTLLWEAGLRRSELVGCDVRHFDSEQKRLSILGKGRNEREWIDLTESGVLAISE 230 Query: 213 YYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS-FA 270 + +L + L + + L R G L+ R +R L + G+ + H +RHS Sbjct: 231 WLELREVYGLTEPLFISLDRANWGSRLSGTSVYRIVRALAKKAGVSENFGPHKVRHSGTT 290 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 T+L GGDLR Q+ H L+T + Y + Sbjct: 291 TYLEMTGGDLRGAQAYSRHANLNTLKFYDD 320 >gi|145301497|ref|YP_001144336.1| resolvase [Aeromonas salmonicida subsp. salmonicida A449] gi|142856379|gb|ABO92588.1| resolvase [Aeromonas salmonicida subsp. salmonicida A449] Length = 256 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 82/170 (48%), Gaps = 30/170 (17%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-------TL--RIQGKG-----DKI- 197 D + ++ L+ G RI+EAL+LTP + D TL R +GKG D + Sbjct: 69 DLQRRVLIATLWNTGARINEALALTPGDFELDGGRPFVVLRTLKQRSRGKGRPRAGDAVK 128 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ----LR-R 252 R+VPLL V + Y + L RG R P+ + ++++ LR R Sbjct: 129 RLVPLLDPVFAQLAREYLAT---------VKLARGARIWPVTDQTVRNWLKEADTALRGR 179 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNV 301 + L + T H RH+FA HLL G ++ +Q+ LGH L +T++YT V Sbjct: 180 GVHLVVPLTPHVFRHAFAMHLLLQGNLHIKRLQAYLGHRSLKSTEVYTQV 229 >gi|320450087|ref|YP_004202183.1| transposase [Thermus scotoductus SA-01] gi|320150256|gb|ADW21634.1| transposase [Thermus scotoductus SA-01] Length = 380 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 79/324 (24%), Positives = 129/324 (39%), Gaps = 50/324 (15%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + WL E+ L+ TL +Y + FL +L + +Q IR L +IR + + Sbjct: 71 EAWLAR--KEKSLAAKTLANYRREVGYFLKYLG-----QKRLQDIRPL---DIRQALDRM 120 Query: 79 RTQKIGDRSLKRSLSGIKSFLKY-----LKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 + +G R+ K++L +++ K L R T + R K SL +E + Sbjct: 121 AAEGLGVRAQKKALLHLRALFKEALGLELVARDPTAAVRLKAERRPKAGRSL--EPHEAE 178 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-- 191 AL + W L L GLR EAL L +I + TL ++ Sbjct: 179 ALLAAFDA---------WPTWGVGMALRLCLALGLRAGEALGLKWGDIDLEAGTLSVRRA 229 Query: 192 -----GKGD--------KIRIVPLLPSV------RKAILEYYDLCPFDLNLNIQLPLFRG 232 G+G R +P+ + R L L P DL P + Sbjct: 230 WTCLGGRGHLTTPKTSRAQRTIPVPRATLGRLRDRWETLVAQGLRPKDLKEWWVFPSEKD 289 Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 +PLNP +R++ LG+P H LRHS+ + LL+NG L + +GH Sbjct: 290 P-SRPLNPHSLNHALRKMTAKLGIP-PVRVHDLRHSYGSLLLANGAPLELVAERMGHASP 347 Query: 293 STT-QIYTNVNSKNGGDWMMEIYD 315 + T +Y ++ + W+++ D Sbjct: 348 NVTLSVYRHLLAHERTAWVVDPED 371 >gi|221209968|ref|ZP_03582949.1| phage integrase [Burkholderia multivorans CGD1] gi|221170656|gb|EEE03122.1| phage integrase [Burkholderia multivorans CGD1] Length = 416 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 78/192 (40%), Gaps = 34/192 (17%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM-------DDQSTLRIQGKGDKIRIVPLLPSVR 207 R + LLY GLRI+EA T D+ L + GKG + R+VP + Sbjct: 227 RARWVFTLLYLGGLRITEAAETTMGRFFCRRDASGRDRWWLDVTGKGGRRRLVPATDELM 286 Query: 208 KAILEY---YDLCPF---DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL--- 258 + Y + L P D + + LP G +PL R ++Q+ R+ L Sbjct: 287 TELARYRRAHGLAPLPVADEDTPLVLPF--GQARRPLTRAALHRIVKQVFRHAADRLRAQ 344 Query: 259 ------------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 +AH LRHS +H+ DLR ++ LGH L+TT Y + + Sbjct: 345 GDAGAEQARVLEQASAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHADD--- 401 Query: 307 GDWMMEIYDQTH 318 DW ++ H Sbjct: 402 -DWRHRETEEKH 412 >gi|258539633|ref|YP_003174132.1| site-specific tyrosine recombinase XerS [Lactobacillus rhamnosus Lc 705] gi|257151309|emb|CAR90281.1| Tyrosine recombinase xerC [Lactobacillus rhamnosus Lc 705] Length = 370 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 66/319 (20%), Positives = 130/319 (40%), Gaps = 56/319 (17%) Query: 54 TEEKITIQTIRQLSYTEIRAFIS--------KRRTQKIGDRSLKRSLSGIKSFLKYLKKR 105 + + + ++T+ +LS + +AF++ +++ RS+ L GIK+ ++L + Sbjct: 62 SPQNVPLETLERLSLRDAQAFVAYLLERPSKTHPNKRMTRRSVALRLVGIKALYRFLTEE 121 Query: 106 KITTES-------NILNMRNLKKSNSLPRALNEK-QALTLVDNVLLHTSHETKWID---- 153 N+ N LK N K Q + VD + +W+D Sbjct: 122 SEPNADGEPYFYRNVWNKVKLKTHAETTTYRNHKLQEMLFVDG---EDARFLQWLDQQYA 178 Query: 154 ---------------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG---D 195 RN AI+ LL+G G+R+SE +++ +++ D+ T+++ KG D Sbjct: 179 QQLPSKPRAYFEATKERNLAIIALLFGSGVRVSELVNMNLEDLNMDRHTVQVVRKGNFQD 238 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-------PGVFQRYIR 248 ++ + A L+ PLF G+ +N F+RY Sbjct: 239 RVNFADWIDPYLTAYLK--SRTAMIGQQKPTSPLFVTQIGQMVNRIRQNTIEAFFKRYTT 296 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 R +T H RH+ T++ + D++ + LG S T +Y N++ K+G Sbjct: 297 AYGR------PSTPHKARHTLGTNIYTVTKDVQQVADQLGQTTTSATDLYINLSDKSGKA 350 Query: 309 WMMEIYDQTHPSITQKDKK 327 + E+ + ++ Q ++ Sbjct: 351 ALREVSETAAKALDQHPQQ 369 >gi|227529280|ref|ZP_03959329.1| site-specific tyrosine recombinase XerS [Lactobacillus vaginalis ATCC 49540] gi|227350811|gb|EEJ41102.1| site-specific tyrosine recombinase XerS [Lactobacillus vaginalis ATCC 49540] Length = 355 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 10/170 (5%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ AI+ L+ G G+R+SEA ++ ++ QS L + KG + VP+ P + I Y Sbjct: 189 RDIAIITLILGTGVRVSEAANVNLADLNLKQSLLDVVRKGGQKDSVPIAPWAVQYIKAYL 248 Query: 215 DL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 ++ + + L L+ G + + ++ +++ G PL T H LRH+ Sbjct: 249 EIRAKRYHALKKDTALFLTLYHG-ETRRMTANAIEKMVKKYSTAFGHPL--TPHKLRHTL 305 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 A+ + + D + LG S T +YT+V+ K + EI + HP Sbjct: 306 ASEMYNVTKDQVLVAQQLGQKGTSATDLYTHVDQKKQRQALDEISE--HP 353 >gi|327404978|ref|YP_004345816.1| integrase family protein [Fluviicola taffensis DSM 16823] gi|327320486|gb|AEA44978.1| integrase family protein [Fluviicola taffensis DSM 16823] Length = 419 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 10/118 (8%) Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 VPLLP + I+E Y + + N LP+ R + Y+++L G+ Sbjct: 298 VPLLP-IPLQIIEKYKNDEYCIKSNKLLPVNSNQR--------YNSYLKELADICGIKKH 348 Query: 260 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 T H RH+FAT + L+NG + ++ S+LGH + TTQ+Y V K D M + D+ Sbjct: 349 LTTHIARHTFATTVTLANGVPIETVSSMLGHKSIRTTQVYAKVVEKKVSDDMKTLRDK 406 >gi|293375666|ref|ZP_06621939.1| phage integrase, N-terminal SAM domain protein [Turicibacter sanguinis PC909] gi|325842952|ref|ZP_08167804.1| phage integrase, N-terminal SAM-like domain protein [Turicibacter sp. HGF1] gi|292645717|gb|EFF63754.1| phage integrase, N-terminal SAM domain protein [Turicibacter sanguinis PC909] gi|325489478|gb|EGC91846.1| phage integrase, N-terminal SAM-like domain protein [Turicibacter sp. HGF1] Length = 326 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 65/302 (21%), Positives = 130/302 (43%), Gaps = 21/302 (6%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L ++ S T SYE R L F E+I ++ I ++ ++ ++ + + Sbjct: 24 LNLKASSSHYTAISYE---RDILDFFQVDYIEQIQLEQIIAVNMFDVEHYLLDLKGKGCA 80 Query: 85 DRSLKRSLSGIKSFLKYL-KKRKITTESNILNMR---NLKKSNSLPRALNEKQALTLVDN 140 ++ R +S + S K+L K + T ++L NLK + P+ N++ D Sbjct: 81 SATINRKVSSLSSLYKWLLKYQDNRTGKSLLYFNPFGNLK--DEKPKVNNKETEFLTQDE 138 Query: 141 V--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDK 196 L+ K ++ RN I+ L LR SE +++ ++I + + + KG+K Sbjct: 139 CQRLISIFDTRKIVELRNKTIIVLALTTALRKSEMINIKLKDITTYGEYDVIHVMRKGNK 198 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-----RGKPLNPGVFQRYIRQLR 251 +V + S+++ I EY + D+ + + LF G + L+P ++ Sbjct: 199 KDMVKIQSSLKRLIEEYIERTNRDMIQDAESYLFIGHSRNKRNNEKLDPSSLNYMLKSTC 258 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK---NGGD 308 + G+ H+ RH+ T ++ G + ++ H ++TT Y + K N GD Sbjct: 259 KKAGIDKHLKVHSTRHTAITLAITGGASIEKVRDFAAHQNIATTNRYVHSIDKLKDNAGD 318 Query: 309 WM 310 ++ Sbjct: 319 YI 320 >gi|158339285|ref|YP_001520462.1| phage integrase [Acaryochloris marina MBIC11017] gi|158309526|gb|ABW31143.1| phage integrase [Acaryochloris marina MBIC11017] Length = 335 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 54/196 (27%), Positives = 90/196 (45%), Gaps = 14/196 (7%) Query: 21 WLQNLEI--ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS-YTEIRAFISK 77 W++ E R +S T ++YE D +QF+ +T++ T R L Y Sbjct: 38 WMRVEEFMRSREISSNTRKAYERDLKQFMD----WTDKGWHEITARDLDRYKNYLKVEPN 93 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 +R Q + ++ R+L+ ++ F K+L R T+ L + LK LP+ ++ + L Sbjct: 94 QRGQLRKNATINRNLAALQGFFKWLTVRDYITKDPTLLLEKLKSDPVLPQEFSQDEVDNL 153 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 + H R+ A+L+L+ GLR SE L + + T+R+ K D + Sbjct: 154 YQAICDRGFHAF-----RDRALLHLI-DHGLRASEIHRLNVGDYDGQRITIRV-AKADSV 206 Query: 198 RIVPLLPSVRKAILEY 213 VPLL RKAI +Y Sbjct: 207 GTVPLLKKARKAIDQY 222 >gi|15595925|ref|NP_249419.1| bacteriophage integrase [Pseudomonas aeruginosa PAO1] gi|9946613|gb|AAG04117.1|AE004508_2 probable bacteriophage integrase [Pseudomonas aeruginosa PAO1] Length = 327 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 26/157 (16%) Query: 152 IDARNSA-----ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 +DAR ++ + + G R EA +LTP+ + + + + K ++R VP+ + Sbjct: 176 LDARTTSPHPKMVARICLATGARWGEAQALTPERLKGN-TVIFANTKSKRVRSVPISEEL 234 Query: 207 RKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + ++ PF L GVF+ + L + LP +H L Sbjct: 235 GADLRRHWQTHGPFTNCL-----------------GVFRLVL--LSTSIKLPKGQASHVL 275 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 RH+FA+H + NGG + ++Q ILGH LS T Y +++ Sbjct: 276 RHTFASHFIMNGGHIVTLQHILGHASLSMTMRYAHLS 312 >gi|184155346|ref|YP_001843686.1| integrase [Lactobacillus fermentum IFO 3956] gi|183226690|dbj|BAG27206.1| integrase [Lactobacillus fermentum IFO 3956] Length = 292 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 66/281 (23%), Positives = 121/281 (43%), Gaps = 19/281 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q WL ++G +KLT+ SY D R +L T +T +Q+ + ++ Sbjct: 16 QEWL----TKKGGAKLTIASYLTDLRDTAAYL---TSRGVT--NWQQVDRATLTVYLQSL 66 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + +++R +S ++ F YL+ + ++ + P L ++A L Sbjct: 67 NDKGRRTTTIQRRISSLRRFYVYLQVTGQVNHDPVALLKAKQTPRLAPVGLTPQEADLLP 126 Query: 139 DNVLLHTSHETKWID-ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 D+V K + RN A++ LL G R +E L + +D + + G+ + Sbjct: 127 DHV------PGKGVARERNRALVALLVATGARANELRDLQTGD-LDLELGVVYLGQSSR- 178 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 R+VPL + L Y D + + +F RG+PL+ + + + Sbjct: 179 RLVPLNEQA-QTYLTTYLTARADQSATDEGYVFLNNRGQPLSRQSIWEIVNATGQRANIE 237 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + T +R FA LL++G DL +Q ++GH + TTQ+Y Sbjct: 238 GAVTPQRVRDGFAYRLLAHGADLSLVQQLMGHQSILTTQVY 278 >gi|170769298|ref|ZP_02903751.1| integrase [Escherichia albertii TW07627] gi|300901680|ref|ZP_07119738.1| site-specific recombinase, phage integrase family [Escherichia coli MS 198-1] gi|170121950|gb|EDS90881.1| integrase [Escherichia albertii TW07627] gi|300354904|gb|EFJ70774.1| site-specific recombinase, phage integrase family [Escherichia coli MS 198-1] Length = 330 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 67/149 (44%), Gaps = 24/149 (16%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212 DAR AIL L G R SEA L ++I+ ++ T K K R VP+ SV Sbjct: 180 DARRVAILCL--STGARWSEASELRGEHIVGNRVTF-FNTKNGKSRSVPVADSV------ 230 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-GLPLSTTAHTLRHSFAT 271 +PL + R L + ++ L+ LP H +RH+FAT Sbjct: 231 --------------VPLIKTRRTGLLYQVDYLKFREILQEVKPDLPKGQATHVMRHTFAT 276 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 H + NGG++ ++Q ILGH + T Y + Sbjct: 277 HFMMNGGNIVTLQRILGHATIQQTMTYAH 305 >gi|17233219|ref|NP_490309.1| integrase/recombinase [Nostoc sp. PCC 7120] gi|17135741|dbj|BAB78287.1| integrase/recombinase [Nostoc sp. PCC 7120] Length = 319 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 51/196 (26%), Positives = 91/196 (46%), Gaps = 25/196 (12%) Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173 +++++++ + LP L + + +T LL + I R++A++ +L CGLR SEA Sbjct: 115 IDLKSVRGDSGLPGRLIKPEEIT----SLLRNCLQDNVIGIRDAALIGILSSCGLRRSEA 170 Query: 174 LSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYD---------LCPFDLNL 223 ++L + + + L + QGKG K R V L P V + ++ +CP Sbjct: 171 VALEMNDFNREDNLLTVRQGKGGKSRRVYLPPGVVGILNDWLKIRGKSSGALICPVKRGG 230 Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRS 282 +I + + L ++ G+ P S H R +F T LL +G D+ + Sbjct: 231 HIHI--------QHLTDQAVMAICQKRADSTGIKPFS--PHDFRRTFVTRLLESGIDVLT 280 Query: 283 IQSILGHFRLSTTQIY 298 + + GH L+TTQ Y Sbjct: 281 VSQLAGHVNLATTQKY 296 >gi|238023303|ref|YP_002907536.1| Phage integrase family protein [Burkholderia glumae BGR1] gi|238023496|ref|YP_002907729.1| Phage integrase family protein [Burkholderia glumae BGR1] gi|238025678|ref|YP_002909910.1| Phage integrase family protein8 [Burkholderia glumae BGR1] gi|237880343|gb|ACR32674.1| Phage integrase family protein8 [Burkholderia glumae BGR1] gi|237880356|gb|ACR32686.1| Phage integrase family protein [Burkholderia glumae BGR1] gi|237880549|gb|ACR32878.1| Phage integrase family protein [Burkholderia glumae BGR1] Length = 611 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 59/203 (29%), Positives = 81/203 (39%), Gaps = 56/203 (27%) Query: 153 DARNSAILYLLYG-CGLRISEALSLTPQNIM-----DDQST---LRIQGKGDKIRIVPLL 203 D R + L LL G GLRI EA+++ + DD LR+ GKG K RIVPL Sbjct: 395 DWRVARALVLLMGDAGLRIEEAVTVERGGLQWWPAEDDTPATWMLRLIGKGSKERIVPLT 454 Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL------------------------- 238 +A+ E++ D L++ P G PL Sbjct: 455 EDTVQALREHWQ----DRGLDLDAP-GAAADGVPLVAPTVVPPTPASREKFGVTETGEVT 509 Query: 239 -----NPGVFQRYI-RQLRRYLG-LP----------LSTTAHTLRHSFATHLLSNGGDLR 281 P +R + R LRR L LP +T+ H RH+F T + G + Sbjct: 510 RVAGYTPRAARRVVTRALRRLLEQLPDWEESARRQLAATSPHAFRHTFGTQSAAAGMAIE 569 Query: 282 SIQSILGHFRLSTTQIYTNVNSK 304 +Q +LGH L TT IY N + Sbjct: 570 VLQQVLGHGSLQTTTIYVNAEQQ 592 >gi|28373036|ref|NP_783718.1| Orf81 [Yersinia enterocolitica] gi|32470332|ref|NP_863561.1| hypothetical protein pYVe8081_p56 [Yersinia enterocolitica] gi|122815850|ref|YP_001004116.1| putative resolvase/recombinase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|14579390|gb|AAK69267.1|AF336309_62 unknown [Yersinia enterocolitica] gi|23630608|gb|AAN37564.1| Orf81 [Yersinia enterocolitica] gi|121663724|emb|CAL10093.1| putative resolvase/recombinase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|310923273|emb|CBW54739.1| p64 in pYVa127/90, site-specific recombinase homologous to XerD/IntI [Yersinia enterocolitica (type O:8)] Length = 244 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 95/233 (40%), Gaps = 37/233 (15%) Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150 S S I + Y K + L LK SLPR L + L+D + Sbjct: 13 SRSAITPYFNYEK-------AVALRRMALKAGASLPRYLLAPEITVLLDYL--------- 56 Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-------TLRIQGKGDK------- 196 D R + L+ G RI+E L LTP + D + TL+ + +G Sbjct: 57 -PDLRQRLLFDTLWNTGARINECLVLTPGDFELDGAGPFVTLKTLKQRHRGPGRPENGEA 115 Query: 197 -IRIVPLL-PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 RIVPL P+ + + EY + + + PL+ + R R + Sbjct: 116 LKRIVPLSDPAYVRRLQEYAA----TMKITRRKPLWPMKSDDTARNWLKAAVQRAERDGV 171 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 + T HT RHSFA HLL NG + +Q+ +GH +T+IYT + + + G Sbjct: 172 TFTIPITPHTFRHSFAMHLLQNGLPFKVLQAYMGHQDTKSTEIYTRIFALDVG 224 >gi|56475688|ref|YP_157277.1| phage-related integrase [Aromatoleum aromaticum EbN1] gi|56311731|emb|CAI06376.1| phage-related integrase [Aromatoleum aromaticum EbN1] Length = 417 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 71/304 (23%), Positives = 133/304 (43%), Gaps = 20/304 (6%) Query: 7 PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66 P + + + +E + + ++++ RGL+ T S R+ L+ + E++I + +R Sbjct: 114 PTMRTTPVDEELRRYDEHMDHIRGLAPKTRSSALRIVRRLLV--TRFGEDEIDVAAVRP- 170 Query: 67 SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNS 124 +R F +++ + ++ ++ + +Y I ++ + S Sbjct: 171 --DHVRRFFAQQAKLYSKPANAGTVVAALRGYFRYRASLGDAVHGLIGAVSYPANWQLAS 228 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 LP+ L ++ LV + L + R AI+ GLR E L+ +I Sbjct: 229 LPKTLTTEEVEQLVGS-LGQAGRSLR----RADAIVRCALDLGLRSGEVARLSLDDIDWR 283 Query: 185 QSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGI--RGKPLNP 240 T+ ++ KG ++PL + AI Y P N I R + R +P P Sbjct: 284 AGTITVRHTKGRHDDVLPLPVTTGAAIAAYLKHERPKTHNRAI---FVRHVAPRDQPAGP 340 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + ++ IRQ + GLP T +H LRH+ A LL+ G L+ + +L H L+TT IY Sbjct: 341 DLVRKTIRQAFKRAGLPY-TRSHLLRHTMANRLLAGGASLKEVADVLRHRSLNTTLIYAK 399 Query: 301 VNSK 304 ++S+ Sbjct: 400 LDSR 403 >gi|49087894|gb|AAT51509.1| PA0728 [synthetic construct] Length = 328 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 26/157 (16%) Query: 152 IDARNSA-----ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 +DAR ++ + + G R EA +LTP+ + + + + K ++R VP+ + Sbjct: 176 LDARTTSPHPKMVARICLATGARWGEAQALTPERLKGN-TVIFANTKSKRVRSVPISEEL 234 Query: 207 RKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + ++ PF L GVF+ + L + LP +H L Sbjct: 235 GADLRRHWQTHGPFTNCL-----------------GVFRLVL--LSTSIKLPKGQASHVL 275 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 RH+FA+H + NGG + ++Q ILGH LS T Y +++ Sbjct: 276 RHTFASHFIMNGGHIVTLQHILGHASLSMTMRYAHLS 312 >gi|288801474|ref|ZP_06406926.1| integrase [Prevotella sp. oral taxon 299 str. F0039] gi|288331555|gb|EFC70041.1| integrase [Prevotella sp. oral taxon 299 str. F0039] Length = 397 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 75/156 (48%), Gaps = 18/156 (11%) Query: 162 LLYGC--GLRISEALSLTPQNI--MD-DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 L+ C GL + +LT NI MD Q + + K D + + LL + K I+E Y Sbjct: 224 FLFSCFTGLAYVDVANLTADNIITMDGKQWIVTARKKTDTLSHILLL-DIPKMIIEKYAG 282 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 C + L +P+ R Y++++ G+ + T H RH+FAT +L+ Sbjct: 283 CAKNGRL---IPILSNQR--------MNSYLKEIADVCGINKNLTFHMARHTFATMMLTK 331 Query: 277 GGDLRSIQSILGHFRLSTTQIYTNV-NSKNGGDWMM 311 G + S+ +LGH ++TTQ+Y + N K D +M Sbjct: 332 GVPVESVSKMLGHSSITTTQLYARITNKKIENDMLM 367 >gi|91209996|ref|YP_539982.1| putative phage integrase [Escherichia coli UTI89] gi|91071570|gb|ABE06451.1| putative phage integrase [Escherichia coli UTI89] gi|332342335|gb|AEE55669.1| phage integrase [Escherichia coli UMNK88] Length = 330 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 67/149 (44%), Gaps = 24/149 (16%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212 DAR AIL L G R SEA L ++I+ ++ T K K R VP+ SV Sbjct: 180 DARRVAILCL--STGARWSEASELRGEHIVGNRVTF-FNTKNGKSRSVPVADSV------ 230 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-GLPLSTTAHTLRHSFAT 271 +PL + R L + ++ L+ LP H +RH+FAT Sbjct: 231 --------------VPLIKTRRTGLLYQVDYLKFREILQEVKPDLPKGQATHVMRHTFAT 276 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 H + NGG++ ++Q ILGH + T Y + Sbjct: 277 HFMMNGGNIVTLQRILGHATIQQTMTYAH 305 >gi|228949488|ref|ZP_04111742.1| Integrase-recombinase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810211|gb|EEM56578.1| Integrase-recombinase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 390 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 66/153 (43%), Gaps = 10/153 (6%) Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 N I+ L G RI E + +++ D + L+++GKGDK R + + + + I E Sbjct: 218 NYTIILALASTGARIQELCTARVKDLHYDGKYWLKVRGKGDKFRELFVSEHLYQCICEVR 277 Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266 F L + PLF RG N + + + L TAHT R Sbjct: 278 RRRGFQTVLEKGDESPLFINQRGSAYNSKTLSNQVTDMIKKTNLEFLQYRENPVTAHTFR 337 Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298 H+FA + G DL + LGH + TT+IY Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370 >gi|222080175|ref|YP_002540038.1| integrase/recombinase [Agrobacterium vitis S4] gi|221738820|gb|ACM39599.1| integrase/recombinase [Agrobacterium vitis S4] Length = 408 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 75/297 (25%), Positives = 126/297 (42%), Gaps = 34/297 (11%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 L+ E W + +RGL++ TL +Y F+ L T IRA Sbjct: 121 LVAEFAAWARE---QRGLAETTLATYLGTITPFIDTLG---------DTPAIYDAATIRA 168 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNE 131 ++ +R + + +K GI++FL++L M N+ + S+PR L + Sbjct: 169 YMIER-AKAVSVARMKGISVGIRAFLRFLIATGRCRPGLDHAMPNVAGWRLASIPRFLPD 227 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 + ++ + E + R+ AI+ LL GLR SE L +I Q ++R+ Sbjct: 228 AD----IARIIGACNGERR---LRDRAIILLLVRLGLRASEVARLGFGDIDWRQGSIRLF 280 Query: 192 GKGDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 GKG + ++PL + A+L Y + L L + PL +P++ + Sbjct: 281 GKGRREELLPLTQEIGDALLAYIERGRPALAVPSLFITEYAPL------RPIDRITVKCL 334 Query: 247 I-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + R L+R AH LRHS AT +L +G L + ++L H T Y V+ Sbjct: 335 VKRALKRGGVESHYKGAHILRHSAATAMLRHGVSLAHVGTVLRHRSPEMTAHYAKVD 391 >gi|326791264|ref|YP_004309085.1| integrase family protein [Clostridium lentocellum DSM 5427] gi|326542028|gb|ADZ83887.1| integrase family protein [Clostridium lentocellum DSM 5427] Length = 314 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 76/307 (24%), Positives = 142/307 (46%), Gaps = 36/307 (11%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 K Q ++ +LE E+ LS T+++Y D QF +T++K + L++ + + + Sbjct: 5 KAIQYFISSLEAEQ-LSSHTIKAYLQDLNQF----KNWTQKK----EVDDLNFEDFQDYF 55 Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE---SNILNMRNLKKSNSLPRALNEK 132 + K+ S+KR + F K+ ++K+ TE I +R+ K N +P+ + + Sbjct: 56 IE--ISKLKMTSIKRKRVVMHRFFKFCYRKKLCTEKLHEYIDPIRS--KKNVVPKEVLSR 111 Query: 133 QALTLVDNVLLHTSHETK------------WIDARNSAILYLLYGCGLRISEALSLTPQN 180 + ++L+ + L + K + RN ++ +L G R E ++L Q+ Sbjct: 112 EEISLIFDFLKKEEKQYKLKVNNTYYDYLYYCSLRNQLLISILLYTGCRAHEVVALKKQD 171 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP--- 237 I Q+T+ + KG K VP+ ++KA L+ Y+ L+L +Q L P Sbjct: 172 INLLQNTITLFTKGGKYNQVPIHDELKKA-LDNYNESISTLSLGLQNLLQESHYLFPSKT 230 Query: 238 -LNPGVFQRYIRQLRRYLGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 N + R + L + L AH RH+FA++ ++ D+ +I S++ H S Sbjct: 231 DSNNYMPTRTLHDLMKKLSAATGRHIHAHLFRHTFASYCIAANMDISTISSLISHSNPSI 290 Query: 295 T-QIYTN 300 T IYT+ Sbjct: 291 TLSIYTH 297 >gi|325297661|ref|YP_004257578.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324317214|gb|ADY35105.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 432 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 15/142 (10%) Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR---IVPLLPSVRKAILEYYDLCPFDLN 222 CGLRIS+ L +++ D+ R+ K + +PL K + E D P DL Sbjct: 289 CGLRISDVKRLQWKDVFIDKGQYRLAVSMKKTKEPIYLPLSSEALKWMPERGDKTPDDLV 348 Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282 + LP G +N R ++ + G+ + HT RH+FAT +L+ G DL + Sbjct: 349 FD--LP-----SGNEIN-----RLLKPWAKAAGINKRFSFHTSRHTFATMMLTLGADLYT 396 Query: 283 IQSILGHFRLSTTQIYTNVNSK 304 +LGH + TQ+Y + +K Sbjct: 397 TSKLLGHADVKMTQVYAKIINK 418 >gi|269977407|ref|ZP_06184379.1| tyrosine recombinase XerC [Mobiluncus mulieris 28-1] gi|269934323|gb|EEZ90885.1| tyrosine recombinase XerC [Mobiluncus mulieris 28-1] Length = 225 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 54/218 (24%), Positives = 89/218 (40%), Gaps = 29/218 (13%) Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150 + S + F + + + +K+ PR ++E +D Sbjct: 23 AFSSFRQFFAWAYRTGRLETDPAAGLPAIKRFVPPPRPISELDFEAALDQA--------- 73 Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSVRK 208 D R IL L GLR SE + ++I D +L + GKG K R+VP+ S+ Sbjct: 74 --DERTRLILLLAGKMGLRRSEICLVHARDIQQDLLGYSLVVHGKGGKTRVVPIPDSL-- 129 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKP--LNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 + P I +F + + L G + +++ LP H LR Sbjct: 130 -------VFPLRRAGEIGGWVFPSLTAREGHLTSGTVAKLAKRV-----LPTGVCLHQLR 177 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 H FAT + DLR++Q +LGH ++STTQ Y ++ + Sbjct: 178 HRFATIVYLRTKDLRAVQMLLGHDKVSTTQRYVAMDDQ 215 >gi|255692292|ref|ZP_05415967.1| putative integrase/recombinase y4rA [Bacteroides finegoldii DSM 17565] gi|260622025|gb|EEX44896.1| putative integrase/recombinase y4rA [Bacteroides finegoldii DSM 17565] Length = 413 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 78/311 (25%), Positives = 133/311 (42%), Gaps = 26/311 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L LE E+ LS T+ YE FL L+ +I+ + ++ FIS + Sbjct: 116 YLHLLE-EQRLSPKTIDGYEHVFSYFLRHLSLRNVSRIS-----DIGEDDVLTFISSSQN 169 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTES--NILNMRNLKKSNSLPRALNEKQALTLV 138 K +R L+ +++F +YL ++K+ ++ ++ LP ++ L + Sbjct: 170 SK------QRVLATMRAFCRYLYEQKLINKNIDYVIGRNRYIVKEKLPSTYTCEEVLQIE 223 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGDKI 197 +V +++ + R+ A+L L GLR S+ L N+ D++ +R IQ K + Sbjct: 224 SSV-----NQSTPVGKRDYAMLLLATRLGLRSSDIAGLQFSNLDWDRNIIRLIQYKTKRE 278 Query: 198 RIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL---RRY 253 +PLL V +AI+ Y P + I L P+N V +R++ R Sbjct: 279 IELPLLKDVGEAIINYVKYGRPSSSSKQIFLSSLAPY--NPVNGAVVSLSVRKIICHSRI 336 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 H +RH+ A+ LL NG L I LGH TT Y ++ ++E+ Sbjct: 337 DTRDRKKGPHAMRHTLASQLLRNGISLPVISETLGHKTTQTTMGYLRIDIDGLMKCVLEV 396 Query: 314 YDQTHPSITQK 324 D TQK Sbjct: 397 PDVPSDFYTQK 407 >gi|295090449|emb|CBK76556.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum K10] Length = 413 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 50/214 (23%), Positives = 100/214 (46%), Gaps = 45/214 (21%) Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 E+ L V N H K+ D +Y+L+ GLRISE + LT +N+ + S + + Sbjct: 197 ERDFLEFVKN----DKHFCKYYDG-----IYILFKTGLRISEFVGLTKKNLDFENSRIIV 247 Query: 191 QGKGDKIR----------------IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI- 233 + + R +VP+ P V++A + + N ++ P+ G Sbjct: 248 DHQLQRTRDMKYIIEDTKTESGERMVPMTPEVKEA---FQRILANRKNPKVE-PMVDGYS 303 Query: 234 -------RGKPLNPGVFQRYIRQLR-RY-----LGLPLSTTAHTLRHSFATHLLSNGGDL 280 G+P+ +++Y + +R +Y + +P T H RH+F +++ +G + Sbjct: 304 GFLFLDKNGRPMVALHWEKYFQHIREKYNKIYRVQMP-KVTPHVCRHTFCSNMAKSGMNP 362 Query: 281 RSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313 +++Q I+GH +S T +YT++N + + M ++ Sbjct: 363 KTLQYIMGHSDISVTLNVYTHLNYDDAEEEMQKV 396 >gi|126667022|ref|ZP_01737997.1| putative integrase [Marinobacter sp. ELB17] gi|126628428|gb|EAZ99050.1| putative integrase [Marinobacter sp. ELB17] Length = 286 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 63/254 (24%), Positives = 108/254 (42%), Gaps = 26/254 (10%) Query: 63 IRQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121 + + T + AF+ + I R+ L+ I+SF +++ + + I ++ Sbjct: 10 LEDIDATLVSAFLEDLEVNRSISARTRNLRLTAIRSFFRFVSYEEPAHSAQI------QR 63 Query: 122 SNSLPRALNEKQALTLVD----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 ++P +++ + + LL ++ WI R+ +L L GLR+SE L Sbjct: 64 VLAVPDKRQDRRIVHFLARPEIEALLAAPDQSTWIGRRDHTLLLLAVQTGLRLSELTGLD 123 Query: 178 PQN-IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 + ++ + + GKG K R PL +V +AI E P + LF +G+ Sbjct: 124 RASVVLGSDAHVHCLGKGRKERCTPLTRTVSRAIQEGLKE-PARCDSKA---LFSTRQGR 179 Query: 237 PLNPGVFQ----RYIRQLRRYLGLPL----STTAHTLRHSFATHLLSNGGDLRSIQSILG 288 L+ Q +Y R++ P T H LRHS A LL G D I LG Sbjct: 180 RLSADAVQYLVAKYADITRQH--CPSLKQKRITPHVLRHSAAMELLQAGVDCSVIALWLG 237 Query: 289 HFRLSTTQIYTNVN 302 H + TTQ+Y + + Sbjct: 238 HESVETTQVYLHAH 251 >gi|170076521|ref|YP_001733160.1| integrase/recombinase [Synechococcus sp. PCC 7002] gi|170079512|ref|YP_001736147.1| integrase/recombinase [Synechococcus sp. PCC 7002] gi|169887181|gb|ACB00892.1| integrase/recombinase [Synechococcus sp. PCC 7002] gi|169887383|gb|ACB01091.1| integrase/recombinase [Synechococcus sp. PCC 7002] Length = 289 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 17/158 (10%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211 RN I+ LY G+R+SE +++ + + D+ L++ GKGDK+R + ++P+ L Sbjct: 136 RNELIIKTLYLLGVRVSELINIRWDDFIQTDDNGLKLKVMGKGDKVRFI-VVPTGLWDEL 194 Query: 212 EYYDLCPFDLNLNIQLPLF---RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 E N +F +G G L+ R ++ +G+ +S H LRHS Sbjct: 195 EALR--------NDSAYVFSSRKGNNGSKLSRIQVYRVVKANGDRVGVQVS--PHFLRHS 244 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 ATH L NG DL + LGH ++ T Y + + +G Sbjct: 245 HATHSLKNGCDLHLLSESLGHGNIAITSRYLHASGDDG 282 >gi|170684056|ref|YP_001744555.1| type 1 fimbriae regulatory protein [Escherichia coli SMS-3-5] gi|218700830|ref|YP_002408459.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli IAI39] gi|170521774|gb|ACB19952.1| type 1 fimbriae regulatory protein, FimB family [Escherichia coli SMS-3-5] gi|218370816|emb|CAR18629.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli IAI39] Length = 209 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 73/174 (41%), Gaps = 21/174 (12%) Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT------------PQNIMDDQSTLR 189 LL S K +R+ ++ L Y GLR+SE LSL Q I + ST+ Sbjct: 14 LLLQSVRQKSCSSRDVCMILLAYFHGLRVSELLSLQLSDLELTTEKIYIQRIKNGFSTVH 73 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 K + I I L +++++ P+ LF GKPL+ F + Sbjct: 74 PLQKEEVIAITNWLNERNSLNVKHFNDNPW---------LFVSRTGKPLSRQRFYNIVSA 124 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + GL + H LRH+ L NG D R IQ LGH + T IYT NS Sbjct: 125 AGKNAGLNIKVHPHMLRHACGYSLADNGVDTRLIQDYLGHRNIRHTVIYTASNS 178 >gi|293418008|ref|ZP_06660630.1| hypothetical protein ECDG_02928 [Escherichia coli B185] gi|291430726|gb|EFF03724.1| hypothetical protein ECDG_02928 [Escherichia coli B185] Length = 334 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 24/159 (15%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212 D R A+L L G R SEA L + I+ ++ T ++ K + R VP+ + A+ Sbjct: 181 DQRRVALLCLCTGA--RWSEASRLHGEQIVHNRITF-LETKNGRKRTVPVSQEICDAVKT 237 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-GLPLSTTAHTLRHSFAT 271 FD+ ++ + R L++ LP AH LRH+FA+ Sbjct: 238 KETGRLFDVK--------------------YREFCRALKKIKPDLPRGQAAHVLRHTFAS 277 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 H + NGG++ ++Q ILGH + T Y + D M Sbjct: 278 HFVMNGGNILALQKILGHATIQQTMAYAHFAPDYLADAM 316 >gi|56476508|ref|YP_158097.1| phage-related integrase [Aromatoleum aromaticum EbN1] gi|56312551|emb|CAI07196.1| phage-related integrase [Aromatoleum aromaticum EbN1] Length = 347 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 73/175 (41%), Gaps = 21/175 (12%) Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIR 198 +L + W R+ + LLY G R+SE + + ++ + S++R+QGKG K R Sbjct: 148 QAVLAAPDTSTWCGRRDRVMFALLYNTGARVSEMIGIRVADVTLGATSSVRLQGKGRKQR 207 Query: 199 IVPLLPSVRKAI---LEYYDLCPFDLNLNIQLPLFRGIRGKPLN-PGVFQR-------YI 247 VPL I L+Y DL PL G+ + V +R Sbjct: 208 TVPLWKETAAEIRHWLKYADL-------RTDQPLVPNRSGRAMTRTNVAERLALAITAAT 260 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 Q R G +S H+ RH+ A HLL G D+ I LGH TT Y + Sbjct: 261 TQCPRLAGRRISP--HSWRHTTAMHLLQAGVDITVIALWLGHESPVTTHGYVEAD 313 >gi|295397961|ref|ZP_06808017.1| possible integrase [Aerococcus viridans ATCC 11563] gi|294973719|gb|EFG49490.1| possible integrase [Aerococcus viridans ATCC 11563] Length = 356 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 110/237 (46%), Gaps = 35/237 (14%) Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-------RALNEKQALTL 137 DR++K + + F K+L++ + NI+ N N++P AL+ + L Sbjct: 94 DRTIKSYRNMLNQFFKWLERENLY--ENIVARAN----NNIPVPHGHAKDALDIEDVEKL 147 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-----STLRIQG 192 +D L ++ +T I RN A++ L GLR + L+ N D Q + + +QG Sbjct: 148 LD--YLKSTTDT-LIGKRNYALILLAVTTGLR---TIELSRANFEDVQRRGLNTVIYVQG 201 Query: 193 KG--DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ---LPLF--RGIRGKP--LNPGVF 243 KG +K V ++P K ++ Y D + I PLF G R K ++ Sbjct: 202 KGRREKDEFV-IIPRKTKEVVRDYTRFREDQGIMINTDLAPLFASHGNRNKSGRMSARSI 260 Query: 244 QRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 R I +G+ S T H+LRH+ AT L NGG+LR Q +L H + TT+IY Sbjct: 261 SRVIANAYEAVGIHSSKITPHSLRHTAATLSLINGGNLRETQKLLRHSSVRTTEIYA 317 >gi|223369810|gb|ACM88774.1| integrase [uncultured bacterium] Length = 161 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 24/41 (58%), Positives = 30/41 (73%) Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 HT RHSFATHLL G D+R++Q +LGH + TTQIYT+ Sbjct: 121 VACHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTH 161 >gi|312913689|dbj|BAJ37663.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] Length = 336 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 58/250 (23%), Positives = 104/250 (41%), Gaps = 36/250 (14%) Query: 56 EKITIQTIRQLSYTEIRAFISKRRTQKIGDR----SLKRSLSGIKSFLKYL-KKRKITTE 110 EKI + Y R F+ K R ++ D ++ R + S + L + E Sbjct: 93 EKINREMGEPRVYELTRNFLMKYRASRLHDGVSAGTVNRDFCTMSSMFRLLIDMEEFHHE 152 Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170 + +R L+ N+ L+E++ + ++L+ + + + ++ L G R Sbjct: 153 NPFHKVRKLRLENTEMSFLSEEE----IRDLLMALTGDDR-------RVVVLCLNTGARW 201 Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230 EA +L ++++ ++ T ++ K R VP+ + IL FD N + Sbjct: 202 GEASNLKAEHVISNRVTF-VKTKTGPARTVPISQEIADYILTRKSGKLFDTNYERVRDVL 260 Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290 R + KP LP H LRH+FATH + NGG++ ++Q ILGH Sbjct: 261 RKV--KP-----------------DLPRGQALHVLRHTFATHFMINGGNIITLQRILGHT 301 Query: 291 RLSTTQIYTN 300 + T Y + Sbjct: 302 TIEQTMTYAH 311 >gi|25011273|ref|NP_735668.1| hypothetical protein gbs1224 [Streptococcus agalactiae NEM316] gi|76799532|ref|ZP_00781664.1| integrase [Streptococcus agalactiae 18RS21] gi|23095697|emb|CAD46883.1| Unknown [Streptococcus agalactiae NEM316] gi|76585116|gb|EAO61742.1| integrase [Streptococcus agalactiae 18RS21] Length = 358 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 34/166 (20%) Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ------STLRIQG--KG-- 194 TS+E K+ ++ +YL+ GLR SEA+ LT +I D+ T ++ G KG Sbjct: 180 TSNEVKY---KSHFCIYLIATTGLRFSEAMGLTWSDIDRDELLLHVNKTYKVFGSDKGFQ 236 Query: 195 -----DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 IR VP+ + K + +Y L + +F GI +N + Sbjct: 237 PTKNKHSIRYVPINNTTIKLLDQY------RLLFKTETRIFEGISNTAVN--------KT 282 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 L++ +G + H+LRH++ +HL+S G DL +I I+GH L+ T Sbjct: 283 LKKLVGRNIHI--HSLRHTYVSHLISEGIDLFAISKIVGHKDLNIT 326 >gi|197250677|ref|YP_002147601.1| integrase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205360077|ref|ZP_02834436.2| integrase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|197214380|gb|ACH51777.1| integrase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205341129|gb|EDZ27893.1| integrase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 336 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 58/250 (23%), Positives = 104/250 (41%), Gaps = 36/250 (14%) Query: 56 EKITIQTIRQLSYTEIRAFISKRRTQKIGDR----SLKRSLSGIKSFLKYL-KKRKITTE 110 EKI + Y R F+ K R ++ D ++ R + S + L + E Sbjct: 93 EKINREMGEPRVYELTRNFLMKYRASRLHDGVSAGTVNRDFCTMSSMFRLLIDMEEFHHE 152 Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170 + +R L+ N+ L+E++ + ++L+ + + + ++ L G R Sbjct: 153 NPFHKVRKLRLENTEMSFLSEEE----IRDLLMALTGDDR-------RVVVLCLNTGARW 201 Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230 EA +L ++++ ++ T ++ K R VP+ + IL FD N + Sbjct: 202 GEASNLKAEHVISNRVTF-VKTKTGPARTVPISQEIADYILTRKSGKLFDTNYERVRDVL 260 Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290 R + KP LP H LRH+FATH + NGG++ ++Q ILGH Sbjct: 261 RKV--KP-----------------DLPRGQALHVLRHTFATHFMINGGNIITLQRILGHT 301 Query: 291 RLSTTQIYTN 300 + T Y + Sbjct: 302 TIEQTMTYAH 311 >gi|315644272|ref|ZP_07897442.1| integrase family protein [Paenibacillus vortex V453] gi|315280647|gb|EFU43936.1| integrase family protein [Paenibacillus vortex V453] Length = 303 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 7/167 (4%) Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 L+ ++ ++ R+ ++ G+R SEAL+L P + +RI K R+ Sbjct: 126 LIRVPDQSTFVGMRDYTLIIFTLDTGIRPSEALALQPNDFNLISGWVRIPDGAAKTRVSR 185 Query: 202 LL---PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 L P A+ D+ P + ++P+F G LN + + + + +G+ + Sbjct: 186 TLNISPVTVDALKRLIDMRP--RSWANKVPVFSTETGNVLNRHTWGDRLERHSKQVGVHI 243 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 T + LRH+FA L NG S+Q LGH +S T+ Y + ++ Sbjct: 244 --TPYALRHAFALEFLRNGASAFSLQKTLGHVDISMTKRYVALADED 288 >gi|238916936|ref|YP_002930453.1| integrase/recombinase XerC [Eubacterium eligens ATCC 27750] gi|238872296|gb|ACR72006.1| integrase/recombinase XerC [Eubacterium eligens ATCC 27750] Length = 354 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 54/225 (24%), Positives = 100/225 (44%), Gaps = 17/225 (7%) Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV-- 141 + + KR L ++ F +Y + +I + + + + K + + +DNV Sbjct: 112 SESAAKRKLCALRRFYEYYCRYEIISLNPTIKVDMPKIHEKAIIRMEPNEVAEFLDNVES 171 Query: 142 ---LLHT---SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L T SHE + R+ A+L L+ G G+R+SE + L ++ D +R+ KG Sbjct: 172 GNKLTKTQLQSHEK--LKTRDLALLTLMLGTGIRVSECVGLDINDVDFDNDRIRVIRKGG 229 Query: 196 KIRIVPLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 V VR+A+L Y + L P + + N LF + K L + +++ Sbjct: 230 SESFVYFGDEVREALLNYLEERKNLTPDEGHEN---ALFISAKKKRLCVRSVELLVKKYA 286 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + + T H LR ++ T+L D+ + +LGH ++TT+ Sbjct: 287 QTVTTVKHITPHKLRSTYGTNLYQESQDIYLVADVLGHKDVNTTR 331 >gi|228918167|ref|ZP_04081671.1| Integrase-recombinase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841447|gb|EEM86586.1| Integrase-recombinase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 390 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 66/153 (43%), Gaps = 10/153 (6%) Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 N I+ L G RI E + +++ D + L+++GKGDK R + + + + I E Sbjct: 218 NYTIILALASTGARIQELCTARVKDLHYDGKYWLKVRGKGDKFRELFVSEHLYQCICEVR 277 Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266 F L + PLF RG N + + + L TAHT R Sbjct: 278 RRRGFQTVLEKGDESPLFINQRGSAYNSKTLSNQVTDMIKKTNLEFLQYRENPVTAHTFR 337 Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298 H+FA + G DL + LGH + TT+IY Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370 >gi|223369796|gb|ACM88767.1| integrase [uncultured bacterium] Length = 163 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/42 (59%), Positives = 31/42 (73%) Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T HT RHSFATHLL D+R++Q +LGH + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAERDIRTVQELLGHTDVKTTQIYTHV 162 >gi|138895711|ref|YP_001126164.1| putative integrase/recombinase XerD [Geobacillus thermodenitrificans NG80-2] gi|134267224|gb|ABO67419.1| Putative integrase/recombinase XerD [Geobacillus thermodenitrificans NG80-2] Length = 304 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 67/291 (23%), Positives = 131/291 (45%), Gaps = 35/291 (12%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87 E+G S T+ SY D F L + +T IR+ I+ ++ + + + Sbjct: 11 EKGASPNTIISYTNDLNIFFNDLHIRPSDYVTSADIRKW----IQQMLNPIEGKPLAIST 66 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV---LLH 144 + R L+ ++SF + + ++ + ++++LK ++ + ++ + L + LLH Sbjct: 67 INRRLNSLRSFYAWAVEHHKIEQNPMKDIQDLKSADE-----DYEKIMWLTEEEFEDLLH 121 Query: 145 TSHE----TKWIDA-----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 + ++ +D R+ A++YLL GLR+ E +L ++ + +RI GKG Sbjct: 122 RMRKKPVRSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEMKRIRIVGKGM 181 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL------NPGVFQRYIRQ 249 K+R VP + ++ A LE D F + + P + P +P R I++ Sbjct: 182 KVRTVP-ISNILLAELE--DWLEFRAEMAKKKP---HVAASPYVFYSQRSPKFSVRGIQR 235 Query: 250 LRRYLGLP-LSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRLSTTQIY 298 + LP T H RH+F +L + D+ ++ + GH ++TT Y Sbjct: 236 MIESYSLPNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRY 286 >gi|255527483|ref|ZP_05394353.1| integrase family protein [Clostridium carboxidivorans P7] gi|296187567|ref|ZP_06855962.1| phage integrase [Clostridium carboxidivorans P7] gi|308390327|ref|YP_003933780.1| phage integrase family protein [Clostridium carboxidivorans P7] gi|255508826|gb|EET85196.1| integrase family protein [Clostridium carboxidivorans P7] gi|296048089|gb|EFG87528.1| phage integrase [Clostridium carboxidivorans P7] gi|308066834|gb|ADO12138.1| phage integrase family protein [Clostridium carboxidivorans P7] Length = 278 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 72/301 (23%), Positives = 133/301 (44%), Gaps = 50/301 (16%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDT-RQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 +L E + +L ++ G +K T++SY F F + E+ + + L Y + Sbjct: 1 MLDEFEKYL----LQEGKAKNTIKSYMLHVGNYFKWFRDSFGEDPLKLYRQNVLEY---K 53 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALN 130 +++ K +K ++ L+ + F +L + I +ES + N+K S + P + Sbjct: 54 SYLEK--IKKENGNTINAKLAALTKFNDFLIYKNIQSESVLSKKDNIKIQMSYASPATIT 111 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ--NIMDDQSTL 188 ++ +L + + R+ A++ +L GLRISE L+L N++ + + Sbjct: 112 KQDVEVFRQRILQNECN-------RSYAVVTVLSYAGLRISECLNLKIDDVNLVSKELIV 164 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGV- 242 R +GKG K RIV + + AI EY C + +F +G L+ V Sbjct: 165 R-EGKGSKQRIVYINTKIVDAIKEYLKERKKVACEY---------MFVSNKGNRLDRTVV 214 Query: 243 ---FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 F +Y ++ T HTLRH + ++ L +G + + + GH + TT +YT Sbjct: 215 NKLFNKYSDKI----------TPHTLRHFYCSNALESGFSVHEVANQAGHSNIHTTLLYT 264 Query: 300 N 300 N Sbjct: 265 N 265 >gi|17981816|ref|NP_536807.1| integrase [Haemophilus phage HP2] gi|145639521|ref|ZP_01795125.1| putative integrase [Haemophilus influenzae PittII] gi|13752189|gb|AAK37784.1| integrase [Haemophilus phage HP2] gi|145271312|gb|EDK11225.1| putative integrase [Haemophilus influenzae PittII] gi|309750497|gb|ADO80481.1| integrase [Haemophilus influenzae R2866] Length = 337 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 61/142 (42%), Gaps = 21/142 (14%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 I+ + G R SEA +LT +M + T + K K R VP+ E +D+ P Sbjct: 197 IVRICLATGARWSEAETLTQSQVMPYKITF-VNTKSKKNRTVPISK-------ELFDMLP 248 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278 RG+ N LR + LP H LRH+FA+H + NGG Sbjct: 249 -------------KKRGRLFNDAYESFENAVLRAEIELPKGQLTHVLRHTFASHFMMNGG 295 Query: 279 DLRSIQSILGHFRLSTTQIYTN 300 ++ ++ ILGH + T Y + Sbjct: 296 NILVLKEILGHSTIEMTMRYAH 317 >gi|261345904|ref|ZP_05973548.1| site-specific recombinase, phage integrase family [Providencia rustigianii DSM 4541] gi|282565988|gb|EFB71523.1| site-specific recombinase, phage integrase family [Providencia rustigianii DSM 4541] Length = 329 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 61/142 (42%), Gaps = 20/142 (14%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 I L G R EA L +N++ + T ++ K + R VP+ V KA+ + Sbjct: 184 ITVLCLSTGARWGEATQLRAENLLHGRVTF-MKTKNGRHRTVPISDEVMKAV----KIKE 238 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278 L N +R I K + P LP H LRH+FA H + NGG Sbjct: 239 SGLLFNADYETYRAIL-KNVKPD--------------LPHGQAVHALRHTFAAHFMMNGG 283 Query: 279 DLRSIQSILGHFRLSTTQIYTN 300 ++ ++Q I+GH + T Y + Sbjct: 284 NILTLQKIMGHATIQQTMTYAH 305 >gi|326382424|ref|ZP_08204116.1| phage integrase family protein [Gordonia neofelifaecis NRRL B-59395] gi|326199154|gb|EGD56336.1| phage integrase family protein [Gordonia neofelifaecis NRRL B-59395] Length = 377 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 92/203 (45%), Gaps = 34/203 (16%) Query: 121 KSNSLPRALNEKQAL-TLVDNVL--LHTSHETKWIDA-RNSAILYLLYGCGLRISEALSL 176 +++ P +E QAL D+ + + T+ W A R++A++ + Y GLR +E L Sbjct: 151 RASKRPYTKDELQALFEYADDEVARIGTTSRKGWQAAYRDAAMMKVAYAYGLRFNE---L 207 Query: 177 TPQNIMD--DQSTLRIQGK--------GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI- 225 T ++D R GK G R P P +++L + P + I Sbjct: 208 THLQLVDFARNPHAREFGKFGVCKVRYGKAFRGSPPKP---RSVLTVWRWTPPIIEDWIA 264 Query: 226 -------QLPLFRGIRGKPLNPGVFQRYIRQLRRY---LGLPLSTTAHTLRHSFATHLLS 275 L LF RG + V +R++RRY LG+P H+ R S+ATHLL Sbjct: 265 NGRGDPDSLDLFSSERGGLV---VGSTLLRRVRRYCVDLGIPDGVDLHSFRRSYATHLLE 321 Query: 276 NGGDLRSIQSILGHFRLSTTQIY 298 +G D R +Q +GH STT IY Sbjct: 322 DGWDPRFVQDQMGHEHASTTGIY 344 >gi|320195795|gb|EFW70420.1| Putative integrase/recombinase [Escherichia coli WV_060327] Length = 309 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 83/174 (47%), Gaps = 7/174 (4%) Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 RAL+ ++ L+ H H ++ R+ AI L G GLR E + L ++ + Sbjct: 123 RALDRQEIRALIHAAKQHPQHVRRY---RDVAIALTLCGTGLRAGELVKLERRDYDNGVL 179 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG--IRGKPLNPGVFQ 244 T+R QGKG K R + + +V KAI + + + + + + R + +PL Sbjct: 180 TVR-QGKGRKYREIHVADAVDKAIRAWLKVGADEADSALFSRIQRNGKVASQPLTTTGLT 238 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + L++ G+ T H +R +F T LL G D+ +++ + GH +STT Y Sbjct: 239 GILADLQQTSGIA-RFTPHDMRRTFITRLLEQGVDINTVRQLAGHSDISTTTRY 291 >gi|291515320|emb|CBK64530.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 407 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 60/226 (26%), Positives = 96/226 (42%), Gaps = 18/226 (7%) Query: 98 FLKYLKKRKITTESNILNMRNLKKSNSL--PRALNEKQALTLVDNVLLHTSHETKWIDAR 155 F + +K + ++ E N N + K N+ RAL++ + ++D + K I+ Sbjct: 186 FNRAIKAKIVSREKNPFNEYKISKFNTRTPKRALSKADMMKIIDA----DCSQGKEIEQF 241 Query: 156 NSAILYLLYGCG-LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 I Y CG + + +LTP NI D + Q I VPL + I +Y Sbjct: 242 AHDIFVFSYLCGGISFVDIANLTPANIADGRLIYHRQKTHGAIN-VPLSEKAKAIIGKYD 300 Query: 215 DLCP--------FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 C D ++I PL + R + V +R + + L + + T + R Sbjct: 301 SHCEQAGYLFPILDERVHI-TPLQKKNRVHKMCSRV-NVALRNIAKRLKIKATVTTYVAR 358 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 HSFAT L +G ++ I LGH L TTQIY + + D M+ Sbjct: 359 HSFATVLKKSGVNIGIISEALGHHSLKTTQIYLDSFENSQIDAAMQ 404 >gi|34335022|gb|AAQ64997.1| unknown [synthetic construct] gi|301159296|emb|CBW18811.1| bacteriophage integrase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|323131081|gb|ADX18511.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 341 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 72/156 (46%), Gaps = 34/156 (21%) Query: 153 DARNSAILYLLYGC---GLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSV 206 D+++ ++L + C G R SEA +L + S RI + KG K R VP+ Sbjct: 190 DSQSPSLLMITKICLSTGARWSEAENLQGHQV----SKYRITYTKTKGKKNRTVPI---- 241 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG--VFQRYIRQLRRYLGLPLSTTAHT 264 + YD P + RGK P F+R I+ R + LP H Sbjct: 242 ---SQDLYDEIPRN-------------RGKLFTPCRKAFERAIK--RAGIELPEGQCTHV 283 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 LRH+FA+H + NGG++ ++ ILGH + T IY + Sbjct: 284 LRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAH 319 >gi|204929529|ref|ZP_03220603.1| phage integrase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204321248|gb|EDZ06448.1| phage integrase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 341 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 72/156 (46%), Gaps = 34/156 (21%) Query: 153 DARNSAILYLLYGC---GLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSV 206 D+++ ++L + C G R SEA +L + S RI + KG K R VP+ Sbjct: 190 DSQSPSLLMITKICLSTGARWSEAENLQGHQV----SKYRITYTKTKGKKNRTVPI---- 241 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG--VFQRYIRQLRRYLGLPLSTTAHT 264 + YD P + RGK P F+R I+ R + LP H Sbjct: 242 ---SQDLYDEIPRN-------------RGKLFTPCRKAFERAIK--RAGIELPEGQCTHV 283 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 LRH+FA+H + NGG++ ++ ILGH + T IY + Sbjct: 284 LRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAH 319 >gi|154492484|ref|ZP_02032110.1| hypothetical protein PARMER_02118 [Parabacteroides merdae ATCC 43184] gi|254881869|ref|ZP_05254579.1| phage integrase [Bacteroides sp. 4_3_47FAA] gi|154087709|gb|EDN86754.1| hypothetical protein PARMER_02118 [Parabacteroides merdae ATCC 43184] gi|254834662|gb|EET14971.1| phage integrase [Bacteroides sp. 4_3_47FAA] Length = 330 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 63/259 (24%), Positives = 116/259 (44%), Gaps = 32/259 (12%) Query: 62 TIRQL---------SYT--EIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRK 106 TIRQL YT +IRA+++ K ++ ++ +++R S SF +L++ Sbjct: 79 TIRQLFKKMPKKVTDYTTEDIRAYLAVFQRKNKSSRVTIDNIRRIFS---SFFAWLEEED 135 Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166 +S + + +K + L+++ L D+ + R+ AI+ +L Sbjct: 136 YIIKSPVRRIHKVKTGTQVKEVLSDENIEQLRDS----------CTEIRDLAIIDILAST 185 Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226 G+R+ E + L ++I ++ + GKG+K RIV + K L+ Y D N + Sbjct: 186 GMRVGELVKLNREDINFNERECIVFGKGNKERIV-YFNARAKIHLQQYLASRKDRNKALF 244 Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286 + L + K L + +R+L R + + H R + AT + G + +Q + Sbjct: 245 VSLAKP--HKRLGISGVETRLRKLGRSAKI-VRVHPHKFRRTLATMAIDKGMPVEQVQRL 301 Query: 287 LGHFRLSTTQIYTNVNSKN 305 LGH ++ TT Y VN N Sbjct: 302 LGHVKIDTTMHYAMVNQSN 320 >gi|323946286|gb|EGB42318.1| phage integrase [Escherichia coli H120] Length = 335 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 70/151 (46%), Gaps = 24/151 (15%) Query: 153 DARNSAILYLLYGC---GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 D+++ ++L + C G R SEA +L + + T + KG K R VP+ Sbjct: 179 DSQSPSLLMIAKICLATGARWSEAENLQSHQVSKYRITY-TKTKGKKNRTVPI------- 230 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 +L +LP RG P F+R ++ R + LP H LRH+F Sbjct: 231 ----------SKDLYEELPKNRGKLFTPCRK-AFERAVK--RAGIELPEGQCTHVLRHTF 277 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 A+H + NGG++ ++ ILGH + T IY + Sbjct: 278 ASHFMMNGGNILVLRDILGHVDIKMTMIYAH 308 >gi|89147482|gb|ABD62601.1| integrase [uncultured bacterium] Length = 163 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 38/69 (55%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 IR + QR ++ + T HTLRHSFATHLL G ++R +Q +LGH Sbjct: 94 IRRHHITSATIQRAMKNAVTSAEIVKHATVHTLRHSFATHLLMAGTNIREVQELLGHKSA 153 Query: 293 STTQIYTNV 301 TT IYT+V Sbjct: 154 ETTMIYTHV 162 >gi|317505162|ref|ZP_07963099.1| integrase [Prevotella salivae DSM 15606] gi|315663722|gb|EFV03452.1| integrase [Prevotella salivae DSM 15606] Length = 406 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 77/298 (25%), Positives = 136/298 (45%), Gaps = 51/298 (17%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 + + I+R L L++Y+ L L Y ++K + I LS + +AFI Sbjct: 123 ERIGIDRALKTFKLRTYQ------LSLLREYVQKKHKVSDI-PLSQLD-KAFIDGFEYYL 174 Query: 83 IGDRSLKRS-----LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 DR LK S LS +++ ++ K+ + L + ++ PR++ +++ + Sbjct: 175 TIDRRLKHSSISSALSTLQTIVRMALKKGVLDFYPFLGY-SYERPKGEPRSITKEELERI 233 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGD 195 +D E +W + R L++ + C GL IS+ +L +NI+ ++ L I+G+ Sbjct: 234 ID-------LEIEWTNYRVVRDLFV-FSCFSGLAISDVRNLREENIVLEEGELCIKGRRM 285 Query: 196 KIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK-----PLNPGVFQRYI 247 K + V +LP AI+E Y RG R P N + + Sbjct: 286 KTKTPYRVQVLPPAW-AIMERY----------------RGKRAGFVFDVPTNDIILNG-M 327 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 ++R +G+ T H RH+FA+ + LS G + ++ +LGH L TTQIY V+S+ Sbjct: 328 HFIQRNIGMETPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAAVSSE 385 >gi|168184229|ref|ZP_02618893.1| CAAX amino terminal protease family protein [Clostridium botulinum Bf] gi|182672699|gb|EDT84660.1| CAAX amino terminal protease family protein [Clostridium botulinum Bf] Length = 355 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 54/195 (27%), Positives = 84/195 (43%), Gaps = 45/195 (23%) Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG--CGLRISEALSLTPQNIMDD 184 RALNE + L+++ N L +L G CGLR+ E L LT +I + Sbjct: 172 RALNENEENKLLEDF------------KSNKYYLVILLGLKCGLRLGEILGLTWSDIDEV 219 Query: 185 QSTLRIQGKGDKI----------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228 T+ I + ++ R +P+ S + +Y + +NI Sbjct: 220 NKTISINKQWKQVNPTKYNFGELKSKNSNRTIPISQSTLDELKKYKKI------VNIDNR 273 Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 LF+ K N L R L L + T H LRH++AT L+SNG D +++ +L Sbjct: 274 LFKF---KNTNSSCIC-----LNRLLKLKGYNITVHELRHTYATKLISNGVDFKTVAQLL 325 Query: 288 GHFRLSTTQIYTNVN 302 GH T + Y++VN Sbjct: 326 GHTVEQTMKTYSHVN 340 >gi|167628726|ref|YP_001679225.1| phage integrase [Heliobacterium modesticaldum Ice1] gi|167630973|ref|YP_001681472.1| phage integrase [Heliobacterium modesticaldum Ice1] gi|167591466|gb|ABZ83214.1| phage integrase [Heliobacterium modesticaldum Ice1] gi|167593713|gb|ABZ85461.1| phage integrase [Heliobacterium modesticaldum Ice1] Length = 328 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 74/289 (25%), Positives = 116/289 (40%), Gaps = 41/289 (14%) Query: 39 YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSF 98 Y + Q F F E+KIT T+ + TE +I KR + + L+ S I+ F Sbjct: 30 YGAEEHQLRRFDVFCVEQKITEPTLTK-ELTE--QWIEKRAGEAAKSQHLR--CSAIRQF 84 Query: 99 LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE------TKWI 152 +L + + +L +R S S + + L + H + + + +I Sbjct: 85 ALFLSSCGLA--AYVLPVRKNTVSQSYAPYIFSAEEL----KAIFHAADQMTPCTVSPFI 138 Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAIL 211 IL LLYGCGLR +EA L ++ D L I K +K R+VP+ S+ Sbjct: 139 HEVMPMILRLLYGCGLRSAEACHLKKCDVSLDDGVLTILNAKNEKDRLVPMSDSLADRCR 198 Query: 212 EYYD----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-----STTA 262 Y + LCP D F G + P + R+ G+ Sbjct: 199 AYSERMELLCP-DTAY-----FFPNKYGGCVEPFTIYPWFRRFLFEAGISHHGRGKGPRV 252 Query: 263 HTLRHSFATH----LLSNGGDLR----SIQSILGHFRLSTTQIYTNVNS 303 H LRH+FA H + +G DL ++ LGH +S T+ Y + + Sbjct: 253 HDLRHTFAVHSLRKMAGDGMDLYCALPALSMYLGHENISATEKYLRMTA 301 >gi|330507934|ref|YP_004384362.1| site-specific integrase/recombinase [Methanosaeta concilii GP-6] gi|328928742|gb|AEB68544.1| site-specific integrase/recombinase [Methanosaeta concilii GP-6] Length = 279 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 60/235 (25%), Positives = 106/235 (45%), Gaps = 25/235 (10%) Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 F+ +K+ ++ ++ IK + + L + +++ LK+S +P NE Sbjct: 54 FLDGLHNRKLAGSTIDNYITSIKKYHEMLGQE--------ISIPYLKRSEGIPHYFNE-- 103 Query: 134 ALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 D+V + H K + N L YGC LR SE ++ ++I TLRI+ Sbjct: 104 -----DDVRRIFCVIHNIKHLAMLNV----LFYGC-LRASELTAIDDEDIDLGLMTLRIR 153 Query: 192 -GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 GKG + VPL + EY + P ++++ + PLF RG+ + R Sbjct: 154 DGKGGRSGTVPLSNECIAVLKEYLQVRPA-IDIDGRKPLFYTDRGRRWDRKDLYRMFIIY 212 Query: 251 RRYLGLPLSTTAHTL-RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + + + H RH+ AT +++NG D+R ++ +L H + TT Y +V K Sbjct: 213 KHKSNVQKAGGLHVFSRHTPATLMIANGCDIRIVKELLRHRDIRTTLRYAHVADK 267 >gi|302389856|ref|YP_003825677.1| integrase family protein [Thermosediminibacter oceani DSM 16646] gi|302200484|gb|ADL08054.1| integrase family protein [Thermosediminibacter oceani DSM 16646] Length = 323 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 69/297 (23%), Positives = 122/297 (41%), Gaps = 48/297 (16%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS---KRRT----- 80 + LSK T+ SYE R F FL +EK I+ + +++ IR ++ KR Sbjct: 18 KNLSKRTIGSYEQSLRLFAQFL----KEKYGIEEVSKVNTGHIRQYLDYLGKRGKYTVII 73 Query: 81 -----------------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 Q + + L +K F +L ++ + + +K Sbjct: 74 DETKKEINNPENRQDFGQPLSTTTKANYLRNLKVFFNWLYGEGEIPKNPVAKIEQIKPQR 133 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 + + L+E Q L + N + ++ + RN I L G RI E LSLT +I Sbjct: 134 KVKKPLSE-QDLKRIANCFVKST----FTGYRNYVIFKFLLDTGARIQETLSLTHNDIDL 188 Query: 184 DQSTLRIQGKGDK----IRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPL 238 + ++ +K + + P + K L+Y + DL +F RG PL Sbjct: 189 KFRVVTLRNTKNKQERKVYLSPKMLQEMKNWLKYKERYVSSDL-------IFPTKRGTPL 241 Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 +++ +R + +G+ +S H LR+ FA + + NGG+ + +LGH + T Sbjct: 242 TVHSYEKQLRDAGKLVGIDIS--PHMLRNQFARYYILNGGNFPMLSKLLGHSDVKVT 296 >gi|269219930|ref|ZP_06163784.1| integrase/recombinase XerC [Actinomyces sp. oral taxon 848 str. F0332] gi|269210670|gb|EEZ77010.1| integrase/recombinase XerC [Actinomyces sp. oral taxon 848 str. F0332] Length = 160 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 70/151 (46%), Gaps = 15/151 (9%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSVRKA 209 I R + IL L GLR +E +++ ++++D L + GKG ++R VP+ + Sbjct: 9 IPPREALILRLAAFMGLRCTEIAAVSAPDLIEDLFGPALVVHGKGGRLRTVPVPAHLHGD 68 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 ++ + F L GK N + R+I +L LP T HTLRH F Sbjct: 69 LVAGFKRNGFWL-----------FPGKD-NGHLSARWISKLGGRC-LPQGWTMHTLRHRF 115 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 AT DL ++Q +LGH + TTQ Y Sbjct: 116 ATKAYRTDHDLIAVQRLLGHASIETTQRYVE 146 >gi|327470621|gb|EGF16077.1| phage integrase family integrase/recombinase [Streptococcus sanguinis SK330] Length = 328 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 60/251 (23%), Positives = 115/251 (45%), Gaps = 27/251 (10%) Query: 62 TIRQLSYTEIRAFISK----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117 +IR L+ +++R ++++ R++ K+ +++R S SF +L+ +S + + Sbjct: 88 SIRDLTTSDLRTYLARYQQERKSSKVTIDNMRRIFS---SFFGWLEDEDYILKSPVRRIH 144 Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 +K ++ L++ + L L+ + R+ A++ LL G+R+ E + L Sbjct: 145 KIKTDKTIKETLSD-EGLELLRDA---------CDKIRDLAMIDLLTSTGMRVGELVRLN 194 Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD---LNLNIQLPLFRGIR 234 ++I + + GKG+ RIV + ++ Y D D L +++ P R + Sbjct: 195 REDINFYERECVVFGKGNSERIVYFDARTKIHLINYLDSRQDDNPALFVSLSSPHDRLLI 254 Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 G GV R +RQL + L H R + AT + G + +Q +LGH ++ T Sbjct: 255 G-----GVETR-LRQLGQKADLN-KVHPHKFRRTLATRAIDKGMPIEQVQHLLGHVKIDT 307 Query: 295 TQIYTNVNSKN 305 T Y VN N Sbjct: 308 TMHYAMVNQAN 318 >gi|258592425|emb|CBE68734.1| protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 89 Score = 56.2 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 24/41 (58%), Positives = 31/41 (75%) Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T HT RHSFATHLL G D+R++Q +LGH + TT +YT+V Sbjct: 34 TCHTFRHSFATHLLEGGYDIRTVQELLGHSDVKTTMMYTHV 74 >gi|187928591|ref|YP_001899078.1| integrase family protein [Ralstonia pickettii 12J] gi|241114169|ref|YP_002973644.1| integrase family protein [Ralstonia pickettii 12D] gi|187725481|gb|ACD26646.1| integrase family protein [Ralstonia pickettii 12J] gi|240868742|gb|ACS66400.1| integrase family protein [Ralstonia pickettii 12D] Length = 704 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 65/265 (24%), Positives = 105/265 (39%), Gaps = 49/265 (18%) Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL---KKSNSLPRALNEKQALTLV 138 K+ S +L+ +++ +YL + + + +R K + R+L E Q +V Sbjct: 426 KLSPESQAYALTVLQNLYRYLNDKNYLSGNPWGGVRATNGGKPQLDVGRSLTEDQWAFVV 485 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM------------DDQS 186 + + L + + R L LLY GLR++E + T ++ D Sbjct: 486 ERLFLLERTSS---NLRLQVALPLLYATGLRLAEIVGATTADLAWRSLALPRSGERMDGW 542 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LNIQLPLF----------RGIRG 235 L + GKG ++R VP+ V A+ Y D F + I+ P+ R Sbjct: 543 WLTVVGKGSRVREVPVPDEVVHALGAYLDSRGFPSDPAQIREPVALLGHATDQAERAPWA 602 Query: 236 K--------PLNPGVFQRYIRQLRRYLGLPLSTT------------AHTLRHSFATHLLS 275 K PL PGV R I++ + L T H LRHS A+H ++ Sbjct: 603 KRDTASPAAPLTPGVLYRQIKRFFQACATELEATDPQGAARLNEASTHWLRHSHASHAIA 662 Query: 276 NGGDLRSIQSILGHFRLSTTQIYTN 300 G + +Q LGH L TT +Y Sbjct: 663 AGTPVEIMQQNLGHKSLDTTTVYVT 687 >gi|107100187|ref|ZP_01364105.1| hypothetical protein PaerPA_01001210 [Pseudomonas aeruginosa PACS2] Length = 328 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 26/157 (16%) Query: 152 IDARNSA-----ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 +DAR ++ + + G R EA +LT + + + + K ++R VP+ + Sbjct: 176 LDARTTSPHPKMVARICLATGARWGEAQALTLDRLKGN-TVIFANTKSKRVRSVPISEGL 234 Query: 207 RKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 K I +++ PF L GVF+ I L + LP +H L Sbjct: 235 AKEIRQHWQTHGPFTNCL-----------------GVFR--IVLLSTSIKLPRGQASHVL 275 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 RH+FA+H + NGG + ++Q ILGH LS T Y +++ Sbjct: 276 RHTFASHFIMNGGHIVTLQHILGHASLSMTMRYAHLS 312 >gi|324323830|gb|ADY24874.1| integrase-recombinase protein [Bacillus thuringiensis serovar finitimus YBT-020] gi|324323973|gb|ADY25016.1| integrase-recombinase protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 280 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 66/276 (23%), Positives = 128/276 (46%), Gaps = 31/276 (11%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 +E+G ++T++ Y+ R F ++ E ++Q + + + F+S Q Sbjct: 16 LEQGKREITVEDYK---RHIQNFHSWLVHENSSLQDLTRYDIQQYIYFLSGCGNQAT--- 69 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 ++ S I S++ ++ + + + +R+++ + P++L+ Q N LL Sbjct: 70 TITPKFSAIVSYVHFIDREDLLHDIKRPEVRHIRHIS--PKSLSRNQR-----NQLLRKV 122 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQST-LRIQ-GKGDKIRIVPLL 203 +++ + RN AI+YL G+RI E ++L ++I M ++S L +Q GKG R +PL Sbjct: 123 EQSE--NLRNIAIIYLTLYTGVRIFELVALNREDIEMRERSGFLTVQDGKGGISRKIPLP 180 Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 R + Y + Q LF GK L+ QR AH Sbjct: 181 VESRYHLQRY-----LQSRTDSQSALFLSNYGKRLSKRSAQRVFENY--------GIHAH 227 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 LRH++ L+++G D+ ++ ++GH ++TT+ Y Sbjct: 228 MLRHTYGRELVASGIDIATVAELMGHNDVNTTKRYA 263 >gi|126665398|ref|ZP_01736380.1| putative integrase [Marinobacter sp. ELB17] gi|126630026|gb|EBA00642.1| putative integrase [Marinobacter sp. ELB17] Length = 321 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 71/279 (25%), Positives = 120/279 (43%), Gaps = 17/279 (6%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87 ERGLS T+ + Q FL+ I++ I + ++ A++S + + S Sbjct: 40 ERGLSPATITFR---SEQVTHFLSTICGPDISLAAI---TINDVDAYLSYQGSHGWSRTS 93 Query: 88 LKRSLSGIKSFLKYLKKRKITTE-SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 L ++SF +Y + + ++ + ++ + LP +Q L+ + + + Sbjct: 94 LHTLADALRSFFRYSEAQGWSSGIAASVDAPRIYAQEDLPLGPTWEQVQQLITSFSSNNA 153 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS 205 +D R+ AI+ LL GLR E L ++ L I + K + PL P Sbjct: 154 -----VDIRDRAIVLLLAVYGLRSGEVTRLRLGDVDWVGEILHITRPKQRCTQQYPLDPE 208 Query: 206 VRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAH 263 V AIL Y + P + + + L IR PL P + LG+ + AH Sbjct: 209 VGDAILRYLKEARPRCSSRQLFMALNAPIR--PLMPKCITPIVHSRLDALGIHVPRRGAH 266 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 LRH+ A HLL+ L+ I LGH S+T++Y V+ Sbjct: 267 CLRHACARHLLAASFSLKQIGDQLGHRSASSTRVYAKVD 305 >gi|293373295|ref|ZP_06619653.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292631691|gb|EFF50311.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 383 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 74/160 (46%), Gaps = 37/160 (23%) Query: 163 LYGC--GLRISEALSLTPQNIM--DDQ--STLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 L+ C GLRIS+ +L +NI+ D Q + L +Q G +++I PL + I Sbjct: 236 LFACFSGLRISDIRALRWKNIIVEDGQFFAMLFMQKTGKELKI-PLPDKAMEII------ 288 Query: 217 CPFDLNLNIQLPLFRGIRGK--------PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 IRG P NP V + +++ G+ T HT RH+ Sbjct: 289 ---------------SIRGNDEDKVFFLPSNPTV-EDNLKKWAEAAGINKHLTFHTARHT 332 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 +AT LL+ G DL ++ +LGH ++TTQIY V K D Sbjct: 333 YATLLLTLGADLYTVSKMLGHTNVATTQIYAKVVDKKKVD 372 >gi|223369785|gb|ACM88762.1| integrase [uncultured bacterium] Length = 163 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 25/42 (59%), Positives = 31/42 (73%) Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T HT RHSFATHLL G D+ ++Q +LGH + TTQIYT+V Sbjct: 121 VTCHTSRHSFATHLLQAGRDIHTVQELLGHTDVKTTQIYTHV 162 >gi|134100181|ref|YP_001105842.1| tyrosine recombinase XerC [Saccharopolyspora erythraea NRRL 2338] gi|291006600|ref|ZP_06564573.1| tyrosine recombinase XerC [Saccharopolyspora erythraea NRRL 2338] gi|133912804|emb|CAM02917.1| tyrosine recombinase XerC [Saccharopolyspora erythraea NRRL 2338] Length = 398 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 78/191 (40%), Gaps = 51/191 (26%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDD--------QSTLRIQGKGDKIRIVPLLPSV 206 R+ A++ +L G G+R E + + +DD ++LR+ GKG K R+V L P V Sbjct: 182 RDRAMVEILVGTGVRAEELVGVN----LDDYDRPTPGGSASLRVHGKGAKDRLVALAPPV 237 Query: 207 RKAILEYYDL--------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-------- 250 A+ Y + P + PLF G ++ Q +R+L Sbjct: 238 ADAVEAYLAVRLPPTVPALPGHTGPATREPLFLTRTGARVHVSHVQAVLRRLCTTFAPDP 297 Query: 251 ----------RRYLG-----------LPL--STTAHTLRHSFATHLLSNGGDLRSIQSIL 287 R L PL S H+ RHS+ATH + G + R +Q L Sbjct: 298 DAPPPRARWLRDLLATERAAFIAEHLAPLRDSIHPHSARHSYATHAKNRGAEARQVQKDL 357 Query: 288 GHFRLSTTQIY 298 GH LSTT+ Y Sbjct: 358 GHTSLSTTEGY 368 >gi|295134620|ref|YP_003585296.1| transposase [Zunongwangia profunda SM-A87] gi|294982635|gb|ADF53100.1| putative transposase [Zunongwangia profunda SM-A87] Length = 392 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 11/111 (9%) Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 +PLL + ILE Y P N +I LP++ + +Y+R++ + + + Sbjct: 283 IPLLEEAER-ILEKYKEHPRVSNSDILLPVYSNQKT--------NQYLREITKAVKINKE 333 Query: 260 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV-NSKNGGD 308 + H RH+FAT + L+NG + ++ +LGH +LSTTQIY V +SK D Sbjct: 334 LSFHAARHTFATTVTLANGVPIETVSKLLGHTKLSTTQIYARVIDSKISND 384 >gi|315608576|ref|ZP_07883560.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] gi|315249747|gb|EFU29752.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] Length = 317 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 17/158 (10%) Query: 158 AILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAI---LEY 213 + LLY G+RISEAL++ ++ S + K K RI+P+ P ++ + L+Y Sbjct: 123 CLFRLLYSTGMRISEALNIKNGDVNFQSDSIFLTKTKNGKERIIPMNPELKVVLSQYLKY 182 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-----LSTTAHTLRHS 268 D+ P + + LF GKP + +++ R G+ H LRH+ Sbjct: 183 RDMMPVEGICKPERHLFVSGIGKPFTATTPYTFFKKILRQCGIAHKGKNQGPRVHDLRHT 242 Query: 269 FATHLL----SNGGDLRS----IQSILGHFRLSTTQIY 298 FA H L + G DL + + +LGH + T+ Y Sbjct: 243 FAVHTLQKMATEGVDLYAGLPVLSVLLGHASVRETEWY 280 >gi|157370649|ref|YP_001478638.1| integrase family protein [Serratia proteamaculans 568] gi|157322413|gb|ABV41510.1| integrase family protein [Serratia proteamaculans 568] Length = 197 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 69/153 (45%), Gaps = 7/153 (4%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R++ ++++ + G R+SE L ++ D L I + + L + K +L+ + Sbjct: 31 RDTCLIWMGFIHGCRVSELTGLRLADLDMDDGCLYISRLKNGLSTTHPLETTEKRLLQRW 90 Query: 215 ----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 C NL+ Q LF +G L+ R +R+ R GL + H LRH+ Sbjct: 91 LEKRQSCR---NLDDQDWLFLSQKGYRLSRQRIFRMLREYGRRAGLDVEAHPHMLRHACG 147 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 L NG D R IQ LGH + T +YT N+ Sbjct: 148 YALADNGADTRVIQDYLGHRNIQHTVLYTAANA 180 >gi|89147508|gb|ABD62614.1| integrase [uncultured bacterium] Length = 163 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 28/60 (46%), Positives = 36/60 (60%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 V QR +R + HTLRHSFATHLL G ++R +Q +LGH + TT IYT+V Sbjct: 103 VLQRALRTAVSASDVVKHVKVHTLRHSFATHLLLQGVNIREVQELLGHKSVETTMIYTHV 162 >gi|228949788|ref|ZP_04111998.1| Integrase-recombinase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809846|gb|EEM56257.1| Integrase-recombinase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 362 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 68/171 (39%), Gaps = 10/171 (5%) Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTL--RIQGKGDKIRIVPLLPSVRKAILEY 213 N I+ LL GLRI E + ++ + L R+ GKGDK R + P + + I EY Sbjct: 190 NYMIILLLVSTGLRIQEVANARMGDLFRAEGKLWLRVIGKGDKPREAYISPHLFECISEY 249 Query: 214 YDLCPFDLNLN--IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTL 265 LN PL + N + + +P TAHT Sbjct: 250 RSRKGLKTQLNRLDNSPLIVSNHLRKFNSTYLSNKVTSILSQARIPCVEQRENPITAHTF 309 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 RH FA N +L IQ LGH +TT+IY + K + + DQ Sbjct: 310 RHGFAIMAAENDVELLRIQQTLGHASANTTKIYLEKHMKRKHNAALSFADQ 360 >gi|317124016|ref|YP_004098128.1| integrase [Intrasporangium calvum DSM 43043] gi|315588104|gb|ADU47401.1| integrase family protein [Intrasporangium calvum DSM 43043] Length = 329 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 75/295 (25%), Positives = 114/295 (38%), Gaps = 40/295 (13%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYT---EEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85 +GLS T+ +Y R + +L T +KI + I + T + R Sbjct: 20 KGLSPNTIAAYRDTWRLLIKYLTASTGVHADKIDLGMIDAEAITTFLDHLEADRGNSAST 79 Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-----ALNEKQALTLVDN 140 R+ + L+ I++ L I + + PR ++ E QAL Sbjct: 80 RNAR--LTAIRAVLAVTLPDHPEHAGTIARVLAVPTRRGTPRTVQFLSVEETQAL----- 132 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-LRIQGKGDKIRI 199 L W R+ A+L L GLR+SE +LT +I + GKG K R Sbjct: 133 --LDAPDPNTWTGRRDRALLTLAIQTGLRVSELTALTTNDIHTGTGAHVTCTGKGRKYRA 190 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 PL S+ +L Y L P F G RG+ L+ +R +L +++ Sbjct: 191 TPLT-SITLTVLTPY------LAERAARPGAAAFPGPRGQHLSRDALER---RLAKHVST 240 Query: 257 PLS---------TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 T HTLRH+ A LL G D+ I LGH S+T +Y + + Sbjct: 241 ATEHCPSLGGKHVTMHTLRHTAAMRLLQAGVDVAVIALWLGHENTSSTDVYLHAD 295 >gi|257438273|ref|ZP_05614028.1| integrase/recombinase, phage integrase family [Faecalibacterium prausnitzii A2-165] gi|257199350|gb|EEU97634.1| integrase/recombinase, phage integrase family [Faecalibacterium prausnitzii A2-165] Length = 327 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 56/248 (22%), Positives = 111/248 (44%), Gaps = 25/248 (10%) Query: 64 RQLSYTEIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119 +Q++ ++R +++ +RR+ K+ +++R LS SF +L+ +S + + + Sbjct: 89 QQITTDDLRRYLTDYQTQRRSSKVTIDNIRRILS---SFFSWLEDEDFIVKSPVRRIHKV 145 Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 K + + ++ + DN R+ AI+ LL G+R+ E ++L + Sbjct: 146 KTAKIIRETYTDEALELMRDNCST----------VRDLAIIDLLASSGMRVGELVTLNRE 195 Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKP 237 +I ++ + GKG+K R+V + + Y D + LF ++ + Sbjct: 196 DINFNERECVVFGKGNKERLVYFDARTKIHLQNY-----LDERSDSNPALFVTLKEPHER 250 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L G + +R+L R L L H R + AT + G + +Q +LGH ++ TT Sbjct: 251 LMIGGVETMLRELGRRLKLN-KVHPHKFRRTLATSAIDKGMPIEQVQQLLGHQKIDTTMH 309 Query: 298 YTNVNSKN 305 Y V +N Sbjct: 310 YAMVKQQN 317 >gi|323343426|ref|ZP_08083653.1| integrase [Prevotella oralis ATCC 33269] gi|323095245|gb|EFZ37819.1| integrase [Prevotella oralis ATCC 33269] Length = 407 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 20/153 (13%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYY 214 A ++ LY CGLR + LT +NI L+ + KG ++P + +L Sbjct: 255 AFIFCLY-CGLRFCDVKDLTYKNIDYTNRLLKFEQNKTKGHSAHSGVVIP-LNDGLLSLI 312 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL---GLPLSTTAHTLRHSFAT 271 P DLN +I N ++ + ++R++ G+ + H RHSFA Sbjct: 313 GDAPDDLNSSI------------FNLPSYESCCKSVKRWVKRAGINKHISWHCARHSFAV 360 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 ++L+NG +++++ S+LGH L T+ YT K Sbjct: 361 NILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393 >gi|304436275|ref|ZP_07396258.1| phage integrase family integrase/recombinase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370732|gb|EFM24374.1| phage integrase family integrase/recombinase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 328 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 60/278 (21%), Positives = 120/278 (43%), Gaps = 26/278 (9%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 G S TL YE R L + +K + T + + + ++ + ++ +++ Sbjct: 65 GCSSKTLHYYEKSIRTMLAHV-----QKEVVHTTTEDLRSYLTSYQERGGLSRVTVDNVR 119 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 R LS SF +L+ +S + + +K + ++ ++++ + D + HE+ Sbjct: 120 RILS---SFFAWLEDEDYIVKSPVRRIHRVKTAENIKATYSDEELEAMRD-----SCHES 171 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 R+ A++ +L G+R+ E + L ++ ++ + GKG+K RIV + Sbjct: 172 -----RDLAMIDMLASTGMRVGEMVRLNRSDVDFNERECVVLGKGNKERIVYFDARTKIH 226 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 + Y + + + LF G+R L+ + +R L R +G+ H R Sbjct: 227 LQAY-----LESRTDGEAALFVGLRSPRSRLSISGIESRLRTLGRRIGME-KVHPHKFRR 280 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + AT + G + +Q +LGH R+ TT Y V N Sbjct: 281 TLATRAIDKGMPIEQLQQLLGHKRIDTTLHYAMVKQSN 318 >gi|237725748|ref|ZP_04556229.1| integrase [Bacteroides sp. D4] gi|229435556|gb|EEO45633.1| integrase [Bacteroides dorei 5_1_36/D4] Length = 409 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 102/206 (49%), Gaps = 26/206 (12%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLT 177 KK+ + PRAL+ +++ + +V + ++ I AR+ L+GC G+ ++ +S+T Sbjct: 217 KKTETTPRALS-RESFERIRDVEI-PAYRKSHILARD----MFLFGCYTGVCYADVVSIT 270 Query: 178 PQNIMDDQST---LRIQGKGDKIRI-VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233 +N+ D+ L+ + K +++R V LLP I +Y+ + + PL Sbjct: 271 HENLYTDEDGALWLKYRRKKNELRASVKLLPEAVTLIEKYHSE-----DRDTLFPL---- 321 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRL 292 L+ +R+++ L G+ H RHSFA+ + L G + +I +LGH + Sbjct: 322 ----LHWPNLRRHMKALATLAGIKDDLCYHQARHSFASLITLEAGVPIETISRMLGHSDI 377 Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTH 318 STTQ+Y V+ K + M + + TH Sbjct: 378 STTQVYARVSPKKLFEDMDKFIEATH 403 >gi|228942827|ref|ZP_04105346.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228952547|ref|ZP_04114624.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228976709|ref|ZP_04137133.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228783010|gb|EEM31165.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228807158|gb|EEM53700.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228816841|gb|EEM62947.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326943508|gb|AEA19401.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar chinensis CT-43] Length = 365 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 60/196 (30%), Positives = 95/196 (48%), Gaps = 26/196 (13%) Query: 108 TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167 TT+ NIL ++ K+ + + KQA L+H + + R+ I+ +LY G Sbjct: 161 TTKINILKLKEPKRK---IKTITTKQA------ELIHIACN----NIRDELIIRILYEGG 207 Query: 168 LRISEALSLTPQ--NIMDDQSTLRIQG--KGDKIRIV---PLLPSVRKAILEYYDLCPFD 220 LR SE LSL + NI D T+R G+K ++ + + I++Y+ D Sbjct: 208 LRASELLSLWIEDFNINDGSITVRESKTQAGEKRKVYVSNETMNLFQDYIIDYH---TND 264 Query: 221 LNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279 ++ N +G +G+P+ Q IR L + ++ TAHTLRH+ AT L G D Sbjct: 265 VDSNHVFINLKGKNKGQPMQYWALQAVIRILSK--KTKINFTAHTLRHTCATQLYDLGMD 322 Query: 280 LRSIQSILGHFRLSTT 295 IQ +LGH ++ TT Sbjct: 323 AGIIQKLLGHAQVQTT 338 >gi|298528846|ref|ZP_07016249.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298529859|ref|ZP_07017261.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298529886|ref|ZP_07017288.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509233|gb|EFI33137.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509260|gb|EFI33164.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298510282|gb|EFI34185.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 338 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 75/291 (25%), Positives = 119/291 (40%), Gaps = 27/291 (9%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 Q L +G+S T+ +Y FL F + I I LS I F+ + + Sbjct: 13 QYLPRTKGVSSNTILAYRHTFSLFLPFASKTLGRDINSLEIEHLSTQLILDFLDHLESGR 72 Query: 83 IGD-RSLKRSLSGIKSF---LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R+ L+ KS +++L I+++ + L L ++ L ++ Sbjct: 73 NNSARTRGHRLAVFKSLARMIRFLYPEHKLLADRIISIPQKRFPKKLAAFLTHEEVLLVL 132 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D++ L S R+ I++LLY G R E+ SL + TL I GKG++ R Sbjct: 133 DSINLKKSGA-----FRDYTIIHLLYNSGARAEESASLRLDYFDPHKKTLAILGKGNRYR 187 Query: 199 IVPLLPSVRKAILEY---YDLCPFDLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYL 254 + L P + + Y Y P L+ N LF R + G++ R R+YL Sbjct: 188 QIELWPKTVQLMSMYIQKYRPRPKPLHQNT---LFLNQRRQGFTRNGIY----RLCRKYL 240 Query: 255 GLPLSTT-------AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 L H RHS A ++L G L I++ LGH L +T +Y Sbjct: 241 SLVFEENRFQGLNPVHCFRHSCAINMLGTGFSLTDIKNHLGHENLQSTMVY 291 >gi|237716536|ref|ZP_04547017.1| integrase [Bacteroides sp. D1] gi|262405315|ref|ZP_06081865.1| integrase [Bacteroides sp. 2_1_22] gi|294644634|ref|ZP_06722387.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294810165|ref|ZP_06768833.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|229442519|gb|EEO48310.1| integrase [Bacteroides sp. D1] gi|262356190|gb|EEZ05280.1| integrase [Bacteroides sp. 2_1_22] gi|292640071|gb|EFF58336.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294442629|gb|EFG11428.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] Length = 409 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 93/192 (48%), Gaps = 26/192 (13%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLT 177 K+S+ PRAL+ +++ + +V + H I AR+ L+GC G+ ++ +S+T Sbjct: 217 KQSDKTPRALS-RESFEKIRDVEIE-PHRKSHILARD----MFLFGCYTGVSYADVISIT 270 Query: 178 PQNI-MDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233 +N+ DD L ++ K + V LLP I +Y+ + + PL R Sbjct: 271 DENLYTDDNGALWLKYRRKKNEHRASVKLLPEAIALIEKYHSE-----DRDTLFPLLRW- 324 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRL 292 P + +R+++ L G+ H RHSFA+ + L G + +I +LGH + Sbjct: 325 ------PNL-RRHMKALAALAGIKDDLCYHQARHSFASLITLEAGVPIETISRMLGHSDI 377 Query: 293 STTQIYTNVNSK 304 STTQ+Y V+ K Sbjct: 378 STTQVYARVSPK 389 >gi|90580685|ref|ZP_01236489.1| Tn554, transposase A [Vibrio angustum S14] gi|90438142|gb|EAS63329.1| Tn554, transposase A [Vibrio angustum S14] Length = 359 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 60/242 (24%), Positives = 111/242 (45%), Gaps = 31/242 (12%) Query: 79 RTQKIGDRSLKR--SLSG-IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 R+ K+ D + R + SG KSFL ++ K + +S +L ++ K+ +Q + Sbjct: 120 RSGKVADLKIYRDGAFSGKYKSFLHHITSGK-SIQSRVLKLKEPKRGLKTLTKPQVQQVI 178 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQG- 192 +N+ R+ I+ L+Y G+RI + L L ++I D+Q +R + Sbjct: 179 EACNNL-------------RDKFIICLMYETGMRIGQVLGLRHEDIKSGDNQIAIRFRSN 225 Query: 193 -------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQ 244 K + +V + S+ +Y+ ++ + + + L+ G G P+ G Sbjct: 226 NENNARSKSREDNLVDVSSSIVSLYTDYFIHEYGEVESDYVFVNLWDGEIGAPMKYGSVI 285 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303 +++ + G+ + T H RH+ AT LL G DL IQ LGH + TT IY +++S Sbjct: 286 TLFKRISKKTGIDV--TPHIFRHTHATELLRAGWDLAYIQKRLGHSDIQTTANIYAHLSS 343 Query: 304 KN 305 + Sbjct: 344 DD 345 >gi|312890652|ref|ZP_07750186.1| integrase family protein [Mucilaginibacter paludis DSM 18603] gi|311296818|gb|EFQ73953.1| integrase family protein [Mucilaginibacter paludis DSM 18603] Length = 409 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 74/156 (47%), Gaps = 16/156 (10%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQS----TLRIQGKGDKIRIVPLLPSVRKAILEYYD 215 ++ C GL + +LTP N++ Q + + K + VPLLP + I++ Y Sbjct: 254 FVFSCYTGLAYVDVYNLTPANLVKGQDGNLWIMTSRQKTNTAVKVPLLPKALE-IIDKYK 312 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274 P + LP+ + + LN Y++++ + T H RH+FAT + L Sbjct: 313 GHPQAIAEGKLLPV---LTNQKLNS-----YLKEIADMCAILKPLTFHIARHTFATTITL 364 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 +NG + S+ +LGH +LSTTQ+Y V D M Sbjct: 365 TNGVPIESVSKMLGHTKLSTTQVYAKVVESKLSDDM 400 >gi|315425752|dbj|BAJ47407.1| conserved hypothetical protein [Candidatus Caldiarchaeum subterraneum] Length = 355 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 69/281 (24%), Positives = 120/281 (42%), Gaps = 44/281 (15%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T ++Y R+F+ F + + ++ FI R + + +S++ Sbjct: 38 TAENYRAAMRRFVTTCGFSD----LVDAAMRAEEKDLVLFIRHLRDEGLAPQSIRLHYQA 93 Query: 95 IKSFLK-YLKKRKITTESNIL-NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152 +KSFL Y + + N+L RN++ + ++PR +V+ VL + + TK + Sbjct: 94 VKSFLSLYARPINWSRVENLLPKKRNVRFNEAVPR--------DVVEAVLENMDNSTKRL 145 Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 ++L++ GLRI EALSL ++I +D I K + R VPL + +A Sbjct: 146 ------AIWLIWATGLRIGEALSLRARDIDFTIDPPKLTVISEKTHEPREVPLPTDIAEA 199 Query: 210 ILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNP-------GVFQRYI----RQLRRYLGLP 257 + ++ L P D + RG P P F+ + R R G+ Sbjct: 200 LKQHLQRLQPGDFIFH--------PRGNPSKPLARTKLRAAFRSALIKANRAERDKSGIG 251 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 T H LR S+ T+L+ G + + +LGH R+ Q Y Sbjct: 252 WRYTIHGLRRSYETNLVRAGVNSMVVGLLLGH-RIGIEQHY 291 >gi|38638105|ref|NP_943215.1| resolvase [Erwinia amylovora] gi|37682003|gb|AAQ97890.1| ResD [Erwinia amylovora] gi|323700929|gb|ADY00082.1| resolvase [Escherichia coli] Length = 246 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 94/219 (42%), Gaps = 42/219 (19%) Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170 ++ L +R + LP+ L + + V D R + L+ G RI Sbjct: 30 ADALALREMASQADLPKYLLAPEVSVFLRYV----------PDLRQQVLFDTLWNTGARI 79 Query: 171 SEALSLTPQNIMDDQS-------TL--RIQGKG------DKIRIVPLL-PSVRKAILEYY 214 +EAL+LT + D S TL R +G+G + R+VPL P + + E+ Sbjct: 80 NEALALTGASFQLDGSRPFVRLKTLKQRQRGRGRPGKDEEVFRLVPLTDPQYVRKVREFL 139 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR-YIRQL-----RRYLGLPLSTTAHTLRHS 268 L + Q L+ P+ R +IR+ R + + T HT RHS Sbjct: 140 T----TLRIGKQQLLW------PVQSDNTPRNWIRKALDLAKRDSVTFSIPVTCHTFRHS 189 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 F HL+ +G L+ +Q+ GH RL TT+ YT V + + G Sbjct: 190 FCMHLIQHGVPLKVVQAYAGHSRLETTETYTRVFALDVG 228 >gi|13358093|ref|NP_078367.1| integrase-recombinase protein [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762050|ref|YP_001752614.1| integrase-recombinase protein [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920189|ref|ZP_02931574.1| integrase-recombinase protein [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|186701629|ref|ZP_02971333.1| integrase-recombinase protein [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|11356975|pir||C82878 integrase-recombinase protein UU529 [imported] - Ureaplasma urealyticum gi|6899533|gb|AAF30942.1|AE002152_1 integrase-recombinase protein [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827627|gb|ACA32889.1| integrase-recombinase protein [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902566|gb|EDT48855.1| integrase-recombinase protein [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|186700862|gb|EDU19144.1| integrase-recombinase protein [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 251 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 52/213 (24%), Positives = 102/213 (47%), Gaps = 30/213 (14%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 LS K++LK++ + ++ ++ M KK + L L +++N+ ++ + Sbjct: 55 LSAFKAYLKFINHK----DAILIVMP--KKEIKVKEFLTWDNFLKIINNI-----NQATF 103 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211 + + IL +L+ G+R E L L ++I +++ L+I GKG K R V L ++ I Sbjct: 104 LGFQKYLILRILFETGIRSCELLKLEIKDIYENK--LKIHGKGKKERFVYLSNDLQNNIK 161 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 +Y I+ K L ++ +++ R + + T H LR SFA Sbjct: 162 KY----------------IGQIKTKYLFNFSYKNLYQKVTR-IKTNIRLTPHILRRSFAN 204 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 H ++NG ++ + ++GH +++T +Y N SK Sbjct: 205 HCINNGINIYDLSLVMGHNNINSTSLYLNKESK 237 >gi|260171385|ref|ZP_05757797.1| transposase [Bacteroides sp. D2] gi|315919698|ref|ZP_07915938.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313693573|gb|EFS30408.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 308 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 83/187 (44%), Gaps = 42/187 (22%) Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-------PLL---PSVRKA 209 +Y+ GLRI E +LT +I + + I+ ++I I+ L+ P + + Sbjct: 134 IYICLSTGLRIGEVCALTWDDINIELGIISIKRTIERIYIIDGEKRHTELIINTPKTKNS 193 Query: 210 ILEYYDLCPFDLNL-NIQLPLFRGIRG---------KPLNPGVFQRYIRQLRRYLGLPLS 259 I E P L I PL + + G KP P ++ Y ++L + L +P Sbjct: 194 IRE----IPITKELIRILKPLKKIVNGNYYILTNEEKPTEPRTYRNYYKKLMKDLNIP-E 248 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHSFAT + + D +++ ILGH +STT +++Y HP Sbjct: 249 LKFHGLRHSFATRCIESNCDYKTVSVILGHSNISTT---------------LDLY--VHP 291 Query: 320 SITQKDK 326 ++ QK K Sbjct: 292 NMEQKKK 298 >gi|158340586|ref|YP_001521580.1| tyrosine recombinase XerC [Acaryochloris marina MBIC11017] gi|158310827|gb|ABW32441.1| tyrosine recombinase XerC [Acaryochloris marina MBIC11017] Length = 348 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 72/150 (48%), Gaps = 3/150 (2%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR-IVPLLPSVRKAILE 212 AR+ A++ LL+ GLR SE + ++ +Q L I GKG R + L S AI E Sbjct: 171 ARDFAMMTLLWEAGLRRSELVGCDVRHFDSEQKRLSILGKGRNEREWIDLTESGVLAISE 230 Query: 213 YYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS-FA 270 + L + L + + L R G L+ R +R L + G+ + H +RHS Sbjct: 231 WLKLREVYALTEPLFISLDRANWGSRLSGTSVYRIVRALAKKAGVSENFGPHKVRHSGTT 290 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 T+L GGDLR Q+ H L+T + Y + Sbjct: 291 TYLEMTGGDLRGAQAYSRHANLNTLKFYDD 320 >gi|134287698|ref|YP_001109864.1| phage integrase family protein [Burkholderia vietnamiensis G4] gi|134132348|gb|ABO60083.1| phage integrase family protein [Burkholderia vietnamiensis G4] Length = 573 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 73/294 (24%), Positives = 123/294 (41%), Gaps = 39/294 (13%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 + LS LT + D + FL T + + R + T+ R F+ + RS+ Sbjct: 259 KALSSLTTR----DATDYRAFLRRPTPRERWVGPPRPRTSTDWRPFV-----DNLSARSI 309 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT--- 145 +L+ + + ++L +++ + ++ ++ A+ A T + +L T Sbjct: 310 AHALAVLSAMFRWLVEQRYVVANPFAGIKVRGSKRAM--AVETAHAFTEGEWLLTRTIAN 367 Query: 146 --SHETKWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDDQST---LRIQGKGDKI 197 W A + ++L Y GLRISE + T +N+ D + L + GKG K Sbjct: 368 GLEWSYGWQAAAAQRLRFMLDFGYATGLRISELANATLRNVEVDAAGDHWLHVTGKGGKP 427 Query: 198 RIVPLLPSVRKAILEYYD---LCPFDLNLNIQLPLF----RGIRG-KPLN-PGVFQRYIR 248 V L P R A+ Y L N PL G G KPL V +R+ R Sbjct: 428 ARVTLTPLARAALDRYLQERGLAVSRARWNPVTPLIGSLDDGDAGIKPLRLWEVMRRFFR 487 Query: 249 QLRRYL---GLPLS-----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 Q + + PL+ T H +RH+ ATH ++ G +L +++ L H +ST Sbjct: 488 QAAQIIENDHPPLAEKLRQATPHWMRHTHATHAIAKGVELSAVRDNLRHASIST 541 >gi|167746743|ref|ZP_02418870.1| hypothetical protein ANACAC_01455 [Anaerostipes caccae DSM 14662] gi|167653703|gb|EDR97832.1| hypothetical protein ANACAC_01455 [Anaerostipes caccae DSM 14662] Length = 351 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 56/250 (22%), Positives = 114/250 (45%), Gaps = 16/250 (6%) Query: 60 IQTIRQLSYTE-IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI--TTESNILNM 116 I+++ Y E ++ ++S + + +R + R +S +++F Y KR++ T + +++M Sbjct: 82 IESVDLEEYMEYLKTYVSDDKRMQNTERGIFRKMSSLRTFYAYYYKRQLIKTNPTLLVDM 141 Query: 117 RNLKKSNSLPRALNEKQALTLV-----DNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171 + + + +E +L DN+ + R+ AI+ LL G G+R+S Sbjct: 142 PRIHEKEIIRLEADEVASLLDFIEKGGDNLTGQKRMYYEKTKERDLAIITLLLGTGIRVS 201 Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQ 226 E + L ++ + L + KG K V V A+L+Y + + P + + N Sbjct: 202 ELVGLDMNDVDFKNNGLHLIRKGRKEMTVYFGDEVSDALLQYIEGSRSKIIPREGHEN-- 259 Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286 LF ++ K + Q +++ R + T H LR ++ T L D+ + + Sbjct: 260 -ALFYSMQRKRIGVQAVQNLVKKYARQVTPLKKITPHKLRSTYGTALYEETDDIYLVAEV 318 Query: 287 LGHFRLSTTQ 296 LGH ++TT+ Sbjct: 319 LGHNDVNTTR 328 >gi|158339787|ref|YP_001520794.1| tyrosine recombinase XerC, putative [Acaryochloris marina MBIC11017] gi|158310028|gb|ABW31644.1| tyrosine recombinase XerC, putative [Acaryochloris marina MBIC11017] Length = 360 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 72/150 (48%), Gaps = 3/150 (2%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR-IVPLLPSVRKAILE 212 AR+ A+L LL+ GLR SE + ++ +Q L I GKG R + L S AI E Sbjct: 182 ARDFAMLTLLWEAGLRRSELVGCDVRHFDSEQKRLSILGKGRNEREWIDLTESGVLAISE 241 Query: 213 YYDLCP-FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS-FA 270 + + + L + + L R G L+ R +R L + G+ + H +RHS Sbjct: 242 WLEKREVYALTEPLFISLDRANWGSRLSGTSVYRIVRALAKKAGVSENFGPHKIRHSGTT 301 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 T+L GGDLR Q+ H L+T + Y + Sbjct: 302 TYLEMTGGDLRGAQAYSRHANLNTLKFYDD 331 >gi|261402720|ref|YP_003246944.1| integrase family protein [Methanocaldococcus vulcanius M7] gi|261369713|gb|ACX72462.1| integrase family protein [Methanocaldococcus vulcanius M7] Length = 323 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 8/152 (5%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R++ I+ LL+ G R+SE L+L +++ ++ +RI ++ + S +L +Y Sbjct: 159 RDALIVRLLWDTGARVSEILNLRYKDVDFNEGIIRITNTKNREERKVVCASETLELLRHY 218 Query: 215 DLCPFDLNLNIQLPLFRGIRG----KPLNPGVFQRYIRQLRRYLGLPLST--TAHTLRHS 268 C F++ + LF+ RG K VF++ + +L++ +P + H+LRH Sbjct: 219 --CQFNIRQGPEDYLFQNNRGGRVRKDWISEVFRKAVDELKKEGKIPPNKRIVIHSLRHG 276 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 A LL G L ++ LGH L T Y++ Sbjct: 277 RAVDLLEKGLPLDVVKEYLGHRSLEVTLFYSH 308 >gi|160887306|ref|ZP_02068309.1| hypothetical protein BACOVA_05324 [Bacteroides ovatus ATCC 8483] gi|156107717|gb|EDO09462.1| hypothetical protein BACOVA_05324 [Bacteroides ovatus ATCC 8483] Length = 308 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 83/187 (44%), Gaps = 42/187 (22%) Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-------PLL---PSVRKA 209 +Y+ GLRI E +LT +I + + I+ ++I I+ L+ P + + Sbjct: 134 IYICLSTGLRIGEVCALTWDDINIELGIISIKRTIERIYIIDGEKRHTELIINTPKTKNS 193 Query: 210 ILEYYDLCPFDLNL-NIQLPLFRGIRG---------KPLNPGVFQRYIRQLRRYLGLPLS 259 I E P L I PL + + G KP P ++ Y ++L + L +P Sbjct: 194 IRE----IPITKELIRILKPLKKIVNGNYYILTNEEKPTEPRTYRNYYKKLMKDLNIP-E 248 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHSFAT + + D +++ ILGH +STT +++Y HP Sbjct: 249 LKFHGLRHSFATRCIESNCDYKTVSVILGHSNISTT---------------LDLY--VHP 291 Query: 320 SITQKDK 326 ++ QK K Sbjct: 292 NMEQKKK 298 >gi|294491667|gb|ADE90423.1| integrase/recombinase, phage integrase family [Escherichia coli IHE3034] gi|323161587|gb|EFZ47473.1| integrase [Escherichia coli E128010] Length = 334 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 22/143 (15%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 + L G R SEA L + I+ ++ T ++ K + R VP+ +V +AI Sbjct: 185 VALLCLSTGARWSEACKLRGEQIVHNRVTF-LETKNGRKRTVPISQAVCEAIKTRETGSL 243 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-GLPLSTTAHTLRHSFATHLLSNG 277 F++ ++ + L+R LP AH LRH+FA+H + NG Sbjct: 244 FEVK--------------------YREFCLALKRVKPDLPKGQAAHVLRHTFASHFVMNG 283 Query: 278 GDLRSIQSILGHFRLSTTQIYTN 300 G++ ++Q ILGH + T Y + Sbjct: 284 GNIIALQKILGHATIQQTMAYAH 306 >gi|171057465|ref|YP_001789814.1| integrase family protein [Leptothrix cholodnii SP-6] gi|170774910|gb|ACB33049.1| integrase family protein [Leptothrix cholodnii SP-6] Length = 333 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 99/231 (42%), Gaps = 21/231 (9%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 + R L+ ++ F+++L++ T E + P +E + L+ V Sbjct: 78 TAARRLATLRPFMRWLQQFDPTVEVPDDSSFGPIPRRVAPHIYSEAEIAALI--VAARRL 135 Query: 147 HETKWIDARNSAILY-LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLP 204 + + A A L+ L+ GLR+SEA++L + + L IQ K K R+VPL P Sbjct: 136 GPSDGLRAATYATLFGLIASAGLRVSEAINLADSDADLEGRVLTIQQTKFGKSRMVPLHP 195 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLF---RGI-RGKPLNPGVFQRYIRQLRRYLGL---- 256 SV + Y L + Q+ F RG+ RGKPL R QLR LG Sbjct: 196 SVIGPLAAYRALRRQHVQPRPQMTFFVGSRGVRRGKPLGDRQVHRMFCQLREQLGWIDRG 255 Query: 257 -PLSTTAHTLRHSFATHLL----SNGGDLR----SIQSILGHFRLSTTQIY 298 H LRHSFA + G +L ++ + +GH +S+T Y Sbjct: 256 GHGRPRVHDLRHSFAVRRMILWHQQGANLDQRMLALSTYMGHINISSTYWY 306 >gi|27383455|ref|NP_774985.1| resolvase [Citrobacter freundii] gi|216967835|ref|YP_002333343.1| ResD [Klebsiella pneumoniae] gi|27261308|gb|AAN87649.1| resolvase [Citrobacter freundii] gi|215398007|gb|ACJ65284.1| resD [Klebsiella pneumoniae] Length = 242 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 94/219 (42%), Gaps = 42/219 (19%) Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170 ++ L +R + LP+ L + + V D R + L+ G RI Sbjct: 26 ADALALREMASQADLPKYLLAPEVSVFLRYV----------PDLRQQVLFDTLWNTGARI 75 Query: 171 SEALSLTPQNIMDDQS-------TL--RIQGKG------DKIRIVPLL-PSVRKAILEYY 214 +EAL+LT + D S TL R +G+G + R+VPL P + + E+ Sbjct: 76 NEALALTGASFQLDGSRPFVRLKTLKQRQRGRGRPGKDEEVFRLVPLTDPQYVRKVREFL 135 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR-YIRQL-----RRYLGLPLSTTAHTLRHS 268 L + Q L+ P+ R +IR+ R + + T HT RHS Sbjct: 136 T----TLRIGKQQLLW------PVQSDNTPRNWIRKALDLAKRDSVTFSIPVTCHTFRHS 185 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 F HL+ +G L+ +Q+ GH RL TT+ YT V + + G Sbjct: 186 FCMHLIQHGVPLKVVQAYAGHSRLETTETYTRVFALDVG 224 >gi|317131475|ref|YP_004090789.1| integrase family protein [Ethanoligenens harbinense YUAN-3] gi|315469454|gb|ADU26058.1| integrase family protein [Ethanoligenens harbinense YUAN-3] Length = 330 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 61/283 (21%), Positives = 123/283 (43%), Gaps = 36/283 (12%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK----RRTQKIGD 85 G S+ +L+ Y+ R ++ +A + +R++ ++R +++ R + K+ Sbjct: 67 GCSEKSLKYYDATIRHMIVDIA---------KPVREIDTGDLRIYLANYQKLRNSSKVTI 117 Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 +++R S SF +L+ +S + + +K ++ +++ L D Sbjct: 118 DNMRRIFS---SFFGWLEDEDYILKSPVRRIHKIKTEKTIKDTFSDEGLEKLRD------ 168 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 + R+ A++ LL G+R+ E + L +++ + + GKG K R+V Sbjct: 169 ----ACDELRDLAMVDLLASTGMRVGELVQLNREDMNFHERECLVLGKGGKERMVYFDAR 224 Query: 206 VRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 + + Y D D L +++ P R + G GV R IR++ + L Sbjct: 225 TKIHLRNYLDSRSDDNPALFVSLTSPHERLLIG-----GVETR-IREIGKNAALQ-KVHP 277 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 H R + AT + G + +Q +LGH ++ TT Y VN +N Sbjct: 278 HKFRRTLATRAIDKGMPIEQVQRLLGHVKIDTTMHYAMVNQEN 320 >gi|169825072|ref|YP_001692683.1| putative integrase [Finegoldia magna ATCC 29328] gi|167831877|dbj|BAG08793.1| putative integrase [Finegoldia magna ATCC 29328] Length = 327 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 53/250 (21%), Positives = 113/250 (45%), Gaps = 27/250 (10%) Query: 63 IRQLSYTEIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118 +R++ ++R +++ ++ + K+ +++R S SF +L+ +S + + Sbjct: 88 VREIETNDLREYLTGYQKEKNSSKVTIDNIRRIFS---SFFSWLEDEDYIIKSPVRRIHR 144 Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178 +K + ++ +++ T+ D+ + R+ A++ +L G+RI E + L Sbjct: 145 VKSATTIKETYSDENLETMRDSCS----------ELRDLALIDILASTGMRIGELVHLNR 194 Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD---LNLNIQLPLFRGIRG 235 ++I ++ + GKG K R+V + + EY + D L ++++ P R Sbjct: 195 KDINFEERECVVFGKGSKERMVYFDARTKIHLQEYLNSRKDDNPALFVSLKAPYDR---- 250 Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 + G + +R + R LG+ H R + AT + G + +Q +LGH R+ TT Sbjct: 251 --MKIGGIEARLRGIGRNLGIE-KVHPHKFRRTLATMAIDKGMPIEQLQQLLGHKRIDTT 307 Query: 296 QIYTNVNSKN 305 Y V N Sbjct: 308 LQYAMVKQSN 317 >gi|324993830|gb|EGC25749.1| phage integrase family integrase/recombinase [Streptococcus sanguinis SK405] gi|324994849|gb|EGC26762.1| phage integrase family integrase/recombinase [Streptococcus sanguinis SK678] gi|327474704|gb|EGF20109.1| phage integrase family integrase/recombinase [Streptococcus sanguinis SK408] Length = 328 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 65/283 (22%), Positives = 121/283 (42%), Gaps = 36/283 (12%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS----KRRTQKIGD 85 G S+ +L+ Y+ LI L IR L+ ++R +++ +R++ K+ Sbjct: 65 GCSEKSLKYYKIVIENMLISLK---------TAIRDLTTGDLRTYLAHYQQERKSSKVTI 115 Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 +++R S SF +L+ +S + + +K ++ +++ L D Sbjct: 116 DNMRRIFS---SFFGWLEDEDYILKSPVRRIHKIKTDKTIKETFSDEGLELLRD------ 166 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 + R+ A++ LL G+R+ E + L ++I + + GKG+ RIV Sbjct: 167 ----ACDEIRDLAMIDLLASTGMRVGELVRLNREDINFYERECLVFGKGNSERIVYFDAR 222 Query: 206 VRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 + ++ Y D D L +++ P R + G GV R +RQ+ L Sbjct: 223 TKIHLINYLDNRQDDNPALFVSLSFPYNRLLIG-----GVETR-LRQIGEKADLN-KVHP 275 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 H R + AT + G + +Q +LGH ++ TT Y VN N Sbjct: 276 HKFRRTLATRAIDKGMPIEQVQHLLGHVKIDTTMHYAMVNQAN 318 >gi|210611276|ref|ZP_03288831.1| hypothetical protein CLONEX_01021 [Clostridium nexile DSM 1787] gi|210152040|gb|EEA83047.1| hypothetical protein CLONEX_01021 [Clostridium nexile DSM 1787] Length = 327 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 59/249 (23%), Positives = 113/249 (45%), Gaps = 29/249 (11%) Query: 65 QLSYTEIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 Q++ ++R +++ +R++ K+ +++R LS SF +L+ +S + + +K Sbjct: 90 QVTTEDLRKYLTTYQTQRKSSKVTIDNIRRILS---SFFSWLEDEDFILKSPVRRIHKVK 146 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 + + ++ + DN R+ AI+ LL G+R+ E + L ++ Sbjct: 147 TAKLVKDTYTDEALELMRDNC----------TTTRDLAIIDLLASSGMRVGEMVMLNRED 196 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGK 236 I ++ + GKG+K R+V + + Y D P L +++ P R + G Sbjct: 197 IDFNERECVVIGKGNKERLVYFDARTKIHLQNYLNERTDTNPA-LFVSLNPPHDRLMIG- 254 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 GV R +R+L + L LP H R + AT + G + +Q +LGH ++ TT Sbjct: 255 ----GVETR-LRELGKRLNLP-KVHPHKFRRTLATSAIDKGMPIEQVQQLLGHQKIDTTM 308 Query: 297 IYTNVNSKN 305 Y V +N Sbjct: 309 HYAMVKQQN 317 >gi|158340931|ref|YP_001522098.1| phage integrase family protein [Acaryochloris marina MBIC11017] gi|158311172|gb|ABW32784.1| phage integrase family protein [Acaryochloris marina MBIC11017] Length = 205 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 71/159 (44%), Gaps = 15/159 (9%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL----LPSVRKA 209 R+ A+L L++ GLR+SEA+SL +M + + I + KG PL + S+R Sbjct: 53 RDKALLLLMFRHGLRVSEAISLRWDAVMLELKAIGITRLKGSVSGTHPLQADEVESLRDL 112 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 E Y P+ LF G RG L I + L + H LRHS Sbjct: 113 RAEGYPD-PY---------LFVGERGGHLKRHAVTSLINRCAELAQLGIKCHPHMLRHSC 162 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 HL + G D R IQ LGH + T YT +N K G+ Sbjct: 163 GYHLANQGLDTRLIQDWLGHRNIQHTVTYTMLNPKRFGE 201 >gi|89147638|gb|ABD62678.1| integrase [uncultured bacterium] Length = 163 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 4/66 (6%) Query: 238 LNPGVFQRYIRQ--LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 ++ Q+ +R LR + P T + RHSFATHLL G D+R++Q LGH + TT Sbjct: 99 IDESAMQKAMRAALLRSRISKP--ATCRSFRHSFATHLLERGADIRTVQEQLGHSDVRTT 156 Query: 296 QIYTNV 301 QIYT+V Sbjct: 157 QIYTHV 162 >gi|326331609|ref|ZP_08197898.1| putative integrase/recombinase XerD [Nocardioidaceae bacterium Broad-1] gi|325950597|gb|EGD42648.1| putative integrase/recombinase XerD [Nocardioidaceae bacterium Broad-1] Length = 334 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 92/217 (42%), Gaps = 20/217 (9%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN-SLPRALNEKQALTLVDNVLLHT 145 ++ R LS I F +Y + + S +++ K SN S ++ +A + H+ Sbjct: 98 TIARRLSAIAGFYRYGVAEDVLSASPAQHIKRPKTSNDSQTLGMDRGEARAFLAAAREHS 157 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLL 203 S R +A++ LL GLRISEAL ++ + L I KG R V L Sbjct: 158 S--------RAAALVMLLLHDGLRISEALGADVTDLSHSRGHRILTITRKGGARRDVVLN 209 Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST--T 261 P+ +A+ Y L+ + P+F G + R IR+L G+ + Sbjct: 210 PATSQALDAY-------LDARVDGPVFVTSTGNRWHRSEAFRLIRRLGASAGIEHGDKLS 262 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 H+LRH+F T G L +Q GH TT+ Y Sbjct: 263 PHSLRHTFVTLAREAGVPLEDVQDAAGHADPRTTRRY 299 >gi|303255271|ref|ZP_07341342.1| phage integrase family integrase/recombinase [Streptococcus pneumoniae BS455] gi|303260417|ref|ZP_07346386.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP-BS293] gi|303265063|ref|ZP_07350977.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae BS397] gi|302597740|gb|EFL64815.1| phage integrase family integrase/recombinase [Streptococcus pneumoniae BS455] gi|302638452|gb|EFL68918.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP-BS293] gi|302645423|gb|EFL75656.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae BS397] Length = 321 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 61/253 (24%), Positives = 113/253 (44%), Gaps = 29/253 (11%) Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRS----LKRSLSGIKSFLKYLKKRKITTESNILNM 116 +++ QL+ ++R++++ +++K ++ ++R LS SF +L++ + ++ I + Sbjct: 80 ESVTQLTTDDLRSYLANYQSEKDCSKANLDNIRRILS---SFFAWLEQEEYIIKNPIRRI 136 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 + +K ++ ++ + DN + R+ AI+ LL G+R+ E + L Sbjct: 137 KKIKTEQNVKETYTDEHLEIMRDNCE----------NLRDLAIIDLLASTGMRVGELVQL 186 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI-LEYYDLCPFDLNLNIQLPLFRGIRG 235 +I + + GKG K R P+ R I L Y + + LF + G Sbjct: 187 NRSDIDFENRECVVFGKGKKER--PVYFDARTKIHLRNY----LNDRKDSHPALFVTLVG 240 Query: 236 KPLNPGVFQRYIRQLRRYLGLPLS---TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 K G+ IR R LG LS H R + AT + G + +Q +LGH ++ Sbjct: 241 KVQRLGIAGVEIR--LRKLGDKLSIQKVHPHKFRRTLATKAIDKGMPIEQVQKLLGHSKI 298 Query: 293 STTQIYTNVNSKN 305 TT Y VN N Sbjct: 299 DTTLAYAMVNQNN 311 >gi|94442298|dbj|BAE93648.1| integron integrase [uncultured bacterium] Length = 162 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 3/98 (3%) Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 PS K+ + Y F N P ++ ++ Q+ I++ + +H Sbjct: 67 PSAAKSWMWQY---AFPSNQRCFAPDLGTMKRHHVHQTSVQKAIKRAVARCNINKRVGSH 123 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 RHSFAT LL NG D+R+IQ +LGH +STT IYT+V Sbjct: 124 AFRHSFATRLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161 >gi|312880385|ref|ZP_07740185.1| integrase family protein [Aminomonas paucivorans DSM 12260] gi|310783676|gb|EFQ24074.1| integrase family protein [Aminomonas paucivorans DSM 12260] Length = 309 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 71/158 (44%), Gaps = 3/158 (1%) Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVR 207 T ++ R+ A + L G R +EA L P+++ Q ++ + K R + S Sbjct: 126 TTYVGLRDKAAVLFLIDTGARPNEAWQLRPEDVDLVQGIALLRAETTKTRTPRTVFFSKP 185 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 A L L +P+F G P+ F +R + GL L T ++LRH Sbjct: 186 TAKLLNTLLGNRPDWWGPDVPIFAASTGSPMTSTEFGHRLRPVTARFGLNL--TVYSLRH 243 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 FAT+ L GG +Q ILGH ++ T Y N+N ++ Sbjct: 244 IFATNFLRGGGSALELQRILGHSNMTMTTRYANLNRED 281 >gi|229142394|ref|ZP_04270908.1| Phage integrase [Bacillus cereus BDRD-ST26] gi|228641059|gb|EEK97376.1| Phage integrase [Bacillus cereus BDRD-ST26] Length = 253 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 60/239 (25%), Positives = 100/239 (41%), Gaps = 34/239 (14%) Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTL 137 ++K +L+R + ++ FLKY+ ++ S+ L ++KK + R L ++ Sbjct: 9 SKKYAATTLRRKKTVVQQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLFPEEV--- 65 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGK 193 N +L T +T + ++ +LL GLRI E + ++ S LR+ GK Sbjct: 66 --NEILDTLKKTNFF---MYSLFFLLTTTGLRIEEVANAKWADLAFHPSLNVYLLRVVGK 120 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPF--------DLNLNIQLPLFRGIRGKPLNPGVFQR 245 G+K R V + V DLC +L+ + G + Sbjct: 121 GNKTREVRIFEDVLN------DLCRLRQLRKQTSELDASSSSAFLPKADGSHYRADYLSK 174 Query: 246 YIRQLRRYLGLPL------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 Y+ + LP T HT RH FA HL+ G +L+ I+ LGH + TT+ Y Sbjct: 175 YVAEKIEETNLPFLRYRKDRITPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERY 233 >gi|325965567|ref|YP_004243471.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans Sphe3] gi|323471654|gb|ADX75337.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans Sphe3] Length = 131 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 41/75 (54%) Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288 L+ RG ++ G F R +GLP H LRHS+ THL+ G D +Q+ +G Sbjct: 34 LWPSERGARMSLGSFGDAFAAARDAVGLPQELGLHCLRHSYVTHLIEAGYDAAFVQTQVG 93 Query: 289 HFRLSTTQIYTNVNS 303 H STT +YT+V+S Sbjct: 94 HSYASTTGLYTSVSS 108 >gi|295680709|ref|YP_003609283.1| integrase family protein [Burkholderia sp. CCGE1002] gi|295440604|gb|ADG19772.1| integrase family protein [Burkholderia sp. CCGE1002] Length = 568 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 74/328 (22%), Positives = 130/328 (39%), Gaps = 60/328 (18%) Query: 27 IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 +ERG LS LT + D + FL + + +R + + R F + Sbjct: 257 VERGRALSSLTTE----DAIAYRTFLRHPSPHARWVGPVRPRTSPDWRPF-----NGSLS 307 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 RS+ +LS + + ++L +++ + ++ + S + L+ A T + L+ Sbjct: 308 ARSVAHALSILGALFRWLIEQRYVLANPFAGVKVREASGA--NVLDTSHAFTEGEWALVR 365 Query: 145 TSHET-----KWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDD---QSTLRIQGK 193 T + W + +LL Y GLR SE + T +I D LR+ GK Sbjct: 366 TIADGLEWSYGWSAPAAHRLRFLLDFGYATGLRASELVGATLGHIETDARGDHWLRVTGK 425 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP------------- 240 G K+ V L P A+ Y +LP+ +R +P P Sbjct: 426 GRKLARVALPPLAWDALAHYL--------AERELPIA-PVRWRPETPVIGSLEADSESTI 476 Query: 241 ------GVFQRYIRQLRRYLGL---PLS-----TTAHTLRHSFATHLLSNGGDLRSIQSI 286 GV +R+ + + PL+ + H +RH+ ATH L G +L +++ Sbjct: 477 SSVRLWGVLRRFFLVAAKSIEADHPPLAEKLRCASPHWMRHTHATHALGRGAELTTVRDN 536 Query: 287 LGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 L H +STT IY + + M +++ Sbjct: 537 LRHASVSTTSIYLHSDEVKRARQMSDVF 564 >gi|271965097|ref|YP_003339293.1| phage integrase family protein [Streptosporangium roseum DSM 43021] gi|270508272|gb|ACZ86550.1| phage integrase family protein [Streptosporangium roseum DSM 43021] Length = 309 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 9/155 (5%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLP-SVRKA 209 AR+ AI LL+ G+RI+E ++L ++ ++ GKG+ R +PLL + R + Sbjct: 137 ARDRAIGRLLFYSGVRIAELVALDDNDVPLSARKGKVIVRSGKGETSREIPLLDGTARAS 196 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-----PLSTTAHT 264 + E+ L RG L+ + + +L + L+ +AH Sbjct: 197 VTEWRTERASWPGATDNPALLLNRRGGRLSTRAVDQLVDELAADADILDEAGALALSAHI 256 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 LRH+ AT+LL G D+ + +LGH RL TT+ YT Sbjct: 257 LRHTLATNLLRAGVDIVVVAELLGHARLDTTRRYT 291 >gi|29293005|gb|AAO73845.1|AF335469_2 FotT [Escherichia coli] Length = 191 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 83/178 (46%), Gaps = 4/178 (2%) Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 + +++ LT + L+ T + RN +LYL + G R+SE +L +++ +L Sbjct: 1 MTKRKYLTQSEVELMLTEAKHGQFSERNYCLLYLSFIHGFRVSEVCNLRLEDVCLRDKSL 60 Query: 189 RIQGKGDKIRIV-PLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRY 246 I+ + + PLL K + + LC D +N + LF +G L+ + Sbjct: 61 NIRRMKNGFSTIHPLLSDEVKVLKAW--LCVRDKMNGSESEWLFVSRQGGALSRQRVWQM 118 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 I+ L + G+ +++ H LRH+ L G D R IQ LGH + T YT N++ Sbjct: 119 IQNLGKKAGVKVNSHPHMLRHACGYALADRGVDTRLIQDYLGHRNIRHTVCYTASNAE 176 >gi|281426313|ref|ZP_06257226.1| integrase [Prevotella oris F0302] gi|281399555|gb|EFB30386.1| integrase [Prevotella oris F0302] Length = 406 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 79/318 (24%), Positives = 142/318 (44%), Gaps = 51/318 (16%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 + + I+R L L++Y+ L L Y ++K + I LS + ++FI Sbjct: 123 ERIGIDRALKTFKLRTYQ------LSLLREYVQKKHRVSDI-PLSQLD-KSFIEGFEYYL 174 Query: 83 IGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMR-----NLKKSNSLPRALNEKQALT 136 DR LKRS I S L L+ ++ + IL+ + ++ PR++ + + Sbjct: 175 TIDRKLKRS--SISSALSTLQIIVRMAVKKGILDFYPFFGYSYERPKGEPRSITQDELQR 232 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKG 194 ++D E +W + R L++ + C GL IS+ +L +NI+ ++ + I+G+ Sbjct: 233 IID-------LEIEWENYRIVRDLFI-FSCFSGLAISDVRNLREENIVLEEGEICIKGRR 284 Query: 195 DKIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL----NPGVFQRYI 247 K + V +LP AI+ Y RGIR + + + Sbjct: 285 MKTKTPYRVQVLPPAL-AIMNRY----------------RGIRAGFIFDVPTEDIIHNGM 327 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 ++R +G+ T H RH+FA+ + LS G + ++ +LGH L TTQIY V+S+ Sbjct: 328 HHIQRNIGMESPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLQTTQIYAAVSSERI 387 Query: 307 GDWMMEIYDQTHPSITQK 324 M ++ + + T K Sbjct: 388 HRDMQKVQQRIQDTFTLK 405 >gi|313105646|ref|ZP_07791910.1| putative bacteriophage integrase [Pseudomonas aeruginosa 39016] gi|310878412|gb|EFQ37006.1| putative bacteriophage integrase [Pseudomonas aeruginosa 39016] Length = 328 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 59/240 (24%), Positives = 98/240 (40%), Gaps = 39/240 (16%) Query: 67 SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSL 125 SY +R KR + I ++L L I++ LK +I ++ + ++ LK Sbjct: 104 SYASLR---RKRLEEGISGKTLNNELGYIRAVFNELKDLGQIDYDNPLAGVKLLKLQEGE 160 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 L +Q L+D++ + + + L G R SEA L Q + + Sbjct: 161 LSWLTTEQIGELLDSI------RNRCDNPHTELVTLLCLATGARWSEAEKLPAQRLQGNV 214 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245 T K K+R VP+ + + ++ P++ G F Sbjct: 215 VTY-AGTKSGKVRHVPIPAELADRVRAHW----------------------PMH-GPFTS 250 Query: 246 YIRQLRRYLG-----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 I RR L LP +H LRH+FA+H + NGG++ ++Q ILGH L+ T Y + Sbjct: 251 CITSFRRALERTTIQLPQGQASHALRHTFASHFMMNGGNILTLQKILGHSTLTMTMRYAH 310 >gi|299141756|ref|ZP_07034891.1| integrase [Prevotella oris C735] gi|298576607|gb|EFI48478.1| integrase [Prevotella oris C735] Length = 406 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 77/323 (23%), Positives = 140/323 (43%), Gaps = 61/323 (18%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLSYTEIRAFISKRRT 80 + + I+R L L++Y+ L L Y ++K + I QL T I F Sbjct: 123 ERIGIDRALKTFKLRTYQ------LSLLREYVQKKHKVSDIPLSQLDKTFIEGF----EY 172 Query: 81 QKIGDRSLKRS-----LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 DR LKRS LS +++ ++ K+ + L + ++ PR++ +++ Sbjct: 173 YLTIDRRLKRSSISSALSTLQTIVRMAVKKGVLDFYPFLGY-SYERPKGEPRSITQEELQ 231 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGK 193 ++D E +W + R L++ + C GL IS+ +L +NI+ ++ L I+G+ Sbjct: 232 RIIDL-------EIEWENYRIVRDLFV-FSCFSGLAISDVRNLREENIVLEEGELCIKGR 283 Query: 194 GDKIRI---VPLLPSVRKAILEY--------YDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242 K + V +LP I Y +D+ D+ LN Sbjct: 284 RMKTKTPYRVQVLPPAWAIIERYRGKRAGFVFDVPTTDIILN------------------ 325 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + ++R +G+ T H RH+FA+ + LS G + ++ +LGH L TTQ+Y V Sbjct: 326 ---GMHYIQRNIGMESPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAV 382 Query: 302 NSKNGGDWMMEIYDQTHPSITQK 324 +S+ M ++ + + T K Sbjct: 383 SSERIHRDMQKVQQRIQDTFTLK 405 >gi|224025008|ref|ZP_03643374.1| hypothetical protein BACCOPRO_01742 [Bacteroides coprophilus DSM 18228] gi|224018244|gb|EEF76242.1| hypothetical protein BACCOPRO_01742 [Bacteroides coprophilus DSM 18228] Length = 389 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 71/278 (25%), Positives = 113/278 (40%), Gaps = 36/278 (12%) Query: 44 RQFLIFLAFYTEEKITIQTIRQ---LSYTEIRAFISKRRTQKIGDRSLKRSLSGIK--SF 98 R L +L Y +E + I + + E + K ++ G R + + G+ S Sbjct: 120 RSCLRYLEIYCDENTLFRDITPDFIIGFKEFLENVEKDTHKRTGPRRERDTFQGLSQNSK 179 Query: 99 LKYLKKRKITT----ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + Y K + E I+++ L+ A +++ LTL + V S ++ Sbjct: 180 VSYFNKLRACINKAYEERIISINPLRGIEGFKAAEVKREYLTL-EEVKKLASTPCRYPVL 238 Query: 155 RNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212 + + L+ C GLR S+ LT I Q G+ RIV + LE Sbjct: 239 KRA----FLFSCLTGLRKSDIQKLTWSEI---------QKFGNFTRIV--FNQKKTGGLE 283 Query: 213 YYDLCP-----FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 Y D+ P + N + P+F G QR+ G+ + T H RH Sbjct: 284 YLDITPQAEKYLGEHKNPKEPVFSGFTYGAWTSLELQRWSMNA----GIQKNLTFHCGRH 339 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 +FA +L G D+ ++ +LGH LSTTQIY V KN Sbjct: 340 TFAVLMLDLGADIYTVSKLLGHRELSTTQIYAKVLDKN 377 >gi|307243971|ref|ZP_07526092.1| phage integrase, N-terminal SAM domain protein [Peptostreptococcus stomatis DSM 17678] gi|306492621|gb|EFM64653.1| phage integrase, N-terminal SAM domain protein [Peptostreptococcus stomatis DSM 17678] Length = 327 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 60/251 (23%), Positives = 112/251 (44%), Gaps = 29/251 (11%) Query: 63 IRQLSYTEIRAFISKRRTQKIGDR----SLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118 ++Q+ +IR ++++ + K R +++R LS SF +L+ +S + + Sbjct: 88 VKQIVTDDIRTYLTEYQNSKHSSRVTIDNIRRILS---SFFSWLEDEDYILKSPVRRIHK 144 Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178 +K S+ ++ +AL L+ + + R+ A++ + G+R+ E + L Sbjct: 145 VKTGTSVKETYSD-EALELMRD---------SCTELRDLAMIDMFASTGMRVGEMVLLNR 194 Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIR 234 ++I ++ + GKGDK RIV + + Y D P L +++Q P R Sbjct: 195 EDINFNERECVVFGKGDKERIVYFDARTKIHLQNYLQSRKDNNP-ALFVSLQSPHNR--- 250 Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 + G + +R L LGL + H R + AT + G + +Q +LGH R+ T Sbjct: 251 ---MKIGGIEVRLRNLGNRLGL-VKVHPHKFRRTLATVAIDKGMPIEQVQQLLGHRRIDT 306 Query: 295 TQIYTNVNSKN 305 T Y V N Sbjct: 307 TLQYAMVKQSN 317 >gi|302035678|ref|YP_003796000.1| phage integrase [Candidatus Nitrospira defluvii] gi|300603742|emb|CBK40074.1| Phage integrase [Candidatus Nitrospira defluvii] Length = 373 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 61/254 (24%), Positives = 113/254 (44%), Gaps = 24/254 (9%) Query: 49 FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT 108 F AF+ + +T+ +++ I + S+R + S+ R L+ ++ K+ Sbjct: 88 FRAFFGD-----RTLAEITPKLIVEYKSRRSATGVKPASINRELTCLRKAFSLAKREWEW 142 Query: 109 TESNILNMRNLKK-SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167 N ++ +L+K + R L E + L+D W+ +++ L+ G Sbjct: 143 CRDNPVSRVSLEKGATKRDRWLMEDEEARLLDAC-------PSWL---RELVVFALHS-G 191 Query: 168 LRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226 +R+ E LSLT + + ++ + K ++ R VPL +V + E + L Sbjct: 192 MRLGEILSLTWNGVDLFRRTATVFESKNEERRTVPLNQTVMALLTEKAKVRHIKTAL--- 248 Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286 +F + G L+P +R +R G+ ++ H LRH+FAT L+ G DL +Q + Sbjct: 249 --VFPSLAGTRLDPNHLRRALRPAMAKAGI-VNCHFHDLRHTFATRLVQAGVDLYKVQRL 305 Query: 287 LGHFRLSTTQIYTN 300 LGH TQ Y + Sbjct: 306 LGHKSPLMTQRYAH 319 >gi|291516261|emb|CBK69877.1| Site-specific recombinase XerD [Bifidobacterium longum subsp. longum F8] Length = 319 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 67/292 (22%), Positives = 125/292 (42%), Gaps = 37/292 (12%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK--- 77 +L E+E G S T+ YE + LA + +++ ++R ++++ Sbjct: 48 FLTAKEVE-GCSPKTIAYYESTLQHMTQALA---------KPCTRINSDDLREYLNRYEN 97 Query: 78 -RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 R K+ +++R +S SF +L+ +S + + +K + L+++ T Sbjct: 98 ERHAGKVTIDNIRRIMS---SFFAWLEDEDYIVKSPVRRIHRVKTAVMAKEVLSDENLET 154 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L D + R+ AI+ +L G+R+ E + L ++ + + GKG+K Sbjct: 155 LRD----------RCGTLRDLAIVDILASTGMRVGELVGLNIADVNLQERECLVTGKGNK 204 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKP--LNPGVFQRYIRQLRRY 253 R P+ R + L + + N P LF + G ++ G + +RQL + Sbjct: 205 QR--PVYFDARTKL----HLTAYLQSRNDSNPALFVALNGDGDRISIGGIESRLRQLGKD 258 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 G+ H R + ATH + G + +Q +LGH R+ TT Y VN N Sbjct: 259 AGIH-RVHPHKFRRTLATHAIDKGMPIEQVQKLLGHARIDTTMHYAMVNQNN 309 >gi|269126617|ref|YP_003299987.1| integrase family protein [Thermomonospora curvata DSM 43183] gi|268311575|gb|ACY97949.1| integrase family protein [Thermomonospora curvata DSM 43183] Length = 353 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 76/159 (47%), Gaps = 21/159 (13%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMD-----DQSTLRIQGKGDKIRIVPLLPSVRKA 209 R+ ++ LL G R+SE LT N+ D + RI GKG + R VPL +V + Sbjct: 180 RDGLVVLLLATVGPRVSE---LTGANVEDFFVNDGRWYWRIFGKGGRTRDVPLPEAVARV 236 Query: 210 ILEYYDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQL-------RRYLGLPLSTT 261 + Y + L+ ++ L RG+ L G Q I ++ RR + T Sbjct: 237 LQAYLERGRPLLDRGVEPKALLLSWRGRRLARGDVQAVIDRVLARVEPSRRR-----AVT 291 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 H LRH+ ATHLL+ D+ +++ +LGH L+T Y + Sbjct: 292 PHGLRHTTATHLLAAATDMDAVRRVLGHADLATLSRYRD 330 >gi|312887835|ref|ZP_07747422.1| integrase family protein [Mucilaginibacter paludis DSM 18603] gi|311299654|gb|EFQ76736.1| integrase family protein [Mucilaginibacter paludis DSM 18603] Length = 410 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 74/151 (49%), Gaps = 24/151 (15%) Query: 162 LLYGC--GLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRI-VPLLPSVRKAILEYYD 215 ++ C GL + ++LTP +I+ D + +R + I + VPLLP + +Y D Sbjct: 252 FVFCCYTGLSYVDMINLTPGHIIAGSDGERWIRTCREKTLIPVNVPLLPQALTILDKYKD 311 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGV----FQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 NI R + + P V Y++++ G+ + T H RH+FAT Sbjct: 312 --------NI-----RSLSNGRVFPTVSNQKVNSYLKEIADLCGITKNVTFHIARHTFAT 358 Query: 272 HL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + LSNG + ++ ILGH +++TTQIY V Sbjct: 359 TVTLSNGVPIETVSKILGHTKITTTQIYAKV 389 >gi|309777226|ref|ZP_07672189.1| site-specific recombinase, phage integrase family [Erysipelotrichaceae bacterium 3_1_53] gi|308915096|gb|EFP60873.1| site-specific recombinase, phage integrase family [Erysipelotrichaceae bacterium 3_1_53] Length = 350 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 2/133 (1%) Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 K + R VP+ + + Y P ++ N + +F RGKPL P + ++L + Sbjct: 218 KNKRQRFVPITKGLMDDLKTYIATMPEEMRNNPEQYVFINQRGKPLEPKRLLCHFKELLK 277 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGDWMM 311 GL H LRH+FAT L G D++ + +LGH + T +YT+V ++ + M Sbjct: 278 EAGLQ-DIKFHNLRHTFATRCLECGIDMKIVSKVLGHSTIQITADLYTHVTNRAMQNAMS 336 Query: 312 EIYDQTHPSITQK 324 ++ + + QK Sbjct: 337 KLIKENWNNAYQK 349 >gi|281178375|dbj|BAI54705.1| phage integrase [Escherichia coli SE15] Length = 314 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 85/178 (47%), Gaps = 15/178 (8%) Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 RAL ++ L+ H + R+ AI+ +L G GLR E + L ++ + Sbjct: 128 RALGRQEIRVLIQAAKQHPQSVRR---CRDVAIVLMLCGTGLRAGELVKLERRDYDNGIL 184 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GK----PLNP 240 T+R QGKG K R + + +V KAI + + + + LFR I+ GK PL Sbjct: 185 TVR-QGKGRKYREIHVADAVDKAIRAWLKVGADEADS----ALFRRIQRSGKVASQPLTT 239 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + +L++ G+ T H +R +F T LL G D+ +++ + GH +STT Y Sbjct: 240 TGLTGILAELQQTAGIA-RFTPHDMRRTFITRLLEQGVDINTVRQLAGHSDISTTTRY 296 >gi|228988910|ref|ZP_04148959.1| Integrase-recombinase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228770824|gb|EEM19340.1| Integrase-recombinase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 278 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 68/171 (39%), Gaps = 10/171 (5%) Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTL--RIQGKGDKIRIVPLLPSVRKAILEY 213 N I+ LL GLRI E + ++ + L R+ GKGDK R + P + + I EY Sbjct: 106 NYMIILLLVSTGLRIQEVANARMGDLFRAEGKLWLRVIGKGDKPREAYISPHLFECISEY 165 Query: 214 YDLCPFDLNLN--IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTL 265 LN PL + N + + +P TAHT Sbjct: 166 RSRKGLKTQLNRLDNSPLIVSNHLRKFNSTYLSNKVTSILSQARIPCVEQRENPITAHTF 225 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 RH FA N +L IQ LGH +TT+IY + K + + DQ Sbjct: 226 RHGFAIMAAENDVELLRIQQTLGHASANTTKIYLEKHMKRKHNAALSFADQ 276 >gi|307149750|ref|YP_003890793.1| integrase family protein [Cyanothece sp. PCC 7822] gi|306986550|gb|ADN18428.1| integrase family protein [Cyanothece sp. PCC 7822] Length = 192 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 70/164 (42%), Gaps = 27/164 (16%) Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL---RIQGK--------GDKIRI 199 W RN+ ++ +LY GLR +EA + ++ + T+ R++G GD++R Sbjct: 37 WYAYRNATLILMLYRHGLRRTEAAHIRWSDVDLAEGTIYIRRVKGSRSGRHPIGGDEMRA 96 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 + K + Y PF +F G R PL + Q G + Sbjct: 97 L-------KKLRRDYAPSPF---------VFTGNRRTPLTERTISHIVHQAGILAGFEFT 140 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 AH LRH+ +L + G D R IQ LGH + T YT ++S Sbjct: 141 VHAHLLRHACGYYLANKGVDTRIIQDYLGHANIQNTVRYTQLSS 184 >gi|300742464|ref|ZP_07072485.1| phage integrase family protein [Rothia dentocariosa M567] gi|300381649|gb|EFJ78211.1| phage integrase family protein [Rothia dentocariosa M567] Length = 225 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 89/217 (41%), Gaps = 36/217 (16%) Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 K +L I F +YL I+TE+ + +L S PR + +++ L T+ Sbjct: 23 KSALQSIHLFFRYL----ISTETREDDPTHLIPSIPQPRYHSRAIPSSVITQALRRTT-- 76 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP----LLP 204 ++ L GLR SE +L QN D + I GKG R +P LLP Sbjct: 77 ----SVEEEFMILLGAYAGLRRSEIAALHTQNYADKW--ISITGKGGHTRHIPAHALLLP 130 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 + YY F G R +++ R LG T H Sbjct: 131 YLESKSTGYYFAG-----------RFTGHRSA-------DNIAKKISRNLGQ--DYTPHQ 170 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 LRH FAT + + +LR++Q +LGH +STTQ Y V Sbjct: 171 LRHWFATTVYAESHNLRAVQELLGHADISTTQRYIGV 207 >gi|225378419|ref|ZP_03755640.1| hypothetical protein ROSEINA2194_04087 [Roseburia inulinivorans DSM 16841] gi|225209734|gb|EEG92088.1| hypothetical protein ROSEINA2194_04087 [Roseburia inulinivorans DSM 16841] Length = 328 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/232 (22%), Positives = 103/232 (44%), Gaps = 23/232 (9%) Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 ++++ K+ +++R S SF +L+ +S + + +K ++++ ++Q + Sbjct: 107 EKQSSKVTIDNIRRIFS---SFFAWLEDEDYIIKSPVRRIHRIKAASTIKETYTDEQLES 163 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 + DN + R+ A++ +L G+R+ E + L +I D+ + GKGDK Sbjct: 164 MRDNC----------DNPRDLALIDILASTGMRVGELVLLNRDDISFDERECIVFGKGDK 213 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP---GVFQRYIRQLRRY 253 R+V + + Y D L+ LF ++ P N G + +R++ + Sbjct: 214 ERMVYFDARTKIHLQNY-----LDSRLDGNEALFVSLKA-PYNRMKIGGIELRLREIGKK 267 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 L + H R + AT + G + +Q +LGH R+ TT Y V N Sbjct: 268 LNIE-KVHPHKFRRTLATVAIDKGMPIEQLQKLLGHQRIDTTLQYAMVKQSN 318 >gi|16766051|ref|NP_461666.1| phage tail-like protein [Enterobacteria phage Fels-2] gi|169936064|ref|YP_001718763.1| P2 Int-like protein [Enterobacteria phage Fels-2] gi|197250527|ref|YP_002147666.1| phage integrase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|200388896|ref|ZP_03215508.1| phage integrase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|16421285|gb|AAL21625.1| Fels-2 prophage protein [Enterobacteria phage Fels-2] gi|197214230|gb|ACH51627.1| phage integrase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|199605994|gb|EDZ04539.1| phage integrase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|312913759|dbj|BAJ37733.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223527|gb|EFX48592.1| Phage integrase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 341 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 34/156 (21%) Query: 153 DARNSAILYLLYGC---GLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSV 206 D+++ ++L + C G R SEA +L + S RI + KG K R VP+ Sbjct: 190 DSQSPSLLMIAKVCLATGARWSEAENLQGHQL----SKYRITYTKTKGKKNRTVPI---- 241 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG--VFQRYIRQLRRYLGLPLSTTAHT 264 + YD P + RGK P F+R ++ R + LP H Sbjct: 242 ---SQDLYDELPKN-------------RGKLFTPCRKAFERAVK--RAGIELPEGQCTHV 283 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 LRH+FA+H + NGG++ ++ ILGH + T +Y + Sbjct: 284 LRHTFASHFMMNGGNILVLRDILGHADIKMTMVYAH 319 >gi|331685896|ref|ZP_08386473.1| resolvase (Protein D) [Escherichia coli H299] gi|331076849|gb|EGI48070.1| resolvase (Protein D) [Escherichia coli H299] Length = 256 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 59/226 (26%), Positives = 97/226 (42%), Gaps = 52/226 (23%) Query: 121 KSNSLPRALNEKQALTLVDNVLLHT-------SHETKWI-----DARNSAILYLLYGCGL 168 +S LP A++ AL L ++H + E + D R +L L+ G Sbjct: 10 QSAQLPVAIDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVPDLRRKMLLATLWNTGA 69 Query: 169 RISEAL-------SLTPQNIMDDQSTL------------RIQGKGDKIRIVPLLPSVRKA 209 RI+EAL SLTP +TL R+ R+VPL S + Sbjct: 70 RINEALALTRGDFSLTPPYPFVQLATLKQRTEKAARTAGRMPAGQQTHRLVPLSDSWYVS 129 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG------------ 255 L+ + +++P+ R R G+ +++ R +R ++G Sbjct: 130 QLQ-------TMVATLKIPMERRNRRTGRTEKARIWEVTDRTVRTWIGEAVAAAAADGVT 182 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 183 FSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 228 >gi|330834471|ref|YP_004409199.1| phage integrase family protein [Metallosphaera cuprina Ar-4] gi|329566610|gb|AEB94715.1| phage integrase family protein [Metallosphaera cuprina Ar-4] Length = 284 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 74/291 (25%), Positives = 136/291 (46%), Gaps = 45/291 (15%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q ++Q+L++ G + T++ Y FL F+ E T I ++ +R SK Sbjct: 16 QYFIQSLKLS-GAGQGTIKLYYSAINDFLKFVNKNPNEVTTQDVINWINVLSVREGRSKT 74 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 +K +++ + ++ FL++L + + +R ++ RAL E + + Sbjct: 75 GDRKGRASTIRSYVIAVRRFLRWLG---VNVRPPVPRIRTPER-----RALRESE----I 122 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKI 197 +N++ R+ A++ LL GLR SE LS+T ++ + T+R+ + K + Sbjct: 123 ENIISSCKR------LRDRALISLLLDTGLRSSELLSITVGDLDLQERTIRVRETKNGEE 176 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ-------RYIRQL 250 RIV + R A L LN I+ + +G+ N VF+ + +++L Sbjct: 177 RIVFF--TARTASL---------LNQFIR----KTKKGE--NERVFEITYQALYKLVKRL 219 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + G+ H LRH+FAT+ + G L +Q +LGH + TTQIYT++ Sbjct: 220 GKKNGISW-LRPHILRHTFATNAIKKGAPLPVVQRLLGHKDIKTTQIYTHL 269 >gi|325955709|ref|YP_004293183.1| integrase/recombinase [Lactobacillus acidophilus 30SC] gi|325334689|gb|ADZ08242.1| integrase/recombinase [Lactobacillus acidophilus 30SC] Length = 284 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 62/275 (22%), Positives = 110/275 (40%), Gaps = 30/275 (10%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 +G ++ TL YE ++F F ++ + Q+ +++ F+ ++ + + ++ Sbjct: 20 QGRAEGTLLEYEMRLKEFAEFF------QLKALALDQVKKSDLTEFMEQKLSNCLKVSTI 73 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 + LS + F + + +E I P+ N K+ L D L H Sbjct: 74 RGKLSTFRVFCLWAVNKNYLSEVII-------SPQDYPKNTNVKRIRRLSDENLTIFKHY 126 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPS 205 + A YLL G G R++EA +L +++ ++ I K R +P++ + Sbjct: 127 IDTLQPNARAAFYLLIGSGCRVAEAANLKAEDVTLRGKSVYIDIRNAKWGSDRNIPIVDA 186 Query: 206 -VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 K + +Y D PLFR L+ Q Y + G+ H Sbjct: 187 DAAKIVWKYRTEVEVD-----NRPLFR------LSKRTLQNYATNFAKSTGINFY--CHL 233 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 LRH+FA L G L ++Q +LGH L T Y Sbjct: 234 LRHTFAGLLTEKGVPLTTVQYLLGHKSLGMTAHYA 268 >gi|260438910|ref|ZP_05792726.1| DNA integration/recombination/inversion protein [Butyrivibrio crossotus DSM 2876] gi|292808561|gb|EFF67766.1| DNA integration/recombination/inversion protein [Butyrivibrio crossotus DSM 2876] Length = 310 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 84/181 (46%), Gaps = 22/181 (12%) Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 P+ LN+ + L+++ LH + W + L+ G+R SEAL+LTP++ Sbjct: 116 PKFLNQFELHKLIED--LHLGPKVSW-----DWFILLVSKTGMRFSEALALTPKDFDFSH 168 Query: 186 STLRIQGKGDKIRIVPLLP-----SVRKAILEYYDLCPF---DLNLNIQLPLF--RGIRG 235 TL I D LP SVRK L++ + F +L P+F R I Sbjct: 169 QTLSISKTWDYKGKGGFLPTKNQSSVRKIQLDWQTVMQFAELTKSLPNDEPIFIKRSIVY 228 Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 G+ +R+ + G+P+ + H LRH+ A+ LL G + S+ LGH ++TT Sbjct: 229 NSTLNGILERHCKNA----GIPI-ISIHGLRHTHASLLLFAGVSIASVARRLGHASMTTT 283 Query: 296 Q 296 Q Sbjct: 284 Q 284 >gi|251779512|ref|ZP_04822432.1| phage integrase family protein, putative [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083827|gb|EES49717.1| phage integrase family protein, putative [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 292 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 71/286 (24%), Positives = 115/286 (40%), Gaps = 31/286 (10%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 +E G S T+QSY D FL +L E + +++ T + ++ + Sbjct: 13 MEDGKSINTIQSYVGDVSAFLKYLGTMNVEFDGV--LKRFYITSYKNYLIDNSYEP---A 67 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 ++ + ++ I +F +L + E N+ +LKK +E Q DN L Sbjct: 68 TINKKVNSIGAFNNFLIWKGYMQE----NVIDLKKDRVKIAVGSEHQVEVYSDNQLERLQ 123 Query: 147 ---HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL 203 K + R+ I+ LL G+R+SE + +NI S ++I GKG K+R VP Sbjct: 124 FYIQNQKKVSIRDKMIIQLLMFTGVRVSELCDIKLKNIDFLLSQIKIIGKGGKVREVPAK 183 Query: 204 PSVRKAILEY--------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 I EY Y F L G RG+ V + R Sbjct: 184 FEAMDTIEEYISERNNNPYKDSEF---------LILGQRGEIQRDAVNTLLEKHTVRG-N 233 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTN 300 + HT RH+F T L++ G + ++ + GH + TT + Y N Sbjct: 234 FEMKLKPHTFRHTFCTRLVAKGIPITTVSKLAGHSSIETTAKFYIN 279 >gi|331266258|ref|YP_004325888.1| integrase/recombinase, phage integrase family protein [Streptococcus oralis Uo5] gi|326682930|emb|CBZ00547.1| integrase/recombinase, phage integrase family protein [Streptococcus oralis Uo5] Length = 321 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 57/252 (22%), Positives = 115/252 (45%), Gaps = 27/252 (10%) Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRS----LKRSLSGIKSFLKYLKKRKITTESNILNM 116 +++ QL+ ++R++++ +++K ++ ++R LS SF +L++ + ++ I + Sbjct: 80 ESVTQLTTDDLRSYLANYQSEKDCSKANLDNIRRILS---SFFAWLEQEEYIIKNPIRRI 136 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 + +K ++ ++ + DN + R+ A++ LL G+R+ E + L Sbjct: 137 KKIKTEQTVKETYTDEHLEIMRDNCE----------NLRDLAMIDLLASTGMRVGELVQL 186 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI-LEYYDLCPFDLNLNIQLPLFRGIRG 235 +I + + GKG K R P+ R I L Y + + LF + G Sbjct: 187 NRSDIDFENRECVVFGKGKKER--PVYFDARTKIHLRNY----LNDRKDSHPALFVTLLG 240 Query: 236 KPLNPGV--FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 K G+ + +R+L + LG+ H R + AT + G + +Q +LGH ++ Sbjct: 241 KAQRLGIAGVEIRLRKLGQKLGIQ-KVHPHKFRRTLATKAIDKGMPIEQVQKLLGHSKID 299 Query: 294 TTQIYTNVNSKN 305 TT Y VN N Sbjct: 300 TTLAYAMVNQSN 311 >gi|319901057|ref|YP_004160785.1| integrase family protein [Bacteroides helcogenes P 36-108] gi|319416088|gb|ADV43199.1| integrase family protein [Bacteroides helcogenes P 36-108] Length = 392 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 46/163 (28%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 A L+ Y G+R S+ +SL P NI++ + + K K Sbjct: 237 AFLFCCYA-GMRYSDFISLMPNNIVEINKEIWLVYKSVKT-------------------- 275 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-------------------GLPL 258 N ++LPL+ GK ++ + ++Y ++ + G+ Sbjct: 276 ----NTEVRLPLYLLFGGKGID--ILRKYWDNIQAFFHIKDNSNANKDLIILARLAGISK 329 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + HT RH+ AT L+ NG ++ ++Q +LGH + TTQIYTNV Sbjct: 330 KISFHTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQIYTNV 372 >gi|314935704|ref|ZP_07843056.1| prophage L54a, integrase [Staphylococcus hominis subsp. hominis C80] gi|313656269|gb|EFS20009.1| prophage L54a, integrase [Staphylococcus hominis subsp. hominis C80] Length = 405 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 23/170 (13%) Query: 167 GLRISEALSLTPQNIMDDQSTLRIQG----------KGDK--------IRIVPLLPS--- 205 GLRI E L+L P+NI + I G +G K R + + Sbjct: 231 GLRIGELLALQPENIDFKNKKIEIDGTIAWITKDGVRGFKDTTKTEASYRTISITTRSCE 290 Query: 206 -VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 +RK +LE +D N + +F +G P+ I+ + +G+ + HT Sbjct: 291 ILRKVMLENKKSAKWDSNFKERNFIFTNSKGSPMPLSSINANIKNAAKNVGIEKDISTHT 350 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313 +RHS + L G LR+I +GH TT QIY++V + D M+++ Sbjct: 351 MRHSHISLLSQLGVSLRAIMDRVGHKDYKTTLQIYSHVTEQMDKDMMIKL 400 >gi|237801947|ref|ZP_04590408.1| hypothetical protein POR16_24188 [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024805|gb|EGI04861.1| hypothetical protein POR16_24188 [Pseudomonas syringae pv. oryzae str. 1_6] Length = 137 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 6/116 (5%) Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 L++ GKG K+R +PL P I +Y + L ++PLF +RGK G+ I Sbjct: 6 LKVHGKGGKVRYLPLHPIAAGRIHQYLENSEHHL-AERKVPLFMPLRGKLTGAGITANGI 64 Query: 248 RQL----RRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + + G+ + H LR + AT+ L + D+ +Q+ LGH +STT+IY Sbjct: 65 YAVVTAYAKKAGIEVDGLGVHGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 120 >gi|148984624|ref|ZP_01817892.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP3-BS71] gi|148997026|ref|ZP_01824680.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP11-BS70] gi|149007165|ref|ZP_01830829.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP18-BS74] gi|149010476|ref|ZP_01831847.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP19-BS75] gi|168484778|ref|ZP_02709723.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae CDC1873-00] gi|168575549|ref|ZP_02721485.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae MLV-016] gi|169832442|ref|YP_001694344.1| phage integrase family integrase/recombinase [Streptococcus pneumoniae Hungary19A-6] gi|194397446|ref|YP_002037527.1| phage integrase family integrase/recombinase [Streptococcus pneumoniae G54] gi|221231667|ref|YP_002510819.1| integrase/recombinase [Streptococcus pneumoniae ATCC 700669] gi|225854397|ref|YP_002735909.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae JJA] gi|225856554|ref|YP_002738065.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae P1031] gi|307067543|ref|YP_003876509.1| integrase [Streptococcus pneumoniae AP200] gi|147756726|gb|EDK63766.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP11-BS70] gi|147761203|gb|EDK68170.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP18-BS74] gi|147764957|gb|EDK71886.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP19-BS75] gi|147923015|gb|EDK74130.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP3-BS71] gi|168994944|gb|ACA35556.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae Hungary19A-6] gi|172042056|gb|EDT50102.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae CDC1873-00] gi|183578532|gb|EDT99060.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae MLV-016] gi|194357113|gb|ACF55561.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae G54] gi|220674127|emb|CAR68646.1| putative integrase/recombinase [Streptococcus pneumoniae ATCC 700669] gi|225723828|gb|ACO19681.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae JJA] gi|225725861|gb|ACO21713.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae P1031] gi|301799879|emb|CBW32455.1| putative integrase/recombinase [Streptococcus pneumoniae OXC141] gi|306409080|gb|ADM84507.1| Integrase [Streptococcus pneumoniae AP200] gi|332201355|gb|EGJ15425.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus pneumoniae GA47368] Length = 321 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/252 (23%), Positives = 114/252 (45%), Gaps = 27/252 (10%) Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRS----LKRSLSGIKSFLKYLKKRKITTESNILNM 116 +++ QL+ ++R++++ +++K ++ ++R LS SF +L++ + ++ I + Sbjct: 80 ESVTQLTTDDLRSYLANYQSEKDCSKANLDNIRRILS---SFFAWLEQEEYIIKNPIRRI 136 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 + +K ++ ++ + DN + R+ AI+ LL G+R+ E + L Sbjct: 137 KKIKTEQNVKETYTDEHLEIMRDNCE----------NLRDLAIIDLLASTGMRVGELVQL 186 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI-LEYYDLCPFDLNLNIQLPLFRGIRG 235 +I + + GKG K R P+ R I L Y + + LF + G Sbjct: 187 NRSDIDFENRECVVFGKGKKER--PVYFDARTKIHLRNY----LNDRKDSHPALFVTLVG 240 Query: 236 KPLNPGV--FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 K G+ + +R+L LG+ H R + AT + G + +Q +LGH ++ Sbjct: 241 KAQRLGIAGVEIRLRKLGDKLGIQ-KVHPHKFRRTLATKAIDKGMPIEQVQKLLGHSKID 299 Query: 294 TTQIYTNVNSKN 305 TT Y VN N Sbjct: 300 TTLAYAMVNQNN 311 >gi|134287548|ref|YP_001109714.1| phage integrase family protein [Burkholderia vietnamiensis G4] gi|134132198|gb|ABO59933.1| phage integrase family protein [Burkholderia vietnamiensis G4] Length = 701 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 53/203 (26%), Positives = 76/203 (37%), Gaps = 58/203 (28%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--------LRIQGKGDKIRIVPLLPS 205 AR +L Y GLR +E +I+ + LR+ GKG K R VPL+P+ Sbjct: 484 ARLRFVLAFAYSTGLRRAELCGAFTDDIVQRYAGAELGTIHLLRVVGKGAKERFVPLVPA 543 Query: 206 VRKAILEYYD---------LCPFDLNLNIQLPLFRGI----------------------- 233 V A+ +Y CP L L R I Sbjct: 544 VLDALGDYLVTRGFPRDPLACPLGTPLIPALLDNREIGRVRREAAASGADPDAAVAALTR 603 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPL---------------STTAHTLRHSFATHLLSNGG 278 R +P++P R R ++R+ + + H LRH+F +H L+NG Sbjct: 604 RDRPVHP---DRLYRAVKRFFATATEAAMREDSPHARAFSAASTHWLRHTFVSHALANGM 660 Query: 279 DLRSIQSILGHFRLSTTQIYTNV 301 L S ++ GH L TT IY Sbjct: 661 SLESARNFAGHDSLDTTSIYATA 683 >gi|332289031|ref|YP_004419883.1| site-specific tyrosine recombinase XerC [Gallibacterium anatis UMN179] gi|330431927|gb|AEC16986.1| site-specific tyrosine recombinase XerC [Gallibacterium anatis UMN179] Length = 310 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/185 (28%), Positives = 86/185 (46%), Gaps = 29/185 (15%) Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 P+ L++ + TL+ + L+ W+ + L+ GLR SEAL++TP++ + Sbjct: 113 PKYLSQYELQTLIHQLNLNEKLSFDWL-------ILLIAKTGLRFSEALAVTPKDFDFAR 165 Query: 186 STLRIQGKGDKIRIVPLLP-----SVRKAILEYYDL---------CPFDLNLNIQLPLFR 231 TL I D LP S+RK L++ + CP N+ I LP + Sbjct: 166 QTLTINKTWDYKNEGGFLPTKNRSSIRKVQLDWQTIIQFAQLIRHCP--ENIPIFLPNYE 223 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291 + +N + RY ++ +P+ T H LRH+ A+ LL G + S+ LGH Sbjct: 224 KVYNSTIN-DLIARYCKKA----AIPI-ITVHGLRHTHASLLLFAGVSIASVARRLGHAS 277 Query: 292 LSTTQ 296 ++TTQ Sbjct: 278 ITTTQ 282 >gi|322614413|gb|EFY11344.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621522|gb|EFY18375.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624383|gb|EFY21216.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626580|gb|EFY23385.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633558|gb|EFY30300.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638399|gb|EFY35097.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322647302|gb|EFY43798.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649302|gb|EFY45739.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655977|gb|EFY52277.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661373|gb|EFY57598.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662570|gb|EFY58778.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666944|gb|EFY63119.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671314|gb|EFY67437.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677679|gb|EFY73742.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681494|gb|EFY77524.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322683894|gb|EFY79904.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195464|gb|EFZ80642.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197494|gb|EFZ82631.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203015|gb|EFZ88047.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205255|gb|EFZ90230.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210594|gb|EFZ95478.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218124|gb|EGA02836.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221609|gb|EGA06022.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227630|gb|EGA11785.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230888|gb|EGA15006.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234760|gb|EGA18846.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238800|gb|EGA22850.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241499|gb|EGA25530.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248355|gb|EGA32291.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252880|gb|EGA36714.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256999|gb|EGA40708.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260527|gb|EGA44138.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264415|gb|EGA47921.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269549|gb|EGA53002.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 339 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 24/153 (15%) Query: 153 DARNSAILYLLYGC---GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 D+++ ++L + C G R SEA +L + + T + KG K R VP+ Sbjct: 190 DSQSPSLLMIAKVCLATGARWSEAENLQGHQLSKYRITY-TKTKGKKNRTVPI------- 241 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 +L +LP RG P F+R ++ R + LP H LRH+F Sbjct: 242 ----------SQDLYAELPKNRGKLFTPCRK-AFERAVK--RAGIELPEGQCTHVLRHTF 288 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 A+H + NGG++ ++ ILGH + T +Y++ + Sbjct: 289 ASHFMMNGGNILVLRDILGHSDIKMTMVYSHFS 321 >gi|261210225|ref|ZP_05924522.1| integrase [Vibrio sp. RC341] gi|260840765|gb|EEX67314.1| integrase [Vibrio sp. RC341] Length = 317 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/239 (24%), Positives = 108/239 (45%), Gaps = 35/239 (14%) Query: 69 TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPR 127 +E+ A +RRT ++ ++ R S +++ L + + T N L +R +++ R Sbjct: 90 SEMFAKYRERRTLEVSLTTVNREHSYLRAVFNELDRLGVITYENPLTKIRQFREAEGELR 149 Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC---GLRISEALSLTPQNIMDD 184 L+ + L++ + T N ++++++ C G R EA +L P I + Sbjct: 150 FLSHDEIARLLEQCKVST----------NKSLIHVVKICLATGARWGEAENLKPSQIANG 199 Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAIL--EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242 + T + K K R VP+ IL E +L PF +F G + Sbjct: 200 KVTF-LNTKSKKNRTVPI-----NQILFNELEELEPFS-----NSRMFVG------SLAA 242 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 F+ + R + LP H LRH+FA+H + GG++ ++ +LGH ++TT Y ++ Sbjct: 243 FRTALS--RADIELPAGQNTHVLRHTFASHYVMGGGNIVKLRDVLGHKEITTTMRYAHL 299 >gi|291457408|ref|ZP_06596798.1| integrase/recombinase, phage integrase family [Bifidobacterium breve DSM 20213] gi|322691668|ref|YP_004221238.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217] gi|291381243|gb|EFE88761.1| integrase/recombinase, phage integrase family [Bifidobacterium breve DSM 20213] gi|320456524|dbj|BAJ67146.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217] Length = 319 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 67/292 (22%), Positives = 125/292 (42%), Gaps = 37/292 (12%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK--- 77 +L E+E G S T+ YE + LA + +++ ++R ++++ Sbjct: 48 FLTAKEVE-GCSPKTIAYYESTLQHMTQALA---------KPCTRINSDDLREYLNRYEN 97 Query: 78 -RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 R K+ +++R +S SF +L+ +S + + +K + L+++ T Sbjct: 98 ERHAGKVTIDNIRRIMS---SFFAWLEDEDYIVKSPVRRIHRVKTAVMAKEVLSDENLET 154 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L D + R+ AI+ +L G+R+ E + L ++ + + GKG+K Sbjct: 155 LRD----------RCGTLRDLAIVDILASTGMRVGELVGLNIADVNLQERECLVTGKGNK 204 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKP--LNPGVFQRYIRQLRRY 253 R P+ R + L + + N P LF + G ++ G + +RQL + Sbjct: 205 QR--PVYFDARTKL----HLTAYLQSRNDSNPALFVALNGDGDRISIGGIESRLRQLGKD 258 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 G+ H R + ATH + G + +Q +LGH R+ TT Y VN N Sbjct: 259 AGIH-RVHPHKFRRTLATHAIDKGMPIEQVQKLLGHARIDTTMHYVMVNQNN 309 >gi|237740506|ref|ZP_04570987.1| integrase/recombinase [Fusobacterium sp. 2_1_31] gi|229422523|gb|EEO37570.1| integrase/recombinase [Fusobacterium sp. 2_1_31] Length = 328 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 73/295 (24%), Positives = 129/295 (43%), Gaps = 40/295 (13%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTI----RQLSYTEIRAFISKRRTQKIGDRS 87 S+ T++ Y + FL F+ + E +I + + + ++ A+I DR Sbjct: 33 SEKTVKDYMFHLKDFLHFV-YEGENDFSISEVIPLMQDIEKEDVEAYI----VHLFEDRK 87 Query: 88 LKRS-----LSGIKSFLKYLKKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLV 138 LK++ LS +KS K L+ + + + RN++ N L ++++ + + Sbjct: 88 LKKTSVNTILSALKSLYKELESNGLKNPVKYIKLFKVNRNIE--NVLKVSIDDIRKII-- 143 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLR-IQGKGD 195 L E K+ RN ILY L+ G+R E L+L ++ + +D+ + +Q K Sbjct: 144 --GLYKIDSEKKY---RNITILYTLFYTGMRSKELLTLQFKHFLRREDEYFFKLVQTKSG 198 Query: 196 KIRIVPLLPSVRKAILEY-------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 K P+ S+ K + EY Y L DL+ + PL+ I+ Sbjct: 199 KDVYKPIHKSLVKKLEEYRSYLMNMYSLDSKDLDEHYIFATSVS-NNSPLSYRSLNVIIQ 257 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + + + +S H +RH+ AT L NG D+ I+ LGH T++Y NV S Sbjct: 258 DMGKLIEKDIS--PHNIRHAIATELSLNGADILEIRDFLGHSDTKVTEVYINVRS 310 >gi|16763108|ref|NP_458725.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144590|ref|NP_807932.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56414704|ref|YP_151779.1| phage integrase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363631|ref|YP_002143268.1| phage integrase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|213426678|ref|ZP_03359428.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213586423|ref|ZP_03368249.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213855469|ref|ZP_03383709.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|25301805|pir||AI1039 phage integrase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505416|emb|CAD06766.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi] gi|29140228|gb|AAO71792.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56128961|gb|AAV78467.1| phage integrase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095108|emb|CAR60654.1| phage integrase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 341 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 71/153 (46%), Gaps = 28/153 (18%) Query: 153 DARNSAILYLLYGC---GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 D+++ ++L + C G R SEA +L + + T + KG K R VP+ Sbjct: 190 DSQSPSLLMIAKICLATGARWSEAENLQGHQLSKYRITY-TKTKGKKNRTVPI------- 241 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG--VFQRYIRQLRRYLGLPLSTTAHTLRH 267 E YD P + RGK P F+R ++ R + LP H LRH Sbjct: 242 SQELYDELPKN-------------RGKLFTPCRKSFERAVK--RAGIELPEGQCTHVLRH 286 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 +FA+H + NGG++ ++ ILGH + T +Y + Sbjct: 287 TFASHFMMNGGNILVLRDILGHADIKMTMVYAH 319 >gi|257463634|ref|ZP_05628025.1| site-specific recombinase XerD [Fusobacterium sp. D12] gi|317061186|ref|ZP_07925671.1| DNA integration/recombination/inversion protein [Fusobacterium sp. D12] gi|313686862|gb|EFS23697.1| DNA integration/recombination/inversion protein [Fusobacterium sp. D12] Length = 207 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 80/164 (48%), Gaps = 18/164 (10%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 +Q ++ +LE++RGL + +L++ + D QFL ++ E + T+ I+ ++ Sbjct: 8 KQKYIHHLELQRGLRQNSLRAIQKDLEQFLHYIEDCQEGEFTVLAIKSYFFS-------- 59 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 +K + ++ R LS IK FL++LK+ I E L + ++K E+ + Sbjct: 60 -LQEKHAESTVHRKLSSIKVFLRFLKEENIVEEDFSLYLIKVRK---------EEDVILF 109 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 + + ++ D R+ AI LLY G++ E LSL+ I Sbjct: 110 FETSVWEKFRKSFEEDIRDRAIFELLYSTGMKPKEFLSLSYMQI 153 >gi|194429446|ref|ZP_03061969.1| integrase [Escherichia coli B171] gi|194432824|ref|ZP_03065108.1| integrase [Shigella dysenteriae 1012] gi|194412507|gb|EDX28806.1| integrase [Escherichia coli B171] gi|194418812|gb|EDX34897.1| integrase [Shigella dysenteriae 1012] gi|195183060|dbj|BAG66620.1| putative integrase [Escherichia coli O111:H-] gi|332090165|gb|EGI95264.1| integrase [Shigella dysenteriae 155-74] Length = 334 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 22/143 (15%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 + L G R SEA L + I+ ++ T ++ K + R VP+ +V +AI Sbjct: 185 VALLCLSTGARWSEACKLRGEQIVHNRVTF-LETKNGRKRTVPISQAVCEAIKTRETGGL 243 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-GLPLSTTAHTLRHSFATHLLSNG 277 F++ ++ + L+R LP AH LRH+FA+H + NG Sbjct: 244 FEVK--------------------YREFCLALKRVKPDLPKGQAAHVLRHTFASHFVMNG 283 Query: 278 GDLRSIQSILGHFRLSTTQIYTN 300 G++ ++Q ILGH + T Y + Sbjct: 284 GNIIALQKILGHATIQQTMAYAH 306 >gi|300824703|ref|ZP_07104809.1| site-specific recombinase, phage integrase family [Escherichia coli MS 119-7] gi|300522793|gb|EFK43862.1| site-specific recombinase, phage integrase family [Escherichia coli MS 119-7] Length = 268 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 59/226 (26%), Positives = 97/226 (42%), Gaps = 52/226 (23%) Query: 121 KSNSLPRALNEKQALTLVDNVLLHT-------SHETKWI-----DARNSAILYLLYGCGL 168 +S LP A++ AL L ++H + E + D R +L L+ G Sbjct: 22 QSAQLPVAIDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVPDLRRKMLLATLWNTGA 81 Query: 169 RISEAL-------SLTPQNIMDDQSTL------------RIQGKGDKIRIVPLLPSVRKA 209 RI+EAL SLTP +TL R+ R+VPL S + Sbjct: 82 RINEALALTRGDFSLTPPYPFVQLATLKQRTEKAARTAGRMPAGQQTHRLVPLSDSWYVS 141 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG------------ 255 L+ + +++P+ R R G+ +++ R +R ++G Sbjct: 142 QLQ-------TMVATLKIPMERRNRRTGRTEKARIWEVTDRTVRTWIGEAVAAAAADGVT 194 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 195 FSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240 >gi|218263862|ref|ZP_03477831.1| hypothetical protein PRABACTJOHN_03521 [Parabacteroides johnsonii DSM 18315] gi|218222461|gb|EEC95111.1| hypothetical protein PRABACTJOHN_03521 [Parabacteroides johnsonii DSM 18315] Length = 386 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 69/282 (24%), Positives = 118/282 (41%), Gaps = 44/282 (15%) Query: 44 RQFLIFLAFYTEEKITIQTIRQ---LSYTEIRAFISKRRTQKIGDRSLKRSLSGIK--SF 98 R L +L Y +EK T + + + + E + K +++G R + + G+ S Sbjct: 117 RSCLRYLEIYCDEKTTFRDVTPEFVMGFKEFLEHVEKDTHKRVGPRRERDTFQGLSQNSK 176 Query: 99 LKYLKKRKITT----ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + Y K + + ++ + L+ A ++ LTL D V + ++ Sbjct: 177 VSYFNKLRACINQAYDERVIPINPLRGIEGFKAAEVKRDYLTL-DEVRQLAATPCRYPIL 235 Query: 155 RNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212 + + L+ C G+R S+ LT + Q G+ RIV + E Sbjct: 236 KRA----FLFSCLTGIRKSDIQKLTWGEV---------QKFGEYTRIV--FKQKKTGGQE 280 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR------QLRRY---LGLPLSTTAH 263 Y D+ P Q + G RG P + VF + +L+R+ G+ + T H Sbjct: 281 YLDITP-------QAEKYLGERGNP-DDLVFTGFTYGAWTSLELQRWSLAAGMNKNLTFH 332 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 RH+FA +L G D+ ++ +LGH L+TTQIY V KN Sbjct: 333 CGRHTFAILMLDLGADIYTVSKLLGHKELATTQIYAKVLDKN 374 >gi|226329968|ref|ZP_03805486.1| hypothetical protein PROPEN_03881 [Proteus penneri ATCC 35198] gi|225200763|gb|EEG83117.1| hypothetical protein PROPEN_03881 [Proteus penneri ATCC 35198] Length = 168 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 19/149 (12%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211 ++ N + L G R EAL L ++++ ++ K +K RIVP+ +V I Sbjct: 16 LEGDNLKVAVLCLSTGARWGEALKLKREHVIQNKVRFTYT-KTNKPRIVPISQAVADMIC 74 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 G+ + +F+R I++++ + L +T H LRH+FAT Sbjct: 75 TKKS----------------GLLFTETSYHMFRRAIKKVKPSMALGQAT--HALRHTFAT 116 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 H + NGG + ++Q ILGH L T Y + Sbjct: 117 HFMMNGGSIITLQRILGHTNLQQTLTYAH 145 >gi|189460548|ref|ZP_03009333.1| hypothetical protein BACCOP_01189 [Bacteroides coprocola DSM 17136] gi|189432792|gb|EDV01777.1| hypothetical protein BACCOP_01189 [Bacteroides coprocola DSM 17136] Length = 388 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/217 (26%), Positives = 97/217 (44%), Gaps = 35/217 (16%) Query: 110 ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--G 167 E I+ L+ +A E+ LTL + V + + K+ +N+ ++ C G Sbjct: 187 EDRIIPHNPLRGIEGFKQAETERSYLTL-EEVKAMAAAQCKYPALKNA----FMFSCLTG 241 Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227 LR S+ L + + Q +GD RI+ + EY L++N Q Sbjct: 242 LRKSDIEKLRWREV---------QQQGDFTRII--FKQKKTGGQEY-------LDINKQA 283 Query: 228 PLFRGIRGKPLNPGVFQRY------IRQLRRYL---GLPLSTTAHTLRHSFATHLLSNGG 278 + G+R +P + VF + I +LR + G+ T H+ RH+FA +L G Sbjct: 284 VQYMGVRREP-DDRVFVGFKYSAYMIAELRMWANRAGITKDITFHSGRHTFAVLMLDLGA 342 Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 ++ ++Q +LGH LSTTQIY + K + + I D Sbjct: 343 EIYTVQKLLGHKELSTTQIYAKILDKKKQEAVAMIPD 379 >gi|295090947|emb|CBK77054.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum K10] Length = 327 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 59/253 (23%), Positives = 116/253 (45%), Gaps = 29/253 (11%) Query: 61 QTIRQLSYTEIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116 +T +Q++ ++R +++ +R + K+ +++R LS SF +L+ +S + + Sbjct: 86 KTAQQITTEDLRTYLTNYQIQRGSSKVTIDNIRRILS---SFFSWLEDEDFILKSPVRRI 142 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 +K + + ++ + DN +AR+ AI+ LL G+R+ E + L Sbjct: 143 HKVKTAKVVKDTYTDEALELMRDNC----------TNARDLAIIDLLASSGMRVGEMVML 192 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRG 232 +I ++ + GKG+K R+V + + Y D P L ++++ P R Sbjct: 193 NRDDIDFNERECVVIGKGNKERLVYFDARTKIHLQNYLNERTDANPA-LFVSLKAPNERL 251 Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 + G GV R +R++ + L L H R + AT + G + +Q +LGH ++ Sbjct: 252 MIG-----GVETR-LREMGKRLNLQ-KVHPHKFRRTLATSAIDKGMPIEQVQQLLGHQKI 304 Query: 293 STTQIYTNVNSKN 305 TT Y V +N Sbjct: 305 DTTMHYAMVKQQN 317 >gi|238760428|ref|ZP_04621566.1| Int [Yersinia aldovae ATCC 35236] gi|238701323|gb|EEP93902.1| Int [Yersinia aldovae ATCC 35236] Length = 284 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/242 (22%), Positives = 102/242 (42%), Gaps = 30/242 (12%) Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 + + QL+ E+ S+R I ++ R L + L K I Sbjct: 54 KVVSQLTKRELMEHRSQRLADGISAATINRDLYRLSGMFSALIK--------IEEFSGQN 105 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 + LP + +T +D ++ D R A+L L G R E +LT Sbjct: 106 PQHGLPPLAEKNPGMTFLDTEEINRLLAVLSGDERLIALLCL--STGGRWGEVSTLTAAQ 163 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240 +++++ T ++ K K R +P+ +++ ++ N LF+ ++ Sbjct: 164 VVNNRVTF-LETKNGKKRTIPISAELQE-----------EVKTNASGKLFK------VDY 205 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 G F +R ++ LP H LRH+FA+H + NGG++ ++Q ILGH + T Y + Sbjct: 206 GKFCETLRMVKP--DLPRGQATHVLRHTFASHFMMNGGNIIALQQILGHANIQQTMAYAH 263 Query: 301 VN 302 ++ Sbjct: 264 LS 265 >gi|37955774|gb|AAP22612.1| IntI1 [Pseudomonas aeruginosa] Length = 319 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 74/167 (44%), Gaps = 37/167 (22%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207 LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198 Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 +A + F + + P +R + FQ Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291 R ++ G+ T HTLRHSFAT LL +G D+R++Q +L FR Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLVVFR 305 >gi|288926827|ref|ZP_06420735.1| integrase [Prevotella buccae D17] gi|288336399|gb|EFC74777.1| integrase [Prevotella buccae D17] Length = 407 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 14/147 (9%) Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 ++ C GL + +LTP+++ MDD+ + + + + LL + K I+ Y Sbjct: 249 FIFSCFTGLSYIDVANLTPEHLVNMDDKQWIMTKRQKTNVESNILLLDIPKQIIAKYSNK 308 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 + LF + + +N Y++++ G+ + T H RH+FAT LS G Sbjct: 309 TYR-----DSKLFPVLSNQKMNA-----YLKEIADICGIGKNLTFHMARHTFATMSLSKG 358 Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSK 304 + S+ +LGH L TTQIY + +K Sbjct: 359 VPMESVSKMLGHTNLKTTQIYARITNK 385 >gi|255021753|ref|ZP_05293790.1| Site-specific recombinase XerD [Acidithiobacillus caldus ATCC 51756] gi|254968809|gb|EET26334.1| Site-specific recombinase XerD [Acidithiobacillus caldus ATCC 51756] Length = 307 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 78/159 (49%), Gaps = 10/159 (6%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212 R L+LL GLR+SEALSL+ + D +R+ GKG+K R VP+ P++ + +LE Sbjct: 149 RKRVFLHLLLFTGLRVSEALSLSLAQVRLEADPPVVRVIGKGNKEREVPISPTL-QVVLE 207 Query: 213 YY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSF 269 Y F N + LF G P + ++ R G+ + H LRH+F Sbjct: 208 GYLERRQRFVRNGDW---LFSTAVGAPFTRTWAYTTVSEVIRGAGIQKPAYGPHVLRHTF 264 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGG 307 AT L G +++ LGH L+ T ++Y +V + G Sbjct: 265 ATRQLRAGIAPAIVKAWLGHEDLAITFRVYEHVFAAPAG 303 >gi|327399861|ref|YP_004346892.1| site-specific recombinase, phage integrase family protein [Lactobacillus amylovorus GRL 1112] gi|327399877|ref|YP_004346908.1| site-specific recombinase, phage integrase family protein [Lactobacillus amylovorus GRL 1112] gi|327182531|gb|AEA32966.1| site-specific recombinase, phage integrase family protein [Lactobacillus amylovorus GRL 1112] gi|327182547|gb|AEA32982.1| site-specific recombinase, phage integrase family protein [Lactobacillus amylovorus GRL 1112] Length = 284 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 62/275 (22%), Positives = 111/275 (40%), Gaps = 30/275 (10%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 +G ++ TL YE ++F F ++ + Q+ +++ F+ ++ + + ++ Sbjct: 20 QGRAEGTLLEYEMRLKEFAEFF------QLKALALDQVKKSDLTEFMEQKLSNCLKVSTI 73 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 + LS + F + + +E I P+ N K+ L D L H Sbjct: 74 RGKLSTFRVFCLWAVNKNYLSEVII-------SPQDYPKNTNVKRIRRLSDENLTIFKHY 126 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPS 205 + A YLL G G R++EA +L +++ +++ I K R +P++ + Sbjct: 127 IDTLQPNARAAFYLLIGSGCRVAEAANLRAEDVTLRGNSVYIDIRNAKWGSDRNIPIVDA 186 Query: 206 -VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 K + +Y D PLFR L+ Q Y + G+ H Sbjct: 187 DAAKIVWKYRTEVEVD-----NRPLFR------LSKRTLQNYATNFAKSTGINFY--CHL 233 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 LRH+FA L G L ++Q +LGH L T Y Sbjct: 234 LRHTFAGLLTEKGVPLTTVQYLLGHKSLGMTAHYA 268 >gi|294505690|ref|YP_003569751.1| Tyrosine recombinase xerD [Salinibacter ruber M8] gi|294342129|emb|CBH22793.1| Tyrosine recombinase xerD [Salinibacter ruber M8] Length = 191 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 89/201 (44%), Gaps = 40/201 (19%) Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178 + + + LP+ L E + + LL ++ + R+ + + GLR SEA +L P Sbjct: 1 MARPDKLPKILTEAET-----DRLLAQPNQRYFGPHRDYLYMRAMLKAGLRASEATALRP 55 Query: 179 QNI--MDDQSTLRIQGKGDKIRIV----PLLPSV------RKAILEYYD-LCPFDLNLNI 225 ++I M + +R +GKG K R + LL + RKA D L P + + Sbjct: 56 EHIDLMSGKLMVR-EGKGAKDRTLWIGEELLEELQAWMDRRKATAPGADYLLPTSKSTQV 114 Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYL-GLPLS----TTAHTLRHSFATHLLSNGGDL 280 R R ++RY G + + HTLRH+FAT L G + Sbjct: 115 ATSHLR----------------RSVKRYAEGANIEEVGRVSPHTLRHTFATRLYQETGKI 158 Query: 281 RSIQSILGHFRLSTTQIYTNV 301 R +Q LGH LSTT IYT+V Sbjct: 159 RLVQKALGHSDLSTTMIYTHV 179 >gi|256838718|ref|ZP_05544228.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13] gi|256739637|gb|EEU52961.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13] Length = 406 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/170 (24%), Positives = 81/170 (47%), Gaps = 17/170 (10%) Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI 199 ++L K ++ ++ ++ GL S+ L+P++++ D++ L I+ K +I Sbjct: 232 IILAKEFTIKRVEQVRDVFVFCIFT-GLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKI 290 Query: 200 ---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +P+LP + +Y D+ L LP+ R Y++++ G+ Sbjct: 291 MCNIPVLPVAASILDKYKDVAECTGKL---LPVLSNQR--------MNSYLKEIADVCGI 339 Query: 257 PLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + + HT RHS+AT + L+NG + ++ +LGH S T+ Y V +N Sbjct: 340 HKNLSTHTARHSYATSICLANGVSMENVAKMLGHADTSVTKHYARVLDQN 389 >gi|304382759|ref|ZP_07365243.1| integrase [Prevotella marshii DSM 16973] gi|304336078|gb|EFM02324.1| integrase [Prevotella marshii DSM 16973] Length = 406 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 80/319 (25%), Positives = 138/319 (43%), Gaps = 53/319 (16%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLSYTEIRAFISKRRT 80 + + I+R L L L++Y+ L L Y ++K + I QL T I F Sbjct: 123 ERIGIDRALKTLKLRTYQ------LSLLCEYVQKKYKVSDIPLSQLDNTFIEGF----EY 172 Query: 81 QKIGDRSLKRSLSGI-----KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 DR LKRS ++ ++ K+ + L + ++ PR++ + + Sbjct: 173 YLTIDRQLKRSSISSTLSTLQTIVRMAVKKGVLDFYPFLGY-SYERPKGEPRSITQDELQ 231 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGK 193 ++D E +W + R L++ + C GL IS+ +L +NI+ ++ L I+G+ Sbjct: 232 KIID-------LEIEWENYRIVRDLFV-FSCFSGLAISDVRNLREENIVLEEGELCIKGR 283 Query: 194 GDKIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL----NPGVFQRY 246 K + V +LP AI+E Y RG R + V Sbjct: 284 RMKTKTPYRVQVLPPAW-AIMERY----------------RGKRAGFVFDVPTTDVILNG 326 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 I ++R +G+ T H RH+FA+ + LS G + ++ +LGH L TTQIY V+S+ Sbjct: 327 IHHIQRNIGMETPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAAVSSER 386 Query: 306 GGDWMMEIYDQTHPSITQK 324 M ++ + + T K Sbjct: 387 IHRDMQKVQQRIQDTFTLK 405 >gi|30908746|gb|AAP37605.1| IntI [uncultured bacterium] Length = 161 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 37/57 (64%) Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 R ++Q + + HTLRHS ATHLL +G D+R++Q +LGH + TT IYT+V Sbjct: 105 RGVKQAAHAARIDKHVSCHTLRHSSATHLLEDGYDIRTVQELLGHSSVETTMIYTHV 161 >gi|295841276|dbj|BAJ07044.1| integrase [uncultured bacterium] Length = 393 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 11/133 (8%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSVRKA 209 + R + L+YG G+R+ E + L Q++ D Q T+R+ GKG K R+VPL + A Sbjct: 262 MSGRQRLMASLMYGTGMRLMECVRLRVQDVDFDYRQITVRM-GKGGKDRVVPLPEKLPPA 320 Query: 210 ILEYYDLCPFDLNLNIQLPLFR-------GI-RGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 + + P R GI R ++ Q+ +R+ R + T Sbjct: 321 LARKLNGAEKLWTWQFVFPATRLSTDLVFGITRRHHIHETSLQKGVRKAARSAAVSKRVT 380 Query: 262 AHTLRHSFATHLL 274 +HTLRHSFATHLL Sbjct: 381 SHTLRHSFATHLL 393 >gi|296328607|ref|ZP_06871124.1| integrase/recombinase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154206|gb|EFG95007.1| integrase/recombinase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 338 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 73/294 (24%), Positives = 133/294 (45%), Gaps = 38/294 (12%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTI----RQLSYTEIRAFISKRRTQKIGDRS 87 S+ T++ Y + FL F+ + E +I + + + ++ A+I DR Sbjct: 43 SEKTVKDYMFHLKDFLHFV-YDGENDFSISEVIPLMQDIEKEDVEAYI----VHLFEDRK 97 Query: 88 LKRS-----LSGIKSFLKYLKKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLV 138 LK++ LS +KS K L+ + + + RN++ N L ++++ + + Sbjct: 98 LKKTSVNTILSALKSLYKELESNGLKNPVKYIKLFKVNRNIE--NVLKVSIDDIRKII-- 153 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLR-IQGKGD 195 L E K+ RN ILY L+ G+R E L+L ++ + +D+ + IQ K Sbjct: 154 --GLYKIDSEKKY---RNITILYTLFYTGMRSKELLTLQFKHYLKREDEYFFKLIQTKSG 208 Query: 196 KIRIVPLLPSVRKAILEY--YDLCPFDLNLNI--QLPLFRG--IRGKPLNPGVFQRYIRQ 249 K P+ S+ K + EY Y + + L+L + +F + PL+ I+ Sbjct: 209 KDVYKPIHKSLVKKLEEYKKYLISMYSLDLKDLDEKYIFSTSVLDNTPLSYRSLNAIIQD 268 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + + +G +S H +RH+ AT L +G D+ I+ LGH T++Y N S Sbjct: 269 MGKLIGKDIS--PHNIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARS 320 >gi|332672868|gb|AEE69685.1| integrase/recombinase [Helicobacter pylori 83] Length = 321 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 69/250 (27%), Positives = 117/250 (46%), Gaps = 29/250 (11%) Query: 48 IFLAF-YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK 106 +FL F Y ++ + +++ R LS ++ F+ + Q S+ + + ++ F YL ++K Sbjct: 77 LFLFFDYFKDNLKLRSFRMLSEEQVINFLFEL-AQNRKPSSMAKYVMYLRQFFDYLDRKK 135 Query: 107 ITTESNIL-NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165 + +L N+ K SLPR LN K + LL S T + + RN IL ++ Sbjct: 136 HYSFDFVLKNLAFAKTKESLPRHLNYKDLKAFL-KTLLEYSPATSF-EKRNKCILLIVIL 193 Query: 166 CGLRISEALSLTPQNIMDDQS--TLRIQGKGDK-----IRIVPLLPSVRKAILEYYDLCP 218 GLR E L++ ++I ++ ++ IQGKG K I+ L PS+ + + Y L Sbjct: 194 GGLRKCEVLNIELKHIQVEEQNYSILIQGKGRKERKAYIKKSLLEPSLNAWLSDDYRLKY 253 Query: 219 FDLNLNIQLPLFRGIRGKPLN--------PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 F+ + LF+ + K N P +F+ + Q++ Y T H RHSFA Sbjct: 254 FN-----GVYLFKKDKQKAQNSLTLYNFIPLIFK--LAQIKHYK--QYGTGLHLFRHSFA 304 Query: 271 THLLSNGGDL 280 T + DL Sbjct: 305 TLIYQETQDL 314 >gi|282890473|ref|ZP_06298996.1| hypothetical protein pah_c022o041 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499470|gb|EFB41766.1| hypothetical protein pah_c022o041 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 167 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 11/122 (9%) Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQ 244 S + I+GKGDK+R PL + D +F R +P+ G+ Sbjct: 17 SIILIRGKGDKLRRCPLWHDTVNELTSLMD------ERGPNEHVFLNHRKEPITRFGIHT 70 Query: 245 RYIRQLRRYLGLPL----STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 R ++ L +P + HT+RH+ ATHLL G D+ +I++ LGH ++TT IY Sbjct: 71 LVKRHVKTALIVPSLEKKRISPHTIRHTTATHLLHAGVDINTIRAWLGHVSINTTNIYVE 130 Query: 301 VN 302 V+ Sbjct: 131 VD 132 >gi|171779406|ref|ZP_02920370.1| hypothetical protein STRINF_01251 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282023|gb|EDT47454.1| hypothetical protein STRINF_01251 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 311 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 12/146 (8%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEY 213 ++ L+ GLR SEAL+LTP++ + TL + + LP SVRK +++ Sbjct: 143 LILLIAKTGLRFSEALALTPKDFDLTRQTLSVSKTWNYKENGGFLPTKNESSVRKIPIDW 202 Query: 214 YDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 + F +L P+F ++GK N V R R + G+P+ + H LRH+ A Sbjct: 203 QTVIQFAELLKSLPEDKPIF--VKGKVYNSTVNDRLARHCKN-AGVPI-ISIHGLRHTHA 258 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQ 296 + LL G + S+ LGH ++TTQ Sbjct: 259 SLLLFAGVSIASVARRLGHSNMTTTQ 284 >gi|303236694|ref|ZP_07323275.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302483198|gb|EFL46212.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 407 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 21/169 (12%) Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIR 198 L+ +E + + R + IL L CGLR + LT +NI L+ + KG Sbjct: 240 LIQCHYENENPNVRRAFILCLY--CGLRFCDVKDLTYKNIDYTNHLLKFEQNKTKGHSAN 297 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL---G 255 ++P + +L P DL+ +I N ++ + ++R++ G Sbjct: 298 SGVVIP-LNDGLLSLIGEAPEDLDTSI------------FNLPTYESCCKSVKRWVKRAG 344 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + + H RHSFA ++L+NG +++++ S+LGH L T+ YT K Sbjct: 345 INKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393 >gi|194433591|ref|ZP_03065868.1| site-specific recombinase [Shigella dysenteriae 1012] gi|194418183|gb|EDX34275.1| site-specific recombinase [Shigella dysenteriae 1012] Length = 252 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/231 (25%), Positives = 98/231 (42%), Gaps = 52/231 (22%) Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL------------L 163 M + + SLP A++ AL L ++H + SA+L+ L Sbjct: 1 MYSAGQPASLPVAIDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVPDLHRKMLLATL 60 Query: 164 YGCGLRISEALSLT-------PQNIMDDQSTL------------RIQGKGDKIRIVPLLP 204 + G RI+EAL+LT P +TL R+ R+VPL Sbjct: 61 WNTGARINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAGRMPAGQQTHRLVPLSD 120 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG------- 255 S + L+ + +++P+ R R G+ +++ R +R ++G Sbjct: 121 SWYVSQLQ-------TMVATLKIPMERRNRRTGRTEKARIWEVTDRTVRTWIGEAVAAAA 173 Query: 256 -----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 174 ADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 224 >gi|150403424|ref|YP_001330718.1| phage integrase family protein [Methanococcus maripaludis C7] gi|150034454|gb|ABR66567.1| phage integrase family protein [Methanococcus maripaludis C7] Length = 322 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 80/305 (26%), Positives = 129/305 (42%), Gaps = 45/305 (14%) Query: 19 QNWLQNLEIER---GLSKLTLQSYECDTRQFLIFLAFY-------TEEKITIQTIRQLSY 68 + W+ ER G+ K T+Q D + +FL F EE + I+ +Y Sbjct: 24 KKWVDKFIAEREFDGIKKTTIQG---DVNRLKVFLNFIFNRLEKNPEEMTNAEFIKFFNY 80 Query: 69 TEIRAFISKRRTQKIGDRSLK-----RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 E +S R TQ +LK L K F ++RK T I K + Sbjct: 81 LEKERKLS-RNTQNKYYNNLKVFYKLMRLENFKDFKDESEERKRFTSFEI------KHYD 133 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 SL + L ++ +L T TK R++ I+ L+ G RISEAL L + Sbjct: 134 SLSTEI-----LNMILTEILETRSTTK---IRDAMIIRFLWDTGARISEALKLEYGDSDL 185 Query: 184 DQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLN-- 239 ++ R++ KG + RIV + L + C +L + +F+ +G+PL Sbjct: 186 EKGEFRLRNTKGKEERIV----TCSNDTLTLVNYCLKANLRKEPKDKIFQTYKGEPLQRN 241 Query: 240 --PGVFQRYIRQLRRYLGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 VF+ +++L+ +P + H+LRH A LL G + ++ LGH L TT Sbjct: 242 RVSDVFRNAVKELKSQGRIPENKRVVIHSLRHGRAVDLLDKGMPIDIVKEYLGHKSLETT 301 Query: 296 QIYTN 300 Y++ Sbjct: 302 LYYSH 306 >gi|15606394|ref|NP_213774.1| hypothetical protein aq_1137 [Aquifex aeolicus VF5] gi|2983608|gb|AAC07178.1| putative protein [Aquifex aeolicus VF5] Length = 290 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 73/311 (23%), Positives = 132/311 (42%), Gaps = 55/311 (17%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + W ++LE + S+ T ++Y ++F F +EK + I L + + F+ + Sbjct: 5 EAWERHLE--KTKSQKTKETYLMLVKEFFKFHK--VDEK---EIIENLKPSMVYRFVDE- 56 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR----------NLKKSNSLPRA 128 + SL +LS ++ FLK+L +R+ +S +++ N KK+ PRA Sbjct: 57 --SDLNPSSLLTTLSALRYFLKFLTRREYIEKSMYESLKAAIEEAREELNAKKTPRYPRA 114 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQST 187 L ++ + + V + I L G+R+ E L+ +N MD Sbjct: 115 LTREEIEAIFEKVK----------GKKYEKIYTLFLYSGIRLGEYEKLSEENFFMDKSGI 164 Query: 188 LRIQ-----GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN--- 239 L I+ K +K R+VP+L + D L + L R I N Sbjct: 165 LWIKLTPEMTKRNKGRLVPILSPDK------------DETLKVTEKLSRWIEDFEGNFRV 212 Query: 240 -PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QI 297 GV Q Y +L + L + S H+ RH++ T+L+++G + ++ GH + TT + Sbjct: 213 KRGVLQVYTDRLSKRLNIDFSI--HSFRHTYITNLINSGFPIEVVKEFAGHSSIKTTVET 270 Query: 298 YTNVNSKNGGD 308 Y + K + Sbjct: 271 YYKFSQKRAQE 281 >gi|291530639|emb|CBK96224.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3] Length = 310 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 68/157 (43%), Gaps = 18/157 (11%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI-------RIVPLLPSVR 207 RN IL L G+RI E +LT +I D + I+ +I R LL Sbjct: 130 RNLGILICL-STGIRIGEVCALTWDDIDIDNGVIHIRKTIQRIYVNEGGVRKTELLIDTP 188 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIR---------GKPLNPGVFQRYIRQLRRYLGLPL 258 K D+ + PL + +R +P P ++ Y ++L LG+P Sbjct: 189 KTATSMRDIPMIKELYEVLKPLKKVVRSDYYVLTNDAEPTEPRTYRNYYKRLLDKLGIP- 247 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 H LRHSFAT + + D +++ ILGH +STT Sbjct: 248 PIKFHGLRHSFATRCIESKCDYKTVSVILGHSNISTT 284 >gi|298528030|ref|ZP_07015434.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298511682|gb|EFI35584.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 338 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 75/291 (25%), Positives = 119/291 (40%), Gaps = 27/291 (9%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 Q L +G+S T+ +Y FL F + I I LS I F+ + + Sbjct: 13 QYLPRTKGVSSNTILAYRHTFSLFLPFASKTLGRDINSLEIGHLSTQLILDFLDHLESGR 72 Query: 83 IGD-RSLKRSLSGIKSF---LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R+ L+ KS +++L I+++ + L L ++ L ++ Sbjct: 73 NNSARTRGHRLAVFKSLARMIRFLYPEHKLLADRIISIPQKRFPKKLAAFLTHEEVLLVL 132 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 D++ L S R+ I++LLY G R E+ SL + TL I GKG++ R Sbjct: 133 DSINLKKSGA-----FRDYTIIHLLYNSGARAEESASLRLDYFDPHKKTLAILGKGNRYR 187 Query: 199 IVPLLPSVRKAILEY---YDLCPFDLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYL 254 + L P + + Y Y P L+ N LF R + G++ R R+YL Sbjct: 188 QIELWPKTVQLMSMYIQKYRPRPKPLHQNT---LFLNQRRQGFTRNGIY----RLCRKYL 240 Query: 255 GLPLSTT-------AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 L H RHS A ++L G L I++ LGH L +T +Y Sbjct: 241 SLVFEENRFQGLNPVHCFRHSCAINMLGTGFSLTDIKNHLGHENLQSTMVY 291 >gi|191168738|ref|ZP_03030516.1| Int [Escherichia coli B7A] gi|331658405|ref|ZP_08359367.1| integrase [Escherichia coli TA206] gi|190901228|gb|EDV60999.1| Int [Escherichia coli B7A] gi|323172004|gb|EFZ57648.1| integrase [Escherichia coli LT-68] gi|331056653|gb|EGI28662.1| integrase [Escherichia coli TA206] Length = 334 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 22/143 (15%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 + L G R SEA L + I+ ++ T ++ K + R VP+ +V +AI Sbjct: 185 VALLCLSTGARWSEACKLRGEQIVHNRVTF-LETKNGRKRTVPISQAVCEAIKTRETGGL 243 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-GLPLSTTAHTLRHSFATHLLSNG 277 F++ ++ + L+R LP AH LRH+FA+H + NG Sbjct: 244 FEVK--------------------YREFCLALKRVKPDLPKGQAAHVLRHTFASHFVMNG 283 Query: 278 GDLRSIQSILGHFRLSTTQIYTN 300 G++ ++Q ILGH + T Y + Sbjct: 284 GNIIALQKILGHATIQQTMAYAH 306 >gi|307565482|ref|ZP_07627968.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307345813|gb|EFN91164.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 410 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 14/156 (8%) Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 ++ C GL + +LTP NI +DD+ + + + + LL + K+I+ Y Sbjct: 249 FIFSCFTGLAYIDVSNLTPDNIVTLDDKLWIMTKRQKTSVETNVLLLDIPKSIIAKYSHK 308 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 + LF + + N Y++++ G+ + T H RH+FAT LS G Sbjct: 309 TYR-----DGKLFPILTNQKTNA-----YLKEIADICGIKKNQTFHLARHTFATMSLSKG 358 Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 + S+ +LGH + TTQIY + +K D M ++ Sbjct: 359 VPMESVSKMLGHTNIKTTQIYARITNKKIEDDMEQL 394 >gi|110597335|ref|ZP_01385623.1| integrase/recombinase-related protein [Chlorobium ferrooxidans DSM 13031] gi|110341171|gb|EAT59639.1| integrase/recombinase-related protein [Chlorobium ferrooxidans DSM 13031] Length = 71 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 31/43 (72%) Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 S T H LRHS+ATHLL G DLR IQ +LGH TT+IYT+V Sbjct: 14 SVTLHWLRHSYATHLLEAGTDLRYIQELLGHKSSKTTEIYTHV 56 >gi|150390613|ref|YP_001320662.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF] gi|149950475|gb|ABR49003.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF] Length = 321 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 12/155 (7%) Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL---LPSV 206 + + R+ I+ L G G R+ +++ ++I + +++ + K + +++PL L V Sbjct: 139 FAEYRDWTIVNYLLGTGNRVDTIVNVRIKDIDFESGYIKLDKTKNKRQQLIPLSNVLAKV 198 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 L+Y D D LF + G LN I++ + G+ L T+ H R Sbjct: 199 LTEYLQYRDGEKEDY-------LFVSVYGAKLNGNSLGHSIKKYNQRRGV-LKTSVHLFR 250 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 H+FA + NGGD+ +Q ILGH L + Y N+ Sbjct: 251 HTFAKKWILNGGDIFRLQKILGHSTLDIVREYVNM 285 >gi|260893051|ref|YP_003239148.1| integrase family protein [Ammonifex degensii KC4] gi|260865192|gb|ACX52298.1| integrase family protein [Ammonifex degensii KC4] Length = 311 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 69/295 (23%), Positives = 121/295 (41%), Gaps = 28/295 (9%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 GL++LTL +Y F+ F + +L IR F R G ++K Sbjct: 26 GLAELTLSTYRKIVTAFVRFCG-------PLVGYEELRRAAIRYFA---RPSSPGYHNIK 75 Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 L +K+F + + + + +R K+ S R L + +L +T Sbjct: 76 --LRHLKAFFNWCVREGHLPANPLEGIRKAKEDLSRVR----HAPLEALKRLLAQPDRKT 129 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL---PSV 206 + R+ +L G R E L +TP ++ L I+ + K R+ L P Sbjct: 130 -YAGLRDYCLLLTQLDTGARPGELLRVTPSDLNLAARELHIRPEVAKTRVGRTLVVSPLT 188 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 +A+ P ++PLF GKP+NP + +R+ + G+ T + LR Sbjct: 189 AQALARLLRARPS--WWGEEVPLFASETGKPMNPTYWAERVREYCQRAGV--KVTPYGLR 244 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321 H+FA L D ++Q +LGH LS T+ Y ++ + +I+++ P + Sbjct: 245 HTFALEFLKASNDPFALQRVLGHRDLSMTRRYVRYLQED----VRQIHEKASPVV 295 >gi|237713490|ref|ZP_04543971.1| tyrosine type site-specific recombinase [Bacteroides sp. D1] gi|262407276|ref|ZP_06083824.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|229446472|gb|EEO52263.1| tyrosine type site-specific recombinase [Bacteroides sp. D1] gi|262354084|gb|EEZ03176.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 419 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 64/135 (47%), Gaps = 10/135 (7%) Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226 GLR + + +T + + + + RI K + V +P +A YDLC + + Q Sbjct: 275 GLRHCDIMKMTWKELTKEGTHYRINFDQKKTKGVEYMPISEQA----YDLCGEPGHPD-Q 329 Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286 L +F G+ R+I G+ T H RH++AT LSNG DL ++ + Sbjct: 330 L-VFEGLPAPSWISKPLARWIEAS----GITKHITFHCFRHTYATLQLSNGTDLFTVSKM 384 Query: 287 LGHFRLSTTQIYTNV 301 LGH + TTQ YT V Sbjct: 385 LGHTNVRTTQRYTKV 399 >gi|323702858|ref|ZP_08114516.1| integrase family protein [Desulfotomaculum nigrificans DSM 574] gi|323532116|gb|EGB21997.1| integrase family protein [Desulfotomaculum nigrificans DSM 574] Length = 358 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 73/301 (24%), Positives = 133/301 (44%), Gaps = 30/301 (9%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ---LSYTEIRAFISKRRTQKIGDR 86 GLS+ T++ Y+ + + FL +L T+ I Q L+Y F + Sbjct: 67 GLSRETVEEYKRNFQHFLNYLN--VNGITTLNLINQHLLLNYVNQLGFFTHY-------- 116 Query: 87 SLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 + R+LS IK +L+YL + +T S ++ K LP ++++ LL Sbjct: 117 TRHRNLSVIKGYLRYLYDQGLTETDFSRVIPKDKYIKQPKLPSTYSKEEV-----KALLA 171 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI-VPLL 203 + R+ A++ + GLR S+ +LT +NI +++ + + + ++RI +PLL Sbjct: 172 AIDRSSPKGKRDYAMVLITALLGLRASDVCNLTFENIQWEKNLIVLNQQKTQVRIELPLL 231 Query: 204 PSVRKAILEYYDL------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 V +AI++Y P+ + L++ P R R + F Y+R+ + Sbjct: 232 SEVGEAIIDYLKYGRPSSELPY-IFLHVTSPYDRLNRSTLHSIVCF--YLRRADIHYEKQ 288 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 H LRHS A LL L I +LGH +T++Y ++ + +E+ + Sbjct: 289 RKHGPHALRHSLAGVLLEKKTPLPVISEVLGHKNTESTRLYLRIDMNSLRQCALEVPPVS 348 Query: 318 H 318 H Sbjct: 349 H 349 >gi|312878202|ref|ZP_07738129.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A] gi|311795015|gb|EFR11417.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A] Length = 324 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/288 (20%), Positives = 128/288 (44%), Gaps = 17/288 (5%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q++L + E+ R LSK T+ Y+ + F+ F ++ +++ + ++ + +I+ Sbjct: 23 QDFLLDCEV-RSLSKWTIDFYKRTLKPFVFF-----GKQNSVEYVNDITKEMVNKYIAHL 76 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + ++ L G+++FL +LKK + +NM LK+ + +++ + Sbjct: 77 KDSIENTTTINTYLRGLRTFLNFLKKEEFLENEIEINM--LKEEEKIKETYSDED---IK 131 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + + + + RN ++ L G R+S +++ ++ + + I+ +K Sbjct: 132 KLLKKPDLKKCSFAEYRNWVLVNYLLETGNRLSSVINIKVSDVDLENGIVTIKHSKNKSH 191 Query: 199 -IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 P+ ++ K + EY NL LF G + ++ IR + G+ Sbjct: 192 YFSPISNTMCKILREYIAT----WNLKEDDYLFPSQSGAQMTKNTIEKAIRDYNKKRGVK 247 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 L T+ H RH+FA + + G+ ++ +LGH L T Y + S++ Sbjct: 248 L-TSIHAFRHTFAKNYIKTNGNPFKLKQLLGHKTLEITNRYVRLYSED 294 >gi|281358281|ref|ZP_06244764.1| integrase family protein [Victivallis vadensis ATCC BAA-548] gi|281315371|gb|EFA99401.1| integrase family protein [Victivallis vadensis ATCC BAA-548] Length = 330 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 54/231 (23%), Positives = 97/231 (41%), Gaps = 21/231 (9%) Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 +R K+ +++R LS SF +L+ +S + + +K + + A ++ Sbjct: 109 ERNVSKVTIDNIRRILS---SFFAWLEDEDYIVKSPVRRIHRIKTAKIIKEAFTDETIEV 165 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L D + RN A++ LL G+R+ E + L +I ++ + + GKG Sbjct: 166 LRDTCS----------EVRNLAMVELLASSGMRVGELVKLNRTDINFNERSCIVFGKGSS 215 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRYL 254 R V + + +Y + D LF +R K L G + +R+L R Sbjct: 216 EREVYFDARTKIHLWQYLNSRTDD-----NPALFVSLRSPHKRLEIGGVEFLLRKLGRIA 270 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + + H R + AT + G + +Q +LGH ++ TT Y VN N Sbjct: 271 AIE-NVHPHRFRRTLATRAIDKGMPIEQVQRLLGHKKIDTTMCYALVNQSN 320 >gi|41057040|ref|NP_957522.1| putative integrase [Streptococcus thermophilus] gi|34980337|gb|AAQ84064.1| putative integrase [Streptococcus thermophilus] Length = 308 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 70/275 (25%), Positives = 115/275 (41%), Gaps = 29/275 (10%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T+++Y+ RQF +L + IRQ ++ AF + + +++ ++ Sbjct: 38 TVETYKKALRQFFNYLGLHG--------IRQPQREDVLAFRDDLKASGLKPTTVQNYITA 89 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNVLLHTSHETKWI 152 + F K+ ++ + NI K N L +QA ++ N+ T Sbjct: 90 TRIFFKWTEQEGLY--PNIAEHVKGAKLDKNHKKDYLTSRQAKEVLANIKTDTEE----- 142 Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKG--DKIRIVPLLPSVRK 208 RN AIL L+ GLR E ++ + + + L +QGKG +K + + V K Sbjct: 143 GLRNYAILSLMVTGGLRTIEVSRADVGDLRTVGENTVLFVQGKGREEKTEYIKISAPVEK 202 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGI----RGKPLNPGVFQRYIRQLRRYLGLPLST-TAH 263 AI Y L DL Q PLF RGK + ++ + G + TAH Sbjct: 203 AIRTY--LKARDLTTEEQ-PLFTSTSNNSRGKRITTRTVSAVVKNALKNAGYDSARLTAH 259 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 +LRH+ T L G ++ +Q H L+TT IY Sbjct: 260 SLRHTAITLALLAGREITEVQQFARHANLNTTMIY 294 >gi|317124017|ref|YP_004098129.1| integrase [Intrasporangium calvum DSM 43043] gi|315588105|gb|ADU47402.1| integrase family protein [Intrasporangium calvum DSM 43043] Length = 308 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 62/233 (26%), Positives = 93/233 (39%), Gaps = 29/233 (12%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN-------VLLH 144 L +++F KYL + + + + P ++ LVD +LL Sbjct: 68 LGSVRTFAKYLHATGVDVQVPPAGILPAGPRRAAPFIYSQSDLDALVDACGQVFTRLLLA 127 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 + T ++ LL GLRI EAL LT +I L I+ K R+VP+ P Sbjct: 128 ATMRT---------VIGLLAATGLRIGEALRLTTGDIDTVAGVLLIRASKRKDRLVPVHP 178 Query: 205 SVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 S +A+ Y DL + PL RG + + +L GL AH Sbjct: 179 STVEALFAYRDLPARAAAHPATGGPLLVSTRGTGYQLSTIEAHFARLATAAGLRPRGAAH 238 Query: 264 T----LRHSFAT-HLL---SNGGD----LRSIQSILGHFRLSTTQIYTNVNSK 304 LRH+FAT H+ S GGD L + + LGH + T Y + + + Sbjct: 239 PRLHDLRHTFATAHMAAAYSRGGDPQRTLTLLATWLGHTSTAHTYWYLSASPE 291 >gi|317490960|ref|ZP_07949396.1| phage integrase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920507|gb|EFV41830.1| phage integrase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 368 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 21/142 (14%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 I + G R SEA +L + + + I+ KG K R VP+ E Y+ Sbjct: 199 IAKICLSTGARWSEAETLEGHQVSKYRISF-IKTKGKKNRTVPI-------TQELYE--- 247 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278 +LP RG P F+R ++ R + LP H LRH+FA+H + NGG Sbjct: 248 -------ELPKNRGRLFTPCRK-AFERAVK--RAGITLPDGQCTHVLRHTFASHFMMNGG 297 Query: 279 DLRSIQSILGHFRLSTTQIYTN 300 ++ ++ +LGH + T IY + Sbjct: 298 NILVLRDVLGHADIRMTMIYAH 319 >gi|297565034|ref|YP_003684006.1| integrase family protein [Meiothermus silvanus DSM 9946] gi|296849483|gb|ADH62498.1| integrase family protein [Meiothermus silvanus DSM 9946] Length = 251 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 10/159 (6%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYD 215 +L L+ G R+SE + L Q+ D + + K +R VP+LP++ + + Sbjct: 97 MLKTLFYTGCRVSEFVFLRAQDAYLDGEAPHLYVHRAKKGSVRYVPILPALAQELR---- 152 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275 L + LF R + +P Q+ I+Q G+ H LRHS A LL Sbjct: 153 ---VHLAGRTRGYLFESNRHQRYSPRAIQKLIQQAAAEAGIEKRVYPHLLRHSVAQILLD 209 Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 G L +Q LGH TTQIY + + G+ ++ Sbjct: 210 RGMPLEQLQKFLGHQDPKTTQIYAESSLASVGESYRRVF 248 >gi|294785567|ref|ZP_06750855.1| integrase/recombinase [Fusobacterium sp. 3_1_27] gi|294487281|gb|EFG34643.1| integrase/recombinase [Fusobacterium sp. 3_1_27] Length = 328 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 73/294 (24%), Positives = 133/294 (45%), Gaps = 38/294 (12%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTI----RQLSYTEIRAFISKRRTQKIGDRS 87 S+ T++ Y + FL F+ + E +I + + + ++ A+I DR Sbjct: 33 SEKTVKDYMFHLKDFLHFV-YDGENDFSISEVIPLMQDIEKEDVEAYI----VHLFEDRK 87 Query: 88 LKRS-----LSGIKSFLKYLKKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLV 138 LK++ LS +KS K L+ + + + RN++ N L ++++ + + Sbjct: 88 LKKTSVNTILSALKSLYKELESNGLKNPVKYIKLFKVNRNIE--NVLKVSIDDIRKII-- 143 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLR-IQGKGD 195 L E K+ RN ILY L+ G+R E L+L ++ + +D+ + IQ K Sbjct: 144 --GLYKIDSEKKY---RNITILYTLFYTGMRSKELLTLQFKHYLKREDEYFFKLIQTKSG 198 Query: 196 KIRIVPLLPSVRKAILEY--YDLCPFDLNLNI--QLPLFRG--IRGKPLNPGVFQRYIRQ 249 K P+ S+ K + EY Y + + L+L + +F + PL+ I+ Sbjct: 199 KDVYKPIHKSLVKKLEEYKKYLISMYSLDLKDLDEKYIFSTSVLDNTPLSYRSLNAIIQD 258 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + + +G +S H +RH+ AT L +G D+ I+ LGH T++Y N S Sbjct: 259 MGKLIGKDIS--PHNIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARS 310 >gi|32451217|emb|CAD55723.1| putative integrase [Bacteroides coprosuis] Length = 192 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 27/163 (16%) Query: 160 LYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPS----VRKAILEY 213 + L+Y RI+E LS+ ++I D+ + + GKG KIR + LLP ++ I E+ Sbjct: 1 MILMYATAARINEILSIKIEDIHIEVDKPYITVVGKGGKIRTLYLLPKAISHLKAYIREF 60 Query: 214 YDLCPFDLNLNIQLPLF----RGIRGKPLNPGVFQRYIRQLRRYLG--------LPLSTT 261 + + + + LF GI GK + V +QL+++ +P + Sbjct: 61 HGVKSPN-----EAYLFYSRNHGIYGKLSDVAVN----KQLKKHADAARLSCKEVPDNMH 111 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 AH RH+ ATH + +G + I +LGH L+TT Y ++ ++ Sbjct: 112 AHIFRHAKATHWMDDGMQIVQISYLLGHSNLNTTMKYLDITTE 154 >gi|222834321|gb|EEE72798.1| predicted protein [Populus trichocarpa] Length = 662 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/196 (26%), Positives = 86/196 (43%), Gaps = 27/196 (13%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ---TIRQLSYTEIRAFISK 77 +L L R L+ TL SY D L+ + I + + L IR+F ++ Sbjct: 479 YLDWLATSRKLAAHTLTSYGHD-------LSVLQSQAIRLAPGVALLALETRHIRSFAAR 531 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALT 136 + R++ R+LS + F + + +SN ++ +R K+ LP+AL+ + A+ Sbjct: 532 LHGNGLSARTIARTLSAWRGFYLWAARHGHGVQSNPVDGVRAPKRGRPLPKALSVEHAVA 591 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-----------DQ 185 LV H +T R+ A+ L Y GLR+SE + L + D D Sbjct: 592 LV----AHRQDDTN-ESLRDQAVFELFYSSGLRLSELIQLDVRYTEDGDYRSSGWLDLDG 646 Query: 186 STLRIQGKGDKIRIVP 201 + + + GKG + R VP Sbjct: 647 AEVTVLGKGSRRRTVP 662 >gi|218260603|ref|ZP_03475830.1| hypothetical protein PRABACTJOHN_01493 [Parabacteroides johnsonii DSM 18315] gi|218224449|gb|EEC97099.1| hypothetical protein PRABACTJOHN_01493 [Parabacteroides johnsonii DSM 18315] Length = 406 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/170 (24%), Positives = 81/170 (47%), Gaps = 17/170 (10%) Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI 199 ++L K ++ ++ ++ GL S+ L+P++++ D++ L I+ K +I Sbjct: 232 IILAKEFTIKRVEQVRDVFVFCIFT-GLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKI 290 Query: 200 ---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +P+LP + +Y D+ L LP+ R Y++++ G+ Sbjct: 291 MCNIPVLPVAASILDKYKDVAECTGKL---LPVLSNQR--------MNSYLKEIADVCGI 339 Query: 257 PLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + + HT RHS+AT + L+NG + ++ +LGH S T+ Y V +N Sbjct: 340 HKNLSTHTARHSYATSICLANGVSIENVAKMLGHADTSVTKHYARVLDQN 389 >gi|332204893|gb|EGJ18958.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus pneumoniae GA47901] Length = 321 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/252 (23%), Positives = 114/252 (45%), Gaps = 27/252 (10%) Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRS----LKRSLSGIKSFLKYLKKRKITTESNILNM 116 +++ QL+ ++R++++ +++K ++ ++R LS SF +L++ + ++ I + Sbjct: 80 ESVTQLTTDDLRSYLANYQSEKDCSKANLDNIRRILS---SFFAWLEQEEYIIKNPIRRI 136 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 + +K ++ ++ + DN + R+ AI+ LL G+R+ E + L Sbjct: 137 KKIKTEQNVKETYTDEHLEIMRDNCE----------NLRDLAIIDLLASTGMRVGELVQL 186 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI-LEYYDLCPFDLNLNIQLPLFRGIRG 235 +I + + GKG K R P+ R I L Y + + LF + G Sbjct: 187 NRSDIDFENRECVVFGKGKKER--PVYFDARTKIHLRNY----LNDRKDSHPALFVTLVG 240 Query: 236 KPLNPGV--FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 K G+ + +R+L LG+ H R + AT + G + +Q +LGH ++ Sbjct: 241 KVQRLGIAGVEIRLRKLGDKLGIQ-KVPPHKFRRTLATKAIDKGMPIEQVQKLLGHSKID 299 Query: 294 TTQIYTNVNSKN 305 TT Y VN N Sbjct: 300 TTLAYAMVNQNN 311 >gi|218132478|ref|ZP_03461282.1| hypothetical protein BACPEC_00337 [Bacteroides pectinophilus ATCC 43243] gi|217992588|gb|EEC58590.1| hypothetical protein BACPEC_00337 [Bacteroides pectinophilus ATCC 43243] Length = 350 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 69/284 (24%), Positives = 124/284 (43%), Gaps = 30/284 (10%) Query: 38 SYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEI-------RAFISKRRTQKIG 84 +Y D R F F+ ++ + ++IT+ +S T+I R ++ R Sbjct: 46 AYAMDLRGFFEFIRERKYNSYESLKQITLVDAENISSTDIIEYLRHSRLYVKNGREVTNS 105 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 +R+ KR LS ++SF Y K+ + ++ + K + L+ + L+DNV Sbjct: 106 ERAAKRKLSSLRSFYGYYNKQGLMKKNPAFQVDMPKIHDQAITRLDVNEVAELLDNVESG 165 Query: 145 --------TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 +HE + R+ A+L LL G G+R+SE + L ++ D +++ KG Sbjct: 166 NRLTKNQLAAHEE--LKTRDLALLTLLLGTGIRVSECVGLDINDVDFDNDRIKVVRKGGA 223 Query: 197 IRIVPLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 V VR+A+L+Y D L P + N LF K L + +++ Sbjct: 224 ESFVYFGDEVREALLDYMDERSTLQPAAGHEN---ALFISRNNKRLCVRSVENLVKKYAM 280 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + T H LR ++ T+L D+ + +LGH ++TT+ Sbjct: 281 TVTTVKHITPHKLRSTYGTNLYQESNDIYLVADVLGHKDVNTTR 324 >gi|329957482|ref|ZP_08297957.1| site-specific recombinase, phage integrase family [Bacteroides clarus YIT 12056] gi|328522359|gb|EGF49468.1| site-specific recombinase, phage integrase family [Bacteroides clarus YIT 12056] Length = 393 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 74/148 (50%), Gaps = 16/148 (10%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGK---GDKIRIVPLLPSVRKAILEY 213 A L+ Y G+R S+ +L+ +NI+D +Q T I G ++R+ L K I+ Sbjct: 237 AFLFCCYA-GMRYSDFTNLSSENIVDINQETWLIYKSVKTGTEVRLPLYLLFAGKGII-- 293 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 L + NL FR +N + L + GL + + HT RH+ AT L Sbjct: 294 -ILNKYRDNLE---GFFRLRDNSNVNKDLLT-----LAKLAGLSKNISFHTARHTNATLL 344 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + NG ++ ++Q +LGH + TTQ+YTN+ Sbjct: 345 IYNGVNITTVQKLLGHKSVKTTQVYTNI 372 >gi|237750988|ref|ZP_04581468.1| phage integrase [Helicobacter bilis ATCC 43879] gi|229373433|gb|EEO23824.1| phage integrase [Helicobacter bilis ATCC 43879] Length = 370 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/207 (25%), Positives = 102/207 (49%), Gaps = 30/207 (14%) Query: 106 KITTESNILNM-RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLY 164 +I T+SN + + ++ KK + P+ LN+ L V ++L H +TK +D R L Sbjct: 151 EIFTDSNPMQIIKHKKKEYAEPQRLNDPLNLNQVMDILKHL--KTKDMDNRLKMYFQLAL 208 Query: 165 GCGLRISEALSLTPQNIMDDQSTLRI-----QGKGD-----------KIRIVPLLPSVRK 208 G+R++E L+L +I +++T+++ QG I+I+P L S+ K Sbjct: 209 LTGMRVNEILALKYSDINVEKNTIQVYKSLQQGTNTISTTKTENGKRNIQILPFLKSLLK 268 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 L+ N +F RG ++ ++Y +++ + L + T ++ RH+ Sbjct: 269 DTLD----------TNGSGYIFLNKRGGFISDSTMRKYFKKILQELNIG-DRTLYSTRHT 317 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTT 295 FA+ +++ G D+ + +LGH ++TT Sbjct: 318 FASIMIAYGEDIAWVSKMLGHKDIATT 344 >gi|146307138|ref|YP_001187603.1| phage integrase family protein [Pseudomonas mendocina ymp] gi|145575339|gb|ABP84871.1| phage integrase family protein [Pseudomonas mendocina ymp] Length = 335 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 19/144 (13%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 I + G R EA +LTP+ + + T K + R +P+ ++ KA+ Y+ Sbjct: 188 IARVCLSTGARWGEAQALTPERVRNGMVTF-ANTKSKRTRSIPIDSALEKALHVYFKR-- 244 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278 L N L F R + + + LP H LRH+FA+H + GG Sbjct: 245 HGLFTNCML--------------TFSRVLE--KTSIKLPAGQATHVLRHTFASHFVMRGG 288 Query: 279 DLRSIQSILGHFRLSTTQIYTNVN 302 ++ ++Q ILGH L+ T Y +++ Sbjct: 289 NILTLQKILGHTSLAMTMRYAHLS 312 >gi|229079526|ref|ZP_04212065.1| Integrase-recombinase [Bacillus cereus Rock4-2] gi|228703805|gb|EEL56252.1| Integrase-recombinase [Bacillus cereus Rock4-2] Length = 390 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 65/153 (42%), Gaps = 10/153 (6%) Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 N IL L G RI E + +++ D + L++ GKGDK+R + + + + I E Sbjct: 218 NYTILLALASTGARIQELCTARVKDLHYDGKYWLKVTGKGDKVRELFISEHLYQCICEMR 277 Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266 L + PLF RG N + + + L TAHT R Sbjct: 278 RRRGLQTVLEKGDESPLFINQRGSAYNSKTLSNQVTDMIKKTNLKFLLYRENPVTAHTFR 337 Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298 H+FA + G DL + LGH + TT+IY Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370 >gi|300775106|ref|ZP_07084968.1| integrase [Chryseobacterium gleum ATCC 35910] gi|300505846|gb|EFK36982.1| integrase [Chryseobacterium gleum ATCC 35910] Length = 308 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 78/187 (41%), Gaps = 42/187 (22%) Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTL-------RIQGKGDKIRIVPLL---PSVRKA 209 +Y+ G+RI E +LT ++I D + RI D R L+ P + + Sbjct: 134 VYICLSAGMRIGEVCALTWEDIDTDNGIISINRTIQRIYVIEDGTRRTELILDTPKTKNS 193 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGI----------RGKPLNPGVFQRYIRQLRRYLGLPLS 259 I E P +L L F+ I KP P ++ Y + L + L +P Sbjct: 194 IRE----IPISKDLLRILKPFKKIVNQSFFVLTNDAKPTEPRTYRSYYKNLMKELKMP-E 248 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H LRHSFAT + + D +++ +LGH +STT + +Y HP Sbjct: 249 LKFHGLRHSFATRCIESNCDYKTVSVLLGHSNISTT---------------LNLY--VHP 291 Query: 320 SITQKDK 326 ++ QK K Sbjct: 292 NMEQKKK 298 >gi|332661864|ref|YP_004451334.1| integrase family protein [Haliscomenobacter hydrossis DSM 1100] gi|332337361|gb|AEE54461.1| integrase family protein [Haliscomenobacter hydrossis DSM 1100] Length = 524 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 73/153 (47%), Gaps = 10/153 (6%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-----QGKGDKIRIVPLLPSVRKAILE 212 I+ L+ CGLR++E + L +N Q+T+ + + K + R +PL + +A+ + Sbjct: 52 VIILLMLDCGLRVTEVVQLQRKNFNFMQNTVTVASLKKRSKRLRTRTIPLSTRLLEALAD 111 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 Y+ P + + L+ V + I++ + P H LRH+FAT Sbjct: 112 YWPRIKDPEPDTYIFPAAKTSKALYLSRVVVWKRIKKYSGGVVHP-----HMLRHTFATR 166 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 ++ G D+R Q +LGH TT+IY +V + Sbjct: 167 VVREGNDIRVAQKLLGHNSQLTTEIYLHVEDQE 199 >gi|330814558|ref|YP_004362733.1| Phage integrase family protein [Burkholderia gladioli BSR3] gi|327374550|gb|AEA65901.1| Phage integrase family protein [Burkholderia gladioli BSR3] Length = 611 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 65/270 (24%), Positives = 99/270 (36%), Gaps = 59/270 (21%) Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166 +T + L+ +LP + + L D W AR A++ L+ Sbjct: 352 VTDPKPVKRATKLQVQRALPIDVWSRVRAELADRAEGFGPQGPDWRVAR--ALVLLMGDA 409 Query: 167 GLRISEALS--------LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY---- 214 GLRI EA++ ++ + LR+ GKG+K RIVPL +A+ E++ Sbjct: 410 GLRIEEAVTAERGGLQWWPAEDEIPATWMLRLIGKGNKERIVPLTEDAVEALREHWQDRG 469 Query: 215 -DLCPFDLNLNIQLPLFRGIRGKPLNPG-----------------------------VFQ 244 DL N + +LPL P G Sbjct: 470 LDLDALGANAD-RLPLVAPTVVPPTPAGRDKFGVTDTGQVTRVAGYTPRAARRVVTRALG 528 Query: 245 RYIRQL-------RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 R + QL RR L T+ H RH+F T + G + +Q +LGH L TT I Sbjct: 529 RLLEQLPDLEESARRQLA---GTSPHAFRHTFGTQSAAAGMAIEVLQQVLGHGSLQTTTI 585 Query: 298 YTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327 Y N + M + + H + +D K Sbjct: 586 YVNAEQQR----MRQESAKYHARLAARDLK 611 >gi|300924591|ref|ZP_07140553.1| site-specific recombinase, phage integrase family [Escherichia coli MS 182-1] gi|300419222|gb|EFK02533.1| site-specific recombinase, phage integrase family [Escherichia coli MS 182-1] Length = 334 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 22/143 (15%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 + L G R SEA L + I+ ++ T ++ K + R VP+ +V +AI Sbjct: 185 VALLCLSTGARWSEACKLRGEQIVHNRVTF-LETKNGRKRTVPISQAVCEAIKTRETGGL 243 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-GLPLSTTAHTLRHSFATHLLSNG 277 F++ ++ + L+R LP AH LRH+FA+H + NG Sbjct: 244 FEVK--------------------YREFCLALKRVKPDLPKGQAAHVLRHTFASHFVMNG 283 Query: 278 GDLRSIQSILGHFRLSTTQIYTN 300 G++ ++Q ILGH + T Y + Sbjct: 284 GNIIALQKILGHATIQQTMAYAH 306 >gi|224370500|ref|YP_002604664.1| Phage integrase/recombinase family protein [Desulfobacterium autotrophicum HRM2] gi|223693217|gb|ACN16500.1| Phage integrase/recombinase family protein [Desulfobacterium autotrophicum HRM2] Length = 301 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 67/280 (23%), Positives = 123/280 (43%), Gaps = 21/280 (7%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 ++ +Y+ R FL FL + E++ R +++ + AF + Q R++ LS Sbjct: 22 SVDTYDRAIRTFLDFLGISSPEEL-----RTITHGHVIAFKKFLQDQGRSARTINNRLSA 76 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD-NVLLHTSHETKWID 153 I S +L +++ +N+ K + + E + L V+ LL++ +K Sbjct: 77 ISSLFNHLIDQQVVK----INVAQGVKRMPVNASRVEAKVLAPVEVRNLLNSPDVSKLQG 132 Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-----GKGDKIRIVPLLPSVRK 208 R+ AIL L+ G R+SE SL ++ ++Q + GK +++ I L Sbjct: 133 LRDKAILSTLFFTGCRVSEVCSLKVRDFYEEQGFFVLDFWVKGGKRNRMAINQELQITLD 192 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-RRY---LGLPLSTTAHT 264 L P D + LP+ G + + +R I L +Y +G+ T H+ Sbjct: 193 QYLTETGHGP-DQASFLFLPVKSGYKALDPKRKLSRRTIDHLFNKYANTIGIA-GITPHS 250 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 R +F T L N + ++Q +GH ++ TTQ+Y +K Sbjct: 251 ARATFITQALENNCPIEAVQKTVGHAQIKTTQMYDKRTAK 290 >gi|291529887|emb|CBK95472.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3] Length = 327 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 65/284 (22%), Positives = 122/284 (42%), Gaps = 38/284 (13%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS----KRRTQKIGD 85 G S+ TL+ Y + L + + +R + ++R++++ K ++ K+ Sbjct: 64 GCSEKTLKYYNATIQAMLTCVG---------KGVRHIVTDDVRSYLTEYQEKNQSSKVTI 114 Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 +++R LS SF +L+ +S + + +K ++ + +AL L+ + Sbjct: 115 DNIRRILS---SFFSWLEDEDYILKSPVRRIHKVKTGTNIKETYTD-EALELMRD----- 165 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 + R+ AI+ +L G+R+ E + L +I ++ + GKGDK RIV Sbjct: 166 ----SCTELRDLAIIDMLASTGMRVGEMVLLNRADINFNERECVVFGKGDKERIVYFDAR 221 Query: 206 VRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 + + Y D P L +++Q P K L + +R+ + LGL Sbjct: 222 TKIHLQNYLNSRRDENPA-LFVSLQKP------HKRLQISGIEVRLREYGKRLGLS-KVH 273 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 H R + AT + G + +Q +LGH R+ TT Y V N Sbjct: 274 PHKFRRTLATMAIDKGMPIEQLQQLLGHRRIDTTLQYAMVKQSN 317 >gi|229015121|ref|ZP_04172177.1| Integrase/recombinase [Bacillus mycoides DSM 2048] gi|228746174|gb|EEL96121.1| Integrase/recombinase [Bacillus mycoides DSM 2048] Length = 330 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 65/286 (22%), Positives = 131/286 (45%), Gaps = 32/286 (11%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE------IRAFISKRRTQK 82 R L T++ Y + + FL L TE++I + ++ + TE + ++ R K Sbjct: 41 RNLRPFTIKYYLNELQAFLNLL---TEQEIDVSILKPYNMTEEHVKENVILYMKNYRGIK 97 Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 + S+ L +++F +L K+K + + N++ LK + +++Q N L Sbjct: 98 VV--SINTRLRALRAFYNFLYKQKHIPRNPMENIKLLKDRKRIIPTFSKEQL-----NKL 150 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVP 201 + + R+ I+ L+ G+RI+E + L+ ++I + S L I+ K + R VP Sbjct: 151 FRQPNLRTFTGVRDYTIMMLMLETGIRINELVGLSVKDIRWEDSLLVIRNAKSYRERQVP 210 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQRY-----IRQLRRYLG 255 + ++ + +Y + + + LF + G L G+ QR + Q++ Sbjct: 211 IQKDMKSQLKKYIAIRGYVESS----ALFVTVDGTRLTRRGIQQRISIYGNMAQIK---- 262 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + + HT RH+FA + G ++ +Q+ILGH + + Y N+ Sbjct: 263 -DVRCSPHTFRHTFAKLSVQQGANIFELQAILGHTNMEIVRTYVNL 307 >gi|15900773|ref|NP_345377.1| phage integrase family integrase/recombinase [Streptococcus pneumoniae TIGR4] gi|111656825|ref|ZP_01407676.1| hypothetical protein SpneT_02001908 [Streptococcus pneumoniae TIGR4] gi|148988317|ref|ZP_01819764.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP6-BS73] gi|148993703|ref|ZP_01823150.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP9-BS68] gi|149002427|ref|ZP_01827361.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP14-BS69] gi|168490325|ref|ZP_02714524.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae SP195] gi|182683810|ref|YP_001835557.1| phage integrase family integrase/recombinase [Streptococcus pneumoniae CGSP14] gi|225858687|ref|YP_002740197.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae 70585] gi|225861217|ref|YP_002742726.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae Taiwan19F-14] gi|237650544|ref|ZP_04524796.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae CCRI 1974] gi|237822639|ref|ZP_04598484.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae CCRI 1974M2] gi|298229452|ref|ZP_06963133.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254243|ref|ZP_06977829.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503103|ref|YP_003725043.1| phage integrase/recombinase [Streptococcus pneumoniae TCH8431/19A] gi|303262774|ref|ZP_07348712.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP14-BS292] gi|303267703|ref|ZP_07353526.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae BS457] gi|303270062|ref|ZP_07355780.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae BS458] gi|307127558|ref|YP_003879589.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae 670-6B] gi|14972364|gb|AAK75017.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae TIGR4] gi|147759364|gb|EDK66356.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP14-BS69] gi|147925998|gb|EDK77072.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP6-BS73] gi|147927783|gb|EDK78806.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP9-BS68] gi|182629144|gb|ACB90092.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae CGSP14] gi|183571337|gb|EDT91865.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae SP195] gi|225720290|gb|ACO16144.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae 70585] gi|225727056|gb|ACO22907.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae Taiwan19F-14] gi|298238698|gb|ADI69829.1| phage integrase/recombinase [Streptococcus pneumoniae TCH8431/19A] gi|301794021|emb|CBW36419.1| putative integrase/recombinase [Streptococcus pneumoniae INV104] gi|301801716|emb|CBW34422.1| putative integrase/recombinase [Streptococcus pneumoniae INV200] gi|302636096|gb|EFL66593.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP14-BS292] gi|302640408|gb|EFL70837.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae BS458] gi|302642766|gb|EFL73090.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae BS457] gi|306484620|gb|ADM91489.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae 670-6B] gi|332073220|gb|EGI83699.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus pneumoniae GA17570] gi|332076174|gb|EGI86640.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus pneumoniae GA41301] gi|332076339|gb|EGI86804.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus pneumoniae GA17545] Length = 321 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 58/252 (23%), Positives = 114/252 (45%), Gaps = 27/252 (10%) Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRS----LKRSLSGIKSFLKYLKKRKITTESNILNM 116 +++ QL+ ++R++++ +++K ++ ++R LS SF +L++ + ++ I + Sbjct: 80 ESVTQLTTDDLRSYLANYQSEKDCSKANLDNIRRILS---SFFAWLEQEEYIIKNPIRRI 136 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 + +K ++ ++ + DN + R+ AI+ LL G+R+ E + L Sbjct: 137 KKIKTEQNVKETYTDEHLEIMRDNCE----------NLRDLAIIDLLASTGMRVGELVQL 186 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI-LEYYDLCPFDLNLNIQLPLFRGIRG 235 +I + + GKG K R P+ R I L Y + + LF + G Sbjct: 187 NRSDIDFENRECVVFGKGKKER--PVYFDARTKIHLRNY----LNDRKDSHPALFVTLVG 240 Query: 236 KPLNPGV--FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 K G+ + +R+L LG+ H R + AT + G + +Q +LGH ++ Sbjct: 241 KVQRLGIAGVEIRLRKLGDKLGIQ-KVHPHKFRRTLATKAIDKGMPIEQVQKLLGHSKID 299 Query: 294 TTQIYTNVNSKN 305 TT Y VN N Sbjct: 300 TTLAYAMVNQNN 311 >gi|220918789|ref|YP_002494093.1| integrase family protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219956643|gb|ACL67027.1| integrase family protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 392 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 30/166 (18%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ----------GKGDKIRIVP 201 +D R A + L GLR E ++L ++ + + I+ KG K R+VP Sbjct: 208 LDPRILAAVLLGGNAGLRAGEVVALELPDVRRANARITIERQAWRGVVDTPKGGKGRVVP 267 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR------GKPLNPGVFQRYIRQLRRYLG 255 + +++ A+ L RG R G L V + +++ +R G Sbjct: 268 MTDALKAALAAVRHL--------------RGARVLVQDDGSDLTAKVLRGWMKSAQRLAG 313 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 L + H LRH+F +HL G + IQ + GH LSTT Y ++ Sbjct: 314 LRPTGNFHILRHTFCSHLAMRGAPAKVIQELAGHTHLSTTMRYMHL 359 >gi|149911917|ref|ZP_01900516.1| Hypothetical bacteriophage integrase [Moritella sp. PE36] gi|149805010|gb|EDM65038.1| Hypothetical bacteriophage integrase [Moritella sp. PE36] Length = 322 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 57/143 (39%), Gaps = 20/143 (13%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 + L G R SEA L +I+ + T K K R VP+ P I Sbjct: 183 VAKLCLSTGARWSEAAELRGNDIIHGRVTFN-DTKNGKNRTVPITPEFMNEI-------- 233 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278 G G+ N + Y + LP H LRH+FA+H + NGG Sbjct: 234 -----------HNGKTGRLFNSSYMEFYDVLKAQGFDLPKGQATHVLRHTFASHFMMNGG 282 Query: 279 DLRSIQSILGHFRLSTTQIYTNV 301 ++ ++Q ILGH + T Y ++ Sbjct: 283 NILTLQKILGHSTIMQTMTYAHL 305 >gi|262382300|ref|ZP_06075437.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262295178|gb|EEY83109.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 408 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 75/150 (50%), Gaps = 15/150 (10%) Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQS----TLRIQGKGDKIRIVPLLPSVRKAILE 212 ++ +Y GL + +L P+++ +D + ++ + K + I +PLL S+ K ILE Sbjct: 251 DVFIFCVYT-GLAFIDVYNLRPEHVSEDSNGNLWIVKPREKTNNICNIPLL-SIPKQILE 308 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 Y P+ ++ LP+ P N + Y++++ G+ + T HT RHSFA+ Sbjct: 309 KYKDNPYCMDKGTLLPV-------PCNQKM-NSYLKEIADLCGIKKNLTTHTARHSFASV 360 Query: 273 L-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + L+N L ++ +LGH TQ Y V Sbjct: 361 IALANNVSLPNVAKMLGHSSTRMTQHYAKV 390 >gi|260599046|ref|YP_003211617.1| Integrase [Cronobacter turicensis z3032] gi|260218223|emb|CBA33120.1| Integrase [Cronobacter turicensis z3032] Length = 339 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 25/146 (17%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 I + G R SEA +L + + T + KG K R VP+ + YD P Sbjct: 199 IAKICLATGARWSEAENLQGHQLSKYRITY-TKTKGKKNRTVPISQDL-------YDELP 250 Query: 219 FDLNLNIQLPLFRGIRGKPLNPG--VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 + RGK P F+R ++ R + LP H LRH+FA+H + N Sbjct: 251 KN-------------RGKLFTPCRKAFERAVK--RAGIDLPEGQCTHVLRHTFASHFMMN 295 Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVN 302 GG++ ++ ILGH + T IY + + Sbjct: 296 GGNILVLKEILGHADIKMTMIYAHFS 321 >gi|124004365|ref|ZP_01689211.1| transposase, putative [Microscilla marina ATCC 23134] gi|123990435|gb|EAY29934.1| transposase, putative [Microscilla marina ATCC 23134] Length = 420 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/145 (24%), Positives = 71/145 (48%), Gaps = 14/145 (9%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQS---TLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 ++ C G S+ + L P+++++ ++ + K I +PLLP R IL+ Y Sbjct: 267 FVFQCFTGFAFSDIVDLKPEHLIEQGERTWIIKERVKSSTIAKMPLLPQAR-FILDKYKD 325 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 P L+ + +P+ + G + Y++ + Y+G+ T+H R +FAT + + Sbjct: 326 DPVCLSKGVLIPV--------ITSGNYNTYLKMIAEYVGIDKHLTSHVGRRTFATLVYNA 377 Query: 277 GGDLRSIQSILGHFRLSTTQIYTNV 301 G D ++ + GH + T+IY ++ Sbjct: 378 GTDRSKLKEMTGHTNEAITEIYASL 402 >gi|241889568|ref|ZP_04776866.1| tyrosine recombinase XerC [Gemella haemolysans ATCC 10379] gi|241863190|gb|EER67574.1| tyrosine recombinase XerC [Gemella haemolysans ATCC 10379] Length = 348 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 5/152 (3%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213 AR+ AIL L G+R++E +L ++I S + + KG+K+ V + S + EY Sbjct: 190 ARDLAILTLFLKSGIRVNELANLKVKDIDFLNSEINVIRKGNKVDTVIITKSALDRLNEY 249 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 F LN + + + G L+ Q+ + + +P+S H LRHS+ T L Sbjct: 250 ITSLSFKLNREDYVFISKNKTG--LSIRAIQKLVMKYTDTFNVPMS--PHKLRHSYGTKL 305 Query: 274 -LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 L G++ I + +GH T+ +Y N + K Sbjct: 306 ALKTNGNIPIIMTQMGHSNSDTSMLYINESKK 337 >gi|225420398|ref|ZP_03762701.1| hypothetical protein CLOSTASPAR_06743 [Clostridium asparagiforme DSM 15981] gi|225040961|gb|EEG51207.1| hypothetical protein CLOSTASPAR_06743 [Clostridium asparagiforme DSM 15981] Length = 288 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/174 (26%), Positives = 81/174 (46%), Gaps = 16/174 (9%) Query: 133 QALTLVDNVLLHTSHETK----WIDARNSA--ILYLLYGCGLRISEALSLTPQNIMDDQS 186 Q + +D+V+ +E W D + + I+ + G+R+SE ++L + D Q Sbjct: 105 QQKSFIDHVISQADYEYLKNRLWEDEQYTFYFIVRFIAATGVRVSELVALV---LPDVQV 161 Query: 187 TLR-IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245 R + KG+K R + + S++K L++ PLF G+P+ ++ Sbjct: 162 GYRDLYSKGNKTRRIYIPSSLQKMCLDW-----LAAEGRRDGPLFISRLGRPMTVSGIRK 216 Query: 246 YIRQLR-RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 ++ RY P H+ RH FA + + NGGD+ + +LGH + TT IY Sbjct: 217 QLKTFAIRYHLDPEVMYPHSFRHRFAKNFIENGGDIAFLSDLLGHDSIETTHIY 270 >gi|218262162|ref|ZP_03476721.1| hypothetical protein PRABACTJOHN_02394 [Parabacteroides johnsonii DSM 18315] gi|218223568|gb|EEC96218.1| hypothetical protein PRABACTJOHN_02394 [Parabacteroides johnsonii DSM 18315] Length = 406 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 65/251 (25%), Positives = 115/251 (45%), Gaps = 39/251 (15%) Query: 78 RRTQKIGDRSLKRSLSG--IKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNE--- 131 RR K+ D L R ++G ++ F YLK K ++ ++ M+ KK +L A NE Sbjct: 149 RRDYKVDDMLL-REVNGELVRKFDLYLKTEKHCAQNTVIRYMKCFKKVINLAIA-NEWLT 206 Query: 132 ---------------KQALTLVD-NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175 KQ L+ + N + + ++ ++ +Y GL + + Sbjct: 207 KNPFAGIKFHEVEVNKQFLSQAEINRIWQKEFRIERLELVRDVFIFCVYT-GLAFIDVYN 265 Query: 176 LTPQNIMDDQS----TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231 L P++I +D + ++ + K + + +PLL S+ K ILE Y P+ ++ LP+ Sbjct: 266 LRPEHISEDSNGNLWIVKPREKTNNLCNIPLL-SIPKQILEKYKDNPYCMDKGTLLPV-- 322 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHF 290 P N + Y++++ G+ + T HT RHSFA+ + L+N L ++ +LGH Sbjct: 323 -----PCNQKM-NSYLKEIADLCGIKKNLTTHTARHSFASVIALANNVSLPNVAKMLGHS 376 Query: 291 RLSTTQIYTNV 301 TQ Y V Sbjct: 377 STRMTQHYAKV 387 >gi|57506012|ref|ZP_00371936.1| site-specific recombinase, phage integrase family [Campylobacter upsaliensis RM3195] gi|57015812|gb|EAL52602.1| site-specific recombinase, phage integrase family [Campylobacter upsaliensis RM3195] Length = 314 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 87/199 (43%), Gaps = 20/199 (10%) Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173 LN RN K+ L LN+ + L++ + + + RN+ ++ L+ GLRISEA Sbjct: 118 LNTRNEKREEKLE-YLNDDEIQRLINVLEQQKIKKDDYASFRNAFLIKLMLYAGLRISEA 176 Query: 174 LSLTPQNIMDDQSTL---RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230 L + + +D+ + RI KG K + L+Y F +L Q + Sbjct: 177 LRVRLCDFSEDEEDMLKIRIFAKGAKEQFAYAKKDYIDDELDY-----FKEHLKEQDYIM 231 Query: 231 RGIRGKPLNPG-----VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285 + GK LN V + Y + L GL H LRHS A L S +L IQ Sbjct: 232 QTNTGKLLNRSNAFIIVNRIYAKALINKKGL------HLLRHSLAMKLTSQNINLVVIQK 285 Query: 286 ILGHFRLSTTQIYTNVNSK 304 IL H + TT IY NS+ Sbjct: 286 ILRHTSMQTTTIYAKANSE 304 >gi|123441995|ref|YP_001005978.1| P2-like phage integrase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088956|emb|CAL11767.1| P2-like phage integrase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 327 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 22/141 (15%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221 L G R E L I+ ++ T + K K R VP+ ++LC Sbjct: 187 LCLATGARWGEVAKLRRDEIIGNKVTY-LDTKNSKNRTVPI----------SHELCE--- 232 Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL--GLPLSTTAHTLRHSFATHLLSNGGD 279 L GI+ PL + Y+R + + GLP H LRH+FA+H + NGG+ Sbjct: 233 ------QLTDGIKTGPLFKSLNYPYVRICVKEVAPGLPAGQAVHVLRHTFASHFMMNGGN 286 Query: 280 LRSIQSILGHFRLSTTQIYTN 300 + ++Q ILGH + T Y + Sbjct: 287 ILALQKILGHSNILQTMNYAH 307 >gi|193068261|ref|ZP_03049225.1| integrase [Escherichia coli E110019] gi|192958540|gb|EDV88979.1| integrase [Escherichia coli E110019] Length = 334 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 22/143 (15%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 + L G R SEA L + I+ ++ T ++ K + R VP+ +V +AI Sbjct: 185 VALLCLSTGARWSEACKLRGEQIVHNRVTF-LETKNGRKRTVPISQAVCEAIKTRETGGL 243 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-GLPLSTTAHTLRHSFATHLLSNG 277 F++ ++ + L+R LP AH LRH+FA+H + NG Sbjct: 244 FEVK--------------------YREFCLALKRVKPDLPKGQAAHVLRHTFASHFVMNG 283 Query: 278 GDLRSIQSILGHFRLSTTQIYTN 300 G++ ++Q ILGH + T Y + Sbjct: 284 GNIIALQKILGHATIQQTMAYAH 306 >gi|124004236|ref|ZP_01689082.1| transposase, putative [Microscilla marina ATCC 23134] gi|123990306|gb|EAY29805.1| transposase, putative [Microscilla marina ATCC 23134] Length = 420 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/145 (24%), Positives = 71/145 (48%), Gaps = 14/145 (9%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQS---TLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 ++ C G S+ + L P+++++ ++ + K I +PLLP R IL+ Y Sbjct: 267 FVFQCFTGFAFSDIVDLKPEHLIEQGERTWIIKERVKSSTIAKMPLLPQAR-FILDKYKD 325 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 P L+ + +P+ + G + Y++ + Y+G+ T+H R +FAT + + Sbjct: 326 DPVCLSKGVLIPV--------ITSGNYNTYLKMIAEYVGIDKHLTSHVGRRTFATLVYNA 377 Query: 277 GGDLRSIQSILGHFRLSTTQIYTNV 301 G D ++ + GH + T+IY ++ Sbjct: 378 GTDRSKLKEMTGHTNEAITEIYASL 402 >gi|325696149|gb|EGD38040.1| phage integrase family integrase/recombinase [Streptococcus sanguinis SK160] gi|328946727|gb|EGG40865.1| phage integrase family integrase/recombinase [Streptococcus sanguinis SK1087] Length = 328 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 58/251 (23%), Positives = 110/251 (43%), Gaps = 27/251 (10%) Query: 62 TIRQLSYTEIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117 IR L+ ++R +++ +R++ K+ +++R S SF +L+ +S + + Sbjct: 88 AIRDLTTGDLRTYLAHYQQERKSSKVTIDNMRRIFS---SFFGWLEDEDYILKSPVRRIH 144 Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 +K ++ +++ L D + R+ A++ LL G+R+ E + L Sbjct: 145 KIKTDKTIKETFSDEGLELLRD----------ACDEIRDLAMIDLLASTGMRVGELVRLN 194 Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD---LNLNIQLPLFRGIR 234 ++I + + GKG+ RIV + ++ Y D D L +++ P R + Sbjct: 195 REDINFYERECLVFGKGNSERIVYFDARTKIHLINYLDNRQDDNPALFVSLSFPYNRLLI 254 Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 G GV R +RQ+ L H R + AT + G + +Q +LGH ++ T Sbjct: 255 G-----GVETR-LRQIGEKADLN-KVHPHKFRRTLATRAIDKGMPIEQVQHLLGHVKIDT 307 Query: 295 TQIYTNVNSKN 305 T Y VN N Sbjct: 308 TMHYAMVNQAN 318 >gi|281424449|ref|ZP_06255362.1| putative integrase [Prevotella oris F0302] gi|281401435|gb|EFB32266.1| putative integrase [Prevotella oris F0302] Length = 407 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 17/167 (10%) Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIR 198 L+ ++ + + R + IL L CGLR + LT +NI L+ + KG Sbjct: 240 LIQCHYDNENPNVRRAFILCLY--CGLRFCDVKDLTYKNIDYTNHLLKFEQNKTKGHSAN 297 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 ++P + +L P DLN +I LP + + +++ + G+ Sbjct: 298 SGVIIP-LNDGLLSLIGEAPEDLNSSIFNLPSYESC----------SKSVKRWVKRAGIN 346 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + H RHSFA ++L+NG +++++ S+LGH L T+ YT K Sbjct: 347 KHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393 >gi|189468256|ref|ZP_03017041.1| hypothetical protein BACINT_04652 [Bacteroides intestinalis DSM 17393] gi|189436520|gb|EDV05505.1| hypothetical protein BACINT_04652 [Bacteroides intestinalis DSM 17393] Length = 398 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 74/148 (50%), Gaps = 16/148 (10%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGK---GDKIRIVPLLPSVRKAILEY 213 A L+ Y G+R S+ +++ P NI++ Q T I G ++R+ L K IL Sbjct: 241 AFLFCCYA-GMRYSDFVNMKPDNIVEMHQETWLIYKSIKTGTEVRLPLYLLFSGKGIL-- 297 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 L + NL F +R N V + I + R G+ + HT RH+ AT L Sbjct: 298 -ILNKYQANLQD----FFHLRD---NSNVNKELII-IARLAGVAKKVSFHTARHTNATLL 348 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + NG ++ ++Q +LGH + TTQIYTNV Sbjct: 349 IYNGVNITTVQKLLGHKSVKTTQIYTNV 376 >gi|323973095|gb|EGB68288.1| phage integrase [Escherichia coli TA007] Length = 334 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 22/143 (15%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 + L G R SEA L + I+ ++ T ++ K + R VP+ +V +AI Sbjct: 185 VALLCLSTGARWSEACKLRGEQIVHNRVTF-LETKNGRKRTVPISQAVCEAIKTKETGNL 243 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-GLPLSTTAHTLRHSFATHLLSNG 277 F++ ++ + L+R LP AH LRH+FA+H + NG Sbjct: 244 FEVK--------------------YREFCLMLKRVKPDLPKGQAAHVLRHTFASHFVMNG 283 Query: 278 GDLRSIQSILGHFRLSTTQIYTN 300 G++ ++Q ILGH + T Y + Sbjct: 284 GNIIALQKILGHATIQQTMAYAH 306 >gi|187251397|ref|YP_001875879.1| integrase family protein [Elusimicrobium minutum Pei191] gi|186971557|gb|ACC98542.1| Integrase family protein [Elusimicrobium minutum Pei191] Length = 355 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 13/154 (8%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI------RIVPLLPSV 206 D+ A + L G+R+ E ++ D+ + +Q K + I R +PLL + Sbjct: 190 DSMLKAAIMLGSYAGMRVEEVFQAEWTDVNWDRGVIYVQKKENYIPKDYEDREIPLLKPL 249 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 R+ +L+ N + F+ P P V R+L LG+P T H LR Sbjct: 250 RQYLLKNKGSSK-----NTHIVAFKD-GSSPKTPEVISALFRRLAHELGIPY-TKFHLLR 302 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 H+F + G D SIQ +GH +L TT IY + Sbjct: 303 HNFGSFSAEQGIDPFSIQKAMGHSKLETTMIYIH 336 >gi|34763511|ref|ZP_00144452.1| DNA integration/recombination/invertion protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886817|gb|EAA23949.1| DNA integration/recombination/invertion protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 328 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 72/294 (24%), Positives = 134/294 (45%), Gaps = 38/294 (12%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTI----RQLSYTEIRAFISKRRTQKIGDRS 87 S+ T++ Y + FL F+ + E +I + + + ++ A+I DR Sbjct: 33 SEKTIKDYMFHLKDFLHFV-YDGENDFSISEVIPLMQDIEKEDVEAYI----VHLFEDRQ 87 Query: 88 LKRS-----LSGIKSFLKYLKKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLV 138 LK++ LS +KS K L+ + + + + RN++ N L ++++ + + Sbjct: 88 LKKTSVNTILSALKSLYKELESKGLKNPVKYIKLFKVNRNIE--NILKVSIDDIRKII-- 143 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLR-IQGKGD 195 L E K+ RN ILY L+ G+R E L+L ++ + +D+ + I+ K Sbjct: 144 --GLYKIDSEKKY---RNITILYTLFYTGMRSKELLTLQFKHYLKREDEYFFKLIETKSG 198 Query: 196 KIRIVPLLPSVRKAILEY--YDLCPFDLNLNI--QLPLFRG--IRGKPLNPGVFQRYIRQ 249 K P+ S+ K + EY Y + + L+L + +F + PL+ I+ Sbjct: 199 KDVYKPIHKSLVKKLEEYKKYLISMYSLDLKDLDEKYIFSTSILDNSPLSYRSLNAIIQD 258 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + + +G +S H +RH+ AT L +G D+ I+ LGH T++Y N S Sbjct: 259 MGKLIGKDIS--PHNIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARS 310 >gi|227513195|ref|ZP_03943244.1| phage integrase family site specific recombinase [Lactobacillus buchneri ATCC 11577] gi|227083576|gb|EEI18888.1| phage integrase family site specific recombinase [Lactobacillus buchneri ATCC 11577] Length = 385 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 3/71 (4%) Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 G P+ P + ++++ LG P + H+LRH+ AT LL NG +++ IQ+ LGH R++T Sbjct: 297 GSPVTPNTIKYQCDRIQKELGFPFN--FHSLRHTHATMLLENGANIKDIQARLGHSRIAT 354 Query: 295 T-QIYTNVNSK 304 T Y++V K Sbjct: 355 TMDTYSHVTHK 365 >gi|148381303|ref|YP_001255844.1| site-specific recombinase, phage integrase family [Clostridium botulinum A str. ATCC 3502] gi|153933633|ref|YP_001385681.1| phage integrase family site specific recombinase [Clostridium botulinum A str. ATCC 19397] gi|153937845|ref|YP_001389087.1| phage integrase family site specific recombinase [Clostridium botulinum A str. Hall] gi|148290787|emb|CAL84921.1| putative integrase/recombinase [Clostridium botulinum A str. ATCC 3502] gi|152929677|gb|ABS35177.1| site-specific recombinase, phage integrase family [Clostridium botulinum A str. ATCC 19397] gi|152933759|gb|ABS39258.1| site-specific recombinase, phage integrase family [Clostridium botulinum A str. Hall] Length = 199 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/196 (23%), Positives = 92/196 (46%), Gaps = 12/196 (6%) Query: 122 SNSLPRALNEKQALTLVDNVLL-HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 SN+ + L +++A+ L + ++ SH R+ A+ + Y CGLR SE + + Sbjct: 5 SNNKMKYLTQQEAIRLFNAIIFSDNSHA-----VRDLALFRVAYRCGLRASEISLIKLDD 59 Query: 181 IMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239 D+ L + KG + L + +KA+ Y + + ++ N + LF+ + P++ Sbjct: 60 YNADKGDLYCKRLKGSNNNTIRLDATTKKALDTY--IRDYKISCNSE-TLFKSQKNNPIS 116 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAH--TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 +++ + + + H TL+H+ A HL + D++ +Q LGH +S T+I Sbjct: 117 RQTLDYLMKKYCKIANISDKSKHHFHTLKHTTAVHLAESEMDIKELQWWLGHKSVSNTEI 176 Query: 298 YTNVNSKNGGDWMMEI 313 Y +K M++ Sbjct: 177 YFQFTTKQQEKMYMKL 192 >gi|194436337|ref|ZP_03068439.1| integrase [Escherichia coli 101-1] gi|283787274|ref|YP_003367139.1| phage integrase [Citrobacter rodentium ICC168] gi|194425065|gb|EDX41050.1| integrase [Escherichia coli 101-1] gi|282950728|emb|CBG90404.1| phage integrase [Citrobacter rodentium ICC168] Length = 334 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 66/152 (43%), Gaps = 40/152 (26%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI-------- 210 + L G R SEA L + I+ ++ T ++ K + R VP+ +V +AI Sbjct: 185 VALLCLSTGARWSEACKLRGEQIVHNRVTF-LETKNGRKRTVPISQAVCEAIRTRETGNL 243 Query: 211 --LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 ++Y + C L L R KP LP AH LRH+ Sbjct: 244 FEVKYREFC---LALK---------RVKP-----------------DLPKGQAAHVLRHT 274 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 FA+H + NGG++ ++Q ILGH + T Y + Sbjct: 275 FASHFVMNGGNIIALQKILGHATIQQTMAYAH 306 >gi|146304382|ref|YP_001191698.1| phage integrase family protein [Metallosphaera sedula DSM 5348] gi|145702632|gb|ABP95774.1| phage integrase family protein [Metallosphaera sedula DSM 5348] Length = 286 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 63/257 (24%), Positives = 112/257 (43%), Gaps = 44/257 (17%) Query: 84 GDRSLKRSLSGIKSFLKYLKK--RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 G ++K + I+ FL+++KK R +TT+ I + +L R ++++ + + Sbjct: 28 GQGTIKLYSTAIQDFLQFVKKDPRSVTTQDVIDWIGSLNSRKGRSRVVDKRGRSATIRSY 87 Query: 142 LLHTSHETKWIDA--------------------------------RNSAILYLLYGCGLR 169 ++ KW+ R+ I+ LL GLR Sbjct: 88 VIAVRRFLKWLGVNVKPPVPRIRSPERMALREEDIVALLSACRRLRDKVIVSLLVDTGLR 147 Query: 170 ISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228 SE LSL ++ ++ +R+ + K + RIV S +L Y D + P Sbjct: 148 SSELLSLRRSDVDLERMLIRVRETKNGEERIV-FFTSRTATLLRQYLRKTQDKESD-DAP 205 Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288 LF L+ + I++L R GL H LRH+FAT+ + G L ++Q ++G Sbjct: 206 LFN------LSYQALYKLIKRLGRKTGLTW-LRPHVLRHTFATNAIRRGVPLPAVQRLMG 258 Query: 289 HFRLSTTQIYTNVNSKN 305 H + TTQIYT++ +++ Sbjct: 259 HKDIKTTQIYTHLVTED 275 >gi|284924596|emb|CBG27770.1| site-specific recombinase [Escherichia coli] Length = 268 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 52/226 (23%) Query: 121 KSNSLPRALNEKQALTLVDNVLLHT-------SHETKWI-----DARNSAILYLLYGCGL 168 + SLP A++ AL L ++H + E + D R +L L+ G Sbjct: 22 QPASLPVAIDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVPDLRRKMLLATLWNTGA 81 Query: 169 RISEAL-------SLTPQNIMDDQSTL--------RIQGK---GDKI-RIVPLLPSVRKA 209 RI+EAL SLTP +TL R G+ G + R+VPL S + Sbjct: 82 RINEALALTRGDFSLTPPYPFVQLATLKQRTEKAARTAGRTPAGQQTHRLVPLSDSWYVS 141 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLGLPLSTTA----- 262 L+ + +++PL R + G+ +++ R +R ++G ++T A Sbjct: 142 QLQ-------TMVATLKIPLERRNKRTGRTEKARIWEVTDRTVRIWIGEAVATAAADGVT 194 Query: 263 -------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 195 FSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240 >gi|218704195|ref|YP_002411714.1| Integrase from bacteriophage origin [Escherichia coli UMN026] gi|218431292|emb|CAR12170.1| Integrase from bacteriophage origin [Escherichia coli UMN026] Length = 351 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 24/144 (16%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 ++ + G R +EA +L I + T I+ KG + R +PL Sbjct: 201 VVKICLATGARWNEAATLKSSQIAGGKVTF-IKTKGKRNRTIPL---------------- 243 Query: 219 FDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSN 276 D L +LP +G + KP + + L R + LP H LRH+FA+H + N Sbjct: 244 -DDELLAELPETKGALFPKP----CYNAFRSALERAGIELPAGQLTHVLRHTFASHFMMN 298 Query: 277 GGDLRSIQSILGHFRLSTTQIYTN 300 GG++ +Q ILGH ++ T Y + Sbjct: 299 GGNILVLQKILGHADITMTMRYAH 322 >gi|154495043|ref|ZP_02034048.1| hypothetical protein PARMER_04089 [Parabacteroides merdae ATCC 43184] gi|154085593|gb|EDN84638.1| hypothetical protein PARMER_04089 [Parabacteroides merdae ATCC 43184] Length = 392 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 54/166 (32%) Query: 162 LLYGC--GLRISEALSLTPQN--IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 L+ C GLR S+ +++ P N ++DD+ L + SV+ Sbjct: 240 FLFSCYTGLRFSDIVNIRPDNFHLIDDKLWL-------------VYSSVKT--------- 277 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-GLPLSTTA-------------- 262 ++N++LPLF GK L V++RY ++ R L G+ +S + Sbjct: 278 ----DVNVRLPLFLLFDGKAL--AVYERYCKRYSRTLFGVSVSANSNVNKQLKRICRLAE 331 Query: 263 -------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 H RH+ AT LL NG ++ ++Q +LGH + TT+IY+++ Sbjct: 332 IDKRLSFHMARHTNATLLLYNGANITTVQKLLGHKSVRTTEIYSDI 377 >gi|317505107|ref|ZP_07963052.1| integrase [Prevotella salivae DSM 15606] gi|315663771|gb|EFV03493.1| integrase [Prevotella salivae DSM 15606] Length = 391 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 17/157 (10%) Query: 162 LLYGC--GLRISEALSLTPQNI--MD-DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 L+ C GL + +LT NI MD Q + + K D + + LL + K I++ Y Sbjct: 228 FLFSCFTGLAYVDVANLTADNIITMDGKQWIVTARKKTDTLSHILLL-DIPKMIIKKYAG 286 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 C + L +P+ R Y++++ G+ + T H RH+FAT +L+ Sbjct: 287 CAKNGRL---IPILSNQR--------MNSYLKEIADVCGINKNLTFHMARHTFATMMLTK 335 Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G + S+ +LGH ++TTQ+Y + +K + M+ + Sbjct: 336 GVPVESVSKMLGHSSITTTQLYARITNKKIENDMLAV 372 >gi|228990730|ref|ZP_04150695.1| Tn554-related, transposase A [Bacillus pseudomycoides DSM 12442] gi|228769256|gb|EEM17854.1| Tn554-related, transposase A [Bacillus pseudomycoides DSM 12442] Length = 379 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 58/215 (26%), Positives = 101/215 (46%), Gaps = 31/215 (14%) Query: 96 KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155 KSFL ++ + K L+MRN+ K PR + + V VL T+ + R Sbjct: 148 KSFLHHINQDK-------LSMRNVLKVKE-PRKRVQTLSKEQVKQVLAATT------NIR 193 Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQ-------GKGDKIRIVPLLPSVR 207 ++ ++ LL+ GLRI E LSL ++ Q RI+ G K++ V Sbjct: 194 DTFLIQLLFETGLRIGETLSLFLEDFKFSHQKGHRIRLTDRGELENGAKLKTGEREIFVS 253 Query: 208 KAILEYYDLCPFDL--NLNIQLP-LFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLST 260 + +++ YD +D+ L+++ +F +RGK P+ G + ++LR+ G+ + Sbjct: 254 QDLMDLYDDYMYDVIDELDVETNFVFVKLRGKNMGRPMTYGDVEALFKRLRQKTGIDVH- 312 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 H RH+ AT D++ +Q LGH ++ TT Sbjct: 313 -PHLFRHTHATMYYQETKDIKQVQERLGHSQIQTT 346 >gi|149921212|ref|ZP_01909669.1| Phage integrase [Plesiocystis pacifica SIR-1] gi|149817983|gb|EDM77443.1| Phage integrase [Plesiocystis pacifica SIR-1] Length = 401 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 23/158 (14%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQ----------GKGDKIRIVPLLPSVR 207 I+ L+ G+R E +L +I + T+R+Q K K R +PL P + Sbjct: 209 IVLLMGDAGMRQGEIRALHWSDIRKHPEPTIRVQRTRFKADEYAPKSKKGRSIPLSPRLV 268 Query: 208 KAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 A+ L CP ++ G+PL P + + I + R G+ + +H L Sbjct: 269 AALEALPRRRGCPHVIHEA----------GEPLTPKLVRGRIVRCERAAGMAETGLSHKL 318 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 RH+FAT L++ G L I+ +LGH L TTQ Y + S Sbjct: 319 RHTFATRLVAAGVPLLVIKELLGHADLRTTQRYLHTVS 356 >gi|77412574|ref|ZP_00788864.1| prophage LambdaSa2, site-specific recombinase, phage integrase family [Streptococcus agalactiae CJB111] gi|77161376|gb|EAO72397.1| prophage LambdaSa2, site-specific recombinase, phage integrase family [Streptococcus agalactiae CJB111] Length = 263 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 34/166 (20%) Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--------GKG-- 194 TS E K+ ++ +YL+ GLR SEA+ LT +I D+ L + KG Sbjct: 92 TSKEVKY---KSHFCIYLIATTGLRFSEAMGLTWSDIDRDELLLHVNKTYKVFGSDKGFQ 148 Query: 195 -----DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 IR VP+ + K + +Y L + +F GI +N + Sbjct: 149 PTKNKHSIRYVPINNTTIKLLDQY------RLLFKTETRIFEGISNTAVN--------KT 194 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 L++ +G + H+LRH++ +HL+S G DL +I I+GH L+ T Sbjct: 195 LKKLVGRNIHI--HSLRHTYVSHLISEGIDLFAISKIVGHKDLNIT 238 >gi|253565833|ref|ZP_04843287.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|251944937|gb|EES85375.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] Length = 408 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 75/150 (50%), Gaps = 15/150 (10%) Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQS----TLRIQGKGDKIRIVPLLPSVRKAILE 212 ++ +Y GL + +L P++I +D + ++ + K + + +PLL S+ K ILE Sbjct: 251 DVFIFCVYT-GLAFIDVYNLRPEHISEDSNGNLWIVKPREKTNNLCNIPLL-SISKQILE 308 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 Y P+ ++ LP+ P N + Y++++ G+ + T HT RHSFA+ Sbjct: 309 KYKDNPYCMDKGTLLPV-------PCNQKM-NSYLKEIADLCGIKKNLTTHTARHSFASV 360 Query: 273 L-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + L+N L ++ +LGH TQ Y V Sbjct: 361 IALANNVSLPNVAKMLGHSSTRMTQHYAKV 390 >gi|323184105|gb|EFZ69483.1| resolvase [Escherichia coli 1357] Length = 226 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 40/182 (21%) Query: 153 DARNSAILYLLYGCGLRISEALSLT-------PQNIMDDQSTL------------RIQGK 193 D R +L L+ G RI+EAL+LT P +TL R+ Sbjct: 24 DLRRKMLLATLWNTGARINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAGRMPAG 83 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLR 251 R+VPL S + L+ + +++P+ R R G+ +++ R +R Sbjct: 84 QQTHRLVPLSDSWYVSQLQ-------TMVATLKIPMERRNRRTGRTEKARIWEVTDRTVR 136 Query: 252 RYLG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 ++G + T HT RHS+A H+L G L+ +QS++GH +S+T++YT Sbjct: 137 TWIGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYT 196 Query: 300 NV 301 V Sbjct: 197 KV 198 >gi|317123939|ref|YP_004098051.1| integrase [Intrasporangium calvum DSM 43043] gi|317126599|ref|YP_004100711.1| integrase [Intrasporangium calvum DSM 43043] gi|315588027|gb|ADU47324.1| integrase family protein [Intrasporangium calvum DSM 43043] gi|315590687|gb|ADU49984.1| integrase family protein [Intrasporangium calvum DSM 43043] Length = 366 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/175 (32%), Positives = 78/175 (44%), Gaps = 25/175 (14%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDD---QSTLRIQ------GKGDKIRIVPLLP 204 AR+ L GLRI+E + L + D L ++ G+G KIRIVP + Sbjct: 169 ARDYLAASLWRRVGLRINETVMLDIGDWHPDLGAHGKLHVRHGKGSRGRGAKIRIVPAID 228 Query: 205 SVRKAILEYYDLCPF-----DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG---- 255 V A+LE++ L D + PL R + + LR LG Sbjct: 229 EV-DALLEWW-LTDVRHQFGDDADDPSAPLLPSERRDAMTGHATRIGAEALRAGLGHAVQ 286 Query: 256 --LPLST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 LP T T H LRH A+HL G L++IQ ++GH LSTT Y +V+S + Sbjct: 287 AWLPTWTGRLTPHVLRHYCASHLYQQGMSLKAIQELMGHSWLSTTTQYIHVHSTH 341 >gi|29349430|ref|NP_812933.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|29341339|gb|AAO79127.1| integrase [Bacteroides thetaiotaomicron VPI-5482] Length = 409 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 96/192 (50%), Gaps = 26/192 (13%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLT 177 KK+ + PRAL+ +++ + +V + ++ I AR+ L+GC G+ ++ +S+T Sbjct: 217 KKTETTPRALS-RESFEKIRDVEI-PAYRKSHILARD----MFLFGCYTGVCYADVVSIT 270 Query: 178 PQNIMDDQST---LRIQGKGDKIR-IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233 +N+ D+ L+ + K +++R V LLP I +Y+ + + PL Sbjct: 271 HENLYTDEDGALWLKYRRKKNELRACVKLLPEAIALIEKYHSE-----DRDTLFPL---- 321 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRL 292 L+ +R+++ L G+ H RHSFA+ + L G + +I +LGH + Sbjct: 322 ----LHWSNLRRHMKALAALAGIKDDLCYHQARHSFASLITLEAGVPIETISRMLGHSDI 377 Query: 293 STTQIYTNVNSK 304 STTQ+Y V+ K Sbjct: 378 STTQVYARVSPK 389 >gi|261879822|ref|ZP_06006249.1| integrase [Prevotella bergensis DSM 17361] gi|270333480|gb|EFA44266.1| integrase [Prevotella bergensis DSM 17361] Length = 407 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 14/159 (8%) Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 ++ C GL + +LTP NI +DD+ + + + + LL + K I+ Y Sbjct: 249 FIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPKNIIAKYSHK 308 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 + LF + + N Y++++ G+ + T H RH+FAT LS G Sbjct: 309 TYR-----DGKLFPILTNQKTNA-----YLKEIADLCGIKKNLTFHLARHTFATMSLSKG 358 Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + S+ +LGH + TTQIY + +K M ++ D+ Sbjct: 359 VPMESVSKMLGHTNIKTTQIYARITNKKVEHDMEQLADK 397 >gi|209518165|ref|ZP_03266993.1| integrase family protein [Burkholderia sp. H160] gi|209501372|gb|EEA01400.1| integrase family protein [Burkholderia sp. H160] Length = 570 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 76/315 (24%), Positives = 124/315 (39%), Gaps = 58/315 (18%) Query: 27 IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 +ERG LS LT + D + FL + + +R + + R F + Sbjct: 257 VERGRALSSLTTE----DAIAYRAFLRHPSPRARWVGPVRPRTSPDWRPF-----NGSLS 307 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNSL--PRALNEKQALTLVDN 140 RS+ +LS + + ++L +++ + + +R N L A +E + LV Sbjct: 308 ARSVAHALSILGALFRWLIEQRYVLANPFAGVKVREASGGNVLDTSHAFSEGE-WALVRT 366 Query: 141 VLLHTSHETKWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDD---QSTLRIQGKG 194 + W + +LL Y GLR SE + T +I D LR+ GKG Sbjct: 367 IADGLEWSYDWSAPAAQRVRFLLDFGYATGLRASELVGATLGHIETDARGDHWLRVTGKG 426 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ---------- 244 K+ V L P A+ Y +LP+ +R +P P + Sbjct: 427 KKLARVALPPLAWDALAHYL--------AERELPIA-PVRWRPETPVIGSLEADSEVAIS 477 Query: 245 --RYIRQLRRYLGL----------PLS-----TTAHTLRHSFATHLLSNGGDLRSIQSIL 287 R LRR+ L PL+ + H +RH+ ATH L G +L +++ L Sbjct: 478 SVRLWAVLRRFFLLAAQAIEADHPPLAEKLRRASPHWMRHTHATHALGRGAELTTVRDNL 537 Query: 288 GHFRLSTTQIYTNVN 302 H +STT IY + + Sbjct: 538 RHASVSTTSIYLHSD 552 >gi|301310050|ref|ZP_07215989.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3] gi|325280034|ref|YP_004252576.1| integrase family protein [Odoribacter splanchnicus DSM 20712] gi|300831624|gb|EFK62255.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3] gi|324311843|gb|ADY32396.1| integrase family protein [Odoribacter splanchnicus DSM 20712] Length = 406 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/170 (24%), Positives = 81/170 (47%), Gaps = 17/170 (10%) Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI 199 ++L K ++ ++ ++ GL S+ L+P++++ D++ L I+ K +I Sbjct: 232 IILAKEFTIKRVEQVRDVFIFCIFT-GLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKI 290 Query: 200 ---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +P+LP + +Y D+ L LP+ R Y++++ G+ Sbjct: 291 MCNIPVLPVAASILDKYKDVAECTGKL---LPVLCNQR--------MNSYLKEIADVCGI 339 Query: 257 PLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + + HT RHS+AT + L+NG + ++ +LGH S T+ Y V +N Sbjct: 340 HKNLSTHTARHSYATSVCLANGVSMENVAKMLGHADTSVTKHYARVLDQN 389 >gi|218282511|ref|ZP_03488761.1| hypothetical protein EUBIFOR_01343 [Eubacterium biforme DSM 3989] gi|218216498|gb|EEC90036.1| hypothetical protein EUBIFOR_01343 [Eubacterium biforme DSM 3989] Length = 343 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 71/305 (23%), Positives = 131/305 (42%), Gaps = 34/305 (11%) Query: 5 NLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64 ++ E + EL+ + ++ EIE G S+ T + Y + + + + + Sbjct: 59 HICEFTNIELINK---FIAAKEIE-GCSERTTKYY---------YATLIKMDSMITKNVT 105 Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK----SFLKYLKKRKITTESNILNMRNLK 120 L+ ++R ++++ QKI + S K S+ I+ SF +L++ +S + + +K Sbjct: 106 HLTTDDLRMYLTE--YQKINNCS-KASIDNIRRNLSSFFSWLEEENYILKSPMKRIHKIK 162 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 + +++ L DN + R+ AI+ LL G+R+ E + L + Sbjct: 163 TDKVIKETYSDETLELLRDN----------CNNLRDLAIIDLLSSTGMRVGELVRLNIND 212 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240 I + + GKG+K R V + + Y + D N+ L + LN Sbjct: 213 IDFENRECVVFGKGNKERPVYFDARTKIHLRNYINSRNDD---NVALFVSLDAPHDRLNI 269 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + +RQL R LG+ H R + AT + G + +QS+LGH ++ TT Y Sbjct: 270 SGVEIRLRQLGRKLGIN-KVHPHKFRRTVATKAIDKGMPIEQVQSLLGHSQIDTTMHYAM 328 Query: 301 VNSKN 305 VN N Sbjct: 329 VNQNN 333 >gi|317481199|ref|ZP_07940273.1| phage integrase [Bacteroides sp. 4_1_36] gi|316902634|gb|EFV24514.1| phage integrase [Bacteroides sp. 4_1_36] Length = 396 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 70/144 (48%), Gaps = 8/144 (5%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 A L+ Y G+R S+ +SL+P NI++ + + K K LP + E L Sbjct: 237 AFLFCCYA-GMRYSDFISLSPDNIVEIRQETWLIYKSIKTSTEVRLPLY--LLFEGKGLV 293 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 D L F +R N V + I + R GL + HT RH+ AT L+ NG Sbjct: 294 ILD-KYRDDLQSFFHLRD---NSNVNKDLI-VISRLAGLSKKISFHTARHTNATLLIYNG 348 Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301 ++ ++Q +LGH + TTQ+YTNV Sbjct: 349 VNITTVQKLLGHKSVKTTQVYTNV 372 >gi|294634567|ref|ZP_06713102.1| site-specific recombinase, phage integrase family [Edwardsiella tarda ATCC 23685] gi|291092081|gb|EFE24642.1| site-specific recombinase, phage integrase family [Edwardsiella tarda ATCC 23685] Length = 345 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 67/155 (43%), Gaps = 29/155 (18%) Query: 153 DARNSA------ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 + RNS+ I+ + G R SEA +L I + T I+ KG + R +PL Sbjct: 189 ECRNSSASDLETIVKICLATGARWSEAENLRRSQISAGKVTF-IKTKGKRNRTIPL---- 243 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTL 265 DL L +LP G P + + L R + LP H L Sbjct: 244 -------------DLKLIGELPKKNGALFTP----CYYAFRNALERAGIDLPAGQLTHVL 286 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 RH+FA+H + NGG++ +Q ILGH + T Y + Sbjct: 287 RHTFASHFMMNGGNILVLQKILGHTDIKMTMRYAH 321 >gi|283785697|ref|YP_003365562.1| phage integrase [Citrobacter rodentium ICC168] gi|282949151|emb|CBG88759.1| putative phage integrase [Citrobacter rodentium ICC168] Length = 326 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 22/153 (14%) Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 ++++ N + L G R +E +L + + + T ++ K K R VP+ ++ + Sbjct: 175 EFLEGDNRRVALLCLSTGARWNEGSTLRAEQVNHGRVTF-LKTKNGKKRTVPISEALERE 233 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-GLPLSTTAHTLRHS 268 I FD+N + ++ QLRR LP + H LRH+ Sbjct: 234 IKTCETGPLFDVN--------------------YAQFREQLRRVKPDLPRGQSTHVLRHT 273 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 FA+ + NGG++ ++Q I+GH + T +Y ++ Sbjct: 274 FASWFMMNGGNIIALQQIMGHASIKQTMVYAHL 306 >gi|163814364|ref|ZP_02205753.1| hypothetical protein COPEUT_00515 [Coprococcus eutactus ATCC 27759] gi|158449999|gb|EDP26994.1| hypothetical protein COPEUT_00515 [Coprococcus eutactus ATCC 27759] Length = 323 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 64/280 (22%), Positives = 124/280 (44%), Gaps = 30/280 (10%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQ----KIGD 85 G S T++ Y C+ + L + I I I+ ++ +R ++ + +T K+ Sbjct: 60 GCSDKTIRYYRCNIEKML--------DTINIPVIK-ITTEMLRKYLVEYQTTNNCGKVTI 110 Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 +++RSLS +F +L++ +S + + +K + + + +++ L DN Sbjct: 111 DNIRRSLS---TFFSWLEEEDYIIKSPMKRIHKVKTAVIVKDTIPDEKIEILRDNCN--- 164 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 + R+ A++ L G+R+ E + L +I + + GKGDK R Sbjct: 165 -------NLRDRAMIDFLLSTGIRVGELVRLNIDDIDFSERECVVYGKGDKERKAYFDAK 217 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + +L Y + D N+ + + L + + GV R +R++ + LG+ H Sbjct: 218 TKIHLLNYIE-SRTDNNIALFVSLNKP-HSRLTESGVELR-LREMGKKLGVE-KVHPHKF 273 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 R + AT + G + +Q ILGH ++ TT Y VN N Sbjct: 274 RRTMATRAIEKGMPIEQVQKILGHEQIDTTLRYAMVNQNN 313 >gi|327490261|gb|EGF22049.1| phage integrase family integrase/recombinase [Streptococcus sanguinis SK1058] Length = 328 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 59/251 (23%), Positives = 112/251 (44%), Gaps = 27/251 (10%) Query: 62 TIRQLSYTEIRAFISK----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117 +IR L+ +++R ++++ R++ K+ +++R S SF +L+ +S + + Sbjct: 88 SIRDLTTSDLRTYLARYQQERKSSKVTIDNMRRIFS---SFFGWLEDEDYILKSPVRRIH 144 Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 +K ++ +++ L D R+ A++ LL G+R+ E + L Sbjct: 145 KIKTDKTIKETFSDEGLELLRD----------ACDKIRDLAMIDLLASTGMRVGELVRLN 194 Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD---LNLNIQLPLFRGIR 234 ++I + + GKG+ RIV + ++ Y D D L +++ P R + Sbjct: 195 REDINFYERECVVFGKGNSERIVYFDARTKIHLINYLDSRQDDNPALFVSLSSPHDRLLI 254 Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 G GV R +RQL + L H R + AT + G + +Q +LGH ++ T Sbjct: 255 G-----GVETR-LRQLGQKADLN-KVHPHKFRRTLATRAIDKGMPIEQVQHLLGHVKIDT 307 Query: 295 TQIYTNVNSKN 305 T Y VN N Sbjct: 308 TMHYAMVNQAN 318 >gi|169636475|ref|YP_001716016.1| putative integrase/recombinase XerD [Geobacillus stearothermophilus] gi|169403015|emb|CAP08226.1| putative integrase/recombinase XerD [Geobacillus stearothermophilus] Length = 304 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 72/306 (23%), Positives = 138/306 (45%), Gaps = 41/306 (13%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 +L E +LQ E+G S T+ SY D F L + +T+ IR+ I+ Sbjct: 1 MLNEYVTYLQ----EKGASPNTIISYTNDLNIFFNDLHIRPGDYVTMADIRKW----IQQ 52 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 ++ + + ++ R L+ ++SF + + ++ + ++++LK ++ + ++ Sbjct: 53 MLNPAEGKPLAISTINRRLNALRSFYAWAVEHYKLEQNPMKDIQDLKSADE-----DNEK 107 Query: 134 ALTLVDNV---LLHTSHE----TKWIDA-----RNSAILYLLYGCGLRISEALSLTPQNI 181 + L + LLH + ++ +D R+ A++YLL GLR+ E +L ++ Sbjct: 108 IMWLTEEEFEDLLHRMRKKPVRSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDL 167 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN------IQLP-LFRGIR 234 + +RI GKG K+R VP + ++ A LE D F + + P +F R Sbjct: 168 DLEMKRIRIVGKGMKVRTVP-ISNILLAELE--DWLKFRAEMAKKKSHVAESPYVFYSQR 224 Query: 235 GKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRL 292 P R I+++ LP T H RH+F +L + D+ ++ + GH + Sbjct: 225 S----PKFSVRGIQRMIESYSLPNKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNI 280 Query: 293 STTQIY 298 +TT Y Sbjct: 281 ATTSRY 286 >gi|330817073|ref|YP_004360778.1| integrase family protein [Burkholderia gladioli BSR3] gi|327369466|gb|AEA60822.1| integrase family protein [Burkholderia gladioli BSR3] Length = 578 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 77/305 (25%), Positives = 124/305 (40%), Gaps = 46/305 (15%) Query: 27 IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 +ERG LS LT + D + FL + IR + R F T + Sbjct: 267 VERGRALSSLTTE----DALAYRAFLRRPAPAERWTGPIRPRRAADWRPF-----TGALS 317 Query: 85 DRSLKRSLSGIKSFLKYLKKRK--ITTESNILNMRNLKKSNSLPRAL----NEKQALTLV 138 RS +LS + + ++L +++ + + + +R ++ +L + E Q L + Sbjct: 318 ARSAAHALSVLGALFRWLVEQRYLLANPFSGVKVRGGTRAAALDSSRVFSDGEWQILRAI 377 Query: 139 DNVLLHTSHETKWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDDQSTLR---IQG 192 + L W A + +LL Y GLR SE + L I D R + G Sbjct: 378 ADGL---EWSLGWEPAAAQRLRFLLDFSYATGLRASELVGLRLGAIRSDAREDRWIHLVG 434 Query: 193 KGDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ-RYIR 248 KG K V L P +A+ Y L LP+ G+ G+ G+ R + Sbjct: 435 KGGKAARVALPPLAWQALTRYALERGLSAVPTQWRPDLPVIGGL-GEDGAAGIGGVRLWK 493 Query: 249 QLRRYLG----------LPLS-----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 L+R+ G PL+ + H +RH+ ATH L+ G +L +++ L H +S Sbjct: 494 VLKRFFGQVADMLAAEHPPLADKLRRASPHWMRHTHATHALARGAELTTVRDNLRHASIS 553 Query: 294 TTQIY 298 TT IY Sbjct: 554 TTSIY 558 >gi|294782426|ref|ZP_06747752.1| integrase/recombinase [Fusobacterium sp. 1_1_41FAA] gi|294481067|gb|EFG28842.1| integrase/recombinase [Fusobacterium sp. 1_1_41FAA] Length = 328 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 72/295 (24%), Positives = 129/295 (43%), Gaps = 40/295 (13%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTI----RQLSYTEIRAFISKRRTQKIGDRS 87 S+ T++ Y + FL F+ + E +I + + + ++ A+I DR Sbjct: 33 SEKTVKDYMFHLKDFLHFV-YEGENDFSISEVIPLMQDIEKEDVEAYI----VHLFEDRK 87 Query: 88 LKRS-----LSGIKSFLKYLKKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLV 138 LK++ LS +KS K L+ + + + RN++ N L ++++ + + Sbjct: 88 LKKTSVNTILSALKSLYKELESNGLKNPVKYIKLFKVNRNIE--NVLKVSIDDIRKII-- 143 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLR-IQGKGD 195 L E K+ RN ILY L+ G+R E L+L ++ + +D+ + +Q K Sbjct: 144 --GLYKIDSEKKY---RNITILYTLFYTGMRSKELLTLQFKHFLRREDEYFFKLVQTKSG 198 Query: 196 KIRIVPLLPSVRKAILEY-------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 K P+ S+ K + EY Y L DL+ + + PL+ I+ Sbjct: 199 KDVYKPIHKSLVKKLEEYRSYLMNMYSLDSKDLDEHYIFAT-SVLNNSPLSYRSLNVIIQ 257 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + + + +S H +RH+ AT L NG D+ I+ LGH T++Y N S Sbjct: 258 DMGKLIEKDIS--PHNIRHAIATELSLNGADILEIRDFLGHSDTKVTEVYINARS 310 >gi|168184027|ref|ZP_02618691.1| tyrosine recombinase XerC [Clostridium botulinum Bf] gi|237794099|ref|YP_002861651.1| tyrosine recombinase XerC [Clostridium botulinum Ba4 str. 657] gi|182672827|gb|EDT84788.1| tyrosine recombinase XerC [Clostridium botulinum Bf] gi|229261398|gb|ACQ52431.1| tyrosine recombinase XerC [Clostridium botulinum Ba4 str. 657] Length = 138 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 65/120 (54%), Gaps = 6/120 (5%) Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 S + + GKG+K R + L P+ +KAI ++ + ++N N LF + Q Sbjct: 4 SFIYVVGKGNKKREIFLTPAAKKAINDWLHIRNSINVNTN---ALFISRNSNRITTRAIQ 60 Query: 245 RYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNG-GDLRSIQSILGHFRLSTTQIYTNVN 302 +++ GL S + H LRH+ AT + G D+RS+Q ILGH ++TT+IYT+++ Sbjct: 61 NIVKKYVITSGLDTKSISTHKLRHTAATLMYKYGRVDIRSLQQILGHESVATTEIYTHID 120 >gi|160887647|ref|ZP_02068650.1| hypothetical protein BACUNI_00047 [Bacteroides uniformis ATCC 8492] gi|270294572|ref|ZP_06200774.1| conserved hypothetical protein [Bacteroides sp. D20] gi|156862858|gb|EDO56289.1| hypothetical protein BACUNI_00047 [Bacteroides uniformis ATCC 8492] gi|270276039|gb|EFA21899.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 396 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 70/144 (48%), Gaps = 8/144 (5%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 A L+ Y G+R S+ +SL+P NI++ + + K K LP + E L Sbjct: 237 AFLFCCYA-GMRYSDFISLSPDNIVEIRQETWLIYKSIKTSTEVRLPLY--LLFEGKGLV 293 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 D L F +R N V + I + R GL + HT RH+ AT L+ NG Sbjct: 294 ILD-KYRDDLQSFFHLRD---NSNVNKDLI-VISRLAGLSKKISFHTARHTNATLLIYNG 348 Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301 ++ ++Q +LGH + TTQ+YTNV Sbjct: 349 VNITTVQKLLGHKSVKTTQVYTNV 372 >gi|158520653|ref|YP_001528523.1| integrase family protein [Desulfococcus oleovorans Hxd3] gi|158509479|gb|ABW66446.1| integrase family protein [Desulfococcus oleovorans Hxd3] Length = 397 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 14/182 (7%) Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 PR N+K D + +W D ++ + L GLR E LT Q++ D+ Sbjct: 201 PRLNNQKTGFLTDDELTRLLDVLEQWPDRMSAGFIAFLLHTGLRRGELFRLTWQDVNMDR 260 Query: 186 STLRIQG-KGDKIRIVPLLPSVRKAI--LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242 TL ++ KG + ++PL A+ L PF +F G G Sbjct: 261 QTLTVRDPKGGRDTVLPLSEKAIDALNSLPREHETPF---------VFYGRNGA--QRAD 309 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 F+ ++++ LP H LRH FA+ L+S G +L ++Q++L H + TQ Y +++ Sbjct: 310 FRHPWYRIKQAAALPEGFRLHDLRHHFASALVSAGTNLYTVQALLTHKSAAMTQRYAHLS 369 Query: 303 SK 304 + Sbjct: 370 DQ 371 >gi|323175010|gb|EFZ60625.1| integrase [Escherichia coli LT-68] Length = 330 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 62/239 (25%), Positives = 102/239 (42%), Gaps = 46/239 (19%) Query: 72 RAFISKRRTQKIG----DRSLKRSLSGIKSFLKYLKKRKITTESN-ILNMRNLKKSNSLP 126 R F+ + R++K+ S+ R L + + L + ++ +N + +R LK N+ Sbjct: 103 RKFMLEYRSEKLQAGLMPSSINRDLCVLSTMFTVLIEAEVFHNANPVRGIRKLKVQNTEM 162 Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 L++ + L++ + DAR AIL L G R EA L ++I+ ++ Sbjct: 163 AFLSDDEIEQLLERLEG---------DARRVAILCL--STGARWREASELRGEHIVGNRV 211 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 T K K R VP+ SV +PL + R L +Q Sbjct: 212 TF-FNTKNGKSRSVPVADSV--------------------VPLIKTRRTGLL----YQVD 246 Query: 247 IRQLRRYL-----GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + R L LP H +RH+FATH + NGG++ ++Q ILGH + T Y + Sbjct: 247 YLEFREILQEVKPDLPKGQATHVMRHTFATHFMMNGGNIVTLQRILGHATIQQTMTYAH 305 >gi|227355962|ref|ZP_03840354.1| integrase [Proteus mirabilis ATCC 29906] gi|227163950|gb|EEI48852.1| integrase [Proteus mirabilis ATCC 29906] Length = 329 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/231 (24%), Positives = 99/231 (42%), Gaps = 29/231 (12%) Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL-NMRNLKKSNSLPRALNEKQALTL 137 R + + R+ L+ ++ L + + N L N+R+ + S L+++Q + L Sbjct: 114 RIKSVAPRTTNLELAYFRAMFNELHRLGEWKDDNPLKNIRSFRTDESEMAFLSDEQIIQL 173 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 ++ ++K D S I+ + G R SEA LT + + T + KG + Sbjct: 174 LEEC-----DKSKAKDL--SIIVKIALSTGARWSEAEGLTSSQVTPYKITF-TKIKGKRN 225 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 R VP+ + YD P RG P + R + LP Sbjct: 226 RTVPISKVL-------YDEIP-------------KKRGALFTPCYSAFRMAMKRTGIELP 265 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 ++H LRH+FA+H + NGG++ +Q ILGH + T Y++ + ++ D Sbjct: 266 HRQSSHVLRHTFASHFMMNGGNILVLQRILGHTDIKMTMRYSHFSPEHLED 316 >gi|218892832|ref|YP_002441701.1| putative bacteriophage integrase [Pseudomonas aeruginosa LESB58] gi|218773060|emb|CAW28872.1| putative bacteriophage integrase [Pseudomonas aeruginosa LESB58] Length = 338 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 21/139 (15%) Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224 G R SEA LT ++ D S + K ++R VP+ ++ + +Y+ Sbjct: 194 ATGARWSEAQGLT-LPMVRDGSVVFSNTKSKRVRSVPISTDLQARLEKYFA--------- 243 Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283 G+ P + + R ++R + LP H LRH+FA+H + NGG++ ++ Sbjct: 244 ----------GRNRFPSCREAFARMVKRCGIVLPRGQCTHVLRHTFASHFMMNGGNILAL 293 Query: 284 QSILGHFRLSTTQIYTNVN 302 + ILGH L+ T Y +++ Sbjct: 294 KEILGHSSLNMTMRYAHLS 312 >gi|17549123|ref|NP_522463.1| putative integrase/recombinase protein [Ralstonia solanacearum GMI1000] gi|17431374|emb|CAD18053.1| putative integrase/recombinase protein [Ralstonia solanacearum GMI1000] Length = 566 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 77/306 (25%), Positives = 126/306 (41%), Gaps = 48/306 (15%) Query: 27 IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 IERG LS LT + D + FL + + + R + + R F T + Sbjct: 256 IERGRPLSSLTTE----DAIAYRGFLRRPSPHERWVGPARPRASADWRPF-----TDGLS 306 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 RS+ SLS + + ++L +++ + ++ + AL+ A + + L+ Sbjct: 307 ARSIAYSLSVLGAMFRWLIQQRYVLANPFAGIK--VRGGGRTAALDASHAFSEGEWALVR 364 Query: 145 T-SHETKWIDARNSA-------ILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGK 193 T + +W +A +L Y GLR SE ++ I D+ + L + GK Sbjct: 365 TLADGLEWSYGWEAAAAQRLRFVLDFAYATGLRASELITARLGGIETDRQSDHWLSLIGK 424 Query: 194 GDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPG--------- 241 G + V L P R A+ Y L N Q PL G G L+PG Sbjct: 425 GGRAGKVALPPLARTALDRYLVERGLPVTQARWNPQTPLI-GALG--LDPGGGITGSRLW 481 Query: 242 -VFQRYIRQL-----RRYLGLP---LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 V +R+ R R + L + H +RH+ A+H L+ G +L +++ L H + Sbjct: 482 SVMRRFFRVAADLIERDHTALAEKLRKASPHWMRHTHASHALARGAELTTVRDNLRHASI 541 Query: 293 STTQIY 298 STT IY Sbjct: 542 STTSIY 547 >gi|332139698|ref|YP_004425436.1| site-specific recombinase, phage integrase family protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327549720|gb|AEA96438.1| site-specific recombinase, phage integrase family protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 297 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/230 (23%), Positives = 109/230 (47%), Gaps = 10/230 (4%) Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP---RALNEKQALT 136 TQ RS+ R++ I+S +K + E + +R + K N + L+ +Q Sbjct: 61 TQGWSARSINRAMIAIRSIVKIAVLSGLVPEMQSIQLRAISKVNHGKHDGKPLSTEQ--- 117 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 V+ +L+ + + RN A++ L G GLR SE ++L ++ ++ + + +GKG+K Sbjct: 118 -VNKLLIKLQRDKSVLGIRNYALISTLLGTGLRRSELVALLVEDFIEGTALIVRKGKGNK 176 Query: 197 IRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYL 254 R V L + A+ ++ L + +L +++ I+ L+ ++ + Sbjct: 177 SRTVHLPAWTQLALNQWLTLRSKSNGHLFVRVAKGGNIKHNTALSSCSIYSLTKKSLASI 236 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 G+ + H LR +F T LL D+ +++ + GH +STT +Y + K Sbjct: 237 GIE-GVSPHDLRRTFITRLLEQNVDINTVRQMAGHEDISTTIMYDKRDEK 285 >gi|322832185|ref|YP_004212212.1| integrase family protein [Rahnella sp. Y9602] gi|321167386|gb|ADW73085.1| integrase family protein [Rahnella sp. Y9602] Length = 328 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 22/148 (14%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212 D RN+ +L L G R SE L ++I++ T ++ K + R +PL + K + + Sbjct: 183 DNRNAVLLCL--ATGGRWSEVADLKAEHIINCMLTF-MKTKNGRRRTIPLSEGLVKMVKK 239 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 F N + R + KP LP H LRH+FATH Sbjct: 240 RSTGKLFTPNYDTVRNTLRAM--KP-----------------DLPAGQAVHVLRHTFATH 280 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + NGG++ ++Q ILGH + T +Y + Sbjct: 281 FMMNGGNIITLQRILGHSTVQQTMVYAH 308 >gi|57234825|ref|YP_181071.1| phage integrase family site specific recombinase [Dehalococcoides ethenogenes 195] gi|57225273|gb|AAW40330.1| site-specific recombinase, phage integrase family [Dehalococcoides ethenogenes 195] Length = 336 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 80/185 (43%), Gaps = 19/185 (10%) Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178 +KK LP + LVD + H K AR+ ++ GLR SE +L Sbjct: 97 VKKPKHLPEYVEPADIEKLVDAIT--CKHNHKDTIARDEMLIRFAQMTGLRRSELANLKV 154 Query: 179 QNIMDDQSTLRI-QGKGDKIRIVPL-LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 +I ++ T+ + QGKG K R VP+ L + K P D N+ R I K Sbjct: 155 SDIQLEKRTVFVRQGKGMKDRAVPIPLGLISKLTSFLAHKQPSDSLFNLT---SRSITDK 211 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + + G+ + H LRHS+A LL G L S+Q++LGH L TT Sbjct: 212 ----------LSTWSKKAGVKIH--PHQLRHSYAEQLLEKGAALTSVQALLGHESLQTTS 259 Query: 297 IYTNV 301 +Y + Sbjct: 260 VYLGI 264 >gi|298253391|ref|ZP_06977183.1| phage-like integrase [Gardnerella vaginalis 5-1] gi|297532786|gb|EFH71672.1| phage-like integrase [Gardnerella vaginalis 5-1] Length = 279 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/220 (25%), Positives = 93/220 (42%), Gaps = 31/220 (14%) Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 + + K + + I+ F YL I T+ ++ +++ S LP ++ ++ V Sbjct: 70 ANETRKSNRAAIRGFFNYLFHTHIRTDDPAFDLPSVRPSRPLPHPCPDQYITNALEQV-- 127 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGKGDKIRIV 200 H K ++ L G GLR E + +I++D L I GKG+K R + Sbjct: 128 ---HNNK-----ERLMIILAAGYGLRRCEICRIHSNDIINDAYGGYALIIHGKGNKERSL 179 Query: 201 PLLPSVRKAIL-EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ + I+ E+ L P G+ + V + YI + L LP Sbjct: 180 PISTDIAMHIIAEHGYLYP----------------GRYPDTHVEESYIGKRLSDL-LPNG 222 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 + H+LRH FAT D+ ++ LGH ++TTQ Y Sbjct: 223 WSGHSLRHRFATTAYCKTHDIFAVSRALGHESVATTQRYV 262 >gi|257452045|ref|ZP_05617344.1| putative integrase [Fusobacterium sp. 3_1_5R] gi|317058593|ref|ZP_07923078.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R] gi|313684269|gb|EFS21104.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R] Length = 329 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/252 (22%), Positives = 116/252 (46%), Gaps = 27/252 (10%) Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDR----SLKRSLSGIKSFLKYLKKRKITTESNILNM 116 + I+ + ++R+++++ +++K R +++R LS SF +L+ +S + + Sbjct: 88 KEIKYIVTDDLRSYLTEYQSEKQSSRVTIDNIRRILS---SFFSWLEDEDYILKSPVRRI 144 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 +K +S+ ++++ + D + HE R+ A++ +L G+R+ E + L Sbjct: 145 HKVKTISSIKDTYSDEELERMRD-----SCHEI-----RDLALIDILASTGMRVGELVLL 194 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 Q+I + + GKGDK R+V + + Y + ++ LF +R K Sbjct: 195 NRQDIQFGERECIVFGKGDKERVVYFDARTKIHLQNY-----LNTRVDSNPALFVALR-K 248 Query: 237 PLNP---GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 P N G + +R++ + L + H R + AT + G + +Q +LGH R+ Sbjct: 249 PYNRLTIGGIEVRLRKIGKELEIN-KVHPHKFRRTLATIAIDKGMPIEQLQKLLGHRRID 307 Query: 294 TTQIYTNVNSKN 305 TT Y V N Sbjct: 308 TTLQYAMVKQSN 319 >gi|228924524|ref|ZP_04087724.1| Tyrosine recombinase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835149|gb|EEM80590.1| Tyrosine recombinase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 357 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 69/304 (22%), Positives = 126/304 (41%), Gaps = 42/304 (13%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK---------RRTQKIGD 85 TL +Y D R F +L +E+ I + I+ +S++++ K + Q + + Sbjct: 43 TLLNYVYDFRVFFNWLL--SEQIIEFKPIKDISFSDLENLKKKDVENFMRFLKLQQNMQN 100 Query: 86 RSLKRSLSGIKSFLKYL------------------KKRKITTESNILNMRNLKKSNSLPR 127 S+ R +S +KS KYL K +I + LN R + + + Sbjct: 101 SSVNRKISALKSLFKYLTSLSENEDGECYFYRNVMAKIEIHKDKETLNARAKRMRSKIFH 160 Query: 128 ALNEKQALTLV--DNVLLHTSHETKWI---DARNSAILYLLYGCGLRISEALSLTPQNIM 182 ++++ L V ++ T H+ + R+ AIL L G G+R+SE L ++I Sbjct: 161 NDDDQEFLNYVKYEHEKALTKHQLFYFLRDKERDVAILSLFLGSGIRVSELADLRMEDIN 220 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKP 237 + + + KG+K V + P + +Y ++ P N+ L ++ +P Sbjct: 221 LKERLIDVIRKGNKEDSVWITPIALNDLEKYMEIRDNKYAPGKELQNVFLSKYKHT-AQP 279 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L+ Q + + + G +S H LRH+ A L D + LGH T + Sbjct: 280 LSVRAIQDIVEKYTKAFGKKMS--PHKLRHTLANKLYMEEKDSLQVMQQLGHTSQDTALL 337 Query: 298 YTNV 301 YT + Sbjct: 338 YTQL 341 >gi|116048748|ref|YP_792452.1| putative integrase [Pseudomonas aeruginosa UCBPP-PA14] gi|115583969|gb|ABJ09984.1| putative integrase [Pseudomonas aeruginosa UCBPP-PA14] Length = 258 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 58/241 (24%), Positives = 96/241 (39%), Gaps = 39/241 (16%) Query: 67 SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKSNSL 125 SY +R KR + I ++L L +++ LK +I + + ++ LK Sbjct: 20 SYASLR---RKRLEEGISGKTLNNELGYLRAVFNELKDLGQIDYGNPLAGVKLLKLQERE 76 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 L +Q L+D++ ++ + + L G R SEA L P + + Sbjct: 77 LSWLTTEQIGELLDSI------RSRCDNPHTELVTLLCLATGARWSEAEKL-PAHRLQGN 129 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245 K K+R VP+ P + ++ + G F Sbjct: 130 VVTYAGTKSGKVRHVPIPPELANRASAHWRM-----------------------HGPFTS 166 Query: 246 YIRQLRRYLG-----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 I RR L LP +H LRHSFA+H + NGG++ ++Q ILGH L+ T Y + Sbjct: 167 CITSFRRALDRTTIQLPQGQASHALRHSFASHFMMNGGNILTLQKILGHSTLTMTMRYAH 226 Query: 301 V 301 + Sbjct: 227 L 227 >gi|319896531|ref|YP_004134724.1| hypothetical protein HIBPF01270 [Haemophilus influenzae F3031] gi|317432033|emb|CBY80381.1| phage integrase [Haemophilus influenzae F3031] Length = 337 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 60/142 (42%), Gaps = 21/142 (14%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 I+ + G R SEA +LT +M + T K K R VP+ E +D+ P Sbjct: 197 IVRICLATGARWSEAETLTQSQVMPYKITF-TNTKSKKNRTVPISK-------ELFDMLP 248 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278 RG+ N LR + LP H LRH+FA+H + NGG Sbjct: 249 -------------KKRGRLFNDAYESFENAVLRAEIELPKGQLTHVLRHTFASHFMMNGG 295 Query: 279 DLRSIQSILGHFRLSTTQIYTN 300 ++ ++ ILGH + T Y + Sbjct: 296 NILVLKEILGHSTIEMTMRYAH 317 >gi|168213629|ref|ZP_02639254.1| phage integrase [Clostridium perfringens CPE str. F4969] gi|170714780|gb|EDT26962.1| phage integrase [Clostridium perfringens CPE str. F4969] Length = 400 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 85/189 (44%), Gaps = 49/189 (25%) Query: 152 IDARNSAILYLLYGCGLRISEALSL--TPQNIMDD--------QSTLRIQGKGDK----- 196 ++ +N + L G GLR+ E L+L T N ++ +ST +I KG++ Sbjct: 203 MNNKNGMLYILALGTGLRLGEILALKWTDINFKNNYIDINKAIKSTYKIDSKGNREFQII 262 Query: 197 ---------IRIVPLLPSV--------------RKAILEYYDLCPFDLNLNIQLPLFRGI 233 IR VPL ++ R + +E Y FD NL P+ Sbjct: 263 EQQPKTKNSIRTVPLNNNLIELLQQHRKKQMIDRDSNIEIY----FDNNLVFSTPI---- 314 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 G LN ++ +++ + L H LRH+FAT L NG +++Q+ILGH +S Sbjct: 315 -GNYLNESNVRKTFKRILKKCNLK-ELRFHDLRHTFATRLFENGVPPKTVQTILGHSDIS 372 Query: 294 TT-QIYTNV 301 TT IYT+V Sbjct: 373 TTLNIYTHV 381 >gi|116049139|ref|YP_792059.1| putative bacteriophage integrase [Pseudomonas aeruginosa UCBPP-PA14] gi|37596415|gb|AAQ94690.1| PA0728 [Pseudomonas phage Pf1] gi|115584360|gb|ABJ10375.1| putative bacteriophage integrase [Pseudomonas aeruginosa UCBPP-PA14] Length = 338 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 21/141 (14%) Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224 G R SEA LT ++ D S + K ++R VP+ ++ + +Y+ Sbjct: 194 ATGARWSEAQGLT-LPMVRDGSVVFSNTKSKRVRSVPISTDLQARLEKYFA--------- 243 Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283 G+ P + + R ++R + LP H LRH+FA+H + NGG++ ++ Sbjct: 244 ----------GRNRFPSCREAFARMVKRCGIVLPRGQCTHVLRHTFASHFMMNGGNILAL 293 Query: 284 QSILGHFRLSTTQIYTNVNSK 304 + ILGH L+ T Y +++ + Sbjct: 294 KEILGHSSLNMTMRYAHLSPE 314 >gi|229070616|ref|ZP_04203854.1| Phage integrase [Bacillus cereus F65185] gi|228712521|gb|EEL64458.1| Phage integrase [Bacillus cereus F65185] Length = 351 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 77/295 (26%), Positives = 126/295 (42%), Gaps = 57/295 (19%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 S+ T Q Y D FL ++ K TI TI++LS+ E+ + + ++K +L++ Sbjct: 66 SERTKQQYLHDLSHFLRYI------KETIGTIQELSHNEMEIYFYEL-SKKYASTTLRKK 118 Query: 92 LSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVD-----NVLLH 144 + ++ FLKY+ ++ S+ L ++KK + R L ++ ++D N ++ Sbjct: 119 KTVVQQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLYPEEVTQILDELKKSNYFVY 178 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIV 200 T+ +LL GLRI E + +++ S LR+ GKG+K R V Sbjct: 179 TA-------------FFLLTTTGLRIEEIATAKWADLVFHSSLNAYLLRVVGKGNKSREV 225 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQ-----LPLFRG--IRGKPLNPGV----------F 243 + A+ L L+ LP G R L+ V F Sbjct: 226 RIFEDTLDALCHVRSLRKQTTELDASSTSAFLPKADGSNYRADYLSSLVAKKIEELNLDF 285 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 RY RQ R T HT RH A +L+ G +L+ I+ LGH + TT+ Y Sbjct: 286 LRY-RQDR--------ITPHTCRHFMANYLMEKGVELKKIRDYLGHESIMTTERY 331 >gi|330502131|ref|YP_004379000.1| putative integrase [Pseudomonas mendocina NK-01] gi|328916417|gb|AEB57248.1| putative integrase [Pseudomonas mendocina NK-01] Length = 312 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 23/145 (15%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 I + G R SEA L P + + T G K+R VP+ + I+ ++ Sbjct: 174 IALICLATGARWSEAEKLKPTGLRNGVITFSGTKNG-KVRSVPITAELEAKIVRHWKQ-- 230 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGV--FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 G+P N + F+R + R + LP AH LRH+FA+H + N Sbjct: 231 ---------------HGQP-NSAITSFRRAL--ARTTIRLPKGQAAHALRHTFASHFIQN 272 Query: 277 GGDLRSIQSILGHFRLSTTQIYTNV 301 GG++ ++Q I GH L+ T Y ++ Sbjct: 273 GGNILTLQKIQGHSCLAMTMRYAHL 297 >gi|298206478|ref|YP_003717580.1| resolvase/integrase [Escherichia coli ETEC 1392/75] gi|297374350|emb|CBL93324.1| resolvase/integrase [Escherichia coli ETEC 1392/75] Length = 268 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 59/238 (24%), Positives = 96/238 (40%), Gaps = 70/238 (29%) Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHT-------SHETKWI-----DARNSAILYLLYG 165 + ++ SLP A++ AL L ++H + E + D R +L L+ Sbjct: 19 SAEQPASLPVAIDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVPDLRRKMLLATLWN 78 Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL-------------- 211 G RI+EAL+LT +GD + P P V+ A L Sbjct: 79 TGARINEALALT---------------RGD-FSLTPPYPFVQLAALKQRTEKAARTAGRT 122 Query: 212 ----EYYDLCPFD------------LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 + Y L P L I + G+ N +++ R +R ++G Sbjct: 123 PARQQTYRLVPLSDFWYVSQLQTMVATLKISMERRNKRTGRTENVRIWEVTGRTVRTWIG 182 Query: 256 LPLSTTA------------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 ++T A HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 183 EAVATAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240 >gi|308188180|ref|YP_003932311.1| Integrase [Pantoea vagans C9-1] gi|308058690|gb|ADO10862.1| Integrase [Pantoea vagans C9-1] Length = 337 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/181 (27%), Positives = 80/181 (44%), Gaps = 15/181 (8%) Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE------ALSLTPQN 180 R L+E QA +DN+ + E++ + I LL C S+ L L Sbjct: 147 RRLDEWQAPNPLDNIREYKIAESEMAYLTDEEIRSLLRECEASTSKDLLTVVKLCLATGA 206 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240 + TL KG++IR ++ + K + P L +LP R + KPL Sbjct: 207 RWGEAETL----KGNQIRAGKVIFTKTKG--KKNRAIPISDALIAELPASR--KAKPLFS 258 Query: 241 GVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 + + L+R + P H LRH+FA+H + NGG++ +Q ILGH + T Y+ Sbjct: 259 SCYAAFRSALKRAEIETPAGQLTHVLRHTFASHFMMNGGNILVLQRILGHTDIKVTMRYS 318 Query: 300 N 300 + Sbjct: 319 H 319 >gi|256838892|ref|ZP_05544402.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256739811|gb|EEU53135.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 389 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 76/318 (23%), Positives = 138/318 (43%), Gaps = 42/318 (13%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 +GN ++ +LL +R N + + T+ +Y R F+ TE K++ Sbjct: 100 FQGNAGMQMTLLKLL-DRHNEEMKARVGVDRAPTTMSTYVYTRRTLAEFIK--TEFKVSD 156 Query: 61 QTIRQLSYTEIRAF----ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116 QL+ IR + + K+ K+ +++ LS +K + K + + + + Sbjct: 157 LAFGQLNEQFIRDYQDFCLEKK---KLAMETVRHYLSILKKICRIAYKEGHSEKYHFCHF 213 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL---YLLYGC--GLRIS 171 + K+ + P+AL+ + L D + + R S ++ L+ C G + Sbjct: 214 KLPKQKETTPKALSRENFEKLRD---------LEIPEKRRSHVITRDLFLFACYTGTAYA 264 Query: 172 EALSLTPQNIM-DDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227 +A+S+T +N+ DD+ +L ++ K D + V LLP I +Y D + ++ Sbjct: 265 DAVSITRENLFQDDEGSLWLKYRRKKTDYLGRVKLLPEALALIGKYRD--------DTRI 316 Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSI 286 LF P + + ++ LR GL H RHSFA+ + L G + +I + Sbjct: 317 TLF-----PPQDYHTLRANMKSLRLMAGLSQDLVYHMGRHSFASLVTLEEGVPIETISKM 371 Query: 287 LGHFRLSTTQIYTNVNSK 304 LGH + TTQIY V K Sbjct: 372 LGHSNIKTTQIYARVTPK 389 >gi|198243118|ref|YP_002216741.1| phage integrase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197937634|gb|ACH74967.1| phage integrase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326624498|gb|EGE30843.1| phage integrase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 341 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 30/154 (19%) Query: 153 DARNSAILYLLYGC---GLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSV 206 D+++ ++L + C G R SEA +L + S RI + KG K R VP+ Sbjct: 190 DSQSPSLLMIAKVCLATGARWSEAENLQGHQL----SKYRITYTKTKGKKNRTVPI---- 241 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 +L +LP RG P F+R ++ R + LP H LR Sbjct: 242 -------------SQDLYEELPKNRGKLFTPCRK-AFERAVK--RAGIELPEGQCTHVLR 285 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 H+FA+H + NGG++ ++ ILGH + T +Y + Sbjct: 286 HTFASHFMMNGGNILVLRDILGHADIKMTMVYAH 319 >gi|1679807|emb|CAA96221.1| integrase [Haemophilus phage S2] Length = 337 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 60/142 (42%), Gaps = 21/142 (14%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 I+ + G R SEA +LT +M + T K K R VP+ E +D+ P Sbjct: 197 IVRICLATGARWSEAETLTQSQVMPYKITF-TNTKSKKNRTVPISK-------ELFDMLP 248 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278 RG+ N LR + LP H LRH+FA+H + NGG Sbjct: 249 -------------KKRGRLFNDAYESFENAVLRAEIELPKGQLTHVLRHTFASHFMMNGG 295 Query: 279 DLRSIQSILGHFRLSTTQIYTN 300 ++ ++ ILGH + T Y + Sbjct: 296 NILVLKEILGHSTIEMTMRYAH 317 >gi|325860247|ref|ZP_08173372.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325482334|gb|EGC85342.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 407 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 17/167 (10%) Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIR 198 L+ ++ + + R + IL L CGLR + LT +N+ L+ + KG Sbjct: 240 LIQCHYDNENPNVRRAFILCLY--CGLRFCDVKDLTYKNVDYTNRLLKFEQNKTKGHSAH 297 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 ++P + +L P DLN +I LP + +R+I++ G+ Sbjct: 298 SGVIIP-LNDGLLSLIGEAPEDLNSSIFNLPSYESCSKS------VKRWIKRA----GIN 346 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + H RHSFA ++L+NG +++++ S+LGH L T+ YT K Sbjct: 347 KHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393 >gi|9628601|ref|NP_043466.1| integrase [Haemophilus phage HP1] gi|138561|sp|P21442|VINT_BPHP1 RecName: Full=Integrase gi|459175|gb|AAB09182.1| integrase [Haemophilus phage HP1] Length = 337 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 60/142 (42%), Gaps = 21/142 (14%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 I+ + G R SEA +LT +M + T K K R VP+ E +D+ P Sbjct: 197 IVRICLATGARWSEAETLTQSQVMPYKITF-TNTKSKKNRTVPISK-------ELFDMLP 248 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278 RG+ N LR + LP H LRH+FA+H + NGG Sbjct: 249 -------------KKRGRLFNDAYESFENAVLRAEIELPKGQLTHVLRHTFASHFMMNGG 295 Query: 279 DLRSIQSILGHFRLSTTQIYTN 300 ++ ++ ILGH + T Y + Sbjct: 296 NILVLKEILGHSTIEMTMRYAH 317 >gi|303237761|ref|ZP_07324320.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302482047|gb|EFL45083.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 410 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 14/147 (9%) Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 ++ C GL + +LTP NI +DD+ + + + + LL + K+I+ Y Sbjct: 249 FIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTNVETNVLLLDIPKSIIAKYSHK 308 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 + LF + + N Y++++ G+ + T H RH+FAT LS G Sbjct: 309 TYR-----DGKLFPILTNQKTNA-----YLKEIADICGIKKNLTFHLARHTFATMSLSKG 358 Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSK 304 + S+ +LGH + TTQIY + +K Sbjct: 359 VPMESVSKMLGHTNIKTTQIYARITNK 385 >gi|19704172|ref|NP_603734.1| integrase/recombinase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19714390|gb|AAL95033.1| Integrase/recombinase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 328 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 72/294 (24%), Positives = 133/294 (45%), Gaps = 38/294 (12%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTI----RQLSYTEIRAFISKRRTQKIGDRS 87 S+ T++ Y + FL F+ + E +I + + + ++ A+I DR Sbjct: 33 SEKTVKDYMFHLKDFLHFV-YDGENDFSISEVIPLMQDIEKEDVEAYI----VHLFEDRK 87 Query: 88 LKRS-----LSGIKSFLKYLKKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLV 138 LK++ LS +KS K L+ + + + RN++ N L ++++ + + Sbjct: 88 LKKTSVNTILSALKSLYKELESNGLKNPVKYIKLFKVNRNIE--NILKVSIDDIRKII-- 143 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLR-IQGKGD 195 L E K+ RN ILY L+ G+R E L+L ++ + +D+ + +Q K Sbjct: 144 --GLYKIDSEKKY---RNITILYTLFYTGMRSKELLTLQFKHYLKREDEYFFKLVQTKSG 198 Query: 196 KIRIVPLLPSVRKAILEY--YDLCPFDLNLNI--QLPLFRG--IRGKPLNPGVFQRYIRQ 249 K P+ S+ K + EY Y + + L+L + +F + PL+ I+ Sbjct: 199 KDVYKPIHKSLVKKLEEYKEYLMSMYSLDLKDLDEKYIFSTSILDNSPLSYRSLNAIIQD 258 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + + +G +S H +RH+ AT L +G D+ I+ LGH T++Y N S Sbjct: 259 MGKLIGKDIS--PHNIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARS 310 >gi|319641868|ref|ZP_07996545.1| transposase [Bacteroides sp. 3_1_40A] gi|317386541|gb|EFV67443.1| transposase [Bacteroides sp. 3_1_40A] Length = 407 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 13/145 (8%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKG-DKIRIVPLLP--SVRKAILEYYDL 216 ++ C GL S+ L ++I++D + +R KG K +I+ +P V ILE Y Sbjct: 251 FVFCCFTGLAFSDIHGLGKEHIVEDSNGVRWIRKGRQKTKIMCNIPLMEVPLKILEKYST 310 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 + + P+ + + +N Y+++L G+ + T H RH+FAT L+N Sbjct: 311 NEYCRKHGVLFPV---LCNQKMNA-----YLKELADICGIKKTLTTHVARHTFATFALAN 362 Query: 277 GGDLRSIQSILGHFRLSTTQIYTNV 301 G + S+ +LGH + T+ Y V Sbjct: 363 GVSIESVAKMLGHTNVQMTRHYARV 387 >gi|296330503|ref|ZP_06872982.1| hypothetical protein BSU6633_05369 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674712|ref|YP_003866384.1| phage integrase-like protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296152400|gb|EFG93270.1| hypothetical protein BSU6633_05369 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412956|gb|ADM38075.1| phage integrase-like protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 77 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 38/58 (65%) Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 I+++ G+ S H LRHS+ATHL++NG L IQS+LGH + TT+IY ++ K Sbjct: 10 IKRISNRAGIKKSIHPHQLRHSYATHLINNGAPLEVIQSLLGHEKSETTKIYAQLSGK 67 >gi|162447445|ref|YP_001620577.1| tyrosine recombinase/integrase [Acholeplasma laidlawii PG-8A] gi|161985552|gb|ABX81201.1| tyrosine recombinase/integrase, xerDC family [Acholeplasma laidlawii PG-8A] Length = 310 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 82/189 (43%), Gaps = 20/189 (10%) Query: 152 IDARNSAILYLLYGCGLRISEA--LSLTPQNIMDDQSTLRIQGKG--DKIRIVPLLPSVR 207 I R+ ++ L+ G+R E ++ N++DD L + GKG K V L P V Sbjct: 130 IKYRDYVMVLLMLTTGMRTVEVERADVSDLNVIDDGEILYVHGKGKTSKSSFVRLSPLVN 189 Query: 208 KAILEY-------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 KAI Y Y+ D P + G R K N +R I+ L R +G Sbjct: 190 KAIETYIMKRSDQYEPLFID-----HKPKYLGQRMKTRN---IRRIIKDLLRDIGFDDDK 241 Query: 261 -TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 TAH+LRH+ AT G + Q I+ H +TT+IY + K+ + I + Sbjct: 242 HTAHSLRHTTATLARQYGANKDDTQKIMRHSDPATTEIYMHAEIKSQHVYEHVIAQKLLN 301 Query: 320 SITQKDKKN 328 +DKKN Sbjct: 302 QEEDEDKKN 310 >gi|309810139|ref|ZP_07703985.1| phage integrase, N-terminal SAM domain protein [Lactobacillus iners SPIN 2503V10-D] gi|308169638|gb|EFO71685.1| phage integrase, N-terminal SAM domain protein [Lactobacillus iners SPIN 2503V10-D] Length = 326 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 60/248 (24%), Positives = 109/248 (43%), Gaps = 25/248 (10%) Query: 64 RQLSYTEIRAFISK----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119 R ++ +IR ++S ++ K+ +++R LS SF +L+ +S + + + Sbjct: 88 RYITTEDIREYLSNYQLNHKSSKVTIDNIRRILS---SFFSWLEDEDYILKSPVRRIHKV 144 Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 K S+ ++++ + D+ TK R+ AI+ +L G+R+ E + L Sbjct: 145 KTGQSIKETYSDEELEIMRDSC-------TK---IRDLAIIDMLASTGMRVGEMVLLNRD 194 Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239 ++ ++ + GKGDK RIV + K LE Y D + LF + Sbjct: 195 DVNFEERECMVFGKGDKERIV-YFDARTKLHLEKY----LDSRTDNNSALFTSLSAPHER 249 Query: 240 PGV--FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 G+ + +R+L LG+ H R + AT + G + +Q +LGH R+ TT Sbjct: 250 LGIAGIEARLRKLGGELGI-YKVHPHKFRRTLATKAIDKGMPIEQLQKLLGHQRIDTTLQ 308 Query: 298 YTNVNSKN 305 Y V N Sbjct: 309 YAMVKQSN 316 >gi|295318249|gb|ADF98626.1| site-specific recombinase, phage integrase family [Clostridium botulinum F str. 230613] Length = 264 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 100/224 (44%), Gaps = 22/224 (9%) Query: 60 IQTIRQLSYTEIRAFIS---KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN- 115 ++ I+ + ++ +FIS K G R+ R + I+ F KYLK + ++NI Sbjct: 24 LEFIKSIILHDMYSFISYFQKSLNSSPGTRA--RKIVSIRQFWKYLKTKAHLIDNNIAEE 81 Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175 + K +P+ LN ++++ L LL R+ I+ + C LR+SE S Sbjct: 82 LETPKLPKRIPKYLNSEESVRL----LLECKKS-----PRDHCIITIFLNCALRLSELAS 132 Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIR 234 L + D L + GK K R + L P+ +KAI ++ + ++N N LF Sbjct: 133 LNIDQV--DNDILSVVGKDTKERKIFLTPAAKKAINDWLHIRNSINVNTN---ALFISRN 187 Query: 235 GKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNG 277 + Q +++ GL P S + H LRH+ AT + G Sbjct: 188 SNRITTRAIQNIVKKYVITSGLDPKSISTHKLRHTAATLMYKYG 231 >gi|282860181|ref|ZP_06269256.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] gi|282587070|gb|EFB92300.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] Length = 406 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 78/317 (24%), Positives = 141/317 (44%), Gaps = 49/317 (15%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 + + I+R L L +Y+ L L Y ++K + I LS + +AFI Sbjct: 123 ERIGIDRALKTFKLCTYQ------LSLLREYVQKKHKVCDI-PLSQLD-KAFIEGFEYYL 174 Query: 83 IGDRSLKRS-----LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 DR LKRS LS +++ ++ K+ + L + ++ PR++ +++ + Sbjct: 175 TIDRRLKRSSISSALSTLQTIVRMALKKGVLDFYPFLGY-SYERPKGEPRSITKEELERI 233 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGD 195 +D E +W + R L++ + C GL IS+ +L +NI+ ++ L I+G+ Sbjct: 234 ID-------LEIEWENYRIVRDLFV-FSCFTGLAISDVRNLREENIVTEEGKLCIKGRRM 285 Query: 196 KIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL----NPGVFQRYIR 248 K + V +LP L I + +RGIR + + + Sbjct: 286 KTKTPYRVQVLPPA----------------LTI-MNRYRGIRAGFVFDVPTTDIVLNGMH 328 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 ++R +G+ T H RH+FA+ + LS G + ++ +LGH L TTQ+Y V+S+ Sbjct: 329 YIQRNIGMETPLTFHMARHTFASIITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERIH 388 Query: 308 DWMMEIYDQTHPSITQK 324 M I + + T K Sbjct: 389 RDMQAIQQRIQDTFTLK 405 >gi|186896896|ref|YP_001874008.1| integrase family protein [Yersinia pseudotuberculosis PB1/+] gi|186699922|gb|ACC90551.1| integrase family protein [Yersinia pseudotuberculosis PB1/+] Length = 351 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 22/147 (14%) Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 + ++ + G R SEA L + + + T I+ KG K R VP+ E YD Sbjct: 199 ATVVKICLSTGARWSEAEGLKLSQLTEHKITF-IKTKGRKNRTVPISK-------ELYDE 250 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLS 275 P +G G L + + R L+R + LP +H LRH+FA+H + Sbjct: 251 LPK-----------KGKSG--LFTACYAEFRRALKRSEIELPPGQLSHVLRHTFASHFMM 297 Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVN 302 GG++ +Q ILGH + T Y++ + Sbjct: 298 KGGNILVLQRILGHTDIKMTMRYSHFS 324 >gi|194446198|ref|YP_002043286.1| site-specific recombinase, phage integrase family [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194404861|gb|ACF65083.1| site-specific recombinase, phage integrase family [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 326 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 22/144 (15%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 + L G R +E +L P I + T ++ K K R VP+ + K + E Sbjct: 184 VALLCLSTGGRWTEVATLKPAQITSCRVTF-LKTKNGKKRTVPISAELEKKVKEEASAKL 242 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNG 277 F ++ ++++ LRR +P + H LRH+FA+H + NG Sbjct: 243 FKVD--------------------YEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNG 282 Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301 G++ ++Q ILGH + T Y ++ Sbjct: 283 GNIIALQQILGHASIQQTMAYAHL 306 >gi|23464983|ref|NP_695586.1| phage family integrase/recombinase protein [Bifidobacterium longum NCC2705] gi|23325582|gb|AAN24222.1| probable phage-family integrase/recombinase protein [Bifidobacterium longum NCC2705] Length = 276 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 70/147 (47%), Gaps = 23/147 (15%) Query: 159 ILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 +L L GLR+SE ++ ++++ D +L ++GKGDK RIVP+ + K I Sbjct: 133 MLRLGAEAGLRLSEIAAVHSRDVLEGDAGPSLIVRGKGDKQRIVPISEDLAKRITAAPGW 192 Query: 217 CPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYI-RQLRRYLGLPLSTTAHTLRHSFATHLL 274 LF G RG V + Y+ R L R L P H+LRH +AT + Sbjct: 193 ------------LFPGRWRGH-----VEKSYVSRHLTRLL--PDGWGPHSLRHRYATRMY 233 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV 301 DL + +LGH + TTQIY + Sbjct: 234 ETTHDLLLVSKLLGHSSVETTQIYVAM 260 >gi|311233617|gb|ADP86471.1| integrase family protein [Desulfovibrio vulgaris RCH1] Length = 395 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/202 (27%), Positives = 91/202 (45%), Gaps = 20/202 (9%) Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166 + E ++ +K N R L E +A TL+ + E + D +SA+L L C Sbjct: 191 VNGECPCTRIKKPRKDNRRMRFLTEAEASTLLVEL------EKRSKDTHDSALLSLF--C 242 Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDK-IRIVPLLPSVRKAILEYYDLCPFDLNLNI 225 GLR E SLT ++ T+ I+ +K R + VR ++E LN Sbjct: 243 GLRAGEIHSLTWTDLNFTSGTIYIRDPKNKHSRHAYMTDEVRSMLIERSK------QLNA 296 Query: 226 QLPLFRGIRGKPLN--PGVFQRYIRQLRRYLGLPLS---TTAHTLRHSFATHLLSNGGDL 280 +F G N F+R + QL G+ S HTLRH+FA+ L+ +G L Sbjct: 297 TEYVFPAQNGAKRNWVSDTFERVVDQLGLNDGITDSRQRVVFHTLRHTFASWLVQDGTPL 356 Query: 281 RSIQSILGHFRLSTTQIYTNVN 302 ++ ++GH L T+ Y++++ Sbjct: 357 YTVAELMGHTTLEMTKRYSHLS 378 >gi|239622583|ref|ZP_04665614.1| phage protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239514580|gb|EEQ54447.1| phage protein [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 279 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 70/147 (47%), Gaps = 23/147 (15%) Query: 159 ILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 +L L GLR+SE ++ ++++ D +L ++GKGDK RIVP+ + K I Sbjct: 136 MLRLGAEAGLRLSEIAAVHSRDVLEGDAGPSLIVRGKGDKQRIVPISEDLAKRITAAPGW 195 Query: 217 CPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYI-RQLRRYLGLPLSTTAHTLRHSFATHLL 274 LF G RG V + Y+ R L R L P H+LRH +AT + Sbjct: 196 ------------LFPGRWRGH-----VEKSYVSRHLTRLL--PDGWGPHSLRHRYATRMY 236 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV 301 DL + +LGH + TTQIY + Sbjct: 237 ETTHDLLLVSKLLGHSSVETTQIYVAM 263 >gi|110639719|ref|YP_679929.1| integrase [Cytophaga hutchinsonii ATCC 33406] gi|110282400|gb|ABG60586.1| integrase [Cytophaga hutchinsonii ATCC 33406] Length = 308 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 64/259 (24%), Positives = 108/259 (41%), Gaps = 42/259 (16%) Query: 69 TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT----ESNILNMRNLKKSNS 124 E++ F+ ++ Q + +++K L +K LK+ K K T + R + Sbjct: 51 VEVQTFVFQKLQQGLSQKTIKDMLIVLKMVLKFGAKNKWLTYHPFDIQFPTQREKQTIEV 110 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 L R K ++H E RN I Y+ G+RI E +LT +++ + Sbjct: 111 LSRGDQRK---------VMHYVQEH--FTFRNLGI-YICLSAGIRIGEICALTWEDVDTE 158 Query: 185 QSTL-------RIQGKGDKIRIVPLL---PSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234 + + RI D +R L+ P + +I E P +L L + I Sbjct: 159 RGIIHIRRTIQRIYNIEDGMRKTELMLDTPKTKNSIRE----IPMSGDLLKMLKPVKKII 214 Query: 235 G----------KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284 KP P ++ Y ++L + L LP H LRHSFAT + + D +++ Sbjct: 215 NNSFFVLTNDVKPTEPRTYRSYYKKLMKELALP-DLKFHGLRHSFATRCIESKCDYKTVS 273 Query: 285 SILGHFRLSTT-QIYTNVN 302 +LGH +STT +Y + N Sbjct: 274 VLLGHSNISTTLNLYVHPN 292 >gi|237794601|ref|YP_002862153.1| site-specific recombinase, phage integrase family [Clostridium botulinum Ba4 str. 657] gi|229261244|gb|ACQ52277.1| site-specific recombinase, phage integrase family [Clostridium botulinum Ba4 str. 657] Length = 355 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 45/195 (23%) Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG--CGLRISEALSLTPQNIMDD 184 RALNE + L+++ N L +L G CGLR+ E L LT +I + Sbjct: 172 RALNENEENKLLEDF------------KSNKYYLVILLGLKCGLRLGEILGLTWSDIDEV 219 Query: 185 QSTLRIQGKGDKI----------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228 T+ I + ++ RI+P+ + + ++ + +N+N ++ Sbjct: 220 NKTIIINKQWKQVNPTKYNFGELKSKNSNRIIPISKNTLDELKKHKKI----VNINNRIF 275 Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 F+ + L R L L T H LRH++AT L+SNG D +++ +L Sbjct: 276 KFKNTNSSCI----------CLNRLLKLKGYDITVHELRHTYATKLISNGVDFKTVAQLL 325 Query: 288 GHFRLSTTQIYTNVN 302 GH T + Y++VN Sbjct: 326 GHTVEQTMKTYSHVN 340 >gi|261368880|ref|ZP_05981763.1| site-specific recombinase, phage integrase family [Subdoligranulum variabile DSM 15176] gi|282568975|gb|EFB74510.1| site-specific recombinase, phage integrase family [Subdoligranulum variabile DSM 15176] Length = 391 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288 LFR G P+ P F +++ + GLP + + H+LRH+ A+ L++ G D+R++ +LG Sbjct: 300 LFRQPSGDPMVPTTFTFRFKKILKENGLPQNLSVHSLRHTNASLLIAQGVDVRTVAGLLG 359 Query: 289 HFRLSTT-QIYTNVNSKN 305 H + STT IY + K Sbjct: 360 HSQPSTTLDIYAHAFDKT 377 >gi|294506505|ref|YP_003570563.1| Phage integrase family protein [Salinibacter ruber M8] gi|294342833|emb|CBH23611.1| Phage integrase family protein [Salinibacter ruber M8] Length = 413 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 63/282 (22%), Positives = 117/282 (41%), Gaps = 29/282 (10%) Query: 35 TLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93 T +SY R+F F+ Y E++ + + E R + + R ++ R L Sbjct: 129 TFRSYRTTCRKFTAFIEETYGREEVPFGALEAELFREFRTYCYEERGNSTN--TVGRELG 186 Query: 94 GIKSFLKY-LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152 +++ +++ +K+ K++ + S L ++ + D L E+ Sbjct: 187 IMRTLVRHAMKEGKLS--GYPFEHITIDSEPSQKELLTPEEVERIAD---LEIDEESPAA 241 Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-----TLRIQGKGDKIRIVPLLPSVR 207 +AR L+ Y G+R S+ +L Q+I + +S +++ D + VPL+P Sbjct: 242 EARR-WFLFAYYAGGMRFSDVATLQWQHIREGRSGRPRVCYKMKKTADTVG-VPLIPEA- 298 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGI---------RGKPLNPGVFQRYIRQLRRYLGLPL 258 K IL YY+ + + P+ GI R K R++++L G+ Sbjct: 299 KEILGYYEEGDGE---DWVFPISEGIDPGDEEALHRRKCQRNSAANRHLKELAGRAGIEK 355 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 T H R++ A L N GD+ + LGH + TQ Y + Sbjct: 356 RVTFHLSRNAAAWKLYQNVGDIYKVSKFLGHSNVEQTQDYID 397 >gi|303237560|ref|ZP_07324124.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302482279|gb|EFL45310.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 410 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 14/147 (9%) Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 ++ C GL + +LTP NI +DD+ + + + + LL + K+I+ Y Sbjct: 249 FIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPKSIIAKYSHK 308 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 + LF + + N Y++++ G+ + T H RH+FAT LS G Sbjct: 309 TYR-----DGKLFPILTNQKTNA-----YLKEIADICGIKKNLTFHLARHTFATMSLSKG 358 Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSK 304 + S+ +LGH + TTQIY + +K Sbjct: 359 VPMESVSKMLGHTNIKTTQIYARITNK 385 >gi|255012810|ref|ZP_05284936.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7] Length = 406 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/170 (24%), Positives = 81/170 (47%), Gaps = 17/170 (10%) Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI 199 ++L K ++ ++ ++ GL S+ L+P++++ D++ L I+ K +I Sbjct: 232 IILAKEFTIKRVEQVRDVFVFCIFT-GLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKI 290 Query: 200 ---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +P+LP + +Y D+ L LP+ R Y++++ G+ Sbjct: 291 MCNIPVLPVAASILDKYKDVVECTGKL---LPVLCNQR--------MNSYLKEIADVCGI 339 Query: 257 PLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + + HT RHS+AT + L+NG + ++ +LGH S T+ Y V +N Sbjct: 340 HKNLSTHTARHSYATSICLANGVSMENVAKMLGHADTSVTKHYARVLDQN 389 >gi|238764951|ref|ZP_04625889.1| Integrase [Yersinia kristensenii ATCC 33638] gi|238696810|gb|EEP89589.1| Integrase [Yersinia kristensenii ATCC 33638] Length = 330 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 22/148 (14%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212 DAR AIL L G R +EA L ++I+ ++ T K K R VP+ SV I Sbjct: 180 DARRVAILCL--STGARWNEAAGLRGEHIVGNRVTF-FNTKNGKSRSVPVANSVLSLIKT 236 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 + L+R ++ F+ +R+++ LP H +RH+FATH Sbjct: 237 HR-----------TGQLYR------VDYLQFREILREVKP--DLPKGQATHVMRHTFATH 277 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + NGG++ ++Q ILGH + T Y + Sbjct: 278 FMMNGGNIVTLQRILGHATIQQTMTYAH 305 >gi|313159042|gb|EFR58417.1| site-specific recombinase, phage integrase family [Alistipes sp. HGB5] Length = 423 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/127 (35%), Positives = 63/127 (49%), Gaps = 22/127 (17%) Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG-VF--------QRYIRQL 250 V LLP V KAILE Y ++P R R P NPG VF ++ + Sbjct: 293 VKLLP-VAKAILEKY-----------RIPANRFNRLFPENPGKVFPVASLKSSDASLKHI 340 Query: 251 RRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 R G+ + HT RH+FAT + L NG L ++ +LGH +TTQIY V ++ G+ Sbjct: 341 ARQCGIAKNLKFHTARHTFATTVSLMNGIPLETVSKMLGHKYTTTTQIYAKVTNQMIGNA 400 Query: 310 MMEIYDQ 316 + I D+ Sbjct: 401 ISRIEDK 407 >gi|291560453|emb|CBL39253.1| Site-specific recombinase XerD [butyrate-producing bacterium SSC/2] Length = 264 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/207 (26%), Positives = 98/207 (47%), Gaps = 21/207 (10%) Query: 19 QNW-LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI-- 75 QN+ LQ L +R +S T+ SY+ R +L +L T +I ++ F Sbjct: 13 QNYFLQRLMQQRKVSYHTVCSYKDAFRLYLRYLEDVHGISATKVSINHFDLEYLQCFCKY 72 Query: 76 --SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 KR+ + + ++ ++ IKSF++Y+ + E + ++ R L LP +E Sbjct: 73 LEEKRKNKPV---TINNRMAAIKSFMQYVAE--TAPEYSAISKRAL----MLPAQKHELP 123 Query: 134 ALTLVD---NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----DQS 186 ++ + N L+ +I AR+ +L L+Y G+R+SE L + +I + + Sbjct: 124 VMSFITKEFNALIQVCDTNTFIGARDKLMLLLMYNTGVRVSELLEIKVSDIHGADSVNHA 183 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEY 213 ++ I GKG K R VPL + K I +Y Sbjct: 184 SVIIHGKGRKQREVPLWKTTVKYINKY 210 >gi|325856178|ref|ZP_08172003.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325483649|gb|EGC86616.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 406 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 79/322 (24%), Positives = 143/322 (44%), Gaps = 59/322 (18%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 + + I+R L L++Y+ L L Y ++K + I LS + +AFI Sbjct: 123 ERIGIDRALKTFKLRTYQ------LSLLREYVQKKHKVSDI-PLSQLD-KAFIEGFEYYL 174 Query: 83 IGDRSLKRS-----LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 DR LKRS LS +++ ++ K+ + L + ++ PR++ +++ + Sbjct: 175 TIDRKLKRSSVSSALSTLQTIVRMAVKKGVLDFYPFLGY-SYERPKGEPRSITQEELERI 233 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGD 195 ++ + +W + R L++ + C GL IS+ +L +NI+ ++ L I+G Sbjct: 234 IE-------LKIEWENYRIVRDLFV-FSCFSGLAISDVRNLREENIVLEEGELCIKGSRM 285 Query: 196 KIRI---VPLLPSVRKAILEYY---------DLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 K + V +LP AI+E Y D+ D+ LN Sbjct: 286 KTKTPYRVQVLPPAW-AIMERYRGKRAGFVFDVPTTDIILN------------------- 325 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + ++R +G+ T H RH+FA+ + LS G + ++ +LGH L TTQIY V+ Sbjct: 326 --GMHHIQRNIGMESPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAVVS 383 Query: 303 SKNGGDWMMEIYDQTHPSITQK 324 S+ M E+ + + T K Sbjct: 384 SERIHRDMQEVQQRIQDTFTLK 405 >gi|121594243|ref|YP_986139.1| phage integrase family protein [Acidovorax sp. JS42] gi|120606323|gb|ABM42063.1| phage integrase family protein [Acidovorax sp. JS42] Length = 566 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 78/311 (25%), Positives = 118/311 (37%), Gaps = 58/311 (18%) Query: 27 IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 +ERG LS LT + D F FL I R S E R FI + Sbjct: 254 VERGRALSSLTTE----DAVAFRAFLRHPAPRARWIGPARPRSSPEWRPFIGG-----LS 304 Query: 85 DRSLKRSLSGIKSFLKYLKKRK--ITTESNILNMRNLKKSNSLP--RALNEKQALTLVDN 140 RS+ +LS + + ++L +++ + + +R +S SL R E + +++ Sbjct: 305 ARSVAYALSVVGAMFRWLIQQRYLLANPFAGIKVRGASRSESLAVTRVFGEGE-WSVIQA 363 Query: 141 VLLHTSHETKW---IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGKG 194 V W R +L Y GLRI E + T I D L + GKG Sbjct: 364 VAEGLEWGHGWQAPAAQRLRFVLDFAYATGLRIGELVGATLGQIETDAHGDRWLHLVGKG 423 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-------------- 240 K V L P A+ Y + +LP+ R PL P Sbjct: 424 SKAGKVALPPLACAALDRYL--------MQRKLPITPA-RWDPLAPLIGSLDQESTAGIT 474 Query: 241 -----GVFQRYIRQLRRYLGLPLSTTA--------HTLRHSFATHLLSNGGDLRSIQSIL 287 V +R+ ++ + TA H +RH+ ATH L+ G +L +++ L Sbjct: 475 ATRLWSVMRRFFTKVAEVIEKDSPATAEKLRRASPHWMRHTHATHALARGAELTTVRDNL 534 Query: 288 GHFRLSTTQIY 298 H +STT IY Sbjct: 535 RHASISTTSIY 545 >gi|295701377|ref|YP_003610378.1| integrase [Burkholderia sp. CCGE1002] gi|295441700|gb|ADG20867.1| integrase family protein [Burkholderia sp. CCGE1002] Length = 570 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 73/312 (23%), Positives = 123/312 (39%), Gaps = 60/312 (19%) Query: 27 IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 +ERG LS LT + D + FL + +R + + R F + Sbjct: 257 VERGRALSSLTTE----DAIAYRTFLRHPAPHARWVGPVRPRTSPDWRPF-----NGSLS 307 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 RS+ +LS + + ++L +++ + ++ + S + L+ A T + L+ Sbjct: 308 ARSVAHALSILGALFRWLIEQRYVLANPFAGVKVREASGA--NVLDTSHAFTEGEWALVR 365 Query: 145 TSHET-----KWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDD---QSTLRIQGK 193 T + W + +LL Y GLR SE + T +I D LR+ GK Sbjct: 366 TIADGLEWSYGWSAPAAHRLRFLLDFGYATGLRASELVGATLGHIETDARGDHWLRVTGK 425 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP------------- 240 G K+ V L P A+ Y +LP+ +R +P P Sbjct: 426 GRKLARVALPPLAWDALAHYL--------AERELPIA-PVRWRPETPVIGSLEADSESTI 476 Query: 241 ------GVFQRYIRQLRRYLGL---PLS-----TTAHTLRHSFATHLLSNGGDLRSIQSI 286 GV +R+ + + PL+ + H +RH+ ATH L G +L +++ Sbjct: 477 SSVRLWGVLRRFFLVAAKSIEADHPPLAEKLRCASPHWMRHTHATHALGRGAELTTVRDN 536 Query: 287 LGHFRLSTTQIY 298 L H +STT IY Sbjct: 537 LRHASVSTTSIY 548 >gi|229186763|ref|ZP_04313920.1| Integrase-recombinase [Bacillus cereus BGSC 6E1] gi|228596698|gb|EEK54361.1| Integrase-recombinase [Bacillus cereus BGSC 6E1] Length = 390 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 66/153 (43%), Gaps = 10/153 (6%) Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 N IL L G RI E + +++ D + L++ GKG K+R + + + + I E Sbjct: 218 NYTILLALASTGARIQELCTARVKDLHYDGKHWLKVIGKGSKVRELFISEHLYECICEMR 277 Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266 F L+ + PLF RG N + + + L TAHT R Sbjct: 278 RRRGFQTVLDRGDESPLFVNQRGNFYNSKTLSNQVTDMIKKTNLEFLQYRENPVTAHTFR 337 Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298 H+FA + G DL + LGH + TT+IY Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370 >gi|227494283|ref|ZP_03924599.1| possible site specific recombinase [Actinomyces coleocanis DSM 15436] gi|226832017|gb|EEH64400.1| possible site specific recombinase [Actinomyces coleocanis DSM 15436] Length = 286 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 69/147 (46%), Gaps = 19/147 (12%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPS--VRKAILEYY 214 IL L GLR E + + ++I++D +LR+ GKG+K RIVPL P R+ I E Sbjct: 142 ILSLAAYVGLRREEIVKVHSKDIIEDILGYSLRVHGKGNKERIVPL-PELLARQVIAECA 200 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 + L NI + + RY +L LP T H LRH F T Sbjct: 201 RNAGYLLPGNI-------------DGHMSARYAGKLATRC-LPGDITLHMLRHRFGTVAY 246 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV 301 + D+ ++Q ILGH +TT+ Y V Sbjct: 247 NRSKDIAAVQDILGHTNPATTRRYIAV 273 >gi|207093368|ref|ZP_03241155.1| integrase/recombinase (xerD) [Helicobacter pylori HPKX_438_AG0C1] Length = 202 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 94/206 (45%), Gaps = 26/206 (12%) Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174 N+ K SLPR LN+K + + +L + + + RN IL ++ GLR E L Sbjct: 8 NLAFAKTKESLPRHLNDKDLKSFLKTLLDYKPATS--FEKRNKCILLIVILGGLRKCEVL 65 Query: 175 SLTPQNIMDDQS--TLRIQGKGDK-----IRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227 ++ ++I ++ ++ IQGKG K I+ L PS+ + + Y L F+ Sbjct: 66 NIELKHIQVEEQNYSILIQGKGRKERKAYIKKSLLEPSLNAWLSDEYRLKYFN-----GA 120 Query: 228 PLFRGIRGKPLN--------PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279 LF+ + K N P +F+ + Q++ Y T H RHSFAT + D Sbjct: 121 YLFKKDKQKAQNSLTLYNFIPLIFK--LAQIKHYK--QYGTGLHLFRHSFATLIYQETQD 176 Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKN 305 L LGH L +T+IY + ++ Sbjct: 177 LVLTSRALGHSSLLSTKIYIHTTQEH 202 >gi|317049649|ref|YP_004117297.1| integrase family protein [Pantoea sp. At-9b] gi|316951266|gb|ADU70741.1| integrase family protein [Pantoea sp. At-9b] Length = 343 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/225 (25%), Positives = 95/225 (42%), Gaps = 31/225 (13%) Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL-NMRNLKKSNSLPRALNEKQALTL 137 R + + R++ L+ ++ L++ T N L N+R K S S E LT+ Sbjct: 123 RVKTVTPRTVNLELAYFRAMFNELRRLDEWTAPNPLENVREFKISES------EMAYLTI 176 Query: 138 VD-NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 + LL ++ D + I+ + G R SEA L I Q + ++ KG K Sbjct: 177 EEIRALLAECENSRSKDL--TTIVKICLATGARWSEAEGLKGNQIRAGQ-IIYVKTKGKK 233 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LG 255 R VP+ L +LP R + + L + + + ++R + Sbjct: 234 NRAVPITE-----------------KLQAELPSSR--KAQQLFATCYSAFRKAMQRAGIE 274 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 P H LRH+FA+H + NGG++ +Q ILGH + T Y + Sbjct: 275 TPAGQLTHVLRHTFASHFMMNGGNILVLQRILGHTDIKVTMRYAH 319 >gi|293372055|ref|ZP_06618451.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|19068096|gb|AAL29907.1| putative integrase [Bacteroides fragilis] gi|292632989|gb|EFF51573.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 407 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 20/153 (13%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYY 214 A ++ LY CGLR + LT +N+ L+ + KG ++P + +L Sbjct: 255 AFIFCLY-CGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIP-LNDGLLSII 312 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL---GLPLSTTAHTLRHSFAT 271 P D N I N ++ + ++R++ G+ + H RHSFA Sbjct: 313 GEAPVDKNCLI------------FNLPTYESCCKSVKRWVKRAGIDKHISWHCARHSFAV 360 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 ++L+NG +++++ S+LGH L T+ YT K Sbjct: 361 NILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393 >gi|261346812|ref|ZP_05974456.1| site-specific recombinase, phage integrase family [Providencia rustigianii DSM 4541] gi|282565212|gb|EFB70747.1| site-specific recombinase, phage integrase family [Providencia rustigianii DSM 4541] Length = 325 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 22/141 (15%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP-FD 220 L G R E +L + + + + T ++ K K RI+P+ + + I + D P FD Sbjct: 187 LCLSTGARWGEGAALHSEQVQNGRVTF-LKTKNGKKRIIPISDKLSEQI-KTKDSGPLFD 244 Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280 +N F+ +R L + LP H LRH+FA+H + NGG++ Sbjct: 245 INYE-----------------TFRLALRNL--FPELPRGQATHVLRHTFASHFVMNGGNI 285 Query: 281 RSIQSILGHFRLSTTQIYTNV 301 +++ ILGH ++ T +Y ++ Sbjct: 286 VALKEILGHASINQTMVYAHL 306 >gi|182420569|ref|ZP_02643964.2| phage integrase [Clostridium perfringens NCTC 8239] gi|182379659|gb|EDT77138.1| phage integrase [Clostridium perfringens NCTC 8239] Length = 202 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 84/189 (44%), Gaps = 49/189 (25%) Query: 152 IDARNSAILYLLYGCGLRISEALSL--TPQNIMDD--------QSTLRIQGKGDK----- 196 ++ +N + L G GLR+ E L+L T N ++ +ST +I KG++ Sbjct: 5 MNNKNGMLYILALGTGLRLGEILALKWTDINFKNNYIDINKAIKSTYKIDSKGNREFQII 64 Query: 197 ---------IRIVPLLPSV--------------RKAILEYYDLCPFDLNLNIQLPLFRGI 233 IR VPL ++ R + +E Y FD NL P+ Sbjct: 65 EQQPKTKNSIRTVPLNDNLIELLQQHRKKQMIDRDSNIEIY----FDNNLVFSTPI---- 116 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 G LN ++ +++ L H LRH+FAT L NG +++Q+ILGH +S Sbjct: 117 -GNYLNESNVRKTFKRILNKCNLK-ELRFHDLRHTFATRLFENGVPPKTVQTILGHSDIS 174 Query: 294 TT-QIYTNV 301 TT IYT+V Sbjct: 175 TTLNIYTHV 183 >gi|323973234|gb|EGB68426.1| phage integrase [Escherichia coli TA007] Length = 331 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/222 (25%), Positives = 90/222 (40%), Gaps = 46/222 (20%) Query: 87 SLKRSLSGIKSFLKYLKKRKI-TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 S+ R L + + L ++ E+ + +R LK N+ L++ + +D +L Sbjct: 122 SINRDLCALSAMFSLLIDAEVYHNENPVRGIRKLKVQNTEMAFLSDDE----IDRLLKRL 177 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR------- 198 DAR AIL L G R EA +L ++I+ ++ T K K R Sbjct: 178 EG-----DARRIAILCL--STGARWKEASTLRGEHIVGNRVTF-FNTKNGKSRSVPVADS 229 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +VPL+ + R +L D F L P LP Sbjct: 230 VVPLIKTRRTGLLYQVDYLSFREILQEVKP--------------------------DLPK 263 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 H +RH+FATH + NGG++ ++Q ILGH + T Y + Sbjct: 264 GQATHVMRHTFATHFMMNGGNIVTLQRILGHATIQQTMTYAH 305 >gi|317504561|ref|ZP_07962535.1| integrase [Prevotella salivae DSM 15606] gi|315664332|gb|EFV04025.1| integrase [Prevotella salivae DSM 15606] Length = 407 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 78/168 (46%), Gaps = 17/168 (10%) Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKI 197 L+ +E + + R + IL L CGLR + LT +N+ L+ + KG Sbjct: 239 ALIQCHYENENPNVRRAFILCLY--CGLRFCDVKDLTYKNVDYTNHLLKFEQNKTKGHSA 296 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 ++P + + +L P DL+ +I LP + + +++ + G+ Sbjct: 297 HSGVIIP-LNEGLLSLIGEAPEDLSSSIFNLPSYESC----------SKSVKRWVKRAGI 345 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + H RHSFA ++L+NG +++++ S+LGH L T+ YT K Sbjct: 346 NKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393 >gi|217970537|ref|YP_002355771.1| integrase [Thauera sp. MZ1T] gi|217507864|gb|ACK54875.1| integrase family protein [Thauera sp. MZ1T] Length = 394 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 75/167 (44%), Gaps = 28/167 (16%) Query: 159 ILYLLYGCGLRISEALSLTPQNIM-------DDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211 + LLY CGLRI+E + T DD L + GKG+K RIVP + ++ Sbjct: 208 LFSLLYLCGLRITEVTTNTMGCFFSRRDRNGDDLWWLEVTGKGEKTRIVPATNELMMELV 267 Query: 212 EY---YDLCPFDLNLNIQLPLFRGIRG--KPLNPG--------VFQRYIRQLRRYLGLPL 258 Y Y L P+ + PL I G + L G VF+R +++ + Sbjct: 268 RYRREYALAPYPVP-GEPTPLLLPIGGQRRALTRGAVHLVVKEVFERAAKRVEERGDEFV 326 Query: 259 S-------TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 S +AH LRH+ +++ DLR ++ LGH ++TT +Y Sbjct: 327 SRANALRAASAHWLRHTAGSNMAGAEVDLRFVRDNLGHESITTTSLY 373 >gi|47566156|ref|ZP_00237184.1| phage integrase family domain protein [Bacillus cereus G9241] gi|47556709|gb|EAL15040.1| phage integrase family domain protein [Bacillus cereus G9241] Length = 308 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 6/174 (3%) Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207 E + R+ +I+ +L G GLR SE SL +I TL + GK K +P+ V Sbjct: 133 EKTFYAYRDYSIIVVLLGTGLRQSELCSLKWTDIDFKYQTLSVFGKSRKRESIPVADKVL 192 Query: 208 KAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTL 265 + Y C + + +F K L P Q ++L + + + ++HT Sbjct: 193 MELATYKTFCEQTFVEKGLSEYVFTNRSNKQLTPNAVQNVFKRLAKIMNFKDVRLSSHTF 252 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 RH+F + +G ++Q ++ H + T+ Y + G+ + E D+ +P Sbjct: 253 RHTFCQRCIQSGMSTFAVQRLMRHSSIVVTERYAAM----WGNDLKEQNDKFNP 302 >gi|312872314|ref|ZP_07732384.1| site-specific recombinase, phage integrase family [Lactobacillus iners LEAF 2062A-h1] gi|311092137|gb|EFQ50511.1| site-specific recombinase, phage integrase family [Lactobacillus iners LEAF 2062A-h1] Length = 372 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 67/271 (24%), Positives = 117/271 (43%), Gaps = 47/271 (17%) Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSF---LKYLKKRKITTESNILNMR 117 Q I +++ +++ + K+ T+ + R + ++G+ + L Y+ SN++ Sbjct: 110 QFIDKITVVDLQKWADKKATELVAFRRVIAVMNGLFEYGMRLNYV-------SSNLVKRV 162 Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL----YLLYGC-GLRISE 172 + K + R EK NV ET A+N I+ + + C GLR SE Sbjct: 163 LIPKKTARKRRDTEK-------NVYTRKELETFLKVAKNFPIMKYTFFKILACTGLRRSE 215 Query: 173 ALSLTPQNI----------------MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 L+LT Q+I ++ Q ++ R +P+ S+RKA++EY Sbjct: 216 CLALTWQDIDFKNNLLHVNKTLAYGLNHQVIVQTPKSKKSNRKIPISSSLRKALIEYQKQ 275 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 D LF + GK L G +++++ T H RH+FAT L+S Sbjct: 276 ATHD-------KLFHTLNGKYLYLGTPNIWLKKIYDKNPDLKKITVHGFRHTFATLLISE 328 Query: 277 GG-DLRSIQSILGHFRLSTT-QIYTNVNSKN 305 +++Q ILGH + T +YT++N N Sbjct: 329 TNVKPKTVQMILGHKNIEITLNLYTHINQDN 359 >gi|253990065|ref|YP_003041421.1| type 1 fimbriae regulatory recombinase protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781515|emb|CAQ84678.1| similar to type 1 fimbriae regulatory recombinase protein fimb o escherichia coli [Photorhabdus asymbiotica] Length = 206 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 72/160 (45%), Gaps = 3/160 (1%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213 R+ ++Y+ + GLR+SEA L +I +DD+S + KG PLL KAI + Sbjct: 27 RDYCLVYMSFVHGLRVSEARHLRLSDIDLDDESLYIRRLKGGFCTNHPLLGYEIKAIKAW 86 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 ++ LF GKPL + I QL R + + + H LRH+ L Sbjct: 87 LEVRKTFRGAESDW-LFLSRYGKPLTRQRIYQLINQLGRQAKISVDSHPHMLRHACGFAL 145 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVN-SKNGGDWMME 312 G D R IQ LGH + T YT N + G W M+ Sbjct: 146 ADRGVDTRLIQDYLGHSNIRHTVRYTASNVERFHGVWSMK 185 >gi|89147388|gb|ABD62554.1| integrase [uncultured bacterium] Length = 163 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 38/64 (59%) Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 ++ QR +Q + + H LRH FATHLL+ G D+R+IQ +LGH L TT I Sbjct: 99 ISDSTVQRAFKQAVVKAKIHKHASIHCLRHRFATHLLAAGTDIRTIQLLLGHRSLQTTMI 158 Query: 298 YTNV 301 YT+V Sbjct: 159 YTHV 162 >gi|319654079|ref|ZP_08008171.1| hypothetical protein HMPREF1013_04791 [Bacillus sp. 2_A_57_CT2] gi|317394272|gb|EFV75018.1| hypothetical protein HMPREF1013_04791 [Bacillus sp. 2_A_57_CT2] Length = 368 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 63/249 (25%), Positives = 101/249 (40%), Gaps = 54/249 (21%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 +L R S IK F +YL ++I ++++ + P+ +E+ LV+ L Sbjct: 112 TLLRKSSVIKHFFRYLANKEIL-------LQDITRQMKRPKVNSEE----LVNRDLF--D 158 Query: 147 HETKWI-------DARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGD 195 HE K I D + YLL G+RI+E + N + S L++ GKG Sbjct: 159 HEVKQILAYFKKTDWFAYTLFYLLVSTGMRINELATAKWSNFRYEPSVDHFFLKVMGKGG 218 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG----------------------- 232 K+R + + V + + E +LN Q+ F G Sbjct: 219 KVRDIIIFNDVLEVVKE----NRRRKSLNTQIGTFCGTAFFPKANGKHYHTTYLSNEFTR 274 Query: 233 -IRGKPLN--PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289 + PL+ F+R L + T HT RH A + + NG D +++Q +LGH Sbjct: 275 VVNTAPLDFIQARFEREKEALEGGQSIKYRITPHTCRHYTAAYYMDNGIDPKALQDMLGH 334 Query: 290 FRLSTTQIY 298 L TT+ Y Sbjct: 335 SSLMTTERY 343 >gi|282881006|ref|ZP_06289696.1| site-specific recombinase, phage integrase family [Prevotella timonensis CRIS 5C-B1] gi|281305082|gb|EFA97152.1| site-specific recombinase, phage integrase family [Prevotella timonensis CRIS 5C-B1] Length = 407 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 14/159 (8%) Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 ++ C GL + +LTP NI +DD+ + + + + LL + K+I+ Y Sbjct: 249 FIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTNVETNVLLLDIPKSIIAKYSHK 308 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 + LF + + N Y++++ G+ + T H RH+FAT LS G Sbjct: 309 TYR-----DGKLFPILTNQKTNA-----YLKEIADICGIKKNLTFHLARHTFATMSLSKG 358 Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + S+ +LGH + TTQ+Y + +K M ++ D+ Sbjct: 359 VPMESVSKMLGHTNIKTTQLYARITNKKVEHDMEQLADK 397 >gi|168215898|ref|ZP_02641523.1| phage integrase [Clostridium perfringens NCTC 8239] gi|182382275|gb|EDT79754.1| phage integrase [Clostridium perfringens NCTC 8239] Length = 400 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 84/189 (44%), Gaps = 49/189 (25%) Query: 152 IDARNSAILYLLYGCGLRISEALSL--TPQNIMDD--------QSTLRIQGKGDK----- 196 ++ +N + L G GLR+ E L+L T N ++ +ST +I KG++ Sbjct: 203 MNNKNGMLYILALGTGLRLGEILALKWTDINFKNNYIDINKAIKSTYKIDSKGNREFQII 262 Query: 197 ---------IRIVPLLPSV--------------RKAILEYYDLCPFDLNLNIQLPLFRGI 233 IR VPL ++ R + +E Y FD NL P+ Sbjct: 263 EQQPKTKNSIRTVPLNDNLIELLQQHRKKQMIDRDSNIEIY----FDNNLVFSTPI---- 314 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 G LN ++ +++ L H LRH+FAT L NG +++Q+ILGH +S Sbjct: 315 -GNYLNESNVRKTFKRILNKCNLK-ELRFHDLRHTFATRLFENGVPPKTVQTILGHSDIS 372 Query: 294 TT-QIYTNV 301 TT IYT+V Sbjct: 373 TTLNIYTHV 381 >gi|169825501|ref|YP_001695676.1| tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41] gi|168994778|gb|ACA42317.1| Tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41] Length = 368 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 5/158 (3%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ AIL +L+G G+R +E + L +++ L + KGDK V + PS + EY Sbjct: 202 RDLAILAVLFGSGIRGNELVGLKIKDVYMKDCYLDVIRKGDKADSVAIRPSALTYLEEYL 261 Query: 215 DLCPFDLNLNIQLPLFRGIRGKP---LNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFA 270 ++ P F + P + Q IR +++Y L T H R++F+ Sbjct: 262 KQRSKLYSVKTNYP-FVFVAKSPDGTVKQMSNQTLIRLVKKYTLAYGKEITPHKARYTFS 320 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 + GG L ++ LGH + TT +YT + K D Sbjct: 321 KQYQAQGGTLIGLRDQLGHQNIETTSLYTTESMKEQKD 358 >gi|310780212|ref|YP_003968544.1| integrase family protein [Ilyobacter polytropus DSM 2926] gi|309749535|gb|ADO84196.1| integrase family protein [Ilyobacter polytropus DSM 2926] Length = 235 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/156 (22%), Positives = 68/156 (43%), Gaps = 9/156 (5%) Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKA 209 W+ R+ + + + CGLR SE S+ ++ D+ + + KG + V L Sbjct: 76 WM--RDKLLFLIAFECGLRASEVGSIKKEDFFSDKREMFCRRLKGSRNNTVKLTQDTSIL 133 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-HTLRHS 268 + + + P N +F + P+ + ++ + LP+ HT++H+ Sbjct: 134 LENFMERYP-----NDSPYIFLSRKKLPITKFTLNKICKKYFKSAALPMEKAHFHTIKHT 188 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 H+ G D++ +Q ILGH + T IY + +K Sbjct: 189 SGVHMAEEGLDIKEVQYILGHRNVDNTMIYFDFTTK 224 >gi|282877432|ref|ZP_06286255.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] gi|281300484|gb|EFA92830.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] Length = 407 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 14/159 (8%) Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 ++ C GL + +LTP NI +DD+ + + + + LL + K+I+ Y Sbjct: 249 FIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPKSIIAKYSHK 308 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 + LF + + N Y++++ G+ + T H RH+FAT LS G Sbjct: 309 TYR-----DGKLFPILTNQKTNA-----YLKEIADICGIKKNLTFHLARHTFATMSLSKG 358 Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + S+ +LGH + TTQ+Y + +K M ++ D+ Sbjct: 359 VPMESVSKMLGHTNIKTTQLYARITNKKVEHDMEQLADK 397 >gi|169350996|ref|ZP_02867934.1| hypothetical protein CLOSPI_01773 [Clostridium spiroforme DSM 1552] gi|169292058|gb|EDS74191.1| hypothetical protein CLOSPI_01773 [Clostridium spiroforme DSM 1552] Length = 340 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 66/279 (23%), Positives = 122/279 (43%), Gaps = 19/279 (6%) Query: 29 RGLSKLTLQSYECDTRQFLIFL---AFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85 R LS T++SY+ + +L F+ +KIT + + + T+ +I + + Sbjct: 27 RNLSDKTIESYKTSIKLYLRFINKEKHIINDKITFEIFSRENMTD---YIIWLKNNQASP 83 Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 +++ ++ +KSFLKY + N ++++ ++ + + E +L Sbjct: 84 KTINLRMTALKSFLKYASEEDFELTVFYNNAKSIRGQKTIKKPI-EYLKPEATKAILSAY 142 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLL 203 ++TK RN +L L+Y G R+ E L ++ D S + + GKG K+R VPL Sbjct: 143 GNDTK-KHRRNQVLLILMYDSGCRVQELSDLKVSSLHLDVSCPYITVIGKGKKLRNVPLT 201 Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP--LNPGVFQRYIRQLRRYL-----GL 256 + +Y D D +++ L + + KP L+ ++Q + + Sbjct: 202 TKTVCHLKKYLDEF-HDESIDEYL-FYSNLDNKPHQLSTDSIALILKQAVKIAREKNESV 259 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 P H +R + A L NG L I +LGH +STT Sbjct: 260 PKKVHCHMIRKTKAMDLYKNGVPLPFIMQLLGHESMSTT 298 >gi|324323967|gb|ADY25010.1| integrase family protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 390 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 66/153 (43%), Gaps = 10/153 (6%) Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 N IL L G RI E + +++ D + L++ GKG K+R + + + + I E Sbjct: 218 NYTILLALASTGARIQELCTTRVKDLHYDGKHWLKVIGKGSKVRELFISEHLYECICEMR 277 Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266 F L+ + PLF RG N + + + L TAHT R Sbjct: 278 RRRGFQTVLDRGDESPLFVNQRGNFYNSKTLSNXVTDMIKKTNLEFLQYRENPVTAHTFR 337 Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298 H+FA + G DL + LGH + TT+IY Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370 >gi|260912329|ref|ZP_05918879.1| integrase [Prevotella sp. oral taxon 472 str. F0295] gi|260633556|gb|EEX51696.1| integrase [Prevotella sp. oral taxon 472 str. F0295] Length = 410 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 14/147 (9%) Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 ++ C GL + +LTP NI +DD+ + + + + LL + K+I+ Y Sbjct: 249 FIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPKSIIAKYSHK 308 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 + LF + + N Y++++ G+ + T H RH+FAT LS G Sbjct: 309 TYR-----DGKLFPILTNQKTNA-----YLKEIADLCGVKKNLTFHLARHTFATMSLSKG 358 Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSK 304 + S+ +LGH + TTQIY + +K Sbjct: 359 VPMESVSKMLGHTNIKTTQIYARITNK 385 >gi|313896449|ref|ZP_07830000.1| site-specific recombinase, phage integrase family [Selenomonas sp. oral taxon 137 str. F0430] gi|312974873|gb|EFR40337.1| site-specific recombinase, phage integrase family [Selenomonas sp. oral taxon 137 str. F0430] Length = 331 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 60/252 (23%), Positives = 113/252 (44%), Gaps = 31/252 (12%) Query: 63 IRQLSYTEIRAFISK----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118 I +++ ++R ++S+ R K +++R LS SF +L++ +S + + Sbjct: 92 ITRITTDDLRKYLSEYQEEHRCSKSNIDNIRRILS---SFFAWLEEENYILKSPVRRIHK 148 Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178 +K + + ++ + DN ++R+ A++ LL G+R+ E + L Sbjct: 149 IKTAKVVKETYTDEALEQMRDNC----------TNSRDLAMIDLLASTGMRVGELVRLNR 198 Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI-LEYYDLCPFDLNLNIQLPLFRGIRGKP 237 ++ + + GKG K R P+ R I L+ Y D ++ LF ++ KP Sbjct: 199 SDVDFESRECIVFGKGSKER--PVYFDARTKIHLKNY----LDSRIDDNPALFVSLQ-KP 251 Query: 238 LN----PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 N GV R +R + + LG+P H R + AT + G + +Q +LGH ++ Sbjct: 252 HNRLHISGVEIR-LRDMGKKLGIP-KVHPHKFRRTLATRAIDKGMPIEQVQQLLGHSKID 309 Query: 294 TTQIYTNVNSKN 305 TT Y V+ N Sbjct: 310 TTMEYAMVDQNN 321 >gi|254884944|ref|ZP_05257654.1| transposase [Bacteroides sp. 4_3_47FAA] gi|319642539|ref|ZP_07997189.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A] gi|254837737|gb|EET18046.1| transposase [Bacteroides sp. 4_3_47FAA] gi|317385891|gb|EFV66820.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A] Length = 409 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 76/318 (23%), Positives = 138/318 (43%), Gaps = 42/318 (13%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 +GN ++ +LL +R N + + T+ +Y R F+ TE K++ Sbjct: 100 FQGNAGMQMTLLKLL-DRHNEEMKARVGVDRAPTTMSTYVYTRRTLAEFIK--TEFKVSD 156 Query: 61 QTIRQLSYTEIRAF----ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116 QL+ IR + + K+ K+ +++ LS +K + K + + + + Sbjct: 157 LAFGQLNEQFIRDYQDFCLEKK---KLAMETVRHYLSILKKICRIAYKEGHSEKYHFCHF 213 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL---YLLYGC--GLRIS 171 + K+ + P+AL+ + L D + + R S ++ L+ C G + Sbjct: 214 KLPKQKETTPKALSRENFEKLRD---------LEIPEKRRSHVITRDLFLFACYTGTAYA 264 Query: 172 EALSLTPQNIM-DDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227 +A+S+T +N+ DD+ +L ++ K D + V LLP I +Y D + ++ Sbjct: 265 DAVSITRENLFQDDEGSLWLKYRRKKTDYLGRVKLLPEALALIGKYRD--------DTRI 316 Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSI 286 LF P + + ++ LR GL H RHSFA+ + L G + +I + Sbjct: 317 TLF-----PPQDYHTLRANMKSLRLMAGLSQDLVYHMGRHSFASLVTLEEGVPIETISKM 371 Query: 287 LGHFRLSTTQIYTNVNSK 304 LGH + TTQIY V K Sbjct: 372 LGHSNIKTTQIYARVTPK 389 >gi|218232818|ref|YP_002365323.1| integrase/recombinase [Bacillus cereus B4264] gi|218160775|gb|ACK60767.1| integrase/recombinase [Bacillus cereus B4264] Length = 308 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/210 (22%), Positives = 98/210 (46%), Gaps = 9/210 (4%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 L ++SF +L K K+ ++ + N++ L+ L+ ++ L+ + + + Sbjct: 88 LRALRSFYNFLDKNKLIDKNPMKNIKLLRDRQKTIETLDNQEIEKLIKTI----RKQKTF 143 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211 + R+ IL + G+R+SE + + +++ ++ +R + K R V L + ++ L Sbjct: 144 VGFRDEVILLVFLDTGVRLSELVGINVEDVRYNKLIIR-RTKNLFERTVYLSDTTQER-L 201 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 E Y ++ N LF K LNP Q + + + + + HT RH+ A Sbjct: 202 ESYIKVRGEVATN---KLFISQDNKELNPHSIQTRLTKYGKEAKISKRVSPHTFRHTMAK 258 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 ++ +G D S+ +LGH ++ T+ Y N+ Sbjct: 259 RMIVSGLDAFSLMHLLGHTDITVTKRYVNL 288 >gi|288799612|ref|ZP_06405071.1| integrase [Prevotella sp. oral taxon 299 str. F0039] gi|288332860|gb|EFC71339.1| integrase [Prevotella sp. oral taxon 299 str. F0039] Length = 410 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 14/147 (9%) Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 ++ C GL + +LTP NI +DD+ + + + + LL + K+I+ Y Sbjct: 249 FIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPKSIIAKYSHK 308 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 + LF + + N Y++++ G+ + T H RH+FAT LS G Sbjct: 309 TYR-----DGKLFPILTNQKTNA-----YLKEIADLCGVKKNLTFHLARHTFATMSLSKG 358 Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSK 304 + S+ +LGH + TTQIY + +K Sbjct: 359 VPMESVSKMLGHTNIKTTQIYARITNK 385 >gi|145589869|ref|YP_001156466.1| phage integrase family protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048275|gb|ABP34902.1| phage integrase family protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 190 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/185 (28%), Positives = 85/185 (45%), Gaps = 21/185 (11%) Query: 132 KQALTLVDN----VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 KQA TL VL H + T+ ARN A+L + + GLR++E SL +++D + Sbjct: 2 KQAKTLTAQELRRVLDHIA--TRKHCARNRAMLLITHYAGLRVAEMASLRFADVVDAEGA 59 Query: 188 LR-------IQGKGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIR--GKP 237 ++ Q KG R V + ++K + Y + P D Q LF + Sbjct: 60 IKNEIMLRPEQAKGGDARTVFISEKLKKELSAYIKIYTPND----PQEKLFYSQKKSSDG 115 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 N ++ L + +P ++H+ R SF T+L + G +R I + GH +LS+ Q Sbjct: 116 FNANTATQFFHYLYQRAAIP-GASSHSGRRSFITNLAAKGVGVRVIMGLSGHRQLSSVQH 174 Query: 298 YTNVN 302 Y + N Sbjct: 175 YIDCN 179 >gi|190410500|ref|YP_001965320.1| putative integrase [Streptococcus thermophilus] gi|84316431|gb|ABC55707.1| putative integrase [Streptococcus thermophilus] Length = 314 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 71/285 (24%), Positives = 120/285 (42%), Gaps = 31/285 (10%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T+++Y+ RQF +LA I IRQ ++ AF + + +++ ++ Sbjct: 38 TVETYKKALRQFFNYLA--------INGIRQPQREDVLAFRDDLKASGLKPTTVQNYITA 89 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNVLLHTSHETKWI 152 + F K+ ++ + NI K N L +QA ++ ++ T Sbjct: 90 TRIFFKWTEQEGLY--PNIAEHVKGAKLDKNHKKDYLTSRQAKEVLASIETDTEE----- 142 Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKG--DKIRIVPLLPSVRK 208 RN AIL L+ GLR E ++ + + + L +QGKG +K + + V K Sbjct: 143 GLRNYAILSLMVTGGLRTIEVSRADVGDLRTVGENTVLFLQGKGREEKTEYIKISAPVEK 202 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGI----RGKPLNPGVFQRYIRQLRRYLGLPLST-TAH 263 AI Y N+ PLF RGK ++ ++ + G + TAH Sbjct: 203 AIRNYLKARG---NVEEGQPLFTSTSNNSRGKRISTRTVSAIVKNALKNAGYDSARLTAH 259 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV--NSKNG 306 +LRH+ T L G ++ +Q H L+TT IY + +KNG Sbjct: 260 SLRHTAITLALLAGREITEVQQFARHANLNTTMIYNHALDQAKNG 304 >gi|261879768|ref|ZP_06006195.1| integrase [Prevotella bergensis DSM 17361] gi|270333565|gb|EFA44351.1| integrase [Prevotella bergensis DSM 17361] Length = 407 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 14/159 (8%) Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 ++ C GL + +LTP NI +DD+ + + + + LL + ++I+ Y Sbjct: 249 FIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTNVETNVLLLDIPRSIIAKYSHK 308 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 + LF + + N Y++++ G+ + T H RH+FAT LS G Sbjct: 309 TYR-----DGKLFPILTNQKTNA-----YLKEIADICGIKKNLTFHLARHTFATMSLSKG 358 Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + S+ +LGH + TTQIY + +K M ++ D+ Sbjct: 359 VPMESVSKMLGHTNIKTTQIYARITNKKVEHDMEQLADK 397 >gi|325854096|ref|ZP_08171486.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325484207|gb|EGC87139.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 410 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 14/147 (9%) Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 ++ C GL + +LTP NI +DD+ + + + + LL + K+I+ Y Sbjct: 249 FIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPKSIIAKYSHK 308 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 + LF + + N Y++++ G+ + T H RH+FAT LS G Sbjct: 309 TYR-----DGKLFPILTNQKTNA-----YLKEIADLCGVKKNLTFHLARHTFATMSLSKG 358 Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSK 304 + S+ +LGH + TTQIY + +K Sbjct: 359 VPMESVSKMLGHTNIKTTQIYARITNK 385 >gi|300781921|ref|YP_003739156.1| phage integrase [Erwinia billingiae Eb661] gi|308186479|ref|YP_003930610.1| Tyrosine recombinase xerC [Pantoea vagans C9-1] gi|299060187|emb|CAX53378.1| phage integrase [Erwinia billingiae Eb661] gi|308056989|gb|ADO09161.1| Tyrosine recombinase xerC [Pantoea vagans C9-1] Length = 327 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 82/312 (26%), Positives = 133/312 (42%), Gaps = 40/312 (12%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 LL ER WLQ L + G ++ TL +Y R + AF ++ I + R + ++ A Sbjct: 11 LLAER--WLQLLS-DLGRAQATLTAYRNALRHYF---AFCSQNGIKPEKAR---FEDLAA 61 Query: 74 FISKRRTQ---KIGDRSLKRSLSGIK---SFLKYLKKRKIT------TESNILNMRNL-K 120 +IS + +L+ LS I+ FL YL + T + + R L Sbjct: 62 YISPQLPGMPFSAASATLQLRLSAIRLWYDFLMYLDLCTVNPLPRSGTPGMLSSGRGLVP 121 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 + LPR ++ Q L H + R+ +L L Y LR SE SL+ + Sbjct: 122 RVVKLPRIPDDAQ----WQCFLYHAAASP----LRDRLMLALTYYGALRRSEITSLSIDD 173 Query: 181 IMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI---- 233 +RI+ K + RIV P+V + + L ++ LFR Sbjct: 174 FDFAHRLIRIRAETTKSRRERIVCYSPAVVPVLAAH--LMQMKRTGIVRGALFRSESDRN 231 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 +G PL+ + + +R+ G+P + HT RH THL G L + + GH L+ Sbjct: 232 QGGPLSFWTWSKTVRKWALESGMP-DISTHTFRHLRLTHLARAGWKLHELATYAGHRDLT 290 Query: 294 TTQIYTNVNSKN 305 TTQIY +++ ++ Sbjct: 291 TTQIYIHLSGRD 302 >gi|196044477|ref|ZP_03111712.1| transposition regulatory protein TnpA [Bacillus cereus 03BB108] gi|196024512|gb|EDX63184.1| transposition regulatory protein TnpA [Bacillus cereus 03BB108] Length = 371 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/218 (25%), Positives = 103/218 (47%), Gaps = 31/218 (14%) Query: 93 SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152 S KSFL ++ K K +I N+ LK+ + L ++Q V VL T+ Sbjct: 143 SRYKSFLHHINKDK----PSIRNVLKLKEPRKKLKILTKEQ----VQQVLNATT------ 188 Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGKGD-----KIRIVPLLP 204 + R++ ++ LL+ GLRI E LSL ++ + D + +R+ +G+ K++ Sbjct: 189 NIRDTFLIQLLFETGLRIGEVLSLFIEDFIFDHAKGHRIRLVDRGELENGAKLKTGEREI 248 Query: 205 SVRKAILEYYD------LCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLP 257 V +++++ YD + D++ N RG GKP+ + ++L++ G+ Sbjct: 249 FVSQSLMDLYDDYLYEIMDELDVDTNFVFIKLRGENAGKPMTYSDVESLFKRLKKKTGIN 308 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 L H RH+ AT +++ +Q LGH ++ TT Sbjct: 309 LH--PHLFRHTHATIYYQKTKNIKQVQERLGHSQIQTT 344 >gi|312887800|ref|ZP_07747387.1| integrase family protein [Mucilaginibacter paludis DSM 18603] gi|311299619|gb|EFQ76701.1| integrase family protein [Mucilaginibacter paludis DSM 18603] Length = 409 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 18/148 (12%) Query: 162 LLYGC--GLRISEALSLTPQNIM-----DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 L+ C GL + ++LT NI+ +D Q +RI PLLP + I +Y Sbjct: 253 FLFSCYTGLAYIDTMNLTAGNIVKGIDGNDWLITSRQKTDTDVRI-PLLPQAEELIKKYQ 311 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL- 273 D P +N P+ I + N Y++++ + + T H RH+FAT + Sbjct: 312 D-HPKAVNHGTLFPV---ISNQKTNA-----YLKEIADLCNINKAITFHIARHTFATTIT 362 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 LSNG + S+ +LGH + +TQ+Y V Sbjct: 363 LSNGVPIESVSKMLGHTTIRSTQVYAKV 390 >gi|254168847|ref|ZP_04875688.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] gi|254169391|ref|ZP_04876219.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] gi|197621670|gb|EDY34257.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] gi|197622284|gb|EDY34858.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] Length = 299 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/210 (26%), Positives = 87/210 (41%), Gaps = 37/210 (17%) Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETK---WI-------------------DARNSAIL 160 N +ALN A D L + H TK WI D RN A+L Sbjct: 64 NYYVKALNRYFAFRGADIKLKYYRHRTKDTIWIPTDDEVKRILSVRWRRYDQDLRNRAML 123 Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPF 219 ++ + G+R+ E ++L ++ + L I+ K R+VP+ P V + +++Y + Sbjct: 124 HIAFSTGVRLGELIALNWADLDETNHLLEIRTEKSGGTRLVPIPPKVLELLIQYRKVRIL 183 Query: 220 -DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT---AHTLRHSFATHLLS 275 D N +F G+ N Y R++ + G +H RH A L Sbjct: 184 SDPN-----AMFTTYGGRISNA-----YARKIFKEAGERAGVKKFHSHAARHWRAVKWLE 233 Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 G L +I+ +LGH L +TQIY S N Sbjct: 234 EGLSLETIRRLLGHSSLKSTQIYLRARSVN 263 >gi|145298598|ref|YP_001141439.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449] gi|142851370|gb|ABO89691.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449] Length = 351 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 68/157 (43%), Gaps = 34/157 (21%) Query: 152 IDARNSAILYLLYGC---GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 +++ N+ +L ++ C G R SE LT + ++ T + K K R VP+ P Sbjct: 200 VESPNTDLLMVVKLCLATGARWSEVEELTQSQVSPNRVTF-TRTKSKKSRSVPISP---- 254 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-----RRYLGLPLSTTAH 263 L +QLP RG +F R R L LP H Sbjct: 255 -------------ELYVQLPRKRGR--------LFSDCYRAFEMVVERAGLELPPGQNTH 293 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 LRH+FA+H + NGG++ +Q ILGH ++ T Y + Sbjct: 294 VLRHTFASHFMMNGGNILVLQKILGHSTIAMTMRYAH 330 >gi|23455849|ref|NP_695079.1| putative integrase [Streptococcus phage O1205] gi|2444081|gb|AAC79517.1| ORF1 [Streptococcus phage O1205] Length = 359 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 7/145 (4%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 A LY++ G+R +E L LT +I D L + D +P+ K+ + L Sbjct: 191 AALYIISKTGIRFAECLGLTVDDIKRDTGMLSVNKTWDYKNNTGFMPTKTKSSIREIPLD 250 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 +N QLP R L P + + + LR+ +G + H+LRH++A++L+++ Sbjct: 251 DEFINFIDQLPPTDDGR---LLPSLSNNAVNKTLRKIVGREVR--VHSLRHTYASYLIAH 305 Query: 277 GGDLRSIQSILGHFRLSTT-QIYTN 300 DL S+ +LGH L+ T ++Y + Sbjct: 306 DIDLISVSQVLGHENLNITLEVYAH 330 >gi|171321805|ref|ZP_02910710.1| integrase family protein [Burkholderia ambifaria MEX-5] gi|171092906|gb|EDT38154.1| integrase family protein [Burkholderia ambifaria MEX-5] Length = 578 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 75/319 (23%), Positives = 130/319 (40%), Gaps = 65/319 (20%) Query: 27 IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 +ERG LS LT + D + F+ T + + +R + R F + + Sbjct: 258 VERGRALSSLTTE----DAVAYRAFIRRPTPHERWVGPVRPRGAPDWRPF-----SGGLS 308 Query: 85 DRSLKRSLSGIKSFLKYLKKRK--ITTESNILNMRNLKKSNSL--PRALNEKQAL---TL 137 RS +LS + + ++L +++ + + +R+ + +N+L A E + L T+ Sbjct: 309 ARSAAYTLSVLGALFRWLIEQRYLLANPFAGVKVRDTRGANALDTSHAFTEGEWLLVRTI 368 Query: 138 VDNVLLHT-----SHETKWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDD---QS 186 D + + + W A + ++L Y GLR SE + T +I D + Sbjct: 369 ADGLEFRKDKPSGAPASGWTPAAAQRLRFILDFGYATGLRASELVGATLGDIDTDAHGDA 428 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP------ 240 L++ GKG K V L P R A+ Y + +LP+ +R +P P Sbjct: 429 WLKVIGKGSKAARVALPPLARTALDRYL--------VARRLPVT-PVRWRPDTPLIPSLA 479 Query: 241 -------------GVFQRYIRQLRRYLGL--PL------STTAHTLRHSFATHLLSNGGD 279 V QR+ Q + P + H +RH+ ATH L+ G + Sbjct: 480 EDGAAAITSVRLWKVMQRFFAQTAALVDADNPALAQKLRQASPHWMRHTHATHALARGAE 539 Query: 280 LRSIQSILGHFRLSTTQIY 298 L +++ L H +STT IY Sbjct: 540 LTTVRDNLRHASISTTSIY 558 >gi|24217183|ref|NP_714666.1| site-specific integrase/recombinase XerD-like protein [Leptospira interrogans serovar Lai str. 56601] gi|45655681|ref|YP_003490.1| phage-related integrase/recombinase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24202229|gb|AAN51681.1| XerD-related integrase [Leptospira interrogans serovar Lai str. 56601] gi|45602652|gb|AAS72127.1| phage-related integrase/recombinase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 299 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 67/269 (24%), Positives = 125/269 (46%), Gaps = 41/269 (15%) Query: 60 IQTIRQLSYTEIRAF-----------ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT 108 I+ IRQ +Y + A+ + + +KI + L R ++ +LKKRK++ Sbjct: 18 IKIIRQRNYKKATAYTYMKYNLDFLHFADKPAEKITVKDLNR-------YMDHLKKRKVS 70 Query: 109 TESNILNMRNLK-------KSNSLP------RALNEKQALTL--VDNVLLHTSHETKWID 153 + + +N+ +LK K N R N A+T + N+L +T + Sbjct: 71 SSTIQINVSSLKMFFEDVMKMNLFQDFQRPVREYNNPNAITYKEMQNIL-----KTASSN 125 Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG-DKIRIVPLLPSVRKAILE 212 A++ + L+Y GLR+ E +SL I + +++I+ + R V + P A+++ Sbjct: 126 AKHELMCGLVYFGGLRVGELISLRWAYIDTKRKSIQIKSPILSQSRTVEI-PVELGALVK 184 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 Y+ + + N L + + + V +R I ++ + G+ T TLRHS A H Sbjct: 185 KYEREIVNSSSNTYLFPGKSLGSHTTSRNV-ERIISEIGKNSGISSPVTVFTLRHSRALH 243 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 L+++G L ++ LGH L++T+ Y V Sbjct: 244 LIADGSSLNQVKDFLGHKTLASTESYLPV 272 >gi|186687205|ref|YP_001870348.1| phage integrase family protein [Nostoc punctiforme PCC 73102] gi|186469508|gb|ACC85307.1| phage integrase family protein [Nostoc punctiforme PCC 73102] Length = 309 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 70/292 (23%), Positives = 120/292 (41%), Gaps = 43/292 (14%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 WL+ G + ++++Y+ TR+FL FL + +++++Y ++ + S Sbjct: 31 WLE------GKASSSIRAYQRYTRRFLDFLD---------KPLKKVTYEDLVEYASSFGG 75 Query: 81 QKIGDRSLKR-SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 S KR ++ KS + + K N+ K LP +NE+ L D Sbjct: 76 NA---ESTKRIYIAAAKSLISFAHKIGYLP----FNVGMALKLGELPDVINERY-LDEAD 127 Query: 140 NVLLHTSHETKWIDA----------RNSAILYLLYGCGLRISEALSLTPQNIM---DDQS 186 LL + DA RN I+ LLY GLR SE LT ++ D Sbjct: 128 IKLLVRAASKHLTDAKTPKRQYTALRNLLIIKLLYQAGLRASEICELTWGDLTPRGDSGQ 187 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 + KG K R + + P + ++E+ D N + +F +G L+ Sbjct: 188 VYVRKAKGSKNRTILIKPKLWAELIEFKD------NAHSNQAVFPSQKGGHLDRQNLHPI 241 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 ++ + GL +AH LRH+ +H + G + ++ LGH L+ T Y Sbjct: 242 VKAIALEAGLSELVSAHWLRHAHGSHAIERGTNPVLVKETLGHANLAITDRY 293 >gi|325856124|ref|ZP_08171976.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|327313880|ref|YP_004329317.1| site-specific recombinase, phage integrase family [Prevotella denticola F0289] gi|325483681|gb|EGC86647.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|326945479|gb|AEA21364.1| site-specific recombinase, phage integrase family [Prevotella denticola F0289] Length = 406 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 80/319 (25%), Positives = 138/319 (43%), Gaps = 53/319 (16%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLSYTEIRAFISKRRT 80 + + I+R L L L++Y+ L L Y ++K + I QL T I F Sbjct: 123 ERIGIDRALKTLKLRTYQ------LSLLREYVQKKYKVSDIPLSQLDNTFIEGF----EY 172 Query: 81 QKIGDRSLKRSLSGI-----KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 DR LKRS ++ ++ K+ + L + ++ PR++ + + Sbjct: 173 YLTIDRQLKRSSISSTLSTLQTIVRMAVKKGVLDFYPFLGY-SYERPKGEPRSITQDELQ 231 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGK 193 ++D E +W + R L++ + C GL IS+ +L +NI+ ++ L I+G+ Sbjct: 232 KIID-------LEIEWENYRIVRDLFV-FSCFSGLAISDVRNLREENIVLEEGELCIKGR 283 Query: 194 GDKIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL----NPGVFQRY 246 K + V +LP AI+E Y RG R + V Sbjct: 284 RMKTKTPYRVQVLPPAW-AIMERY----------------RGKRAGFVFDVPTTDVILNG 326 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 I ++R +G+ T H RH+FA+ + LS G + ++ +LGH L TTQIY V+S+ Sbjct: 327 IHHIQRNIGMETPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAAVSSER 386 Query: 306 GGDWMMEIYDQTHPSITQK 324 M ++ + + T K Sbjct: 387 IHRDMQKVQQRIQDTFTLK 405 >gi|167768479|ref|ZP_02440532.1| hypothetical protein CLOSS21_03038 [Clostridium sp. SS2/1] gi|167710003|gb|EDS20582.1| hypothetical protein CLOSS21_03038 [Clostridium sp. SS2/1] Length = 266 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 55/207 (26%), Positives = 98/207 (47%), Gaps = 21/207 (10%) Query: 19 QNW-LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI-- 75 QN+ LQ L +R +S T+ SY+ R +L +L T +I ++ F Sbjct: 15 QNYFLQRLMQQRKVSYHTVCSYKDAFRLYLRYLEDVHGISATKVSINHFDLEYLQCFCKY 74 Query: 76 --SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 KR+ + + ++ ++ IKSF++Y+ + E + ++ R L LP +E Sbjct: 75 LEEKRKNKPV---TINNRMAAIKSFMQYVAE--TAPEYSAISKRAL----MLPAQKHELP 125 Query: 134 ALTLVD---NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----DQS 186 ++ + N L+ +I AR+ +L L+Y G+R+SE L + +I + + Sbjct: 126 VMSFITKEFNALIQVCDTNTFIGARDKLMLLLMYNTGVRVSELLEIKVSDIHGADSVNHA 185 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEY 213 ++ I GKG K R VPL + K I +Y Sbjct: 186 SVIIHGKGRKQREVPLWKTTVKYINKY 212 >gi|302346838|ref|YP_003815136.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] gi|302151069|gb|ADK97330.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] Length = 410 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 14/147 (9%) Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 ++ C GL + +LTP NI +DD+ + + + + LL + K+I+ Y Sbjct: 249 FIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTNVETNVLLLDIPKSIIAKYSHK 308 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 + LF + + N Y++++ G+ + T H RH+FAT LS G Sbjct: 309 TYR-----DGKLFPILTNQKTNA-----YLKEIADLCGVKKNLTFHLARHTFATMSLSKG 358 Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSK 304 + S+ +LGH + TTQIY + +K Sbjct: 359 VPMESVSKMLGHTNIKTTQIYARITNK 385 >gi|324323824|gb|ADY24868.1| integrase family protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 390 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 66/153 (43%), Gaps = 10/153 (6%) Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 N IL L G RI E + +++ D + L++ GKG K+R + + + + I E Sbjct: 218 NYTILLALASTGARIQELCTTRVKDLHYDGKHWLKVIGKGSKVRELFISEHLYECICEMR 277 Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266 F L+ + PLF RG N + + + L TAHT R Sbjct: 278 RRRGFQTVLDRGDESPLFVNQRGNFYNSKTLSNQVTDMIKKTNLEFLQYRENPVTAHTFR 337 Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298 H+FA + G DL + LGH + TT+IY Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370 >gi|92117406|ref|YP_577135.1| phage integrase [Nitrobacter hamburgensis X14] gi|91800300|gb|ABE62675.1| phage integrase [Nitrobacter hamburgensis X14] Length = 313 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 61/285 (21%), Positives = 114/285 (40%), Gaps = 10/285 (3%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 N+ P + WL +L + G S+ T+ YE D R + A T + + + Sbjct: 19 NDSPWPTPLPFDPDSMFWLDSL-LRGGASRSTIGCYERDIRH--VSAALGTNDAAALTRL 75 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 Q I F + + ++ R S ++SF ++L + S +L+ R Sbjct: 76 NQSVLECITKFWT---ANGAAESTIFRRFSSLRSFARFLMLERSYDCSTLLSSRFPPSGR 132 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 + A++ + T++ + H W R+ A++ L GL +E +L ++ Sbjct: 133 NRREAISGEAIETILSSSTCDWDH--SWTRLRDCAVVQLAASSGLTTAELTALNRRHYDA 190 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 + +R+ G R+ + + + Y D PFDL+ PLF R L+ Sbjct: 191 RLAKVRVCGSHLHSRLGIVSREAARWLTRYLDEVPFDLSPGG--PLFVTTRRTRLSARSL 248 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288 Q R+LR+ G+ +LR++ A + +G + LG Sbjct: 249 QASFRRLRQTAGVSRHAVPSSLRNAVAEKFVRSGATPEVLAKALG 293 >gi|58616296|ref|YP_195425.1| putative site-specific recombinase [Azoarcus sp. EbN1] gi|56315757|emb|CAI10401.1| putative site-specific recombinase [Aromatoleum aromaticum EbN1] Length = 224 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 96/211 (45%), Gaps = 42/211 (19%) Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT------PQNIMDDQSTLRIQ-GKG 194 LL + T R+ IL+L + CGLR++E LT P + + +LR + KG Sbjct: 16 LLRVTETTSRHPERDVLILWLGFSCGLRVTETARLTVADVLLPSGRLKAEISLRAEITKG 75 Query: 195 DKIRIVPLL-PSVRKAILEYYDL-------CPFD------LNLNIQLPL-FRG------- 232 + R+ L P + A+ Y + C F+ LN +L L ++G Sbjct: 76 CRQRLACLAHPKLVAALERYIEWRKAKRFACTFNDRQYRGLNPASRLILTWKGGPYALDL 135 Query: 233 -----IRGKPLN---PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284 G+P+ Q YI+ L R GL L+++ H+ R +FA+ LL+ G L ++Q Sbjct: 136 KRTTNTAGEPVEYWAADSLQAYIKGLYRAAGLHLASS-HSGRRTFASRLLAVGESLETVQ 194 Query: 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 ++LGH L Y VN D + E+++ Sbjct: 195 ALLGHADLDHVMPYLEVNE----DTLREMFE 221 >gi|327536637|gb|AEA95469.1| site-specific recombinase [Salmonella enterica subsp. enterica serovar Dublin] Length = 256 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 57/226 (25%), Positives = 96/226 (42%), Gaps = 52/226 (23%) Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL------------LYGCGL 168 + SLP A++ AL L ++H + SA+L+ L+ G Sbjct: 10 QPASLPVAIDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVPDLHRKMLLATLWNTGA 69 Query: 169 RISEALSLT-------PQNIMDDQSTL------------RIQGKGDKIRIVPLLPSVRKA 209 RI+EAL+LT P +TL R+ R+VPL S + Sbjct: 70 RINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAGRMPAGQQTHRLVPLSDSWYVS 129 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG------------ 255 L+ + +++P+ R R G+ +++ R +R ++G Sbjct: 130 QLQ-------TMVATLKIPMERRNRRTGRTEKARIWEVTDRTVRTWIGEAVAAAAADGVT 182 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 183 FSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 228 >gi|300697577|ref|YP_003748238.1| integrase/recombinase protein [Ralstonia solanacearum CFBP2957] gi|299074301|emb|CBJ53848.1| putative integrase/recombinase protein [Ralstonia solanacearum CFBP2957] Length = 568 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 72/303 (23%), Positives = 117/303 (38%), Gaps = 42/303 (13%) Query: 27 IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 IERG LS LT + D + FL T + + R + + R F T + Sbjct: 258 IERGRPLSSLTTE----DAIAYRGFLRHPTPHERWVGPARPRASADWRPF-----TDGLS 308 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 RS+ SLS + + ++L +++ + ++ + AL+ A T + L+ Sbjct: 309 ARSIAYSLSVLGAMFRWLVQQRYVLANPFAGIK--VRGGGRTAALDASHAFTEGEWALVR 366 Query: 145 T-SHETKW-------IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGK 193 T + +W R +L Y GLR SE + + D+ L + GK Sbjct: 367 TIADGLEWSYGWEAPAAQRLRFVLDFAYATGLRASELIGARLSGVETDRQGDHWLSLVGK 426 Query: 194 GDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 G + V L P R A+ Y L N Q PL + P R + Sbjct: 427 GGRAGKVALPPLARTALDRYLVERGLPVTRARWNPQTPLIGALGLDPDGGITGSRLWSVV 486 Query: 251 RRYLGLPLS---------------TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 RR+ + + H +RH+ A+H L+ G +L +++ L H +STT Sbjct: 487 RRFFWAAANIIEGDHTVLAEKLRKASPHWMRHTHASHALARGAELTTVRDNLRHASISTT 546 Query: 296 QIY 298 IY Sbjct: 547 SIY 549 >gi|260855535|ref|YP_003229426.1| putative integrase [Escherichia coli O26:H11 str. 11368] gi|312966869|ref|ZP_07781087.1| integrase [Escherichia coli 2362-75] gi|257754184|dbj|BAI25686.1| putative integrase [Escherichia coli O26:H11 str. 11368] gi|312288333|gb|EFR16235.1| integrase [Escherichia coli 2362-75] Length = 311 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 19/140 (13%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221 +L G R E +L + ++ + T + K K R VP+ S+ + I + F Sbjct: 175 ILLSTGARWGEVAALEQRRVLHCRITFS-KTKNSKNRTVPISESLFEKIKKRGGKLVFP- 232 Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281 + PL R + K + P V P H LRH+FA+H + NGG++ Sbjct: 233 --TLDYPLVRDVI-KTVAPDV--------------PDGQAVHALRHTFASHFMMNGGNIL 275 Query: 282 SIQSILGHFRLSTTQIYTNV 301 ++Q ILGH ++ TT IY ++ Sbjct: 276 TLQKILGHAKIQTTMIYAHL 295 >gi|260435817|ref|ZP_05789787.1| site-specific recombinase, phage integrase family [Synechococcus sp. WH 8109] gi|260413691|gb|EEX06987.1| site-specific recombinase, phage integrase family [Synechococcus sp. WH 8109] Length = 318 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 67/292 (22%), Positives = 129/292 (44%), Gaps = 28/292 (9%) Query: 26 EIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK--- 82 + R S T++ Y+ + R+F + + +R+++ + ++S+ R Q Sbjct: 36 QCSRSGSSETVRGYKREIREF----TRWRDRNHPHLHLREINAAFCQDWVSQLREQVDAG 91 Query: 83 -IGDRSLKRSLSGIKSFLKYLKKRKITTESNI----LNMRNLKKSNSLPRALNEKQALTL 137 + R+ R ++ I S ++ + + + + + R+L ++ R ++E+ TL Sbjct: 92 LMKPRTFNRRIAAISSLYRWASEASRSPVTGVPRNPVPTRSLLQAPKTTRGISEEAVATL 151 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGD 195 + ++ + T R+ A++ Y G R+SE + ++I +DD + + GKG Sbjct: 152 L--AVIRQAFSTDRNSRRDYALIKGSYLLGCRVSEIAVIRWKDIEALDDGGQIHLFGKGS 209 Query: 196 KIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKP-LNPGVFQRYIRQLRRY 253 K R V V A L+ + +L D + F RG+ L R+ R Sbjct: 210 KRRTV----RVSAATLDLFQELGRGDAEAFV----FPSPRGEGHLTRQAIGDVCRKWGRA 261 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 G + H LRHS ATH + G D+ ++Q+ LGH +TT Y N ++ Sbjct: 262 AGFHVHP--HQLRHSHATHAVQRGVDVFTLQATLGHSSSATTGHYVASNPRD 311 >gi|228474636|ref|ZP_04059367.1| integrase [Staphylococcus hominis SK119] gi|228271299|gb|EEK12667.1| integrase [Staphylococcus hominis SK119] Length = 404 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 23/167 (13%) Query: 167 GLRISEALSLTPQNIMDDQSTLRIQG----------KGDK--------IRIVPLLPS--- 205 GLRI E L+L P+NI + I G +G K R + + Sbjct: 231 GLRIGELLALQPENIDFKNKKIEIDGTIAWITKDGVRGFKDTTKTEASYRTISITTRSCE 290 Query: 206 -VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 +RK +LE +D N + +F +G P+ I+ + +G+ + HT Sbjct: 291 ILRKVMLENKKSTKWDSNFKERNFIFTNSKGSPMPLSSINANIKNAAKNVGIEKDISTHT 350 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310 +RHS + L G LR+I +GH TT QIY++V + D M Sbjct: 351 MRHSHISLLSQLGVSLRAIMDRVGHKDYKTTLQIYSHVTEQMDKDMM 397 >gi|304382579|ref|ZP_07365073.1| integrase [Prevotella marshii DSM 16973] gi|304336204|gb|EFM02446.1| integrase [Prevotella marshii DSM 16973] Length = 417 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 65/262 (24%), Positives = 115/262 (43%), Gaps = 31/262 (11%) Query: 53 YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112 Y E I IQ + + ++ + +K + K+ + LS + S LK L KR+I Sbjct: 153 YRVEDILIQKVDAVLVKDLEDYFAKEKGFKLNTSA--GYLSILASLLKDLHKRRIIDTYP 210 Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRI 170 +N +++ PR + ++ V + E + + + + L+ C GL Sbjct: 211 FIN-HSIRWEVGTPRYITREE----VRRIAALGEDELQGYEKVSRDMF--LFSCLTGLAY 263 Query: 171 SEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227 ++ LT Q+I + I+ K + +PLLP AI+E Y I Sbjct: 264 TDVYHLTEQHIFHEAGMTWIRKPRVKTGNVCHIPLLPEA-AAIIERYR--------GIHT 314 Query: 228 PLFRGIRGK----PLNPGV--FQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDL 280 FR K P+ PG +++++ R G+ + T H RH+FA+ + LS G + Sbjct: 315 RAFRHEPPKGYLLPI-PGCDTVNIHLKKIARLCGIQKTLTYHMARHTFASQMTLSEGVSI 373 Query: 281 RSIQSILGHFRLSTTQIYTNVN 302 S+ +LGH ++ TTQ+Y + Sbjct: 374 ESVSKMLGHSQIKTTQVYAETS 395 >gi|172058626|ref|YP_001815086.1| integrase family protein [Exiguobacterium sibiricum 255-15] gi|171991147|gb|ACB62069.1| integrase family protein [Exiguobacterium sibiricum 255-15] Length = 287 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 74/285 (25%), Positives = 121/285 (42%), Gaps = 39/285 (13%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + L +E S LT ++Y D R F E I I ++ + +I+ Sbjct: 7 ERLLAIIEQSPSYSPLTRKAYRVDARHFCTH-----AETIDIPSMHR--------YITLL 53 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR---ALNEKQAL 135 + Q ++ R + + + L K + SN L+ R K + LP+ A + +A Sbjct: 54 K-QTYAPTTVSRRIHALATLFDALVAEK-SIPSNPLS-RIKKPTRPLPKHRTAFSYTEAR 110 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKG 194 ++++ + ET + +LL GLR +EA L +I + ++ GKG Sbjct: 111 SVIETL----QDETMY------TFYFLLLHTGLRFNEARQLCRTDIDLTERQLFVRHGKG 160 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 K R VPL + ++ Y DL P PLF+ G L+P +R +R L Sbjct: 161 QKTRYVPLHDELVTVLIRYLDLQP-------NGPLFQNTAGGLLDPNQTRRQLRLASEQL 213 Query: 255 GLPLSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRLSTTQIY 298 L + H LR +FAT + + DL ++ +LGH TTQ Y Sbjct: 214 -LKRTLRPHDLRVTFATTIYREHRADLLTVMRLLGHSDAKTTQQY 257 >gi|163733376|ref|ZP_02140819.1| phage integrase family protein [Roseobacter litoralis Och 149] gi|161393164|gb|EDQ17490.1| phage integrase family protein [Roseobacter litoralis Och 149] Length = 412 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 71/299 (23%), Positives = 125/299 (41%), Gaps = 16/299 (5%) Query: 11 SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE 70 S ++ K + WL+ ERGL+ ++++ + R F + T + +LS + Sbjct: 111 SRDVCKVYERWLRT---ERGLATPSIKALMWEARHFCKWFIARTGKA----DFAELSVPD 163 Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRA 128 I A++ R + +SLK ++ FL++L + K+ + S+ + L +P Sbjct: 164 IDAYLDSR-APGLTRKSLKDVAERLRGFLRHLHRSKLHGQDLSSHVIAPLLYAYEGIPSI 222 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 L +Q + NVL + + R+ AIL LL GLR E L +I TL Sbjct: 223 LTPEQ----IANVLKVAGQDVSPLGLRDHAILQLLAKYGLRSGEVGRLQIDDIDWRADTL 278 Query: 189 RIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 R+Q K + ++PL+ +V AIL Y ++ R G++ Sbjct: 279 RVQRSKSNTRAVLPLMETVGDAILRYLREGRPRTDVRTVFLRSRAPYQAMTAGGLYGVVK 338 Query: 248 RQLRRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 R+L P+ H RH+ A +L + I +LGH T Y + +++ Sbjct: 339 RRLAAAGIEPVGKRGPHIFRHARAVSMLRASTPRKIIGDVLGHRSSEATTPYLKLATED 397 >gi|42519103|ref|NP_965033.1| site-specific tyrosine recombinase XerS [Lactobacillus johnsonii NCC 533] gi|41583390|gb|AAS08999.1| hypothetical protein LJ_1177 [Lactobacillus johnsonii NCC 533] gi|329667361|gb|AEB93309.1| site-specific tyrosine recombinase XerS [Lactobacillus johnsonii DPC 6026] Length = 356 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 79/349 (22%), Positives = 149/349 (42%), Gaps = 54/349 (15%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYT 54 ME N E++ EL ++++ + S T Y + R+F +L + + Sbjct: 1 METNKYLELIKQEL-ANMPDFVKEYNLGTSHSLTTTYQYLTEIRRFFDWLRQNNIASVSS 59 Query: 55 EEKITIQTIRQLSYTEIRAFISK-RRTQKIGDR-----SLKRSLSGIKSFLKYLKKRKIT 108 ++I + T+ L ++ +I + T+ R ++ RS++ ++S K+L IT Sbjct: 60 NKEIEVTTLENLQRNDVMLYIHHLKHTKNQQGRLNSPTTINRSINALRSLYKFLT---IT 116 Query: 109 TESN----ILNMRNLKKSNSL--PRALNEK---------------QALTLVDNVLLHTSH 147 +++N + + K NSL + LN + Q L ++N +H + Sbjct: 117 SDNNHGEPYFDRNVMLKINSLNDTKTLNYRAHVLESHMYMGDLKYQFLDFIENEYIHKCN 176 Query: 148 ET-----KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG---DKIRI 199 + K R+ AI+ L+ G G+R+SE + + +NI + L + KG D + I Sbjct: 177 KQSLPAFKKNHERDMAIIALILGTGIRVSECVGVNMRNINLKDAMLDVTRKGGQKDSVPI 236 Query: 200 ----VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 +P L R+ ++Y D+ L + G + K + ++ + + G Sbjct: 237 AEWTIPYLKKYREIRADHYHAEKEDIAF--FLTRWHG-KTKRITTNAVEKMVNKYSAAFG 293 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 PL T H LRH+ A+ L D + LG + T +YT+V+ K Sbjct: 294 KPL--TPHKLRHTLASELYEVTKDQVLVAQQLGQKGTTATDLYTHVDQK 340 >gi|257466156|ref|ZP_05630467.1| putative integrase [Fusobacterium gonidiaformans ATCC 25563] gi|315917313|ref|ZP_07913553.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC 25563] gi|313691188|gb|EFS28023.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC 25563] Length = 329 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 57/252 (22%), Positives = 116/252 (46%), Gaps = 27/252 (10%) Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDR----SLKRSLSGIKSFLKYLKKRKITTESNILNM 116 + I+ + ++R+++++ +++K R +++R LS SF +L+ +S + + Sbjct: 88 KEIKYIVTDDLRSYLTEYQSEKQSSRVTIDNIRRILS---SFFSWLEDEDYILKSPVRRI 144 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 +K +S+ ++++ + D + HE R+ A++ +L G+R+ E + L Sbjct: 145 HKVKTISSIKDTYSDEELERMRD-----SCHEI-----RDLALIDILASTGMRVGELVLL 194 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 Q+I + + GKGDK R+V + + Y + ++ LF +R K Sbjct: 195 NRQDIKFGERECIVFGKGDKERVVYFDARTKIHLQNY-----LNTRVDSNPALFVALR-K 248 Query: 237 PLNP---GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 P N G + +R++ + L + H R + AT + G + +Q +LGH R+ Sbjct: 249 PYNRLTIGGIEVRLRKIGKELEIN-KVHPHKFRRTLATIAIDKGMPIEQLQKLLGHRRID 307 Query: 294 TTQIYTNVNSKN 305 TT Y V N Sbjct: 308 TTLQYAMVKQSN 319 >gi|86605557|ref|YP_474320.1| phage integrase family site specific recombinase [Synechococcus sp. JA-3-3Ab] gi|86554099|gb|ABC99057.1| site-specific recombinase, phage integrase family [Synechococcus sp. JA-3-3Ab] Length = 309 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 53/160 (33%), Positives = 71/160 (44%), Gaps = 23/160 (14%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAIL 211 R +A++ LL CGLR E L LT Q+ I + S L ++ GKG K R V + + + + Sbjct: 139 RYAALIRLLLECGLRAQELLDLTVQDFQISPEGSLLEVRCGKGSKPRAVAVGDPLSELLQ 198 Query: 212 EYYD-----LCPFDLNLNIQLPLF------RGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 +Y P D PLF RG+PL + + +L P Sbjct: 199 QYLSRERGPCAPTD-------PLFVSQSRCPAYRGRPLTYDGLRHIVLKLTE--PEPGHQ 249 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 T H RHSFAT LL G IQ +LGH + T YT Sbjct: 250 TPHQFRHSFATLLLDRGVAPEHIQHLLGHTTAAMTMRYTQ 289 >gi|229015108|ref|ZP_04172164.1| integrase/recombinase [Bacillus mycoides DSM 2048] gi|228746161|gb|EEL96108.1| integrase/recombinase [Bacillus mycoides DSM 2048] Length = 308 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/210 (20%), Positives = 94/210 (44%), Gaps = 9/210 (4%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 L ++SF +L K K+ ++ + N++ L+ L+ ++ L+ + + + Sbjct: 88 LRALRSFYNFLDKHKLIDKNPMKNIKLLRDRQKTIETLDNQEIEKLIKTI----RKQKTF 143 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211 + R+ IL + G+R+SE + + +++ ++ L I+ + L + L Sbjct: 144 VGFRDEVILLVFLDTGVRLSELIGINVEDVRHNK--LIIRSTKNLFERTVYLSDTTQERL 201 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 E Y ++ N LF K L+P Q + + + + + HT RH+ A Sbjct: 202 ESYIKVRGEVATN---KLFISQNNKELHPHSIQTRLTKYGKEAKISKRVSPHTFRHTMAK 258 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 ++ +G D S+ +LGH ++ T+ Y N+ Sbjct: 259 RMIVSGLDAFSLMHLLGHTDITVTKRYVNL 288 >gi|189405329|ref|ZP_02814784.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC869] gi|261258240|ref|ZP_05950773.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. FRIK966] gi|189370712|gb|EDU89128.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC869] Length = 333 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 21/134 (15%) Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226 G R SEA L ++ + T ++ KG K R VP+ P L Sbjct: 202 GARWSEAEGLKQSQVLPGRITF-VKTKGKKNRTVPISP-----------------QLQAM 243 Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286 LP RG P F I+ R + LP H LRH+FA+H + GG++ +Q I Sbjct: 244 LPKKRGALFSPCYE-AFDAAIK--RAKIELPDGQLTHVLRHTFASHFMMRGGNILVLQKI 300 Query: 287 LGHFRLSTTQIYTN 300 LGH + T Y + Sbjct: 301 LGHSDIKMTMRYAH 314 >gi|168789851|ref|ZP_02814858.1| integrase [Escherichia coli O157:H7 str. EC869] gi|261227840|ref|ZP_05942121.1| phage integrase [Escherichia coli O157:H7 str. FRIK2000] gi|261258426|ref|ZP_05950959.1| putative integrase [Escherichia coli O157:H7 str. FRIK966] gi|189370614|gb|EDU89030.1| integrase [Escherichia coli O157:H7 str. EC869] gi|323163435|gb|EFZ49261.1| integrase [Escherichia coli E128010] Length = 312 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 19/140 (13%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221 +L G R E +L + ++ + T + K K R VP+ S+ + I + F Sbjct: 175 ILLSTGARWGEVAALEQRRVLHCRITFS-KTKNSKNRTVPISESLFEKIKKRGGKLVFP- 232 Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281 + PL R + K + P V P H LRH+FA+H + NGG++ Sbjct: 233 --TLDYPLVRDVI-KTVAPDV--------------PDGQAVHALRHTFASHFMMNGGNIL 275 Query: 282 SIQSILGHFRLSTTQIYTNV 301 ++Q ILGH ++ TT IY ++ Sbjct: 276 TLQKILGHAKIQTTMIYAHL 295 >gi|209516757|ref|ZP_03265609.1| integrase family protein [Burkholderia sp. H160] gi|209502874|gb|EEA02878.1| integrase family protein [Burkholderia sp. H160] Length = 315 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 53/221 (23%), Positives = 93/221 (42%), Gaps = 16/221 (7%) Query: 94 GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153 ++ F +Y+ R S + + +P + + L+ + + + ++ Sbjct: 69 ALRGFYRYVISRGYVQSSPLPKAIPKRPPPFVPYIYSRDELKALLCACMTYQKNRSRIDP 128 Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILE 212 +L LLYG GLR+ EA+ LT ++ S L + Q K K R+VP + A+ Sbjct: 129 QMMQTLLVLLYGTGLRVREAIRLTCADVDISSSCLIVRQTKFRKTRLVPFGAEICGALKR 188 Query: 213 YYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA------HTL 265 + D L Q F G+PL + ++R+ G+ + A H L Sbjct: 189 HADRRERGALPEQAQTLFFVSRDGRPLCQSTIEDVFGRIRKEAGVRRTDGARYQPRLHDL 248 Query: 266 RHSFATHLL----SNGGDLRS----IQSILGHFRLSTTQIY 298 RH+FA H L G D+++ + + LGH L+ T +Y Sbjct: 249 RHTFAVHRLIAWYREGADVQTWLPVLSTYLGHTYLAATSVY 289 >gi|148589|gb|AAA24900.1| Protein D [Plasmid F] Length = 256 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 57/226 (25%), Positives = 96/226 (42%), Gaps = 52/226 (23%) Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL------------LYGCGL 168 + SLP A++ AL L ++H + SA+L+ L+ G Sbjct: 10 QPASLPVAIDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVPDLHRKMLLATLWNTGA 69 Query: 169 RISEALSLT-------PQNIMDDQSTL------------RIQGKGDKIRIVPLLPSVRKA 209 RI+EAL+LT P +TL R+ R+VPL S + Sbjct: 70 RINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAGRMPAGQQTHRLVPLSDSWYVS 129 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG------------ 255 L+ + +++P+ R R G+ +++ R +R ++G Sbjct: 130 QLQ-------TMVAQLKIPMERRNRRTGRTEKARIWEVTDRTVRTWIGEAVAAAAADGVT 182 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 183 FSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 228 >gi|271499297|ref|YP_003332322.1| integrase family protein [Dickeya dadantii Ech586] gi|270342852|gb|ACZ75617.1| integrase family protein [Dickeya dadantii Ech586] Length = 363 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 61/136 (44%), Gaps = 25/136 (18%) Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226 G R SEA L+ Q + + T + KG K R VP+ E YD P Sbjct: 207 GARWSEAEGLSGQQVTPYRITY-TRTKGKKNRTVPI-------SRELYDEIPRK------ 252 Query: 227 LPLFRGIRGKPLNPG--VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284 GK +P F+R I R + LP H LRH+FA+H + NGG++ ++ Sbjct: 253 -------SGKLFSPCRKAFERAIN--RTGIQLPDGQCTHVLRHTFASHFMMNGGNILVLR 303 Query: 285 SILGHFRLSTTQIYTN 300 ILGH + T IY + Sbjct: 304 DILGHADIKMTMIYAH 319 >gi|115360449|ref|YP_777586.1| phage integrase family protein [Burkholderia ambifaria AMMD] gi|115285777|gb|ABI91252.1| phage integrase family protein [Burkholderia ambifaria AMMD] Length = 578 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 75/319 (23%), Positives = 129/319 (40%), Gaps = 65/319 (20%) Query: 27 IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 +ERG LS LT + D + F+ T + + +R + R F + + Sbjct: 258 VERGRALSSLTTE----DAVAYRAFIRRPTPHERWVGPVRPRGAPDWRPF-----SGGLS 308 Query: 85 DRSLKRSLSGIKSFLKYLKKRK--ITTESNILNMRNLKKSNSL--PRALNEKQAL---TL 137 RS +LS + + ++L +++ + + +R+ + +N+L A E + L T+ Sbjct: 309 ARSAAYTLSVLGALFRWLIEQRYLLANPFAGVKVRDTRGANALDTSHAFTEGEWLLVRTI 368 Query: 138 VDNVLLHTSHETK-----WIDARNSAILYLL---YGCGLRISEALSLTPQNIMDD---QS 186 D + + W A + ++L Y GLR SE + T +I D + Sbjct: 369 ADGLEFRKDRPSGAPGSGWTPAAAQRLRFILDFGYATGLRASELVGATLGDIDTDAHGDA 428 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP------ 240 L++ GKG K V L P R A+ Y + +LP+ +R +P P Sbjct: 429 WLKVIGKGSKAARVALPPLARTALDRYL--------VARRLPVT-PVRWRPDTPLIPSLA 479 Query: 241 -------------GVFQRYIRQLRRYLGL--PL------STTAHTLRHSFATHLLSNGGD 279 V QR+ Q + P + H +RH+ ATH L+ G + Sbjct: 480 EDGAAAITSMRLWKVMQRFFAQTAALVDADNPALAQKLRQASPHWMRHTHATHALARGAE 539 Query: 280 LRSIQSILGHFRLSTTQIY 298 L +++ L H +STT IY Sbjct: 540 LTTVRDNLRHASISTTSIY 558 >gi|132266|sp|P06615|REDF_ECOLI RecName: Full=Resolvase; AltName: Full=Protein D gi|41210|emb|CAA28640.1| unnamed protein product [Escherichia coli] Length = 268 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 57/226 (25%), Positives = 96/226 (42%), Gaps = 52/226 (23%) Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL------------LYGCGL 168 + SLP A++ AL L ++H + SA+L+ L+ G Sbjct: 22 QPASLPVAIDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVPDLHRKMLLATLWNTGA 81 Query: 169 RISEALSLT-------PQNIMDDQSTL------------RIQGKGDKIRIVPLLPSVRKA 209 RI+EAL+LT P +TL R+ R+VPL S + Sbjct: 82 RINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAGRMPAGQQTHRLVPLSDSWYVS 141 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG------------ 255 L+ + +++P+ R R G+ +++ R +R ++G Sbjct: 142 QLQ-------TMVAQLKIPMERRNRRTGRTEKARIWEVTDRTVRTWIGEAVAAAAADGVT 194 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 195 FSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240 >gi|15802318|ref|NP_288344.1| integrase for prophage CP-933T [Escherichia coli O157:H7 EDL933] gi|15831871|ref|NP_310644.1| integrase [Escherichia coli O157:H7 str. Sakai] gi|187776266|ref|ZP_02801548.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4196] gi|188024649|ref|ZP_02772961.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4113] gi|189404109|ref|ZP_02787302.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4501] gi|189406250|ref|ZP_02827228.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC508] gi|194430421|ref|ZP_03062905.1| integrase for prophage CP-933T [Escherichia coli B171] gi|208810345|ref|ZP_03252221.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4206] gi|208816796|ref|ZP_03257916.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4045] gi|208819521|ref|ZP_03259841.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4042] gi|209395701|ref|YP_002270994.1| integrase family protein [Escherichia coli O157:H7 str. EC4115] gi|217328885|ref|ZP_03444966.1| integrase family protein [Escherichia coli O157:H7 str. TW14588] gi|254793532|ref|YP_003078369.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. TW14359] gi|331683415|ref|ZP_08384016.1| integrase [Escherichia coli H299] gi|12515975|gb|AAG56898.1|AE005412_8 integrase for prophage CP-933T [Escherichia coli O157:H7 str. EDL933] gi|13362085|dbj|BAB36040.1| putative integrase [Escherichia coli O157:H7 str. Sakai] gi|187768066|gb|EDU31910.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4196] gi|188017419|gb|EDU55541.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4113] gi|189367364|gb|EDU85780.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4501] gi|189375751|gb|EDU94167.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC508] gi|194411527|gb|EDX27865.1| integrase for prophage CP-933T [Escherichia coli B171] gi|195182940|dbj|BAG66506.1| putative integrase [Escherichia coli O111:H-] gi|208724861|gb|EDZ74568.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4206] gi|208731139|gb|EDZ79828.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4045] gi|208739644|gb|EDZ87326.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4042] gi|209157101|gb|ACI34534.1| integrase family protein [Escherichia coli O157:H7 str. EC4115] gi|217318232|gb|EEC26659.1| integrase family protein [Escherichia coli O157:H7 str. TW14588] gi|254592932|gb|ACT72293.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. TW14359] gi|309702157|emb|CBJ01472.1| phage integrase [Escherichia coli ETEC H10407] gi|323180706|gb|EFZ66251.1| integrase [Escherichia coli 1180] gi|326342290|gb|EGD66071.1| Integrase [Escherichia coli O157:H7 str. 1044] gi|326343839|gb|EGD67601.1| Integrase [Escherichia coli O157:H7 str. 1125] gi|331079630|gb|EGI50827.1| integrase [Escherichia coli H299] Length = 333 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 21/134 (15%) Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226 G R SEA L ++ + T ++ KG K R VP+ P L Sbjct: 202 GARWSEAEGLKQSQVLPGRITF-VKTKGKKNRTVPISP-----------------QLQAM 243 Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286 LP RG P F I+ R + LP H LRH+FA+H + GG++ +Q I Sbjct: 244 LPKKRGALFSPCYE-AFDAAIK--RAKIELPDGQLTHVLRHTFASHFMMRGGNILVLQKI 300 Query: 287 LGHFRLSTTQIYTN 300 LGH + T Y + Sbjct: 301 LGHSDIKMTMRYAH 314 >gi|311741847|ref|ZP_07715658.1| phage-related integrase [Aeromicrobium marinum DSM 15272] gi|311314853|gb|EFQ84759.1| phage-related integrase [Aeromicrobium marinum DSM 15272] Length = 425 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 75/358 (20%), Positives = 140/358 (39%), Gaps = 100/358 (27%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + WL LE +R L+ T SY R++++ I + + L+ ++RA Sbjct: 94 EQWL--LEQQRRLASHTWGSYAGTVRKWIV-------PTIGHKRLANLTPGDLRAVT--- 141 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R ++ + +L+ + +K L+ +I + ++K P +++ A+ L Sbjct: 142 RAEEQAGKKPASTLATRRILVKMLRDARIEGHPIPARIFDVKAHTPPP---SDRDAIPLA 198 Query: 139 D-----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 D N L H ++WI + + G+R E L LT ++ D+ + I+ + Sbjct: 199 DAIAIMNASLTLPHTSRWI---------VAFFEGMRQGEVLGLTWDHVDLDRGIIDIEYQ 249 Query: 194 GDKI------------------------------------RIVPLLPSVRKAILEYYDLC 217 D + RI+P++ A+ ++ +L Sbjct: 250 LDSLAYLDREAGTFRHPDRITPKQLWRSYHLVPPKSKSGRRIIPIVGPALAALQQWRELA 309 Query: 218 PFDLNLNIQLPLFRGI-----RGKPLNPG--------------VFQRYIRQLRRYLGLPL 258 P P G+ G+P+NP V Q RRY G Sbjct: 310 P---------PSPHGLVWPRPDGRPINPQHDTAEWIDLQDRAQVASVDGNQGRRYAG--- 357 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 H +RH+ AT LL G D R++++ILGH + T++ Y +V + + M ++ D+ Sbjct: 358 ----HEIRHTTATILLEIGADPRTVEAILGHSSIVTSRGYQHVRDELSREAMQKVSDR 411 >gi|253801000|ref|YP_003034001.1| site-specific recombinase [Escherichia coli Vir68] gi|253721177|gb|ACT33486.1| site-specific recombinase [Escherichia coli Vir68] Length = 268 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 57/226 (25%), Positives = 96/226 (42%), Gaps = 52/226 (23%) Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL------------LYGCGL 168 + SLP A++ AL L ++H + SA+L+ L+ G Sbjct: 22 QPASLPVAIDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVPDLHRKMLLATLWNTGA 81 Query: 169 RISEALSLT-------PQNIMDDQSTL------------RIQGKGDKIRIVPLLPSVRKA 209 RI+EAL+LT P +TL R+ R+VPL S + Sbjct: 82 RINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAGRMPAGQQTHRLVPLSDSWYVS 141 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG------------ 255 L+ + +++P+ R R G+ +++ R +R ++G Sbjct: 142 QLQ-------TMVATLKIPMERRNRRTGRTEKARIWEVTDRTVRTWIGEAVAAAAADGVT 194 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 195 FSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240 >gi|304383186|ref|ZP_07365659.1| probable integrase [Prevotella marshii DSM 16973] gi|304335657|gb|EFM01914.1| probable integrase [Prevotella marshii DSM 16973] Length = 407 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 21/169 (12%) Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIR 198 L+ ++ + + R + IL L CGLR + LT +NI L+ + KG Sbjct: 240 LIQCHYDNENPNVRRAFILCLY--CGLRFCDVKDLTYKNIDYTNHLLKFEQNKTKGHSAN 297 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL---G 255 ++P + +L P DL+ +I N ++ + ++R++ G Sbjct: 298 SGVVIP-LNDGLLSLIGEAPEDLDTSI------------FNLPTYESCCKSVKRWVKRAG 344 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + + H RHSFA ++L+NG +++++ S+LGH L T+ YT K Sbjct: 345 INKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393 >gi|225374497|ref|ZP_03751718.1| hypothetical protein ROSEINA2194_00112 [Roseburia inulinivorans DSM 16841] gi|225213735|gb|EEG96089.1| hypothetical protein ROSEINA2194_00112 [Roseburia inulinivorans DSM 16841] Length = 106 Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 40/60 (66%) Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 ++ R+ + G+ + H LRHSFA+HL +G D++ IQ++LGH +T++Y +V++K Sbjct: 32 QFFRESAKRAGIQKHVSTHCLRHSFASHLFESGCDVKYIQALLGHRDPKSTEVYLHVSNK 91 >gi|229012556|ref|ZP_04169730.1| Transposition regulatory protein TnpA [Bacillus mycoides DSM 2048] gi|228748716|gb|EEL98567.1| Transposition regulatory protein TnpA [Bacillus mycoides DSM 2048] Length = 373 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 101/224 (45%), Gaps = 43/224 (19%) Query: 93 SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152 S KSFL ++ K K I N+ LK+ L ++Q V V+ T+ Sbjct: 143 SRYKSFLHHVNKDK----PAIRNVLKLKEPRKKVNTLTKEQ----VQQVIQATT------ 188 Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV--------PLLP 204 + R++ ++ LL+ GLRI EALSL ++ + D KG +IR+V +L Sbjct: 189 NIRDTFLIQLLFETGLRIGEALSLFMEDFIFDHQ------KGHRIRLVNRGELENGAMLK 242 Query: 205 S------VRKAILEYYD------LCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLR 251 + V +++++ YD + + + N RG GKP+ + ++L+ Sbjct: 243 TGEREIFVSQSLMDLYDDYLYEVIDELEFDSNFVFVKLRGKDIGKPMEYWNVEALFKRLK 302 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 + G+ L H RH+ AT D++ +Q LGH ++ TT Sbjct: 303 KKTGINLH--PHLFRHTHATIYYQKTKDIKQVQERLGHSQIQTT 344 >gi|111025561|ref|YP_707981.1| integrase/recombinase [Rhodococcus jostii RHA1] gi|110824540|gb|ABG99823.1| probable integrase/recombinase [Rhodococcus jostii RHA1] Length = 384 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 91/224 (40%), Gaps = 17/224 (7%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRN---LKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 L+ I+SF +Y + T ++ ++ +K + P + +QA+ LL Sbjct: 167 LACIRSFFEYAATAEPTLAIHLADLAGIPLMKAPATKPVSHMSQQAI----KALLAQPDP 222 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 R+ + L+Y R +E LS ++ + T+ + GKG K R +P+ Sbjct: 223 IIRTGLRDQFFMILMYDTAARDAEMLSAAIGDLDAQRLTIDLLGKGSKPRRIPITKETAA 282 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGI---RGKPLNPGVFQRYIRQL-----RRYLGLPLST 260 Y F + + PLF I R ++ R IRQ R+ +P Sbjct: 283 HYRRY--TAAFHPDPQLGDPLFYTIHSHRKTRMSDDNAARIIRQHAQAAHRKCAEVPAGA 340 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 H LRHS A HL G L + LGH TT IY + ++K Sbjct: 341 HPHMLRHSRAMHLYQAGMPLALLTEWLGHADPETTLIYAHADTK 384 >gi|9507757|ref|NP_061423.1| site-specific recombinase [Plasmid F] gi|58383299|ref|YP_194871.1| resolvase protein D [Salmonella enterica subsp. enterica serovar Typhimurium] gi|187736744|ref|YP_001816482.1| ResD [Escherichia coli 1520] gi|256367711|ref|YP_003108268.1| ResD [Escherichia coli] gi|291289364|ref|YP_003517696.1| resolvase [Klebsiella pneumoniae] gi|302595370|ref|YP_003829232.1| site-specific resolvase; cleaves at rfsF site [Escherichia coli] gi|302595489|ref|YP_003829107.1| site-specific resolvase; cleaves at rfsF site [Escherichia coli] gi|309797304|ref|ZP_07691698.1| site-specific recombinase, phage integrase family [Escherichia coli MS 145-7] gi|8918867|dbj|BAA97914.1| resolvase [Plasmid F] gi|37962778|gb|AAR05725.1| resolvase protein D [Salmonella enterica subsp. enterica serovar Typhimurium] gi|62550777|emb|CAH64700.1| resolvase [uncultured bacterium] gi|172051326|emb|CAP07668.1| ResD [Escherichia coli] gi|228480648|gb|ACQ41975.1| ResD [Escherichia coli] gi|290792325|gb|ADD63650.1| resolvase [Klebsiella pneumoniae] gi|302310130|gb|ADL14001.1| ResD [Escherichia coli] gi|302310258|gb|ADL14126.1| ResD [Escherichia coli] gi|308119051|gb|EFO56313.1| site-specific recombinase, phage integrase family [Escherichia coli MS 145-7] Length = 268 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 57/226 (25%), Positives = 96/226 (42%), Gaps = 52/226 (23%) Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL------------LYGCGL 168 + SLP A++ AL L ++H + SA+L+ L+ G Sbjct: 22 QPASLPVAIDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVPDLHRKMLLATLWNTGA 81 Query: 169 RISEALSLT-------PQNIMDDQSTL------------RIQGKGDKIRIVPLLPSVRKA 209 RI+EAL+LT P +TL R+ R+VPL S + Sbjct: 82 RINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAGRMPAGQQTHRLVPLSDSWYVS 141 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG------------ 255 L+ + +++P+ R R G+ +++ R +R ++G Sbjct: 142 QLQ-------TMVATLKIPMERRNRRTGRTEKARIWEVTDRTVRTWIGEAVAAAAADGVT 194 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 195 FSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240 >gi|303235615|ref|ZP_07322222.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302484062|gb|EFL47050.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 451 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 53/209 (25%), Positives = 95/209 (45%), Gaps = 35/209 (16%) Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMD 183 PR++ +++ ++D E +W + R L++ + C GL IS+ +L +NI+ Sbjct: 267 PRSITKEELEHIIDL-------EIEWENYRIVRDLFV-FSCFTGLAISDVRNLREENIVT 318 Query: 184 DQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-- 238 ++ L I+G+ K + V +LP + Y RGIR + Sbjct: 319 EEGKLCIKGRRMKTKTPYRVQVLPPALTIMNRY-----------------RGIRAGFVFD 361 Query: 239 --NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTT 295 + + ++R +G+ T H RH+FA+ + LS G + ++ +LGH L TT Sbjct: 362 VPTTDIVLNGMHYIQRNIGMETPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTT 421 Query: 296 QIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 Q+Y V+S+ M EI + + T K Sbjct: 422 QVYAAVSSERIHRDMQEIQQRIQDTFTLK 450 >gi|260174266|ref|ZP_05760678.1| tyrosine type site-specific recombinase [Bacteroides sp. D2] gi|315922537|ref|ZP_07918777.1| tyrosine type site-specific recombinase [Bacteroides sp. D2] gi|313696412|gb|EFS33247.1| tyrosine type site-specific recombinase [Bacteroides sp. D2] Length = 406 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 83/173 (47%), Gaps = 23/173 (13%) Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI 199 ++L K ++ ++ ++ GL S+ L+P++++ D++ L I+ K +I Sbjct: 232 IILAKEFTIKRVEQVRDVFVFCIFT-GLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKI 290 Query: 200 ---VPLLPSVRKAILEYYD---LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 +P+LP V +ILE Y C L LP+ R Y++++ Sbjct: 291 MCNIPVLP-VAASILEKYKNVAECTGKL-----LPVLSNQR--------MNSYLKEIADV 336 Query: 254 LGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 G+ + + HT RHS+AT + L+NG + ++ +LGH S T+ Y V +N Sbjct: 337 CGIHKNLSTHTARHSYATSICLANGVSMENVAKMLGHADTSITKHYARVLDQN 389 >gi|260855846|ref|YP_003229737.1| integrase [Escherichia coli O26:H11 str. 11368] gi|257754495|dbj|BAI25997.1| integrase [Escherichia coli O26:H11 str. 11368] gi|323152673|gb|EFZ38948.1| integrase [Escherichia coli EPECa14] Length = 333 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 21/134 (15%) Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226 G R SEA L ++ + T ++ KG K R VP+ P L Sbjct: 202 GARWSEAEGLKQSQVLPGRITF-VKTKGKKNRTVPISP-----------------QLQAM 243 Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286 LP RG P F I+ R + LP H LRH+FA+H + GG++ +Q I Sbjct: 244 LPQKRGALFSPCYE-AFDAAIK--RAKIELPDGQLTHVLRHTFASHFMMRGGNILVLQKI 300 Query: 287 LGHFRLSTTQIYTN 300 LGH + T Y + Sbjct: 301 LGHSDIKMTMRYAH 314 >gi|295087392|emb|CBK68915.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 382 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 13/165 (7%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKG-DKIRIVPLLP--SVRKAILEYYDL 216 ++ C GL S+ L ++I++D + +R KG K +I+ +P + ILE Y Sbjct: 226 FVFCCFTGLAFSDIHGLRKEHIVEDSNGVRWIRKGRQKTKIMCNIPLMEIPLKILEKYST 285 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 + + P+ + + +N Y+++L G+ + T H RH+FAT L+N Sbjct: 286 NEYCKKHGVLFPV---LCNQKMNA-----YLKELADICGIKKTLTTHVGRHTFATFALAN 337 Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321 G + S+ +LGH + T+ Y V + M +I H SI Sbjct: 338 GVSIESVAKMLGHTNVQMTRHYARVLDRTVIREMSQIKMDFHISI 382 >gi|227544527|ref|ZP_03974576.1| site-specific tyrosine recombinase XerS [Lactobacillus reuteri CF48-3A] gi|300908115|ref|ZP_07125584.1| site-specific tyrosine recombinase XerS [Lactobacillus reuteri SD2112] gi|227185505|gb|EEI65576.1| site-specific tyrosine recombinase XerS [Lactobacillus reuteri CF48-3A] gi|300894731|gb|EFK88084.1| site-specific tyrosine recombinase XerS [Lactobacillus reuteri SD2112] Length = 376 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 6/168 (3%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ AI+ L+ G G+R+SEA ++ ++ QS L + KG + VP+ P I Y Sbjct: 206 RDIAIIALILGTGVRVSEAANVNLGDLNLKQSLLDVTRKGGQRDSVPIAPWAITYIKAYQ 265 Query: 215 DLCPFDLN-LNIQLPLFRGIRGKP---LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 + + L F + K + ++ +++ G PL T H LRH+ A Sbjct: 266 AIRAQRYHALKKDTAFFLTVYHKQTRRMTANAIEKMVKKYSTAFGHPL--TPHKLRHTLA 323 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + + D + LG S T +YT+V+ K D + EI + ++ Sbjct: 324 SEMYEVTKDQVLVAQQLGQKGTSATDLYTHVDQKQQRDALKEISETSY 371 >gi|170761057|ref|YP_001787301.1| phage integrase family site specific recombinase [Clostridium botulinum A3 str. Loch Maree] gi|169408046|gb|ACA56457.1| site-specific recombinase, phage integrase family [Clostridium botulinum A3 str. Loch Maree] Length = 357 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 67/153 (43%), Gaps = 27/153 (17%) Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKI----------------RIVPLLPSVRKA 209 CGLRI E L LT +I + STL + + K+ R+VP+ P+ K Sbjct: 201 CGLRIGEVLGLTWADIDEINSTLTVNKQWKKLKSGNWGFGSVKSKNSNRVVPISPNTLK- 259 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 +L F N + + +N R +R + G +S H LRH++ Sbjct: 260 -----ELKNFKKNFVTDIHNRIIVCADSIN---LSRGLRDCYKRNGYNISI--HDLRHTY 309 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 AT L+ NG D ++ +LGH T + Y +VN Sbjct: 310 ATMLIGNGVDFKTAAKLLGHTIEMTMKTYAHVN 342 >gi|307129611|ref|YP_003881627.1| Phage integrase [Dickeya dadantii 3937] gi|306527140|gb|ADM97070.1| Phage integrase [Dickeya dadantii 3937] Length = 363 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 61/136 (44%), Gaps = 25/136 (18%) Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226 G R SEA L+ Q + + T + KG K R VP+ E YD P Sbjct: 207 GARWSEAEGLSGQQVTPYRITY-TRTKGKKNRTVPI-------SRELYDEIPRK------ 252 Query: 227 LPLFRGIRGKPLNPG--VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284 GK +P F+R I R + LP H LRH+FA+H + NGG++ ++ Sbjct: 253 -------SGKLFSPCRKAFERAIN--RTGIQLPDGQCTHVLRHTFASHFMMNGGNILVLR 303 Query: 285 SILGHFRLSTTQIYTN 300 ILGH + T IY + Sbjct: 304 DILGHADIKMTMIYAH 319 >gi|270294584|ref|ZP_06200786.1| tyrosine type site-specific recombinase [Bacteroides sp. D20] gi|270276051|gb|EFA21911.1| tyrosine type site-specific recombinase [Bacteroides sp. D20] Length = 406 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 82/173 (47%), Gaps = 23/173 (13%) Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI 199 ++L K ++ ++ ++ GL S+ L+P++++ D++ L I+ K +I Sbjct: 232 IILAKEFTIKRVEQVRDVFVFCIFT-GLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKI 290 Query: 200 ---VPLLPSVRKAILEYYD---LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 +P+LP V +ILE Y C L LP+ R Y++++ Sbjct: 291 MCNIPVLP-VAASILEKYKNVAECTGKL-----LPVLSNQR--------MNSYLKEIADV 336 Query: 254 LGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 GL + H+ RHS+AT + L+NG + ++ +LGH S T+ Y V +N Sbjct: 337 CGLQKNLCTHSARHSYATSICLANGVSMENVAKMLGHADTSVTKHYARVLDQN 389 >gi|196047914|ref|ZP_03115092.1| related, transposase A [Bacillus cereus 03BB108] gi|196021170|gb|EDX59899.1| related, transposase A [Bacillus cereus 03BB108] Length = 356 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 56/218 (25%), Positives = 103/218 (47%), Gaps = 31/218 (14%) Query: 93 SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152 S KSFL ++ K K +I N+ LK+ + L ++Q V VL T+ Sbjct: 143 SRYKSFLHHINKDK----PSIRNVLKLKEPRKKLKILTKEQ----VQQVLNATT------ 188 Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGKGD-----KIRIVPLLP 204 + R++ ++ LL+ GLRI E LSL ++ + D + +R+ +G+ K++ Sbjct: 189 NIRDTFLIQLLFETGLRIGEVLSLFIEDFIFDHAKGHRIRLVDRGELENGAKLKTGEREI 248 Query: 205 SVRKAILEYYD------LCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLP 257 V +++++ YD + D++ N RG GKP+ + ++L++ G+ Sbjct: 249 FVSQSLMDLYDDYLYEIMDELDVDTNFVFIKLRGENAGKPMTYSDVESLFKRLKKKTGIN 308 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 L H RH+ AT +++ +Q LGH ++ TT Sbjct: 309 LH--PHLFRHTHATIYYQKTKNIKQVQERLGHSQIQTT 344 >gi|218262944|ref|ZP_03477242.1| hypothetical protein PRABACTJOHN_02922 [Parabacteroides johnsonii DSM 18315] gi|218223043|gb|EEC95693.1| hypothetical protein PRABACTJOHN_02922 [Parabacteroides johnsonii DSM 18315] Length = 392 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 54/166 (32%) Query: 162 LLYGC--GLRISEALSLTPQN--IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 L+ C GLR S+ +++ P N ++DD+ L + SV+ Sbjct: 240 FLFSCYTGLRFSDIVNIRPDNFHLIDDKLWL-------------VYSSVKT--------- 277 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-GLPLSTTA-------------- 262 ++N++LPLF GK L V++RY ++ R L G+ +S + Sbjct: 278 ----DVNVRLPLFLLFDGKAL--AVYERYRKRYSRTLFGVSVSANSNVNKQLKRICRLAE 331 Query: 263 -------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 H RH+ AT LL NG ++ ++Q +LGH + TT+IY+++ Sbjct: 332 IDKRLSFHMARHTNATLLLYNGANITTVQKLLGHKSVRTTEIYSDI 377 >gi|327313820|ref|YP_004329257.1| site-specific recombinase, phage integrase family [Prevotella denticola F0289] gi|326944777|gb|AEA20662.1| site-specific recombinase, phage integrase family [Prevotella denticola F0289] Length = 428 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 77/157 (49%), Gaps = 17/157 (10%) Query: 162 LLYGC--GLRISEALSLTPQNI--MD-DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 L+ C GL + +LTP NI MD Q + + K D + + LL + K I++ Y+ Sbjct: 249 FLFSCFTGLAYVDVANLTPDNIITMDGKQWIVTARQKTDTLSHILLL-DIPKIIIKKYEG 307 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 + L +P+ R Y++++ G+ + T H RH+FAT +L+ Sbjct: 308 KAKNGRL---IPILSNQR--------MNSYLKEIADVCGINKNLTFHMARHTFATMMLTK 356 Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G + S+ +LGH ++TTQ+Y + +K + M+ + Sbjct: 357 GVPVESVSKMLGHTSITTTQLYARITNKKIENDMLAV 393 >gi|291528111|emb|CBK93697.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] gi|291540208|emb|CBL13319.1| Site-specific recombinase XerD [Roseburia intestinalis XB6B4] Length = 328 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 52/240 (21%), Positives = 105/240 (43%), Gaps = 23/240 (9%) Query: 69 TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA 128 T + + ++++ K+ +++R S SF +L+ +S + + +K ++++ Sbjct: 99 TYLAEYQKEKQSSKVTIDNIRRIFS---SFFSWLEDEDYIIKSPVRRIHRIKAASTIKET 155 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 ++Q ++ DN + R+ A++ +L G+R+ E + L +I D+ Sbjct: 156 YTDEQLESMRDNC----------DNPRDLALIDILASTGMRVGELVLLNRDDISFDEREC 205 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP---GVFQR 245 + GKGDK R+V + + Y D + LF ++ P N G + Sbjct: 206 IVFGKGDKERMVYFDARTKIHLQNY-----LDSRTDNNEALFVSLKA-PYNRMKIGGIEL 259 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 +R++ + L + H R + AT + G + +Q +LGH R+ TT Y V N Sbjct: 260 RLREMGKRLNIE-KVHPHKFRRTLATVAIDKGMPIEQLQKLLGHQRIDTTLQYAMVKQSN 318 >gi|281425478|ref|ZP_06256391.1| integrase [Prevotella oris F0302] gi|281400471|gb|EFB31302.1| integrase [Prevotella oris F0302] Length = 428 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 77/157 (49%), Gaps = 17/157 (10%) Query: 162 LLYGC--GLRISEALSLTPQNI--MD-DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 L+ C GL + +LTP NI MD Q + + K D + + LL + K I++ Y+ Sbjct: 249 FLFSCFTGLAYVDVANLTPDNIITMDGKQWIVTARQKTDTLSHILLL-DIPKIIIKKYEG 307 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 + L +P+ R Y++++ G+ + T H RH+FAT +L+ Sbjct: 308 KAKNGRL---IPILSNQR--------MNSYLKEIADVCGINKNLTFHMARHTFATMMLTK 356 Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G + S+ +LGH ++TTQ+Y + +K + M+ + Sbjct: 357 GVPVESVSKMLGHTSITTTQLYARITNKKIENDMLAV 393 >gi|325853917|ref|ZP_08171433.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325484254|gb|EGC87184.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 427 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 65/210 (30%), Positives = 85/210 (40%), Gaps = 36/210 (17%) Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTL 188 E+ ALT D L + +D N L L GC GL S+ L MDD T Sbjct: 219 ERNALTADDLQKLLAYRPHRSVD--NHCRLIFLLGCFTGLAFSDLKKLR----MDDVYTF 272 Query: 189 R--------IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG---IRGKP 237 + K IVPLLP K L I P R R P Sbjct: 273 GDGRRYISLCRTKTQNRSIVPLLPIAEKI-------------LAIVSPGRREGLFFREFP 319 Query: 238 LNPGVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLST 294 N F R I+++ GLP T T+HT RH+FAT + L NG + ++ +LGH +ST Sbjct: 320 SNSN-FNRTIQEICIKAGLPPHTQATSHTARHTFATTICLENGLPIETVSKMLGHRFIST 378 Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 T+IY V M + H + +K Sbjct: 379 TEIYARVTKSKIAKEMQPLMGSEHTRVLRK 408 >gi|222528753|ref|YP_002572635.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725] gi|222455600|gb|ACM59862.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725] Length = 325 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 61/229 (26%), Positives = 103/229 (44%), Gaps = 39/229 (17%) Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 +N+ ++ +LP+ E+ + + + + T + D+ A L LY GLR E L L Sbjct: 101 QNVSEAVALPKV--ERPEIKTLSSEQVTTFLQAAQTDSLYPAFLLELY-TGLRRGELLGL 157 Query: 177 TPQNIMDDQSTLRIQGKGDKI---------------------RIVPLLPSVRKAILEYYD 215 +I D T+ ++ ++ R++P+ V + E Y+ Sbjct: 158 KWDDIDFDNCTIHVKRSLVRVYDHNLKKTTLLLQPPKTKAGYRVIPIPDFVVAELKELYE 217 Query: 216 ------LCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 L + N LN+ +F +G P++P F+R +QL + LP + H LRH+ Sbjct: 218 EHQRIKLSQPNFNSLNL---MFVTTQGTPIDPRNFERKFKQLLKKANLP-NIRLHDLRHT 273 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVN---SKNGGDWMMEI 313 AT LL + +Q ILGH +STT IY++VN K ++EI Sbjct: 274 VATLLLQQNVHPKIVQEILGHRDISTTLDIYSHVNIELKKKATSCLVEI 322 >gi|172065724|ref|YP_001816436.1| integrase family protein [Burkholderia ambifaria MC40-6] gi|171997966|gb|ACB68883.1| integrase family protein [Burkholderia ambifaria MC40-6] Length = 580 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 75/319 (23%), Positives = 130/319 (40%), Gaps = 65/319 (20%) Query: 27 IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 +ERG LS LT + D + F+ T + + +R + R F + + Sbjct: 260 VERGRALSSLTTE----DAVAYRAFIRRPTPHERWVGPVRPRGAPDWRPF-----SGGLS 310 Query: 85 DRSLKRSLSGIKSFLKYLKKRK--ITTESNILNMRNLKKSNSL--PRALNEKQAL---TL 137 RS +LS + + ++L +++ + + +R+ + +N+L A E + L T+ Sbjct: 311 ARSAAYTLSVLGALFRWLIEQRYLLANPFAGVKVRDTRGANALDTSHAFTEGEWLLVRTI 370 Query: 138 VDNVLLHT-----SHETKWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDD---QS 186 D + + + W A + ++L Y GLR SE + T +I D + Sbjct: 371 ADGLEFRKDKPSGAPGSGWTPAAAQRLRFILDFGYATGLRASELVGATLGDIDTDAHGDA 430 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP------ 240 L++ GKG K V L P R A+ Y + +LP+ +R +P P Sbjct: 431 WLKVIGKGSKAARVALPPLARTALDRYL--------VARRLPVT-PVRWRPDTPLIPSLA 481 Query: 241 -------------GVFQRYIRQLRRYLGL--PL------STTAHTLRHSFATHLLSNGGD 279 V QR+ Q + P + H +RH+ ATH L+ G + Sbjct: 482 EDGAAAITSVRLWKVMQRFFAQTAALVDADNPALAQKLRQASPHWMRHTHATHALARGAE 541 Query: 280 LRSIQSILGHFRLSTTQIY 298 L +++ L H +STT IY Sbjct: 542 LTTVRDNLRHASISTTSIY 560 >gi|150007390|ref|YP_001302133.1| integrase [Parabacteroides distasonis ATCC 8503] gi|149935814|gb|ABR42511.1| integrase [Parabacteroides distasonis ATCC 8503] Length = 248 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 96/193 (49%), Gaps = 26/193 (13%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLT 177 KK+ + PRAL+ +++ + +V + ++ I AR+ L+GC G+ ++ +S+T Sbjct: 56 KKTETTPRALS-RESFERIRDVEI-PAYRKSHILARDM----FLFGCYTGVCYADVVSIT 109 Query: 178 PQNIMDDQST---LRIQGKGDKIRI-VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233 +N+ D+ L+ + K +++R V LLP I +Y+ + + PL Sbjct: 110 HENLYTDEDGALWLKYRRKKNELRASVKLLPEAIALIEKYHSG-----DRDTLFPL---- 160 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRL 292 L+ +R+++ L G+ H RHSFA+ + L G + +I +LGH + Sbjct: 161 ----LHWSNLRRHMKALAALAGIKDDLCYHQARHSFASLITLEAGVPIETISRMLGHSDI 216 Query: 293 STTQIYTNVNSKN 305 STTQ+Y V+ K Sbjct: 217 STTQVYARVSPKK 229 >gi|323978150|gb|EGB73236.1| phage integrase [Escherichia coli TW10509] Length = 317 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 5/78 (6%) Query: 229 LFRGIR---GKPLNPGVFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSI 283 LF I+ GK + P + +R + + + +P H LRH+FA+H + NGG++ ++ Sbjct: 218 LFEKIKKRGGKLVFPTLDYSLVRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTL 277 Query: 284 QSILGHFRLSTTQIYTNV 301 Q ILGH ++ TT IY ++ Sbjct: 278 QKILGHAKIQTTMIYAHL 295 >gi|296840910|ref|ZP_06899429.1| tyrosine recombinase XerD [Neisseria polysaccharea ATCC 43768] gi|296839547|gb|EFH23485.1| tyrosine recombinase XerD [Neisseria polysaccharea ATCC 43768] Length = 219 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 5/116 (4%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S R+LS K ++++ + T++ ++ K ++P + E+Q L+ T Sbjct: 66 SQARALSACKRLYIWMEREGMRTDNPTRLLKPPKIDKNIPTLITEQQISRLLSAPDTDTP 125 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202 H R+ A+L L+Y GLR+SEA+ L+ N+ D+ + GKG+K RIVP+ Sbjct: 126 H-----GLRDKALLELMYATGLRVSEAVRLSFGNLDLDRGCITTLGKGNKQRIVPM 176 >gi|258649152|ref|ZP_05736621.1| integrase [Prevotella tannerae ATCC 51259] gi|260850814|gb|EEX70683.1| integrase [Prevotella tannerae ATCC 51259] Length = 407 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 16/148 (10%) Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 ++ C GL + +LTP NI +DD+ + + + + LL + K I+ Y Sbjct: 249 FIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTNVETNVLLLDIPKRIIAKYGHK 308 Query: 218 PF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 + D L LP+ + + +N Y++++ G+ + T H RH+FAT LS Sbjct: 309 TYRDGKL---LPV---LTNQKINA-----YLKEIGDLCGIKKNLTFHLARHTFATMSLSK 357 Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSK 304 G + S+ +LGH L TTQIY + +K Sbjct: 358 GVPMESVSKMLGHTNLKTTQIYARITNK 385 >gi|149200657|ref|ZP_01877656.1| phage integrase [Lentisphaera araneosa HTCC2155] gi|149136258|gb|EDM24712.1| phage integrase [Lentisphaera araneosa HTCC2155] Length = 242 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 59/196 (30%), Positives = 87/196 (44%), Gaps = 30/196 (15%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 ++K + F +Y+ KR E L + + + SLP L++ D LL S Sbjct: 67 TVKMDRCALSFFYQYVLKR----EWKWLEIVRIPRVKSLPDILSQ-------DETLLILS 115 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPS 205 H K AR L +Y GLRISE + + +I D+ L ++ KG K R+VPL P Sbjct: 116 HLEK---ARYRTCLTAIYSMGLRISEGVRIQTGDICKDRMRLHVRNSKGYKDRLVPL-PQ 171 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP---------LNPGVFQRYIRQLRRYLGL 256 V +L Y + ++ N L LF GK ++ G Q + GL Sbjct: 172 VTYQMLRDY----WVMHRN-PLLLFPRYAGKSRSNSKTTLHMDKGGVQSAFKAALADSGL 226 Query: 257 PLSTTAHTLRHSFATH 272 + H+LRHS+ATH Sbjct: 227 AKQVSVHSLRHSYATH 242 >gi|29350147|ref|NP_813650.1| transposase [Bacteroides thetaiotaomicron VPI-5482] gi|29342059|gb|AAO79844.1| transposase [Bacteroides thetaiotaomicron VPI-5482] Length = 407 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 13/165 (7%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKG-DKIRIVPLLP--SVRKAILEYYDL 216 ++ C GL S+ L ++I++D + +R KG K +I+ +P + ILE Y Sbjct: 251 FVFCCFTGLAFSDIHGLRKEHIVEDSNGVRWIRKGRQKTKIMCNIPLMEIPLKILEKYST 310 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 + + P+ + + +N Y+++L G+ + T H RH+FAT L+N Sbjct: 311 NEYCKKHGVLFPV---LCNQKMNA-----YLKELADICGIKKTLTTHVGRHTFATFALAN 362 Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321 G + S+ +LGH + T+ Y V + M +I H SI Sbjct: 363 GVSIESVAKMLGHTNVQMTRHYARVLDRTVIREMSQIKMDFHISI 407 >gi|296169384|ref|ZP_06851007.1| XerC/XerD family integrase/recombinase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895934|gb|EFG75626.1| XerC/XerD family integrase/recombinase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 388 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 22/75 (29%), Positives = 41/75 (54%) Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288 LFRG G P+ P + R GL ++ H LRH+F ++++ G + + ++G Sbjct: 293 LFRGRIGAPMRPDAIGELMAAASRRAGLDVAVRPHQLRHAFGSNVVDAGAGIDVVADLMG 352 Query: 289 HFRLSTTQIYTNVNS 303 H +S++Q+Y + +S Sbjct: 353 HAAVSSSQVYLHPDS 367 >gi|262067553|ref|ZP_06027165.1| integrase/recombinase [Fusobacterium periodonticum ATCC 33693] gi|291378728|gb|EFE86246.1| integrase/recombinase [Fusobacterium periodonticum ATCC 33693] Length = 328 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 72/295 (24%), Positives = 128/295 (43%), Gaps = 40/295 (13%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTI----RQLSYTEIRAFISKRRTQKIGDRS 87 S+ T++ Y + FL F+ + E +I + + + ++ A+I DR Sbjct: 33 SEKTVKDYMFHLKDFLHFV-YEGENDFSISEVIPLMQDIEKEDVEAYI----VHLFEDRK 87 Query: 88 LKRS-----LSGIKSFLKYLKKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLV 138 LK++ LS +KS K L+ + + + RN++ N L ++++ + + Sbjct: 88 LKKTSVNTILSALKSLYKELESNGLKNPVKYIKLFKVNRNIE--NVLKVSIDDIRKII-- 143 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLR-IQGKGD 195 L E K+ RN ILY L+ G+R E L+L ++ + +D+ + +Q K Sbjct: 144 --ELYKIDSEKKY---RNITILYTLFYTGMRSKELLTLQFKHFLRREDEYFFKLVQTKSG 198 Query: 196 KIRIVPLLPSVRKAILEY-------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 K P+ S+ K + EY Y L DL+ + PL+ I+ Sbjct: 199 KDVYKPVHKSLVKKLEEYRSYLMNMYSLDSKDLDEHYIFATSVS-NNSPLSYRSLNVIIQ 257 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + + + +S H +RH+ AT L NG D+ I+ LGH T++Y N S Sbjct: 258 DMGKLIEKDIS--PHNIRHAIATELSLNGADILEIRDFLGHSDTKVTEVYINARS 310 >gi|9632962|ref|NP_049990.1| integrase [Streptococcus phage Sfi21] gi|5524043|gb|AAD44095.1|AF115103_25 orf359 gp [Streptococcus phage Sfi21] gi|2292758|emb|CAA64931.1| integrase [Streptococcus phage Sfi21] gi|2897103|gb|AAC03454.1| integrase homolog [Streptococcus phage TP-J34] Length = 359 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 72/145 (49%), Gaps = 7/145 (4%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 A LY++ G+R +E L LT +I D L + D +P+ K+ + L Sbjct: 191 AALYIIAKTGIRFAECLGLTVDDIKRDTGMLSVNKTWDYKNNTGFMPTKTKSSIREIPLD 250 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 +N QLP R + P + + + LR+ +G + H+LRH++A++L+++ Sbjct: 251 DEFINFIDQLPPTDDGR---ILPSLSNNAVNKTLRKIVGREVR--VHSLRHTYASYLIAH 305 Query: 277 GGDLRSIQSILGHFRLSTT-QIYTN 300 DL S+ +LGH L+ T ++Y + Sbjct: 306 DIDLISVSQVLGHENLNITLEVYAH 330 >gi|262381576|ref|ZP_06074714.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B] gi|262296753|gb|EEY84683.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B] Length = 406 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 82/173 (47%), Gaps = 23/173 (13%) Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI 199 ++L K ++ ++ ++ GL S+ L+P++++ D++ L I+ K +I Sbjct: 232 IILAKEFTIKRVEQVRDVFIFCVFT-GLAFSDVKDLSPEHLVRDNKGELWIRKNRQKTKI 290 Query: 200 ---VPLLPSVRKAILEYYD---LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 +P+LP V +ILE Y C L LP+ R Y++++ Sbjct: 291 MCNIPVLP-VAASILEKYKNVAECTGKL-----LPVLSNQR--------MNSYLKEIADV 336 Query: 254 LGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 GL + H+ RHS+AT + L+NG + ++ +LGH S T+ Y V +N Sbjct: 337 CGLQKNLCTHSARHSYATSICLANGVSMENVAKMLGHADTSVTKHYARVLDQN 389 >gi|170735536|ref|YP_001774650.1| integrase family protein [Burkholderia cenocepacia MC0-3] gi|169821574|gb|ACA96155.1| integrase family protein [Burkholderia cenocepacia MC0-3] Length = 578 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 75/319 (23%), Positives = 129/319 (40%), Gaps = 65/319 (20%) Query: 27 IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 +ERG LS LT + D + F+ T + + +R + R F + + Sbjct: 258 VERGRALSSLTTE----DALAYRAFIRRPTPHERWVGPVRPRGAPDWRPF-----SGALS 308 Query: 85 DRSLKRSLSGIKSFLKYLKKRK--ITTESNILNMRNLKKSNSL--PRALNEKQAL---TL 137 RS +LS + + ++L +++ + + +R+ + + +L A E + L T+ Sbjct: 309 ARSAAYTLSVLGALFRWLIEQRYLLANPFAGVKVRDTRGATALDTSHAFTEGEWLLVRTI 368 Query: 138 VDNV-----LLHTSHETKWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDD---QS 186 D + + ++ W A + ++L Y GLR SE + T +I D + Sbjct: 369 ADGLEFGKRTADGAPQSGWTPAAAQRLRFILDFGYATGLRASELVGATLGDIETDAHGDA 428 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP------ 240 L++ GKG K V L P R A+ Y + +LP+ +R +P P Sbjct: 429 WLKVIGKGSKAARVALPPLARTALDRYL--------VARRLPVT-PVRWRPDTPLIPRLA 479 Query: 241 -------------GVFQRYIRQLRRYLGLPLSTTAHTLR--------HSFATHLLSNGGD 279 V QR+ Q + AH LR H+ ATH L+ G + Sbjct: 480 EDDAAAITSVRLWKVMQRFFAQTADAVEADHPALAHKLRQASPHWMRHTHATHALARGAE 539 Query: 280 LRSIQSILGHFRLSTTQIY 298 L +++ L H +STT IY Sbjct: 540 LTTVRDNLRHASISTTSIY 558 >gi|329955504|ref|ZP_08296412.1| site-specific recombinase, phage integrase family [Bacteroides clarus YIT 12056] gi|328525907|gb|EGF52931.1| site-specific recombinase, phage integrase family [Bacteroides clarus YIT 12056] Length = 333 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 70/148 (47%), Gaps = 21/148 (14%) Query: 163 LYGC--GLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 L+ C GLRIS+ L LT NI D+ +RI +K LP +A+ +LC Sbjct: 190 LFSCMTGLRISDILQLTWDNIEVGPDNGYYIRICT--EKTETEATLPISNEAL----ELC 243 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 + + L R + +PL +Q G+ T H RHS+A +S G Sbjct: 244 GIPGSGRVFKGLTRAMTNQPL---------KQWISEAGIKKHITFHCFRHSYAVIQISLG 294 Query: 278 GDLRSIQSILGHFRLSTTQIYTN-VNSK 304 D+ ++ +L H +STTQIY + VNSK Sbjct: 295 TDIYTVSKMLTHKNVSTTQIYADLVNSK 322 >gi|229000404|ref|ZP_04159960.1| Site-specific recombinase, phage integrase [Bacillus mycoides Rock3-17] gi|228759361|gb|EEM08351.1| Site-specific recombinase, phage integrase [Bacillus mycoides Rock3-17] Length = 360 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 57/217 (26%), Positives = 92/217 (42%), Gaps = 22/217 (10%) Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 LK +L + F+K+ RK + E + L L + + ++ + K D VLLH Sbjct: 133 LKEALIKLDPFIKFEGFRKDSKEIDFLTKDELNRLLKVAKSYSNKSYKHFRDYVLLH--- 189 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLP 204 LL RI+EAL L+P +I T I+ K K R+VPL Sbjct: 190 --------------LLIDGMFRITEALLLSPLDIDHTNKTTIIRSNNAKSRKARVVPLSN 235 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 + +++ + + +F + G+ L+ R +R+ + H Sbjct: 236 KTYRLLMQLLEENE-AFEGEVDDLIFLSLSGRMLSKNNVLRDMRKYAVEANITKRFYLHL 294 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +RHS ATH LS GD+ S++ ILGH L Y ++ Sbjct: 295 IRHSAATHHLST-GDIESLRKILGHIDLRMVLHYAHM 330 >gi|188532702|ref|YP_001906499.1| Bacteriophage 186 integrase [Erwinia tasmaniensis Et1/99] gi|188027744|emb|CAO95599.1| Bacteriophage 186 integrase [Erwinia tasmaniensis Et1/99] Length = 342 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 67/308 (21%), Positives = 116/308 (37%), Gaps = 42/308 (13%) Query: 8 EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDT--------RQFLIFLAFYTEEKIT 59 E ++FE + W + E R L +L Y RQ + AF + Sbjct: 35 EALAFEQFTVQNPWQEEREDRRTLKELVDAWYSAHGITLKDGIRRQQAMHHAFGCMGEPL 94 Query: 60 IQTIRQLSYTEIRA------FISKRRTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESN 112 + ++ R + R +++ R+L L+ ++ L + + E+ Sbjct: 95 ARDFDAQMFSRYRERRLKGEYARSNRVKEVSPRTLNLELAYFRAVFNELNRLGEWKGENP 154 Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172 + NMR + + L Q L+D H + + ++ + G R SE Sbjct: 155 LKNMRPFRTAEMEMAWLTHDQIALLLDECKRHDHPDLE-------TVVRICLATGARWSE 207 Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232 A SL ++ + T KG K R VP+ E Y+ P D + + Sbjct: 208 AESLKKSHLAKYKITY-TNTKGRKNRTVPISK-------ELYESLPDDKKGRLFSDCY-- 257 Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 G F+ + R + LP H LRH+FA+H + NGG++ +Q +LGH + Sbjct: 258 --------GAFRSALE--RTGIELPAGQLTHVLRHTFASHFMMNGGNILVLQRVLGHTDI 307 Query: 293 STTQIYTN 300 T Y + Sbjct: 308 KMTMRYAH 315 >gi|148544222|ref|YP_001271592.1| site-specific tyrosine recombinase XerS [Lactobacillus reuteri DSM 20016] gi|184153585|ref|YP_001841926.1| site-specific tyrosine recombinase XerS [Lactobacillus reuteri JCM 1112] gi|227364653|ref|ZP_03848711.1| site-specific tyrosine recombinase XerS [Lactobacillus reuteri MM2-3] gi|325682232|ref|ZP_08161749.1| phage integrase family integrase/recombinase [Lactobacillus reuteri MM4-1A] gi|148531256|gb|ABQ83255.1| phage integrase family protein [Lactobacillus reuteri DSM 20016] gi|183224929|dbj|BAG25446.1| integrase [Lactobacillus reuteri JCM 1112] gi|227070324|gb|EEI08689.1| site-specific tyrosine recombinase XerS [Lactobacillus reuteri MM2-3] gi|324978071|gb|EGC15021.1| phage integrase family integrase/recombinase [Lactobacillus reuteri MM4-1A] Length = 359 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 6/168 (3%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ AI+ L+ G G+R+SEA ++ ++ QS L + KG + VP+ P I Y Sbjct: 189 RDIAIIALILGTGVRVSEAANVNLGDLNLKQSLLDVTRKGGQRDSVPIAPWAITYIKAYQ 248 Query: 215 DLCPFDLN-LNIQLPLFRGIRGKP---LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 + + L F + K + ++ +++ G PL T H LRH+ A Sbjct: 249 AIRAQRYHALKKDTAFFLTVYHKQTRRMTANAIEKMVKKYSTAFGHPL--TPHKLRHTLA 306 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 + + D + LG S T +YT+V+ K D + EI + ++ Sbjct: 307 SEMYEVTKDQVLVAQQLGQKGTSATDLYTHVDQKQQRDALKEISETSY 354 >gi|260844019|ref|YP_003221797.1| putative integrase [Escherichia coli O103:H2 str. 12009] gi|257759166|dbj|BAI30663.1| putative integrase [Escherichia coli O103:H2 str. 12009] Length = 312 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 23/142 (16%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221 +L G R E +L + ++ + T + K K R VP+ S+ + I + Sbjct: 175 ILLSTGARWGEVAALEQRRVLHCRITFS-KTKNSKNRTVPITESLFEKIKK--------- 224 Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGD 279 RG GK + P + +R + + + +P H LRH+FA+H + NGG+ Sbjct: 225 ---------RG--GKLVFPTLDYSLVRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGN 273 Query: 280 LRSIQSILGHFRLSTTQIYTNV 301 + ++Q ILGH ++ TT IY ++ Sbjct: 274 ILTLQKILGHAKIQTTMIYAHL 295 >gi|298482012|ref|ZP_07000201.1| transposase [Bacteroides sp. D22] gi|298271876|gb|EFI13448.1| transposase [Bacteroides sp. D22] Length = 407 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 13/165 (7%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKG-DKIRIVPLLP--SVRKAILEYYDL 216 ++ C GL S+ L ++I++D + +R KG K +I+ +P + ILE Y Sbjct: 251 FVFCCFTGLAFSDIHGLRKEHIVEDSNGVRWIRKGRQKTKIMCNIPLMEIPLKILEKYST 310 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 + + P+ + + +N Y+++L G+ + T H RH+FAT L+N Sbjct: 311 NEYCKKHGVLFPV---LCNQKMNA-----YLKELADICGIKKTLTTHVGRHTFATFALAN 362 Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321 G + S+ +LGH + T+ Y V + M +I H SI Sbjct: 363 GVSIESVAKMLGHTNVQMTRHYARVLDRTVIREMSQIKMDFHISI 407 >gi|215486887|ref|YP_002329318.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69] gi|291282843|ref|YP_003499661.1| integrase [Escherichia coli O55:H7 str. CB9615] gi|215264959|emb|CAS09345.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69] gi|290762716|gb|ADD56677.1| integrase [Escherichia coli O55:H7 str. CB9615] Length = 324 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 19/140 (13%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221 +L G R E +L + ++ + T + K K R VP+ S+ + I + F Sbjct: 188 ILLSTGARWGEVAALEQRRVLHCRITFS-KTKNSKNRTVPISESLFEKIKKRGGKLVFP- 245 Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281 + PL R + K + P V P H LRH+FA+H + NGG++ Sbjct: 246 --TLDYPLVRDVI-KTVAPDV--------------PDGQAVHALRHTFASHFMMNGGNIL 288 Query: 282 SIQSILGHFRLSTTQIYTNV 301 ++Q ILGH ++ TT IY ++ Sbjct: 289 TLQKILGHAKIQTTMIYAHL 308 >gi|304320725|ref|YP_003854368.1| Phage integrase [Parvularcula bermudensis HTCC2503] gi|303299627|gb|ADM09226.1| Phage integrase [Parvularcula bermudensis HTCC2503] Length = 421 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 65/230 (28%), Positives = 94/230 (40%), Gaps = 28/230 (12%) Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 G + KR++ KS L Y+K ++ N+R L R L+ +A L + Sbjct: 194 GTGTAKRTMVSFKSVLAYMKDIGFVDQNVAANLR-LAPDGKKERYLSVAEAHRLGKCL-- 250 Query: 144 HTSHETKWIDARNSAI--LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 E + +D R + I + LL G R E L I D+S R + I P Sbjct: 251 ---DEWEQMDRRMTGITIIRLLLMTGARTKEIEELKWSEIDFDRSFFRFEETKSGRSIRP 307 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV-----FQRYIRQLRRYLGL 256 + P V + L P + LN N G Q R +R GL Sbjct: 308 ISPQVLDILKGLPRLHPTWVFLN--------------NAGTGPYCGTQAVWRLVREEAGL 353 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 P H LRHSFA+ L+NG L I ++LGH R TTQ Y +++ ++ Sbjct: 354 P-DVRKHDLRHSFASFALANGLSLPVIGTLLGHSRPETTQRYAHLSDRHA 402 >gi|288802660|ref|ZP_06408098.1| integrase [Prevotella melaninogenica D18] gi|299141691|ref|ZP_07034827.1| integrase [Prevotella oris C735] gi|288334810|gb|EFC73247.1| integrase [Prevotella melaninogenica D18] gi|298577027|gb|EFI48897.1| integrase [Prevotella oris C735] Length = 403 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 77/157 (49%), Gaps = 17/157 (10%) Query: 162 LLYGC--GLRISEALSLTPQNI--MD-DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 L+ C GL + +LTP NI MD Q + + K D + + LL + K I++ Y+ Sbjct: 224 FLFSCFTGLAYVDVANLTPDNIITMDGKQWIVTARQKTDTLSHILLL-DIPKIIIKKYEG 282 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 + L +P+ R Y++++ G+ + T H RH+FAT +L+ Sbjct: 283 KAKNGRL---IPILSNQR--------MNSYLKEIADVCGINKNLTFHMARHTFATMMLTK 331 Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 G + S+ +LGH ++TTQ+Y + +K + M+ + Sbjct: 332 GVPVESVSKMLGHTSITTTQLYARITNKKIENDMLAV 368 >gi|228470660|ref|ZP_04055516.1| putative tyrosine type site-specific recombinase [Porphyromonas uenonis 60-3] gi|299143043|ref|ZP_07036164.1| integrase [Prevotella oris C735] gi|228307668|gb|EEK16647.1| putative tyrosine type site-specific recombinase [Porphyromonas uenonis 60-3] gi|298575494|gb|EFI47379.1| integrase [Prevotella oris C735] Length = 427 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 89/211 (42%), Gaps = 38/211 (18%) Query: 131 EKQALTLVD--NVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQS 186 E+ ALT D +L + H + N L L GC GL S+ L MDD Sbjct: 219 ERNALTADDLQKLLAYRPHRS----TDNHCRLIFLLGCFTGLAFSDLKKLR----MDDVY 270 Query: 187 TLR--------IQGKGDKIRIVPLLPSVRK--AILEYYDLCPFDLNLNIQLPLFRGIRGK 236 T + K IVPLLP K AI+ + + LF R Sbjct: 271 TFGDGRRYISLCRTKTQNRSIVPLLPVAEKILAIVSH----------GRREGLF--FREF 318 Query: 237 PLNPGVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLS 293 P N F R I+++ GLP T T+HT RH+FAT + L NG + ++ +LGH +S Sbjct: 319 PSNSN-FNRTIQEICIKAGLPPHTQATSHTARHTFATTICLENGLPIETVSKMLGHRFIS 377 Query: 294 TTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 TT+IY V M + H + +K Sbjct: 378 TTEIYARVTKSKIAKEMQPLMGSEHTRVLRK 408 >gi|304384214|ref|ZP_07366629.1| possible tyrosine type site-specific recombinase [Prevotella marshii DSM 16973] gi|325270616|ref|ZP_08137214.1| tyrosine type site-specific recombinase [Prevotella multiformis DSM 16608] gi|304334715|gb|EFM00993.1| possible tyrosine type site-specific recombinase [Prevotella marshii DSM 16973] gi|324987011|gb|EGC18996.1| tyrosine type site-specific recombinase [Prevotella multiformis DSM 16608] Length = 387 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 65/210 (30%), Positives = 85/210 (40%), Gaps = 36/210 (17%) Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTL 188 E+ ALT D L + +D N L L GC GL S+ L MDD T Sbjct: 179 ERNALTADDLQKLLAYRPHRSVD--NHCRLIFLLGCFTGLAFSDLKKLR----MDDVYTF 232 Query: 189 R--------IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG---IRGKP 237 + K IVPLLP K L I P R R P Sbjct: 233 GDGRRYISLCRTKTQNRSIVPLLPIAEKI-------------LAIVSPGRREGLFFREFP 279 Query: 238 LNPGVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLST 294 N F R I+++ GLP T T+HT RH+FAT + L NG + ++ +LGH +ST Sbjct: 280 SNSN-FNRTIQEICIKAGLPPHTQATSHTARHTFATTICLENGLPIETVSKMLGHRFIST 338 Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 T+IY V M + H + +K Sbjct: 339 TEIYARVTKSKIAKEMQPLMGSEHTRVLRK 368 >gi|132267|sp|P18021|REDM_ECOLX RecName: Full=Resolvase; AltName: Full=Protein D gi|144169|gb|AAA23010.1| ORF [Plasmid pColBM-C1139] gi|147038|gb|AAA24255.1| D protein [Plasmid ColBM-Cl139] Length = 260 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 40/182 (21%) Query: 153 DARNSAILYLLYGCGLRISEAL-------SLTPQNIMDDQSTL------------RIQGK 193 D R +L L+ G RI+EAL SLTP +TL R+ Sbjct: 57 DLRRKMLLATLWNTGARINEALALTRGDFSLTPPYPFVQLATLKQRTEKAARTAGRMPAG 116 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLR 251 R+VPL S + L+ + +++P+ R + G+ +++ R +R Sbjct: 117 QQTHRLVPLSDSWYVSQLQ-------TMVATLKIPMERRNKRTGRTEKARIWEVTDRTVR 169 Query: 252 RYLG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 ++G + T HT RHS+A H+L G L+ +QS++GH +S+T++YT Sbjct: 170 TWIGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYT 229 Query: 300 NV 301 V Sbjct: 230 KV 231 >gi|323181030|gb|EFZ66568.1| integrase domain protein [Escherichia coli 1180] Length = 233 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 5/78 (6%) Query: 229 LFRGIR---GKPLNPGVFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSI 283 LF I+ GK + P + +R + + + +P H LRH+FA+H + NGG++ ++ Sbjct: 140 LFEKIKKRGGKLVFPTLDYSLVRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTL 199 Query: 284 QSILGHFRLSTTQIYTNV 301 Q ILGH ++ TT IY ++ Sbjct: 200 QKILGHAKIQTTMIYAHL 217 >gi|167762114|ref|ZP_02434241.1| hypothetical protein BACSTE_00465 [Bacteroides stercoris ATCC 43183] gi|167765046|ref|ZP_02437167.1| hypothetical protein BACSTE_03440 [Bacteroides stercoris ATCC 43183] gi|167697715|gb|EDS14294.1| hypothetical protein BACSTE_03440 [Bacteroides stercoris ATCC 43183] gi|167700073|gb|EDS16652.1| hypothetical protein BACSTE_00465 [Bacteroides stercoris ATCC 43183] Length = 401 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 96/204 (47%), Gaps = 31/204 (15%) Query: 102 LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161 +K KI T N K ++ +P L + + L+L D H + K +DA L+ Sbjct: 196 FRKYKIKTVEN-------KHTHLVPEELEQLERLSLTDK---HMKLQ-KSLDA----FLF 240 Query: 162 LLYGCGLRISEALSLTPQNIMD-DQSTLRIQGK---GDKIRIVPLLPSVRKAILEYYDLC 217 Y G+R S+ +L+ +NI+D +Q T I G ++R+ L K I+ L Sbjct: 241 CCYA-GMRYSDFTNLSKKNIVDINQETWLIYKSVKTGTEVRLPLYLLFAGKGIV---ILN 296 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 + NL FR +N + + + GL + HT RH+ AT L+ NG Sbjct: 297 KYRNNLE---DFFRLRDNSNINKDLII-----IAKLAGLSKKISFHTARHTNATLLIYNG 348 Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301 ++ ++Q +LGH + TTQ+YTN+ Sbjct: 349 VNITTVQKLLGHKSVKTTQVYTNI 372 >gi|284112236|ref|ZP_06386560.1| Tyrosine recombinase [Candidatus Poribacteria sp. WGA-A3] gi|283829717|gb|EFC34040.1| Tyrosine recombinase [Candidatus Poribacteria sp. WGA-A3] Length = 259 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 70/166 (42%), Gaps = 25/166 (15%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-------RIQGKGDKIRIVPLLPSVR 207 RN + L G RISE LSLT ++ + + +I G+ R VP+ R Sbjct: 27 RNRGLFMLGVSTGGRISELLSLTIGDVYQNGKPVTDLLFDKKIVKGGEVSRAVPVNTDGR 86 Query: 208 KAIL--------EYYDLCPFDLNLNIQLPLF--RGIRGK-PLNPGVFQRYIRQLRRYLGL 256 AI +Y + P PLF R G +N +++ + GL Sbjct: 87 TAIENLIDWHREKYKTIAP-------SRPLFPSRNKNGSVAMNRQTAHEMLKKAFQAAGL 139 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 H+LR SFA + GD+ +Q +LGH +STTQ Y VN Sbjct: 140 NGKLATHSLRKSFAQRVYEESGDIYLVQELLGHRNVSTTQKYIGVN 185 >gi|281491512|ref|YP_003353492.1| phage integrase [Lactococcus lactis subsp. lactis KF147] gi|281375230|gb|ADA64743.1| Phage protein, integrase [Lactococcus lactis subsp. lactis KF147] Length = 273 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 22/152 (14%) Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225 G+RISE S +++ ++ + I+ KG K RI+ + ++K + Y + Sbjct: 137 TGMRISEVCSFKVEDL--NKKIIVIENKG-KQRIITIPQFLKKQLKSYVKKAGIE----- 188 Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL----STTAHTLRHSFATHLLSNGGDLR 281 + ++ R +N L++ G+ H++RH FA L NGGD Sbjct: 189 ETIFYKNQRTYRVN----------LKKIAGIAKVNKEKVYPHSIRHYFAKSFLMNGGDAT 238 Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 +Q +LGH +++TT IYT ++S D +I Sbjct: 239 VLQQLLGHEQIATTTIYTKLSSNELSDQFSKI 270 >gi|217967670|ref|YP_002353176.1| integrase domain protein SAM domain protein [Dictyoglomus turgidum DSM 6724] gi|217336769|gb|ACK42562.1| integrase domain protein SAM domain protein [Dictyoglomus turgidum DSM 6724] Length = 227 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 6/139 (4%) Query: 63 IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122 + +LS I+ +IS R + + S+ + IKSFL +L E+ ++ K Sbjct: 45 LEELSVYSIQKYISSLRERGLKPASIDTHIRAIKSFLHFLYDEGYLEENISAKIKRYKLP 104 Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI- 181 S P LN++Q L LL + W RN I+ G+R+SE L+LT ++ Sbjct: 105 KSYPHILNDEQILN-----LLKVCDKKSWDSFRNYVIVLTFLDTGIRLSELLNLTVNDVN 159 Query: 182 MDDQSTLRIQGKGDKIRIV 200 + +S GKG+K R V Sbjct: 160 LPKRSIFIRSGKGEKDREV 178 >gi|116512034|ref|YP_809250.1| site-specific tyrosine recombinase XerS [Lactococcus lactis subsp. cremoris SK11] gi|122940166|sp|Q02YZ4|XERS_LACLS RecName: Full=Tyrosine recombinase xerS gi|116107688|gb|ABJ72828.1| tyrosine recombinase XerC subunit [Lactococcus lactis subsp. cremoris SK11] Length = 356 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 61/261 (23%), Positives = 109/261 (41%), Gaps = 38/261 (14%) Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-------KKSNSLP-RALNEKQA 134 + ++ R+LS + S KYL + + RN+ KKS +L RA N K Sbjct: 101 VSQTTINRTLSALSSLYKYLTEEVENEDGEPYFYRNVMKKVQTKKKSETLASRAENIKGK 160 Query: 135 LTLVDNV--------------LLHTSHETKWID-ARNSAILYLLYGCGLRISEALSLTPQ 179 L L D L + +H + + + R+ AI+ L+ G+R+SEA+++ + Sbjct: 161 LFLGDETQGFLDYIDSEYEKTLSNRAHSSFFKNKERDLAIIALILASGIRLSEAVNVDLR 220 Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY-------YDLCPFDLNLNIQLPLFRG 232 ++ + + + KG K VP P + Y Y D + L+R Sbjct: 221 DLNLNTMIVEVTRKGGKRDAVPFAPFAKTYFERYLEVRSQRYKTTAKDTAFFV--TLYRD 278 Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 I + ++P ++ + + + + T H LRH+ AT L + + + LGH Sbjct: 279 IASR-IDPSSVEKLVAKYSQ--AFKVRVTPHKLRHTLATRLYAQTNSQVLVSNQLGHAST 335 Query: 293 STTQIYTNV---NSKNGGDWM 310 T +YT++ KN D + Sbjct: 336 QVTDLYTHIINEEQKNALDSL 356 >gi|323170034|gb|EFZ55690.1| integrase [Escherichia coli LT-68] Length = 285 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 5/78 (6%) Query: 229 LFRGIR---GKPLNPGVFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSI 283 LF I+ GK + P + +R + + + +P H LRH+FA+H + NGG++ ++ Sbjct: 191 LFEKIKKRGGKLVFPTLDYSLVRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTL 250 Query: 284 QSILGHFRLSTTQIYTNV 301 Q ILGH ++ TT IY ++ Sbjct: 251 QKILGHAKIQTTMIYAHL 268 >gi|212694179|ref|ZP_03302307.1| hypothetical protein BACDOR_03705 [Bacteroides dorei DSM 17855] gi|224026237|ref|ZP_03644603.1| hypothetical protein BACCOPRO_02993 [Bacteroides coprophilus DSM 18228] gi|253572729|ref|ZP_04850129.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|254882550|ref|ZP_05255260.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA] gi|317480879|ref|ZP_07939960.1| phage integrase [Bacteroides sp. 4_1_36] gi|329965174|ref|ZP_08302105.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] gi|212663245|gb|EEB23819.1| hypothetical protein BACDOR_03705 [Bacteroides dorei DSM 17855] gi|224019473|gb|EEF77471.1| hypothetical protein BACCOPRO_02993 [Bacteroides coprophilus DSM 18228] gi|251837629|gb|EES65720.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|254835343|gb|EET15652.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA] gi|316902964|gb|EFV24837.1| phage integrase [Bacteroides sp. 4_1_36] gi|328523537|gb|EGF50634.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] Length = 415 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 9/138 (6%) Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226 G+R S+ L + + R+ K + V +P +A Y LC + + + Sbjct: 272 GMRHSDIQKLKWSEVEEYNGGYRLNFTQQKTKGVEYMPISPQA----YKLCG-ERKKDGE 326 Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286 L +F G+ P +P R + + + G+ T H RH++AT L+NG D+ ++ + Sbjct: 327 LLVFAGL---P-DPSWISRPLERWVKASGITKHITFHCFRHTYATLQLANGTDIYTVSKM 382 Query: 287 LGHFRLSTTQIYTNVNSK 304 LGH + TTQIY V K Sbjct: 383 LGHTNVKTTQIYAKVIDK 400 >gi|317475117|ref|ZP_07934385.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|316908761|gb|EFV30447.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 421 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 82/173 (47%), Gaps = 23/173 (13%) Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI 199 ++L K ++ ++ ++ GL S+ L+P++++ D++ L I+ K +I Sbjct: 247 IILAKEFTIKRVEQVRDVFIFCVFT-GLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKI 305 Query: 200 ---VPLLPSVRKAILEYYD---LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 +P+LP V +ILE Y C L LP+ R Y++++ Sbjct: 306 MCNIPVLP-VATSILEKYKNVAECTGKL-----LPVLSNQR--------MNSYLKEIADV 351 Query: 254 LGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 GL + H+ RHS+AT + L+NG + ++ +LGH S T+ Y V +N Sbjct: 352 CGLQKNLCTHSARHSYATSICLANGVSMENVAKMLGHADTSVTKHYARVLDQN 404 >gi|291087774|ref|ZP_06347445.2| site-specific DNA tyrosine recombinase, XerD [Clostridium sp. M62/1] gi|291073872|gb|EFE11236.1| site-specific DNA tyrosine recombinase, XerD [Clostridium sp. M62/1] Length = 286 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 9/150 (6%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213 +R S IL L G+RISE + +T + + ++ + ++GK +R+V +LP + +E Sbjct: 130 SRLSLILQTLGATGIRISELVCITREAVSSGRAAVNLKGK---MRVV-ILPKRLREKMEI 185 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATH 272 Y C N P+F GKP++ ++ L + G+ H LRH FA Sbjct: 186 Y--C--RENQIYSGPVFVTRGGKPVDRSNIWSEMKILCKTAGINEKKIFPHNLRHLFARI 241 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 N D+ + ILGH + TT+IYT+++ Sbjct: 242 YYKNNHDIVYLADILGHSSVETTRIYTSIS 271 >gi|307149687|ref|YP_003890995.1| integrase family protein [Cyanothece sp. PCC 7822] gi|306986753|gb|ADN18630.1| integrase family protein [Cyanothece sp. PCC 7822] Length = 286 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 74/291 (25%), Positives = 126/291 (43%), Gaps = 36/291 (12%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 LK Q WL G S + +SY D + FL F T + I Q++ +I + Sbjct: 12 LKLIQMWLH------GKSPDSRRSYMRDIQDFLEF---------THKPIEQITIADIIDW 56 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP-RALNEKQ 133 S + S KR L+ IKS + K ++ + + + + K +++ R L E + Sbjct: 57 DSAL-ALRYAPTSRKRKLAAIKSLFSFAHKNELISTNPGAAVPSPKTKDAISERILTEDE 115 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLRI 190 +L+ + ++ +L LLY R+SE +L ++I D + + + Sbjct: 116 W-----ERMLYAE-----PNRQHQLMLTLLYETRARVSEFCALKWKDIREKPDGAALVTL 165 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 GKG+K R V + P + + +L+ + PLF R K + R ++ Sbjct: 166 FGKGNKTRKVTITPQLWQ-VLKATKAA----DAKGDSPLFLNYRHKAYSTVQVWRIVKAA 220 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +G+ + H +RH+ ATH L NG L Q LGH L+TT Y ++ Sbjct: 221 GERVGI-YGVSPHWIRHTGATHQLINGSPLHLQQQELGHSGLNTTSKYLHI 270 >gi|222034355|emb|CAP77096.1| Phage integrase [Escherichia coli LF82] gi|312601703|gb|ADQ92377.1| integrase [Salmonella phage RE-2010] Length = 338 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 21/142 (14%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 I + G R SEA +L I + T + KG K R VP+ Sbjct: 199 IAKICLATGARWSEAENLQGHQISKYRITY-TKTKGKKNRTVPI---------------- 241 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278 +L +LP RG P F+R ++ R + LP H LRH+FA+H + NGG Sbjct: 242 -SQDLYHELPKNRGKLFTPCRKS-FERAVK--RAGIDLPEGQCTHVLRHTFASHFMMNGG 297 Query: 279 DLRSIQSILGHFRLSTTQIYTN 300 ++ ++ ILGH + T +Y + Sbjct: 298 NILVLRDILGHSDIKMTMVYAH 319 >gi|209916846|ref|YP_002291166.1| phage integrase [Escherichia coli SE11] gi|209915272|dbj|BAG80344.1| phage integrase [Escherichia coli SE11] Length = 332 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 10/160 (6%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK---IRIVPLLPSVRKA 209 D R +L L Y CGLR E ++ +I Q L ++ + K R+VP P + Sbjct: 149 DIRTRFMLALAYDCGLRREELCTVATGDIDPSQRLLTVRAEHTKNRFGRVVPYSPVTGEL 208 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGI----RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + L + + + PLF R +P++ + + +R L LPL +T HT Sbjct: 209 YTAW--LTERRMLSSSRGPLFLSRSPRNRAEPISNWTWSKVVRGLAIKADLPLIST-HTF 265 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 RH T L G D+ I + GH R+ +T +Y ++++++ Sbjct: 266 RHLCLTELARVGWDIHEIAAFAGHRRIQSTLLYIHLSARD 305 >gi|331660306|ref|ZP_08361241.1| resolvase (Protein D) [Escherichia coli TA206] gi|331052573|gb|EGI24609.1| resolvase (Protein D) [Escherichia coli TA206] Length = 260 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 59/231 (25%), Positives = 103/231 (44%), Gaps = 52/231 (22%) Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHT-------SHETKWI-----DARNSAILYLL 163 + +++ + LP A++ AL L ++H + E + D R +L L Sbjct: 8 IHHVRDAAQLPVAIDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVPDLRRKMLLATL 67 Query: 164 YGCGLRISEAL-------SLTPQNIMDDQSTL--------RIQGK---GDKI-RIVPLLP 204 + G RI+EAL SLTP +TL R G+ G + R+VPL Sbjct: 68 WNTGARINEALALTRGDFSLTPPYPFVQLATLKQRTEKAARTAGRTPAGQQTHRLVPLSD 127 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG------- 255 S + L+ + +++P+ R + G+ +++ R +R ++G Sbjct: 128 SWYVSQLQ-------TMVATLKIPMERRNKRTGRTEKARIWEVTDRTVRTWIGEAVAAAA 180 Query: 256 -----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 181 ADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|260885794|ref|ZP_05735780.2| integrase [Prevotella tannerae ATCC 51259] gi|260851599|gb|EEX71468.1| integrase [Prevotella tannerae ATCC 51259] Length = 489 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 73/295 (24%), Positives = 125/295 (42%), Gaps = 32/295 (10%) Query: 30 GLSKLTLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS- 87 +S TLQ Y R FL FL Y I + +L+YT IR F RT +G + Sbjct: 209 SVSAATLQKYNVCRRHFLEFLQNGYRRADIKLS---ELTYTVIREFDIYLRTA-VGQNAN 264 Query: 88 -LKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTLVDNVLLHT 145 +++ K+ + +K + LN R +L+ N R L D ++ Sbjct: 265 TATKTMKTFKTIVILGQKMGVLHHDPFLNHRFHLEPVN---RGF-------LTDEEIMKI 314 Query: 146 SHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVP 201 +++ I ++ C GL + +LT NI +DD+ + + + + Sbjct: 315 ANKDFGIQRLELVRDVFIFSCFTGLAYIDVSNLTLDNIVTLDDKQWIMTKRQKTSVEANV 374 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 LL + K+I+ Y + LF + + N Y++++ G+ + T Sbjct: 375 LLLDIPKSIIAKYSHKTYR-----DGKLFPILSNQKTNS-----YLKEIADLCGIKKNLT 424 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 H RH+FAT LS G + S+ +LGH + TTQIY + +K M ++ D+ Sbjct: 425 FHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQLADK 479 >gi|324016996|gb|EGB86215.1| site-specific recombinase, phage integrase family [Escherichia coli MS 117-3] Length = 227 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 36/180 (20%) Query: 153 DARNSAILYLLYGCGLRISEAL-------SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 D R +L L+ G RI+EAL SLTP +TL+ Q R +P+ Sbjct: 32 DLRRKMLLATLWNTGARINEALALTRGDFSLTPPYPFVQLATLK-QRTEKAARTAGRMPA 90 Query: 206 VRKAILEYYDLCPFD----------LNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRY 253 ++ + L P + +++P+ R + G+ +++ R +R + Sbjct: 91 GQQT----HRLVPLSDAWYVSQLQTMVATLKIPMERRNKRTGRTEKARIWEVTDRTVRTW 146 Query: 254 LG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +G + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 147 IGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 206 >gi|327312659|ref|YP_004328096.1| site-specific recombinase, phage integrase family [Prevotella denticola F0289] gi|326944074|gb|AEA19959.1| site-specific recombinase, phage integrase family [Prevotella denticola F0289] Length = 407 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 17/167 (10%) Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIR 198 L+ +E + + R + IL L CGLR + LT +N+ L+ + KG Sbjct: 240 LIQCHYENENPNVRRAFILCLY--CGLRFCDVKDLTYKNVDYTNRLLKFEQNKTKGHSAH 297 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 ++P + +L P DL+ +I LP + + +++ + G+ Sbjct: 298 SGVIIP-LNDGLLSLIGEAPEDLSSSIFNLPSYESC----------SKSVKRWVKRAGIN 346 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + H RHSFA ++L+NG +++++ S+LGH L T+ YT K Sbjct: 347 KHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393 >gi|300866566|ref|ZP_07111255.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506] gi|300335430|emb|CBN56415.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506] Length = 181 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 75/159 (47%), Gaps = 23/159 (14%) Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR---IQGKGDKIRIVPLLPSVR 207 ++ AR+ + + + C RISEAL+LT Q+I+ TLR +GK R +PL P + Sbjct: 25 FLTARDRLLFAVTFYCACRISEALALTTQDIIGGIVTLRKATTKGK-SATRTLPLHPMLA 83 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRG-KPLNPG----VFQRYIRQLRRYLGLPLSTTA 262 K + Y F LF G G KPL +F+ +++R + Sbjct: 84 KYLKAYNPDVGF---------LFPGREGTKPLTRSQADLIFKDACKRVRIK-----GAST 129 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 H++R + T+L + G LR I I GH LS+ Q Y V Sbjct: 130 HSMRRTALTNLSNAGVPLRVIMEISGHKNLSSLQRYLEV 168 >gi|237717596|ref|ZP_04548077.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4] gi|229453100|gb|EEO58891.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4] Length = 406 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 82/173 (47%), Gaps = 23/173 (13%) Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI 199 ++L K ++ ++ ++ GL S+ L+P++++ D++ L I+ K +I Sbjct: 232 IILAKEFTIKRVEQVRDVFIFCVFT-GLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKI 290 Query: 200 ---VPLLPSVRKAILEYYD---LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 +P+LP V +ILE Y C L LP+ R Y++++ Sbjct: 291 MCNIPVLP-VAASILEKYKNVAECTGKL-----LPVLSNQR--------MNSYLKEIADV 336 Query: 254 LGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 GL + H+ RHS+AT + L+NG + ++ +LGH S T+ Y V +N Sbjct: 337 CGLQKNLCTHSARHSYATSVCLANGVSMENVAKMLGHADTSVTKHYARVLDQN 389 >gi|188587530|ref|YP_001922726.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179352489|gb|ACB86500.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 187 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 74/175 (42%), Gaps = 9/175 (5%) Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-----TLRIQGKGDKIR 198 H K + R+ + L GLRIS+ L L +++D+ + K K + Sbjct: 15 HIKRILKQKNKRDYCLFVLGINTGLRISDLLELKVSDLVDENGKPKKNLELKEKKTGKNK 74 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 + L R AI EY LN +I F+ +G P++ R I + + +G+ Sbjct: 75 QMILNEKARSAIREYVQDSKLSLNDSI----FKSQKGGPISREHAYRVINEAAKAVGIKE 130 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 HTLR +F H NG D+ IQ+I H S T Y + ++ D + I Sbjct: 131 RVGTHTLRKTFGYHAYINGVDISLIQNIFNHSAPSVTLRYIGIEQEDIDDVYINI 185 >gi|158341559|ref|YP_001522723.1| phage integrase [Acaryochloris marina MBIC11017] gi|158311800|gb|ABW33409.1| phage integrase [Acaryochloris marina MBIC11017] Length = 337 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 12/186 (6%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS-YTEIRAFISKRRTQKIGDRS 87 R +S T ++YE D +QF+ +T++ T R L Y +R Q + + Sbjct: 48 REISSNTRKAYERDLKQFMD----WTDKGWHEITARDLDRYKNHLKTEPNQRGQLRRNAT 103 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 + R+L+ ++SF K+L R + L + LK LP+ ++ + L + H Sbjct: 104 INRNLAALQSFFKWLTVRDYIPKDPTLLLEKLKADPVLPQEFSQDEVDKLYQAICDRGFH 163 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207 R+ A+L+L+ GLR SE L + + T+R+ K D + VPLL R Sbjct: 164 AF-----RDRALLHLI-DHGLRASEIHRLNVGDYDGQRITIRV-AKADSVGTVPLLKKAR 216 Query: 208 KAILEY 213 KAI +Y Sbjct: 217 KAIDQY 222 >gi|158340183|ref|YP_001521353.1| phage integrase family protein [Acaryochloris marina MBIC11017] gi|158310424|gb|ABW32039.1| phage integrase family protein [Acaryochloris marina MBIC11017] Length = 190 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 71/159 (44%), Gaps = 15/159 (9%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL----LPSVRKA 209 R+ A+L L++ GLR+SEA+SL +M + + I + KG PL + S++ Sbjct: 38 RDKALLLLMFRHGLRVSEAISLRWDAVMLELKAIGITRLKGSVSGTHPLQADEVESLKDL 97 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 E Y P+ LF G RG L I + L + H LRHS Sbjct: 98 RAEGYP-DPY---------LFVGERGGHLKRHAVTSLINRCAELAQLGIKCHPHMLRHSC 147 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 HL + G D R IQ LGH + T YT +N + G+ Sbjct: 148 GYHLANQGLDTRLIQDWLGHRNIQHTVTYTMLNPRRFGE 186 >gi|9626516|ref|NP_040813.1| integrase [Acholeplasma phage L2] gi|1174961|sp|P42540|VINT_BPL2 RecName: Full=Probable integrase/recombinase; AltName: Full=ORF5 gi|289344|gb|AAA87961.1| unknown [Acholeplasma phage L2] Length = 289 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/174 (26%), Positives = 77/174 (44%), Gaps = 19/174 (10%) Query: 149 TKWIDARNSAILY-----LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPL 202 TK +++ ++I Y LL GLR+SEAL++ ++ +R+ K K R P Sbjct: 119 TKNLNSSKNSITYKSFIRLLLDSGLRVSEALNIKISDMDFKNKVIRVLSSKTRKQRYAPF 178 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 K I E ++ P + I+ + N + + ++L+++L L T Sbjct: 179 SSFSLKYIKELIEVNP-----KRDYLFYNFIKDRQTNKNDIKLFYKRLKKHLNLERIHT- 232 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG-------GDW 309 H R +FA+ L+ NG ++ +Q I H R+ TT Y N K DW Sbjct: 233 HRFRKTFASILIENGLNIDDLQKIFDHSRIETTIKYVQHNEKRALQEYKKYNDW 286 >gi|329769602|ref|ZP_08261006.1| hypothetical protein HMPREF0433_00770 [Gemella sanguinis M325] gi|328838357|gb|EGF87966.1| hypothetical protein HMPREF0433_00770 [Gemella sanguinis M325] Length = 301 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 63/278 (22%), Positives = 125/278 (44%), Gaps = 19/278 (6%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQ-LSYTEIRA 73 K+ QN+L + ++ S T+ SYE D R+ I+L IR L+ I Sbjct: 6 FKDFQNYLID---KKHFSSNTVNSYERDLRKLFIYL---DSNGYDCDDIRSWLTEVCINN 59 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALNE 131 ++ R K +L R++S + + +YL + I + ++++ K + + +E Sbjct: 60 YMEYLRDNKYSAATLARTVSTVHVYSEYLFDKNIIKDKPQIDIKITKDAEHDLVIFTRDE 119 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 + +D + L+ D R+ AI L Y G++ +E ++L +++ + ++ + Sbjct: 120 IAQILDIDTLTLN--------DFRDKAIFELSYSIGIKPTECINLEMKDVNLEIGYIKYR 171 Query: 192 GKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 K D R V L +AI Y D L + ++ + LF G+ ++ + + ++ Sbjct: 172 -KQDGYRTVALNTESIEAIRNYLDALKKHKVPISEESKLFLNHDGEGISRQGYWKIFKKR 230 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288 ++ L L R+S A HLL + ++ +Q ILG Sbjct: 231 QKELELTKELNTMNFRNSLAVHLLEDNVPIQDVQEILG 268 >gi|224369728|ref|YP_002603892.1| XerC [Desulfobacterium autotrophicum HRM2] gi|223692445|gb|ACN15728.1| XerC [Desulfobacterium autotrophicum HRM2] Length = 409 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 54/230 (23%), Positives = 104/230 (45%), Gaps = 19/230 (8%) Query: 86 RSLKRSLSGIKSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 ++++++L I+SFL+YL +++I T ++ M +K +P + + TL+ ++ Sbjct: 176 KTVEQNLCSIRSFLRYLLEKEILKTDLASKTPMIQARKQTRIPSVWTKDELDTLIGAIVR 235 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPL 202 R+ AI+ L GLR+++ +LT + + + Q K + +PL Sbjct: 236 GNPK-----GKRDYAIILLACVLGLRVTDIKNLTFDCFHWETKELIFTQSKTRETVTLPL 290 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPLSTT 261 V A+++Y + P+ P P + ++ Q+ R Y+ + T Sbjct: 291 PSEVGWAVIDYLKYS----RPKVDSPIIFVRHLAPFLPFSEKDHLHQIIRDYMRIAHLPT 346 Query: 262 ------AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 H+LRH+ A+ +L +G L I ILGH +T +Y V+ K Sbjct: 347 LKKRRGMHSLRHTAASRMLEHGTPLVVISDILGHMDTDSTAVYLKVDIKK 396 >gi|323974510|gb|EGB69637.1| phage integrase [Escherichia coli TW10509] Length = 261 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 40/182 (21%) Query: 153 DARNSAILYLLYGCGLRISEAL-------SLTPQNIMDDQSTL------------RIQGK 193 D R +L L+ G RI+EAL SLTP +TL R+ Sbjct: 57 DLRRKMLLATLWNTGARINEALALTRGDFSLTPPYPFVQLATLKQRSEKAARTAGRMPAG 116 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLR 251 R+VPL S + L+ + +++P+ R + G+ +++ R +R Sbjct: 117 QQTHRLVPLSDSWYVSQLQ-------TMVATLKIPMERRNKRTGRTEKARIWEVTDRTVR 169 Query: 252 RYLG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 ++G + T HT RHS+A H+L G L+ +QS++GH +S+T++YT Sbjct: 170 TWIGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYT 229 Query: 300 NV 301 V Sbjct: 230 KV 231 >gi|239907872|ref|YP_002954613.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239797738|dbj|BAH76727.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 374 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 53/195 (27%), Positives = 87/195 (44%), Gaps = 27/195 (13%) Query: 107 ITTESNILN-MRNLKKSNSLPRALNEKQALTLVD--NVLLHTSHETKWIDARNSAILYLL 163 +TT +N M+ KKS PR + LT+ D ++ H +W + + Sbjct: 178 VTTGLTTVNPMKGRKKSREKPRDVQ----LTVDDVKRIMDHAEPHVRWA-------MEVC 226 Query: 164 YGCGLRI--SEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220 + G R SE L+L +I D+ +I K R+VP+ P++ + E Sbjct: 227 FSLGTRPGESELLALKWDHIDFDKGIAKIYASKTRTYRVVPISPTLLGKMKE-------- 278 Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280 + Q RG+P+ G+ ++ R+ G+ + LRH FAT +LS G DL Sbjct: 279 VKTESQSGYVIEWRGQPI--GMIRKGFRRACERAGITYPVRMYDLRHLFATTMLSKGADL 336 Query: 281 RSIQSILGHFRLSTT 295 ++ +LGH +STT Sbjct: 337 AAVSKLLGHSMISTT 351 >gi|71281181|ref|YP_267649.1| phage integrase family site specific recombinase [Colwellia psychrerythraea 34H] gi|71146921|gb|AAZ27394.1| site-specific recombinase, phage integrase family [Colwellia psychrerythraea 34H] Length = 334 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 60/139 (43%), Gaps = 31/139 (22%) Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226 G R EA L +N+ D+ T I+ K K RI+P+ ++ I E Sbjct: 205 GARWGEAEKLLSRNLRDNFITF-IKTKNGKTRIIPISDELKNEIPEK------------- 250 Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLG-----LPLSTTAHTLRHSFATHLLSNGGDLR 281 G+ +F ++ R L LP H LRH+FA+H + NGG++ Sbjct: 251 -------EGR-----LFSDSMKTFRTSLAKTGITLPKGQATHALRHTFASHFMMNGGNIL 298 Query: 282 SIQSILGHFRLSTTQIYTN 300 ++ ILGH R+ T Y + Sbjct: 299 VLKEILGHARIEETMKYAH 317 >gi|291514262|emb|CBK63472.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 407 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 16/151 (10%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYY 214 A ++ LY CGLR + LT +N+ L+ + KG ++P + +L Sbjct: 255 AFIFCLY-CGLRFCDVKDLTYKNVDYGNRLLKFEQSKTKGHSASSGVVIP-LNDGLLSII 312 Query: 215 DLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 P D N L LP + + +++ + G+ + H RHSFA ++ Sbjct: 313 GEAPADKNCLIFDLPTYESC----------CKSVKRWVKRAGIDKHISWHCARHSFAVNI 362 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 L+NG +++++ S+LGH L T+ YT K Sbjct: 363 LNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393 >gi|224025070|ref|ZP_03643436.1| hypothetical protein BACCOPRO_01804 [Bacteroides coprophilus DSM 18228] gi|224018306|gb|EEF76304.1| hypothetical protein BACCOPRO_01804 [Bacteroides coprophilus DSM 18228] Length = 418 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 60/249 (24%), Positives = 102/249 (40%), Gaps = 25/249 (10%) Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-----KKSNSLPRALNEKQ 133 R K R +S +++F++Y +R + + N + K+ LP + ++ Sbjct: 164 RELKRKKRPWHHVVSSVRAFVRYSCERNLLADCNFSRWDRILCLHRPKNPQLPSYYSREE 223 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQG 192 ++D + R+ A+L L GLR S+ + +T N + + L +Q Sbjct: 224 IKKMLDAIDRSCPK-----GKRDYAMLLLAARYGLRASDIVGITYANFEWEFNRLSLVQA 278 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLN-----LNIQLPLFRGIRGKPLNPGVFQRYI 247 K K PL + AI++Y D++ L P R ++P R + Sbjct: 279 KTGKPVSFPLSEEIGSAIIDYIKFGRPDIDSPHVFLEHMAPYQR------ISPQALSRIV 332 Query: 248 RQLRRYLGLPLST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + + +ST H+LRHS A +L NG I ILGH L TT Y V+ K Sbjct: 333 SEWMLAARIDISTRKHGPHSLRHSLAINLFENGESPSVISEILGHSNLLTTMSYVKVDLK 392 Query: 305 NGGDWMMEI 313 + +E+ Sbjct: 393 HLRQCALEV 401 >gi|194447058|ref|YP_002039074.1| resolvase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194358502|gb|ACF56946.1| resolvase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] Length = 268 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 58/226 (25%), Positives = 97/226 (42%), Gaps = 52/226 (23%) Query: 121 KSNSLPRALNEKQALTLVDNVLLHT-------SHETKWI-----DARNSAILYLLYGCGL 168 +S LP A++ AL L ++H + E + D R +L L+ G Sbjct: 22 QSAQLPVAIDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVPDLRRKMLLATLWNTGA 81 Query: 169 RISEAL-------SLTPQNIMDDQSTL------------RIQGKGDKIRIVPLLPSVRKA 209 RI+EAL SLTP +TL R+ R+VPL S + Sbjct: 82 RINEALALTRGDFSLTPPYPFVQLATLKQRTEKAARTAGRMPAGQQTHRLVPLSDSWYVS 141 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG------------ 255 L+ + +++P+ R + G+ +++ R +R ++G Sbjct: 142 QLQ-------TMVATLKIPMERRNKRTGRTEKARIWEVTDRTVRTWIGEAVAAAAADGVT 194 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 195 FSVPITPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240 >gi|310829293|ref|YP_003961650.1| hypothetical protein ELI_3731 [Eubacterium limosum KIST612] gi|308741027|gb|ADO38687.1| hypothetical protein ELI_3731 [Eubacterium limosum KIST612] Length = 304 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 24/157 (15%) Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-----------GKGDKI----------R 198 + L GLR+ E L L ++I + + L ++ GK + R Sbjct: 128 ILLAMSTGLRLGEVLGLRLKDIDFETNVLHVRRNRQRVCNPKTGKHSVVLQSPKTRASRR 187 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +P+ ++ A++ Y D + + + PL G+ + QR Q++ ++GL Sbjct: 188 DIPIHTELKAALIRYLDTQGKN---DPKRPLIAAPSGRAYDARTLQRRFDQIKAHMGLNP 244 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 T H+LRHSF T L G D+R++ LGH ++ T Sbjct: 245 RITFHSLRHSFVTRALELGADMRAVSGFLGHSSIAFT 281 >gi|223587856|emb|CAX36643.1| integron intagrase IntI protein [Arthrobacter sp. JEK-2009] Length = 113 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 36/57 (63%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH +STT Y Sbjct: 57 TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTIDY 113 >gi|195939942|ref|ZP_03085324.1| putative integrase [Escherichia coli O157:H7 str. EC4024] Length = 291 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 21/134 (15%) Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226 G R SEA L ++ + T ++ KG K R VP+ P L Sbjct: 160 GARWSEAEGLKQSQVLPGRITF-VKTKGKKNRTVPISP-----------------QLQAM 201 Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286 LP RG P F I+ R + LP H LRH+FA+H + GG++ +Q I Sbjct: 202 LPKKRGALFSPCYE-AFDAAIK--RAKIELPDGQLTHVLRHTFASHFMMRGGNILVLQKI 258 Query: 287 LGHFRLSTTQIYTN 300 LGH + T Y + Sbjct: 259 LGHSDIKMTMRYAH 272 >gi|315608606|ref|ZP_07883589.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] gi|315249709|gb|EFU29715.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] Length = 410 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 61/223 (27%), Positives = 101/223 (45%), Gaps = 22/223 (9%) Query: 94 GIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 I+ F +L +R +T+ S +L N + LP + + + ++ ++ Sbjct: 174 AIRQFCSFLYERGMTSTNLSYVLTRSNFPQHEKLPSVYSCDEIKQIEGSI-----EQSSA 228 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI 210 + R+ AI L GLR+S+ SLT NI D + + Q K +PLL + +A+ Sbjct: 229 VGKRDYAIFLLASRLGLRVSDIASLTWDNIDWDNGKITLYQYKTKAPMELPLLREIGEAL 288 Query: 211 LEYY-DLCPF----DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST---TA 262 + Y D P ++ L P +R + LN GV R ++ G+ +S+ Sbjct: 289 VTYARDSRPKSHLKEVFLTASAP-YRPMTRISLN-GVITRIMQSS----GIDISSRRFGP 342 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 H++RHS A+++L G L I ILGH TT Y V+ N Sbjct: 343 HSMRHSLASNMLRQGTSLPVISGILGHESTQTTMEYLRVDIVN 385 >gi|182627230|ref|ZP_02954933.1| tyrosine recombinase XerD [Clostridium perfringens D str. JGS1721] gi|177907367|gb|EDT70067.1| tyrosine recombinase XerD [Clostridium perfringens D str. JGS1721] Length = 280 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 71/290 (24%), Positives = 134/290 (46%), Gaps = 42/290 (14%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 N E +RGL+ T + YE + + FL F+ T+++++ +L EI+ + K + Sbjct: 7 NEFIRYEFDRGLTLETTKRYEREIKYFLKFIKIKTDKELS-----ELLEDEIKMCLKKYK 61 Query: 80 T----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 +K ++ + I FL++ + I + + ++K + L+E + L Sbjct: 62 MTLEKEKYKPSTINGKIIIINKFLRFCE---IEVKEKCVK---IQKKPYITNVLSESEYL 115 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L+ NV + R+ I+ +L GLR+SE LSL + I + ++I+GKG Sbjct: 116 RLL-NV---------CDNFRDKVIIRVLANTGLRVSELLSLEIREIYN--GDIQIKGKGA 163 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG----KPLNPGVFQRYIRQ-- 249 K R + K I +Y + + + + +F G +G + +N +F +Y ++ Sbjct: 164 KYRECFCSSEIIKLIKQYIETERLETD---KSKVFTGRKGALKRQAINKMLF-KYAKKAH 219 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 +++ P H+LRH F +L L I++ +GH + TT IYT Sbjct: 220 IKKEKAHP-----HSLRHLFGKNLAERRVSLDVIKTFMGHEDIRTTAIYT 264 >gi|332086087|gb|EGI91249.1| integrase [Shigella boydii 5216-82] Length = 312 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 32/46 (69%) Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +P H LRH+FA+H + NGG++ ++Q ILGH ++ TT IY ++ Sbjct: 250 IPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295 >gi|325280655|ref|YP_004253197.1| integrase family protein [Odoribacter splanchnicus DSM 20712] gi|324312464|gb|ADY33017.1| integrase family protein [Odoribacter splanchnicus DSM 20712] Length = 405 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 75/150 (50%), Gaps = 15/150 (10%) Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQS----TLRIQGKGDKIRIVPLLPSVRKAILE 212 ++ +Y GL + +L P++I +D + ++ + K + + +PLL S+ K ILE Sbjct: 248 DVFIFCVYT-GLAFIDVYNLHPEHISEDGNGNLWIVKPREKTNNLCNIPLL-SIPKQILE 305 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 Y P+ ++ LP+ P N + Y++++ G+ + T HT RHSFA+ Sbjct: 306 KYKDNPYCMDKGTLLPV-------PCNQKM-NSYLKEIADLCGIKKNLTTHTARHSFASV 357 Query: 273 L-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + L+N L ++ +LGH TQ Y V Sbjct: 358 IALANNVSLPNVAKMLGHSSTRMTQHYAKV 387 >gi|298388102|ref|ZP_06997647.1| integrase [Bacteroides sp. 1_1_14] gi|298259132|gb|EFI02011.1| integrase [Bacteroides sp. 1_1_14] Length = 382 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/170 (23%), Positives = 81/170 (47%), Gaps = 17/170 (10%) Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI 199 ++L K ++ ++ ++ GL S+ L+P++++ D++ L I+ K +I Sbjct: 208 IILAKEFTIKRVEQVRDVFVFCIFT-GLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKI 266 Query: 200 ---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 +P+LP + +Y D+ L LP+ R Y++++ G+ Sbjct: 267 MCNIPVLPVAASILDKYKDVAECTGKL---LPVLCNQR--------MNSYLKEIADVCGI 315 Query: 257 PLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + + HT RHS+AT + L+NG + ++ +LGH + T+ Y V +N Sbjct: 316 HKNLSTHTARHSYATSICLANGVSMENVAKMLGHADTNVTKHYARVLDQN 365 >gi|160888483|ref|ZP_02069486.1| hypothetical protein BACUNI_00900 [Bacteroides uniformis ATCC 8492] gi|298374441|ref|ZP_06984399.1| integrase [Bacteroides sp. 3_1_19] gi|156862160|gb|EDO55591.1| hypothetical protein BACUNI_00900 [Bacteroides uniformis ATCC 8492] gi|298268809|gb|EFI10464.1| integrase [Bacteroides sp. 3_1_19] Length = 409 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 76/318 (23%), Positives = 137/318 (43%), Gaps = 42/318 (13%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 +GN ++ +LL +R N + + T+ +Y R F+ TE K++ Sbjct: 100 FQGNAGMQMTLLKLL-DRHNEEMKTRVGVDRAPTTMSTYVYTRRTLAEFIK--TEFKVSD 156 Query: 61 QTIRQLSYTEIRAF----ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116 QL+ IR + + K+R + +++ LS +K + K + + + + Sbjct: 157 LAFGQLNEQFIRDYQDFCLEKKR---LAMETVRHYLSILKKICRIAYKEGHSEKYHFCHF 213 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL---YLLYGC--GLRIS 171 + K+ + P+AL+ + L D + + R S ++ L+ C G + Sbjct: 214 KLPKQKETTPKALSRENFEKLRD---------LEIPEKRRSHVITRDLFLFACYTGTAYA 264 Query: 172 EALSLTPQNIM-DDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227 +A+S+T +N+ DD+ +L ++ K D + V LLP I +Y D + + Sbjct: 265 DAVSITRENLFRDDEGSLWLKYRRKKTDYLGRVKLLPEALALIEKYRD--------DTRT 316 Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSI 286 LF P + + ++ LR GL H RHSFA+ + L G + +I + Sbjct: 317 TLF-----PPQDYHTLRANMKSLRLMAGLSQDLVYHMGRHSFASLVTLEEGVPIETISKM 371 Query: 287 LGHFRLSTTQIYTNVNSK 304 LGH + TTQIY V K Sbjct: 372 LGHSNIKTTQIYARVTPK 389 >gi|229579624|ref|YP_002838023.1| integrase family protein [Sulfolobus islandicus Y.G.57.14] gi|228010339|gb|ACP46101.1| integrase family protein [Sulfolobus islandicus Y.G.57.14] Length = 291 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 59/234 (25%), Positives = 113/234 (48%), Gaps = 48/234 (20%) Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 + KRR + + +++ + ++ FLK+L ++ + I +R + +AL+E Q Sbjct: 77 VEKRRAKSV---TIRYYIIAVRRFLKWLN---VSVKPPIPKVRGKE-----VKALDESQI 125 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-K 193 +L+T TK + I+ LL GLR +E LS+ +++ + + +R++ K Sbjct: 126 -----QKVLNTCKRTK-----DKLIIRLLLDTGLRANELLSVLVKDVDLENNMIRVRNTK 175 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ----RYIRQ 249 + R+V ++ + +Y ++GK L+ +F R+ Sbjct: 176 NGEERVVFFTDETKQLLRKY-------------------MKGKKLDEKLFDITYDALYRK 216 Query: 250 LRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 L+R LG + + H LRH+FAT L G ++ ++Q +LGH + TTQIYT++ Sbjct: 217 LKR-LGNKVEIELRPHILRHTFATLSLKRGINVITLQKLLGHKDIKTTQIYTHL 269 >gi|302387143|ref|YP_003822965.1| integrase family protein [Clostridium saccharolyticum WM1] gi|302197771|gb|ADL05342.1| integrase family protein [Clostridium saccharolyticum WM1] Length = 407 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 34/169 (20%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI-VPLLPSVRKAILEY 213 R+ A+++L+ GLR S+ L+L +NI +S + + I + +P++ + AI++Y Sbjct: 240 RDYALIFLVTQLGLRTSDVLNLKLENINWSESRIEFVQQKTGISVNLPIVEDLGMAIIDY 299 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR----------YL---GLPLST 260 + R K P +F ++I+ R YL G+PL T Sbjct: 300 ----------------LKYGRPKSNEPYLFLKHIQPFDRMKNGHYLITQYLVKAGIPLKT 343 Query: 261 TAH----TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 H +LRH+ A+ LL L I SILGH + +T+ Y +++ +N Sbjct: 344 AKHHGLHSLRHTLASRLLEQDVPLEIISSILGHTTVESTKPYLHIDIEN 392 >gi|228997247|ref|ZP_04156871.1| Tn554-related, transposase A [Bacillus mycoides Rock3-17] gi|228762521|gb|EEM11444.1| Tn554-related, transposase A [Bacillus mycoides Rock3-17] Length = 372 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 55/215 (25%), Positives = 95/215 (44%), Gaps = 31/215 (14%) Query: 96 KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155 K FL ++ K K + N+L ++ +K + +Q T N+ R Sbjct: 145 KGFLHHINKNKPSIR-NVLKVKEPRKRIQILTKEQVRQTFTATTNI-------------R 190 Query: 156 NSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRIQGK-------GDKIRIVPLLPSVR 207 ++ ++ LL+ GLRI EALSL ++ I D Q RI+ + G K++ V Sbjct: 191 DAFLIQLLFETGLRIGEALSLYLEDFIFDYQKGHRIRLRDRGELENGAKLKTGEREIFVS 250 Query: 208 KAILEYYD------LCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLST 260 + +++ YD + D+ N RG G+P+N ++LR+ + + Sbjct: 251 QHLMDLYDDYLYEIIDGLDIETNFVFIKLRGRNMGRPMNYSDVGSLFKRLRKKTKIDIH- 309 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 H LRH+ AT D++ +Q LGH ++ TT Sbjct: 310 -PHLLRHTHATIYYQETKDIKQVQERLGHAQIQTT 343 >gi|332090863|gb|EGI95955.1| integrase [Shigella boydii 5216-82] Length = 323 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 32/46 (69%) Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +P H LRH+FA+H + NGG++ ++Q ILGH ++ TT IY ++ Sbjct: 263 IPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 308 >gi|302867667|ref|YP_003836304.1| integrase family protein [Micromonospora aurantiaca ATCC 27029] gi|302570526|gb|ADL46728.1| integrase family protein [Micromonospora aurantiaca ATCC 27029] Length = 353 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 9/142 (6%) Query: 171 SEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD---LCPFDLNLNI 225 SE L+L ++ D + + + GKG + R VP+ V + + Y D L ++ Sbjct: 189 SELLALRVSSVAGRDGERRVDVAGKGGRPRTVPIEDGVDRVLAGYLDSRRLRFGSRSVRP 248 Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL----PLSTTAHTLRHSFATHLLSNGGDLR 281 P +G+ L G Q + R G+ P H LRH+FAT L +G Sbjct: 249 DAPFLVDRQGEALRRGGLQYLVESCYRRSGIGDRVPRGARLHALRHTFATRLAEDGASAA 308 Query: 282 SIQSILGHFRLSTTQIYTNVNS 303 I +LGH L+++Q Y V + Sbjct: 309 EIMRLLGHASLASSQTYIEVTA 330 >gi|320652975|gb|EFX21175.1| putative integrase [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 309 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 32/46 (69%) Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +P H LRH+FA+H + NGG++ ++Q ILGH ++ TT IY ++ Sbjct: 250 VPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295 >gi|209919029|ref|YP_002293113.1| phage integrase [Escherichia coli SE11] gi|209912288|dbj|BAG77362.1| phage integrase [Escherichia coli SE11] Length = 325 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 5/78 (6%) Query: 229 LFRGIR---GKPLNPGVFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSI 283 LF I+ GK + P + +R + + + +P H LRH+FA+H + NGG++ ++ Sbjct: 231 LFEKIKKRGGKLVFPTLDYSLVRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTL 290 Query: 284 QSILGHFRLSTTQIYTNV 301 Q ILGH ++ TT IY ++ Sbjct: 291 QKILGHAKIQTTMIYAHL 308 >gi|323483758|ref|ZP_08089138.1| phage integrase family Integrase/recombinase [Clostridium symbiosum WAL-14163] gi|323402949|gb|EGA95267.1| phage integrase family Integrase/recombinase [Clostridium symbiosum WAL-14163] Length = 289 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 77/300 (25%), Positives = 125/300 (41%), Gaps = 36/300 (12%) Query: 2 EGNNLP-EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 +G N P E+ S + E QN+L E R T+ Y D + F FL +K + Sbjct: 3 QGQNKPDELFSCTRIAEFQNYLHQEERSRN----TITKYIRDLKVFFTFLDGQPMDKEAL 58 Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 + K TQ S+ L+ + FL +L E L ++ LK Sbjct: 59 LDWK------------KHLTQTHAPASVNSMLASVNKFLDWL-------ELPGLKVKPLK 99 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 + N K+ LT + L + E++ + R S +L + G+R+SE +T ++ Sbjct: 100 IQRQI--FSNPKKELTAEEYRRLIKAAESRQ-NNRLSLLLQTICSTGIRVSELKFITAES 156 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240 ++ +GK RI+ L P + +A+ Y D + +F G PL+ Sbjct: 157 AKTGRAEADCKGK---TRIIFLPPDLCRALRHYCRERGIDAGI-----IFCTKNGCPLDR 208 Query: 241 GVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 + ++ L G+ P H LRH FA + DL + +LGH +STT+IYT Sbjct: 209 SNIWKDMKMLCDSAGVEPGKVFPHNLRHLFARTYYALEKDLSRLADLLGHSNVSTTRIYT 268 >gi|323187008|gb|EFZ72325.1| integrase [Escherichia coli RN587/1] Length = 312 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 32/46 (69%) Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +P H LRH+FA+H + NGG++ ++Q ILGH ++ TT IY ++ Sbjct: 250 VPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295 >gi|315505932|ref|YP_004084819.1| integrase family protein [Micromonospora sp. L5] gi|315412551|gb|ADU10668.1| integrase family protein [Micromonospora sp. L5] Length = 353 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 9/142 (6%) Query: 171 SEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD---LCPFDLNLNI 225 SE L+L ++ D + + + GKG + R VP+ V + + Y D L ++ Sbjct: 189 SELLALRVSSVAGRDGERRVDVAGKGGRPRTVPIEDGVDRVLAGYLDSRRLRFGSRSVRP 248 Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL----PLSTTAHTLRHSFATHLLSNGGDLR 281 P +G+ L G Q + R G+ P H LRH+FAT L +G Sbjct: 249 DSPFLVDRQGEALRRGGLQYLVESCYRRAGIGDRVPRGARLHALRHTFATRLAEDGASAA 308 Query: 282 SIQSILGHFRLSTTQIYTNVNS 303 I +LGH L+++Q Y V + Sbjct: 309 EIMRLLGHASLASSQTYIEVTA 330 >gi|215408000|emb|CAS02327.1| integron integrase [uncultured bacterium] Length = 154 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 35/56 (62%) Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 FQR ++ G+ T HTLRHSFAT LL +G D+R++Q +LGH + TT I Sbjct: 99 TFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVPTTMI 154 >gi|83404838|ref|YP_424852.1| putative resolvase [Escherichia coli] gi|83308563|emb|CAI79535.1| putative resolvase [Escherichia coli] Length = 228 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 40/182 (21%) Query: 153 DARNSAILYLLYGCGLRISEAL-------SLTPQNIMDDQSTL------------RIQGK 193 D R +L L+ G RI+EAL SLTP + L R + Sbjct: 26 DLRRKMLLATLWNTGARINEALVLMRGDFSLTPPYPFVQLAPLKQRTEKAARTAGRTPAR 85 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLR 251 R+VPL S + L+ + +++P+ R + G+ +++ R +R Sbjct: 86 QQTHRLVPLSDSWYVSQLQ-------TMVATLKIPMERRNKRTGRTEKVRIWEVTDRTVR 138 Query: 252 RYLGLPLSTTA------------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 ++G ++T A HT RHS+A H+L G L+ +QS++GH +S+T++YT Sbjct: 139 TWIGEAVATAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYT 198 Query: 300 NV 301 V Sbjct: 199 KV 200 >gi|323169298|gb|EFZ54974.1| integrase [Shigella sonnei 53G] Length = 312 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 5/78 (6%) Query: 229 LFRGIR---GKPLNPGVFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSI 283 LF I+ GK + P + +R + + + +P H LRH+FA+H + NGG++ ++ Sbjct: 218 LFEKIKKRGGKLVFPTLDYSLVRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTL 277 Query: 284 QSILGHFRLSTTQIYTNV 301 Q ILGH ++ TT IY ++ Sbjct: 278 QKILGHAKIQTTMIYAHL 295 >gi|160892657|ref|ZP_02073447.1| hypothetical protein CLOL250_00187 [Clostridium sp. L2-50] gi|156865698|gb|EDO59129.1| hypothetical protein CLOL250_00187 [Clostridium sp. L2-50] Length = 351 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 69/295 (23%), Positives = 125/295 (42%), Gaps = 29/295 (9%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEE-------KITIQTIRQLSYTEIRAFISK-R 78 IE S T Y D + F FL + IT++ I L +I ++ + Sbjct: 35 IENRTSSRTRLGYARDIKTFYNFLCSECPQFRGRKPIDITLEDISALEAEDIEEYLEYLK 94 Query: 79 RTQKIG------DRSLKRSLSGIKSFLKYLKK--RKITTESNILNMRNLKKSNSLPRALN 130 +K G +R++KR LS ++ F YL K R + + ++M + N Sbjct: 95 YYEKDGKVYTNAERAIKRKLSALRVFYAYLYKNDRIKSNPAEKVDMPKIHGKTITRLDTN 154 Query: 131 EK----QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 E A+ D++ H R+ AIL L+ G G+R+SE + + +++ + S Sbjct: 155 EVADFLDAVEYGDHLTKHQQAYHAKTKVRDLAILTLMLGTGIRVSECVGIDLKDVDFNNS 214 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKPLNPGV 242 +++ KG V V A+ +Y + + P N LF + K ++ Sbjct: 215 RVKVTRKGGYESYVYFGDEVTDALTDYLEERKHIEPVSGYEN---ALFLSSQKKRMSVRS 271 Query: 243 FQRYIRQLRRYLGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + +++ + +PL T H LR ++ T L GD+ + +LGH ++TT+ Sbjct: 272 VEMLVKKYSEGV-IPLKHITPHKLRSTYGTELYRETGDIYLVADVLGHSDVNTTR 325 >gi|254303856|ref|ZP_04971214.1| site-specific recombinase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324048|gb|EDK89298.1| site-specific recombinase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 328 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 70/294 (23%), Positives = 133/294 (45%), Gaps = 38/294 (12%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTI----RQLSYTEIRAFISKRRTQKIGDRS 87 S+ T++ Y + FL F+ + E +I + + + ++ A+I DR Sbjct: 33 SEKTVKDYMFHLKDFLHFV-YEGENDFSISEVIPLMQDIEKEDVEAYI----VHLFEDRK 87 Query: 88 LKRS-----LSGIKSFLKYLKKRKITTESNILNM----RNLKKSNSLPRALNEKQALTLV 138 LK++ LS +KS K L+ + + + RN++ N L ++++ + + Sbjct: 88 LKKTSVNTILSALKSLYKELESNGLKNPVKYIKLFKVNRNIE--NVLKVSIDDIRKII-- 143 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLR-IQGKGD 195 L E K+ RN ILY L+ G+R E L+L ++ + +D+ + ++ K Sbjct: 144 --GLYKIDSEKKY---RNITILYTLFYTGMRSKELLTLQFKHYLKREDEYFFKLVETKSG 198 Query: 196 KIRIVPLLPSVRKAILEY--YDLCPFDLNLNI--QLPLFRG--IRGKPLNPGVFQRYIRQ 249 K P+ S+ K + EY Y + + L++ + +F + PL+ I+ Sbjct: 199 KDVYKPIHKSLVKKLEEYKKYLMSMYSLDIKDLDEHYIFSTSILDNSPLSYRSLNAIIQD 258 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + + +G +S H +RH+ AT L +G D+ I+ LGH T++Y N S Sbjct: 259 MGKLIGKDIS--PHNIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARS 310 >gi|193065311|ref|ZP_03046383.1| integrase [Escherichia coli E22] gi|213615968|ref|ZP_03371794.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|192927105|gb|EDV81727.1| integrase [Escherichia coli E22] Length = 312 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 5/78 (6%) Query: 229 LFRGIR---GKPLNPGVFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSI 283 LF I+ GK + P + +R + + + +P H LRH+FA+H + NGG++ ++ Sbjct: 218 LFEKIKKRGGKLVFPTLDYSLVRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTL 277 Query: 284 QSILGHFRLSTTQIYTNV 301 Q ILGH ++ TT IY ++ Sbjct: 278 QKILGHAKIQTTMIYAHL 295 >gi|300693953|ref|YP_003749926.1| integrase/recombinase protein [Ralstonia solanacearum PSI07] gi|299075990|emb|CBJ35301.1| putative integrase/recombinase protein [Ralstonia solanacearum PSI07] Length = 566 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 75/302 (24%), Positives = 118/302 (39%), Gaps = 40/302 (13%) Query: 27 IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 IERG LS LT + D + FL T + + R + E R F T + Sbjct: 256 IERGRPLSSLTTE----DAIAYRGFLRRPTPHERWVGPARPRASVEWRPF-----TNGLS 306 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNSL--PRALNEKQ---ALTL 137 RS+ SLS + + ++L +++ + + +R ++ +L A E + A T+ Sbjct: 307 ARSIAYSLSVLGAMFRWLIQQRYVLANPFAGIKVRGGGRTAALDASHAFTEGEWALARTI 366 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGKG 194 D + E R +L Y GLR SE ++ I D+ L + GKG Sbjct: 367 ADGLEWSYGWEAP-AAQRLRFVLDFAYATGLRASELIAAKLGGIETDRQGDHWLNLIGKG 425 Query: 195 DKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 + V L P R A+ Y L N Q PL + P R +R Sbjct: 426 SRAGKVALPPLARTALDRYLVERGLPVTRARWNPQAPLIGALGLDPDGGITGSRLWSVVR 485 Query: 252 RYLGLPLS---------------TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 R+ + H +RH+ A+H L+ G +L +++ L H +STT Sbjct: 486 RFFWTAADIIEGDHAVLADKLRKASPHWMRHTHASHALARGAELTTVRDNLRHASISTTS 545 Query: 297 IY 298 IY Sbjct: 546 IY 547 >gi|265751257|ref|ZP_06087320.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263238153|gb|EEZ23603.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 409 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 75/318 (23%), Positives = 137/318 (43%), Gaps = 42/318 (13%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 +GN ++ +LL +R N + + T+ +Y R F+ TE K++ Sbjct: 100 FQGNAGMQMTLLKLL-DRHNEEMKARVGVDRAPTTMSTYVYTRRTLAEFIK--TEFKVSD 156 Query: 61 QTIRQLSYTEIRAF----ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116 QL+ IR + + K+R + +++ LS +K + K + + + + Sbjct: 157 LAFGQLNEQFIRDYQDFCLEKKR---LAMETVRHYLSILKKICRIAYKEGHSEKYHFCHF 213 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL---YLLYGC--GLRIS 171 + K+ + P+AL+ + L D + + R S ++ L+ C G + Sbjct: 214 KLPKQKETTPKALSRENFEKLRD---------LEIPEKRRSHVITRDLFLFACYTGTAYA 264 Query: 172 EALSLTPQNIM-DDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227 +A+S+T +N+ DD+ +L ++ K D + V LLP I +Y D + + Sbjct: 265 DAVSITRENLFWDDEGSLWLKYRRKKTDYLGRVKLLPEALALIEKYRD--------DTRA 316 Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSI 286 LF P + + ++ LR GL H RHSFA+ + L G + +I + Sbjct: 317 TLF-----PPQDYHTLRANMKSLRLMAGLSQDLVYHMGRHSFASLVTLEEGVPIETISKM 371 Query: 287 LGHFRLSTTQIYTNVNSK 304 LGH + TTQ+Y V K Sbjct: 372 LGHSNIKTTQVYARVTPK 389 >gi|224538580|ref|ZP_03679119.1| hypothetical protein BACCELL_03474 [Bacteroides cellulosilyticus DSM 14838] gi|224519804|gb|EEF88909.1| hypothetical protein BACCELL_03474 [Bacteroides cellulosilyticus DSM 14838] Length = 397 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 74/148 (50%), Gaps = 16/148 (10%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGK---GDKIRIVPLLPSVRKAILEY 213 A L+ Y G+R S+ +++ P+NI++ Q T I G ++R+ L K I Sbjct: 240 AFLFCCYA-GMRYSDFVNMKPENIVEMHQETWLIYKSIKTGTEVRLPLYLLFNGKGI--- 295 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 L + NL F +R N V + I + R GL + HT RH+ AT L Sbjct: 296 QILNKYQANLQD----FFHLRD---NSNVNKELII-ITRLAGLSKKVSFHTARHTNATLL 347 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + NG ++ ++Q +LGH + TTQIYTNV Sbjct: 348 IYNGVNITTVQKLLGHKSVKTTQIYTNV 375 >gi|167009963|ref|ZP_02274894.1| integrase/recombinase XerC [Francisella tularensis subsp. holarctica FSC200] Length = 75 Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 41/62 (66%), Gaps = 4/62 (6%) Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322 H LRHSFA+H+L + DL +++ +LGH +S+TQI T++N + + ++D+ HP Sbjct: 18 HILRHSFASHVLDSFKDLLAVKDLLGHADISSTQICTHLNFQQ----LASVFDKAHPRAK 73 Query: 323 QK 324 +K Sbjct: 74 KK 75 >gi|293410219|ref|ZP_06653795.1| conserved hypothetical protein [Escherichia coli B354] gi|291470687|gb|EFF13171.1| conserved hypothetical protein [Escherichia coli B354] Length = 333 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 71/169 (42%), Gaps = 25/169 (14%) Query: 134 ALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 A VD + LL + E++ D ++ + G R SEA L ++ + T ++ Sbjct: 169 AFLYVDEIERLLISCDESRNKDL--GVVVRIGLATGARWSEAEGLKQSQVLPCRITF-VK 225 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 KG K R VP+ P L LP RG P F I+ R Sbjct: 226 TKGKKNRTVPISP-----------------QLQAMLPKKRGALFSPCYE-AFDAAIK--R 265 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + LP H LRH+FA+H + GG++ +Q ILGH + T Y + Sbjct: 266 AKIELPDGQLTHVLRHTFASHFMMRGGNILVLQKILGHSDIKMTMRYAH 314 >gi|323186140|gb|EFZ71495.1| integrase [Escherichia coli 1357] Length = 374 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 19/140 (13%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221 +L G R E +L + ++ + T + K K R VP+ S+ + I + F Sbjct: 238 ILLSTGARWGEVAALEQRRVLHCRITFS-KTKNSKNRTVPISESLFEKIKKRGGKLVFP- 295 Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281 + PL R + K + P V P H LRH+FA+H + NGG++ Sbjct: 296 --TLDYPLVRDVI-KTVAPDV--------------PDGQAVHALRHTFASHFMMNGGNIL 338 Query: 282 SIQSILGHFRLSTTQIYTNV 301 ++Q ILGH ++ TT IY ++ Sbjct: 339 TLQKILGHAKIQTTMIYAHL 358 >gi|307565509|ref|ZP_07627991.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307345778|gb|EFN91133.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 407 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 14/159 (8%) Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 ++ C GL + +LTP NI +DD+ + + + + LL + K I+ Y Sbjct: 249 FIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPKNIIAKYSHK 308 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 + LF + + N Y++++ G+ + T H RH+FAT LS G Sbjct: 309 TYR-----DGKLFPILTNQKTNA-----YLKEIADICGIKKNLTFHLARHTFATMSLSKG 358 Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + S+ +LGH + TTQ+Y + +K M ++ D+ Sbjct: 359 VPMESVSKMLGHTNIKTTQLYARITNKKVEHDMEQLADK 397 >gi|288927180|ref|ZP_06421060.1| integrase/recombinase y4rA [Prevotella buccae D17] gi|288336049|gb|EFC74450.1| integrase/recombinase y4rA [Prevotella buccae D17] Length = 426 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 61/223 (27%), Positives = 101/223 (45%), Gaps = 22/223 (9%) Query: 94 GIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 I+ F +L +R +T+ S +L N + LP + + + ++ ++ Sbjct: 190 AIRQFCSFLYERGMTSTNLSYVLTRSNFPQHEKLPSVYSCDEIKQIEGSI-----EQSSA 244 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI 210 + R+ AI L GLR+S+ SLT NI D + + Q K +PLL + +A+ Sbjct: 245 VGKRDYAIFLLASRLGLRVSDIASLTWDNIDWDNGKITLYQYKTKAPMELPLLREIGEAL 304 Query: 211 LEYY-DLCPF----DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST---TA 262 + Y D P ++ L P +R + LN GV R ++ G+ +S+ Sbjct: 305 VTYARDSRPKSHLKEVFLTASAP-YRPMTRISLN-GVITRIMQSS----GIDISSRRFGP 358 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 H++RHS A+++L G L I ILGH TT Y V+ N Sbjct: 359 HSMRHSLASNMLRQGTSLPVISGILGHESTQTTMEYLRVDIVN 401 >gi|260769153|ref|ZP_05878086.1| hypothetical bacteriophage integrase [Vibrio furnissii CIP 102972] gi|260614491|gb|EEX39677.1| hypothetical bacteriophage integrase [Vibrio furnissii CIP 102972] Length = 322 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 58/142 (40%), Gaps = 20/142 (14%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 + L G R EA L + + T + K K R VP+ Sbjct: 183 VAKLCLATGARWGEAEELKGSTVSHGKVTF-LDTKNGKDRTVPI---------------- 225 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278 + +Q + G G+ + Y++ + LP AH LRH+FA+H + NGG Sbjct: 226 ---SQELQDEIVTGKSGRLFKDCYAEFYVQLKQCNFDLPKGQAAHVLRHTFASHFMMNGG 282 Query: 279 DLRSIQSILGHFRLSTTQIYTN 300 ++ ++Q ILGH + T Y + Sbjct: 283 NILTLQKILGHATIQQTMTYAH 304 >gi|226366650|ref|YP_002784433.1| tyrosine recombinase [Rhodococcus opacus B4] gi|226245140|dbj|BAH55488.1| putative tyrosine recombinase [Rhodococcus opacus B4] Length = 209 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 54/181 (29%), Positives = 79/181 (43%), Gaps = 16/181 (8%) Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQST 187 L Q L+D + T W R+ A+ L GLR+SE +SLT ++ + + Sbjct: 4 LTATQVKALLDGI-----DTTTWTGRRDQAMFTLAAHTGLRVSELISLTVDSVHLGTAAH 58 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-PGVFQRY 246 + GKG K R PL + + Y + + + LF RG+PL+ + QR Sbjct: 59 VACTGKGRKHRATPLTTATAALLKTYL----HERHTHPGHALFPNPRGEPLSVDAIGQRL 114 Query: 247 IRQLRRYL-GLP----LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +RR P T HTLRH+ A L+ G D I LGH +TT IY + Sbjct: 115 RTHVRRAARACPELAGTHVTVHTLRHTAAMRFLAAGIDTAVIALWLGHESTATTSIYLHA 174 Query: 302 N 302 + Sbjct: 175 D 175 >gi|189465362|ref|ZP_03014147.1| hypothetical protein BACINT_01711 [Bacteroides intestinalis DSM 17393] gi|189437636|gb|EDV06621.1| hypothetical protein BACINT_01711 [Bacteroides intestinalis DSM 17393] Length = 407 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 16/151 (10%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYY 214 A ++ LY CGLR + LT +N+ L+ + KG ++P + +L Sbjct: 255 AFIFCLY-CGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIP-LNDGLLSII 312 Query: 215 DLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 P D N L LP + + +++ + G+ + H RHSFA ++ Sbjct: 313 GEAPADKNCLIFDLPTYESC----------CKSVKRWVKRAGIDKHISWHCARHSFAVNI 362 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 L+NG +++++ S+LGH L T+ YT K Sbjct: 363 LNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393 >gi|170757613|ref|YP_001781774.1| phage integrase family site specific recombinase [Clostridium botulinum B1 str. Okra] gi|169122825|gb|ACA46661.1| site-specific recombinase, phage integrase family [Clostridium botulinum B1 str. Okra] Length = 354 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 61/247 (24%), Positives = 114/247 (46%), Gaps = 45/247 (18%) Query: 81 QKIGDRSLKRSLSG--IKSFLKYLKK--RKITTESNILN---MRNLKKSNSLPRALNEKQ 133 QKI D+ K L+ + +LK L + E NI++ +N+K +P +K+ Sbjct: 115 QKIVDKVTKEGLNNNTTRYYLKRLNTLFKSAKEEYNIIDSMPTKNIKVGKPVP---TKKK 171 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 ALT DN + + + K + + + +L G+R+ E L +T N+ +T+ + + Sbjct: 172 ALT--DNEIKNLLEDFK--NNKYYLLNFLAVNTGMRLGELLGITWDNVDFKNNTITVNKQ 227 Query: 194 GDKI----------------RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK- 236 KI R +P+ V K ++ + ++ +N+N ++ FR Sbjct: 228 WKKIEKGVWGFGDVKSKNSNRTIPVSNIVIKELMNHRNV----ININNRVLNFRSTNSVC 283 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + G F+++ + T H LRH++AT L++NG D ++ ILGH T + Sbjct: 284 AIVNGKFKKH----------GYTITFHELRHTYATRLIANGVDFKTAAQILGHSVEQTLK 333 Query: 297 IYTNVNS 303 Y++VN+ Sbjct: 334 TYSHVNN 340 >gi|86608861|ref|YP_477623.1| phage integrase family site specific recombinase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557403|gb|ABD02360.1| site-specific recombinase, phage integrase family [Synechococcus sp. JA-2-3B'a(2-13)] Length = 330 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 52/160 (32%), Positives = 71/160 (44%), Gaps = 23/160 (14%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAIL 211 R +A++ L+ CGLR E L LT Q+ I + S L ++ GKG K R V + + + + Sbjct: 160 RYAALIRLMLECGLRAQELLDLTVQDFQISPEGSLLEVRCGKGSKPRAVAVGDPLSELLQ 219 Query: 212 EYYD-----LCPFDLNLNIQLPLFR------GIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 +Y P D PLF RG+PL + + +L P Sbjct: 220 QYLSRERGPCAPTD-------PLFVSQSRCLAYRGRPLTYDGLRHIVLKLTE--PEPGHQ 270 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 T H RHSFAT LL G IQ +LGH + T YT Sbjct: 271 TPHQFRHSFATLLLDRGVAPEHIQHLLGHTTAAMTMRYTQ 310 >gi|194429499|ref|ZP_03062021.1| integrase [Escherichia coli B171] gi|194412463|gb|EDX28763.1| integrase [Escherichia coli B171] gi|195182858|dbj|BAG66428.1| predicted integrase [Escherichia coli O111:H-] Length = 312 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 32/46 (69%) Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +P H LRH+FA+H + NGG++ ++Q ILGH ++ TT IY ++ Sbjct: 250 VPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295 >gi|237710114|ref|ZP_04540595.1| transposase [Bacteroides sp. 9_1_42FAA] gi|229455576|gb|EEO61297.1| transposase [Bacteroides sp. 9_1_42FAA] Length = 320 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 13/165 (7%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKG-DKIRIVPLLP--SVRKAILEYYDL 216 ++ C GL S+ L ++I++D + +R KG K +I+ +P + ILE Y Sbjct: 164 FVFCCFTGLAFSDIHGLRKEHIVEDSNGVRWIRKGRQKTKIMCNIPLMEIPLKILEKYST 223 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 + + P+ + + +N Y+++L G+ + T H RH+FAT L+N Sbjct: 224 NEYCKKHGVLFPV---LCNQKMNA-----YLKELADICGIKKTLTTHVGRHTFATFALAN 275 Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321 G + S+ +LGH + T+ Y V + M +I H SI Sbjct: 276 GVSIESVAKMLGHTNVQMTRHYARVLDRTVIREMSQIKMDFHISI 320 >gi|237727000|ref|ZP_04557481.1| integrase [Bacteroides sp. D4] gi|229433856|gb|EEO43933.1| integrase [Bacteroides dorei 5_1_36/D4] Length = 406 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 70/156 (44%), Gaps = 29/156 (18%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------GDKIRIVPLLPSVR 207 A L+ Y GLR S+ LTP+N +RI GK G +IR+ PL Sbjct: 236 AFLFCCY-TGLRYSDFCQLTPENF------IRINGKRWLYFKSVKTGVEIRL-PL----- 282 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 + E L D + P + P N V R +R+L G+ T H RH Sbjct: 283 HLLFESRALGSLD-----RYPDIGSLAALPCNSEV-NRQLRKLAGLCGIKKRITYHVSRH 336 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + AT L+ G + ++Q +LGH + TTQIY+ + S Sbjct: 337 TCATLLIHQGVAITTVQKLLGHTSVKTTQIYSEILS 372 >gi|218129372|ref|ZP_03458176.1| hypothetical protein BACEGG_00949 [Bacteroides eggerthii DSM 20697] gi|317475338|ref|ZP_07934603.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|217988442|gb|EEC54764.1| hypothetical protein BACEGG_00949 [Bacteroides eggerthii DSM 20697] gi|316908505|gb|EFV30194.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 409 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 75/318 (23%), Positives = 137/318 (43%), Gaps = 42/318 (13%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 +GN ++ +LL +R N + + T+ +Y R F+ TE K++ Sbjct: 100 FQGNAGMQMTLLKLL-DRHNEEMKARVGVDRAPTTMSTYVYTRRTLAEFIK--TEFKVSD 156 Query: 61 QTIRQLSYTEIRAF----ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116 QL+ IR + + K+R + +++ LS +K + K + + + + Sbjct: 157 LAFGQLNEQFIRDYQDFCLEKKR---LAMETVRHYLSILKKICRIAYKEGHSEKYHFCHF 213 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAIL---YLLYGC--GLRIS 171 + K+ + P+AL+ + L D + + R S ++ L+ C G + Sbjct: 214 KLPKQKETTPKALSRENFEKLRD---------LEIPEKRRSHVITRDLFLFACYTGTAYA 264 Query: 172 EALSLTPQNIM-DDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227 +A+S+T +N+ DD+ +L ++ K D + V LLP I +Y D + + Sbjct: 265 DAVSITRENLFWDDEGSLWLKYRRKKTDYLGRVKLLPEALALIEKYRD--------DTRA 316 Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSI 286 LF P + + ++ LR GL H RHSFA+ + L G + +I + Sbjct: 317 TLF-----PPQDYHTLRANMKSLRLMAGLSQDLVYHMGRHSFASLVTLEEGVPIETISKM 371 Query: 287 LGHFRLSTTQIYTNVNSK 304 LGH + TTQ+Y V K Sbjct: 372 LGHSNIKTTQVYARVTPK 389 >gi|299142888|ref|ZP_07036015.1| integrase [Prevotella oris C735] gi|298575617|gb|EFI47496.1| integrase [Prevotella oris C735] Length = 410 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 14/159 (8%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP--LLPSVRKAILEYYDLC 217 ++ C GL + +L P+NI+ I K K + LL + K+I+ Y Sbjct: 249 FVFSCFTGLAYIDVYNLAPENIVTLNGKQWIMTKRQKTSVETNVLLLDIPKSIIAKYSGK 308 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 + LF + + LN Y++++ G+ + T H RH+FAT LS G Sbjct: 309 TYR-----DGKLFPMLTNQKLNS-----YLKEIADICGIKKNLTFHLARHTFATMSLSKG 358 Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + S+ +LGH + TTQIY + +K M E+ D+ Sbjct: 359 VPIESVSKMLGHTNIKTTQIYARITNKKIEHDMDELADK 397 >gi|170700906|ref|ZP_02891892.1| integrase family protein [Burkholderia ambifaria IOP40-10] gi|170134184|gb|EDT02526.1| integrase family protein [Burkholderia ambifaria IOP40-10] Length = 640 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 75/319 (23%), Positives = 130/319 (40%), Gaps = 65/319 (20%) Query: 27 IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 +ERG LS LT + D + F+ T + + +R + R F + + Sbjct: 320 VERGRALSSLTTE----DAVAYRAFIRRPTPHERWVGPVRPRGAPDWRPF-----SGGLS 370 Query: 85 DRSLKRSLSGIKSFLKYLKKRK--ITTESNILNMRNLKKSNSL--PRALNEKQAL---TL 137 RS +LS + + ++L +++ + + +R+ + +N+L A E + L T+ Sbjct: 371 ARSAAYTLSVLGALFRWLIEQRYLLANPFAGVKVRDTRGANALDTSHAFTEGEWLLVRTI 430 Query: 138 VDNVLLHT-----SHETKWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDD---QS 186 D + + + W A + ++L Y GLR SE + T +I D + Sbjct: 431 ADGLEFRKDKPSGAPGSGWTPAAAQRLRFILDFGYATGLRASELVGATLGDIDTDAHGDA 490 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP------ 240 L++ GKG K V L P R A+ Y + +LP+ +R +P P Sbjct: 491 WLKVIGKGSKAARVALPPLARTALDRYL--------VARRLPVT-PVRWRPDTPLIPSLA 541 Query: 241 -------------GVFQRYIRQLRRYLGL--PL------STTAHTLRHSFATHLLSNGGD 279 V QR+ Q + P + H +RH+ ATH L+ G + Sbjct: 542 EDGAAAITSVRLWKVMQRFFAQTAALVDADNPALAQKLRQASPHWMRHTHATHALARGAE 601 Query: 280 LRSIQSILGHFRLSTTQIY 298 L +++ L H +STT IY Sbjct: 602 LTTVRDNLRHASISTTSIY 620 >gi|226200966|ref|YP_002756570.1| resolvase [Escherichia coli] gi|260763809|ref|YP_003237848.1| putative resolvase ResA [Escherichia coli O26:H11 str. 11368] gi|284000234|ref|YP_003377921.1| resolvase [Escherichia coli O26:H-] gi|219881595|gb|ACL51965.1| resolvase [Escherichia coli] gi|257757234|dbj|BAI28735.1| putative resolvase ResA [Escherichia coli O26:H11 str. 11368] gi|283445174|gb|ADB20518.1| resolvase [Escherichia coli O26:H-] gi|323157093|gb|EFZ43219.1| resolvase [Escherichia coli EPECa14] gi|325699393|gb|ADZ45124.1| resolvase [Escherichia coli] Length = 260 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 40/182 (21%) Query: 153 DARNSAILYLLYGCGLRISEAL-------SLTPQNIMDDQSTL--------RIQGK---G 194 D R +L L+ G RI+EAL SLTP +TL R G+ G Sbjct: 57 DLRRKMLLATLWNTGARINEALALTRGDFSLTPPYPFVQLATLKQRTEKAARTAGRTPAG 116 Query: 195 DKI-RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLR 251 + R+VPL S + L+ + +++P+ R + G+ +++ R +R Sbjct: 117 QQTHRLVPLSDSWYVSQLQ-------TMVATLKIPMERRNKRTGRTEKARIWEVTDRTVR 169 Query: 252 RYLG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 ++G + T HT RHS+A H+L G L+ +QS++GH +S+T++YT Sbjct: 170 TWIGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYT 229 Query: 300 NV 301 V Sbjct: 230 KV 231 >gi|157149514|ref|YP_001451592.1| resolvase [Escherichia coli E24377A] gi|157076681|gb|ABV16390.1| resolvase [Escherichia coli E24377A] Length = 237 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 40/182 (21%) Query: 153 DARNSAILYLLYGCGLRISEAL-------SLTPQNIMDDQSTL------------RIQGK 193 D R +L L+ G RI+EAL SLTP + L R + Sbjct: 35 DLRRKMLLATLWNTGARINEALVLMRGDFSLTPPYPFVQLAPLKQRTEKAARTAGRTPAR 94 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLR 251 R+VPL S + L+ + +++P+ R + G+ +++ R +R Sbjct: 95 QQTHRLVPLSDSWYVSQLQ-------TMVATLKIPMERRNKRTGRTEKVRIWEVTDRTVR 147 Query: 252 RYLGLPLSTTA------------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 ++G ++T A HT RHS+A H+L G L+ +QS++GH +S+T++YT Sbjct: 148 TWIGEAVATAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYT 207 Query: 300 NV 301 V Sbjct: 208 KV 209 >gi|148544102|ref|YP_001271472.1| phage integrase family protein [Lactobacillus reuteri DSM 20016] gi|184153472|ref|YP_001841813.1| integrase [Lactobacillus reuteri JCM 1112] gi|227364526|ref|ZP_03848588.1| phage integrase/recombinase [Lactobacillus reuteri MM2-3] gi|325682358|ref|ZP_08161875.1| phage integrase family integrase/recombinase [Lactobacillus reuteri MM4-1A] gi|148531136|gb|ABQ83135.1| phage integrase family protein [Lactobacillus reuteri DSM 20016] gi|183224816|dbj|BAG25333.1| integrase [Lactobacillus reuteri JCM 1112] gi|227070435|gb|EEI08796.1| phage integrase/recombinase [Lactobacillus reuteri MM2-3] gi|324978197|gb|EGC15147.1| phage integrase family integrase/recombinase [Lactobacillus reuteri MM4-1A] Length = 324 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 55/226 (24%), Positives = 98/226 (43%), Gaps = 17/226 (7%) Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + K+ +++R LS SF +L+ +S + + +K S ++ +++ L D Sbjct: 106 SSKVTIDNIRRILS---SFFNWLEDEDYIIKSPVRRIHKVKVSTTVKETYTDEELEKLRD 162 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 N D R+ A++ L G+R+ E + L +I + + GKG K RI Sbjct: 163 NCK----------DIRDLAMIDFLASTGMRVGELVLLNRDDINFQERECIVFGKGSKERI 212 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 + K L+ Y D N + + L+R + L G + ++ L + LG+ Sbjct: 213 -AYFDARAKLHLQKYLYTRTDSNEALFVSLYR--KHTRLTIGGVESRLKHLGKRLGIS-R 268 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 H R + AT + G + +Q +LGH R+ TT Y V +N Sbjct: 269 VYPHKFRRTLATTAIDKGMPIEQLQRLLGHKRIDTTLHYAMVKQQN 314 >gi|237710496|ref|ZP_04540977.1| integrase [Bacteroides sp. 9_1_42FAA] gi|229455218|gb|EEO60939.1| integrase [Bacteroides sp. 9_1_42FAA] Length = 406 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 70/156 (44%), Gaps = 29/156 (18%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------GDKIRIVPLLPSVR 207 A L+ Y GLR S+ LTP+N +RI GK G +IR+ PL Sbjct: 236 AFLFCCY-TGLRYSDFCQLTPENF------IRINGKRWLYFKSVKTGVEIRL-PL----- 282 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 + E L D + P + P N V R +R+L G+ T H RH Sbjct: 283 HLLFESRALGSLD-----RYPDIGSLAALPCNSEV-NRQLRKLAGLCGIKKRITYHVSRH 336 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + AT L+ G + ++Q +LGH + TTQIY+ + S Sbjct: 337 TCATLLIHQGVAITTVQKLLGHTSVKTTQIYSEILS 372 >gi|138895716|ref|YP_001126169.1| transposition regulatory protein TnpA [Geobacillus thermodenitrificans NG80-2] gi|138897050|ref|YP_001127503.1| transposition regulatory protein TnpA [Geobacillus thermodenitrificans NG80-2] gi|196250971|ref|ZP_03149654.1| integrase family protein [Geobacillus sp. G11MC16] gi|134267229|gb|ABO67424.1| Transposition regulatory protein TnpA [Geobacillus thermodenitrificans NG80-2] gi|134268563|gb|ABO68758.1| Transposition regulatory protein TnpA [Geobacillus thermodenitrificans NG80-2] gi|196209535|gb|EDY04311.1| integrase family protein [Geobacillus sp. G11MC16] Length = 379 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 60/231 (25%), Positives = 109/231 (47%), Gaps = 37/231 (16%) Query: 85 DRSLKRSLSG----IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 D+ LK+ +G K FL ++ K K + +IL ++ +K + L +++ L++ Sbjct: 131 DKLLKQVFTGGRTRYKDFLYHVNKNK-PSNRHILKVKEPRKK---LKVLTKEEVQQLIEA 186 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRIQ-------G 192 + R+ ++ LL+ GLRI EALSL ++ I D ++ RI+ Sbjct: 187 T----------TNIRDRLLIQLLFETGLRIGEALSLFIEDFIFDHKNGHRIRLVNRGELE 236 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFD----LNLNIQLPLFRGIRGK----PLNPGVFQ 244 G K++ V +A+++ D ++ LNLN +F +RGK P+ + Sbjct: 237 NGAKLKTGEREIYVSQALMDLLDDYLYEVVDELNLNTNF-VFVKLRGKNVGQPMTYCDVE 295 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 ++LR+ G+ + H LRH+ AT D++ +Q LGH ++ TT Sbjct: 296 ALFKRLRKKTGIHVH--PHLLRHTHATMYYQQTKDIKQVQERLGHSQIQTT 344 >gi|88800923|ref|ZP_01116476.1| resolvase [Reinekea sp. MED297] gi|88776368|gb|EAR07590.1| resolvase [Reinekea sp. MED297] Length = 262 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 25/172 (14%) Query: 163 LYGCGLRISEALSLTPQNIMDDQ--------STLRIQGKGDKIRIVPLLPSVRKAILEYY 214 L+ G RISE L++TP + ++D TL+ + G R+VP++ A+L+ + Sbjct: 91 LWVTGGRISEVLAMTPAHCINDDHLGQGIALPTLK-KRNGQPYRLVPVVDPHYWAMLKRF 149 Query: 215 DLCPFDLNLNIQLPLFR-------GIRGKP--LNPGVFQRY----IRQLRRYLGLPLSTT 261 + P+F+ R KP L QR+ + +LR + L T Sbjct: 150 L---GEHRGGQHAPIFQSRTKTTDAKRAKPKALTSRTVQRWTDDAMERLREHYNPGLRVT 206 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 HT RHSFA + L +G D++ I LGH + T+ Y V S + G M + Sbjct: 207 PHTFRHSFAVNALLHGRDIQVISGWLGHASVRETERYLKVLSLDTGHLMQGV 258 >gi|315651213|ref|ZP_07904243.1| phage integrase family integrase/recombinase [Eubacterium saburreum DSM 3986] gi|315486509|gb|EFU76861.1| phage integrase family integrase/recombinase [Eubacterium saburreum DSM 3986] Length = 327 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 53/251 (21%), Positives = 110/251 (43%), Gaps = 25/251 (9%) Query: 61 QTIRQLSYTEIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116 + ++ + +IR +++ K+++ K+ +++R LS SF +L+ +S + + Sbjct: 86 KDVKHIVTDDIRGYLTEYQEKKKSSKVTIDNIRRILS---SFFAWLEDEDYILKSPVRRI 142 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 +K ++ +++ + DN + R+ AI+ +L G+R+ E + L Sbjct: 143 HKVKTGTNIKETYSDEALELMRDNC----------TELRDLAIIDMLASTGMRVGEMVLL 192 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-- 234 +I ++ + GKG K R+V + + Y + ++ LF ++ Sbjct: 193 NRNDIDFNERECIVFGKGSKERVVYFDARTKIHLQNY-----LNSRIDDNPALFVSLKEP 247 Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 K L G + +R+ + LGL H R + AT + G + +Q +LGH ++ T Sbjct: 248 HKRLKIGGIEVRLREYGKKLGLQ-KVHPHKFRRTLATMAIDKGMPIEQLQQLLGHRKIDT 306 Query: 295 TQIYTNVNSKN 305 T Y V N Sbjct: 307 TLQYAMVKQSN 317 >gi|307564939|ref|ZP_07627459.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307346379|gb|EFN91696.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 410 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 14/159 (8%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP--LLPSVRKAILEYYDLC 217 ++ C GL + +L P+NI+ I K K + LL + K+I+ Y Sbjct: 249 FVFSCFTGLAYIDVYNLAPENIVTLNGKQWIMTKRQKTSVETNVLLLDIPKSIIAKYSGK 308 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 + LF + + LN Y++++ G+ + T H RH+FAT LS G Sbjct: 309 TYR-----DGKLFPMLTNQKLNS-----YLKEIADICGIKKNLTFHLARHTFATMSLSKG 358 Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + S+ +LGH + TTQIY + +K M E+ D+ Sbjct: 359 VPIESVSKMLGHTNIKTTQIYARITNKKIEHDMDELADK 397 >gi|237718794|ref|ZP_04549275.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229451926|gb|EEO57717.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 407 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 16/151 (10%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYY 214 A ++ LY CGLR + LT +N+ L+ + KG ++P + +L Sbjct: 255 AFIFCLY-CGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIP-LNDGLLSII 312 Query: 215 DLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 P D N L LP + + +++ + G+ + H RHSFA ++ Sbjct: 313 GEAPADKNCLIFDLPTYESC----------CKSVKRWVKRAGIDKHISWHCARHSFAVNI 362 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 L+NG +++++ S+LGH L T+ YT K Sbjct: 363 LNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393 >gi|237738614|ref|ZP_04569095.1| phage integrase [Fusobacterium sp. 2_1_31] gi|229424097|gb|EEO39144.1| phage integrase [Fusobacterium sp. 2_1_31] Length = 371 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 52/198 (26%), Positives = 92/198 (46%), Gaps = 40/198 (20%) Query: 133 QALTLVDNVLLHTSHETKWI----DARN--SAILYLLYGCGLRISEALSLTPQNIMDDQS 186 Q +T +N+ + + E + + D R+ ++Y + GLR+ E L L +I D+ Sbjct: 170 QKITKKENINVFSKQEQEMVLRTLDKRDIVDCLIYFTFYTGLRLGEVLGLQWSDIKDNMV 229 Query: 187 TLRIQGKG----DKI------------------RIVPLLPSVRKAILEYYDLCPFDLNLN 224 + Q + DK+ R +PL V++ + + P NL Sbjct: 230 KITRQYRRNVDVDKVDDRKLTYTFKELKTKNSAREIPLPDKVQELLKD----IPRQGNL- 284 Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284 +F + GKP+ P QR I + + L +P + H++RHS+AT L ++++Q Sbjct: 285 ----IFSNL-GKPIEPKKPQRRIASICKKLNIP-HRSFHSIRHSYATRLFEMDIPIKTVQ 338 Query: 285 SILGHFRLSTT-QIYTNV 301 +LGH ++TT IYT+V Sbjct: 339 VLLGHGDIATTMDIYTHV 356 >gi|189346557|ref|YP_001943086.1| integrase/recombinase-related protein [Chlorobium limicola DSM 245] gi|189340704|gb|ACD90107.1| integrase/recombinase-related protein [Chlorobium limicola DSM 245] Length = 64 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/41 (63%), Positives = 30/41 (73%) Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T H LRHS+ATHLL G DLR IQ +LGH TT+IYT+V Sbjct: 9 TLHGLRHSYATHLLEVGTDLRYIQELLGHKSSKTTEIYTHV 49 >gi|86139483|ref|ZP_01058051.1| integrase/recombinase [Roseobacter sp. MED193] gi|85823666|gb|EAQ43873.1| integrase/recombinase [Roseobacter sp. MED193] Length = 274 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 8/119 (6%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDL 216 A L + YG GLR SE +L +I D+ + ++ GKG K R V L P + + + ++ Sbjct: 128 AALSISYGAGLRASEVCNLKISDIDSDRMLIHVELGKGQKDRKVMLSPGLLELLRAWWR- 186 Query: 217 CPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 + LF G + P++P R + G+ T HTLRHSFATHLL Sbjct: 187 -----EARPEGWLFPGKPKINPISPRQLSRAFTSAKHMAGVKKPATLHTLRHSFATHLL 240 >gi|262382819|ref|ZP_06075956.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262295697|gb|EEY83628.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 407 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 16/151 (10%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYY 214 A ++ LY CGLR + LT +N+ L+ + KG ++P + +L Sbjct: 255 AFVFCLY-CGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIP-LNDGLLSII 312 Query: 215 DLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 P D N L LP + + +++ + G+ + H RHSFA ++ Sbjct: 313 GEAPADKNCLIFDLPTYESC----------CKSVKRWVKRAGIDKHISWHCARHSFAVNI 362 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 L+NG +++++ S+LGH L T+ YT K Sbjct: 363 LNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393 >gi|229136804|ref|ZP_04265451.1| Tyrosine recombinase [Bacillus cereus BDRD-ST196] gi|228646665|gb|EEL02853.1| Tyrosine recombinase [Bacillus cereus BDRD-ST196] Length = 357 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 69/304 (22%), Positives = 126/304 (41%), Gaps = 42/304 (13%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK---------RRTQKIGD 85 TL +Y D R F +L +E+ I + I+ +S++++ K + Q + + Sbjct: 43 TLLNYVYDFRVFFNWLL--SEQIIEFKPIKDISFSDLENLKKKDVENFMRFLKLQQNMQN 100 Query: 86 RSLKRSLSGIKSFLKYL------------------KKRKITTESNILNMRNLKKSNSLPR 127 S+ R +S +KS KYL K +I + LN R + + + Sbjct: 101 SSVNRKISALKSLFKYLTSLSENDDGECYFYRNVMAKIEIHKDKETLNARAKRMRSKIFH 160 Query: 128 ALNEKQALTLV--DNVLLHTSHETKWI---DARNSAILYLLYGCGLRISEALSLTPQNIM 182 ++++ L + ++ T H+ + R+ AIL L G G+R+SE L ++I Sbjct: 161 NDDDQEFLNYIKYEHEKSLTKHQLFYFLRDKDRDVAILSLFLGSGIRVSELADLRMEDIN 220 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKP 237 + + + KG+K V + P + +Y ++ P N+ L ++ +P Sbjct: 221 LKERLIDVIRKGNKEDSVWITPIALNDLEKYMEIRDKKYAPGKELKNVFLSKYKHT-AQP 279 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L+ Q + + + G +S H LRHS A L D + LGH T + Sbjct: 280 LSVRAIQDIVEKYTKSFGKRMS--PHKLRHSLANKLYMEEKDSLQVMQQLGHTSQDTALL 337 Query: 298 YTNV 301 YT + Sbjct: 338 YTQL 341 >gi|327314345|ref|YP_004329782.1| site-specific recombinase, phage integrase family [Prevotella denticola F0289] gi|326946202|gb|AEA22087.1| site-specific recombinase, phage integrase family [Prevotella denticola F0289] Length = 408 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 14/159 (8%) Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 ++ C GL + +LTP NI +DD+ + + + + LL + K I+ Y Sbjct: 249 FIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPKRIIAKYSGK 308 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 + LF + + N Y++++ G+ + T H RH+FAT LS G Sbjct: 309 TYR-----DGKLFPILTNQKTNA-----YLKEIADLCGVKKNLTFHLARHTFATMSLSKG 358 Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + S+ +LGH + TTQIY + +K M ++ D+ Sbjct: 359 VPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQLADK 397 >gi|313675312|ref|YP_004053308.1| integrase family protein [Marivirga tractuosa DSM 4126] gi|312942010|gb|ADR21200.1| integrase family protein [Marivirga tractuosa DSM 4126] Length = 413 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 77/157 (49%), Gaps = 21/157 (13%) Query: 162 LLYGC--GLRISEALSLTPQNI---MDDQ---STLRIQGKGDKIRIVPLLPSVRKAILEY 213 ++ C GL + +L+ +NI MD + ST R Q +K+ +PLLP +AILE Sbjct: 250 FVFSCYTGLSFIDVANLSEENIIIGMDGEKWISTHR-QKTFNKV-FLPLLPQA-EAILEK 306 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 Y P + I LP + Y++++ + T H RH+FAT + Sbjct: 307 YKDNPQAQHRGILLPAASNQKTNA--------YLKEIADLCEIKKKLTFHIARHTFATTV 358 Query: 274 -LSNGGDLRSIQSILGHFRLSTTQIYTN-VNSKNGGD 308 L+NG + ++ +LGH +L+ TQIY V +K G D Sbjct: 359 TLTNGVPIETVSKMLGHTKLANTQIYAKVVENKIGTD 395 >gi|227830730|ref|YP_002832510.1| integrase [Sulfolobus islandicus L.S.2.15] gi|229581710|ref|YP_002840109.1| integrase family protein [Sulfolobus islandicus Y.N.15.51] gi|284998243|ref|YP_003420011.1| phage integrase family protein [Sulfolobus islandicus L.D.8.5] gi|227457178|gb|ACP35865.1| integrase family protein [Sulfolobus islandicus L.S.2.15] gi|228012426|gb|ACP48187.1| integrase family protein [Sulfolobus islandicus Y.N.15.51] gi|284446139|gb|ADB87641.1| phage integrase family protein [Sulfolobus islandicus L.D.8.5] Length = 291 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 59/234 (25%), Positives = 113/234 (48%), Gaps = 48/234 (20%) Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 + KRR + + +++ + ++ FLK+L ++ + I +R + +AL+E Q Sbjct: 77 VEKRRAKSV---TIRYYIIAVRRFLKWLN---VSVKPPIPKVRRKE-----VKALDESQI 125 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-K 193 +L+T TK + I+ LL GLR +E LS+ +++ + + +R++ K Sbjct: 126 -----QKVLNTCKRTK-----DKLIIRLLLDTGLRANELLSVLVKDVDLENNMIRVRNTK 175 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ----RYIRQ 249 + R+V ++ + +Y ++GK L+ +F R+ Sbjct: 176 NGEERVVFFTDETKQLLRKY-------------------MKGKKLDEKLFDITYDALYRK 216 Query: 250 LRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 L+R LG + + H LRH+FAT L G ++ ++Q +LGH + TTQIYT++ Sbjct: 217 LKR-LGNKVEIELRPHILRHTFATLSLKRGINVITLQKLLGHKDIKTTQIYTHL 269 >gi|10956075|ref|NP_052162.1| DNA invertase-like protein [Chlorobium limicola] gi|1688244|gb|AAB36935.1| DNA invertase homolog [Chlorobium limicola] Length = 182 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 63/155 (40%), Gaps = 13/155 (8%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILE 212 AR+ +L L++ GLR+SEA L + + L + + PL KAI Sbjct: 26 ARDRCLLLLMFRHGLRVSEACGLQLSQVDAESRVLHVSRLKKGLSTTHPLRTDELKAIRA 85 Query: 213 YYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 + L + ++ F R PL+ IR+ GLPL H LRH Sbjct: 86 W-------LAIRAKMKPDTDDFFLSNRRGPLSRKTAWLAIRKYGELAGLPLPAHPHMLRH 138 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + L G D R IQ LGH + T IYT N Sbjct: 139 ACGFALADQGADTRLIQDYLGHRNIQHTVIYTAAN 173 >gi|237713434|ref|ZP_04543915.1| mobilizable transposon [Bacteroides sp. D1] gi|262407221|ref|ZP_06083769.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|229446416|gb|EEO52207.1| mobilizable transposon [Bacteroides sp. D1] gi|262354029|gb|EEZ03121.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 386 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 70/155 (45%), Gaps = 30/155 (19%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219 L+ C GLR S+ LT + Q GD RIV + EY Sbjct: 239 FLFSCLTGLRKSDIQKLTWSEV---------QKFGDYTRIV--FKQKKTGGQEY------ 281 Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIR------QLRRY---LGLPLSTTAHTLRHSFA 270 L+++ Q + G RG P +P VF + +L+R+ + + T H RH+FA Sbjct: 282 -LDISSQAEKYLGERGNPEDP-VFTGFTYGAWTSLELQRWSMAANINKNLTFHCGRHTFA 339 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 +L G D+ ++ +LGH L+TTQIY V KN Sbjct: 340 VLMLDLGADIYTVSKLLGHKELATTQIYAKVLDKN 374 >gi|226349908|ref|YP_002777021.1| putative integrase/recombinase [Rhodococcus opacus B4] gi|226245823|dbj|BAH47090.1| putative integrase/recombinase [Rhodococcus opacus B4] Length = 329 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 76/305 (24%), Positives = 119/305 (39%), Gaps = 44/305 (14%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L+ L +R S+ T+ +Y R L F+ T + L I AF+ Sbjct: 12 FLERLSTQRRASEHTIAAYRDAMRLLLAFMEQRTHRAPSRLDWTDLDADAICAFLDHLEK 71 Query: 81 QKIGD-RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 + R+ L+ I+S Y R + I + ++P +K + +D Sbjct: 72 DRANSARTRNARLTAIRSLFSYAALRHPEHAALIAQVL------AIPPKRFDKAIVCFLD 125 Query: 140 N----VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-LRIQGKG 194 +L + + W R+ A++ L GLR+SE L L +++ S +R GKG Sbjct: 126 EPEAAAMLAAADRSTWAGRRDHALMTLAMQTGLRVSELLGLNCGDVVTGTSGHVRCVGKG 185 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR---------GKPLNPGVFQR 245 K R VP+ SVR +N+ L G R G+ L+ QR Sbjct: 186 RKERSVPMTESVRSV-------------MNVWLIERAGQRDDAAFCTRTGRRLSVDAVQR 232 Query: 246 ----YIRQLRR----YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 Y Q R+ +G LS H RH+ A LL G D I LGH + +T Sbjct: 233 RVNIYAAQARQSCPSLVGKHLSP--HVFRHTCAMTLLHAGVDTTVIALWLGHADVRSTTA 290 Query: 298 YTNVN 302 Y + + Sbjct: 291 YLHAD 295 >gi|329960376|ref|ZP_08298801.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] gi|328532814|gb|EGF59596.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] Length = 407 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 16/151 (10%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYY 214 A ++ LY CGLR + LT +N+ L+ + KG ++P + +L Sbjct: 255 AFIFCLY-CGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIP-LNDGLLSII 312 Query: 215 DLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 P D N L LP + + +++ + G+ + H RHSFA ++ Sbjct: 313 GEAPADKNCLIFDLPTYESC----------CKSVKRWVKRAGIDKHISWHCARHSFAVNI 362 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 L+NG +++++ S+LGH L T+ YT K Sbjct: 363 LNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393 >gi|227827993|ref|YP_002829773.1| integrase family protein [Sulfolobus islandicus M.14.25] gi|229585262|ref|YP_002843764.1| integrase family protein [Sulfolobus islandicus M.16.27] gi|238620221|ref|YP_002915047.1| integrase family protein [Sulfolobus islandicus M.16.4] gi|227459789|gb|ACP38475.1| integrase family protein [Sulfolobus islandicus M.14.25] gi|228020312|gb|ACP55719.1| integrase family protein [Sulfolobus islandicus M.16.27] gi|238381291|gb|ACR42379.1| integrase family protein [Sulfolobus islandicus M.16.4] Length = 291 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 59/234 (25%), Positives = 113/234 (48%), Gaps = 48/234 (20%) Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 + KRR + + +++ + ++ FLK+L ++ + I +R + +AL+E Q Sbjct: 77 VEKRRAKSV---TIRYYIIAVRRFLKWLN---VSVKPPIPKVRRKE-----VKALDESQI 125 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-K 193 +L+T TK + I+ LL GLR +E LS+ +++ + + +R++ K Sbjct: 126 -----QKVLNTCKRTK-----DKLIIRLLLDTGLRANELLSVLVKDVDLENNMIRVRNTK 175 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ----RYIRQ 249 + R+V ++ + +Y ++GK L+ +F R+ Sbjct: 176 NGEERVVFFTDETKQLLRKY-------------------MKGKKLDEKLFDITYDALYRK 216 Query: 250 LRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 L+R LG + + H LRH+FAT L G ++ ++Q +LGH + TTQIYT++ Sbjct: 217 LKR-LGNKVEIELRPHILRHTFATLSLKRGINVITLQKLLGHKDIKTTQIYTHL 269 >gi|225175140|ref|ZP_03729136.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] gi|225169316|gb|EEG78114.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] Length = 386 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 70/267 (26%), Positives = 120/267 (44%), Gaps = 56/267 (20%) Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLK-YLKKRKITTESNILNMRNLKKSNSLPRAL 129 ++ + +++ ++ RS++ + I + LK LK+R I+ + L K+ + Sbjct: 118 VQKLLDEKQGGELSPRSVRYIHTTINTALKSALKQRIISFNPADAELLELPKNTKI---- 173 Query: 130 NEKQALTLVD-NVLLHTSHETKWIDARNSAILYLL-YGCGLRISEALSLTPQNIMDDQST 187 E + LT D + T+ E K+ ++ Y+L G+R E L L +NI +Q T Sbjct: 174 KEVKPLTQDDVKAFIATAKEDKF------SVAYILSLALGMRKGEVLGLQWENIDFEQKT 227 Query: 188 L-------RIQGKG---------DKIRIVPLLPS------------------VRKAILEY 213 L R++GKG R+V LLP + KA +Y Sbjct: 228 LTIKNNLTRVKGKGLVLTTPKTASSNRVV-LLPEKILTLLSEHGRKQAVEREIAKASGKY 286 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 + FD N+ +F GKP+ P F+R +++ GL + H+LRHS+ T Sbjct: 287 SEAEGFD-NM-----VFTYEEGKPVCPRYFERKFKKVLEKAGLSQAGL-HSLRHSYGTLQ 339 Query: 274 LSNGGDLRSIQSILGHFRLS-TTQIYT 299 G ++++IQ+ LGH + S T +YT Sbjct: 340 NEAGVNMKAIQATLGHSKASFTMSVYT 366 >gi|319641592|ref|ZP_07996279.1| hypothetical protein HMPREF9011_01877 [Bacteroides sp. 3_1_40A] gi|317386792|gb|EFV67684.1| hypothetical protein HMPREF9011_01877 [Bacteroides sp. 3_1_40A] Length = 386 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 70/155 (45%), Gaps = 30/155 (19%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219 L+ C GLR S+ LT + Q GD RIV + EY Sbjct: 239 FLFSCLTGLRKSDIQKLTWSEV---------QKFGDYTRIV--FKQKKTGGQEY------ 281 Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIR------QLRRY---LGLPLSTTAHTLRHSFA 270 L+++ Q + G RG P +P VF + +L+R+ + + T H RH+FA Sbjct: 282 -LDISSQAEKYLGERGNPEDP-VFTGFTYGAWTSLELQRWSMAANINKNLTFHCGRHTFA 339 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 +L G D+ ++ +LGH L+TTQIY V KN Sbjct: 340 VLMLDLGADIYTVSKLLGHKELATTQIYAKVLDKN 374 >gi|297521334|ref|ZP_06939720.1| integrase [Escherichia coli OP50] Length = 111 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%) Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 F+R ++ ++ LP H LRHSFATH + NGG + ++Q ILGH R+ T +Y + Sbjct: 25 FRRTMKAIKP--DLPTGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAH 80 >gi|167761671|ref|ZP_02433798.1| hypothetical protein BACSTE_00005 [Bacteroides stercoris ATCC 43183] gi|167700458|gb|EDS17037.1| hypothetical protein BACSTE_00005 [Bacteroides stercoris ATCC 43183] Length = 352 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 96/204 (47%), Gaps = 31/204 (15%) Query: 102 LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161 +K KI T N K ++ +P L + + L+L D H + K +DA L+ Sbjct: 147 FRKYKIKTVEN-------KHTHLVPEELEQLERLSLTDK---HMKLQ-KSLDA----FLF 191 Query: 162 LLYGCGLRISEALSLTPQNIMD-DQSTLRIQGK---GDKIRIVPLLPSVRKAILEYYDLC 217 Y G+R S+ +L+ +NI+D +Q T I G ++R+ L K I+ L Sbjct: 192 CCYA-GMRYSDFTNLSKKNIVDINQETWLIYKSVKTGTEVRLPLYLLFAGKGIV---ILN 247 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 + NL FR +N + + + GL + HT RH+ AT L+ NG Sbjct: 248 KYRNNLE---DFFRLRDNSNINKDLII-----IAKLAGLSKKISFHTARHTNATLLIYNG 299 Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301 ++ ++Q +LGH + TTQ+YTN+ Sbjct: 300 VNITTVQKLLGHKSVKTTQVYTNI 323 >gi|323530187|ref|YP_004232339.1| hypothetical protein BC1001_5915 [Burkholderia sp. CCGE1001] gi|323387189|gb|ADX59279.1| Protein of unknown function DUF3701 [Burkholderia sp. CCGE1001] Length = 570 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 69/306 (22%), Positives = 129/306 (42%), Gaps = 40/306 (13%) Query: 27 IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 +ERG LS LT D + FL T + + +R S + R F + + Sbjct: 256 VERGRALSSLTTD----DAIVYRAFLRRPTPRERWVGPLRPRSSPDWRPFAAN-----LA 306 Query: 85 DRSLKRSLSGIKSFLKYLKKRK--ITTESNILNMRNLKKSNSL--PRALNEKQALTLVDN 140 S+ +LS + + ++L +++ + + + ++ KK++ RA +E + LV Sbjct: 307 ASSVAHALSILNALFRWLIEQRYVLANPFSGVKVKGGKKTSDFDSSRAFSEWE-WNLVRT 365 Query: 141 VLLHTSHETKWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDD---QSTLRIQGKG 194 + W + ++L + GLR SE + + ++ D + L++ GKG Sbjct: 366 IAQRLEWSHGWSKPSAERLRFILDFGFATGLRASELVGASLGHVTTDSHGEHWLKVTGKG 425 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLR 251 K V L P A+ Y L + +P L + G+ ++ R L+ Sbjct: 426 HKTGRVALPPLAWDALTRYLTLRELPVTPARWVPETSLVGNLAGESMSAITGVRLWAILK 485 Query: 252 RYLGL----------PLS-----TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 R+ L PL+ + H +RH+ ATH L +G +L +++ L H +STT Sbjct: 486 RFFRLAADQIAVDHPPLAGKLRRASPHWMRHTHATHALEHGAELTTVRDNLRHASISTTS 545 Query: 297 IYTNVN 302 +Y + + Sbjct: 546 LYLHAD 551 >gi|182418902|ref|ZP_02950159.1| site-specific recombinase, phage integrase family [Clostridium butyricum 5521] gi|237667033|ref|ZP_04527017.1| site-specific recombinase, phage integrase family [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377185|gb|EDT74753.1| site-specific recombinase, phage integrase family [Clostridium butyricum 5521] gi|237655381|gb|EEP52937.1| site-specific recombinase, phage integrase family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 364 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 123/290 (42%), Gaps = 56/290 (19%) Query: 51 AFYTEEKITIQTIRQLSYTE-IRAF----------ISKRRTQKIGD---------RSLKR 90 AF +K+ I+ SY++ ++ F I K QK+ D +LK Sbjct: 80 AFLDHKKLYIKACTYTSYSQNLKVFKDLNDKKIIDIKKVDVQKVFDVLLEKKSKYNTLKD 139 Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150 + K+ K+ N +N++ KK +L +AL + + +DNVL + + K Sbjct: 140 YRGTLNLLFKFYKENYDPNYENNINIKLPKKDATLKKALTKSE----LDNVL--SFFKLK 193 Query: 151 WIDARNSAILYLLYG-CGLRISEALSLTPQNIMDDQSTLRIQ--------GKGDKI---- 197 + I L+ G CGLR SE + L +I TL ++ G+ + I Sbjct: 194 PPTGQWQYITCLIAGTCGLRFSEIMGLKWNDIDSVNLTLTVERQYRQNLNGEWEFITPKS 253 Query: 198 ----RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 RI+PL S + + +Y P D+N I NP Q Y+ L R Sbjct: 254 KNSTRIIPLPKSTYEELKKYRTEQPTDINNRIVTK----------NPRTAQ-YL--LNRS 300 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 L + + H LRH++ T L++N D +++ GH T ++Y++VN Sbjct: 301 LNKIANISLHELRHTYITLLVANNVDFKTVAQFAGHDVEQTLKVYSHVND 350 >gi|160876042|ref|YP_001555358.1| integrase family protein [Shewanella baltica OS195] gi|160861564|gb|ABX50098.1| integrase family protein [Shewanella baltica OS195] Length = 318 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 23/144 (15%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 I+ + G R SEA +LT ++DD+ I K K R +P+ R Sbjct: 182 IVKICLSTGARWSEAQNLTSSQLLDDRINF-INTKNGKNRTIPITREFRA---------- 230 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNG 277 +LP G L + +++ L+ + LP +H LRH+FA+H + NG Sbjct: 231 -------ELPNGNG----RLFTDCYHQFLAVLKSSGIELPKGQASHVLRHTFASHFVMNG 279 Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301 G++ ++Q ILGH + T Y ++ Sbjct: 280 GNILTLQKILGHGSIQMTMRYAHL 303 >gi|317476899|ref|ZP_07936142.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|316907074|gb|EFV28785.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 368 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 70/148 (47%), Gaps = 21/148 (14%) Query: 163 LYGC--GLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 L+ C GLRIS+ L LT NI D+ +RI +K LP +A+ +LC Sbjct: 225 LFSCMTGLRISDILQLTWDNIEVGPDNGYYIRICT--EKTETEATLPISNEAL----ELC 278 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 + + L R + +PL +Q G+ T H RHS+A +S G Sbjct: 279 GIPDSGRVFKGLTRAMTNQPL---------KQWISEAGIKKHITFHCFRHSYAVIQISLG 329 Query: 278 GDLRSIQSILGHFRLSTTQIYTN-VNSK 304 D+ ++ +L H +STTQIY + VNSK Sbjct: 330 TDIYTVSKMLTHKNVSTTQIYADLVNSK 357 >gi|225020746|ref|ZP_03709938.1| hypothetical protein CORMATOL_00753 [Corynebacterium matruchotii ATCC 33806] gi|224946519|gb|EEG27728.1| hypothetical protein CORMATOL_00753 [Corynebacterium matruchotii ATCC 33806] Length = 294 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 54/150 (36%), Positives = 71/150 (47%), Gaps = 16/150 (10%) Query: 153 DARNSAILYLLYGCGLRISE--ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210 D R + I+ L GLR SE L +T L I GKG K R++P ++ AI Sbjct: 135 DQRPAVIIRLAAELGLRRSEIACLHMTDLKGHVGNRWLVIHGKGGKQRVLPCPETLAHAI 194 Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 D N + F G L+P R+I +L + L S T HTLRH FA Sbjct: 195 KSVSS----DDNGWV----FPGKIDGHLSP----RWIAKLATRV-LAESWTLHTLRHRFA 241 Query: 271 THLLSNGG-DLRSIQSILGHFRLSTTQIYT 299 T + GG DL +IQ +GH ++TTQ YT Sbjct: 242 TVAYNEGGHDLLTIQQAMGHENIATTQRYT 271 >gi|186473761|ref|YP_001861103.1| integrase family protein [Burkholderia phymatum STM815] gi|184196093|gb|ACC74057.1| integrase family protein [Burkholderia phymatum STM815] Length = 495 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 104/252 (41%), Gaps = 22/252 (8%) Query: 76 SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALNEKQ 133 + R +Q +G+RS KR+L+ ++S L YL + T + + + + P + Sbjct: 228 TPRASQVLGERSQKRALAVVRSVLSYLWRTGYLTANPGAGLGDTAAAREKFAPDRILPAG 287 Query: 134 ALTLVDNVL-LHTSHETKWIDA-RNSAILYLLYGCGLRISEAL--SLTPQNIM-DDQSTL 188 A+ D+ L + E + I R +AI+ G+R+ E P+ + DD TL Sbjct: 288 AVHACDSWLRARLNPEGRPIAVMRRAAIVATYRFTGIRLDELAWHDGYPRVVTGDDGWTL 347 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 +++GKG + R VPL + +Y C P LPL RG R L P R Sbjct: 348 QVRGKGRRERAVPLPGPCVIFLQQYRQACGLPPTPPPRENLPLIRGQRHDALGPSGLYRE 407 Query: 247 IRQLRRYLGLPLSTT------------AHTLRHSFATHLLSNGG-DLRSIQSILGHFRLS 293 +R + + T H LRH L+ + L Q +LGH ++ Sbjct: 408 VRAAFAEMAAAVPPTEATTRLALQEASPHWLRHLVGKTLVVDANVPLPVAQMLLGHQSVA 467 Query: 294 TTQIYTNVNSKN 305 TT Y ++ Sbjct: 468 TTAGYARADASQ 479 >gi|73853284|ref|YP_308780.1| site-specific recombinase [Escherichia coli] gi|73476868|gb|AAZ76483.1| Site-specific recombinase [Escherichia coli] Length = 268 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 57/235 (24%), Positives = 97/235 (41%), Gaps = 70/235 (29%) Query: 121 KSNSLPRALNEKQALTLVDNVLLHT-------SHETKWI-----DARNSAILYLLYGCGL 168 + SLP A++ AL L ++H + E + D R +L L+ G Sbjct: 22 QPASLPVAIDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVPDLRRKMLLATLWNTGA 81 Query: 169 RISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL----------------- 211 RI+EAL+LT +GD +VP P V+ A L Sbjct: 82 RINEALALT---------------RGD-FSLVPPYPFVQLATLKQRTEKAARTAGRTPAG 125 Query: 212 -EYYDLCPFD----------LNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG--- 255 + + L P + +++P+ R + G+ +++ R +R ++G Sbjct: 126 QQTHRLVPLSDSWYVSQLQTMVATLKIPMERRNKRTGRTEKARIWEVTDRTVRTWIGEAV 185 Query: 256 ---------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 186 AAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240 >gi|53711947|ref|YP_097939.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|52214812|dbj|BAD47405.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] Length = 406 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 83/173 (47%), Gaps = 23/173 (13%) Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI 199 ++L K ++ ++ ++ GL S+ L+P++++ D++ L I+ K +I Sbjct: 232 IILAKEFTIKRVEQVRDVFIFCVFT-GLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKI 290 Query: 200 ---VPLLPSVRKAILEYYD---LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 +P+LP V +ILE Y C L LP+ R Y++++ Sbjct: 291 MCNIPVLP-VAVSILEKYKNVAECTGKL-----LPVLSNQR--------MNSYLKEIADV 336 Query: 254 LGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 G+ + + HT RHS+AT + L+NG + ++ +LGH S T+ Y V +N Sbjct: 337 CGIHKNLSTHTARHSYATSICLANGVSMENVAKMLGHADTSITKHYARVLDQN 389 >gi|163784459|ref|ZP_02179335.1| Phage integrase [Hydrogenivirga sp. 128-5-R1-1] gi|159880274|gb|EDP73902.1| Phage integrase [Hydrogenivirga sp. 128-5-R1-1] Length = 283 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 68/144 (47%), Gaps = 17/144 (11%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLC 217 + L G+R+ E L ++I ++ + ++ K R++P+ P+++K I+ Y Sbjct: 142 VFRLFIYTGMRLGEITRLKWEHINLNREIITVEKSKSFHSRVIPIHPTLKKDIIRYKK-- 199 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 D+ + P Q ++ R G P H LRH+FA+ ++ G Sbjct: 200 --DIGKVV-----------PFKRRYIQERLKNYFRKAGYP-DLRVHDLRHTFASLMVMAG 245 Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301 DL+++Q +LGH TT+IY ++ Sbjct: 246 VDLKTVQELLGHQSYRTTEIYAHL 269 >gi|83643306|ref|YP_431741.1| integrase [Hahella chejuensis KCTC 2396] gi|83631349|gb|ABC27316.1| Integrase [Hahella chejuensis KCTC 2396] Length = 336 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 70/165 (42%), Gaps = 32/165 (19%) Query: 153 DARNSAILYLLYGC---GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 +++N +L + C G R EA SL Q + + I+ K K R VP+ + K Sbjct: 185 ESKNPNVLVISKICLSTGARWGEAESLQAQQVKQGKIHF-IKTKNSKSRAVPISDELSKE 243 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKP----LNPGVFQRYIRQL--RRYLGLPLSTTAH 263 I I G+P L PG ++ R R + LP H Sbjct: 244 I----------------------IAGRPRFGRLFPGTSKQAFRLAVERSGINLPDGQMTH 281 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 LRH+FA+H + N G++ ++ ILGH LS T Y + K+ D Sbjct: 282 VLRHTFASHYMINDGNILKLKDILGHKTLSMTIRYAKLAPKHLAD 326 >gi|323190945|gb|EFZ76212.1| integrase [Escherichia coli RN587/1] Length = 346 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 24/144 (16%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 ++ + G R +EA +L I + T ++ KG + R +PL Sbjct: 201 VVKICLATGARWNEAATLKSSQIAGGKVTF-VKTKGKRNRTIPL---------------- 243 Query: 219 FDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSN 276 D L +LP +G + KP + + L R + LP H LRH+FA+H + N Sbjct: 244 -DDELLSELPETKGALFPKP----CYNAFRSALERAGIELPSGQLTHVLRHTFASHFMMN 298 Query: 277 GGDLRSIQSILGHFRLSTTQIYTN 300 GG++ +Q ILGH ++ T Y + Sbjct: 299 GGNILVLQKILGHADITMTMRYAH 322 >gi|228911927|ref|ZP_04075666.1| Phage integrase [Bacillus thuringiensis IBL 200] gi|228847722|gb|EEM92637.1| Phage integrase [Bacillus thuringiensis IBL 200] Length = 319 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 76/295 (25%), Positives = 126/295 (42%), Gaps = 57/295 (19%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 S+ T Q Y D FL ++ K TI TI++LS+ ++ + + ++K +L++ Sbjct: 34 SERTKQQYLHDLSHFLHYI------KETIGTIQELSHNDMEIYFYEL-SKKYASTTLRKK 86 Query: 92 LSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVD-----NVLLH 144 + ++ FLKY+ ++ S+ L ++KK + R L ++ ++D N ++ Sbjct: 87 KTVVQQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLYPEEVTQILDELKKSNYFVY 146 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIV 200 T+ +LL GLRI E + +++ S LR+ GKG+K R V Sbjct: 147 TA-------------FFLLTTTGLRIEEIATAKWADLVFHSSLSAYLLRVVGKGNKSREV 193 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQ-----LPLFRG--IRGKPLNPGV----------F 243 + A+ L L+ LP G R L+ V F Sbjct: 194 RIFEDTLDALCHVRSLRKQTTELDASSTSAFLPKADGSNYRADYLSSLVAKKIEEINLDF 253 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 RY RQ R T HT RH A +L+ G +L+ I+ LGH + TT+ Y Sbjct: 254 LRY-RQDR--------ITPHTCRHFMANYLMEKGVELKKIRDYLGHESIMTTERY 299 >gi|172055007|ref|YP_001806334.1| integrase-recombinase protein [Cyanothece sp. ATCC 51142] gi|171701288|gb|ACB54268.1| integrase-recombinase protein [Cyanothece sp. ATCC 51142] Length = 316 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 69/296 (23%), Positives = 130/296 (43%), Gaps = 35/296 (11%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE----IRAFISKRRT 80 L +E S +T + YE D R F ++ ++ + ++S ++ + A+ + + Sbjct: 19 LWLEDKSSAMTRREYEKDLRYFFKVMSGKEVDEELVSAFLKVSQSQANAALMAYKATLKK 78 Query: 81 QKIGDRSLKRSLSGIKSFL---------KYLKKRKITTESNILNMRNLKKSNSLPRALNE 131 +++ ++ R +S +KSF+ +Y K +++E ++ + ++ +P L E Sbjct: 79 RELAPTTINRKISAVKSFISTANRLGLCQYSLKDAVSSE----KLKPYRDTSGIP--LTE 132 Query: 132 -KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 K+ L L D L R+ A+L L + LR +E L + + + L + Sbjct: 133 FKKVLALCDLTTLKGK--------RDRALLMLFWSNALRRNEVSLLDIGDFVPSRRILWV 184 Query: 191 QGKG-DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI----RGKPLNPGVFQR 245 +GKG + V L P KAI ++ + PLF + RG L+ + Sbjct: 185 KGKGRSEKESVDLSPKTIKAICDWL-AERGSAGIKSSSPLFIALDSRSRGSRLSGDGLYK 243 Query: 246 YIRQLRRYLGLPLSTTAHTLRHS-FATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 IR + G+ + H +RHS T L + GD+R +Q + H L+T IY + Sbjct: 244 IIRCYCKDAGIDKLMSPHRIRHSSITTALDKSDGDVRKVQKLSRHKNLNTLMIYDD 299 >gi|150390297|ref|YP_001320346.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF] gi|149950159|gb|ABR48687.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF] Length = 372 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 82/313 (26%), Positives = 137/313 (43%), Gaps = 42/313 (13%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTE-------EKITIQTIRQLSYTEI------ 71 L ++ G++ T +Y D F +L +TE I I+T +Q++ +I Sbjct: 46 LYLKNGVALTTRLAYSEDVLFFCKYLVSHTELTDADHTTLIKIETFQQMTAKDINRYLGD 105 Query: 72 ---RAFISKRRTQKI---GDRSLKRSLSGIKSFLKYLKKRKITTE--SNILN-MRNLKKS 122 R I K + KI +R+L R S + K+L + + + S+ LN +R K Sbjct: 106 FCSRYSIEKEESIKIMENHNRALARKKSSLAVLFKFLYRDGLIKQNISDGLNPIRLPKPQ 165 Query: 123 NSLPRALNEKQALTLVDNVLLHTS----HETKW--IDARNSAILYLLYGCGLRISEALSL 176 + L + ++D V L + +T W R+ AIL L GLR+SE L Sbjct: 166 PDAIKRLEIDEVARMIDCVDLGEAFTEKEKTYWQKTKLRDKAILMLFLTYGLRLSELEQL 225 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQL--PLFRGI 233 + ++ +I K K +P+ + I EY + P L+ + LF + Sbjct: 226 NISSFNFNRGEFKIYRKRGKETAMPINRTCETVIKEYMANERPQSSALDEEHKDALFLSL 285 Query: 234 RGKPLNPGVFQRYIRQL-RRYLGLPLSTTA------HTLRHSFATHLLSNGGDLRSIQSI 286 + K + R IR + ++Y L L TTA H LR + AT L+ G + +Q++ Sbjct: 286 QRKRMTT----RAIRNMVKKYTALVLDTTAKNGYSPHKLRATAATSLIQQGFSIYDVQNL 341 Query: 287 LGHFRLSTTQIYT 299 L H ++TTQ+Y Sbjct: 342 LDHDDVTTTQLYA 354 >gi|317474386|ref|ZP_07933660.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|316909067|gb|EFV30747.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 486 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 39/170 (22%), Positives = 70/170 (41%), Gaps = 31/170 (18%) Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI---RIVPLLPSVRKAILEY 213 + L+ Y G+R + + L NI+DD R++ + DK + + L+PS + I +Y Sbjct: 272 NCFLFAFYCGGMRAGDLIQLRGNNIIDDNGIWRVRYRMDKTSTPKSIKLIPSAKAIIEKY 331 Query: 214 YDL---------------CPF----------DLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 +L P+ L I+ L + + GK + +Y+ Sbjct: 332 INLNQRNSNYIFPLLDNEAPYAKATTWEEKEQLPYEIKTRLLQTVNGKN---SLLNKYLN 388 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 +L G+ + H RHSFA ++ I ++LGH + T+ Y Sbjct: 389 KLAAMAGIEKKISMHIARHSFANIAREKEANVYDISNVLGHSNIDITKGY 438 >gi|281491739|ref|YP_003353719.1| site-specific tyrosine recombinase Xers [Lactococcus lactis subsp. lactis KF147] gi|281375453|gb|ADA64963.1| Site-specific tyrosine recombinase XerS [Lactococcus lactis subsp. lactis KF147] Length = 351 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 78/323 (24%), Positives = 131/323 (40%), Gaps = 51/323 (15%) Query: 31 LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRR---TQ 81 LS+ ++ Y D R++L +L ++IT+Q + ++ E+ F+ R Sbjct: 34 LSEASIYEYCLDFRKYLQWLLDGSITNHNQIKEITLQELENVTKHELEDFVLHERLRLES 93 Query: 82 KIGDRS----LKRSLSGIKSFLKYLKKRKITTESNILNMRNL-------KKSNSLP-RAL 129 K G + L R+++ IKS YL ++ N RN+ KKS +L RA Sbjct: 94 KCGSNAHTSALNRTIAAIKSLYNYLSEQTEDEHGNTYMTRNVSRLIHIRKKSETLHYRAA 153 Query: 130 NEKQALTLVDNV------LLHTSHETKWIDARNS---------AILYLLYGCGLRISEAL 174 + L L D + H + AR S AIL L GLR +E + Sbjct: 154 QLEGKLFLGDETKDFLEFVEHNYENSVSNRARTSFKKNKIRDLAILSLFLSSGLRCAELV 213 Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF---- 230 + ++ + + + K K +VP+ K I +Y+ + ++ IQ Sbjct: 214 GINLDDLNLEAGKVSVMRKEGKKDVVPIAQFSHKYINDYF-VIRSSIDTEIQAFFITDYD 272 Query: 231 ---RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 R I +N V +Y + + T HTLRH+FAT L + + + L Sbjct: 273 QKIRKISNASINKLV-AKYSEAYK------VRVTPHTLRHTFATRLYNVSHSQVLVSNQL 325 Query: 288 GHFRLSTTQIYTNVNSKNGGDWM 310 GH T++YT++ S D + Sbjct: 326 GHSSTKPTELYTHIVSAEAKDAL 348 >gi|126661716|ref|ZP_01732715.1| tyrosine type site-specific recombinase [Flavobacteria bacterium BAL38] gi|126625095|gb|EAZ95784.1| tyrosine type site-specific recombinase [Flavobacteria bacterium BAL38] Length = 408 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 21/153 (13%) Query: 162 LLYGC--GLRISEALSLTPQNIMDD-QSTLRIQGKGDKIRI---VPLLPSVRKAILEYYD 215 L+ C G +A+ LT +NI+ D + TL I+ K VP+LP V K I +Y Sbjct: 256 FLFSCYTGYAPVDAIKLTRKNIIQDTEKTLWIKANRQKTNTKANVPILPPVLKIINKY-- 313 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274 + LP I + +N Y++++ +GL T + RH+FAT + L Sbjct: 314 ----QFYGDTLLP---KISNQKMNA-----YLKEIADIIGLEKKLTWYVARHTFATTVTL 361 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 NG + ++ ++LGH + TQ Y + +N G Sbjct: 362 GNGIRIENVSAMLGHTTIKQTQHYAKILDQNVG 394 >gi|256393898|ref|YP_003115462.1| integrase family protein [Catenulispora acidiphila DSM 44928] gi|256360124|gb|ACU73621.1| integrase family protein [Catenulispora acidiphila DSM 44928] Length = 354 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 58/269 (21%), Positives = 107/269 (39%), Gaps = 13/269 (4%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T +Y D +Q+ + A + + +R T + R + +L R +S Sbjct: 72 TASAYAVDLKQWFAWCALFDVDPF--DAVRAHVDTWAVHLADEGRARPA---TLARKISA 126 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 +++F Y T+ S + +++ K+ LPR + Q L Sbjct: 127 VRNFYAYAVDSGYTSSSPV-PIKD--KALHLPRVSRKSQTLGPDREESAAMLEAAAQRGV 183 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVPLLPSVRKAILE 212 R+ A++ +L GLR+SE + +++ + +R++ KG + + + P + Sbjct: 184 RDEAVVAVLLYQGLRVSELCGINVEDLSSQRGHRVVRLRRKGGEEQDQAIAPPAAGCLDA 243 Query: 213 YYDLCPFDLNLNI---QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 + D P+F G G L + + R G+ + H+LRH+ Sbjct: 244 WLAERARDSAFGAVPASGPVFVGPEGARLTRYQVEWIVESCARAAGVEKKISPHSLRHAC 303 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 T LL G LR IQ +GH +TT+ Y Sbjct: 304 TTMLLDAGVPLRDIQVYMGHANSATTERY 332 >gi|228988991|ref|ZP_04149022.1| Integrase-recombinase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228770753|gb|EEM19287.1| Integrase-recombinase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 390 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 67/153 (43%), Gaps = 10/153 (6%) Query: 156 NSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 N IL L G RI E + +++ D + L++ GKG+K+R + + + + I E Sbjct: 218 NYTILLALASTGARIQELCTTRVKDLHYDGKHWLKVTGKGNKVRELFISEHLYQCICEMR 277 Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266 L+ + PLF RG N + + + + L TAHT R Sbjct: 278 QRRGLKTILDRGDESPLFINQRGNFYNSKMLSNQVTDMIKKTDLEFLQFRENPVTAHTFR 337 Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298 H+FA + G DL + LGH + TT+IY Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370 >gi|313674555|ref|YP_004052551.1| integrase family protein [Marivirga tractuosa DSM 4126] gi|312941253|gb|ADR20443.1| integrase family protein [Marivirga tractuosa DSM 4126] Length = 417 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 86/336 (25%), Positives = 143/336 (42%), Gaps = 62/336 (18%) Query: 8 EIVSFELLKERQNWLQNLEIERGLSKL-----------------TLQSYECDTRQFLIFL 50 E++S E+++ N L NLE E+ ++ L TLQ Y+ R F FL Sbjct: 91 ELISAEIIR---NKLFNLEEEQQITLLSASKYHYDQNIHNFSTGTLQHYKVTERYFERFL 147 Query: 51 AFYTEEKITIQTIRQLSY-------TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK 103 + T++ ++ I ++ Y +RA+ K + IG + + + + L Y Sbjct: 148 S--TKKNLSDIAIEKVDYKFLLDFEAFLRAWKPKDHQKPIGHNGIMKHMCRFRKVLNYAY 205 Query: 104 KRKITTESNILNMR-NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID-ARNSAIL- 160 K T++ + +KS + E A+ E K +D AR I Sbjct: 206 KMDWITDTPFKKYHISYEKSTRTYLTVEELSAI------------EVKELDIARLEQIRD 253 Query: 161 YLLYGC--GLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRI---VPLLPSVRKAILEYY 214 ++ C GL + +L+ +I+ + + IQ K K VPLLP + I +Y Sbjct: 254 IFIFSCYTGLSYIDLFNLSKDHIVIGINGEKWIQYKRQKTSTPFSVPLLPKALELIEKYE 313 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL- 273 D N L + + N Y++++ G+ T H RH+FAT + Sbjct: 314 DHPKAKEN-----QLLPVVSNQKTNA-----YLKEIADLCGIKKQLTFHIARHTFATTVT 363 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTN-VNSKNGGD 308 L+NG + ++ +LGH +LSTTQIY V +K G D Sbjct: 364 LTNGVPMETVSKMLGHTKLSTTQIYAKVVENKIGTD 399 >gi|294778653|ref|ZP_06744075.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] gi|294447602|gb|EFG16180.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] Length = 430 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 69/159 (43%), Gaps = 35/159 (22%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------GDKIRIVPL---LP 204 A L+ Y GLR S+ LTP+N +RI GK G +IR+ PL Sbjct: 260 AFLFCCY-TGLRYSDFCQLTPENF------IRINGKRWLYFKSVKTGVEIRL-PLHLLFE 311 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 S IL+ Y P P N V + +R+L G+ T H Sbjct: 312 SRALGILDRY-------------PDIGSFAALPCNSEV-NKQLRKLAELCGIKKRITYHV 357 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 RH+ AT L+ G + ++Q +LGH + TTQIY+ V S Sbjct: 358 SRHTCATLLVHQGVAITTVQKLLGHTSVKTTQIYSEVLS 396 >gi|332653262|ref|ZP_08419007.1| phage integrase [Ruminococcaceae bacterium D16] gi|332518408|gb|EGJ48011.1| phage integrase [Ruminococcaceae bacterium D16] Length = 410 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 2/69 (2%) Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-T 294 +P+NP ++++L + GLP S H LRH+FATH L++G D +++ ILGH + S T Sbjct: 323 QPVNPNAAYDHLKKLLQQAGLP-SIRFHDLRHTFATHALASGVDAKTLSGILGHTQASFT 381 Query: 295 TQIYTNVNS 303 YT+V Sbjct: 382 LDTYTHVTG 390 >gi|299821501|ref|ZP_07053389.1| integrase/recombinase [Listeria grayi DSM 20601] gi|299817166|gb|EFI84402.1| integrase/recombinase [Listeria grayi DSM 20601] Length = 314 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 49/218 (22%), Positives = 92/218 (42%), Gaps = 15/218 (6%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S+ + K+F YL +K + + + L++ + + L + + + + Sbjct: 90 SINSKIKAFKAFYNYLFSKKYIKVNPVADFSLLRQREEIRKTLEANE----IKKIANYYK 145 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 + + R+ + LL GLRISEA+++ +I DD + ++ K RIV + S+ Sbjct: 146 RKETFTAFRDLVLFQLLLDTGLRISEAINIKVPDIHDDYIVV-VETKNLTQRIVYISKSM 204 Query: 207 RKAILEYYDL---CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 ++ + Y + C IQ G FQ +R R L + H Sbjct: 205 KQKLNSYISIRGECNHQYLFIIQ-------DGTKYTKYSFQESLRNAGRMCQLRKQVSPH 257 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 R ++A + + +G D S+ S+LGH L T+ Y + Sbjct: 258 VCRRTYAKNAILSGMDAFSLASLLGHSSLEVTKRYVQI 295 >gi|332661998|ref|YP_004451467.1| integrase family protein [Haliscomenobacter hydrossis DSM 1100] gi|332337495|gb|AEE54594.1| integrase family protein [Haliscomenobacter hydrossis DSM 1100] Length = 501 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 10/153 (6%) Query: 158 AILYLLYGCGLRISEALSLTPQ--NIMDDQST---LRIQGKGDKIRIVPLLPSVRKAILE 212 I+ L+ CGLR++E + L + N M + T L+ + K + R +PL + +A+ + Sbjct: 29 VIILLMLDCGLRVTEVVQLQRKHFNFMQNTVTVASLKKRSKRLRTRSIPLSTRLLEALAD 88 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 Y+ P + + L+ V + I++ + P H LRH+FAT Sbjct: 89 YWPRIKDPEPDTYIFPAAKTSKALYLSRVVVWKRIKKYSGGVVHP-----HMLRHTFATR 143 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 ++ G D+R Q +LGH TT+IY +V + Sbjct: 144 VVREGNDIRVAQKLLGHNSQLTTEIYLHVEDQE 176 >gi|229492025|ref|ZP_04385839.1| phage integrase family protein [Rhodococcus erythropolis SK121] gi|229321049|gb|EEN86856.1| phage integrase family protein [Rhodococcus erythropolis SK121] Length = 246 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 78/165 (47%), Gaps = 21/165 (12%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQ-GKGDKI-----RIVPLLP 204 AR+ A+ LY GLR EA L ++ D+ L ++ GKG ++ R VP+L Sbjct: 63 ARDYALFRTLYHAGLRSEEAALLDLPDVHFDRGPFGKLHVRFGKGARMSGPRPRWVPMLD 122 Query: 205 SVRKAILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 + +L + F ++ + P LF G PL+ G + +R L G P S Sbjct: 123 GL-DLVLRW-----FLTDVRPKFPDSPVLFADESGGPLHRGTIRNRLRYLMELEGRPRSE 176 Query: 261 --TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + H LR + ATH G DL +IQ +LGH+ + +T Y ++ Sbjct: 177 RFSPHALRRACATHNYERGVDLVAIQQLLGHWTVGSTMRYVRPSA 221 >gi|268589662|ref|ZP_06123883.1| site-specific recombinase, phage integrase family [Providencia rettgeri DSM 1131] gi|291314972|gb|EFE55425.1| site-specific recombinase, phage integrase family [Providencia rettgeri DSM 1131] Length = 328 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 19/145 (13%) Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215 N + L G R EA+ L ++++ ++ G K RIVP+ V + Sbjct: 181 NKKVAILCLSTGARWGEAVKLKREHVIQNKIRFTFTKTG-KARIVPISQEVADKVCTRKS 239 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275 F N +FR ++I+ ++ +P H LRH+FATH + Sbjct: 240 GLLFP---NTSYDMFR-------------KHIKTIKP--DMPQGQATHALRHTFATHFMM 281 Query: 276 NGGDLRSIQSILGHFRLSTTQIYTN 300 NGG + ++Q ILGH L T Y + Sbjct: 282 NGGSIITLQRILGHSTLQQTLTYAH 306 >gi|194466381|ref|ZP_03072368.1| integrase family protein [Lactobacillus reuteri 100-23] gi|194453417|gb|EDX42314.1| integrase family protein [Lactobacillus reuteri 100-23] Length = 359 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 6/163 (3%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ AI+ L+ G G+R+SEA ++ ++ QS L + KG + VP+ P I Y Sbjct: 189 RDIAIIALILGTGVRVSEAANVNLGDLNLKQSLLDVTRKGGQRDSVPIAPWAITYIQTYQ 248 Query: 215 DLCPFDLN-LNIQLPLFRGIRGKP---LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 + + L F + K + ++ +++ G PL T H LRH+ A Sbjct: 249 AIRAQRYHALKRDTAFFLTVYHKQTRRMTANAIEKMVKKYSTAFGHPL--TPHKLRHTLA 306 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 + + D + LG S T +YT+V+ K D + EI Sbjct: 307 SEMYEVTKDQVLVAQQLGQKGTSATDLYTHVDQKQQRDALKEI 349 >gi|55980996|ref|YP_144293.1| DNA integration/recombination/invertion protein [Thermus thermophilus HB8] gi|55772409|dbj|BAD70850.1| DNA integration/recombination/invertion protein [Thermus thermophilus HB8] Length = 391 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 59/280 (21%), Positives = 118/280 (42%), Gaps = 35/280 (12%) Query: 63 IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKK 121 ++++ +RA + + R++ R L +K+ + + ++ + +R L K Sbjct: 120 LQEVKPVHVRAAVDRVAEAGYAPRTVGRVLMRLKALFREALRLELVARNPAEAVRLRLPK 179 Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 RAL ++ L++ S + + +L L+ GLR EAL+L ++I Sbjct: 180 GEKTARALEPQEVARLLETAEASRSKDM-------ALLLRLMLETGLRRGEALALQWRDI 232 Query: 182 MDDQSTLRI-----QGKGDKIRIVPLLPSVRKAILEYYD---------------LCPFDL 221 + L + + +G P P+ ++ + L P ++ Sbjct: 233 DLEAGELTVWRSWTKARGKGAFSEPKTPTAKRKVPLPRGLLLRLKARREELLERLTPEEV 292 Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281 + L L G+ KP++P F Y+R+L GL H LRH++AT LS G L Sbjct: 293 D---GLFLVGGV--KPVDPDAFNHYLRRLAERAGLG-RVRVHDLRHTWATLALSRGVPLE 346 Query: 282 SIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQTHPS 320 + LGH + T +Y ++ + W++++ + +P+ Sbjct: 347 VVSERLGHASPTITLNVYRHLLEEERRGWVLDLEELLYPA 386 >gi|317505585|ref|ZP_07963495.1| integrase [Prevotella salivae DSM 15606] gi|315663297|gb|EFV03054.1| integrase [Prevotella salivae DSM 15606] Length = 429 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 14/159 (8%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP--LLPSVRKAILEYYDLC 217 ++ C GL + +L P+NI+ I K K + LL + K+I+ Y Sbjct: 268 FVFSCFTGLAYIDVYNLAPENIVTLNGKQWIMTKRQKTSVETNVLLLDIPKSIIAKYSGK 327 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 + LF + + LN Y++++ G+ + T H RH+FAT LS G Sbjct: 328 TYR-----DGKLFPMLTNQKLNS-----YLKEIADICGIKKNLTFHLARHTFATMSLSKG 377 Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + S+ +LGH + TTQIY + +K M E+ D+ Sbjct: 378 VPIESVSKMLGHTNIKTTQIYARITNKKIEHDMDELADK 416 >gi|315268238|gb|ADT95091.1| integrase family protein [Shewanella baltica OS678] Length = 318 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 23/144 (15%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 I+ + G R SEA +LT ++DD+ I K K R +P+ R Sbjct: 182 IVKICLSTGARWSEAQNLTSSQLLDDRINF-INTKNGKNRTIPITREFRA---------- 230 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNG 277 +LP G L + +++ L+ + LP +H LRH+FA+H + NG Sbjct: 231 -------ELPNGNG----RLFADCYHQFLAVLKSSGIVLPKGQASHVLRHTFASHFVMNG 279 Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301 G++ ++Q ILGH + T Y ++ Sbjct: 280 GNILTLQKILGHGSIQMTMRYAHL 303 >gi|296163766|ref|ZP_06846469.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295885987|gb|EFG65902.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 335 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 76/182 (41%), Gaps = 6/182 (3%) Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 LP AL + L+ T H R+ A+L LL GLR E L +I Sbjct: 147 GLPCALERRDVQRLLAACDRRTHH-----GQRDFAMLMLLARLGLRAGEVRMLKLDDIDW 201 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF 243 L ++GKG +I +PL V +A+ Y D + + + L+ Sbjct: 202 RAGELVVRGKGQRIERLPLPADVGQALASYLRRGRPDTAQGRTVFVRTRAPHRALSSAGV 261 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + GLP +AH LRH+ AT ++ +G L + +L H RL TT IY V+ Sbjct: 262 TEAVAAAASRAGLP-HMSAHRLRHTLATQMVRSGVALPEVAQVLRHRRLMTTSIYAKVDR 320 Query: 304 KN 305 + Sbjct: 321 EG 322 >gi|240171150|ref|ZP_04749809.1| site-specific recombinase [Mycobacterium kansasii ATCC 12478] gi|296165403|ref|ZP_06847944.1| site specific recombinase XerD [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295899294|gb|EFG78759.1| site specific recombinase XerD [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 366 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 75/318 (23%), Positives = 129/318 (40%), Gaps = 42/318 (13%) Query: 17 ERQNWLQNLEIERGLSKL---TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI-- 71 +R +W + +R K TLQ+Y RQ +A Q + +L ++ Sbjct: 20 QRPSWFRAFLTDRATRKPSPHTLQAY----RQDFDAIASAITGADPGQDLSRLDPLDLTK 75 Query: 72 ----RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127 +AF + + + S++R S + YL ++ + + + K + +LPR Sbjct: 76 DALRQAFAAYAGSHEAA--SIRRCWSTWNTLCTYLYTTELLPGNPMQVIGQPKPAKALPR 133 Query: 128 ALNEKQALTLVDNVLLHTSHE--TKWIDARNSAILYLLYGCGLRISE--ALSLTPQNIMD 183 +L + A L+ + +++ T W + R+ AI+ GLR +E ++ + D Sbjct: 134 SLPAEAAEALITAIEAPAANKRATDWPE-RDRAIILTALLAGLRAAELRGANIGDLRLSD 192 Query: 184 DQSTLRIQGKGDKIRIVPLLPSV----------RKAILEYYDLCPFDLNLNIQLP----L 229 LR++GKG K R VP+ ++ R A N Q P L Sbjct: 193 GGGVLRVRGKGGKHRSVPIEQALVDVLNSYLTTRAARFPATTRGRSGQNPRPQWPASAAL 252 Query: 230 FRGIRGKPLNPGVFQRYIRQLRRY-LGLP-----LSTTAHTLRHSFATHLLSNGGDLRSI 283 F G G + G Q R LR + L P H LRH++AT L + ++ Sbjct: 253 FVGRDGARITRGALQ--YRVLRAFNLAGPDAQRTPGAMVHALRHTYATELAGANISVYTL 310 Query: 284 QSILGHFRLSTTQIYTNV 301 +LGH ++T+Q Y Sbjct: 311 MKLLGHESMATSQRYVTA 328 >gi|327395182|dbj|BAK12604.1| phage integrase [Pantoea ananatis AJ13355] Length = 327 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 81/315 (25%), Positives = 136/315 (43%), Gaps = 46/315 (14%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 LL ER WL+ L + G + TL +Y + AF + +I + +R + ++ A Sbjct: 11 LLAER--WLKLLS-DLGRAPATLTAYRA---ALCHYFAFCSRNRIEPEKVR---FDDMAA 61 Query: 74 FISKRRTQKIG------DRSLKRSLSGIK---SFLKYLKKRKIT------TESNILNMRN 118 +I R Q G +L+ LS ++ FL YL K+ T + + R Sbjct: 62 YI---RPQLPGMPFPAASATLQLRLSAVRLWYDFLMYLDLCKVNPLPRSGTPGMLCSARG 118 Query: 119 L-KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 L + LPR ++ Q L +H R+ +L L Y LR SE +L+ Sbjct: 119 LVPRIVKLPRIPDDAQ-------WQLFQAHAAD-SPLRDRLMLALTYCGALRRSEVTALS 170 Query: 178 PQNIMDDQSTLRIQGKGDK---IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI- 233 ++ +R++ + K RIV P++ + + L L+ ++ LFR Sbjct: 171 TDDLDFAHRLIRVRAETTKNRHERIVCYSPALTPVLAAH--LLQMKLSGMVKGALFRSES 228 Query: 234 ---RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290 +G PL+ + + +R+ GLP +T HT RH THL G L + + GH Sbjct: 229 DRNQGAPLSYWSWSKTVRKWALESGLPDIST-HTFRHLRLTHLARAGWKLHELATYAGHR 287 Query: 291 RLSTTQIYTNVNSKN 305 TTQIY +++ ++ Sbjct: 288 DPRTTQIYIHLSGRD 302 >gi|312134834|ref|YP_004002172.1| integrase family protein [Caldicellulosiruptor owensensis OL] gi|311774885|gb|ADQ04372.1| integrase family protein [Caldicellulosiruptor owensensis OL] Length = 400 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 1/68 (1%) Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 G P++P F+R ++R GL S H LRH++AT LL + +Q +LGH +ST Sbjct: 307 GTPIDPRNFERLFYRIREKAGLDKSVNFHALRHTYATRLLEANEHPKVVQELLGHKDIST 366 Query: 295 T-QIYTNV 301 T IY++V Sbjct: 367 TLNIYSHV 374 >gi|307322494|ref|ZP_07601844.1| integrase family protein [Sinorhizobium meliloti AK83] gi|306891863|gb|EFN22699.1| integrase family protein [Sinorhizobium meliloti AK83] Length = 90 Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 24/47 (51%), Positives = 31/47 (65%) Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 GL T H+LRH+FA HLL G D+R+IQ +LGH L+TT Y + Sbjct: 13 GLSEPGTPHSLRHAFAVHLLEAGSDVRTIQLLLGHRSLATTAHYLRI 59 >gi|237805544|ref|ZP_04592248.1| Phage integrase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331026651|gb|EGI06706.1| Phage integrase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 153 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 14/120 (11%) Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG------ 241 L++ GKG K+R +P+ P I +Y + L N ++PLF +RGK G Sbjct: 22 LKVHGKGGKVRYLPMHPVAAGRIHQYLESSGHHL-ANRKVPLFIPLRGKLTGTGITANGI 80 Query: 242 --VFQRYIRQLRRYL-GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 V Y ++ + GL + H LR + AT+ L + D+ +Q LGH +STT+IY Sbjct: 81 YTVVTAYAKKAEIEVDGLGV----HGLRATAATNALEHEADIAKVQLWLGHANISTTKIY 136 >gi|229107361|ref|ZP_04237229.1| Tyrosine recombinase [Bacillus cereus Rock3-28] gi|228676090|gb|EEL31067.1| Tyrosine recombinase [Bacillus cereus Rock3-28] Length = 358 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 69/304 (22%), Positives = 128/304 (42%), Gaps = 42/304 (13%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK---------RRTQKIGD 85 TL +Y D R F +L +E+ I ++ I+ +S++++ K + Q + + Sbjct: 43 TLLNYVYDFRVFFNWLL--SEQIIELKPIKDISFSDLENLKKKDVENFMRFLKLQQNMQN 100 Query: 86 RSLKRSLSGIKSFLKYL------------------KKRKITTESNILNMRNLKKSNSLPR 127 S+ R +S +KS KYL K +I + LN R + + + Sbjct: 101 SSVNRKISALKSLFKYLTSLSENEDGECYFYRNVMAKIEIHKDKETLNARAKRMRSKIFH 160 Query: 128 ALNEKQALTLV--DNVLLHTSHETKWI---DARNSAILYLLYGCGLRISEALSLTPQNIM 182 ++++ L V ++ T H+ + R+ AIL L G G+R+SE +L ++I Sbjct: 161 NDDDQEFLDYVKYEHEKSLTKHQLFYFLRDKNRDVAILSLFLGSGVRVSELAALRMEDIN 220 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKP 237 + + + KG+K V + P + +Y ++ P N+ L ++ +P Sbjct: 221 IKERLIDVIRKGNKEDSVWITPIALNDLEKYMEIRDNKYVPGKELKNVFLSKYKHT-AQP 279 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L+ Q + + + G +S H LRH+ A L D + LGH T + Sbjct: 280 LSVRAIQDIVEKYTKAYGKRMS--PHKLRHTLANKLYMEEKDSLQVMQQLGHTSQDTALL 337 Query: 298 YTNV 301 YT + Sbjct: 338 YTQL 341 >gi|255657789|ref|ZP_05403198.1| tyrosine recombinase XerD [Mitsuokella multacida DSM 20544] gi|260849979|gb|EEX69986.1| tyrosine recombinase XerD [Mitsuokella multacida DSM 20544] Length = 265 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 72/165 (43%), Gaps = 16/165 (9%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL-----LPSVRKA 209 R+ A+ L+ GLR+ E + L +I++ KG + I+PL L S++ Sbjct: 108 RDRAMFALMAYNGLRVGEVVGLDMDDILNGHRLRLRNTKGKRDAIIPLVHPRVLSSLKAY 167 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 I E P LF RG ++ ++IR GL AH+LR F Sbjct: 168 IKERKSESP---------ALFLNHRGVRMSCNGLAQFIRNEFHDNGLAFH--AHSLRRYF 216 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 A L NG ++ IQ + H ++TT Y N++ D + E+Y Sbjct: 217 ANTLSRNGIPVQDIQVAMRHASITTTMGYLNIDEDKTRDILREVY 261 >gi|222529021|ref|YP_002572903.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725] gi|222455868|gb|ACM60130.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725] Length = 400 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 1/68 (1%) Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 G P++P F+R ++R GL S H LRH++AT LL + +Q +LGH +ST Sbjct: 307 GTPIDPRNFERLFYRIREKAGLDKSVNFHALRHTYATRLLEANEHPKVVQELLGHKDIST 366 Query: 295 T-QIYTNV 301 T IY++V Sbjct: 367 TLNIYSHV 374 >gi|304382578|ref|ZP_07365072.1| possible tyrosine type site-specific recombinase [Prevotella marshii DSM 16973] gi|304336203|gb|EFM02445.1| possible tyrosine type site-specific recombinase [Prevotella marshii DSM 16973] Length = 387 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 62/186 (33%), Positives = 85/186 (45%), Gaps = 34/186 (18%) Query: 131 EKQALTL--VDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQS 186 E+ ALT V +L + H + N L L GC GL S+ L MDD Sbjct: 179 ERNALTADDVQKLLAYRPHRS----TENHCRLIFLLGCFTGLAFSDLKKLR----MDDVY 230 Query: 187 TLR--------IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238 TL + K IVPLLP + + IL ++ + LF R P Sbjct: 231 TLSDGRRYISLCRTKTQNRSIVPLLP-IAEEILAI-------VSHGRREGLF--FREFPC 280 Query: 239 NPGVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTT 295 N F R I+++ GLP T T+HT RH+FAT + L NG + ++ +LGH +STT Sbjct: 281 NSN-FNRTIQEISIKAGLPPHTQATSHTARHTFATTICLENGLPIETVSKMLGHRFISTT 339 Query: 296 QIYTNV 301 +IY V Sbjct: 340 EIYARV 345 >gi|167754410|ref|ZP_02426537.1| hypothetical protein ALIPUT_02704 [Alistipes putredinis DSM 17216] gi|167659035|gb|EDS03165.1| hypothetical protein ALIPUT_02704 [Alistipes putredinis DSM 17216] Length = 379 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 70/164 (42%), Gaps = 28/164 (17%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219 L+ C GLR S+ + LT ++ +G+ RI+ + + EY D+ P Sbjct: 232 FLFSCLTGLRRSDVIRLTWGDV---------HQQGEFTRII--FKQKKTSGQEYLDIPP- 279 Query: 220 DLNLNIQLPLFRGIRGKPL--------NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 Q G RGK +P I++ G+ T H RH+FA Sbjct: 280 ------QAAELMGERGKDAEHIFPNIHSPSCTNETIKRWVLRAGIHKDITFHCGRHTFAV 333 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 +L G D+ ++ +LGH LSTTQIY V KN + +I D Sbjct: 334 MMLDLGTDIYTVSKLLGHRELSTTQIYAKVLDKNKQAAVAKIPD 377 >gi|293433077|ref|ZP_06661505.1| integrase bacteriophage origin [Escherichia coli B088] gi|291323896|gb|EFE63318.1| integrase bacteriophage origin [Escherichia coli B088] Length = 346 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 24/144 (16%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 ++ + G R +EA +L I + T ++ KG + R +PL Sbjct: 201 VVKICLATGARWNEAATLKSSQITGGKVTF-VKTKGKRNRTIPL---------------- 243 Query: 219 FDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSN 276 D L +LP +G + KP + + L R + LP H LRH+FA+H + N Sbjct: 244 -DDELLSELPETKGALFPKP----CYNAFRSALERAGIELPSGQLTHVLRHTFASHFMMN 298 Query: 277 GGDLRSIQSILGHFRLSTTQIYTN 300 GG++ +Q ILGH ++ T Y + Sbjct: 299 GGNILVLQKILGHADITMTMRYAH 322 >gi|194430310|ref|ZP_03062803.1| resolvase [Escherichia coli B171] gi|194411640|gb|EDX27969.1| resolvase [Escherichia coli B171] Length = 253 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 40/182 (21%) Query: 153 DARNSAILYLLYGCGLRISEALSLT-------PQNIMDDQSTL--------RIQGK---G 194 D R +L L+ G RI+EAL+LT P +TL R G+ G Sbjct: 50 DLRRKMLLATLWNTGARINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAGRTPAG 109 Query: 195 DKI-RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLR 251 + R+VPL S + L+ + +++PL R + G+ +++ R +R Sbjct: 110 QQTHRLVPLSDSWYVSQLQ-------TMVATLKIPLERRNKRTGRTEKARIWEVTDRTVR 162 Query: 252 RYLG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 ++G + T HT RHS+A H+L G L+ +QS++GH +S+T++YT Sbjct: 163 TWIGEAVAAAATDGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYT 222 Query: 300 NV 301 V Sbjct: 223 KV 224 >gi|160894142|ref|ZP_02074920.1| hypothetical protein CLOL250_01696 [Clostridium sp. L2-50] gi|160894145|ref|ZP_02074923.1| hypothetical protein CLOL250_01699 [Clostridium sp. L2-50] gi|156864175|gb|EDO57606.1| hypothetical protein CLOL250_01696 [Clostridium sp. L2-50] gi|156864178|gb|EDO57609.1| hypothetical protein CLOL250_01699 [Clostridium sp. L2-50] Length = 351 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 57/251 (22%), Positives = 111/251 (44%), Gaps = 25/251 (9%) Query: 61 QTIRQLSYTEIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116 + ++ + +IR +++ K+++ K+ +++R LS SF +L+ +S + + Sbjct: 110 KDVKHIVTDDIRGYLTEYQEKKKSSKVTIDNIRRILS---SFFSWLEDEDYILKSPVRRI 166 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 +K ++ +++ + DN + R+ AI+ +L G+R+ E + L Sbjct: 167 HRVKTGTNIKETYSDEALELMRDNC----------TELRDLAIIDMLASTGMRVGEMVLL 216 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG- 235 +I ++ + GKG K R+V + K L+ Y D N LF ++ Sbjct: 217 NRDDIDFNERECVVFGKGSKERVV-YFDARTKIHLQNYLESRRDNN----PALFVSLKSP 271 Query: 236 -KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 K L G + +R+ + LGL H R + AT + G + +Q +LGH ++ T Sbjct: 272 HKRLKIGGVEVRLREFGKQLGLN-KVHPHKFRRTLATMAIDKGMPIEQLQQLLGHRKIDT 330 Query: 295 TQIYTNVNSKN 305 T Y V N Sbjct: 331 TLQYAMVKQSN 341 >gi|323692724|ref|ZP_08106953.1| phage integrase family Site-specific recombinase [Clostridium symbiosum WAL-14673] gi|323503278|gb|EGB19111.1| phage integrase family Site-specific recombinase [Clostridium symbiosum WAL-14673] Length = 289 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 78/300 (26%), Positives = 123/300 (41%), Gaps = 36/300 (12%) Query: 2 EGNNLP-EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 +G N P EI S + E QN+L E R T+ Y D + F FL K + Sbjct: 3 QGQNKPDEIFSCTRIAEFQNYLHQEERSRN----TITKYIRDLKVFFTFLDGQPMAKEAL 58 Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 + K TQ S+ L+ + FL +L E L ++ LK Sbjct: 59 LDWK------------KHLTQTHAPASVNSMLASVNKFLDWL-------ELPGLKVKPLK 99 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 + N K+ LT + L + E + + R S +L + G+R+SE +T ++ Sbjct: 100 IQRQI--FSNPKKELTTEEYRRLIKAAENRQ-NNRLSLLLQTICSTGIRVSELKFITAES 156 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240 ++ +GK RI+ L P + +A+ Y D + +F G PL+ Sbjct: 157 AKTGRAEADCKGK---TRIIFLPPDLCRALRHYCRERGIDAGI-----IFCTRNGCPLDR 208 Query: 241 GVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 + ++ L G+ P H LRH FA + DL + +LGH +STT+IYT Sbjct: 209 SNIWKDMKMLCDSAGVEPGKVFPHNLRHLFARTYYALEKDLSRLADLLGHSNVSTTRIYT 268 >gi|254250671|ref|ZP_04943990.1| Phage integrase [Burkholderia cenocepacia PC184] gi|124879805|gb|EAY67161.1| Phage integrase [Burkholderia cenocepacia PC184] Length = 578 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 75/319 (23%), Positives = 129/319 (40%), Gaps = 65/319 (20%) Query: 27 IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 +ERG LS LT + D + F+ T + + +R + R F + + Sbjct: 258 VERGRALSSLTTE----DALAYRAFIRRPTPHERWVGPVRPRGAPDWRPF-----SGALS 308 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNSL--PRALNEKQAL---TL 137 RS +LS + + ++L +++ + + +R+ + + +L A E + L T+ Sbjct: 309 ARSAAYTLSVLGALFRWLIEQRYVLANPFAGVKVRDTRGATALDTSHAFTEGEWLLVRTI 368 Query: 138 VDNV-----LLHTSHETKWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDD---QS 186 D + + + ++ W A + ++L Y GLR SE + T +I D + Sbjct: 369 ADGLEFGKRPVKGAPQSGWTPAAAQRLRFILDFGYATGLRASELVGATLGDIETDAHGDA 428 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP------ 240 L++ GKG K V L P R A+ Y + +LP+ R +P P Sbjct: 429 WLKVIGKGGKAARVALPPLARTALDRYL--------VARRLPVTPA-RWRPDTPLIPRVA 479 Query: 241 -------------GVFQRYIRQLRRYLGLPLSTTAHTLR--------HSFATHLLSNGGD 279 V QR+ Q + AH LR H+ ATH L+ G + Sbjct: 480 EDDAAAITSVRLWKVMQRFFAQTADAVEADHPALAHKLRQASPHWMRHTHATHALARGAE 539 Query: 280 LRSIQSILGHFRLSTTQIY 298 L +++ L H +STT IY Sbjct: 540 LTTVRDNLRHASISTTSIY 558 >gi|228931343|ref|ZP_04094272.1| Tyrosine recombinase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228828346|gb|EEM74052.1| Tyrosine recombinase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 361 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 69/304 (22%), Positives = 127/304 (41%), Gaps = 42/304 (13%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK---------RRTQKIGD 85 TL +Y D R F +L +E+ I ++ I+ +S++++ K + Q + + Sbjct: 43 TLLNYVYDFRVFFNWLL--SEQIIELKPIKDISFSDLENLKKKDVENFMRFLKLQQNMQN 100 Query: 86 RSLKRSLSGIKSFLKYL------------------KKRKITTESNILNMRNLKKSNSLPR 127 S+ R +S +KS KYL K +I + LN R + + + Sbjct: 101 SSVNRKISALKSLFKYLTSLSENEEGECYFYRNVMAKIEIHKDKETLNARAKRMRSKIFH 160 Query: 128 ALNEKQALTLV--DNVLLHTSHETKWI---DARNSAILYLLYGCGLRISEALSLTPQNIM 182 ++++ L V ++ T H+ + R+ AIL L G G+R+SE L ++I Sbjct: 161 NDDDQEFLNYVKYEHEKSLTKHQLFYFLRDKNRDVAILSLFLGSGIRVSELADLRMEDIN 220 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKP 237 + + + KG+K V + P + +Y ++ P N+ L ++ +P Sbjct: 221 LKERLIDVIRKGNKEDSVWITPIALNDLEKYMEIRDNKYAPGKELKNVFLSKYKHT-AQP 279 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L+ Q + + + G +S H LRH+ A L D + LGH T + Sbjct: 280 LSVRAIQDVVEKYTKAYGKRMS--PHKLRHTLANKLYMEEKDSLQVMQQLGHTSQDTALL 337 Query: 298 YTNV 301 YT + Sbjct: 338 YTQL 341 >gi|227326878|ref|ZP_03830902.1| putative integrase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 325 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 23/145 (15%) Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 +++ + G R SEA L ++ + T I KG + R VP+ P E Y L Sbjct: 182 GSVVRICLATGARWSEAQELKQSQLVPYRVTY-INTKGKRNRTVPISP-------ELYQL 233 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR-YLGLPLSTTAHTLRHSFATHLLS 275 P RG+ +P + + + L+R + LP H LRH+FA+H + Sbjct: 234 LPRR-------------RGQLFSP-CYDAFRQALKRSQIDLPEGQLTHVLRHTFASHFMM 279 Query: 276 NGGDLRSIQSILGHFRLSTTQIYTN 300 NGG++ ++ ILGH + T Y + Sbjct: 280 NGGNILVLKDILGHTSIQMTMRYAH 304 >gi|220683971|gb|ACL80793.1| putative transposase [Vibrio tasmaniensis] Length = 506 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 41/73 (56%) Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 G Q+ ++ + + + + H+ RH FATHLL G DLRS+Q++LGH L+TT YT Sbjct: 70 GGIQKTMKLVLKECDIQKHASPHSPRHCFATHLLEQGLDLRSLQTLLGHASLNTTARYTR 129 Query: 301 VNSKNGGDWMMEI 313 + D M I Sbjct: 130 ITQIKQRDAAMAI 142 >gi|301311630|ref|ZP_07217556.1| putative truncated integrase [Bacteroides sp. 20_3] gi|300830371|gb|EFK61015.1| putative truncated integrase [Bacteroides sp. 20_3] Length = 312 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 16/151 (10%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYY 214 A ++ LY CGLR + LT +N+ L+ + KG ++P + +L Sbjct: 160 AFIFCLY-CGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIP-LNDGLLSII 217 Query: 215 DLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 P D N L LP + + +++ + G+ + H RHSFA ++ Sbjct: 218 GEAPADKNCLIFDLPTYESC----------CKSVKRWVKRAGIDKHISWHCARHSFAVNI 267 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 L+NG +++++ S+LGH L T+ YT K Sbjct: 268 LNNGANIKTVASLLGHSGLKHTEKYTRAVDK 298 >gi|294673638|ref|YP_003574254.1| prophage PRU01 site-specific recombinase [Prevotella ruminicola 23] gi|294472192|gb|ADE81581.1| prophage PRU01, site-specific recombinase, phage integrase family [Prevotella ruminicola 23] Length = 381 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 18/113 (15%) Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 P+LP A+LE YD +LP+ I + LN Y+ ++ L + Sbjct: 282 PILPPAL-AVLEKYDF---------KLPI---ISNQKLND-----YLHLIQDTLDIRNEV 323 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 T H RHSFAT +L+ G + ++ +LGH ++TTQIY + KN D + EI Sbjct: 324 TCHIGRHSFATLMLTYGIPIEKVKRMLGHKNIATTQIYAKILKKNVEDSVNEI 376 >gi|283769290|ref|ZP_06342191.1| site-specific recombinase, phage integrase family [Bulleidia extructa W1219] gi|283104100|gb|EFC05482.1| site-specific recombinase, phage integrase family [Bulleidia extructa W1219] Length = 327 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 56/264 (21%), Positives = 108/264 (40%), Gaps = 51/264 (19%) Query: 61 QTIRQLSYTEIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116 + ++ + +IR +++ K+++ K+ +++R LS SF +L+ +S + + Sbjct: 86 KDVKHIVTDDIRGYLTDYQKKKKSSKVTIDNIRRILS---SFFSWLEDEDYILKSPVRRI 142 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 +K ++ +++ + DN + R+ AI+ +L G+R+ E + L Sbjct: 143 HKVKTGTNIKETYSDEALELMRDNC----------TELRDLAIIDMLASTGMRVGEMVLL 192 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 +I ++ + GKG K R+V FD I L + G R Sbjct: 193 NRNDIDFNERECIVFGKGSKERVV-----------------YFDARTKIHLQNYLGSRTD 235 Query: 237 PLNPGVF---------------QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281 NP +F + +R+ + LGL H R + AT + G + Sbjct: 236 D-NPALFVSLKSPHERLKIGGVEVRLREFGKQLGLQ-KVHPHKFRRTLATMAIDKGMPIE 293 Query: 282 SIQSILGHFRLSTTQIYTNVNSKN 305 +Q +LGH ++ TT Y V N Sbjct: 294 QLQQLLGHRKIDTTLQYAMVKQSN 317 >gi|323146177|gb|ADX32415.1| phage integrase family protein [Cronobacter phage ENT90] Length = 345 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 58/228 (25%), Positives = 93/228 (40%), Gaps = 28/228 (12%) Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 F R +++ R+L L+ ++ L + N L R+++ P E + Sbjct: 114 FARSSRVKEVSPRTLNLELAYFRAVFNELGRLGEWKGENPL--RHIR-----PFRTEESE 166 Query: 134 ALTLVDNVLLHTSHETKWIDARN-SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 L + + H E + D + ++ + G R SEA L I + T I+ Sbjct: 167 MAWLTHSQIAHLLAECRNSDQADLETVVKICLATGARWSEAEGLKKSQISKYKITY-IKT 225 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 KG K R VP+ S+ + I E N LF G F+ + R Sbjct: 226 KGRKNRTVPITESIYRIIPE-----------NKTGRLFADCYG------AFRSALE--RT 266 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + LP H LRH+FA+H + NGG+L +Q +LGH + T Y + Sbjct: 267 GIELPAGQLTHVLRHTFASHFMMNGGNLLVLQRVLGHTDIKMTMRYAH 314 >gi|227114983|ref|ZP_03828639.1| phage integrase family protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 328 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 61/226 (26%), Positives = 94/226 (41%), Gaps = 31/226 (13%) Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL-NMRNLKKSNSLPRALNEKQALTL 137 R KI ++ R LS ++ L + +N L ++R K S S L + Q L Sbjct: 117 REAKISPTTVNRELSYFRALFNELARLGEWNAANPLESVRPYKTSESEMAFLQKDQIARL 176 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 LH +K D I+ L G R SEA LT + + T + KG + Sbjct: 177 -----LHECEASKAKDL--LLIVKLCLSTGARWSEAEELTRFQLSPYRVTF-TKTKGKRN 228 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGL 256 R VP+ ++ A LP G L G + + + + R + L Sbjct: 229 RTVPISETLYNA-----------------LPRNNG----RLFSGCYNAFRKAMERADIVL 267 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 P +H LRH+FA+H + NGG++ +Q ILGH + T Y + + Sbjct: 268 PAGQCSHVLRHTFASHFMMNGGNILVLQRILGHTDIKMTMRYAHFS 313 >gi|149926485|ref|ZP_01914746.1| Phage integrase [Limnobacter sp. MED105] gi|149824848|gb|EDM84062.1| Phage integrase [Limnobacter sp. MED105] Length = 393 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 77/187 (41%), Gaps = 42/187 (22%) Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM-----------DDQSTLRIQGKGD 195 H +W+ L Y GLRISE Q M +D LR+ GKG+ Sbjct: 199 HRLRWL-------FSLFYLGGLRISE----VSQGCMGDFYFRRAPDGNDLWWLRVVGKGN 247 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFD--LNLNIQLPLFRGIRGKPLNPG----------VF 243 K R +P+ +L Y ++ Q+PLF R + G +F Sbjct: 248 KERQIPISGEFLDELLLYRSYVQVSGLPSVGEQVPLFGSARNFRIRVGRSSIHGTVTDLF 307 Query: 244 QRYIRQLR--------RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 +LR R S +AH LRH+ +H+ ++G DLR I+ LGH +STT Sbjct: 308 ADVAAKLRMQGDMHAVRRASQLESASAHWLRHTAGSHMANSGVDLRVIRDNLGHASISTT 367 Query: 296 QIYTNVN 302 IY + + Sbjct: 368 SIYLHTD 374 >gi|255011581|ref|ZP_05283707.1| putative integrase [Bacteroides fragilis 3_1_12] gi|313149409|ref|ZP_07811602.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313138176|gb|EFR55536.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 407 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 16/151 (10%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYY 214 A ++ LY CGLR + LT +N+ L+ + KG ++P + +L Sbjct: 255 AFIFCLY-CGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIP-LNDGLLSII 312 Query: 215 DLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 P D N L LP + + +++ + G+ + H RHSFA ++ Sbjct: 313 GEAPADKNCLIFDLPTYESC----------CKSVKRWVKRAGIDKHISWHCARHSFAVNI 362 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 L+NG +++++ S+LGH L T+ YT K Sbjct: 363 LNNGANIKTVASLLGHNGLKHTEKYTRAVDK 393 >gi|218695473|ref|YP_002403140.1| Integrase [Escherichia coli 55989] gi|218352205|emb|CAU97951.1| Integrase [Escherichia coli 55989] Length = 333 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 21/134 (15%) Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226 G R SEA L ++ + T ++ KG K R VP+ P L Sbjct: 202 GARWSEAEGLKQSQVLPGRITF-VKTKGKKNRTVPISP-----------------QLQAI 243 Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286 LP RG P F I+ R + LP H LRH+FA+H + GG++ +Q I Sbjct: 244 LPKKRGALFSPCYE-AFDAAIK--RAKIELPDGQLTHVLRHTFASHFMMRGGNILVLQKI 300 Query: 287 LGHFRLSTTQIYTN 300 LGH + T Y + Sbjct: 301 LGHSDIKMTMRYAH 314 >gi|330831608|ref|YP_004394560.1| integrase domain-containing protein [Aeromonas veronii B565] gi|328806744|gb|AEB51943.1| Integrase domain protein SAM domain protein [Aeromonas veronii B565] Length = 409 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 89/207 (42%), Gaps = 54/207 (26%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMD--DQ-------STLRIQGKGDKIRIVPLLPS 205 RN A++ L GLRISEAL+L + D DQ +TL++ GKG K R V + Sbjct: 197 RNLALIDTLIVSGLRISEALNLDVHQLPDPDDQCYAGLKSTTLKVVGKGKKSRDVRIPKR 256 Query: 206 VRKAILEYYDLCPFDL-------NLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRY 253 + +AI Y D ++ + + P +F G+PL+ + + + Sbjct: 257 IVRAIRFYCDEERAEILTRAKSDHTRKKSPKQSSKIFLARTGRPLSSRTVESFFAAISNR 316 Query: 254 LGLPLSTTAHTLRHSFATHLLS---------------NGGD---------LRSIQSILGH 289 G+ L T H RH+FA + L NG D LR +Q +LGH Sbjct: 317 AGIRL--TPHGCRHTFAIYQLDAMIKRMAQNLRELRENGSDAYRQILNDPLRELQKLLGH 374 Query: 290 FRLSTTQIYTN-------VNSKNGGDW 309 +STT IY + + ++ GDW Sbjct: 375 SHISTTYIYLDFLEDSEALVDESLGDW 401 >gi|255009706|ref|ZP_05281832.1| tyrosine type site-specific recombinase [Bacteroides fragilis 3_1_12] Length = 406 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 22/147 (14%) Query: 167 GLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYD---LCPF 219 GL S+ L+P++++ D++ L I+ K +I +P+LP V +ILE Y C Sbjct: 257 GLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLP-VAVSILEKYKNVAECTG 315 Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGG 278 L LP+ R Y++++ G+ + + HT RHS+AT + L+NG Sbjct: 316 KL-----LPVLSNQR--------MNSYLKEIADVCGIHKNLSTHTARHSYATSICLANGV 362 Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKN 305 + ++ +LGH S T+ Y V +N Sbjct: 363 SMENVAKMLGHADTSITKHYARVLDQN 389 >gi|228918520|ref|ZP_04081963.1| Tyrosine recombinase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228949462|ref|ZP_04111716.1| Tyrosine recombinase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810185|gb|EEM56552.1| Tyrosine recombinase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228841136|gb|EEM86335.1| Tyrosine recombinase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 358 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 69/304 (22%), Positives = 127/304 (41%), Gaps = 42/304 (13%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK---------RRTQKIGD 85 TL +Y D R F +L +E+ I ++ I+ +S++++ K + Q + + Sbjct: 43 TLLNYVYDFRVFFNWLL--SEQIIELKPIKDISFSDLENLKKKDVENFMRFLKLQQNMQN 100 Query: 86 RSLKRSLSGIKSFLKYL------------------KKRKITTESNILNMRNLKKSNSLPR 127 S+ R +S +KS KYL K +I + LN R + + + Sbjct: 101 SSVNRKISALKSLFKYLTSLSENDEGECYFYRNVMAKIEIHKDKETLNARAKRMRSKIFH 160 Query: 128 ALNEKQALTLV--DNVLLHTSHETKWI---DARNSAILYLLYGCGLRISEALSLTPQNIM 182 ++++ L V ++ T H+ + R+ AIL L G G+R+SE L ++I Sbjct: 161 NDDDQEFLNYVKYEHEKSLTKHQLFYFLRDKDRDVAILSLFLGSGIRVSELADLRMEDIN 220 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKP 237 + + + KG+K V + P + +Y ++ P N+ L ++ +P Sbjct: 221 LKERLIDVIRKGNKEDSVWITPIALNDLEKYMEIRDNKYAPGKELKNVFLSKYKHT-AQP 279 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L+ Q + + + G +S H LRH+ A L D + LGH T + Sbjct: 280 LSVRAIQDIVEKYTKAYGKRMS--PHKLRHTLANKLYMEEKDSLQVMQQLGHTSQDTALL 337 Query: 298 YTNV 301 YT + Sbjct: 338 YTQL 341 >gi|134101614|ref|YP_001107275.1| phage integrase family site specific recombinase [Saccharopolyspora erythraea NRRL 2338] gi|133914237|emb|CAM04350.1| site-specific recombinase, phage integrase family [Saccharopolyspora erythraea NRRL 2338] Length = 312 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 5/149 (3%) Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 +L T + + D R+ AI+ L YG G R++E +LT ++ ++ QGKG K R V Sbjct: 135 ILDTCNGKTFTDLRDQAIIRLYYGTGARLAEVANLTTDDLDMATDSVVYQGKGGKSRRVR 194 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLS 259 P +A+ Y L + +P L+ RG +PL + +++ ++ G+ Sbjct: 195 FGPKTARALSRY--LRARSRHRAADVPSLWLAARGAQPLQANGIKIMLKRRGKHAGVS-G 251 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILG 288 AH RH++A GGD + +LG Sbjct: 252 VHAHRWRHNYAHAWKLAGGDTGDLMLLLG 280 >gi|520404|gb|AAA64588.1| site-specific recombinase [Bacillus thuringiensis serovar morrisoni] Length = 306 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 66/297 (22%), Positives = 129/297 (43%), Gaps = 29/297 (9%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY---TEEKITIQTIRQLSYTEIRAFIS 76 +++ +L E L TL+ Y D + F+ + E I + T R Sbjct: 17 DFISSLSQEGDLHTKTLKEYTSDLKDFVFWFENVWGKHAEDTLFHPIEVTARTIARYRGH 76 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + T+ + ++ R ++ IK + + K++ + + +++ + + P+ +++K+ Sbjct: 77 MQVTRLLKPSTINRRINSIKRYFDWAKQKGLVQTNYSKSIKFVPTEKTSPKRMSDKEEAA 136 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGK 193 L+ V K+ R+ A++ + GLR E + ++++ + + GK Sbjct: 137 LMHAV-------EKYGTLRDRAMIIFMLHTGLRSMEVCDVQIEDVIMRKRGGYVVVRSGK 189 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNP----GVFQRYIR 248 +K R VPL + R A+ E+ L Q LF + GK L + Q+YIR Sbjct: 190 RNKQREVPLNSTARCALEEHIRLSEIS-----QSYLFPSSKTGKRLQERAIRHILQKYIR 244 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 L + G +AH LRH F ++++ L + I+GH L+TT IY ++ Sbjct: 245 -LAKLEGF----SAHDLRHRFG-YVMAERTPLHRLAQIMGHDNLNTTMIYVRATQED 295 >gi|315607201|ref|ZP_07882205.1| integrase [Prevotella buccae ATCC 33574] gi|315251255|gb|EFU31240.1| integrase [Prevotella buccae ATCC 33574] Length = 407 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 21/169 (12%) Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIR 198 L+ ++ + + R + IL L CGLR + LT +NI L+ + KG Sbjct: 240 LIQCHYDNENPNVRRAFILCLY--CGLRFCDVKDLTYKNIDYTNHLLKFEQNKTKGHSAN 297 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL---G 255 ++P + +L P DL+ +I N ++ + ++R++ G Sbjct: 298 SGVVIP-LNNGLLSLIGEAPDDLDSSI------------FNLPSYESCCKSVKRWVKRAG 344 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + + H RHSFA ++L+NG +++++ S+LGH L T+ YT K Sbjct: 345 INKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393 >gi|125624094|ref|YP_001032577.1| site-specific tyrosine recombinase XerS [Lactococcus lactis subsp. cremoris MG1363] gi|229892067|sp|A2RKP9|XERS_LACLM RecName: Full=Tyrosine recombinase xerS gi|124492902|emb|CAL97863.1| tyrosine recombinase [Lactococcus lactis subsp. cremoris MG1363] gi|300070867|gb|ADJ60267.1| site-specific tyrosine recombinase XerS [Lactococcus lactis subsp. cremoris NZ9000] Length = 356 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 62/265 (23%), Positives = 107/265 (40%), Gaps = 46/265 (17%) Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-------KKSNSLP-RALNEKQA 134 + ++ R+LS + S KYL + + RN+ KKS +L RA N K Sbjct: 101 VSQTTINRTLSALSSLYKYLTEEVENEDGEPYFYRNVMKKVQTKKKSETLASRAENIKGK 160 Query: 135 LTLVDNVLLHTSHETKWIDA-------------------RNSAILYLLYGCGLRISEALS 175 L L D T +ID+ R+ AI+ L+ G+R+SEA++ Sbjct: 161 LFLGD----ETQGFLDYIDSEYEKTLSNRARSSFFKNKERDLAIIALILASGIRLSEAVN 216 Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY-------YDLCPFDLNLNIQLP 228 + +++ + + + KG K VP P + Y Y D + Sbjct: 217 VDLRDLNLNTMIVEVTRKGGKRDAVPFAPFAKTYFERYLEVRSQRYKTTAKDTAFFV--T 274 Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288 L+R I + ++P ++ + + + + T H LRH+ AT L + + + LG Sbjct: 275 LYRDIASR-IDPSSVEKLVAKYSQ--AFKVRVTPHKLRHTLATRLYAQTNSQVLVSNQLG 331 Query: 289 HFRLSTTQIYTNV---NSKNGGDWM 310 H T +YT++ KN D + Sbjct: 332 HASTQVTDLYTHIINEEQKNALDSL 356 >gi|254884996|ref|ZP_05257706.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|254837789|gb|EET18098.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] Length = 407 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 16/151 (10%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYY 214 A ++ LY CGLR + LT +N+ L+ + KG ++P + +L Sbjct: 255 AFIFCLY-CGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIP-LNDGLLSII 312 Query: 215 DLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 P D N L LP + + +++ + G+ + H RHSFA ++ Sbjct: 313 GETPADKNCLIFDLPTYESC----------CKSVKRWVKRAGIDKHISWHCARHSFAVNI 362 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 L+NG +++++ S+LGH L T+ YT K Sbjct: 363 LNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393 >gi|254882931|ref|ZP_05255641.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319639734|ref|ZP_07994466.1| integrase [Bacteroides sp. 3_1_40A] gi|254835724|gb|EET16033.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317388650|gb|EFV69497.1| integrase [Bacteroides sp. 3_1_40A] Length = 200 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 20/148 (13%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYY 214 A ++ LY CGLR LT +N+ L+ + KG ++P + +L Sbjct: 48 AFIFCLY-CGLRFCNVKDLTFKNVDYANRLLKFEQSKAKGHSASSGVVIP-LNDGLLSII 105 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL---GLPLSTTAHTLRHSFAT 271 P D N I + ++ + ++R++ G+ + H RHSFA Sbjct: 106 GEVPTDKNCLI------------FDLSTYESCCKSVKRWVKRAGIDKHISWHCARHSFAV 153 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYT 299 ++L+NG +++++ S+LGH L T+ YT Sbjct: 154 NILNNGANIKTVASLLGHSGLKHTEKYT 181 >gi|193805068|gb|ACF22181.1| putative resolvase [Escherichia coli] Length = 260 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 36/180 (20%) Query: 153 DARNSAILYLLYGCGLRISEAL-------SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 D R +L L+ G RI+EAL SLTP +TL+ Q R +P+ Sbjct: 57 DLRRKMLLATLWNTGARINEALALTRGDFSLTPPYPFVQLATLK-QRTEKAARTAGRMPA 115 Query: 206 VRKAILEYYDLCPFD----------LNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRY 253 ++ + L P + +++P+ R + G+ +++ R +R + Sbjct: 116 GQQT----HRLVPLSDTWYVSQLQTMVATLKIPMERRNKRTGRTEKARIWEVTDRTVRTW 171 Query: 254 LG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +G + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 172 IGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|196048003|ref|ZP_03115181.1| integrase-recombinase [Bacillus cereus 03BB108] gi|196021259|gb|EDX59988.1| integrase-recombinase [Bacillus cereus 03BB108] Length = 380 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 62/240 (25%), Positives = 98/240 (40%), Gaps = 19/240 (7%) Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR--NLKKSNSLPRA 128 I++ R Q +L R L+ I SFL +L K + ++++ ++ + R Sbjct: 128 IKSVPKGRNNQPYSVSTLARKLATINSFLIHLYKTEYIQSPLHVHLKKATVRVEDRPNRD 187 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQS 186 L ++ +L+D + K + I+ L GLRI E + ++ +++ Sbjct: 188 LYFEEVQSLLD-------YFKKQNNLFGYMIILFLVTTGLRIEEIANAKIGDLFKAENKI 240 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN--IQLPLFRGIRGKPLNPGVFQ 244 L++ GK K+R V + + + + EY D N PL K NP Sbjct: 241 WLKVIGKRGKLREVYISQQLFECLYEYRKRKGLDTQFNRLDTNPLLVSNHSKKFNPNYLS 300 Query: 245 RYIRQLRRYLGLPL------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 I Q+ GLP T HT RH FA N +L IQ LGH TT+IY Sbjct: 301 NKITQMIFDTGLPFVFEKENPITPHTFRHGFAIIAAENNVELLRIQQTLGHESPMTTKIY 360 >gi|255012270|ref|ZP_05284396.1| putative bacteriophage integrase [Bacteroides sp. 2_1_7] Length = 411 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 16/147 (10%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQS----TLRIQGKGDKIRIVPLLPSVRKAILEYYD 215 ++GC GL + LT ++I+ D+ + + K + +PLL + AI+E Y Sbjct: 253 FIFGCYTGLSFIDIKQLTAEHIVKDREGNFWIRKARQKTKNMCNIPLL-DIPLAIIEKYK 311 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274 P N+ LP+ P N + Y++++ G+ + HT RHS+AT + L Sbjct: 312 DNPKCQKQNVLLPV-------PCNQKM-NSYLKEISDLCGIHKEISTHTARHSYATSVCL 363 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV 301 +NG + ++ +LGH ++ T+ Y V Sbjct: 364 ANGVSIENVAKMLGHSNINMTKRYARV 390 >gi|167762101|ref|ZP_02434228.1| hypothetical protein BACSTE_00451 [Bacteroides stercoris ATCC 43183] gi|167700060|gb|EDS16639.1| hypothetical protein BACSTE_00451 [Bacteroides stercoris ATCC 43183] Length = 406 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 71/144 (49%), Gaps = 16/144 (11%) Query: 167 GLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYDLCPFDLN 222 GL S+ L+P++++ D++ L I+ K +I +P+LP + +Y ++ Sbjct: 257 GLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPMAASILEKYKNVAECTGK 316 Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLR 281 L LP+ R Y++++ G+ + + HT RHS+AT + L+NG + Sbjct: 317 L---LPVLCNQR--------MNSYLKEIADVCGIHKNLSTHTARHSYATSICLANGVSME 365 Query: 282 SIQSILGHFRLSTTQIYTNVNSKN 305 ++ +LGH S T+ Y V +N Sbjct: 366 NVAKMLGHADTSVTKHYARVLDQN 389 >gi|315181692|gb|ADT88605.1| Hypothetical bacteriophage integrase [Vibrio furnissii NCTC 11218] Length = 334 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 58/142 (40%), Gaps = 20/142 (14%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 + L G R EA L + + T + K K R VP+ Sbjct: 183 VAKLCLATGARWGEAEELKGSTVSHCKVTF-LDTKNGKDRTVPI---------------- 225 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278 + +Q + G G+ + Y++ + LP AH LRH+FA+H + NGG Sbjct: 226 ---SQELQDEIVTGKSGRLFKDCYAEFYVQLKQCNFDLPKGQAAHVLRHTFASHFMMNGG 282 Query: 279 DLRSIQSILGHFRLSTTQIYTN 300 ++ ++Q ILGH + T Y + Sbjct: 283 NILTLQKILGHATIQQTMTYAH 304 >gi|195940121|ref|ZP_03085503.1| resolvase [Escherichia coli O157:H7 str. EC4024] Length = 260 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 40/182 (21%) Query: 153 DARNSAILYLLYGCGLRISEALSLT-------PQNIMDDQSTL------------RIQGK 193 D R +L L+ G RI+EAL+LT P +TL R+ Sbjct: 57 DLRRKMLLATLWNTGARINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAGRMPAG 116 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLR 251 R+VPL S + L+ + +++P+ R + G+ +++ R +R Sbjct: 117 QQTHRLVPLSDSWYVSQLQ-------TMVATLKIPMERRNKRTGRTEKARIWEVTDRTVR 169 Query: 252 RYLG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 ++G + T HT RHS+A H+L G L+ +QS++GH +S+T++YT Sbjct: 170 TWIGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYT 229 Query: 300 NV 301 V Sbjct: 230 KV 231 >gi|319760125|ref|YP_004124064.1| integrase family protein [Alicycliphilus denitrificans BC] gi|317119731|gb|ADV02219.1| integrase family protein [Alicycliphilus denitrificans BC] Length = 323 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 4/151 (2%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEY 213 R+ AI+ GLR E L +I T+ ++G K + I+PL +A+ +Y Sbjct: 156 RDYAIVRCALDMGLRAGEIAHLMISDIDWRAGTVMLRGTKSLRQDIMPLPMKTGQALADY 215 Query: 214 YDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 P N I + G R P+ Q+ I+ +GLP S+ AH LRH+ A Sbjct: 216 LQHERPATRNPAIFVRQKEG-RDCPITSMAIQKVIKHACCRVGLPHSS-AHALRHTLACR 273 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 L+ NG L+ + +L H L+TT IY +++ Sbjct: 274 LVENGSSLKEVADLLRHRSLNTTLIYAKLDT 304 >gi|187776297|ref|ZP_02801730.2| resolvase [Escherichia coli O157:H7 str. EC4196] gi|188025300|ref|ZP_02777528.2| resolvase [Escherichia coli O157:H7 str. EC4113] gi|187767942|gb|EDU31786.1| resolvase [Escherichia coli O157:H7 str. EC4196] gi|188013658|gb|EDU51780.1| resolvase [Escherichia coli O157:H7 str. EC4113] Length = 252 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 57/231 (24%), Positives = 97/231 (41%), Gaps = 52/231 (22%) Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL------------L 163 M + + SLP A++ AL L ++H + SA+L+ L Sbjct: 1 MYSAGQPASLPVAIDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVPNLHRKMLLATL 60 Query: 164 YGCGLRISEALSLT-------PQNIMDDQSTL------------RIQGKGDKIRIVPLLP 204 + G RI+EAL+LT P +TL R+ R+VPL Sbjct: 61 WNTGARINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAGRMPAGQQTHRLVPLSD 120 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG------- 255 S + L+ + +++P+ R R G+ +++ R +R ++G Sbjct: 121 SWYVSQLQ-------TMVATLKIPMERRNRRTGRTEKARIWEVTDRTVRTWIGEAVAAAA 173 Query: 256 -----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+ +QS++GH +S+ ++YT V Sbjct: 174 ADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSKEVYTKV 224 >gi|324115878|gb|EGC09806.1| phage integrase [Escherichia coli E1167] Length = 220 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 40/182 (21%) Query: 153 DARNSAILYLLYGCGLRISEALSLT-------PQNIMDDQSTL------------RIQGK 193 D R +L L+ G RI+EAL+LT P +TL R+ Sbjct: 26 DLRRKMLLATLWNTGARINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAGRMPAG 85 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLR 251 R+VPL S + L+ + +++P+ R R G+ +++ R +R Sbjct: 86 QQTHRLVPLSDSWYVSQLQ-------TMVATLKIPMERRNRRTGRTEKARIWEVTDRTVR 138 Query: 252 RYLG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 ++G + T HT RHS+A H L G L+ +QS++GH +S+T++YT Sbjct: 139 TWIGEAVAAAAADGVTFSVPVTPHTFRHSYAMHRLYAGIPLKVLQSLMGHKSISSTEVYT 198 Query: 300 NV 301 V Sbjct: 199 KV 200 >gi|291543316|emb|CBL16425.1| Site-specific recombinase XerD [Ruminococcus sp. 18P13] Length = 310 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 17/179 (9%) Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 P+ LN+ + T+++++ L W + L+ G+R SEAL+LTP++ Sbjct: 115 PKYLNQFELHTMLNHLKLTPQISWDWF-------ILLVAKTGMRFSEALALTPKDFDFPH 167 Query: 186 STLRIQGKGDKIRIVPLLP-----SVRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKP 237 TL I D LP SVRK +++ + F L P+F K Sbjct: 168 QTLSINKTWDYKHGTGFLPTKNRSSVRKIQMDWQTVIQFSGLVKGLPEDKPIFVKESQKV 227 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 N + R + G+P+ + H LRH+ A+ LL G + S+ LGH ++TTQ Sbjct: 228 YNATINDILERHCKA-AGVPV-ISVHGLRHTHASLLLFAGVSIASVARRLGHASMTTTQ 284 >gi|261881024|ref|ZP_06007451.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270332233|gb|EFA43019.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 407 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 21/169 (12%) Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIR 198 L+ ++ + + R + IL L CGLR + LT +NI L+ + KG Sbjct: 240 LIQCHYDNENPNVRRAFILCLY--CGLRFCDVKDLTYKNIDYTNRLLKFEQNKTKGHSAN 297 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL---G 255 ++P + +L P DL+ +I N ++ + ++R++ G Sbjct: 298 SGVVIP-LNDGLLSLIGEAPDDLDSSI------------FNLPSYESCCKSVKRWVKRAG 344 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + + H RHSFA ++L+NG +++++ S+LGH L T+ YT K Sbjct: 345 INKHISWHCARHSFAVNILNNGANIKTVSSLLGHSGLKHTEKYTRAVDK 393 >gi|224539317|ref|ZP_03679856.1| hypothetical protein BACCELL_04222 [Bacteroides cellulosilyticus DSM 14838] gi|224519064|gb|EEF88169.1| hypothetical protein BACCELL_04222 [Bacteroides cellulosilyticus DSM 14838] Length = 393 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 15/140 (10%) Query: 166 CGLRISEALSLTPQNI-MDDQSTLR---IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221 CGLR S+ ++LT +I MDD R IQ K + +PL K + + D D+ Sbjct: 249 CGLRHSDIIALTWGDIEMDDDGNSRLYIIQKKTKEAISLPLSQEAIKQLPKREDAKEDDI 308 Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281 +F+ + + ++ Q G+ T HT RH+ AT LL+ G DL Sbjct: 309 -------IFKKLITLGRTNEILPKWAEQA----GIKKHITFHTARHTHATMLLTLGVDLY 357 Query: 282 SIQSILGHFRLSTTQIYTNV 301 ++ +LGH + TTQIY + Sbjct: 358 TVSKLLGHTNIQTTQIYAKL 377 >gi|186474496|ref|YP_001863467.1| integrase family protein [Burkholderia phymatum STM815] gi|184198455|gb|ACC76417.1| integrase family protein [Burkholderia phymatum STM815] Length = 335 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 77/316 (24%), Positives = 134/316 (42%), Gaps = 34/316 (10%) Query: 5 NLPEIVS-FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 N+P+ + F +L + Q ++ L +R +S T+ SY DT + L F+ E+ + Sbjct: 2 NIPDPAARFSVLLQ-QFFMDYLIGQRNVSPRTVASYR-DTFRLL----FHFAEQHVGRPP 55 Query: 64 RQLSYTEIRA-----FISKRRTQKIGD-RSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117 +L T+ A F++ + RS L+ ++SF Y E + L + Sbjct: 56 HKLRLTDFNAGLILDFLNHLEVGRHNTIRSRNARLAAVRSFAHY----AALQEPSALPV- 110 Query: 118 NLKKSNSLPRALNEKQALTLVD----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173 L+ ++P ++ + + +L + W R+ A+L LY G R+SE Sbjct: 111 -LQGVLAIPMKRFDRPMVGFLSREEMQCILAAPNADTWCGKRDQAMLATLYNTGARVSEL 169 Query: 174 LSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232 S+ +++ + S + + GKG K R +PL K + + +N + Q LF Sbjct: 170 TSMRVKDVTLGRGSCVLLHGKGRKERTLPLWNDTAKLLRRWLR----QINPDPQQWLFPN 225 Query: 233 IRGKPLN-PGVFQRY-IRQLRRYLGLPL----STTAHTLRHSFATHLLSNGGDLRSIQSI 286 G + GV R + G P + H +RH+ A H+L G DL I Sbjct: 226 RSGGQMTRAGVTDRLKLAAATASEGYPPLKARHVSPHVVRHATAMHMLQGGVDLSLIALW 285 Query: 287 LGHFRLSTTQIYTNVN 302 LGH +TT +Y + Sbjct: 286 LGHESPATTHMYIEAD 301 >gi|315615273|gb|EFU95909.1| integrase [Escherichia coli 3431] Length = 343 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 21/144 (14%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 I + G R SEA +L + + T + KG K R VP+ Sbjct: 199 IAKICLATGARWSEAENLQGHQLSKYRITY-TKTKGKKNRTVPI---------------- 241 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278 +L +LP RG P F+R ++ R + LP H LRH+FA+H + NGG Sbjct: 242 -SQDLYNELPKNRGRLFTPCRK-AFERAVK--RAGIELPEGQCTHVLRHTFASHFMMNGG 297 Query: 279 DLRSIQSILGHFRLSTTQIYTNVN 302 ++ ++ ILGH + T IY + + Sbjct: 298 NILVLRDILGHADIKMTMIYAHFS 321 >gi|295697303|ref|YP_003590541.1| integrase family protein [Bacillus tusciae DSM 2912] gi|295412905|gb|ADG07397.1| integrase family protein [Bacillus tusciae DSM 2912] Length = 326 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 75/157 (47%), Gaps = 16/157 (10%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFD 220 LLY GLRI EAL+L ++ TL I+ K DK R +P+ P++ + + Y + Sbjct: 148 LLYSSGLRIGEALALRGGDVNLQTGTLHIRVAKLDKERRIPVHPALVQRMERYVKV--LG 205 Query: 221 LNLNIQLPLFRGIRGKPLNPG----VFQRYIRQLR-RYLGLPLSTTAHTLRHSFATHLLS 275 + ++ PLF G G+ F+R++ + + G H LRH+FA H L Sbjct: 206 ITPTLEAPLFPGPSGQSYCESTIYDAFRRFLWEANISHGGRGRGPRLHDLRHTFAVHCLR 265 Query: 276 ----NGGDLRS----IQSILGHFRLSTTQIYTNVNSK 304 G DL + + +GH L +TQ+Y + ++ Sbjct: 266 KWVLEGVDLTVALPYLSAYMGHTSLKSTQMYLRLTAE 302 >gi|325299560|ref|YP_004259477.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324319113|gb|ADY37004.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 407 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 16/151 (10%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYY 214 A ++ LY CGLR + LT +N+ L+ + KG ++P + +L Sbjct: 255 AFIFCLY-CGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIP-LNDGLLSII 312 Query: 215 DLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 P D N L LP + + +++ + G+ + H RHSFA ++ Sbjct: 313 GEAPADKNCLIFDLPSYESC----------CKSVKRWVKRAGIDKHISWHCARHSFAVNI 362 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 L+NG +++++ S+LGH L T+ YT K Sbjct: 363 LNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393 >gi|225377376|ref|ZP_03754597.1| hypothetical protein ROSEINA2194_03024 [Roseburia inulinivorans DSM 16841] gi|225210777|gb|EEG93131.1| hypothetical protein ROSEINA2194_03024 [Roseburia inulinivorans DSM 16841] Length = 329 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 16/161 (9%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFD 220 +LYGCG RISE L+LT ++ ++ + I K R+VP+ ++ Y + D Sbjct: 148 MLYGCGFRISELLNLTVGDVDIERGIIHIHDSKNGNERLVPMAATLAARCRTYTESVHND 207 Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR-----RYLGLPLSTTAHTLRHSFATHLLS 275 + P F G +R+ R+ YLG L H LRH+F H L+ Sbjct: 208 HEED--FPFFFKKDGTGYCVSNIERHFREQLWLAGIPYLGKELGPRVHDLRHTFICHRLN 265 Query: 276 ----NGGDLRSIQSIL----GHFRLSTTQIYTNVNSKNGGD 308 G DL ++ IL GH +++TQ Y + ++ D Sbjct: 266 QWAKEGVDLTAMLPILSKYVGHTGIASTQYYLKLTAEAFPD 306 >gi|212702804|ref|ZP_03310932.1| hypothetical protein DESPIG_00836 [Desulfovibrio piger ATCC 29098] gi|212673666|gb|EEB34149.1| hypothetical protein DESPIG_00836 [Desulfovibrio piger ATCC 29098] Length = 447 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 18/150 (12%) Query: 167 GLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN-LN 224 GLR E ++L ++ D T+R+ G D +R IL L P LN L Sbjct: 274 GLRAGELVNLRCESCDADSGTIRVLVGAKDSLRSTK---GGETRILRAGRLYPESLNMLR 330 Query: 225 IQLP------LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-------HTLRHSFAT 271 +L LF G G+ + R +R++ LG T HTLRH+FAT Sbjct: 331 ERLGRLKTGFLFPGPDGRERDANGLNRAMRRIMDKLGFNDGVTDPRNRVVWHTLRHTFAT 390 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +L G D+ ++++++GH ++TT+IY ++ Sbjct: 391 RMLEAGLDIYALKTLMGHASVTTTEIYLHI 420 >gi|270297099|ref|ZP_06203298.1| phage integrase [Bacteroides sp. D20] gi|270273086|gb|EFA18949.1| phage integrase [Bacteroides sp. D20] Length = 368 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 56/255 (21%), Positives = 105/255 (41%), Gaps = 37/255 (14%) Query: 52 FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES 111 +YT K + +++ R FI +K+ +++ ++ I+ F K+LKK Sbjct: 125 YYTSMKKYFEYANEVNMDNCRRFIKSLEEEKLSPATIRLRITAIEKFSKWLKKPIELKRP 184 Query: 112 NI---LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY----LLY 164 I L++ N+ + R L +++ A+N+ Y +L Sbjct: 185 KIKRKLDVNNVPTEDEYNRLL--------------------EYLKAKNNKDYYFFIKVLG 224 Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224 G R+SE T ++I+ + TL+ GKG+K R +++ Y + Sbjct: 225 TTGARLSEFQQFTWEDIISGEVTLK--GKGNKYRRFFFQKQLQQEAKAY-------AKEH 275 Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSI 283 + LF + P F ++++ ++ G+ AH RH FA L D+ + Sbjct: 276 GKTGLFAVGKFGPFTQRGFSQHLKAWGKHCGIDSRKMHAHAFRHFFAKMFLKKNKDVIQL 335 Query: 284 QSILGHFRLSTTQIY 298 +LGH + TT+IY Sbjct: 336 ADLLGHGSVDTTRIY 350 >gi|2392139|pdb|1AIH|A Chain A, Catalytic Domain Of Bacteriophage Hp1 Integrase gi|2392140|pdb|1AIH|B Chain B, Catalytic Domain Of Bacteriophage Hp1 Integrase gi|2392141|pdb|1AIH|C Chain C, Catalytic Domain Of Bacteriophage Hp1 Integrase gi|2392142|pdb|1AIH|D Chain D, Catalytic Domain Of Bacteriophage Hp1 Integrase Length = 170 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 60/142 (42%), Gaps = 21/142 (14%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 I+ + G R SEA +LT +M + T K K R VP+ E +D+ P Sbjct: 30 IVRICLATGARWSEAETLTQSQVMPYKITF-TNTKSKKNRTVPISD-------ELFDMLP 81 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278 RG+ N LR + LP H LRH+FA+H + NGG Sbjct: 82 -------------KKRGRLFNDAYESFENAVLRAEIELPKGQLTHVLRHTFASHFMMNGG 128 Query: 279 DLRSIQSILGHFRLSTTQIYTN 300 ++ ++ ILGH + T Y + Sbjct: 129 NILVLKEILGHSTIEMTMRYAH 150 >gi|67924958|ref|ZP_00518346.1| Phage integrase [Crocosphaera watsonii WH 8501] gi|67853195|gb|EAM48566.1| Phage integrase [Crocosphaera watsonii WH 8501] Length = 316 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 71/154 (46%), Gaps = 19/154 (12%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213 R+ A+L +L G GLR +E ++L+ + D L+I QGKGDK R V L S + + + Sbjct: 153 RDLALLAILRGAGLRRAELVALSVNDFTPDGGILQIRQGKGDKERTVYLPLSAVEIVNRW 212 Query: 214 YD---------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 D LCP I FR + + V++ I R S + H Sbjct: 213 LDLRSRTRGALLCPIRKGGAI---CFRHLH----SDAVYK--ILAKRAGEAAIESFSPHD 263 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 R +F + LLSNG DL ++Q + GH T Y Sbjct: 264 FRRTFCSDLLSNGVDLVTVQKLAGHSSPDVTAKY 297 >gi|237708556|ref|ZP_04539037.1| transposase [Bacteroides sp. 9_1_42FAA] gi|229457485|gb|EEO63206.1| transposase [Bacteroides sp. 9_1_42FAA] Length = 320 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 13/145 (8%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKG-DKIRIVPLLP--SVRKAILEYYDL 216 ++ C GL S+ L ++I++D + +R KG K +I+ +P + ILE Y Sbjct: 164 FVFCCFTGLAFSDIHGLRKEHIVEDSNGVRWIRKGRQKTKIMCNIPLIEIPLKILEKYST 223 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 + + P+ + + +N Y+++L G+ + T H RH+FAT L+N Sbjct: 224 NEYCKKHGVLFPV---LCNQKMNA-----YLKELADICGIKKTLTTHVGRHTFATFALAN 275 Query: 277 GGDLRSIQSILGHFRLSTTQIYTNV 301 G + S+ +LGH + T+ Y V Sbjct: 276 GVSIESVAKMLGHTNVQMTRHYARV 300 >gi|266619589|ref|ZP_06112524.1| integrase/recombinase, phage integrase family [Clostridium hathewayi DSM 13479] gi|288868877|gb|EFD01176.1| integrase/recombinase, phage integrase family [Clostridium hathewayi DSM 13479] Length = 279 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 11/165 (6%) Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 L+ + E K D R S ++ L G+R+SE +T + + ++ I GKG K R V Sbjct: 113 LVRAAREKK--DERLSLLIQTLCSTGIRVSEHRCITVEALRS--GSICIDGKG-KERAV- 166 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLST 260 LP + L+YY C + + P+F GKPLN ++ L + G+ P Sbjct: 167 FLPKKLQKQLKYY--CK-EKKITTG-PVFITKSGKPLNRCNIWAEMKALCKNAGIEPQKV 222 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 H LRH FA D+ + ILGH + TT+IYT+ + Sbjct: 223 FPHNLRHLFALTYYRLEKDIVRLADILGHANIETTRIYTSTTEEE 267 >gi|167463333|ref|ZP_02328422.1| tyrosine recombinase xerC [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384830|ref|ZP_08058491.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150299|gb|EFX43801.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 317 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 68/273 (24%), Positives = 122/273 (44%), Gaps = 25/273 (9%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T ++YE +QF F+++ +++T + + + I+ +K + + + S+ ++ Sbjct: 37 TRRNYERALQQFREFISYKPFQQVTWKEVEAYKLSLIQGRFAKSK-KPLAPASVAAFITP 95 Query: 95 IKSFLKYLKKRKITTESNI-LNMRNLKKSNSLP--RALNEKQALTLVD-NVLLHTSHETK 150 ++SF K+ +ESNI + N S +P + ++K LT + LL + Sbjct: 96 LRSFYKW------GSESNIGIFKHNPTVSVRMPPIQVNSKKHFLTKYEVGKLLQCLKQQ- 148 Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-----QGKGDKIRIVPLLPS 205 RN I L GLR+SE +S+ + D + + KG K R + + + Sbjct: 149 --SLRNYLIGLSLVLLGLRVSELVSMKWGDFHPDPLETSVWLTIPKAKGGKSRDIKIPKA 206 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + K E+ + N + L LF P++ +R I+ G+ T H L Sbjct: 207 LWKLYTEHAETLSESANPHANLQLF------PISVRQIERIIKSAGIQSGIVKKLTPHWL 260 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 RH+ AT L G L+ +Q LGH ++TTQ Y Sbjct: 261 RHTNATLALLQGASLQQVQETLGHSHINTTQRY 293 >gi|300825416|ref|ZP_07105489.1| site-specific recombinase, phage integrase family [Escherichia coli MS 119-7] gi|300522125|gb|EFK43194.1| site-specific recombinase, phage integrase family [Escherichia coli MS 119-7] Length = 260 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 36/180 (20%) Query: 153 DARNSAILYLLYGCGLRISEAL-------SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 D R +L L+ G RI+EAL SLTP +TL+ Q R +P+ Sbjct: 57 DLRRKMLLATLWNTGARINEALALTRGDFSLTPPYPFVQLATLK-QRTEKAARTAGRMPA 115 Query: 206 VRKAILEYYDLCPFD----------LNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRY 253 ++ + L P + +++P+ R + G+ +++ R +R + Sbjct: 116 GQQT----HRLVPLSDTWYLSQLQTMVATLKIPMERRNKRTGRTEKARIWEVTDRTVRTW 171 Query: 254 LG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +G + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 172 IGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|312111596|ref|YP_003989912.1| integrase [Geobacillus sp. Y4.1MC1] gi|312112616|ref|YP_003990932.1| integrase [Geobacillus sp. Y4.1MC1] gi|311216697|gb|ADP75301.1| integrase family protein [Geobacillus sp. Y4.1MC1] gi|311217717|gb|ADP76321.1| integrase family protein [Geobacillus sp. Y4.1MC1] Length = 379 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 58/230 (25%), Positives = 105/230 (45%), Gaps = 35/230 (15%) Query: 85 DRSLKRSLSG----IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 D+ LK+ +G K FL ++ K K + +IL ++ +K + L +++ L++ Sbjct: 131 DKLLKQVFTGGRTRYKDFLYHVNKNK-PSNRHILKVKEPRKK---LKVLTKEEVQQLIEA 186 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRIQ-------G 192 + R+ ++ LL+ GLRI EALSL ++ I D ++ RI+ Sbjct: 187 T----------TNIRDRLLIQLLFETGLRIGEALSLFIEDFIFDHKNGHRIRLVNRGELE 236 Query: 193 KGDKIRIVPLLPSVRKAILEYYD------LCPFDLNLNIQLPLFRGIR-GKPLNPGVFQR 245 G K++ V +A++ D + DL+ N RG G+P+ + Sbjct: 237 NGAKLKTGEREIYVSQALMNLLDDYLYEVVDELDLDTNFVFVKLRGKNIGQPMTYSDVEA 296 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 ++LR+ G+ + H LRH+ AT D++ +Q LGH ++ TT Sbjct: 297 LFKRLRKKTGIHVH--PHLLRHTHATMYYQQTKDIKQVQERLGHSQIQTT 344 >gi|307566131|ref|ZP_07628589.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307345319|gb|EFN90698.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 407 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 17/167 (10%) Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIR 198 L+ ++ + + R + IL L CGLR + LT +NI L+ + KG Sbjct: 240 LIQCHYDNENPNVRRAFILCLY--CGLRFCDVKDLTYKNIDYTNRLLKFEQNKTKGHSAH 297 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 ++P + +L P DL+ +I LP + + +++ + G+ Sbjct: 298 SGVVIP-LNDGLLSLIGDAPEDLDSSIFNLPSYESC----------SKSVKRWVKRAGIN 346 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + H RHSFA ++L+NG +++++ S+LGH L T+ YT K Sbjct: 347 KHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393 >gi|269120003|ref|YP_003308180.1| integrase family protein [Sebaldella termitidis ATCC 33386] gi|268613881|gb|ACZ08249.1| integrase family protein [Sebaldella termitidis ATCC 33386] Length = 344 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 33/187 (17%) Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARN----SAILYLLYGCGLRISEALSLTPQNIM 182 + L EK T + LL W + +N IL ++Y G+RI E LSL Q++ Sbjct: 164 KVLKEKSVFTDAEIDLL-------WDNLQNFKYADTILIMIY-TGMRIGELLSLMKQDVD 215 Query: 183 DDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239 + T+ ++ + R++P+ P +++ I Y+ D + N Sbjct: 216 LIEQTITVKESKTAAGRNRVIPIHPRIKELIHIRYEHSNID-----------NLIASATN 264 Query: 240 PGVFQRYIRQLRRYLG-----LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 + Y+ LR + L ++ T H RH+FAT L GG+ +I+ ++GH + Sbjct: 265 KTSLE-YVNYLRHFFAPVMKSLKMNHTPHDCRHTFATRLNDAGGNATAIKKMIGHESFTL 323 Query: 295 TQ-IYTN 300 T+ +YT+ Sbjct: 324 TEKVYTH 330 >gi|255505350|ref|ZP_05345621.3| putative phage integrase/recombinase [Bryantella formatexigens DSM 14469] gi|255268514|gb|EET61719.1| putative phage integrase/recombinase [Bryantella formatexigens DSM 14469] Length = 306 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 9/153 (5%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212 + R S I+ + G+R+SE +T + + ++T+ ++GK R+V LLP+ IL Sbjct: 149 NVRLSLIMQTICSTGIRVSELEFITVEALRSRRATVSLKGK---TRVV-LLPAELCRILR 204 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFAT 271 Y + N++ + +F GKPL+ ++ L G+ P H LRH FA Sbjct: 205 KY---VKEHNIS-EGCIFVSRSGKPLDRSNIFHDMKALCETAGVNPEKVFPHNLRHLFAI 260 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 D+ + ILGH + TT+IYT VN + Sbjct: 261 TYYDVEKDISHLADILGHASIDTTRIYTMVNGE 293 >gi|124028392|ref|YP_001013712.1| integrase [Hyperthermus butylicus DSM 5456] gi|123979086|gb|ABM81367.1| possible integrase [Hyperthermus butylicus DSM 5456] Length = 406 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 11/149 (7%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLC 217 I+ LL+ GLR EA+ L +I + +R++G K + RIV P A+ + L Sbjct: 152 IVALLFETGLRAQEAVELRLGDIDFQRREIRVRGAKYGEERIVLYGPLTEYAMQIWLQLH 211 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSN 276 P D+ + +L GI G+++R ++ L + GL P H LRH+FAT L Sbjct: 212 P-DMKPDDKL---LGISYS----GLYKR-LKTLAKRAGLDPRKVRPHVLRHTFATEALRR 262 Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 G L ++Q +LGH + TQ+Y ++ +++ Sbjct: 263 GLPLPAVQRLLGHKDIKVTQVYLHLVNED 291 >gi|134045285|ref|YP_001096771.1| tyrosine recombinase XerC subunit [Methanococcus maripaludis C5] gi|132662910|gb|ABO34556.1| tyrosine recombinase XerC subunit [Methanococcus maripaludis C5] Length = 291 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 84/190 (44%), Gaps = 16/190 (8%) Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178 L+KS L ++Q L+ NV + L G+R SE +L Sbjct: 105 LRKSKKEREYLTKEQTNYLLSNVF----------EYEYRLFLMFFLHTGVRNSEFRNLKI 154 Query: 179 QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238 ++ D+ T+RI GKG K R V + + + L+ + L D F G P+ Sbjct: 155 HDVDMDERTIRILGKGRKERYV-FIDNELYSYLKIW-LIQRDSKFPKSDHFFVNRLGNPI 212 Query: 239 ---NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 + F Y+ ++ + + T H LRH+FAT + G DL+++ ILGH + TT Sbjct: 213 RLTHLVSFTDYLNEVSKN-KIGFRITPHILRHTFATRCIDMGMDLKTLSLILGHEDIKTT 271 Query: 296 QIYTNVNSKN 305 IY + N ++ Sbjct: 272 SIYLHKNKES 281 >gi|46200178|ref|YP_005845.1| DNA integration/recombination/invertion protein [Thermus thermophilus HB27] gi|46197806|gb|AAS82218.1| DNA integration/recombination/invertion protein [Thermus thermophilus HB27] Length = 392 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 59/280 (21%), Positives = 118/280 (42%), Gaps = 35/280 (12%) Query: 63 IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKK 121 ++++ +RA + + R++ R L +K+ + + ++ + +R L K Sbjct: 121 LQEVKPVHVRAAVDRVAEAGYAPRTVNRVLMRLKALFREALRLELVARNPAEAVRLRLPK 180 Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 RAL ++ L++ S + + +L L+ GLR EAL+L ++I Sbjct: 181 GEKTARALEPQEVARLLEAAEASRSKDM-------ALLLRLMLETGLRRGEALALQWRDI 233 Query: 182 MDDQSTLRI-----QGKGDKIRIVPLLPSVRKAILEYYD---------------LCPFDL 221 + L + + +G P P+ ++ + L P ++ Sbjct: 234 DLEAGELTVWRSWTKARGKGAFSEPKTPTAKRKVPLPRGLLLRLKARREELLERLTPEEV 293 Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281 + L L G+ KP++P F Y+R+L GL H LRH++AT LS G L Sbjct: 294 D---GLFLVGGV--KPVDPDAFNHYLRRLAERAGLG-RVRVHDLRHTWATLALSRGVPLE 347 Query: 282 SIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQTHPS 320 + LGH + T +Y ++ + W++++ + +P+ Sbjct: 348 VVSERLGHASPTITLNVYRHLLEEERRGWVLDLEELLYPA 387 >gi|330907861|gb|EGH36384.1| resolvase [Escherichia coli AA86] Length = 259 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 36/180 (20%) Query: 153 DARNSAILYLLYGCGLRISEAL-------SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 D R +L L+ G RI+EAL SLTP +TL+ Q R +P+ Sbjct: 57 DLRRKMLLATLWNTGARINEALALTRGDFSLTPPYPFVQLATLK-QRTEKAARTAGRMPA 115 Query: 206 VRKAILEYYDLCPFD----------LNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRY 253 ++ + L P + +++P+ R + G+ +++ R +R + Sbjct: 116 GQQT----HRLVPLSDTWYVSQLQTMVATLKIPMERRNKRTGRTEKARIWEVTDRTVRTW 171 Query: 254 LG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +G + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 172 IGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|329963222|ref|ZP_08300959.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] gi|328528918|gb|EGF55858.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] Length = 308 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 81/189 (42%), Gaps = 34/189 (17%) Query: 142 LLHTSHETKWIDA-------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 +L +H K +D RN I Y+ GLRI E +L +I D T+ +Q Sbjct: 109 VLTVAHHKKILDYIRQNFTFRNLGI-YISLSTGLRIGEVCALRWSDIDVDSGTISVQRTI 167 Query: 195 DKIRIVPL----------LPSVRKAILEYYDLCPFDLNL-NIQLPLFRGIRGK------- 236 ++I I+ P + + E P L + PL + + Sbjct: 168 ERIYIIEGEMKHTELVINTPKTKNSCRE----IPMSKELLALVKPLKKVVNADYYILTNE 223 Query: 237 --PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 P P ++ Y ++L +LG+P H LRHSFAT + + D +++ +LGH +ST Sbjct: 224 PLPTEPRTYRNYYKRLMEHLGIP-KLKFHGLRHSFATRCIESNCDYKTVSVLLGHSNIST 282 Query: 295 T-QIYTNVN 302 T +Y + N Sbjct: 283 TLNLYVHPN 291 >gi|323963898|gb|EGB59392.1| phage integrase [Escherichia coli M863] Length = 337 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 65/144 (45%), Gaps = 21/144 (14%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 I + G R SEA +L I + T + KG K R VP+ + YD P Sbjct: 199 IAKICLATGARWSEAENLQGHQISKYRITY-TKTKGKKNRTVPISQDL-------YDELP 250 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278 + + LF R F+R ++ R + LP H LRH+FA+H + NGG Sbjct: 251 KN-----RRKLFTPCRK------AFERAVK--RAGIDLPEGQCTHVLRHTFASHFMMNGG 297 Query: 279 DLRSIQSILGHFRLSTTQIYTNVN 302 ++ ++ ILGH + T IY + + Sbjct: 298 NILVLRDILGHADIKMTMIYAHFS 321 >gi|295692919|ref|YP_003601529.1| integrase/recombinase [Lactobacillus crispatus ST1] gi|295031025|emb|CBL50504.1| Integrase/recombinase [Lactobacillus crispatus ST1] Length = 203 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 49/203 (24%), Positives = 88/203 (43%), Gaps = 14/203 (6%) Query: 17 ERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS 76 E +L L+ ER S T+ +Y+ D + F E ++ +I+ ++ Sbjct: 7 ELDQFLSYLQNERHYSAKTVLAYQTDLHEAERFW----HENGGFPGWTKVRERDIQVYLQ 62 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 +K+ S R +S + SF ++L +RK+ + + LP+ + + Sbjct: 63 HLAERKLARSSQLRKMSSLHSFYRFLTRRKLVAIDPTQGITLRRGEKKLPQFFYQPELKQ 122 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 + D++ K + RN A+ L Y G+R+SE +LT + D T+ + GKG+K Sbjct: 123 VFDSL-----KGNKPLTMRNLAMFELFYATGMRVSEVSNLTLNQLDLDLQTILVHGKGNK 177 Query: 197 IRIVPLLPSVRKAILEYYDLCPF 219 R V +K Y+D C F Sbjct: 178 DRYVAFDDKTKK----YFD-CLF 195 >gi|325680339|ref|ZP_08159898.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] gi|324107968|gb|EGC02225.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] Length = 327 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 48/213 (22%), Positives = 92/213 (43%), Gaps = 18/213 (8%) Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + SF +L++ +S + + +K ++++ ++ + D+ D Sbjct: 121 LSSFFSWLEEENYIMKSPVRRIHKIKTASTIKDTYTDEALEQMRDDC----------TDL 170 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ A++ +L G+R+ E + L +I ++ + GKG+K RIV + + +Y Sbjct: 171 RDLALIDMLASTGMRVGELVLLNRSDIDFEERECVVLGKGNKERIVYFDARTKLHLKQYL 230 Query: 215 DLCPFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 D D LF ++ K L G + IR++ + L + H R + AT Sbjct: 231 DSRTDD-----NEALFVSLKAPHKRLKIGGVEVRIRKIGKRLNIQ-KAHPHKFRRTLATM 284 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + G + +Q +LGH R+ TT Y V N Sbjct: 285 AIDKGMPIEQLQQLLGHRRIDTTLQYAMVKQSN 317 >gi|238064005|ref|ZP_04608714.1| phage integrase family site-specific recombinase [Micromonospora sp. ATCC 39149] gi|237885816|gb|EEP74644.1| phage integrase family site-specific recombinase [Micromonospora sp. ATCC 39149] Length = 306 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 96/223 (43%), Gaps = 14/223 (6%) Query: 72 RAFISKRRTQKIGDRSLKRSLS---GIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPR 127 RA + + I RS +L+ G++ F K+L + S + +R K L Sbjct: 73 RAHVEAFQAWMIDTRSASTALNKHKGLQQFFKWLLVDEQAIDRSPMERVRQPKTLRKLIP 132 Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 + ++ L+D + + R+ A++ L G R+SE +L ++ + + Sbjct: 133 VMRDEDTGKLLD-----ACRGKGFANMRDEALIRLYCNTGARLSEVGNLLVADVDLNTES 187 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIR-GKPLNPGVFQR 245 + GKG K R V P +A+ Y L D + LP L+ R G PL P + Sbjct: 188 VHFHGKGAKDRRVRFGPKTARALSRY--LRARDKHKGAALPQLWLAERGGAPLTPNGIKI 245 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288 +++L + G+P AH RH+FA GGD + +LG Sbjct: 246 LLKRLGKAAGVP-DVHAHRWRHNFAHEWKRAGGDTGDLMLLLG 287 >gi|300714681|ref|YP_003739484.1| Site-specific recombinase, phage integrase family [Erwinia billingiae Eb661] gi|299060517|emb|CAX57624.1| Site-specific recombinase, phage integrase family [Erwinia billingiae Eb661] Length = 335 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 2/69 (2%) Query: 233 IRGKPLNPGVFQRYIRQLRRYL-GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291 I GK N ++ + +QLR + LP H LRH+FA+H + NGG++ +++ ILGH + Sbjct: 239 ISGKLFNVD-YENFRQQLREVIPDLPRGQATHVLRHTFASHFMMNGGNIITLRDILGHSK 297 Query: 292 LSTTQIYTN 300 + T IY + Sbjct: 298 IEQTMIYAH 306 >gi|229113593|ref|ZP_04243041.1| Integrase-recombinase [Bacillus cereus Rock1-15] gi|228669892|gb|EEL25287.1| Integrase-recombinase [Bacillus cereus Rock1-15] Length = 390 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 65/153 (42%), Gaps = 10/153 (6%) Query: 156 NSAILYLLYGCGLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 N +L L G RI E +++ D + L++ GKG K+R + + + + I E Sbjct: 218 NYTLLLALASTGARIQELCRTRVKDLYYDGKYWLKVIGKGGKVRELFISEHLYQCICEVR 277 Query: 215 DLCPFD--LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------STTAHTLR 266 F L+ PLF RG NP + + + L TAHT R Sbjct: 278 RKRGFQTILDQGDGDPLFVNQRGNFYNPKTLSNQVTDMIKKTNLEFLQYRENPVTAHTFR 337 Query: 267 HSFATHLLSNG-GDLRSIQSILGHFRLSTTQIY 298 H+FA + G DL + LGH + TT+IY Sbjct: 338 HAFAIMAVEQGNADLYHLMQTLGHENIQTTKIY 370 >gi|126661412|ref|ZP_01732472.1| integrase-recombinase protein [Cyanothece sp. CCY0110] gi|126617296|gb|EAZ88105.1| integrase-recombinase protein [Cyanothece sp. CCY0110] Length = 317 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 68/295 (23%), Positives = 129/295 (43%), Gaps = 33/295 (11%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE----IRAFISKRRT 80 L +E S +T + YE D R F ++ ++ + ++S ++ + A+ + + Sbjct: 20 LWLEDKSSAMTRREYEKDLRYFFKVMSGKEVDEELVSAFLKVSQSQANAALMAYKATLKR 79 Query: 81 QKIGDRSLKRSLSGIKSFL---------KYLKKRKITTESNILNMRNLKKSNSLPRALNE 131 +++ ++ R +S +KSF+ +Y K +++E ++ + ++ +P A Sbjct: 80 RELAPTTINRKISAVKSFVSTANRLGLCQYSLKDAVSSE----KLKPYRDTSGIPLA-EF 134 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 K+ L L D L R+ A+L L + LR +E L + + + L ++ Sbjct: 135 KKVLALCDLTTLKGK--------RDRALLMLFWSNALRRNEVSLLDIGDFVPSRRILWVR 186 Query: 192 GKG-DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI----RGKPLNPGVFQRY 246 GKG + V L P KAI ++ + PLF + RG L+ + Sbjct: 187 GKGRSEKESVDLSPKTIKAICDWL-ADRGSAGIKSSSPLFISLDSRSRGSRLSGDGLYKI 245 Query: 247 IRQLRRYLGLPLSTTAHTLRHS-FATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 IR + G+ + H +RHS T L + GD+R +Q + H L+T IY + Sbjct: 246 IRCYCKDAGIDKLMSPHRIRHSSITTALDKSDGDVRKVQKLSRHKNLNTLMIYDD 300 >gi|313147493|ref|ZP_07809686.1| integrase [Bacteroides fragilis 3_1_12] gi|313136260|gb|EFR53620.1| integrase [Bacteroides fragilis 3_1_12] Length = 345 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 22/147 (14%) Query: 167 GLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYD---LCPF 219 GL S+ L+P++++ D++ L I+ K +I +P+LP V +ILE Y C Sbjct: 196 GLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLP-VAVSILEKYKNVAECTG 254 Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGG 278 L LP+ R Y++++ G+ + + HT RHS+AT + L+NG Sbjct: 255 KL-----LPVLSNQR--------MNSYLKEIADVCGIHKNLSTHTARHSYATSICLANGV 301 Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKN 305 + ++ +LGH S T+ Y V +N Sbjct: 302 SMENVAKMLGHADTSITKHYARVLDQN 328 >gi|291515341|emb|CBK64551.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 374 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 56/218 (25%), Positives = 91/218 (41%), Gaps = 16/218 (7%) Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--PRALNEKQALTLVDNVLLHTSH 147 R+L + F + +K + + E N + + N+ RAL++ + +VD S Sbjct: 157 RTLRAV--FNRAIKLKAVAREKNPFTDYKISRFNTRTPKRALSKTDVMKIVD---ADCSA 211 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207 E+ S + G+ + +LT NI+D + + Q I VPL Sbjct: 212 ESDSCRLAQSVFTFSYLCGGISFVDVANLTSDNIVDGRLSYNHQKTHGAIH-VPLSERAM 270 Query: 208 KAILEYYDLC-------PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 + + Y + C P + +P+ + R + V +RQL R L + Sbjct: 271 RIVNRYAEACEQSGYLFPILDSRRHTMPMQKRNRVHKVCHQV-NTELRQLARRLNISGEV 329 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 T + RHSFAT L +G ++ I LGH L TTQIY Sbjct: 330 TTYCARHSFATVLKKSGVNIGIISEALGHHSLKTTQIY 367 >gi|229073648|ref|ZP_04206763.1| Tyrosine recombinase [Bacillus cereus F65185] gi|228709503|gb|EEL61562.1| Tyrosine recombinase [Bacillus cereus F65185] Length = 358 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 69/304 (22%), Positives = 126/304 (41%), Gaps = 42/304 (13%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK---------RRTQKIGD 85 TL +Y D R F +L +E+ I ++ I+ +S+ ++ K + Q + + Sbjct: 43 TLLNYVYDFRVFFNWLL--SEQVIELKPIKDISFADLENLKKKDVENFMRFLKLQQNMQN 100 Query: 86 RSLKRSLSGIKSFLKYL------------------KKRKITTESNILNMRNLKKSNSLPR 127 S+ R +S +KS KYL K +I + LN R + + + Sbjct: 101 SSVNRKISALKSLFKYLTSLSENEDGECYFYRNVMAKIEIHKDKETLNARAKRMRSKIFH 160 Query: 128 ALNEKQALTLV--DNVLLHTSHETKWI---DARNSAILYLLYGCGLRISEALSLTPQNIM 182 ++++ L V ++ T H+ + R+ AIL L G G+R+SE L ++I Sbjct: 161 NNDDQEFLNYVKYEHEKSLTKHQLFYFLRDKDRDVAILSLFLGSGIRVSELADLRMEDIN 220 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKP 237 + + + KG+K V + P + +Y ++ P N+ L ++ +P Sbjct: 221 LKERLIDVIRKGNKEDSVWITPIALNDLEKYMEIRDNKYAPGKELKNVFLSKYKHT-AQP 279 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L+ Q + + + G +S H LRH+ A L D + LGH T + Sbjct: 280 LSVRAIQDIVEKYTKAYGKRMS--PHKLRHTLANKLYMEEKDSLQVMQQLGHTSQDTALL 337 Query: 298 YTNV 301 YT + Sbjct: 338 YTQL 341 >gi|222080268|ref|YP_002540132.1| integrase/recombinase [Agrobacterium vitis S4] gi|221738913|gb|ACM39692.1| integrase/recombinase [Agrobacterium vitis S4] Length = 325 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 64/281 (22%), Positives = 120/281 (42%), Gaps = 21/281 (7%) Query: 39 YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSF 98 YE + F+AF + ++TI ++S A+I + + + +L+ S ++ Sbjct: 25 YEVEEAVLYRFVAFTRNQFPGLETITEVS---ANAWIEAAQKRAVTPATLQGLTSPVRHL 81 Query: 99 LKYLKKRKITTESNILNMRNLKKSNS-LPRALNEKQ-ALTLVDNVLLHTSHETKWIDARN 156 ++L + + +L L++ + +P ++++ A H + Sbjct: 82 ARWLILHDVA--AYVLPTGVLRRPAAYIPHIYSDEELAAFFAQTDRCHYCSDVPLRHLVM 139 Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYD 215 + +Y CGLR SEA L +++ L I+ KG K R +P+ +R + Y+ Sbjct: 140 PVLFRTIYACGLRCSEARLLRVEDVDLATGVLLIRDAKGGKDRQIPVSEPIRVRLAHYH- 198 Query: 216 LCPFD-LNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLR-RYLGLPLSTTAHTLRHSFATH 272 FD + P RG R + N F+R++ Q R + G H RHSFA H Sbjct: 199 -AQFDWMGHEWFFPGRRGQRLRLSNVYNNFRRFLWQARISHGGRGHGPRVHDFRHSFAVH 257 Query: 273 LLSN--------GGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 L N G L +Q+ +GH+ ++ T Y + +++ Sbjct: 258 NLRNWFATGKDVGAMLPILQTYMGHYSIADTAYYLRLTAES 298 >gi|159046240|ref|YP_001541912.1| integrase family protein [Dinoroseobacter shibae DFL 12] gi|159046542|ref|YP_001542212.1| integrase family protein [Dinoroseobacter shibae DFL 12] gi|157913999|gb|ABV95431.1| phage integrase [Dinoroseobacter shibae DFL 12] gi|157914301|gb|ABV95731.1| phage integrase [Dinoroseobacter shibae DFL 12] Length = 508 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 79/303 (26%), Positives = 136/303 (44%), Gaps = 35/303 (11%) Query: 7 PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66 P ++SF WL+ ERG++ T++ Y + ++L L T E IR + Sbjct: 218 PRLISF------SEWLRR---ERGVAPETVRRYLNEVGRWLDSLG-ATPEDYDAAAIRSI 267 Query: 67 SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNS 124 + + R+Q S++++++ +++FL++ + S + + + +K ++ Sbjct: 268 ILDQ-----GEERSQS----SVRKTVTVLRAFLRFTIVQGACAPSLLHAVPSAVRRKLST 318 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 +PR + + ++ +L +T ++ R+ AIL LL LR + L +I Sbjct: 319 VPRTIPTAK----IEEILASCRTDTP-VEIRDRAILLLLARLALRAGDIWQLHLSDIDWR 373 Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLN----LNIQLPLFRGIRGKPLN 239 S LR+ GKG + ++PL V A+L Y D P + L +Q P F +R Sbjct: 374 TSRLRLHGKGRRGVMMPLPQDVGDALLVYIEDARPVVASNRVFLRVQAP-FTPLRSSAEI 432 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 G+ R L R L T +H RHS A+ L G DL I + L H TT IY Sbjct: 433 AGIVSRV---LSRGGFTDLPTGSHVFRHSLASAWLRGGADLDLIGAALRHTSRDTTAIYA 489 Query: 300 NVN 302 V+ Sbjct: 490 KVD 492 >gi|120603820|ref|YP_968220.1| phage integrase family protein [Desulfovibrio vulgaris DP4] gi|120564049|gb|ABM29793.1| phage integrase family protein [Desulfovibrio vulgaris DP4] Length = 356 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 61/267 (22%), Positives = 118/267 (44%), Gaps = 37/267 (13%) Query: 43 TRQFLI----FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL---KRSLSGI 95 +R++LI FL + ++ + L YT+I A + K K G+R+L +R L + Sbjct: 81 SRRWLIEITGFLNNHILPALSTTPLDNLRYTDIIALVDK----KWGNRTLATRQRYLGYL 136 Query: 96 KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155 K+ ++ + T + + R K+ N + L ++ +L H + +W Sbjct: 137 KALFRFGVEHGFTKNNPLSKWRKTKEPKR-----NLRLTLEGLELILAHAAPHLRWA--- 188 Query: 156 NSAILYLLYGCGLRI--SEALSLTPQNIMDDQSTLRIQGKG--DKIRIVPLLPSVRKAIL 211 L + + G R +E L ++ ++ T+ ++G + R +P++P R + Sbjct: 189 ----LEVEWEIGTRPGPTELFDLKWDDVDFERCTILVRGTKTHEANRTLPIMPEFRDRLQ 244 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 + + + +GKP+ +R R GLP + +RH FAT Sbjct: 245 KVMREQGGEYIITY--------KGKPVL--RMNTALRGACRRAGLPYHVRMYDIRHLFAT 294 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIY 298 +L+NG DL ++ +LGH ++TTQ + Sbjct: 295 VMLANGSDLAAVSKLLGHSTIATTQAH 321 >gi|223983261|ref|ZP_03633454.1| hypothetical protein HOLDEFILI_00734 [Holdemania filiformis DSM 12042] gi|223964754|gb|EEF69073.1| hypothetical protein HOLDEFILI_00734 [Holdemania filiformis DSM 12042] Length = 343 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 67/166 (40%), Gaps = 34/166 (20%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ AI+ LL G+R+ E + L +I + + GKG+K R V Sbjct: 187 RDLAIIDLLSSTGMRVGELVKLNINDIDFENRECVVFGKGNKERPVY------------- 233 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVF---------------QRYIRQLRRYLGLPLS 259 FD I L + R NP +F + +RQL R LG+ Sbjct: 234 ----FDARTKIHLKNYLNTRNDD-NPALFVSLDLPHDRLKISGVEIRLRQLGRRLGIS-K 287 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 H R + AT + G + +QS+LGH ++ TT Y VN N Sbjct: 288 VHPHKFRRTVATKAIDKGMPIEQVQSLLGHSQIDTTMHYAMVNQNN 333 >gi|301060695|ref|ZP_07201510.1| tyrosine recombinase XerC family protein [delta proteobacterium NaphS2] gi|300445092|gb|EFK09042.1| tyrosine recombinase XerC family protein [delta proteobacterium NaphS2] Length = 85 Score = 52.8 bits (125), Expect = 8e-05, Method: Composition-based stats. Identities = 24/52 (46%), Positives = 33/52 (63%) Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 P + H+LRHS+ATH+L G DL +Q ILGH + TT YT++ S G + Sbjct: 14 PKKISCHSLRHSYATHMLEAGVDLIELQQILGHVSVLTTTRYTHLTSNTGNN 65 >gi|301024203|ref|ZP_07187907.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 69-1] gi|300396658|gb|EFJ80196.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 69-1] Length = 179 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 66/157 (42%), Gaps = 21/157 (13%) Query: 159 ILYLLYGCGLRISEALSLT------------PQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 ++ L Y GLR+SE LSL Q I + ST+ K + I I L Sbjct: 1 MILLAYFHGLRVSELLSLQLSDLELTTEKIYIQRIKNGFSTVHPLQKEEVIAITNWLNER 60 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 +++++ P+ LF GKPL+ F + + GL + H LR Sbjct: 61 NSLNVKHFNDNPW---------LFVSRTGKPLSRQRFYNIVSAAGKNAGLNIKVHPHMLR 111 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 H+ L NG D R IQ LGH + T IYT NS Sbjct: 112 HACGYSLADNGVDTRLIQDYLGHRNIRHTVIYTASNS 148 >gi|270339765|ref|ZP_06005963.2| transposase [Prevotella bergensis DSM 17361] gi|270333760|gb|EFA44546.1| transposase [Prevotella bergensis DSM 17361] Length = 131 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 4/76 (5%) Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285 +LP+F G+ +P R +++ G+ T H RHS+AT L+ G D+ ++ Sbjct: 40 ELPVFAGLP----DPSWINRPVKKWVEAAGISKHITFHCFRHSYATLQLAGGTDIYTVSK 95 Query: 286 ILGHFRLSTTQIYTNV 301 +LGH + TTQ+Y V Sbjct: 96 MLGHTNVRTTQVYAKV 111 >gi|239628066|ref|ZP_04671097.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239518212|gb|EEQ58078.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 293 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 77/295 (26%), Positives = 132/295 (44%), Gaps = 43/295 (14%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 + E Q++L+N E ++ T+ Y D ++ L+F+ EE + + S E R + Sbjct: 6 INEFQSYLRNEE----KAEATISKYLHDVKEMLVFI----EE----MDLNKESLIEYRKY 53 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 +S + +++ LS I +FLK+ K E L ++ LK + ++EK+ Sbjct: 54 LS----SQYKPQTVNGKLSAINAFLKF----KDLLE---LKVKFLKVQKRV--YVDEKRE 100 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYL---LYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 LT D L + + N + YL LYG G+RISE +T + I ++ + ++ Sbjct: 101 LTEQDFKRLIAAADRNG----NKQLYYLMMVLYGTGIRISELPFVTVEAIETGRAEISMK 156 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLN-PGVFQRYIRQ 249 GK R++ ++ + + EY + NI Q +FR G+ L+ ++ R Sbjct: 157 GK---YRVIIFPKNLVRLLKEYTKVS------NIRQGCIFRTRSGRNLDRSNIYHSMKRL 207 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 R P H RH FA S +L + ILGH + TT+IY + K Sbjct: 208 CRDAQVQPSKVFPHNFRHLFAKCFYSIEKNLSHLADILGHSSIETTRIYVAASIK 262 >gi|9507462|ref|NP_052469.1| resolvase [Plasmid ColIb-P9] gi|32470177|ref|NP_863401.1| hypothetical protein R64_p046 [Salmonella enterica subsp. enterica serovar Typhimurium] gi|194447254|ref|YP_002043869.1| resolvase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|300904883|ref|ZP_07122706.1| site-specific recombinase, phage integrase family [Escherichia coli MS 84-1] gi|301305699|ref|ZP_07211787.1| site-specific recombinase, phage integrase family [Escherichia coli MS 124-1] gi|4512459|dbj|BAA75108.1| resolvase [Plasmid ColIb-P9] gi|20521545|dbj|BAB91609.1| phage integrase family protein [Salmonella enterica subsp. enterica serovar Typhimurium] gi|70610211|gb|AAZ05358.1| resolvase [Salmonella enterica] gi|194405558|gb|ACF65779.1| resolvase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|300403216|gb|EFJ86754.1| site-specific recombinase, phage integrase family [Escherichia coli MS 84-1] gi|300839039|gb|EFK66799.1| site-specific recombinase, phage integrase family [Escherichia coli MS 124-1] gi|315253185|gb|EFU33153.1| site-specific recombinase, phage integrase family [Escherichia coli MS 85-1] gi|321271591|gb|ADW79679.1| site-specific recombinase [Salmonella enterica subsp. enterica serovar Kentucky] gi|321271691|gb|ADW79778.1| putative site-specific recombinase [Escherichia coli] Length = 259 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 36/180 (20%) Query: 153 DARNSAILYLLYGCGLRISEAL-------SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 D R +L L+ G RI+EAL SLTP +TL+ Q R +P+ Sbjct: 57 DLRRKMLLATLWNTGARINEALALTRGDFSLTPPYPFVQLATLK-QRTEKAARTAGRMPA 115 Query: 206 VRKAILEYYDLCPFD----------LNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRY 253 ++ + L P + +++P+ R + G+ +++ R +R + Sbjct: 116 GQQT----HRLVPLSDAWYVSQLQTMVATLKIPMERRNKRTGRTEKARIWEVTDRTVRTW 171 Query: 254 LG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +G + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 172 IGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|317123483|ref|YP_004097595.1| integrase [Intrasporangium calvum DSM 43043] gi|315587571|gb|ADU46868.1| integrase family protein [Intrasporangium calvum DSM 43043] Length = 357 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 65/271 (23%), Positives = 107/271 (39%), Gaps = 24/271 (8%) Query: 58 ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117 IT Q +L ++A ++ + ++ R LS I F YL+ R + + Sbjct: 73 ITAQRTGRLEPGPVQAVVADGEPAGVATSTVARRLSSISGFFGYLQARGDVVVNPVPRGL 132 Query: 118 NLKKSNSLPRALNEKQALTLVDNVL----LHTSHETKWIDA-----RNSAILYLLYGCGL 168 ++ P Q + L V + T E + R+ A++ + GL Sbjct: 133 PTRRERQRP-----SQGVPLTRRVWRLSRILTPAEVDALTGALRTHRDRAMVAAMVLGGL 187 Query: 169 RISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQ 226 R E L L ++ + L I +GKG R+VP+ + Y + P + Sbjct: 188 RRCEVLGLRMGDVRVAERRLFIAEGKGGHQRLVPVSSRFFTELASYLEAERPRATGTDRV 247 Query: 227 LPLFRGI-RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI-- 283 + RG RG PL+ + RR GL T H LRH+ T L G L ++ Sbjct: 248 FVVLRGPNRGNPLSVRGIDEVLAGARRRAGL-AHATCHELRHTCLTRLREAGMALEAVQA 306 Query: 284 QSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 Q+ GH + +T+IY ++ DW+ Y Sbjct: 307 QAQAGHDSIESTRIYLHLAD----DWLASQY 333 >gi|237800512|ref|ZP_04588973.1| Phage integrase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023372|gb|EGI03429.1| Phage integrase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 137 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 14/120 (11%) Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG------ 241 L++ GKG K+R +P+ P I +Y + L N ++PLF +RGK G Sbjct: 6 LKVHGKGGKVRYLPMHPVAAGRIHQYLESSGHHL-ANRKVPLFIPLRGKLTGTGITANGI 64 Query: 242 --VFQRYIRQLRRYL-GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 V Y ++ + GL + H LR + AT+ L + D+ +Q LGH +STT+IY Sbjct: 65 YTVVTAYAKKAEIEVDGLGV----HGLRATAATNALEHEADIAKVQLWLGHANISTTKIY 120 >gi|321271492|gb|ADW79581.1| putative site-specific recombinase [Escherichia coli] gi|332346551|gb|AEE59883.1| putative site-specific recombinase [Escherichia coli UMNK88] Length = 262 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 57/228 (25%), Positives = 97/228 (42%), Gaps = 52/228 (22%) Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHT-------SHETKWI-----DARNSAILYLLYGC 166 L +LP A++ AL L ++H + E + D R +L L+ Sbjct: 14 LTPPATLPVAIDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVPDLRRKMLLATLWNT 73 Query: 167 GLRISEAL-------SLTPQNIMDDQSTL------------RIQGKGDKIRIVPLLPSVR 207 G RI+EAL SLTP +TL R+ R+VPL + Sbjct: 74 GARINEALALTRGDFSLTPPYPFVQLATLKQRTEKAARTAGRMPAGQQTHRLVPLSDAWY 133 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG---------- 255 + L+ + +++P+ R + G+ +++ R +R ++G Sbjct: 134 VSQLQ-------TMVATLKIPMERRNKRTGRTEKARIWEVTDRTVRTWIGEAVAAAAADG 186 Query: 256 --LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 187 VTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 234 >gi|295092319|emb|CBK78426.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum K10] gi|295114672|emb|CBL35519.1| Site-specific recombinase XerD [butyrate-producing bacterium SM4/1] Length = 281 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 9/150 (6%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213 +R S IL L G+RISE + +T + + ++ + ++GK R+V +LP + +E Sbjct: 125 SRLSLILQTLGATGIRISELVCITREAVSSGRAAVNLKGK---TRVV-ILPKRLREKMEI 180 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATH 272 Y C N P+F GKP++ ++ L + G+ H LRH FA Sbjct: 181 Y--C--RENQIYSGPVFVTRGGKPVDRSNIWSEMKILCKTAGINEKKIFPHNLRHLFARI 236 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 N D+ + ILGH + TT+IYT+++ Sbjct: 237 YYKNNHDIVYLADILGHSSVETTRIYTSIS 266 >gi|253565255|ref|ZP_04842710.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|251945534|gb|EES85941.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] Length = 182 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 71/144 (49%), Gaps = 16/144 (11%) Query: 167 GLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYDLCPFDLN 222 GL S+ L+P++++ D++ L I+ K +I +P+LP + +Y D+ Sbjct: 33 GLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVAASILDKYKDVAECTGK 92 Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLR 281 L LP+ R Y++++ G+ + + HT RHS+AT + L+NG + Sbjct: 93 L---LPVLCNQR--------MNSYLKEIADVCGIHKNLSTHTARHSYATSICLANGVSME 141 Query: 282 SIQSILGHFRLSTTQIYTNVNSKN 305 ++ +LGH + T+ Y V +N Sbjct: 142 NVAKMLGHADTNVTKHYARVLDQN 165 >gi|116622058|ref|YP_824214.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116225220|gb|ABJ83929.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 406 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 61/255 (23%), Positives = 117/255 (45%), Gaps = 30/255 (11%) Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK-KRKITTE--SNILNMR 117 ++I + + ++ F+ + ++ R++ + S +++FL++L ++ T+ ++ +R Sbjct: 154 KSIARANLADVDGFV-QALAARLSKRTVADTCSSLRAFLRFLHMTGRLPTDLAGGVIALR 212 Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 + PR L V +L S T R+ AI+ LL GL +E L + Sbjct: 213 -YRIDERPPRCLPWSD----VQKILRGIS-RTAAPGKRDYAIVLLLATYGLGAAEVLGIR 266 Query: 178 PQNIMDDQSTLRIQGKGDKIRI-VPLLPSVRKAILEY--YDLCPF----DLNLNIQLPLF 230 +++ LR+ K+ I +PLLP+V +A+ Y ++ P + L +P Sbjct: 267 LEDVDWQGGVLRVCRPKTKVSIELPLLPAVAQALSAYLRWERPPARSVPHIFLRENMPY- 325 Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT----AHTLRHSFATHLLSNGGDLRSIQSI 286 +P+ G + IR Y GL +T AH R S A+ + +G +++ + I Sbjct: 326 -----EPITSGAIRHRIRY---YAGLAGISTKVIGAHAFRRSHASRQIDSGANVKVVSDI 377 Query: 287 LGHFRLSTTQIYTNV 301 LGH S+T +Y V Sbjct: 378 LGHRSSSSTSVYVRV 392 >gi|10955421|ref|NP_053133.1| resolvase [Escherichia coli] gi|190014958|ref|YP_001965470.1| Putative resolvase [Escherichia coli] gi|191174386|ref|ZP_03035890.1| resolvase [Escherichia coli F11] gi|215276275|ref|YP_002332238.1| putative resolvase [Escherichia coli O127:H6 str. E2348/69] gi|218511244|ref|YP_002415702.1| putative resolvase (Protein D) [Escherichia coli 55989] gi|218692932|ref|YP_002406044.1| Resolvase [Escherichia coli UMN026] gi|256026287|ref|ZP_05440152.1| resolvase (protein D) [Escherichia sp. 4_1_40B] gi|256855302|ref|YP_003162546.1| putative resolvase [Escherichia coli] gi|293404649|ref|ZP_06648642.1| resolvase [Escherichia coli FVEC1412] gi|300897136|ref|ZP_07115593.1| site-specific recombinase, phage integrase family [Escherichia coli MS 198-1] gi|6009447|dbj|BAA84906.1| Resolvase [Escherichia coli] gi|109389679|gb|ABG29598.1| Putative resolvase [Escherichia coli] gi|190905319|gb|EDV64954.1| resolvase [Escherichia coli F11] gi|215267871|emb|CAS07541.1| putative resolvase [Escherichia coli O127:H6 str. E2348/69] gi|218350095|emb|CAQ87514.1| Resolvase [Escherichia coli UMN026] gi|218359345|emb|CAU95831.1| putative resolvase (Protein D) [Escherichia coli 55989] gi|256275514|gb|ACU68787.1| putative resolvase [Escherichia coli] gi|281181668|dbj|BAI57997.1| resolvase [Escherichia coli SE15] gi|291428361|gb|EFF01387.1| resolvase [Escherichia coli FVEC1412] gi|300359078|gb|EFJ74948.1| site-specific recombinase, phage integrase family [Escherichia coli MS 198-1] gi|315290869|gb|EFU50238.1| site-specific recombinase, phage integrase family [Escherichia coli MS 153-1] gi|324005322|gb|EGB74541.1| site-specific recombinase, phage integrase family [Escherichia coli MS 57-2] gi|324015231|gb|EGB84450.1| site-specific recombinase, phage integrase family [Escherichia coli MS 60-1] Length = 269 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 40/182 (21%) Query: 153 DARNSAILYLLYGCGLRISEALSLT-------PQNIMDDQSTL--------RIQGK---G 194 D R +L L+ G RI+EAL+LT P +TL R G+ G Sbjct: 66 DLRRKMLLATLWNTGARINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAGRTPAG 125 Query: 195 DKI-RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLR 251 + R+VPL S + L+ + +++PL R + G+ +++ R +R Sbjct: 126 QQTHRLVPLSDSWYVSQLQ-------TMVATLKIPLERRNKRTGRTEKARIWEVTDRTVR 178 Query: 252 RYLG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 ++G + T HT RHS+A H+L G L+ +QS++GH +S+T++YT Sbjct: 179 TWIGEAVAAAATDGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYT 238 Query: 300 NV 301 V Sbjct: 239 KV 240 >gi|206579294|ref|YP_002238658.1| site-specific recombinase, phage integrase family [Klebsiella pneumoniae 342] gi|206568352|gb|ACI10128.1| site-specific recombinase, phage integrase family [Klebsiella pneumoniae 342] Length = 332 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 10/160 (6%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK---IRIVPLLPSVRKA 209 D R +L L Y CGLR E ++ +I Q L ++ + K R+VP P + Sbjct: 149 DIRTRFMLALAYDCGLRREELCTVATGDIDPSQRLLTVRAEHTKNRFGRVVPYSPVTGEL 208 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGI----RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + L + + + PLF R +P++ + + +R L PL +T HT Sbjct: 209 YTAW--LTERRMLSSSRGPLFLSRSPRNRAEPISNWTWSKVVRGLALKADFPLIST-HTF 265 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 RH T L G D+ I + GH R+ +T +Y ++++++ Sbjct: 266 RHLCLTELARVGWDIHEIAAFAGHRRIQSTLLYIHLSARD 305 >gi|159904504|ref|YP_001548166.1| integrase family protein [Methanococcus maripaludis C6] gi|159885997|gb|ABX00934.1| integrase family protein [Methanococcus maripaludis C6] Length = 324 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 68/298 (22%), Positives = 131/298 (43%), Gaps = 23/298 (7%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 +E+ +++ ER + + D + +FLAF E ++ + + + ++ Sbjct: 21 EEQNKYVKKFREEREFDNIKKTTILNDIVRLRVFLAFCEELEMEPFELSTHDFVKFFNYL 80 Query: 76 SKRRTQKIGDRSLKRSLSGIKSF---LKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 + RR I ++ + + +K F L+Y R+ ESN N + K + Sbjct: 81 TNRRNCSITTQN--KYFNLLKVFYRLLRYENFREFEIESN--NRKRFTKYEKKHYDTIDF 136 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 + T + ++ ++ TK R++ ++ +L+ G R SEAL++ ++ ++ RI+ Sbjct: 137 ETYTKILKEVVLSNSRTK---VRDALLIRVLWETGCRRSEALNIRYKDCDLEKGRFRIRD 193 Query: 193 -KGDKIRIVPLLPSVRKAILEYY------DLCPFDLNLNIQLPLFRGIRGKP-LNPGVFQ 244 K + R V + K +++Y D F + F G R KP VF+ Sbjct: 194 TKTYEERTVVVSEDTLKIVIDYIKQNLRRDADDFIFQNEVT---FNGKRVKPDWVTAVFK 250 Query: 245 RYIRQLRRYLGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + + +L+ +P H+LRH AT LL G + ++ ILGH L TT Y++ Sbjct: 251 KAVNKLKEDGAIPKGRRVVVHSLRHGRATDLLDKGVPIDIVKEILGHKSLETTLYYSH 308 >gi|227887411|ref|ZP_04005216.1| phage integrase family site-specific recombinase [Escherichia coli 83972] gi|300983731|ref|ZP_07176712.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 45-1] gi|301049115|ref|ZP_07196096.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 185-1] gi|227835761|gb|EEJ46227.1| phage integrase family site-specific recombinase [Escherichia coli 83972] gi|300299061|gb|EFJ55446.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 185-1] gi|300408460|gb|EFJ91998.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 45-1] gi|315292311|gb|EFU51663.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 153-1] Length = 179 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 66/157 (42%), Gaps = 21/157 (13%) Query: 159 ILYLLYGCGLRISEALSLT------------PQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 ++ L Y GLR+SE LSL Q I + ST+ K + I I L Sbjct: 1 MILLAYFHGLRVSELLSLQLSDLELTTEKIYIQRIKNGFSTVHPLQKEEVIAITNWLNER 60 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 +++++ P+ LF GKPL+ F + + GL + H LR Sbjct: 61 NSLNVKHFNDNPW---------LFVSRTGKPLSRQRFYNIVSAAGKNAGLNIKVHPHMLR 111 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 H+ L NG D R IQ LGH + T IYT NS Sbjct: 112 HACGYSLADNGVDTRLIQDYLGHRNIRHTVIYTASNS 148 >gi|256826767|ref|YP_003150726.1| site-specific recombinase XerD [Cryptobacterium curtum DSM 15641] gi|256582910|gb|ACU94044.1| site-specific recombinase XerD [Cryptobacterium curtum DSM 15641] Length = 307 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 70/149 (46%), Gaps = 18/149 (12%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEY 213 ++ L+ GLR SEAL L P + T+ + D R +P SVRK L++ Sbjct: 140 LILLIAKTGLRFSEALGLMPADFDFTHQTVSVNKTWDYKRNGGFVPTKNVSSVRKVQLDW 199 Query: 214 ---YDLCPFDLNLNIQLPLFRGIRGKPLNP---GVFQRYIRQLRRYLGLPLSTTAHTLRH 267 L L + P+F + GK N GV R+ ++ G+P+ T H LRH Sbjct: 200 QLVMQLAGLLKELPAEKPIF--VDGKVYNSTANGVLARHCKRA----GVPV-ITIHGLRH 252 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + A+ LL G + S+ LGH ++TTQ Sbjct: 253 THASLLLFAGVSIASVSRRLGHASMTTTQ 281 >gi|116006838|ref|YP_788021.1| resolvase (protein D) [Escherichia coli] gi|115500693|dbj|BAF33924.1| resolvase (protein D) [Escherichia coli] Length = 278 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 40/182 (21%) Query: 153 DARNSAILYLLYGCGLRISEALSLT-------PQNIMDDQSTL--------RIQGK---G 194 D R +L L+ G RI+EAL+LT P +TL R G+ G Sbjct: 66 DLRRKMLLATLWNTGARINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAGRTPAG 125 Query: 195 DKI-RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLR 251 + R+VPL S + L+ + +++PL R + G+ +++ R +R Sbjct: 126 QQTHRLVPLSDSWYVSQLQ-------TMVATLKIPLERRNKRTGRTEKARIWEVTDRTVR 178 Query: 252 RYLG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 ++G + T HT RHS+A H+L G L+ +QS++GH +S+T++YT Sbjct: 179 TWIGEAVAAAATDGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYT 238 Query: 300 NV 301 V Sbjct: 239 KV 240 >gi|19848931|gb|AAL93615.1| integrase [Streptococcus thermophilus] gi|312278498|gb|ADQ63155.1| Integrase [Streptococcus thermophilus ND03] Length = 359 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 71/143 (49%), Gaps = 7/143 (4%) Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219 LY++ G+R +E L LT +I D L + D +P+ K+ + L Sbjct: 193 LYIIAKTGIRFAECLGLTVDDIKRDTGMLSVNKTWDYKNNTGFMPTKTKSSIREIPLDDE 252 Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278 +N Q+P R L P + + + LR+ +G + H+LRH++A++L+++ Sbjct: 253 FINFIDQMPPTDDGR---LLPSLSNNAVNKTLRKIVGREVR--VHSLRHTYASYLIAHDI 307 Query: 279 DLRSIQSILGHFRLSTT-QIYTN 300 DL S+ +LGH L+ T ++Y + Sbjct: 308 DLISVSQVLGHENLNITLEVYAH 330 >gi|67077907|ref|YP_245527.1| site-specific tyrosine recombinase XerS [Bacillus cereus E33L] gi|66970213|gb|AAY60189.1| tyrosine recombinase [Bacillus cereus E33L] Length = 358 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 69/304 (22%), Positives = 126/304 (41%), Gaps = 42/304 (13%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK---------RRTQKIGD 85 TL +Y D R F +L +E+ I ++ I+ +S++++ K + Q + + Sbjct: 43 TLLNYVYDFRVFFKWLL--SEQIIELKPIKDISFSDLENLKKKDVENFMRFLKLQQNMQN 100 Query: 86 RSLKRSLSGIKSFLKYL------------------KKRKITTESNILNMRNLKKSNSLPR 127 S+ R +S +KS KYL K +I + LN R + + + Sbjct: 101 SSVNRKISALKSLFKYLTSLSENEDGECYFYRNVMAKIEIHKDKETLNARAKRMRSKIFH 160 Query: 128 ALNEKQALTLV--DNVLLHTSHETKWI---DARNSAILYLLYGCGLRISEALSLTPQNIM 182 ++++ L V ++ T H+ + R+ AIL L G G+R+SE L ++I Sbjct: 161 NDDDQEFLNYVKYEHEKSLTKHQLFYFLRDKDRDVAILSLFLGSGIRVSELADLRMEDIN 220 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKP 237 + + + KG+K V + P + +Y + P N+ L ++ +P Sbjct: 221 LKERLIDVIRKGNKEDSVWITPIALNDLEKYMGIRDNKYAPGKELKNVFLSKYKHT-AQP 279 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L+ Q + + + G +S H LRH+ A L D + LGH T + Sbjct: 280 LSVRAIQDIVEKYTKAYGKKMS--PHKLRHTLANKLYMEEKDSLQVMQQLGHTSQDTALL 337 Query: 298 YTNV 301 YT + Sbjct: 338 YTQL 341 >gi|331646987|ref|ZP_08348086.1| resolvase (Protein D) [Escherichia coli M605] gi|331044304|gb|EGI16435.1| resolvase (Protein D) [Escherichia coli M605] Length = 260 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 57/220 (25%), Positives = 93/220 (42%), Gaps = 48/220 (21%) Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL------------LYGCGLRISE 172 LP A++ AL L + H + + SA+L+ L+ G RI+E Sbjct: 18 LPVAIDYPAALALRQMAMQHDDYPKYLLAPEVSALLHYVPDLHRRMLLATLWNTGARINE 77 Query: 173 ALSLT-------PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN--- 222 AL+LT P +TL+ Q R +PS + + L P N Sbjct: 78 ALALTRGDFSLAPPYPFVQLATLK-QRAEKAARTAGRMPSGSQP----HRLVPLSDNQYV 132 Query: 223 -------LNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG------------LPLSTT 261 +++PL R R G+ +++ R +R ++G + T Sbjct: 133 SELQMMVATLKIPLERRNRRTGRTEKARLWEITDRTVRTWIGEAVEAAAADGVTFSVPVT 192 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 193 PHTFRHSYAMHMLYAGIPLKVLQSLMGHKSVSSTEVYTKV 232 >gi|296162870|ref|ZP_06845651.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295886907|gb|EFG66744.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 417 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 75/155 (48%), Gaps = 8/155 (5%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEY 213 R AI+ GLR E L+ +I TL ++ KG + ++PL + +AI Y Sbjct: 254 RADAIVRCALDLGLRSGEIARLSLDDIDWQAGTLVLRHTKGRREDMLPLPATTGEAIAAY 313 Query: 214 YDLC-PFDLNLNIQLPLFRGI--RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 + P N I R I R +P + ++ IRQ GLP T +H LRH+ A Sbjct: 314 LEQERPKTSNRAI---FVRHIAPRDQPAGTDLVRKTIRQAFTRAGLPY-TRSHLLRHTMA 369 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 LL++G L+ + +L H L+TT IY ++S+ Sbjct: 370 NRLLASGSSLKEVADVLRHRSLNTTLIYAKLDSRK 404 >gi|293416320|ref|ZP_06658959.1| resolvase [Escherichia coli B185] gi|291431676|gb|EFF04659.1| resolvase [Escherichia coli B185] Length = 268 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 56/224 (25%), Positives = 97/224 (43%), Gaps = 48/224 (21%) Query: 121 KSNSLPRALNEKQALTLVDNVLLHT-------SHETKWI-----DARNSAILYLLYGCGL 168 + SLP A++ AL L ++H + E + D R +L L+ G Sbjct: 22 QPASLPVAIDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVPDLRRKMLLATLWNTGA 81 Query: 169 RISEALSLT-------PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD- 220 RI+EAL+LT P +TL+ Q R P+ ++A + L P Sbjct: 82 RINEALALTRGDFSLAPPYPFVQLATLK-QRTEKAARTAGRTPAGQQA----HRLVPLSD 136 Query: 221 ---------LNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG------------LP 257 + +++P+ R + G+ +++ R +R ++G Sbjct: 137 SWYVSQLQTMVATLKIPMERRNKRTGRTEKARIWEVTDRTVRTWIGEAVAAAAADGVTFS 196 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 197 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240 >gi|187922252|ref|YP_001893894.1| integrase family protein [Burkholderia phytofirmans PsJN] gi|187713446|gb|ACD14670.1| integrase family protein [Burkholderia phytofirmans PsJN] Length = 408 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 74/309 (23%), Positives = 125/309 (40%), Gaps = 23/309 (7%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI 63 ++ ++ +++ E W+ + RGLS T Q + R L +L + + T+ Sbjct: 102 DSAEDVAIHQVVAEYDAWMTEV---RGLSAGTRQHNRFEARSLLRWLDDHGKNLTTVNVA 158 Query: 64 RQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 +Y R +RRT+ ++ +L G+ +L + I S + + Sbjct: 159 DLDAYIASRVASMRRRTKG----TMVGTLRGVLRYLHSSGRMSIDL-SVAIEATSAYAME 213 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 +P + + +D VL + + R+ A+L LL GLR E L + ++ Sbjct: 214 DIPSTIRPED----IDWVLDIVRRDCSPLGRRDYALLTLLTTYGLRAGEVLGMCLSDVDW 269 Query: 184 DQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-- 240 + LRIQ K +PL+ A+L+Y LC +L RG P P Sbjct: 270 HRERLRIQHTKTGSCSELPLMRLPADALLDY--LCHGRPVTTQRLIFLRG--RAPYQPLS 325 Query: 241 --GVFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 I + R G LP H LRHS A LLS G ++ I +LGH +T Sbjct: 326 GSAALHSMISRRFRAAGVSLPGKRGPHVLRHSRAASLLSGGVSIKVIGDVLGHRSERSTA 385 Query: 297 IYTNVNSKN 305 +Y + + + Sbjct: 386 VYLKLATDD 394 >gi|297566000|ref|YP_003684972.1| integrase family protein [Meiothermus silvanus DSM 9946] gi|296850449|gb|ADH63464.1| integrase family protein [Meiothermus silvanus DSM 9946] Length = 385 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 25/188 (13%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI------QGKGDKI--------- 197 D R + L L+ CGLR EAL L Q++ TL + GK + Sbjct: 198 DPRTALALRLMLACGLRRGEALGLQWQDLDLGAGTLTVTRAWTDDGKRGVLTLPKTHTSG 257 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRG-IRGKPLNPGVFQRYIRQLRRY 253 R VP+ + + + +Y + L P +F G KPLNP ++++ Sbjct: 258 RTVPIPHATLERLQQYRAW--YAERLGDPRPEAWVFPGNDPSKPLNPHAPNWALKRITER 315 Query: 254 LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMM 311 LG+ PL H LRHS+ +H+L+NG L + +GH + T +Y +V W++ Sbjct: 316 LGIGPLRV--HDLRHSYGSHMLANGAPLELVSERMGHANANITLGVYRHVLEHERKGWII 373 Query: 312 EIYDQTHP 319 + D P Sbjct: 374 DPEDLLGP 381 >gi|170756250|ref|YP_001782987.1| phage integrase family site specific recombinase [Clostridium botulinum B1 str. Okra] gi|169121462|gb|ACA45298.1| site-specific recombinase, phage integrase family [Clostridium botulinum B1 str. Okra] Length = 199 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 45/196 (22%), Positives = 91/196 (46%), Gaps = 12/196 (6%) Query: 122 SNSLPRALNEKQALTLVDNVLL-HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 SN+ + L +++A+ L + ++ SH R+ A+ + Y CGLR SE + + Sbjct: 5 SNNKMKYLTQQEAIRLFNAIIFSDNSHA-----VRDLALFRVAYRCGLRASEISLIKLDD 59 Query: 181 IMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239 D+ L + KG + L + +K + Y + + ++ N + LF+ + P++ Sbjct: 60 YNADKGDLYCKRLKGSNNNTIRLDVTTKKTLDAY--IRDYKISCNSE-TLFKSQKNNPIS 116 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAH--TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 +++ + + + H TL+H+ A HL + D++ +Q LGH +S T+I Sbjct: 117 RQTLDYLMKKYCKIANISDKSKHHFHTLKHTTAVHLAESEMDIKELQWWLGHKSVSNTEI 176 Query: 298 YTNVNSKNGGDWMMEI 313 Y +K M++ Sbjct: 177 YFQFTTKQQEKMYMKL 192 >gi|85059870|ref|YP_455572.1| phage integrase [Sodalis glossinidius str. 'morsitans'] gi|84780390|dbj|BAE75167.1| phage integrase [Sodalis glossinidius str. 'morsitans'] Length = 329 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%) Query: 245 RYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 RY+R + + LP H LRH+FA+H + NGG++ ++Q ILGH + T +Y + Sbjct: 250 RYVRDCIKEIAPNLPAGQAVHVLRHTFASHFMMNGGNILALQRILGHSSILQTMVYAH 307 >gi|325270645|ref|ZP_08137243.1| integrase [Prevotella multiformis DSM 16608] gi|324987040|gb|EGC19025.1| integrase [Prevotella multiformis DSM 16608] Length = 447 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 79/321 (24%), Positives = 139/321 (43%), Gaps = 57/321 (17%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 + + I+R L L++Y+ L L Y ++K + I LS + ++FI Sbjct: 164 ERIGIDRELKTFKLRTYQ------LSLLHEYVQKKHRVSDI-PLSQLD-KSFIEGFEYYL 215 Query: 83 IGDRSLKRS-----LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 DR LKRS LS +++ ++ K+ + + ++ PR + + + + Sbjct: 216 TIDRKLKRSSISSALSTLQTIVRMAVKKGVPDFYPFFGY-SYERPKGEPRCITQDELQKI 274 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGD 195 +D E +W + R L++ + C GL IS+ +L +NI+ ++ L I+G+ Sbjct: 275 ID-------LEIEWENYRIVRDLFV-FSCFTGLAISDVRNLREENIVLEEGELCIKGRRM 326 Query: 196 KIRI---VPLLPSVRKAILEY--------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 K + V +LP + Y +D+ D+ LN G+ N G Sbjct: 327 KTKTPYRVQVLPPALTIMNRYRGIRAGFVFDVPTIDIVLN-------GMHYIQRNIG--- 376 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 +G PL T H RH+FA+ + LS G + ++ +LGH L TTQ+Y V+S Sbjct: 377 ---------MGTPL--TFHMARHTFASIITLSAGVPIETVSRMLGHTNLRTTQVYAAVSS 425 Query: 304 KNGGDWMMEIYDQTHPSITQK 324 + M I + + T K Sbjct: 426 ERIHRDMQAIQQRIQDTFTLK 446 >gi|124008731|ref|ZP_01693421.1| transposase, putative [Microscilla marina ATCC 23134] gi|123985807|gb|EAY25680.1| transposase, putative [Microscilla marina ATCC 23134] Length = 428 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 34/145 (23%), Positives = 71/145 (48%), Gaps = 14/145 (9%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQS---TLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 ++ C GL S+ + L P+++++ ++ + K + +PLLP K +L+ Y Sbjct: 275 FVFQCFTGLAFSDIVDLKPEHLIEQGERTWIIKERVKSSTVAKMPLLPQA-KFVLDKYKD 333 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 P L+ + +P+ + G + Y+R + +G+ T+H R +FAT + + Sbjct: 334 DPVCLSKGVLIPV--------ITSGNYNTYLRMIAECVGIDKHLTSHVGRRTFATLVYNA 385 Query: 277 GGDLRSIQSILGHFRLSTTQIYTNV 301 G D ++ + GH + T+IY ++ Sbjct: 386 GTDRSKLKEMTGHTNEAITEIYASL 410 >gi|296185025|ref|ZP_06853435.1| site-specific recombinase, phage integrase family [Clostridium carboxidivorans P7] gi|296049859|gb|EFG89283.1| site-specific recombinase, phage integrase family [Clostridium carboxidivorans P7] Length = 199 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 12/156 (7%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL---RIQGKGDK-IRIVPLLPSVRKAI 210 R+ AI + Y CGLR SE + ++ + L R++G + IR+ SV Sbjct: 34 RDLAIFRVAYRCGLRASEIALIKLEDYNASKGELYCKRLKGSSNNTIRLDIKTKSVLDKY 93 Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH--TLRHS 268 + Y + L+ PLF + KP++ I++ + T H +L+H+ Sbjct: 94 IAKYRI------LSESSPLFVSQQNKPISRQTLDYLIKKYCSLANISDKTKYHFHSLKHT 147 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 A HL +G D++ +Q LGH +S T+IY +K Sbjct: 148 TAVHLAESGMDIKELQWWLGHKSVSNTEIYFQFTTK 183 >gi|295841228|dbj|BAJ07009.1| integrase [uncultured bacterium] Length = 408 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 69/275 (25%), Positives = 109/275 (39%), Gaps = 73/275 (26%) Query: 62 TIRQLSYTEIRAFISKRRTQKIGDRSLKRSL---SGIKSFLKYL---KKRKITTESNILN 115 IRQ SY A++S + + R R G+K+FL+YL +K T+ LN Sbjct: 145 CIRQYSYRTAEAYVSWVKKYFLFHRQRPREALTPDGVKAFLEYLVLVRKVAAGTQKQALN 204 Query: 116 MRNL-------------------KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARN 156 + K+ +LP L+ + ++ +D Sbjct: 205 ALDFFFGEVLGLELGDLGDFARSKRPKNLPVVLSRDETERVLGA-----------LDGTT 253 Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVP--LLPSVRKAIL 211 + LLYG GLR+ EAL L +++ D S +++ +GK D+I ++P L ++ ++ Sbjct: 254 ALAAGLLYGSGLRLMEALRLRVKDVDFDCSQIQVRDGKGKRDRITVLPERYLEPLKAHLV 313 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGK--PLNPGVF-QRYI-------------RQLRRYL- 254 + DL N F G+ P P + +YI R +R +L Sbjct: 314 RVKAVHESDLGQNYAGTTFWPSLGRKYPYAPRQWIWQYIFPSSRLAVDPQTGRSIRHHLH 373 Query: 255 ---------------GLPLSTTAHTLRHSFATHLL 274 G+ T HTLRHSFATHLL Sbjct: 374 ETVLQRAVKAAAARAGISKRVTCHTLRHSFATHLL 408 >gi|158320580|ref|YP_001513087.1| integrase family protein [Alkaliphilus oremlandii OhILAs] gi|158140779|gb|ABW19091.1| integrase family protein [Alkaliphilus oremlandii OhILAs] Length = 405 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 62/234 (26%), Positives = 105/234 (44%), Gaps = 23/234 (9%) Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN----EKQALTL--V 138 +R+L R S + K+L + +I E+ ++ P A+ ++ AL L V Sbjct: 157 NRALGRKKSSLSVLFKFLYRDEIVKENITDGFNPIRLPKQEPDAIKRLEIDEVALMLDAV 216 Query: 139 DNVLLHTSHETKWIDA---RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 D+ T E K+ + R+ AIL L GLR+SE L + ++ RI K Sbjct: 217 DSGEHFTESEKKYWEKTKLRDKAILVLFVTYGLRLSELEQLNLSSFNFNRGEFRIYRKRG 276 Query: 196 KIRIVPLLPSVRKAILEYYD---LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-R 251 K ++P+ + I +Y + L+ + LF ++ K + R IR L + Sbjct: 277 KEVLMPINKTCEIVIKDYVENERTSSELLDDENKDALFLSLQNKRMTT----RAIRNLVK 332 Query: 252 RYLGLPLSTTA------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 +Y + L TT H LR + AT L+ G + +Q++L H ++TTQ+Y Sbjct: 333 KYTAIVLGTTKENGYSPHKLRATAATSLIQQGFSIYDVQNLLDHDNVTTTQLYA 386 >gi|94264589|ref|ZP_01288374.1| Phage integrase [delta proteobacterium MLMS-1] gi|93455007|gb|EAT05241.1| Phage integrase [delta proteobacterium MLMS-1] Length = 353 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 77/168 (45%), Gaps = 17/168 (10%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPF- 219 LLY G+RI EA +LT ++ + I +GK K R +PL PS +L Y P Sbjct: 152 LLYTTGIRIGEAFALTLKDFQQKHDLIYIAEGKFKKARWLPLHPST-SLMLNQYVAHPLR 210 Query: 220 -DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA----HTLRHSFATHLL 274 PLF +R L+ RQL + +T H LRH+FA H L Sbjct: 211 GGGTRTPDSPLFINLRAARLHHCTVHHAFRQLLEQSDIAHNTLPRPRIHDLRHTFAVHKL 270 Query: 275 ----SNGGDLRS----IQSILGHFRLSTTQIYTNVNSKNG-GDWMMEI 313 +GGD+ + + + +GH +++T+ TN N G G ++ EI Sbjct: 271 LAWYRDGGDVNARLPVLATYMGHVNITSTRQATNGNFAMGDGRFLDEI 318 >gi|306825473|ref|ZP_07458813.1| phage integrase family prophage LambdaSa2 [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432411|gb|EFM35387.1| phage integrase family prophage LambdaSa2 [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 281 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 28/164 (17%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD--------------KI 197 +D ++ A++YL+ G+R +E L LT N+ D L + + I Sbjct: 106 MDVQSYAVIYLIAVTGMRFAECLGLTWDNVDHDNKLLAVDKTWNYKTNLDFSATKTKSSI 165 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 R +PL K +L+ Y + N + +F I +N + LRR +G Sbjct: 166 RKIPLDDETLK-LLKIYQKEHWIHNK--ENRIFSNISNNAVN--------KTLRRIVGRN 214 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTN 300 + AH+LRH++A+ L+S +L SI ILGH ++ T ++Y + Sbjct: 215 IH--AHSLRHTYASFLISQRVELLSISKILGHENMNITIEVYAH 256 >gi|254495557|ref|ZP_05108480.1| Phage integrase [Legionella drancourtii LLAP12] gi|254355240|gb|EET13852.1| Phage integrase [Legionella drancourtii LLAP12] Length = 229 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 56/211 (26%), Positives = 95/211 (45%), Gaps = 20/211 (9%) Query: 105 RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLY 164 RK+ +++ + +K NSL RA E T +D +++ + T R++ ++ L Y Sbjct: 31 RKVCYTRSMMPPKKIK--NSLLRA-REYLTPTEIDKLIV-AARRTGRHGKRDATMILLAY 86 Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILEYYDLCPFDLNL 223 GLR+SE +SL I +Q + + + + PL + +A+ + L Sbjct: 87 RHGLRVSELISLCWTQIDLEQGVFHVIRRKNGLSTHHPLFGAELRALRQ----------L 136 Query: 224 NIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279 P +F R P+ F++ + + L LS H LRHS L ++G D Sbjct: 137 KRDYPETDYVFMTERKAPITGDTFRKIVARAGEVAKLGLSVHPHMLRHSTGYKLANDGRD 196 Query: 280 LRSIQSILGHFRLSTTQIYTNVNS-KNGGDW 309 RSIQ LGH + T YT +++ + G W Sbjct: 197 TRSIQHYLGHKNIQNTVRYTEMSATRFKGFW 227 >gi|212695232|ref|ZP_03303360.1| hypothetical protein BACDOR_04770 [Bacteroides dorei DSM 17855] gi|212662142|gb|EEB22716.1| hypothetical protein BACDOR_04770 [Bacteroides dorei DSM 17855] Length = 411 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 22/153 (14%) Query: 162 LLYGC--GLRISEALSLTPQNIMDD----------QSTLRIQGKGDKIRIVPLLPSVRKA 209 ++ C GL S+ SL +N++ D + L + K I +PLLP V A Sbjct: 250 FVFACFTGLAFSDVASLNKENLVQDNLGDWWIRKGRVKLEHRRKASSISNIPLLP-VPLA 308 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 ILE Y P + LP+ + Y++++ + G+ + T H RH+F Sbjct: 309 ILEKYKEHPTCIKKGCCLPVMCNQK--------MNSYLKEIADFCGIKKNLTTHVARHTF 360 Query: 270 ATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T + L+N L+ + +LGH TQ Y V Sbjct: 361 GTTVTLANNVPLQDVSVMLGHASTRMTQHYARV 393 >gi|150395893|ref|YP_001326360.1| phage integrase family protein [Sinorhizobium medicae WSM419] gi|150027408|gb|ABR59525.1| phage integrase family protein [Sinorhizobium medicae WSM419] Length = 343 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 69/158 (43%), Gaps = 18/158 (11%) Query: 152 IDARNSAILYL---LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 I +R+ LYL L G R+ EA+ L +I + ++T + G + R VPL + Sbjct: 187 IASRSELYLYLSIFLVDTGARLGEAIDLKWNDIHEGRATFWVTKSG-RSRTVPLTLRAKD 245 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 A+ + D P + I FR I ++ G LG H LRH Sbjct: 246 ALKKVADRSPGPFS-RIDQQKFRAIWNAAKVDAG------------LGDEEDIVPHILRH 292 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + A+ L+ G DLR +Q LGH L T Y ++ S + Sbjct: 293 TCASRLVRGGIDLRRVQMWLGHQTLEMTMRYAHLASHD 330 >gi|2078344|gb|AAB54012.1| transposase-like [Mycobacterium gordonae] Length = 369 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 52/211 (24%), Positives = 91/211 (43%), Gaps = 26/211 (12%) Query: 93 SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152 G + FL ++ K + I LK LPR L + ++D Sbjct: 144 GGWRPFLHHISKGTPRSRRVI----ALKTPKKLPRVLAPNEVQAILDGCG---------- 189 Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLR-------IQGKGDKIRIVPLL 203 R+ + +LY G+RI EAL L +I +++ T+R + K R +P+ Sbjct: 190 RLRDRLLFAVLYDTGMRIGEALGLRHNDIAAAENEVTVRRRDNANGARAKSQTDRTIPVS 249 Query: 204 PSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 ++ + + DL+ + + + L+ +G PL G +R+LRR G+ Sbjct: 250 SALIRLWPTTFTASYGDLDSDYVFVNLWGRPQGYPLTYGAVYDLVRRLRRRTGIDFDP-- 307 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 H LRH+ AT LL +G + + +LGH ++ Sbjct: 308 HWLRHTAATRLLRDGVSIEVVAHLLGHAHVA 338 >gi|314935048|ref|ZP_07842407.1| prophage L54a, integrase [Staphylococcus caprae C87] gi|313652978|gb|EFS16741.1| prophage L54a, integrase [Staphylococcus caprae C87] Length = 405 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 70/285 (24%), Positives = 123/285 (43%), Gaps = 39/285 (13%) Query: 63 IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLKK 121 ++ ++ ++ I+ T+ + + +K LS IK+ ++Y +K+ IT S I ++ KK Sbjct: 114 VQNMNADVLQDLINSSLTEGLSHKVVKDDLSIIKNIIRYTQKKYNITDISYIDDVIVPKK 173 Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL----LYGC---------GL 168 + ++ +++ ++ V L + E K I A N Y+ L+ G+ Sbjct: 174 ATTIEEVKAKRENYLEMNEVHL-IAEELKRI-ANNKRASYMKRSYLFTAYIIEFQVLNGM 231 Query: 169 RISEALSLTPQNIMDDQSTLRIQGK------------------GDKIRIVPLLPS----V 206 RI E L++ P+NI L I G R + L + Sbjct: 232 RIGELLAIQPENIDFKNKKLIIDGTIHWRKERNNVGFKDTTKTASSYRTISLTTRSCDIL 291 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 RK +LE ++ + +F RG PL+ R I+ + +G+ T+HT+R Sbjct: 292 RKVMLENKKAVQWEKMYVDRDFIFTNHRGNPLSLTSINRNIQIAAKNVGIEKHITSHTMR 351 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310 HS + L G LR+I +GH TT QIY++V + D M Sbjct: 352 HSHISLLSQLGISLRAIMDRVGHTDHKTTLQIYSHVTEQMDKDMM 396 >gi|229021527|ref|ZP_04178126.1| Phage integrase [Bacillus cereus AH1273] gi|229027280|ref|ZP_04183546.1| Phage integrase [Bacillus cereus AH1272] gi|229035259|ref|ZP_04189194.1| Phage integrase [Bacillus cereus AH1271] gi|228728071|gb|EEL79112.1| Phage integrase [Bacillus cereus AH1271] gi|228734016|gb|EEL84744.1| Phage integrase [Bacillus cereus AH1272] gi|228739760|gb|EEL90158.1| Phage integrase [Bacillus cereus AH1273] Length = 360 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 77/290 (26%), Positives = 124/290 (42%), Gaps = 47/290 (16%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 S+ T Q Y D FL ++ K I TI++LS+ ++ + + ++K +L++ Sbjct: 75 SERTKQQYLHDLSHFLRYI------KEAIGTIQELSHNDMEIYFYEL-SKKYAATTLRKK 127 Query: 92 LSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 + ++ FLKY+ ++ S+ L ++KK + R L ++ ++D E Sbjct: 128 KTVVQQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLYPEEVTQILD--------EL 179 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIVPLLPS 205 K + +LL GLRI E + N++ S LR+ GKG+K R V + Sbjct: 180 KKSNYFVYTAFFLLTTTGLRIEEIATAKWANLVFHSSLNAYLLRVVGKGNKSREVRIFED 239 Query: 206 VRKAILEYYDL----CPFDL-NLNIQLPLFRG--IRGKPLNPGV----------FQRYIR 248 A+ L D N + LP G R L+ V F RY R Sbjct: 240 TLDALCHVRSLRKQTTKLDASNTSAFLPKADGSNYRADYLSSLVAKKIEETNLTFLRY-R 298 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 Q R T HT RH A +L+ G +L+ I+ LGH + TT+ Y Sbjct: 299 QDR--------ITPHTCRHFMANYLMEKGIELKKIRDYLGHESIMTTERY 340 >gi|157168021|gb|ABV25530.1| IntI1 [Klebsiella pneumoniae] Length = 300 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 71/162 (43%), Gaps = 37/162 (22%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207 LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198 Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 +A + F + + P +R + FQ Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286 R ++ G+ T HTLRHSFAT LL +G D+R++Q + Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDL 300 >gi|307826179|ref|ZP_07656390.1| integrase family protein [Methylobacter tundripaludum SV96] gi|307732818|gb|EFO03684.1| integrase family protein [Methylobacter tundripaludum SV96] Length = 328 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 2/68 (2%) Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 G F+R + R + L +H LRHSFA+H + NGG++ ++Q ILGH +S T Y + Sbjct: 255 GAFRRAV--TRSEIELQKGQNSHVLRHSFASHFIMNGGNILTLQKILGHADISQTMTYAH 312 Query: 301 VNSKNGGD 308 + ++ D Sbjct: 313 LAPEHLAD 320 >gi|158341027|ref|YP_001522194.1| phage integrase [Acaryochloris marina MBIC11017] gi|158311268|gb|ABW32880.1| phage integrase [Acaryochloris marina MBIC11017] Length = 351 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 12/186 (6%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS-YTEIRAFISKRRTQKIGDRS 87 R +S T ++YE D +QF+ +T++ + R L Y +R Q + + Sbjct: 48 REISSNTRKAYERDLKQFMD----WTDKGWHEISARDLDRYKNHLKVEPNQRGQLRKNAT 103 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 + R+L+ ++SF K+L R T+ L + LK LP+ ++ + L + H Sbjct: 104 INRNLAALQSFFKWLTVRDYITKDPTLLLEKLKADPVLPQEFSQDEVDNLYQAICDRGFH 163 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207 R+ A+L+L+ GLR SE L + + +R+ K D + VPLL R Sbjct: 164 TF-----RDRALLHLI-DHGLRASEIHRLNVGDYDGQRIIIRV-AKADSVGTVPLLKKAR 216 Query: 208 KAILEY 213 KAI +Y Sbjct: 217 KAIDQY 222 >gi|291009717|ref|ZP_06567690.1| phage integrase family site specific recombinase [Saccharopolyspora erythraea NRRL 2338] Length = 237 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 5/149 (3%) Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 +L T + + D R+ AI+ L YG G R++E +LT ++ ++ QGKG K R V Sbjct: 60 ILDTCNGKTFTDLRDQAIIRLYYGTGARLAEVANLTTDDLDMATDSVVYQGKGGKSRRVR 119 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLS 259 P +A+ Y L + +P L+ RG +PL + +++ ++ G+ Sbjct: 120 FGPKTARALSRY--LRARSRHRAADVPSLWLAARGAQPLQANGIKIMLKRRGKHAGVS-G 176 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILG 288 AH RH++A GGD + +LG Sbjct: 177 VHAHRWRHNYAHAWKLAGGDTGDLMLLLG 205 >gi|255527691|ref|ZP_05394548.1| integrase family protein [Clostridium carboxidivorans P7] gi|255508604|gb|EET84987.1| integrase family protein [Clostridium carboxidivorans P7] Length = 215 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 12/156 (7%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL---RIQGKGDK-IRIVPLLPSVRKAI 210 R+ AI + Y CGLR SE + ++ + L R++G + IR+ SV Sbjct: 50 RDLAIFRVAYRCGLRASEIALIKLEDYNASKGELYCKRLKGSSNNTIRLDIKTKSVLDKY 109 Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH--TLRHS 268 + Y + L+ PLF + KP++ I++ + T H +L+H+ Sbjct: 110 IAKYRI------LSESSPLFVSQQNKPISRQTLDYLIKKYCSLANISDKTKYHFHSLKHT 163 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 A HL +G D++ +Q LGH +S T+IY +K Sbjct: 164 TAVHLAESGMDIKELQWWLGHKSVSNTEIYFQFTTK 199 >gi|150003228|ref|YP_001297972.1| transposase [Bacteroides vulgatus ATCC 8482] gi|149931652|gb|ABR38350.1| transposase [Bacteroides vulgatus ATCC 8482] Length = 411 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 22/153 (14%) Query: 162 LLYGC--GLRISEALSLTPQNIMDD----------QSTLRIQGKGDKIRIVPLLPSVRKA 209 ++ C GL S+ SL +N++ D + L + K I +PLLP V A Sbjct: 250 FVFACFTGLAFSDVASLNKENLVQDNLGDWWIRKGRVKLEHRRKASSISNIPLLP-VPLA 308 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 ILE Y P + LP+ + Y++++ + G+ + T H RH+F Sbjct: 309 ILEKYKEHPTCIKKGCCLPVMCNQK--------MNSYLKEIADFCGIKKNLTTHVARHTF 360 Query: 270 ATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T + L+N L+ + +LGH TQ Y V Sbjct: 361 GTTVTLANNVPLQDVSVMLGHASTRMTQHYARV 393 >gi|46198973|ref|YP_004640.1| transposase [Thermus thermophilus HB27] gi|46196597|gb|AAS81013.1| transposase [Thermus thermophilus HB27] Length = 391 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 59/280 (21%), Positives = 117/280 (41%), Gaps = 35/280 (12%) Query: 63 IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKK 121 ++++ +RA + + R++ R L +K+ + + ++ + +R L K Sbjct: 120 LQEVKPVHVRAAVDRVAEAGYAPRTVNRVLMRLKALFREALRLELVARNPAEAVRLRLPK 179 Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 RAL + L++ S + + +L L+ GLR EAL+L ++I Sbjct: 180 GEKTARALEPHEVARLLEAAEASRSKDM-------ALLLRLMLETGLRRGEALALQWRDI 232 Query: 182 MDDQSTLRI-----QGKGDKIRIVPLLPSVRKAILEYYD---------------LCPFDL 221 + L + + G + P P+ ++ + L P ++ Sbjct: 233 DLEAGELTVWRSWTKAGGKGVFSEPKTPTAKRKVPLPRGLLLRLKARREELLERLTPEEV 292 Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281 + L L G+ KP++P F Y+R+L GL H LRH++AT LS G L Sbjct: 293 D---GLFLVGGV--KPVDPDAFNHYLRRLAEKAGLG-RVRVHDLRHTWATLALSRGVPLE 346 Query: 282 SIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQTHPS 320 + LGH + T +Y ++ + W++++ + +P+ Sbjct: 347 VVSERLGHASPTITLNVYRHLLEEERRGWVLDLEELLYPA 386 >gi|332884957|gb|EGK05211.1| hypothetical protein HMPREF9456_02975 [Dysgonomonas mossii DSM 22836] Length = 299 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 17/164 (10%) Query: 158 AILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPS---VRKAILEY 213 A+L LLY GLRI EAL++ +N+ ++ L + K RIVP+ S V + L+Y Sbjct: 112 ALLRLLYSTGLRIQEALTIKNENVSLEGHYILITKTKNRCERIVPICESMEVVLRQYLQY 171 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-----STTAHTLRHS 268 D P + LF G P ++ R + R +P+ H RH+ Sbjct: 172 RDRIPIKNIAASKSHLFVKPDGTPCKAVSVGKWFRMILRSSAIPIFGNRKGPRLHDFRHT 231 Query: 269 FAT----HLLSNGGDLRS----IQSILGHFRLSTTQIYTNVNSK 304 AT + +G D+ + + + LGH LS T+ Y + ++ Sbjct: 232 MATGSLVQMAHDGIDMYAAMPILSACLGHKSLSATEQYVRLTAE 275 >gi|325859512|ref|ZP_08172654.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325482980|gb|EGC85971.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 413 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 57/217 (26%), Positives = 97/217 (44%), Gaps = 15/217 (6%) Query: 95 IKSFLKYLKKRKITTESNI---LNMRNLKK--SNSLPRALNEKQALTLVDNVLLHTSHET 149 I++F+K+L +RK + + +N+ LK+ S +P +++ ++ ++ Sbjct: 178 IRAFMKFLCERKELQDCSYERWINLLRLKRPVSKKIPSVYTQEEVERIIASI-----DRI 232 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRK 208 I RN A++ L GLR + + + NI D + +R+ Q K DK +PL V Sbjct: 233 STIGKRNYAMILLCARYGLRAIDVVGMRFCNIDWDTNEIRVRQQKTDKEITLPLSEEVGC 292 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS---TTAHTL 265 A+++Y N G L+ GV + R G+ + T +H L Sbjct: 293 ALIDYIKNGRPSANTPYLFIKHSAPYG-ALSSGVMALNVSTYMRRAGIDSTGKRTGSHIL 351 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 RHS A++LL L I ILGH +T+ Y V+ Sbjct: 352 RHSLASNLLKANEQLPVISEILGHKSTESTKSYLKVD 388 >gi|300779338|ref|ZP_07089196.1| integrase [Chryseobacterium gleum ATCC 35910] gi|300504848|gb|EFK35988.1| integrase [Chryseobacterium gleum ATCC 35910] Length = 407 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 17/158 (10%) Query: 162 LLYGC--GLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYD 215 L+ C GL + LT QNI + + I K K + +P+L K I +Y + Sbjct: 249 FLFSCFTGLAYIDTQKLTYQNINLGLDGSQWIYTKRQKTKTTSNIPILSQTEKIIKKYKN 308 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274 P LN LP+ + + +N Y++++ G+ T H RH+FAT + L Sbjct: 309 H-PACLNSGKLLPI---LSNQKMNA-----YLKEIADLCGINKELTYHIARHTFATTVTL 359 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV-NSKNGGDWMM 311 SNG + S+ +LGH + TTQ Y + +SK D M+ Sbjct: 360 SNGVSIESVSKMLGHKSIKTTQHYAKILDSKVSEDMML 397 >gi|168262786|ref|ZP_02684759.1| phage integrase family protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205348507|gb|EDZ35138.1| phage integrase family protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 345 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 61/143 (42%), Gaps = 23/143 (16%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 I+ + G R EA L I + T I+ KG + R +PL P++ Sbjct: 201 IVRICLSTGARWGEAEKLKRSQIGAGKVTF-IKTKGKRNRTIPLDPAI------------ 247 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNG 277 +LP G+ P + + L R + LP H LRH+FA+H + NG Sbjct: 248 -----IAELPKKNGVLFSP----CYYAFRSALERAGIELPAGQLTHVLRHTFASHFMMNG 298 Query: 278 GDLRSIQSILGHFRLSTTQIYTN 300 G++ +Q ILGH + T Y + Sbjct: 299 GNILVLQKILGHTDIKMTMRYAH 321 >gi|30908736|gb|AAP37600.1| IntI [uncultured bacterium] Length = 160 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 34/53 (64%) Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 R ++Q + + HTLRHSFATHLL +G D+R++Q +LGH + TT I Sbjct: 105 RGVKQAAHAARIDKHVSCHTLRHSFATHLLEDGYDIRTVQELLGHSSVETTMI 157 >gi|51245456|ref|YP_065340.1| integrase/recombinase [Desulfotalea psychrophila LSv54] gi|50876493|emb|CAG36333.1| related to integrase/recombinase [Desulfotalea psychrophila LSv54] Length = 357 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 69/156 (44%), Gaps = 23/156 (14%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI-RIVPL-------LPSVRKAI 210 + LL G+R SE L P++I + +LRI I R VPL L +V Sbjct: 195 FVLLLMHTGMRSSEVARLRPEDINFETLSLRIHETKSGIPRSVPLTTKAAEVLQTVSPEA 254 Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-----GLPLSTTAHTL 265 YY L LN + IR P F R LR+ + +P H L Sbjct: 255 TGYYFLKENHLNQ-------KDIRLAPAK--AFSSCWRSLRKKMEASGHKIP-HFRPHDL 304 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 RH+ A+HLL G D+R + ILGH L+ T YT++ Sbjct: 305 RHTAASHLLMAGVDIREVADILGHSTLAMTMRYTHL 340 >gi|330503525|ref|YP_004380394.1| phage integrase family protein [Pseudomonas mendocina NK-01] gi|328917811|gb|AEB58642.1| phage integrase family protein [Pseudomonas mendocina NK-01] Length = 329 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 19/136 (13%) Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226 G R EA +LTP+ + + T K + R +P+ + KA+ Y+ L N Sbjct: 196 GARWGEAQALTPERVRNGMVTF-ANTKSKRTRSIPIDRELEKALQIYFKR--HGLFTNCM 252 Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286 L F R + + + LP H LRH+FA+H + GG++ ++Q I Sbjct: 253 L--------------TFSRVLDKT--SIKLPAGQATHVLRHTFASHFVMRGGNILTLQKI 296 Query: 287 LGHFRLSTTQIYTNVN 302 LGH L+ T Y +++ Sbjct: 297 LGHTSLAMTMRYAHLS 312 >gi|303237002|ref|ZP_07323575.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302482811|gb|EFL45833.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 421 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 62/185 (33%), Positives = 82/185 (44%), Gaps = 30/185 (16%) Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTL 188 E+ ALT D L + + +D N L L GC GL S+ L MDD TL Sbjct: 219 ERNALTSDDLHKLLSYRPHRSVD--NHCRLIFLLGCFTGLAFSDLKKLR----MDDVYTL 272 Query: 189 R--------IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240 + K IVPLLP + + D L LFR P N Sbjct: 273 DDGRRYISLCRTKTQNRSIVPLLPIAEEILTIVSDGQKEGL-------LFREF---PTN- 321 Query: 241 GVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQI 297 F R IR + GLP T T+HT RH+FAT + L NG + ++ +LGH +STT++ Sbjct: 322 SHFNRKIRDIIIKAGLPPHTEATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEL 381 Query: 298 YTNVN 302 Y V+ Sbjct: 382 YAKVS 386 >gi|187928823|ref|YP_001899310.1| integrase family protein [Ralstonia pickettii 12J] gi|187725713|gb|ACD26878.1| integrase family protein [Ralstonia pickettii 12J] Length = 559 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 71/303 (23%), Positives = 121/303 (39%), Gaps = 40/303 (13%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 +E +R LS LT + D + FL + + R S + R F T + Sbjct: 250 VERQRPLSSLTTE----DAVAYRAFLRRPMPRERWVGPPRPRSSPDWRPF-----TGALA 300 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 RS+ +LS + + ++L +++ + ++ + AL+ +A T + L+ Sbjct: 301 ARSVAHALSILGAMFRWLVEQRYVLANPFAGIK--VRGGGRTAALDNSRAFTDGEWKLVR 358 Query: 145 T-SHETKWIDARNSA-------ILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGK 193 T + +W +A +L Y GLR SE + T +I D L + GK Sbjct: 359 TIADGLEWSYGWEAAAAQRLRFVLDFAYATGLRPSELVGATLGDIWTDAQGDEWLELTGK 418 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR--GIRGKPLNPG--------VF 243 G + V + P R+A+ Y ++ + P R G G G V Sbjct: 419 GGRSGNVAMPPLARRAVERYLTERGLPISRRLWRPEVRLVGDLGSEPEIGISSTRLWHVV 478 Query: 244 QRYIRQLRRYLGLPLSTTA--------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 +R+ + +G A H +RH+ ATH L +G +L ++ L H +STT Sbjct: 479 KRFFKLAADVIGADHPAAADKLRRASPHWMRHTHATHALGSGAELTIVRDNLRHASVSTT 538 Query: 296 QIY 298 IY Sbjct: 539 SIY 541 >gi|330971325|gb|EGH71391.1| Phage integrase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 286 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 48/202 (23%), Positives = 92/202 (45%), Gaps = 22/202 (10%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +W N++ R T ++Y+ D F + T ++ R ++ + + A+ ++ + Sbjct: 31 DWFANIDNPR-----TRRAYQTDLEDFCSSVGLATADEF-----RMVTRSHVLAWRAQLK 80 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN--MRNLKKSNS--LPRALNEKQAL 135 + + +++R LS + S +L + N ++ R + ++N P AL + QA Sbjct: 81 KRGLAGSTIRRKLSALASLFDHLLESNAVAGGNPVHGIKRPMIETNEGKTP-ALGDHQAK 139 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGK 193 L+D T R AIL +L GLR EA L ++++ + L I GK Sbjct: 140 ALLD-----APDATTLKGLRGRAILAVLLYHGLRREEAAQLLVNHLVERRGIKHLVIHGK 194 Query: 194 GDKIRIVPLLPSVRKAILEYYD 215 G K+R +P+ P +L Y++ Sbjct: 195 GSKVRYLPVHPMAMDRLLSYWE 216 >gi|212693440|ref|ZP_03301568.1| hypothetical protein BACDOR_02956 [Bacteroides dorei DSM 17855] gi|212663953|gb|EEB24527.1| hypothetical protein BACDOR_02956 [Bacteroides dorei DSM 17855] Length = 297 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 70/159 (44%), Gaps = 35/159 (22%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------GDKIRIVPL---LP 204 A L+ Y GLR S+ LTP+N +RI GK G +IR+ PL Sbjct: 127 AFLFCCY-TGLRYSDFCQLTPENF------IRINGKRWLYFKSVKTGVEIRL-PLHLLFE 178 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 S IL+ Y P + P N V R +R+L G+ T H Sbjct: 179 SRALGILDRY-------------PDSGSLAALPCNSEV-NRQLRKLAGLCGIKKRITYHV 224 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 RH+ AT L+ G + ++Q +LGH + TTQIY+ + S Sbjct: 225 SRHTCATLLIHQGVAITTVQKLLGHTSVKTTQIYSEILS 263 >gi|206972881|ref|ZP_03233803.1| integrase family protein [Bacillus cereus AH1134] gi|206731765|gb|EDZ48965.1| integrase family protein [Bacillus cereus AH1134] Length = 358 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 69/304 (22%), Positives = 126/304 (41%), Gaps = 42/304 (13%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK---------RRTQKIGD 85 TL +Y D R F +L +E+ I ++ I+ +S+ ++ K + Q + + Sbjct: 43 TLLNYVYDFRVFFNWLL--SEQVIELKLIKDISFADLENLKKKDVENFMRFLKLQQNMQN 100 Query: 86 RSLKRSLSGIKSFLKYL------------------KKRKITTESNILNMRNLKKSNSLPR 127 S+ R +S +KS KYL K +I + LN R + + + Sbjct: 101 SSVNRKISALKSLFKYLTSLSENEDGECYFYRNVMAKIEIHKDKETLNARAKRMRSKIFH 160 Query: 128 ALNEKQALTLV--DNVLLHTSHETKWI---DARNSAILYLLYGCGLRISEALSLTPQNIM 182 ++++ L V ++ T H+ + R+ AIL L G G+R+SE L ++I Sbjct: 161 NNDDQEFLNYVKYEHEKSLTKHQLFYFLRDKDRDVAILSLFLGSGIRVSELADLRMEDIN 220 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKP 237 + + + KG+K V + P + +Y ++ P N+ L ++ +P Sbjct: 221 LKERLIDVIRKGNKEDSVWITPIALNDLEKYMEIRDNKYAPGKELKNVFLSKYKHT-AQP 279 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L+ Q + + + G +S H LRH+ A L D + LGH T + Sbjct: 280 LSVRAIQDIVEKYTKAYGKRMS--PHKLRHTLANKLYMEEKDSLQVMQQLGHTSQDTALL 337 Query: 298 YTNV 301 YT + Sbjct: 338 YTQL 341 >gi|330822404|ref|YP_004362625.1| Phage integrase family protein [Burkholderia gladioli BSR3] gi|327374241|gb|AEA65595.1| Phage integrase family protein [Burkholderia gladioli BSR3] Length = 611 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 64/266 (24%), Positives = 99/266 (37%), Gaps = 51/266 (19%) Query: 107 ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC 166 +T + L+ +LP + + L D W AR A++ L+ Sbjct: 352 VTDPKPVKRATKLQVQRALPIDVWSRVRAELADRAEGFGPQGPDWRLAR--ALVLLMGDA 409 Query: 167 GLRISEALS--------LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 GLRI EA++ ++ + LR+ GKG+K RIVPL +A+ E++ Sbjct: 410 GLRIEEAVTAERGGLQWWPAEDEIPATWMLRLVGKGNKERIVPLTEDAMEALREHWQDRG 469 Query: 219 FDLNL----NIQLPLFRGIRGKP---------------------LNPGVFQRYI-RQLRR 252 DL+ LPL P P +R + R + R Sbjct: 470 LDLDAPGTNADGLPLVAPTVVPPTPASRDKFGVTDTGQVTRVAGYTPRAARRVVTRAIGR 529 Query: 253 YLG-LP----------LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 L LP T+ H RH+F T + G + +Q +LGH L TT IY N Sbjct: 530 LLEQLPDLEESARRQLAGTSPHAFRHTFGTQSAAAGMAIEVLQQVLGHGSLQTTTIYVNA 589 Query: 302 NSKNGGDWMMEIYDQTHPSITQKDKK 327 + M + + H + +D K Sbjct: 590 EQQR----MRQESAKYHARLAARDLK 611 >gi|325270579|ref|ZP_08137179.1| integrase [Prevotella multiformis DSM 16608] gi|324987155|gb|EGC19138.1| integrase [Prevotella multiformis DSM 16608] Length = 407 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 16/148 (10%) Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 ++ C GL + +LTP NI +DD+ + + + + LL + K I+ Y Sbjct: 249 FIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPKRIITKYGHK 308 Query: 218 PF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 + D L LP+ + + +N Y++++ G+ T H RH+FAT LS Sbjct: 309 TYRDGKL---LPV---LTNQKINA-----YLKEIADLCGIKKRLTFHLARHTFATMSLSK 357 Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSK 304 G + S+ +LGH + TTQIY + +K Sbjct: 358 GVPMESVSKMLGHTNIKTTQIYARITNK 385 >gi|323146135|gb|ADX32374.1| phage integrase [Cronobacter phage ESSI-2] Length = 338 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 24/151 (15%) Query: 153 DARNSAILYLLYGC---GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 ++ +S++L + C G R SEA +L + + T R K K+R VP+ Sbjct: 189 ESNSSSVLLVAKICLATGARWSEAENLEGAQVTPYRITYR-NTKNKKVRSVPI------- 240 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 L ++P RG P F+R I+ + + LP H LRH+F Sbjct: 241 ----------SEKLYNEIPKKRGRLFTPCRK-TFERVIQ--KAGIDLPEGQCTHVLRHTF 287 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 A+H + NGG++ ++ ILGH + T IY + Sbjct: 288 ASHFMMNGGNILVLKDILGHSDIKMTMIYAH 318 >gi|317497960|ref|ZP_07956267.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA] gi|316894759|gb|EFV16934.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA] Length = 361 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 92/177 (51%), Gaps = 15/177 (8%) Query: 152 IDARNSAILY-LLYGCGLRISEALSLTPQNI-MDDQST-----LRIQGKGDKIR--IVP- 201 +D R +LY +LY G RI E L L +++ + D S +I+ KG K R VP Sbjct: 179 LDKRRDILLYKMLYLTGARIQEVLDLEIESVPVPDMSQPVGCFQQIKSKG-KTRDLYVPM 237 Query: 202 -LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 L+ + I E +L D + R + GK L ++++++ +G+ + Sbjct: 238 SLIQELDDFIFEERNLIDTDHSYIFVSEQARQL-GKQLTYSAAYDKLKKVQKEVGIDFN- 295 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 H LRH+F ++L+ +G D+ ++ I+GH LSTTQ YT++++ D + + ++Q+ Sbjct: 296 -FHDLRHTFCSNLVQSGMDVSVVRMIMGHEHLSTTQKYTHLSNPYIEDSLSKYWNQS 351 >gi|226324982|ref|ZP_03800500.1| hypothetical protein COPCOM_02774 [Coprococcus comes ATCC 27758] gi|225206330|gb|EEG88684.1| hypothetical protein COPCOM_02774 [Coprococcus comes ATCC 27758] Length = 358 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 59/271 (21%), Positives = 113/271 (41%), Gaps = 37/271 (13%) Query: 41 CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLK 100 D ++L +L Y + + +Q++ +E R L R +S ++SF Sbjct: 87 VDIEEYLEYLKVYDTTDVHTKETKQVTNSE---------------RGLFRKMSALRSFYN 131 Query: 101 YLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV----------LLHTSHETK 150 Y KR+I ++ L + K + L+ + L+D V L ++TK Sbjct: 132 YFFKRQIIQKNPTLFVDMPKLHDKAIIRLDTDEVAKLLDYVESCGSKLTGQALSYYNKTK 191 Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210 R+ AI+ LL G G+R+SE + L ++ + + + + KG +V V KA+ Sbjct: 192 ---ERDIAIITLLLGTGIRVSELVGLDLSDVDFNNNGVMVTRKGGSQMVVYFGEEVEKAL 248 Query: 211 LEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 Y + + P + LF + + + + +++ + T H L Sbjct: 249 RNYLETYRKAVTPL---AGYENALFLSTQKRRIGVQAVENMVKKYASQI-TNKRITPHKL 304 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 R ++ T L GD+ + +LGH ++TT+ Sbjct: 305 RSTYGTALYKETGDIYLVADVLGHKDVNTTK 335 >gi|253573171|ref|ZP_04850542.1| LOW QUALITY PROTEIN: phage integrase [Bacteroides sp. 1_1_6] gi|251837240|gb|EES65361.1| LOW QUALITY PROTEIN: phage integrase [Bacteroides sp. 1_1_6] Length = 237 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 49/181 (27%), Positives = 83/181 (45%), Gaps = 11/181 (6%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK-RRTQKIGDR 86 +R +SK T+ SY QF+ ++ + ++ L+ + ++ T+K Sbjct: 16 QRNVSKNTIASYRDSFVQFINYMKDINGIPVERLLLKHLTRDNVINYLQWLHNTKKNTSA 75 Query: 87 SLKRSLSGIKSFLKYLKK---RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 + L+ I+SF YL+ + +IL+++ K S P L+ + +LL Sbjct: 76 TCNYRLAAIRSFCSYLQYIVIDNMVEWQSILSIKAKKTEISPPNYLSMEGI-----KLLL 130 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDKIRIVP 201 T W R+ A+L L+Y G R+ E LT + D + T+R+ GKG K RIVP Sbjct: 131 AQPDTTSWKGRRHLALLSLMYDTGARVQEIADLTVDCVRIDTTPYTIRLTGKGRKTRIVP 190 Query: 202 L 202 L Sbjct: 191 L 191 >gi|254425489|ref|ZP_05039206.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus sp. PCC 7335] gi|196187912|gb|EDX82877.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus sp. PCC 7335] Length = 339 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 63/268 (23%), Positives = 114/268 (42%), Gaps = 22/268 (8%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +W+ +R + T ++Y R F ++ F ++ + S ++ + Sbjct: 34 DWVDEFLGDREIRPNTKKAYTRQLRGFQVWCEFKHWGDVSEADV---SRYKVHLKNKPTK 90 Query: 80 TQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 KIG S+ ++++ ++SF K+L ++ T + LN+ + + + + + L Sbjct: 91 AGKIGLSPASVNQAIATLQSFFKWLATKRYITYNPTLNVEKVPAAPTETKDIEVAAVRQL 150 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGD 195 + + E + R++AI LL GLR +E L NI D Q+ + K Sbjct: 151 AEGLEYRGQREQ--LSTRDTAIFELLK-HGLRATEVSKL---NIGDYNGQAVQVSEAKWR 204 Query: 196 KIRIVPLLPSVRKAILEYYDLC---PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 VPL P+ R+A+ Y C FD + PLFR + + I ++ + Sbjct: 205 SDGTVPLAPNARQALDSYLGWCVRKGFDTSSG--EPLFRSLSRNGYGKRLGYWGIYEMVK 262 Query: 253 YLGLPLSTT----AHTLRHSFATHLLSN 276 LG + TT H LRH+F T L+ N Sbjct: 263 DLGAIVETTENVHPHRLRHTFGTQLVLN 290 >gi|193297474|gb|ACF17809.1| XerCD [Helicobacter pylori] Length = 239 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 61/228 (26%), Positives = 102/228 (44%), Gaps = 27/228 (11%) Query: 95 IKSFLKYL-KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153 ++ F YL +K+ + + N+ K SLPR LN K + + +L + T + Sbjct: 8 LRQFFDYLDRKKHYNFDFALKNLAFAKTKESLPRHLNYKDLKSFLKTLLEYKP--TTSFE 65 Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQS--TLRIQGKGDK-----IRIVPLLPSV 206 RN +L ++ GLR E L++ ++I ++ ++ IQGKG K I+ L PS+ Sbjct: 66 KRNKCVLLIVILGGLRKCEVLNIELKHIQVEEQNYSILIQGKGRKERKAYIKKSLLEPSL 125 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN--------PGVFQRYIRQLRRYLGLPL 258 + + Y L F+ LF+ + K N P +F+ + Q++ Y Sbjct: 126 NAWLSDDYRLKYFN-----GAYLFKKDKQKSQNSLTLYNFIPLIFK--LAQIKHYK--QY 176 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 T H RHS AT + DL LGH L +T+IY + ++ Sbjct: 177 GTGLHLFRHSCATLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHN 224 >gi|325955991|ref|YP_004286601.1| integrase family protein [Lactobacillus acidophilus 30SC] gi|325332556|gb|ADZ06464.1| integrase family protein [Lactobacillus acidophilus 30SC] Length = 410 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 58/233 (24%), Positives = 95/233 (40%), Gaps = 54/233 (23%) Query: 116 MRNLKKSNSLPRALNEKQALTLVD-----NVLLHTSHETKWIDARNSAILYLLYGCGLRI 170 +R+LKK L A +++ALT+ N + + W ++ G GLR+ Sbjct: 165 LRDLKKVRGLHGA--KRKALTVAQQNLFLNFVKSSPKYRHWY-----PTFAVMVGSGLRV 217 Query: 171 SEALSLTPQNI--------------MDDQSTLRIQGKG-------DKIRIVPLLPSVRKA 209 E L Q+I D+S + G G R VP++ SV++A Sbjct: 218 GELTGLRWQDIDFQNNLINVNHTLIFYDRSKAKYTGFGINTPKTKAGYRSVPMIASVKEA 277 Query: 210 I------LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL----- 258 L+ DLC D+ + +F G + G + I+++ R Sbjct: 278 FEEQKQYLKDNDLCSIDVIDGFKDFIFVNRFGHVQHQGTLNKAIKRIIRDANFDALEKNP 337 Query: 259 ---------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301 + + HTLRH+F T L+ +G +++ IQ LGH + TT IY +V Sbjct: 338 AIKEENLLPNFSCHTLRHTFTTRLIESGMNIKVIQEALGHSDIQTTLDIYADV 390 >gi|325953868|ref|YP_004237528.1| integrase [Weeksella virosa DSM 16922] gi|323436486|gb|ADX66950.1| integrase family protein [Weeksella virosa DSM 16922] Length = 388 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 73/298 (24%), Positives = 135/298 (45%), Gaps = 37/298 (12%) Query: 24 NLEIERGLSKLTLQSYE---CDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 N +E+ +L +SY C R L + +K++IQ+I + I I + + Sbjct: 89 NFSLEKLKQRLKPKSYSDYLCTNRFILDAVIRLKYDKLSIQSIERYHIKTIMEDI--KIS 146 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 +K + + ++L +KS L L + I + +R LK S P + Q T Sbjct: 147 RKWSNHAYNKNLGYLKSILSELVEFDIIKTNPAHGIRLLKYETS-PTSFPTDQEQT---K 202 Query: 141 VLLHTSHETKWIDARNSAILYL---LYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKG 194 ++ H + ARN L LY G+R +E L L ++ D+ + ++ GK Sbjct: 203 IIQH-------LYARNFTYLRFVKALYQTGMRPAELLRLKVGDVDLDRDLILLKSDDGKT 255 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPF---DLNLNIQLPLFRGIR---GKPLNPGVFQ---- 244 +K R+VP+ ++K +L + P DL L P G + + +P ++ Sbjct: 256 NKYRLVPIKSDLKKDLLTI--ISPTHGPDLYL-FGTPRKHGGKLDYSEMFSPNKYKIKRD 312 Query: 245 RYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + ++Y+ L ++ ++L+H A ++ +G D+ +IQ+I GH + TT+IY N Sbjct: 313 TVTKYWKKYIKDELGINKNLYSLKHKAANDMMFDGLDIETIQAIFGHSKAKTTEIYAN 370 >gi|237744578|ref|ZP_04575059.1| integrase/recombinase [Fusobacterium sp. 7_1] gi|229431807|gb|EEO42019.1| integrase/recombinase [Fusobacterium sp. 7_1] Length = 328 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 11/158 (6%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL---RIQGKGDKIRIVPLLPSVRKAIL 211 RN ILY L+ G+R E L+L ++ + ++ I+ K K P+ S+ K + Sbjct: 155 RNITILYTLFYTGMRSKELLTLKFKHYLKRENEYFFKLIETKSGKDVYKPIHKSLVKKLE 214 Query: 212 EY--YDLCPFDLNLNI--QLPLFRG--IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 EY Y + + L+L + +F + PL+ I+ + + +G +S H + Sbjct: 215 EYKEYLMSMYSLDLKDLEEKYIFSTSVLDNSPLSYRSLNAIIQDMGKLIGKDIS--PHNI 272 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 RH+ AT L +G D+ I+ LGH T++Y N S Sbjct: 273 RHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARS 310 >gi|207724626|ref|YP_002255023.1| integrase/recombinase protein [Ralstonia solanacearum MolK2] gi|206589849|emb|CAQ36810.1| integrase/recombinase protein [Ralstonia solanacearum MolK2] Length = 553 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 71/303 (23%), Positives = 116/303 (38%), Gaps = 42/303 (13%) Query: 27 IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 IERG LS LT + D + FL + + + R + + R F T + Sbjct: 243 IERGRPLSSLTTE----DAIAYRGFLRHPSPHERWVGPARPRASADWRPF-----TDGLS 293 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 RS+ SLS + + ++L +++ + ++ + AL+ A T + L+ Sbjct: 294 ARSIAYSLSVLGAMFRWLVQQRYVLANPFAGIK--VRGGGRTAALDASHAFTEGEWALVR 351 Query: 145 T-SHETKW-------IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGK 193 T + +W R +L Y GLR SE + + D+ L + GK Sbjct: 352 TIADGLEWSYGWEAPAAQRLRFVLDFAYATGLRASELIGARLSGVETDRQGDHWLSLIGK 411 Query: 194 GDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 G + V L P R A+ Y L N Q PL + P R + Sbjct: 412 GGRAGKVALPPLARTALDRYLVERGLPVTRARWNPQTPLIGALGLDPDGGITGSRLWSVV 471 Query: 251 RRYLGLPLS---------------TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 RR+ + H +RH+ A+H L+ G +L +++ L H +STT Sbjct: 472 RRFFWAAADIIEGDHTVLAEKLRKASPHWMRHTHASHALARGAELTTVRDNLRHASISTT 531 Query: 296 QIY 298 IY Sbjct: 532 SIY 534 >gi|47060319|ref|NP_665769.2| ANL28 [Synechococcus elongatus PCC 7942] gi|81230370|ref|YP_398752.1| integrase/recombinase [Synechococcus elongatus PCC 7942] gi|51338807|sp|Q8KUV2|XERC_SYNE7 RecName: Full=Tyrosine recombinase xerC gi|47059650|gb|AAM81156.2|AF441790_27 ANL28 [Synechococcus elongatus PCC 7942] gi|81170342|gb|ABB58680.1| integrase/recombinase [Synechococcus elongatus PCC 7942] Length = 320 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 76/321 (23%), Positives = 137/321 (42%), Gaps = 38/321 (11%) Query: 9 IVSFELLKERQNW--LQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR-- 64 +V + Q+W LQ L +E S T ++Y+ D R +F A++ +E + I Sbjct: 7 VVESRAIAPVQDWDVLQML-LEDHRSPNTRRAYDRDLR---LFFAWWLDEDPHPEAIAYW 62 Query: 65 -QLSYTEIRAFI----SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES-------N 112 L +E A + + R + + + ++ R L+ +KS +++ ++ T S Sbjct: 63 LSLPQSEAIAVVLRWKASMRDRGLAEATINRRLAALKSLVRFSRRLGRCTFSLEDVKGDR 122 Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172 + + R+ + + P E LL + AR+ AIL LL+ LR SE Sbjct: 123 VQSYRD--TTGTTPERFRE----------LLALPNRQTAKGARDYAILRLLWENALRRSE 170 Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232 A+ Q++ L I GKG + +P+ SV + + D + + PLF Sbjct: 171 AVQTRVQDLEQGDRRLWILGKGKGRQRLPVSLSV-EMVQALQDWLRWHPKAEPEQPLFTA 229 Query: 233 IR----GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL-SNGGDLRSIQSIL 287 + G+ L+ +++ + L + H +RHS T L + GG++R +Q + Sbjct: 230 LDRRSYGQQLSDQAVYLLVKRSAEAIKLGKRLSPHRIRHSAITAALDATGGNIRLVQKLS 289 Query: 288 GHFRLSTTQIYTNVNSKNGGD 308 H RL T Q Y + G+ Sbjct: 290 RHSRLETLQRYDDARQDFQGE 310 >gi|307546670|ref|YP_003899149.1| type 1 fimbriae regulatory protein FimB [Halomonas elongata DSM 2581] gi|307218694|emb|CBV43964.1| K07357 type 1 fimbriae regulatory protein FimB [Halomonas elongata DSM 2581] Length = 208 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 85/198 (42%), Gaps = 12/198 (6%) Query: 108 TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167 TE+ + R + + L + L+ + H H R++ ++ L + G Sbjct: 15 ATETRTVQNRTANDTRRGRQHLTRDEVHRLIRGAMHHQRH-----GRRDALMIRLAFEHG 69 Query: 168 LRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226 LR+SE ++L I LR+ KG PL S +A+ Y L Sbjct: 70 LRVSELVALRWSAIDLVTHELRVNRIKGSLDGTHPLQGSTVRALKRYQRQDGRSSGL--- 126 Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286 +F RG P++ F+R + +L + L + H LRH+ HL+++G DLR +Q Sbjct: 127 --VFVNERGTPVSVDGFRRMMHRLSEQV-LGVKWHPHALRHACGVHLINSGVDLRIVQQY 183 Query: 287 LGHFRLSTTQIYTNVNSK 304 LGH + T YT + + Sbjct: 184 LGHANIQNTVAYTALTGR 201 >gi|294647344|ref|ZP_06724937.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294809035|ref|ZP_06767757.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|292637303|gb|EFF55728.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294443760|gb|EFG12505.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] Length = 368 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 72/156 (46%), Gaps = 37/156 (23%) Query: 163 LYGC--GLRISEALSLTPQN--IMDDQS-TLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 L+ C GLRIS+ L+L ++ I DQ LRI+ + K + LP +A Y+LC Sbjct: 225 LFACLTGLRISDILNLQWEDFTIAPDQGYCLRIRTQ--KTQTEATLPISYEA----YELC 278 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY--------LGLPLSTTAHTLRHSF 269 G P VF+ R + Y G+ S T H RHS+ Sbjct: 279 -----------------GTPGTGKVFKDLKRSMINYPLKNWLKKAGITKSITFHCFRHSY 321 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTN-VNSK 304 A +S G D+ ++ +L H +STTQIY + VNSK Sbjct: 322 AVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSK 357 >gi|270339834|ref|ZP_06006153.2| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270333598|gb|EFA44384.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 381 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 62/185 (33%), Positives = 82/185 (44%), Gaps = 30/185 (16%) Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTL 188 E+ ALT D L + + +D N L L GC GL S+ L MDD TL Sbjct: 179 ERNALTSDDLHKLLSYRPHRSVD--NHCRLIFLLGCFTGLAFSDLKKLR----MDDVYTL 232 Query: 189 R--------IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240 + K IVPLLP + + D L LFR P N Sbjct: 233 DDGRRYISLCRTKTQNRSIVPLLPIAEEILTIVSDGQKEGL-------LFREF---PTN- 281 Query: 241 GVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQI 297 F R IR + GLP T T+HT RH+FAT + L NG + ++ +LGH +STT++ Sbjct: 282 SHFNRKIRDIIIKAGLPPHTEATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEL 341 Query: 298 YTNVN 302 Y V+ Sbjct: 342 YAKVS 346 >gi|260911952|ref|ZP_05918516.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon 472 str. F0295] gi|260633899|gb|EEX52025.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon 472 str. F0295] Length = 386 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 8/93 (8%) Query: 221 LNLNIQLPLFRGIRGKP--------LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 L++ Q G RG+P +P IR+ G+ T H RH+FA Sbjct: 276 LDITGQAAELMGKRGRPEEHVFDEIHSPTCTNTAIREWVLRAGINKKITFHCARHTFAVM 335 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 +L G D+ ++ +LGH LSTTQIY V KN Sbjct: 336 MLDLGTDIYTVSKLLGHRELSTTQIYAKVLDKN 368 >gi|226356242|ref|YP_002785982.1| integrase [Deinococcus deserti VCD115] gi|226318232|gb|ACO46228.1| putative Integrase [Deinococcus deserti VCD115] Length = 444 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 2/81 (2%) Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281 L P+F + G+P+ ++ +R+ G+PL + H LRHS T+L+S G D Sbjct: 310 GLKDHAPVFPSVDGRPMRQDSLRQIMRRTCEVAGVPL-LSPHALRHSTGTYLISRGHDPV 368 Query: 282 SIQSILGHFRLSTT-QIYTNV 301 S+ ++LGH ++STT IY + Sbjct: 369 SVAALLGHAQVSTTLNIYAHA 389 >gi|239620866|ref|ZP_04663897.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239516231|gb|EEQ56098.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 351 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 71/301 (23%), Positives = 119/301 (39%), Gaps = 31/301 (10%) Query: 19 QNWLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 ++WL + L RG S T+++Y ++ +L + + + ++ Sbjct: 21 RDWLHHWLPKVRGSSPKTVEAYRIGLESYVRWLETTEGTQRSHIGFGHFDRARLGRWVEW 80 Query: 78 RRTQK-IGDRSLKRSLSGIKSFLKY--LKKRKITTESNILNMRNLKKSNSLP-RALNEKQ 133 RT++ DR++ ++ ++ FL + L+ +T N +K P L E+ Sbjct: 81 MRTERGYSDRTIMLRMTTMRVFLDHAGLEHPALTALGNDAAGIRVKPPARKPVDHLGEEH 140 Query: 134 ALTLVDNVLLHTSHETKWI--DA---RNSAILYLLYGCGLRISEALSLTPQNI-MDDQST 187 A L+ T W DA RN +L L+Y RI E +LT ++ MD + Sbjct: 141 AKALL----------TAWGTGDAKSRRNRMLLILMYDTAARIGELAALTIADVGMDKPAR 190 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 + + GK K R+VPL R + Y + P + PLF R + P R Sbjct: 191 VTLTGKRGKSRVVPLGERTRTHLAAYLEEFHPGPSMRDGDRPLFHSTRNGAIQPLSVDRI 250 Query: 247 IRQLRRYLG---------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L+ +P H +R + A L G L I +LGH +STT Sbjct: 251 DEILKTAAARARRGTCPSMPERVHCHLIRRTRAMDLYQQGVPLPLIMQLLGHESMSTTSA 310 Query: 298 Y 298 + Sbjct: 311 F 311 >gi|60681334|ref|YP_211478.1| putative phage integrase/recombinase [Bacteroides fragilis NCTC 9343] gi|60492768|emb|CAH07542.1| putative phage integrase/recombinase [Bacteroides fragilis NCTC 9343] Length = 305 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 KP P ++ Y +Q + +G+P+ H LRHSFAT + + D +++ ILGH +ST Sbjct: 222 AKPTEPRTYRNYYKQFMQEIGVPI-LKFHGLRHSFATRCIESKCDYKTVSVILGHSNIST 280 Query: 295 T 295 T Sbjct: 281 T 281 >gi|198283395|ref|YP_002219716.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198247916|gb|ACH83509.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] Length = 331 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 61/232 (26%), Positives = 100/232 (43%), Gaps = 34/232 (14%) Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 A I + T ++ RSL +K L ++++T E+ ++ L + N E+ Sbjct: 105 AMIIRDMTGAYAPATINRSLGALKKALTLAWEQELTPENYGARIKRLPEHN-------ER 157 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 ++ V SH + D +AI L+ G R E L +++ + T+R Sbjct: 158 HIYLTLEQVNELASHAS---DPVAAAIWIALF-TGCRRGEITKLKAEDVGETTITIRAGN 213 Query: 193 -KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 K K R VP++ +R + PF +PL P+N + R+ R Sbjct: 214 TKTLKTRTVPIIGPMRLWL-------PF-------IPL-------PINAEGLKSGFRRAR 252 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 GLP H LRHS A+ LL++G DL +I ILGH T+ Y ++ + Sbjct: 253 EKAGLP-HLHFHDLRHSCASILLASGADLYTISRILGHSSTKMTERYAHLQT 303 >gi|237745531|ref|ZP_04576011.1| integrase [Oxalobacter formigenes HOxBLS] gi|229376882|gb|EEO26973.1| integrase [Oxalobacter formigenes HOxBLS] Length = 321 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 89/191 (46%), Gaps = 23/191 (12%) Query: 124 SLPRALNEKQA-LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 LP+ NE+Q+ + + ++L S + A++ + + G+R+ E +S+ ++ + Sbjct: 152 ELPKVKNERQSFIDRREMIMLSRSFRGLGAEREARALVRIAFYSGMRLGEMMSIGRKSAL 211 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242 D I K + R VP+ P + A+ +Y LP+ + Sbjct: 212 LDDGFNLIDTKNGEDRYVPMHPKITTAV-KY-------------LPI-------SYSKKW 250 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 Q IR+ +GL H LRHS AT L+++ DL ++ +LGH + TTQ Y++V Sbjct: 251 MQVLIRRAMDNVGLK-EIRLHDLRHSTATSLINSEKDLYLVKDLLGHKDIRTTQRYSHVL 309 Query: 303 SKNGGDWMMEI 313 K D++ +I Sbjct: 310 KKTLQDFVRKI 320 >gi|157149395|ref|YP_001451419.1| resolvase [Escherichia coli E24377A] gi|157076562|gb|ABV16275.1| resolvase [Escherichia coli E24377A] Length = 268 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 58/238 (24%), Positives = 95/238 (39%), Gaps = 70/238 (29%) Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHT-------SHETKWI-----DARNSAILYLLYG 165 + ++ SLP A++ AL L ++H + E + D R +L L+ Sbjct: 19 SAEQPASLPVAIDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVPDLRRKMLLATLWN 78 Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL-------------- 211 G RI+EAL+LT +GD + P P V+ A L Sbjct: 79 TGARINEALALT---------------RGD-FSLTPPYPFVQLAALKQRTEKAARTAGRT 122 Query: 212 ----EYYDLCPFD------------LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 + Y L P L I + G+ +++ R +R ++G Sbjct: 123 PARQQTYRLVPLSDFWYVSQLQTMVATLKISMERRNKRTGRTEKVRIWEVTDRTVRTWIG 182 Query: 256 LPLSTTA------------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 ++T A HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 183 EAVATAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240 >gi|257870365|ref|ZP_05650018.1| integrase/recombinase [Enterococcus gallinarum EG2] gi|257804529|gb|EEV33351.1| integrase/recombinase [Enterococcus gallinarum EG2] Length = 320 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 55/246 (22%), Positives = 110/246 (44%), Gaps = 18/246 (7%) Query: 61 QTIRQLSYTEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119 ++ ++ +IR FI+ R ++ +L R I F K+L + + + N+ Sbjct: 80 KSFSDVTTNDIRLFIANREMIDRVSKGTLARERGCIVRFFKWLCNEEYIAKDPGARVENI 139 Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 K +P+ KQ + ++ L ++ +++ + I+ LL G R+SE +SL + Sbjct: 140 K----VPK--RRKQEFSELEVEKLRSA----TANSKEALIIELLLSTGCRVSELVSLNFR 189 Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPL 238 + + ++ + GKG+K R + L + A+ Y P +I PLF G GK + Sbjct: 190 DYDQENDSITVIGKGNKQRTLYLNAKAKMALNHYLKDVP-----HITGPLFFGQTVGKEM 244 Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 Q+ +++L + + H R + AT +G + + + LGH + TT Y Sbjct: 245 TSAGVQKLVKRLGNRAEVA-NVHPHRFRRTAATLARRHGMPIELVMNFLGHESIDTTLKY 303 Query: 299 TNVNSK 304 + + + Sbjct: 304 SMIGDE 309 >gi|218667294|ref|YP_002425983.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] gi|218519507|gb|ACK80093.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] Length = 331 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 61/232 (26%), Positives = 100/232 (43%), Gaps = 34/232 (14%) Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 A I + T ++ RSL +K L ++++T E+ ++ L + N E+ Sbjct: 105 AMIIRDMTGAYAPATINRSLGALKKALTLAWEQELTPENYGARIKRLPEHN-------ER 157 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 ++ V SH + D +AI L+ G R E L +++ + T+R Sbjct: 158 HIYLTLEQVNELASHAS---DPVAAAIWIALF-TGCRRGEITKLKAEDVGETTITIRAGN 213 Query: 193 -KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 K K R VP++ +R + PF +PL P+N + R+ R Sbjct: 214 TKTLKTRTVPIIGPMRLWL-------PF-------IPL-------PINAEGLKSGFRRAR 252 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 GLP H LRHS A+ LL++G DL +I ILGH T+ Y ++ + Sbjct: 253 EKAGLP-HLHFHDLRHSCASILLASGADLYTISRILGHSSTKMTERYAHLQT 303 >gi|15829002|ref|NP_326362.1| integrase/recombinase [Mycoplasma pulmonis UAB CTIP] gi|14089946|emb|CAC13704.1| INTEGRASE/RECOMBINASE [Mycoplasma pulmonis] Length = 274 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 57/210 (27%), Positives = 89/210 (42%), Gaps = 36/210 (17%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETK 150 L+ K FLK+ KK K + L +KK + + R L K+ L L ++++ Sbjct: 84 LASYKGFLKFHKKYKKVEDLLFLK---IKKIDIVYRPVLKNKRLLKLTQ----FEENDSE 136 Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210 I + ++ LY G+RI E +L N L + GKG+K R + L Sbjct: 137 RI-KKTKILIRFLYQTGIRIGELNTLILVN-----KKLYVHGKGNKNRQILYLEETFNTF 190 Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 YY + ++L + I GK +P H+LR SFA Sbjct: 191 RNYYPDLRYPMSLKTLRIEIKKILGKEFSP----------------------HSLRRSFA 228 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 TH++ +G D ++I LGH ++TT Y N Sbjct: 229 THMMQSGADPKTIMLQLGHSSINTTFQYVN 258 >gi|67920907|ref|ZP_00514426.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera watsonii WH 8501] gi|67857024|gb|EAM52264.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera watsonii WH 8501] Length = 279 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 68/271 (25%), Positives = 113/271 (41%), Gaps = 34/271 (12%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 SKLT Q Y+ + +QF+ F+ EE + +I F+ + ++K Sbjct: 23 SKLTRQHYQSNIKQFIRFIGLSLEE---------VKIEDIHGFVRMLELKGNKPSTIKGK 73 Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 LS +KS + K T N+ L KS P+ +N++ A ++N + K Sbjct: 74 LSTVKSLFSFAYKVGYLTS----NVAVLVKS---PK-VNKRIASMRIENEDIR-----KM 120 Query: 152 IDARNSA----ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207 +D NS I+ ++Y GLR+SE L L Q+ + I GKG+K R S+ Sbjct: 121 VDGTNSKRDRLIIKMMYFLGLRVSEVLRLKWSYFY--QNKVFISGKGNKER------SLN 172 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 + +L N R + L + +L++ LG+ + H +H Sbjct: 173 LPEELFLELSELKSEFNPTFVFTAYQRDEQLKRQAVNIMLNRLKKRLGIDANIHPHKFKH 232 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + L NG D+ + LGH +S T+ Y Sbjct: 233 EHSMTSLDNGCDIHLLSRSLGHSSVSITESY 263 >gi|189440818|ref|YP_001955899.1| Integrase [Bifidobacterium longum DJO10A] gi|189429253|gb|ACD99401.1| Integrase [Bifidobacterium longum DJO10A] Length = 312 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 18/149 (12%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEY 213 ++ L+ GLR SEAL LTP + TL + + +P SVRK L++ Sbjct: 142 LILLVAKTGLRFSEALGLTPDDFDFVHQTLSVNKTWNYKNGGGFVPTKNASSVRKVQLDW 201 Query: 214 YDLCPFDL---NLNIQLPLFRGIRGKPLNP---GVFQRYIRQLRRYLGLPLSTTAHTLRH 267 + + NL P+F + GK N G+ R+ +Q G+P+ + H LRH Sbjct: 202 QLIMQLSVLLKNLPDDKPIF--VNGKVYNSTANGILARHCKQA----GVPV-ISIHGLRH 254 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + A+ LL G + S+ LGH ++TTQ Sbjct: 255 THASLLLFAGVSIASVSKRLGHASMNTTQ 283 >gi|188574132|ref|YP_001919300.1| resolvase [Escherichia coli 53638] gi|188501307|gb|ACD54442.1| resolvase [Escherichia coli 53638] Length = 226 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 82/182 (45%), Gaps = 40/182 (21%) Query: 153 DARNSAILYLLYGCGLRISEALSLT-------PQNIMDDQSTL--------RIQGKGDK- 196 D R +L L+ G RI+EAL+LT P +TL R G+ Sbjct: 24 DLRRKMLLATLWNTGARINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAGRAPAG 83 Query: 197 ---IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLR 251 R+VPL + + L+ + +++P+ R + G+ +++ R +R Sbjct: 84 QQTHRLVPLSDTWYVSQLQ-------TMVATLKIPMERRNKRTGRTEKARIWEVTDRTVR 136 Query: 252 RYLG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 ++G + T HT RHS+A H+L G L+ +QS++GH +S+T++YT Sbjct: 137 TWIGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYT 196 Query: 300 NV 301 V Sbjct: 197 KV 198 >gi|258649068|ref|ZP_05736537.1| integrase [Prevotella tannerae ATCC 51259] gi|260850700|gb|EEX70569.1| integrase [Prevotella tannerae ATCC 51259] Length = 438 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 16/148 (10%) Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 ++ C GL + +LTP NI +DD+ + + + + LL + K I+ Y Sbjct: 280 FIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPKRIITKYGHK 339 Query: 218 PF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 + D L LP+ + + +N Y++++ G+ T H RH+FAT LS Sbjct: 340 TYRDGKL---LPV---LTNQKINA-----YLKEIADLCGIKKRLTFHLARHTFATMSLSK 388 Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSK 304 G + S+ +LGH + TTQIY + +K Sbjct: 389 GVPMESVSKMLGHTNIKTTQIYARITNK 416 >gi|315608474|ref|ZP_07883461.1| integrase [Prevotella buccae ATCC 33574] gi|315249800|gb|EFU29802.1| integrase [Prevotella buccae ATCC 33574] Length = 438 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 16/148 (10%) Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 ++ C GL + +LTP NI +DD+ + + + + LL + K I+ Y Sbjct: 280 FIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPKRIITKYGHK 339 Query: 218 PF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 + D L LP+ + + +N Y++++ G+ T H RH+FAT LS Sbjct: 340 TYRDGKL---LPV---LTNQKINA-----YLKEIADLCGIKKRLTFHLARHTFATMSLSK 388 Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSK 304 G + S+ +LGH + TTQIY + +K Sbjct: 389 GVPMESVSKMLGHTNIKTTQIYARITNK 416 >gi|260892325|ref|YP_003238422.1| integrase family protein [Ammonifex degensii KC4] gi|260864466|gb|ACX51572.1| integrase family protein [Ammonifex degensii KC4] Length = 414 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%) Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 GKP+ P F R + + GL H LRH+FAT LL++G +L+++Q +LGH R+ST Sbjct: 330 GKPIWPRNFLRAFHSVLKKAGLERHRF-HALRHTFATLLLASGEELKNVQELLGHERIST 388 Query: 295 T-QIYTNV 301 T +Y V Sbjct: 389 TADVYAEV 396 >gi|260494457|ref|ZP_05814587.1| integrase/recombinase [Fusobacterium sp. 3_1_33] gi|260197619|gb|EEW95136.1| integrase/recombinase [Fusobacterium sp. 3_1_33] Length = 328 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 11/158 (6%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL---RIQGKGDKIRIVPLLPSVRKAIL 211 RN ILY L+ G+R E L+L ++ + ++ I+ K K P+ S+ K + Sbjct: 155 RNITILYTLFYTGMRSKELLTLQFKHYLKRENEYFFKLIETKSGKDVYKPIHKSLVKKLE 214 Query: 212 EY--YDLCPFDLNLNI--QLPLFRG--IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 EY Y + + L+L + +F + PL+ I+ + + +G +S H + Sbjct: 215 EYKEYLMSMYSLDLKDLEEKYIFSTSVLDNSPLSYRSLNAIIQDMGKLIGKDIS--PHNI 272 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 RH+ AT L +G D+ I+ LGH T++Y N S Sbjct: 273 RHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARS 310 >gi|288920638|ref|ZP_06414942.1| integrase family protein [Frankia sp. EUN1f] gi|288347978|gb|EFC82251.1| integrase family protein [Frankia sp. EUN1f] Length = 376 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 35/59 (59%) Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 R + + R LGLP H+LR S+ THL+ +G D +Q +GH STT IYT V+S Sbjct: 292 RRLTEYRNALGLPAGLDVHSLRRSYVTHLIEDGWDPLFVQQQVGHEHASTTAIYTCVSS 350 >gi|260593040|ref|ZP_05858498.1| integrase [Prevotella veroralis F0319] gi|260535012|gb|EEX17629.1| integrase [Prevotella veroralis F0319] Length = 438 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 16/148 (10%) Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 ++ C GL + +LTP NI +DD+ + + + + LL + K I+ Y Sbjct: 280 FIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPKRIITKYGHK 339 Query: 218 PF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 + D L LP+ + + +N Y++++ G+ T H RH+FAT LS Sbjct: 340 TYRDGKL---LPV---LTNQKINA-----YLKEIADLCGIKKRLTFHLARHTFATMSLSK 388 Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSK 304 G + S+ +LGH + TTQIY + +K Sbjct: 389 GVPMESVSKMLGHTNIKTTQIYARITNK 416 >gi|227546691|ref|ZP_03976740.1| phage family integrase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213008|gb|EEI80887.1| phage family integrase [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 318 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 18/149 (12%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEY 213 ++ L+ GLR SEAL LTP + TL + + +P SVRK L++ Sbjct: 151 LILLVAKTGLRFSEALGLTPDDFDFVHQTLSVNKTWNYKNGGGFVPTKNASSVRKVQLDW 210 Query: 214 YDLCPFDL---NLNIQLPLFRGIRGKPLNP---GVFQRYIRQLRRYLGLPLSTTAHTLRH 267 + + NL P+F + GK N G+ R+ +Q G+P+ + H LRH Sbjct: 211 QLIMQLSVLLKNLPDDKPIF--VNGKVYNSTANGILARHCKQA----GVPV-ISIHGLRH 263 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + A+ LL G + S+ LGH ++TTQ Sbjct: 264 THASLLLFAGVSIASVSKRLGHASMNTTQ 292 >gi|228937164|ref|ZP_04099861.1| Site-specific recombinase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228822497|gb|EEM68429.1| Site-specific recombinase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 293 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 66/297 (22%), Positives = 129/297 (43%), Gaps = 29/297 (9%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY---TEEKITIQTIRQLSYTEIRAFIS 76 +++ +L E L TL+ Y D + F+ + E I + T R Sbjct: 4 DFISSLSQEGDLHTKTLKEYTSDLKDFVFWFENVWGKHAEDTLFHPIEVTARTIARYREH 63 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 + T+ + ++ R ++ IK + + K++ + + +++ + + P+ +++K+ Sbjct: 64 MQVTRLLKPSTINRRINSIKRYFDWAKQKGLVQTNYSKSIKFVPTEKTSPKRMSDKEEAA 123 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGK 193 L+ V K+ R+ A++ + GLR E + ++++ + + GK Sbjct: 124 LMYAV-------EKYGTLRDRAMIIFMLHTGLRSMEVCDVQIEDVIMRKRGGYVVVRSGK 176 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNP----GVFQRYIR 248 +K R VPL + R A+ E+ L Q LF + GK L + Q+YIR Sbjct: 177 RNKQREVPLNSTARCALEEHIRLSEIS-----QSYLFPSSKTGKRLQERAIRHILQKYIR 231 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 L + G +AH LRH F ++++ L + I+GH L+TT IY ++ Sbjct: 232 -LAKLEGF----SAHDLRHRFG-YVMAERTPLHRLAQIMGHDNLNTTMIYVRATQED 282 >gi|255038961|ref|YP_003089582.1| integrase family protein [Dyadobacter fermentans DSM 18053] gi|254951717|gb|ACT96417.1| integrase family protein [Dyadobacter fermentans DSM 18053] Length = 406 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 10/124 (8%) Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 K D +PLLP + I+E Y+ P N N LP+ L+ Y++++ Sbjct: 288 KTDTPSRIPLLPMALE-IMEKYEDHPQCENENRVLPV--------LSNQKMNSYLKEIAD 338 Query: 253 YLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 G+ + T H RH+FAT + L+NG + S+ +LGH + TTQ Y + + D M Sbjct: 339 LCGVKKNITFHLARHTFATTVTLTNGVPIESVSKMLGHRNIKTTQQYAKIVDRKISDDMA 398 Query: 312 EIYD 315 + D Sbjct: 399 RLKD 402 >gi|160937770|ref|ZP_02085129.1| hypothetical protein CLOBOL_02662 [Clostridium bolteae ATCC BAA-613] gi|158439209|gb|EDP16962.1| hypothetical protein CLOBOL_02662 [Clostridium bolteae ATCC BAA-613] Length = 321 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 16/145 (11%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 I+ + G+R+SE +S Q++++ I KG+K+R V + ++++ L + + Sbjct: 170 IIRFITATGVRVSELISFQIQDVINGYKD--IYSKGNKMRRVYIPTALQEDTLRWLE-SE 226 Query: 219 FDLNLNIQLPLF-----RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 F N PLF RGI G+ + RY P H+ RH FA + Sbjct: 227 FRKNG----PLFLSHLKRGISVS----GIRSQLKTFAYRYHLDPKVVYPHSFRHRFAKNF 278 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIY 298 + NGGD+ + ++LGH + TT+IY Sbjct: 279 IENGGDIAFLSNLLGHTSIETTRIY 303 >gi|163943257|ref|YP_001642487.1| site-specific tyrosine recombinase XerS [Bacillus weihenstephanensis KBAB4] gi|163865454|gb|ABY46512.1| integrase family protein [Bacillus weihenstephanensis KBAB4] Length = 357 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 68/304 (22%), Positives = 126/304 (41%), Gaps = 42/304 (13%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK---------RRTQKIGD 85 TL +Y D R F +L +E+ I + I+ +S++++ K + Q + + Sbjct: 43 TLLNYVYDFRVFFNWLL--SEQIIEFKPIKDISFSDLENLKKKDVENFMRFLKLQQNMQN 100 Query: 86 RSLKRSLSGIKSFLKYL------------------KKRKITTESNILNMRNLKKSNSLPR 127 S+ R +S +KS KYL K +I + LN R + + + Sbjct: 101 SSVNRKISALKSLFKYLTSLSENDDGECYFYRNVMAKIEIHKDKETLNARAKRMRSKIFH 160 Query: 128 ALNEKQALTLV--DNVLLHTSHETKWI---DARNSAILYLLYGCGLRISEALSLTPQNIM 182 ++++ L + ++ T H+ + R+ AIL L G G+R+SE L ++I Sbjct: 161 NDDDQEFLNYIKYEHEKSLTKHQLFYFLRDKDRDVAILSLFLGSGIRVSELADLRMEDIN 220 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKP 237 + + + KG+K V + P + +Y ++ P N+ L ++ +P Sbjct: 221 LKERLIDVIRKGNKEDSVWITPIALNDLEKYMEIRDKKYAPGKELKNVFLSKYKHT-AQP 279 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L+ Q + + + G +S H LRH+ A L D + LGH T + Sbjct: 280 LSVRAIQDIVEKYTKAFGKRMS--PHKLRHTLANKLYMEEKDSLQVMQQLGHTSQDTALL 337 Query: 298 YTNV 301 YT + Sbjct: 338 YTQL 341 >gi|261248380|emb|CBG26217.1| bacteriophage integrase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] Length = 340 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 67/308 (21%), Positives = 118/308 (38%), Gaps = 40/308 (12%) Query: 8 EIVSFELLKERQNWLQNLEIERGLSKLTLQSYEC--------DTRQFLIFLAFYTEEKIT 59 E ++FE K + W + E R L +L Y + R+ + AF + Sbjct: 34 EALAFEQHKIQHPWQEEKEDRRSLKELIDSWYSAHGITLKDGEKRKLAMHHAFDCMGEPL 93 Query: 60 IQTIRQLSYTEIRA------FISKRRTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESN 112 + ++ R + R +++ R+L L+ ++ L + + E+ Sbjct: 94 ARDFDAQMFSRYREKRLKGDYARSNRVKEVSPRTLNLELAYFRAVFNELNRLGEWKGENP 153 Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172 + NMR + L ++Q L+D H + +++ + G R SE Sbjct: 154 LKNMRPFRTEEMEMAWLTKEQIAALLDECKRHEHPDL-------VSVVKICLATGARWSE 206 Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232 A L + + T KG K R VP+ E Y+ P LF+ Sbjct: 207 AEGLKKSQLSKYKITYNYT-KGKKNRTVPISK-------ELYEELP--AKNKEHGSLFQN 256 Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 G F+ ++ R + LP H LRH+FA+H + NGG++ +Q +LGH + Sbjct: 257 CYG------AFRSALQ--RTNIELPAGQLTHVLRHTFASHFMMNGGNILVLQRVLGHTDI 308 Query: 293 STTQIYTN 300 T Y + Sbjct: 309 KMTMRYAH 316 >gi|227497529|ref|ZP_03927757.1| site-specific tyrosine recombinase XerC [Actinomyces urogenitalis DSM 15434] gi|226833010|gb|EEH65393.1| site-specific tyrosine recombinase XerC [Actinomyces urogenitalis DSM 15434] Length = 149 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 1/125 (0%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ-TIRQLSYTEIRAFIS 76 RQ+W + L ++RG S+ T+++Y D L FL E + + L ++RA+++ Sbjct: 13 RQSWERYLRLQRGRSEHTVRAYIGDLDDLLTFLGVGPGEDEGVGPALSSLDLADLRAWLA 72 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 +L R S ++SF + ++ + +R + N LP L+++QA Sbjct: 73 DLSASGHARATLARRGSALRSFSTWAWRQGLLASDVAARLRTPRADNRLPTVLSQEQATA 132 Query: 137 LVDNV 141 L+D Sbjct: 133 LLDAA 137 >gi|302384970|ref|YP_003820792.1| integrase family protein [Clostridium saccharolyticum WM1] gi|302195598|gb|ADL03169.1| integrase family protein [Clostridium saccharolyticum WM1] Length = 286 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 91/193 (47%), Gaps = 21/193 (10%) Query: 116 MRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET-KWIDARNSAILY-----LLYGCGLR 169 M +LK S+S + +Q T ++NV+ +E K R+ +LY + G+R Sbjct: 87 MESLKLSSSKMLMIRIQQK-TFLENVISQADYEYLKKCLIRSGNMLYYFVIRFMAATGVR 145 Query: 170 ISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL 229 +SE + + +++ + I K +KIR + + S+R L++ L D + + Sbjct: 146 VSELVQIKVEHV--KCGHMDIYSKDNKIRRIYIPKSLRVDALKW--LNQID---RVSGYV 198 Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGL----PLSTTAHTLRHSFATHLLSNGGDLRSIQS 285 F G P+ P + QL+++ L P H+ RH FA + + N GD+ + Sbjct: 199 FLNRYGDPITPAGIRG---QLKKFTVLYDLDPNVVYPHSFRHRFAKNFIENCGDISMLSD 255 Query: 286 ILGHFRLSTTQIY 298 ILGH + TT+IY Sbjct: 256 ILGHESIETTRIY 268 >gi|268315977|ref|YP_003289696.1| integrase family protein [Rhodothermus marinus DSM 4252] gi|262333511|gb|ACY47308.1| integrase family protein [Rhodothermus marinus DSM 4252] Length = 320 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 60/237 (25%), Positives = 107/237 (45%), Gaps = 31/237 (13%) Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R +K+ S+ L+ ++ F +YL + E+ ++ ++ +S R++ + + Sbjct: 79 REKKLHQVSVSTYLTALRRFCQYLVDIGLLPENPARTVKGNRRPSSHSRSVLTR---VEI 135 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL----RIQGKG 194 + +L +T I R+ AI++++ GL E + +++ DQ+ L R+QGKG Sbjct: 136 EQLLAVLDQDTSQIGLRDRAIVHMMLFAGLSEVEIVRADVRDL--DQTLLGWYLRVQGKG 193 Query: 195 D--KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG----------IRGKPLNPGV 242 K + VPL P V +A+ Y LN ++PL G G+ LN Sbjct: 194 HTAKDQQVPLDPPVVEALQAY---------LNTRVPLHPGEPLFVSHGHRSEGQRLNTRS 244 Query: 243 FQRYIRQLRRYLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + I+Q G+ T H+L H+ A L+ G + +Q + H L TT IY Sbjct: 245 VRSRIKQHLEAAGITRRGVTPHSLTHTAALIWLNQGMSIEEVQRRMRHGTLETTMIY 301 >gi|313903971|ref|ZP_07837351.1| integrase family protein [Eubacterium cellulosolvens 6] gi|313471120|gb|EFR66442.1| integrase family protein [Eubacterium cellulosolvens 6] Length = 361 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/224 (21%), Positives = 101/224 (45%), Gaps = 13/224 (5%) Query: 84 GDRSLKRSLSGIKSFLKYLKKRKI--TTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 G++ +K+ +S ++ F Y K ++ T + +++M L + + L+ + L+D V Sbjct: 116 GEKGIKQKMSALRVFYAYYYKHEMIRTNPTVLVDMPKLHEKEIIR--LDADEVADLLDFV 173 Query: 142 L-----LHTSHETKWIDA--RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 L + W + R++AI+ LL G G+R+SE + L +++ + +++ KG Sbjct: 174 ESCGEELSPHQRSYWEKSKLRDTAIITLLLGTGIRVSECVGLDLEDVDFRNNGIKVFRKG 233 Query: 195 DKIRIVPLLPSVRKAILEYYDL--CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 +V V A+ Y + + LF + + +N + +++ Sbjct: 234 GNEMMVYFGGEVESALKAYIETERAAITPQQGHEHALFYSAQRRRINVKSVENLVKKYTS 293 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + T H LR ++ T L GD+ + +LGH ++TT+ Sbjct: 294 RITSTKKITPHKLRSTYGTALYRETGDIYLVADVLGHKDVNTTK 337 >gi|259503501|ref|ZP_05746403.1| phage integrase [Lactobacillus antri DSM 16041] gi|259168579|gb|EEW53074.1| phage integrase [Lactobacillus antri DSM 16041] Length = 308 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 70/154 (45%), Gaps = 12/154 (7%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVR 207 D + + +L GLR +E L +T +I D+ T+ I D P SVR Sbjct: 132 DGTYTNFIDVLLRTGLRFAEGLGVTMNDIDFDKHTISINKTWDYKADSGFQPTKNASSVR 191 Query: 208 KAILEYYDLCPFDLN---LNIQLPLFRG--IRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 ++ Y L F N + P+FRG IR V ++ + GLP+ T Sbjct: 192 TIEVDDYTLRCFKRNAEGIKNDEPIFRGAGIRYNSTVNDVLKKIQSKYLHLSGLPI--TV 249 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 H LRH+ A+ L++N ++S+ S LGH TTQ Sbjct: 250 HGLRHTHASFLIANRVSIQSVASRLGHADTITTQ 283 >gi|229188200|ref|ZP_04315278.1| Tyrosine recombinase [Bacillus cereus BGSC 6E1] gi|228595276|gb|EEK53018.1| Tyrosine recombinase [Bacillus cereus BGSC 6E1] Length = 358 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 69/304 (22%), Positives = 125/304 (41%), Gaps = 42/304 (13%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK---------RRTQKIGD 85 TL +Y D R F +L +E+ I + I+ +S++++ K + Q + + Sbjct: 43 TLLNYVYDFRVFFNWLL--SEQIIEFKPIKDISFSDLENLKKKDVENFMRFLKLQQNMQN 100 Query: 86 RSLKRSLSGIKSFLKYL------------------KKRKITTESNILNMRNLKKSNSLPR 127 S+ R +S +KS KYL K +I LN R + + + Sbjct: 101 SSVNRKISALKSLFKYLTSLSENEDGECYFYRNVMAKIEIHKNKETLNARAKRMRSKIFH 160 Query: 128 ALNEKQALTLV--DNVLLHTSHETKWI---DARNSAILYLLYGCGLRISEALSLTPQNIM 182 ++++ L V ++ T H+ + R+ AIL L G G+R+SE L ++I Sbjct: 161 NDDDQEFLNYVKYEHEKSLTKHQLFYFLRDKDRDVAILSLFLGSGIRVSELADLRMEDIN 220 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKP 237 + + + KG+K V + P + +Y ++ P N+ L ++ +P Sbjct: 221 LKERLIDVIRKGNKEDSVWITPIALNDLEKYMEIRVNKYAPGKELKNVFLSKYKHT-AQP 279 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L+ Q + + + G +S H LRH+ A L D + LGH T + Sbjct: 280 LSVRAIQDIVEKYTKAYGKKMS--PHKLRHTLANKLYMEEKDSLQVMQQLGHTSQDTALL 337 Query: 298 YTNV 301 YT + Sbjct: 338 YTQL 341 >gi|153808662|ref|ZP_01961330.1| hypothetical protein BACCAC_02961 [Bacteroides caccae ATCC 43185] gi|149128488|gb|EDM19706.1| hypothetical protein BACCAC_02961 [Bacteroides caccae ATCC 43185] Length = 397 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 47/161 (29%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219 L+ C GLR S+ +LT NI++ Q + + SV+ I Sbjct: 239 FLFCCYAGLRYSDFTNLTSANIVEFQQETWL-----------IYKSVKTGI--------- 278 Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST------------------- 260 ++LPL+ GK ++ + QRY L R+ L ++ Sbjct: 279 ----EVRLPLYLLFEGKGIH--ILQRYKDDLNRFFKLKDNSNINKELNILGKLAEIDKRI 332 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + HT RH+ AT L+ +G ++ ++Q +LGH + TTQ+Y N+ Sbjct: 333 SFHTARHTNATLLIYSGANITTVQKLLGHKSVKTTQVYANI 373 >gi|302346798|ref|YP_003815096.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] gi|302150347|gb|ADK96608.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] Length = 421 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 62/185 (33%), Positives = 82/185 (44%), Gaps = 30/185 (16%) Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTL 188 E+ ALT D L + + +D N L L GC GL S+ L MDD TL Sbjct: 219 ERNALTSDDLHKLLSYRPHRSVD--NHCRLIFLLGCFTGLAFSDLKKLR----MDDVYTL 272 Query: 189 R--------IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240 + K IVPLLP + + D L LFR P N Sbjct: 273 DDGRRYISLCRTKTQNRSIVPLLPIAEEILTIVSDGQKEGL-------LFREF---PTNS 322 Query: 241 GVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQI 297 F R IR + GLP T T+HT RH+FAT + L NG + ++ +LGH +STT++ Sbjct: 323 H-FNRKIRDIIIKAGLPSHTEATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEL 381 Query: 298 YTNVN 302 Y V+ Sbjct: 382 YAKVS 386 >gi|301308505|ref|ZP_07214459.1| integrase [Bacteroides sp. 20_3] gi|300833975|gb|EFK64591.1| integrase [Bacteroides sp. 20_3] Length = 210 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 22/154 (14%) Query: 161 YLLYGC--GLRISEALSLTPQNIMDD----------QSTLRIQGKGDKIRIVPLLPSVRK 208 YL C GL S+ SL +N++ D + L + K I +PLLP V Sbjct: 48 YLPLCCFTGLAFSDVASLNKENLVQDNLGDWWIRKGRVKLEHRRKASSISNIPLLP-VPL 106 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 AILE Y P + LP+ + Y++++ + G+ + T H RH+ Sbjct: 107 AILEKYKEHPTCIKKGCCLPVMCNQK--------MNSYLKEIADFCGIKKNLTTHVARHT 158 Query: 269 FATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 F T + L+N L+ + +LGH TQ Y V Sbjct: 159 FGTTVTLANNVPLQDVSVMLGHASTRMTQHYARV 192 >gi|228911726|ref|ZP_04075500.1| Tyrosine recombinase [Bacillus thuringiensis IBL 200] gi|228847955|gb|EEM92835.1| Tyrosine recombinase [Bacillus thuringiensis IBL 200] Length = 373 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 69/304 (22%), Positives = 126/304 (41%), Gaps = 42/304 (13%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK---------RRTQKIGD 85 TL +Y D R F +L +E+ I + I+ +S++++ K + Q + + Sbjct: 58 TLLNYVYDFRVFFNWLL--SEQIIEFKPIKDISFSDLENLKKKDVENFMRFLKLQQNMQN 115 Query: 86 RSLKRSLSGIKSFLKYL------------------KKRKITTESNILNMRNLKKSNSLPR 127 S+ R +S +KS KYL K +I + LN R + + + Sbjct: 116 SSVNRKISALKSLFKYLTSLSENDEGECYFYRNVMAKIEIHKDKETLNARAKRMRSKIFH 175 Query: 128 ALNEKQALTLV--DNVLLHTSHETKWI---DARNSAILYLLYGCGLRISEALSLTPQNIM 182 ++++ L V ++ T H+ + R+ AIL L G G+R+SE L ++I Sbjct: 176 NDDDQEFLNYVKYEHEKSLTKHQLFYFLRDKDRDVAILSLFLGSGIRVSELADLRMEDIN 235 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKP 237 + + + KG+K V + P + +Y ++ P N+ L ++ +P Sbjct: 236 LKERLIDVIRKGNKEDSVWITPIALNDLEKYMEIRDNKYAPGKELKNVFLSKYKHT-AQP 294 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L+ Q + + + G +S H LRH+ A L D + LGH T + Sbjct: 295 LSVRAIQDIVEKYTKAYGKRMS--PHKLRHTLANKLYMEEKDSLQVMQQLGHTSQDTALL 352 Query: 298 YTNV 301 YT + Sbjct: 353 YTQL 356 >gi|154488695|ref|ZP_02029544.1| hypothetical protein BIFADO_02002 [Bifidobacterium adolescentis L2-32] gi|154082832|gb|EDN81877.1| hypothetical protein BIFADO_02002 [Bifidobacterium adolescentis L2-32] Length = 323 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 56/245 (22%), Positives = 107/245 (43%), Gaps = 23/245 (9%) Query: 66 LSYTEIRAFISK-RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 ++ +IR ++++ R ++G ++ I S +L++ +S + ++ ++ S Sbjct: 87 ITTDDIRDYLTRYSRDGRVGKTTIDNIRRVISSCFSWLEEEDYIYKSPVRRIKKIRTSRM 146 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 L +++ L D ET R+ A++ LL G+R+ E + L ++I D Sbjct: 147 LKPVYSDESLEQLRD-----ACKET-----RDLAMIDLLTSTGIRVGELVQLNRRDIDFD 196 Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN----P 240 + GKGDK R V + +L Y + ++ + LF + +P Sbjct: 197 ARECVVHGKGDKERRVYFDARAKTHLLVY-----LEQRMDDEPALFVSLH-RPFKRLEIS 250 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 GV R +R+L G+ H R + AT + G + +Q +LGH ++ TT Y Sbjct: 251 GVEAR-LRKLGDDSGVK-HVHPHKFRRTLATKAIDKGMPIEQVQVLLGHSKIDTTLCYAQ 308 Query: 301 VNSKN 305 V+ N Sbjct: 309 VDQDN 313 >gi|284931854|gb|ADC31721.1| truncated tyrosine recombinase IntI2 [Escherichia coli] gi|284931857|gb|ADC31723.1| tyrosine recombinase IntI2 [Escherichia coli] gi|284931868|gb|ADC31728.1| truncated tyrosine recombinase IntI2 [Escherichia coli] Length = 58 Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 23/37 (62%), Positives = 29/37 (78%) Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 RHSFATHLL G D+R++Q +LGH + TTQIYT+V Sbjct: 1 FRHSFATHLLQAGRDIRTVQELLGHNDVKTTQIYTHV 37 >gi|296169729|ref|ZP_06851346.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895626|gb|EFG75323.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 325 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 67/148 (45%), Gaps = 28/148 (18%) Query: 166 CGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223 GLR +E + +++ D +L + GKG K R+ PL + L Sbjct: 141 AGLRRAEVALVHSDDLIRDLHGWSLIVHGKGGKQRVAPL-----------------NDGL 183 Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG------LPLSTTAHTLRHSFATHLLSNG 277 +L F G L PG +I ++G +P + H LRH FAT S Sbjct: 184 TAELRAFCTSHGY-LFPGQVDGHISA--EWVGTVISRLMPPGWSMHKLRHRFATLGYSGT 240 Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKN 305 G+LR++Q LGH ++TTQ YT V+++ Sbjct: 241 GNLRAVQEALGHASVATTQRYTAVSTRE 268 >gi|291514097|emb|CBK63307.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 414 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 74/158 (46%), Gaps = 27/158 (17%) Query: 162 LLYGC--GLRISEALSLTPQNIMDD------QSTLRIQGKGDKIRIVPLLPSVRKAILEY 213 L+ C GL + +LTPQ+I D +T R G +RI + ++ +L+Y Sbjct: 249 FLFSCFTGLSYIDLCTLTPQHIQQDGKQLWISTTRRKTGSAVNVRIFAIPYTI---LLKY 305 Query: 214 YDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 P N I +LP + G + ++ G+P T H+ RH+FAT Sbjct: 306 K---PMQRNARIFRLP----------SNGWCNICLERIMSLAGIPRHITFHSARHTFATT 352 Query: 273 L-LSNGGDLRSIQSILGHFRLSTTQIYTNV-NSKNGGD 308 + LS G + +I +LGH + TTQIY + +SK GD Sbjct: 353 ITLSQGMAIETISKLLGHKNIRTTQIYATITHSKLDGD 390 >gi|83749979|ref|ZP_00946929.1| Hypothetical Protein RRSL_00056 [Ralstonia solanacearum UW551] gi|83723354|gb|EAP70582.1| Hypothetical Protein RRSL_00056 [Ralstonia solanacearum UW551] Length = 566 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 71/303 (23%), Positives = 116/303 (38%), Gaps = 42/303 (13%) Query: 27 IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 IERG LS LT + D + FL + + + R + + R F T + Sbjct: 256 IERGRPLSSLTTE----DAIAYRGFLRHPSPHERWVGPARPRASADWRPF-----TDGLS 306 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 RS+ SLS + + ++L +++ + ++ + AL+ A T + L+ Sbjct: 307 ARSIAYSLSVLGAMFRWLVQQRYVLANPFAGIK--VRGGGRTAALDASHAFTEGEWALVR 364 Query: 145 T-SHETKW-------IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGK 193 T + +W R +L Y GLR SE + + D+ L + GK Sbjct: 365 TIADGLEWSYGWEAPAAQRLRFVLDFAYATGLRASELIGARLSGVETDRQGDHWLSLIGK 424 Query: 194 GDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 G + V L P R A+ Y L N Q PL + P R + Sbjct: 425 GGRAGKVALPPLARTALDRYLVERGLPVTRARWNPQTPLIGALGLDPDGGITGSRLWSVV 484 Query: 251 RRYLGLPLS---------------TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 RR+ + H +RH+ A+H L+ G +L +++ L H +STT Sbjct: 485 RRFFWAAADIIEGDHTVLAEKLRKASPHWMRHTHASHALARGAELTTVRDNLRHASISTT 544 Query: 296 QIY 298 IY Sbjct: 545 SIY 547 >gi|325000085|ref|ZP_08121197.1| integrase family protein [Pseudonocardia sp. P1] Length = 378 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 103/230 (44%), Gaps = 40/230 (17%) Query: 83 IGDRSLKRSLSGIKSFLKYLKK--RKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + DRS + + +++ +K+++ R + I R+ +LPR ++ VD Sbjct: 118 VTDRSAAMAPTTLRALVKFVRSVFRAAVDDHRI--ARSPFVRITLPRHEPDRIVPLTVDQ 175 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK---I 197 V T E + AR+ A++ G GLRI E L+L ++ + T R++ + D+ Sbjct: 176 V--RTLAEA--VPARHRALVLAQAGLGLRIGELLALRVVDVDFLRRTARVEHQIDRRTRD 231 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-------------LFRGIRGKPL-----N 239 R+ P P R+ I P + + L +F G+PL + Sbjct: 232 RVPPKTPRSRRTI-------PLPNVVGVALAEHLAEYGPAADGLIFHTAEGRPLLQEYVS 284 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289 VF R +R+ LP STT+H LRH +A+ LL+ G + ++ LGH Sbjct: 285 RNVFGRAVRRT----DLPASTTSHDLRHHYASILLAAGESVLAVAERLGH 330 >gi|297527277|ref|YP_003669301.1| integrase family protein [Staphylothermus hellenicus DSM 12710] gi|297256193|gb|ADI32402.1| integrase family protein [Staphylothermus hellenicus DSM 12710] Length = 333 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 15/166 (9%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAIL 211 D + IL++L GLR E L + +I + T+ + K DK R V + + I Sbjct: 141 DPLDKLILFILLDTGLRSKELLGIRVSDIDFENRTITVTSTKYDKERKVLVTSRTIELIR 200 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-STTAHTLRHSFA 270 + +L NL + L PL + I++L + G+P+ H LRH+FA Sbjct: 201 SWIELK----NLGKEDRLI------PLTYSGLYKRIKRLGKRAGIPVWKIRPHILRHTFA 250 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNV---NSKNGGDWMMEI 313 T L G L +Q +LGH + TTQ+Y +V + ++ D +ME+ Sbjct: 251 TQALKKGLSLPYLQRLLGHSDIKTTQVYLHVTVDDIRSEYDKVMEV 296 >gi|160873093|ref|YP_001557098.1| integrase family protein [Shewanella baltica OS195] gi|160858615|gb|ABX51838.1| integrase family protein [Shewanella baltica OS195] Length = 210 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 78/174 (44%), Gaps = 30/174 (17%) Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQG------------KGDKIRIVPLLPSVRK 208 ++L+ CG R SEAL++TP+ +M + ST+ IQ K + R VP+ P Sbjct: 46 HVLHYCGCRPSEALAITPRRVMINDSTIVIQSLKKHKTDQQGRLKQAQYRSVPVPP---- 101 Query: 209 AILEYYDLCPFDL------NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 ++E+ DL F L +L I PL+ R P ++ R + R + T Sbjct: 102 PLIEHLDLV-FGLRSQLRRDLVIDAPLWLMSR-----PTAYRLVKRVMDRAGIVGPQATG 155 Query: 263 HTLRHSFATHLLSNGG--DLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314 LRH F L++ L I ++GH TT+IY V S+ +M + Sbjct: 156 KGLRHGFGVALVTANPPVPLHVISQLMGHSDSKTTEIYLQVLSEERHSLVMNAW 209 >gi|23466323|ref|NP_696926.1| phage family integrase [Bifidobacterium longum NCC2705] gi|317481754|ref|ZP_07940784.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA] gi|322689710|ref|YP_004209444.1| phage integrase [Bifidobacterium longum subsp. infantis 157F] gi|23327078|gb|AAN25562.1| phage family integrase [Bifidobacterium longum NCC2705] gi|316916802|gb|EFV38194.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA] gi|320461046|dbj|BAJ71666.1| phage integrase [Bifidobacterium longum subsp. infantis 157F] Length = 309 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 18/149 (12%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEY 213 ++ L+ GLR SEAL LTP + TL + + +P SVRK L++ Sbjct: 142 LILLVAKTGLRFSEALGLTPDDFDFVHQTLSVNKTWNYKNGGGFVPTKNASSVRKVQLDW 201 Query: 214 YDLCPFDL---NLNIQLPLFRGIRGKPLNP---GVFQRYIRQLRRYLGLPLSTTAHTLRH 267 + + NL P+F + GK N G+ R+ +Q G+P+ + H LRH Sbjct: 202 QLIMQLSVLLKNLPDDKPIF--VNGKVYNSTANGILARHCKQA----GVPV-ISIHGLRH 254 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + A+ LL G + S+ LGH ++TTQ Sbjct: 255 THASLLLFAGVSIASVSKRLGHASMNTTQ 283 >gi|237714827|ref|ZP_04545308.1| site-specific recombinase [Bacteroides sp. D1] gi|262406900|ref|ZP_06083449.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294646188|ref|ZP_06723843.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294810609|ref|ZP_06769260.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|229445152|gb|EEO50943.1| site-specific recombinase [Bacteroides sp. D1] gi|262355603|gb|EEZ04694.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292638483|gb|EFF56846.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294442202|gb|EFG11018.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] Length = 397 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 19/144 (13%) Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225 CGLR+S+ L ++ +RI+ K K + PL + L++ Sbjct: 254 CGLRVSDIRKLKWNDLQKSGERIRIEIKMQKTK-EPLYLPISDEALKW------------ 300 Query: 226 QLPLFRGIRGKPL-----NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280 LP +G L + G + +++ + G+ + H RH+ AT +L+ G DL Sbjct: 301 -LPQQNEAKGDDLIFPLTHEGTINKILQKWAKDAGIIKHISFHVARHTHATMMLTLGADL 359 Query: 281 RSIQSILGHFRLSTTQIYTNVNSK 304 ++ +LGH ++TTQIY + K Sbjct: 360 YTVSKLLGHKNIATTQIYAKIVDK 383 >gi|229082797|ref|ZP_04215228.1| Tyrosine recombinase [Bacillus cereus Rock4-2] gi|228700494|gb|EEL53049.1| Tyrosine recombinase [Bacillus cereus Rock4-2] Length = 373 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 69/304 (22%), Positives = 127/304 (41%), Gaps = 42/304 (13%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK---------RRTQKIGD 85 TL +Y D R F +L +E+ I ++ I+ +S++++ K + Q + + Sbjct: 58 TLLNYVYDFRVFFNWLL--SEQIIELKPIKDISFSDLENLKKKDVENFIRFLKLQQNMQN 115 Query: 86 RSLKRSLSGIKSFLKYL------------------KKRKITTESNILNMRNLKKSNSLPR 127 S+ R +S +KS KYL K +I + LN R + + + Sbjct: 116 SSVNRKISALKSLFKYLTSLSENEDGECYFYRNVMAKIEIHKDKETLNARAKRMRSKIFH 175 Query: 128 ALNEKQALTLV--DNVLLHTSHETKWI---DARNSAILYLLYGCGLRISEALSLTPQNIM 182 ++++ L V ++ T H+ + R+ AIL L G G+R+SE L ++I Sbjct: 176 NDDDQEFLNYVKYEHEKSLTKHQLFYFLRDKDRDVAILSLFLGSGIRVSELADLRIEDIN 235 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKP 237 + + + KG+K V + P + +Y ++ P N+ L ++ +P Sbjct: 236 LKERLIDVIRKGNKEDSVWITPIALNDLEKYIEIRDNKYAPGKELKNVFLSKYKHT-AQP 294 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L+ Q + + + G +S H LRH+ A L D + LGH T + Sbjct: 295 LSVRAIQDIVEKYTKAYGKRMS--PHKLRHTLANKLYMEEKDSLQVMQQLGHTSQDTALL 352 Query: 298 YTNV 301 YT + Sbjct: 353 YTQL 356 >gi|15614912|ref|NP_243215.1| hypothetical protein BH2349 [Bacillus halodurans C-125] gi|10174969|dbj|BAB06068.1| BH2349 [Bacillus halodurans C-125] Length = 223 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/203 (22%), Positives = 96/203 (47%), Gaps = 19/203 (9%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 ++LKE + Q R +K T+ + + Q FL E K I + + + +++ Sbjct: 5 DVLKEYEYHCQ----ARNFTKKTMTNKRQEYNQLKQFL----ETKRGITELESIYHQDLK 56 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 ++I ++ + +S+ IK+F + + E+ + + +LP+ E Sbjct: 57 SYIRSKQMSGLKPQSIHAIAKQIKAFFNWCVSEEYLKENPMDKV-------ALPKVPKEV 109 Query: 133 QALTLVDNV--LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 D V ++ + +++ RN AI+ ++ CGLR E L N+ D + +++ Sbjct: 110 LTGLTTDEVVKMMDSFKGDSYLEIRNKAIIAMMSDCGLRAMEIAGLKECNVRD--TDIKV 167 Query: 191 QGKGDKIRIVPLLPSVRKAILEY 213 GKG+K R+V + P+++K +L+Y Sbjct: 168 FGKGNKERMVFISPALKKILLKY 190 >gi|319954949|ref|YP_004166216.1| integrase family protein [Cellulophaga algicola DSM 14237] gi|319423609|gb|ADV50718.1| integrase family protein [Cellulophaga algicola DSM 14237] Length = 212 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 55/172 (31%), Positives = 79/172 (45%), Gaps = 24/172 (13%) Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV- 200 LL S +T++ RN +L + Y GLR+SEA+++ ++ +S + I + + Sbjct: 49 LLAASKKTRY-PKRNYLLLLMTYRHGLRVSEAIAIKKSDVNIKESRIWINRLKSGLSVEH 107 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 P+ +AI Y + + LP LF RG PL RQ Y+ ++ Sbjct: 108 PISGDELRAIKRYLN------SREDNLPWLFVNERGLPLT--------RQAINYIVNVIA 153 Query: 260 TTA-------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 T A HTLRHS +L + G DLR IQ LGH T YT V SK Sbjct: 154 TAAKLENVHPHTLRHSCGFYLANKGYDLRLIQDYLGHRDPKHTAHYTRVVSK 205 >gi|221195298|ref|ZP_03568354.1| DNA integration/recombination/invertion protein [Atopobium rimae ATCC 49626] gi|221185201|gb|EEE17592.1| DNA integration/recombination/invertion protein [Atopobium rimae ATCC 49626] Length = 401 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 70/160 (43%), Gaps = 20/160 (12%) Query: 161 YLLYGCGLRISEALSLTPQNIMDDQSTLRIQG----------------KGDKIRIVPLLP 204 +L G+R E +L Q++ Q + + G KG + R V + Sbjct: 216 WLALKTGMRCGEVCALRRQDVNHMQRYIHVSGTVIEEPRRQPYRRDVTKGRRHRNVSITD 275 Query: 205 SVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 + I Y L + + I+ PL + G + P LRR L LP T Sbjct: 276 ADLALIDRYSQLQGKRMGVAIKGATPLV-SVTGAFMRPTKVSSAFTALRRSLELPAGITF 334 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301 HTLRH+ A+ L+NG DL+++ LGH +TT +IY +V Sbjct: 335 HTLRHTHASWCLANGVDLKTLSERLGHADEATTLRIYAHV 374 >gi|303235823|ref|ZP_07322427.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302483965|gb|EFL46956.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 245 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/209 (24%), Positives = 94/209 (44%), Gaps = 35/209 (16%) Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMD 183 PR++ +++ ++D E +W + R L++ + C GL IS+ +L +NI+ Sbjct: 61 PRSITQEELEHIID-------LEIEWENYRIVRDLFV-FSCFTGLAISDVRNLREENIVT 112 Query: 184 DQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-- 238 ++ L I+G+ K + V +LP + Y RGIR + Sbjct: 113 EEGKLCIKGRRMKTKTPYRVQVLPPALTIMNRY-----------------RGIRAGFVFD 155 Query: 239 --NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTT 295 + + ++R +G+ T H RH+FA+ + LS G + ++ +LGH L TT Sbjct: 156 VPTTDIILNGMHHIQRNIGMETPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTT 215 Query: 296 QIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 Q+Y V+S+ M I + + T K Sbjct: 216 QVYAAVSSERIHRDMQAIQQRIQDTFTLK 244 >gi|296162872|ref|ZP_06845653.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295886909|gb|EFG66746.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 337 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 64/285 (22%), Positives = 122/285 (42%), Gaps = 27/285 (9%) Query: 34 LTLQSYECDTRQFLIFLAFYTEE---KITIQTIRQLSYTEIRAFIS---KRRTQKIGDRS 87 L+ Q+ C L+FL F + + T + + I AF+ + R + R+ Sbjct: 30 LSPQTVACYRDALLLFLHFACRQLGKEPTTMRLADIQPNLILAFLDYLEQDRKNSVRSRN 89 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL---TLVDNVLLH 144 L+ L+ +++FLK+ +R ++ ++ ++++ ++P E+ L T + V + Sbjct: 90 LR--LTALRAFLKFAGRR------DVASLHCVERALAVPMKRFERPMLNYLTRAEMVAVL 141 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN-IMDDQSTLRIQGKGDKIRIVPLL 203 W R+ +L +LY G R+SE + + + ++D + + ++GKG K+R +PL Sbjct: 142 GQPGESWSSRRDHLLLTMLYNTGARVSEIIGVRVVDVVLDGAACVHLRGKGRKLRSIPLW 201 Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYLG-----LP 257 + + E + + + L G+ ++ V QR + R L Sbjct: 202 DAT---VAEIRSWLRSNSAMRGEAALLPNRDGQAMSRSNVAQRLDLAVSRASVEQPSLLK 258 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + H LRH+ A HLL I LGH TT Y + Sbjct: 259 KRISPHILRHTTAMHLLQADVPFNVIALWLGHESPMTTHRYVEAD 303 >gi|154423273|gb|ABS81541.1| putative phage integrase [Alcaligenes sp. NyZ215] Length = 443 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 72/303 (23%), Positives = 121/303 (39%), Gaps = 42/303 (13%) Query: 27 IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 +ERG LS LT + D + FL T + + R S + R F + + Sbjct: 133 VERGRALSSLTTE----DAIAYRAFLRRPTPRERWVGPPRARSAPDWRPF-----ARALS 183 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 RS +LS + + ++L +++ + ++ ++ AL+ + T + +L+ Sbjct: 184 ARSTAYALSVLGALFRWLIEQRYVLANPFAGIKVRGRTRVA--ALDTSRGFTEGEWLLVR 241 Query: 145 T-SHETKW---IDARNSA----ILYLLYGCGLRISEALSLTPQNIMDDQS---TLRIQGK 193 T + +W DA + IL Y GLR SE + +I D+ L + GK Sbjct: 242 TIADGLEWSYGWDASAAQRLRFILDFAYATGLRASELVGAALGDIHVDEHHDHWLHLIGK 301 Query: 194 GDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 G + V L P R A+ +Y L + + PL + R + Sbjct: 302 GSRPGKVALPPLARSALDQYLVQRGLPVTPARWDPKTPLLASLEQDSAASITGTRLWHVM 361 Query: 251 RRYLGLPLSTTA---------------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 RR+ G A H +RH+ ATH L+ G +L S++ L H ++TT Sbjct: 362 RRFFGQAADVIAPDNPTVAEKLRRASPHWMRHTHATHALARGAELTSVRDNLRHASVATT 421 Query: 296 QIY 298 IY Sbjct: 422 SIY 424 >gi|67925842|ref|ZP_00519134.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera watsonii WH 8501] gi|67852313|gb|EAM47780.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera watsonii WH 8501] Length = 290 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 68/273 (24%), Positives = 114/273 (41%), Gaps = 38/273 (13%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 SKLT Q Y+ + +QF+ F+ EE + +I F+ + ++K Sbjct: 23 SKLTRQHYQSNIKQFIRFIGLSLEE---------VKIEDINGFVRMLELKGNKPSTIKGK 73 Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET-- 149 LS +KS + K T N+ L KS P+ +N++ A ++ HE Sbjct: 74 LSTVKSLFSFAYKVGYLTS----NVTVLVKS---PK-VNKRTASMRIE-------HEDIR 118 Query: 150 KWIDARNSA----ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 K +D NS I+ +++ GLR+SE L L + Q+ + I GKG+K R S Sbjct: 119 KMVDGTNSKRDRLIIKMMFFLGLRVSEVLRLKWSDFY--QNKVFISGKGNKER------S 170 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + + +L N + + L + +L++ LG+ + H Sbjct: 171 LNLPEELFLELSELKSEFNPTFVFTAYQKDEQLKRQAVNIMLNRLKKRLGIDANIHPHKF 230 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 RH + L NG D+ + LGH +S T+ Y Sbjct: 231 RHEHSMTSLDNGCDIHLLSRSLGHGSVSITESY 263 >gi|302669260|ref|YP_003832410.1| tyrosine recombinase XerC3 [Butyrivibrio proteoclasticus B316] gi|302396924|gb|ADL35828.1| tyrosine recombinase XerC3 [Butyrivibrio proteoclasticus B316] Length = 361 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 64/286 (22%), Positives = 125/286 (43%), Gaps = 40/286 (13%) Query: 45 QFLIFLAFYTEEK-----------ITIQTIRQLSYTEIRAF----ISKRRTQKIG----- 84 Q ++F Y +EK I + I L +I F S + K G Sbjct: 51 QDILFFYKYLKEKNPICRNLELRNIPFEVIENLGPQDINEFQNYVASGHKPDKTGNIKPA 110 Query: 85 -DRSLKRSLSGIKSFLKYLKKRKI----TTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 +R++ R ++ ++++ +Y+ K T ++ ++ +K + R L+ +Q L+D Sbjct: 111 NERAIARKMAAVRNYFQYMVKYDYLNADPTIKAVVKKKDPEKKDI--RRLDSEQVQKLID 168 Query: 140 NV------LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK 193 +V H+ ++ R+ I+ LL G+R+SE L ++ +++++ I K Sbjct: 169 SVENVNSASYHSRVMSEITAKRDLTIVTLLLNTGIRVSECAGLDLADVNFNENSITIVRK 228 Query: 194 G---DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGKPLNPGVFQRYIRQ 249 G D + I L +R + +Y L N + P LF ++ + ++ Q I + Sbjct: 229 GGYEDHLYINEL---IRNTLKDYIKNERPTLLENAEDPALFISLKHRRMSIRSIQHMIEK 285 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 + GL T H LR ++ T L + D+ + +LGH ++TT Sbjct: 286 YGKNTGLSQKLTPHKLRRTYGTALYNKTSDIYMVADVLGHKDVNTT 331 >gi|218260320|ref|ZP_03475692.1| hypothetical protein PRABACTJOHN_01354 [Parabacteroides johnsonii DSM 18315] gi|218224605|gb|EEC97255.1| hypothetical protein PRABACTJOHN_01354 [Parabacteroides johnsonii DSM 18315] Length = 397 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 21/172 (12%) Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 +D + L E K+ + + + L CGLR+S+ L ++ +RI+ K K Sbjct: 228 IDELKLLIGTECKYEIMKQAFLFSCL--CGLRVSDIRKLKWNDLQKSGERIRIEIKMQKT 285 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-----NPGVFQRYIRQLRR 252 + PL + L++ LP +G L + G + +++ + Sbjct: 286 K-EPLYLPISDEALKW-------------LPQQNEAKGDDLIFPLTHEGTINKILQKWAK 331 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 G+ + H RH+ AT +L+ G DL ++ +LGH ++TTQIY + K Sbjct: 332 DAGVIKHISFHVARHTHATMMLTLGADLYTVSKLLGHKNIATTQIYAKIVDK 383 >gi|210630774|ref|ZP_03296598.1| hypothetical protein COLSTE_00483 [Collinsella stercoris DSM 13279] gi|210160370|gb|EEA91341.1| hypothetical protein COLSTE_00483 [Collinsella stercoris DSM 13279] Length = 308 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 18/149 (12%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEY 213 ++ ++ GLR SEAL LTP++ TL + D +P SVRK L++ Sbjct: 141 LILIVAKTGLRFSEALGLTPEDFDFAHQTLSVNKTWDYKNGGGFVPTKNASSVRKVQLDW 200 Query: 214 ---YDLCPFDLNLNIQLPLFRGIRGKPLNP---GVFQRYIRQLRRYLGLPLSTTAHTLRH 267 L +L P+F ++GK N GV R+ + + G P+ + H LRH Sbjct: 201 QLIMQLSGLLKDLPPTEPIF--VKGKVYNSTANGVLARHCKNV----GAPV-ISVHGLRH 253 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + A+ LL G + S+ LGH ++TTQ Sbjct: 254 THASLLLFAGVSIASVSRRLGHASMTTTQ 282 >gi|260174248|ref|ZP_05760660.1| integrase protein [Bacteroides sp. D2] gi|315922519|ref|ZP_07918759.1| integrase [Bacteroides sp. D2] gi|313696394|gb|EFS33229.1| integrase [Bacteroides sp. D2] Length = 390 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 46/163 (28%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 A L+ Y GLR S+ +LT NI++ I + SV+ Sbjct: 238 AFLFCCYA-GLRYSDFTNLTSANIVEFHQETWI-----------IYKSVKTG-------- 277 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST----------------- 260 + ++LPL+ GK + + QRY L + L ++ Sbjct: 278 -----MEVRLPLYLLFEGKGIQ--ILQRYKDDLNSFFKLKDNSNINKELNILAGLAKIDK 330 Query: 261 --TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + HT RH+ AT LL NG ++ ++Q +LGH + TTQ+Y N+ Sbjct: 331 RVSFHTARHTNATLLLYNGANITTVQKLLGHKSVKTTQVYANI 373 >gi|257453044|ref|ZP_05618343.1| phage integrase family site specific recombinase [Fusobacterium sp. 3_1_5R] gi|317059582|ref|ZP_07924067.1| phage integrase [Fusobacterium sp. 3_1_5R] gi|313685258|gb|EFS22093.1| phage integrase [Fusobacterium sp. 3_1_5R] Length = 371 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 2/74 (2%) Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288 +F GI G+PL R + + + L +P + H++RHSFAT L ++++Q ++G Sbjct: 284 IFPGIDGQPLEVKKLPRRLAAICKKLNIP-HRSFHSIRHSFATRLFEKNVQIKTVQELMG 342 Query: 289 HFRLSTT-QIYTNV 301 H ++TT IYT+V Sbjct: 343 HSEIATTMDIYTHV 356 >gi|204600310|gb|ACI01670.1| integrase [Escherichia coli] Length = 298 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 37/160 (23%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207 LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198 Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 +A + F + + P +R + FQ Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284 R ++ G+ T HTLRHSFAT LL +G D+R++Q Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQ 298 >gi|257438451|ref|ZP_05614206.1| putative tyrosine recombinase XerC [Faecalibacterium prausnitzii A2-165] gi|257199030|gb|EEU97314.1| putative tyrosine recombinase XerC [Faecalibacterium prausnitzii A2-165] Length = 230 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 58/244 (23%), Positives = 106/244 (43%), Gaps = 32/244 (13%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 R +L + E R L+K +L++Y TR + FL E I + ++ IR + + Sbjct: 7 RDEFLYDCEC-RHLAKGSLRNYRAATRFLVDFL-----ELRRITELEEVKPHHIRDLMKE 60 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 ++ R + L +++ YL TE + ++ N + +Q T+ Sbjct: 61 KQDMGSTPRYINDLLKVWRTWFNYL-----VTEGYLD-----ERDNPAKKVKPLRQPKTI 110 Query: 138 VDNV-------LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 +D ++ T ++ RN I+ LL+ G+R +E + + P++I D ++ Sbjct: 111 IDTFTVDEMRRMIRFYDGTDFLSVRNKTIIMLLFDTGMRCNEMILMEPEDIKPDYILVK- 169 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQR 245 GKG K R+VP P++ K +++Y L L + P LF GKPL R Sbjct: 170 HGKGSKERVVPKSPALSKQLMKYRTLRDAYLK---EYPSRHKNLFLSKNGKPLTDEAVAR 226 Query: 246 YIRQ 249 ++ Sbjct: 227 MLKH 230 >gi|125624092|ref|YP_001032575.1| site-specific tyrosine recombinase XerS [Lactococcus lactis subsp. cremoris MG1363] gi|124492900|emb|CAL97861.1| tyrosine recombinase [Lactococcus lactis subsp. cremoris MG1363] gi|300070865|gb|ADJ60265.1| site-specific tyrosine recombinase XerS [Lactococcus lactis subsp. cremoris NZ9000] Length = 351 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 78/323 (24%), Positives = 131/323 (40%), Gaps = 51/323 (15%) Query: 31 LSKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIRAFISKRR---TQ 81 LS+ ++ Y D R++L +L ++IT+Q + ++ E+ F+ R Sbjct: 34 LSEASIYEYCLDFRKYLQWLLDGSITNHNQIKEITLQELENVTKHELEDFVLHERLRLES 93 Query: 82 KIGDRS----LKRSLSGIKSFLKYLKKRKITTESNILNMRNL-------KKSNSLP-RAL 129 K G + L R+++ IKS YL ++ N RN+ KKS +L RA Sbjct: 94 KCGSNAHTSALNRTIAAIKSLYNYLCEQTEDEHGNTYMTRNVSRLIHIRKKSETLHYRAA 153 Query: 130 NEKQALTLVDNV------LLHTSHETKWIDARNS---------AILYLLYGCGLRISEAL 174 + L L D + H + AR S AIL L GLR +E + Sbjct: 154 QLEGKLFLGDETKAFLEFVEHNYENSISNRARTSFKKNKIRDLAILSLFLSSGLRCAELV 213 Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF---- 230 + ++ + + + K K +VP+ K I +Y+ + ++ IQ Sbjct: 214 GINLDDLNLEAGKVSVMRKEGKKDVVPIAQFSHKYINDYF-VIRSSIDTEIQAFFITDYD 272 Query: 231 ---RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 R I +N V +Y + + T HTLRH+FAT L + + + L Sbjct: 273 QKIRKISNASINKLV-AKYSEAYK------VRVTPHTLRHTFATRLYNVSHSQVLVSNQL 325 Query: 288 GHFRLSTTQIYTNVNSKNGGDWM 310 GH T++YT++ S D + Sbjct: 326 GHSSTKPTELYTHIVSAEAKDAL 348 >gi|57237839|ref|YP_179087.1| phage integrase family site specific recombinase [Campylobacter jejuni RM1221] gi|57166643|gb|AAW35422.1| site-specific recombinase, phage integrase family [Campylobacter jejuni RM1221] Length = 223 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 86/189 (45%), Gaps = 21/189 (11%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTP 178 +KS LNE + + L +NVL + + ++ RNS ++ L+ GLRISEAL++ Sbjct: 33 EKSEEKLNYLNENEIIRL-NNVLEKEKAKKEVYNSFRNSLLIKLMLYGGLRISEALNVKL 91 Query: 179 ---QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235 + + D+ + I GKG K + + LEY F N+ + + G Sbjct: 92 CDFEEVDDEILKISIIGKGGKEQFAFIKKEEVDDELEY-----FKENIQDSDYIMQTSTG 146 Query: 236 KPLNPG-----VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290 K LN V Y + L GL H LRH+ A L + G +L IQ IL H Sbjct: 147 KHLNRSNAFLIVNNIYAKALISKKGL------HLLRHTLAMRLTAKGTNLVVIQKILRHA 200 Query: 291 RLSTTQIYT 299 L+TT IY Sbjct: 201 NLNTTTIYA 209 >gi|315644277|ref|ZP_07897447.1| hypothetical protein PVOR_02010 [Paenibacillus vortex V453] gi|315280652|gb|EFU43941.1| hypothetical protein PVOR_02010 [Paenibacillus vortex V453] Length = 348 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/162 (23%), Positives = 73/162 (45%), Gaps = 2/162 (1%) Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 + + + +W R+ I+ L+ GLR+ E +L I + ++ + +K R Sbjct: 162 FMKSPDQRQWAQWRDYVIMTLILDTGLRLGEICALEKMEIDFVKKSITLPASKNKNRKSR 221 Query: 202 LLP-SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 +LP S A L + + N + +F G+ L+ Q+ + L + Sbjct: 222 MLPLSTETARLLKQLIAETERNFDTTY-VFTTNYGEQLSEKTIQKSFDKYAEKAKLGRNV 280 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + H LRH+FAT NG + +Q ++GH ++TT+ Y ++ Sbjct: 281 SPHVLRHNFATMAAENGMSVFHLQKLMGHADIATTRKYVQIS 322 >gi|237718114|ref|ZP_04548595.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4] gi|229452535|gb|EEO58326.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4] Length = 390 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/162 (24%), Positives = 65/162 (40%), Gaps = 44/162 (27%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIR----------IVPL------- 202 ++ C GLR+S+ L P +I GKG+ I I+PL Sbjct: 240 FIFACFTGLRLSDMYRLAPMHIFKTAD-----GKGEYIDMEMQKTEKPVIIPLSEEAKRW 294 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 LP R + ++D+ P V R +R+ G+ + Sbjct: 295 LPKPRGNDIPFFDI--------------------PTTQTVIGRALRKWAEAAGIEKHISF 334 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 H+ RH+F T +L+ G DL + ++GH + TT+IY + K Sbjct: 335 HSSRHTFGTMMLTLGADLFTTSKLMGHSNIQTTEIYAKIVDK 376 >gi|325911644|ref|ZP_08174052.1| phage integrase, N-terminal SAM domain protein [Lactobacillus iners UPII 143-D] gi|325476630|gb|EGC79788.1| phage integrase, N-terminal SAM domain protein [Lactobacillus iners UPII 143-D] Length = 326 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 59/248 (23%), Positives = 108/248 (43%), Gaps = 25/248 (10%) Query: 64 RQLSYTEIRAFISK----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119 R ++ +IR ++S ++ K+ +++R LS SF +L+ + + + + Sbjct: 88 RYITTEDIREYLSNYQLNHKSSKVTIDNIRRILS---SFFSWLEDEDYILKIPVRRIHKV 144 Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 K S+ ++++ + D+ TK R+ AI+ +L G+R+ E + L Sbjct: 145 KTGQSIKETYSDEELEIMRDSC-------TK---IRDLAIIDMLASTGMRVGEMVLLNRD 194 Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239 ++ ++ + GKGDK RIV + K LE Y D + LF + Sbjct: 195 DVNFEERECMVFGKGDKERIV-YFDARTKLHLEKY----LDSRTDNNSALFTSLSAPHER 249 Query: 240 PGV--FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 G+ + +R+L LG+ H R + AT + G + +Q +LGH R+ TT Sbjct: 250 LGIAGIEARLRKLGGELGI-YKVHPHKFRRTLATKAIDKGMPIEQLQKLLGHQRIDTTLQ 308 Query: 298 YTNVNSKN 305 Y V N Sbjct: 309 YAMVKQSN 316 >gi|239736500|gb|ACS12989.1| class 1 integrase IntI1 [Pseudomonas aeruginosa] Length = 298 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 37/160 (23%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207 LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198 Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 +A + F + + P +R + FQ Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284 R ++ G+ T HTLRHSFAT LL +G D+R++Q Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQ 298 >gi|150004164|ref|YP_001298908.1| transposase [Bacteroides vulgatus ATCC 8482] gi|255012337|ref|ZP_05284463.1| transposase [Bacteroides sp. 2_1_7] gi|149932588|gb|ABR39286.1| transposase [Bacteroides vulgatus ATCC 8482] Length = 411 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 22/153 (14%) Query: 162 LLYGC--GLRISEALSLTPQNIMDD----------QSTLRIQGKGDKIRIVPLLPSVRKA 209 ++ C GL S+ +L+ +N++ D + L + K I +PLLP V A Sbjct: 250 FVFACFTGLAFSDVATLSGENLVQDNLGDWWIRKGRVKLEHRRKASSISNIPLLP-VPLA 308 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 ILE Y P + LP+ + Y++++ + G+ + T H RH+F Sbjct: 309 ILEKYREHPICVKKGCCLPVMCNQK--------MNSYLKEIADFCGIKKNLTTHVARHTF 360 Query: 270 ATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T + L+N L+ + +LGH TQ Y V Sbjct: 361 GTTVTLANNVPLQDVSVMLGHASTRMTQHYARV 393 >gi|330830137|ref|YP_004393089.1| phage integrase [Aeromonas veronii B565] gi|328805273|gb|AEB50472.1| Phage integrase [Aeromonas veronii B565] Length = 321 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 62/143 (43%), Gaps = 23/143 (16%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 ++ L G R SE LT + ++ T + K K R VP+ P Sbjct: 180 VVKLCLATGARWSEVEELTQSQVSPNRITF-TRTKSKKSRSVPISP-------------- 224 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNG 277 L QLP RG L ++ + + R L LP H LRH+FA+H + NG Sbjct: 225 ---ELYAQLPRKRGR----LFSDCYRAFEMVVERAGLELPAGQNTHVLRHTFASHFMMNG 277 Query: 278 GDLRSIQSILGHFRLSTTQIYTN 300 G++ +Q ILGH ++ T Y + Sbjct: 278 GNILVLQKILGHSTIAMTMRYAH 300 >gi|253573104|ref|ZP_04850494.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|256842101|ref|ZP_05547606.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|301308733|ref|ZP_07214685.1| mobilizable transposon, int protein [Bacteroides sp. 20_3] gi|251837298|gb|EES65399.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|256736417|gb|EEU49746.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|300833257|gb|EFK63875.1| mobilizable transposon, int protein [Bacteroides sp. 20_3] Length = 397 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 19/144 (13%) Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225 CGLR+S+ L ++ +RI+ K K + PL + L++ Sbjct: 254 CGLRVSDIRKLKWNDLQKSGERIRIEIKMQKTK-EPLYLPISDEALKW------------ 300 Query: 226 QLPLFRGIRGKPL-----NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280 LP +G L + G + +++ + G+ + H RH+ AT +L+ G DL Sbjct: 301 -LPQQNEAKGDDLIFPLTHEGTINKILQKWAKDAGVIKHISFHVARHTHATMMLTLGADL 359 Query: 281 RSIQSILGHFRLSTTQIYTNVNSK 304 ++ +LGH ++TTQIY + K Sbjct: 360 YTVSKLLGHKNIATTQIYAKIVDK 383 >gi|150400365|ref|YP_001324132.1| phage integrase family protein [Methanococcus vannielii SB] gi|150013068|gb|ABR55520.1| phage integrase family protein [Methanococcus vannielii SB] Length = 182 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 18/167 (10%) Query: 152 IDARNSAILY-LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKA 209 ID++ + + +LYG LR+SE L++T +NI + ++ K ++ I + + Sbjct: 22 IDSKEHKLFFKMLYGMALRVSELLTITVKNINLKEGVCKLLDTKTERFEITVIPEWLYSD 81 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 I + D NLN + PLF+ + + + ++Y + + + ST HT R S Sbjct: 82 IFGH----ILDNNLNDEDPLFK-FKNRTYAWELVKKYTKVAK--INKEFST--HTFRRSR 132 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN-------GGDW 309 A HLL++G L + L H ++TT Y + ++ GDW Sbjct: 133 ALHLLNDGVPLEKVSKYLRHKSINTTMHYLKITVEDIKKELNKIGDW 179 >gi|83814942|ref|YP_445217.1| Phage integrase family protein [Salinibacter ruber DSM 13855] gi|83756336|gb|ABC44449.1| Phage integrase family protein [Salinibacter ruber DSM 13855] Length = 415 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 78/181 (43%), Gaps = 22/181 (12%) Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 E +AL VD L E + +D L+ LYG G+R S+ +L +++ Sbjct: 229 FEEIEALEEVD--LPEEGSERRALDY----FLFALYGGGMRFSDVATLKHKHL----EGG 278 Query: 189 RIQGKGDKIRIVPLLPSVRKA--ILEYYDLCPFDLNLNIQLPLFRGI---------RGKP 237 RIQ K K +P V KA IL+ YD P + + P+ G R Sbjct: 279 RIQYKMKKTSEGAGVPIVDKAEAILDRYDNRPQEPESRV-FPILDGYDLDEMEDVQRAIE 337 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 R ++++R+ + + T H RHS A L GD+ ++ ILGH R+ T+ Sbjct: 338 SRNAYVNRQLKKVRKKAEIETNLTFHLSRHSAAWKLYREMGDIYKVKRILGHSRVEVTEE 397 Query: 298 Y 298 Y Sbjct: 398 Y 398 >gi|294782271|ref|ZP_06747597.1| integrase/recombinase [Fusobacterium sp. 1_1_41FAA] gi|294480912|gb|EFG28687.1| integrase/recombinase [Fusobacterium sp. 1_1_41FAA] Length = 280 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 66/270 (24%), Positives = 115/270 (42%), Gaps = 32/270 (11%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +N++ LE E T+ S D QFLI+L + I +L I+ + +K Sbjct: 7 KNFIYYLEFEENKKHNTVISIRKDLNQFLIYLNEHD-----IIDFNKLDELLIKEYFTKL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 +T++I + R LS IK F KYL + + + + + + + K + + LT Sbjct: 62 KTEEISASTFNRRLSSIKKFYKYLVDKGLKEKGSEILIESEKNDEK------KIEYLTPE 115 Query: 139 DNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDK 196 + L+ T+ E + + R+ + LLY G+ ++E LSL N ++ + ++ K K Sbjct: 116 EINLVRTTMEGENFNILRDRLMFELLYSSGMTVAELLSLGEVNFNLEKREIYILKNKLSK 175 Query: 197 IR---------IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 + L S ++ E D N NI +F + L +R I Sbjct: 176 TMYFSETCKKFYIKFLNSKKEKFKE-------DYNPNI---IFNNNSNERLTDRSVRRLI 225 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 + L + +TLRHSF ++L NG Sbjct: 226 NKYAEMANLNKEISPYTLRHSFCIYMLKNG 255 >gi|299147785|ref|ZP_07040848.1| integrase protein [Bacteroides sp. 3_1_23] gi|298513968|gb|EFI37854.1| integrase protein [Bacteroides sp. 3_1_23] Length = 390 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 46/163 (28%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 A L+ Y GLR S+ +LT NI++ I + SV+ Sbjct: 238 AFLFCCYA-GLRYSDFTNLTSANIVEFHQETWI-----------IYKSVKTG-------- 277 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST----------------- 260 + ++LPL+ GK + + QRY L + L ++ Sbjct: 278 -----MEVRLPLYLLFEGKGIQ--ILQRYKDDLNSFFKLKDNSNINKELNILAGLAKIDK 330 Query: 261 --TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + HT RH+ AT LL NG ++ ++Q +LGH + TTQ+Y N+ Sbjct: 331 RVSFHTARHTNATLLLYNGANITTVQKLLGHKSVKTTQVYANI 373 >gi|294505887|ref|YP_003569945.1| phage integrase [Salinibacter ruber M8] gi|294342215|emb|CBH22993.1| phage integrase [Salinibacter ruber M8] Length = 209 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 78/192 (40%), Gaps = 49/192 (25%) Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKG--DKIRIVP---------LL 203 N I +LLYG GLR+SEAL L + + S L ++ GKG D+ ++P L Sbjct: 19 NRLIAHLLYGSGLRLSEALRLRVKELDVGTSRLHVRDGKGSTDRTTVLPERLHGPLRRHL 78 Query: 204 PSVRK-----------------AILEYYDLCP--------FDLNLNIQLPLFRGIRGKPL 238 +V+ A+ E Y F + P +R Sbjct: 79 KTVKAQHEADCADGVGGVYLPDALAEKYPNAATEWRWQYVFPSTTLSEDPRSGAVRRHHR 138 Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + QR +++ + T HTLRHSFATHLL +G D+R TT Y Sbjct: 139 SDSAVQRAVKKAANAADIEKRATCHTLRHSFATHLLQDGTDVR------------TTMQY 186 Query: 299 TNVNSKNGGDWM 310 +V ++G D M Sbjct: 187 VHVLEQSGADVM 198 >gi|224368839|ref|YP_002603000.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2] gi|223691555|gb|ACN14838.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2] Length = 384 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 71/156 (45%), Gaps = 10/156 (6%) Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRK 208 KW + ++ + GLR E LT +N+ + QS + KG ++ LP K Sbjct: 207 KWHNKMSAGFILFCLHTGLRRGELFKLTWENVDLTRQSMVLKDPKG---KLDQTLPLSDK 263 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 A+ E + P D +F G GK F+ +++ GLP H LRH Sbjct: 264 AV-EVLNSLPKDYKTQW---IFYGKDGKQRTD--FKGPWDRIKVAAGLPKDFRLHGLRHH 317 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 FA+ L+S G DL ++Q +L H + TQ Y ++ K Sbjct: 318 FASALVSAGVDLYTVQKLLCHKDAAMTQRYAHLADK 353 >gi|201067901|ref|ZP_03217787.1| hypothetical protein CJBH_2432 [Campylobacter jejuni subsp. jejuni BH-01-0142] gi|200004519|gb|EDZ04997.1| hypothetical protein CJBH_2432 [Campylobacter jejuni subsp. jejuni BH-01-0142] Length = 312 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 86/189 (45%), Gaps = 21/189 (11%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTP 178 +KS LNE + + L +NVL + + ++ RNS ++ L+ GLRISEAL++ Sbjct: 122 EKSEEKLNYLNENEIIRL-NNVLEKEKAKKEVYNSFRNSLLIKLMLYGGLRISEALNVKL 180 Query: 179 ---QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235 + + D+ + I GKG K + + LEY F N+ + + G Sbjct: 181 CDFEEVDDEILKISIIGKGGKEQFAFIKKEEVDDELEY-----FKENIQDSDYIMQTSTG 235 Query: 236 KPLNPG-----VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290 K LN V Y + L GL H LRH+ A L + G +L IQ IL H Sbjct: 236 KHLNRSNAFLIVNNIYAKALISKKGL------HLLRHTLAMRLTAKGTNLVVIQKILRHA 289 Query: 291 RLSTTQIYT 299 L+TT IY Sbjct: 290 NLNTTTIYA 298 >gi|253577885|ref|ZP_04855157.1| integrase [Ruminococcus sp. 5_1_39B_FAA] gi|251850203|gb|EES78161.1| integrase [Ruminococcus sp. 5_1_39BFAA] Length = 323 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/206 (25%), Positives = 90/206 (43%), Gaps = 33/206 (16%) Query: 38 SYECDTRQFLIFL-----AF--YTEEKITIQTIRQLSYTEI-------RAFISKRRTQKI 83 SY D R F FL AF Y+ + T+ + QL +I + + + +T+ Sbjct: 57 SYAYDIRIFFQFLLDENPAFKDYSMKDFTVDVLDQLKAIDIEEYQEYLKVYKNGDKTETN 116 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKI-------------TTESNILNMRNLKKSNSLPRALN 130 G+R LKR +S ++SF Y K + T E NI+ + + + L + Sbjct: 117 GERGLKRKISALRSFYAYYYKHEFIQTNPTVLVDVPKTHEKNIIRLDADEVAMLLEHIEH 176 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 LT V + E R+ AI+ LL G G+R+SE + L +++ + +++ Sbjct: 177 CGDELTGQKRVYYEKTKE------RDLAIVTLLLGTGIRVSECVGLDVEDVDFKNNGIKV 230 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDL 216 KG +V V KA+ +Y ++ Sbjct: 231 TRKGGNEMVVYFGHEVEKALKKYLEV 256 >gi|218129163|ref|ZP_03457967.1| hypothetical protein BACEGG_00738 [Bacteroides eggerthii DSM 20697] gi|217988663|gb|EEC54982.1| hypothetical protein BACEGG_00738 [Bacteroides eggerthii DSM 20697] Length = 385 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 50/150 (33%), Positives = 77/150 (51%), Gaps = 20/150 (13%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGK---GDKIRI-VPLLPSVRK-AIL 211 A L+ Y G+R S+ ++L+ +N +D +Q T I G ++R+ + LL S + AIL Sbjct: 237 AFLFCCYA-GMRYSDFINLSSENFVDINQETWLIYKSVKTGTEVRLPLYLLFSGKGIAIL 295 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 Y L F +R N V + I + R GL + HT RH+ AT Sbjct: 296 NKY---------RDNLEDFFHLRD---NSNVNKDLI-IITRLAGLSKRISFHTARHTNAT 342 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 L+ NG ++ ++Q +LGH + TTQ+YTNV Sbjct: 343 LLIYNGINITTVQKLLGHKSVKTTQVYTNV 372 >gi|260592906|ref|ZP_05858364.1| integrase [Prevotella veroralis F0319] gi|260535106|gb|EEX17723.1| integrase [Prevotella veroralis F0319] Length = 406 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/209 (24%), Positives = 95/209 (45%), Gaps = 35/209 (16%) Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMD 183 PR++ + + ++D E +W + R L++ + C GL IS+ +L +NI+ Sbjct: 222 PRSITQDELQKIID-------LEIEWENYRIVRDLFV-FSCFTGLAISDVRNLREENIVF 273 Query: 184 DQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-- 238 ++ L I+G+ K + V +LP + + Y RGIR + Sbjct: 274 EEGELCIKGRRMKTKTPYRVQVLPPALEIMNRY-----------------RGIRAGFVFD 316 Query: 239 --NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTT 295 + + ++R +G+ T H RH+FA+ + LS G + ++ +LGH L TT Sbjct: 317 VPTTDIILNGMHYIQRNIGMKTPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTT 376 Query: 296 QIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 QIY V+S+ M ++ + + T K Sbjct: 377 QIYAAVSSERIHRDMQKVQQRIQDTFTLK 405 >gi|229106681|ref|ZP_04236913.1| Tyrosine recombinase [Bacillus cereus Rock3-28] gi|228676734|gb|EEL31348.1| Tyrosine recombinase [Bacillus cereus Rock3-28] Length = 358 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 69/304 (22%), Positives = 126/304 (41%), Gaps = 42/304 (13%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK---------RRTQKIGD 85 TL +Y D R F +L +E+ I ++ I+ + ++++ K + Q + + Sbjct: 43 TLLNYVYDFRVFFNWLL--SEQIIELKPIKDIPFSDLENLKKKDVENFMRFLKLQQSMQN 100 Query: 86 RSLKRSLSGIKSFLKYL------------------KKRKITTESNILNMRNLKKSNSLPR 127 S+ R +S +KS KYL K +I + LN R + + + Sbjct: 101 SSVNRKISALKSLFKYLTALSENEDGECYFYRNVMAKIEIHKDKETLNARAKRMRSKIFH 160 Query: 128 ALNEKQALTLV--DNVLLHTSHETKWI---DARNSAILYLLYGCGLRISEALSLTPQNIM 182 ++++ L V ++ T H+ + R+ AIL L G G+R+SE L ++I Sbjct: 161 NDDDQEFLNYVKYEHEKSLTKHQLFYFLRDKDRDVAILSLFLGSGIRVSELADLRMEDIN 220 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKP 237 + + + KG+K V + P I +Y ++ P N+ L ++ +P Sbjct: 221 LKERLIDVIRKGNKEDSVWITPIALNDIEKYMEIRDNKYAPGKELKNVFLSKYKHT-AQP 279 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L+ Q + + + G +S H LRH+ A L D + LGH T + Sbjct: 280 LSVRAIQDIVEKYTKAYGKRMS--PHKLRHTLANKLYMEEKDSLQVMQQLGHTSQDTALL 337 Query: 298 YTNV 301 YT + Sbjct: 338 YTQL 341 >gi|154493767|ref|ZP_02033087.1| hypothetical protein PARMER_03109 [Parabacteroides merdae ATCC 43184] gi|160890046|ref|ZP_02071049.1| hypothetical protein BACUNI_02486 [Bacteroides uniformis ATCC 8492] gi|154086517|gb|EDN85562.1| hypothetical protein PARMER_03109 [Parabacteroides merdae ATCC 43184] gi|156860434|gb|EDO53865.1| hypothetical protein BACUNI_02486 [Bacteroides uniformis ATCC 8492] Length = 454 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 22/153 (14%) Query: 162 LLYGC--GLRISEALSLTPQNIMDD----------QSTLRIQGKGDKIRIVPLLPSVRKA 209 ++ C GL S+ +L+ +N++ D + L + K I +PLLP V A Sbjct: 293 FVFACFTGLAFSDVATLSGENLVQDNLGDWWIRKGRVKLEHRRKASSISNIPLLP-VPLA 351 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 ILE Y P + LP+ + Y++++ + G+ + T H RH+F Sbjct: 352 ILEKYREHPICVKKGCCLPVMCNQK--------MNSYLKEIADFCGIKKNLTTHVARHTF 403 Query: 270 ATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T + L+N L+ + +LGH TQ Y V Sbjct: 404 GTTVTLANNVPLQDVSVMLGHASTRMTQHYARV 436 >gi|298377186|ref|ZP_06987140.1| transposase [Bacteroides sp. 3_1_19] gi|298266170|gb|EFI07829.1| transposase [Bacteroides sp. 3_1_19] Length = 412 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 22/153 (14%) Query: 162 LLYGC--GLRISEALSLTPQNIMDD----------QSTLRIQGKGDKIRIVPLLPSVRKA 209 ++ C GL S+ +L+ +N++ D + L + K I +PLLP V A Sbjct: 251 FVFACFTGLAFSDVATLSGENLVQDNLGDWWIRKGRVKLEHRRKASSISNIPLLP-VPLA 309 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 ILE Y P + LP+ + Y++++ + G+ + T H RH+F Sbjct: 310 ILEKYREHPICVKKGCCLPVMCNQK--------MNSYLKEIADFCGIKKNLTTHVARHTF 361 Query: 270 ATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T + L+N L+ + +LGH TQ Y V Sbjct: 362 GTTVTLANNVPLQDVSVMLGHASTRMTQHYARV 394 >gi|170738181|ref|YP_001779441.1| integrase family protein [Burkholderia cenocepacia MC0-3] gi|169820369|gb|ACA94951.1| integrase family protein [Burkholderia cenocepacia MC0-3] Length = 398 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 77/192 (40%), Gaps = 34/192 (17%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM-------DDQSTLRIQGKGDKIRIVPLLPSVR 207 R + LLY GLRI+EA T ++ L + GKG + R+VP + Sbjct: 208 RARWLFTLLYLGGLRITEAADTTMGQFFCRRDANGHERWWLDVTGKGGRQRLVPATDEMM 267 Query: 208 KAILEY---YDLCPFDLN---LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL--- 258 + Y + L L+ + LP G KPL R ++Q+ R+ L Sbjct: 268 AELTRYRRTHGLPALPLDGEPTPLVLPF--GQARKPLTRAALHRIVKQVFRHAAGRLRAN 325 Query: 259 ------------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 +AH LRHS +H+ DLR ++ LGH L+TT Y + + Sbjct: 326 GETGEQAARVLEQASAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHADD--- 382 Query: 307 GDWMMEIYDQTH 318 DW ++ H Sbjct: 383 -DWRHRETEEKH 393 >gi|154494486|ref|ZP_02033806.1| hypothetical protein PARMER_03843 [Parabacteroides merdae ATCC 43184] gi|154085930|gb|EDN84975.1| hypothetical protein PARMER_03843 [Parabacteroides merdae ATCC 43184] Length = 411 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 22/153 (14%) Query: 162 LLYGC--GLRISEALSLTPQNIMDD----------QSTLRIQGKGDKIRIVPLLPSVRKA 209 ++ C GL S+ +L+ +N++ D + L + K I +PLLP V A Sbjct: 250 FVFACFTGLAFSDVATLSGENLVQDNLGDWWIRKGRVKLEHRRKASSISNIPLLP-VPLA 308 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 ILE Y P + LP+ + Y++++ + G+ + T H RH+F Sbjct: 309 ILEKYREHPVCIKKGCCLPVMCNQK--------MNSYLKEIADFCGIKKNLTTHVARHTF 360 Query: 270 ATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T + L+N L+ + +LGH TQ Y V Sbjct: 361 GTTVTLANNVPLQDVSVMLGHASTRMTQHYARV 393 >gi|157377375|ref|YP_001475975.1| phage integrase [Shewanella sediminis HAW-EB3] gi|157319749|gb|ABV38847.1| phage integrase [Shewanella sediminis HAW-EB3] Length = 309 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 55/177 (31%), Positives = 81/177 (45%), Gaps = 19/177 (10%) Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSV 206 + ++I R+ IL L GLR E +LT +I D+ TL ++ GKG K R P+ P+ Sbjct: 129 DKRYIGKRDCCILALFLSTGLRRFELANLTVSDIHLDKRTLTVKSGKGKKPRKQPI-PT- 186 Query: 207 RKAILEYYDLC-------PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 L Y D P DL I + + RG + ++Q I + R ++ Sbjct: 187 --WALTYIDNWLRVRTHQPGDLFNPIWNNVIKHDRGLS-SAALYQ--IVKARTLAATGIT 241 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + H LR +F T LL+ DL + + GH ++TTQIY K M E DQ Sbjct: 242 ISPHDLRRTFITELLNQKVDLSTASKLAGHANVTTTQIY----DKRDESVMREAIDQ 294 >gi|301309611|ref|ZP_07215553.1| transposase [Bacteroides sp. 20_3] gi|300832700|gb|EFK63328.1| transposase [Bacteroides sp. 20_3] Length = 412 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 22/153 (14%) Query: 162 LLYGC--GLRISEALSLTPQNIMDD----------QSTLRIQGKGDKIRIVPLLPSVRKA 209 ++ C GL S+ +L+ +N++ D + L + K I +PLLP V A Sbjct: 250 FVFACFTGLAFSDVATLSGENLVQDNLGDWWIRKGRVKLEHRRKASSISNIPLLP-VPLA 308 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 ILE Y P + LP+ + Y++++ + G+ + T H RH+F Sbjct: 309 ILEKYREHPICVKKGCCLPVMCNQK--------MNSYLKEIADFCGIKKNLTTHVARHTF 360 Query: 270 ATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T + L+N L+ + +LGH TQ Y V Sbjct: 361 GTTVTLANNVPLQDVSVMLGHASTRMTQHYARV 393 >gi|222430247|gb|ACM50312.1| integrase [Escherichia coli] Length = 298 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 67/287 (23%), Positives = 113/287 (39%), Gaps = 58/287 (20%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T Q+Y R F+ F ++ L +E+ AF+S ++ S R Sbjct: 33 TEQAYVHWVRAFIRFHG--------VRHPATLGSSEVEAFLSWLANERKVSVSTHRQ--A 82 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + + L + K T + + + S LP L + + ++ +++ Sbjct: 83 LAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILG-----------FLEG 131 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR-- 207 + LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 132 EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQ 191 Query: 208 ------------------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 +A + F + + P +R Sbjct: 192 LSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHH 251 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284 + FQR ++ G+ T HTLRHSFAT LL +G D+R++Q Sbjct: 252 MYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQ 298 >gi|77406673|ref|ZP_00783715.1| prophage LambdaSa2, site-specific recombinase, phage integrase family [Streptococcus agalactiae H36B] gi|77174714|gb|EAO77541.1| prophage LambdaSa2, site-specific recombinase, phage integrase family [Streptococcus agalactiae H36B] Length = 263 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 34/166 (20%) Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK-----GDK--- 196 TS E K+ ++ +YL+ GL+ SEA+ LT +I D+ L + DK Sbjct: 92 TSKEVKY---KSHFFIYLIAKTGLKFSEAMGLTWSDIDRDELLLHVNKAYKVFGSDKGFQ 148 Query: 197 -------IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 IR VP+ + K +L+ Y L + +F GI +N + Sbjct: 149 PTKNKYLIRYVPINNTTIK-LLDQYRLL-----FKTETRIFEGISNTAVN--------KT 194 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 L++ +G + H+LRH++ ++L+S G DL +I I+GH L+ T Sbjct: 195 LKKIVGRNIHI--HSLRHTYVSYLISEGIDLFAISKIVGHKDLNIT 238 >gi|323159070|gb|EFZ45070.1| resolvase [Escherichia coli E128010] Length = 212 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 40/182 (21%) Query: 153 DARNSAILYLLYGCGLRISEALSLT-------PQNIMDDQSTL--------RIQGK---G 194 D R +L L+ G RI+EAL+LT P +TL R G+ G Sbjct: 10 DLRRKMLLATLWNTGARINEALALTRGDFSLAPPYPFVQPATLKQRTEKAARTAGRTPAG 69 Query: 195 DKIR-IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF-RGIR-GKPLNPGVFQRYIRQLR 251 + R +VPL S + L+ + +++P+ R R G+ +++ R +R Sbjct: 70 QQTRRLVPLSDSWYVSQLQ-------TMVATLKIPMEQRNKRTGRTEKARIWEVTDRTVR 122 Query: 252 RYLG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 ++G + T HT RHS+A H+L G L+ +QS++GH +S+T++YT Sbjct: 123 TWIGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYT 182 Query: 300 NV 301 V Sbjct: 183 KV 184 >gi|260590882|ref|ZP_05856340.1| putative integrase [Prevotella veroralis F0319] gi|260537173|gb|EEX19790.1| putative integrase [Prevotella veroralis F0319] Length = 421 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 62/185 (33%), Positives = 82/185 (44%), Gaps = 30/185 (16%) Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTL 188 E+ ALT D L + + +D N L L GC GL S+ L MDD TL Sbjct: 219 ERNALTSDDLHKLLSYRPHRSVD--NHCRLIFLLGCFTGLAFSDLKKLR----MDDVYTL 272 Query: 189 R--------IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240 + K IVPLLP + + D L LFR P N Sbjct: 273 DDGRRYISLCRTKTQNRSIVPLLPIAEEILTIVSDGQKEGL-------LFREF---PTNS 322 Query: 241 GVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQI 297 F R IR + GLP T T+HT RH+FAT + L NG + ++ +LGH +STT++ Sbjct: 323 H-FNRKIRDIIIKAGLPSHTEATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEL 381 Query: 298 YTNVN 302 Y V+ Sbjct: 382 YAKVS 386 >gi|189010585|ref|ZP_02808040.2| resolvase [Escherichia coli O157:H7 str. EC4076] gi|189402414|ref|ZP_02782304.2| resolvase [Escherichia coli O157:H7 str. EC4401] gi|189403253|ref|ZP_02794354.2| resolvase [Escherichia coli O157:H7 str. EC4486] gi|189403269|ref|ZP_02794244.2| resolvase [Escherichia coli O157:H7 str. EC4486] gi|189404239|ref|ZP_02787990.2| resolvase [Escherichia coli O157:H7 str. EC4501] gi|189405344|ref|ZP_02814942.2| resolvase [Escherichia coli O157:H7 str. EC869] gi|188999522|gb|EDU68508.1| resolvase [Escherichia coli O157:H7 str. EC4076] gi|189355637|gb|EDU74056.1| resolvase [Escherichia coli O157:H7 str. EC4401] gi|189361655|gb|EDU80074.1| resolvase [Escherichia coli O157:H7 str. EC4486] gi|189361705|gb|EDU80124.1| resolvase [Escherichia coli O157:H7 str. EC4486] gi|189366764|gb|EDU85180.1| resolvase [Escherichia coli O157:H7 str. EC4501] gi|189370537|gb|EDU88953.1| resolvase [Escherichia coli O157:H7 str. EC869] Length = 256 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 56/226 (24%), Positives = 95/226 (42%), Gaps = 52/226 (23%) Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL------------LYGCGL 168 + SLP A++ AL L ++H + SA+L+ L+ G Sbjct: 10 QPASLPVAIDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVPNLHRKMLLATLWNTGA 69 Query: 169 RISEALSLT-------PQNIMDDQSTL------------RIQGKGDKIRIVPLLPSVRKA 209 RI+EAL+LT P +TL R+ R+VPL S + Sbjct: 70 RINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAGRMPAGQQTHRLVPLSDSWYVS 129 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG------------ 255 L+ + +++P+ R R G+ +++ R +R ++G Sbjct: 130 QLQ-------TMVATLKIPMERRNRRTGRTEKARIWEVTDRTVRTWIGEAVAAAAADGVT 182 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+ +QS++GH +S+ ++YT V Sbjct: 183 FSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSKEVYTKV 228 >gi|330814764|ref|YP_004362939.1| integrase family protein [Burkholderia gladioli BSR3] gi|327374756|gb|AEA66107.1| integrase family protein [Burkholderia gladioli BSR3] Length = 390 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 75/180 (41%), Gaps = 30/180 (16%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIM-------DDQSTLRIQGKGDKIRIVPLLPSV 206 R + LLY GLRISE T + ++ L I GKGDK+R+VP + Sbjct: 200 GRARWLFTLLYLGGLRISEVSGNTMGDFFCRRDADGHERWWLEITGKGDKVRLVPASAEM 259 Query: 207 RKAILEY------------YDLCPFDLNLNIQL-PLFRGIRGKPLNPGVFQRYIRQLR-- 251 + Y ++ P L L + PL R + G+F +LR Sbjct: 260 MVELGRYRRERGLAILPTGHEDTPLVLPLGQSMKPLTRAAL-HTIVKGIFAGAAEKLRMR 318 Query: 252 ------RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 R L +AH LRHS +H+ DLR I+ LGH ++TT +Y + + + Sbjct: 319 GEECAARAAQLE-RASAHWLRHSAGSHMADGDVDLRMIRDNLGHASITTTSLYLHADDDD 377 >gi|304382636|ref|ZP_07365130.1| integrase [Prevotella marshii DSM 16973] gi|304336261|gb|EFM02503.1| integrase [Prevotella marshii DSM 16973] Length = 429 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 14/159 (8%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP--LLPSVRKAILEYYDLC 217 ++ C GL + +L P+NI+ I K K + LL + K+I+ Y Sbjct: 268 FVFSCFTGLAYIDVYNLAPENIVTLNGKQWIMTKRQKTSVETNVLLLDIPKSIIAKYSGK 327 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 + LF + + LN Y++++ G+ + T H RH+FAT LS G Sbjct: 328 TYR-----DGKLFPMLTNQKLNS-----YLKEIADICGIKKNLTFHLARHTFATMSLSKG 377 Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + S+ +LGH + TTQ+Y + +K M E+ D+ Sbjct: 378 VPIESVSKMLGHTNIKTTQLYARITNKKIEHDMDELADK 416 >gi|300825315|ref|ZP_07105396.1| site-specific recombinase, phage integrase family [Escherichia coli MS 119-7] gi|300522214|gb|EFK43283.1| site-specific recombinase, phage integrase family [Escherichia coli MS 119-7] Length = 199 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 36/174 (20%) Query: 159 ILYLLYGCGLRISEALSLT-------PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211 +L +L+ G RI+EAL+LT P +TL+ Q R +P+ ++ Sbjct: 2 LLAILWNTGARINEALALTRGDFSLAPPYPFVQLATLK-QRTEKAARTAGRMPAGQQT-- 58 Query: 212 EYYDLCPFD----------LNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG---- 255 + L P + +++P+ R + G+ +++ R +R ++G Sbjct: 59 --HRLVPLSDAWYVSQVQTMVATLKIPMERRNKRTGRTEKARIWEVTDRTVRTWIGEAVA 116 Query: 256 --------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 117 AAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 170 >gi|207724624|ref|YP_002255021.1| integrase / recombinase protein [Ralstonia solanacearum MolK2] gi|206589846|emb|CAQ36807.1| integrase / recombinase protein [Ralstonia solanacearum MolK2] Length = 397 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 74/176 (42%), Gaps = 28/176 (15%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIM--------DDQSTLRIQGKGDKIRIVPLLPS 205 AR + +LY GLR +E S TP + D+ + +QGKG K R+VP Sbjct: 206 ARCRWLFTVLYLAGLRAAEIAS-TPMGAVFRRRDAAGADRWWIEVQGKGSKTRLVPATDE 264 Query: 206 VRKAILEYYDL--CPFDLNLNIQLPLFRGIRGK--PLNPGVFQRYIRQL----------- 250 + + Y P L PL + G+ PL+ G ++++ Sbjct: 265 LIAELARYRRAHGLPPSPQLGEARPLLLPLIGQEQPLSRGAVHLIVKEVFTLAAERLRAR 324 Query: 251 ----RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + L S +AH +RH+ +H+ DLR ++ LGH L+TT +Y + Sbjct: 325 GPEWQAQADLLASASAHWIRHTAGSHMTDQQVDLRFVRDNLGHASLATTSVYLHAE 380 >gi|307566493|ref|ZP_07628924.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307344804|gb|EFN90210.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 439 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 62/185 (33%), Positives = 81/185 (43%), Gaps = 30/185 (16%) Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTL 188 E+ ALT D L + + +D N L L GC GL S+ L MDD T Sbjct: 219 ERNALTSDDLHKLLSYRPHRSVD--NHCRLIFLLGCFTGLAFSDLKKLR----MDDVYTF 272 Query: 189 R--------IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240 + K IVPLLP + + D L LFR P N Sbjct: 273 GDGRRYISLCRTKTQNRSIVPLLPIAEEILTIVSDGRKEGL-------LFREF---PTN- 321 Query: 241 GVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQI 297 F R IR + GLP T T+HT RH+FAT + L NG + ++ ILGH +STT++ Sbjct: 322 SHFNRKIRDIIIKAGLPPHTEATSHTARHTFATTICLENGLPIETVSKILGHRFISTTEL 381 Query: 298 YTNVN 302 Y V+ Sbjct: 382 YAKVS 386 >gi|300820004|ref|ZP_07100184.1| site-specific recombinase, phage integrase family [Escherichia coli MS 107-1] gi|300527453|gb|EFK48515.1| site-specific recombinase, phage integrase family [Escherichia coli MS 107-1] gi|321271395|gb|ADW79485.1| putative site-specific recombinase [Escherichia coli] gi|323133074|gb|ADX20502.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323959152|gb|EGB54818.1| phage integrase [Escherichia coli H489] Length = 261 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 36/180 (20%) Query: 153 DARNSAILYLLYGCGLRISEALSLT-------PQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 D R +L L+ G RI+EAL+LT P +TL+ Q R +P+ Sbjct: 57 DLRRKMLLATLWNTGARINEALALTRGDFSLAPPYPFVQLATLK-QRTEKAARTAGRMPA 115 Query: 206 VRKAILEYYDLCPFD----------LNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRY 253 ++ + L P + +++P+ R + G+ +++ R +R + Sbjct: 116 GQQT----HRLVPLSDAWYVSQLQTMVATLKIPMERRNKRTGRTEKARIWEVTDRTVRTW 171 Query: 254 LG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +G + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 172 IGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|255693724|ref|ZP_05417399.1| integrase protein [Bacteroides finegoldii DSM 17565] gi|260620475|gb|EEX43346.1| integrase protein [Bacteroides finegoldii DSM 17565] Length = 391 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 16/148 (10%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----GDKIRIVPLLPSVRKAILEY 213 A L+ Y GLR S+ LT +NI++ + K G ++R+ L K I Sbjct: 238 AFLFCCYA-GLRYSDFTHLTSENIIEFHKEFWLIYKSVKTGTEVRLPLYLLFEGKGI--- 293 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 + L + +LN F+ LN + + L + G+ + HT RH+ AT L Sbjct: 294 HILHRYKNDLN---SFFKLKDNSNLN-----KELNVLAKLAGISKHISFHTARHTNATLL 345 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + NG ++ ++Q +LGH + TTQ+Y N+ Sbjct: 346 IYNGANITTVQKLLGHKSVKTTQVYANI 373 >gi|167621565|ref|YP_001672073.1| integrase family protein [Caulobacter sp. K31] gi|167351688|gb|ABZ74414.1| integrase family protein [Caulobacter sp. K31] Length = 268 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 20/176 (11%) Query: 143 LHTSHETKWID------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGD 195 L E +++D R +L L G R SE + L +++ + + I +GKG Sbjct: 51 LTVEEELRFLDRAYAQGGRTGLMLQTLLETGARASELVQLRIEDVSLAERVVTIREGKGG 110 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQR-----YIRQ 249 K R +P +R+ + L + PLF +G P V R +R+ Sbjct: 111 KRREIP----IRR---DLAQLLQLHIGARRAGPLFASRQQGSGPTPHVLTRQRIGQVVRE 163 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + R G+ H LRH+ AT LL+ G D+ +Q LGH ++TT++Y + Sbjct: 164 VARDAGITKRVYPHLLRHTVATRLLALGMDITDLQRFLGHESITTTRLYAETTAAT 219 >gi|296164063|ref|ZP_06846686.1| XerC/XerD family integrase/recombinase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900611|gb|EFG79994.1| XerC/XerD family integrase/recombinase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 310 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/75 (29%), Positives = 40/75 (53%) Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288 LFRG G P+ P + + R GL H LRH++ ++++ G + + +LG Sbjct: 215 LFRGRVGAPMRPDAIGELMAAVSRRAGLDTPVRPHQLRHAYGSNVVDAGAGIDVVADLLG 274 Query: 289 HFRLSTTQIYTNVNS 303 H +S++QIY + ++ Sbjct: 275 HAAVSSSQIYLHPDA 289 >gi|297566460|ref|YP_003685432.1| integrase family protein [Meiothermus silvanus DSM 9946] gi|296850909|gb|ADH63924.1| integrase family protein [Meiothermus silvanus DSM 9946] Length = 353 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 85/323 (26%), Positives = 134/323 (41%), Gaps = 57/323 (17%) Query: 31 LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS----------YTEIRAFISK--- 77 LS TL++Y R FL + +Q ++ + TE + + Sbjct: 48 LSPKTLETYRLGVRDFLAWAWPPDAPAPQVQILKATADDLDRYIADLQTEGSHLVGRVLE 107 Query: 78 -RRTQKIGDRSLKRS-----LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131 RR SLK S L+G+++ K L+ ++ L M + P A Sbjct: 108 YRRQPGANGPSLKPSSIATYLAGVRALYKALE----WADAATLPMGVRAPRDPTP-AYER 162 Query: 132 KQAL--TLVDNVLLHTSHETKWIDARNSAI-LYLLYGCGLRISEALSLTPQNIMDDQSTL 188 + AL +L ++L H ET R I + L+ GLRISE + L Q+I + L Sbjct: 163 RPALPVSLYRHLLAHL--ETGEPHHRRDRIAVRLMAEAGLRISEVVHLQVQDIHLAERLL 220 Query: 189 RIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL--------- 238 ++ GKG K R VPL S+ + E D L I+L G+ L Sbjct: 221 EVKRGKGSKSRSVPLSKSL---VAELQDW------LRIRLAHAAAGEGRVLVNLGGRKAD 271 Query: 239 NPGVFQRYIRQL--RRY--LGLPLS-TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 G+ R +R++ R Y LG P + AH LRH+ T DL + +LGH ++ Sbjct: 272 GRGMTVRGLREILNRHYRTLGFPARYSGAHLLRHTAGTRFYQVSRDLHATARLLGHSNIN 331 Query: 294 TTQIYTNVNSKNGGDWMMEIYDQ 316 T+ IY ++ + + E+ D+ Sbjct: 332 TSAIYAKMDLQG----LFEVVDK 350 >gi|157149457|ref|YP_001451484.1| resolvase [Escherichia coli E24377A] gi|188574267|ref|YP_001919382.1| resolvase [Escherichia coli 53638] gi|157076624|gb|ABV16335.1| resolvase [Escherichia coli E24377A] gi|188501442|gb|ACD54576.1| resolvase [Escherichia coli 53638] Length = 277 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 40/182 (21%) Query: 153 DARNSAILYLLYGCGLRISEALSLT-------PQNIMDDQSTL------------RIQGK 193 D R +L L+ G RI+EAL+LT P +TL R+ Sbjct: 73 DLRRKMLLATLWNTGARINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAGRMPAG 132 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLR 251 R+VPL + + L+ + +++P+ R + G+ +++ R +R Sbjct: 133 QQTHRLVPLSDTWYVSQLQ-------TMVATLKIPMERRNKRTGRTEKARIWEVTDRTVR 185 Query: 252 RYLG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 ++G + T HT RHS+A H+L G L+ +QS++GH +S+T++YT Sbjct: 186 TWIGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYT 245 Query: 300 NV 301 V Sbjct: 246 KV 247 >gi|295840995|dbj|BAJ06873.1| integron integrase intI [uncultured bacterium] Length = 423 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 68/243 (27%), Positives = 97/243 (39%), Gaps = 69/243 (28%) Query: 91 SLSGIKSFLKYLK-KRKIT--TESNILNM-----RNL--------------KKSNSLPRA 128 S S I FL+YL KRK++ T++ LN RN+ KK LP Sbjct: 191 SESHISYFLEYLVIKRKVSSSTQAQALNALVYFYRNILEIKLSENIQFARSKKPKRLPVV 250 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 L++ + + L H ++ N LLYGCG+R+ E + L +I D L Sbjct: 251 LSQAEI-----SKLFSAMHNPTFLLMAN-----LLYGCGMRLMECVRLRVLDIDFDYQQL 300 Query: 189 RIQG-KGDKIRIVPL-----------LPSVRK-----------------AILEYYDLCPF 219 I+G KG K R+ P+ L VR+ A+ Y Sbjct: 301 LIRGAKGKKDRVAPIPAKLVTPLKSHLIWVRERHDEDLAHGFGCVYLPDALARKYPNAER 360 Query: 220 DLNLNIQLPLFR--------GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 + P R IR ++ QR+I++ + GL + HTLRHSFAT Sbjct: 361 EFRWQFIFPSVRVSADPRTGEIRRHHIHQSGLQRHIKRSADHCGLYKKVSCHTLRHSFAT 420 Query: 272 HLL 274 HLL Sbjct: 421 HLL 423 >gi|288800951|ref|ZP_06406408.1| integrase [Prevotella sp. oral taxon 299 str. F0039] gi|288332412|gb|EFC70893.1| integrase [Prevotella sp. oral taxon 299 str. F0039] Length = 383 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 62/185 (33%), Positives = 82/185 (44%), Gaps = 30/185 (16%) Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTL 188 E+ ALT D L + + +D N L L GC GL S+ L MDD TL Sbjct: 163 ERNALTSDDLHKLLSYRPHRSVD--NHCRLIFLLGCFTGLAFSDLKKLR----MDDVYTL 216 Query: 189 R--------IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240 + K IVPLLP + + D L LFR P N Sbjct: 217 DDGRRYISLCRTKTQNRSIVPLLPIAEEILTIVNDGRKEGL-------LFREF---PTN- 265 Query: 241 GVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQI 297 F R IR + GLP T T+HT RH+FAT + L NG + ++ +LGH +STT++ Sbjct: 266 SHFNRKIRDIIIKAGLPSHTEATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEL 325 Query: 298 YTNVN 302 Y V+ Sbjct: 326 YAKVS 330 >gi|170761597|ref|YP_001788677.1| phage integrase family site specific recombinase [Clostridium botulinum A3 str. Loch Maree] gi|169408586|gb|ACA56997.1| site-specific recombinase, phage integrase family [Clostridium botulinum A3 str. Loch Maree] Length = 199 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/196 (23%), Positives = 91/196 (46%), Gaps = 12/196 (6%) Query: 122 SNSLPRALNEKQALTLVDNVLL-HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 SN+ + L +++A+ L + ++ SH R+ A+ + Y CGLR SE + + Sbjct: 5 SNNKMKYLTQQEAIRLFNAIIFSDNSHA-----VRDLALFRVAYRCGLRASEISLIKLDD 59 Query: 181 IMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239 D+ L + KG + L + +KA+ Y + + ++ N LF+ + P++ Sbjct: 60 YNVDKGDLYCKRLKGSNNNTIRLDVTTKKALDTY--IRDYKISCN-SGTLFKSQKNNPIS 116 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAH--TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 +++ + + + H TL+H+ A HL + D++ +Q LGH +S T+I Sbjct: 117 RQTLDYLMKKYCKIANISDKSKHHFHTLKHTTAVHLAESEMDIKELQWWLGHKSVSNTEI 176 Query: 298 YTNVNSKNGGDWMMEI 313 Y +K M++ Sbjct: 177 YFQFTTKQQEKMYMKL 192 >gi|57505077|ref|ZP_00371025.1| site-specific recombinase XerC, putative [Campylobacter coli RM2228] gi|57019162|gb|EAL55874.1| site-specific recombinase XerC, putative [Campylobacter coli RM2228] Length = 312 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 86/189 (45%), Gaps = 21/189 (11%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTP 178 +KS LNE + + L +NVL + + ++ RNS ++ L+ GLRISEAL++ Sbjct: 122 EKSEEKLNYLNENEIIRL-NNVLEKEKAKKEVYNSFRNSLLIKLMLYGGLRISEALNVKL 180 Query: 179 ---QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235 + + D+ + I GKG K + + LEY F N+ + + G Sbjct: 181 CDFEEVDDEILKISIIGKGGKEQFAFIKKEEVDDELEY-----FKENIQDSDYIMQTSTG 235 Query: 236 KPLNPG-----VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290 K LN V Y + L GL H LRH+ A L + G +L IQ IL H Sbjct: 236 KHLNRSNAFLIVNNIYAKALISKKGL------HLLRHTLAMRLTAKGTNLVVIQKILRHA 289 Query: 291 RLSTTQIYT 299 L+TT IY Sbjct: 290 NLNTTTIYA 298 >gi|169344273|ref|ZP_02865254.1| tyrosine recombinase [Clostridium perfringens C str. JGS1495] gi|169297604|gb|EDS79705.1| tyrosine recombinase [Clostridium perfringens C str. JGS1495] Length = 236 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/196 (26%), Positives = 94/196 (47%), Gaps = 31/196 (15%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYT--EEKITIQTIRQLSYTEIR----- 72 N+L+N+ +G S T++ Y D F FL Y E I ++ I ++ +++ Sbjct: 48 NYLENV---KGKSLNTVKGYSVDLGLFFKFLKVYKGLENNIELEKIEEVEISDLGDNFIK 104 Query: 73 -----------AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR-KITTESNILNMRNLK 120 AF+ K R R+ R ++ +KSF K+L + K+ E+ + + + K Sbjct: 105 DITLSDIYAFLAFLEKVRNNSAYARA--RKVATLKSFFKFLNSKIKLIDENPTVELESPK 162 Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 + P L Q++T++++ + ++ + R+ IL L CG+R+SE ++ + Sbjct: 163 INKRHPVYLTLDQSITVLNS--MDKGNKNYY---RDYCILTLFLNCGMRLSELCNIEIEK 217 Query: 181 IMDDQSTLRIQGKGDK 196 I D TL I GKG+K Sbjct: 218 IKGD--TLTIIGKGNK 231 >gi|94968162|ref|YP_590210.1| phage integrase [Candidatus Koribacter versatilis Ellin345] gi|94550212|gb|ABF40136.1| phage integrase [Candidatus Koribacter versatilis Ellin345] Length = 454 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 10/170 (5%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDD---QSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215 ++ LL GLRI EA+ + + D S GK D + S RK + Sbjct: 281 LVLLLAVTGLRIGEAIGIKWSDFDGDILHVSRTIYDGKADSTKTAS---SNRKLPIPAAL 337 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPG-VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 + + + + +F G P+NPG +RY+R + LG+ L T H RH+ AT LL Sbjct: 338 ISRMRMLGDGEF-IFHSRAGSPVNPGNALKRYLRPAAKALGIRL-TGWHDFRHTQATQLL 395 Query: 275 SNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQTHPSITQ 323 +G + + ILGH + T +Y + ++ + I DQ P++T+ Sbjct: 396 RSGSSPKVVSGILGHSDVGITLNVYEHTETEIFRAPLERIADQLLPTVTK 445 >gi|319788864|ref|YP_004090179.1| integrase family protein [Ruminococcus albus 7] gi|315450731|gb|ADU24293.1| integrase family protein [Ruminococcus albus 7] Length = 359 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 56/214 (26%), Positives = 92/214 (42%), Gaps = 42/214 (19%) Query: 128 ALNEKQALTLVDNVLL--HTSHETKWIDAR-------------NSAIL--YLLYGCGLRI 170 A E L DNV++ T ET+ + + N+A L L GLRI Sbjct: 140 AQKEYHILNPFDNVIMPKSTKSETRLLTKKEQKKLKEYLKSNVNTATLGISLAISMGLRI 199 Query: 171 SEALSLTPQNIMDDQSTL---------RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221 E LT Q+I TL R++G+ K +IV L P + + E P Sbjct: 200 GEICGLTWQDIDFKCRTLTVRRTVQRIRVKGEAKKTKIVILPPKSKSSFRE----IPIPT 255 Query: 222 NLNIQLPLFRGI--------RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 ++ L R +P P + ++ + LGLP S H+LRH+ A++ Sbjct: 256 SVFAMLKNLRSTPEHYILSDSTEPKEPRMMYYDYVEILKELGLP-SVKFHSLRHAAASNA 314 Query: 274 LSNGGDLRSIQSILGHFRLSTTQ---IYTNVNSK 304 + G D++++ +LGH R+ T +++N++ K Sbjct: 315 IEAGFDVKTLSEVLGHSRIEMTMNLYVHSNMDRK 348 >gi|265753988|ref|ZP_06089343.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|333029238|ref|ZP_08457299.1| integrase family protein [Bacteroides coprosuis DSM 18011] gi|263235702|gb|EEZ21226.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|332739835|gb|EGJ70317.1| integrase family protein [Bacteroides coprosuis DSM 18011] Length = 390 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 18/149 (12%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219 ++ C GLR+S+ L P +I GKG+ I + + K ++ P Sbjct: 240 FIFACFTGLRLSDMYKLAPIHIFKTPD-----GKGEYIDME--MQKTEKPVI-----IPL 287 Query: 220 DLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275 LP +GI P V R +R+ G+ + H RH+F T +L+ Sbjct: 288 SEEAKRWLPKPKGITTPFFDIPTTQTVIGRALRKWAEAAGVEKHISFHCSRHTFGTMMLT 347 Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 G DL + ++GH + TT+IY + K Sbjct: 348 LGADLFTTSKLMGHTNIQTTEIYAKIVDK 376 >gi|83404870|ref|YP_424884.1| resolvase [Escherichia coli] gi|299836151|ref|YP_003717720.1| putative resolvase [Escherichia coli ETEC 1392/75] gi|46949067|gb|AAT07421.1| ResA [Escherichia coli] gi|83308595|emb|CAI79580.1| resolvase [Escherichia coli] gi|297374500|emb|CBL93575.1| putative resolvase [Escherichia coli ETEC 1392/75] Length = 261 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 36/180 (20%) Query: 153 DARNSAILYLLYGCGLRISEALSLT-------PQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 D R +L L+ G RI+EAL+LT P +TL+ Q R +P+ Sbjct: 57 DLRRKMLLATLWNTGARINEALALTRGDFSLAPPYPFVQLATLK-QRTEKAARTAGRMPA 115 Query: 206 VRKAILEYYDLCPFD----------LNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRY 253 ++ + L P + +++P+ R + G+ +++ R +R + Sbjct: 116 GQQT----HRLVPLSDTWYVSQLQTMVATLKIPMERRNKRTGRTEKARIWEVTDRTVRTW 171 Query: 254 LG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +G + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 172 IGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|56419057|ref|YP_146375.1| phage integrase family site specific recombinase [Geobacillus kaustophilus HTA426] gi|56378899|dbj|BAD74807.1| site-specific recombinase (phage integrase family) [Geobacillus kaustophilus HTA426] Length = 180 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 10/160 (6%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 RN + L GLRIS+ L L ++++ LR + K K + + + PS+RK ++EY Sbjct: 26 RNYILFVLGINTGLRISDLLQLKKEDLLQTHLKLR-EKKTRKEKRIRIPPSIRKELIEYA 84 Query: 215 DLCPFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 L FR +G +P++ R +R+ Y+ L T HTLR +F H Sbjct: 85 K------TLKDGEYAFRSRQGGNRPIDRSTAYRILREAAEYVSLDEVGT-HTLRKTFGYH 137 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 D+ +Q + H T Y VN M++ Sbjct: 138 FYQQTKDVAMLQELFNHSSPHITLKYIGVNQDAMDKAMLK 177 >gi|299069268|emb|CBJ40533.1| putative integrase/recombinase protein [Ralstonia solanacearum CMR15] Length = 566 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 75/302 (24%), Positives = 121/302 (40%), Gaps = 40/302 (13%) Query: 27 IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 IERG LS LT + D + FL + + + R + + R F T + Sbjct: 256 IERGRPLSSLTTE----DAIAYRGFLRRPSPHERWVGPARPRASADWRPF-----TDGLS 306 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNSL--PRALNEKQ-AL--TL 137 RS+ SLS + + ++L +++ + + +R ++ +L A +E + AL TL Sbjct: 307 ARSIAYSLSVLGAMFRWLIQQRYALANPFAGIKVRGGGRTAALDASHAFSEGEWALVRTL 366 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGKG 194 D + E R +L Y GLR SE ++ I D+ L + GKG Sbjct: 367 ADGLEWSYGWEAP-AAQRLRFVLDFAYATGLRASELITARLGGIEADRQGDHWLSLIGKG 425 Query: 195 DKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 + V L P R A+ Y L N Q PL + P R +R Sbjct: 426 SRAGKVALPPLARTALDRYLVERGLPVTQARWNPQTPLIGALGLDPDGGITGSRLWSVMR 485 Query: 252 RYLGLPLS---------------TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 R+ + + H +RH+ A+H L+ G +L +++ L H +STT Sbjct: 486 RFFRVAADLIEHDHTALAEKLRKASPHWMRHTHASHALARGAELTTVRDNLRHASISTTS 545 Query: 297 IY 298 IY Sbjct: 546 IY 547 >gi|289751271|ref|ZP_06510649.1| integrase [Mycobacterium tuberculosis T92] gi|289691858|gb|EFD59287.1| integrase [Mycobacterium tuberculosis T92] Length = 166 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 62/147 (42%), Gaps = 17/147 (11%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212 D R ++ L GLR +EA ++MD L + GKG K RIVP I + Sbjct: 22 DRRTELMIRLAGEAGLRRAEAAQAHTGDLMDG-GLLLVHGKGGKRRIVP--------ISD 72 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 Y D P G G V + R L P T HTLRH +AT Sbjct: 73 YLAALIRDTPHGYLFP--NGTGGHLTAEHVGKLVSRAL------PGDATMHTLRHRYATR 124 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYT 299 +LR++Q +LGH + TT+ YT Sbjct: 125 AYRGSHNLRAVQQLLGHASIVTTERYT 151 >gi|262381530|ref|ZP_06074668.1| transposase [Bacteroides sp. 2_1_33B] gi|262296707|gb|EEY84637.1| transposase [Bacteroides sp. 2_1_33B] Length = 403 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 67/148 (45%), Gaps = 22/148 (14%) Query: 162 LLYGC--GLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVP--LLPSVRKAILEYYDL 216 ++ C GL + LTP+NI + L I K K + L + K+IL+ YD Sbjct: 249 FIFSCYTGLSYVDVCELTPENIKLSFDGNLWIIKKRHKTSVTSNIRLLDIPKSILQKYDG 308 Query: 217 CPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 +LP L I + +N Y++++ G+ T H RHSFAT Sbjct: 309 ---------KLPNGKLLPVISNQKMND-----YLKEIATVCGINKRITFHVARHSFATLS 354 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +S G + S+ +LGH + TTQIY + Sbjct: 355 ISYGVPIESVSKMLGHTNIRTTQIYAKI 382 >gi|326626310|gb|EGE32654.1| resolvase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 260 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 94/223 (42%), Gaps = 48/223 (21%) Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL------------LYGCGLR 169 S LP A++ AL L + H + + SA+L+ L+ G R Sbjct: 15 SALLPVAIDYPAALALRQMAMQHDDYPKYLLAPEVSALLHYVPDLHRRMLLATLWNTGAR 74 Query: 170 ISEALSLT-------PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222 I+EAL+LT P +TL+ Q R +PS + + L P N Sbjct: 75 INEALALTRGDFSLAPPYPFVQLATLK-QRAEKAARTAGRMPSGSQP----HRLVPLSDN 129 Query: 223 ----------LNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG------------LPL 258 +++PL R R G+ +++ R +R ++G + Sbjct: 130 QYVSELQMMVATLKIPLERRNRRTGRTEKARLWEITDRTVRTWIGEEVEAAAADDVTFSV 189 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T HT RHS+A H+L G L+ +Q+++GH +S+T++YT V Sbjct: 190 PVTPHTFRHSYAMHMLYAGIPLKVLQALMGHKSVSSTEVYTKV 232 >gi|325287290|ref|YP_004263080.1| integrase family protein [Cellulophaga lytica DSM 7489] gi|324322744|gb|ADY30209.1| integrase family protein [Cellulophaga lytica DSM 7489] Length = 423 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 75/152 (49%), Gaps = 26/152 (17%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQG---------KGDKIRIVPLLPSVRKAI 210 ++ C G+ + ++LTP +++ L I G K + VPLL + Sbjct: 253 FVFSCYTGISYVDIMNLTPNHLV-----LGIDGGYWIMTKRQKTNTTVKVPLLGQALDIV 307 Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 +Y D P N LP+ + + LN +++++ ++G+ + T H RH+FA Sbjct: 308 NKYKD-HPVTAVNNSLLPV---LTNEKLN-----MFLKEVANFVGINKNLTFHMARHTFA 358 Query: 271 THL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T + LSNG + ++ +LGH +++TTQIY V Sbjct: 359 TTVTLSNGVPIETVSKLLGHSKIATTQIYARV 390 >gi|107026246|ref|YP_623757.1| phage integrase [Burkholderia cenocepacia AU 1054] gi|116692567|ref|YP_838100.1| phage integrase family protein [Burkholderia cenocepacia HI2424] gi|105895620|gb|ABF78784.1| phage integrase [Burkholderia cenocepacia AU 1054] gi|116650567|gb|ABK11207.1| phage integrase family protein [Burkholderia cenocepacia HI2424] Length = 398 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 77/192 (40%), Gaps = 34/192 (17%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM-------DDQSTLRIQGKGDKIRIVPLLPSVR 207 R + LLY GLRI+EA T ++ L + GKG + R+VP + Sbjct: 208 RARWLFTLLYLGGLRITEAADTTMGQFFCRRDANGHERWWLDVTGKGGRQRLVPATDEMM 267 Query: 208 KAILEY---YDLCPFDLN---LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL--- 258 + Y + L L+ + LP G KPL R ++Q+ R+ L Sbjct: 268 AELTRYRRTHGLPALPLDGEPTPLVLPF--GQARKPLTRAALHRIVKQVFRHAAGRLRAN 325 Query: 259 ------------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 +AH LRHS +H+ DLR ++ LGH L+TT Y + + Sbjct: 326 GETGEQAARVLEQASAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHADD--- 382 Query: 307 GDWMMEIYDQTH 318 DW ++ H Sbjct: 383 -DWRHRETEEKH 393 >gi|94985803|ref|YP_605167.1| phage integrase [Deinococcus geothermalis DSM 11300] gi|94556084|gb|ABF45998.1| phage integrase [Deinococcus geothermalis DSM 11300] Length = 285 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 56/227 (24%), Positives = 95/227 (41%), Gaps = 29/227 (12%) Query: 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 R + ++ F + +R++ L++ PR L ++ ++ + E Sbjct: 67 RKQTALERFCHWALQRELLDRDPTLHLERPSLPPPHPRGLRREE----IERIFAVIPAE- 121 Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLL-PSV 206 R++ + L++ GLRI EAL + +++ L + GKG + R V L P + Sbjct: 122 ---QVRDALLFRLVFETGLRIGEALGVHVEDLDLTRGDEHLTVLGKGSRRRTVLLDDPKL 178 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGI---RGKPLNPGVFQRYIRQLRRYLGLP----LS 259 + Y + PLF+ RG PL RY R+ G ++ Sbjct: 179 VNMLRRYLRTLGY-----THGPLFQATKNGRGGPL------RYQSVQERWQGYAERAGVT 227 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 T H LRHS AT L++ G L +I+ LGH + TT Y V+ + Sbjct: 228 CTLHQLRHSHATELVNGGVSLATIRKRLGHQHIQTTLRYAEVSDQTA 274 >gi|227524410|ref|ZP_03954459.1| phage integrase family site specific recombinase [Lactobacillus hilgardii ATCC 8290] gi|227088641|gb|EEI23953.1| phage integrase family site specific recombinase [Lactobacillus hilgardii ATCC 8290] Length = 401 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 3/71 (4%) Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 G P+ P + ++++ LG P + H+LRH+ AT LL +G +++ IQ+ LGH R++T Sbjct: 313 GIPVTPNTIKYQCDRIQKELGFPFN--FHSLRHTHATMLLEHGANIKDIQARLGHSRIAT 370 Query: 295 T-QIYTNVNSK 304 T Y++V K Sbjct: 371 TMDTYSHVTHK 381 >gi|219558655|ref|ZP_03537731.1| integrase [Mycobacterium tuberculosis T17] gi|260187668|ref|ZP_05765142.1| integrase [Mycobacterium tuberculosis CPHL_A] gi|260201779|ref|ZP_05769270.1| integrase [Mycobacterium tuberculosis T46] gi|289444189|ref|ZP_06433933.1| integrase [Mycobacterium tuberculosis T46] gi|289448303|ref|ZP_06438047.1| integrase [Mycobacterium tuberculosis CPHL_A] gi|289570821|ref|ZP_06451048.1| integrase [Mycobacterium tuberculosis T17] gi|289417108|gb|EFD14348.1| integrase [Mycobacterium tuberculosis T46] gi|289421261|gb|EFD18462.1| integrase [Mycobacterium tuberculosis CPHL_A] gi|289544575|gb|EFD48223.1| integrase [Mycobacterium tuberculosis T17] Length = 332 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 73/178 (41%), Gaps = 19/178 (10%) Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 ++SLP+ KQ + + + D R ++ L GLR +EA ++ Sbjct: 159 ADSLPKVRCPKQPPRPAGDDVWQAALAK--ADRRTELMIRLAGEAGLRRAEAAQAHTGDL 216 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241 MD L + GKG K RIVP I +Y D P G G Sbjct: 217 MDG-GLLLVHGKGGKRRIVP--------ISDYLAALIRDTPHGYLFP--NGTGGHLTAEH 265 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 V + R LP T HTLRH +AT +LR++Q +LGH + TT+ YT Sbjct: 266 VGKLVSR------ALPGDATMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYT 317 >gi|302595333|ref|YP_003829048.1| resolvase [Escherichia coli] gi|302310069|gb|ADL13942.1| TnpR [Escherichia coli] Length = 311 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 36/180 (20%) Query: 153 DARNSAILYLLYGCGLRISEALSLT-------PQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 D R +L L+ G RI+EAL+LT P +TL+ Q R +P+ Sbjct: 108 DLRRKMLLATLWNTGARINEALALTRGDFSLAPPYPFVQLATLK-QRTEKAARTAGRMPA 166 Query: 206 VRKAILEYYDLCPFD----------LNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRY 253 ++ + L P + +++P+ R + G+ +++ R +R + Sbjct: 167 GQQT----HRLVPLSDTWYVSQLQTMVATLKIPMERRNKRTGRTEKARIWEVTDRTVRTW 222 Query: 254 LG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +G + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 223 IGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 282 >gi|217969499|ref|YP_002354733.1| integrase [Thauera sp. MZ1T] gi|217506826|gb|ACK53837.1| integrase family protein [Thauera sp. MZ1T] Length = 190 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 11/153 (7%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR-------IQGKGDKIRIVPLLPSV 206 ARN A++ + + GLR E +L +++D ++ Q KG + R+V L + Sbjct: 26 ARNRALVLMSHWAGLRAKEIAALRCCDVVDGAGRMKEEVLLSVDQTKGKRGRVVYLGTKI 85 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 RK + Y CP + + P + RG N ++ +L + G+ ++H+ Sbjct: 86 RKELATYLRACPPRSDASPLFPTQKAPTRGFTAN--TMAQFFHKLYKEAGIE-GASSHSG 142 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 R S+ T L G + ++++ GH +STT +Y Sbjct: 143 RRSYLTTLADKGTSIHILKTLAGHQSISTTAVY 175 >gi|209916841|ref|YP_002291161.1| resolvase [Escherichia coli SE11] gi|209915267|dbj|BAG80339.1| resolvase [Escherichia coli SE11] Length = 268 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 36/180 (20%) Query: 153 DARNSAILYLLYGCGLRISEALSLT-------PQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 D R +L L+ G RI+EAL+LT P +TL+ Q R +P+ Sbjct: 66 DLRRKMLLATLWNTGARINEALALTRGDFSLAPPYPFVQLATLK-QRTEKAARTAGRMPA 124 Query: 206 VRKAILEYYDLCPFD----------LNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRY 253 ++ + L P + +++P+ R + G+ +++ R +R + Sbjct: 125 GQQT----HRLVPLSDAWYVSQLQTMVATLKIPMERRNKRTGRTEKARIWEVTDRTVRTW 180 Query: 254 LG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +G + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 181 IGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240 >gi|42526683|ref|NP_971781.1| phage integrase family site specific recombinase [Treponema denticola ATCC 35405] gi|41816876|gb|AAS11662.1| site-specific recombinase, phage integrase family [Treponema denticola ATCC 35405] Length = 354 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 9/146 (6%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTL-RIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 L+ C GLRIS+ SL + ++ TL +IQ K + LP +AI + L Sbjct: 198 FLFACCTGLRISDLKSLKWGGVSFEKKTLTKIQ---QKTKRAVYLPIKDEAIAFLHLLAE 254 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278 + N + +F + N +Y+ + + G+ H RH+ AT LL +G Sbjct: 255 ENPNRTDEDFIFPHVATTGTN---MNQYLIEWGKRAGVRQKIGWHLARHTHATLLLESGA 311 Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSK 304 DL ++Q +LGH ++STT YT V + Sbjct: 312 DLYTVQKLLGHTKISTTAQYTQVTDR 337 >gi|291515442|emb|CBK64652.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 409 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 2/64 (3%) Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV-NSK 304 +R + R+ GL + T HT RH+FAT + L+ G L ++ +LGH ++TTQIY + N K Sbjct: 330 LRHVARHAGLSFNPTTHTGRHTFATTVTLTQGVPLETVSKMLGHKHITTTQIYAKITNDK 389 Query: 305 NGGD 308 G D Sbjct: 390 IGRD 393 >gi|242241242|ref|YP_002989423.1| integrase family protein [Dickeya dadantii Ech703] gi|242133299|gb|ACS87601.1| integrase family protein [Dickeya dadantii Ech703] Length = 327 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 54/231 (23%), Positives = 93/231 (40%), Gaps = 30/231 (12%) Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 I F ++R I ++ R + + L K +I T N L LP Sbjct: 107 ILEFRTRRLYDGISSSTVNRDIYRLSGMFSALIKLEIYTGENPLK--------ELPPLPE 158 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 ++ +T + + +T D A+L L G R EA +L + +M ++ T Sbjct: 159 KQPTVTFLTESEIARLLDTMEGDQYRLAVLCL--STGARWGEASTLRAEQVMHNRVTF-T 215 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 + K K R +P+ V + I F ++ + + + KP Sbjct: 216 ETKNGKNRTIPISEEVTRIIKTRETGKLFKVDYSAFCEQIKAV--KP------------- 260 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +P +H LRH+FA+H + NGG+L ++Q ILGH + T Y ++ Sbjct: 261 ----DIPKGQASHILRHTFASHFVMNGGNLVALQQILGHASIQQTMTYAHL 307 >gi|320160972|ref|YP_004174196.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] gi|319994825|dbj|BAJ63596.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] Length = 337 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 57/245 (23%), Positives = 112/245 (45%), Gaps = 30/245 (12%) Query: 92 LSGIKSFLKYLKKRKITTESNI------LNMRNLKKSNSLPRALNE------KQALTLVD 139 L+ +K+F +YL K+ + N+ + R+ K LP+ + ++ + + Sbjct: 89 LTAVKNFYEYLAAEKLA-DINLPRVKLLIRQRSRKPGQRLPQFPKDYIEILLEKMQSFIP 147 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 + + + +++ R+ A L L GLR+ EA +L ++ ++ I GKG++ I Sbjct: 148 DATMDETERIRFL--RDRAFLLTLADTGLRVHEACNLRRGDMDWNEGKALIIGKGNREAI 205 Query: 200 VPLLPSVRKAILEYY-DLCPFDLNLN---IQLPLF------RGIRGKPLNPGVFQRYIRQ 249 V A+ EY D + LPLF G + KP+ + ++Q Sbjct: 206 VRFSTRTIHALKEYLTQRAALDSSSGKPLSSLPLFARHDKGSGKKIKPITTTTGRNIVKQ 265 Query: 250 -LRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK-- 304 ++ +L + L T H+ RH F T +L + G+L+ Q + H ++ TQ Y +++++ Sbjct: 266 RVKEFLDEEISLEITPHSFRHYFVTRVLVSSGNLKLAQELARHRNIAVTQRYAHLSNEEL 325 Query: 305 NGGDW 309 + G W Sbjct: 326 DQGYW 330 >gi|325856041|ref|ZP_08171930.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325483713|gb|EGC86677.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 407 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 14/147 (9%) Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 ++ C GL + +LTP+++ MDD+ + + + + LL + K I+ Y Sbjct: 249 FIFSCFTGLSYIDVANLTPEHLVNMDDKQWIMTKRQKTNVESNILLLDIPKQIIAKYSNK 308 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 + LF + + +N Y++++ + + T H RH+FAT LS G Sbjct: 309 TYR-----DSKLFPVLSNQKMNA-----YLKEIADICDIGKNLTFHMARHTFATMSLSKG 358 Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSK 304 + S+ +LGH + TTQIY + +K Sbjct: 359 VPMESVSKMLGHTNIKTTQIYARITNK 385 >gi|224825788|ref|ZP_03698892.1| integrase family protein [Lutiella nitroferrum 2002] gi|224602012|gb|EEG08191.1| integrase family protein [Lutiella nitroferrum 2002] Length = 342 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/189 (28%), Positives = 87/189 (46%), Gaps = 29/189 (15%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQN----IMDDQSTLRIQG--KGDKIRIVPLLPSVR- 207 R++A+L LL GCGLR+S +L N ++D + L ++ KG K R++P+ Sbjct: 132 RDAAMLALLLGCGLRVSGLAALNEGNLTTQVVDGEPRLALKPIEKGGKERLIPVPREADL 191 Query: 208 --KAILEYYDLCPFDLNL------------NIQLPL--FRGIRGKPLNPGVFQRYIRQLR 251 + +E+ DL D + N + P + G R + GVF I++ Sbjct: 192 LLRVYMEHPDLEGIDRSTPSGDRVLFITTRNRRCPAHEYYGERRRFSTRGVFA-MIQRHG 250 Query: 252 RYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 + G+P H LRH F T L DL Q+++GH +T IYT++ + + Sbjct: 251 KAAGIPEEQLNPHALRHLFGTELAEGDIDLLERQNLMGHKDPKSTAIYTHLAFRK----L 306 Query: 311 MEIYDQTHP 319 + DQ +P Sbjct: 307 TKSVDQANP 315 >gi|299141859|ref|ZP_07034994.1| mobilizable transposon protein, int protein [Prevotella oris C735] gi|298576710|gb|EFI48581.1| mobilizable transposon protein, int protein [Prevotella oris C735] Length = 418 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 NP R +R G+ + H RH+FAT L+NG D+ ++ +LGH + TTQ+Y Sbjct: 335 NPSWISRSLRAWIEKAGIQKHLSFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVY 394 Query: 299 TNV 301 V Sbjct: 395 AKV 397 >gi|260880928|ref|ZP_05403159.2| prophage LambdaBa02, site-specific recombinase, phage integrase family [Mitsuokella multacida DSM 20544] gi|260849940|gb|EEX69947.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Mitsuokella multacida DSM 20544] Length = 361 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 63/246 (25%), Positives = 108/246 (43%), Gaps = 46/246 (18%) Query: 84 GDRSLKRSLSGIKSFLKYLKKRKI-------TTESNILNMRNLKKSNSLPRALNEKQALT 136 D +++ + I+S Y K + I + ++ + R +K LP ++NE Q + Sbjct: 115 ADTTMRTRSTKIQSLFLYAKHKGIIEHVPEFSARGSMFHTRTMK---ILP-SVNEIQHI- 169 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI------ 190 ++ V H+S+ + ++ L+ G+R+ EA L +NI T+ I Sbjct: 170 -LEYVREHSSYPYLY------HMMLLIVSSGIRVGEACVLQWKNIDMANDTISILNTVTR 222 Query: 191 ---------QGKGDK-IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240 + K K IRI+P+ SV + I E P+ +F G + + P Sbjct: 223 GQTNFELSDRAKTAKSIRIIPVEYSVLEIINEIPKESPY---------VFFGRKKSFVPP 273 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR-LSTTQIYT 299 R R+L LG P + LRH AT LL+NG D++++ LGH ++T +YT Sbjct: 274 ATINRNARKLFDALGYP-KLRMYDLRHFHATQLLANGVDIKTVSHRLGHTSPMTTLNVYT 332 Query: 300 NVNSKN 305 + N Sbjct: 333 HYVEDN 338 >gi|229015025|ref|ZP_04172100.1| Tyrosine recombinase [Bacillus mycoides DSM 2048] gi|228746267|gb|EEL96195.1| Tyrosine recombinase [Bacillus mycoides DSM 2048] Length = 358 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 68/304 (22%), Positives = 126/304 (41%), Gaps = 42/304 (13%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK---------RRTQKIGD 85 TL +Y D R F +L +E+ I + I+ +S++++ K + Q + + Sbjct: 43 TLLNYVYDFRVFFNWLL--SEQIIEFKPIKDISFSDLENLKKKDVENFMRFLKLQQNMQN 100 Query: 86 RSLKRSLSGIKSFLKYL------------------KKRKITTESNILNMRNLKKSNSLPR 127 S+ R +S +KS KYL K +I + LN R + + + Sbjct: 101 SSVNRKISALKSLFKYLTSLSENDDGECYFYRNVMAKIEIHKDKETLNARAKRMRSKIFH 160 Query: 128 ALNEKQALTLV--DNVLLHTSHETKWI---DARNSAILYLLYGCGLRISEALSLTPQNIM 182 ++++ L + ++ T H+ + R+ AIL L G G+R+SE L ++I Sbjct: 161 NDDDQEFLNYIKYEHEKSLTKHQLFYFLRDKDRDVAILSLFLGSGIRVSELADLRMEDIN 220 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKP 237 + + + KG+K V + P + +Y ++ P N+ L ++ +P Sbjct: 221 LKERLIDVIRKGNKEDSVWITPIALNDLEKYMEIRDKKYAPGKELKNVFLSKYKHT-AQP 279 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L+ Q + + + G +S H LRH+ A L D + LGH T + Sbjct: 280 LSVRAIQDIVEKYTKAYGKRMS--PHKLRHTLANKLYMEEKDSLQVMQQLGHTSQDTALL 337 Query: 298 YTNV 301 YT + Sbjct: 338 YTQL 341 >gi|239828168|ref|YP_002950792.1| integrase [Geobacillus sp. WCH70] gi|239808461|gb|ACS25526.1| integrase family protein [Geobacillus sp. WCH70] Length = 329 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 66/304 (21%), Positives = 131/304 (43%), Gaps = 25/304 (8%) Query: 8 EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67 + + F++ E+ +L++ EI R T+Q Y + +F E+ I + R Sbjct: 24 DAIDFQIALEK--FLEDCEI-RNCRPQTIQYYR---NELSVFYKILREQGIEVNIYRMTP 77 Query: 68 YTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESN--ILNMRNLK-KSN 123 + I + QK ++ L +++F +L++ KI ++ ++ LK + Sbjct: 78 EIIKQNVILYMKNQKNCKTVTINTRLRALRAFFNFLEREKIISKKQNPFHEIKLLKDRKK 137 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 ++P E+ ++L + + R+ I+ LL G+R SE + + +I Sbjct: 138 AVPTFTKEE------IHILFKQPNLRTFTGVRDLTIMMLLLETGIRASECVGIRLGDIDF 191 Query: 184 DQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDL-CPFDLNLNIQLPLFRGIRGKPLNPG 241 +S + IQ KG + R VP+ +++ + +Y + D + LF + PL Sbjct: 192 QRSRILIQNTKGYRQRYVPIQKQMKEQLKKYLAIRGTLDHDY-----LFVSVDDTPLTKR 246 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 Q I + G+ T H RH+FA + G + +Q++LGH + + Y N+ Sbjct: 247 QMQAQIESYGKKCGI--HATCHKFRHTFARLSVEAGAGIFELQAVLGHSSMEMVKHYVNL 304 Query: 302 NSKN 305 S + Sbjct: 305 FSDD 308 >gi|10955295|ref|NP_052636.1| resolvase [Escherichia coli O157:H7 str. Sakai] gi|75994510|ref|YP_325624.1| resolvase [Escherichia coli O157:H7 EDL933] gi|149930783|ref|YP_001294712.1| w0048 [Escherichia coli] gi|168803077|ref|ZP_02828084.1| resolvase [Escherichia coli O157:H7 str. EC508] gi|208811330|ref|ZP_03253090.1| resolvase [Escherichia coli O157:H7 str. EC4206] gi|208817399|ref|ZP_03258428.1| resolvase [Escherichia coli O157:H7 str. EC4045] gi|208823403|ref|ZP_03263720.1| resolvase [Escherichia coli O157:H7 str. EC4042] gi|209395611|ref|YP_002268421.1| resolvase [Escherichia coli O157:H7 str. EC4115] gi|217329834|ref|ZP_03445909.1| resolvase [Escherichia coli O157:H7 str. TW14588] gi|254667484|ref|YP_003082170.1| resolvase [Escherichia coli O157:H7 str. TW14359] gi|261225662|ref|ZP_05939943.1| resolvase [Escherichia coli O157:H7 str. FRIK2000] gi|261257882|ref|ZP_05950415.1| resolvase [Escherichia coli O157:H7 str. FRIK966] gi|37695771|gb|AAR00433.1|AF401292_34 w0048 [Escherichia coli] gi|3337027|dbj|BAA31786.1| resolvase [Escherichia coli O157:H7 str. Sakai] gi|3822178|gb|AAC70132.1| resolvase (protein d) [Escherichia coli O157:H7] gi|17384578|emb|CAC79982.1| orf807 [Escherichia coli] gi|189375194|gb|EDU93610.1| resolvase [Escherichia coli O157:H7 str. EC508] gi|208729960|gb|EDZ79177.1| resolvase [Escherichia coli O157:H7 str. EC4206] gi|208730576|gb|EDZ79275.1| resolvase [Escherichia coli O157:H7 str. EC4045] gi|208736998|gb|EDZ84683.1| resolvase [Escherichia coli O157:H7 str. EC4042] gi|209157066|gb|ACI34500.1| resolvase [Escherichia coli O157:H7 str. EC4115] gi|217317065|gb|EEC25498.1| resolvase [Escherichia coli O157:H7 str. TW14588] gi|254595836|gb|ACT75196.1| resolvase [Escherichia coli O157:H7 str. TW14359] Length = 268 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 56/226 (24%), Positives = 95/226 (42%), Gaps = 52/226 (23%) Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL------------LYGCGL 168 + SLP A++ AL L ++H + SA+L+ L+ G Sbjct: 22 QPASLPVAIDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVPNLHRKMLLATLWNTGA 81 Query: 169 RISEALSLT-------PQNIMDDQSTL------------RIQGKGDKIRIVPLLPSVRKA 209 RI+EAL+LT P +TL R+ R+VPL S + Sbjct: 82 RINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAGRMPAGQQTHRLVPLSDSWYVS 141 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG------------ 255 L+ + +++P+ R R G+ +++ R +R ++G Sbjct: 142 QLQ-------TMVATLKIPMERRNRRTGRTEKARIWEVTDRTVRTWIGEAVAAAAADGVT 194 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+ +QS++GH +S+ ++YT V Sbjct: 195 FSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSKEVYTKV 240 >gi|313677913|gb|ADR74174.1| putative integrase [uncultured bacterium 52B7] Length = 404 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 68/157 (43%), Gaps = 35/157 (22%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------GDKIRIVPL---LP 204 A L+ Y GLR S+ LTP+N +R+ GK G +IR+ PL Sbjct: 236 AFLFCCY-TGLRYSDFCQLTPENF------IRVNGKRWLYFKSVKTGVEIRL-PLHLLFE 287 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 S IL+ Y P P N V + +R+L G+ T H Sbjct: 288 SRALGILDRY-------------PDIGSFAALPCNSEV-NKQLRKLAGLCGIKKRITYHV 333 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 RH+ AT L+ G + ++Q +LGH + TTQIY+ V Sbjct: 334 SRHTCATLLVHQGVAITTVQKLLGHTSVKTTQIYSEV 370 >gi|295133331|ref|YP_003584007.1| transposase [Zunongwangia profunda SM-A87] gi|294981346|gb|ADF51811.1| putative transposase [Zunongwangia profunda SM-A87] Length = 414 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 17/155 (10%) Query: 162 LLYGC--GLRISEALSLTPQNI---MDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYD 215 ++ C GL ++A +L N+ +D + + K + VPLL + IL+ Y Sbjct: 246 FVFACYTGLAYADAKALNKNNLQIGVDGNKWIYTRRSKTNTAVRVPLLAEAER-ILKRYK 304 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274 P LP++ + +Y++++ + + + + HT RH+FAT + L Sbjct: 305 THPKIDGTEKLLPVYSNQKT--------NQYLKEIAKEVKIKKQLSFHTARHTFATTITL 356 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV-NSKNGGD 308 +NG + ++ +LGH +LSTTQIY V +SK D Sbjct: 357 ANGVPIETVSKLLGHTKLSTTQIYARVIDSKISND 391 >gi|283957132|ref|ZP_06374596.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni 1336] gi|283791308|gb|EFC30113.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni 1336] Length = 223 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 86/189 (45%), Gaps = 21/189 (11%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTP 178 +KS LNE + + L +NVL + + ++ RNS ++ L+ GLRISEAL++ Sbjct: 33 EKSEEKLNYLNENEIIRL-NNVLEKEKAKKEVYNSFRNSLLIKLMLYGGLRISEALNVKL 91 Query: 179 ---QNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235 + + D+ + I GKG K + + LEY F N+ + + G Sbjct: 92 CDFEEVDDEILKISIIGKGGKEQFAFIKKEEVDDELEY-----FKENIQDSDYIMQTSTG 146 Query: 236 KPLNPG-----VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290 K LN V Y + L GL H LRH+ A L + G +L IQ IL H Sbjct: 147 KHLNRSNAFLIVNNIYAKALISKKGL------HLLRHTLAMRLTAKGTNLVVIQKILRHA 200 Query: 291 RLSTTQIYT 299 L+TT IY Sbjct: 201 NLNTTTIYA 209 >gi|193065925|ref|ZP_03046985.1| resolvase [Escherichia coli E22] gi|192926429|gb|EDV81063.1| resolvase [Escherichia coli E22] Length = 236 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 81/174 (46%), Gaps = 38/174 (21%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQ-------GKG-----DKI- 197 D R + L+ G RI+EAL++TP+++ D + +R++ G+G +KI Sbjct: 49 DERQRMLFATLWITGPRITEALTITPEDLQLDGPRHCIRLRKLKQRQRGRGRPSADEKIA 108 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV-------FQRYIRQL 250 RIVPLL + Y D L L FR R +PL Q+ I + Sbjct: 109 RIVPLLDAA------YVD------QLRRYLATFRTGRRRPLFAVSRKTAWLWMQQAIDRA 156 Query: 251 RRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 R + LP + TLRHSFA HL N + +Q+ +GH R +T++Y V Sbjct: 157 REEVIEFALP-AINPKTLRHSFAMHLYFNHVPPKVVQAYMGHERYESTEVYLKV 209 >gi|237711591|ref|ZP_04542072.1| integrase [Bacteroides sp. 9_1_42FAA] gi|229454286|gb|EEO60007.1| integrase [Bacteroides sp. 9_1_42FAA] Length = 380 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 61/146 (41%), Gaps = 14/146 (9%) Query: 166 CGLRISEALSLTPQNIMDDQSTL---RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222 CGLRIS+ L ++I + K +PL K + E D P DL Sbjct: 237 CGLRISDIRKLRWRDISISGGQWLVSVVMTKTTNPVYIPLSSQAVKWLPERKDCAPEDL- 295 Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282 +F G+ N G ++ G+ + T HT RHS A LL+ G D+ + Sbjct: 296 ------VFGGLP----NAGNLCISLKNWADKAGVKKNVTFHTARHSCAVLLLTLGADIYT 345 Query: 283 IQSILGHFRLSTTQIYTNVNSKNGGD 308 + ILGH + TQ+Y + K D Sbjct: 346 VSKILGHRSVRATQVYAKIVDKKKDD 371 >gi|16519924|ref|NP_444044.1| DNA integration/recombination/inversion protein [Sinorhizobium fredii NGR234] gi|2497423|sp|P55639|Y4RF_RHISN RecName: Full=Putative integrase/recombinase y4rF gi|2182603|gb|AAB92472.1| DNA integration/recombination/inversion protein [Sinorhizobium fredii NGR234] Length = 425 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 70/294 (23%), Positives = 121/294 (41%), Gaps = 30/294 (10%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 L RGL T + R+FL + + Q + L+ + A + R + Sbjct: 136 LRTVRGLEPKTREGILLGGRRFLDWF----RHRHPGQNLEALTAEHVLAAVEHRLSLSAT 191 Query: 85 DRSLKRSLSGIKSFLKYL--KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 + + S I++FL++L + I+ + LP L +D + Sbjct: 192 SGTRTAATSHIRTFLRFLCWAGHHRQDLARIVPRTPYWRLAHLPPRLAWGDVRRAIDAI- 250 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRI 199 T + R+ A+L LL G+R E ++ Q+I D T + + KG + R+ Sbjct: 251 ----GATTPVAIRDRAVLLLLATTGIRNGELRAIRLQDI--DWRTGEVFIRRTKGKRDRV 304 Query: 200 VPLLPSVRKAILEYYDLC------PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 VPLL A+++Y P+ L L+ P+ P++ R +R+ R+ Sbjct: 305 VPLLEETGAALVDYILRARPKVDSPY-LFLSFTPPVGAFKSAAPVS-----RIVRKRLRH 358 Query: 254 LGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 G+ L AH LRHS AT L+ + + +LGH ++TT +Y V + Sbjct: 359 GGVELGRVAGAHLLRHSLATQLVGQRRPINEVADLLGHRSINTTALYVKVAASQ 412 >gi|116686767|ref|YP_840014.1| phage integrase family protein [Burkholderia cenocepacia HI2424] gi|116652482|gb|ABK13121.1| phage integrase family protein [Burkholderia cenocepacia HI2424] Length = 578 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 75/319 (23%), Positives = 127/319 (39%), Gaps = 65/319 (20%) Query: 27 IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 +ERG LS LT + D + F+ T + + +R + R F + + Sbjct: 258 VERGRALSSLTTE----DALAYRAFIRRPTPHERWVGPVRPRGAPDWRPF-----SGALS 308 Query: 85 DRSLKRSLSGIKSFLKYLKKRK--ITTESNILNMRNLKKSNSL--PRALNEKQAL---TL 137 RS +LS + + ++L +++ + + +R+ + + +L A E + L T+ Sbjct: 309 ARSAAYTLSVLGALFRWLIEQRYLLANPFAGVKVRDTRGATALDTSHAFTEGEWLLVRTI 368 Query: 138 VDNV-----LLHTSHETKWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDD---QS 186 D + + + W A + ++L Y GLR SE + T +I D + Sbjct: 369 ADGLEFGKRTADGAPQPGWTPAAAQRLRFILDFGYATGLRASELVGATLGDIETDAHGDA 428 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP------ 240 L++ GKG K V L P R A+ Y + +LP+ R +P P Sbjct: 429 WLKVIGKGSKAARVALPPLARTALDRYL--------VARRLPVTPA-RWRPDTPLIPRLA 479 Query: 241 -------------GVFQRYIRQLRRYLGLPLSTTAHTLR--------HSFATHLLSNGGD 279 V QR+ Q + AH LR H+ ATH L+ G + Sbjct: 480 EDDAAAITSVRLWKVMQRFFAQTADAVEADHPALAHKLRQASPHWMRHTHATHALARGAE 539 Query: 280 LRSIQSILGHFRLSTTQIY 298 L +++ L H +STT IY Sbjct: 540 LTTVRDNLRHASISTTSIY 558 >gi|296106652|ref|YP_003618352.1| hypothetical protein lpa_01609 [Legionella pneumophila 2300/99 Alcoy] gi|295648553|gb|ADG24400.1| hypothetical protein lpa_01609 [Legionella pneumophila 2300/99 Alcoy] Length = 191 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 66/151 (43%), Gaps = 9/151 (5%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLL-PSVRKAILE 212 R+S ++ + Y LR+SE +SL I Q L + K + I PL P +R Sbjct: 39 RDSTMILIAYRHELRVSELISLRWSQIDLKQGLLHVIRKKNGIPASHPLFGPEIRALRQL 98 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 D D +F R P+ F++ I + L L+T H LRHS Sbjct: 99 KRDYPETDY-------VFMTERKAPITADTFRKIIARAGEKAELGLATYPHMLRHSTGFK 151 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 L ++G D RSIQ LGH + T YT + S Sbjct: 152 LANDGRDTRSIQHYLGHKNIQHTVRYTEIAS 182 >gi|215428049|ref|ZP_03425968.1| integrase [Mycobacterium tuberculosis T92] Length = 167 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 62/147 (42%), Gaps = 17/147 (11%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212 D R ++ L GLR +EA ++MD L + GKG K RIVP I + Sbjct: 23 DRRTELMIRLAGEAGLRRAEAAQAHTGDLMDG-GLLLVHGKGGKRRIVP--------ISD 73 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 Y D P G G V + R L P T HTLRH +AT Sbjct: 74 YLAALIRDTPHGYLFP--NGTGGHLTAEHVGKLVSRAL------PGDATMHTLRHRYATR 125 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYT 299 +LR++Q +LGH + TT+ YT Sbjct: 126 AYRGSHNLRAVQQLLGHASIVTTERYT 152 >gi|254248336|ref|ZP_04941656.1| Phage integrase [Burkholderia cenocepacia PC184] gi|124874837|gb|EAY64827.1| Phage integrase [Burkholderia cenocepacia PC184] Length = 431 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 77/192 (40%), Gaps = 34/192 (17%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM-------DDQSTLRIQGKGDKIRIVPLLPSVR 207 R + LLY GLRI+EA T ++ L + GKG + R+VP + Sbjct: 241 RARWLFTLLYLGGLRITEAADTTMGQFFCRRDANGHERWWLDVTGKGGRQRLVPATDEMM 300 Query: 208 KAILEY---YDLCPFDLN---LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL--- 258 + Y + L L+ + LP G KPL R ++Q+ R+ L Sbjct: 301 AELARYRRTHGLPALPLDGEPTPLVLPF--GQARKPLTRAALHRIVKQVFRHAAGRLRAN 358 Query: 259 ------------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 +AH LRHS +H+ DLR ++ LGH L+TT Y + + Sbjct: 359 GKTGEQAARVLEQASAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHADD--- 415 Query: 307 GDWMMEIYDQTH 318 DW ++ H Sbjct: 416 -DWRHRETEEKH 426 >gi|28868299|ref|NP_790918.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato str. DC3000] gi|28851536|gb|AAO54613.1| integrase/recombinase XerD, putative [Pseudomonas syringae pv. tomato str. DC3000] Length = 296 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 63/276 (22%), Positives = 127/276 (46%), Gaps = 26/276 (9%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T ++Y T++FL + + + + ++ ++S + +I + + Q + S+K+ L+ Sbjct: 16 TRRAYARATQEFLTWC-----QVVGVPSLTEVSPLHVATWI-ELQMQTLAAPSVKQRLAA 69 Query: 95 IKSFLKYLKKRKITTESNILNMR---NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 I+ +L ++ + ++R + ++ P L +A L+D++ + T Sbjct: 70 IRHLFDWLVVGQVVPHNPAASVRGPSHTSRTGKTP-VLEPLEARQLLDSIDICTP----- 123 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQN--IMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 R+ A++ L+ RI AL++ ++ I + + +R++ KG K ++P S+ +A Sbjct: 124 AGLRDRALIALMVFSFARIGAALAMKVEDVYIQNQRLWVRLKEKGGKQHVMPCQHSL-EA 182 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGI-RG------KPLNPGVFQRYIRQLRRYLGLPLSTTA 262 L Y L ++ + + PLFR I RG L +R+ G+ S Sbjct: 183 YLHAY-LVETGIDNDPKGPLFRTIGRGTEQLSVNALPQANAHAMVRRRALAAGIKTSIGN 241 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 HT R + T L NGG L + ++ H TTQ+Y Sbjct: 242 HTFRATGITAYLKNGGTLENAAAMANHASTRTTQLY 277 >gi|75761190|ref|ZP_00741178.1| DNA integration/recombination/inversion protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228905242|ref|ZP_04069233.1| Tyrosine recombinase [Bacillus thuringiensis IBL 4222] gi|74491323|gb|EAO54551.1| DNA integration/recombination/inversion protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228854396|gb|EEM99063.1| Tyrosine recombinase [Bacillus thuringiensis IBL 4222] Length = 358 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 68/304 (22%), Positives = 126/304 (41%), Gaps = 42/304 (13%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK---------RRTQKIGD 85 TL +Y D R F +L +E+ I + I+ +S++++ K + Q + + Sbjct: 43 TLLNYVYDFRVFFNWLL--SEQIIEFKPIKDVSFSDLENLKKKDVENFMRFLKLQQNMQN 100 Query: 86 RSLKRSLSGIKSFLKYL------------------KKRKITTESNILNMRNLKKSNSLPR 127 S+ R +S +KS KYL K +I + LN R + + + Sbjct: 101 SSVNRKISALKSLFKYLTSLSENEDGECYFYRNVMAKIEIHKDKETLNARAKRMRSKIFH 160 Query: 128 ALNEKQALTLV--DNVLLHTSHETKWI---DARNSAILYLLYGCGLRISEALSLTPQNIM 182 ++++ L + ++ T H+ + R+ AIL L G G+R+SE L ++I Sbjct: 161 NDDDQEFLNYIKYEHEKSLTRHQLFYFLRDKERDVAILSLFLGSGIRVSELADLRMEDIN 220 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKP 237 + + + KG+K V + P + +Y ++ P N+ L ++ +P Sbjct: 221 LKERLIDVIRKGNKEDSVWITPIALNDLEKYMEIRGNKYAPGKELQNVFLSKYKHT-AQP 279 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L+ Q + + + G +S H LRH+ A L D + LGH T + Sbjct: 280 LSVRAIQDIVEKYTKAYGKRMS--PHKLRHTLANKLYMEEKDSLQVMQQLGHTSQDTALL 337 Query: 298 YTNV 301 YT + Sbjct: 338 YTQL 341 >gi|301309648|ref|ZP_07215588.1| integrase [Bacteroides sp. 20_3] gi|300832366|gb|EFK62996.1| integrase [Bacteroides sp. 20_3] Length = 185 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 22/153 (14%) Query: 162 LLYGC--GLRISEALSLTPQNIMDD----------QSTLRIQGKGDKIRIVPLLPSVRKA 209 ++ C GL S+ +L+ +N++ D + L + K I +PLLP V A Sbjct: 24 FVFACFTGLAFSDVATLSGENLVQDNLGDWWIRKGRIKLEHRRKASSISNIPLLP-VPLA 82 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 ILE Y P + LP+ + Y++++ + G+ + T H RH+F Sbjct: 83 ILEKYREHPVCIKKGCCLPVMCNQK--------MNSYLKEIADFCGIKKNLTTHVARHTF 134 Query: 270 ATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T + L+N L+ + +LGH TQ Y V Sbjct: 135 GTTVTLANNVPLQDVSVMLGHASTRMTQHYARV 167 >gi|284008591|emb|CBA75173.1| phage integrase [Arsenophonus nasoniae] Length = 300 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 63/249 (25%), Positives = 107/249 (42%), Gaps = 52/249 (20%) Query: 67 SYTEIRAFISKRRTQ---KIGDRSLKRSLSGIKSFLKYLKK-RKITTESNILNMRNLKKS 122 SY E R RRT+ K+ R++ L+ ++ LK+ + E+ + ++R K Sbjct: 66 SYREKRISGKLRRTERLDKVSPRTMNLELAYFRAMFNELKRLGEWKHENPVESIRPFK-- 123 Query: 123 NSLPRALNEKQALTLVD----NVLLHTSHETKWIDARNSAILYLLYGC---GLRISEALS 175 E+ ++ +D N+LL + +++ N +L ++ C G R SEA S Sbjct: 124 -------TEEAEMSFLDHDEINLLL-----KECVNSSNKHLLTVVKICLSTGARWSEAES 171 Query: 176 LTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232 L N+ S RI KG++ R VP+ + I E + Sbjct: 172 LRGCNV----SKFRITYTNTKGNRNRTVPISEELYNLIAEKKTI---------------- 211 Query: 233 IRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291 L + + L+R + LP +H LRH+FA+H + NGG++ +Q ILGH Sbjct: 212 ---GALFSSCYSAFRTALKRTKIVLPDGQMSHVLRHTFASHFMMNGGNILVLQRILGHTD 268 Query: 292 LSTTQIYTN 300 + T Y + Sbjct: 269 IKMTMRYAH 277 >gi|282879934|ref|ZP_06288658.1| site-specific recombinase, phage integrase family [Prevotella timonensis CRIS 5C-B1] gi|281306176|gb|EFA98212.1| site-specific recombinase, phage integrase family [Prevotella timonensis CRIS 5C-B1] Length = 406 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/201 (25%), Positives = 92/201 (45%), Gaps = 36/201 (17%) Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMD 183 PR++ +++ ++D E +W + R L++ + C GL IS+ +L +NI+ Sbjct: 222 PRSITKEELEHIID-------LEIEWENYRIVRDLFV-FSCFTGLAISDVRNLREENIVT 273 Query: 184 DQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-- 238 ++ L I+G+ K + V +LP + Y RGIR + Sbjct: 274 EEGELCIKGRRMKTKTPYRVQVLPPALTIMNRY-----------------RGIRAGFVFD 316 Query: 239 --NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTT 295 + + ++R +G+ T H RH+FA+ + LS G + ++ +LGH L TT Sbjct: 317 VPTTDIVLNGMHYIQRNIGMETPLTFHMARHTFASIITLSAGVPIETVSRMLGHTNLRTT 376 Query: 296 QIYTNVNSKNGGDWMMEIYDQ 316 Q+Y V+S+ W M+ Q Sbjct: 377 QVYAAVSSER-IHWDMQAIQQ 396 >gi|149911868|ref|ZP_01900469.1| Integrase [Moritella sp. PE36] gi|149805073|gb|EDM65098.1| Integrase [Moritella sp. PE36] Length = 341 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 20/149 (13%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211 I + + I+ + G RI EA+ L + + T KG K R VP+ + I Sbjct: 194 ISGQMTQIIKICLATGARIMEAIELKGAQVTKHKITF-TNTKGKKNRTVPISEDLYNEIY 252 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 + N LF GV +++ + LP H LRH+FA+ Sbjct: 253 Q-----------NTSGRLF------TCGYGVLHKWLNLC--FSDLPKGQATHILRHTFAS 293 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + + NGG++ +Q ILGH + T Y++ Sbjct: 294 YFMMNGGNILVLQKILGHADIKQTMAYSH 322 >gi|86740848|ref|YP_481248.1| phage integrase [Frankia sp. CcI3] gi|86742213|ref|YP_482613.1| phage integrase [Frankia sp. CcI3] gi|86567710|gb|ABD11519.1| phage integrase [Frankia sp. CcI3] gi|86569075|gb|ABD12884.1| phage integrase [Frankia sp. CcI3] Length = 411 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 75/153 (49%), Gaps = 14/153 (9%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ AIL L G R +E L + ++ +R+ KG R LP+ +A + + Sbjct: 217 RDRAILALGVSTGARAAELLGMRGADLDWGGQLVRVVRKG--TRAEQWLPASPEAFV-WL 273 Query: 215 DLCPFDLN---LNIQLPLFRGI--RG---KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 L D+ L P++R + RG +PLN + R+ R LG + T H LR Sbjct: 274 RLYLADVGGGVLGAGDPVWRTVYRRGGVHEPLNYEALRAVFRRANRRLGA--NWTMHDLR 331 Query: 267 HSFATHLLSNGG-DLRSIQSILGHFRLSTTQIY 298 H+ A ++ +G LR Q+ILGH LSTTQ+Y Sbjct: 332 HTCAIRMVRDGRLSLRDAQTILGHAHLSTTQLY 364 >gi|323475083|gb|ADX85689.1| XerC/D integrase-recombinase protein [Sulfolobus islandicus REY15A] gi|323477815|gb|ADX83053.1| XerC/D integrase-recombinase protein [Sulfolobus islandicus HVE10/4] Length = 291 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 67/273 (24%), Positives = 123/273 (45%), Gaps = 64/273 (23%) Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK--RKITTE------SNILNMRNLKKSNS 124 AFI+ G+ ++K + +K FL ++ K RK+T+E SN+LN K + Sbjct: 17 AFINALVLAGAGNGTIKLYSTAVKDFLDFINKDPRKVTSEDLNKWISNLLNREGKVKGDE 76 Query: 125 L----PRALNEKQALTLVDNVL--LHTS----------HETKWID-------------AR 155 + +++ + + V L L+ S E K +D + Sbjct: 77 VEKRRAKSVTIRYYIIAVRRFLKWLNVSVKPPIPKVRRKEVKALDESQIQKVLNMCKRTK 136 Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYY 214 + I+ LL GLR +E LS+ +++ + + +R++ K + R+V ++ + +Y Sbjct: 137 DKLIIRLLLDTGLRANELLSVLVKDVDLENNMIRVRNTKNGEERVVFFTDETKQLLRKY- 195 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ----RYIRQLRRYLG--LPLSTTAHTLRHS 268 ++GK L+ +F R+L+R LG + + H LRH+ Sbjct: 196 ------------------MKGKKLDEKLFDITYDALYRKLKR-LGNKVEIELRPHILRHT 236 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 FAT L G ++ ++Q +LGH + TTQIYT++ Sbjct: 237 FATLSLKRGINVITLQKLLGHKDIKTTQIYTHL 269 >gi|160944688|ref|ZP_02091915.1| hypothetical protein FAEPRAM212_02202 [Faecalibacterium prausnitzii M21/2] gi|158443872|gb|EDP20876.1| hypothetical protein FAEPRAM212_02202 [Faecalibacterium prausnitzii M21/2] Length = 416 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 75/188 (39%), Gaps = 48/188 (25%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK--------------------GDKIR 198 + + G G RISE + L +I + + IQ R Sbjct: 212 MFTFMLGTGCRISETVGLCWSDIDFESGFITIQHNLVYHDHEVGGCYFTMSTPKTAAGKR 271 Query: 199 IVPLLPSVRKAI-------LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL- 250 +P+LP VRKA+ E +C ++++ I +F G+P NP R I+++ Sbjct: 272 AIPILPEVRKALEQERTNQQELELVCEYEID-GISDFVFLNRFGQPQNPQTVNRAIKRIS 330 Query: 251 ----------------RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 L P S H LRH+F T L N +L+ IQ I+GH +ST Sbjct: 331 VAHNEAELEKAEKEKREPQLLPPFS--CHNLRHTFCTRLCENETNLKIIQDIMGHRDIST 388 Query: 295 T-QIYTNV 301 T +IY Sbjct: 389 TMEIYAEA 396 >gi|149200530|ref|ZP_01877541.1| Integron integrase; Phage integrase; Phage integrase N-terminal SAM-like domain [Lentisphaera araneosa HTCC2155] gi|149136379|gb|EDM24821.1| Integron integrase; Phage integrase; Phage integrase N-terminal SAM-like domain [Lentisphaera araneosa HTCC2155] Length = 400 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 36/176 (20%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR--------KAILEY 213 L+YG GLR E L Q++ + L I+ + ++ L P K++ Sbjct: 207 LMYGAGLRSGECYKLRMQDLDFKKKVLLIRDRLGVVKRETLFPESLFKELKVHIKSVKMV 266 Query: 214 YDLCPFDLNLNIQLP-----------------LF-----------RGIRGKPLNPGVFQR 245 Y N ++LP LF + ++ + +P QR Sbjct: 267 YSADQTIENAEVRLPDEYEAVEDEAKQWKWFWLFPSAVLKIGSDKQSLKREHYHPWHLQR 326 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +++ + + +LRHSFA H+L G D+R++Q++LGH + TT IY+ + Sbjct: 327 KFKEILKSTQIENQVNLDSLRHSFAVHMLEAGYDIRTVQTLLGHQDVKTTMIYSKL 382 >gi|226950799|ref|YP_002805890.1| site-specific recombinase, phage integrase family [Clostridium botulinum A2 str. Kyoto] gi|226840759|gb|ACO83425.1| site-specific recombinase, phage integrase family [Clostridium botulinum A2 str. Kyoto] gi|322807682|emb|CBZ05257.1| tyrosine recombinase xerD [Clostridium botulinum H04402 065] Length = 199 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/196 (22%), Positives = 91/196 (46%), Gaps = 12/196 (6%) Query: 122 SNSLPRALNEKQALTLVDNVLL-HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 S++ + L +++A+ L + ++ SH R+ A+ + Y CGLR SE + + Sbjct: 5 SSNKMKYLTQQEAIRLFNAIIFSDNSHA-----VRDLALFRVAYRCGLRASEISLIKLDD 59 Query: 181 IMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239 D+ L + KG + L + +KA+ Y + + + N + LF+ + P++ Sbjct: 60 YNADKGDLYCKRLKGSNNNTIRLDATTKKALDTY--IRDYKIFCNSE-TLFKSQKNNPIS 116 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAH--TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 +++ + + + H TL+H+ A HL + D++ +Q LGH +S T+I Sbjct: 117 RQTLDYLMKKYCKIANISDKSKHHFHTLKHTTAVHLAESEMDIKELQWWLGHKSVSNTEI 176 Query: 298 YTNVNSKNGGDWMMEI 313 Y +K M++ Sbjct: 177 YFQFTTKQQEKMYMKL 192 >gi|78060063|ref|YP_366638.1| Phage integrase [Burkholderia sp. 383] gi|77964613|gb|ABB05994.1| Phage integrase [Burkholderia sp. 383] Length = 578 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 75/318 (23%), Positives = 129/318 (40%), Gaps = 63/318 (19%) Query: 27 IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 +ERG LS LT + D + F+ T + + +R + R F + + Sbjct: 258 VERGRALSSLTTE----DAVAYRAFVRRPTPHERWVGPVRPRGAPDWRPF-----SGALS 308 Query: 85 DRSLKRSLSGIKSFLKYLKKRK--ITTESNILNMRNLKKSNSL--PRALNEKQAL---TL 137 RS +LS + + ++L +++ + + +R+ + +N+L A E + L T+ Sbjct: 309 ARSAAYTLSVLGALFRWLIEQRYLLANPFAGVKVRDTRGANALDTSHAFTEGEWLLVRTI 368 Query: 138 VDNVLLHTS-----HETKWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDD---QS 186 D + S ++ W A + ++L Y GLR SE + T +I D + Sbjct: 369 ADGLEFRKSTGTGTPQSGWTPAAAQRLRFILDFGYATGLRASELVGATLGDIETDAHGDA 428 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF--RGIRGKPLNPG--- 241 L++ GKG K V L P R + + + +LP+ R PL P Sbjct: 429 WLKVIGKGSKAARVALPPLARTGLDRFL--------VARRLPVTPSRWRPDTPLIPSLAE 480 Query: 242 -------------VFQRYIRQLRRYLGL--PL------STTAHTLRHSFATHLLSNGGDL 280 V QR+ Q + P + H +RH+ ATH L+ G +L Sbjct: 481 DGAAAITSVRLWKVMQRFFAQTADQVDADNPALAQKLRQASPHWMRHTHATHALARGAEL 540 Query: 281 RSIQSILGHFRLSTTQIY 298 +++ L H +STT IY Sbjct: 541 TTVRDNLRHASISTTSIY 558 >gi|107022990|ref|YP_621317.1| phage integrase [Burkholderia cenocepacia AU 1054] gi|105893179|gb|ABF76344.1| phage integrase [Burkholderia cenocepacia AU 1054] Length = 578 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 75/319 (23%), Positives = 127/319 (39%), Gaps = 65/319 (20%) Query: 27 IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 +ERG LS LT + D + F+ T + + +R + R F + + Sbjct: 258 VERGRALSSLTTE----DALAYRAFIRRPTPHERWVGPVRPRGAPDWRPF-----SGALS 308 Query: 85 DRSLKRSLSGIKSFLKYLKKRK--ITTESNILNMRNLKKSNSL--PRALNEKQAL---TL 137 RS +LS + + ++L +++ + + +R+ + + +L A E + L T+ Sbjct: 309 ARSAAYTLSVLGALFRWLIEQRYLLANPFAGVKVRDTRGATALDTSHAFTEGEWLLVRTI 368 Query: 138 VDNV-----LLHTSHETKWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDD---QS 186 D + + + W A + ++L Y GLR SE + T +I D + Sbjct: 369 ADGLEFGKRTADGAPQPGWTPAAAQRLRFILDFGYATGLRASELVGATLGDIETDAHGDA 428 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP------ 240 L++ GKG K V L P R A+ Y + +LP+ R +P P Sbjct: 429 WLKVIGKGSKAARVALPPLARTALDRYL--------VARRLPVTPA-RWRPDTPLIPRLA 479 Query: 241 -------------GVFQRYIRQLRRYLGLPLSTTAHTLR--------HSFATHLLSNGGD 279 V QR+ Q + AH LR H+ ATH L+ G + Sbjct: 480 EDDAAAITSVRLWKVMQRFFAQTADAVEADHPALAHKLRQASPHWMRHTHATHALARGAE 539 Query: 280 LRSIQSILGHFRLSTTQIY 298 L +++ L H +STT IY Sbjct: 540 LTTVRDNLRHASISTTSIY 558 >gi|237712751|ref|ZP_04543232.1| integrase [Bacteroides sp. D1] gi|262406796|ref|ZP_06083345.1| integrase [Bacteroides sp. 2_1_22] gi|294645845|ref|ZP_06723527.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294807491|ref|ZP_06766290.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|298484331|ref|ZP_07002493.1| integrase [Bacteroides sp. D22] gi|229447202|gb|EEO52993.1| integrase [Bacteroides sp. D1] gi|262355499|gb|EEZ04590.1| integrase [Bacteroides sp. 2_1_22] gi|292638811|gb|EFF57147.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294445307|gb|EFG13975.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|295087263|emb|CBK68786.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] gi|298269521|gb|EFI11120.1| integrase [Bacteroides sp. D22] Length = 396 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 69/163 (42%), Gaps = 46/163 (28%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 A L+ Y GLR S+ SLT NI++ I + SV+ I Sbjct: 238 AFLFCCYA-GLRYSDFTSLTSANIVEFHQETWI-----------IYKSVKTGI------- 278 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST----------------- 260 ++LPL+ GK + + QRY L + L ++ Sbjct: 279 ------EVRLPLYLLFEGKGIE--ILQRYKDDLDSFFKLKDNSNINKELNLLAGLAKIDK 330 Query: 261 --TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + HT RH+ AT LL +G ++ ++Q +LGH + TTQ+Y N+ Sbjct: 331 RVSFHTARHTNATLLLYSGANITTVQKLLGHKSVKTTQVYANI 373 >gi|323485587|ref|ZP_08090931.1| phage integrase family Site-specific recombinase [Clostridium symbiosum WAL-14163] gi|323401105|gb|EGA93459.1| phage integrase family Site-specific recombinase [Clostridium symbiosum WAL-14163] Length = 320 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/190 (23%), Positives = 81/190 (42%), Gaps = 14/190 (7%) Query: 133 QALTLVDNVLLHTSHET-KWIDARNSAILY-----LLYGCGLRISEALSLTPQNIMDDQS 186 Q +DNV+ +E K R+ LY + G R+SE + ++I Sbjct: 137 QHKNYLDNVISEADYEYLKNCLLRDEKYLYYFIIRFMAATGARVSEVIQFEAEDIFTGYK 196 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 I KG+K+R + + +++K + + + +F G P+ PG + Sbjct: 197 D--IYSKGNKLRRIYVPKALQKDAIAWLKAIRQERGF-----VFLNRYGNPITPGGIRGQ 249 Query: 247 IRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 ++ + G+ P H+ RH FA + GD+ + +LGH L TT+IY +S Sbjct: 250 LKNMALAYGMNPEVVHPHSFRHRFAKSFIEKCGDISLLSDLLGHKNLETTRIYLRRSSSE 309 Query: 306 GGDWMMEIYD 315 + + ++ D Sbjct: 310 QYEIINKVVD 319 >gi|322831910|ref|YP_004211937.1| integrase family protein [Rahnella sp. Y9602] gi|321167111|gb|ADW72810.1| integrase family protein [Rahnella sp. Y9602] Length = 328 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 64/149 (42%), Gaps = 20/149 (13%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211 ++ N + L G R E +L ++I+ + T ++ K K R VP+ + +AI Sbjct: 180 LEGDNLKVAQLCLATGGRWGEVSNLKGEHIIKNVITF-MKTKNGKRRSVPVSDELVRAIK 238 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 F N N R + KP LP AH LRH+FAT Sbjct: 239 TKASGRLFVSNYNTVRMTLRKV--KP-----------------DLPKGQAAHVLRHTFAT 279 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 H + NGG++ ++Q +LGH + T Y + Sbjct: 280 HFMMNGGNIITLQRVLGHATIQQTMTYAH 308 >gi|298241379|ref|ZP_06965186.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297554433|gb|EFH88297.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 293 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 63/275 (22%), Positives = 117/275 (42%), Gaps = 31/275 (11%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T+++Y D R FL + E ++ I+ F+ + R R S Sbjct: 24 TIKAYSHDLRHFLAAAPTFLVE---------VTAPLIQEFLQGDGHHSVATRG--RRYST 72 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + +F + ++++ + + + + + + PR L ++ VD + S Sbjct: 73 LCTFYHWAIRQELVSSNPMERLDPITQPQKEPRPLAPEE----VDKIFKAISPSR----L 124 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212 R+ + LLY G+R+ EAL+L ++ D +R+ GKG + R V L + + L Sbjct: 125 RDRTLFMLLYETGVRVGEALALQYSDVTLAQDDEKIRVFGKGQRERTVMLTAAPQSIRLL 184 Query: 213 YYDLCPFDLNLNIQLPLFRG---IRGKPL--NPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 L + +FRG G PL + V Q+ ++ + G+ T H LRH Sbjct: 185 RRHLKESHITSG---SVFRGDPRYGGSPLPLDYTVVQKAWQKYCQAAGV--QATIHQLRH 239 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 S A+ L+ G + +++ +GH L +T Y V+ Sbjct: 240 SRASQLIQAGVPVTTVRKQMGHRNLQSTLRYAEVD 274 >gi|239623219|ref|ZP_04666250.1| site-specific recombinase [Clostridiales bacterium 1_7_47_FAA] gi|239522185|gb|EEQ62051.1| site-specific recombinase [Clostridiales bacterium 1_7_47FAA] Length = 282 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 8/143 (5%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 ++ L G R+SE + + +++ D + + KG K+R + L ++ L++ Sbjct: 131 VVRFLACTGARVSELIQMKAEHL--DMRYMDLYSKGGKVRRIYLPDTLCLEALDWVHQRG 188 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNG 277 D +F G+ + P ++ L R G+P T H RH FA + L+N Sbjct: 189 IDSGF-----IFITSHGQLITPRGISSQLKVLARRYGIPADTVYPHAFRHRFAKNFLANF 243 Query: 278 GDLRSIQSILGHFRLSTTQIYTN 300 D+ + ++GH + TT+IY N Sbjct: 244 NDITLLADLMGHESIETTRIYLN 266 >gi|237740650|ref|ZP_04571131.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 2_1_31] gi|229422667|gb|EEO37714.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 2_1_31] Length = 280 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 66/270 (24%), Positives = 114/270 (42%), Gaps = 32/270 (11%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +N++ LE E T+ S D QFL +L + I +L I+ + +K Sbjct: 7 KNFIYYLEFEENKKHNTVISIRKDLNQFLTYLNEHD-----IIDFNKLDELLIKEYFTKL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 +T+KI + R LS IK F KYL + + + + + + + K + + LT Sbjct: 62 KTEKISASTFNRRLSSIKKFYKYLVDKGLKEKGSEILIESEKNDEK------KIEYLTPE 115 Query: 139 DNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDK 196 + L+ T+ E + + R+ + LLY G+ ++E LSL N ++ + ++ K K Sbjct: 116 EINLVRTTMEGESFNILRDRLMFELLYSSGMTVAELLSLGEVNFNLEKREIYILKNKLSK 175 Query: 197 IR---------IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 + L S ++ E D N NI +F + L +R I Sbjct: 176 TMYFSETCKEFYIKFLNSKKEKFKE-------DYNPNI---IFTNNSNERLTDRSVRRLI 225 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 + L + +TLRHSF ++L NG Sbjct: 226 NKYAEMANLNKEISPYTLRHSFCIYMLKNG 255 >gi|150378362|ref|YP_001314956.1| phage integrase family protein [Sinorhizobium medicae WSM419] gi|150032909|gb|ABR65023.1| phage integrase family protein [Sinorhizobium medicae WSM419] Length = 412 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 71/303 (23%), Positives = 123/303 (40%), Gaps = 29/303 (9%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 LL ++L+ + RGL + + R+FL + + Q I L+ ++ A Sbjct: 115 LLASFSDYLRRV---RGLEPKSREGVLLGGRRFLDWCRHHHPG----QDIEALTAKQVLA 167 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYL--KKRKITTESNILNMRNLKKSNSLPRALNE 131 + R + S + S I++FL++L R + I+ + LP L Sbjct: 168 AVEYRLSLSTTSGSRTAATSHIRTFLRFLYWAGRHHQDLARIVPRTPSWRLAHLPPRLAW 227 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI- 190 +D + T + R+ A+L LL G+R E ++ ++I D T + Sbjct: 228 NDVRHAIDAI-----GATTPVGIRDRAVLLLLATTGIRNGELRAIRLRDI--DWRTGEVF 280 Query: 191 --QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP----GVFQ 244 + KG + R+VPLL A+ +Y + P P+ P Sbjct: 281 VRRTKGKRDRVVPLLEETGAALADYI----LRARPRVDSPYLFLSFTPPVGPFKCAAPVS 336 Query: 245 RYIRQLRRYLGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 R +R+ R+ G+ L AH LRHS AT L+ + + +LGH ++TT +Y V Sbjct: 337 RIVRKRLRHGGVELGRVAGAHLLRHSLATQLVGQRRPINEVADLLGHRSINTTALYVKVA 396 Query: 303 SKN 305 + Sbjct: 397 ASQ 399 >gi|83814313|ref|YP_444939.1| phage integrase family site specific recombinase [Salinibacter ruber DSM 13855] gi|83755707|gb|ABC43820.1| site-specific recombinase, phage integrase family [Salinibacter ruber DSM 13855] Length = 297 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 22/224 (9%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S+ L+ ++ F +YL TE+ ++ ++ + R++ + + ++ V+ Sbjct: 65 SVSTYLTALRRFCQYLTDVGELTENPATGVKGNRRPETHSRSVLTESDIEKLEAVV---- 120 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-----RIQGKGDKIRI-- 199 + ID R+ AI+ L+ GL + + ++ D + TL R+QGKG +++ Sbjct: 121 DDATQIDKRDHAIISLMLYAGL---SEIEIVRADVEDLEHTLMGPVLRVQGKGREVKDQE 177 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLF--RGIR--GKPLNPGVFQRYIRQLRRYLG 255 PL P V +A+ Y D +++ + PLF G R GK L + I + G Sbjct: 178 APLDPPVLEAVEAYLDTRD---DVHPEDPLFVSHGHRSKGKRLQTRSVRSRINGYLKEAG 234 Query: 256 LPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + T H+L H+ A L++G L ++ + H L TT IY Sbjct: 235 IKRKGVTPHSLTHTAALLWLNDGMPLEEVKERMRHGTLDTTMIY 278 >gi|262383463|ref|ZP_06076599.1| integrase [Bacteroides sp. 2_1_33B] gi|262294361|gb|EEY82293.1| integrase [Bacteroides sp. 2_1_33B] Length = 420 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/47 (46%), Positives = 33/47 (70%) Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G+ T H RHS+A+ LL NG D+ +I+S++GH + TTQIYT++ Sbjct: 355 GIKKHITFHVARHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHI 401 >gi|111020166|ref|YP_703138.1| tyrosine recombinase [Rhodococcus jostii RHA1] gi|110819696|gb|ABG94980.1| possible tyrosine recombinase [Rhodococcus jostii RHA1] Length = 290 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 68/168 (40%), Gaps = 19/168 (11%) Query: 155 RNSAILYLLYGCGLRISEALSL----------TPQNIMDDQSTLRIQGKGDK-------- 196 R+SA+L Y GLR +E + PQ+ +R GK K Sbjct: 103 RDSALLKFCYAFGLRRAEVCRIDLVDLRRNPQAPQHRQVGSVAVRY-GKASKGGPAKRRT 161 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 + VP + + I +Y L L+ R ++P RR GL Sbjct: 162 VLTVPEFDWIVEVIEQYLSEVRPALAPGAHPALWVTERAGRISPRSVNLAFAGARRECGL 221 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + H LRHS+ THL+ +R +Q +GH STT IYT V+++ Sbjct: 222 DSALDLHCLRHSYVTHLIEFDYPVRFVQEQVGHAHASTTAIYTGVSNE 269 >gi|146300388|ref|YP_001194979.1| phage integrase family protein [Flavobacterium johnsoniae UW101] gi|146154806|gb|ABQ05660.1| phage integrase family protein [Flavobacterium johnsoniae UW101] Length = 419 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 56/184 (30%), Positives = 85/184 (46%), Gaps = 19/184 (10%) Query: 121 KSNSLPRALNEKQALTLVD-NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 K +P + ++ LT+ + NVL E D A L+ GLR S+ L + Sbjct: 230 KIKGIPEQESRREYLTIKELNVLAEMPCEK---DVLKRAALFSAL-TGLRHSDIQKLRWK 285 Query: 180 NIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 I DD + L K K R V +P +A+ LC + L QL +F + P Sbjct: 286 EISLEDDMAKLHFTQK--KTRGVEYMPISEQAL----QLCG-EPRLPGQL-VFEDL---P 334 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 +P R +++ G+ + T H RH+FAT LS+G D+ ++ +LGH + TTQI Sbjct: 335 -DPSWISRPLKKWVESAGIKKNITFHCFRHTFATLQLSSGTDIYTVSKMLGHTNVKTTQI 393 Query: 298 YTNV 301 Y V Sbjct: 394 YAKV 397 >gi|296127267|ref|YP_003634519.1| integrase family protein [Brachyspira murdochii DSM 12563] gi|296019083|gb|ADG72320.1| integrase family protein [Brachyspira murdochii DSM 12563] Length = 382 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 55/234 (23%), Positives = 109/234 (46%), Gaps = 14/234 (5%) Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL--NMRNLKKSNSLPR- 127 + +IS + ++ + ++ +KS+LK+L K+KI E+ IL ++K+ + + Sbjct: 82 LEKYISYQTEHQLSSDIINCRINVVKSYLKFLHKKKII-EAKILIDTFDDIKRPKPIIKE 140 Query: 128 --ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 + Q L ++ + TS E+ + + RN ++ L+ G+R E + +NI + Sbjct: 141 QLVIKANQTLDIIKKIE-RTSKES-FTNQRNILMMLLMSNTGIRRKETAGIDIRNINLEN 198 Query: 186 STLRI-QGKGDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPG 241 T+ I + KG K RIV ++ +++Y D + Q LF G+ L Sbjct: 199 KTITIYKTKGSKPRIVVFSDMIKDVLIDYIAERDEILRKNKIKEQNNLFIKNNGQDLAIE 258 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 +R + + + + T H+ R FAT + +G + I ++GH ++TT Sbjct: 259 TMTMIMRVISKRNKVKI--TCHSFRRGFATDMAESGTETYLISKMMGHSNINTT 310 >gi|229113526|ref|ZP_04242975.1| Phage integrase [Bacillus cereus Rock1-15] gi|229162106|ref|ZP_04290078.1| Phage integrase [Bacillus cereus R309803] gi|228621357|gb|EEK78211.1| Phage integrase [Bacillus cereus R309803] gi|228669944|gb|EEL25338.1| Phage integrase [Bacillus cereus Rock1-15] Length = 351 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 76/295 (25%), Positives = 126/295 (42%), Gaps = 57/295 (19%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 S+ T Q Y D FL ++ K I TI++LS+ ++ + + ++K +L++ Sbjct: 66 SERTKQQYLHDLSHFLRYI------KEAIGTIQELSHNDVEIYFYEL-SKKYAATTLRKK 118 Query: 92 LSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVD-----NVLLH 144 + ++ FLKY+ ++ S+ L ++KK + R L ++ ++D N ++ Sbjct: 119 KTVVQQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLYPEEVTQILDELKKSNYFVY 178 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIV 200 T+ +LL GLRI E + +++ S LR+ GKG+K R V Sbjct: 179 TA-------------FFLLTTTGLRIEEIATAKWADLVFHSSLNAYLLRVVGKGNKSREV 225 Query: 201 PLLPSVRKAILEYYDL----CPFDL-NLNIQLPLFRG--IRGKPLNPGV----------F 243 + A+ L D N + LP G R L+ V F Sbjct: 226 RIFEDTLDALCHVRSLRKQTTKLDASNTSAFLPKADGSNYRADYLSSLVAKKIEETNLTF 285 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 RY RQ R T HT RH A +L+ G +L+ I+ LGH + TT+ Y Sbjct: 286 LRY-RQDR--------ITPHTCRHFMANYLMEKGIELKKIRDYLGHESIMTTERY 331 >gi|228470638|ref|ZP_04055494.1| integrase [Porphyromonas uenonis 60-3] gi|288801873|ref|ZP_06407315.1| integrase [Prevotella melaninogenica D18] gi|299143044|ref|ZP_07036165.1| integrase [Prevotella oris C735] gi|228307646|gb|EEK16625.1| integrase [Porphyromonas uenonis 60-3] gi|288335915|gb|EFC74348.1| integrase [Prevotella melaninogenica D18] gi|298575495|gb|EFI47380.1| integrase [Prevotella oris C735] Length = 417 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 64/262 (24%), Positives = 110/262 (41%), Gaps = 31/262 (11%) Query: 53 YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112 Y E I +Q ++ + +K + K+ + LS + S LK L KR I Sbjct: 153 YRVEDIPVQKADIAFIKDLEDYFAKEKGFKLNTSA--GYLSMLASLLKDLHKRHIIDTYP 210 Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRI 170 +N +++ PR + ++ L+ E K + L+ C GL Sbjct: 211 FIN-HSIRWEVGTPRYITREEV------GLIAALGEDKLQGYEKVSRDMFLFSCLTGLSY 263 Query: 171 SEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227 ++ LT Q++ + I+ K + +PLLP AI+E Y I Sbjct: 264 TDVYHLTEQHVFHEAGMTWIRKPRIKTGNVCHIPLLPEA-TAIIERYR--------GIHT 314 Query: 228 PLFRGIRGK----PLNPGV--FQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDL 280 FR K P+ PG +++++ R G+ + T H RH+FA+ + LS G + Sbjct: 315 RAFRHEPPKGYLLPI-PGCDTVNIHLKKIARLCGIQKTLTYHMARHTFASQMTLSEGVSI 373 Query: 281 RSIQSILGHFRLSTTQIYTNVN 302 S+ +LGH ++ TTQ+Y + Sbjct: 374 ESVSKMLGHSQIKTTQVYAETS 395 >gi|167772802|ref|ZP_02444855.1| hypothetical protein ANACOL_04184 [Anaerotruncus colihominis DSM 17241] gi|167665280|gb|EDS09410.1| hypothetical protein ANACOL_04184 [Anaerotruncus colihominis DSM 17241] Length = 402 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 2/68 (2%) Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-T 294 KP+ P +++++ R GLP + H LRH+FATH L++G D +++ ILGH S T Sbjct: 298 KPVRPSAAYYWMKRILREAGLP-TIRFHDLRHTFATHALTSGVDAKTLSGILGHTNASFT 356 Query: 295 TQIYTNVN 302 YT+V Sbjct: 357 LDTYTHVT 364 >gi|260438382|ref|ZP_05792198.1| site-specific recombinase, phage integrase family [Butyrivibrio crossotus DSM 2876] gi|292808968|gb|EFF68173.1| site-specific recombinase, phage integrase family [Butyrivibrio crossotus DSM 2876] Length = 349 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 67/289 (23%), Positives = 124/289 (42%), Gaps = 28/289 (9%) Query: 32 SKLTLQSYECDTRQFLIFLA-----FYTEEKITIQTIRQLSYTEIRAFISKRRTQK---- 82 S T+ Y D R + F+A + +T+ + +++ +I+ ++S R+ K Sbjct: 40 STATMLEYAYDVRSYFKFIAAGNPLINSYHDVTLDILDKMTPRDIQEYMSYLRSHKDESG 99 Query: 83 ---IGDRSLK-RSLSGIKSFLKYLKKRK--ITTESNILNMRNLKKSNSLPRALNEKQALT 136 D + + R LS ++SF +Y + + +++ L + PR +E+ Sbjct: 100 RIVTNDANARARKLSSLRSFYQYYFAFAGLHSNPAKLISSPKLHQKKQ-PRLDSEEIKEL 158 Query: 137 LVDNVLLHTSHETKWIDA-----RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ 191 L D + + + K A R++AI+ LL G G+R+SE + + +I + ++++I Sbjct: 159 LTDVITVGALDDNKRPYAIRSNLRDTAIIALLGGTGIRVSELVGIDLNDIDWEHNSIKIV 218 Query: 192 GKGDKIRIVPLLPSVRKAILEYYD--LCPFDLNLNIQLPLFRGIRG--KPLNPGVFQRYI 247 KG IV + K + +Y D P D N LF RG K L +R + Sbjct: 219 RKGGNEDIVYFGEEISKYMADYIDNERKPGDKKEN---ALFVASRGEKKRLTVRSVERIV 275 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + + H LR +F T+ DL ++ LGH + T+ Sbjct: 276 SKYSAASIPSKKISPHGLRRTFGTNYYEATSDLYAVADALGHKNIQVTK 324 >gi|28377767|ref|NP_784659.1| integrase [Lactobacillus plantarum WCFS1] gi|28270600|emb|CAD63504.1| integrase [Lactobacillus plantarum WCFS1] Length = 305 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 70/143 (48%), Gaps = 11/143 (7%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQG----KGDKIRIVPLL--PSVRKAILEYYD 215 L+ G+R +EAL +TP + TL I K +K P SVRK L++ Sbjct: 140 LIAKTGIRFAEALGVTPDDFDFAHQTLSISKTWDYKSNKSDFAPTKNNSSVRKVPLDWQT 199 Query: 216 LCPFDLNLNIQLPLFRGI--RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 + F L +LP + I + K N V Y+ +L ++ +P+ + H LRH+ A+ L Sbjct: 200 VIQFS-QLTKKLPEDQPIFVQAKVYNDTV-NHYLERLCKHASIPV-ISVHGLRHTHASLL 256 Query: 274 LSNGGDLRSIQSILGHFRLSTTQ 296 L G + S+ LGH ++TTQ Sbjct: 257 LYAGVSIASVARRLGHSNMTTTQ 279 >gi|294506796|ref|YP_003570854.1| Tyrosine recombinase xerD [Salinibacter ruber M8] gi|294343124|emb|CBH23902.1| Tyrosine recombinase xerD [Salinibacter ruber M8] Length = 315 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 22/224 (9%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S+ L+ ++ F +YL TE+ ++ ++ + R++ + + ++ V+ Sbjct: 83 SVSTYLTALRRFCQYLTDVGELTENPATGVKGNRRPETHSRSVLTESDIEKLEAVV---- 138 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-----RIQGKGDKIRI-- 199 + ID R+ AI+ L+ GL + + ++ D + TL R+QGKG +++ Sbjct: 139 DDATQIDKRDHAIISLMLYAGL---SEIEIVRADVEDLEHTLMGPVLRVQGKGREVKDQE 195 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLF--RGIR--GKPLNPGVFQRYIRQLRRYLG 255 PL P V +A+ Y D +++ + PLF G R GK L + I + G Sbjct: 196 APLDPPVLEAVEAYLDTRD---DVHPEDPLFVSHGHRSKGKRLQTRSVRSRINGYLKEAG 252 Query: 256 LPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + T H+L H+ A L++G L ++ + H L TT IY Sbjct: 253 IKRKGVTPHSLTHTAALLWLNDGMPLEEVKERMRHGTLDTTMIY 296 >gi|238764997|ref|ZP_04625934.1| Integrase [Yersinia kristensenii ATCC 33638] gi|238696766|gb|EEP89546.1| Integrase [Yersinia kristensenii ATCC 33638] Length = 334 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 27/152 (17%) Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 + ++ L G R SEA SLT +M + T + KG + R +P Sbjct: 195 ATVVRLCLATGARWSEAESLTHTQVMPYKVTY-TKTKGKRNRSIP--------------- 238 Query: 217 CPFDLNLNIQLPLFRGIRGKP--LNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHL 273 I LF + K L P + + L+R + LP +H LRH+FA+H Sbjct: 239 --------ISEELFNSLPKKTGRLFPSCYSAFRTALKRTNIKLPDRQCSHVLRHTFASHF 290 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + GG++ +Q ILGH + T Y + + ++ Sbjct: 291 MMKGGNILVLQRILGHTDIKMTMRYAHFSPEH 322 >gi|116052949|ref|YP_793266.1| bacteriophage integrase [Pseudomonas aeruginosa UCBPP-PA14] gi|115588170|gb|ABJ14185.1| possible bacteriophage integrase [Pseudomonas aeruginosa UCBPP-PA14] Length = 126 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 22/98 (22%) Query: 234 RGKPLNPGVFQRYIRQLRRY------------------LGLPLSTTAHTLRHSFATHLLS 275 R P+ P + QR LRRY + LP +H LRH+FA+H + Sbjct: 12 RSVPIPPELEQRLHSHLRRYGKFSNCRDSFDFAVKMSGVALPRGQKSHVLRHTFASHFMM 71 Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 NGG++ + Q ILGH L+ T Y ++ D++ E+ Sbjct: 72 NGGNILTRQKILGHSSLTLTMRYAHL----APDFLQEV 105 >gi|256027362|ref|ZP_05441196.1| integrase/recombinase [Fusobacterium sp. D11] gi|289765331|ref|ZP_06524709.1| integrase/recombinase [Fusobacterium sp. D11] gi|289716886|gb|EFD80898.1| integrase/recombinase [Fusobacterium sp. D11] Length = 328 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 11/158 (6%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL---RIQGKGDKIRIVPLLPSVRKAIL 211 RN ILY L+ G+R E L+L ++ + ++ I+ K K P+ S+ K + Sbjct: 155 RNITILYTLFYTGMRSKELLTLQFKHYLKRENEYFFKLIETKSGKDVYKPIHKSLVKKLE 214 Query: 212 EY----YDLCPFDLNLNIQLPLFRG--IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 EY ++ DL + +F + PL+ I+ + + +G +S H + Sbjct: 215 EYKEYLMNMYSLDLKDLDKKYIFSTSVLNNSPLSYRSLNAIIQDMGKLIGKDIS--PHNI 272 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 RH+ AT L +G D+ I+ LGH T++Y N S Sbjct: 273 RHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARS 310 >gi|12084943|ref|NP_073236.1| Rsd [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|17233417|ref|NP_490521.1| resolvase [Salmonella typhimurium LT2] gi|60115476|ref|YP_209268.1| resolvase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|71559012|ref|YP_271739.1| resolvase [Salmonella enterica] gi|161867892|ref|YP_001598073.1| Rsd [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|167995062|ref|ZP_02576152.1| Rsd [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|169647098|ref|YP_001716122.1| resolvase [Salmonella enterica subsp. enterica serovar Dublin] gi|198241686|ref|YP_002213875.1| Rsd [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|224504248|ref|YP_002635587.1| resolvase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261888697|ref|YP_003264384.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|305696866|ref|YP_003864181.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|12060313|dbj|BAB20519.1| Rsd [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|16445238|gb|AAL23456.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|45359300|gb|AAS58887.1| resolvase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|68166311|gb|AAY88072.1| resolvase [Salmonella enterica] gi|161087271|gb|ABX56741.1| Rsd [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|169246231|gb|ACA51205.1| resolvase [Salmonella enterica subsp. enterica serovar Dublin] gi|197936202|gb|ACH73536.1| Rsd [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205327175|gb|EDZ13939.1| Rsd [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|224470957|gb|ACN48786.1| resolvase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261857283|emb|CBA11347.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|267990067|gb|ACY86464.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|304376168|dbj|BAJ15330.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312915724|dbj|BAJ39697.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|322712981|gb|EFZ04553.1| resolvase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323133031|gb|ADX20460.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326621616|gb|EGE27962.1| Rsd [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|327536763|gb|AEA95594.1| resolvase [Salmonella enterica subsp. enterica serovar Dublin] gi|332991453|gb|AEF10435.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 260 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 94/223 (42%), Gaps = 48/223 (21%) Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL------------LYGCGLR 169 S LP A++ AL L + H + + SA+L+ L+ G R Sbjct: 15 SALLPVAIDYPAALALRQMAMQHDDYPKYLLAPEVSALLHYVPDLHRRMLLATLWNTGAR 74 Query: 170 ISEALSLT-------PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222 I+EAL+LT P +TL+ Q R +PS + + L P N Sbjct: 75 INEALALTRGDFSLAPPYPFVQLATLK-QRAEKAARTAGRMPSGSQP----HRLVPLSDN 129 Query: 223 ----------LNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG------------LPL 258 +++PL R R G+ +++ R +R ++G + Sbjct: 130 QYVSELQMMVATLKIPLERRNRRTGRTEKARLWEITDRTVRTWIGEAVEAAAADDVTFSV 189 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T HT RHS+A H+L G L+ +Q+++GH +S+T++YT V Sbjct: 190 PVTPHTFRHSYAMHMLYAGIPLKVLQALMGHKSVSSTEVYTKV 232 >gi|302388220|ref|YP_003824042.1| integrase family protein [Clostridium saccharolyticum WM1] gi|302198848|gb|ADL06419.1| integrase family protein [Clostridium saccharolyticum WM1] Length = 368 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 71/305 (23%), Positives = 134/305 (43%), Gaps = 45/305 (14%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++WL++ + + T +SY +++I F+ ++K ++L+ + F+ Sbjct: 68 ESWLEDASLR--VKPSTYESYYRCMDKYVI--PFFKQDKS-----QKLTEESVLCFVKAM 118 Query: 79 RTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTES-NILNMRNLKKSNSLPRALNEKQALT 136 R Q + D S K++L+ K LK + K T E +I+ + K + + + Sbjct: 119 REQPGLADSSRKKNLTIFKIALKEILKG--TPEGFSIIEQVKIPKPDDKEVMVFSLKEQR 176 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI------ 190 L++ LH+ D R + I+ Y G+R+ E SL +I + TL I Sbjct: 177 LIEQTALHSK------DKRAAGIILCFY-TGIRLGELCSLKWGDIDMEAGTLSIGRTVSR 229 Query: 191 -----QGKGDKIRIVPLLPSVRKAI---------LEYYDLCPFDLNLNIQLPLFRGIRGK 236 +GK K ++ P RK++ L+ + C F +G Sbjct: 230 IKDFEEGKS-KTALLVGAPKSRKSLRKIPLPEFLLKLFKECGFSHANPDHYIFSQG--DS 286 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT- 295 P++P FQ+ ++L + + H +RH+FAT L G D+++I +LGH +S T Sbjct: 287 PIDPRCFQKLYKKLLKEAHVQ-DRKFHAIRHTFATRALEMGVDVKTISELLGHSSVSITL 345 Query: 296 QIYTN 300 +Y++ Sbjct: 346 NVYSH 350 >gi|187924023|ref|YP_001895665.1| integrase family protein [Burkholderia phytofirmans PsJN] gi|187715217|gb|ACD16441.1| integrase family protein [Burkholderia phytofirmans PsJN] Length = 422 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 74/173 (42%), Gaps = 30/173 (17%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIM-------DDQSTLRIQGKGDKIRIVPLLPSV 206 AR+ + L Y G+RISE + DQ L GKG+K RIVP P + Sbjct: 224 ARSRWLTTLFYLQGMRISEVAGGKMGDFSRRLGADGKDQWWLETLGKGNKERIVPASPEL 283 Query: 207 RKAILEYY---DLCPFDLNLNIQLPL---FRGIRGKPLNPGVFQRYIRQL-------RRY 253 + + Y L P + + PL FRG R + L+ I+ + R Sbjct: 284 IQEMRLYRIENGLAPLPTR-SEETPLVIPFRG-RNRCLSRSAIHDAIKSIFGNAASWLRS 341 Query: 254 LGLPLS--------TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 G S +AH LRH+ +H G DLR+I+ LGH L+TT +Y Sbjct: 342 KGAEFSDRADELERASAHWLRHTAGSHQADGGVDLRTIRDNLGHVSLNTTSLY 394 >gi|317130968|ref|YP_004097250.1| integrase family protein [Bacillus cellulosilyticus DSM 2522] gi|315475916|gb|ADU32519.1| integrase family protein [Bacillus cellulosilyticus DSM 2522] Length = 291 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 78/308 (25%), Positives = 147/308 (47%), Gaps = 32/308 (10%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 LK N+L++++ S+ T+ SY QF +L +EK I + ++ EI+A+ Sbjct: 4 LKGFNNYLEDMD----KSERTIVSYLNTISQFSNWL---IKEKF-IDDLSIVATREIKAY 55 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 + +K ++ + L+ IK+F K++ + I E ++ L+K +++ + Q Sbjct: 56 -RQILLEKYSPATVNQKLACIKTFYKFMTQTHIIKEDPAKYIK-LQKVDNI-----KSQY 108 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQ-G 192 +T + + + + + K I A AIL +L CGLR SE SLT + +D + TL ++ Sbjct: 109 MTRAEELRVMSKAKEKGIKA--YAILMVLLKCGLRPSELSSLTLDCLFLDKEPTLLVKDS 166 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL------PLFRGIRGKPLNPGVFQRY 246 K +K R VP+ KA+ + D + N + ++ +F R L QR Sbjct: 167 KRNKSRYVPIPMDTCKALNAWID----ERNKSDKIYHTRSKYVFTSQRQDRLEVRAIQRV 222 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNSKN 305 + + G+ L LR ++A L+ N L ++ +++GH + TT YT +N ++ Sbjct: 223 VEVIGIEAGVELYCI--RLRATYANSLIQNANIPLSALATLMGHDSIQTTSRYTTINEQD 280 Query: 306 GGDWMMEI 313 ++ I Sbjct: 281 KRRYVNSI 288 >gi|317481431|ref|ZP_07940498.1| phage integrase [Bacteroides sp. 4_1_36] gi|316902416|gb|EFV24303.1| phage integrase [Bacteroides sp. 4_1_36] Length = 385 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 37/62 (59%) Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 P +Y+R+++ G+ T H+ RHS AT ++ G +L S+ ILGH +++TQ+Y Sbjct: 308 PDNVAKYVRRIKDKAGIEKDFTYHSSRHSAATLAITAGAELYSVSKILGHGSIASTQVYA 367 Query: 300 NV 301 V Sbjct: 368 KV 369 >gi|288871476|ref|ZP_06410189.1| putative tyrosine recombinase XerC [Clostridium hathewayi DSM 13479] gi|288863319|gb|EFC95617.1| putative tyrosine recombinase XerC [Clostridium hathewayi DSM 13479] Length = 358 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 56/231 (24%), Positives = 101/231 (43%), Gaps = 31/231 (13%) Query: 85 DRSLKRSLSGIKSFLKYL--KKRKITTESNILNMRNLKKSNSLPRALNEKQALTL-VDNV 141 +R + R +S +KSF Y +R + + ++ LP+ L+EK+ + L VD V Sbjct: 117 ERGIMRKISSLKSFFNYYYRNERLVNNPAALV---------QLPK-LHEKEIIRLDVDEV 166 Query: 142 LL---------------HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 L + HE + R+ A+L L+ G G+R+SE + L ++ Sbjct: 167 ALLLDEVEKGEALTEKQKSYHEKTKL--RDLALLTLMLGTGIRVSECVGLDIDDVDFKNG 224 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQR 245 +RI KG K V V A+ +Y + + + LF ++ K L + Sbjct: 225 GIRIHRKGGKEVTVYFGSEVEDALNDYLEERKMIIAEEGHESALFLSLQRKRLAVRSVEN 284 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 +++ R + T H LR ++ T+L D+ + +LGH ++TT+ Sbjct: 285 LVKKYARIVTPLKKITPHKLRSTYGTNLYKETNDIYLVADVLGHADVNTTK 335 >gi|268319286|ref|YP_003292942.1| bacteriophage integrase [Lactobacillus johnsonii FI9785] gi|262397661|emb|CAX66675.1| bacteriophage integrase [Lactobacillus johnsonii FI9785] Length = 390 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 82/181 (45%), Gaps = 39/181 (21%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-----GKGDKI-----------RIVPLLPS 205 LL GLR SEAL+LT Q+I + +TL + G G K RI+P+ S Sbjct: 205 LLSSTGLRKSEALALTWQDIDLNNNTLSVNKTLAYGLGGKTIIQSPKSPKSKRILPISDS 264 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRG------KP------LNPGVFQRYIRQLRRY 253 +++ +++Y + LF I+G KP + Q ++ +Y Sbjct: 265 LKEVLIDYKQKQKI-----LSSKLFHTIKGTYLRMSKPDQWLNSIYAKDHQDKVKYAEKY 319 Query: 254 LGLPLST----TAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTT-QIYTNVNSKNGG 307 PL T H RH+FAT L++ +++Q +LGH + T IYT++N KN Sbjct: 320 NLNPLPDLKRITVHGFRHTFATLLIAETNVKPKTVQMLLGHENIQMTLDIYTHINKKNTE 379 Query: 308 D 308 D Sbjct: 380 D 380 >gi|86157887|ref|YP_464672.1| Phage integrase [Anaeromyxobacter dehalogenans 2CP-C] gi|85774398|gb|ABC81235.1| Phage integrase [Anaeromyxobacter dehalogenans 2CP-C] Length = 387 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 20/154 (12%) Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQ----------GKGDKIRIVPLLPSVRKAILEYYD 215 GLR E + L +I TL ++ KG+ R+VPL +R A+L + Sbjct: 207 AGLRRGETIGLEWPDIDFQAGTLTVRRAVYRGVVGTTKGNAERVVPLTERLRDALLAHRH 266 Query: 216 LCPFDL-----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 L + + +I+ + R R L G + +++ R+ GL H LRH+F Sbjct: 267 LAGRRVLTGATDESIRSVMERLSRHAGLPAGTRMKRGKEVPRWAGL-----YHKLRHTFC 321 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 T L G R+IQ++ GH + TT Y +V+++ Sbjct: 322 TRLAMAGVPPRTIQALAGHVSIETTMRYMHVSAR 355 >gi|262042240|ref|ZP_06015407.1| resolvase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040411|gb|EEW41515.1| resolvase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 259 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 58/227 (25%), Positives = 97/227 (42%), Gaps = 48/227 (21%) Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL------------LYG 165 ++ +LP A++ AL L ++H + SA+L+ L+ Sbjct: 10 SISPGTALPVAIDYPAALALRQMAIVHDELPRYLLAPEVSALLHYVPDLHRKMLLATLWN 69 Query: 166 CGLRISEALSLT-------PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 G RI+EAL+LT P +TL+ Q R P+ +A + L P Sbjct: 70 TGARINEALALTRGDFSLAPPYPFVQLATLK-QRAEKAARTAGRAPAGNQA----HRLVP 124 Query: 219 FD----------LNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYL----------GL 256 + +++PL R + G+ ++Q R +R +L G+ Sbjct: 125 LSDHQYLSQLQMMVATLKIPLERRNKHTGRTEKARIWQITDRTVRTWLAEAVEAAAADGV 184 Query: 257 PLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 S T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 185 TFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|194449832|ref|YP_002047249.1| phage integrase family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194408136|gb|ACF68355.1| phage integrase family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] Length = 345 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 58/142 (40%), Gaps = 21/142 (14%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 I+ + G R EA L I + T I+ KG + R +PL Sbjct: 201 IVKICLSTGARWGEAEKLKRSQITAGKITF-IKTKGKRNRTIPL---------------- 243 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278 D + +LP G +P + R + LP H LRH+FA+H + NGG Sbjct: 244 -DTEIIAELP---KKNGALFSPCYYAFRSALARAGIDLPAGQLTHVLRHTFASHFMMNGG 299 Query: 279 DLRSIQSILGHFRLSTTQIYTN 300 ++ +Q ILGH + T Y + Sbjct: 300 NILVLQKILGHTDIKMTMRYAH 321 >gi|168210502|ref|ZP_02636127.1| putative integrase/recombinase [Clostridium perfringens B str. ATCC 3626] gi|170711397|gb|EDT23579.1| putative integrase/recombinase [Clostridium perfringens B str. ATCC 3626] Length = 280 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 67/284 (23%), Positives = 124/284 (43%), Gaps = 30/284 (10%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 N E +RGL+ T + YE + + FL F+ T+++++ L EI+ + K + Sbjct: 7 NEFIRYEFDRGLTLETTKRYEREIKCFLKFIKIKTDKELS-----DLLEDEIKMCLKKYK 61 Query: 80 T----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 +K ++ + I FL++ + I + + ++K + L+E + L Sbjct: 62 MNLEKEKYKPSTINGKIIIINKFLRFCE---IEVKEKCVK---IQKKPYITNVLSESEYL 115 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 L+ NV + R+ I+ +L GLR+SE LSL + I + ++I+GKG Sbjct: 116 RLL-NV---------CDNFRDKVIIRVLANTGLRVSELLSLEIREIYN--GDIQIKGKGA 163 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 K R + K I +Y + + + +F G +G + + + ++ Sbjct: 164 KYRECFCSSEIIKLIKQYIETERLGTD---KSKVFTGRKGALKRQAINKMLFKYAKKAHI 220 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 H+LRH F +L L I++ +GH + TT IYT Sbjct: 221 KKEKAHPHSLRHLFGKNLAERRVSLDVIKTFMGHEDIRTTAIYT 264 >gi|282601462|ref|ZP_05981764.2| putative phage integrase [Subdoligranulum variabile DSM 15176] gi|282568976|gb|EFB74511.1| putative phage integrase [Subdoligranulum variabile DSM 15176] Length = 385 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 33/56 (58%) Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289 +GKP++P F R++R L G P HT+RH FAT+LL +G + +LGH Sbjct: 288 KGKPIHPDSFSRHLRHLYDQNGFPEEYHLHTMRHFFATYLLEHGTSKQVAADLLGH 343 >gi|326943493|gb|AEA19386.1| Phage integrase [Bacillus thuringiensis serovar chinensis CT-43] Length = 347 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 76/295 (25%), Positives = 126/295 (42%), Gaps = 57/295 (19%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 S+ T Q Y D FL ++ K +I TI++LS+ E+ + + ++K +L++ Sbjct: 62 SERTKQQYLHDLSHFLRYI------KESIGTIQELSHNEMEIYFYEL-SKKYAATTLRKK 114 Query: 92 LSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVD-----NVLLH 144 + ++ FLKY+ ++ S+ L ++KK + R L ++ ++D N ++ Sbjct: 115 KTIVQQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLYPEEVNQILDELKKSNYFVY 174 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIV 200 T+ +LL GLRI E + +++ S LR+ GKG+K R V Sbjct: 175 TA-------------FFLLTTTGLRIEEIATAKWADLVFHSSLNAYLLRVVGKGNKSREV 221 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQ-----LPLFRG--IRGKPLNPGV----------F 243 + A+ L L+ LP G R L+ V F Sbjct: 222 RIFEDTLDALCHVRSLRKQTTELDTSSTSAFLPKADGSNYRADYLSSLVAKKIEEINLDF 281 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 RY RQ R T HT RH A +L+ G +L+ I+ LGH + TT+ Y Sbjct: 282 LRY-RQDR--------ITPHTCRHFMANYLMEKGIELKKIRDYLGHESIMTTERY 327 >gi|294783592|ref|ZP_06748916.1| phage integrase family site-specific recombinase [Fusobacterium sp. 1_1_41FAA] gi|294480470|gb|EFG28247.1| phage integrase family site-specific recombinase [Fusobacterium sp. 1_1_41FAA] Length = 371 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 81/175 (46%), Gaps = 24/175 (13%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 ++Y + GLR+ E L+L ++ L ++ + ++ + + V K E+ DL Sbjct: 201 CLIYFTFFTGLRLGEVLALKWTDVKG--KILSVERQYNRTVTIKDI-GVSKLTYEFKDLK 257 Query: 218 PFDLNLNIQLP-----LFRGI----------RGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 + I LP + GI GKP+ QR I L + L L + Sbjct: 258 TKNSKREIPLPDKALVILEGIPKTYELIFSDEGKPIERKRPQRRITALCKKLNLE-HRSF 316 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQ 316 H++RHS+AT L ++++QS++GH + TT IYT+V D MEI D+ Sbjct: 317 HSIRHSYATRLFELDVPIKTVQSLMGHSDMDTTMNIYTHVMQ----DKKMEIIDK 367 >gi|238750823|ref|ZP_04612321.1| Int [Yersinia rohdei ATCC 43380] gi|238710967|gb|EEQ03187.1| Int [Yersinia rohdei ATCC 43380] Length = 71 Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 20/47 (42%), Positives = 30/47 (63%) Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 LP H LRH+FA+H + NGG++ ++Q ILGH + T Y N++ Sbjct: 6 LPRGQATHVLRHTFASHFMMNGGNIIALQQILGHANIQQTMAYANLS 52 >gi|52079925|ref|YP_078716.1| lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme, catalytic core [Bacillus licheniformis ATCC 14580] gi|52785296|ref|YP_091125.1| hypothetical protein BLi01531 [Bacillus licheniformis ATCC 14580] gi|52003136|gb|AAU23078.1| Hypothetical Lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme, catalytic core [Bacillus licheniformis ATCC 14580] gi|52347798|gb|AAU40432.1| putative protein [Bacillus licheniformis ATCC 14580] Length = 352 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 62/292 (21%), Positives = 125/292 (42%), Gaps = 18/292 (6%) Query: 24 NLEIERGLSKLTLQSYE--CDT-RQFLIFLAFYTE-EKITIQTIRQ-LSYT--EIRAFIS 76 N+++ GL+K T+ Y C++ +F T E I ++ RQ ++Y E + F Sbjct: 33 NVKMSEGLTKETIDRYRRVCESVEEFAEIKGLSTSVESIDVEFARQYMTYILHEKKTFKG 92 Query: 77 KR------RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 R +T + L +++ + K + +E+ + +K+ + + L+ Sbjct: 93 HRYKPESVKTPGCSPKYANDHLKTMRAVFTFCIKENMISENPFQKINKVKQPEPVIQILS 152 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 ++ LL T ++ K+ + R+ ++ L RI E ++L +NI + S + + Sbjct: 153 VEEM-----KQLLKTPNKRKFSEFRDYVVMMCLINSMCRIGEIVTLEIENINFELSYIIL 207 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 + + K R ++P + + L + +F G L F++ + Sbjct: 208 EAQKTKTRKGRMIPLDKNTMQLLKKLLLRNTRFKPSKYVFITEEGTRLTTDNFRKRLADY 267 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 G+ H RH+ A+ L GGDLR +Q+I+GH L YT+++ Sbjct: 268 AHQAGINKRVHPHLFRHTAASMFLQAGGDLRHLQTIIGHKDLRMVLRYTHLS 319 >gi|229824886|ref|ZP_04450955.1| hypothetical protein GCWU000182_00235 [Abiotrophia defectiva ATCC 49176] gi|229790889|gb|EEP27003.1| hypothetical protein GCWU000182_00235 [Abiotrophia defectiva ATCC 49176] Length = 349 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/237 (22%), Positives = 104/237 (43%), Gaps = 15/237 (6%) Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL-KKRKITTESNILNMRNLKKSNSLPRAL 129 IR +I ++ +KR L +++F KY KK +I + ++L ++ R L Sbjct: 94 IRYYIKDGEGHGNKEKGIKRKLVALRTFYKYYYKKERIKSNPSVLVDTPKLHDKAIVR-L 152 Query: 130 NEKQALTLVDNVLLH---TSHETKW---IDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 ++ L+DN+ +S + K+ R+ AI+ LL G+R+SE + + +I Sbjct: 153 EPEEVANLLDNIESGDGLSSSQAKYHEKTSVRDLAIVTLLLSTGIRVSECVGIDLNDIDF 212 Query: 184 DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKPLN 239 + +++ KG +V A+ Y + D + N F I+ K ++ Sbjct: 213 KTNGIKVHRKGGYETVVYFGDEAETALKNYLKERQTIEAADGHKN---AFFLSIQKKRIS 269 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + +++ + T H LR ++ T L GD+ + +LGH ++TT+ Sbjct: 270 VRAVEILVKKYSSLVTTIKKITPHKLRSTYGTSLYRETGDIYLVADVLGHKDVNTTK 326 >gi|150005337|ref|YP_001300081.1| integrase protein [Bacteroides vulgatus ATCC 8482] gi|149933761|gb|ABR40459.1| integrase protein [Bacteroides vulgatus ATCC 8482] Length = 407 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 69/157 (43%), Gaps = 35/157 (22%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------GDKIRIVPL---LP 204 A L+ Y GLR S+ LTP+N +R+ GK G +IR+ PL Sbjct: 237 AFLFCCY-TGLRYSDFCQLTPENF------IRVNGKRWLYFKSVKTGVEIRL-PLHLLFE 288 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 S IL+ Y P + P N V + +R+L G+ T H Sbjct: 289 SRALGILDRY-------------PDIGSLVSLPCNSEV-NKQLRKLTGLCGIKKRITYHV 334 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 RH+ AT L+ G + ++Q +LGH + TTQIY+ V Sbjct: 335 SRHTCATLLVHQGVAITTVQKLLGHTSVKTTQIYSEV 371 >gi|90421232|ref|ZP_01229131.1| integrase/recombinase [Aurantimonas manganoxydans SI85-9A1] gi|90334507|gb|EAS48293.1| integrase/recombinase [Aurantimonas manganoxydans SI85-9A1] Length = 318 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 68/269 (25%), Positives = 115/269 (42%), Gaps = 27/269 (10%) Query: 44 RQFLIFLAFYTEEKIT-IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102 R FLA+ +T I +R L + AFI + T+K + K+ LS I+ +L Sbjct: 46 RAIGAFLAWCEAYGVTSITAVRSL---HVAAFIEEL-TRKRSAPTAKQQLSAIRMLFDWL 101 Query: 103 KKRKITTESNILNMRNLKKSNSLPRA----LNEKQALTLVDNVLLHTSHETKWIDARNSA 158 ++ + ++R S+S+ R L+ +A L+D + + T R+ A Sbjct: 102 VVGQVVPVNPAASVRG--PSHSVRRGKTPVLDPTEARQLLDAIDVTTP-----AGLRDRA 154 Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTL--RIQGKGDKIRIVPLLPSVRKAILEYYDL 216 ++ L+ +R+ AL + +++ L R+ KG K +P ++ + Y D Sbjct: 155 LIGLMIYSFVRVGAALGMKVEDVYVQNRRLWVRLNEKGGKRHEMPCHHNLEGYLHSYLDG 214 Query: 217 CPFDLNLNIQLPLFRGI-RG------KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 C + + + PLFR I RG KPL I++ G+ HT R + Sbjct: 215 C--GIAEDCRGPLFRTIGRGTRELTTKPLAQANAYAMIQRRTAAAGIGTKIGNHTFRATG 272 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 T L NGG L ++ H TTQ+Y Sbjct: 273 ITAYLKNGGTLERAAAMANHASTRTTQLY 301 >gi|50955666|ref|YP_062954.1| phage-related integrase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50952148|gb|AAT89849.1| phage-related integrase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 312 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/119 (36%), Positives = 56/119 (47%), Gaps = 18/119 (15%) Query: 188 LRIQG-KGDKIRIVPLL----PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242 L +QG KG K+R VPL+ P ++A + P L LF GI G L G Sbjct: 172 LILQGTKGRKLRHVPLIDALQPYAKEAAVAK---APDAL-------LFDGILGGRLTGGT 221 Query: 243 FQRYI--RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 F+R + +R LG P LRH+FAT +L G + +LGH L T IYT Sbjct: 222 FKRAVGWEMIRSVLGRP-DFKVKDLRHTFATMMLDAGVSANDTKDVLGHSSLQVTDIYT 279 >gi|332882853|ref|ZP_08450462.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679173|gb|EGJ52161.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 409 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 69/150 (46%), Gaps = 20/150 (13%) Query: 162 LLYGC--GLRISEALSLTPQNI-MDDQSTL---RIQGKGDKIRIVPLLPSVRKAILEYYD 215 L+ C G+ ++A+S+T NI MDD L ++ K + + V LLP I +Y+ Sbjct: 253 FLFACYTGVPYADAVSITRDNIYMDDDGALWLKYLRKKNEYLAHVKLLPEAIGLIEKYHS 312 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274 +L I P R R+++ LR G+ H RH+F + + L Sbjct: 313 DERKELFPMIHHPNMR-------------RHMKGLRDLAGIKSDLVYHMGRHTFGSLITL 359 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 G + +I +LGH L+TTQ+Y V K Sbjct: 360 EAGVPIETISKMLGHTNLATTQLYARVTPK 389 >gi|293368859|ref|ZP_06615463.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292636164|gb|EFF54652.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 397 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 9/139 (6%) Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225 CGLR+S+ L ++ +RI+ K K + PL + L++ + + Sbjct: 254 CGLRVSDIRKLKWSDLQKSGERIRIEIKMQKTK-EPLYLPISDEALKWLPQRGEAKDDDF 312 Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285 PL + G +++ + G+ + H RH+ AT +L+ G DL ++ Sbjct: 313 IFPL--------THEGTINNILQKWAKAAGVTKHISFHVARHTHATMMLTLGADLYTVSK 364 Query: 286 ILGHFRLSTTQIYTNVNSK 304 +LGH ++TTQIY + K Sbjct: 365 LLGHKNIATTQIYAKIVDK 383 >gi|296126327|ref|YP_003633579.1| integrase family protein [Brachyspira murdochii DSM 12563] gi|296018143|gb|ADG71380.1| integrase family protein [Brachyspira murdochii DSM 12563] Length = 382 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 55/234 (23%), Positives = 109/234 (46%), Gaps = 14/234 (5%) Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNIL--NMRNLKKSNSLPR- 127 + +IS + ++ + ++ +KS+LK+L K+KI E+ IL ++K+ + + Sbjct: 82 LEKYISYQTEHQLSSDIINCRINVVKSYLKFLHKKKII-EAKILIDTFDDIKRPKPIIKE 140 Query: 128 --ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 + Q L ++ + TS E+ + + RN ++ L+ G+R E + +NI + Sbjct: 141 QLVVKANQTLDIIKKIE-RTSKES-FTNQRNILMMLLMSNTGIRRKETAGIDIRNINLEN 198 Query: 186 STLRI-QGKGDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPG 241 T+ I + KG K RIV ++ +++Y D + Q LF G+ L Sbjct: 199 KTITIYKTKGSKPRIVVFSDMIKDVLIDYIAERDEILRKNKIKEQNNLFIKNNGQDLAIE 258 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 +R + + + + T H+ R FAT + +G + I ++GH ++TT Sbjct: 259 TMTMIMRVISKRNKVKI--TCHSFRRGFATDMAESGTETYLISKMMGHSNINTT 310 >gi|27377249|ref|NP_768778.1| site-specific integrase/recombinase [Bradyrhizobium japonicum USDA 110] gi|27350392|dbj|BAC47403.1| bll2138 [Bradyrhizobium japonicum USDA 110] Length = 414 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 102/231 (44%), Gaps = 18/231 (7%) Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTES--NILNMRNLKKSNSLPRALNEKQALTL 137 T+++ +K ++ +L++L R + + + + +SLPR + TL Sbjct: 179 TKRVSLAYVKTMTMALRGYLRFLSARGLCRAGLDQAVPIIPQWRLSSLPRYIRSSDVETL 238 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 + T +T R+ AIL LL GLR + LSL ++ Q+TL ++GKG + Sbjct: 239 I-----ATCDQTTATGVRDRAILLLLARLGLRAGDILSLRLTDVDWQQATLSVRGKGRRE 293 Query: 198 RIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNP----GVFQRYIRQLRR 252 +PL A+L Y D P ++ I + P+ P +R R Sbjct: 294 TRLPLPQDAGDALLAYLDQARPHVADVRIFF-----MSNAPIRPLTGSSAVSDVVRSAIR 348 Query: 253 YLGLPL-STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 G+P+ S A+ LRHS AT +L G L ++ ++L H T Y V+ Sbjct: 349 KAGIPVPSNGANLLRHSAATAMLRGGATLDTVGAVLRHRSPDMTAHYAKVD 399 >gi|332885141|gb|EGK05392.1| hypothetical protein HMPREF9456_02593 [Dysgonomonas mossii DSM 22836] Length = 480 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 22/148 (14%) Query: 162 LLYGC--GLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRI---VPLLPSVRKAILEY 213 ++ C GL + +L NI DD L I GK +K + VPLL ++ I +Y Sbjct: 249 FIFSCFSGLAYIDVKNLRQSNIRTSFDD--GLWIMGKREKTGVNYNVPLLDIPKQIIEKY 306 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 P D L + + + +N Y++++ G+ + + H RH+FAT Sbjct: 307 SGKLPDDKALPV-------MSNQKMN-----EYLKEIGTICGIDKNLSYHLARHTFATLT 354 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 L+ G + S+ +LGH + TTQIY + Sbjct: 355 LTKGVSIESVSKMLGHTNIKTTQIYARI 382 >gi|318605374|emb|CBY26872.1| putative bacteriophage integrase [Yersinia enterocolitica subsp. palearctica Y11] Length = 341 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 23/143 (16%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 I+ + G R SEA L +M ++ T I K K R VP+ + K I Sbjct: 202 IVRICLATGARWSEAEQLRQAQVMPNKITY-INTKSKKNRTVPISAELHKLI-------- 252 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNG 277 P +G L + + + + R L LP H LRH+FA+H + NG Sbjct: 253 ---------PKMKG----RLFANAYDAFGQAIDRAKLVLPTGQLTHVLRHTFASHFMMNG 299 Query: 278 GDLRSIQSILGHFRLSTTQIYTN 300 G++ +Q ILGH + T Y++ Sbjct: 300 GNILVLQQILGHSTIQMTMRYSH 322 >gi|294776003|ref|ZP_06741499.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] gi|294450141|gb|EFG18645.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] Length = 429 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 22/153 (14%) Query: 162 LLYGC--GLRISEALSLTPQNIMDD----------QSTLRIQGKGDKIRIVPLLPSVRKA 209 ++ C GL S+ +L+ +N++ D + L + K I +PLLP V A Sbjct: 268 FVFACFTGLAFSDVATLSGENLVQDNLGDWWIRKGRIKLEHRRKASSISNIPLLP-VPLA 326 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 ILE Y P + LP+ + Y++++ + G+ + T H RH+F Sbjct: 327 ILEKYREHPVCIKKGCCLPVMCNQK--------MNSYLKEIADFCGIKKNLTTHVARHTF 378 Query: 270 ATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T + L+N L+ + +LGH TQ Y V Sbjct: 379 GTTVTLANNVPLQDVSVMLGHASTRMTQHYARV 411 >gi|237743641|ref|ZP_04574122.1| predicted protein [Fusobacterium sp. 7_1] gi|229432672|gb|EEO42884.1| predicted protein [Fusobacterium sp. 7_1] Length = 414 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 78/179 (43%), Gaps = 34/179 (18%) Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-----GKGDKIRIV-------------P 201 YLL GLR SE L +T NI ++ +L ++ +KI +V P Sbjct: 221 FYLLIFLGLRKSELLGITIDNINFEEKSLYLEQSLIWDSENKIYVVNREMKSPLANRKFP 280 Query: 202 LLPSVRKAILEYYDLCPFD-------------LNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 L+P + + E + D LN N + L GK L + Sbjct: 281 LIPILTDFLAERINRIKEDKTFFGNTYGIDKKLNFNAEGYLCIDREGKILRKFKLNYELD 340 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV-NSKN 305 ++ + +GL + H LRH+ AT + S G DL+ IQ LGH +STT IY + NSKN Sbjct: 341 KILKKIGLE-HLSVHELRHTCATLMYSEGVDLKKIQYWLGHSNISTTANIYAHYDNSKN 398 >gi|254245075|ref|ZP_04938397.1| hypothetical protein PA2G_05961 [Pseudomonas aeruginosa 2192] gi|126198453|gb|EAZ62516.1| hypothetical protein PA2G_05961 [Pseudomonas aeruginosa 2192] Length = 178 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 62/147 (42%), Gaps = 29/147 (19%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 + L G + SEA L Q + + T K K+R VP+ + + ++ Sbjct: 38 VTLLCLATGAQWSEAEKLPAQRLQGNVVTY-AGTKSGKVRHVPIPAELADRVRAHW---- 92 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-----GLPLSTTAHTLRHSFATHL 273 P++ G F I RR L LP +H LRH+FA+H Sbjct: 93 ------------------PMH-GPFTSCITSFRRALERTTIQLPQGQASHALRHTFASHF 133 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTN 300 + NGG++ ++Q ILGH L+ T Y + Sbjct: 134 MMNGGNILTLQKILGHSTLTMTMRYAH 160 >gi|51596109|ref|YP_070300.1| integrase [Yersinia pseudotuberculosis IP 32953] gi|51589391|emb|CAH21013.1| putative integrase [Yersinia pseudotuberculosis IP 32953] Length = 351 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 23/143 (16%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 I+ + G R SEA L +M ++ T I K K R VP+ + K I Sbjct: 202 IVRICLATGARWSEAEQLRQAQVMPNKITY-INTKSKKNRTVPISAELHKLI-------- 252 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNG 277 P +G L + + + + R L LP H LRH+FA+H + NG Sbjct: 253 ---------PKMKG----RLFANAYDAFGQAIDRAKLVLPTGQLTHVLRHTFASHFMMNG 299 Query: 278 GDLRSIQSILGHFRLSTTQIYTN 300 G++ +Q ILGH + T Y++ Sbjct: 300 GNILVLQQILGHSTIQMTMRYSH 322 >gi|301311317|ref|ZP_07217244.1| transposase [Bacteroides sp. 20_3] gi|300830403|gb|EFK61046.1| transposase [Bacteroides sp. 20_3] Length = 411 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 22/153 (14%) Query: 162 LLYGC--GLRISEALSLTPQNIMDD----------QSTLRIQGKGDKIRIVPLLPSVRKA 209 ++ C GL S+ +L+ +N++ D + L + K I +PLLP V A Sbjct: 250 FVFACFTGLAFSDVATLSGENLVQDNLGDWWIRKGRIKLEHRRKASSISNIPLLP-VPLA 308 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 ILE Y P + LP+ + Y++++ + G+ + T H RH+F Sbjct: 309 ILEKYREHPVCIKKGCCLPVMCNQK--------MNSYLKEIADFCGIKKNLTTHVARHTF 360 Query: 270 ATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T + L+N L+ + +LGH TQ Y V Sbjct: 361 GTTVTLANNVPLQDVSVMLGHASTRMTQHYARV 393 >gi|289645149|ref|ZP_06477170.1| integrase family protein [Frankia symbiont of Datisca glomerata] gi|289505044|gb|EFD26122.1| integrase family protein [Frankia symbiont of Datisca glomerata] Length = 366 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 68/161 (42%), Gaps = 27/161 (16%) Query: 155 RNSAILYLLYGCGLRISEALSL-------TPQNIMDDQSTLRIQGK-----------GDK 196 R A++ L GLR E + L T + ++ + + GK G + Sbjct: 181 RYRALVLLAAYTGLRWGECVGLRWTRVDLTAAELTVVETAVEVSGKISVKPYPKTEAGRR 240 Query: 197 -IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR-QLRRYL 254 + I PLL + + E P DL +F G PL F+RY+ R Sbjct: 241 TVPIPPLLVAYLRRHREIVPPAPDDL-------VFPDTVGHPLRRSNFRRYVWVPARGKA 293 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 GLP S T H LRH +AT L+S G + +Q LGH STT Sbjct: 294 GLPTSLTFHALRHCYATWLISEGVPVNVVQVALGHEHASTT 334 >gi|257894525|ref|ZP_05674178.1| site-specific recombinase [Enterococcus faecium 1,231,408] gi|314949949|ref|ZP_07853247.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0082] gi|257830904|gb|EEV57511.1| site-specific recombinase [Enterococcus faecium 1,231,408] gi|313643717|gb|EFS08297.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0082] Length = 392 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 77/327 (23%), Positives = 141/327 (43%), Gaps = 57/327 (17%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 Q W E R L++ + +Y+ Q I + +EK++ LS E++ F+ Sbjct: 66 QKWF---EYYRSLNEQKIATYDKREEQVEILNRWIGDEKLS-----SLSSEELQKFLFIL 117 Query: 79 RTQKI-------GDRSLKRSLSGIKSFLKYLKKRKITTESNI---------LNMRNLKKS 122 + + I SL+ + + KY K+ +T E+ + L +++LK+S Sbjct: 118 KEKGINGVDVGYAKNSLQSLVQVLNMIFKYCMKKNLTNENPMKFVKMPKYQLTVKDLKES 177 Query: 123 -NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 NSL E + LT VD + ++ + + S + ++L+ G R+SEAL+L PQ+I Sbjct: 178 VNSL-----EDKFLT-VDELRTFLNYGIIYEELPMSVLFHVLFYTGCRVSEALALQPQDI 231 Query: 182 MDDQSTL------RIQGKGDKIRI-----------VPLLPSVRKAILEYYD-LCPFDLNL 223 +++ + ++GK RI VP+ P V + + E D L N Sbjct: 232 DFERNEILFYKQTAVKGKSKDFRIETTKTVSSARRVPVTPLVMEKLQELIDVLNKTKRNS 291 Query: 224 NIQLP-------LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 N + L G RG P ++++ G+ H RH+ A+ L++ Sbjct: 292 NFVVDETYLFVYLDPGKRGVPYRREYVNDHVKRCVERCGINKDFHTHLARHTMAS-LVAE 350 Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNS 303 ++ LGH +T++IY ++ S Sbjct: 351 YCSWDVLKDRLGHTDSTTSKIYRHLTS 377 >gi|240047536|ref|YP_002960924.1| Tyrosine recombinase xerC [Mycoplasma conjunctivae HRC/581] gi|239985108|emb|CAT05101.1| Tyrosine recombinase xerC [Mycoplasma conjunctivae] Length = 326 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 55/254 (21%), Positives = 116/254 (45%), Gaps = 31/254 (12%) Query: 61 QTIRQLSYTEIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116 + I ++ ++R ++S K + K+ +++R LS SF +L+ +S + + Sbjct: 85 KQINEIETNDLRNYLSNYQYKNNSSKVTIDNIRRILS---SFFSWLEDENYIVKSPVRRI 141 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 + +K ++ ++++ + DNV + R+ A++ +L G+R+ E + L Sbjct: 142 KKVKAPITVKETYSDEELEIMRDNVN----------NYRDLALIDILASTGMRVGELVKL 191 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN----LNIQLPLFR- 231 +++ ++ + GKG+K RIV + + +Y D D N ++++LP R Sbjct: 192 NIEDVDFNERECIVVGKGNKQRIVYFDARTKIHLKKYLD-SRVDKNKSLFVSLKLPYGRI 250 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291 I G + +R++ + L + H R + AT + G + +Q +LGH + Sbjct: 251 SING-------IESRLRKIGKDLNIK-KVHPHKFRRTLATIAIDKGMPIEQVQRLLGHEK 302 Query: 292 LSTTQIYTNVNSKN 305 + TT Y V N Sbjct: 303 VDTTLKYAMVKQSN 316 >gi|330998383|ref|ZP_08322207.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] gi|329568489|gb|EGG50294.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] Length = 391 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/47 (46%), Positives = 31/47 (65%) Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G+ S T HT RH+FAT LL+ G DL ++ +LGH ++ TQIY + Sbjct: 328 GIAKSVTYHTARHTFATMLLTLGADLYTVSKLLGHSQIKNTQIYAEI 374 >gi|319641880|ref|ZP_07996555.1| integrase [Bacteroides sp. 3_1_40A] gi|317386499|gb|EFV67403.1| integrase [Bacteroides sp. 3_1_40A] Length = 412 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 64/262 (24%), Positives = 115/262 (43%), Gaps = 31/262 (11%) Query: 53 YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112 Y E I IQ E+ + +K + K+ + LS + S LK L KR + E+ Sbjct: 148 YHMEDIPIQKADITFVKELEEYFAKEKEFKLNTSA--GYLSMLASLLKDLYKRHVI-ETY 204 Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRI 170 +++ PR + +++ +V L ++ + +R+ L+ C GL Sbjct: 205 PFIAHSIRWDVGTPRYITKEEVGRIV--ALSEKDLQSYELVSRD----MFLFSCYTGLSY 258 Query: 171 SEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227 ++ T ++++++ I+ K I +PLLP AI+E Y I Sbjct: 259 TDIYHFTTEHLVEEDGMTWIRKPRVKTGNICYIPLLPEA-SAIIERYR--------GIHT 309 Query: 228 PLFRGIRGK----PLNPGV--FQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDL 280 FR K P+ PG +++++ R G+ T H RH+FA+ + LS G + Sbjct: 310 RAFRHEPPKGYLLPI-PGCDTVNIHLKKIARLCGITKKLTFHMARHTFASQMTLSEGVSI 368 Query: 281 RSIQSILGHFRLSTTQIYTNVN 302 S+ +LGH ++ TTQ+Y + Sbjct: 369 ESVSKMLGHSQIKTTQVYAETS 390 >gi|268319484|ref|YP_003293140.1| site-specific tyrosine recombinase XerS [Lactobacillus johnsonii FI9785] gi|262397859|emb|CAX66873.1| site-specific tyrosine recombinase XerS [Lactobacillus johnsonii FI9785] Length = 356 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 79/349 (22%), Positives = 147/349 (42%), Gaps = 54/349 (15%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYT 54 ME N E++ EL ++++ + S T Y + R+F +L + + Sbjct: 1 METNKYLELIKQEL-ANMPDFVKEYNLGTSHSLTTTYQYLTEIRRFFDWLRQNNIASISS 59 Query: 55 EEKITIQTIRQLSYTEIRAFISK-RRTQKIGDR-----SLKRSLSGIKSFLKYLKKRKIT 108 ++I + T+ L ++ +I + T+ R ++ RS++ ++S K+L IT Sbjct: 60 NKEIEVTTLENLQRNDVMLYIHHLKHTKNQQGRLNSPTTINRSINALRSLYKFLT---IT 116 Query: 109 TESN----ILNMRNLKKSNSL--PRALNEK---------------QALTLVDNVLLHTSH 147 +++N + + K NSL + LN + Q L ++N +H + Sbjct: 117 SDNNHGEPYFDRNVMLKINSLNDTKTLNYRAHVLESHMYMGDLKYQFLDFIENEYVHKCN 176 Query: 148 ET-----KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG---DKIRI 199 + K R+ AI+ L+ G G+R+SE + + +NI + L + KG D + I Sbjct: 177 KQSLPAFKKNHERDMAIIALILGTGIRVSECVGVNMRNINLKDAMLDVTRKGGQKDSVPI 236 Query: 200 ----VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 +P L R+ + Y D L + G + K + ++ + + G Sbjct: 237 AAWTIPYLKKYREIRADRYHAEKEDTAF--FLTRWHG-KTKRITTNAVEKMVNKYSAAFG 293 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 PL T H LRH+ A+ L D + LG + T +YT+V+ K Sbjct: 294 KPL--TPHKLRHTLASELYEVTKDQVLVAQQLGQKGTTATDLYTHVDQK 340 >gi|239905519|ref|YP_002952258.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239795383|dbj|BAH74372.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 362 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 15/142 (10%) Query: 162 LLYGCGLRI--SEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCP 218 + + G+R SE L+LT +I D S++++ K R++P+ P E+ D Sbjct: 193 VAWNLGVRTGESELLALTWNDIDWDDSSIKVYATKTKTTRVIPIAP-------EFLDRLQ 245 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278 + Q +GKPL F+R ++ GL + +RH FAT LL GG Sbjct: 246 L-MREKAQTGYIIEYQGKPLRK--FRRSLKTAAEKAGLTYPVVMYDIRHLFATTLLREGG 302 Query: 279 DLRSIQSILGH--FRLSTTQIY 298 D+ ++ ++GH +++ Q Y Sbjct: 303 DVAAVSKLMGHASVKMTVDQYY 324 >gi|208703309|ref|YP_002267578.1| integrase/recombinase [Bacillus cereus H3081.97] gi|208658164|gb|ACI30531.1| integrase/recombinase [Bacillus cereus H3081.97] Length = 319 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/217 (24%), Positives = 97/217 (44%), Gaps = 8/217 (3%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTES---NILNMRNLKKSNSLPRALNEK-QALTLVDNVL 142 +++ ++ +K F YL + + + N N+R +K+S +EK + L V++ Sbjct: 83 TIRLRVNCVKDFFSYLYEENVIESNPAKNFKNVRYVKESQVRWLTHDEKNRLLRYVEDPK 142 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202 L +E W RN AI+ ++ GLR SE +L ++ +D+ L KG K R +P+ Sbjct: 143 LIIKNE--WRGYRNLAIINIMLLAGLRASEVSNLKLED-LDNGFILIRSSKGLKGRKLPI 199 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 + K + ++ ++ + +F RG + L + G+ + Sbjct: 200 NHDLGKVLNKWLNVRNEKEQFSDSQYVFLSQRGSKFTEMGLTKLFITLEKKTGIE-GLSP 258 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 HTLRH+F L+ G + I GH + TT IY Sbjct: 259 HTLRHTFCHDLVEKGTPIHIIADYAGHSSVKTTMIYV 295 >gi|303236540|ref|ZP_07323125.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302483288|gb|EFL46298.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 418 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 NP R +R G+ + H RH+FAT L+NG D+ ++ +LGH + TTQ+Y Sbjct: 335 NPSWISRPLRAWIEKAGIQKHLSFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVY 394 Query: 299 TNV 301 V Sbjct: 395 AKV 397 >gi|281426208|ref|ZP_06257121.1| mobilizable transposon, int protein [Prevotella oris F0302] gi|281399784|gb|EFB30615.1| mobilizable transposon, int protein [Prevotella oris F0302] Length = 418 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 NP R +R G+ + H RH+FAT L+NG D+ ++ +LGH + TTQ+Y Sbjct: 335 NPSWISRPLRAWIEKAGIQKHLSFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVY 394 Query: 299 TNV 301 V Sbjct: 395 AKV 397 >gi|160936910|ref|ZP_02084274.1| hypothetical protein CLOBOL_01799 [Clostridium bolteae ATCC BAA-613] gi|158440100|gb|EDP17847.1| hypothetical protein CLOBOL_01799 [Clostridium bolteae ATCC BAA-613] Length = 290 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/154 (32%), Positives = 73/154 (47%), Gaps = 9/154 (5%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212 + R S +L + G+RISE LS N +D Q + KG KIR V L + + + Sbjct: 123 NERLSLLLQTVCSTGIRISE-LSFITVNAVDKQ-VAEVDCKG-KIRTVFLTNGLCRLLKA 179 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFAT 271 Y N+ I +F GKP++ R ++Q+ G+ P H LRH FA Sbjct: 180 Y----ARKRNI-ISGMIFVTRSGKPMDRSNIWREMKQISHKAGVNPDKVFPHNLRHLFAR 234 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 S DL + ILGH ++TT+IYT + +N Sbjct: 235 VYYSQEKDLVRLADILGHSSVNTTRIYTMESGEN 268 >gi|116669557|ref|YP_830490.1| phage integrase family protein [Arthrobacter sp. FB24] gi|116609666|gb|ABK02390.1| phage integrase family protein [Arthrobacter sp. FB24] Length = 400 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 67/150 (44%), Gaps = 13/150 (8%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV----RKAI 210 R+ A++ G R SE L +T + + + KG +++ +P P R Sbjct: 215 RDRALVAFYVSSGARASELLGITGDRVNVGDQLIGVYRKGGQLQWLPAAPDAFVWLRLYQ 274 Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSF 269 LE P + P++ +RG+P P ++ LRR L S T H LRH+F Sbjct: 275 LEGGVAGPDE-------PVWLTLRGEP-RPLSYEAMCAVLRRCNDLLGSNWTLHDLRHTF 326 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 A L G L +Q +LGH L+TT +Y Sbjct: 327 AIRALEGGMGLHEVQQLLGHQSLTTTTVYA 356 >gi|253700090|ref|YP_003021279.1| integrase family protein [Geobacter sp. M21] gi|251774940|gb|ACT17521.1| integrase family protein [Geobacter sp. M21] Length = 334 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 55/226 (24%), Positives = 103/226 (45%), Gaps = 38/226 (16%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 ++ R L+ +K+ L+Y ++ +++ K+S R ++ ++ +V N+L T Sbjct: 124 TVNRYLATVKTLLRYHRQ-------PWEHIQLKKESKGRIRVISREEEAMVV-NLLRDTD 175 Query: 147 HETKWIDARNSA-ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLP 204 H ++ + A ++ +L G R+SE L+L ++I D + + + KGDK R +P+ Sbjct: 176 HGSRRLYFPEVADLVEVLADTGCRLSEVLNLGYEDINFDTNLITVWINKGDKPRSIPMTN 235 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ--------RYIRQLRRYLGL 256 V IL+ + G PL P +++R+ G Sbjct: 236 RV-GGILQARQV------------------GNPLKPFTIDIDKVETAWKWVRKKMGLAGD 276 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 P H LRH+ AT L+ G DL +++ LGH + T+ Y ++N Sbjct: 277 P-EFVPHALRHTTATRLIDGGIDLYTVKEWLGHSTIQVTERYAHLN 321 >gi|159898571|ref|YP_001544818.1| site-specific recombinase XerD-like protein [Herpetosiphon aurantiacus ATCC 23779] gi|159891610|gb|ABX04690.1| Site-specific recombinase XerD-like [Herpetosiphon aurantiacus ATCC 23779] Length = 81 Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 37/60 (61%), Gaps = 7/60 (11%) Query: 250 LRRYLGLPLST-------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 L R GL ++T T HTLRHS+ATHLL G +LR IQ LGH TT +YT+V+ Sbjct: 6 LCRAFGLSVATCGIQQHATVHTLRHSWATHLLEAGVNLRIIQLWLGHRSPVTTALYTHVS 65 >gi|325270622|ref|ZP_08137220.1| phage integrase family integrase/recombinase [Prevotella multiformis DSM 16608] gi|324987017|gb|EGC19002.1| phage integrase family integrase/recombinase [Prevotella multiformis DSM 16608] Length = 330 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 60/255 (23%), Positives = 105/255 (41%), Gaps = 51/255 (20%) Query: 70 EIRAFISKRRTQKIGDR----SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 +IR ++S + +++ R +L+R S SF +L+ +S + + ++ + + Sbjct: 98 DIRNYLSDYQEERLSSRVTIDNLRRIFS---SFFAWLEDEDYIGKSPVRRIHKVRTESLV 154 Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 L+++ L D T HE R+ A++ LL G+R+ E + ++I + Sbjct: 155 KEVLSDENMEVLRD-----TCHEI-----RDLAMIDLLASTGMRVGELAKMNREDIDFQE 204 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF-- 243 + GKG+K R E Y F+ I L + R K NP +F Sbjct: 205 RQCVVFGKGNKER-------------EVY----FNARTKIHLKRYLESR-KDNNPALFVS 246 Query: 244 -------------QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290 + +RQL R G+ H R + AT + G + +Q +LGH Sbjct: 247 LSSPHNRLTISGVEVRLRQLGRKAGIS-KVHPHKFRRTLATMAIDKGMPIEQVQKLLGHV 305 Query: 291 RLSTTQIYTNVNSKN 305 ++ TT Y VN N Sbjct: 306 KIDTTLHYAMVNQTN 320 >gi|284038161|ref|YP_003388091.1| integrase family protein [Spirosoma linguale DSM 74] gi|283817454|gb|ADB39292.1| integrase family protein [Spirosoma linguale DSM 74] Length = 372 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 11/143 (7%) Query: 167 GLRISEALSLTPQNIMDDQST-LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225 GLR S+ +LT + I D S+ I K R V +LP A+ L Sbjct: 231 GLRYSDIEALTWEQIRHDASSGYFIHFTQQKTRGVEVLPISELAV------ALLGTRLGD 284 Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285 P+ G+ + + + ++Q + G+ T H+ RH++AT LS G D+ ++ Sbjct: 285 SQPVLPGL----IYSAHWNKILKQWVKDAGITKPITFHSFRHTYATLQLSLGTDIYTVSK 340 Query: 286 ILGHFRLSTTQIYTNVNSKNGGD 308 +LGH L TTQIY + ++ D Sbjct: 341 MLGHRELKTTQIYAKIVDQSKRD 363 >gi|150005370|ref|YP_001300114.1| putative phage integrase/recombinase [Bacteroides vulgatus ATCC 8482] gi|149933794|gb|ABR40492.1| putative phage integrase/recombinase [Bacteroides vulgatus ATCC 8482] Length = 368 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 55/248 (22%), Positives = 107/248 (43%), Gaps = 23/248 (9%) Query: 52 FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES 111 +YT K + + +++ + FI + + ++++ ++ ++ F K+LKK E Sbjct: 125 YYTSLKQYFEYVNEINMENCKRFIRTLEEKSLSPQTIRLRITALEKFSKWLKK---PIEL 181 Query: 112 NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171 M+ N++P E++ L+D L T + + +L G R+S Sbjct: 182 KRPKMKRKLDVNNVP---TEEEYNRLLD--FLKTKSNKDYY-----FFIKVLGTTGARLS 231 Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231 E T ++I+ + TLR GKG+K R +++ Y + + +F Sbjct: 232 EFQQFTWEDIISGEVTLR--GKGNKYRRFFFQKQLQQEAKAY-------AKEHGKTGIFA 282 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290 R P+ F ++++ ++ G+ AH RH FA L D+ + +LGH Sbjct: 283 VGRFGPITQRGFSQHLKAWGKHCGIDSRKMHAHAFRHFFAKMFLKKNKDVIQLADLLGHG 342 Query: 291 RLSTTQIY 298 + TT+IY Sbjct: 343 SVDTTRIY 350 >gi|145300732|ref|YP_001143573.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449] gi|142853504|gb|ABO91825.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449] Length = 353 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 2/58 (3%) Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 F++ IR R + LP+ + H LRH+FA+H + NGG++ +Q ILGH + T Y++ Sbjct: 265 FEKAIR--RANIKLPVGQSTHVLRHTFASHFMMNGGNILVLQRILGHTDIKMTMRYSH 320 >gi|138895610|ref|YP_001126063.1| putative integrase/recombinase [Geobacillus thermodenitrificans NG80-2] gi|196249622|ref|ZP_03148319.1| integrase family protein [Geobacillus sp. G11MC16] gi|134267123|gb|ABO67318.1| Putative integrase/recombinase [Geobacillus thermodenitrificans NG80-2] gi|196210916|gb|EDY05678.1| integrase family protein [Geobacillus sp. G11MC16] Length = 197 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 14/162 (8%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ AI+YL GLR+ E +L +I + LRI GKG K+R VP+ + + E Sbjct: 34 RDRAIVYLFVYAGLRVEELSNLKLTDIDLEMRRLRIVGKGMKVRTVPISNIL---LAELQ 90 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPL------NPGVFQRYIRQLRRYLGLP-LSTTAHTLRH 267 D F + + P + P +P R I+++ P T H RH Sbjct: 91 DWLAFRAEMAKKKP---HVEASPYVFYSQRSPKFSVRGIQRMVESYSPPGKKLTPHMFRH 147 Query: 268 SFATHLL-SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 +F +L + D+ ++ + GH ++TT Y + + D Sbjct: 148 TFCKWMLKATNNDIEKVRRLAGHSHIATTSRYVKDSYSDLAD 189 >gi|126665716|ref|ZP_01736697.1| hypothetical protein MELB17_04087 [Marinobacter sp. ELB17] gi|126629650|gb|EBA00267.1| hypothetical protein MELB17_04087 [Marinobacter sp. ELB17] Length = 361 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 69/150 (46%), Gaps = 15/150 (10%) Query: 159 ILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 I+ L G R SE LT +++ QS K + R PL+ A+ E+ + Sbjct: 202 IVLLGITTGARRSELSGLTWRDVDFKRQSVTFHDTKNGETRAAPLVGPALHAMTEWAKVR 261 Query: 218 PFDLNLNIQLPLFRG----IRGKPLNPGVFQR-YIRQLRRYLGLPLSTTAHTLRHSFATH 272 P LN +F G + KPL+ FQR ++ L+R H LRH+ A++ Sbjct: 262 P----LNDSSHVFSGRTEKTKNKPLD---FQRAWMTALKRAEVKDFRF--HDLRHTAASY 312 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 L NG LR I ILGH L+ Q Y+++ Sbjct: 313 LAMNGAGLREIAEILGHKTLAMVQRYSHLT 342 >gi|56475686|ref|YP_157275.1| phage-related integrase [Aromatoleum aromaticum EbN1] gi|56311729|emb|CAI06374.1| phage-related integrase [Aromatoleum aromaticum EbN1] Length = 294 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 55/225 (24%), Positives = 101/225 (44%), Gaps = 16/225 (7%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITI 60 M P+ SF L + Q + + L +R +S T+ Y FL F A + T Sbjct: 1 MRNTATPKPPSFAALVQ-QFFTEYLVAQRAVSPRTVACYRDALMLFLDFAAQKLGKTPTA 59 Query: 61 QTIRQLSYTEIRAFI---SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117 + L I AF+ R I R+L+ L+ +++FLK+ +R ++ ++ Sbjct: 60 LQLADLQPDMILAFLDHLEHERHNAIRTRNLR--LTAMRAFLKFAGRR------DVASLY 111 Query: 118 NLKKSNSLPRALNEKQA---LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174 ++++ ++P E+ LT + V + W R+ + LLY G R+SE + Sbjct: 112 VVERALAVPMKRFERPMVGFLTREEMVAVLGQPGATWSSQRDHLLFALLYNTGARVSEII 171 Query: 175 SLTPQN-IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 + + ++D + + ++GKG K R VPL + + I + L P Sbjct: 172 GVRVIDVVLDSAACVHLRGKGRKQRSVPLWKTTVQEIRAWLRLNP 216 >gi|332706105|ref|ZP_08426177.1| site-specific recombinase XerD [Lyngbya majuscula 3L] gi|332355197|gb|EGJ34665.1| site-specific recombinase XerD [Lyngbya majuscula 3L] Length = 341 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 14/128 (10%) Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRY 246 +R++GK + IRIVPL P + ++ Y + + + PLF + + + +R Sbjct: 203 IRVEGKRN-IRIVPLTPDLADLLMAYLEARAENGEVVKPSSPLFIAVGNRAGGKRISRRG 261 Query: 247 IR----------QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 IR L++ G +S AH+LRH+ T L +G +LR +Q +LGH TT Sbjct: 262 IRLVVDSYLEQTNLKQTPGRTIS--AHSLRHTAGTLALRSGAELRQVQDLLGHADPRTTC 319 Query: 297 IYTNVNSK 304 IY +V + Sbjct: 320 IYAHVADR 327 >gi|114762272|ref|ZP_01441730.1| putative integrase [Pelagibaca bermudensis HTCC2601] gi|114767357|ref|ZP_01446164.1| putative integrase [Pelagibaca bermudensis HTCC2601] gi|114767555|ref|ZP_01446308.1| putative integrase [Pelagibaca bermudensis HTCC2601] gi|114540384|gb|EAU43471.1| putative integrase [Roseovarius sp. HTCC2601] gi|114540561|gb|EAU43636.1| putative integrase [Roseovarius sp. HTCC2601] gi|114544890|gb|EAU47894.1| putative integrase [Roseovarius sp. HTCC2601] Length = 409 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 76/319 (23%), Positives = 134/319 (42%), Gaps = 52/319 (16%) Query: 8 EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLS 67 +++ + + + W+++ ERGL+ T+ + + R+FL + ++ + +R L+ Sbjct: 107 KMLRHAICHDYETWMRD---ERGLADETIDARLREARRFLDW--YFG--RSGADGLRSLA 159 Query: 68 YTEIRAFISKRRTQKIGDR--SLKRSLSGIKSFLKYL--KKRKITTESNILNMRNLKKSN 123 +I ++ R +G R SL S + ++S L+YL R T S + L Sbjct: 160 VRDIDRYMDMR---AVGLRRISLAASAAWLRSLLRYLHLSGRVPTDLSPQVIGPMLYAYE 216 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 +P L+ Q +D VL T+ + R+ AIL +L GLR E SL ++I Sbjct: 217 DVPSILDRSQ----IDMVLKATARDRSPRGLRDHAILLMLAIYGLREGEICSLRLEDIDW 272 Query: 184 DQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY---------------DLCPFDLNLNIQL 227 +LRI+ K + +PLL V A+L+Y L P+ N Sbjct: 273 HADSLRIRHTKTNACSYMPLLTPVGDAVLDYLRLGRPQVESREVFIRSLAPYTRMKN--- 329 Query: 228 PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-HTLRHSFATHLLSNGGDLRSIQSI 286 L+ + G+ GV +P+ H RH+ A LL + I + Sbjct: 330 -LYGMVDGRLAAAGV-------------VPVGKRGPHVFRHARAVELLRASVPQKIIGDV 375 Query: 287 LGHFRLSTTQIYTNVNSKN 305 LGH +T Y + +++ Sbjct: 376 LGHRSTESTNAYLKLATED 394 >gi|191166265|ref|ZP_03028098.1| resolvase [Escherichia coli B7A] gi|190903692|gb|EDV63408.1| resolvase [Escherichia coli B7A] Length = 259 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/191 (24%), Positives = 80/191 (41%), Gaps = 58/191 (30%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL- 211 D R +L L+ G RI+EAL+LT +GD + P P V+ A L Sbjct: 57 DLRRKMLLATLWNTGARINEALALT---------------RGD-FSLAPPYPFVQLATLK 100 Query: 212 -----------------EYYDLCPFD----------LNLNIQLPLFRGIR--GKPLNPGV 242 + + L P + +++P+ R + G+ + Sbjct: 101 QRTEKAARTAGRMPVGQQTHRLVPLSDAWYVSQLQTMVATLKIPMERRNKRTGRTEKARI 160 Query: 243 FQRYIRQLRRYLG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290 ++ R +R ++G + T HT RHS+A H+L G L+ +QS++GH Sbjct: 161 WEVTDRTVRTWIGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHK 220 Query: 291 RLSTTQIYTNV 301 +S+T++YT V Sbjct: 221 SISSTEVYTKV 231 >gi|268592413|ref|ZP_06126634.1| type 1 fimbriae regulatory protein FimB [Providencia rettgeri DSM 1131] gi|291312200|gb|EFE52653.1| type 1 fimbriae regulatory protein FimB [Providencia rettgeri DSM 1131] Length = 185 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 6/173 (3%) Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIR 198 N LL + + ++ + R+ +L + + GLR+SE +T +I Q + I+ KG Sbjct: 13 NSLLDATKQGRYPN-RDYCLLLMSFLHGLRVSELTHITMSDIDLVQKVIFIRRLKGGLST 71 Query: 199 IVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 + P++P AI ++ L D LF +G ++ R Q + GLP Sbjct: 72 VQPIIPEEFNAIEKW--LVERDSWKTAGSDCLFISQKGSQISRYQIYRLFEQYGKIAGLP 129 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN-GGDW 309 + H LRH+ L G D R IQ LGH ++ T IYT N K G W Sbjct: 130 VKLHPHMLRHACGYALADLGRDTRLIQDYLGHRNIAHTVIYTASNEKRFSGIW 182 >gi|50121562|ref|YP_050729.1| phage integrase [Pectobacterium atrosepticum SCRI1043] gi|49612088|emb|CAG75538.1| phage integrase [Pectobacterium atrosepticum SCRI1043] Length = 328 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 24/151 (15%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211 +D N + + G R E +L ++I+++ T ++ K K R +P+ P++ I Sbjct: 180 LDGDNRKAVLVCLATGGRWGEVANLKCEHIINNMLTF-MKTKNGKRRTIPISPALMTQI- 237 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 + F + P + +R + + P LP H RH+F Sbjct: 238 -KHAKTGF-----VCHPNYDAVRNTLRAMKPD--------------LPDGQALHVFRHTF 277 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 ATH + NGG++ ++Q ILGH + T +Y + Sbjct: 278 ATHFMMNGGNIITLQRILGHSTIQQTMVYAH 308 >gi|320527410|ref|ZP_08028592.1| site-specific recombinase, phage integrase family [Solobacterium moorei F0204] gi|320132267|gb|EFW24815.1| site-specific recombinase, phage integrase family [Solobacterium moorei F0204] Length = 307 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 1/60 (1%) Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 KP+ P ++ Y ++L + L +P H+LRHSFAT + + D +++ +LGH +STT Sbjct: 226 KPIEPRTYRNYYKKLCKQLDIP-ELKFHSLRHSFATRCIESKADYKTVSVLLGHSNISTT 284 >gi|302345845|ref|YP_003814198.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] gi|302149964|gb|ADK96226.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] Length = 418 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 NP R +R G+ + H RH+FAT L+NG D+ ++ +LGH + TTQ+Y Sbjct: 335 NPSWISRPLRAWIEKAGIQKHLSFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVY 394 Query: 299 TNV 301 V Sbjct: 395 AKV 397 >gi|190015183|ref|YP_001966733.1| putative integrase/recombinase [Bacillus cereus] gi|190015448|ref|YP_001967057.1| putative integrase/recombinase [Bacillus cereus] gi|218848491|ref|YP_002455116.1| phage integrase family protein [Bacillus cereus AH820] gi|116584859|gb|ABK00974.1| putative integrase/recombinase [Bacillus cereus] gi|116585129|gb|ABK01238.1| putative integrase/recombinase [Bacillus cereus] gi|218540542|gb|ACK92938.1| phage integrase family protein [Bacillus cereus AH820] Length = 347 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 76/295 (25%), Positives = 126/295 (42%), Gaps = 57/295 (19%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 S+ T Q Y D FL ++ K I TI++LS+ ++ + + ++K +L++ Sbjct: 62 SERTKQQYLHDLSHFLRYI------KEAIGTIQELSHNDMEIYFYEL-SKKYAATTLRKK 114 Query: 92 LSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVD-----NVLLH 144 + ++ FLKY+ ++ S+ L ++KK + R L ++ ++D N ++ Sbjct: 115 KTVVQQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLYPEEVTQILDELKKSNYFVY 174 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQGKGDKIRIV 200 T+ +LL GLRI E + +++ S LR+ GKG+K R V Sbjct: 175 TA-------------FFLLTTTGLRIEEIATAKWADLVFHSSLNAYLLRVVGKGNKSREV 221 Query: 201 PLLPSVRKAILEYYDL----CPFDL-NLNIQLPLFRG--IRGKPLNPGV----------F 243 + A+ L D N + LP G R L+ V F Sbjct: 222 RIFEDTLDALCHVRSLRKQTTKLDASNTSAFLPKADGSNYRADYLSSLVAKKIEETNLTF 281 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 RY RQ R T HT RH A +L+ G +L+ I+ LGH + TT+ Y Sbjct: 282 LRY-RQDR--------ITPHTCRHFMANYLMEKGIELKKIRDYLGHESIMTTERY 327 >gi|296163972|ref|ZP_06846603.1| phage integrase family domain protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900676|gb|EFG80051.1| phage integrase family domain protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 358 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 84/181 (46%), Gaps = 32/181 (17%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQ------------NIMDDQSTLRIQGKGDKIRIVP 201 ARN A+ L+ GLRI+EA L N+ + + R KG K R+VP Sbjct: 166 ARNYAVARLVADVGLRINEARMLDLDDVRWELGRFGKLNVRHGKGSRR---KGPKPRVVP 222 Query: 202 LLPSVRKAILEYYD--LCPFDLNL-NIQLPLF----RGIRGKPL--NPGVFQRYI----- 247 L+ +++ + + L FD++ N PLF + I G + V++R + Sbjct: 223 LINGADRSLQWFIEDVLGLFDVDPKNHAAPLFPSERKNIDGTCMRATADVYRRALAEATD 282 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 R L R+ G T H LRH A+ L G +L +IQ +LGH TT Y +V++ + Sbjct: 283 RYLPRWSG---KLTPHVLRHFCASQLYLAGMNLFAIQELLGHAWTGTTARYIHVHATHVE 339 Query: 308 D 308 D Sbjct: 340 D 340 >gi|282882640|ref|ZP_06291251.1| phage integrase family protein [Peptoniphilus lacrimalis 315-B] gi|281297516|gb|EFA90001.1| phage integrase family protein [Peptoniphilus lacrimalis 315-B] Length = 327 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 56/251 (22%), Positives = 112/251 (44%), Gaps = 25/251 (9%) Query: 61 QTIRQLSYTEIRAFIS----KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116 + ++++ +IR +++ K+++ K+ +++R LS SF +L+ +S + + Sbjct: 86 KDVKRIVTDDIREYLTEYQEKKKSSKVTIDNIRRILS---SFFSWLEDEDYILKSPVRRI 142 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 +K ++ +++ + DN + R+ AI+ +L G+R+ E + L Sbjct: 143 HKVKTGTNIKETYSDEALELMRDNC----------TELRDLAIIDMLASTGMRVGEMVLL 192 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG- 235 +I ++ + GKG K R+V + K L+ Y D N LF ++ Sbjct: 193 NRNDIDFNERECIVFGKGSKERVV-YFDARTKIHLQNYLKSRTDDN----PALFVSLKSP 247 Query: 236 -KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 + L G + +R+ + LGL H R + AT + G + +Q +LGH ++ T Sbjct: 248 HERLKIGGVEVRLREYGKKLGLQ-KVHPHKFRRTLATMAIDKGMPIEQLQQLLGHRKIDT 306 Query: 295 TQIYTNVNSKN 305 T Y V N Sbjct: 307 TLQYAMVKQSN 317 >gi|15808369|gb|AAL08410.1|AF252852_3 unknown [Prevotella loescheii] Length = 418 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 NP R +R G+ + H RH+FAT L+NG D+ ++ +LGH + TTQ+Y Sbjct: 335 NPSWISRPLRAWIEKAGIQKHLSFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVY 394 Query: 299 TNV 301 V Sbjct: 395 AKV 397 >gi|323344390|ref|ZP_08084615.1| mobilizable transposon [Prevotella oralis ATCC 33269] gi|323094517|gb|EFZ37093.1| mobilizable transposon [Prevotella oralis ATCC 33269] Length = 418 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 NP R +R G+ + H RH+FAT L+NG D+ ++ +LGH + TTQ+Y Sbjct: 335 NPSWISRPLRAWIEKAGIQKHLSFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVY 394 Query: 299 TNV 301 V Sbjct: 395 AKV 397 >gi|294794983|ref|ZP_06760118.1| putative site-specific recombinase, phage integrase family [Veillonella sp. 3_1_44] gi|294454345|gb|EFG22719.1| putative site-specific recombinase, phage integrase family [Veillonella sp. 3_1_44] Length = 357 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 55/222 (24%), Positives = 94/222 (42%), Gaps = 42/222 (18%) Query: 117 RNLKKSNSLPRALNEKQALTL----VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172 +N K+ P+ + + +TL V N L + S ++ + A+ L + G+R SE Sbjct: 139 KNYMKNIDRPKHVKVRHMVTLSADEVKNFLSNIS------NSEHHALFKLAFATGMRRSE 192 Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKI----------------RIVPLLPSVRKAILEYYDL 216 L L +I +ST+ I KI RI+ + + ++++ Sbjct: 193 LLGLRWSDIDFKKSTISISQTALKIGSTAVISNTTKTTSSKRIIAIDTDTIQELMKHK-- 250 Query: 217 CPFD---------LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 D +N N+ P GI+G P P + ++ +G P + T H RH Sbjct: 251 TTIDKRRIKTMNWINNNLVFP---GIKGAPRCPDEVSKLCKKYANLIGKP-TFTMHGTRH 306 Query: 268 SFATHLLSNGGDLRSIQSILGHFRL-STTQIYTNVNSKNGGD 308 + AT L+ NG ++++IQ LGH T Y++V K D Sbjct: 307 THATLLIENGANMKAIQERLGHASFQETMDTYSHVTPKMEDD 348 >gi|225376010|ref|ZP_03753231.1| hypothetical protein ROSEINA2194_01647 [Roseburia inulinivorans DSM 16841] gi|225212165|gb|EEG94519.1| hypothetical protein ROSEINA2194_01647 [Roseburia inulinivorans DSM 16841] Length = 85 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 3/58 (5%) Query: 250 LRRYLG---LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + +Y G ++ T H RHSFAT+L+ ++R IQ +LGH ++TTQIYT V ++ Sbjct: 2 IHKYAGEIQADINITPHMFRHSFATYLMEEDVNIRYIQKMLGHASITTTQIYTYVTTE 59 >gi|206599577|ref|YP_002242016.1| gp33 [Mycobacterium phage Brujita] gi|206282726|gb|ACI06247.1| gp33 [Mycobacterium phage Brujita] gi|302858513|gb|ADL71260.1| gp33 [Mycobacterium phage island3] Length = 297 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/221 (22%), Positives = 99/221 (44%), Gaps = 40/221 (18%) Query: 93 SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152 + ++ +L+++ ++ ++ + K+ S+PR ++ V +L +H+ Sbjct: 65 GALSAWFLWLQQQGHRHDNPMVMIGRPKRPKSVPRPVSNLD----VQRLLAVRAHK---- 116 Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212 R A++ L GLR+ E + +++ + T+ + GKG+ +PL V Sbjct: 117 --RTKAMILLAAFQGLRVHEIAQIKGEHLDLIERTMTVTGKGNVTATLPLHHRV------ 168 Query: 213 YYDLCPFDLNLNIQLP----LFRGI-----RGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 + + Q+P F G R + ++ + + IR + +AH Sbjct: 169 --------VEIAYQMPRRGHWFPGPDRGHQRRESVSGTIKEAMIRA-------GVVGSAH 213 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 LRH F T LL G DLR++Q ++ H L++T+IYT V + Sbjct: 214 CLRHWFGTALLEAGVDLRTVQELMRHQSLTSTEIYTRVTDQ 254 >gi|119960917|ref|YP_947150.1| Tn554-related transposase A [Arthrobacter aurescens TC1] gi|119947776|gb|ABM06687.1| Tn554-related transposase A [Arthrobacter aurescens TC1] Length = 368 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 56/245 (22%), Positives = 106/245 (43%), Gaps = 31/245 (12%) Query: 77 KRRTQKIGDRSLKRSLSGIKS----FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 R ++GD +K + G +S FL ++ K + I L+ LPR L Sbjct: 123 ARHGVELGDLLVKWAAPGARSSWKPFLHHISKGRPQRRRAI----ALEAPVKLPRVLTVG 178 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-- 190 + +++D R+ + +L+ G+RI E L L ++ + +R+ Sbjct: 179 EVQSILDAC----------TRLRDRFLFAVLFDTGMRIGEVLGLRHDDLSAAEREVRVVA 228 Query: 191 -------QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGV 242 + K + R VP+ + + +Y L DL+ + + + L+ G G L+ Sbjct: 229 RLNENGARAKTGRPRTVPVSAELLRLYADYLHLEYGDLDSDYVFVNLWGGRVGHALSYRS 288 Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301 + +LRR G+ H RHS AT +L + L + S+LGH ++TT +Y ++ Sbjct: 289 VYDLVGRLRRRTGVDFDP--HWFRHSAATRMLRDSVPLEVVSSLLGHASVTTTMDVYGHL 346 Query: 302 NSKNG 306 +++ Sbjct: 347 TAEDA 351 >gi|332884088|gb|EGK04368.1| hypothetical protein HMPREF9456_01396 [Dysgonomonas mossii DSM 22836] Length = 410 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 20/142 (14%) Query: 166 CGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYDLCPF 219 CGL + +L NI DD+ L + GK +K + +PLL + + IL+ Y+ Sbjct: 256 CGLAYIDVKNLRKDNIRISFDDK--LWLIGKREKTGVSFTIPLL-DIPQRILDKYEGALS 312 Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279 D + LP+ P N V Y++++ G+ + H RH+FAT LS G Sbjct: 313 DDRV---LPV-------PSNQKV-NAYLKEIGSLCGIDKELSFHLARHTFATLTLSKGVS 361 Query: 280 LRSIQSILGHFRLSTTQIYTNV 301 + S+ +LGH + TTQIY + Sbjct: 362 IESVSKMLGHTNIRTTQIYARI 383 >gi|301311826|ref|ZP_07217748.1| integrase [Bacteroides sp. 20_3] gi|300829928|gb|EFK60576.1| integrase [Bacteroides sp. 20_3] Length = 405 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 63/251 (25%), Positives = 115/251 (45%), Gaps = 39/251 (15%) Query: 78 RRTQKIGDRSLKRSLSG--IKSFLKYLKKRKITTESNILN-MRNLKKSNSLPRALNE--- 131 +R K+ D L R ++G ++ F YLK K ++ ++ M+ KK +L A NE Sbjct: 149 KRDYKVDDMLL-REVNGELVRKFDLYLKAEKHCAQNTVIRYMKCFKKVINLAIA-NEWLT 206 Query: 132 ---------------KQALTLVD-NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175 KQ L+ + N + + + ++ ++ +Y GL + + Sbjct: 207 KNPFAGIKFHEVEVNKQFLSQAEINRIWQKEFKIERLELVRDVFIFCVYT-GLAFIDVYN 265 Query: 176 LTPQNIMDDQS----TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231 L ++I +D + ++ + K + + +PLL S+ K IL+ Y P+ L+ LP+ Sbjct: 266 LRSEHISEDSNGNLWIVKAREKTNNLCNIPLL-SIPKQILDKYKDNPYCLDKGTLLPV-- 322 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHF 290 P N + Y++++ G+ + T HT RHSFA+ + L+N L ++ +LGH Sbjct: 323 -----PCNQKM-NSYLKEIADLCGIKKNLTTHTARHSFASVIALANNVSLPNVAKMLGHS 376 Query: 291 RLSTTQIYTNV 301 TQ Y V Sbjct: 377 STRMTQHYAKV 387 >gi|329766934|ref|ZP_08258462.1| hypothetical protein HMPREF0428_00159 [Gemella haemolysans M341] gi|328837659|gb|EGF87284.1| hypothetical protein HMPREF0428_00159 [Gemella haemolysans M341] Length = 301 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 61/272 (22%), Positives = 121/272 (44%), Gaps = 13/272 (4%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 + S T+ SY+ D ++ ++LA E + L+ I +I R ++ +L Sbjct: 17 KEFSTNTINSYDRDLKKIFLYLA---ERGYSTDDYSWLNEEFISRYIDYLREKEYSSATL 73 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMR-NLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 R++S + F++YL KI N +N+ ++ K + +Q ++ + +V H Sbjct: 74 SRTISTVHIFVEYLWMEKII--PNRINIDVHIDKEEHQDLVIFTRQEISKILDVKTHN-- 129 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207 I R+ AI L Y G++ +E ++L +++ L+ + K + R V L Sbjct: 130 ---LIGYRDKAIFELSYSIGIKPTECINLELKDVNTTIGFLKYRKK-EGYRTVALNRESV 185 Query: 208 KAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 +AI Y +L ++ LF G+ ++ F + ++ ++ LGL R Sbjct: 186 EAIENYITELKKEYPDIKDDSKLFLNHDGEGISRQGFWKIFKKRQQDLGLTKELNTMNFR 245 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 +S A HLL + +Q +LG + + ++Y Sbjct: 246 NSLAIHLLEDKVPAEEVQELLGLKNIHSLKLY 277 >gi|295086576|emb|CBK68099.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 414 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 88/191 (46%), Gaps = 18/191 (9%) Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC-GLRISEALSLTPQNIMDDQSTLR 189 EK+ L D LL S +T ++ R + Y C G+ + LT +NI+ + Sbjct: 217 EKRYLQPKDLELLKNSPQTNFVLERARMLFLFSYYCYGMSFVDMAKLTTENIVVSEGIGH 276 Query: 190 IQGKGDKIR--------IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF-RGIRGKPLNP 240 I K +K + I+P+ P++ K ILE++ L + LP+ + G+ L Sbjct: 277 IVYKREKTKNVKNMKPLIIPVTPAL-KDILEWFKQNT-SLVGDYLLPIITKDYDGEQLYD 334 Query: 241 GVFQRY------IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 + RY +++L + LG+ + T + RH+ A L N +I ++LGH + T Sbjct: 335 HIRTRYQRLNNNLKKLGKILGVEKNLTTYVSRHTMAMTLQGNDVSRETISAVLGHRDIKT 394 Query: 295 TQIYTNVNSKN 305 T Y + S+N Sbjct: 395 TMTYLDSLSQN 405 >gi|168802255|ref|ZP_02827262.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC508] gi|189375754|gb|EDU94170.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC508] Length = 138 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 23/135 (17%) Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226 G R SEA L ++ + T ++ KG K R VP+ P L Sbjct: 7 GARWSEAEGLKQSQVLPGRITF-VKTKGKKNRTVPISP-----------------QLQAM 48 Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285 LP RG P ++ + ++R + LP H LRH+FA+H + GG++ +Q Sbjct: 49 LPKKRGALFSP----CYEAFDAAIKRAKIELPDGQLTHVLRHTFASHFMMRGGNILVLQK 104 Query: 286 ILGHFRLSTTQIYTN 300 ILGH + T Y + Sbjct: 105 ILGHSDIKMTMRYAH 119 >gi|310826836|ref|YP_003959193.1| Site-specific recombinase XerC [Eubacterium limosum KIST612] gi|308738570|gb|ADO36230.1| Site-specific recombinase XerC [Eubacterium limosum KIST612] Length = 303 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 1/80 (1%) Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS- 293 G +P +R +L+ GL T H+LRHSFAT L G D+R++ +LGH ++ Sbjct: 220 GSAYDPRTIERRFDKLKAEHGLSSGVTFHSLRHSFATRALEAGADMRTVSDLLGHSSVAF 279 Query: 294 TTQIYTNVNSKNGGDWMMEI 313 T Y++ +K + M +I Sbjct: 280 TMNCYSHSATKLKREQMEKI 299 >gi|222159805|gb|ACM47280.1| integrase-like protein IntD [Enterococcus avium] Length = 278 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 71/146 (48%), Gaps = 9/146 (6%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 ++ + G G+R+SE +T + ++ + ++GK R V L +R +L+Y Sbjct: 127 VMLTICGTGIRVSELQHITVEAAQTGRAEICMKGKN---RTVLLQKELRTRLLKYAK--- 180 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNG 277 +L +N + +FR GKPL+ +++L + P H LRH FA + Sbjct: 181 -ELGIN-EGHIFRTRSGKPLDRTNICHDMKKLCASARVDPRKVFPHNLRHLFARSFYAIE 238 Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNS 303 +L + ILGH R+ TT+IY ++ Sbjct: 239 KNLAHLADILGHSRIETTRIYVAASA 264 >gi|154489817|ref|ZP_02030078.1| hypothetical protein PARMER_00045 [Parabacteroides merdae ATCC 43184] gi|154089259|gb|EDN88303.1| hypothetical protein PARMER_00045 [Parabacteroides merdae ATCC 43184] Length = 407 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 16/150 (10%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYD 215 ++ LY CGLR + LT +N+ L+ + KG ++P + +L Sbjct: 256 FIFCLY-CGLRFCDVKDLTYRNVDYANRLLKFEQSKTKGHSASSGVVIP-LNDGLLSIIG 313 Query: 216 LCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 P D N L LP + +R++++ G+ + H RHSFA ++L Sbjct: 314 EAPADKNCLIFDLPTYESC------CKSVKRWVKRA----GIDKHISWHCARHSFAVNIL 363 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 +NG +++++ S+LGH L T+ YT K Sbjct: 364 NNGANIKTVASLLGHSGLKHTEKYTRAVDK 393 >gi|331675773|ref|ZP_08376491.1| resolvase (Protein D) [Escherichia coli H591] gi|331076547|gb|EGI47823.1| resolvase (Protein D) [Escherichia coli H591] Length = 259 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 40/182 (21%) Query: 153 DARNSAILYLLYGCGLRISEAL-------SLTPQNIMDDQSTL------------RIQGK 193 D +L L+ G RI+EAL SLTP +TL R+ Sbjct: 57 DLHRKMLLATLWNTGARINEALALTRSDFSLTPPYPFVQLATLKQRTEKAARTAGRMPAG 116 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLR 251 R+VPL S + L+ + +++P+ R + G+ +++ R +R Sbjct: 117 QQTHRLVPLSDSWYVSQLQ-------TMVATLKIPMERRNKRTGRTEKARIWEVTDRTVR 169 Query: 252 RYLG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 ++G + T HT RHS+A H+L G L+ +QS++GH +S+T++YT Sbjct: 170 TWIGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYT 229 Query: 300 NV 301 V Sbjct: 230 KV 231 >gi|259503340|ref|ZP_05746242.1| phage integrase family site-specific recombinase [Lactobacillus antri DSM 16041] gi|259168711|gb|EEW53206.1| phage integrase family site-specific recombinase [Lactobacillus antri DSM 16041] Length = 362 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 64/292 (21%), Positives = 119/292 (40%), Gaps = 37/292 (12%) Query: 56 EKITIQTIRQLSYTEIRAFISK-RRTQKIGDR-----SLKRSLSGIKSFLKYLK------ 103 + I+ +T+ +L +I +I + TQ R S+ RS++ ++S KYL Sbjct: 69 DSISTKTLEKLRRNDIMLYIDHLKHTQNAQGRLNSPTSINRSINALRSLFKYLTVTADIN 128 Query: 104 ------------KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET-- 149 K ++ LN R S+ + R + + + N H + Sbjct: 129 DGEPYFYRNVMLKIDSLNDTQTLNYRAHTLSSHMYRGQMKFDFINFIQNEYPHKCDKRAL 188 Query: 150 ---KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 K R+ AI+ L+ G G+R+SEA ++ ++ +Q L + KG + VP+ P Sbjct: 189 PAFKVNRERDIAIIALILGTGVRVSEAANVNLGDLNINQGLLDVVRKGGQRDSVPIAPWS 248 Query: 207 RKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 + + +Y + + L ++ G + + +R +++ G PL T Sbjct: 249 IQYLRDYLAIRAQRYHALKKDTACFLTVYHG-ETRRMTANAIERMVKKYSTAFGHPL--T 305 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 H LRH+ A+ + D + LG S T +YT+V + + EI Sbjct: 306 PHKLRHTLASEMYEVTKDQVLVAQQLGQKGTSATDLYTHVGVTQQREALDEI 357 >gi|134046324|ref|YP_001097809.1| phage integrase family protein [Methanococcus maripaludis C5] gi|132663949|gb|ABO35595.1| phage integrase family protein [Methanococcus maripaludis C5] Length = 295 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 86/185 (46%), Gaps = 27/185 (14%) Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQST 187 L+EKQ T++ V+ + + L+LL G+RISE ++ ++ ++D+S Sbjct: 115 LSEKQVATVLAKVMNYDYY---------VYTLFLL-KTGVRISEFQNILFNDVDLEDRSI 164 Query: 188 LRIQGKGDKIRIV----PLLPSVRKAILEYYDLCPFDLNLNIQLPLF----RGIRGKPLN 239 GKG K R V LL ++K I + NLN++ F +G + Sbjct: 165 YIRDGKGGKDRYVFIDNELLNHLKKYI-------AYRENLNLKTNCFFVTEQGKKVTNYA 217 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 F+ Y++++ + +P T H RH+F T + +L + I+GH L+TT Y Sbjct: 218 IDKFREYLKEVTK-DKIPFDVTPHVFRHTFGTLACEDEMNLIVLSKIMGHSNLNTTSGYV 276 Query: 300 NVNSK 304 + N + Sbjct: 277 HSNKE 281 >gi|253575298|ref|ZP_04852636.1| integrase [Paenibacillus sp. oral taxon 786 str. D14] gi|251845295|gb|EES73305.1| integrase [Paenibacillus sp. oral taxon 786 str. D14] Length = 344 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 65/313 (20%), Positives = 132/313 (42%), Gaps = 38/313 (12%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFIS------------- 76 GL + TL Y + + F+ + E ++ + +++ +R IS Sbjct: 40 GLRERTLVDY---AKHYGYFVDWLREAHADVEYVDEVTTQMVRDHISYLKYDRTRYEGHK 96 Query: 77 --KRRTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 + Q++G D ++ L +K+ L++ + + + ++ L++ L L + Sbjct: 97 YIPTKDQRVGLSDTTINIRLRTLKAIFNQLERDDLIEVNPLAKVKLLRQDVDLTNCLTDD 156 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-- 190 + +L + ++ R+ + L GLRISE L L +I D Q+ + Sbjct: 157 EV-----KAILAQPNRRDFVGFRDYVGIVTLLDSGLRISELLKLRAGDI-DFQTRFIVLP 210 Query: 191 --QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 K K R+VP+ K +L+ L + LF G+P++P F + ++ Sbjct: 211 GEMNKNRKPRMVPISAHTAKLLLQ---LIEENRQFFSTDRLFMSSFGEPISPNHFNKRLK 267 Query: 249 QLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 G+ TAH RH++A ++ NG D +IQ + G + T + Y +++ Sbjct: 268 YYGEKAGVAGKKMTAHVYRHTWARAMVLNGADPFTIQKMGGWADMRTMRRYVQMDT---- 323 Query: 308 DWMMEIYDQTHPS 320 D + + +D+ P+ Sbjct: 324 DDLRKSHDEFSPT 336 >gi|315607470|ref|ZP_07882465.1| mobilizable transposon [Prevotella buccae ATCC 33574] gi|315250653|gb|EFU30647.1| mobilizable transposon [Prevotella buccae ATCC 33574] Length = 418 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 NP R +R G+ + H RH+FAT L+NG D+ ++ +LGH + TTQ+Y Sbjct: 335 NPSWISRPLRAWIEKAGIQKHLSFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVY 394 Query: 299 TNV 301 V Sbjct: 395 AKV 397 >gi|312898354|ref|ZP_07757744.1| site-specific recombinase, phage integrase family [Megasphaera micronuciformis F0359] gi|310620273|gb|EFQ03843.1| site-specific recombinase, phage integrase family [Megasphaera micronuciformis F0359] Length = 306 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 85/184 (46%), Gaps = 24/184 (13%) Query: 126 PRA-----LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 PRA LN+ + TL+ ++ L W+ + L+ G+R SEAL+LTP++ Sbjct: 108 PRAKKIKYLNQFELHTLLSSLKLPPKINWDWL-------ILLIAKTGMRFSEALALTPKD 160 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEYYDLCPFD---LNLNIQLPLFRG 232 + +L ++ D +P SVRK L++ + F L P+F Sbjct: 161 FDFARQSLSVERTWDYKGKGGFMPTKNKSSVRKIQLDWQTIIQFSELIKGLPEDEPIF-- 218 Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 IRG+ N V R + +P+ + H LRH+ A+ LL G + S+ LGH + Sbjct: 219 IRGRVFNSTVNSILARHCKAQ-NIPV-ISIHGLRHTHASLLLFAGVSIASVARRLGHASM 276 Query: 293 STTQ 296 +TTQ Sbjct: 277 TTTQ 280 >gi|190576855|ref|YP_001966187.1| ResA resolvase [Klebsiella pneumoniae] gi|218561692|ref|YP_002394604.1| Resolvase (Protein D) [Escherichia fergusonii ATCC 35469] gi|110264439|gb|ABG56802.1| ResA resolvase [Klebsiella pneumoniae] gi|218350206|emb|CAQ86969.1| Resolvase (Protein D) [Escherichia fergusonii] gi|323958891|gb|EGB54567.1| phage integrase [Escherichia coli H489] Length = 258 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 57/245 (23%), Positives = 99/245 (40%), Gaps = 70/245 (28%) Query: 111 SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL-------- 162 S +L+ + ++ +P A++ AL L L+ + SA+L+ Sbjct: 2 SGLLSYSHPQQPAQMPVAIDYPAALALRQMALVQDELPKYLLAPEVSALLHYVPDLHRKM 61 Query: 163 ----LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL------- 211 L+ G RI+EAL+LT +GD +VP P V+ A L Sbjct: 62 LLATLWNTGARINEALALT---------------RGD-FSLVPPYPFVQLATLKQRTEKA 105 Query: 212 -----------EYYDLCPFD----------LNLNIQLPLFRGIR--GKPLNPGVFQRYIR 248 + + L P + +++PL R + G+ ++ R Sbjct: 106 ARTAGRAPAGSQAHRLVPLSDHHYVSQLQMMVATLKIPLERRNKRTGRTEKARIWDITDR 165 Query: 249 QLRRYLG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 +R ++G + T HT RHS+A H+L G L+ +QS++GH +S+T+ Sbjct: 166 TVRTWIGEAVEAAAVDGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTE 225 Query: 297 IYTNV 301 +YT V Sbjct: 226 VYTKV 230 >gi|227890002|ref|ZP_04007807.1| site-specific tyrosine recombinase XerS [Lactobacillus johnsonii ATCC 33200] gi|227849446|gb|EEJ59532.1| site-specific tyrosine recombinase XerS [Lactobacillus johnsonii ATCC 33200] Length = 356 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 79/349 (22%), Positives = 147/349 (42%), Gaps = 54/349 (15%) Query: 1 MEGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL------AFYT 54 ME N E++ EL ++++ + S T Y + R+F +L + + Sbjct: 1 METNKYLELIKQEL-ANMPDFVKEYNLGTSHSLTTTYQYLTEIRRFFDWLRQNNIASVSS 59 Query: 55 EEKITIQTIRQLSYTEIRAFISK-RRTQKIGDR-----SLKRSLSGIKSFLKYLKKRKIT 108 ++I + T+ L ++ +I + T+ R ++ RS++ ++S K+L IT Sbjct: 60 NKEIEVTTLENLQRNDVMLYIHHLKHTKNQQGRLNSPTTINRSINALRSLYKFLT---IT 116 Query: 109 TESN----ILNMRNLKKSNSL--PRALNEK---------------QALTLVDNVLLHTSH 147 +++N + + K NSL + LN + Q L ++N +H + Sbjct: 117 SDNNHGEPYFDRNVMLKINSLNDTKTLNYRAHVLESHMYMGDLKYQFLDFIENEYVHKCN 176 Query: 148 ET-----KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG---DKIRI 199 + K R+ AI+ L+ G G+R+SE + + +NI + L + KG D + I Sbjct: 177 KQSLPAFKKNHERDMAIIALILGTGIRVSECVGVNMRNINLKDAMLDVTRKGGQKDSVPI 236 Query: 200 ----VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 +P L R+ + Y D L + G + K + ++ + + G Sbjct: 237 AAWTIPYLKKYREIRADRYHAEKEDTAF--FLTRWHG-KTKRITTNAVEKMVNKYSAAFG 293 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 PL T H LRH+ A+ L D + LG + T +YT+V+ K Sbjct: 294 KPL--TPHKLRHTLASELYEVTKDQVLVAQQLGQKGTTATDLYTHVDQK 340 >gi|288869960|ref|ZP_06112412.2| putative integrase - phage associated [Clostridium hathewayi DSM 13479] gi|288868962|gb|EFD01261.1| putative integrase - phage associated [Clostridium hathewayi DSM 13479] Length = 424 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 65/256 (25%), Positives = 109/256 (42%), Gaps = 44/256 (17%) Query: 63 IRQLSYTEIRAFISKR-RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121 I+ L + I +F S +++K+ +L LS IK+ ++Y ++ I + M+ +K Sbjct: 152 IKDLRMSHIESFRSYMIKSKKLAQYNL--CLSRIKAIVRYAVQKDIMAKDITAGMKRVKI 209 Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 RAL ++ L E +D+ + LL GLR EAL+L ++I Sbjct: 210 DKKPKRALTSEERLLF----------EITDLDSFERCFINLLLYTGLRKCEALALDVKDI 259 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRK---AILEYYDLCPFDLNLNIQLPL----FRGIR 234 K ++I + L + +K + EY + I PL F I+ Sbjct: 260 ---------DLKKNQIYVSKTLVASKKINTCLQEYTKTAAGLRQIPIPAPLAKILFEFIK 310 Query: 235 GKP--LNPGVFQRYI-----------RQLRRYLGLPLST--TAHTLRHSFATHLLSNGGD 279 G+ L P RYI ++++ PLS T H RH++A+ L G D Sbjct: 311 GRSGILFPSKSGRYISTLDYKWEKILKKVQAVSSTPLSDDITPHIFRHTYASDLYKAGVD 370 Query: 280 LRSIQSILGHFRLSTT 295 ++ Q +LGH + TT Sbjct: 371 IKQAQYLLGHDDIKTT 386 >gi|160886609|ref|ZP_02067612.1| hypothetical protein BACOVA_04621 [Bacteroides ovatus ATCC 8483] gi|156107020|gb|EDO08765.1| hypothetical protein BACOVA_04621 [Bacteroides ovatus ATCC 8483] Length = 424 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 88/194 (45%), Gaps = 18/194 (9%) Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC-GLRISEALSLTPQNIMDDQSTLR 189 EK+ L D LL S +T ++ R + Y C G+ + LT +NI+ + Sbjct: 227 EKRYLQPKDLELLKNSPQTNFVLERARMLFLFSYYCYGMSFVDMAKLTTENIVVSEGIEH 286 Query: 190 IQGKGDKIR--------IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF-RGIRGKPLNP 240 I K +K + I+P+ P++ K ILE++ L LP+ + G+ L Sbjct: 287 IVYKREKTKNVKNMKPLIIPVTPAL-KDILEWFKQNT-SLVGKYLLPIITKDYDGEQLYD 344 Query: 241 GVFQRY------IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 + RY +++L + LG+ + T + RH+ A L N +I ++LGH + T Sbjct: 345 HIRTRYQRLNNNLKKLGKILGIEKNLTTYVSRHTMAMTLQGNDVSRETISAVLGHRDIKT 404 Query: 295 TQIYTNVNSKNGGD 308 T Y + S+N D Sbjct: 405 TMTYLDSLSQNVLD 418 >gi|186474388|ref|YP_001863359.1| integrase family protein [Burkholderia phymatum STM815] gi|184198347|gb|ACC76309.1| integrase family protein [Burkholderia phymatum STM815] Length = 421 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/202 (26%), Positives = 79/202 (39%), Gaps = 53/202 (26%) Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQSTLR----IQGKGDKIRI 199 H +W+ LLY GLRI+EA S T D T+R ++GKGD+ R+ Sbjct: 211 HRVRWL-------FTLLYLGGLRIAEAGSNTMGQFFVRRDTDGTMRWWLTVRGKGDRERL 263 Query: 200 VPLLPSVRKAILEY------------YDLCPFDLNLNIQLPLFRGIRGK--------PLN 239 VP + + Y ++ P L + G G+ P+N Sbjct: 264 VPATREMMSELARYRQSLGMTALPSPHEATPLVLPIGSTAGGASGRTGESSRRNTAAPVN 323 Query: 240 PG------------VFQRYIRQLRRY-------LGLPLSTTAHTLRHSFATHLLSNGGDL 280 VF RQLR + L +AH LRHS +H+ DL Sbjct: 324 QPLTRAALHTIVKRVFAGAARQLREHGAEFEARAALLEQASAHWLRHSAGSHMADRQVDL 383 Query: 281 RSIQSILGHFRLSTTQIYTNVN 302 R ++ LGH L+TT +Y + + Sbjct: 384 RLVRDNLGHASLATTSLYLHAD 405 >gi|146301334|ref|YP_001195925.1| phage integrase family protein [Flavobacterium johnsoniae UW101] gi|146155752|gb|ABQ06606.1| Bacteroides conjugative transposon integrase-like protein [Flavobacterium johnsoniae UW101] Length = 419 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 37/193 (19%) Query: 121 KSNSLPRALNEKQALTLVD-NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 K +P + ++ LT+ + N L T E + + +A+ L GLR S+ L + Sbjct: 230 KIKGIPEEESRREYLTIEELNALASTDCEKDVL--KRAALFSAL--TGLRHSDIQKLRWK 285 Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239 I + ++ K + V +P ++A+ LC G+P Sbjct: 286 EIAVEDGMAKLHFTQKKTKGVEYMPISQQAL----QLC-----------------GEPRL 324 Query: 240 PG--VFQ-----RYI-RQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288 PG VF+ +I R L++++ G+ + T H RH+FAT LS+G D+ ++ +LG Sbjct: 325 PGQLVFEDLPDPSWISRPLKKWVLSAGIKKNITFHCFRHTFATLQLSSGTDIYTVSKMLG 384 Query: 289 HFRLSTTQIYTNV 301 H + TTQIY V Sbjct: 385 HTNVKTTQIYAKV 397 >gi|241890154|ref|ZP_04777452.1| putative tyrosine recombinase XerD [Gemella haemolysans ATCC 10379] gi|241863776|gb|EER68160.1| putative tyrosine recombinase XerD [Gemella haemolysans ATCC 10379] Length = 299 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 64/283 (22%), Positives = 125/283 (44%), Gaps = 35/283 (12%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 + S T+ SY+ D ++ ++L E+ + Q L+ I +I R ++ +L Sbjct: 17 KEFSTNTINSYDRDLKKIFLYLE---EKGYSTQDYSWLNEEFISRYIDYLREKEYSSATL 73 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 R++S + F++YL K I N N+ +++++ LV + T HE Sbjct: 74 SRTISTVHIFVEYLWFEKF-----IPNRVNI------DVHIDKEEHQDLV----IFTRHE 118 Query: 149 -TKWIDA--------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI 199 +K +D R+ AI L Y G++ +E ++L +++ L+ + K D R Sbjct: 119 ISKILDVNTKNLIGYRDKAIFELSYSIGIKPTECINLELRDVNTTIGYLKYRKK-DGYRT 177 Query: 200 VPL----LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 + L + ++ K I+E P N+ LF G+ ++ F + ++ ++ LG Sbjct: 178 IALNKESVEAIEKYIVELKKEYP---NIKDDSKLFLNHDGEGISRQGFWKIFKKRQQELG 234 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 L R+S A HLL + +Q +LG + + ++Y Sbjct: 235 LTKELNTMNFRNSLAIHLLEDKVPAEEVQELLGLKNIHSLKLY 277 >gi|323139352|ref|ZP_08074404.1| integrase family protein [Methylocystis sp. ATCC 49242] gi|322395418|gb|EFX97967.1| integrase family protein [Methylocystis sp. ATCC 49242] Length = 317 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 64/262 (24%), Positives = 111/262 (42%), Gaps = 23/262 (8%) Query: 49 FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT 108 FLA+ E+ + +I + I A++ T+ + K+ L+ I+ +L +I Sbjct: 50 FLAWC--EQRGLASIVDIEPLHIGAYVEAM-TRSHSAPTAKQRLAAIRMLFDWLVTGQIV 106 Query: 109 TESNILNMRNLK---KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYG 165 + ++R K K P L+ +A L+D++ + T + R+ A++ L+ Sbjct: 107 PTNPAASVRGPKHVVKVGKTP-VLDPAEARALLDSIDV-----TAPVGLRDRALIGLMIY 160 Query: 166 CGLRISEALSLTPQNIMDDQSTL--RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223 R+ AL++ +++ L R+ KG K +P ++ + Y D C L Sbjct: 161 SFARVGAALAMKVEDVYVQNRRLWVRLHEKGGKRHEMPCHHNLEAYLHAYIDGC--GLAS 218 Query: 224 NIQLPLFRGI-RGK------PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 + + PLFR I RG PL IR+ G+ H+ R + T L N Sbjct: 219 DPKAPLFRTIGRGAGALTFTPLPQANAYAMIRRRAVAAGIATKVGNHSFRATGITAYLKN 278 Query: 277 GGDLRSIQSILGHFRLSTTQIY 298 GG L S+ H TTQ+Y Sbjct: 279 GGTLEKAASMANHASTRTTQLY 300 >gi|237714130|ref|ZP_04544611.1| transposase [Bacteroides sp. D1] gi|262407180|ref|ZP_06083729.1| transposase [Bacteroides sp. 2_1_22] gi|294646950|ref|ZP_06724569.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294809675|ref|ZP_06768364.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|229445954|gb|EEO51745.1| transposase [Bacteroides sp. D1] gi|262355883|gb|EEZ04974.1| transposase [Bacteroides sp. 2_1_22] gi|292637720|gb|EFF56119.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294443099|gb|EFG11877.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] Length = 409 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 20/150 (13%) Query: 162 LLYGC--GLRISEALSLTPQNIM-DDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYD 215 L+ C G ++A+S+T +N+ DD+ +L ++ K D + V LLP I +Y D Sbjct: 253 FLFACYTGTAYADAVSITRKNLFRDDEGSLWLKYQRKKTDYLGRVKLLPEAVALIEKYRD 312 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274 + + LF P + + ++ LR GL H RHSFA+ + L Sbjct: 313 --------DTRETLF-----PPQDYHTLRANMKSLRLMAGLSQDLVYHMGRHSFASLVTL 359 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 G + +I +LGH + TTQIY V K Sbjct: 360 EEGVPIETICKMLGHSNIKTTQIYARVTPK 389 >gi|229551651|ref|ZP_04440376.1| integrase [Lactobacillus rhamnosus LMS2-1] gi|229314969|gb|EEN80942.1| integrase [Lactobacillus rhamnosus LMS2-1] Length = 307 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 74/153 (48%), Gaps = 12/153 (7%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-KIRIVPLLP-----SVRKAILE 212 ++ LL GLR +EAL LTP + D TLRI D K P SVR L+ Sbjct: 138 MILLLAKTGLRFAEALGLTPADFDLDSLTLRINKTWDYKSATGKFAPTKNKSSVRTIALD 197 Query: 213 YYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 Y F + +L P+F GK + +++ G+P+ +AH LRH+ Sbjct: 198 YKTAAKFAMLIQSLPKDKPIFVP-DGKRIYNETINDILKRHCENAGIPV-ISAHGLRHTH 255 Query: 270 ATHLLSNGGDLRSIQSILGH-FRLSTTQIYTNV 301 A+ L+ G +L+++ LGH L+T ++Y ++ Sbjct: 256 ASLLIGKGINLQAVAKRLGHSSSLTTQKVYIHL 288 >gi|59712648|ref|YP_205424.1| DNA integration/recombination/invertion protein [Vibrio fischeri ES114] gi|59480749|gb|AAW86536.1| DNA integration/recombination/invertion protein [Vibrio fischeri ES114] Length = 325 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 66/159 (41%), Gaps = 44/159 (27%) Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226 G R EA SLT + + T KG+K R VP + K + E + Sbjct: 193 GCRWGEAESLTSTQLTPHRITF-THTKGNKHRTVP----ISKELYE-------------E 234 Query: 227 LPLFRGIRGKPLNPGVFQRYIRQL-----RRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281 LP G +F I+ R + LP + H LRH+FA+H + NGG++ Sbjct: 235 LPKKNG--------RLFSNCIKSFKMAVNRTGVQLPKGQSTHVLRHTFASHFMMNGGNIL 286 Query: 282 SIQSILGHFRLSTTQIYTNVN-------------SKNGG 307 +Q ILGH ++ T Y + + +KNGG Sbjct: 287 VLQQILGHASITDTMKYAHFSPAHLEDAIKLNPLAKNGG 325 >gi|187734150|ref|YP_001880474.1| integrase [Shigella boydii CDC 3083-94] gi|187431142|gb|ACD10416.1| integrase [Shigella boydii CDC 3083-94] Length = 375 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 31/46 (67%) Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +P H L H+FA+H + NGG++ ++Q ILGH ++ TT IY ++ Sbjct: 313 VPDGQAVHALHHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 358 >gi|160945433|ref|ZP_02092659.1| hypothetical protein FAEPRAM212_02955 [Faecalibacterium prausnitzii M21/2] gi|158443164|gb|EDP20169.1| hypothetical protein FAEPRAM212_02955 [Faecalibacterium prausnitzii M21/2] Length = 357 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 70/298 (23%), Positives = 119/298 (39%), Gaps = 34/298 (11%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 + LS+ +L Y R F FL T Q I ++ + +I + Q++ D ++ Sbjct: 65 KNLSQGSLDFYVAKGRSFFRFLG------DTEQPINTITEETVEDYIFYMKDQQLHDTTI 118 Query: 89 KRSLSGIKSFL------KYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 +L +++FL YL+K I ++ ++ L + L E T Sbjct: 119 NTNLRMVRAFLYWCMEKGYLEKYPIRLVRADDPIKEPYTTDELQKLLKEPDCKT------ 172 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVP 201 + + RN I+ L G G R S L+L ++ T+ + K +IVP Sbjct: 173 ------CSFAEYRNWVIVNFLLGTGCRASTLLNLQIGDLDLFAGTVFFRHMKARNQQIVP 226 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 L ++ K + EY + D PLF G + I G+ T+ Sbjct: 227 LSKALVKIMEEYLEHRTSDPTA----PLFVSEYGNQMTLNSLGNAIWNYNHSRGVE-KTS 281 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 H RH++A + GGD +Q +LGH L+ T+ Y + + D + YD +P Sbjct: 282 MHLFRHTYAKLYIQAGGDPFRLQKLLGHADLTMTRRYVALYA----DDLRANYDALNP 335 >gi|284991910|ref|YP_003410464.1| integrase family protein [Geodermatophilus obscurus DSM 43160] gi|284065155|gb|ADB76093.1| integrase family protein [Geodermatophilus obscurus DSM 43160] Length = 309 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 3/148 (2%) Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 LL T + + D R+ A++ L G R +E L ++ T+++ GKG +IR+VP Sbjct: 132 LLATCNGRSFTDRRDHAMIRLFVDTGCRRAEIAELAVDSVDLANQTIQVLGKGRRIRVVP 191 Query: 202 LLPSVRKAILEYYDLCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 +A+ Y + D + L L RG PL+PG + + + R +G+ + Sbjct: 192 FGSRTAQALGRYLRMRDKDPWAHTGHLWLSEKGRG-PLSPGGIVQMLERRGRSVGI-TNL 249 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILG 288 AH RH+ A +NGG + ++G Sbjct: 250 HAHQFRHTAAHRWGANGGSETDLMRLMG 277 >gi|283851146|ref|ZP_06368430.1| TOBE domain protein [Desulfovibrio sp. FW1012B] gi|283573542|gb|EFC21518.1| TOBE domain protein [Desulfovibrio sp. FW1012B] Length = 393 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 54/183 (29%), Positives = 82/183 (44%), Gaps = 38/183 (20%) Query: 145 TSHETKWIDA-RNSAI---------LYL-LYGCGLRISEALSLTPQNIMD-DQSTLRIQG 192 T+ W DA RN+ I +YL L G ++ E L+L + +D Q+T+ G Sbjct: 72 TAAFDAWRDAARNAPIRRARERMRLVYLMLRHSGAKLGEVLALNERTDIDLAQATVGFGG 131 Query: 193 KGDKIRIVPLLPSVRKAI-------LEYYDLCPFDLNLNIQLPLFRGIRGK--PLNPGVF 243 P PS R + +E + CP + R +RG+ L+PG Sbjct: 132 TR------PEEPSRRVVVPQTFLDEVERFAACPAN----------RALRGELFHLDPGFV 175 Query: 244 QRYIRQLRRYLGLPLSTTAHT-LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 +R + + R GLP + T LRHS A LL +G L +Q +LGH L T IY + + Sbjct: 176 RRKLYEQARKAGLPTGRVSPTSLRHSRAVELLRSGVPLPVVQVMLGHSSLVLTSIYCSFS 235 Query: 303 SKN 305 ++ Sbjct: 236 DQD 238 >gi|160890418|ref|ZP_02071421.1| hypothetical protein BACUNI_02860 [Bacteroides uniformis ATCC 8492] gi|156860150|gb|EDO53581.1| hypothetical protein BACUNI_02860 [Bacteroides uniformis ATCC 8492] Length = 409 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 20/150 (13%) Query: 162 LLYGC--GLRISEALSLTPQNIM-DDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYD 215 L+ C G ++A+S+T +N+ DD+ +L ++ K D + V LLP I +Y D Sbjct: 253 FLFACYTGTAYADAVSITRKNLFRDDEGSLWLKYQRKKTDYLGRVKLLPEAVALIEKYRD 312 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274 + + LF P + + ++ LR GL H RHSFA+ + L Sbjct: 313 --------DTRETLF-----PPQDYHTLRANMKSLRLMAGLSQDLVYHMGRHSFASLVTL 359 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 G + +I +LGH + TTQIY V K Sbjct: 360 EEGVPIETICKMLGHSNIKTTQIYARVTPK 389 >gi|116329653|ref|YP_799372.1| XerD related protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116122546|gb|ABJ80439.1| XerD related protein (integrase family) [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 298 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 64/278 (23%), Positives = 121/278 (43%), Gaps = 60/278 (21%) Query: 60 IQTIRQLSYTEIRAF-----------ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT 108 I+ IRQ +Y + A+ + + +KI + L R ++ +L+KRK++ Sbjct: 18 IKIIRQRNYKKATAYTYMKYNLDFLHFADKPAEKITVKDLNR-------YMDHLRKRKVS 70 Query: 109 TESNILNMRNLK-------KSNSLP------RALNEKQALTLVDNVLLHTSHETKWIDAR 155 + + +N+ +LK K N R N A+T + + + +T +A+ Sbjct: 71 SSTIQINVSSLKMFFEDVMKMNLFQDFQRPVREYNNPNAITYKE---MQSILKTASSNAK 127 Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLL--------PSVR 207 + + L+Y GLR+ E ++L ++ + ++ I+ VP+L P+ Sbjct: 128 HELMCGLVYFGGLRVGELITLRWAHLDTKRKSIHIK--------VPVLSQSRTVEIPAEL 179 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV----FQRYIRQLRRYLGLPLSTTAH 263 +++ Y+ + P GK L +R I ++ R G+ T Sbjct: 180 GTLIKKYEREVISSSSTYLFP------GKSLGSHTTSRNVERIISEIGRNSGISSPITVF 233 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 TLRHS A HL+++G L ++ LGH L++T+ Y V Sbjct: 234 TLRHSRALHLIADGSSLNHVKDFLGHKTLASTESYLPV 271 >gi|159897174|ref|YP_001543421.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779] gi|159890213|gb|ABX03293.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779] Length = 328 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 53/219 (24%), Positives = 98/219 (44%), Gaps = 19/219 (8%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLK--KSNSLPRALNEKQALTLVDNVLLHTSHET 149 LS ++ LK + + T + +LK K N+ A + + + ++ Sbjct: 92 LSALRGVLKMAWRMGLMTGEDYTRAVDLKTVKGNAPDAAAGRSLTAAELRALFAACAADS 151 Query: 150 KWIDARNSAILYLLY-GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 I R++AIL L Y G GLR +E ++L + + + L I+GKG+K+R + R+ Sbjct: 152 SPIGRRDAAILALAYAGGGLRRAEIVNLDLSDFNPETAMLTIRGKGNKVRTAYVRGGARE 211 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR------YIRQLRRYLGLPLST-- 260 A+ E+ + + PLF ++ + +++R YI RR G + Sbjct: 212 ALDEWLAVRGDEAG-----PLFWRLQAGGVAGQMYERLSDQAIYILCQRR--GKEANVRH 264 Query: 261 -TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + H +R +F + L G D+ ++ + GH +TT Y Sbjct: 265 FSPHDIRRTFISDQLDAGTDVLTVARLAGHSNANTTSRY 303 >gi|322836440|ref|YP_004215817.1| integrase [Rahnella sp. Y9602] gi|321170993|gb|ADW76690.1| integrase family protein [Rahnella sp. Y9602] Length = 260 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 55/228 (24%), Positives = 96/228 (42%), Gaps = 52/228 (22%) Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL------------LYGC 166 L + LP A++ AL L L+ + SA+L+ L+ Sbjct: 11 LHQMAQLPVAIDYPAALALRQMALIQDELPKYLLAPEVSALLHYVPDLHRKMLLSTLWNT 70 Query: 167 GLRISEALSLT-------PQNIMDDQSTL------------RIQGKGDKIRIVPLLPSVR 207 G RI+EAL+LT P +TL R+ +R++PL ++ Sbjct: 71 GARINEALALTRSDFNLAPPYPFVQLATLKQRAEKAARTAGRLPAGSQALRLIPLSDALY 130 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG---------- 255 + L+ + +++PL R + GK +++ R +R ++ Sbjct: 131 VSQLQM-------MVATLKIPLERRNKRTGKTEKARIWEITDRTVRSWISEAVEAASCDG 183 Query: 256 --LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 184 VTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSVSSTEVYTRV 231 >gi|225390518|ref|ZP_03760242.1| hypothetical protein CLOSTASPAR_04273 [Clostridium asparagiforme DSM 15981] gi|225043423|gb|EEG53669.1| hypothetical protein CLOSTASPAR_04273 [Clostridium asparagiforme DSM 15981] Length = 269 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 14/141 (9%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221 + G+R+SE + + ++ I KGDK+R + + ++R +L + + D Sbjct: 121 FMAATGVRVSELVGVLVADVRLGYKD--IHSKGDKVRRIYIPKTLRTELLSWLEEEKRDH 178 Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL----PLSTTAHTLRHSFATHLLSNG 277 LF G P++ +R QL+ + GL P H+ RH FA L Sbjct: 179 G-----RLFLNNLGDPMSTSAVRR---QLKVFSGLYQIDPERMYPHSFRHYFAKTFLEAC 230 Query: 278 GDLRSIQSILGHFRLSTTQIY 298 GD+ + ++LGH L TT+IY Sbjct: 231 GDITLLSNLLGHENLETTRIY 251 >gi|320173114|gb|EFW48332.1| Integrase [Shigella dysenteriae CDC 74-1112] Length = 375 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 31/46 (67%) Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +P H L H+FA+H + NGG++ ++Q ILGH ++ TT IY ++ Sbjct: 313 VPDGQAVHALHHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 358 >gi|330399472|ref|YP_004030570.1| DNA integration/recombination/inversion protein [Burkholderia rhizoxinica HKI 454] gi|312170209|emb|CBW77248.1| DNA integration/recombination/inversion protein [Burkholderia rhizoxinica HKI 454] Length = 102 Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 4/69 (5%) Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 S + H H+ T +L NG D+R +Q +L H +L++TQ+YT V + M EIY TH Sbjct: 16 SGSCHLFHHTMVTLMLENGADVRFMQVMLHHAQLTSTQMYTQVAIRE----MNEIYTATH 71 Query: 319 PSITQKDKK 327 P+ ++ ++ Sbjct: 72 PAWLERPEQ 80 >gi|303248069|ref|ZP_07334335.1| TOBE domain protein [Desulfovibrio fructosovorans JJ] gi|302490626|gb|EFL50531.1| TOBE domain protein [Desulfovibrio fructosovorans JJ] Length = 394 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 72/153 (47%), Gaps = 17/153 (11%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGK--GDKIRIVPLLPSVRKAILEYYD 215 + +L G ++ E L+L + +D QST+ G + R V + S+ + +L + Sbjct: 98 VYLMLRHSGGKLGEVLALNERTDIDMAQSTVSFGGADPNESPRKVVVPKSLIEEVLRFA- 156 Query: 216 LCPFDLNLNIQLPLFRGIRGK--PLNPGVFQRYIRQLRRYLGLPLSTTAHT-LRHSFATH 272 P RGIRG+ L+PG +R + + R GLP + T LRHS A Sbjct: 157 ----------ASPANRGIRGELFRLDPGFVRRKLYEQARRAGLPPGRVSPTSLRHSRAVE 206 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 LL G L +Q +LGH L T IY + + ++ Sbjct: 207 LLRGGVPLPVVQVMLGHSSLVLTSIYCSFSDQD 239 >gi|268796563|ref|YP_003310958.1| integrase [Sebaldella termitidis ATCC 33386] gi|268616661|gb|ACZ11027.1| integrase family protein [Sebaldella termitidis ATCC 33386] Length = 271 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 11/143 (7%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 I+ L G+RISE +T + + + ++++ +GK IR + L + K + EY C Sbjct: 123 IIMTLANTGIRISELEFITVEALKKESTSIKNKGK---IREIILPKKLIKDLKEY---CK 176 Query: 219 FDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSN 276 + NI P+F G P++ R ++ + + S AH RH FA + Sbjct: 177 KN---NITNGPVFISKAGNPIDITYIHRELKTISGQARIKKSKVHAHAFRHLFAIQYMKR 233 Query: 277 GGDLRSIQSILGHFRLSTTQIYT 299 + S+ ILGH L TT+IYT Sbjct: 234 NNNALSLADILGHSSLETTRIYT 256 >gi|13475206|ref|NP_106770.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|14025957|dbj|BAB52556.1| integrase/recombinase [Mesorhizobium loti MAFF303099] Length = 232 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 60/218 (27%), Positives = 106/218 (48%), Gaps = 17/218 (7%) Query: 92 LSGIKSFLKYLKKRKITTES-NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150 ++ +++FL+Y ++++M + + PRA++ T+V LL + Sbjct: 2 IAHLRAFLRYCGDHGEAAGGLHVIDMPRVYRGELPPRAMD----WTMVRR-LLASIRRRA 56 Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKA 209 D R+ AIL+L+ GLR SE +L +I TLR+ Q K + ++PL + Sbjct: 57 ARDWRDYAILHLMAYYGLRPSEVATLRLDSIDWKARTLRVEQRKTRSVLVLPLAGRTLRL 116 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP----GVFQRYIRQLRRYLGLPLS-TTAHT 264 + Y + D ++ LF IR P+ P GV + + ++ GL L ++++ Sbjct: 117 LHRYLQVGRPD---SVLPQLFLRIR-SPIKPLKHYGVITVFTYRAQKS-GLSLGGVSSYS 171 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 LRH+FA LL G D+++I +LGH L T +Y + Sbjct: 172 LRHAFAMRLLRRGVDVKAIGDLLGHRSLEATCVYLRAD 209 >gi|152973358|ref|YP_001337138.1| putative prophage gp Int for integrase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150958207|gb|ABR80237.1| putative prophage gp Int for integrase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 335 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 66/308 (21%), Positives = 114/308 (37%), Gaps = 42/308 (13%) Query: 8 EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECD--------TRQFLIFLAFYTEEKIT 59 E ++FE + W + E R L +L Y RQ + AF + Sbjct: 34 EALAFEQYTVQNPWQEEKEDRRTLKELVDSWYSAHGITLKDGLKRQLAMHHAFECMGEPL 93 Query: 60 IQTIRQLSYTEIRA------FISKRRTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESN 112 + ++ R + R +++ R+L L+ ++ L + + E+ Sbjct: 94 ARDFDAQMFSRYREKRLKGEYARSNRVKEVSPRTLNLELAYFRAVFNELNRLGEWKGENP 153 Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172 + NMR + L + Q L+ H + + ++ + G R SE Sbjct: 154 LKNMRPFRTEEMEMAWLTQDQISQLLGECKRHEHPDLE-------TVVRICLATGARWSE 206 Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232 A SL + + T KG K R VP+ E Y+ P D + + Sbjct: 207 AESLRKSQLAKYKITY-TNTKGRKNRTVPISK-------ELYETLPDDKKGRLFSDCY-- 256 Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 G F+ + R + LP H LRH+FA+H + NGG++ +Q +LGH + Sbjct: 257 --------GAFRSALE--RTGIELPPGQLTHVLRHTFASHFMMNGGNILVLQRVLGHTDI 306 Query: 293 STTQIYTN 300 T Y + Sbjct: 307 KMTMRYAH 314 >gi|261406276|ref|YP_003242517.1| site-specific tyrosine recombinase XerS [Paenibacillus sp. Y412MC10] gi|261282739|gb|ACX64710.1| integrase family protein [Paenibacillus sp. Y412MC10] Length = 360 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 72/290 (24%), Positives = 121/290 (41%), Gaps = 54/290 (18%) Query: 58 ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK------------KR 105 + ++T+R S T R +++ RR ++ R LS ++S YL KR Sbjct: 70 LELETLRMDSITGYRLYLTTRREGTNSRITVSRKLSSLRSLFHYLSQIAEDEDFYPLLKR 129 Query: 106 KITTESNILNMRNLKKSNSLPRA--------------LNEKQALTLVDNVLLHTSHETKW 151 I + I + K + + + ++E + +N +HE Sbjct: 130 NIMAKVEIKRIHKPKDTAAKLKGKILEEEELQDFITYIHEGYGHDVENNKQALYAHEQNK 189 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG--DKIRIVPL-LPSVRK 208 + R++ I L+ GLR+SE ++L +I + L + KG D+ P+ + K Sbjct: 190 V--RDACIASLILNSGLRVSEVVNLNLADIDLNNKMLHVYRKGNNDETFKTPVYFRAQAK 247 Query: 209 AILEYYDLCPFDLNL---NIQLP-----LFRGIR-----GKPLNPGVFQRYIRQLRRYLG 255 LE+Y L L ++P LF +R G+ + Q I + + G Sbjct: 248 DDLEHY------LQLRQTRYKVPKKEKALFVALRNGQNEGQRMTKRAIQAMIIKYAKRFG 301 Query: 256 LPLSTTAHTLRHSFAT-HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 P S T H LRHSFAT + L N D+ + LGH TT++Y ++ K Sbjct: 302 KP-SLTVHKLRHSFATDYYLQN--DIYKTKEQLGHASTETTEVYAHLTDK 348 >gi|212691988|ref|ZP_03300116.1| hypothetical protein BACDOR_01483 [Bacteroides dorei DSM 17855] gi|212665380|gb|EEB25952.1| hypothetical protein BACDOR_01483 [Bacteroides dorei DSM 17855] Length = 308 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 25/156 (16%) Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG--------KGDK--IRIVPLLPSVRKA 209 +Y+ GLRI E +L +I + T+ +Q +GDK ++V P + + Sbjct: 133 IYISLSTGLRIGEVCALRWSDIDIEAGTISVQRTIERIYVIEGDKKHTKLVINTPKTKNS 192 Query: 210 ILEYYDLCPFDLNL-NIQLPLFRGI---------RGKPLNPGVFQRYIRQLRRYLGLPLS 259 E P L ++ PL + + P P ++ Y ++L LG+P Sbjct: 193 CRE----IPMSKELISMVKPLKKIVNTDYYVLTNEPSPTEPRTYRNYYKRLMEQLGIP-K 247 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 H LRHSFAT + + D +++ +LGH +STT Sbjct: 248 LKYHGLRHSFATRCIESNCDYKTVSVLLGHSNISTT 283 >gi|29347338|ref|NP_810841.1| transposase [Bacteroides thetaiotaomicron VPI-5482] gi|167762412|ref|ZP_02434539.1| hypothetical protein BACSTE_00766 [Bacteroides stercoris ATCC 43183] gi|237723042|ref|ZP_04553523.1| transposase [Bacteroides sp. 2_2_4] gi|253570441|ref|ZP_04847849.1| transposase [Bacteroides sp. 1_1_6] gi|265764111|ref|ZP_06092679.1| transposase [Bacteroides sp. 2_1_16] gi|293372587|ref|ZP_06618969.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|299148364|ref|ZP_07041426.1| integrase [Bacteroides sp. 3_1_23] gi|317479065|ref|ZP_07938206.1| phage integrase [Bacteroides sp. 4_1_36] gi|29339238|gb|AAO77035.1| transposase [Bacteroides thetaiotaomicron VPI-5482] gi|167699518|gb|EDS16097.1| hypothetical protein BACSTE_00766 [Bacteroides stercoris ATCC 43183] gi|229447564|gb|EEO53355.1| transposase [Bacteroides sp. 2_2_4] gi|251839390|gb|EES67473.1| transposase [Bacteroides sp. 1_1_6] gi|263256719|gb|EEZ28065.1| transposase [Bacteroides sp. 2_1_16] gi|291515084|emb|CBK64294.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] gi|292632396|gb|EFF50992.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|298513125|gb|EFI37012.1| integrase [Bacteroides sp. 3_1_23] gi|301162793|emb|CBW22340.1| putative phage integrase [Bacteroides fragilis 638R] gi|316904721|gb|EFV26534.1| phage integrase [Bacteroides sp. 4_1_36] Length = 409 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 20/150 (13%) Query: 162 LLYGC--GLRISEALSLTPQNIM-DDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYD 215 L+ C G ++A+S+T +N+ DD+ +L ++ K D + V LLP I +Y D Sbjct: 253 FLFACYTGTAYADAVSITRKNLFRDDEGSLWLKYQRKKTDYLGRVKLLPEAVALIEKYRD 312 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274 + + LF P + + ++ LR GL H RHSFA+ + L Sbjct: 313 --------DTRETLF-----PPQDYHTLRANMKSLRLMAGLSQDLVYHMGRHSFASLVTL 359 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 G + +I +LGH + TTQIY V K Sbjct: 360 EEGVPIETICKMLGHSNIKTTQIYARVTPK 389 >gi|54023527|ref|YP_117769.1| putative phage integrase [Nocardia farcinica IFM 10152] gi|54015035|dbj|BAD56405.1| putative phage integrase [Nocardia farcinica IFM 10152] Length = 290 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 69/154 (44%), Gaps = 5/154 (3%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSVRKAI 210 D R +L L CGLR +E + +++++D L + GKG K R +P+ + I Sbjct: 125 DPRTRIMLRLAAECGLRRAEVAQVHIRDLVEDFDGWVLIVHGKGGKDRRLPIPDDIAALI 184 Query: 211 -LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG-VFQRYIRQLRRYLGLPLSTTAHTLRHS 268 P D + LF G L+ V R L + T H LRH Sbjct: 185 RAGARGHSPHDHTPSRGW-LFPGQDHGHLSAAHVGVLCSRALAKVQTSGQVWTMHKLRHR 243 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 FAT D+R++Q LGH ++TTQIYT V+ Sbjct: 244 FATTAYRATRDIRAVQEALGHSSVATTQIYTAVD 277 >gi|53714292|ref|YP_100284.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|52217157|dbj|BAD49750.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] Length = 409 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 20/150 (13%) Query: 162 LLYGC--GLRISEALSLTPQNIM-DDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYD 215 L+ C G ++A+S+T +N+ DD+ +L ++ K D + V LLP I +Y D Sbjct: 253 FLFACYTGTAYADAVSITRKNLFRDDEGSLWLKYQRKKTDYLGRVKLLPEAVALIEKYRD 312 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274 + + LF P + + ++ LR GL H RHSFA+ + L Sbjct: 313 --------DTRETLF-----PPQDYHTLRANMKSLRLMAGLSQDLVYHMGRHSFASLVTL 359 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 G + +I +LGH + TTQIY V K Sbjct: 360 EEGVPIETICKMLGHSNIKTTQIYARVTPK 389 >gi|269121142|ref|YP_003309319.1| integrase family protein [Sebaldella termitidis ATCC 33386] gi|268615020|gb|ACZ09388.1| integrase family protein [Sebaldella termitidis ATCC 33386] Length = 263 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 81/310 (26%), Positives = 135/310 (43%), Gaps = 59/310 (19%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKI--TIQTIRQLSYTE 70 ++++E +N LQ + S+ T+ +Y D ++FL FL E I I R+ Sbjct: 3 KIIEEYKNTLQ----MKFFSQTTINAYMADIKKFLEFLPEKNLEIIPKEIHNYRKYLKNN 58 Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 + R+ + + +SL GI LK K +++ + + L R K+ L A+N Sbjct: 59 YKVSTINRKVTTLNN--FFKSL-GIDVRLKAEKVHRMSIKDDFLTEREYKRL--LKFAIN 113 Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 EK +T+V VL HT G+R+SE + +N+ + I Sbjct: 114 EKIRITMV--VLAHT---------------------GIRVSELKYIHVENL--KTGIVEI 148 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ- 249 + KG KIRI+ L ++ + +Y C R I+ + V + YI Sbjct: 149 ENKG-KIRIIILSKNLINILKKY---CGE-----------RNIKSGSI-IEVSRIYIHNS 192 Query: 250 LRRYL-----GLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 L++ GL S AH RH FA L ++ ++ ILGH L TT+IYT++N Sbjct: 193 LKQSAANARGGLKKSKVHAHAFRHLFAVQFLKKNNNIAALADILGHSSLETTRIYTSLNK 252 Query: 304 KNGGDWMMEI 313 + + + +I Sbjct: 253 RQFQEMLEDI 262 >gi|258651476|ref|YP_003200632.1| integrase [Nakamurella multipartita DSM 44233] gi|258652719|ref|YP_003201875.1| integrase [Nakamurella multipartita DSM 44233] gi|258554701|gb|ACV77643.1| integrase family protein [Nakamurella multipartita DSM 44233] gi|258555944|gb|ACV78886.1| integrase family protein [Nakamurella multipartita DSM 44233] Length = 617 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 15/170 (8%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQST--LRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCP 218 +L G+R E L LT ++ S LRI GK R VPL P ++ I + + P Sbjct: 365 ILARTGMRKGELLGLTTDAVVQIGSAYWLRIPVGKLHNDRYVPLHPQLKTMIDNWLEQRP 424 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278 N ++ LF RG+P+ P ++ G+ H LRH+ AT ++ G Sbjct: 425 DWQNSHL---LFTD-RGRPIPPTRVDHAVQTAATAAGI-GHVHPHQLRHTLATQAINRGM 479 Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGDW-------MMEIYDQTHPSI 321 L +I ++LGH +S T +Y + + D + +Y Q P++ Sbjct: 480 SLEAIAALLGHKTMSMTLVYARIADRTVADQYFTVTEKVQALYQQQQPAM 529 >gi|163855346|ref|YP_001629644.1| integrase/recombinase [Bordetella petrii DSM 12804] gi|163259074|emb|CAP41373.1| integrase/recombinase [Bordetella petrii] Length = 402 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 73/300 (24%), Positives = 130/300 (43%), Gaps = 40/300 (13%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL-SYTEIRAFISK 77 + +LQ+L + G++ +L+++ + FL + E+ + I+ + SY E A S Sbjct: 115 EGFLQHLSAQ-GVAPGSLRTWRSRLFRLEYFLLHHGIEEFRLIRIQHINSYIESLAGFS- 172 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES--NILNMRNLKKSNSLPRALN---EK 132 ++ +L +K +Y ES N + + ++ LP + + Sbjct: 173 -------SNTVGSTLRILKQLFQYACSNGFHVESFDNAIPIVRRQRRQRLPTVFSVGETE 225 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-Q 191 + L+ +D + + RN AI LL GLRIS+ L + ++ + I Q Sbjct: 226 KILSAID--------RSNALGKRNYAIFLLLARMGLRISDVRGLMFHHFDWSRNVISIVQ 277 Query: 192 GKGDKIRIVPLLPSVRKAILEY------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245 K K +P++ V AI++Y + CP L + F G L + Q+ Sbjct: 278 QKTKKPVDLPIMDEVGWAIIDYLRNGRPHSECP--LVFIKHIAPFDG-----LTSALHQQ 330 Query: 246 YIRQLRRY-LGLPLSTT--AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 ++ LRR + +P + H+LRHS AT LL +++I LGH + +T Y VN Sbjct: 331 MLQYLRRADIHVPANKPRGVHSLRHSLATTLLQKQVPIQTISHTLGHLDIGSTSGYVQVN 390 >gi|325523725|gb|EGD01985.1| integrase family protein [Burkholderia sp. TJI49] Length = 318 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 73/314 (23%), Positives = 123/314 (39%), Gaps = 61/314 (19%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 R LS LT + D + FL T + + +R + R F + + RS Sbjct: 2 RALSSLTTE----DAVAYRAFLRRPTPHERWVGPVRPRGAPDWRPF-----SGALSARSA 52 Query: 89 KRSLSGIKSFLKYLKKRK--ITTESNILNMRNLKKSNSL--PRALNEKQAL---TLVDNV 141 +LS + + ++L +++ + + +R+ + + +L A E + L + D + Sbjct: 53 AYALSVLGALFRWLIEQRYLLANPFAGVKVRDTRGATALDTSHAFTEGEWLLVRAIADGL 112 Query: 142 -----LLHTSHETKWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDD---QSTLRI 190 + + + W A + ++L Y GLR SE + T I D + L++ Sbjct: 113 EFRKPVSPAAPASGWTPAAAQRLRFILDFGYATGLRASELVGATLGGIETDAHGDAWLKV 172 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL--FRGIRGKPLNPG------- 241 GKG K V L P R A+ Y + +LP+ R PL P Sbjct: 173 IGKGSKAARVALPPLARTALDRYL--------VARRLPVTPARWRPDTPLIPSLAEDGAA 224 Query: 242 ---------VFQRYIRQLRRYLGLPLSTTA--------HTLRHSFATHLLSNGGDLRSIQ 284 V QR+ Q + A H +RH+ ATH L+ G +L +++ Sbjct: 225 AITSVRLWKVMQRFFAQTAELVDAEHPALAQKLRQASPHWMRHTHATHALARGAELTTVR 284 Query: 285 SILGHFRLSTTQIY 298 L H +STT IY Sbjct: 285 DNLRHASISTTSIY 298 >gi|294778055|ref|ZP_06743489.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] gi|294448113|gb|EFG16679.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] Length = 200 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 20/148 (13%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYY 214 A ++ LY CGL + LT +N+ L+ + KG ++P + +L Sbjct: 48 AFIFCLY-CGLHLCNVKDLTFKNVDYANRLLKFEQSKAKGHSASSGVVIP-LNDGLLSII 105 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL---GLPLSTTAHTLRHSFAT 271 P D N I + ++ + ++R++ G+ + H RHSFA Sbjct: 106 GEAPTDKNCLI------------FDLSTYESCYKSVKRWVKRAGIDKHMSWHCARHSFAV 153 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYT 299 ++L+NG ++++I S+LGH L T+ YT Sbjct: 154 NILNNGTNIKTIASLLGHSGLKHTEKYT 181 >gi|238854267|ref|ZP_04644611.1| site-specific tyrosine recombinase XerS [Lactobacillus gasseri 202-4] gi|238833078|gb|EEQ25371.1| site-specific tyrosine recombinase XerS [Lactobacillus gasseri 202-4] Length = 356 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 12/166 (7%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNI-MDDQ--STLRIQGKGDKIRI----VPLLPSVR 207 R+ AI+ L+ G G+R+SE + + +NI + D+ +R G+ D + I +P L + Sbjct: 189 RDIAIIALILGTGIRVSECVGVNVRNINLKDEMLDVVRKGGQKDSVPIADWTIPYLKKYQ 248 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 K + Y D+ L + G + + + ++ + + G PL T H LRH Sbjct: 249 KIRTDRYHANKNDIAF--FLTRWHG-KTRRMTANAVEKMVNKYSAAFGKPL--TPHKLRH 303 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 + A+ L D + LG + T +YT+V+ K D + +I Sbjct: 304 TLASELYEVTKDQVLVAQQLGQKGTTATDLYTHVDQKKQKDALNKI 349 >gi|298529892|ref|ZP_07017294.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509266|gb|EFI33170.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 386 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 70/149 (46%), Gaps = 18/149 (12%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAI--LEY 213 I+ +L G R SE L N ++ T +I G K K R +PL S + + ++Y Sbjct: 232 IILMLLLTGARKSEVLKAKWHNFDFERRTWQIPGTDTKTGKTRTIPLSDSALEVLDKIKY 291 Query: 214 YDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 D CP+ N + Q P +F+ + R+ GL H LRHSF++ Sbjct: 292 VDGCPYVFPNPDTQKPF----------TAIFRSW-DTARKKAGLG-EVRIHDLRHSFSSF 339 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 L+++G + + +LGH ++ TT Y ++ Sbjct: 340 LINSGRSIYEVSELLGHTQIKTTMRYAHL 368 >gi|160885083|ref|ZP_02066086.1| hypothetical protein BACOVA_03081 [Bacteroides ovatus ATCC 8483] gi|293371572|ref|ZP_06617989.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|156109433|gb|EDO11178.1| hypothetical protein BACOVA_03081 [Bacteroides ovatus ATCC 8483] gi|292633455|gb|EFF52021.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 390 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 68/163 (41%), Gaps = 46/163 (28%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 A L+ Y GLR S+ +LT NI++ I + SV+ Sbjct: 238 AFLFCCYA-GLRYSDFTNLTSANIVEFHQETWI-----------IYKSVKTG-------- 277 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST----------------- 260 + ++LPL+ GK + + QRY + L ++ Sbjct: 278 -----MEVRLPLYLLFEGKGIQ--ILQRYKDDFNSFFKLKDNSNINKELNILAGLAKIDK 330 Query: 261 --TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + HT RH+ AT LL NG ++ ++Q +LGH + TTQ+Y N+ Sbjct: 331 RVSFHTARHTNATLLLYNGANITTVQKLLGHKSVKTTQVYANI 373 >gi|113476634|ref|YP_722695.1| phage integrase [Trichodesmium erythraeum IMS101] gi|110167682|gb|ABG52222.1| phage integrase [Trichodesmium erythraeum IMS101] Length = 189 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 4/149 (2%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG--DKIRIVPLLPSVRKAILE 212 R+ AIL LL+ LR SE +++ +I T+ I+GKG DK RI +V A+ + Sbjct: 25 RDYAILRLLWDNALRRSEVVAIDIGDISLSDRTIWIKGKGTQDKERITINHRTV-AALKD 83 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 Y + +N + + L G L +++ LG+ + H +RHS TH Sbjct: 84 YLSIRKGGINDLLFISLSSANWGNRLADDTVYNLVKRTCSELGIDKPMSPHKIRHSAITH 143 Query: 273 LLS-NGGDLRSIQSILGHFRLSTTQIYTN 300 L + GD+R +Q H + T +Y + Sbjct: 144 FLDKSDGDIRKVQQYSRHKNVQTVLVYDD 172 >gi|317480814|ref|ZP_07939897.1| phage integrase [Bacteroides sp. 4_1_36] gi|316903018|gb|EFV24889.1| phage integrase [Bacteroides sp. 4_1_36] Length = 409 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 20/150 (13%) Query: 162 LLYGC--GLRISEALSLTPQNIM-DDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYD 215 L+ C G ++ +S+T +N+ DD+ +L ++ K D + V LLP I +Y D Sbjct: 253 FLFACYTGTAYADVVSITRENLFWDDEGSLWLKYRRKKTDYLGRVKLLPEALALIEKYRD 312 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274 + + LF P + + ++ LR GL H RHSFA+ + L Sbjct: 313 --------DTRATLF-----PPQDYHTLRANMKSLRLMAGLSQDLVYHMGRHSFASLVTL 359 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 G + +I +LGH + TTQ+Y V K Sbjct: 360 EEGVPIETISKMLGHSNIKTTQVYARVTPK 389 >gi|290474148|ref|YP_003467025.1| fimbriae regulatory protein [Xenorhabdus bovienii SS-2004] gi|289173458|emb|CBJ80237.1| fimbriae regulatory protein [Xenorhabdus bovienii SS-2004] Length = 234 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 67/158 (42%), Gaps = 9/158 (5%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI--------RIVPLLPS 205 ARN ++++ + G R+SE LSL ++ D +LR+Q + R + LL Sbjct: 26 ARNICMMFMGFIHGFRVSELLSLKLSDVDLDSRSLRVQRLKNGFSTIHPMVSREIQLLRQ 85 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 K Y P N + LF G+ ++ + IRQ L + H L Sbjct: 86 WLKGRPNYLPGTP-QANSEVSDWLFLSRSGQRMSRQQVYKIIRQTSLKAKLSICANPHML 144 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 RH+ L NG D R IQ LGH + T YT N+ Sbjct: 145 RHACGYALADNGVDTRLIQDYLGHRNIRHTVRYTASNA 182 >gi|253565241|ref|ZP_04842696.1| integrase [Bacteroides sp. 3_2_5] gi|251945520|gb|EES85927.1| integrase [Bacteroides sp. 3_2_5] Length = 395 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 71/155 (45%), Gaps = 17/155 (10%) Query: 150 KWIDARNSAIL-YLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 K ID + +L Y L+ C GLR S+ L +I ++ + + K + +P Sbjct: 240 KIIDEQEKEVLQYFLFSCYTGLRYSDLKMLKTSSIKNNILHINMH----KTNCLVSIPLS 295 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 +KA+ L P +N +FR K N R ++Q+ + G+P T H R Sbjct: 296 QKAL----QLLPNKINSESDY-VFRVYCNKVTN-----RVLKQVGKRYGIPKKLTCHVAR 345 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 H+FAT + G + + +LGH L TTQIY + Sbjct: 346 HTFATVSIILGIPIEVVSKLLGHSSLKTTQIYAKI 380 >gi|225870541|ref|YP_002746488.1| tyrosine recombinase XerC [Streptococcus equi subsp. equi 4047] gi|254799369|sp|C0MBC3|XERS_STRE4 RecName: Full=Tyrosine recombinase xerS gi|225699945|emb|CAW93891.1| tyrosine recombinase XerC [Streptococcus equi subsp. equi 4047] Length = 356 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 74/299 (24%), Positives = 118/299 (39%), Gaps = 58/299 (19%) Query: 58 ITIQTIRQLSYTEIRAFISKRR---------TQK-IGDRSLKRSLSGIKSFLKYLKKRKI 107 + + T+ LS ++ AFI R T+K + ++ R+LS + S KYL + Sbjct: 66 VDLTTLEHLSKKDMEAFILYLRERPSLNIYSTKKGVSQTTINRTLSALSSLYKYLTEEVE 125 Query: 108 TTESNILNMRNL-------KKSNSLP-RALNEKQALTLVDNVLLHTSHETKWID------ 153 RN+ KK +L RA N KQ L L D + + K + Sbjct: 126 NEHGEPYFYRNVMKKVATKKKRETLAARAENIKQKLFLGDETMAFLDYVDKEYEYKLSNR 185 Query: 154 ---------ARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVP 201 R+ AI+ LL G+R+SEA++L +++ M R GK D + + Sbjct: 186 AKASFRKNKERDLAIIALLLASGIRLSEAVNLDLKDVNLNMMLVEVTRKGGKRDSVNVAA 245 Query: 202 LLP-------SVRKA--ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 SVRK E D+ F L +RG+ + ++ ++ + + Sbjct: 246 FAKPHLEAYLSVRKDRYQAEKQDVAFF-------LTAYRGLPNR-IDASSIEKMVGKYSE 297 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV---NSKNGGD 308 G + T H LRH+ AT L + LGH T +YT++ KN D Sbjct: 298 --GFKIRVTPHKLRHTLATRLYDTTKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354 >gi|159904961|ref|YP_001548623.1| integrase family protein [Methanococcus maripaludis C6] gi|159886454|gb|ABX01391.1| integrase family protein [Methanococcus maripaludis C6] Length = 295 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 86/185 (46%), Gaps = 27/185 (14%) Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQST 187 L+EKQ T++ V+ + + L+LL G+RISE ++ ++ ++D+S Sbjct: 115 LSEKQVATVLAKVMNYDYY---------VYTLFLL-KTGVRISEFQNILFNDVDLEDRSI 164 Query: 188 LRIQGKGDKIRIV----PLLPSVRKAILEYYDLCPFDLNLNIQLPLF----RGIRGKPLN 239 GKG K R V LL ++K I + NLN++ F +G + Sbjct: 165 YIRDGKGGKDRYVFIDNELLNHLKKYI-------AYRENLNLKTDCFFVTEQGKKVTNYA 217 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 F+ Y++++ + +P T H RH+F T + +L + I+GH L+TT Y Sbjct: 218 IDKFRDYLKEVTK-DKIPFDVTPHVFRHTFGTLACEDEMNLIVLSKIMGHSNLNTTSGYV 276 Query: 300 NVNSK 304 + N + Sbjct: 277 HSNKE 281 >gi|323139542|ref|ZP_08074588.1| integrase family protein [Methylocystis sp. ATCC 49242] gi|322395221|gb|EFX97776.1| integrase family protein [Methylocystis sp. ATCC 49242] Length = 189 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 14/158 (8%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-------QGKGDKIRIVPLLPSV 206 ARN +L L + G+R++E +L +++ +T+R Q KG R V L+ S Sbjct: 26 ARNRCLLMLSWLAGMRVAEIAALKLSDVLAPDNTIRAEIQLSPEQTKGSSARTV-LISSQ 84 Query: 207 RKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 K+ LE Y L P N PL GK + + + + GL +T+ H+ Sbjct: 85 LKSELEAYIKSLPP---NPAPDRPLIASKTGKRFSANGLCQVMLHIYDAAGLDRATS-HS 140 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 R +F T L G ++R + ++ GH + TTQ Y ++N Sbjct: 141 GRRTFITTLAHKGVNVRVLAALAGHKHIGTTQRYIDLN 178 >gi|255693814|ref|ZP_05417489.1| integrase [Bacteroides finegoldii DSM 17565] gi|260620384|gb|EEX43255.1| integrase [Bacteroides finegoldii DSM 17565] Length = 409 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 60/228 (26%), Positives = 101/228 (44%), Gaps = 32/228 (14%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 +L+ L+ +K + K + + + + + K+ S PRAL+ + L D Sbjct: 184 TLRGYLAILKKICRIAYKEGHSEKYHFCHFKLPKQKESTPRALSRENFEKLRD------- 236 Query: 147 HETKWIDARNSAIL---YLLYGC--GLRISEALSLTPQNIM-DDQSTLRIQ---GKGDKI 197 + + R S I+ L+ C G ++A+S+T +N+ DD +L ++ K D + Sbjct: 237 --LEIPEKRRSHIITKDLFLFACYTGTAYADAVSITRENLFTDDGGSLWLKYRRKKTDYL 294 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 V LLP I +Y D + + LF P + + ++ LR GL Sbjct: 295 GRVKLLPEAVALIEKYRD--------DTRETLF-----PPQDYHTLRGNMKALRLMAGLS 341 Query: 258 LSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 H RHSFA+ + L G + +I +LGH + TTQIY V+ K Sbjct: 342 QDLVYHMGRHSFASLVTLEEGVPIETISKMLGHSNVRTTQIYARVSPK 389 >gi|254303994|ref|ZP_04971352.1| bacteriophage integrase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324186|gb|EDK89436.1| bacteriophage integrase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 370 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 81/176 (46%), Gaps = 24/176 (13%) Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 ++Y + GLR+ E L+L +I D+ T+ Q ++ ++ + E+ DL Sbjct: 199 DCLIYFTFYTGLRLGEVLALRWDDIKDNILTINRQ-YNKRVEVIDI--GKNNLTYEFKDL 255 Query: 217 CPFDLNLNIQLP---------------LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 + I LP L I GKP + QR + L + L + + Sbjct: 256 KTKNSKREIPLPIKILDLLKDLPKQFDLIFTINGKPFDRKRPQRRMISLCKTLKIEYRS- 314 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQ 316 H++RHS+AT L ++++QS++GH +STT IYT+V D +EI D+ Sbjct: 315 FHSIRHSYATRLFELDIPIKTVQSLMGHSDMSTTMDIYTHVMK----DKKLEILDK 366 >gi|322688580|ref|YP_004208314.1| phage integrase [Bifidobacterium longum subsp. infantis 157F] gi|320459916|dbj|BAJ70536.1| putative phage integrase [Bifidobacterium longum subsp. infantis 157F] Length = 343 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 70/301 (23%), Positives = 118/301 (39%), Gaps = 31/301 (10%) Query: 19 QNWLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 ++WL + L RG S T+++Y ++ +L + + + ++ Sbjct: 13 RDWLHHWLPKVRGSSPKTVEAYRIGLESYVRWLETTEGTQRSHIGFGHFDRARLGRWVEW 72 Query: 78 RRTQK-IGDRSLKRSLSGIKSFLKY--LKKRKITTESNILNMRNLKKSNSLP-RALNEKQ 133 RT++ DR++ ++ ++ FL + L+ +T N +K P L E+ Sbjct: 73 MRTERGYSDRTIMLRMTTMRVFLDHAGLEHPALTALGNDAAGIRVKPPARKPVDHLGEEH 132 Query: 134 ALTLVDNVLLHTSHETKWI--DA---RNSAILYLLYGCGLRISEALSLTPQNI-MDDQST 187 L+ T W DA RN +L L+Y RI E +LT ++ MD + Sbjct: 133 TKALL----------TAWGTGDAKSRRNRMLLILMYDTAARIGELAALTIADVGMDKPAR 182 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 + + GK K R+VPL R + Y + P + PLF R + P R Sbjct: 183 VTLTGKRGKSRVVPLGERTRTHLAAYLEEFHPGPSMRDGDRPLFHSTRNGAIQPLSVDRI 242 Query: 247 IRQLRRYLG---------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L+ +P H +R + A L G L I +LGH +STT Sbjct: 243 DEILKTAAARARRGTCPSMPERVHCHLIRRTRAMDLYQQGVPLPLIMQLLGHESMSTTSA 302 Query: 298 Y 298 + Sbjct: 303 F 303 >gi|29347856|ref|NP_811359.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|253572433|ref|ZP_04849835.1| integrase [Bacteroides sp. 1_1_6] gi|29339758|gb|AAO77553.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|251837848|gb|EES65937.1| integrase [Bacteroides sp. 1_1_6] Length = 409 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 20/150 (13%) Query: 162 LLYGC--GLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYD 215 L+ C G ++ +S+T +N+ D+++ L ++ + K V LLP I +Y D Sbjct: 253 FLFACYTGTAYADVVSITRENLFTDEENNLWLKYRRKKTNYLGRVKLLPEALVLIEKYRD 312 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274 + ++ LF P + + ++ LR GL HT RHSFA+ + L Sbjct: 313 --------DARMTLF-----PPQDYHTLRANMKSLRLMAGLSQDLVYHTARHSFASLITL 359 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 G + +I +LGH + TTQIY V K Sbjct: 360 EEGVPIETISKMLGHSNIKTTQIYARVTPK 389 >gi|116629648|ref|YP_814820.1| site-specific tyrosine recombinase XerS [Lactobacillus gasseri ATCC 33323] gi|116095230|gb|ABJ60382.1| Site-specific recombinase XerD [Lactobacillus gasseri ATCC 33323] Length = 356 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 12/166 (7%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNI-MDDQ--STLRIQGKGDKIRI----VPLLPSVR 207 R+ AI+ L+ G G+R+SE + + +NI + D+ +R G+ D + I +P L + Sbjct: 189 RDIAIIALILGTGIRVSECVGVNVRNINLKDEMLDVVRKGGQKDSVPIADWTIPYLKKYQ 248 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 K + Y D+ L + G + + + ++ + + G PL T H LRH Sbjct: 249 KIRTDRYHANKNDIAF--FLTRWHG-KTRRMTANAVEKMVNKYSAAFGKPL--TPHKLRH 303 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 + A+ L D + LG + T +YT+V+ K D + +I Sbjct: 304 TLASELYEVTKDQVLVAQQLGQKGTTATDLYTHVDQKKQKDALNKI 349 >gi|15897309|ref|NP_341914.1| XerC/D integrase-recombinase protein (xerC/D) [Sulfolobus solfataricus P2] gi|284174561|ref|ZP_06388530.1| XerC/D integrase-recombinase protein (xerC/D) [Sulfolobus solfataricus 98/2] gi|13813520|gb|AAK40704.1| XerC/D integrase-recombinase protein (xerC/D) [Sulfolobus solfataricus P2] gi|261601982|gb|ACX91585.1| integrase family protein [Sulfolobus solfataricus 98/2] Length = 291 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 29/155 (18%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEY 213 ++ I+ LL GLR +E LS+ ++I + + +R++ K + RIV K +L Sbjct: 136 KDKLIIRLLLDTGLRANELLSVLVKDIDLENNMIRVRNTKNGEERIV-FFTDETKLLLRK 194 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ-------RYIRQLRRYLGLPLSTTAHTLR 266 Y I+GK +F R +++L + +G+ L H LR Sbjct: 195 Y------------------IKGKKAEDKLFDLKYDTLYRKLKRLGKKVGIDLR--PHILR 234 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 H+FAT L G ++ ++Q +LGH + TTQIYT++ Sbjct: 235 HTFATLSLKRGINVITLQKLLGHKDIKTTQIYTHL 269 >gi|167621189|ref|ZP_02389820.1| Fels-2 prophage protein [Burkholderia thailandensis Bt4] Length = 317 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 16/156 (10%) Query: 153 DARNSAILYLLYGC---GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 + RN +L + C G R EA L I Q ++ K K R VP+ ++ + Sbjct: 145 EGRNVHVLLISKVCLATGARWGEAEGLRRTQIKGGQIQF-VKTKSSKARSVPITDALERE 203 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 ++ ++ + + LF + F+ + R L LP H LRH+F Sbjct: 204 LIAHFG----NYGDSDTGRLFEA------SSSAFREAVE--RAGLVLPDGQLTHVLRHTF 251 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 A+H + NGG++ ++Q LGH L+ T Y +++ ++ Sbjct: 252 ASHFMMNGGNILALQRALGHHSLTMTMRYAHLSPEH 287 >gi|320353143|ref|YP_004194482.1| integrase family protein [Desulfobulbus propionicus DSM 2032] gi|320121645|gb|ADW17191.1| integrase family protein [Desulfobulbus propionicus DSM 2032] Length = 393 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 18/151 (11%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAI--LEYY 214 A L LL GC R E L + ++ + RI K K R VPL S + + L + Sbjct: 232 APLLLLLGC--RKRELLDSRWEEFDLERRSWRIPMSKSGKARHVPLSLSALEILRQLPRW 289 Query: 215 DLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 + CP+ + N + +LP + R R+ GLP H LRHS A+++ Sbjct: 290 EGCPYVIPNPDTRLPFVQ-----------MHRAWDNARKAAGLP-DVRMHDLRHSMASNM 337 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 +++G + + +LGH +L TTQ Y +++ + Sbjct: 338 VNSGRSIYEVAKVLGHSQLKTTQRYAHLSQE 368 >gi|227537674|ref|ZP_03967723.1| phage integrase family protein [Sphingobacterium spiritivorum ATCC 33300] gi|227242288|gb|EEI92303.1| phage integrase family protein [Sphingobacterium spiritivorum ATCC 33300] Length = 416 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%) Query: 152 IDARNSAILYLLYGC--GLRISEALSLTPQNIM---DDQSTLRIQ-GKGDKIRIVPLLPS 205 I+ S + L+ C GL + +L+ +NIM D + L + K D + VPLL Sbjct: 246 IERLQSVLDMFLFSCYTGLAYIDISNLSRENIMKGIDGKDWLMTKRQKTDTLVKVPLLYQ 305 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 I++ Y P P+ R Y++++ G+ + T H Sbjct: 306 A-STIIKNYKEHPVAKASGTIFPVISNQR--------MNGYLKEIADICGISKNLTFHLA 356 Query: 266 RHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 RH+FAT + LSNG + S+ +LGH + TTQIY V Sbjct: 357 RHTFATTVTLSNGVPIESVSKMLGHTSIRTTQIYAKV 393 >gi|119471652|ref|ZP_01614037.1| mobilizable transposon, int protein [Alteromonadales bacterium TW-7] gi|119445431|gb|EAW26718.1| mobilizable transposon, int protein [Alteromonadales bacterium TW-7] Length = 377 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 71/151 (47%), Gaps = 32/151 (21%) Query: 162 LLYGC--GLRISEALSLTPQ--NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 L+GC G+R S+ LT + ++D ++T + ++ L+Y L Sbjct: 231 FLFGCLTGMRWSDIQKLTWEKLTMIDPRATFQ---------------HIKTKQLQYLHL- 274 Query: 218 PFDLNLNIQLP------LFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 P D + + P +F+G++ N + Q +R G+ T H RH+FA Sbjct: 275 PSDATMLLGTPGEDHERVFKGLKYSSYTNVALTQWMLRA-----GITKHITFHCARHTFA 329 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +L+N D+ ++ +LGH L TTQIYT++ Sbjct: 330 VRMLTNDVDIYTVSKLLGHSELKTTQIYTDI 360 >gi|331006573|ref|ZP_08329863.1| Integrase [gamma proteobacterium IMCC1989] gi|330419606|gb|EGG93982.1| Integrase [gamma proteobacterium IMCC1989] Length = 328 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 20/156 (12%) Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 + ++ L G R SEA L N+ D++ + K K R++P + + Y Sbjct: 184 APVVRLCLATGSRWSEANGLKASNLFDNR-VIYSDTKNGKQRVIP----ITSKLSSYLRS 238 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 F N LF R F++ + R + LP + H LRH++A+H + Sbjct: 239 QAFPTNTG---RLFDSCRS------AFRKALE--RTSIELPQGQSTHVLRHTYASHFVMK 287 Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 GGD+ ++++ILGH L T Y +++ D+M + Sbjct: 288 GGDILTLKNILGHSDLKVTMRYAHLSP----DYMQQ 319 >gi|308179940|ref|YP_003924068.1| integrase [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045431|gb|ADN97974.1| integrase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 305 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 13/144 (9%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD----KIRIVPLL--PSVRKAILEYYD 215 L+ G+R +EAL +TP + TL I D K P SVRK L++ Sbjct: 140 LIAKTGIRFAEALGVTPADFDFAHQTLSISKTWDYKSAKSDFAPTKNNSSVRKVPLDWQT 199 Query: 216 LCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 + F L P+F ++ K N V Y+ +L ++ +P+ + H LRH+ A+ Sbjct: 200 VIQFSQLTKKLPEDHPIF--VQAKVYNDTV-NHYLERLCKHASIPV-ISVHGLRHTHASL 255 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQ 296 LL G + S+ LGH ++TTQ Sbjct: 256 LLYAGVSIASVARRLGHSNMTTTQ 279 >gi|260641922|ref|ZP_05413998.2| integrase [Bacteroides finegoldii DSM 17565] gi|260624125|gb|EEX46996.1| integrase [Bacteroides finegoldii DSM 17565] Length = 436 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 20/150 (13%) Query: 162 LLYGC--GLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYD 215 L+ C G ++ +S+T +N+ D+++ L ++ + K V LLP I +Y D Sbjct: 280 FLFACYTGTAYADVVSITRENLFTDEENNLWLKYRRKKTNYLGRVKLLPEALVLIEKYRD 339 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274 + ++ LF P + + ++ LR GL HT RHSFA+ + L Sbjct: 340 --------DARMTLF-----PPQDYHTLRANMKSLRLMAGLSQDLVYHTARHSFASLITL 386 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 G + +I +LGH + TTQIY V K Sbjct: 387 EEGVPIETISKMLGHSNIKTTQIYARVTPK 416 >gi|163855610|ref|YP_001629908.1| integrase/recombinase [Bordetella petrii DSM 12804] gi|163855757|ref|YP_001630055.1| integrase/recombinase [Bordetella petrii DSM 12804] gi|163259338|emb|CAP41638.1| integrase/recombinase [Bordetella petrii] gi|163259485|emb|CAP41785.1| integrase/recombinase [Bordetella petrii] Length = 379 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 73/300 (24%), Positives = 130/300 (43%), Gaps = 40/300 (13%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL-SYTEIRAFISK 77 + +LQ+L + G++ +L+++ + FL + E+ + I+ + SY E A S Sbjct: 92 EGFLQHLSAQ-GVAPGSLRTWRSRLFRLEYFLLHHGIEEFRLIRIQHINSYIESLAGFS- 149 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES--NILNMRNLKKSNSLPRALN---EK 132 ++ +L +K +Y ES N + + ++ LP + + Sbjct: 150 -------SNTVGSTLRILKQLFQYACSNGFHVESFDNAIPIVRRQRRQRLPTVFSVGETE 202 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-Q 191 + L+ +D + + RN AI LL GLRIS+ L + ++ + I Q Sbjct: 203 KILSAID--------RSNALGKRNYAIFLLLARMGLRISDVRGLMFHHFDWSRNVISIVQ 254 Query: 192 GKGDKIRIVPLLPSVRKAILEY------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245 K K +P++ V AI++Y + CP L + F G L + Q+ Sbjct: 255 QKTKKPVDLPIMDEVGWAIIDYLRNGRPHSECP--LVFIKHIAPFDG-----LTSALHQQ 307 Query: 246 YIRQLRRY-LGLPLSTT--AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 ++ LRR + +P + H+LRHS AT LL +++I LGH + +T Y VN Sbjct: 308 MLQYLRRADIHVPANKPRGVHSLRHSLATTLLQKQVPIQTISHTLGHLDIGSTSGYVQVN 367 >gi|153805890|ref|ZP_01958558.1| hypothetical protein BACCAC_00130 [Bacteroides caccae ATCC 43185] gi|149130567|gb|EDM21773.1| hypothetical protein BACCAC_00130 [Bacteroides caccae ATCC 43185] Length = 267 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 22/154 (14%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR------IVPLLPSVRKAIL 211 A ++ LY CGL + LT +N+ L+ + K ++PL S+ I Sbjct: 115 AFIFCLY-CGLCFCDVKDLTYKNVDYANRLLKFEQSKTKGYSASSGVVIPLNDSLLSIIG 173 Query: 212 EYYDLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 E P D N L LP + + +++ + G+ + H RHSFA Sbjct: 174 E----APVDKNCLIFDLPTYESC----------CKSVKRWVKRAGIDKHISWHCARHSFA 219 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 ++L+NG +++++ S+LGH L T+ YT K Sbjct: 220 VNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 253 >gi|237718481|ref|ZP_04548962.1| site-specific recombinase [Bacteroides sp. 2_2_4] gi|229452188|gb|EEO57979.1| site-specific recombinase [Bacteroides sp. 2_2_4] Length = 406 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 16/166 (9%) Query: 143 LHTSHETKWIDARNSAILYLLYGC---GLRISEALSLTPQNIMD----DQSTLRIQGKGD 195 LH E K+ R + + C GL ++ L P++I + + + K + Sbjct: 232 LHIIMEKKFKIPRLEIVRDIFVFCCLSGLAFTDIKHLRPEHITKGPNGENWIRKPREKTN 291 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 + +PLL + I+E Y P + N+ LP+ P N + Y++++ G Sbjct: 292 NMCHIPLL-DIPALIVEKYKNNPICVQKNMVLPV-------PCN-QLMNSYLKEIADMCG 342 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T H RH+FA L+N + +I +LGH + TT+IY V Sbjct: 343 ITKKLTTHVGRHTFACIALANKVSMETIARMLGHSDIRTTKIYAKV 388 >gi|229065294|ref|ZP_04200573.1| Tyrosine recombinase [Bacillus cereus AH603] gi|228715944|gb|EEL67681.1| Tyrosine recombinase [Bacillus cereus AH603] Length = 357 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 68/304 (22%), Positives = 125/304 (41%), Gaps = 42/304 (13%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK---------RRTQKIGD 85 TL +Y D R F +L +E+ I + I+ +S++++ K + Q + + Sbjct: 43 TLLNYVYDFRVFFNWLL--SEQIIEFKPIKDISFSDLENLKKKDVENFMRFLKLQQNMQN 100 Query: 86 RSLKRSLSGIKSFLKYL------------------KKRKITTESNILNMRNLKKSNSLPR 127 S+ R +S +KS KYL K +I + LN R + + + Sbjct: 101 SSVNRKISALKSLFKYLTSLSENDDGECYFYRNVMAKIEIHKDKETLNARAKRMRSKIFH 160 Query: 128 ALNEKQALTLV--DNVLLHTSHETKWI---DARNSAILYLLYGCGLRISEALSLTPQNIM 182 ++++ L + ++ T H+ + R+ AIL L G G+R+SE L ++I Sbjct: 161 NDDDQEFLNYIKYEHEKSLTKHQLFYFLRDKDRDVAILSLFLGSGIRVSELADLRMEDIN 220 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-----NIQLPLFRGIRGKP 237 + + + KG+K V + P + Y ++ L N+ L ++ +P Sbjct: 221 LKERLIDVIRKGNKEDSVWITPIALNDLENYMEIRDKKYALGKELKNVFLSKYKHT-AQP 279 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L+ Q + + + G +S H LRH+ A L D + LGH T + Sbjct: 280 LSVRAIQDIVEKYTKAYGKRMS--PHKLRHTLANKLYMEEKDSLQVMQQLGHTSQDTALL 337 Query: 298 YTNV 301 YT + Sbjct: 338 YTQL 341 >gi|167951297|ref|ZP_02538371.1| Site-specific recombinase XerD [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 286 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 79/179 (44%), Gaps = 24/179 (13%) Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIM---DDQST----LRIQGKGDKIRIVPLL 203 ++ R++AIL + GCGLR+S L +++ DD+ +R++ KGD R VP Sbjct: 18 FLGVRDAAILSVFIGCGLRLSGVCRLNESDLVWAADDRGMERLIIRVREKGDHQRFVPAP 77 Query: 204 PSVR---KAILEYYDLCPFDLNL-NIQLPLFRGIRGKPLNPGVFQRYIRQL--------- 250 R +A L + +L D L + LF + P + R++ Sbjct: 78 HETRLLIRAYLGHEELARIDRMLPDGDQVLFVSTKDMKTPPHEYYGEARRISTRSVGEMV 137 Query: 251 RRY---LGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 +Y G+P H LRH + T L + L IQ+++GH TT+ Y +V N Sbjct: 138 EKYGDQAGIPRDQCHPHALRHLYGTELTEDDVQLLKIQALMGHKDPKTTKDYVHVARAN 196 >gi|265753987|ref|ZP_06089342.1| site-specific recombinase [Bacteroides sp. 3_1_33FAA] gi|333029237|ref|ZP_08457298.1| integrase family protein [Bacteroides coprosuis DSM 18011] gi|263235701|gb|EEZ21225.1| site-specific recombinase [Bacteroides sp. 3_1_33FAA] gi|332739834|gb|EGJ70316.1| integrase family protein [Bacteroides coprosuis DSM 18011] Length = 420 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/147 (23%), Positives = 68/147 (46%), Gaps = 21/147 (14%) Query: 160 LYLLYGC--GLRISEALSLTPQNIMDDQST---LRIQGKGDKIRIVPLLPSVRKAILEYY 214 L + C GLRIS+ +L NIM ++ T + +Q K ++ VP+ + + Sbjct: 239 LAFGFACLTGLRISDIRALRWSNIMRNEVTNTLVIVQKKTKELNAVPICSTAEAWMPPKK 298 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 D F LP + ++++ + +G+ + + HT RH+F T + Sbjct: 299 DDKVF------HLPAHANVDAA----------LKRIAKKVGITKTISFHTSRHTFGTLIQ 342 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV 301 + GD+ + + ++GH L +T +Y +V Sbjct: 343 AATGDIETTKKLMGHKSLKSTAVYADV 369 >gi|253565735|ref|ZP_04843190.1| transposase [Bacteroides sp. 3_2_5] gi|251946014|gb|EES86421.1| transposase [Bacteroides sp. 3_2_5] Length = 217 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 70/151 (46%), Gaps = 20/151 (13%) Query: 162 LLYGC--GLRISEALSLTPQNIM-DDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYD 215 L+ C G ++A+S+T +N+ DD+ +L ++ K D + V LLP I +Y D Sbjct: 61 FLFACYTGTAYADAVSITRKNLFRDDEGSLWLKYQRKKTDYLGRVKLLPEAVALIEKYRD 120 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274 + + LF P + + ++ LR GL H RHSFA+ + L Sbjct: 121 --------DTRETLF-----PPQDYHTLRANMKSLRLMAGLSQDLVYHMGRHSFASLVTL 167 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 G + +I +LGH + TTQIY V K Sbjct: 168 EEGVPIETICKMLGHSNIKTTQIYARVTPKK 198 >gi|282852244|ref|ZP_06261596.1| site-specific tyrosine recombinase XerS [Lactobacillus gasseri 224-1] gi|282556663|gb|EFB62273.1| site-specific tyrosine recombinase XerS [Lactobacillus gasseri 224-1] Length = 346 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 74/158 (46%), Gaps = 12/158 (7%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNI-MDDQ--STLRIQGKGDKIRI----VPLLPSVR 207 R+ AI+ L+ G G+R+SE + + +NI + D+ +R G+ D + I +P L + Sbjct: 189 RDIAIIALILGTGIRVSECVGVNVRNINLKDEMLDVVRKGGQKDSVPIADWTIPYLKKYQ 248 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 K + Y D+ L + G + + + ++ + + G PL T H LRH Sbjct: 249 KIRTDRYHANKNDIAF--FLTRWHG-KTRRMTANAVEKMVNKYSAAFGKPL--TPHKLRH 303 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + A+ L D + LG + T +YT+V+ KN Sbjct: 304 TLASELYEVTKDQVLVAQQLGQKGTTATDLYTHVDQKN 341 >gi|239621712|ref|ZP_04664743.1| phage family integrase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515587|gb|EEQ55454.1| phage family integrase [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 309 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 75/155 (48%), Gaps = 19/155 (12%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEY 213 ++ L+ GLR SEAL LTP + TL + + +P SVRK L++ Sbjct: 142 LILLVAKTGLRFSEALGLTPDDFDFVHQTLSVNKTWNYKNGGGFVPTKNASSVRKVQLDW 201 Query: 214 YDLCPFDL---NLNIQLPLFRGIRGKPLNP---GVFQRYIRQLRRYLGLPLSTTAHTLRH 267 + + +L P+F + GK N G+ R+ +Q G+P+ + H LRH Sbjct: 202 QLIMQLSVLLKSLPGDKPIF--VDGKVYNSTANGILARHCKQA----GVPV-ISIHGLRH 254 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNV 301 + A+ LL G + S+ LGH ++TTQ IY +V Sbjct: 255 THASLLLFAGVSIASVSKRLGHASMNTTQEIYLHV 289 >gi|238788398|ref|ZP_04632192.1| Integrase [Yersinia frederiksenii ATCC 33641] gi|238723644|gb|EEQ15290.1| Integrase [Yersinia frederiksenii ATCC 33641] Length = 334 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 27/155 (17%) Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 + ++ L G R SEA SLT +M + T + KG + R +P Sbjct: 195 ATVVRLCLATGARWSEAESLTHTQVMPYKVTY-TKTKGKRNRSIP--------------- 238 Query: 217 CPFDLNLNIQLPLFRGIRGKP--LNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHL 273 I LF + K L P + + L+R + LP +H LRH+FA+H Sbjct: 239 --------ISEELFNSLPKKNGRLFPSCYAAFRTALKRTNIKLPDRQCSHVLRHTFASHF 290 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 + GG++ +Q ILGH + T Y + ++ D Sbjct: 291 MMKGGNILVLQRILGHTDIKMTMRYAHFAPEHLDD 325 >gi|325300611|ref|YP_004260528.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324320164|gb|ADY38055.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 410 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 40/71 (56%) Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 Y++++ G+ T H RH+FAT +LS G + S+ +LGH + TTQIY + +K Sbjct: 326 YLKEIADLCGIKKRLTYHLARHTFATMMLSKGVPVESVSKMLGHANIKTTQIYARITNKK 385 Query: 306 GGDWMMEIYDQ 316 MM + ++ Sbjct: 386 IEHDMMNLSEK 396 >gi|317505556|ref|ZP_07963469.1| integrase [Prevotella salivae DSM 15606] gi|315663327|gb|EFV03081.1| integrase [Prevotella salivae DSM 15606] Length = 406 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 77/324 (23%), Positives = 141/324 (43%), Gaps = 63/324 (19%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLSYTEIRAFISKRRT 80 + + I+R L L++Y+ L L Y ++K + I QL T I F Sbjct: 123 ERIGIDRALKTFKLRTYQ------LSLLREYVQKKHKVSDIPLSQLDNTFIEGF----EY 172 Query: 81 QKIGDRSLKRS-----LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 DR LKRS +S +++ ++ K+ + L + ++ PR++ +++ Sbjct: 173 YLTIDRRLKRSSISSTVSTLQTIVRMAVKKGVLDFYPFLGY-SYERPKGEPRSITKEELE 231 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGK 193 +++ + +W + R L++ + C GL IS+ +L +NI+ ++ L I+G+ Sbjct: 232 RIIE-------LKIEWENYRIVRDLFV-FSCFTGLAISDVRNLREENIVLEEGELCIKGR 283 Query: 194 GDKIRI---VPLLPSVRKAILEYY---------DLCPFDLNLNIQLPLFRGIRGKPLNPG 241 K + V +LP AI+E Y D+ D+ LN Sbjct: 284 RMKTKTPYRVQVLPPAW-AIMERYRGKRAGFVFDVPTTDIILN----------------- 325 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTN 300 + ++R +G+ T H RH+FA+ + LS G + ++ +LGH L TTQ+Y Sbjct: 326 ----GMHHIQRNIGMESPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAA 381 Query: 301 VNSKNGGDWMMEIYDQTHPSITQK 324 V+S+ M I + + T K Sbjct: 382 VSSERIHRDMQAIQQRIQDTFTLK 405 >gi|58000293|ref|YP_190186.1| resolvase [Escherichia coli] gi|47716807|gb|AAT37583.1| resolvase [Escherichia coli] Length = 260 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 81/180 (45%), Gaps = 36/180 (20%) Query: 153 DARNSAILYLLYGCGLRISEALSLT-------PQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 D +L L+ G RI+EAL+LT P +TL+ Q R LP+ Sbjct: 57 DLHRKMLLATLWNTGARINEALALTRGDFSLAPPYPFVQLATLK-QRAEKAARTAGRLPA 115 Query: 206 VRKAILEYYDLCPFD----------LNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRY 253 +A + L P + +++PL R + G+ +++ R +R + Sbjct: 116 GSQA----HRLVPLSDSQYVNQLEMMVATLKIPLERRNKRTGRTEKARIWEVTDRTVRTW 171 Query: 254 L----------GLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 L G+ S T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 172 LNEAVENAAADGVSFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSVSSTEVYTKV 231 >gi|296165947|ref|ZP_06848413.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898700|gb|EFG78240.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 349 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 71/311 (22%), Positives = 127/311 (40%), Gaps = 32/311 (10%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 N N RG S T+++Y D FL ++ + + + + + RR Sbjct: 23 NAFLNHLAGRGFSAATVRAYAFDVANLSRFL---VQQAVGLAAVDAPLVFDWIDWQGVRR 79 Query: 80 TQKI--GDRS--------LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 T + G RS + R ++ +++ +YL + T++ + + R + R L Sbjct: 80 TDQPTGGHRSSTPPAASTVNRRVAAVRALFEYLVMTGVCTDNPVPSPRRGQGLRQSQRGL 139 Query: 130 -------NEKQALTLVDNV-LLHTSHETKWIDA--------RNSAILYLLYGCGLRISEA 173 + LV L S T +DA R+ A++ ++ GLR +EA Sbjct: 140 LGHLGPGRARSGGRLVRQPQRLPESLSTNDVDAFLATLATHRDRAMVLVMLLGGLRSAEA 199 Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRG 232 L ++ + LR+ GKG K R VP+ + + Y P L + RG Sbjct: 200 RGLLLADVDMGRRRLRVIGKGGKERHVPVDAAFFTELAAYLRWERPPGLATPQCFVVLRG 259 Query: 233 -IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291 G P++ + R+ R G H LRH++ T L + G DL ++++++GH Sbjct: 260 PTTGAPVSEAGLRSLFRRHRETSGA-TRVRPHRLRHTYGTELSAAGIDLLALRALMGHVS 318 Query: 292 LSTTQIYTNVN 302 TT Y +++ Sbjct: 319 PETTARYVHLS 329 >gi|118465318|ref|YP_880052.1| site-specific recombinase, phage integrase family protein [Mycobacterium avium 104] gi|118166605|gb|ABK67502.1| site-specific recombinase, phage integrase family protein [Mycobacterium avium 104] Length = 160 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 9/150 (6%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R ++ L GLR++E + ++I + + + GKG + +PL + A L Sbjct: 4 RTRVMILLAALGGLRVAEISRVRGEDIDIAKPAIHVVGKGKRSAWLPLHVLLVDAALTMP 63 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 + N + P G ++ I R G+ T H LRH + T LL Sbjct: 64 TRGWW-FPANSRRP------GDHVHSKSVSDIIGNAMRRAGV--RGTPHGLRHWYGTTLL 114 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 +G DLR++Q +L H LSTTQIYT V + Sbjct: 115 DDGADLRTVQELLRHRSLSTTQIYTRVTDE 144 >gi|317488602|ref|ZP_07947146.1| phage integrase [Eggerthella sp. 1_3_56FAA] gi|325832826|ref|ZP_08165557.1| integrase/recombinase, phage integrase family protein [Eggerthella sp. HGA1] gi|316912296|gb|EFV33861.1| phage integrase [Eggerthella sp. 1_3_56FAA] gi|325485824|gb|EGC88286.1| integrase/recombinase, phage integrase family protein [Eggerthella sp. HGA1] Length = 266 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 14/173 (8%) Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILY------LLYGCGLRISEALSLTPQNIMDDQS 186 Q +DNV+ +ET LY L G RISE LT +++ Sbjct: 83 QQKPFLDNVISQDEYETLRDGLLEDGDLYWHFVVRFLACTGARISELRRLTVESVR--VG 140 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP-GVFQR 245 L + KG+K+R + + S+++ L ++ C +F G G P++ G+ Sbjct: 141 HLDLISKGEKLRRIYIPKSLQQDALLWFKQCSLGEGF-----VFVGPNGNPMSTRGLSLG 195 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 R +RY P H+ RH FA + ++ D+ + ++GH + TT+IY Sbjct: 196 LKRCAKRYGVNPDVVYPHSFRHRFAKNFIAKNPDIAFLADLMGHESIETTRIY 248 >gi|262381977|ref|ZP_06075115.1| integrase/site-specific recombinase [Bacteroides sp. 2_1_33B] gi|301310515|ref|ZP_07216454.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] gi|262297154|gb|EEY85084.1| integrase/site-specific recombinase [Bacteroides sp. 2_1_33B] gi|300832089|gb|EFK62720.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] Length = 310 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 24/122 (19%) Query: 181 IMDDQSTLRIQGKGDKIR----IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 I++ T+ + G+K+R + P L R+ EY L LFR Sbjct: 181 ILETAETMYKELSGEKVRDSGYLFPFLSGTREGREEY---------LEYNAALFR----- 226 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 F R ++ L+ + G+ T++T+RHSFA L + I +LGH + TTQ Sbjct: 227 ------FNRNLKALKEFAGITSDVTSYTIRHSFAMTLKEQNVPIEMISELLGHKSIKTTQ 280 Query: 297 IY 298 IY Sbjct: 281 IY 282 >gi|238760589|ref|ZP_04621720.1| Integrase [Yersinia aldovae ATCC 35236] gi|238701208|gb|EEP93794.1| Integrase [Yersinia aldovae ATCC 35236] Length = 345 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 23/143 (16%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 I+ + G R SEA L +M ++ T I K K R VP+ + K I + Sbjct: 202 IVRICLATGARWSEAEQLRQAQVMPNKITY-INTKSKKNRTVPISTELHKLIPK------ 254 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNG 277 I+G+ L + + + + R L LP H LRH+FA+H + NG Sbjct: 255 --------------IKGR-LFGNAYDAFGQAIDRAKLVLPTGQLTHVLRHTFASHFMMNG 299 Query: 278 GDLRSIQSILGHFRLSTTQIYTN 300 G++ +Q ILGH + T Y++ Sbjct: 300 GNILVLQQILGHSTIQMTMRYSH 322 >gi|313157316|gb|EFR56741.1| site-specific recombinase, phage integrase family [Alistipes sp. HGB5] Length = 409 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 2/64 (3%) Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV-NSK 304 +R + R GL + T H RH+FAT + L+ G L ++ +LGH R++TTQIY + N K Sbjct: 330 LRHVARLAGLSFNPTMHMARHTFATTVTLAQGVPLETVSKMLGHKRITTTQIYAQITNDK 389 Query: 305 NGGD 308 G D Sbjct: 390 IGRD 393 >gi|303236281|ref|ZP_07322874.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302483493|gb|EFL46495.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 171 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 28/167 (16%) Query: 148 ETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI---VPL 202 E +W + R L++ + C GL IS+ +L +NI+ ++ L I+G+ K + V + Sbjct: 2 EIEWENYRIVRDLFV-FSCFTGLAISDVRNLREENIVTEEGKLCIKGRRMKTKTPYRVQV 60 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL----NPGVFQRYIRQLRRYLGLPL 258 LP + Y RGIR + + + ++R +G+ Sbjct: 61 LPPALTIMNRY-----------------RGIRAGFVFDVPTTDIILNGMHHIQRNIGMET 103 Query: 259 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 T H RH+FA+ + LS G + ++ +LGH L TTQ+Y V+S+ Sbjct: 104 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSE 150 >gi|301308313|ref|ZP_07214267.1| mobilizable transposon, int protein [Bacteroides sp. 20_3] gi|300833783|gb|EFK64399.1| mobilizable transposon, int protein [Bacteroides sp. 20_3] Length = 118 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 2/57 (3%) Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 R+I +L P+ T HT RH+FAT +L+ G DL ++ +LGH + TTQIY + Sbjct: 47 RFIFTCPLFLAQPI--TFHTSRHTFATMMLTLGADLYTVSKLLGHANVKTTQIYAKI 101 >gi|258512500|ref|YP_003185934.1| integrase family protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479226|gb|ACV59545.1| integrase family protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 350 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 10/167 (5%) Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL---RIQGKGDKIR 198 LL + +W++ R+ AI L+ GLRI EAL +++ + L + KG K R Sbjct: 151 LLAVFDKRQWVEFRDLAITVLVLDTGLRIREALLAKVEDLDLREGALWVPPVHAKGGKGR 210 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLP-LFRGIRGK--PLNPGVFQRYIRQLRRYLG 255 V + R+ + E+ L + ++ P ++ + G PL+ + + + Q G Sbjct: 211 TVYFGQATRELLSEW--LRKRGVGSDLLFPSVYLDVSGAYHPLSRHAYWKRLAQYAERAG 268 Query: 256 LPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +P H LRH+FA L+ +GGDL ++ +GH TT+ Y V Sbjct: 269 VP-HIHPHQLRHTFAIQFLVRSGGDLVTLARQMGHSSTRTTERYLAV 314 >gi|13475045|ref|NP_106608.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|14025795|dbj|BAB52394.1| integrase/recombinase [Mesorhizobium loti MAFF303099] Length = 358 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 62/245 (25%), Positives = 113/245 (46%), Gaps = 17/245 (6%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 RGL+ T+ + +FL A + Q + L+ + FI ++++ ++L Sbjct: 122 RGLAPATIGQHLGTIEEFLSLSAGPS------QDLSALTSEHVENFIHTL-SRRVLRQTL 174 Query: 89 KRSLSGIKSFLKYLKKR-KITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 + ++ +++FL++ R K ++ + PRAL+ + V LL + Sbjct: 175 QHKVAHLRAFLRFCADRGKAARGLERIDTPRTYRGELPPRALDWE-----VIEKLLSSVA 229 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207 T ++ R+ AIL+L+ GLR SE +LT + + TLR++ + + +V L Sbjct: 230 RTDYLGRRDHAILHLMAYYGLRPSEIAALTLDAVNWKRRTLRVEQRKTRSTLVLPLADQT 289 Query: 208 KAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-STTAHT 264 IL+ Y D P DL N R G + G+ + ++ R+ GLPL +++ Sbjct: 290 LEILDRYIADGRPCDLVTNFLFAKVRSPVGALTSWGICDIFSKRARQS-GLPLDGVSSYA 348 Query: 265 LRHSF 269 LRHSF Sbjct: 349 LRHSF 353 >gi|320527997|ref|ZP_08029163.1| site-specific recombinase, phage integrase family [Solobacterium moorei F0204] gi|320131623|gb|EFW24187.1| site-specific recombinase, phage integrase family [Solobacterium moorei F0204] Length = 223 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 2/144 (1%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 RN +L L G RI + LTP++I Q T + + K K++ + V + EY Sbjct: 60 RNYILLILGVNTGNRIETLIELTPRDIAGGQYTCK-EMKTGKVQQFNMNADVYATVREYI 118 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 + +N I +G +G P+ R I+QL G+ H+LR S+ Sbjct: 119 ERYNIQMNEYI-FESRQGFKGYPITRQQAWRIIKQLADEAGIKYPVACHSLRKSYGRWYW 177 Query: 275 SNGGDLRSIQSILGHFRLSTTQIY 298 + DL + Q +L H + T +Y Sbjct: 178 DSTHDLLTTQKLLMHESAAETMLY 201 >gi|270339835|ref|ZP_06006154.2| integrase [Prevotella bergensis DSM 17361] gi|270333599|gb|EFA44385.1| integrase [Prevotella bergensis DSM 17361] Length = 470 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 56/223 (25%), Positives = 101/223 (45%), Gaps = 29/223 (13%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 L+ + S LK L KR I + +++ PR + ++ V+ + T +E + Sbjct: 243 LTMLASLLKDLHKRHIIDSYPFIG-HSIRWDVGTPRYITREE----VNKIAALTDNELQG 297 Query: 152 IDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSV 206 + + + L+ C GL ++ LT ++I+ + I+ K + +PLLP Sbjct: 298 YEQMSRDMF--LFSCYTGLSYTDVYHLTAEHIIHESDMDWIRKPRVKTGNVCHIPLLPEA 355 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGV--FQRYIRQLRRYLGLPLST 260 AI+E Y I FR K P+ PG +++++ R G+ + Sbjct: 356 -SAIIERYR--------GIHTRAFRHEPPKGYLLPI-PGCDTLNIHLKKIARLCGIQKTL 405 Query: 261 TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 T H RH+FA+ + LS G + S+ +LGH ++ TTQ+Y + Sbjct: 406 TYHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETS 448 >gi|171741094|ref|ZP_02916901.1| hypothetical protein BIFDEN_00161 [Bifidobacterium dentium ATCC 27678] gi|171276708|gb|EDT44369.1| hypothetical protein BIFDEN_00161 [Bifidobacterium dentium ATCC 27678] Length = 286 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/211 (22%), Positives = 91/211 (43%), Gaps = 30/211 (14%) Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + S+ + + +++ + + ++ S PR E +D + Sbjct: 86 LTSYFDWCVDHDLRSDNPAIGLPHVAGSKPHPRPCPETGIREAMDG-----------LSE 134 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVPLLPSVRKAILE 212 R+ ++ L GLR SE ++ ++++ D + LR+ GKGDK R++PL Sbjct: 135 RDRLMVRLGAELGLRRSEIAKVSGRDVVGPADNALLRVVGKGDKQRLIPL---------- 184 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG--LPLSTTAHTLRHSFA 270 P DL + I+ + + G+ ++ + +G LP S H+LRH A Sbjct: 185 -----PQDLAVRIRQTGDGWLFPSRNDHGISHLTAGRVGKIVGSALPQSYGTHSLRHRAA 239 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T DL ++ ++LGH ++TTQ Y + Sbjct: 240 TQAYLATHDLLAVSTLLGHSSVATTQRYVAM 270 >gi|290474154|ref|YP_003467031.1| fimbriae regulatory protein [Xenorhabdus bovienii SS-2004] gi|289173464|emb|CBJ80243.1| fimbriae regulatory protein [Xenorhabdus bovienii SS-2004] Length = 234 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 67/158 (42%), Gaps = 9/158 (5%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI--------RIVPLLPS 205 ARN ++++ + G R+SE LSL ++ D +LR+Q + R + LL Sbjct: 26 ARNICMMFMGFIHGFRVSELLSLKLSDVDLDSRSLRVQRLKNGFSTIHPMVSREIQLLRQ 85 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 K Y P N + LF G+ ++ + IRQ L + H L Sbjct: 86 WLKGRPNYLPGTP-QANSEVSDWLFLSRSGQRMSRQQVYKIIRQTSLKAKLSICANPHML 144 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 RH+ L NG D R IQ LGH + T YT N+ Sbjct: 145 RHACGYALADNGVDTRLIQDYLGHRNIRHTVRYTASNA 182 >gi|254426111|ref|ZP_05039828.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus sp. PCC 7335] gi|196188534|gb|EDX83499.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus sp. PCC 7335] Length = 352 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 76/299 (25%), Positives = 130/299 (43%), Gaps = 27/299 (9%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 R L++ T + YE RQF + A +++T + I + Y + + ++ + ++ Sbjct: 39 RELAENTRKVYERQLRQFYEW-AQKPWQQVTHRDIDR--YKQHLKALPSKQGGSLSPATI 95 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 +S++ +KSF K+L + + ++ L + LK + P+ L+E + L D + E Sbjct: 96 NQSINSLKSFFKWLTVKDYISRNSTLTIEQLKDAPKPPKDLDEAEVDALFDGLNYRGESE 155 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQG-KGDKIRIVPLLPSV 206 R+ AIL LL GLR E +L NI D D + + G K VPL P Sbjct: 156 V-----RDLAILQLL-SHGLRAGEVSAL---NIEDYDGKRVHVLGAKWGSDGKVPLKPEA 206 Query: 207 RKAILEYYD-LCPFDLNLNIQLPLF----RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 A+ Y L + + PL R RGK L +++L L Sbjct: 207 IMALDSYLGWLVRQGMATTPESPLLVSLSRNSRGKRLGYRGIYDLVKELAAASELE-DVH 265 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGH--FRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 H LRH+ AT L++ G D SIL R+ + +++ + + M E +D+ + Sbjct: 266 PHRLRHTCATSLVAQGMD-----SILAKRLVRIKSDRVFARYSDRALDIKMEEAFDELY 319 >gi|167625964|ref|YP_001676258.1| integrase family protein [Shewanella halifaxensis HAW-EB4] gi|167355986|gb|ABZ78599.1| integrase family protein [Shewanella halifaxensis HAW-EB4] Length = 313 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 79/180 (43%), Gaps = 19/180 (10%) Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 +AL+ L+ L H I R+ IL L GLR E +LT +I D+ Sbjct: 112 KALSSNSVGELITTCYLDKRH----IGKRDCCILALFLSTGLRRFELANLTVSDIHLDKR 167 Query: 187 TLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLC-------PFDLNLNIQLPLFRGIRGKPL 238 TL ++ GKG K R P P+ L Y D P DL I + + RG Sbjct: 168 TLTVKSGKGKKPRKQPF-PT---WALTYIDSWLRVRTYQPGDLFNPIWNNVIKHDRGLSC 223 Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 ++Q I + R ++ + H LR +F T LL+ DL + + GH ++TTQIY Sbjct: 224 -AALYQ--IVKARTLEATGITISPHDLRRTFITELLNQKVDLSTASKLAGHANVTTTQIY 280 >gi|329922311|ref|ZP_08277988.1| putative site-specific tyrosine recombinase XerS [Paenibacillus sp. HGF5] gi|328942174|gb|EGG38445.1| putative site-specific tyrosine recombinase XerS [Paenibacillus sp. HGF5] Length = 360 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 123/290 (42%), Gaps = 54/290 (18%) Query: 58 ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLK------------KR 105 + ++T+R S T R +++ RR ++ R LS ++S YL KR Sbjct: 70 LELETLRMDSITGYRLYLTTRREGTNSRITVSRKLSSLRSLFHYLSQIAEDEDFYPLLKR 129 Query: 106 KITTESNILNMRNLKKSNS-LPRALNEKQAL----TLVDNVLLHT---------SHETKW 151 I + I + K + + L + E++ L T + H +HE Sbjct: 130 NIMAKVEIKRIHKPKDTAAKLKGKILEEEELQDFITYIHEGYGHDVEKNKQALYAHEQNK 189 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG--DKIRIVPL-LPSVRK 208 + R++ I L+ GLR+SE ++L +I + L + KG D+ P+ + K Sbjct: 190 V--RDACIASLILNSGLRVSEVVNLNLADIDLNNKMLHVYRKGNNDETFKTPVYFRAQAK 247 Query: 209 AILEYYDLCPFDLNL---NIQLP-----LFRGIR-----GKPLNPGVFQRYIRQLRRYLG 255 LE+Y L L ++P LF +R G+ + Q I + + G Sbjct: 248 DDLEHY------LQLRQTRYKVPKKEKALFVALRNGQNEGQRMTKRAIQAMIIKYAKRFG 301 Query: 256 LPLSTTAHTLRHSFAT-HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 P S T H LRHSFAT + L N D+ + LGH TT++Y ++ K Sbjct: 302 KP-SLTVHKLRHSFATDYYLQN--DIYKTKEQLGHASTETTEVYAHLTDK 348 >gi|317502577|ref|ZP_07960699.1| integrase [Prevotella salivae DSM 15606] gi|315666304|gb|EFV05849.1| integrase [Prevotella salivae DSM 15606] Length = 410 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 14/147 (9%) Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 ++ C GL + +L P NI +DD+ + + + + LL + ++I+ Y Sbjct: 249 FIFSCFTGLAYIDVSNLRPDNIVTLDDKQWIMTKRQKTSVETNVLLLDIPRSIIAKYSHK 308 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 + LF + + N Y++++ G+ + T H RH+FAT LS G Sbjct: 309 TYR-----DGKLFPILTNQKTNA-----YLKEIADLCGVKKNLTFHLARHTFATMSLSKG 358 Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSK 304 + S+ +LGH + TTQIY + +K Sbjct: 359 VPMESVSKMLGHTNIKTTQIYARITNK 385 >gi|311110709|ref|ZP_07712106.1| site-specific recombinase, phage integrase family [Lactobacillus gasseri MV-22] gi|311065863|gb|EFQ46203.1| site-specific recombinase, phage integrase family [Lactobacillus gasseri MV-22] Length = 343 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 12/166 (7%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNI-MDDQ--STLRIQGKGDKIRI----VPLLPSVR 207 R+ AI+ L+ G G+R+SE + + +NI + D+ +R G+ D + I +P L + Sbjct: 176 RDIAIIALILGTGIRVSECVGVNVRNINLKDEMLDVVRKGGQKDSVPIADWTIPYLKKYQ 235 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 K + Y D+ L + G + + + ++ + + G PL T H LRH Sbjct: 236 KIRTDRYHANKNDIAF--FLTRWHG-KTRRMTANAVEKMVNKYSAAFGKPL--TPHKLRH 290 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 + A+ L D + LG + T +YT+V+ K D + +I Sbjct: 291 TLASELYEVTKDQVLVAQQLGQKGTTATDLYTHVDQKKQKDALNKI 336 >gi|307566491|ref|ZP_07628922.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307344802|gb|EFN90208.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 456 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 56/223 (25%), Positives = 101/223 (45%), Gaps = 29/223 (13%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 L+ + S LK L KR I + +++ PR + ++ V+ + T +E + Sbjct: 229 LTMLASLLKDLHKRHIIDSYPFIG-HSIRWDVGTPRYITREE----VNKIAALTDNELQG 283 Query: 152 IDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSV 206 + + + L+ C GL ++ LT ++I+ + I+ K + +PLLP Sbjct: 284 YEQVSRDMF--LFSCYTGLSYTDVYHLTAEHIIHESDMDWIRKPRVKTGNVCHIPLLPEA 341 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGV--FQRYIRQLRRYLGLPLST 260 AI+E Y I FR K P+ PG +++++ R G+ + Sbjct: 342 -SAIIERYK--------GIHTRAFRHEPPKGYLLPI-PGCDTLNIHLKKIARLCGIQKTL 391 Query: 261 TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 T H RH+FA+ + LS G + S+ +LGH ++ TTQ+Y + Sbjct: 392 TYHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETS 434 >gi|218688736|ref|YP_002396948.1| Integrase [Escherichia coli ED1a] gi|218426300|emb|CAR07125.1| Integrase [Escherichia coli ED1a] Length = 335 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 95/223 (42%), Gaps = 44/223 (19%) Query: 87 SLKRSLSGIKS-FLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 S+ R L + + F + E+ + +R LK N+ L++ + +D +L Sbjct: 127 SVNRDLCALSAMFTSLIDAEVFHNENPVRGIRKLKVRNTEMAFLSDDE----IDRLL--- 179 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 E DAR A+L L G R EA L ++I+ ++ + K K R VP+ + Sbjct: 180 --ERLEGDARRVAVLCL--STGARWGEAAGLRGEHIVGNR-VMFFNTKNGKSRAVPVSDT 234 Query: 206 V------RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 V RK L Y Q R F+ +++++ LP Sbjct: 235 VLSLIKTRKTGLLY------------QADYIR-----------FRDILQEVKP--DLPKG 269 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 H +RH+FATH + NGG++ ++Q ILGH + T Y + + Sbjct: 270 QATHVMRHTFATHFMMNGGNIVTLQRILGHTTIQQTMTYAHFS 312 >gi|170717887|ref|YP_001784941.1| phage integrase family protein [Haemophilus somnus 2336] gi|168826016|gb|ACA31387.1| phage integrase family protein [Haemophilus somnus 2336] Length = 308 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 83/178 (46%), Gaps = 19/178 (10%) Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 + LN+ + TL+ L+ + E W + L+ G+R SEAL+LTP++ Sbjct: 116 KYLNQFELHTLITQ--LNLTKEINW-----DWFILLIAKTGMRFSEALALTPKDFDFSHQ 168 Query: 187 TLRIQG-----KGDKIRIVPLLPSVRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPL 238 TL I G + SVRK L++ + F N + P+F +R K Sbjct: 169 TLTINKTWNYKDGGGFQPTKNRSSVRKIPLDWQTIIQFAELIKNKPEEQPIF--VRKKIF 226 Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 N V IR+ ++ +P+ + H LRH+ A+ LL G + S+ LGH ++TTQ Sbjct: 227 NSTVNNILIRRCKK-ANIPI-ISLHGLRHTHASLLLFAGVSIASVARRLGHSNMTTTQ 282 >gi|206976186|ref|ZP_03237095.1| transposition regulatory protein TnpA [Bacillus cereus H3081.97] gi|206745640|gb|EDZ57038.1| transposition regulatory protein TnpA [Bacillus cereus H3081.97] Length = 371 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 55/218 (25%), Positives = 101/218 (46%), Gaps = 31/218 (14%) Query: 93 SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152 S K FL ++ + K +I N+ +K+ R L ++Q V VL T+ Sbjct: 143 SRYKGFLHHVTQDK----PSIRNILKIKEPRKKVRTLTKEQ----VQQVLNTTT------ 188 Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGKGD-----KIRIVPLLP 204 + R++ ++ LL+ GLRI E LSL ++ + D + +R+ +G+ K++ Sbjct: 189 NIRDTFLIQLLFETGLRIGEVLSLFIEDFIFDHTKGHRIRLVNRGELENGAKLKTGEREI 248 Query: 205 SVRKAILEYYD------LCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLP 257 V +++++ YD + D++ N RG GKP+ ++L++ GL Sbjct: 249 FVSQSLMDLYDDYLYEIIDELDVHTNFLFIKLRGENTGKPMTYSDVGSLFKRLKKKTGLN 308 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 L H RH+ AT +++ +Q LGH ++ TT Sbjct: 309 LH--PHLFRHTHATIYYQKTKNIKQVQERLGHSQIQTT 344 >gi|324006765|gb|EGB75984.1| site-specific recombinase, phage integrase family [Escherichia coli MS 57-2] Length = 326 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 22/149 (14%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212 D R A+L L G R E +L + + + T ++ K K R VP+ + K I Sbjct: 180 DDRRVALLCL--STGARWGEGSTLRGEQVNHGRVTF-LKTKNGKKRTVPISEELEKEI-- 234 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 + PLF+ ++ F +RQ++ LP H LRH+FA+ Sbjct: 235 ---------KTSDTGPLFK------VDYENFCERLRQVKP--DLPRGQATHVLRHTFASW 277 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + NGG++ ++Q ILGH + T +Y ++ Sbjct: 278 FMMNGGNIIALQQILGHASIQQTMVYAHL 306 >gi|322688285|ref|YP_004208019.1| phage integrase [Bifidobacterium longum subsp. infantis 157F] gi|320459621|dbj|BAJ70241.1| phage integrase [Bifidobacterium longum subsp. infantis 157F] Length = 353 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 70/301 (23%), Positives = 118/301 (39%), Gaps = 31/301 (10%) Query: 19 QNWLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 ++WL + L RG S T+++Y ++ +L + + + ++ Sbjct: 21 RDWLHHWLPKVRGSSPKTVEAYRIGLESYVRWLETTEGTQRSHIGFGHFDRARLGRWVEW 80 Query: 78 RRTQK-IGDRSLKRSLSGIKSFLKY--LKKRKITTESNILNMRNLKKSNSLP-RALNEKQ 133 RT++ DR++ ++ ++ FL + L+ +T N +K P L E+ Sbjct: 81 MRTERGYSDRTIMLRMTTMRVFLDHAGLEHPALTALGNDAAGIRVKPPARKPVDHLGEEH 140 Query: 134 ALTLVDNVLLHTSHETKWI--DA---RNSAILYLLYGCGLRISEALSLTPQNI-MDDQST 187 L+ T W DA RN +L L+Y RI E +LT ++ MD + Sbjct: 141 TKALL----------TAWGTGDAKSRRNRMLLILMYDTAARIGELAALTIADVGMDKPAR 190 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 + + GK K R+VPL R + Y + P + PLF R + P R Sbjct: 191 VTLTGKRGKSRVVPLGERTRTHLAAYLEEFHPGPSMRDGDRPLFHSTRNGAIQPLSVDRI 250 Query: 247 IRQLRRYLG---------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L+ +P H +R + A L G L I +LGH +STT Sbjct: 251 DEILKTAAARARRGTCPSMPERVHCHLIRRTRAMDLYQQGVPLPLIMQLLGHESMSTTSA 310 Query: 298 Y 298 + Sbjct: 311 F 311 >gi|268526582|gb|ACZ05623.1| Int2 [Serratia proteamaculans] Length = 236 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 71/169 (42%), Gaps = 25/169 (14%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-------STLRIQGKGDKIRIVPLLPS 205 D R + L+ G RI+EAL++TP++I+ D TL+ + R P + Sbjct: 45 DLRRRMLFDFLWNTGARINEALAVTPKDIVLDAVKPFVVLRTLKQRNHTAGRRGRPGKDT 104 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------- 258 K L D F L L F KP V++ R +L L Sbjct: 105 PVKRTLPLLDPS-FARRLRDHLATFTRYVTKP----VWEISDDTARNWLKEALGNAQRNG 159 Query: 259 ------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 S T HT RHSFA HLL N + +QS +GH +T+IYT V Sbjct: 160 MHFSIESITPHTFRHSFAMHLLYNRVHPKILQSFMGHRDYKSTEIYTRV 208 >gi|160886644|ref|ZP_02067647.1| hypothetical protein BACOVA_04656 [Bacteroides ovatus ATCC 8483] gi|156107055|gb|EDO08800.1| hypothetical protein BACOVA_04656 [Bacteroides ovatus ATCC 8483] Length = 409 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 93/192 (48%), Gaps = 26/192 (13%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLT 177 KK+ + PRAL+ +++ + +V + ++ + AR+ L+GC G+ ++ +S+T Sbjct: 217 KKTETTPRALS-RESFEKIRDVEIPAYRKSHML-ARD----MFLFGCYTGVSYADVVSIT 270 Query: 178 PQNIMDDQST---LRIQGKGDKIRI-VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233 N+ D L+ + K +++R V LLP I +Y + PL R Sbjct: 271 HANLQTDGDGALWLKYRRKKNELRASVKLLPEAIALINKYSSE-----DRETLFPLLRW- 324 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRL 292 P + +R+++ L G+ H RHSFA+ + L G + +I +LGH + Sbjct: 325 ------PNL-RRHMKALAALAGIKDDLCYHQARHSFASLITLEAGVPIETISRMLGHSDI 377 Query: 293 STTQIYTNVNSK 304 STTQ+Y V+ K Sbjct: 378 STTQVYARVSPK 389 >gi|11967381|gb|AAG42074.1|AF288684_1 integrase-like protein [Enterococcus faecium] Length = 278 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 9/146 (6%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 ++ + G G+R+SE +T + ++ + ++GK R V L +R +L+Y Sbjct: 127 VMLTICGTGIRVSELQHITVEAAQTGRAEICMKGKN---RTVLLQKELRVRLLKYAKELG 183 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNG 277 D + +FR GKPL+ +++L + P H LRH FA + Sbjct: 184 ID-----EGHIFRTRSGKPLDRTNICHDMKKLCASAKVDPRKVFPHNLRHLFARSFYAIE 238 Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNS 303 +L + ILGH R+ TT+IY ++ Sbjct: 239 KNLAHLADILGHSRIETTRIYVAASA 264 >gi|317504686|ref|ZP_07962650.1| integrase [Prevotella salivae DSM 15606] gi|315664190|gb|EFV03893.1| integrase [Prevotella salivae DSM 15606] Length = 409 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/198 (24%), Positives = 87/198 (43%), Gaps = 34/198 (17%) Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISE 172 N++ + LP+AL+ + L++ +H + + +A ++ C G + Sbjct: 212 NVKIARGDKKLPKALDRRSLDKLMN------THFGELEEEMETARDLFVFACHTGAAYCD 265 Query: 173 ALSLTPQNIM-DDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLP 228 + L+ +++ DD+ L ++ KI + + LLP + I +Y Sbjct: 266 LMGLSKTHLVRDDEENLWMKFNRKKIGVLCRIKLLPEAIRIIEKY--------------- 310 Query: 229 LFRGIRGKPLNP----GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSI 283 RG + L P +Q Y++ LR G+ T HT RH+FAT + L G + ++ Sbjct: 311 --RGEERERLLPQMKYATYQSYLKALRLREGIAFPFTTHTARHTFATLITLEQGVPIETV 368 Query: 284 QSILGHFRLSTTQIYTNV 301 ILGH +S T+ Y V Sbjct: 369 SKILGHSNVSMTERYAKV 386 >gi|162958004|ref|YP_001621436.1| Int2 [Serratia entomophila] gi|155382591|gb|ABU23786.1| Int2 [Serratia entomophila] Length = 236 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 71/169 (42%), Gaps = 25/169 (14%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQ-------STLRIQGKGDKIRIVPLLPS 205 D R + L+ G RI+EAL++TP++I+ D TL+ + R P + Sbjct: 45 DLRRRMLFDFLWNTGARINEALAVTPKDIVLDAVKPFVVLRTLKQRNHTAGRRGRPGKDT 104 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL------- 258 K L D F L L F KP V++ R +L L Sbjct: 105 PVKRTLPLLDPS-FARRLRDHLATFTRYVTKP----VWEISDDTARNWLKEALGHAQRNG 159 Query: 259 ------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 S T HT RHSFA HLL N + +QS +GH +T+IYT V Sbjct: 160 MHFSIESITPHTFRHSFAMHLLYNRVHPKILQSFMGHRDYKSTEIYTRV 208 >gi|220905498|ref|YP_002480810.1| integrase family protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869797|gb|ACL50132.1| integrase family protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 340 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 26/128 (20%) Query: 171 SEALSLTPQNIMDDQSTLRIQGKGDK--IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP 228 SE SL Q++ D + +R++G K RI+PL P + +L+ D+ Q P Sbjct: 201 SELFSLCWQDVDFDNNFIRVRGTKTKGSDRIIPLTPEFKARLLDKRDVA--------QSP 252 Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-------HTLRHSFATHLLSNGGDLR 281 + G R I+ RR L + +RH FA+ +L+NGGDL+ Sbjct: 253 YIIEVNG---------RGIQHCRRAFKTALEKAKIDYPVRLYDIRHLFASTMLANGGDLK 303 Query: 282 SIQSILGH 289 ++ +LGH Sbjct: 304 AVSKLLGH 311 >gi|150004015|ref|YP_001298759.1| putative integrase [Bacteroides vulgatus ATCC 8482] gi|149932439|gb|ABR39137.1| putative integrase [Bacteroides vulgatus ATCC 8482] Length = 200 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 26/151 (17%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR------IVPLLPSVRKAIL 211 A ++ LY CGLR LT +N+ L+ + K ++PL + I Sbjct: 48 AFIFCLY-CGLRFCNVKDLTFKNVDYANRLLKFEQSKAKEHSASSGVVIPLNDGLLSIIG 106 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL---GLPLSTTAHTLRHS 268 E P D N I + ++ + ++R++ G+ + H RHS Sbjct: 107 EA----PTDKNCLI------------FDLSTYESCCKSVKRWVKRAGIDKHISWHLARHS 150 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 FA ++L+NG +++++ S+LGH L T+ YT Sbjct: 151 FAVNILNNGANIKTVASLLGHSGLKHTEKYT 181 >gi|85707318|ref|ZP_01038402.1| probable site-specific integrase/recombinase [Roseovarius sp. 217] gi|85707509|ref|ZP_01038585.1| probable site-specific integrase/recombinase [Roseovarius sp. 217] gi|85667966|gb|EAQ22851.1| probable site-specific integrase/recombinase [Roseovarius sp. 217] gi|85668199|gb|EAQ23076.1| probable site-specific integrase/recombinase [Roseovarius sp. 217] Length = 363 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 78/315 (24%), Positives = 127/315 (40%), Gaps = 65/315 (20%) Query: 12 FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71 + +L E ++W+ RG+ TL +Y+ + L E S I Sbjct: 73 WPILGEFRDWMLR---NRGVLDSTLDTYQNILVHMFLVLGDAPE---------AYSAHAI 120 Query: 72 RAFISKRRTQKIGDRSLKRSLSGIKSFLKYL---KKRKITTESNILNMRNLKKSNSLPRA 128 R F+ R G + +++ ++FL++L + + I N + + +P Sbjct: 121 REFVLGRAGMH-GVAHARITVTATRAFLRFLIATGRCPAGRDQAIPNFAGWQLA-PVPDF 178 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 LN+ T + ++ S E + R+ A++ L GLR SE +L +I D Sbjct: 179 LND----TDITRIVAACSGEAR---LRDRAVILFLVRLGLRASEVANLEFDHI--DWRNG 229 Query: 189 RIQGKGDKIR---IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP--LNPGVF 243 RI +G K R +PL V +A+L Y D RG+P P VF Sbjct: 230 RIAIRGGKSRREEWLPLPQEVGEALLAYLD------------------RGRPSFATPRVF 271 Query: 244 ---QRYIRQLRRYLGLPLSTTA-------------HTLRHSFATHLLSNGGDLRSIQSIL 287 + +R + R+ L A H LRHS AT +L +G +L + ++L Sbjct: 272 VTAKNPMRPMSRFAVNCLVQAALDRAGIQSGRRGSHLLRHSAATAMLRHGVNLAGVGAVL 331 Query: 288 GHFRLSTTQIYTNVN 302 H LSTT Y V+ Sbjct: 332 RHRSLSTTMQYAKVD 346 >gi|256851408|ref|ZP_05556797.1| Lj965 prophage integrase [Lactobacillus jensenii 27-2-CHN] gi|260660829|ref|ZP_05861744.1| Lj965 prophage integrase [Lactobacillus jensenii 115-3-CHN] gi|282933142|ref|ZP_06338529.1| prophage integrase [Lactobacillus jensenii 208-1] gi|256616470|gb|EEU21658.1| Lj965 prophage integrase [Lactobacillus jensenii 27-2-CHN] gi|260548551|gb|EEX24526.1| Lj965 prophage integrase [Lactobacillus jensenii 115-3-CHN] gi|281302646|gb|EFA94861.1| prophage integrase [Lactobacillus jensenii 208-1] Length = 375 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 79/169 (46%), Gaps = 36/169 (21%) Query: 162 LLYGCGLRISEALSLTPQNI------MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215 LL GLR SEAL+LT +I +D TL + G +K+++ P P + +I + Sbjct: 205 LLASTGLRKSEALALTWSDIDFINGVIDVNKTLAV-GLDNKVQVQP--PKSKSSIRQ--- 258 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLS-------------- 259 P NL L ++ K L+ VF Y +YL L P+ Sbjct: 259 -VPISANLANVLNEYKN-SEKILSAKVFHTYTG---KYLSLSKPMKWLEAIYNKAPKDLK 313 Query: 260 -TTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTT-QIYTNVNSKN 305 T H RH+FAT L+S +++Q +LGH + T IYT++N+KN Sbjct: 314 HITVHGFRHTFATLLISETNVKPKTVQMLLGHSNIQMTLDIYTHINNKN 362 >gi|154267925|gb|ABS72060.1| integrase-like protein [Ruminococcus gauvreauii] Length = 278 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 9/146 (6%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 ++ + G G+R+SE +T + ++ + ++GK R V L +R +L+Y Sbjct: 127 VMLTICGTGIRVSELQHITVEAAQTGRAEICMKGKN---RTVLLQKELRVRLLKYAKELG 183 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNG 277 D + +FR GKPL+ +++L + P H LRH FA + Sbjct: 184 ID-----EGHIFRTRSGKPLDRTNICHDMKKLCASAKVDPRKVFPHNLRHLFARSFYAIE 238 Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNS 303 +L + ILGH R+ TT+IY ++ Sbjct: 239 KNLAHLADILGHSRIETTRIYVAASA 264 >gi|120401497|ref|YP_951326.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] gi|120406881|ref|YP_956710.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] gi|145221183|ref|YP_001131861.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK] gi|315441527|ref|YP_004074404.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] gi|119954315|gb|ABM11320.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] gi|119959699|gb|ABM16704.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] gi|145213669|gb|ABP43073.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK] gi|315265182|gb|ADU01923.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] Length = 355 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 17/163 (10%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQ-GK-----GDKIRIVPLLP 204 AR+ A+ LY GLR E+ L ++ D+ L ++ GK G + R VP+L Sbjct: 172 ARDYAMFRTLYHAGLRSEESALLEIPDVHFDRGPFGKLHVRFGKAAHMSGPRPRWVPMLD 231 Query: 205 SVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-- 260 + +L+++ D+ P N + LF G L+ G + +R L G P + Sbjct: 232 GL-DVLLQWFLADVRPKFPNSPV---LFADESGGALHRGTIRNRLRYLMELEGRPATERF 287 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 + H LR + ATH G DL +IQ +LGH+ +S+T Y ++ Sbjct: 288 SPHALRRACATHNYERGVDLVAIQQLLGHWTVSSTMRYVRPSA 330 >gi|189402582|ref|ZP_02783408.2| resolvase [Escherichia coli O157:H7 str. EC4401] gi|189354779|gb|EDU73198.1| resolvase [Escherichia coli O157:H7 str. EC4401] Length = 229 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/180 (25%), Positives = 80/180 (44%), Gaps = 36/180 (20%) Query: 153 DARNSAILYLLYGCGLRISEALSLT-------PQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 D +L L+ G RI+EAL+LT P +TL+ Q R +P+ Sbjct: 26 DLHRKMLLATLWNTGARINEALALTRGDFSLAPPYPFVQLATLK-QRTEKAARTAGRMPA 84 Query: 206 VRKAILEYYDLCPFD----------LNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRY 253 ++ + L P + +++P+ R + G+ +++ R +R + Sbjct: 85 GQQT----HRLVPLSDAWFVSQLQTMVATLKIPMERRNKRTGRTEKARIWEVTDRTVRTW 140 Query: 254 LG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +G + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 141 IGQAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 200 >gi|312889681|ref|ZP_07749229.1| integrase family protein [Mucilaginibacter paludis DSM 18603] gi|311297801|gb|EFQ74922.1| integrase family protein [Mucilaginibacter paludis DSM 18603] Length = 413 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 54/193 (27%), Positives = 79/193 (40%), Gaps = 17/193 (8%) Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSH-ETKWIDARNSAILYLLYGC-GLRISEALSLTP 178 K +P N K+AL + L+T+ E + + Y C G+ + L Sbjct: 203 KKYKIPTGQNIKKALDKSELKTLYTAKLEPGSFKEKARDFWFFSYQCNGMNFRDITELKY 262 Query: 179 QNIMDD------QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232 ++I TL K IVPL ++ KA++E Y P L N P+ Sbjct: 263 KDINKKSFSFLRHKTLHTTKDKPKPIIVPLTETI-KAMIERYGTKP-ALPDNYVFPILDK 320 Query: 233 IRGKPLNPGVFQRYIR-------QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285 + V Q +IR +L + LGL + + RH+F T + NG + IQ Sbjct: 321 SMDEKEKMRVNQNFIRFVNQHIQKLAKDLGLDTDISTYYARHTFTTTAIRNGAKMELIQE 380 Query: 286 ILGHFRLSTTQIY 298 LGH LSTTQ Y Sbjct: 381 SLGHHSLSTTQNY 393 >gi|283455528|ref|YP_003360092.1| phage integrase [Bifidobacterium dentium Bd1] gi|283102162|gb|ADB09268.1| Phage integrase [Bifidobacterium dentium Bd1] Length = 244 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/209 (22%), Positives = 90/209 (43%), Gaps = 30/209 (14%) Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + S+ + + +++ + + ++ S PR E +D + Sbjct: 44 LTSYFDWCVDHDLRSDNPAIGLPHVAGSKPHPRPCPETGIREAMDG-----------LSE 92 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVPLLPSVRKAILE 212 R+ ++ L GLR SE ++ ++++ D + LR+ GKGDK R++PL Sbjct: 93 RDRLMVRLGAELGLRRSEIAKVSGRDVVGPADNALLRVVGKGDKQRLIPL---------- 142 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG--LPLSTTAHTLRHSFA 270 P DL + I+ + + G+ ++ + +G LP S H+LRH A Sbjct: 143 -----PQDLAVRIRQTGDGWLFPSRNDHGISHLTAGRVGKIVGSALPQSYGTHSLRHRAA 197 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYT 299 T DL ++ ++LGH ++TTQ Y Sbjct: 198 TQAYLATHDLLAVSTLLGHSSVATTQRYV 226 >gi|315646660|ref|ZP_07899777.1| site-specific tyrosine recombinase XerS [Paenibacillus vortex V453] gi|315277986|gb|EFU41307.1| site-specific tyrosine recombinase XerS [Paenibacillus vortex V453] Length = 360 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 71/288 (24%), Positives = 115/288 (39%), Gaps = 50/288 (17%) Query: 58 ITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117 + ++ +R S T R +++ RR ++ R LS ++S YL + E L R Sbjct: 70 MELEKLRMESITSYRLYLTTRRDGTNSRITVSRKLSSLRSLFHYLSQIAEDEEFYPLLKR 129 Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTS---------HETKWID--------------- 153 N+ + R K + +L HE D Sbjct: 130 NIMAKVEIKRIHKPKDTAAKLKGKILEEEELQDFITYIHEGYGQDVENNKQALYAHELNK 189 Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI--QGKGDKIRIVPL-LPSVRKAI 210 R++ I L+ GLR+SE ++L +I + L + +G D+ P+ + K Sbjct: 190 VRDACIASLILNSGLRVSEVVNLNLADIDLNNKMLHVFRKGNNDETFKTPVYFRAQAKDD 249 Query: 211 LEYYDLCPFDLNL---NIQLP-----LFRGIR-----GKPLNPGVFQRYIRQLRRYLGLP 257 LE+Y L L ++P LF +R G+ + Q I + + G P Sbjct: 250 LEFY------LQLRQTRYKVPKKEKALFVALRNGQHEGQRMTKRAIQAMIIKYAKRFGKP 303 Query: 258 LSTTAHTLRHSFAT-HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 S T H LRHSFAT + L N D+ + LGH TT++Y ++ K Sbjct: 304 -SLTVHKLRHSFATDYYLQN--DIYKTKEQLGHASTETTEVYAHLTDK 348 >gi|125624180|ref|YP_001032663.1| site-specific tyrosine recombinase XerS [Lactococcus lactis subsp. cremoris MG1363] gi|124492988|emb|CAL97951.1| putative tyrosine recombinase [Lactococcus lactis subsp. cremoris MG1363] Length = 357 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 76/323 (23%), Positives = 136/323 (42%), Gaps = 70/323 (21%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQT-IRQLSYTEIRA--------FISKRR----TQ 81 T+ +Y D F IFL + EK+T + +R++ E+ + ++S RR + Sbjct: 37 TIDAYLND---FQIFLKWMINEKLTFGSEMREIKLDELNSLKKRDVENYLSYRRLGLMCK 93 Query: 82 KIGDR-----SLKRSLSGIKSFLKYLKKR------KITTESNILNMRNLKK--------- 121 + D+ ++ R+ + ++S KYL + + E N++ LKK Sbjct: 94 EFSDKQTSQTTVIRNHAALRSLFKYLSEETENEYGDVYLEKNVMRKVKLKKVRDTLNYRA 153 Query: 122 SNSLPRALNEKQALTLVDNV-LLHTSHET----KWI----DARNSAILYLLYGCGLRISE 172 S R L E L++ V + SH T +W R+ AIL L G+R SE Sbjct: 154 SKLKGRLLLENDPHELLNFVEKKYESHTTSDVMRWKFLCNKKRDLAILALFLATGIRKSE 213 Query: 173 ALSLTPQN-IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231 + ++ +++D+ T+ + K K +V + P ++ ++EY L + + Sbjct: 214 LIDTNVEDLVIEDKVTISVYRKEGKFDVVGVAPFAKRYLIEY---------LAQREKVGH 264 Query: 232 GIRGKPLNPGVFQRYIRQLRRY-------------LGLPLSTTAHTLRHSFATHLLSNGG 278 + GK P +Y Q++R + T+H LRHSFAT+L Sbjct: 265 LLEGKE--PLFVTKYSNQIKRISDASVDSVVTKYTAAFNVRATSHDLRHSFATNLYRVSR 322 Query: 279 DLRSIQSILGHFRLSTTQIYTNV 301 + + LGH TT +Y ++ Sbjct: 323 SSGVVATQLGHNSTMTTDLYVHL 345 >gi|299146487|ref|ZP_07039555.1| integrase [Bacteroides sp. 3_1_23] gi|298516978|gb|EFI40859.1| integrase [Bacteroides sp. 3_1_23] Length = 409 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 50/149 (33%), Positives = 71/149 (47%), Gaps = 18/149 (12%) Query: 166 CGLRISEALSLTPQNIMDD-QSTLRIQGKGDKIRI---VPLLPSVRKAILEYYDLCPFDL 221 CGL S+ +L +NI L I K K VPLL + K IL+ Y D Sbjct: 253 CGLAYSDVANLRQENIQKSFDGNLWIITKRQKTNTDVNVPLL-DIPKMILKKYKGKLPDG 311 Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDL 280 + LP+ I + LN Y++++ G+ + T H RH+FAT LS G + Sbjct: 312 KI---LPV---ISNQKLNA-----YLKEIADICGIKKNLTFHLARHTFATTTTLSKGVPI 360 Query: 281 RSIQSILGHFRLSTTQIYTNV-NSKNGGD 308 ++ +LGH + TTQIY + NSK G D Sbjct: 361 ETVSKMLGHTNIETTQIYARITNSKIGSD 389 >gi|293400410|ref|ZP_06644556.1| recombinase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306810|gb|EFE48053.1| recombinase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 375 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 28/153 (18%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG----KGDKIRIVPLLPSVRKAILEYY 214 IL ++Y G R+SE + +++ D L I+G + K R+VP+ ++ +L YY Sbjct: 226 ILIMIY-TGFRVSELFQIKTKDV--DLQNLTIRGGNKTEAGKNRVVPIHERIQDYVLNYY 282 Query: 215 DL------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 ++ C + I +R F + + L ++ H RH+ Sbjct: 283 NMGNEYLICDLETGAKINYHAYRN--------NYFDKIMNML------DMNHLPHDCRHT 328 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTN 300 FAT L + G + SI+ ++GH +TT+ IYT+ Sbjct: 329 FATRLSNFGANATSIKRLIGHTSYATTEKIYTH 361 >gi|167762500|ref|ZP_02434627.1| hypothetical protein BACSTE_00855 [Bacteroides stercoris ATCC 43183] gi|167699606|gb|EDS16185.1| hypothetical protein BACSTE_00855 [Bacteroides stercoris ATCC 43183] Length = 409 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 91/192 (47%), Gaps = 26/192 (13%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLT 177 K++ P+AL+ +++ + +V + H T AR+ L+ C G+ S+A+++T Sbjct: 217 KQTVKTPKALS-RESFEKIRDVEI-APHRTTHRLARD----LFLFACYTGVAYSDAVTVT 270 Query: 178 PQNIM---DDQSTLRIQGKGDKIRI-VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233 +N+ D + L+ + K +++R V LLP I +Y+D L I P R Sbjct: 271 RENLYTGEDGKLWLKYRRKKNELRASVKLLPEAVALIEKYHDDSRDTLFPMIHYPSMRN- 329 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRL 292 +++ L G+ + H RHSFA+ + L G + +I S+LGH + Sbjct: 330 ------------HMKALAVLAGIKENLCYHVGRHSFASLVTLEAGVPIETISSMLGHSNI 377 Query: 293 STTQIYTNVNSK 304 TTQ+Y V K Sbjct: 378 QTTQVYARVTPK 389 >gi|190404489|ref|YP_001961120.1| rcorf145 [Agrobacterium rhizogenes] gi|158322285|gb|ABW33702.1| rcorf145 [Agrobacterium rhizogenes] Length = 413 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 68/302 (22%), Positives = 119/302 (39%), Gaps = 61/302 (20%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR-QLSYTEIRAFISKRRTQKIGDR 86 ERGL+ T+ SY+ + +FL + T + Y E A + K Sbjct: 130 ERGLAASTVGSYKLLSLRFLREVCPAGANGFAALTPEIVIGYVERHALDGSADSGK---- 185 Query: 87 SLKRSLSGI-KSFLKYLKKRKITTES---NILNMRNLKKSNSLPRALNEKQALTLVDNVL 142 ++ G+ ++ L+YL + + + + ++R + + LP L ++ ++D Sbjct: 186 ----AMCGVVRALLRYLHLKGFISTALADCVPSIRRWRLAG-LPTFLPPEKVQKVLD--- 237 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202 T + R+ A+L +L GLR SE +L +I T+ + GKG + +PL Sbjct: 238 --ACDRTTAMGHRDYAVLMILAKLGLRASEVATLNLDDIDWQSGTILVHGKGRRQATMPL 295 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTT 261 V AI+ Y IR G+P + + ++R L ++G Sbjct: 296 RHDVGTAIVAY-------------------IRHGRPAS-ACRRVFLRTLAPHVGFASGCA 335 Query: 262 ---------------------AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 AH RHS AT LL +G I +L H + +T+IY Sbjct: 336 ITMIAKQALERAGIDGYAHHGAHLFRHSLATDLLRSGASFAEIGQLLRHRSIDSTRIYAK 395 Query: 301 VN 302 ++ Sbjct: 396 LD 397 >gi|146300455|ref|YP_001195046.1| phage integrase family protein [Flavobacterium johnsoniae UW101] gi|146154873|gb|ABQ05727.1| phage integrase family protein [Flavobacterium johnsoniae UW101] Length = 386 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 36/150 (24%) Query: 166 CGLRISEALSLTPQNIM---DDQSTLRI-QGKGDKIRIVPLLPSVRKAILE--------- 212 GLR S+ LT + IM DD +R Q K + ++ +P+ + + E Sbjct: 244 TGLRYSDIAKLTWEEIMFIEDDGYYIRFKQKKTEGLQTIPISNEAYEILAEKAQPVKTGK 303 Query: 213 -YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 ++DL +D++ + + + R G+ T H RH++AT Sbjct: 304 VFFDLKKWDVDRALPVWIARA----------------------GIVKHITFHCFRHTYAT 341 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +++G D+ ++ ++GH + TTQIYT + Sbjct: 342 LQIASGTDIFTVSKMMGHKSIKTTQIYTKI 371 >gi|295097795|emb|CBK86885.1| Site-specific recombinase XerD [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 258 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|239637254|ref|ZP_04678242.1| integrase [Staphylococcus warneri L37603] gi|239597210|gb|EEQ79719.1| integrase [Staphylococcus warneri L37603] Length = 407 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 51/208 (24%), Positives = 85/208 (40%), Gaps = 32/208 (15%) Query: 132 KQALTLVDNVLLHTSHETKWIDARN----SAILYLLYGCGLRISEALSLTPQNIMDDQST 187 K+ L D ++ H H ++ RN AI+ G+RI E L++ +NI + T Sbjct: 193 KELLNCFDYLIKHKKHSSR---KRNYQMVKAIVQFQVANGMRIGELLAIKRENINYEDKT 249 Query: 188 LRIQGKGDKI--------------------RIVPLLPS----VRKAILEYYDLCPFDLNL 223 L I G + + R + L ++ ILE ++ Sbjct: 250 LDIDGTINWVTDKETGAFGVKETTKTSKSYRTIGLTTQSINLLKTLILENKKENQWNDKF 309 Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283 + +F G P++ I++ + S T HTLRH+ + L G +L++I Sbjct: 310 IDRGYIFTNTAGSPIDLNKINNIIKEATEISSIKKSVTTHTLRHTHISTLAQLGINLKAI 369 Query: 284 QSILGHFRLSTT-QIYTNVNSKNGGDWM 310 Q +GH TT +IYT+V + D M Sbjct: 370 QERVGHSDYKTTLEIYTHVTDQMAKDMM 397 >gi|29350025|ref|NP_813528.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|29341937|gb|AAO79722.1| integrase [Bacteroides thetaiotaomicron VPI-5482] Length = 420 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 22/47 (46%), Positives = 33/47 (70%) Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G+ T H RHS+A+ LL NG D+ +I+S++GH + TTQIYT++ Sbjct: 355 GIKKHITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHI 401 >gi|53712631|ref|YP_098623.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|52215496|dbj|BAD48089.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] Length = 409 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 50/149 (33%), Positives = 71/149 (47%), Gaps = 18/149 (12%) Query: 166 CGLRISEALSLTPQNIMDD-QSTLRIQGKGDKIRI---VPLLPSVRKAILEYYDLCPFDL 221 CGL S+ +L +NI L I K K VPLL + K IL+ Y D Sbjct: 253 CGLAYSDVANLRQENIQKSFDGNLWIITKRQKTNTDVNVPLL-DIPKMILKKYKGKLPDG 311 Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDL 280 + LP+ I + LN Y++++ G+ + T H RH+FAT LS G + Sbjct: 312 KI---LPV---ISNQKLNA-----YLKEIADICGIKKNLTFHLARHTFATTTTLSKGVPI 360 Query: 281 RSIQSILGHFRLSTTQIYTNV-NSKNGGD 308 ++ +LGH + TTQIY + NSK G D Sbjct: 361 ETVSKMLGHTNIETTQIYARITNSKIGSD 389 >gi|307564607|ref|ZP_07627144.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307346692|gb|EFN91992.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 417 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 100/223 (44%), Gaps = 29/223 (13%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 L+ + S LK L KR I + +++ PR + ++ V+ + T +E + Sbjct: 190 LTMLASLLKDLHKRHIIDPYPFIG-HSIRWDVGTPRYITREE----VNKIAALTDNELQ- 243 Query: 152 IDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSV 206 D + L+ C GL ++ LT ++I+ + I+ K + +PLLP Sbjct: 244 -DYEQVSRDMFLFSCYTGLSYTDVYHLTAEHIIHESDMDWIRKPRVKTGNVCHIPLLPEA 302 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGV--FQRYIRQLRRYLGLPLST 260 AI+E Y I FR K P+ PG +++++ R G+ + Sbjct: 303 -SAIIERYR--------GIHTRAFRHEPPKGYLLPI-PGCDTLNIHLKKIARLCGIQKTL 352 Query: 261 TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 T H RH+FA+ + LS G + S+ +LGH ++ TTQ+Y + Sbjct: 353 TYHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETS 395 >gi|62860892|gb|AAY16485.1| site-specific recombinase [Bifidobacterium breve] Length = 229 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 62/141 (43%), Gaps = 31/141 (21%) Query: 166 CGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL 223 CGLR E + +++M D +L + GKGDK RIVP+ + I + C Sbjct: 93 CGLRRLEIAKVHSRDVMRDLVGWSLVVVGKGDKQRIVPIGDDLALLIRSAHGYC------ 146 Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST------TAHTLRHSFATHLLSNG 277 PG + R++ Y+G LST TAH+LRH +AT + Sbjct: 147 ---------------FPGRWSRHVES--SYIGRRLSTLLGDGWTAHSLRHRYATTTYAAT 189 Query: 278 GDLRSIQSILGHFRLSTTQIY 298 D + +LGH + TTQ Y Sbjct: 190 RDPLLVSKLLGHASVETTQRY 210 >gi|300070957|gb|ADJ60357.1| site-specific tyrosine recombinase XerS [Lactococcus lactis subsp. cremoris NZ9000] Length = 351 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 76/323 (23%), Positives = 136/323 (42%), Gaps = 70/323 (21%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQT-IRQLSYTEIRA--------FISKRR----TQ 81 T+ +Y D F IFL + EK+T + +R++ E+ + ++S RR + Sbjct: 31 TIDAYLND---FQIFLKWMINEKLTFGSEMREIKLDELNSLKKRDVENYLSYRRLGLMCK 87 Query: 82 KIGDR-----SLKRSLSGIKSFLKYLKKR------KITTESNILNMRNLKK--------- 121 + D+ ++ R+ + ++S KYL + + E N++ LKK Sbjct: 88 EFSDKQTSQTTVIRNHAALRSLFKYLSEETENEYGDVYLEKNVMRKVKLKKVRDTLNYRA 147 Query: 122 SNSLPRALNEKQALTLVDNV-LLHTSHET----KWI----DARNSAILYLLYGCGLRISE 172 S R L E L++ V + SH T +W R+ AIL L G+R SE Sbjct: 148 SKLKGRLLLENDPHELLNFVEKKYESHTTSDVMRWKFLCNKKRDLAILALFLATGIRKSE 207 Query: 173 ALSLTPQN-IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231 + ++ +++D+ T+ + K K +V + P ++ ++EY L + + Sbjct: 208 LIDTNVEDLVIEDKVTISVYRKEGKFDVVGVAPFAKRYLIEY---------LAQREKVGH 258 Query: 232 GIRGKPLNPGVFQRYIRQLRRY-------------LGLPLSTTAHTLRHSFATHLLSNGG 278 + GK P +Y Q++R + T+H LRHSFAT+L Sbjct: 259 LLEGKE--PLFVTKYSNQIKRISDASVDSVVTKYTAAFNVRATSHDLRHSFATNLYRVSR 316 Query: 279 DLRSIQSILGHFRLSTTQIYTNV 301 + + LGH TT +Y ++ Sbjct: 317 SSGVVATQLGHNSTMTTDLYVHL 339 >gi|295087488|emb|CBK69011.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 409 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 50/149 (33%), Positives = 71/149 (47%), Gaps = 18/149 (12%) Query: 166 CGLRISEALSLTPQNIMDD-QSTLRIQGKGDKIRI---VPLLPSVRKAILEYYDLCPFDL 221 CGL S+ +L +NI L I K K VPLL + K IL+ Y D Sbjct: 253 CGLAYSDVANLRQENIQKSFDGNLWIITKRQKTNTDVNVPLL-DIPKMILKKYKGKLPDG 311 Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDL 280 + LP+ I + LN Y++++ G+ + T H RH+FAT LS G + Sbjct: 312 KI---LPV---ISNQKLNA-----YLKEIADICGIKKNLTFHLARHTFATTTTLSKGVPI 360 Query: 281 RSIQSILGHFRLSTTQIYTNV-NSKNGGD 308 ++ +LGH + TTQIY + NSK G D Sbjct: 361 ETVSKMLGHTNIETTQIYARITNSKIGSD 389 >gi|288817618|ref|YP_003431965.1| phage integrase [Hydrogenobacter thermophilus TK-6] gi|288787017|dbj|BAI68764.1| phage integrase [Hydrogenobacter thermophilus TK-6] gi|308751216|gb|ADO44699.1| integrase family protein [Hydrogenobacter thermophilus TK-6] Length = 288 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 59/239 (24%), Positives = 101/239 (42%), Gaps = 50/239 (20%) Query: 80 TQKIGDRSLKRSLSGIKSFLK------YLKKRKITTESNILNM------RNLKKSNSLPR 127 T + S+ LS IK F K Y+ K K + ++++ RN+ K P+ Sbjct: 56 TSSLNTSSILTHLSAIKHFYKFAFRRGYVDKEKYSDIESVIDEVREDLGRNIAKR--YPK 113 Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 AL E++ ++ V A+ I L G+R+SE LSL + D+S Sbjct: 114 ALTEEEINKILSAVK----------GAKYEKIYVLFLYSGIRLSEYLSLRKSDFYQDKSG 163 Query: 188 L---RIQG---KGDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGK 236 L R+ K K R+VP+L S ++ D + ++ N ++ Sbjct: 164 LLWIRLSADITKRRKERLVPVLGSSKEETYAVIDRLLVWIESYEENFRVK---------- 213 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 G Q + +L R L +P S H+ RH++ T+L+++G ++ GH + TT Sbjct: 214 ---RGSLQVFTNRLSRKLCIPFSL--HSFRHTYITNLVNSGFPAEVVKEFAGHSNVRTT 267 >gi|254426076|ref|ZP_05039793.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus sp. PCC 7335] gi|196188499|gb|EDX83464.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus sp. PCC 7335] Length = 326 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 76/299 (25%), Positives = 128/299 (42%), Gaps = 27/299 (9%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 R L++ T + YE RQF ++ +++T + I + Y + + +R + ++ Sbjct: 39 RELAENTRKVYERQLRQFYEWVK-KPWQQVTHRDIDR--YKQHLKALPSKRGGSLSPATI 95 Query: 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHE 148 +S++ +KSF K+L + + + L + LK + P+ L+E + L D + E Sbjct: 96 NQSINSLKSFFKWLTVKDYISRNPTLTIEQLKDAPKPPKDLDEAEVDALFDGLNYRGESE 155 Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQG-KGDKIRIVPLLPSV 206 R+ AIL LL GLR E +L NI D D + + G K VPL P Sbjct: 156 V-----RDLAILQLL-SHGLRAGEVSAL---NIEDYDGKRVHVLGAKWGSDGKVPLKPEA 206 Query: 207 RKAILEYYD-LCPFDLNLNIQLPLF----RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 A+ Y L + + PL R RGK L +++L L Sbjct: 207 IMALDSYLGWLVRQGMATTPESPLLVSLSRNSRGKRLGYRGIYDLVKELAAASELE-DVH 265 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGH--FRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 H LRH+ AT L++ G D SIL R+ + +++ + M E +D+ + Sbjct: 266 PHRLRHTCATSLVAQGMD-----SILAKRLVRIKSDRVFARYSDHALDMKMEEAFDELY 319 >gi|15609783|ref|NP_217162.1| integrase [Mycobacterium tuberculosis H37Rv] gi|15842187|ref|NP_337224.1| phage integrase family protein [Mycobacterium tuberculosis CDC1551] gi|148662487|ref|YP_001284010.1| phage integrase family protein [Mycobacterium tuberculosis H37Ra] gi|148823839|ref|YP_001288593.1| integrase [Mycobacterium tuberculosis F11] gi|167966927|ref|ZP_02549204.1| hypothetical integrase [Mycobacterium tuberculosis H37Ra] gi|215404613|ref|ZP_03416794.1| integrase [Mycobacterium tuberculosis 02_1987] gi|215412442|ref|ZP_03421188.1| integrase [Mycobacterium tuberculosis 94_M4241A] gi|215446906|ref|ZP_03433658.1| integrase [Mycobacterium tuberculosis T85] gi|253798270|ref|YP_003031271.1| integrase [Mycobacterium tuberculosis KZN 1435] gi|254365312|ref|ZP_04981357.1| hypothetical integrase [Mycobacterium tuberculosis str. Haarlem] gi|254551701|ref|ZP_05142148.1| integrase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289553565|ref|ZP_06442775.1| integrase [Mycobacterium tuberculosis KZN 605] gi|289746449|ref|ZP_06505827.1| integrase [Mycobacterium tuberculosis 02_1987] gi|289758776|ref|ZP_06518154.1| phage integrase [Mycobacterium tuberculosis T85] gi|294994258|ref|ZP_06799949.1| integrase [Mycobacterium tuberculosis 210] gi|297635258|ref|ZP_06953038.1| integrase [Mycobacterium tuberculosis KZN 4207] gi|297732254|ref|ZP_06961372.1| integrase [Mycobacterium tuberculosis KZN R506] gi|298526121|ref|ZP_07013530.1| hypothetical integrase [Mycobacterium tuberculosis 94_M4241A] gi|306785454|ref|ZP_07423776.1| integrase [Mycobacterium tuberculosis SUMu003] gi|307085338|ref|ZP_07494451.1| integrase [Mycobacterium tuberculosis SUMu012] gi|313659587|ref|ZP_07816467.1| integrase [Mycobacterium tuberculosis KZN V2475] gi|1550687|emb|CAB02354.1| PROBABLE INTEGRASE [Mycobacterium tuberculosis H37Rv] gi|13882474|gb|AAK47038.1| phage integrase family protein [Mycobacterium tuberculosis CDC1551] gi|134150825|gb|EBA42870.1| hypothetical integrase [Mycobacterium tuberculosis str. Haarlem] gi|148506639|gb|ABQ74448.1| phage integrase family protein [Mycobacterium tuberculosis H37Ra] gi|148722366|gb|ABR06991.1| hypothetical integrase [Mycobacterium tuberculosis F11] gi|253319773|gb|ACT24376.1| integrase [Mycobacterium tuberculosis KZN 1435] gi|289438197|gb|EFD20690.1| integrase [Mycobacterium tuberculosis KZN 605] gi|289686977|gb|EFD54465.1| integrase [Mycobacterium tuberculosis 02_1987] gi|289714340|gb|EFD78352.1| phage integrase [Mycobacterium tuberculosis T85] gi|298495915|gb|EFI31209.1| hypothetical integrase [Mycobacterium tuberculosis 94_M4241A] gi|308329877|gb|EFP18728.1| integrase [Mycobacterium tuberculosis SUMu003] gi|308365129|gb|EFP53980.1| integrase [Mycobacterium tuberculosis SUMu012] gi|323718760|gb|EGB27919.1| integrase [Mycobacterium tuberculosis CDC1551A] gi|326904260|gb|EGE51193.1| integrase [Mycobacterium tuberculosis W-148] gi|328458042|gb|AEB03465.1| integrase [Mycobacterium tuberculosis KZN 4207] Length = 332 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 62/147 (42%), Gaps = 17/147 (11%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212 D R ++ L GLR +EA ++MD L + GKG K RIVP I + Sbjct: 188 DRRIELMIRLAGEAGLRRAEAAQAHTGDLMDG-GLLLVHGKGGKRRIVP--------ISD 238 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 Y D P G G V + R LP T HTLRH +AT Sbjct: 239 YLAALIRDTPHGYLFP--NGTGGHLTAEHVGKLVSR------ALPGDATMHTLRHRYATR 290 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYT 299 +LR++Q +LGH + TT+ YT Sbjct: 291 AYRGSHNLRAVQQLLGHASIVTTERYT 317 >gi|303236998|ref|ZP_07323571.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302482807|gb|EFL45829.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 417 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 56/223 (25%), Positives = 101/223 (45%), Gaps = 29/223 (13%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 L+ + S LK L KR I + +++ PR + ++ V+ + T +E + Sbjct: 190 LTMLASLLKDLHKRHIIDSYPFIG-HSIRWDVGTPRYITREE----VNKIAALTDNELQG 244 Query: 152 IDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSV 206 + + + L+ C GL ++ LT ++I+ + I+ K + +PLLP Sbjct: 245 YEQMSRDMF--LFSCYTGLSYTDVYHLTAEHIIHESDMDWIRKPRVKTGNVCHIPLLPEA 302 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGV--FQRYIRQLRRYLGLPLST 260 AI+E Y I FR K P+ PG +++++ R G+ + Sbjct: 303 -SAIIERYR--------GIHTRAFRHEPPKGYLLPI-PGCDTLNIHLKKIARLCGIQKTL 352 Query: 261 TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 T H RH+FA+ + LS G + S+ +LGH ++ TTQ+Y + Sbjct: 353 TYHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETS 395 >gi|240143906|ref|ZP_04742507.1| integrase [Roseburia intestinalis L1-82] gi|257204099|gb|EEV02384.1| integrase [Roseburia intestinalis L1-82] Length = 270 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 60/235 (25%), Positives = 101/235 (42%), Gaps = 40/235 (17%) Query: 96 KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN-----------------------EK 132 + F++YL ++IT + +L L++ + P +N + Sbjct: 29 EKFVRYLNGKEITKDRTMLYREKLREEDLSPATINLYVIAVNRYLRYLECGQASIKTLKV 88 Query: 133 QALTLVDNVLLHTSHETKWIDARNSA------ILYLLYGCGLRISEALSLTPQNIMDDQS 186 Q V+NV+ ++ A++S I+ L G+R+SE +T + + + Sbjct: 89 QKKRSVENVISRKEYQELLNYAKSSGRKKYYYIMRTLALTGIRVSELQYITVETL--ETG 146 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQR 245 +++ KG KIR V LP V I E C + N I +FRG G P+N + Sbjct: 147 RVQVYNKG-KIRDV-YLPDV--LIRELKKFCREEKENDGI---IFRGRGGDPINRITVYK 199 Query: 246 YIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 I L +G+ H+ RH FA + G+L + +LGH + TT+IYT Sbjct: 200 MIAYLGDMVGIKKEKVHPHSFRHFFAISYMERYGNLAELADLLGHTSIETTRIYT 254 >gi|150010322|ref|YP_001305065.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503] gi|149938746|gb|ABR45443.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503] Length = 383 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 15/142 (10%) Query: 166 CGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222 CGLR+ + +LT +++ D S R++ K K +PL K + + D D Sbjct: 239 CGLRLGDIQALTWGDVILDGSQYRVKIVMKKTQKTLYLPLSDEALKWMPKRDDAKDTDKI 298 Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282 ++ + + ++ + G+ + T HT RH+FAT +L+ G DL + Sbjct: 299 FHLPYATYINV------------VLKTWAQNSGITKTITFHTARHTFATMMLTLGADLYT 346 Query: 283 IQSILGHFRLSTTQIYTNVNSK 304 +LGH ++ TT IY + K Sbjct: 347 TSKLLGHTQVKTTTIYAKIVDK 368 >gi|238756569|ref|ZP_04617868.1| Integrase [Yersinia ruckeri ATCC 29473] gi|238705195|gb|EEP97613.1| Integrase [Yersinia ruckeri ATCC 29473] Length = 156 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 23/143 (16%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 ++ L G R SEA L+ +M ++ T Q K + R VP+ + YD Sbjct: 15 VVRLCLATGTRWSEAQGLSQSQLMLNRVTF-TQTKSKRNRTVPISKRL-------YD--- 63 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNG 277 +LP RG P+ + + L+R + LP H LRH FA+H + G Sbjct: 64 -------RLPKRRG----PMFSSCYDAFKNALKRAGIELPKGQRTHVLRHRFASHFMMGG 112 Query: 278 GDLRSIQSILGHFRLSTTQIYTN 300 G++ +Q ILGH + T Y++ Sbjct: 113 GNILVLQQILGHSSIVMTMRYSH 135 >gi|188492334|ref|ZP_02999604.1| integrase for prophage CP-933T [Escherichia coli 53638] gi|188487533|gb|EDU62636.1| integrase for prophage CP-933T [Escherichia coli 53638] Length = 341 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 23/144 (15%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 +++ + G R SEA LT ++ + T K K R VP+ +++K Sbjct: 191 SVVRVCLATGARWSEAEKLTQSQVLPGRITF-TNTKSKKNRTVPISDNIQKL-------- 241 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSN 276 LP RG L ++ + L++ + LP H LRH+FA+H + N Sbjct: 242 ---------LPKRRG----RLFSNCYEAFTWALKKAKIELPEGQRTHVLRHTFASHFMMN 288 Query: 277 GGDLRSIQSILGHFRLSTTQIYTN 300 GG++ +Q ILGH + T Y + Sbjct: 289 GGNILVLQQILGHSTILMTMRYAH 312 >gi|160887392|ref|ZP_02068395.1| hypothetical protein BACOVA_05411 [Bacteroides ovatus ATCC 8483] gi|156107803|gb|EDO09548.1| hypothetical protein BACOVA_05411 [Bacteroides ovatus ATCC 8483] Length = 420 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 22/47 (46%), Positives = 33/47 (70%) Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G+ T H RHS+A+ LL NG D+ +I+S++GH + TTQIYT++ Sbjct: 355 GIKKHITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHI 401 >gi|257125977|ref|YP_003164091.1| integrase family protein [Leptotrichia buccalis C-1013-b] gi|257049916|gb|ACV39100.1| integrase family protein [Leptotrichia buccalis C-1013-b] Length = 367 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 50/152 (32%), Positives = 69/152 (45%), Gaps = 23/152 (15%) Query: 159 ILYLLYGCGLRISEALSLTPQNI------MDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212 I +L+ GLRI E L+LT +I +D T+ K D I L SVRK IL Sbjct: 201 IFKILFWTGLRIGEVLALTFDDINLKEKFIDVNKTISHINKKDYITTPKTLGSVRKVIL- 259 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPG--VFQRYIRQLRRYLGLPLSTTA-------H 263 P +L L+++L F + ++ +F QLR Y+ S A H Sbjct: 260 -----PENLILDLKL-YFSKFEKQKISKSERIFNLKKSQLR-YILEKCSIQAEVEKIRLH 312 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 RHS A++LL D+ +I LGH L TT Sbjct: 313 DFRHSHASYLLFIQADITAISKRLGHDNLQTT 344 >gi|116662387|ref|YP_829440.1| phage integrase family protein [Arthrobacter sp. FB24] gi|116613166|gb|ABK05859.1| phage integrase family protein [Arthrobacter sp. FB24] Length = 352 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 37/168 (22%) Query: 167 GLRISEALSLTPQNIMDDQSTLR---------IQGKGDKIRIVPLLPSVRKAILEYYDLC 217 GLRI+E + L ++ D QG+G K R+VP + + I + Sbjct: 170 GLRINETVMLDIRDWRPDLGGFGKLHVRFGKGAQGRGPKPRLVPAINGAAELIDWWLGEV 229 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-----------RRYLGLPLS------- 259 + P G PL P +R+ R+L RR LGL + Sbjct: 230 RHQYGEDWGDP------GAPLLPS--ERFDRELGRCGRVGGNALRRSLGLQVEQWLPAWS 281 Query: 260 --TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 T H LRH A+ L G D++++Q +LGH LSTT Y +V S++ Sbjct: 282 GRMTPHVLRHYCASSLYGAGMDIKALQELLGHQWLSTTSGYIHVRSEH 329 >gi|39653675|ref|NP_945240.1| integrase [Streptococcus phage EJ-1] gi|38638843|emb|CAE82083.1| integrase [Streptococcus phage EJ-1] Length = 380 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 26/163 (15%) Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQG---------KGDKIRIVPL-------LPSV 206 L GC RI EA+ + P N+ + +TL++ G KG+K L + + Sbjct: 205 LNGC--RIGEAVGIEPHNVDYESNTLQLHGTYDHTNGYQKGEKTSPKTLASYRETVMTTR 262 Query: 207 RKAILEYYD-LCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST- 260 K ILE + + + N N + +F G PL F +++ L P+ Sbjct: 263 EKEILEEMEFMNELEKNTNPRYKDMGFIFTTKNGVPLQTNSFNLALKKANERLETPIQKN 322 Query: 261 -TAHTLRHSFATHLLSNGGDLRSIQSILGHFRL-STTQIYTNV 301 T+H RH+ + L N L++I +GH +TTQIYT++ Sbjct: 323 LTSHIFRHTLVSRLAENNVPLKAIMDRVGHSDAKTTTQIYTHI 365 >gi|323692935|ref|ZP_08107157.1| integrase [Clostridium symbiosum WAL-14673] gi|323503018|gb|EGB18858.1| integrase [Clostridium symbiosum WAL-14673] Length = 320 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 14/173 (8%) Query: 133 QALTLVDNVLLHTSHET-KWIDARNSAILY-----LLYGCGLRISEALSLTPQNIMDDQS 186 Q +DNV+ +E K R+ LY + G R+SE + ++I Sbjct: 137 QHKNYLDNVISEADYEYLKNCLLRDEKYLYYFIIRFMAATGARVSEVIQFEAEDIFTGYK 196 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 I KG+K+R + + +++K + + + +F G P+ PG + Sbjct: 197 D--IYSKGNKVRRIYVPKALQKDAIAWLKAIRQERGF-----VFLNRYGNPITPGGIRGQ 249 Query: 247 IRQLR-RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 ++ + Y P H+ RH FA + GD+ + +LGH L TT+IY Sbjct: 250 LKNMALAYWMNPEVVHPHSFRHRFAKSFIEKCGDISLLSDLLGHKNLETTRIY 302 >gi|315501682|ref|YP_004080569.1| integrase family protein [Micromonospora sp. L5] gi|315408301|gb|ADU06418.1| integrase family protein [Micromonospora sp. L5] Length = 424 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 1/70 (1%) Query: 230 FRGIRGKPLNPGVFQRYI-RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288 FR +P+ P F R I ++ + GLP +T H LRH+FA LS GGD+ + +G Sbjct: 321 FRLNWAEPVEPAAFYRNILKKAVQAAGLPEATRLHDLRHTFAALWLSAGGDIHRLSEQMG 380 Query: 289 HFRLSTTQIY 298 H TTQ + Sbjct: 381 HASYETTQKF 390 >gi|255034748|ref|YP_003085369.1| integrase family protein [Dyadobacter fermentans DSM 18053] gi|254947504|gb|ACT92204.1| integrase family protein [Dyadobacter fermentans DSM 18053] Length = 412 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 16/147 (10%) Query: 162 LLYGC--GLRISEALSLTPQNIM----DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215 L+ C GL S+ SL +I DQ + K + +PLLP AI+ Y+ Sbjct: 251 FLFCCYTGLAYSDIQSLERSDIARGIDGDQWIFTHRTKTNVKSHIPLLPEAL-AIIARYN 309 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274 P + + LP+ P N + Y++++ G+ T+H RH+FAT + L Sbjct: 310 DDPACESRGLVLPV-------PSNQKM-NDYLKEIAVVCGIDKILTSHVARHTFATTITL 361 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV 301 NG + S+ +LGH + TTQIY + Sbjct: 362 QNGVPIESVSKMLGHTNIRTTQIYAKI 388 >gi|218263932|ref|ZP_03477873.1| hypothetical protein PRABACTJOHN_03563 [Parabacteroides johnsonii DSM 18315] gi|218222401|gb|EEC95051.1| hypothetical protein PRABACTJOHN_03563 [Parabacteroides johnsonii DSM 18315] Length = 370 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 68/151 (45%), Gaps = 30/151 (19%) Query: 163 LYGC--GLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 L+ C GLRIS+ + L +NI+ D + I K K R +LP +A+ LC Sbjct: 225 LFSCLTGLRISDIIRLQWENIIRGADGGWCMHIVTK--KTRTEAVLPLSDEALA----LC 278 Query: 218 PFDLNLNIQLPLFRGIRG-----KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 G RG K L + Y++ + G+ T H RH++AT Sbjct: 279 --------------GERGEGQVFKGLTKTILPLYLKDWIKSAGIRKHITFHGFRHTYATL 324 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 L+ G DL +I +L H + TTQ+Y +V S Sbjct: 325 QLAAGTDLYTISKMLTHSNVGTTQVYVDVVS 355 >gi|212691118|ref|ZP_03299246.1| hypothetical protein BACDOR_00608 [Bacteroides dorei DSM 17855] gi|212666350|gb|EEB26922.1| hypothetical protein BACDOR_00608 [Bacteroides dorei DSM 17855] Length = 409 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 20/150 (13%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQST---LRIQGKGDKIRI-VPLLPSVRKAILEYYD 215 L+ C G+ S+A+++T +N+ D+ L+ + K +++R V LLP I +Y+D Sbjct: 253 FLFACYTGVAYSDAVTITKENLHTDEDGKLWLKYRRKKNELRASVKLLPEAVDLIEKYHD 312 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274 L I P R +++ L G+ + H RHSFA+ + L Sbjct: 313 DERNTLFPMIHYPSLRN-------------HMKALAVLAGIKENLCYHVGRHSFASLVTL 359 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 G + +I +LGH + TTQ+Y V K Sbjct: 360 EAGVPIETISKMLGHSNIQTTQVYARVTPK 389 >gi|238854984|ref|ZP_04645313.1| site-specific tyrosine recombinase XerS [Lactobacillus jensenii 269-3] gi|260664470|ref|ZP_05865322.1| site-specific tyrosine recombinase XerS [Lactobacillus jensenii SJ-7A-US] gi|282933778|ref|ZP_06339131.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1] gi|313472133|ref|ZP_07812625.1| site-specific recombinase, phage integrase family [Lactobacillus jensenii 1153] gi|238832355|gb|EEQ24663.1| site-specific tyrosine recombinase XerS [Lactobacillus jensenii 269-3] gi|239529502|gb|EEQ68503.1| site-specific recombinase, phage integrase family [Lactobacillus jensenii 1153] gi|260561535|gb|EEX27507.1| site-specific tyrosine recombinase XerS [Lactobacillus jensenii SJ-7A-US] gi|281302080|gb|EFA94329.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1] Length = 351 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/154 (25%), Positives = 69/154 (44%), Gaps = 6/154 (3%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ AI+ L+ G G+R+SE S+ ++ ++TL + KG + +P+ I Y Sbjct: 185 RDIAIIALILGTGVRVSECASINLSDLNLKEATLDLTRKGGQKDSIPVASWTLPYIAAYA 244 Query: 215 DL----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 D+ + N + + + P +R + + + G PL T H LRH+ A Sbjct: 245 DIRNKRYHAEKNDKAFFLTYYHKKTSRITPNGIERLVGKYSKAFGHPL--TPHKLRHTLA 302 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + L D + LG + T +YT+V+ K Sbjct: 303 SELYGVTKDQVLVAQQLGQKGTTATDLYTHVDQK 336 >gi|315607168|ref|ZP_07882172.1| integrase [Prevotella buccae ATCC 33574] gi|315251222|gb|EFU31207.1| integrase [Prevotella buccae ATCC 33574] Length = 448 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 15/158 (9%) Query: 158 AILYLLYGC--GLRISEALSLTPQNI---MDDQSTLRIQGKGDKIR-IVPLLPSVRKAIL 211 A L ++ C GL IS+ +L ++I D+Q +R + + K+ IVPL P + +AI+ Sbjct: 246 ARLMFVFSCFTGLAISDMENLENKHIQTTADEQMYIRKERQKTKVEFIVPLHP-IAEAII 304 Query: 212 EYYDLCPFDLNLNIQLPLFRG-----IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 + C + + + L + + + + V + + + G+ + H R Sbjct: 305 SH---CQKEQERSEEYLLVKEKGDHLVFHRDCSRSVMDAKLSIVGKACGICQRLSFHMAR 361 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 H+F T LS G + SI ++GH +S+TQ+Y V K Sbjct: 362 HTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDK 399 >gi|313158952|gb|EFR58330.1| site-specific recombinase, phage integrase family [Alistipes sp. HGB5] Length = 389 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 17/143 (11%) Query: 167 GLRISEALSLTPQNIMDDQSTLRI-----QGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221 GL ++ + LT +I D + R Q G + R V LLP+ Y D Sbjct: 256 GLSHADVVKLTHADIHTDDNGERWIIDKRQKTGTQFR-VKLLPAAEMLYKRYKDTYRTSE 314 Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDL 280 + PL +G K LN +R + R+ GL + T H RH+FAT + L+ G L Sbjct: 315 KV---FPL-KGTY-KTLNMS-----LRHVARHAGLSFNPTIHMARHTFATTVTLTQGVPL 364 Query: 281 RSIQSILGHFRLSTTQIYTNVNS 303 ++ +LGH R++TTQIY + + Sbjct: 365 ETVCKMLGHKRITTTQIYAKITN 387 >gi|295840975|dbj|BAJ06858.1| integron integrase intI [uncultured bacterium] Length = 278 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 65/250 (26%), Positives = 107/250 (42%), Gaps = 54/250 (21%) Query: 64 RQLSYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNIL-NMRNLKK 121 +++ E+ AF++ K + + ++LS I +L KR + E + L N+ K+ Sbjct: 44 KEMREKEVGAFLTHLAVDKHVSASTQNQALSAIL----FLYKRVLNIELDWLDNVVRAKR 99 Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 LP L + + +++N I N + LLYG G+R+ EAL L Q+I Sbjct: 100 PKHLPVVLTKTEVRNVLEN-----------ITGTNQLVAQLLYGTGMRLMEALRLRVQDI 148 Query: 182 MDDQSTLRIQ-GKGDKIRIV--------PLLPSVRKAILEYY-DLC--------PFDLN- 222 +Q + ++ GKG+K R+ PL + A + Y DL PF L+ Sbjct: 149 DFEQFQIIVRSGKGNKDRVTTLPEALVEPLKKQIAHARIIYQGDLAEGFGRVYLPFALDR 208 Query: 223 ------LNIQLPLFRGIRGKPLNP--GVFQRY----------IRQLRRYLGLPLSTTAHT 264 L + NP + R+ IR R++G+ ++HT Sbjct: 209 KYPNAGLEFGWQYCFPSNNRSTNPRTSLVGRHHLHEKNISGAIRNACRHVGIYKRVSSHT 268 Query: 265 LRHSFATHLL 274 +RH FATHLL Sbjct: 269 MRHCFATHLL 278 >gi|253584229|ref|ZP_04861427.1| site-specific recombinase [Fusobacterium varium ATCC 27725] gi|251834801|gb|EES63364.1| site-specific recombinase [Fusobacterium varium ATCC 27725] Length = 333 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 47/187 (25%), Positives = 83/187 (44%), Gaps = 25/187 (13%) Query: 138 VDNVLLHTSHETKWI----------DARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 +DNVL + + K I D RN ILY L+ G+R E ++L ++I++ + + Sbjct: 128 IDNVLKLSFEDIKKIIGQYKINGEKDYRNVNILYTLFYTGMRSQELINLKFKHILEREGS 187 Query: 188 LRIQ------GKGDKIRIVPLLPSVRKAILEY----YDLCPFDLNLNIQLPLFRGI-RGK 236 I+ G+ + +L K EY Y++ D+ + Q + + Sbjct: 188 YYIKLEETKSGREQYKSVHNILVQRLKEYKEYLQALYNID--DVMIEEQYVFSSSVEKNT 245 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 L+ ++ + + +G +S H +RH+ AT L NG D+ I+ LGH T+ Sbjct: 246 QLSYRALYDLVQNMGKLIGKDIS--PHNVRHAVATELSINGADILEIRDFLGHADTRVTE 303 Query: 297 IYTNVNS 303 +Y N S Sbjct: 304 VYINAKS 310 >gi|225008848|gb|ACN78946.1| IntIA [Vibrio metschnikovii] Length = 87 Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 22/46 (47%), Positives = 32/46 (69%) Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289 QR +++ + + S + HTLRHSFATHLL +G D+R++Q LGH Sbjct: 41 QRTVKRAVKEAEIKKSVSCHTLRHSFATHLLESGADIRTVQEQLGH 86 >gi|78062255|ref|YP_372163.1| Phage integrase [Burkholderia sp. 383] gi|77970140|gb|ABB11519.1| Phage integrase [Burkholderia sp. 383] Length = 420 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 76/192 (39%), Gaps = 34/192 (17%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM-------DDQSTLRIQGKGDKIRIVPLLPSVR 207 R + LLY GLRI+EA T D+ L + GKG + R+VP + Sbjct: 231 RARWLFTLLYLGGLRITEAADTTMGQFFCRRDADGRDRWWLDVTGKGGRQRLVPATDEMM 290 Query: 208 KAILEY-----YDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL--- 258 + Y P D + LP+ G KPL R ++Q+ ++ L Sbjct: 291 AELSRYRRAHGLPALPSDGEPTPLVLPV--GQARKPLTRAALHRIVKQVFQFAADRLRVN 348 Query: 259 ------------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 +AH LRHS +H+ DLR ++ LGH L+TT Y + + Sbjct: 349 GEAGEQQARVLEQASAHWLRHSAGSHMADGHVDLRLVRDNLGHVSLTTTSQYLHADD--- 405 Query: 307 GDWMMEIYDQTH 318 DW ++ H Sbjct: 406 -DWRHRETEEKH 416 >gi|304384215|ref|ZP_07366630.1| integrase [Prevotella marshii DSM 16973] gi|325270615|ref|ZP_08137213.1| integrase [Prevotella multiformis DSM 16608] gi|325853943|ref|ZP_08171459.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|304334716|gb|EFM00994.1| integrase [Prevotella marshii DSM 16973] gi|324987010|gb|EGC18995.1| integrase [Prevotella multiformis DSM 16608] gi|325484280|gb|EGC87210.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 417 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 60/264 (22%), Positives = 105/264 (39%), Gaps = 35/264 (13%) Query: 53 YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112 Y E I +Q ++ + +K + K+ + LS + S LK L KR I Sbjct: 153 YHVEDIPVQKADAALVKDLEDYFAKEKGFKLNTSA--GYLSMLASLLKDLHKRHIIDTYP 210 Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRI 170 +N +++ PR + ++ + E K + L+ C GL Sbjct: 211 FIN-HSIRWEVGTPRYITREEVSRIA------ALGEDKLQGYEKVSRDMFLFSCLTGLSY 263 Query: 171 SEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227 ++ LT Q+I + I+ K + +PLLP I Y + Sbjct: 264 TDVYHLTEQHIFHEAGMTWIRKPRIKTGNVCHIPLLPEAAAIIKRYRGIHT--------- 314 Query: 228 PLFRGIRGKPLN------PGV--FQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGG 278 R R +P PG +++++ R G+ + T H RH+FA+ + LS G Sbjct: 315 ---RAFRHEPPKGYLLPIPGCDTVNIHLKKIARLCGIQKTLTYHMARHTFASQMTLSKGV 371 Query: 279 DLRSIQSILGHFRLSTTQIYTNVN 302 + S+ +LGH ++ TTQ+Y + Sbjct: 372 SIESVSKMLGHSQIKTTQVYAETS 395 >gi|304312423|ref|YP_003812021.1| Phage integrase [gamma proteobacterium HdN1] gi|301798156|emb|CBL46378.1| Phage integrase [gamma proteobacterium HdN1] Length = 434 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 72/163 (44%), Gaps = 21/163 (12%) Query: 149 TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------GKGDKIRIVPL 202 T+ + + + LL G R SE ++ +NI ++ + + G+ + L Sbjct: 246 TRQVTENAADCIRLLALTGARRSEVCAIRWRNIDAERGAIVLAPTEHKTGRKTGAKKTIL 305 Query: 203 LPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKP---LNPGVFQRYIRQLRRYLGLPL 258 LP+ AI+ + P D +FRG +G LN ++ R +RR LP Sbjct: 306 LPAPALAIVAKRERGQPDDY-------VFRGEQGSGHTWLNSKIWVR----IRREANLPD 354 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T H LRHSFAT L G + + LGH ++STT Y N Sbjct: 355 GITNHALRHSFATMLAVQGAEAAQLMKALGHAQISTTVRYINT 397 >gi|297618854|ref|YP_003706959.1| integrase family protein [Methanococcus voltae A3] gi|297377831|gb|ADI35986.1| integrase family protein [Methanococcus voltae A3] Length = 295 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 72/141 (51%), Gaps = 7/141 (4%) Query: 162 LLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220 L G+RISE ++++ ++ + D+S + GKG+K R V + + I +Y F Sbjct: 136 FLIKTGVRISEFINISLNDMDLSDRSIIIKSGKGNKDRYVFIDDELLLHIKQYLKYREF- 194 Query: 221 LNLNIQLPLFRGIRGKPLNPGV---FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 LN I LF G L+ G ++RY+R + + + L + T H LRH+F T + Sbjct: 195 LNPKID-RLFLTKSGYKLSEGQISDYRRYLRTISKDI-LNIIVTPHVLRHTFGTLACESN 252 Query: 278 GDLRSIQSILGHFRLSTTQIY 298 ++ + I+GH ++TT Y Sbjct: 253 MNIEILSKIMGHANVNTTMTY 273 >gi|23464847|ref|NP_695450.1| integrase/recombinase [Bifidobacterium longum NCC2705] gi|23464848|ref|NP_695451.1| integrase/recombinase [Bifidobacterium longum NCC2705] gi|23465124|ref|NP_695727.1| integrase/recombinase [Bifidobacterium longum NCC2705] gi|46190514|ref|ZP_00206495.1| COG0582: Integrase [Bifidobacterium longum DJO10A] gi|189438893|ref|YP_001953974.1| Integrase [Bifidobacterium longum DJO10A] gi|189439173|ref|YP_001954254.1| Integrase [Bifidobacterium longum DJO10A] gi|189440197|ref|YP_001955278.1| Integrase [Bifidobacterium longum DJO10A] gi|189440668|ref|YP_001955749.1| Integrase [Bifidobacterium longum DJO10A] gi|227547385|ref|ZP_03977434.1| integrase/recombinase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|317483182|ref|ZP_07942178.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA] gi|23325432|gb|AAN24086.1| probable integrase/recombinase [Bifidobacterium longum NCC2705] gi|23325433|gb|AAN24087.1| probable integrase/recombinase [Bifidobacterium longum NCC2705] gi|23325741|gb|AAN24363.1| probable integrase/recombinase [Bifidobacterium longum NCC2705] gi|189427328|gb|ACD97476.1| Integrase [Bifidobacterium longum DJO10A] gi|189427608|gb|ACD97756.1| Integrase [Bifidobacterium longum DJO10A] gi|189428632|gb|ACD98780.1| Integrase [Bifidobacterium longum DJO10A] gi|189429103|gb|ACD99251.1| Integrase [Bifidobacterium longum DJO10A] gi|227212129|gb|EEI80025.1| integrase/recombinase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|291516769|emb|CBK70385.1| Site-specific recombinase XerD [Bifidobacterium longum subsp. longum F8] gi|316915355|gb|EFV36781.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA] Length = 351 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 70/301 (23%), Positives = 118/301 (39%), Gaps = 31/301 (10%) Query: 19 QNWLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 ++WL + L RG S T+++Y ++ +L + + + ++ Sbjct: 21 RDWLHHWLPKVRGSSPKTVEAYRIGLESYVRWLETTEGTQRSHIGFGHFDRARLGRWVEW 80 Query: 78 RRTQK-IGDRSLKRSLSGIKSFLKY--LKKRKITTESNILNMRNLKKSNSLP-RALNEKQ 133 RT++ DR++ ++ ++ FL + L+ +T N +K P L E+ Sbjct: 81 MRTERGYSDRTIMLRMTTMRVFLDHAGLEHPALTALGNDAAGIRVKPPARKPVDHLGEEH 140 Query: 134 ALTLVDNVLLHTSHETKWI--DA---RNSAILYLLYGCGLRISEALSLTPQNI-MDDQST 187 L+ T W DA RN +L L+Y RI E +LT ++ MD + Sbjct: 141 TKALL----------TAWGTGDAKSRRNRMLLILMYDTAARIGELAALTIADVGMDKPAR 190 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 + + GK K R+VPL R + Y + P + PLF R + P R Sbjct: 191 VTLTGKRGKSRVVPLGERTRTHLAAYLEEFHPGPSMRDGDRPLFHSTRNGAIQPLSVDRI 250 Query: 247 IRQLRRYLG---------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L+ +P H +R + A L G L I +LGH +STT Sbjct: 251 DEILKTAAARARRGTCPSMPERVHCHLIRRTRAMDLYQQGVPLPLIMQLLGHESMSTTSA 310 Query: 298 Y 298 + Sbjct: 311 F 311 >gi|260664108|ref|ZP_05864961.1| Lj965 prophage integrase [Lactobacillus jensenii SJ-7A-US] gi|260561994|gb|EEX27963.1| Lj965 prophage integrase [Lactobacillus jensenii SJ-7A-US] Length = 375 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 79/169 (46%), Gaps = 36/169 (21%) Query: 162 LLYGCGLRISEALSLTPQNI------MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215 LL GLR SEAL+LT +I +D TL + G +K+++ P P + +I + Sbjct: 205 LLASTGLRKSEALALTWDDIDFINGVIDVNKTLAV-GLDNKVQVQP--PKSKSSIRQ--- 258 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLS-------------- 259 P NL L ++ K L+ VF Y +YL L P+ Sbjct: 259 -VPISANLANVLNEYKN-SEKILSAKVFHTYTG---KYLSLSKPMKWLEAIYNKAPKDLK 313 Query: 260 -TTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTT-QIYTNVNSKN 305 T H RH+FAT L+S +++Q +LGH + T IYT++N+KN Sbjct: 314 HITVHGFRHTFATLLISETDVKPKTVQMLLGHSNIQMTLDIYTHINNKN 362 >gi|189403476|ref|ZP_02795705.2| resolvase [Escherichia coli O157:H7 str. EC4486] gi|189360465|gb|EDU78884.1| resolvase [Escherichia coli O157:H7 str. EC4486] Length = 259 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 54/222 (24%), Positives = 94/222 (42%), Gaps = 48/222 (21%) Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYL------------LYGCGLRI 170 SLP A++ AL L L+ + SA+L+ L+ G RI Sbjct: 14 TSLPVAIDYPAALALRQMALVQDELPKYLLAPEVSALLHYVPDLHRKMLLATLWNTGARI 73 Query: 171 SEALSLT-------PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD--- 220 +EAL+LT P +TL+ Q R +P+ ++ + L P Sbjct: 74 NEALALTRGDFSLAPPYPFVQLATLK-QRTEKAARTAGRMPAGQQT----HRLVPLSDAW 128 Query: 221 -------LNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG------------LPLS 259 + +++P+ R + G+ +++ R +R ++G + Sbjct: 129 FVSQLQTMVATLKIPMERRNKRTGRTEKARIWEVTDRTVRTWIGQAVAAAAADGVTFSVP 188 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 189 VTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 230 >gi|331668097|ref|ZP_08368949.1| resolvase (Protein D) [Escherichia coli TA271] gi|331064611|gb|EGI36518.1| resolvase (Protein D) [Escherichia coli TA271] Length = 120 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 9/63 (14%) Query: 248 RQLRRYLG---------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 R +R ++G L + T HT RHS+A H+L G L+ +QS++GH +S+T++Y Sbjct: 30 RTVRAWIGEAVTADGVTLSVPVTPHTFRHSYAMHMLYVGIPLKVLQSLMGHKSISSTEVY 89 Query: 299 TNV 301 T V Sbjct: 90 TKV 92 >gi|189463323|ref|ZP_03012108.1| hypothetical protein BACCOP_04040 [Bacteroides coprocola DSM 17136] gi|189429942|gb|EDU98926.1| hypothetical protein BACCOP_04040 [Bacteroides coprocola DSM 17136] Length = 420 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 22/47 (46%), Positives = 33/47 (70%) Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G+ T H RHS+A+ LL NG D+ +I+S++GH + TTQIYT++ Sbjct: 355 GIKKHITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHI 401 >gi|256841220|ref|ZP_05546727.1| tyrosine recombinase XerC [Parabacteroides sp. D13] gi|256737063|gb|EEU50390.1| tyrosine recombinase XerC [Parabacteroides sp. D13] Length = 327 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 63/253 (24%), Positives = 108/253 (42%), Gaps = 29/253 (11%) Query: 61 QTIRQLSYTEIRAFISKRR----TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116 + IR ++ ++R++++ + K+ +++R LS SF +L+ +S + + Sbjct: 86 KNIRHITTDDLRSYLNDYQLTSGATKVTVDNIRRILS---SFFSWLEDEDYIVKSPVRRI 142 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 +K ++ T D L + I R+ A++ LL G+R+ E + L Sbjct: 143 HKVKVGKTVKE--------TYSDEALEQMRDHCEGI--RDLALIDLLASTGMRVGELVKL 192 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 +I + + GKGDK R V + K L+ Y D N + + L Sbjct: 193 NRNDIDFENRECIVTGKGDKQRRV-YFDARTKIHLQRYFAERIDDNPALFVSLL-----A 246 Query: 237 PLN----PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 P + GV R +R+L R L +P H R + AT + G + +Q +LGH L Sbjct: 247 PYDRLQISGVEIR-LRRLGRELNIP-KVHPHKFRRTLATMAIDKGMPIEQVQHLLGHQSL 304 Query: 293 STTQIYTNVNSKN 305 TT Y VN N Sbjct: 305 DTTLQYAMVNQTN 317 >gi|253571485|ref|ZP_04848891.1| integrase [Bacteroides sp. 1_1_6] gi|251838693|gb|EES66778.1| integrase [Bacteroides sp. 1_1_6] Length = 420 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 22/47 (46%), Positives = 33/47 (70%) Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G+ T H RHS+A+ LL NG D+ +I+S++GH + TTQIYT++ Sbjct: 355 GIKKHITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHI 401 >gi|146313149|ref|YP_001178223.1| phage integrase family protein [Enterobacter sp. 638] gi|145320025|gb|ABP62172.1| phage integrase family protein [Enterobacter sp. 638] Length = 336 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 66/308 (21%), Positives = 113/308 (36%), Gaps = 42/308 (13%) Query: 8 EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECD--------TRQFLIFLAFYTEEKIT 59 E ++FE + W + E R L +L Y RQ + AF + Sbjct: 34 EALAFEQYTVQNPWQEEKEDRRTLKELVDSWYSAHGITLKDGLKRQLAMHHAFECMGEPL 93 Query: 60 IQTIRQLSYTEIRA------FISKRRTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESN 112 + ++ R + R +++ R+L L+ ++ L + + E+ Sbjct: 94 ARDFDAQMFSRYREKRLKGEYARSNRVKEVSPRTLNLELAYFRAVFNELNRLGEWKGENP 153 Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172 + NMR + L Q L+ H + + ++ + G R SE Sbjct: 154 LKNMRPFRTEEMEMAWLTHDQISQLLGECKRHDHPDLE-------TVVRICLATGARWSE 206 Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232 A SL + + T KG K R VP+ E Y+ P D + + Sbjct: 207 AESLRKSQLAKYKITY-TNTKGRKNRTVPISK-------ELYESLPDDKKGRLFSDCY-- 256 Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 G F+ + R + LP H LRH+FA+H + NGG++ +Q +LGH + Sbjct: 257 --------GAFRSALE--RTGIELPAGQLTHVLRHTFASHFMMNGGNILVLQRVLGHTDI 306 Query: 293 STTQIYTN 300 T Y + Sbjct: 307 KMTMRYAH 314 >gi|113460700|ref|YP_718766.1| phage integrase [Haemophilus somnus 129PT] gi|112822743|gb|ABI24832.1| phage integrase [Haemophilus somnus 129PT] Length = 308 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 83/178 (46%), Gaps = 19/178 (10%) Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 + LN+ + TL+ L+ + E W + L+ G+R SEAL+LTP++ Sbjct: 116 KYLNQFELHTLITQ--LNLTKEINW-----DWFILLIAKTGMRFSEALALTPKDFDFAHQ 168 Query: 187 TLRIQG-----KGDKIRIVPLLPSVRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPL 238 TL I G + SVRK L++ + F N + P+F +R K Sbjct: 169 TLTINKTWNYKDGGGFQPTKNRSSVRKIPLDWQTIIQFAELIKNKPEEQPIF--VRKKIF 226 Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 N V IR+ ++ +P+ + H LRH+ A+ LL G + S+ LGH ++TTQ Sbjct: 227 NSTVNNILIRRCKK-ANIPI-ISLHGLRHTHASLLLFAGVSIASVARRLGHSNMTTTQ 282 >gi|87308618|ref|ZP_01090758.1| Integron integrase; Phage integrase; Phage integrase N-terminal SAM-like domain [Blastopirellula marina DSM 3645] gi|87288710|gb|EAQ80604.1| Integron integrase; Phage integrase; Phage integrase N-terminal SAM-like domain [Blastopirellula marina DSM 3645] Length = 67 Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 23/41 (56%), Positives = 28/41 (68%) Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 TAHT RHSFATHL+ D+R++Q +L H TT IYT V Sbjct: 12 TAHTFRHSFATHLIEVAYDIRTVQELLVHRDFRTTMIYTPV 52 >gi|322831291|ref|YP_004211318.1| integrase family protein [Rahnella sp. Y9602] gi|321166492|gb|ADW72191.1| integrase family protein [Rahnella sp. Y9602] Length = 332 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 63/150 (42%), Gaps = 34/150 (22%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL-------LPSVRKAI 210 +I+ L G R SEA L + + T + KG K R +P+ LP V+K Sbjct: 192 SIVKLCLSTGARWSEAEELNKNQVTKYKITY-TKTKGRKNRTIPISEELYESLPEVKKGR 250 Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 L + C G F RY + R + LP H LRH+FA Sbjct: 251 L--FKKCY----------------------GAF-RYALE-RTDIELPAGQLTHVLRHTFA 284 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 +H + NGG++ +Q +LGH + T Y + Sbjct: 285 SHFMMNGGNILVLQRVLGHTDIKMTMRYAH 314 >gi|326789890|ref|YP_004307711.1| integrase family protein [Clostridium lentocellum DSM 5427] gi|326540654|gb|ADZ82513.1| integrase family protein [Clostridium lentocellum DSM 5427] Length = 350 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 22/158 (13%) Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI----RIVPLL 203 E KWID+ IL++LY G R+SE L L +NI D L + G G K R +P+ Sbjct: 195 ENKWIDS----ILFMLY-TGFRVSEMLELKIENI--DLENLTMSG-GKKTAAGKRTIPIH 246 Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ-RYIRQLRRYLGLPLSTTA 262 + + YD N + LFR +G + ++ + + L L + Sbjct: 247 SKIVDIVKNRYDE-------NYEY-LFRTQKGTKMTADSYRVSFYNPIMEQLNLT-GSGC 297 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 H LRH+F + + S + +++ I+GH T IYT+ Sbjct: 298 HDLRHTFCSKMDSYNINATTLKRIMGHSTKDVTDIYTH 335 >gi|189345769|ref|YP_001942298.1| integrase [Chlorobium limicola DSM 245] gi|189339916|gb|ACD89319.1| integrase domain protein SAM domain protein [Chlorobium limicola DSM 245] Length = 223 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 52/212 (24%), Positives = 92/212 (43%), Gaps = 21/212 (9%) Query: 7 PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66 PE + + + W N+ E+ T ++Y D ++ FL E++ I T Sbjct: 16 PEFHALKAMPLELEWYANIRSEK-----TRRAYRNDVKELSRFLGITEPEEMRIVT---- 66 Query: 67 SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--- 123 + A+ + + + +++R L+ I S YL ++ + +L ++ +N Sbjct: 67 -RAHLLAWRTDLEQRNLAAATIRRKLASISSLFDYLCEQNAVLHNPVLGVKRPAANNNEG 125 Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD 183 + P AL + QA L+D +T R+ AIL L GLR E L +++ Sbjct: 126 TTP-ALGDSQARMLLDAPPANT-----LKGKRDRAILATLLYHGLRREELCRLQVKDLQQ 179 Query: 184 DQST--LRIQGKGDKIRIVPLLPSVRKAILEY 213 L I GK +KIR +P+ P ++ I EY Sbjct: 180 RSGVQHLCIHGKREKIRFLPMHPMAQRLIDEY 211 >gi|150004634|ref|YP_001299378.1| transposase [Bacteroides vulgatus ATCC 8482] gi|149933058|gb|ABR39756.1| transposase [Bacteroides vulgatus ATCC 8482] Length = 407 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 13/145 (8%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKG-DKIRIVPLLP--SVRKAILEYYDL 216 ++ C GL S+ L ++I++D + + KG K +I+ +P V IL Y Sbjct: 251 FVFCCFTGLAFSDIHDLKKEHIVEDSNGAKWIRKGRQKTKIMCNIPLMEVPLKILGKYST 310 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 + + + P+ + + +N Y+++L G+ + T H RH+FAT L+N Sbjct: 311 NEYCKSRGVLFPV---LCNQKMNA-----YLKELADICGIKKTLTTHVARHTFATFALAN 362 Query: 277 GGDLRSIQSILGHFRLSTTQIYTNV 301 G + S+ +LGH + T+ Y V Sbjct: 363 GVSIESVAKMLGHTNVQMTRHYARV 387 >gi|253563451|ref|ZP_04840908.1| integrase [Bacteroides sp. 3_2_5] gi|251947227|gb|EES87509.1| integrase [Bacteroides sp. 3_2_5] Length = 420 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 22/47 (46%), Positives = 33/47 (70%) Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G+ T H RHS+A+ LL NG D+ +I+S++GH + TTQIYT++ Sbjct: 355 GIKKHITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHI 401 >gi|253570202|ref|ZP_04847611.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251840583|gb|EES68665.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 409 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 20/150 (13%) Query: 162 LLYGC--GLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRI-VPLLPSVRKAILEYYD 215 L+ C G+ S+A+++T +N+ D + L+ + K +++R V LLP I +Y+D Sbjct: 253 FLFACYTGVAYSDAVTVTRENLYTGEDGKLWLKYRRKKNELRASVKLLPEAVALIEKYHD 312 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274 L I P R +++ L G+ + H RHSFA+ + L Sbjct: 313 DSRDTLFPMIHYPSMRN-------------HMKALAVLAGIKENLCYHVGRHSFASLVTL 359 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 G + +I S+LGH + TTQ+Y V K Sbjct: 360 EAGVPIETISSMLGHSNIQTTQVYARVTPK 389 >gi|332877049|ref|ZP_08444800.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684939|gb|EGJ57785.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 308 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 25/156 (16%) Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG--------KGDK--IRIVPLLPSVRKA 209 +Y+ GLRI E +L +I + T+ +Q +GDK +V P + + Sbjct: 133 IYISLSTGLRIGEVCALRWSDIDIEAGTISVQRTIERIYVIEGDKKHTELVINTPKTKNS 192 Query: 210 ILEYYDLCPFDLNL-NIQLPLFRGIRG---------KPLNPGVFQRYIRQLRRYLGLPLS 259 E P L ++ PL + + P P ++ Y ++L LG+P Sbjct: 193 CRE----IPMSKELISMVKPLKKIVNSDYYVLTNEPSPTEPRTYRNYYKRLMEQLGIP-K 247 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 H LRHSFAT + + D +++ +LGH +STT Sbjct: 248 LKYHGLRHSFATRCIESNCDYKTVSVLLGHSNISTT 283 >gi|295106975|emb|CBL04518.1| Site-specific recombinase XerD [Gordonibacter pamelaeae 7-10-1-b] Length = 395 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 6/111 (5%) Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLN-----IQLPLFRGIRGKPLNPGVFQRYIRQLR 251 IR V L + ++Y+ DL + PLF G P P + + Sbjct: 258 IRRVSLDAETNDRLADWYERSRADLRADGFRRTASTPLFAREDGSPYLPSMVYAGFSAMA 317 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301 R +GL + HTLRH+ AT+LL G +R +Q LGH ++ T QIY +V Sbjct: 318 REVGLDPAAHFHTLRHTHATYLLDQGVSIRVLQERLGHSSVNVTLQIYGHV 368 >gi|291288940|ref|YP_003517443.1| resolvase [Klebsiella pneumoniae] gi|290792072|gb|ADD63398.1| resolvase [Klebsiella pneumoniae] Length = 264 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|282877198|ref|ZP_06286036.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] gi|281300690|gb|EFA93021.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] Length = 410 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 14/140 (10%) Query: 167 GLRISEALSLTPQNIMDDQS----TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222 GL + L+ ++I+ D + + + K + +PLL + ILE Y P Sbjct: 260 GLAFIDVQQLSAEHIVQDNNGNYWIRKPRQKTKNMCNIPLL-DIPMQILEKYKSHPTCQK 318 Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLR 281 N+ LP+ P N + Y++++ G+ T HT RHS+AT + L+NG + Sbjct: 319 KNVLLPV-------PCNQKM-NSYLKEIADLCGISKCLTTHTARHSYATSVCLANGVSIE 370 Query: 282 SIQSILGHFRLSTTQIYTNV 301 ++ +LGH + TQ Y V Sbjct: 371 NVAKMLGHSNIKMTQHYARV 390 >gi|266619902|ref|ZP_06112837.1| putative integrase [Clostridium hathewayi DSM 13479] gi|323693669|ref|ZP_08107868.1| hypothetical protein HMPREF9475_02731 [Clostridium symbiosum WAL-14673] gi|288868532|gb|EFD00831.1| putative integrase [Clostridium hathewayi DSM 13479] gi|323502283|gb|EGB18146.1| hypothetical protein HMPREF9475_02731 [Clostridium symbiosum WAL-14673] Length = 278 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 74/298 (24%), Positives = 125/298 (41%), Gaps = 43/298 (14%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 E+L+E + +L E S T+Q Y R+ + FL+F E+ T + L Y E Sbjct: 7 EILREYRIYL----TEHEKSHATIQKY---VRELVWFLSFLQGEEPTKAKV--LEYRE-- 55 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL----PRA 128 + Q R++ LS I S+L YL +R LK +++ R Sbjct: 56 -----QLQQSHHARTVNAKLSAIHSYLDYLG-------LAACKVRFLKIQHTVFVDDSRD 103 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 L E + L+D + D+R ++ + G+R+SE LT + + ++ + Sbjct: 104 LTEAEYHRLLDAA-------KRKKDSRLYHVMLAICTTGIRVSELSFLTVEALHKGKAEI 156 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 R++GK IR + L + + + Y LF GKPL+ ++ Sbjct: 157 RMKGK---IRTILLTKELCRKLNAYAKEKGIRTGY-----LFCTRTGKPLDRSNICHDMK 208 Query: 249 QLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 +L R + P H LRH FA + +L + ILGH + TT+IY + ++ Sbjct: 209 KLCRAARVNPEKVFPHNLRHLFAKCYYAIKKNLAYLADILGHASVDTTRIYVAMGTRE 266 >gi|55709836|gb|AAV58821.1| integrase [Clostridium sp. CCRI-9842] Length = 397 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 28/168 (16%) Query: 157 SAILYLLYGCGLRISEALSLTPQN-------IMDDQSTLRIQGKG---------DKIRIV 200 AI+ LL G GLRISE LT ++ I+ LR G G +R + Sbjct: 214 DAIVILL-GTGLRISELCGLTDKDLDFENRVIIVSHQLLRNTGVGYYIDEPKTQSGVRKI 272 Query: 201 PLLPSVRKA----ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP----GVFQRYIRQLRR 252 P+ V +A I PF ++ LF G P+ G+F R +++ + Sbjct: 273 PMNEEVYQAFQRVIKNRKGAKPFIIDGYANF-LFLKQNGYPMTAVDYGGMFGRLVKKYNK 331 Query: 253 YL--GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 LP +TT H +RH+F T L + G + +++Q I+GH ++ T Y Sbjct: 332 SHEEALPKTTTPHAMRHTFCTRLANAGMNPKALQYIMGHSNITMTLNY 379 >gi|189439994|ref|YP_001955075.1| Integrase [Bifidobacterium longum DJO10A] gi|189428429|gb|ACD98577.1| Integrase [Bifidobacterium longum DJO10A] Length = 223 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 67/148 (45%), Gaps = 31/148 (20%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 +L L CGLR E + +++M D +L + GKGDK RIVP+ Sbjct: 80 MLRLGAECGLRRFEIAKVHSRDVMRDLVGWSLVVVGKGDKQRIVPIGD------------ 127 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST------TAHTLRHSFA 270 DL L L R G L PG + ++ Y+G LS TAH+LRH +A Sbjct: 128 ---DLAL-----LIRSANGY-LFPGRWSGHVES--SYVGRHLSDLLGDGWTAHSLRHRYA 176 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIY 298 T + DL + +LGH + TTQ Y Sbjct: 177 TTTYAATRDLLLVSKLLGHASVETTQRY 204 >gi|163791648|ref|ZP_02186044.1| integrase/recombinase, fragment (putative) [Carnobacterium sp. AT7] gi|159873070|gb|EDP67178.1| integrase/recombinase, fragment (putative) [Carnobacterium sp. AT7] Length = 183 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 11/152 (7%) Query: 153 DARNSAILYLL-YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211 +A L+L+ GLR+S+ + L Q+++ ++ ++ K K RI+ L S++ IL Sbjct: 26 NADRDVFLFLIGINSGLRMSDIVKLKKQDLISSKNPRIVEKKTGKTRIL-YLSSLQDLIL 84 Query: 212 EYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 EY DL P D LF +G + + +++ + LG HTLR +F Sbjct: 85 EYTKDLAPEDY-------LFPSTKGGHVEVNTVYQMFQKVAKLLGRD-DIGTHTLRKTFG 136 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 H D+ ++ I GH T+ Y +N Sbjct: 137 YHYYKKTKDVATLMEIFGHSSEKITKRYIGIN 168 >gi|322688558|ref|YP_004208292.1| phage integrase [Bifidobacterium longum subsp. infantis 157F] gi|320459894|dbj|BAJ70514.1| putative phage integrase [Bifidobacterium longum subsp. infantis 157F] Length = 587 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 70/301 (23%), Positives = 118/301 (39%), Gaps = 31/301 (10%) Query: 19 QNWLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 ++WL + L RG S T+++Y ++ +L + + + ++ Sbjct: 257 RDWLHHWLPKVRGSSPKTVEAYRIGLESYVRWLETTEGTQRSHIGFGHFDRARLGRWVEW 316 Query: 78 RRTQK-IGDRSLKRSLSGIKSFLKY--LKKRKITTESNILNMRNLKKSNSLP-RALNEKQ 133 RT++ DR++ ++ ++ FL + L+ +T N +K P L E+ Sbjct: 317 MRTERGYSDRTIMLRMTTMRVFLDHAGLEHPALTALGNDAAGIRVKPPARKPVDHLGEEH 376 Query: 134 ALTLVDNVLLHTSHETKWI--DA---RNSAILYLLYGCGLRISEALSLTPQNI-MDDQST 187 L+ T W DA RN +L L+Y RI E +LT ++ MD + Sbjct: 377 TKALL----------TAWGTGDAKSRRNRMLLILMYDTAARIGELAALTIADVGMDKPAR 426 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 + + GK K R+VPL R + Y + P + PLF R + P R Sbjct: 427 VTLTGKRGKSRVVPLGERTRTHLAAYLEEFHPGPSMRDGDRPLFHSTRNGAIQPLSVDRI 486 Query: 247 IRQLRRYLG---------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L+ +P H +R + A L G L I +LGH +STT Sbjct: 487 DEILKTAAARARRGTCPSMPERVHCHLIRRTRAMDLYQQGVPLPLIMQLLGHESMSTTSA 546 Query: 298 Y 298 + Sbjct: 547 F 547 >gi|255016170|ref|ZP_05288296.1| integrase [Bacteroides sp. 2_1_7] Length = 420 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 22/47 (46%), Positives = 33/47 (70%) Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G+ T H RHS+A+ LL NG D+ +I+S++GH + TTQIYT++ Sbjct: 355 GIKKHITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHI 401 >gi|225350722|ref|YP_002720709.1| integrase [Brachyspira hyodysenteriae WA1] gi|225216406|gb|ACN85139.1| integrase [Brachyspira hyodysenteriae WA1] Length = 274 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 26/152 (17%) Query: 150 KWIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQST---LRIQGKGDKIRIVPLL 203 K + +N I+ LY GLR+SE +++ ++ ++D T + + GKG+K R + L Sbjct: 114 KLSNEKNKLIIQTLYATGLRVSELINIKKKDCKKTIEDNITYMSVSVIGKGNKERKIKLK 173 Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR-YIRQLRRYLGLPLSTT- 261 + I+ + N ++ LF + N F R YI ++ GL T Sbjct: 174 IELYNKIINTF---------NSKIYLF-----ETKNKRAFTRQYIYKIVNTAGLKALGTR 219 Query: 262 ---AHTLRHSFATHLL-SNGGDLRSIQSILGH 289 HTLRHSFAT LL + L+++ LGH Sbjct: 220 QVHPHTLRHSFATELLIKDNKSLKAVSKYLGH 251 >gi|193063096|ref|ZP_03044188.1| resolvase [Escherichia coli E22] gi|192931355|gb|EDV83957.1| resolvase [Escherichia coli E22] Length = 243 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 172 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 215 >gi|167751366|ref|ZP_02423493.1| hypothetical protein EUBSIR_02352 [Eubacterium siraeum DSM 15702] gi|167655612|gb|EDR99741.1| hypothetical protein EUBSIR_02352 [Eubacterium siraeum DSM 15702] Length = 476 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 83/192 (43%), Gaps = 26/192 (13%) Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 P+ E Q LT N +L H+ K + + L G G+R E L+L ++ Sbjct: 183 PKKAREMQVLT--QNEILRFLHQAK--EEGYYELFLLELGTGMRRGEILALKWSDLNFAT 238 Query: 186 STLRIQGK---------------GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230 LRI+ + IR V L PS+ K ++ Y + D P Sbjct: 239 GELRIERQVYIIKAEVIISAPKTKASIRTVILPPSLLKTLVAYKET--VDSEWMFPSPTD 296 Query: 231 RGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290 G +P NP ++ ++ + G H LRH+FAT L NG D++++ +++GH Sbjct: 297 NG---RPRNPSSVRKRLQLILERAGCK-KVRFHDLRHTFATMALENGMDIKTLSAMIGHV 352 Query: 291 RLSTT-QIYTNV 301 TT IY+++ Sbjct: 353 SAETTLNIYSHI 364 >gi|160889618|ref|ZP_02070621.1| hypothetical protein BACUNI_02044 [Bacteroides uniformis ATCC 8492] gi|156860610|gb|EDO54041.1| hypothetical protein BACUNI_02044 [Bacteroides uniformis ATCC 8492] Length = 379 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 70/294 (23%), Positives = 123/294 (41%), Gaps = 28/294 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLSYTEIRAFIS 76 N L N+++ + + QS R+ I E+ T I R++ T + FI Sbjct: 83 HNRLSNMKLTGYMKLIAEQSVNNRVRKSAIHAVVCHLERYTPNGILLRKVDKTYLLGFID 142 Query: 77 KRRTQKIGDRSLKRSLSGIKSF-----LKYLKKRKITTESNILN-MRNLKKSNSLPRALN 130 + K +++L F L+Y R ++ + +N M +K + R Sbjct: 143 YLKKTKQEHCKKEKTLHVNTQFYYLKTLRYCLNRAVSEDYITVNPMNKIKNEDKPKRNRT 202 Query: 131 EKQALTLVD-NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 E+ LT+ + L+HT + A L+ + CGLR + ++L ++I D++ Sbjct: 203 ERDYLTIKELTRLVHTPFYNTLL---RKAFLFSCF-CGLRHCDIIALRWEDIRYDENGNA 258 Query: 190 ----IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245 IQ K + +PL K + P N +F G+ + + + Sbjct: 259 LLSIIQKKTKEAISLPLCSEAIKHL-------PDRGNAPETEKVFAGLVSLGRSNVILHK 311 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 ++ Q G+ T HT RH+ AT +L+ G DL ++ +LGH + TTQIY Sbjct: 312 WVEQA----GISKHVTFHTARHTHATMMLTLGVDLYTVSKLLGHTNIQTTQIYA 361 >gi|217388371|ref|YP_002333400.1| intergrase [Enterococcus faecalis] gi|260559874|ref|ZP_05832053.1| integrase [Enterococcus faecium C68] gi|8100684|gb|AAF72368.1|AF192329_29 integrase [Enterococcus faecalis] gi|3243185|gb|AAC34799.1| integrase [Enterococcus faecium] gi|80973251|gb|ABB53357.1| Int [Eggerthella lenta] gi|80973262|gb|ABB53367.1| Int [Clostridium sp. MLG245] gi|80973273|gb|ABB53377.1| Int [Enterococcus faecium] gi|216409913|dbj|BAH02348.1| int [Enterococcus faecalis] gi|260074098|gb|EEW62421.1| integrase [Enterococcus faecium C68] Length = 397 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 28/168 (16%) Query: 157 SAILYLLYGCGLRISEALSLTPQN-------IMDDQSTLRIQGKG---------DKIRIV 200 AI+ LL G GLRISE LT ++ I+ LR G G +R + Sbjct: 214 DAIVILL-GTGLRISELCGLTDKDLDFENRVIIVSHQLLRNTGVGYYIDEPKTQSGVRKI 272 Query: 201 PLLPSVRKA----ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP----GVFQRYIRQLRR 252 P+ V +A I PF ++ LF G P+ G+F R +++ + Sbjct: 273 PMNEEVYQAFQRVIKNRKGAKPFIIDGYANF-LFLKQNGYPMTAVDYGGMFGRLVKKYNK 331 Query: 253 YL--GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 LP +TT H +RH+F T L + G + +++Q I+GH ++ T Y Sbjct: 332 SHEEALPKTTTPHAMRHTFCTRLANAGMNPKALQYIMGHSNITMTLNY 379 >gi|83815635|ref|YP_444738.1| Phage integrase family protein [Salinibacter ruber DSM 13855] gi|83757029|gb|ABC45142.1| Phage integrase family protein [Salinibacter ruber DSM 13855] Length = 467 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 58/281 (20%), Positives = 113/281 (40%), Gaps = 27/281 (9%) Query: 35 TLQSYECDTRQFLIFLA-FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93 T +SY R+F F+ Y +++ + + E R + + R ++ R L Sbjct: 183 TFRSYRTTCRKFTAFIEETYGRDEVPFGALEAELFREFRTYCYEERGNSTN--TVGRELG 240 Query: 94 GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153 +++ +++ K + ++ + S L ++ + D L E+ + Sbjct: 241 IMRTLVRHAMKEGKLSAYPFEHI-TIDSEPSQKELLTPEEVERIAD---LEIDEESPAAE 296 Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-----TLRIQGKGDKIRIVPLLPSVRK 208 AR L+ Y G+R S+ +L Q+I + +S +++ D + VPL+P ++ Sbjct: 297 ARR-WFLFAYYAGGMRFSDVATLQWQHIREGRSGRPRVCYKMKKTADTVG-VPLIPEAKE 354 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGI---------RGKPLNPGVFQRYIRQLRRYLGLPLS 259 + Y + D P+ GI R K R++++L G+ Sbjct: 355 ILCRYEEGDGEDW----VFPISEGIDPGNEEALHRRKCQRNSAANRHLKELAGQAGIEKR 410 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 T H R++ A L N GD+ + LGH + TQ Y + Sbjct: 411 VTFHLSRNAAAWKLYQNVGDIYKVSKFLGHSNVEQTQDYID 451 >gi|325851900|ref|ZP_08171033.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325484677|gb|EGC87591.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 417 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 61/185 (32%), Positives = 82/185 (44%), Gaps = 30/185 (16%) Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTL 188 E+ ALT D L + + +D N L L GC GL S+ L +DD TL Sbjct: 219 ERNALTSDDLHKLLSYRPHRSVD--NHCRLIFLLGCFTGLAFSDLKKLR----LDDVYTL 272 Query: 189 R--------IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240 + K IVPLLP + + D L LFR P N Sbjct: 273 DDGRRYISLCRTKTQNRSIVPLLPIAEEILTIVSDGRKEGL-------LFREF---PTNS 322 Query: 241 GVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQI 297 F R IR + GLP T T+HT RH+FAT + L NG + ++ +LGH +STT++ Sbjct: 323 H-FNRKIRDIIIKAGLPPHTEATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEL 381 Query: 298 YTNVN 302 Y V+ Sbjct: 382 YAKVS 386 >gi|290476509|ref|YP_003469414.1| tyrosine recombinase, regulator of fimA [Xenorhabdus bovienii SS-2004] gi|289175847|emb|CBJ82650.1| tyrosine recombinase, regulator of fimA [Xenorhabdus bovienii SS-2004] Length = 207 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 67/157 (42%), Gaps = 2/157 (1%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEY 213 RN ++++ + G R+SE L L + + LR+Q K I P++ + I ++ Sbjct: 31 RNICMIFMGFIHGFRVSELLGLKLSDADLEGKKLRVQRLKNGFSTIHPMVMREVQLIRQW 90 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 N LF G P++ F + IRQ L + H LRHS L Sbjct: 91 LAQRQKYKNSEQNDWLFLSRTGVPMSRQQFYKIIRQTSLQANLAVCANPHMLRHSCGYAL 150 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNS-KNGGDW 309 NG D R IQ LGH + T YT N+ + G W Sbjct: 151 ADNGVDTRLIQDYLGHRNIRHTVRYTASNAGRFGAIW 187 >gi|120553132|ref|YP_957483.1| phage integrase family protein [Marinobacter aquaeolei VT8] gi|120322981|gb|ABM17296.1| phage integrase family protein [Marinobacter aquaeolei VT8] Length = 372 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 84/185 (45%), Gaps = 22/185 (11%) Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 LNE +AL V + + + RN + ++ GLR+SE +++ + +S Sbjct: 161 LNEDEALKFVSALGKISGRNNAHVRHRNILVGQMMLQTGLRVSEVCDFPLRDLPEVESNF 220 Query: 189 RIQ------GKGDKIRIVPLLPSVRKAILEYYDLCPFD----------LNLNIQLP-LFR 231 + GKG K R++ L+P+ + +L ++ D + I P LF Sbjct: 221 LLTPARCAFGKGAKSRMI-LIPN--ELLLRLWEYVDIDRERITERFSGIAEEIVSPKLFV 277 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291 +G PL+ ++ R+ +Y G+ + HTLRH+F T+ DL ++ +LGH Sbjct: 278 SEKGTPLSVNWVEKLFRKASKYTGI--NAHPHTLRHTFGTYHYLYNRDLITLSKLLGHSD 335 Query: 292 LSTTQ 296 TT+ Sbjct: 336 SETTK 340 >gi|328882938|emb|CCA56177.1| Integrase [Streptomyces venezuelae ATCC 10712] Length = 428 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 78/311 (25%), Positives = 125/311 (40%), Gaps = 36/311 (11%) Query: 37 QSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI--GDRSLKRSLS- 93 + Y D + L F T + ++++ S IR ++ K+ G L R +S Sbjct: 105 EQYRKDCLRELEMYIFPTFGECDVRSVGHFSSDTIRGWVRVLEQTKVRKGRGPLNRMMSP 164 Query: 94 ----GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET 149 + L + + E L RN + +LPR + D L T E Sbjct: 165 KTIRNLHGLLSSILNEAVRAEPP-LRARNPCERTNLPRRDDGGTGPEDEDIEFL-TPQEV 222 Query: 150 KWIDAR-----NSAILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQ--------GKGD 195 I R + ++ + YG GLR SE +L P ++D D + +R+Q G+G Sbjct: 223 AAIRERLTIRQDQLMVEVKYGTGLRYSELTALAPYCLLDSDPARVRLQVHRAWKKDGEGG 282 Query: 196 KIRIVPLLPSVR------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----QR 245 +P R K+++E + L+ F G +G+ L+ F QR Sbjct: 283 YYVGMPKSKRSRRTIRVSKSVIEALNELRRTEELDDDSLFFTGDQGQRLHYSTFYDRWQR 342 Query: 246 YIRQLRRYLGLPL--STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVN 302 IR+ + LP+ T H LRHS A L+S G +Q LGH + TT +Y ++ Sbjct: 343 AIRKAKEDGVLPIYKHPTPHDLRHSHAAALISAGHSPTYVQRRLGHESIKTTSDLYGHLL 402 Query: 303 SKNGGDWMMEI 313 + D M I Sbjct: 403 PETDDDAMETI 413 >gi|332796945|ref|YP_004458445.1| XerC/D integrase-recombinase protein [Acidianus hospitalis W1] gi|332694680|gb|AEE94147.1| XerC/D integrase-recombinase protein [Acidianus hospitalis W1] Length = 286 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 66/273 (24%), Positives = 113/273 (41%), Gaps = 65/273 (23%) Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKK--RKITTES------NILNMRNLKKSNS 124 AFI + + G+ ++K + +K FL+++KK + +T+E ++++ K Sbjct: 17 AFIIALKAAEAGEGTVKLYSTAVKDFLEFIKKDPKSVTSEDVNRWIIHLMSKEGKIKGTE 76 Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDA------------------------------ 154 + RA +++TL N ++ KWI Sbjct: 77 MKRA----RSVTL-RNYVIAVRRFLKWIGVNVNPVIPRARRKEIRALNEDEINRLFEATR 131 Query: 155 --RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAIL 211 R+ IL L GLR E LSL ++I +R+ + K + RIV K + Sbjct: 132 RLRDKLILRLFLDTGLRSKELLSLRVEDIDLKNRMIRVKETKNGEERIVFFTEETEKLLR 191 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ---RYIRQLRRYLGLPLSTTAHTLRHS 268 +Y L + + L P +Q + I++L G+ H LRH+ Sbjct: 192 KY---------------LTKQGSSERLFPMTYQALYKLIKRLGERAGIK-GLRPHILRHT 235 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 FAT + G L ++Q +LGH + TTQIYT++ Sbjct: 236 FATIAIRRGLPLPAVQRLLGHKDIKTTQIYTHL 268 >gi|262067785|ref|ZP_06027397.1| site-specific recombinase, phage integrase family [Fusobacterium periodonticum ATCC 33693] gi|291378508|gb|EFE86026.1| site-specific recombinase, phage integrase family [Fusobacterium periodonticum ATCC 33693] Length = 360 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 25/202 (12%) Query: 96 KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155 K++ KYLK + T E KK++ R + +++ L DN+ + +++ ID Sbjct: 162 KNYAKYLKTK--TVEKG-------KKTSDRERVITQEELQVLWDNISNNETNKHGIIDM- 211 Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK--IRIVPLLPSVRKAILEY 213 +L L Y GLRISE L + +++ ++ ++ K +R VP+ IL+ Sbjct: 212 ---VLILCY-TGLRISELLRVKRKDVYLNEYYFEVEKSKSKAGVRKVPIADK----ILDL 263 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 + F + L++ + G + F + R L R LGL + H RH+FA+ L Sbjct: 264 FRARYFSKDK----YLWQRLDGLEYDYDSFDNHFRILFRDLGLSYHS-LHDTRHTFASLL 318 Query: 274 LSNGGDLRSIQSILGHFRLSTT 295 N D +I I+GH TT Sbjct: 319 SDNVADKDAIIKIIGHSNYKTT 340 >gi|38637764|ref|NP_942738.1| putative integrase/recombinase [Ralstonia eutropha H16] gi|32527102|gb|AAP85852.1| putative integrase/recombinase [Ralstonia eutropha H16] Length = 386 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 75/175 (42%), Gaps = 31/175 (17%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIM---DDQST----LRIQGKGDKIRIVPLLPSV 206 AR +L +LY GLR SE + T D T L + GKG+KIR+VP + Sbjct: 189 ARCRWVLTVLYLGGLRASELTATTMGAFFCRRDSHGTERWWLEVNGKGNKIRLVPATDEL 248 Query: 207 RKAILEY---YDLCP---FDLNLNIQLPLFRGIRG--KPLNPG--------VFQRYIRQL 250 + Y Y L P F + LP+ G G K L+ G VF + +L Sbjct: 249 IAELARYRRAYALPPTPQFGETRPLVLPVI-GKAGSEKALSRGALHLILKEVFGQAAARL 307 Query: 251 RR-------YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 R + S +AH LRH+ +H+ DLR ++ GH LSTT Y Sbjct: 308 RARGPEWEPQAAVLASASAHWLRHTAGSHMTDQQVDLRFVRDNFGHSSLSTTSGY 362 >gi|322690987|ref|YP_004220557.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217] gi|322691351|ref|YP_004220921.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217] gi|320455843|dbj|BAJ66465.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217] gi|320456207|dbj|BAJ66829.1| putative phage integrase [Bifidobacterium longum subsp. longum JCM 1217] Length = 351 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 70/301 (23%), Positives = 118/301 (39%), Gaps = 31/301 (10%) Query: 19 QNWLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 ++WL + L RG S T+++Y ++ +L + + + ++ Sbjct: 21 RDWLHHWLPKVRGSSPKTVEAYRIGLESYVRWLETTEGTQRSHIGFGHFDRARLGRWVEW 80 Query: 78 RRTQK-IGDRSLKRSLSGIKSFLKY--LKKRKITTESNILNMRNLKKSNSLP-RALNEKQ 133 RT++ DR++ ++ ++ FL + L+ +T N +K P L E+ Sbjct: 81 MRTERGYSDRTIMLRMTTMRVFLDHAGLEHPALTALGNDAAGIRVKPPARKPVDHLGEEH 140 Query: 134 ALTLVDNVLLHTSHETKWI--DA---RNSAILYLLYGCGLRISEALSLTPQNI-MDDQST 187 L+ T W DA RN +L L+Y RI E +LT ++ MD + Sbjct: 141 TKALL----------TAWGTGDAKSRRNRMLLILMYDTAARIGELAALTIADVGMDKPAR 190 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY 246 + + GK K R+VPL R + Y + P + PLF R + P R Sbjct: 191 VTLTGKRGKSRVVPLGERTRTHLAAYLEEFHPGPSMRDGDGPLFHSTRNGAIQPLSVDRI 250 Query: 247 IRQLRRYLG---------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 L+ +P H +R + A L G L I +LGH +STT Sbjct: 251 DEILKTAAARARRGTCPSMPERVHCHLIRRTRAMDLYQQGVPLPLIMQLLGHESMSTTSA 310 Query: 298 Y 298 + Sbjct: 311 F 311 >gi|294644652|ref|ZP_06722402.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294809546|ref|ZP_06768241.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|292639986|gb|EFF58254.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294443246|gb|EFG12018.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] Length = 356 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 22/47 (46%), Positives = 33/47 (70%) Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G+ T H RHS+A+ LL NG D+ +I+S++GH + TTQIYT++ Sbjct: 291 GIKKHITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHI 337 >gi|120401480|ref|YP_951309.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] gi|120404558|ref|YP_954387.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] gi|120406442|ref|YP_956271.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] gi|119954298|gb|ABM11303.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] gi|119957376|gb|ABM14381.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] gi|119959260|gb|ABM16265.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] Length = 349 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 69/302 (22%), Positives = 123/302 (40%), Gaps = 32/302 (10%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI--GDR 86 RG S T+++Y D FL + + + + + RRT + G R Sbjct: 32 RGFSAATVRAYAFDVANLSRFLVQQAVGLVAVDAPLVFDWIDWQGV---RRTDQPTSGHR 88 Query: 87 S--------LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL-------NE 131 S + R ++ +++ +YL + T++ + + R + R L Sbjct: 89 SSTPPAASTVNRRVAAVRALFEYLVMTGVCTDNPVPSPRRGQGLRQSQRGLLGHLGPGRA 148 Query: 132 KQALTLVDNV-LLHTSHETKWIDA--------RNSAILYLLYGCGLRISEALSLTPQNIM 182 + LV L S T +DA R+ A++ ++ GLR +EA L ++ Sbjct: 149 RSGGRLVRQPQRLPESLSTNDVDAFLATLATHRDRAMVLVMLLGGLRSAEARGLLLTDVD 208 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRG-IRGKPLNP 240 + LR+ GKG K R VP+ + + Y P L + RG G P++ Sbjct: 209 MGRRRLRVIGKGGKERHVPVDAAFFTELAAYLRWERPPGLATPQCFVVLRGPTTGAPVSE 268 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + R+ R G H LRH++ T L + G DL ++++++GH TT Y + Sbjct: 269 AGLRSLFRRHRETSGA-TRVRPHRLRHTYGTELSAAGIDLLTLRALMGHVSPETTARYVH 327 Query: 301 VN 302 ++ Sbjct: 328 LS 329 >gi|227517510|ref|ZP_03947559.1| integrase [Enterococcus faecalis TX0104] gi|227075030|gb|EEI12993.1| integrase [Enterococcus faecalis TX0104] Length = 424 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 28/168 (16%) Query: 157 SAILYLLYGCGLRISEALSLTPQN-------IMDDQSTLRIQGKG---------DKIRIV 200 AI+ LL G GLRISE LT ++ I+ LR G G +R + Sbjct: 241 DAIVILL-GTGLRISELCGLTDKDLDFENRVIIVSHQLLRNTGVGYYIDEPKTQSGVRKI 299 Query: 201 PLLPSVRKA----ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP----GVFQRYIRQLRR 252 P+ V +A I PF ++ LF G P+ G+F R +++ + Sbjct: 300 PMNEEVYQAFQRVIKNRKGAKPFIIDGYANF-LFLKQNGYPMTAVDYGGMFGRLVKKYNK 358 Query: 253 YL--GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 LP +TT H +RH+F T L + G + +++Q I+GH ++ T Y Sbjct: 359 SHEEALPKTTTPHAMRHTFCTRLANAGMNPKALQYIMGHSNITMTLNY 406 >gi|261344170|ref|ZP_05971814.1| site-specific recombinase, phage integrase family [Providencia rustigianii DSM 4541] gi|282567765|gb|EFB73300.1| site-specific recombinase, phage integrase family [Providencia rustigianii DSM 4541] Length = 338 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 21/145 (14%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 ++ + G R SEA +LT I ++ T ++ KG + R +P+ Sbjct: 197 VVKICLATGARWSEAENLTATQIRNNTITY-VRTKGKRNRSIPISDE------------- 242 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNG 277 L +LP +G L + + L R + LP ++H LRH+FA+H + +G Sbjct: 243 ----LANELP--KGQGNNRLFKSCYSAFRSALERTGIELPKQQSSHVLRHTFASHFMMSG 296 Query: 278 GDLRSIQSILGHFRLSTTQIYTNVN 302 G++ +Q ILGH + T Y++ + Sbjct: 297 GNILVLQRILGHTDIKMTMRYSHFS 321 >gi|152973790|ref|YP_001338829.1| plasmid F resolvase-like protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150958572|gb|ABR80599.1| plasmid F resolvase-like protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 244 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 173 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 216 >gi|288561749|ref|YP_003429155.1| putative integrase-recombinase [Bacillus pseudofirmus OF4] gi|288548381|gb|ADC52263.1| putative integrase-recombinase [Bacillus pseudofirmus OF4] Length = 407 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 72/310 (23%), Positives = 121/310 (39%), Gaps = 44/310 (14%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL---------SYTE-IRAFISKRRTQ 81 +K T + Y D QF FL E + + L SY E ++ I + + Sbjct: 102 TKGTKKEYVRDLLQFFTFLQVTMENENDVPISSYLKGAHKRHIRSYQEWLKNLIRQDGKK 161 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR--NLKKSNSLPRALNEKQALTLVD 139 + R + +KSFL++L I + + +K R+L+ + L++ Sbjct: 162 GYPSSTRARKTTVVKSFLQWLYDEDIIKHPLPIAFKKSTYRKEERPDRSLSLNEVQDLLN 221 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST------LRIQGK 193 H N A+L +L+ GLR++E + N+ D S LR+ K Sbjct: 222 YYKDHPV---------NHALLLILFTTGLRVNEVATAKRSNVYYDASVNGGSYFLRVTTK 272 Query: 194 GDKIRIVPLLPSVRKAILEYYDL--CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI---- 247 G+K R + + +I L DL+ PLF +G P + YI Sbjct: 273 GNKRRDARIFNTTMDSIKRMRQLRGLKIDLDPTDDSPLFCTNKGNPYSYKYLSNYIIRII 332 Query: 248 -----RQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIYTN- 300 L+R G + + H RH F T+ ++ G + +Q +GH STT+ Y + Sbjct: 333 GAADFDWLKRKEG---NISPHWARHFFVTYSIIQKGIPIDVVQHTVGHSSRSTTEAYIDK 389 Query: 301 -VNSKNGGDW 309 ++ K W Sbjct: 390 YLDKKKDATW 399 >gi|329954304|ref|ZP_08295398.1| site-specific recombinase, phage integrase family [Bacteroides clarus YIT 12056] gi|328528010|gb|EGF54996.1| site-specific recombinase, phage integrase family [Bacteroides clarus YIT 12056] Length = 408 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 43/121 (35%), Positives = 62/121 (51%), Gaps = 17/121 (14%) Query: 203 LPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 L + KAILE Y D P N I LP+ I + +N Y++++ G+ + T Sbjct: 295 LLDIPKAILEKYKDKLP---NGKI-LPV---ISNQKMND-----YLKEIAAICGIEKNLT 342 Query: 262 AHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIY---TNVNSKNGGDWMMEIYDQT 317 H RHS AT LLSNG + ++ ILGH + TTQIY T++ N + + + D T Sbjct: 343 YHVARHSCATSVLLSNGVPIETVSKILGHTNIRTTQIYARITDLKVSNDMEMLAQKLDAT 402 Query: 318 H 318 H Sbjct: 403 H 403 >gi|256839902|ref|ZP_05545411.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13] gi|256738832|gb|EEU52157.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13] Length = 414 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 49/196 (25%), Positives = 95/196 (48%), Gaps = 11/196 (5%) Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 RAL++++ L+ L T E + +L++LY G+ + +LT + ++ D+ Sbjct: 119 RALHKEEVQRLLSPALRQTLPENR--REALDVLLFILYARGMVFKDVYNLT-RRMVTDRH 175 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245 ++ K V ++P + + + YY + PF ++ +G GK L+ R Sbjct: 176 IRYLRSKTGVPIDVEVVPELEEIMKRYYREDSPFVFPFLHEV--RKGCPGKELSEESALR 233 Query: 246 YI----RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY-TN 300 I R++ R GL + T + LRH++AT +L + + I +GH + TTQIY + Sbjct: 234 RINRSTREIGRKTGLSVPLTTYVLRHTWATLMLEDCQPVELISQCMGHSSIRTTQIYLSR 293 Query: 301 VNSKNGGDWMMEIYDQ 316 ++S+ + +YD+ Sbjct: 294 ISSRKVDTAVNGMYDR 309 >gi|116254979|ref|YP_770814.1| putative integrase/recombinase [Rhizobium leguminosarum bv. viciae 3841] gi|115259627|emb|CAK11608.1| putative integrase/recombinase [Rhizobium leguminosarum bv. viciae 3841] Length = 398 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 71/300 (23%), Positives = 120/300 (40%), Gaps = 65/300 (21%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFL---IFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 Q L ERGL+ T+ S++ + +FL L +T QT+ + Y E R Sbjct: 125 QYLSTERGLAAATMGSHKLLSLRFLREVCPLGVDGFAALTPQTV--IGYVE--------R 174 Query: 80 TQKIGDRSLKRSLSGI-KSFLKYLKKRKITT---ESNILNMRNLKKSNSLPRALNEKQAL 135 G +++ G+ ++FL+YL + + + ++R + + LP L ++ Sbjct: 175 HALDGSADSGKAMCGVVRAFLRYLHLKGFISMPLAGCVPSIRRWRLAG-LPTFLPPEKVQ 233 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD 195 ++D T + R+ A+L +L GLR SE +L +I T+ + GKG Sbjct: 234 KVLD-----ACDRTTAMGRRDYAVLMILAKLGLRASEVSNLNLDDIDWQSGTILVHGKGR 288 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYL 254 + +PL V A++ Y IR G+P + + ++R L ++ Sbjct: 289 RQATMPLRHDVGTALVAY-------------------IRHGRPAS-ACRRLFLRTLAPHV 328 Query: 255 GLPLSTT---------------------AHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 G + AH RHS AT LL +G I +L H R S Sbjct: 329 GFTSGSAITWIAKQALEQADIEGYAHHGAHLFRHSLATDLLRSGASFAEIGQLLRHRRPS 388 >gi|313158681|gb|EFR58070.1| site-specific recombinase, phage integrase family [Alistipes sp. HGB5] Length = 389 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 70/143 (48%), Gaps = 21/143 (14%) Query: 167 GLRISEALSLTPQNIMDDQSTLRI-----QGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221 GL ++ + LT +I D + R Q G + R V LLP V + + E Y D+ Sbjct: 256 GLSHADVVKLTHADIHTDDNGERWIIDRRQKTGTQFR-VKLLP-VAEMLYERYK----DM 309 Query: 222 NLNIQLPLFRGIRGKPLNP--GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGG 278 +L+ G R PL +R + R+ GL + T H RH+FAT + L+ G Sbjct: 310 HLS-------GDRVFPLKGTYNTLNMSLRHVARHAGLSFNPTIHLARHTFATTVTLTQGV 362 Query: 279 DLRSIQSILGHFRLSTTQIYTNV 301 L ++ +LGH +++TTQIY + Sbjct: 363 PLETVSKMLGHKQITTTQIYAKI 385 >gi|253564012|ref|ZP_04841469.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|251947788|gb|EES88070.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|301161685|emb|CBW21225.1| putative integrase/transposase [Bacteroides fragilis 638R] Length = 393 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 70/164 (42%), Gaps = 48/164 (29%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 A L+ Y GLR S+ +L+P+NI+ Q T I SV+ Sbjct: 237 AFLFCCYA-GLRYSDFTNLSPENIVKMHQETWLI------------YKSVK--------- 274 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-------------------GLP 257 N ++LPL+ GK + V +Y L + GL Sbjct: 275 ----TNTEVRLPLYLLFEGKGIE--VLNKYQDDLADFFKLRDNSNVNKELLIIAKLSGLN 328 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + HT RH+ AT L+ +G ++ ++Q +LGH + TTQ+YTN+ Sbjct: 329 KRISFHTARHTNATLLIYSGVNITTVQKLLGHKSVKTTQVYTNI 372 >gi|255690096|ref|ZP_05413771.1| integrase [Bacteroides finegoldii DSM 17565] gi|260624375|gb|EEX47246.1| integrase [Bacteroides finegoldii DSM 17565] Length = 308 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 66/267 (24%), Positives = 112/267 (41%), Gaps = 65/267 (24%) Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT------------ESN 112 +L E++ F+ ++ Q++ +S+K L +K +K+ K I + E+ Sbjct: 47 ELLENEVQEFVLQKLQQRLRAKSVKDILIVLKMVMKFGAKLGILSYQDWCIKFPPPQENK 106 Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172 LN+ N+ N K L + N H T RN I Y+ G+RI E Sbjct: 107 QLNVLNIA---------NHKAILQYISN------HFT----FRNLGI-YICLTTGIRIGE 146 Query: 173 ALSLTPQNIMDDQSTLRIQG--------KGDKIR--IVPLLPSVRKAILEYYDLCPFDLN 222 +LT +I + I+ G+KI I+ P + +I D+ Sbjct: 147 ICALTWDDIDIINGVICIRKTIERIYILDGEKIHTEIIIGTPKTQNSIR--------DIP 198 Query: 223 LNIQL-----PLFRGIRGK---------PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 +N +L PL + + GK P P ++ Y +++ L +P H LRHS Sbjct: 199 MNKELLKMLRPLKKIVNGKFYVLTNEEKPTEPRTYRNYYKRMMEQLNIP-PLKFHGLRHS 257 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTT 295 FAT + + D +++ ILGH ++TT Sbjct: 258 FATRCIESNCDYKTVSVILGHSDITTT 284 >gi|159904824|ref|YP_001548486.1| integrase family protein [Methanococcus maripaludis C6] gi|159886317|gb|ABX01254.1| integrase family protein [Methanococcus maripaludis C6] Length = 323 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 42/181 (23%), Positives = 84/181 (46%), Gaps = 12/181 (6%) Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 +++ LT + +++ +TK R+ IL +L+ G R SE ++LT ++ D +++ Sbjct: 136 DRETLTKIIDMIAEGRSQTK---VRDVIILRMLWDTGCRASEVVNLTYFDVDMDTGKIKV 192 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP---LN--PGVFQR 245 + K+ +L+YY + + +F+ +G+ +N VF++ Sbjct: 193 RNTKGKVERTVGCSKDTLNLLKYY--SNHQIYKTPKDHIFKNRKGEAKIEVNWISEVFRK 250 Query: 246 YIRQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 +R+L+ +P + H+LRH A LL G + ++ LGH L TT Y + Sbjct: 251 AVRKLKESGDIPNNKKLVVHSLRHGRAVDLLDKGFPIDIVKEYLGHSSLETTLFYAHAKE 310 Query: 304 K 304 + Sbjct: 311 R 311 >gi|148377832|ref|YP_001256708.1| Phage family integrase [Mycoplasma agalactiae PG2] gi|148291878|emb|CAL59269.1| Phage family integrase [Mycoplasma agalactiae PG2] Length = 307 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 11/152 (7%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEY 213 +++L+ GLR SEA++LTP + + L I + + LP SVRK L++ Sbjct: 138 LIFLIAKTGLRFSEAVALTPDDFDFTKQLLNISKTWNYKELGGFLPTKNKSSVRKIQLDW 197 Query: 214 YDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 + F L P+F + K N + R+ ++ +P + H LRH+ A Sbjct: 198 QTISRFASLVQGLEKNKPIF-VFKEKVFNSTINDILARRCKK-AKIPAVISIHGLRHTHA 255 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQ-IYTNV 301 + LL G + S+ LGH ++TT+ IY ++ Sbjct: 256 SILLYAGVSIASVAKRLGHSSMNTTERIYLHI 287 >gi|300837023|ref|YP_003754077.1| resolvase [Klebsiella pneumoniae] gi|299474827|gb|ADJ18651.1| resolvase [Klebsiella pneumoniae] Length = 259 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|255015532|ref|ZP_05287658.1| putative bacteriophage integrase [Bacteroides sp. 2_1_7] Length = 371 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 14/146 (9%) Query: 163 LYGC--GLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219 L+ C LR+S+ LSL + I+D + + + K + ++P + LE CP Sbjct: 223 LFSCLTSLRLSDILSLCWEEIVDFAAGGKCVHTITQKTKTEDIIP-ISDEALELIGYCPE 281 Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279 L +F+G L Q+ +++ R G+ + T H+ R ++AT + G D Sbjct: 282 KKGL-----VFKG-----LKRSWTQQPMKEWIRSAGITKNITFHSYRRTYATLQAAAGTD 331 Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKN 305 +R+IQS + H ++TTQ Y V N Sbjct: 332 IRTIQSNMAHKSITTTQRYMKVVDSN 357 >gi|70727580|ref|YP_254496.1| integrase [Staphylococcus haemolyticus JCSC1435] gi|68448306|dbj|BAE05890.1| integrase [Staphylococcus haemolyticus JCSC1435] Length = 404 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 23/167 (13%) Query: 167 GLRISEALSLTPQNIMDDQSTLRIQG------KGDKI------------RIVPLLPS--- 205 G+RI E L++ P NI + L I G G+K+ R + L Sbjct: 230 GMRIGELLAIQPDNIDFENKKLVIDGTIHWRKDGNKVGFKDTTKTASSYRTISLTTRSCD 289 Query: 206 -VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 +R+ +LE +++ + +F RG L R I+ + +G+ T+HT Sbjct: 290 ILRRVMLENKKAVQWEIMYVDRGFIFTSHRGNSLPLTSINRNIQIAAQNIGIEKHVTSHT 349 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310 +RHS + L G LR+I +GH TT QIY++V + D M Sbjct: 350 MRHSHISLLSQLGVSLRAIMERVGHTDHKTTLQIYSHVTEQMDKDMM 396 >gi|53711957|ref|YP_097949.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|60680159|ref|YP_210303.1| putative integrase/transposase [Bacteroides fragilis NCTC 9343] gi|52214822|dbj|BAD47415.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|60491593|emb|CAH06345.1| putative integrase/transposase [Bacteroides fragilis NCTC 9343] Length = 393 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 70/164 (42%), Gaps = 48/164 (29%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 A L+ Y GLR S+ +L+P+NI+ Q T I SV+ Sbjct: 237 AFLFCCYA-GLRYSDFTNLSPENIVKMHQETWLI------------YKSVK--------- 274 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-------------------GLP 257 N ++LPL+ GK + V +Y L + GL Sbjct: 275 ----TNTEVRLPLYLLFEGKGIE--VLNKYQDDLADFFKLRDNSNVNKELLIIAKLSGLN 328 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + HT RH+ AT L+ +G ++ ++Q +LGH + TTQ+YTN+ Sbjct: 329 KRISFHTARHTNATLLIYSGVNITTVQKLLGHKSVKTTQVYTNI 372 >gi|238753673|ref|ZP_04615035.1| Integrase [Yersinia ruckeri ATCC 29473] gi|238708225|gb|EEQ00581.1| Integrase [Yersinia ruckeri ATCC 29473] Length = 95 Score = 50.1 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 5/78 (6%) Query: 229 LFRGIRGK---PLNPGVFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSI 283 +F+ ++ K + P V +RQL + + LP H LRH+FA+H + NGG++ ++ Sbjct: 1 MFKELKAKGNGKVYPDVDYLLVRQLLKEIAPDLPKGQAIHALRHTFASHFMMNGGNILTL 60 Query: 284 QSILGHFRLSTTQIYTNV 301 Q ILGH + T Y ++ Sbjct: 61 QKILGHSNILQTMTYAHL 78 >gi|297618820|ref|YP_003706925.1| integrase family protein [Methanococcus voltae A3] gi|297377797|gb|ADI35952.1| integrase family protein [Methanococcus voltae A3] Length = 295 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 74/272 (27%), Positives = 122/272 (44%), Gaps = 23/272 (8%) Query: 32 SKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 SK TL+SY F+ F + E ITI Y R+ K I + R Sbjct: 20 SKDTLKSYRASLNIFMNFFQEKSWETITIDDA-LFFYNNYRSHNGK----PIQISTTIRR 74 Query: 92 LSGIKSFLKYLKKRKITTESNI-LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150 L+ + F ++ + K + + L +R L+ P+ L E+Q L+ LL + E Sbjct: 75 LTDVNRFYEWAIENKYLINNPLKLYVRTLR-----PQ-LKERQCLSKNQAKLLLSKIE-- 126 Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 D L G+RISE ++++ ++ + D+S + GKG+K R V + + Sbjct: 127 --DYHYYIFTLFLIKTGVRISEFINISLNDMDLSDRSIIIKSGKGNKDRYVFIDDELLLH 184 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV---FQRYIRQLRRYLGLPLSTTAHTLR 266 I +Y F LN I LF G L+ G ++RY+R + + + L + T H LR Sbjct: 185 IKQYLKYREF-LNPKID-RLFLTKGGYKLSEGQISDYRRYLRTISKDI-LNIIVTPHVLR 241 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 H+F T + ++ + I+GH ++TT Y Sbjct: 242 HTFGTLACESNMNIEILSKIMGHANVNTTMTY 273 >gi|329919718|ref|ZP_08276674.1| site-specific recombinase, phage integrase family [Lactobacillus iners SPIN 1401G] gi|328937237|gb|EGG33663.1| site-specific recombinase, phage integrase family [Lactobacillus iners SPIN 1401G] Length = 329 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 54/251 (21%), Positives = 108/251 (43%), Gaps = 25/251 (9%) Query: 61 QTIRQLSYTEIRAFISK----RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116 + +R++ ++R ++++ + + K+ +++R LS SF +L+ +S + Sbjct: 88 KNVREMETDDLRTYLTEYQQEKNSSKVTVDNIRRILS---SFFSWLEDENYILKSPARRI 144 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 +K + ++ ++ + DN +AR+ A++ +L G+R+ E + L Sbjct: 145 HKVKAALTIKETYTDESLEKMRDNCE----------EARDLALIDMLASTGMRVGELVLL 194 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG- 235 +I ++ + GKG K R+V + +L Y D LF +R Sbjct: 195 NRDDINFEERECVVFGKGSKERMVYFDARTKIHLLTYLRERTDD-----NPALFVSLRSP 249 Query: 236 -KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 + L G + +R+L L + H R + AT + G + +Q +LGH R+ T Sbjct: 250 HERLKIGGVECRLRELGNKLNIE-KIHPHKFRRTLATMAIDKGMPIEQLQQLLGHKRIDT 308 Query: 295 TQIYTNVNSKN 305 T Y V N Sbjct: 309 TLQYAMVKQSN 319 >gi|312902063|ref|ZP_07761324.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0470] gi|311290845|gb|EFQ69401.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0470] Length = 309 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 13/147 (8%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV------RKAILE 212 + L+ GLR SEAL+LTP++ + + I+ + S RK ++ Sbjct: 141 FILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKNPTGFFQSTKNESSKRKVQID 200 Query: 213 YYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 + F N+ P+F ++G+ N + R ++ L R +P+ T H+LRH+ Sbjct: 201 WQTAMQFSQLIRNMPPMEPIF--VKGRVFNSTINSR-LKVLCRRAQIPV-ITVHSLRHTH 256 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ 296 A+ LL G + S+ + LGH ++TTQ Sbjct: 257 ASLLLFAGVSIASVATRLGHSSMTTTQ 283 >gi|213692031|ref|YP_002322617.1| phage integrase family protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523492|gb|ACJ52239.1| phage integrase family protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458143|dbj|BAJ68764.1| putative phage integrase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 391 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 67/274 (24%), Positives = 117/274 (42%), Gaps = 38/274 (13%) Query: 52 FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES 111 Y EE+ + I ++ E++A+IS G S++R + + + K+ ++ Sbjct: 95 LYCEERWADRRIGTITRAEVQAWISDI-IASAGAPSVRRPYQTMLGICRMAVRDKLILDN 153 Query: 112 NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET---KWIDARNSAILYLLYGCGL 168 N+ K LPR + + LT+ + LL + E K + A A++ L CGL Sbjct: 154 PCENVELPK----LPRRKSRRVYLTI--SRLLAFADECSRGKHLGAERRALVLTLGFCGL 207 Query: 169 RISEALSLTPQNIMDDQSTLRIQG--------------KGDKIRIVPLLPSVRKAILEYY 214 R EA +L +++ + L + G K + R VP+ V +A Sbjct: 208 RWGEAAALKARDLDFGRGVLHVGGNLVYVGARWVEGTPKNSEERDVPMPLIVMEA----- 262 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR----YIRQLRRYLGLPLS--TTAHTLRHS 268 L P +FR +RG P+ + + L R LG P T H LRH+ Sbjct: 263 -LKPMCGEREPDERVFRDLRGGPIMKQSAAKTTGWWYHALVR-LGWPKEEWPTPHDLRHT 320 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301 A+ + G +++++Q +LGH S T +Y ++ Sbjct: 321 AASLAVHAGANVKALQRMLGHKNASMTLDVYADL 354 >gi|154488041|ref|ZP_02029158.1| hypothetical protein BIFADO_01611 [Bifidobacterium adolescentis L2-32] gi|154083514|gb|EDN82559.1| hypothetical protein BIFADO_01611 [Bifidobacterium adolescentis L2-32] Length = 237 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 67/148 (45%), Gaps = 31/148 (20%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 +L L CGLR E + +++M D +L + GKGDK RIVP+ Sbjct: 94 MLRLGAECGLRRFEIAKVHSRDVMRDLVGWSLVVVGKGDKQRIVPIGD------------ 141 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST------TAHTLRHSFA 270 DL L L R G L PG + ++ Y+G LS TAH+LRH +A Sbjct: 142 ---DLAL-----LIRSANGY-LFPGRWSGHVES--SYVGRHLSDLLGDGWTAHSLRHRYA 190 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIY 298 T + DL + +LGH + TTQ Y Sbjct: 191 TTTYAATRDLLLVSKLLGHASVETTQRY 218 >gi|157418199|ref|YP_001481271.1| resolvase [Escherichia coli APEC O1] gi|169546498|ref|YP_001711907.1| hypothetical protein pVM01_p058 [Escherichia coli] gi|301646995|ref|ZP_07246831.1| site-specific recombinase, phage integrase family [Escherichia coli MS 146-1] gi|331652534|ref|ZP_08353545.1| resolvase (Protein D) [Escherichia coli M718] gi|88770249|gb|ABD51686.1| resolvase [Escherichia coli APEC O1] gi|168831050|gb|ACA34831.1| unknown [Escherichia coli] gi|301074840|gb|EFK89646.1| site-specific recombinase, phage integrase family [Escherichia coli MS 146-1] gi|331049640|gb|EGI21706.1| resolvase (Protein D) [Escherichia coli M718] Length = 263 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 191 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 234 >gi|295697898|ref|YP_003602555.1| putative resolvase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295060010|gb|ADF64747.1| putative resolvase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 258 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 188 VPVTPHTFRHSYALHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|283786566|ref|YP_003366431.1| fimbrial regulatory protein FimB [Citrobacter rodentium ICC168] gi|282950020|emb|CBG89649.1| fimbrial regulatory protein FimB [Citrobacter rodentium ICC168] Length = 201 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 58/196 (29%), Positives = 76/196 (38%), Gaps = 24/196 (12%) Query: 115 NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEAL 174 N + KK N L + NE ++L N H ARN + L + G R SE Sbjct: 3 NSADNKKRNFLTQ--NEIESLLKAANTGPHA--------ARNYCLTLLCFIHGFRASEIC 52 Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILEYYDLCPFDLNLNIQLP----- 228 L +I + I+ PLL K + + LN+ I P Sbjct: 53 RLQISDIDLKAKCIYIRRLKKGFSTTHPLLGEEIKTLRNW-------LNIRISWPCSDSE 105 Query: 229 -LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 LF +G PL+ F + I GLPL H LRHS L + G D R IQ L Sbjct: 106 WLFLSRKGNPLSRQQFYQIISAAGDQAGLPLEIHPHMLRHSCGFALANRGVDTRLIQDYL 165 Query: 288 GHFRLSTTQIYTNVNS 303 GH + T YT N+ Sbjct: 166 GHRNIRHTVWYTASNA 181 >gi|265765299|ref|ZP_06093574.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16] gi|263254683|gb|EEZ26117.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16] Length = 393 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 72/170 (42%), Gaps = 48/170 (28%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGKGDKIRIVPLLPSVRKAI 210 ++ A L+ Y GLR S+ +L+P+NI+ Q T I SV+ Sbjct: 231 LEKTKDAFLFCCYA-GLRYSDFTNLSPENIVKMHQETWLI------------YKSVK--- 274 Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL---------------- 254 N ++LPL+ GK + V +Y L + Sbjct: 275 ----------TNTEVRLPLYLLFEGKGIE--VLNKYQDDLADFFKLRDNSNVNKELLIIA 322 Query: 255 ---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 GL + HT RH+ AT L+ +G ++ ++Q +LGH + TTQ+YTN+ Sbjct: 323 KLSGLNKRISFHTARHTNATLLIYSGVNITTVQKLLGHKSVKTTQVYTNI 372 >gi|262202503|ref|YP_003273711.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262202582|ref|YP_003273790.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262085850|gb|ACY21818.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262085929|gb|ACY21897.1| integrase family protein [Gordonia bronchialis DSM 43247] Length = 608 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 56/192 (29%), Positives = 84/192 (43%), Gaps = 30/192 (15%) Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 LPR L++ A L+ T D + I+ LL G+RISE L LT ++ Sbjct: 327 LPRFLDDGAATKLLRAARADT-------DPLSRLIVELLARTGIRISELLGLTTDAVVQI 379 Query: 185 QST--LRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL--- 238 + LRI GK R +PL P +++ + ++ D P GIR L Sbjct: 380 GTAFWLRIPLGKMHNDRYIPLHPQLKELLDDWID---------NHRPT--GIRTSRLLVE 428 Query: 239 --NPGVFQRYIRQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 P R L R+ G+ TAH LRH+ AT ++ G L +I ++LGH L+ Sbjct: 429 NHRPITSHRVTAALDRHAEAAGIG-HVTAHQLRHTLATQAINRGMSLDAIAALLGHKTLA 487 Query: 294 TTQIYTNVNSKN 305 T +Y + + Sbjct: 488 MTMVYARIADRT 499 >gi|114566279|ref|YP_753433.1| integrase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337214|gb|ABI68062.1| putative integrase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 171 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 6/142 (4%) Query: 167 GLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLN 224 G R + +S I D++ + Q K D PLL SV AI++Y P Sbjct: 6 GWRTRDIVSFRFNQIDWDKNVIHFNQSKTDIPVEYPLLSSVGNAIVDYLKHGRPKTDAKE 65 Query: 225 IQLPLFRGIRGKPLNP----GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280 I + +G+PL+P + +Y+ + AH+LRHS AT++L N + Sbjct: 66 IIVAADTAKKGQPLSPPTVHSIVSKYMSKANIKNWKSKKHGAHSLRHSLATNMLKNNVSM 125 Query: 281 RSIQSILGHFRLSTTQIYTNVN 302 I +++GH TT+IY +V+ Sbjct: 126 PVISTVMGHQSTETTKIYLSVD 147 >gi|255012221|ref|ZP_05284347.1| putative integrase/transposase [Bacteroides fragilis 3_1_12] gi|313150062|ref|ZP_07812255.1| integrase [Bacteroides fragilis 3_1_12] gi|313138829|gb|EFR56189.1| integrase [Bacteroides fragilis 3_1_12] Length = 393 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 70/164 (42%), Gaps = 48/164 (29%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 A L+ Y GLR S+ +L+P+NI+ Q T I SV+ Sbjct: 237 AFLFCCYA-GLRYSDFTNLSPENIVKMHQETWLI------------YKSVK--------- 274 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL-------------------GLP 257 N ++LPL+ GK + V +Y L + GL Sbjct: 275 ----TNTEVRLPLYLLFEGKGIE--VLNKYQDNLADFFKLRDNSNVNKELLIIAKLSGLN 328 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + HT RH+ AT L+ +G ++ ++Q +LGH + TTQ+YTN+ Sbjct: 329 KRISFHTARHTNATLLIYSGVNITTVQKLLGHKSVKTTQVYTNI 372 >gi|262204532|ref|YP_003275740.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262087879|gb|ACY23847.1| integrase family protein [Gordonia bronchialis DSM 43247] Length = 608 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 56/192 (29%), Positives = 84/192 (43%), Gaps = 30/192 (15%) Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 LPR L++ A L+ T D + I+ LL G+RISE L LT ++ Sbjct: 327 LPRFLDDGAATKLLRAARADT-------DPLSRLIVELLARTGIRISELLGLTTDAVVQI 379 Query: 185 QST--LRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL--- 238 + LRI GK R +PL P +++ + ++ D P GIR L Sbjct: 380 GTAFWLRIPLGKMHNDRYIPLHPQLKELLDDWID---------NHRPT--GIRTSRLLVE 428 Query: 239 --NPGVFQRYIRQLRRYL---GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 P R L R+ G+ TAH LRH+ AT ++ G L +I ++LGH L+ Sbjct: 429 NHRPITSHRVTAALDRHAEAAGIG-HVTAHQLRHTLATQAINRGMSLDAIAALLGHKTLA 487 Query: 294 TTQIYTNVNSKN 305 T +Y + + Sbjct: 488 MTMVYARIADRT 499 >gi|194445766|ref|YP_002041997.1| phage integrase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194404429|gb|ACF64651.1| phage integrase [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 336 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 54/222 (24%), Positives = 92/222 (41%), Gaps = 53/222 (23%) Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 +K+G SL L+GI +F + +++ ++ SL + L+E + D+ Sbjct: 148 KKLGHWSLPNPLAGIPTF---------KVDEKMVSFLYPEEIKSLLQYLSESSS----DS 194 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 VL+ I + G R SEA +L + + T + K ++R + Sbjct: 195 VLI---------------ITKICLATGARWSEAENLEGAQVTPYRITYK-NTKNGRVRSI 238 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG--VFQRYIRQLRRYLGLPL 258 P+ E YD P RG+ P F+R + + + LP Sbjct: 239 PISK-------ELYDEIPKK-------------RGRLFTPCRKTFERVV--AKAGIELPD 276 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 H LRH+FA+H + NGG++ ++ ILGH + T IY + Sbjct: 277 GQCTHVLRHTFASHFMMNGGNILVLKEILGHSDIKMTMIYAH 318 >gi|10955352|ref|NP_053064.1| resolvase [Escherichia coli] gi|847970|gb|AAC44039.1| Rsv [Escherichia coli] gi|6009378|dbj|BAA84837.1| Resolvase [Escherichia coli] Length = 178 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 74/159 (46%), Gaps = 24/159 (15%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212 D R+ + ++ G+RI EA +LTP++ D ++ +K+R+VPL Sbjct: 3 DQRHHMLFATMWNTGIRIGEARTLTPESFDLDGLRPFVRVLSEKVRLVPLT--------- 53 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNP---GVFQRYIRQLRR-------YLGLPLSTTA 262 D+ F + + R R +PL P + +++Q + + +P+ T Sbjct: 54 --DVS-FVRQMESWMVTTRPRRREPLWPVTDETMRNWLKQAVKRAEADGVHFSIPV--TP 108 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 HT RHS+ H+L + + IQ++ GH + ++YT V Sbjct: 109 HTFRHSYIMHMLYHRQPRKVIQALAGHKDPRSMEVYTRV 147 >gi|226366649|ref|YP_002784432.1| phage integrase family protein [Rhodococcus opacus B4] gi|226245139|dbj|BAH55487.1| phage integrase family protein [Rhodococcus opacus B4] Length = 286 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 68/265 (25%), Positives = 111/265 (41%), Gaps = 24/265 (9%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK---RRTQKIG 84 +R LS T+++Y L F+A T+ + + + + AF+ R I Sbjct: 20 QRALSPATIRTYRDSWALLLTFVAERTQIPPHALELAHIDHRCVTAFLDHLENERGNSIA 79 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK-KSNSLPRA--LNEKQALTLVDNV 141 R+L+ L+ IK+ L + I ++ + K + P+ L Q L+D + Sbjct: 80 TRNLR--LAAIKAVLAFECATMPEHLETIAAVQAIPVKKHPRPQLSYLTATQVKALLDGI 137 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIV 200 T W R+ A+ L GLR+SE +SLT ++ + + + GKG K R Sbjct: 138 -----DTTTWTGRRDQAMFTLAAHTGLRVSELISLTVDSVHLGTAAHVACTGKGRKHRAT 192 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYL-GLP- 257 PL + + Y + + + LF RG+PL+ + QR +RR P Sbjct: 193 PLTTATAALLKTYL----HERHTHPGHALFPNPRGEPLSVDAIGQRLRTHVRRAARACPE 248 Query: 258 ---LSTTAHTLRHSFATHLLSNGGD 279 T HTLRH+ A L+ G D Sbjct: 249 LAGTHVTVHTLRHTAAMRFLAAGID 273 >gi|218128949|ref|ZP_03457753.1| hypothetical protein BACEGG_00521 [Bacteroides eggerthii DSM 20697] gi|217988912|gb|EEC55229.1| hypothetical protein BACEGG_00521 [Bacteroides eggerthii DSM 20697] Length = 411 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 22/153 (14%) Query: 162 LLYGC--GLRISEALSLTPQNIMDD----------QSTLRIQGKGDKIRIVPLLPSVRKA 209 ++ C GL S+ SL +N++ D + L + K I +PLLP V A Sbjct: 250 FVFACFTGLAFSDVASLNKENLVQDNLGDWWIRKGRVKLEHRRKASSISNIPLLP-VPLA 308 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 ILE Y P + LP+ + Y++++ + + + T H RH+F Sbjct: 309 ILEKYKEHPTCIKKGCCLPVMCNQK--------MNSYLKEIADFCSIKKNLTTHVARHTF 360 Query: 270 ATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T + L+N L+ + +LGH TQ Y V Sbjct: 361 GTTVTLANNVPLQDVSVMLGHASTRMTQHYARV 393 >gi|160937784|ref|ZP_02085143.1| hypothetical protein CLOBOL_02676 [Clostridium bolteae ATCC BAA-613] gi|158439223|gb|EDP16976.1| hypothetical protein CLOBOL_02676 [Clostridium bolteae ATCC BAA-613] Length = 278 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 74/298 (24%), Positives = 125/298 (41%), Gaps = 43/298 (14%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 E+L+E + +L E S T+Q Y R+ + FL+F E+ T + L Y E Sbjct: 7 EILREYRIYL----TEHEKSHATIQKY---VRELVWFLSFLQGEEPTKAKV--LEYRE-- 55 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL----PRA 128 + Q R++ LS I S+L YL +R LK +++ R Sbjct: 56 -----QLQQSHQARTVNAKLSAIHSYLDYLG-------LAACKVRFLKIQHTVFVDDSRD 103 Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 L E + L+D + D+R ++ + G+R+SE LT + + ++ + Sbjct: 104 LTEAEYHRLLDAA-------KRKKDSRLYHVMLAICTTGIRVSELSFLTVEALHKGKAEI 156 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 R++GK IR + L + + + Y LF GKPL+ ++ Sbjct: 157 RMKGK---IRTILLTKELCRKLNAYAKEKGIRTGY-----LFCTRTGKPLDRSNICHDMK 208 Query: 249 QLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 +L R + P H LRH FA + +L + ILGH + TT+IY + ++ Sbjct: 209 KLCRAARVNPEKVFPHNLRHLFAKCYYAIKKNLAYLADILGHASVDTTRIYVAMGTRE 266 >gi|221218554|ref|YP_002527512.1| hypothetical protein pO103_57 [Escherichia coli] gi|310286463|ref|YP_003937724.1| resolvase (protein D) [Escherichia coli] gi|215252882|gb|ACJ63541.1| conserved hypothetical protein [Escherichia coli] gi|308826792|emb|CBX36056.1| resolvase (Protein D) [Escherichia coli] Length = 263 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 191 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 234 >gi|170650847|ref|YP_001739996.1| resolvase [Escherichia coli SMS-3-5] gi|170522123|gb|ACB20300.1| resolvase [Escherichia coli SMS-3-5] gi|312949050|gb|ADR29876.1| Resolvase [Escherichia coli O83:H1 str. NRG 857C] Length = 258 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 186 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 229 >gi|327404951|ref|YP_004345789.1| integrase family protein [Fluviicola taffensis DSM 16823] gi|327320459|gb|AEA44951.1| integrase family protein [Fluviicola taffensis DSM 16823] Length = 421 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 14/114 (12%) Query: 200 VPLLPSVRKAILEY--YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 VPLLP + I +Y ++ C N LP+ R + Y++++ G+ Sbjct: 300 VPLLPIPLEIIAKYQEHEYCK---KYNKLLPVNSNQR--------YNSYLKEIVDLCGIN 348 Query: 258 LSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 T+H RH+FAT + L+NG + ++ +LGH + TTQIY V + D M Sbjct: 349 KKLTSHIARHTFATTVTLANGVPIETVSRMLGHTNIRTTQIYAKVVEQKVSDDM 402 >gi|299142947|ref|ZP_07036073.1| integrase [Prevotella oris C735] gi|298575563|gb|EFI47443.1| integrase [Prevotella oris C735] Length = 421 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 48/189 (25%), Positives = 88/189 (46%), Gaps = 35/189 (18%) Query: 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMD 183 PR++ +++ ++D E +W + R L++ + C GL I + +L +NI+ Sbjct: 237 PRSITQEELEHIID-------LEIEWENYRIVRDLFV-FSCFSGLAIFDVRNLREENIVL 288 Query: 184 DQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-- 238 ++ L I+G+ K + V +LP + + Y RGIR + Sbjct: 289 EEGELCIKGRRMKTKTPYRVQVLPPAQTIMNRY-----------------RGIRAGFVFD 331 Query: 239 --NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTT 295 V + ++R +G+ T H RH+FA+ + LS G + ++ +LGH L TT Sbjct: 332 VPTTDVILNGMHYIQRNIGMETPLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTT 391 Query: 296 QIYTNVNSK 304 Q+Y V+S+ Sbjct: 392 QVYAAVSSE 400 >gi|255021792|ref|ZP_05293815.1| fimbriae recombinase [Acidithiobacillus caldus ATCC 51756] gi|254968768|gb|EET26307.1| fimbriae recombinase [Acidithiobacillus caldus ATCC 51756] Length = 250 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 48/192 (25%), Positives = 86/192 (44%), Gaps = 23/192 (11%) Query: 130 NEKQALTLVD-NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL 188 +E++ LT ++ + LL + + + R+ ++ L+Y GLR++EA +L + + L Sbjct: 58 SERKHLTALEIDRLLAATKDNERTGLRDRCLILLMYRHGLRVTEACALQLDQVDLESKVL 117 Query: 189 ---RIQG--------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRG 232 R++G + ++IR++ + R L + ++Q P +F Sbjct: 118 HVTRLKGGLSTSHPLRNEEIRLLRSWLNERARWLRRWQ------KHDLQTPPDRQAVFLS 171 Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 +RG+ L+ + +R GL L H LRH+ L G D R IQ LGH + Sbjct: 172 VRGQALSRNTVWQLLRAYGEAAGLSLPPHPHMLRHACGYALADQGTDTRLIQDYLGHRNI 231 Query: 293 STTQIYTNVNSK 304 T YT N + Sbjct: 232 QHTVRYTATNVR 243 >gi|237708454|ref|ZP_04538935.1| transposase [Bacteroides sp. 9_1_42FAA] gi|229457675|gb|EEO63396.1| transposase [Bacteroides sp. 9_1_42FAA] Length = 430 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 22/153 (14%) Query: 162 LLYGC--GLRISEALSLTPQNIMDD----------QSTLRIQGKGDKIRIVPLLPSVRKA 209 ++ C GL S+ SL ++++ D + L + K I +PLLP V A Sbjct: 269 FVFACFTGLAFSDVASLNNEHLVQDNLGDWWIRKGRVKLERRRKASSISNIPLLP-VPLA 327 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 ILE Y P + LP+ + Y++++ + G+ + T H RH+F Sbjct: 328 ILEKYREHPACIKKGCCLPVMCNQK--------MNSYLKEIADFCGIKKNLTTHVARHTF 379 Query: 270 ATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T + L+N L+ + +LGH TQ Y V Sbjct: 380 GTTVTLANNVPLQDVSVMLGHASTRMTQHYARV 412 >gi|329996758|ref|ZP_08302555.1| site-specific recombinase, phage integrase family [Klebsiella sp. MS 92-3] gi|328539320|gb|EGF65345.1| site-specific recombinase, phage integrase family [Klebsiella sp. MS 92-3] Length = 241 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 170 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 213 >gi|153938928|ref|YP_001392711.1| phage integrase family site specific recombinase [Clostridium botulinum F str. Langeland] gi|152934824|gb|ABS40322.1| site-specific recombinase, phage integrase family [Clostridium botulinum F str. Langeland] gi|295320692|gb|ADG01070.1| site-specific recombinase, phage integrase family [Clostridium botulinum F str. 230613] Length = 199 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 43/191 (22%), Positives = 89/191 (46%), Gaps = 12/191 (6%) Query: 127 RALNEKQALTLVDNVLL-HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 + L +++A+ L + ++ SH R+ A+ + Y CGLR SE + + D+ Sbjct: 10 KYLTQQEAIRLFNAIIFSDNSHA-----VRDLALFRVAYRCGLRASEISLIKLDDYNADK 64 Query: 186 STLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 L + KG + L + +KA+ Y + + ++ N + LF+ + P++ Sbjct: 65 GDLYCKRLKGSNNNTIRLDVTTKKALDAY--IRDYKISCNSE-TLFKSQKNNPISRQTLD 121 Query: 245 RYIRQLRRYLGLPLSTTAH--TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 +++ + + + H TL+H+ A HL + D++ +Q LGH +S T+I+ Sbjct: 122 YLMKKYCKIANISDKSKHHFHTLKHTTAVHLAESEMDIKELQWWLGHKSVSNTEIHFQFT 181 Query: 303 SKNGGDWMMEI 313 +K M++ Sbjct: 182 TKQQEKMYMKL 192 >gi|209921988|ref|YP_002296061.1| resolvase [Escherichia coli SE11] gi|307313345|ref|ZP_07592968.1| integrase family protein [Escherichia coli W] gi|209915166|dbj|BAG80239.1| resolvase [Escherichia coli SE11] gi|306906767|gb|EFN37277.1| integrase family protein [Escherichia coli W] gi|315063802|gb|ADT78128.1| Resolvase [Escherichia coli W] gi|323380941|gb|ADX53208.1| integrase family protein [Escherichia coli KO11] Length = 259 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|254438890|ref|ZP_05052384.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] gi|198254336|gb|EDY78650.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] Length = 420 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 77/298 (25%), Positives = 124/298 (41%), Gaps = 34/298 (11%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT--IQTIRQLSYTEI 71 L +E + +L++ +RGLS+ T+ Y C L F + K + + + +I Sbjct: 124 LKREYETYLRS---QRGLSQDTI--YHC-----LRFCDRFLTAKFGTGLGELNTIKPGDI 173 Query: 72 RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRAL 129 FI + R + R K S +++ ++L T SN + KS +PR L Sbjct: 174 TGFILRLREAQNAPRD-KTGPSHLRNLFQFLFWSGKTERNLSNAVPKARQPKSTGIPRYL 232 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 +Q N L+ E + RN A+L L+ GLR E ++ +I + Sbjct: 233 EPEQV-----NRLIEVVREHRKTGRRNYAMLMLIARLGLRAPEVTAIELDDIDWRAGEIL 287 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYD----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245 I+GK +P+ V +AI++Y L ++++ PL R + L + Sbjct: 288 IRGKRQLHDRMPMPSEVGEAIVDYIQNERRGPERALFVSVKPPLKRFKDAQILRWILRDA 347 Query: 246 Y----IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 Y I + Y+G H LRHS AT +L G L I +L H TT IY Sbjct: 348 YDATGISPPQAYIG------THILRHSLATDMLRKGASLDEIGDVLRHRSAMTTTIYA 399 >gi|300215391|gb|ADJ79804.1| Integrase [Lactobacillus salivarius CECT 5713] Length = 365 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 75/160 (46%), Gaps = 6/160 (3%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ AI L+ G GLR+SE +++ +++ + + + + KG+K V + + + Y Sbjct: 205 RDLAINALMLGSGLRLSEVVNINIEDLDFENNRVAVLRKGNKKDSVRIAAFAMEYLANYR 264 Query: 215 DLCPFDLNLN-IQLPLFRGI-RG--KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 D+ + + F I RG K + ++ + + + G + T H LRH+ A Sbjct: 265 DIRASRYRADKYEKAFFLAISRGGSKRITGSAIEKMVSKYSK--GFKVRVTPHKLRHTLA 322 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 T L +L LGH +TT +YT++++ D + Sbjct: 323 TRLYKQTNNLVLTAQQLGHSSTATTTLYTHIDNDETTDAL 362 >gi|225568371|ref|ZP_03777396.1| hypothetical protein CLOHYLEM_04448 [Clostridium hylemonae DSM 15053] gi|225162819|gb|EEG75438.1| hypothetical protein CLOHYLEM_04448 [Clostridium hylemonae DSM 15053] Length = 330 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 4/148 (2%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ A++ Y +R+SE +L +++ L + GKG+K R V L + EY Sbjct: 173 RDKAMMEFFYSTAVRVSELAALNREDVHFVSKDLIVMGKGNKERTVYLNDRTNMYMKEYL 232 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 + D N + + L + G+ G+ + IR+ + G+ H R + AT+ L Sbjct: 233 E-SRTDSNQALFVSL-KKPHGRLGKTGI-EDIIRRTGQIAGVE-RAYPHRFRRTAATNAL 288 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + G ++ + +LGH +L TT +Y +V+ Sbjct: 289 NRGMPVQEVAQLLGHAKLETTMVYCSVD 316 >gi|145321085|gb|ABP63570.1| integrase [Pseudomonas putida] Length = 297 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 69/159 (43%), Gaps = 37/159 (23%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207 LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198 Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 +A + F + + P +R + FQ Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283 R ++ G+ T HTLRHSFAT LL +G D+R++ Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTV 297 >gi|118581964|ref|YP_903214.1| phage integrase family protein [Pelobacter propionicus DSM 2379] gi|118504674|gb|ABL01157.1| phage integrase family protein [Pelobacter propionicus DSM 2379] Length = 402 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 24/174 (13%) Query: 158 AILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 A L +L G R E +SL +N+ +D++ + K + R V L ++ I Sbjct: 238 AALRMLLYTGCRREEIMSLRWENVRLDEERIFLPKTKNGRSRTVHLNARAKEVIQ----- 292 Query: 217 CPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYLGLPLSTTA------HTLR 266 +L + RG P G + YI LR+ H LR Sbjct: 293 -----DLQARKDQEDRTRGSEYVFPSRQGTKKGYIYDLRKPFEKACLNAGIDNFRIHDLR 347 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS---KNGGDWMMEIYDQT 317 H+FA+ +S+G DL ++Q +LGH ++ TQ Y ++N+ K + + E++D+ Sbjct: 348 HTFASMAVSSGADLYAVQRLLGHQDIAMTQRYAHLNADDLKKATEGVSEMFDRA 401 >gi|327402450|ref|YP_004343288.1| integrase family protein [Fluviicola taffensis DSM 16823] gi|327317958|gb|AEA42450.1| integrase family protein [Fluviicola taffensis DSM 16823] Length = 404 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 74/169 (43%), Gaps = 20/169 (11%) Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-- 217 ++ Y GLRIS+ L L + D I+ G +I I +P++ I+E Y+L Sbjct: 242 VFAAYSGGLRISDILQLQWIHFDDSHINFTIKKTGSQISIK--IPNIALNIIEKYNLTQS 299 Query: 218 ----------PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 P D L + + I V + ++ L + + + + H RH Sbjct: 300 EKTSYIFPMLPEDTYLRDAIGQDKAISSAT---AVINKNLKTLAKLAKIEKNISFHISRH 356 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN-VNSKNGGDWMMEIYD 315 ++AT L G + + ++GH + TQIY VNS+ D M+I++ Sbjct: 357 TWATRALRKGMSIDKVSKLMGHSAIKETQIYAKIVNSE--LDKAMDIFN 403 >gi|312865168|ref|ZP_07725396.1| site-specific tyrosine recombinase XerS [Streptococcus downei F0415] gi|311099279|gb|EFQ57495.1| site-specific tyrosine recombinase XerS [Streptococcus downei F0415] Length = 356 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 74/313 (23%), Positives = 125/313 (39%), Gaps = 51/313 (16%) Query: 35 TLQSYECDTRQFLIFL--AFYTEEK----ITIQTIRQLSYTEIRAFISKRRTQK------ 82 TL Y + R+F +L A T+ K I +Q + LS ++ AFI R + Sbjct: 37 TLYEYLKEYRRFFEWLMDADLTDAKKLADIPLQVLEHLSKKDMEAFILYLRERPSLNTYS 96 Query: 83 ----IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL--------PRALN 130 + ++ R+LS + S KYL + RN+ K + RA N Sbjct: 97 TKNGVSQTTINRTLSALSSLYKYLTEEVENDNGEPYFYRNVMKKVATKKKKETLAARAEN 156 Query: 131 EKQALTLVDNVLLHTSHETKWIDA---------------RNSAILYLLYGCGLRISEALS 175 KQ L L D + + K + R+ AI+ LL G+R+SEA++ Sbjct: 157 IKQKLFLGDETMEFLDYVDKEYEGKLSNRAKSSFRKNKERDLAIIALLLASGVRLSEAVN 216 Query: 176 LTPQNIMDDQSTLRIQGKG---DKIRIV----PLLPSVRKAILEYYDLCPFDLNLNIQLP 228 L +++ + + + KG D + + P L + K Y DL L L Sbjct: 217 LDMKDVNLNMMVIEVTRKGGKRDSVNVASFAKPYLEAYLKVRKSRYKAEKGDLALF--LS 274 Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288 +RG+ + ++ ++ + + + + T H LRH+ AT L + LG Sbjct: 275 EYRGVPNR-IDASSIEKMVGKYSQ--DFKIRVTPHKLRHTLATRLYDATKSQVLVSHQLG 331 Query: 289 HFRLSTTQIYTNV 301 H T +YT++ Sbjct: 332 HASTQVTDLYTHI 344 >gi|153005656|ref|YP_001379981.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5] gi|152029229|gb|ABS26997.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5] Length = 451 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 42/174 (24%), Positives = 75/174 (43%), Gaps = 38/174 (21%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ----------GKGDKIRIVP 201 ID R ++ L GLR E ++L ++ + T+ +Q KG + R +P Sbjct: 223 IDPRIELLVLLGGDAGLRRGETIALEWTDVDLRRRTVHVQRSSWNGHVTLPKGGRSRRLP 282 Query: 202 LLPSVRKAI----------LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 L + +A+ + YYD N I++ ++++ + Sbjct: 283 LTERLAEALRSHRHLKGPRVLYYDGGASPTNKEIRM------------------WVQRAQ 324 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 R LP + H LRH+F +HL G ++IQ + GH L+TTQ Y +++ + Sbjct: 325 RRAVLPATGAYHILRHTFCSHLAMQGATAKAIQELAGHQDLTTTQRYMHLSPAH 378 >gi|167761899|ref|ZP_02434026.1| hypothetical protein BACSTE_00242 [Bacteroides stercoris ATCC 43183] gi|167700269|gb|EDS16848.1| hypothetical protein BACSTE_00242 [Bacteroides stercoris ATCC 43183] Length = 333 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 50/156 (32%), Positives = 71/156 (45%), Gaps = 37/156 (23%) Query: 163 LYGC--GLRISEALSLTPQN--IMDDQS-TLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 L+ C GLRIS+ L+L ++ I DQ LRI+ + K + LP +A Y+LC Sbjct: 190 LFACLTGLRISDILNLQWEDFTIAPDQGYCLRIRTQ--KTQTEATLPISYEA----YELC 243 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY--------LGLPLSTTAHTLRHSF 269 G P VF+ R + Y G+ T H RHS+ Sbjct: 244 -----------------GTPGTGKVFKDLKRSMINYPLKSWLKKAGITKPITFHGFRHSY 286 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTN-VNSK 304 A +S G D+ ++ +L H +STTQIY + VNSK Sbjct: 287 AVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSK 322 >gi|146284649|ref|YP_001165602.1| phage integrase family protein [Enterobacter sp. 638] gi|145320782|gb|ABP62928.1| phage integrase family protein [Enterobacter sp. 638] Length = 257 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 187 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 230 >gi|301647508|ref|ZP_07247310.1| site-specific recombinase, phage integrase family [Escherichia coli MS 146-1] gi|301074355|gb|EFK89161.1| site-specific recombinase, phage integrase family [Escherichia coli MS 146-1] Length = 262 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 191 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 234 >gi|291515632|emb|CBK64842.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 417 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 70/300 (23%), Positives = 128/300 (42%), Gaps = 31/300 (10%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTI--RQLSYTEI 71 + +ER N ++ L + + S TLQ + R+ + Y +Q I R + Y + Sbjct: 127 IFRERLNKMEQL-VGKEYSPATLQKF----REVFAHVERYIRTSYNMQDIPIRSVDYRFV 181 Query: 72 RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131 + F Q + ++ + + ++ + + K + + R LK+ L E Sbjct: 182 KQFEEALIVQGLKAITINKIMQRVRQMVTFAFKCNYIQQDPFVEYRPLKERKRLVFLTQE 241 Query: 132 KQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTL 188 + + L H K ++ + L+ +Y GL EA +L P++I D ++ + Sbjct: 242 EL------HKLEHHHFAQKRLETVKNIYLFSVY-TGLAYHEAQALQPKHITKGFDGRNWI 294 Query: 189 R-IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 ++ K D+ VPLLP K I + + D + + I + +N Y+ Sbjct: 295 TLVRQKTDREVSVPLLPQAEKLIAWFREFGSTDDYIQPR------ISNQKVNS-----YL 343 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSKN 305 R++ +G+ T HT R +FAT LL N + + +LGH +S TQ Y V +KN Sbjct: 344 REIADVVGIDKKLTHHTARKTFATTILLYNDVPIEVVSKLLGHSNISVTQHSYAQVLNKN 403 >gi|268611921|ref|ZP_06145648.1| hypothetical protein RflaF_20741 [Ruminococcus flavefaciens FD-1] Length = 310 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 16/149 (10%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEY 213 ++ L+ G+R SEA+++TP + TL + D P SVRK L++ Sbjct: 140 LILLIAKTGMRFSEAIAVTPVDFDFTHQTLSVNKTWDYKGEGGFQPTKNKSSVRKIRLDW 199 Query: 214 YDLCPFDL---NLNIQLPLFRGIRGKPLNP---GVFQRYIRQLRRYLGLPLSTTAHTLRH 267 + F LN P+F K N V +R+ + + G+P + + H LRH Sbjct: 200 QTVGQFYAIVRELNDTAPIFVSKEKKIYNSTLNDVLERHCKAV----GIP-TISVHGLRH 254 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + A+ LL +G + S+ LGH ++TTQ Sbjct: 255 THASLLLFDGVSIASVAQRLGHSSINTTQ 283 >gi|322420262|ref|YP_004199485.1| integrase family protein [Geobacter sp. M18] gi|320126649|gb|ADW14209.1| integrase family protein [Geobacter sp. M18] Length = 340 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 54/237 (22%), Positives = 110/237 (46%), Gaps = 30/237 (12%) Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 +R I K K+ ++ R L +K+ L+Y ++ E + ++++ K+ R L+ Sbjct: 108 VRKIIFKLEATKVKSATVNRYLEVLKTILRYKRQ-----EWDFIHLK--KQPKGRIRVLS 160 Query: 131 EKQALTLVDNVLLHTSHETK-WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 + + + +L T H ++ + + ++ +L G R+SE L+L ++ D + + Sbjct: 161 KPEEDKAI-RLLRETDHCSRRHFYPQVADLVEILLDTGCRLSEVLNLPYDDVNFDTNLIS 219 Query: 190 IQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ--RY 246 I KGD+ R +P+ VR+ + E + + KP + ++Q + Sbjct: 220 IWINKGDRPRSIPMTYRVRRILQERQ----------------KTNKKKPFSVTIYQAGKA 263 Query: 247 IRQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +R+ + L T H LRH+ AT L++ G DL ++ LGH + T+ Y ++ Sbjct: 264 WAWVRKEMKLERDTEFVLHALRHTCATRLVNKGVDLYVVKEWLGHSSIQVTERYAHL 320 >gi|253563508|ref|ZP_04840965.1| mobilizable transposon [Bacteroides sp. 3_2_5] gi|251947284|gb|EES87566.1| mobilizable transposon [Bacteroides sp. 3_2_5] Length = 347 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 81/309 (26%), Positives = 118/309 (38%), Gaps = 88/309 (28%) Query: 43 TRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102 T+Q FLA++ + Q Y F+ + T GD ++ K F +YL Sbjct: 69 TKQKADFLAYFKKMCRNKDQKWQFVYQHFYNFVKGQCT--FGDVNVDLC----KKFREYL 122 Query: 103 KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW----------- 151 LN + LK SN P +LN LL ++ KW Sbjct: 123 -----------LNAKQLKHSNR-PMSLNSASGYYSTFRGLLKIAYRDKWFRENINDYLDK 170 Query: 152 IDARNSAILYL----------------------LYGC--GLRISEALSLTPQN--IMDDQ 185 I+ ++ YL L+ C GLRIS+ L+L ++ I DQ Sbjct: 171 IEPQDVKKEYLTLNEVKQLAATPCDIPVLKAASLFACLTGLRISDILNLQWEDFTIAPDQ 230 Query: 186 S-TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 LRI+ + K + LP +A Y+LC G P VF+ Sbjct: 231 GYCLRIRTQ--KTQTEATLPISYEA----YELC-----------------GTPGTGKVFK 267 Query: 245 RYIRQLRRY--------LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 R + Y G+ T H RHS+A +S G D+ ++ +L H +STTQ Sbjct: 268 DLKRSMINYPLKSWLKKAGITKPITFHGFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQ 327 Query: 297 IYTN-VNSK 304 IY + VNSK Sbjct: 328 IYADLVNSK 336 >gi|256811516|ref|YP_003128885.1| integrase family protein [Methanocaldococcus fervens AG86] gi|256794716|gb|ACV25385.1| integrase family protein [Methanocaldococcus fervens AG86] Length = 330 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 74/153 (48%), Gaps = 10/153 (6%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEY 213 R++ I+ LL+ G R+SE L+L ++ D +I+ K + R V + + +Y Sbjct: 163 RDALIIRLLWDTGCRVSEILNLKYGDVDLDNGIFKIRNTKTHEERTVVCSSDTLELLRDY 222 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLN----PGVFQRYIRQLRRYLGLPLS--TTAHTLRH 267 F++ LF+ +GK + VF+R + +L+ +P + H++RH Sbjct: 223 ---VQFNVRQGSDDYLFQNSQGKKVRKEWISEVFRRAVNELKEEGKIPKNKRIVIHSIRH 279 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 A LL+ G + ++ LGH ++TT IY + Sbjct: 280 GRAVDLLNKGVPIDIVKEYLGHRSMNTTLIYAH 312 >gi|300861379|ref|ZP_07107465.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TUSoD Ef11] gi|300849171|gb|EFK76922.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TUSoD Ef11] gi|315145852|gb|EFT89868.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX2141] Length = 309 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 13/147 (8%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV------RKAILE 212 + L+ GLR SEAL+LTP++ + + I+ + S RK ++ Sbjct: 141 FILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKNPTGFFQSTKNESSKRKVQID 200 Query: 213 YYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 + F N+ P+F +RG+ N + R ++ L + +P+ T H+LRH+ Sbjct: 201 WQTAMQFSQLIRNMPPMEPIF--VRGRVFNSTINSR-LKVLCKRAQIPV-ITVHSLRHTH 256 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ 296 A+ LL G + S+ + LGH ++TTQ Sbjct: 257 ASLLLFAGVSIASVATRLGHSSMTTTQ 283 >gi|189467538|ref|ZP_03016323.1| hypothetical protein BACINT_03928 [Bacteroides intestinalis DSM 17393] gi|189435802|gb|EDV04787.1| hypothetical protein BACINT_03928 [Bacteroides intestinalis DSM 17393] Length = 333 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 50/156 (32%), Positives = 71/156 (45%), Gaps = 37/156 (23%) Query: 163 LYGC--GLRISEALSLTPQN--IMDDQS-TLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 L+ C GLRIS+ L+L ++ I DQ LRI+ + K + LP +A Y+LC Sbjct: 190 LFACLTGLRISDILNLQWEDFTIAPDQGYCLRIRTQ--KTQTEATLPISYEA----YELC 243 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY--------LGLPLSTTAHTLRHSF 269 G P VF+ R + Y G+ T H RHS+ Sbjct: 244 -----------------GTPGTGKVFKDLKRSMINYPLKSWLKKAGITKPITFHGFRHSY 286 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTN-VNSK 304 A +S G D+ ++ +L H +STTQIY + VNSK Sbjct: 287 AVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSK 322 >gi|167752569|ref|ZP_02424696.1| hypothetical protein ALIPUT_00823 [Alistipes putredinis DSM 17216] gi|167659638|gb|EDS03768.1| hypothetical protein ALIPUT_00823 [Alistipes putredinis DSM 17216] Length = 409 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 72/151 (47%), Gaps = 22/151 (14%) Query: 166 CGLRISEALSLTPQNIMDDQS------TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219 CGL S+ +L +NI T R++ D VPLL + K IL+ Y Sbjct: 253 CGLAYSDVANLRQENIQKSFDGNLWIITKRVKTNTD--VNVPLL-DIPKMILKKYKGKLP 309 Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGG 278 D + LP+ I + LN Y++++ G+ + T H RH+FAT LS G Sbjct: 310 DGKI---LPV---ISNQKLNA-----YLKEIADICGIKKNLTFHLARHTFATTTTLSKGV 358 Query: 279 DLRSIQSILGHFRLSTTQIYTNV-NSKNGGD 308 + ++ +LGH + TTQIY + NSK G D Sbjct: 359 PIETVSKMLGHTNIETTQIYARITNSKIGSD 389 >gi|297374655|emb|CBL42942.1| phage integrase family protein [Candidatus Magnetobacterium bavaricum] Length = 324 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 94/211 (44%), Gaps = 32/211 (15%) Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 IK+ + +R+ + + LK N++PR L+E Q + +V T D Sbjct: 130 IKAAFSWAVEREYLKTNPFAGYKQLKYQNTIPRFLSENQ----IQDVY------TAIGDN 179 Query: 155 RNSAILYLLY-GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213 + +++ LY G R +E ++ +I D + K + R +P + KAIL Sbjct: 180 KTYRLIFALYIHTGARRNEIQNIKWSDIKPDGIIFE-KTKTYRSRKIPTSKGL-KAILSE 237 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLN--PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 YD RGI G+ N P ++ + G+ H LRH+FA+ Sbjct: 238 YD---------------RGI-GQIFNITPSHISHVMKDYFKKAGIG-HFKLHDLRHTFAS 280 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 L+ G DLR+IQ +LGH STT IY +++ Sbjct: 281 LLVQAGIDLRTIQVLLGHTSYSTTLIYAHLS 311 >gi|218281982|ref|ZP_03488300.1| hypothetical protein EUBIFOR_00869 [Eubacterium biforme DSM 3989] gi|218217038|gb|EEC90576.1| hypothetical protein EUBIFOR_00869 [Eubacterium biforme DSM 3989] Length = 307 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%) Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 KP+ P ++ Y ++L + L +P H LRHSFAT + + D +++ +LGH +STT Sbjct: 226 KPIEPRTYRNYYKKLCKQLDIP-ELKFHGLRHSFATRCIESKADYKTVSVLLGHSNISTT 284 >gi|90962769|ref|YP_536684.1| site-specific tyrosine recombinase XerS [Lactobacillus salivarius UCC118] gi|301300342|ref|ZP_07206546.1| site-specific tyrosine recombinase XerS [Lactobacillus salivarius ACS-116-V-Col5a] gi|90821963|gb|ABE00601.1| Integrase [Lactobacillus salivarius UCC118] gi|300852026|gb|EFK79706.1| site-specific tyrosine recombinase XerS [Lactobacillus salivarius ACS-116-V-Col5a] Length = 365 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 75/160 (46%), Gaps = 6/160 (3%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ AI L+ G GLR+SE +++ +++ + + + + KG+K V + + + Y Sbjct: 205 RDLAINALMLGSGLRLSEVVNINIEDLDFENNRVAVLRKGNKKDSVRIAAFAMEYLANYR 264 Query: 215 DLCPFDLNLN-IQLPLFRGI-RG--KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 D+ + + F I RG K + ++ + + + G + T H LRH+ A Sbjct: 265 DIRASRYRADKYEKAFFLAISRGGSKRITGSAIEKMVSKYSK--GFKVRVTPHKLRHTLA 322 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 T L +L LGH +TT +YT++++ D + Sbjct: 323 TRLYKQTNNLVLTAQQLGHSSTATTTLYTHIDNDETTDAL 362 >gi|294673817|ref|YP_003574433.1| site-specific recombinase, phage integrase family [Prevotella ruminicola 23] gi|294472730|gb|ADE82119.1| site-specific recombinase, phage integrase family [Prevotella ruminicola 23] Length = 409 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 34/58 (58%) Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 ++ + + G+ +AH RH FAT L+NG + S+ +LGH + TTQIY + +K Sbjct: 329 LKTVMKECGIDKPISAHCARHGFATMALTNGMPIESVSRVLGHTNIVTTQIYARITTK 386 >gi|293369636|ref|ZP_06616214.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292635340|gb|EFF53854.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 409 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 72/151 (47%), Gaps = 22/151 (14%) Query: 166 CGLRISEALSLTPQNIMDDQS------TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219 CGL S+ +L +NI T R++ D VPLL + K IL+ Y Sbjct: 253 CGLAYSDVANLRQENIQKSFDGNLWIITKRVKTNTD--VNVPLL-DIPKMILKKYKGKLP 309 Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGG 278 D + LP+ I + LN Y++++ G+ + T H RH+FAT LS G Sbjct: 310 DGKI---LPV---ISNQKLNA-----YLKEIADICGIKKNLTFHLARHTFATTTTLSKGV 358 Query: 279 DLRSIQSILGHFRLSTTQIYTNV-NSKNGGD 308 + ++ +LGH + TTQIY + NSK G D Sbjct: 359 PIETVSKMLGHTNIETTQIYARITNSKIGSD 389 >gi|148727179|ref|YP_001285625.1| putative integrase [Aeromonas phage phiO18P] gi|110349314|gb|ABG73202.1| putative integrase [Aeromonas phage phiO18P] Length = 350 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 29/146 (19%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE----YY 214 I+ L G R SE ++ I + T + KG + R VP+ P + + + Sbjct: 199 IVMLCLSTGARWSEIEKVSRSQIGMGRITF-TKTKGKRNRTVPVAPWLLAMLPRRTGRLF 257 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 D C D F++ IR R + LP + H LRH+FA+H + Sbjct: 258 DDCYAD----------------------FEKAIR--RAGIKLPAGQSTHVLRHTFASHFM 293 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTN 300 NGG++ +Q ILGH + T Y + Sbjct: 294 MNGGNILVLQRILGHTDIKMTMRYAH 319 >gi|206563503|ref|YP_002234266.1| integrase [Burkholderia cenocepacia J2315] gi|198039543|emb|CAR55510.1| integrase [Burkholderia cenocepacia J2315] Length = 420 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 73/183 (39%), Gaps = 34/183 (18%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIM-------DDQSTLRIQGKGDKIRIVPLLPSVR 207 R + LLY GLRI+EA T ++ L + GKG + R+VP + Sbjct: 230 RARWLFTLLYLGGLRITEAADTTMGRFFCRRDADGHERWWLDVTGKGGRQRLVPATDEMM 289 Query: 208 KAILEY-----YDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL--- 258 + Y P D + LP+ G KPL R ++Q+ R+ L Sbjct: 290 TELARYRRAHGLPALPVDGEPTPLVLPV--GQARKPLTRAALHRIVKQVFRHAADRLRAN 347 Query: 259 ------------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNG 306 +AH LRHS +H+ DLR ++ LGH L+TT Y + + Sbjct: 348 GEAGEHAARVLEQASAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHADD--- 404 Query: 307 GDW 309 DW Sbjct: 405 -DW 406 >gi|34540643|ref|NP_905122.1| mobilizable transposon, int protein [Porphyromonas gingivalis W83] gi|34396957|gb|AAQ66021.1| mobilizable transposon, int protein [Porphyromonas gingivalis W83] Length = 367 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 73/148 (49%), Gaps = 21/148 (14%) Query: 163 LYGC--GLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 L+ C GLRIS+ L+L ++ D +RI+ + K LP +A Y+LC Sbjct: 224 LFSCLTGLRISDILNLRWEDFTLAPDQGYCIRIRTQ--KTSTEATLPISYEA----YELC 277 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 + + L R + PL +++I+Q G+ T H RHS+A +S G Sbjct: 278 GEPSSGKVFKGLQRSMINYPL-----KKWIKQA----GIMKHITFHCFRHSYAVIQISLG 328 Query: 278 GDLRSIQSILGHFRLSTTQIYTN-VNSK 304 D+ ++ +L H +STTQIY + VNSK Sbjct: 329 TDIYTVSKMLTHKNVSTTQIYADLVNSK 356 >gi|315171544|gb|EFU15561.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX1342] Length = 309 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 13/147 (8%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV------RKAILE 212 + L+ GLR SEAL+LTP++ + + I+ + S RK ++ Sbjct: 141 FILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKNPTGFFQSTKNESSKRKVQID 200 Query: 213 YYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 + F N+ P+F +RG+ N + R ++ L + +P+ T H+LRH+ Sbjct: 201 WQTAMQFSQLIRNMPPMEPIF--VRGRVFNSTINSR-LKVLCKRAQIPV-ITVHSLRHTH 256 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ 296 A+ LL G + S+ + LGH ++TTQ Sbjct: 257 ASLLLFAGVSIASVATRLGHSSMTTTQ 283 >gi|312869158|ref|ZP_07729332.1| site-specific tyrosine recombinase XerS [Lactobacillus oris PB013-T2-3] gi|311095404|gb|EFQ53674.1| site-specific tyrosine recombinase XerS [Lactobacillus oris PB013-T2-3] Length = 354 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 63/290 (21%), Positives = 117/290 (40%), Gaps = 37/290 (12%) Query: 58 ITIQTIRQLSYTEIRAFISK-RRTQKIGDR-----SLKRSLSGIKSFLKYLK-------- 103 I+ + + +L +I +I + TQ R S+ RS++ ++S KYL Sbjct: 63 ISTKALEKLRRNDIMLYIDHLKHTQNAQGRLNSPTSINRSINALRSLFKYLTVTADINDG 122 Query: 104 ----------KRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET---- 149 K ++ LN R S+ + R + + + N H + Sbjct: 123 EPYFYRNVMLKIDSLNDTQTLNYRAHTLSSHMYRGQMKFDFINFIQNEYPHKCDKRALPA 182 Query: 150 -KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 K R+ AI+ L+ G G+R+SEA ++ ++ +Q L + KG + VP+ P + Sbjct: 183 FKVNRERDIAIIALILGTGVRVSEAANVNLGDLNINQGLLDVVRKGGQRDSVPIAPWSIQ 242 Query: 209 AILEYYDL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 + +Y + + L ++ G + + +R +++ G PL T H Sbjct: 243 YVQDYLAIRAQRYHALKKDTAFFLTVYHG-ETRRMTANAIERMVKKYSTAFGHPL--TPH 299 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 LRH+ A+ + D + LG S T +YT+V + + EI Sbjct: 300 KLRHTLASEMYEVTKDQVLVAQQLGQKGTSATDLYTHVGVTQQREALDEI 349 >gi|294647494|ref|ZP_06725075.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294807460|ref|ZP_06766263.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|317476756|ref|ZP_07935999.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|292637154|gb|EFF55591.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294445355|gb|EFG14019.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|316906931|gb|EFV28642.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 409 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 72/151 (47%), Gaps = 22/151 (14%) Query: 166 CGLRISEALSLTPQNIMDDQS------TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219 CGL S+ +L +NI T R++ D VPLL + K IL+ Y Sbjct: 253 CGLAYSDVANLRQENIQKSFDGNLWIITKRVKTNTD--VNVPLL-DIPKMILKKYKGKLP 309 Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGG 278 D + LP+ I + LN Y++++ G+ + T H RH+FAT LS G Sbjct: 310 DGKI---LPV---ISNQKLNA-----YLKEIADICGIKKNLTFHLARHTFATTTTLSKGV 358 Query: 279 DLRSIQSILGHFRLSTTQIYTNV-NSKNGGD 308 + ++ +LGH + TTQIY + NSK G D Sbjct: 359 PIETVSKMLGHTNIETTQIYARITNSKIGSD 389 >gi|256960370|ref|ZP_05564541.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|293384343|ref|ZP_06630228.1| DNA integration/recombination/inversion protein [Enterococcus faecalis R712] gi|293388421|ref|ZP_06632929.1| DNA integration/recombination/inversion protein [Enterococcus faecalis S613] gi|312908543|ref|ZP_07767487.1| site-specific recombinase, phage integrase family [Enterococcus faecalis DAPTO 512] gi|312908987|ref|ZP_07767849.1| site-specific recombinase, phage integrase family [Enterococcus faecalis DAPTO 516] gi|256950866|gb|EEU67498.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|291078335|gb|EFE15699.1| DNA integration/recombination/inversion protein [Enterococcus faecalis R712] gi|291082196|gb|EFE19159.1| DNA integration/recombination/inversion protein [Enterococcus faecalis S613] gi|310625510|gb|EFQ08793.1| site-specific recombinase, phage integrase family [Enterococcus faecalis DAPTO 512] gi|311290687|gb|EFQ69243.1| site-specific recombinase, phage integrase family [Enterococcus faecalis DAPTO 516] gi|315169211|gb|EFU13228.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX1341] Length = 309 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 13/147 (8%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV------RKAILE 212 + L+ GLR SEAL+LTP++ + + I+ + S RK ++ Sbjct: 141 FILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKNPTGFFQSTKNESSKRKVQID 200 Query: 213 YYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 + F N+ P+F ++G+ N + R ++ L R +P+ T H+LRH+ Sbjct: 201 WQTAMQFSQLIRNMPPMEPIF--VKGRVFNSTINSR-LKVLCRRAQIPV-ITVHSLRHTH 256 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ 296 A+ LL G + S+ + LGH ++TTQ Sbjct: 257 ASLLLFAGVSIASVATRLGHSSMTTTQ 283 >gi|91206303|ref|YP_538657.1| resolvase [Escherichia coli UTI89] gi|91075754|gb|ABE10634.1| resolvase [Escherichia coli UTI89] Length = 269 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 40/182 (21%) Query: 153 DARNSAILYLLYGCGLRISEALSLT-------PQNIMDDQSTL--------RIQGK---G 194 D R +L L+ G RI+EAL+LT P +TL R G+ G Sbjct: 66 DLRRKMLLATLWNTGARINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAGRTPAG 125 Query: 195 DKI-RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLR 251 + R+VPL S + L+ + +++PL R + G+ +++ R +R Sbjct: 126 QQTHRLVPLSDSWYVSQLQ-------TMVATLKIPLERRNKRTGRTEKARIWEVTDRTVR 178 Query: 252 RYLG------------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 ++G + T HT RHS A H+L G L+ +QS++GH +S+T++YT Sbjct: 179 TWIGEAVAAAATDGVTFSVPVTPHTFRHSDAMHMLYAGIPLKVLQSLMGHKSISSTEVYT 238 Query: 300 NV 301 V Sbjct: 239 KV 240 >gi|260600009|ref|YP_003212747.1| Resolvase [Cronobacter turicensis z3032] gi|260219356|emb|CBA34708.1| Resolvase [Cronobacter turicensis z3032] Length = 284 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 214 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSVSSTEVYTKV 257 >gi|295086221|emb|CBK67744.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 213 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 20/144 (13%) Query: 163 LYGC--GLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 L+ C GLRIS+ + L +NI+ D + I K K R +LP +A+ LC Sbjct: 70 LFSCLTGLRISDIIRLQWENIIRGADGGWCMHIVTK--KTRTEAVLPLSDEALA----LC 123 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 + F+G + + Y++ + G+ T H RH++AT L+ G Sbjct: 124 GERSTGQV----FKG-----MTQALLPLYLKDWIKSAGITKHITFHCFRHTYATLQLAAG 174 Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301 DL +I +L H ++TTQ+Y +V Sbjct: 175 TDLYTISKMLTHSNVATTQVYADV 198 >gi|325499381|gb|EGC97240.1| hypothetical protein ECD227_3478 [Escherichia fergusonii ECD227] Length = 326 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 22/144 (15%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 + L G R +E +L P I + + T ++ K K RIVP+ + K + E Sbjct: 184 VALLCLSTGGRWTEVATLKPAQITNCRVTF-LKTKNGKKRIVPISEELEKKVKEEASAKL 242 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNG 277 F ++ ++++ LRR +P + H LRH+FA+H + NG Sbjct: 243 FKVD--------------------YEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNG 282 Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301 G++ ++Q ILGH + T Y ++ Sbjct: 283 GNIIALQQILGHASIQQTMAYAHL 306 >gi|322383160|ref|ZP_08056982.1| integrase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152703|gb|EFX45334.1| integrase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 360 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 20/165 (12%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213 R++ I+ L+ GLR+SE ++LT ++ + T+ + KG+ R+ +E Sbjct: 190 VRDACIVSLILHSGLRVSEVVNLTLDDLDIKKKTIYVFRKGNNDGSFKTRVYFRQEAME- 248 Query: 214 YDLCPF-------------DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 DL + + L + +P R GK + Q + + + G P Sbjct: 249 -DLSRYLEIRETRYRPPKKEKALFLTIPNGRS-EGKMMTKRAMQEMVLKYAKRFGKPY-L 305 Query: 261 TAHTLRHSFAT-HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + H LRHSFAT + L N DL Q LGH TTQIY ++ K Sbjct: 306 SVHKLRHSFATDYYLQN--DLYKTQEQLGHASSDTTQIYAHLTDK 348 >gi|298384323|ref|ZP_06993883.1| mobilizable transposon, int protein [Bacteroides sp. 1_1_14] gi|298262602|gb|EFI05466.1| mobilizable transposon, int protein [Bacteroides sp. 1_1_14] Length = 347 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 50/156 (32%), Positives = 71/156 (45%), Gaps = 37/156 (23%) Query: 163 LYGC--GLRISEALSLTPQN--IMDDQS-TLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 L+ C GLRIS+ L+L ++ I DQ LRI+ + K + LP +A Y+LC Sbjct: 204 LFACLTGLRISDILNLQWEDFTIAPDQGYCLRIRTQ--KTQTEATLPISYEA----YELC 257 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY--------LGLPLSTTAHTLRHSF 269 G P VF+ R + Y G+ T H RHS+ Sbjct: 258 -----------------GTPGTGKVFKDLKRSMINYPLKSWLKKAGITKPITFHGFRHSY 300 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTN-VNSK 304 A +S G D+ ++ +L H +STTQIY + VNSK Sbjct: 301 AVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSK 336 >gi|296448773|ref|ZP_06890625.1| integrase family protein [Methylosinus trichosporium OB3b] gi|296253710|gb|EFH00885.1| integrase family protein [Methylosinus trichosporium OB3b] Length = 316 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 66/152 (43%), Gaps = 9/152 (5%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 I L GLR +EA L ++ D + + ++GKG + +PL P AIL Sbjct: 127 IARFLIITGLRRAEACRLAWSDVDLDGARMVVRGKGGTVDTLPL-PDAAIAILRAESGRH 185 Query: 219 FDLNLNIQLPLFRGIRGK-----PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 +L Q+ G GK P+ P + RR L H LRH+ AT L Sbjct: 186 AELVFTYQVRHRWG--GKIGARVPIEPDTLGTAFWRARRAAKL-TDLRLHDLRHTAATRL 242 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + G+L + Q L H R++TT Y +V + Sbjct: 243 VRATGNLAAAQKALRHRRITTTMRYAHVTEDD 274 >gi|295090532|emb|CBK76639.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum K10] Length = 307 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 47/225 (20%), Positives = 95/225 (42%), Gaps = 20/225 (8%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 + + S+L++ + +S L+M +++ N L ++E + N LL + Sbjct: 101 IRALNSYLEFTR-----AKSQKLSMVKIQQRNYLENVISEAD-YEYLKNCLLRDEKYLYY 154 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211 I+ + G R+SE + ++I + L KG+K+R + + ++ + L Sbjct: 155 F------IIRFMAATGARVSEVIQFQAEDIRNGYKDL--YSKGNKVRRIYIPKALHQDAL 206 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFA 270 + + +F GK + P + ++ L G+ P H+ RH FA Sbjct: 207 RWLEASKIQSG-----DIFLNRFGKRITPAGIRGQLKVLALNYGINPDVVYPHSFRHRFA 261 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + GD+ + +LGH + TT+IY +S D + ++ D Sbjct: 262 KSFIEKCGDISLLSDLLGHRNIETTRIYLRRSSSEQYDIINKVVD 306 >gi|227891981|ref|ZP_04009786.1| site-specific tyrosine recombinase XerS [Lactobacillus salivarius ATCC 11741] gi|227866185|gb|EEJ73606.1| site-specific tyrosine recombinase XerS [Lactobacillus salivarius ATCC 11741] Length = 365 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 75/160 (46%), Gaps = 6/160 (3%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ AI L+ G GLR+SE +++ +++ + + + + KG+K V + + + Y Sbjct: 205 RDLAINALMLGSGLRLSEVVNINIEDLDFENNRVAVLRKGNKKDSVRIAAFAMEYLANYR 264 Query: 215 DLCPFDLNLN-IQLPLFRGI-RG--KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 D+ + + F I RG K + ++ + + + G + T H LRH+ A Sbjct: 265 DIRASRYRADKYEKAFFLAISRGGSKRITGSAIEKMVSKYSK--GFKVRVTPHKLRHTLA 322 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWM 310 T L +L LGH +TT +YT++++ D + Sbjct: 323 TRLYKQTNNLVLTAQQLGHSSTATTTLYTHIDNDETTDAL 362 >gi|255692131|ref|ZP_05415806.1| integrase [Bacteroides finegoldii DSM 17565] gi|260622150|gb|EEX45021.1| integrase [Bacteroides finegoldii DSM 17565] Length = 409 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 72/151 (47%), Gaps = 22/151 (14%) Query: 166 CGLRISEALSLTPQNIMDDQS------TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219 CGL S+ +L +NI T R++ D VPLL + K IL+ Y Sbjct: 253 CGLAYSDVANLRQENIQKSFDGNLWIITKRVKTNTD--VNVPLL-DIPKMILKKYKGKLP 309 Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGG 278 D + LP+ I + LN Y++++ G+ + T H RH+FAT LS G Sbjct: 310 DGKI---LPV---ISNQKLNA-----YLKEIADICGIKKNLTFHLARHTFATTTTLSKGV 358 Query: 279 DLRSIQSILGHFRLSTTQIYTNV-NSKNGGD 308 + ++ +LGH + TTQIY + NSK G D Sbjct: 359 PIETVSKMLGHTNIETTQIYARITNSKIGSD 389 >gi|163754475|ref|ZP_02161597.1| Tn5520-like integrase (transfer factor) [Kordia algicida OT-1] gi|161325416|gb|EDP96743.1| Tn5520-like integrase (transfer factor) [Kordia algicida OT-1] Length = 410 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 48/187 (25%), Positives = 91/187 (48%), Gaps = 18/187 (9%) Query: 121 KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 KS + RAL+ K+ + L++++ T +DA+N +++ Y G+ + + L +N Sbjct: 207 KSKGIKRALSRKE-MKLMESI--DTIKNPNLLDAKN-YMVFSYYSGGMNFIDMMKLKWEN 262 Query: 181 IMDDQSTL-RIQGKGDKIRIVPLLPSVRKAILEYYD--------LCPFDLNLNIQLPLFR 231 I +D+ R + KG+ V +L V+K ++EYY + P L+ ++ Sbjct: 263 IQEDRIVYTRSKTKGN--FTVKMLEPVKK-VVEYYKAQNRPTDYVFPILLSNDLSPIQIE 319 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291 + K L F + ++++ G+ + T++ +RHSFAT+L G I +GH Sbjct: 320 YRKNKTLR--AFNKKLKEIASIQGVKKNVTSYVIRHSFATNLKYAGISSDLISQTMGHHD 377 Query: 292 LSTTQIY 298 +S T Y Sbjct: 378 VSVTNAY 384 >gi|312882545|ref|ZP_07742286.1| integrase [Vibrio caribbenthicus ATCC BAA-2122] gi|309369945|gb|EFP97456.1| integrase [Vibrio caribbenthicus ATCC BAA-2122] Length = 342 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 30/46 (65%) Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 LP H LRH+FA+H + NGGD+ +++ ILGH ++ T Y ++ Sbjct: 263 LPKGQKVHVLRHTFASHFIMNGGDILTLKEILGHCSINQTMTYAHL 308 >gi|169245911|gb|ACA50932.1| site-specific recombinase [Mycobacterium marinum DL240490] Length = 345 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 73/319 (22%), Positives = 124/319 (38%), Gaps = 56/319 (17%) Query: 21 WLQNLEIERGLSKL---TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA-FIS 76 W +R + K T ++Y D + LA + T+ T L+ +RA F Sbjct: 18 WFGEFLADRAIRKPSPHTTKAYRQDFEAVALLLAGGADAISTLPT-NALNKESLRAAFAV 76 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--SLPRALNEKQA 134 T S++R S + +L +N+L+ + +P+AL + Sbjct: 77 YAETHSAA--SIRRCWSTWNTLCTFLYT------ANLLDANPMPAIGRPKVPKALPKSYT 128 Query: 135 LTLVDNVLLH------TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----- 183 V+N++ ++ + W + R+ AI++ GLR E L NI D Sbjct: 129 ADAVNNLIAAIDTDDGSARRSNWPE-RDRAIIFTALLTGLRADE---LIRANIGDIRCNA 184 Query: 184 DQSTLRIQGKGDKIRIVPL------------------LPSVRKAILEYYDLCPFDLNLNI 225 D L + GKG+K R +P +P +RK + F + Sbjct: 185 DGGVLHVSGKGNKDRRIPCDTKLIEMLQRYLQTREDRIPHLRKRSASPDAMGRF----SP 240 Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL----PLSTTAHTLRHSFATHLLSNGGDLR 281 PLF G G+ + G Q I + + G+ H LRH+FAT L + + Sbjct: 241 TAPLFVGSDGERITRGTLQYRILRGFKKAGINNDRAAGALVHGLRHTFATELANANVSVY 300 Query: 282 SIQSILGHFRLSTTQIYTN 300 ++ +LGH + T+Q Y + Sbjct: 301 ALMKLLGHESMVTSQRYVD 319 >gi|325680238|ref|ZP_08159800.1| type I restriction modification DNA specificity domain protein [Ruminococcus albus 8] gi|324108055|gb|EGC02309.1| type I restriction modification DNA specificity domain protein [Ruminococcus albus 8] Length = 528 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 16/149 (10%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEY 213 ++ L+ G+R SEA+++TP + TL + D P SVRK L++ Sbjct: 358 LILLIAKTGMRFSEAIAVTPADFDFTHQTLSVNKTWDYKGEGGFQPTKNKSSVRKIRLDW 417 Query: 214 YDLCPFDL---NLNIQLPLFRGIRGKPLNP---GVFQRYIRQLRRYLGLPLSTTAHTLRH 267 + F LN P+F K N V +R+ + + G+P + + H LRH Sbjct: 418 QTVGQFYAIVRELNDTAPIFVSKEKKIYNSTLNDVLERHCKAV----GIP-TISVHGLRH 472 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + A+ LL +G + S+ LGH ++TTQ Sbjct: 473 THASLLLFDGVSIASVAQRLGHSSINTTQ 501 >gi|301162340|emb|CBW21885.1| putative transposase [Bacteroides fragilis 638R] Length = 409 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 72/151 (47%), Gaps = 22/151 (14%) Query: 166 CGLRISEALSLTPQNIMDDQS------TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219 CGL S+ +L +NI T R++ D VPLL + K IL+ Y Sbjct: 253 CGLAYSDVANLRQENIQKSFDGNLWIITKRVKTNTD--VNVPLL-DIPKMILKKYKGKLP 309 Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGG 278 D + LP+ I + LN Y++++ G+ + T H RH+FAT LS G Sbjct: 310 DGKI---LPV---ISNQKLNA-----YLKEIADICGIKKNLTFHLARHTFATTTTLSKGV 358 Query: 279 DLRSIQSILGHFRLSTTQIYTNV-NSKNGGD 308 + ++ +LGH + TTQIY + NSK G D Sbjct: 359 PIETVSKMLGHTNIETTQIYARITNSKIGSD 389 >gi|294793172|ref|ZP_06758318.1| integrase/recombinase, phage integrase family [Veillonella sp. 6_1_27] gi|294456117|gb|EFG24481.1| integrase/recombinase, phage integrase family [Veillonella sp. 6_1_27] Length = 329 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 8/155 (5%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212 + R+ A++ +L G+R+ E + L +I ++ + GKG K R+V + K L+ Sbjct: 171 EPRDLALIDMLASTGMRVGELVLLNRDDINFEERECVVFGKGSKERMV-YFDARTKIHLQ 229 Query: 213 YYDLCPFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 Y D N LF +R + L G +R +R+L + L + H R + A Sbjct: 230 NYLQERTDDN----PALFVSLRAPHERLQSGGVERRLRELGKKLDIE-KVHPHKFRRTLA 284 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 T + G + +Q +LGH R+ TT Y V N Sbjct: 285 TMAIDKGMPIEQLQQLLGHKRIDTTLQYAMVKQSN 319 >gi|283798863|ref|ZP_06348016.1| site-specific recombinase, phage integrase family [Clostridium sp. M62/1] gi|291073401|gb|EFE10765.1| site-specific recombinase, phage integrase family [Clostridium sp. M62/1] Length = 307 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 47/225 (20%), Positives = 95/225 (42%), Gaps = 20/225 (8%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKW 151 + + S+L++ + +S L+M +++ N L ++E + N LL + Sbjct: 101 IRALNSYLEFTR-----AKSQKLSMVKIQQRNYLENVISEAD-YEYLKNCLLRDEKYLYY 154 Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211 I+ + G R+SE + ++I + L KG+K+R + + ++ + L Sbjct: 155 F------IIRFMAATGARVSEVIQFQAEDIRNGYKDL--YSKGNKVRRIYIPKALHQDAL 206 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFA 270 + + +F GK + P + ++ L G+ P H+ RH FA Sbjct: 207 RWLEASKIQSG-----DIFLNRFGKRITPAGIRGQLKVLALNYGINPDVVYPHSFRHRFA 261 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 + GD+ + +LGH + TT+IY +S D + ++ D Sbjct: 262 KSFIEKCGDISLLSDLLGHRNIETTRIYLRRSSSEQYDIINKVVD 306 >gi|254426414|ref|ZP_05040130.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus sp. PCC 7335] gi|196187828|gb|EDX82794.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus sp. PCC 7335] Length = 339 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 62/270 (22%), Positives = 115/270 (42%), Gaps = 26/270 (9%) Query: 20 NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 +W+ +R + T ++Y R F ++ F + + + + + + Sbjct: 34 DWVDEFLGDREIRPNTKKAYTRQLRGFQVWCEFKH-----WGDVGEADVSRYKEHLKNKP 88 Query: 80 TQ--KIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 T+ KIG S+ ++++ ++SF K+L ++ T + LN+ + + + + + Sbjct: 89 TKAGKIGLSPASVNQAIATLQSFFKWLATKRYITYNPTLNVEKVPAAPTETKDIEVAAVR 148 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD--DQSTLRIQGK 193 L + + E + R++AI LL GLR +E L NI D Q+ + K Sbjct: 149 QLAEGLEYRGQREQ--LSTRDTAIFELLK-HGLRATEVSKL---NIGDYNGQAVQVSKAK 202 Query: 194 GDKIRIVPLLPSVRKAILEYYDLC---PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 VPL P+ R+A+ Y C FD + PLFR + + I ++ Sbjct: 203 WRSDGTVPLAPNARQALDSYLGWCVRKGFDTSSG--EPLFRSLSRNGYGKRLGYWGIYEM 260 Query: 251 RRYLGLPLSTT----AHTLRHSFATHLLSN 276 + LG+ +T H LRH+F T L+ N Sbjct: 261 VKDLGVIAESTENVHPHRLRHTFGTQLVLN 290 >gi|299142941|ref|ZP_07036067.1| site-specific recombinase, phage integrase family [Prevotella oris C735] gi|298575557|gb|EFI47437.1| site-specific recombinase, phage integrase family [Prevotella oris C735] Length = 308 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 19/153 (12%) Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRI----------QGKGDKIRIVPLLPSVRKA 209 +Y+ GLRI E L +I D T+ + +G+ +V P + + Sbjct: 133 IYISLTTGLRIGEICGLMWADINTDTGTITVSRTIERIYIVEGEHKHTELVINTPKTKNS 192 Query: 210 ILEY-------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 E + P +N+ + KP P ++ Y +L ++L +P Sbjct: 193 CREIPMNKELLAMVKPLKKVVNVNFYVLTN-EEKPTEPRTYRNYYHRLMKHLDIPW-LKY 250 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 H LRHSFAT + + D +++ +LGH ++TT Sbjct: 251 HGLRHSFATRCIESNCDYKTVSVLLGHANITTT 283 >gi|260642076|ref|ZP_05414491.2| site-specific recombinase, phage integrase family [Bacteroides finegoldii DSM 17565] gi|260623620|gb|EEX46491.1| site-specific recombinase, phage integrase family [Bacteroides finegoldii DSM 17565] Length = 420 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 14/147 (9%) Query: 162 LLYGC--GLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 L+ C GLR+ + SLT I+ D TL ++ K +K + + +P ++AI C Sbjct: 269 FLFSCFTGLRLGDVRSLTWGKIVKAPDGKTLFVRTKMEKTQKIVNVPLSKEAID-----C 323 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 + N + P+F P +R I + + + T H RH++AT LL+ G Sbjct: 324 -LNPKENNEEPIFM----LPAGTSNIERNIEKWMQDAKITKHITYHCSRHTYATMLLTLG 378 Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSK 304 D+ + +LGH ++TT IY + K Sbjct: 379 ADIYTTSKLLGHSNVNTTSIYAKIVDK 405 >gi|196044897|ref|ZP_03112131.1| phage integrase family protein [Bacillus cereus 03BB108] gi|196024385|gb|EDX63058.1| phage integrase family protein [Bacillus cereus 03BB108] Length = 372 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 15/165 (9%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRI------QGKGDKIRIVPLLP 204 AR+ + LL GLR E + L ++ + + L + +G G K R VPLL Sbjct: 173 ARDYTVFRLLELTGLRSFEIVMLDVKDCRFDLGENGKLHVRYGKGSKGSGYKRRWVPLLD 232 Query: 205 SVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-- 260 + +L++Y ++ P N PLF G L+ + +R+ ++ LG Sbjct: 233 NA-DILLKWYLENIRPLFSKQN-HGPLFYAESGNRLSRDSARSALRRRQKNLGFSEEEIF 290 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + H LRH+FAT G DL +++ +LGH ++TT Y +S + Sbjct: 291 SPHQLRHAFATRQTETGVDLLTLKELLGHVEVATTFNYVKPSSDH 335 >gi|120435029|ref|YP_860715.1| phage integrase family protein [Gramella forsetii KT0803] gi|117577179|emb|CAL65648.1| phage integrase family protein [Gramella forsetii KT0803] Length = 412 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 10/103 (9%) Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 +P+LP + K I+E Y ++ LP+ + + +N YI+++ G+ + Sbjct: 302 IPILP-IAKTIIEKYKDNELLKEKDLVLPV---LSNQKMNA-----YIKEIANLAGISKN 352 Query: 260 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T H RH+FAT + L+NG + S+ +LGH L TTQ Y + Sbjct: 353 LTFHLARHTFATTVTLTNGVPIESVSKMLGHTNLKTTQHYAKI 395 >gi|138557|sp|P06723|VINT_BP186 RecName: Full=Integrase gi|3337277|gb|AAC34175.1| Int [Enterobacteria phage 186] Length = 336 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 66/308 (21%), Positives = 113/308 (36%), Gaps = 42/308 (13%) Query: 8 EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECD--------TRQFLIFLAFYTEEKIT 59 E ++FE + W + E R L +L Y RQ + AF + Sbjct: 34 EALAFEQYTVQNPWQEEKEDRRTLKELVDSWYSAHGITLKDGLKRQLAMHHAFECMGEPL 93 Query: 60 IQTIRQLSYTEIRA------FISKRRTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESN 112 + ++ R + R +++ R+L L+ ++ L + + E+ Sbjct: 94 ARDFDAQMFSRYREKRLKGEYARSNRVKEVSPRTLNLELAYFRAVFNELNRLGEWKGENP 153 Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172 + NMR + L Q L+ H + + ++ + G R SE Sbjct: 154 LKNMRPFRTEEMEMTWLTHDQISQLLGECNRHDHPDLE-------TVVRICLATGARWSE 206 Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232 A SL + + T KG K R VP+ E Y+ P D + + Sbjct: 207 AESLRKSQLAKYKITY-TNTKGRKNRTVPISK-------ELYESLPDDKKGRLFSDCY-- 256 Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 G F+ + R + LP H LRH+FA+H + NGG++ +Q +LGH + Sbjct: 257 --------GAFRSALE--RTGIELPAGQLTHVLRHTFASHFMMNGGNILVLQRVLGHTDI 306 Query: 293 STTQIYTN 300 T Y + Sbjct: 307 KMTMRYAH 314 >gi|313885888|ref|ZP_07819628.1| site-specific recombinase, phage integrase family [Porphyromonas asaccharolytica PR426713P-I] gi|312924643|gb|EFR35412.1| site-specific recombinase, phage integrase family [Porphyromonas asaccharolytica PR426713P-I] Length = 414 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 14/159 (8%) Query: 162 LLYGC--GLRISEALSLTPQNI--MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 ++ C GL + +L ++I +D + + + + K+ LL V K+I+ Y+ Sbjct: 250 FVFSCFTGLAYIDVANLKSEHIVTLDGKEWIMTRRQKTKVESNVLLLEVPKSIIAKYEGQ 309 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 ++ LF + + +N Y++++ G+ + T H RH+FAT LS G Sbjct: 310 TAREDM-----LFPILSNQKMNS-----YLKEIADICGIKKNLTFHLARHTFATLCLSKG 359 Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 + S+ +LGH + TTQIY + +K M + D+ Sbjct: 360 VPMESVSKMLGHTNIRTTQIYARITNKKIEHDMEQFADK 398 >gi|288927218|ref|ZP_06421085.1| integrase [Prevotella buccae D17] gi|288336012|gb|EFC74426.1| integrase [Prevotella buccae D17] Length = 116 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 34/59 (57%) Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 Y++++ G+ T H RH+FAT LS G + S+ +LGH + TTQIY + +K Sbjct: 33 YLKEIADICGIKKDLTFHMARHTFATMSLSKGVSMESVSKMLGHTNIKTTQIYARITNK 91 >gi|282859387|ref|ZP_06268495.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] gi|282587872|gb|EFB93069.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] Length = 431 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 59/261 (22%), Positives = 106/261 (40%), Gaps = 35/261 (13%) Query: 53 YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESN 112 Y E I +Q + + ++ + +K + K+ + L+ + S LK L KR I Sbjct: 192 YHVEDIPVQKVDTVLIKDLEDYFAKEKRFKLNTSA--GYLTMLASLLKDLHKRHIIDTYP 249 Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRI 170 +N +++ PR + ++ + E K + L+ C GL Sbjct: 250 FIN-HSIRWEVGTPRYITREEVGRIA------ALGEDKLQGYEKVSRDMFLFSCLTGLSY 302 Query: 171 SEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL 227 ++ LT Q+I + I+ K + +PLLP I Y + Sbjct: 303 TDVYHLTEQHIFHEAGMTWIRKPRMKTGNVCHIPLLPEAATIIERYRGIHT--------- 353 Query: 228 PLFRGIRGKPLN------PGV--FQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGG 278 R R +P PG +++++ R G+ + T H RH+FA+ + LS G Sbjct: 354 ---RAFRHEPPKGYLLPIPGCDTVNIHLKKIARLCGIQKTLTYHMARHTFASQMTLSEGV 410 Query: 279 DLRSIQSILGHFRLSTTQIYT 299 + S+ +LGH ++ TTQ+Y Sbjct: 411 SIESVSKMLGHSQIKTTQVYA 431 >gi|282877654|ref|ZP_06286469.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] gi|281300226|gb|EFA92580.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] Length = 447 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 49/187 (26%), Positives = 84/187 (44%), Gaps = 28/187 (14%) Query: 148 ETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI---VPL 202 E +W + R L++ + C GL IS+ +L +NI+ ++ L I+G+ K + V + Sbjct: 278 EIEWENYRFVRDLFV-FSCFSGLAISDVRNLREENIVLEEGKLCIKGRRMKTKTPYRVQV 336 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL----NPGVFQRYIRQLRRYLGLPL 258 LP + Y RGIR + + + ++R +G+ Sbjct: 337 LPPALTIMNRY-----------------RGIRAGFVFDVPTTDIVLNGMHYIQRNIGMET 379 Query: 259 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T H RH+FA+ + LS G + ++ +LGH L TTQ+Y V+S+ M I + Sbjct: 380 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERIHRDMQAIQQRI 439 Query: 318 HPSITQK 324 + T K Sbjct: 440 QDTFTLK 446 >gi|317481411|ref|ZP_07940478.1| phage integrase [Bacteroides sp. 4_1_36] gi|316902396|gb|EFV24283.1| phage integrase [Bacteroides sp. 4_1_36] Length = 334 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 17/159 (10%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI-RIVPLLPS---VRKAILEY 213 IL LLY G+R+SEAL + +++ D + ++ ++ R+VP+ S V K +EY Sbjct: 143 VILRLLYSTGMRVSEALYMRNEDVNLDSGYIHLRKTKNRCERLVPIGESMVIVLKQYIEY 202 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-----STTAHTLRHS 268 + P + + F + G + +L + +P H LRH+ Sbjct: 203 RNRMPIEKISHPNHLFFTKLDGTSFRVCTLYVFFHKLLKICNIPYIGNRQGPRIHDLRHT 262 Query: 269 FATHLL----SNGGDLRS----IQSILGHFRLSTTQIYT 299 FA H L NG DL + + + LGH LS+T+ Y Sbjct: 263 FAVHSLVQMGHNGMDLYTGLPILSACLGHRSLSSTEKYV 301 >gi|299141755|ref|ZP_07034890.1| integrase [Prevotella oris C735] gi|298576606|gb|EFI48477.1| integrase [Prevotella oris C735] Length = 422 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 75/162 (46%), Gaps = 26/162 (16%) Query: 167 GLRISEALSLTPQNIM---DDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY--DLCPFD 220 GL + L P++I+ D + +RI+ K D I+PLLP + K IL Y D D Sbjct: 257 GLARVDMQRLKPKHIIYNADGTAEIRIKRQKTDVEAIIPLLP-IAKQILSLYIKDKKADD 315 Query: 221 L---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSN 276 L NL I+ F + N G R + S T H RH+F+T + LSN Sbjct: 316 LIFPNLTIRKASFACV-----NIGQICR----------IDKSLTFHMARHTFSTTICLSN 360 Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 G + ++ +LGH + TTQIY + + M + D+ H Sbjct: 361 GISMETLSKMLGHSNIGTTQIYGKITDHKIQEDMTALTDREH 402 >gi|298245094|ref|ZP_06968900.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297552575|gb|EFH86440.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 396 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 52/200 (26%), Positives = 85/200 (42%), Gaps = 27/200 (13%) Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 R L +QA T + N + +E + I A+ L +RI EALSL + ++ Sbjct: 186 RILTAEQAQTFI-NAAQNALNEGRQI----GAVTLLFMTTAIRIGEALSLHWSEVNFEKK 240 Query: 187 TLRIQGKGDKIRIVPLL--------PSVRKAILEYYDLCPFDLNLNIQLP---------- 228 +RI+ R P SVR+ +L L + Q+ Sbjct: 241 EIRIENTLKYDRENPGFYETGPKSKSSVRRILLSRLALETLSAHRINQVEQRLQASEWED 300 Query: 229 ---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285 +F +G + + +R + LGLP H LRH+ +T L+ G ++++Q Sbjct: 301 NNLVFTNPKGGHMWDTTIRYQLRSFLKGLGLPEDLRPHELRHNVSTALIEAGVSIKTVQE 360 Query: 286 ILGHFRLSTT-QIYTNVNSK 304 +LGH ++STT IY +V K Sbjct: 361 MLGHSKISTTMDIYGHVTPK 380 >gi|254520658|ref|ZP_05132714.1| phage integrase [Clostridium sp. 7_2_43FAA] gi|226914407|gb|EEH99608.1| phage integrase [Clostridium sp. 7_2_43FAA] Length = 400 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 77/178 (43%), Gaps = 29/178 (16%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-----------QGKGDKIRIVP 201 D+R+ I L G GLR+ E L+L +I + +++ + K +I+ Sbjct: 207 DSRDRCIFNLALGSGLRLGELLALKWSDIDFSSNEVKVSKSVKRVKCFDENTNTKTKIIE 266 Query: 202 LLP----SVRKAILEYYDLCPFDLNLNI--QLPLFRG---IRGKPLNPGVFQRYI--RQL 250 LP S RK L + + NI Q L G I + P V YI R L Sbjct: 267 QLPKTRYSERKIPLPKATINELKRHKNIILQEKLMAGDIYIDNNLVFPNVLGGYIDARNL 326 Query: 251 -RRYLGLPLSTTA-----HTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNV 301 +RY + H LRH++AT L NG L+ IQ +LGH + T IYT+V Sbjct: 327 TKRYKSILNKANIPYRKFHALRHTYATRLFENGVSLKVIQVLLGHSSMDITANIYTHV 384 >gi|169830694|ref|YP_001716676.1| phage integrase family protein [Candidatus Desulforudis audaxviator MP104C] gi|169637538|gb|ACA59044.1| phage integrase family protein [Candidatus Desulforudis audaxviator MP104C] Length = 390 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 66/294 (22%), Positives = 121/294 (41%), Gaps = 53/294 (18%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 RG++ T+++Y CD R F FL E + +R+++ + ++ R + + ++ Sbjct: 18 RGMAAGTVEAYRCDFRDFSRFL-----ESQGVGEVREITTAVVNTYLVGLRKRGLSLSTV 72 Query: 89 KRSLSGIKSFLKYLKK---------RKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 R + + S L + + RK+ ++ +RN+ S+ R Sbjct: 73 HRRKNALSSLLGFCVQQGWVDNNPLRKVILQTKPRTVRNVVLSDMAVR------------ 120 Query: 140 NVLLHTSHETKWIDARN-SAILYLLYGCGLRISEALSLTPQNI---------MDDQSTLR 189 L + + +D +AI LL GLR SE +S ++ + ++T R Sbjct: 121 -TFLQSDVTYRSVDGLTVTAIKMLLVFTGLRCSEIVSADWAHVNLNSGLLTVFNSKNTAR 179 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 K R +PL +V +A+ + P+ Q PL + G L + + + Sbjct: 180 KGLPEGKDRDIPLCQTVIQAL----NALPYR-----QGPLLQTRGGLRLGVDALREIVAR 230 Query: 250 LRR-----YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 L + Y PL T H RH+ A+ L+S G + ++LGH + TQ Y Sbjct: 231 LSQASRLEYDHRPL--TPHCFRHNLASQLVSRGYSEADVATLLGHKPGTVTQAY 282 >gi|149923694|ref|ZP_01912089.1| Phage integrase [Plesiocystis pacifica SIR-1] gi|149815440|gb|EDM74979.1| Phage integrase [Plesiocystis pacifica SIR-1] Length = 316 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 41/115 (35%), Positives = 59/115 (51%), Gaps = 15/115 (13%) Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG---IRGKPLNPGVFQRYI-- 247 K DKIR VP+ +V +A+ + +L L +R GK ++P +QRY Sbjct: 175 KHDKIRRVPMTDAVAQALSAHR-------HLRGPLVFYRDGGYAAGKVMSP-RYQRYWLD 226 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + LRR LP HTLRH+F +HL G R+I + GH L TTQ Y +++ Sbjct: 227 KALRR-ANLP-DLGPHTLRHTFCSHLAMRGAPARAIMELAGHRDLLTTQGYMHLS 279 >gi|58616534|ref|YP_195663.1| putative integrase [Azoarcus sp. EbN1] gi|56315996|emb|CAI10639.1| putative integrase [Aromatoleum aromaticum EbN1] Length = 294 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 46/200 (23%), Positives = 92/200 (46%), Gaps = 18/200 (9%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTE---EKITIQTIRQLSYTEIRAFISKRRTQKIG 84 +R LS T+ +Y F++FL F + + ++ I AF++ Q+ Sbjct: 26 QRALSPQTIAAYR---DAFVLFLEFAQSRLGKSSAAIALADMTPELITAFLNHLEQQRHN 82 Query: 85 D-RSLKRSLSGIKSFLKYLKKRKITTESNI---LNMRNLKKSNSLPRALNEKQALTLVDN 140 RS L+ ++SFLK+ +R +++ + L + + + L+ ++ L ++D Sbjct: 83 CVRSRNARLAALRSFLKFAGRRDVSSLQVVERGLGIPAKRFERPMFGYLSREEMLAVID- 141 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ--STLRIQGKGDKIR 198 + + WI R+ + +LY G R+SE + +++ ++ + + + GKG K R Sbjct: 142 -----APDKTWIGQRDHVLFLMLYNTGARVSEITGVKVGDVVLEERAACVHLHGKGRKQR 196 Query: 199 IVPLLPSVRKAILEYYDLCP 218 VPL S KA+ + P Sbjct: 197 SVPLWRSTVKAVRAWLKQNP 216 >gi|308232201|ref|ZP_07415262.2| integrase [Mycobacterium tuberculosis SUMu001] gi|308374648|ref|ZP_07436853.2| integrase [Mycobacterium tuberculosis SUMu006] gi|308375530|ref|ZP_07444217.2| integrase [Mycobacterium tuberculosis SUMu007] gi|308377076|ref|ZP_07441079.2| integrase [Mycobacterium tuberculosis SUMu008] gi|308378046|ref|ZP_07481362.2| integrase [Mycobacterium tuberculosis SUMu009] gi|308379269|ref|ZP_07485701.2| integrase [Mycobacterium tuberculosis SUMu010] gi|308380428|ref|ZP_07489920.2| integrase [Mycobacterium tuberculosis SUMu011] gi|308214699|gb|EFO74098.1| integrase [Mycobacterium tuberculosis SUMu001] gi|308341194|gb|EFP30045.1| integrase [Mycobacterium tuberculosis SUMu006] gi|308346043|gb|EFP34894.1| integrase [Mycobacterium tuberculosis SUMu007] gi|308349004|gb|EFP37855.1| integrase [Mycobacterium tuberculosis SUMu008] gi|308353729|gb|EFP42580.1| integrase [Mycobacterium tuberculosis SUMu009] gi|308357572|gb|EFP46423.1| integrase [Mycobacterium tuberculosis SUMu010] gi|308361515|gb|EFP50366.1| integrase [Mycobacterium tuberculosis SUMu011] Length = 295 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 74/178 (41%), Gaps = 19/178 (10%) Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 ++SLP+ KQ + + + D R ++ L GLR +EA ++ Sbjct: 122 ADSLPKVRCPKQPPRPAGDDVWQAALAKA--DRRIELMIRLAGEAGLRRAEAAQAHTGDL 179 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241 MD L + GKG K RIVP I +Y D LF G L Sbjct: 180 MDG-GLLLVHGKGGKRRIVP--------ISDYLAALIRDTPHGY---LFPNGTGGHLTAE 227 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 + + + LP T HTLRH +AT +LR++Q +LGH + TT+ YT Sbjct: 228 HVGKLVSR-----ALPGDATMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYT 280 >gi|223369866|gb|ACM88801.1| integrase [uncultured bacterium] Length = 163 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 23/41 (56%), Positives = 28/41 (68%) Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + HTL HSFATHLL N D+R Q +LGH +S T YT+V Sbjct: 122 SCHTLPHSFATHLLENAYDIRPGQDLLGHKNVSPTLFYTHV 162 >gi|150010411|ref|YP_001305154.1| transposase [Parabacteroides distasonis ATCC 8503] gi|149938835|gb|ABR45532.1| transposase [Parabacteroides distasonis ATCC 8503] Length = 411 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 22/153 (14%) Query: 162 LLYGC--GLRISEALSLTPQNIMDD----------QSTLRIQGKGDKIRIVPLLPSVRKA 209 ++ C GL S+ SL ++++ D + L + K I +PLLP V A Sbjct: 250 FVFACFTGLAFSDVASLNNEHLVQDNLGDWWIRKGRVKLERRRKASSISNIPLLP-VPLA 308 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 ILE Y P + LP+ + Y++++ + G+ + T H RH+F Sbjct: 309 ILEKYREHPACIKKGCCLPVMCNQK--------MNSYLKEIADFCGIKKNLTTHVARHTF 360 Query: 270 ATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T + L+N L+ + +LGH TQ Y V Sbjct: 361 GTTVTLANNVPLQDVSVMLGHASTRMTQHYARV 393 >gi|295840963|dbj|BAJ06849.1| integron integrase intI [uncultured bacterium] Length = 418 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 56/234 (23%), Positives = 103/234 (44%), Gaps = 56/234 (23%) Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 +++ + ++L+ I F +++ ++I NI +R+ KK LP L++++ +++ Sbjct: 201 KQVSSSTQSQALNAIIYFYRHVLGKQIA--ENIEFIRS-KKPKRLPVVLSKEEVALVME- 256 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----QGKGDK 196 K ++ + + LLYGCG+R+ E + L ++D T R Q KG K Sbjct: 257 ---------KMVNPTFNLMANLLYGCGMRLMECVRL---RVLDIDFTYRQILIRQAKGKK 304 Query: 197 IRIVP----LLPSVRKAILEYYDLCPFDLNL---NIQLP---------LFRGIRGKPLNP 240 R+ P L +++ + + + DL ++ LP R +R + + P Sbjct: 305 DRVAPMPDKLFTPLKEQVKQVETMHAEDLKQGYGSVYLPGTLSRKYRNAERELRWQYVFP 364 Query: 241 GV--------------------FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 V QR+I++ G+ T HTLRH+FATHLL Sbjct: 365 SVKLSVDPRSGEVRRHHINERGLQRHIKRAADMTGINKRVTCHTLRHTFATHLL 418 >gi|221642176|ref|YP_002533263.1| integrase/recombinase, phage integrase family protein [Bacillus cereus Q1] gi|221243111|gb|ACM15820.1| integrase/recombinase, phage integrase family protein [Bacillus cereus Q1] Length = 361 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 72/328 (21%), Positives = 138/328 (42%), Gaps = 51/328 (15%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLA----------FYTE-EKITIQTIRQLSYTE 70 ++ +E++ LS TL Y + +F ++ TE ++ I+ + L E Sbjct: 25 VEYIEMKAMLSPATLYGYITEFEKFFKWMIEKRIAVINGNVATEIHEVPIELLESLPLNE 84 Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-L 129 + F +++ I +++ R+ S +KS KYL ++ N RN+ L + + Sbjct: 85 VNRFHMYLKSEGIEIKAINRTFSALKSLFKYLSQKTEDEYGNSYLSRNVMDKIELHKEKI 144 Query: 130 NEKQALTLVDNVLLHTSHETKWI-------------------------DARNSAILYLLY 164 + V N++ + + + ++ R+ A++ L+ Sbjct: 145 DAGARADDVANMIFNNNDDAAFLRFLANDYEFILKETSTRKYNYFLRDKERDIALISLIL 204 Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL------CP 218 G GLR+SE SL+ ++ Q T+++ KG+K + S + EY + CP Sbjct: 205 GTGLRVSELASLSLSSVNFRQKTIKVIRKGNKKSSILATQSSLDDVQEYLKVRQERYGCP 264 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-RRYL-GLPLSTTAHTLRHSFATHLLSN 276 + ++ +GK V R I+ L +Y + H LRH++AT+ Sbjct: 265 PEE----EIMFVTRYQGKYTQLSV--RAIQNLVDKYTSAFDEKRSPHKLRHTYATNHYKE 318 Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSK 304 DL ++ LGH + T IYTN+N++ Sbjct: 319 NKDLVLLRDQLGHTSVEVTSIYTNINNE 346 >gi|168705853|ref|ZP_02738130.1| resolvase [Gemmata obscuriglobus UQM 2246] Length = 73 Score = 49.7 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 5 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 45 >gi|116670747|ref|YP_831680.1| phage integrase family protein [Arthrobacter sp. FB24] gi|116610856|gb|ABK03580.1| phage integrase family protein [Arthrobacter sp. FB24] Length = 368 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 76/175 (43%), Gaps = 14/175 (8%) Query: 142 LLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG-DKIRI 199 L+ S + W A R++ +L + Y GLR +E L + + R G K+R Sbjct: 166 LIAASGKKGWQAAYRDAVMLKVAYSYGLRFNELRHLQTIDFAANPQARRFGKAGVCKVRF 225 Query: 200 ------VPLLPSVRKAILEYYDLCPFDLNLNIQ-----LPLFRGIRGKPLNPGVFQRYIR 248 P P + ++ D N + L LF RG + R +R Sbjct: 226 GKSRKGSPHKPRSVLTVFDWTAGVIEDWLANGRGTLDTLDLFPSERGGLICESTLLRRLR 285 Query: 249 QLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + LGLP+ H+LR S+ATHLL +G D R +Q +GH STT IY V+ Sbjct: 286 RYLNELGLPMDGLDLHSLRRSYATHLLEDGWDPRFVQHQMGHEHASTTGIYQFVS 340 >gi|37528605|ref|NP_931950.1| hypothetical protein plu4792 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36788044|emb|CAE17164.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 144 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 30/46 (65%) Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 LP H LRH+FA+H + NGG++ ++Q ILGH + T +Y ++ Sbjct: 78 LPKGQATHVLRHTFASHFMMNGGNIIALQQILGHASIIQTMVYAHL 123 >gi|34762210|ref|ZP_00143217.1| DNA integration/recombination/invertion protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27888171|gb|EAA25230.1| DNA integration/recombination/invertion protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 348 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 38/152 (25%), Positives = 72/152 (47%), Gaps = 8/152 (5%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY---- 213 AI+ +L +R +E ++ ++I +++ ++I KG+K I + AI +Y Sbjct: 184 AIMEVLISSAIRATELANIKIRDIDFEKNEIKIVRKGNKEGIAFMSTIAALAIKKYISER 243 Query: 214 --YDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 Y+ + + ++ I G + F+R ++ + + + H R +FA Sbjct: 244 GNYNTPYLWVVDGLMYKCYKNQILGSKIETEGFRRVLKSIATRAKVE-NVHPHRFRRTFA 302 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 T L G D+ IQ +LGH ++TT IY NV+ Sbjct: 303 TMALKKGMDVEEIQQVLGHQNINTTMIYVNVD 334 >gi|307566140|ref|ZP_07628597.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307345152|gb|EFN90532.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 419 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 86/187 (45%), Gaps = 28/187 (14%) Query: 148 ETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI---VPL 202 E +W + R L++ + C GL IS+ +L +NI+ ++ L I+G+ K + V + Sbjct: 250 EIEWENYRFVRDLFV-FSCFSGLAISDVRNLREENIVLEEGKLCIKGRRMKTKTPYRVQV 308 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL----NPGVFQRYIRQLRRYLGLPL 258 LP L I + +RGIR + + + ++R +G+ Sbjct: 309 LPPA----------------LTI-MNRYRGIRAGFVFDVPTTDIVLNGMHYIQRNIGMET 351 Query: 259 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 T H RH+FA+ + LS G + ++ +LGH L TTQ+Y V+S+ M I + Sbjct: 352 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERIHRDMQAIQQRI 411 Query: 318 HPSITQK 324 + T K Sbjct: 412 QDTFTLK 418 >gi|300361712|ref|ZP_07057889.1| site-specific tyrosine recombinase XerS [Lactobacillus gasseri JV-V03] gi|300354331|gb|EFJ70202.1| site-specific tyrosine recombinase XerS [Lactobacillus gasseri JV-V03] Length = 356 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 8/155 (5%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL----LPSVRKAI 210 R+ AI+ L+ G G+R+SE +S+ +NI L + KG + VP+ +P ++K Sbjct: 189 RDIAIIALILGTGIRVSECVSVNVRNINLKDEMLDVIRKGGQKDSVPIADWTIPYLKKYQ 248 Query: 211 LEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 D D N+ L + G + + + ++ + + G PL T H LRH+ Sbjct: 249 EIRADRYHADRDNIAFFLTRWHG-KTRRMTANAVEKMVNKYSAAFGKPL--TPHKLRHTL 305 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 A+ L D + LG + T +YT+V+ K Sbjct: 306 ASELYEVTKDQVLVAQQLGQKGTTATDLYTHVDQK 340 >gi|167553284|ref|ZP_02347034.1| integrase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205322250|gb|EDZ10089.1| integrase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 342 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 66/308 (21%), Positives = 113/308 (36%), Gaps = 42/308 (13%) Query: 8 EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECD--------TRQFLIFLAFYTEEKIT 59 E ++FE + W + E R L +L Y RQ + AF + Sbjct: 34 EALAFEQHTVQNPWQEEKEDRRTLKELVDSWYRAHGITLKDGLKRQLAMHHAFECMGEPL 93 Query: 60 IQTIRQLSYTEIRA------FISKRRTQKIGDRSLKRSLSGIKSFLKYLKK-RKITTESN 112 + ++ R + R +++ R+L L+ ++ L + + E+ Sbjct: 94 ARDFDAQMFSRYREKRLKGEYARSNRVKEVSPRTLNLELAYFRAVFNELNRLGEWKGENP 153 Query: 113 ILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172 + NMR + L Q L+ H + + ++ + G R SE Sbjct: 154 LKNMRPFRTEEMEMAWLTHDQISQLLGECNRHDHPDLE-------TVVRICLATGARWSE 206 Query: 173 ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG 232 A SL + + T KG K R VP+ E Y+ P D + + Sbjct: 207 AESLKKSQLAKYKITY-TNTKGRKNRTVPISK-------ELYESLPDDKKGRLFSDCY-- 256 Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 G F+ + R + LP H LRH+FA+H + NGG++ +Q +LGH + Sbjct: 257 --------GAFRSALE--RTGIELPAGQLTHVLRHTFASHFMMNGGNILVLQRVLGHTDI 306 Query: 293 STTQIYTN 300 T Y + Sbjct: 307 KMTMRYAH 314 >gi|154490810|ref|ZP_02030751.1| hypothetical protein PARMER_00727 [Parabacteroides merdae ATCC 43184] gi|154088558|gb|EDN87602.1| hypothetical protein PARMER_00727 [Parabacteroides merdae ATCC 43184] Length = 333 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 20/147 (13%) Query: 163 LYGC--GLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 L+ C GLRIS+ L+L +N+ D +R++ + K + LLP +A Y LC Sbjct: 190 LFSCLTGLRISDILNLKWENLCTAPDLGHCIRLRTQ--KTQTEALLPISYEA----YALC 243 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 + L R + G PL + + G+ T H RH++AT ++ G Sbjct: 244 GEPGTGKVFKELRRCMTGYPLKAWI---------KKAGIQKHITFHCFRHTYATLQIAAG 294 Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSK 304 D+ ++ +L H ++TTQIY + S+ Sbjct: 295 TDIFTVSKMLTHKNVATTQIYAELVSE 321 >gi|15964806|ref|NP_385159.1| putative integrase protein [Sinorhizobium meliloti 1021] gi|15073984|emb|CAC45625.1| Putative integrase [Sinorhizobium meliloti 1021] Length = 310 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 18/158 (11%) Query: 152 IDARNSAILYL---LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 I +R+ LYL L G R+ EA++L +I + ++T + G + R VPL + Sbjct: 154 IASRSELYLYLSIFLVDTGARLGEAIALKWNDIHEGRATFWVTKSG-RSRTVPLTVRAKD 212 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 A+ D P + I +R + ++ G LG H LRH Sbjct: 213 ALKRVADRSPGPFS-RIDQQKYRAVWNAAKVDAG------------LGNEDDLVPHILRH 259 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + A+ L+ G DLR +Q LGH L T Y ++ S + Sbjct: 260 TCASRLVRGGIDLRRVQMWLGHQTLEMTMRYAHLASHD 297 >gi|116662305|ref|YP_829359.1| phage integrase family protein [Arthrobacter sp. FB24] gi|116613069|gb|ABK05778.1| phage integrase family protein [Arthrobacter sp. FB24] Length = 368 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 76/175 (43%), Gaps = 14/175 (8%) Query: 142 LLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG-DKIRI 199 L+ S + W A R++ +L + Y GLR +E L + + R G K+R Sbjct: 166 LIAASGKKGWQAAYRDAVMLKVAYSYGLRFNELRHLQTIDFAANPQARRFGKAGVCKVRF 225 Query: 200 ------VPLLPSVRKAILEYYDLCPFDLNLNIQ-----LPLFRGIRGKPLNPGVFQRYIR 248 P P + ++ D N + L LF RG + R +R Sbjct: 226 GKSRKGSPHKPRSVLTVFDWTAGVIEDWLANGRGTLDTLDLFPSERGGLICESTLLRRLR 285 Query: 249 QLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + LGLP+ H+LR S+ATHLL +G D R +Q +GH STT IY V+ Sbjct: 286 RYLNELGLPMDGLDLHSLRRSYATHLLEDGWDPRFVQHQMGHEHASTTGIYQFVS 340 >gi|330752707|emb|CBL88171.1| putative transposase [uncultured Leeuwenhoekiella sp.] Length = 417 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 11/110 (10%) Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 K D+ +PLL IL+ YD + + + LP+F + +Y++++ Sbjct: 289 KNDEAVKIPLLDKAL-YILKKYDQGTENKSEKL-LPVFSNQK--------INKYLKEVAA 338 Query: 253 YLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 L + T H RH+FAT + LSNG + ++ +LGH +LSTTQIY V Sbjct: 339 ILKINKKLTFHAARHTFATTVTLSNGVPIETVSKLLGHTKLSTTQIYARV 388 >gi|322836802|ref|YP_004210716.1| integrase [Acidobacterium sp. MP5ACTX9] gi|321165889|gb|ADW71589.1| integrase family protein [Acidobacterium sp. MP5ACTX9] Length = 317 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 72/153 (47%), Gaps = 12/153 (7%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSVRKAI 210 D R+ A+L LL GCGLR +E SLT + D + + + GK IR VP +PS K Sbjct: 146 DKRDYAVLALLLGCGLRRAELTSLTLGHQQRDGHWAIVNLFGKCGHIRTVP-VPSWVKVA 204 Query: 211 LEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQL--RRYLGLPLSTTA-HTL 265 L+ + + I FR + G P + ++ + + RR + A H L Sbjct: 205 LDRWVIAASISEGAI----FRRVSRTGTVWGPRISEKLVWWIVRRRAETAGIEKLAPHDL 260 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 R + A + GG+L IQ +LGH TT+ Y Sbjct: 261 RRTCARLCHAAGGELEQIQFLLGHRSAETTERY 293 >gi|187932918|ref|YP_001886980.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Clostridium botulinum B str. Eklund 17B] gi|187721071|gb|ACD22292.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Clostridium botulinum B str. Eklund 17B] Length = 398 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 49/181 (27%), Positives = 76/181 (41%), Gaps = 37/181 (20%) Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG--------------KGDKIRIVPLLPS 205 L L Y CGLR+ EA ++T ++ L I K D RI+ L + Sbjct: 203 LQLAYRCGLRLGEAFAITWDDVDLKNQKLDINKQVQYKNKQWYFTPPKYDSYRIIDLDNT 262 Query: 206 V-----------RKAILEYYDL-CPFDLNLNIQLPLFRGIR---------GKPLNPGVFQ 244 + RK + Y +L +N Q+ G G + P V Q Sbjct: 263 IIDILKKYKQQQRKDKIYYGELYTELKINDKKQIKETDGTEIHLINIRENGTYIQPRVMQ 322 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303 + LG+ H+LRH+ AT LLS+G +++++Q LGH +L T +YT+V Sbjct: 323 HCFHIIHHKLGIK-ELDYHSLRHTHATMLLSSGANIKAVQERLGHKKLDMTLDVYTHVTD 381 Query: 304 K 304 + Sbjct: 382 E 382 >gi|58698751|ref|ZP_00373635.1| tyrosine recombinase XerC, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|58534724|gb|EAL58839.1| tyrosine recombinase XerC, putative [Wolbachia endosymbiont of Drosophila ananassae] Length = 261 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 56/176 (31%), Positives = 85/176 (48%), Gaps = 21/176 (11%) Query: 16 KERQNWLQNLEI---------ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQL 66 K+ QN +NL I ER ++ TL+SY D QF FL E T+ + + Sbjct: 4 KQSQNKKENLYITYYIDALASERFAAQNTLESYRSDLHQFEEFL---LESGTTLVGVNK- 59 Query: 67 SYTEIRAFISKRRTQK-IGDRSLKRSLSGIKSFLKYLKKRKIT----TESNILNMRNLKK 121 T I+ ++ TQK S+ R +S +K+F K L I +N ++N K Sbjct: 60 --TNIKDYVKSLCTQKKYKSSSISRKISAMKNFYKCLFNDGIIDFNPAPANDAELKNPKV 117 Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSL 176 S LP+ L+ ++ L+D V S K I + R AIL +LY G+R+SE +S+ Sbjct: 118 SRPLPKYLSVEEIFLLMDTVRKSASESNKEISSKRLCAILDILYSSGMRVSELISM 173 >gi|219669966|ref|YP_002460401.1| integrase family protein [Desulfitobacterium hafniense DCB-2] gi|219540226|gb|ACL21965.1| integrase family protein [Desulfitobacterium hafniense DCB-2] Length = 310 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 37/159 (23%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ----------GKGDKIRIVPLLPSVRK 208 + L+ GLR SEAL+LTP++ + ++I G G+ + S ++ Sbjct: 141 FILLVAKTGLRFSEALALTPKDFDFECQKVKISKTWNYKNAEGGFGETKNL-----SSKR 195 Query: 209 AILEYYDLCPFDLNLNIQL-----------PLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 I D+ LN Q+ P+F ++G+ N V R ++ L + G+P Sbjct: 196 TI-------QIDIQLNTQIERLSKDLADDEPIF--VQGRVFNSTVNNR-LKVLCKKAGVP 245 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 + +AH LRH+ A+ L+ G + SI LGH +STTQ Sbjct: 246 I-ISAHCLRHTHASLLIFAGVSIASIAKRLGHSSISTTQ 283 >gi|332652920|ref|ZP_08418665.1| phage integrase [Ruminococcaceae bacterium D16] gi|332518066|gb|EGJ47669.1| phage integrase [Ruminococcaceae bacterium D16] Length = 400 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 2/67 (2%) Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-T 294 KP+ P +++ L + GLP H LRH+FATH L++G D +++ ILGH S T Sbjct: 298 KPVRPSAAYYWMKVLLKEAGLP-HIRFHDLRHTFATHALASGVDAKTLSGILGHTNASFT 356 Query: 295 TQIYTNV 301 YT+V Sbjct: 357 LDTYTHV 363 >gi|302670790|ref|YP_003830750.1| tyrosine recombinase XerC1 [Butyrivibrio proteoclasticus B316] gi|302395263|gb|ADL34168.1| tyrosine recombinase XerC1 [Butyrivibrio proteoclasticus B316] Length = 353 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 59/220 (26%), Positives = 107/220 (48%), Gaps = 17/220 (7%) Query: 89 KRSLSGIKSFLKYLKKRKITTE--SNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH-- 144 KR +S ++S Y K + + + ++NM L + + NE TL+D V Sbjct: 117 KRKMSALRSMYSYFYKSEQISRNTAELINMPKLHEHEIIRLEPNE--VATLLDQVEAGEK 174 Query: 145 -TSHETKWIDA---RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 T + K+ + R+ A+L LL G G+R+SE + + +I D + LRI KG +V Sbjct: 175 LTKAQLKYHEKTKLRDVALLTLLLGTGIRVSECVGIDFDDIDFDTNGLRIHRKGGYNTVV 234 Query: 201 PLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 VR+A+L Y ++ P + + N LF ++ K ++ ++ +++ + + Sbjct: 235 YFPDEVREALLTYINQRKEIIPEEGSEN---ALFLSLQNKRISVRAVEKLVKKYAQNVTT 291 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 T H LR +F T+L GD+ + +LGH ++TT+ Sbjct: 292 LKKITPHKLRSTFGTNLYQESGDIYLVADVLGHKDVNTTR 331 >gi|295087166|emb|CBK68689.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 420 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 5/98 (5%) Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH 263 P + I + LC N + L +F G+ + R ++ G+ T H Sbjct: 309 PDYKPVIQQALQLCGIRPNDDEAL-VFEGL----TDASWISRPLKVWIEASGIKKHITFH 363 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 RHS+A+ LL NG D+ +I+S++GH + TTQIYT++ Sbjct: 364 CGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHL 401 >gi|302346799|ref|YP_003815097.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] gi|302150507|gb|ADK96768.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] Length = 412 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 22/153 (14%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDL 216 L+ C GL ++ LT ++I+ + I+ K I +PLLP AI+E Y Sbjct: 248 FLFSCYTGLSYTDVYHLTAEHIIHESDMDWIRKPRIKTGNICHIPLLPEA-SAIIERYR- 305 Query: 217 CPFDLNLNIQLPLFRGIRGK----PLNPGV--FQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 I FR K P+ PG +++++ R G+ + T H RH+FA Sbjct: 306 -------GIHTRAFRHEPPKGYLLPI-PGCDTVNIHLKKIARLCGIQKTLTFHMARHTFA 357 Query: 271 THL-LSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + + LS G + S+ +LGH ++ TTQ+Y + Sbjct: 358 SQMTLSEGVSIESVSKMLGHSQIKTTQVYAETS 390 >gi|270294597|ref|ZP_06200799.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270276064|gb|EFA21924.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 408 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 61/121 (50%), Gaps = 17/121 (14%) Query: 203 LPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 L + KAILE Y D P N I LP+ I + +N Y++++ G+ + T Sbjct: 295 LLDIPKAILEKYKDKLP---NGKI-LPV---ISNQKMND-----YLKEIAAICGIEKTLT 342 Query: 262 AHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIY---TNVNSKNGGDWMMEIYDQT 317 H RHS AT LL+NG + ++ ILGH + TTQIY TN+ N + + + D Sbjct: 343 YHVARHSCATSVLLANGVPIETVSKILGHTNIRTTQIYARITNLKVSNDMEMLAQKLDAA 402 Query: 318 H 318 H Sbjct: 403 H 403 >gi|265751258|ref|ZP_06087321.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA] gi|263238154|gb|EEZ23604.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA] Length = 405 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 26/153 (16%) Query: 162 LLYGC--GLRISEALSLTPQNI---MDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYD 215 ++ C GL ++ +L P++I + + +RI+ K D +PL P V K ILE Y+ Sbjct: 244 FIFSCMTGLAYADTRALHPRHIGKTSEGRRYIRIRRAKTDVEAFIPLHP-VAKQILELYN 302 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNP----GVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 GKP+ P V + + LG+ + + H RHSF T Sbjct: 303 TTD---------------EGKPVFPLPVRDVLWYEVHGMGVALGMRENLSYHMARHSFGT 347 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 L+ G + SI ++GH + +TQ+Y V + Sbjct: 348 LTLTAGIPIESIARMMGHTNIDSTQVYAQVTDR 380 >gi|254441008|ref|ZP_05054501.1| site-specific recombinase, phage integrase family [Octadecabacter antarcticus 307] gi|198251086|gb|EDY75401.1| site-specific recombinase, phage integrase family [Octadecabacter antarcticus 307] Length = 198 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 66/161 (40%), Gaps = 12/161 (7%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-------GKGDKIRIVPLLPSVR 207 RN I L GLR E L + ++D TL KG+ R +PL ++ Sbjct: 30 RNQTIFLLSIKAGLRAKEIAKLRWEMVLDADGTLSAHLSLSNDASKGNSGRRIPLNKDLK 89 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 + E YD+ + R R +P R LGL + ++H+ R Sbjct: 90 AKLNELYDVRLKGKGFGAADHVIRTERSDRTSPQAIVNMFSGWYRDLGL-IGCSSHSGRR 148 Query: 268 SFATH----LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 +F T+ + + GG LR +Q + GH L TT+ Y + K Sbjct: 149 TFVTNAAQKITTVGGSLRDVQYLAGHSSLQTTERYIEYSEK 189 >gi|332827492|gb|EGK00238.1| hypothetical protein HMPREF9455_03377 [Dysgonomonas gadei ATCC BAA-286] Length = 448 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 12/118 (10%) Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 V LLP V K ++E Y L N +P F G +N R ++++ + G+ Sbjct: 293 VKLLP-VAKKLIEQYRLVARS-NYIFPVPTF----GDSMN-----RCLQRIAKLCGITKR 341 Query: 260 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 T H RHSFAT + LS G + ++ +LGH ++TTQIY + ++ M + D+ Sbjct: 342 ITTHMARHSFATTVCLSKGVPIETVSQMLGHSCITTTQIYAKITNEKISKDMAALTDK 399 >gi|104774036|ref|YP_619016.1| integrase/recombinase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423117|emb|CAI97856.1| Integrase/recombinase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 305 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 29/155 (18%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD------KIRIVPLLPSVRKAILE 212 ++ L+ GLR SEAL LT ++I +Q T+ + D + + SVRK Sbjct: 138 MILLIAKTGLRFSEALGLTKEDIDLEQQTINVDKTWDYKSYTGSFKQTKNVSSVRK---- 193 Query: 213 YYDLCPFDLNLNIQL-----------PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 P D L +QL P+F + + N V ++++ L +P+ + Sbjct: 194 ----VPIDWKLAMQLNQVIQDLPNGEPIF--AQKRVFNSTV-NNFLKKHCEELNIPV-IS 245 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 H LRH+ A+ LL G + S+ LGH ++TTQ Sbjct: 246 VHGLRHTHASLLLFAGVSIASVAKRLGHADMTTTQ 280 >gi|103485931|ref|YP_615492.1| phage integrase [Sphingopyxis alaskensis RB2256] gi|98976008|gb|ABF52159.1| phage integrase [Sphingopyxis alaskensis RB2256] Length = 515 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 76/306 (24%), Positives = 132/306 (43%), Gaps = 34/306 (11%) Query: 9 IVSFELLKERQ----NWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIR 64 I S EL+ + +L L+ RG + T++ Y D R+ L ++ + Sbjct: 215 IPSVELVSDDDPHMAAYLAWLKQHRGATDETIRRYRADIRRLAPMLGEPSQWDAAV---- 270 Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS-- 122 +R +R + G SL ++ I+S++++L + I + + + ++++ Sbjct: 271 ------LRRAFQQRSKETPGSASLLVTI--IRSYIRFLVVQGICRPALLHAIPSVQRYRL 322 Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 ++LPR +N ++ + ++ R+ AI+ LL GLR + + +I Sbjct: 323 STLPRHVNPATIEQIIG-----ACPTDRPVEVRDKAIILLLARLGLRAGDIRDMHLDDID 377 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC------PFDLNLNIQLPLFRGIRGK 236 L ++GK + +PL V AIL+Y P L + Q P FR R Sbjct: 378 WRSGHLTVKGKTRRPDRLPLPQDVGDAILDYIATARPKTADPH-LFVRAQAP-FRSFRSS 435 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 G+ R + G+P T +H RHS AT+LL G L S+ +IL H TT Sbjct: 436 AEIAGIVAR-THERGGIEGVP--TGSHIFRHSLATNLLRAGAGLESVGTILRHSSPETTA 492 Query: 297 IYTNVN 302 IY V+ Sbjct: 493 IYAKVD 498 >gi|332346514|gb|AEE59847.1| putative site-specific recombinase [Escherichia coli UMNK88] Length = 229 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 157 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 200 >gi|301162189|emb|CBW21734.1| putative bacteriophage integrase [Bacteroides fragilis 638R] Length = 368 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 50/156 (32%), Positives = 71/156 (45%), Gaps = 37/156 (23%) Query: 163 LYGC--GLRISEALSLTPQN--IMDDQS-TLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 L+ C GLRIS+ L+L ++ I DQ LRI+ + K + LP +A Y+LC Sbjct: 225 LFACLTGLRISDILNLQWEDFTIAPDQGYCLRIRTQ--KTQTEATLPISYEA----YELC 278 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY--------LGLPLSTTAHTLRHSF 269 G P VF+ R + Y G+ T H RHS+ Sbjct: 279 -----------------GTPGTGKVFKDLKRSMINYPLKSWLKKAGITKPITFHGFRHSY 321 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTN-VNSK 304 A +S G D+ ++ +L H +STTQIY + VNSK Sbjct: 322 AVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSK 357 >gi|291335907|gb|ADD95502.1| phage related integrase [uncultured phage MedDCM-OCT-S08-C41] Length = 282 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 46/228 (20%), Positives = 93/228 (40%), Gaps = 38/228 (16%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 ++ R +S + + L + +RK+ + ++ + ++++ + N + Sbjct: 71 TINRCISSVSTVLHHCARRKLIAKPDVFERKKEAPPREFFYSIDQLGEMVKAANTIFR-- 128 Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPS 205 + IL+ ++ G+R E L L +I + + + + + K + R VP+ Sbjct: 129 -----MPELGDIILFAVH-TGMRQGEVLRLVTSDIDFNFNVIHVHKTKNNTTRTVPINSQ 182 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRY------IRQLRR---YLGL 256 ++ P+ ++ VF Y +RQLR+ Y+GL Sbjct: 183 IK--------------------PMLERRVADAIDDHVFWEYQDKDTLLRQLRKVTAYIGL 222 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + HTLRH+F T L G L + I+GH + TT Y V+++ Sbjct: 223 DENYLFHTLRHTFCTILAGKGTPLHQVAEIMGHNDIKTTLRYAKVSAE 270 >gi|291535007|emb|CBL08119.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1] Length = 270 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 59/235 (25%), Positives = 100/235 (42%), Gaps = 40/235 (17%) Query: 96 KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN-----------------------EK 132 + F++YL ++IT + +L L++ + P +N + Sbjct: 29 EKFVRYLNGKEITKDRTMLYREKLREEDLSPATINLYVIAVNRYLRYLECGQASIKTLKV 88 Query: 133 QALTLVDNVLLHTSHETKWIDARNSA------ILYLLYGCGLRISEALSLTPQNIMDDQS 186 Q V+N++ ++ A+ S I+ L G+R+SE +T + + + Sbjct: 89 QKKCSVENIISRKEYQELLNYAKRSGREKYYYIMRTLALTGIRVSELQYITVETL--ETG 146 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQR 245 +++ KG KIR V LP V I E C + N I +FRG G P+N + Sbjct: 147 RVQVYNKG-KIRDV-YLPDV--LIRELKKFCREEKENDGI---IFRGRGGDPINRITVYK 199 Query: 246 YIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 I L +G+ H+ RH FA + G+L + +LGH + TT+IYT Sbjct: 200 MIAYLGDMVGIKKEKVHPHSFRHFFAISYMERYGNLAELADLLGHTSIETTRIYT 254 >gi|255009702|ref|ZP_05281828.1| putative transposase [Bacteroides fragilis 3_1_12] gi|313147488|ref|ZP_07809681.1| transposase [Bacteroides fragilis 3_1_12] gi|313136255|gb|EFR53615.1| transposase [Bacteroides fragilis 3_1_12] Length = 408 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 17/126 (13%) Query: 203 LPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 L + KAILE Y D P N I LP+ I + +N Y++++ G+ + T Sbjct: 295 LLDIPKAILEKYKDKLP---NGKI-LPV---ISNQKMND-----YLKEIAGICGIEKNLT 342 Query: 262 AHTLRHSFATH-LLSNGGDLRSIQSILGHFRLSTTQIY---TNVNSKNGGDWMMEIYDQT 317 H RHS AT LLSNG + ++ ILGH + TTQIY T++ N + + + D T Sbjct: 343 YHVARHSCATSVLLSNGVPIETVSKILGHTNIRTTQIYARITDLKVSNDMEMLAQKLDAT 402 Query: 318 HPSITQ 323 H + ++ Sbjct: 403 HRTASR 408 >gi|228948202|ref|ZP_04110486.1| Integrase/recombinase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228811560|gb|EEM57897.1| Integrase/recombinase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 322 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 82/175 (46%), Gaps = 12/175 (6%) Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGDK 196 N+LL T++I+ R++A + L+Y G+R+ L +++ + LRI G K + Sbjct: 140 NLLLSILDLTRFIELRDAASVLLMYQTGIRVGTLSQLEHKHVNLENKVLRIDGGIIKNHE 199 Query: 197 IRIVP---LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQ 249 +P +L V A+++ D+ + +N G+ P N + +R + Sbjct: 200 SIHLPFDDVLARVLGALMKQNDIIRKECRVNNNYLFITKNGGRIATSPTNNNITKRLSKH 259 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 R Y GL + H LR FA +LL G ++ I LGH L+ T Y +++ + Sbjct: 260 SRDY-GLK-NINPHALRRGFAKNLLKKGANIALISKALGHSDLAVTTRYLHLDKE 312 >gi|152984624|ref|YP_001346111.1| integrase [Pseudomonas aeruginosa PA7] gi|150959782|gb|ABR81807.1| integrase [Pseudomonas aeruginosa PA7] Length = 394 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 9/85 (10%) Query: 237 PLNPG--VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 P G F+R + + L LP H LRH+FA+H + NGGD+ ++Q +LGH L Sbjct: 261 PFRSGYNTFRRAVEAV--GLDLPEGQLTHVLRHTFASHYMRNGGDIITLQRVLGHASLQM 318 Query: 295 TQIYTNVNSKNGGDWMMEIYDQTHP 319 T Y + + + M E+ HP Sbjct: 319 TMRYAHFSPGH----MAEVV-HLHP 338 >gi|329963640|ref|ZP_08301114.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] gi|328528050|gb|EGF55031.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] Length = 379 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 15/140 (10%) Query: 166 CGLRISEALSLTPQNIMDD----QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221 CGLR + ++L ++I D S +Q K + +PL P K + P Sbjct: 235 CGLRHCDIVALEWKDIHYDTNGNASINIVQQKTHEAISLPLSPEAVKYL-------PNRE 287 Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281 +F+G+ + + R+ +Q G+ T H RH+ AT +L+ G DL Sbjct: 288 KAQDTDKIFKGLISLGRSNEILDRWAKQA----GILKHVTFHVARHTHATMMLTLGADLY 343 Query: 282 SIQSILGHFRLSTTQIYTNV 301 +I +LGH + TTQIY + Sbjct: 344 TISKLLGHTNIQTTQIYAKL 363 >gi|33323004|gb|AAQ07239.1|AF496546_1 integrase/recombinase [Lactobacillus delbrueckii subsp. lactis] Length = 127 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 5/83 (6%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 K+ +P AL E + L+D L T + R+ A++ LLY G+R+SEA++L Sbjct: 6 KREKRMPLALTEAEVGKLLDQPDLTTD-----LGIRDRALVELLYATGMRVSEAVNLQLA 60 Query: 180 NIMDDQSTLRIQGKGDKIRIVPL 202 ++ D +++ GKG+K R++P+ Sbjct: 61 DVHADLQLIKVLGKGNKERLIPV 83 >gi|332652921|ref|ZP_08418666.1| phage integrase [Ruminococcaceae bacterium D16] gi|332518067|gb|EGJ47670.1| phage integrase [Ruminococcaceae bacterium D16] Length = 540 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 69/159 (43%), Gaps = 34/159 (21%) Query: 167 GLRISEALSLTPQNIMDDQSTL-------RIQGK--------GDKIRIVPLLPSVRKAIL 211 GLR E L+L ++ D TL + GK IR + L P+V + Sbjct: 218 GLRRGELLALQWSDLDLDTGTLSVTKQVYEVNGKMQLSVPKTKASIRKLVLPPAVVEVFR 277 Query: 212 EYYD------LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 EY L P NL++ PL PG R + + G H L Sbjct: 278 EYRKTAKSRWLFPSPKNLDM-----------PLTPGSMLRRLHIILERAGCK-QIRFHDL 325 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNS 303 RH+FAT L NG D++++ ++LGH +TT IYT++ S Sbjct: 326 RHTFATMALENGMDIKTLSAMLGHVSAATTLDIYTHITS 364 >gi|288800952|ref|ZP_06406409.1| integrase [Prevotella sp. oral taxon 299 str. F0039] gi|288332413|gb|EFC70894.1| integrase [Prevotella sp. oral taxon 299 str. F0039] Length = 417 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 22/153 (14%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDL 216 L+ C GL ++ LT ++I+ + I+ K I +PLLP AI+E Y Sbjct: 253 FLFSCYTGLSYTDVYHLTAEHIIHESGMNWIRKPRIKTGNICHIPLLPEA-SAIIERYR- 310 Query: 217 CPFDLNLNIQLPLFRGIRGK----PLNPGV--FQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 I FR K P+ PG +++++ R G+ + T H RH+FA Sbjct: 311 -------GIHTRAFRHEPPKGYLLPI-PGCDTVNIHLKKIARLCGIQKTLTFHMARHTFA 362 Query: 271 THL-LSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + + LS G + S+ +LGH ++ TTQ+Y + Sbjct: 363 SQMTLSEGVSIESVSKMLGHSQIKTTQVYAETS 395 >gi|302346774|ref|YP_003815072.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] gi|302150769|gb|ADK97030.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] Length = 406 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 27/153 (17%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYDL 216 ++ C GL IS+ +L +NI+ ++ L I+G+ K + V +LP + + Y Sbjct: 250 FVFSCFSGLAISDVRNLREENIVLEEGELCIKGRRMKTKTPYRVQVLPPAQTIMNRY--- 306 Query: 217 CPFDLNLNIQLPLFRGIRGKPL----NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 RGIR + V + ++R +G+ T H RH+FA+ Sbjct: 307 --------------RGIRAGFVFDVPTTDVILNGMHYIQRNIGMKTPLTFHMARHTFASL 352 Query: 273 L-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + LS G + ++ +LGH L TTQ+Y V+S+ Sbjct: 353 ITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSE 385 >gi|329929034|ref|ZP_08282836.1| site-specific recombinase, phage integrase family [Paenibacillus sp. HGF5] gi|328937023|gb|EGG33452.1| site-specific recombinase, phage integrase family [Paenibacillus sp. HGF5] Length = 181 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 38/177 (21%), Positives = 81/177 (45%), Gaps = 14/177 (7%) Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 + + +++ + + + L+ SH RN + GLRI + L +++M + Sbjct: 5 QPIRDQETIEAIKDFLMQQSH-------RNYMLFVFGINTGLRIQDMLKFKVKDVMGEYL 57 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245 + + K K +I+ + P +++ I Y ++ P D + P +G + KP+ + + Sbjct: 58 VM-TEMKTGKRKIMKIPPVLKREIKRYIANMNPED----VLFPSRQGGKNKPIKRDMAYK 112 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 ++ + GL + HTLR +F H+ D+ +Q++L H S T Y ++ Sbjct: 113 IMKAAAKEFGL-VDIGTHTLRKTFGYHMYQKKKDITLVQNLLNHSDRSITMRYIGMD 168 >gi|294782183|ref|ZP_06747509.1| DNA integration/recombination/inversion protein [Fusobacterium sp. 1_1_41FAA] gi|294480824|gb|EFG28599.1| DNA integration/recombination/inversion protein [Fusobacterium sp. 1_1_41FAA] Length = 360 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 52/203 (25%), Positives = 91/203 (44%), Gaps = 27/203 (13%) Query: 96 KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDAR 155 K++ KYLK + + + K++ R + +++ L DN+ + +++ ID Sbjct: 162 KNYAKYLKTKTVEKGN---------KTSDRERVITQEELQVLWDNISNNETNKHGIIDM- 211 Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK--IRIVPLLPSVRKAI-LE 212 +L L Y GLRISE L + +++ ++ ++ K IR VP+ + Sbjct: 212 ---VLILCY-TGLRISELLRVKRKDVYLNEYYFEVEKSKSKAGIRKVPIADKIVDLFRAR 267 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 Y+ F L++ + G + F + R L R LGL + H RH+FA+ Sbjct: 268 YFSKDTF---------LWQRLDGLEYDYDSFDNHFRILFRDLGLSYHS-LHDTRHTFASL 317 Query: 273 LLSNGGDLRSIQSILGHFRLSTT 295 L +N D +I I+GH TT Sbjct: 318 LSNNVADKDAIIKIIGHSNYKTT 340 >gi|293374058|ref|ZP_06620397.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292631019|gb|EFF49658.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 418 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 10/135 (7%) Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226 G+R + L + R+ K + V +P +A Y+LC + Sbjct: 274 GIRHCDIQKLKWSEVEQFNGGYRLNFTQQKTKGVEYMPISEQA----YNLC--GEQKEGE 327 Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286 L +F G+ P +P R +++ G+ T H RHS+AT L+ G D+ ++ + Sbjct: 328 LLVFAGL---P-DPSWINRPVKKWVEAAGISKHITFHCFRHSYATLQLAGGTDIYTVSKM 383 Query: 287 LGHFRLSTTQIYTNV 301 LGH + TTQ+Y V Sbjct: 384 LGHTNVRTTQVYAKV 398 >gi|260662071|ref|ZP_05862967.1| site-specific tyrosine recombinase XerS [Lactobacillus fermentum 28-3-CHN] gi|260553454|gb|EEX26346.1| site-specific tyrosine recombinase XerS [Lactobacillus fermentum 28-3-CHN] Length = 359 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 8/153 (5%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ A++ L+ G G+R+SE + ++ TL + KG + VP+ P I Y Sbjct: 189 RDIALVALILGTGIRVSETAGIDVNDLDLKGQTLEVTRKGGQRDAVPIAPWTMPYIQAYA 248 Query: 215 DL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 + P L + G + K ++ +R + + R G PL T H LRH+ Sbjct: 249 TIRRQRYQPEKTERAFFLTHYHG-QTKRISVNGIERLVSKYSRAFGHPL--TPHKLRHTL 305 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 A+ L D + LG S T +YT+V+ Sbjct: 306 ASELYDVTKDQVLVAQQLGQKGTSATDLYTHVD 338 >gi|261377411|ref|YP_003208350.1| putative integrase [uncultured bacterium] gi|257735399|emb|CAZ72214.1| putative integrase [uncultured bacterium] Length = 312 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 18/159 (11%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMD-----DQSTLRIQGKG--DKIRIVPLLPSVR 207 R+ A+L ++ GLR +S+ +I D D L QGKG +K V L V Sbjct: 142 RDYAMLSVMVTTGLR---EISIVRADIGDIRTAGDAVALFYQGKGHEEKADYVKLAEPVE 198 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL--RRYLGLPLST---TA 262 +A+ Y + + PLF I + + R + ++ R + + L + T Sbjct: 199 EAVRAYLKARG---GADPKAPLFSSIANRNNGERMTTRSVSRVAKERLIAVGLESDRLTG 255 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 H++RH+ AT L NGG + + +LGH ++TT IY++ Sbjct: 256 HSMRHTAATLNLLNGGTVEETRQLLGHTNINTTLIYSHA 294 >gi|255011911|ref|ZP_05284037.1| putative integrase [Bacteroides fragilis 3_1_12] gi|313149745|ref|ZP_07811938.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313138512|gb|EFR55872.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 327 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 63/253 (24%), Positives = 107/253 (42%), Gaps = 29/253 (11%) Query: 61 QTIRQLSYTEIRAFISKRR----TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116 + IR ++ ++R +++ + K+ +++R LS SF +L+ +S + + Sbjct: 86 KNIRHITTDDLRNYLNDYQQISGATKVTVDNIRRILS---SFFAWLEDEDYIVKSPVRRI 142 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 +K ++ T D L + I R+ A++ LL G+R+ E + L Sbjct: 143 HKVKVGKTVKE--------TYSDEALEQMRDHCEGI--RDLALIDLLASTGMRVGELVKL 192 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 +I + + GKGDK R V + K L+ Y D N + + L Sbjct: 193 NRNDIDFENRECIVTGKGDKQRRV-YFDARTKIHLQRYLAGRIDDNSALFVSLL-----A 246 Query: 237 PLN----PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 P + GV R +R+L R L +P H R + AT + G + +Q +LGH L Sbjct: 247 PYDRLQISGVEIR-LRRLGRELNIP-KVHPHKFRRTLATMAIDKGMPIEQVQHLLGHQSL 304 Query: 293 STTQIYTNVNSKN 305 TT Y VN N Sbjct: 305 DTTLQYAMVNQTN 317 >gi|237742699|ref|ZP_04573180.1| tyrosine recombinase xerC [Fusobacterium sp. 4_1_13] gi|229430347|gb|EEO40559.1| tyrosine recombinase xerC [Fusobacterium sp. 4_1_13] Length = 414 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 77/179 (43%), Gaps = 34/179 (18%) Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-----GKGDKIRIV-------------P 201 YLL GLR SE L +T NI ++ +L ++ +KI +V P Sbjct: 221 FYLLIFLGLRKSELLGITIDNINFEEKSLYLEQSLIWDSENKIYVVNREMKSPLAHRKFP 280 Query: 202 LLPSVRKAILEYYDLCPFD-------------LNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 L+P + + E D D LN N + L GK L + Sbjct: 281 LIPILTDFLTERIDRIKEDKIFFGNTYGIDKKLNFNAEGYLCIDREGKILRKFKLNYELD 340 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV-NSKN 305 ++ + + L + H LRH+ AT + S G DL+ IQ LGH +STT IY + NSKN Sbjct: 341 KILKKIELE-HLSIHELRHTCATLMYSEGVDLKKIQYWLGHSNISTTANIYAHYDNSKN 398 >gi|184155416|ref|YP_001843756.1| site-specific tyrosine recombinase XerS [Lactobacillus fermentum IFO 3956] gi|183226760|dbj|BAG27276.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956] Length = 359 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 8/153 (5%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ A++ L+ G G+R+SE + ++ TL + KG + VP+ P I Y Sbjct: 189 RDIALVALILGTGIRVSETAGVDVNDLDLKGQTLEVTRKGGQRDAVPIAPWTMPYIQAYA 248 Query: 215 DL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 + P L + G + K ++ +R + + R G PL T H LRH+ Sbjct: 249 TIRRQRYQPEKTERAFFLTHYHG-QTKRISVNGIERLVSKYSRAFGHPL--TPHKLRHTL 305 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 A+ L D + LG S T +YT+V+ Sbjct: 306 ASELYDVTKDQVLVAQQLGQKGTSATDLYTHVD 338 >gi|296158621|ref|ZP_06841451.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295891189|gb|EFG70977.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 360 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 67/308 (21%), Positives = 136/308 (44%), Gaps = 37/308 (12%) Query: 16 KERQNWLQNLEI--ERGLSKLTLQ--SYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEI 71 ++R++W ++ +I + L+K + S E Q+ +FL + + ++ T+ + E Sbjct: 22 QQREDWRRDPQIAFDAWLAKQHFRRSSAEVYQAQWGLFLDWLGMRQKSLVTVDARTIAEF 81 Query: 72 RAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-----------ESNILNMRNLK 120 A + R+TQ++ R L I+ L ++++ + + E+ N R+ + Sbjct: 82 VAGLDVRKTQRM------RYLRLIERVLDHVREIESASTNPARFIAQDGEAAWRNARDNE 135 Query: 121 KSNSLPRALNEKQALTL-VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 + L A E+ ALT + + L S +W + R+ A++ + G GL+ EA +L+ Sbjct: 136 PTGFLSHA--ERTALTAHLFSPLADLSAAQRWRERRDRALIAVFLGGGLKTGEAAALSVS 193 Query: 180 NIMDDQSTLRIQGKGD----KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235 + + I+ + R+ P ++ A L L +L N+ P G Sbjct: 194 CVNAGSPWVTIEAANPMLTRRTRLAPFAAAILDAWLAERQLA--ELAGNLVFPA--SPSG 249 Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTA----HTLRHSFATHLLSNGGDLRSIQSILGHFR 291 +P++ R + L G+ S T+ TLR++FA L +G + + LG + Sbjct: 250 RPMHKATMLRAVDALIGGAGIAASRTSRASPQTLRNTFAADLFESGVEAELVGQWLGFVQ 309 Query: 292 -LSTTQIY 298 +S ++Y Sbjct: 310 AVSANRLY 317 >gi|163801756|ref|ZP_02195654.1| guanosine 5'-monophosphate oxidoreductase [Vibrio sp. AND4] gi|159174673|gb|EDP59475.1| guanosine 5'-monophosphate oxidoreductase [Vibrio sp. AND4] Length = 343 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 6/71 (8%) Query: 236 KPLNPGVFQR------YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289 KP + +F+ YI + + + LP +H LRHSFA+H + NGG++ ++ ILGH Sbjct: 255 KPTSEKLFEECYTPFCYILKNKLGITLPSGQASHVLRHSFASHFMMNGGNILVLRDILGH 314 Query: 290 FRLSTTQIYTN 300 +S T Y + Sbjct: 315 ADISMTMRYAH 325 >gi|302387561|ref|YP_003823383.1| integrase family protein [Clostridium saccharolyticum WM1] gi|302198189|gb|ADL05760.1| integrase family protein [Clostridium saccharolyticum WM1] Length = 285 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 9/146 (6%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R S ++ + G+R+SE +T + + ++ + +GK R + L +R+A++ Y Sbjct: 129 RLSLVIQSICATGIRVSELQFITMEAVQAGRADVNCKGK---TRTIFLPEKLRRALISYA 185 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHL 273 P+F GKPL+ R ++ L + + P H LRH FA Sbjct: 186 RRQKRSFG-----PVFVTKTGKPLDRSNIWRDMKDLCKSADVKPEKVFPHNLRHLFARIY 240 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYT 299 + DL + ILGH ++TT+IYT Sbjct: 241 YTLEKDLFRLADILGHSNINTTRIYT 266 >gi|291517466|emb|CBK71082.1| Site-specific recombinase XerD [Bifidobacterium longum subsp. longum F8] Length = 259 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 66/148 (44%), Gaps = 31/148 (20%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 +L L CGLR E + +++M D +L + GKGDK RIVP+ Sbjct: 116 MLRLGAECGLRRFEIAKVHSRDVMRDLVGWSLVVVGKGDKQRIVPIGD------------ 163 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST------TAHTLRHSFA 270 DL L L R G L PG + + Y+G LS TAH+LRH +A Sbjct: 164 ---DLAL-----LIRSAHGY-LFPGRWSGHAES--SYVGRHLSDLLGDGWTAHSLRHRYA 212 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIY 298 T + DL + +LGH + TTQ Y Sbjct: 213 TTTYAATRDLLLVSKLLGHASVETTQRY 240 >gi|229175638|ref|ZP_04303146.1| Integrase [Bacillus cereus MM3] gi|228607779|gb|EEK65093.1| Integrase [Bacillus cereus MM3] Length = 330 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 50/228 (21%), Positives = 103/228 (45%), Gaps = 14/228 (6%) Query: 81 QKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 Q IG D ++ ++ +++ + YL + ++ + I ++ L++ L + N+++ Sbjct: 90 QGIGLCDTTININIRTLRALINYLYREELIEVNPIEKIKLLRQDIDLTNSFNDEEI---- 145 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG---KGD 195 +L + ++ R+ + +L GLRI E + L +I + IQ K Sbjct: 146 -KEILRQPNLRDFVGFRDFVGINVLLDSGLRIQELMGLRVSDIDFQTRFITIQANKSKNR 204 Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 K R+VP+ V K +L+ + + +F G+PL F + ++ G Sbjct: 205 KPRLVPVSTHVTKVLLQLINENQAHFKTD---RVFLSSYGEPLGANHFNKRLKYYAEKAG 261 Query: 256 L-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + TAH RH++A +++ NG D ++Q I G + T + Y ++ Sbjct: 262 IKDKKVTAHVYRHTWAKNMILNGCDAFTLQKIGGWSDIRTMRRYIQMD 309 >gi|160884941|ref|ZP_02065944.1| hypothetical protein BACOVA_02932 [Bacteroides ovatus ATCC 8483] gi|156109291|gb|EDO11036.1| hypothetical protein BACOVA_02932 [Bacteroides ovatus ATCC 8483] Length = 411 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 22/168 (13%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQS----------TLRIQGKGDKIRIVPLLPSVRKA 209 ++ C GL + +L ++++ D + L + K I +PLLP V A Sbjct: 250 FIFACFTGLAFVDVSTLKKEDMVQDNNGDWWIRKGRIKLMHRRKASSICNIPLLP-VPLA 308 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 IL+ Y+ P + LP+ P N + Y++++ + G+ + T H RH+F Sbjct: 309 ILKKYENNPVCIKKGYCLPV-------PCNQKM-NSYLKEIADFCGIKKNITTHVARHTF 360 Query: 270 ATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 T + L+N L+ + +LGH TQ Y V + + M+ + +Q Sbjct: 361 GTTITLANNVPLQDVSVMLGHASTRMTQHYARVMNASLKKSMIHVKEQ 408 >gi|315297106|gb|EFU56386.1| site-specific recombinase, phage integrase family [Escherichia coli MS 16-3] Length = 127 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 56 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 99 >gi|262067704|ref|ZP_06027316.1| integrase/recombinase [Fusobacterium periodonticum ATCC 33693] gi|291378429|gb|EFE85947.1| integrase/recombinase [Fusobacterium periodonticum ATCC 33693] Length = 280 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 63/269 (23%), Positives = 111/269 (41%), Gaps = 30/269 (11%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +N++ LE E T+ S D QFLI+L + I +L I+ + +K Sbjct: 7 KNFIYYLEFEENKKHNTVISIRKDLNQFLIYLNEHG-----IIDFNKLDELLIKEYFTKL 61 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 +T++I + R LS +K F KYL + + + + + + + K L ++ Sbjct: 62 KTEEISVSTFNRRLSSVKKFYKYLVDKGLKEKGSEILIESEKNDEKQIEYLTPEEI---- 117 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKI 197 N++ T + R+ + LLY G+ ++E LSL N ++ + ++ K K Sbjct: 118 -NLVRATMQGENFNILRDRLMFELLYSSGMTVAELLSLGEVNFNLEKREIYILKNKLSKT 176 Query: 198 R---------IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 + L S ++ E D N NI +F + L +R I Sbjct: 177 MYFSETCKEFYIKFLNSKKEKFKE-------DYNPNI---IFTNNSNERLTDRSVRRLIN 226 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 + L + +TLRHSF ++L NG Sbjct: 227 KYGEMANLNKEISPYTLRHSFCIYMLRNG 255 >gi|212692864|ref|ZP_03300992.1| hypothetical protein BACDOR_02364 [Bacteroides dorei DSM 17855] gi|212664653|gb|EEB25225.1| hypothetical protein BACDOR_02364 [Bacteroides dorei DSM 17855] Length = 407 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 16/151 (10%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYY 214 A ++ LY GLR + LT +N+ L+ + KG ++P + +L Sbjct: 255 AFIFCLYS-GLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIP-LNDGLLSII 312 Query: 215 DLCPFDLN-LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 P D N L LP + + +++ + G+ + H RHSFA ++ Sbjct: 313 GEAPADKNCLIFDLPTYESC----------CKSVKRWVKRAGIDKHISWHCARHSFAVNI 362 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 L+NG +++++ S+LGH L T+ YT K Sbjct: 363 LNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393 >gi|218442606|ref|YP_002380927.1| integrase [Cyanothece sp. PCC 7424] gi|218175377|gb|ACK74108.1| integrase family protein [Cyanothece sp. PCC 7424] Length = 329 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 14/156 (8%) Query: 160 LYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL- 216 + +L GC R E L +I+ + LR+ GK IR+VPL P + + +Y Sbjct: 162 IMVLQGC--RTVEMHRLKMHDIIRQGNNVGLRVSGK-RSIRVVPLTPDLALLLDKYLAAR 218 Query: 217 CPFDLNLNIQLPLFRGIR----GKPLN----PGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 LN P+F + G+PL+ + Q++++ ++ T H+LRH+ Sbjct: 219 TAAGDRLNDNTPIFISLSNANYGEPLSRRSIQRIVQKHLQAFKQTGTNARKLTTHSLRHT 278 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 T L G +LR +Q +LGH TT +Y ++ + Sbjct: 279 AGTLALRTGAELRQVQDMLGHADPRTTALYAHIADR 314 >gi|300855859|ref|YP_003780843.1| putative integrase/recombinase [Clostridium ljungdahlii DSM 13528] gi|300435974|gb|ADK15741.1| putative integrase/recombinase [Clostridium ljungdahlii DSM 13528] Length = 199 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 68/153 (44%), Gaps = 6/153 (3%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEY 213 R+ AI + Y CGLR SE + ++ + + + KG + L + A+ Y Sbjct: 34 RDLAIFRVAYRCGLRASEIGLIKLEDYNASKGAIYCKRLKGSYNNTIRLDVKTKNALDTY 93 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH--TLRHSFAT 271 N LF+ RGKP++ +++ Y + + H +++H+ A Sbjct: 94 IHESKLSSNSEF---LFKSQRGKPISRQTLDYMMKKYCSYANIYDKSKYHFHSIKHTTAV 150 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 HL + D++ +Q LGH ++ T+IY +K Sbjct: 151 HLAESDMDIKELQWWLGHKSVTNTEIYFQFTTK 183 >gi|23336338|ref|ZP_00121559.1| COG4974: Site-specific recombinase XerD [Bifidobacterium longum DJO10A] Length = 201 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 70/177 (39%), Gaps = 14/177 (7%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213 RN +L L+Y RI E +LT ++ MD + + + GK K R+VPL R + Y Sbjct: 7 RNRMLLILMYDTAARIGELAALTIADVGMDKPARVTLTGKRGKSRVVPLGERTRTHLAAY 66 Query: 214 YD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG---------LPLSTTAH 263 + P + PLF R + P R L+ +P H Sbjct: 67 LEEFHPGPSMRDGDRPLFHSTRNGAIQPLSVDRIDEILKTAAARARRGTCPSMPERVHCH 126 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 +R + A L G L I +LGH +STT + + D M + D +P Sbjct: 127 LIRRTRAMDLYQQGVPLPLIMQLLGHESMSTTSAFYAFATL---DMMRKAVDAANPG 180 >gi|329925024|ref|ZP_08279968.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp. HGF5] gi|328940143|gb|EGG36475.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp. HGF5] Length = 346 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 2/162 (1%) Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 + + +W R+ I+ L+ GLR+ E +L I + ++ + +K R Sbjct: 162 FMKAPDQRQWAQWRDYVIMTLILDTGLRLGEICALEKPEIDFVKKSITLPASKNKNRKSR 221 Query: 202 LLP-SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 LP S A L + + N + +F G+ L+ Q+ L + Sbjct: 222 TLPLSTETARLLKQLIAETERNFDTTY-VFTTNYGEQLSEKTIQKSFDNYAERAKLGRTV 280 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + H LRH+FAT NG + +Q ++GH ++TT+ Y ++ Sbjct: 281 SPHVLRHNFATMAAENGMSIFHLQKLMGHADIATTRKYVQIS 322 >gi|313201274|ref|YP_004039932.1| integrase family protein [Methylovorus sp. MP688] gi|312440590|gb|ADQ84696.1| integrase family protein [Methylovorus sp. MP688] Length = 338 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 67/317 (21%), Positives = 131/317 (41%), Gaps = 38/317 (11%) Query: 3 GNNLPEIVSFELLKER---QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKIT 59 L + +S EL + R +N N+ ++ K+ Q +E F + + +K Sbjct: 33 AQKLHDKISTELWEGRWIDRNQSGNMTLDAAFDKVMAQRWEKQRSWFSVIHNYNRFKKYL 92 Query: 60 IQTIR--QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117 + + +++ + + I + R + D ++ RS++ I + LK + E I + Sbjct: 93 KGSTKLSEITRSRLWEVIGEMREDEYTDGTINRSMAVISTILKTARDDWEVIE-KIPKVP 151 Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 LK R L + + L ++ H+ +D ++ +L G R+SE L L Sbjct: 152 LLKVGRGRMRWLKDDEELPFLEWFRKQGDHDM--VD-----LIEVLLETGCRVSEILRLK 204 Query: 178 PQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNL-----NIQLPLFRG 232 ++ ++ L L + EY L + L + I +P F G Sbjct: 205 DTDVHINERRL-------------YLGITKSGEEEYQPLSEYALQIFLRRYKIGVPPFEG 251 Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLP--LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290 + G R+ + +R+LG HT+RH+ A+ L+ +G DL+ +Q + H Sbjct: 252 VS----RWGALSRF-QTAKRHLGYADDHELVLHTMRHTCASRLVQSGVDLKRVQEYMRHK 306 Query: 291 RLSTTQIYTNVNSKNGG 307 ++TT IY ++S+ Sbjct: 307 DINTTLIYAKLSSEENA 323 >gi|300727390|ref|ZP_07060803.1| phage integrase family protein [Prevotella bryantii B14] gi|299775330|gb|EFI71927.1| phage integrase family protein [Prevotella bryantii B14] Length = 328 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 68/155 (43%), Gaps = 12/155 (7%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ A++ LL G+R+ E + L +I + GKGDK R V + K L+ Y Sbjct: 172 RDLALIDLLASTGMRVGELVRLNKNDIDYQNRECIVTGKGDKQRKV-YFDARTKIHLQKY 230 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLN----PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 D N + + L P N GV R +R+L R L +P H R + A Sbjct: 231 VNSRTDTNDALFVSLL-----SPNNRLEISGVEIR-LRRLGRELNIP-KVHPHKFRRTLA 283 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 T + G + +Q +LGH L TT Y VN N Sbjct: 284 TMAIDKGMPIEQVQHLLGHQSLDTTLQYAMVNQNN 318 >gi|262172444|ref|ZP_06040122.1| site-specific recombinase phage integrase family protein [Vibrio mimicus MB-451] gi|261893520|gb|EEY39506.1| site-specific recombinase phage integrase family protein [Vibrio mimicus MB-451] Length = 380 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 67/167 (40%), Gaps = 21/167 (12%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR----------- 207 ++ L+ G G+RISE LS S L+ + IR+ + +++ Sbjct: 188 MMALMLGTGMRISEVLSAPMSAFPSYASVLKDPNRMYSIRLDSRVMTIKNNKTRTVFIPG 247 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 + L YD L Q F + P Q+ ++ GL S T HTLRH Sbjct: 248 RLFLTIYDQVSPSLYAGNQSLFFANENHQAWTPSTIQKSFKRASNLAGLRYSITPHTLRH 307 Query: 268 SFATHLL---------SNGGDLRSIQSILGHFRLSTT-QIYTNVNSK 304 FAT L S L +Q LGH +STT IY N+ S+ Sbjct: 308 VFATGTLEQWQESGFSSEMACLIWLQKQLGHSHVSTTANIYINMTSE 354 >gi|330997656|ref|ZP_08321501.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] gi|329570184|gb|EGG51924.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] Length = 409 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 49/192 (25%), Positives = 85/192 (44%), Gaps = 24/192 (12%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 K+ + PRAL+++ + D L E + L+ Y G + +++TP Sbjct: 217 KQKETAPRALSKEDFEKIRDIELTGCRPEHSIV---RDMFLFACYA-GTSYVDVVAITPD 272 Query: 180 NIM-DDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235 N+ DD L ++ GK ++ V LLP I +Y D + + LF Sbjct: 273 NLSRDDSGALWLKYRRGKNGQLSRVKLLPEAIDLIDKYRD--------DTRATLF----- 319 Query: 236 KPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLS 293 P+ P + + ++ +G+ + H RHSF+T + L NG + ++ +LGH + Sbjct: 320 -PVIPYQALKWCLTSIKMKVGIKGRLSYHMGRHSFSTLMTLENGVPIETVSRMLGHADIR 378 Query: 294 TTQIYTNVNSKN 305 TTQ+Y V K Sbjct: 379 TTQVYARVTPKK 390 >gi|301027042|ref|ZP_07190421.1| site-specific recombinase, phage integrase family [Escherichia coli MS 196-1] gi|299879442|gb|EFI87653.1| site-specific recombinase, phage integrase family [Escherichia coli MS 196-1] Length = 147 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 76 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 119 >gi|329960271|ref|ZP_08298713.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] gi|328532944|gb|EGF59721.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] Length = 429 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 7/102 (6%) Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIR----QLRRYLG--LPLSTTAHTLRHSFATHL-LS 275 LN+ L + R + + +F Y R +L R LG T H RH+F TH+ LS Sbjct: 305 LNVPLQIIEKYRHERKSDRIFNLYCRGYLIKLTRELGRTYGFDMTFHKARHNFGTHITLS 364 Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 G + ++ ++GH +STTQIY V + + M + +QT Sbjct: 365 LGVPIETVSRMMGHKSISTTQIYAKVTDRKVDEDMKRLKEQT 406 >gi|317483230|ref|ZP_07942225.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA] gi|316915299|gb|EFV36726.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA] Length = 387 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 65/273 (23%), Positives = 115/273 (42%), Gaps = 36/273 (13%) Query: 52 FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES 111 Y EE+ + I ++ E++A+IS G S++R + + + K+ ++ Sbjct: 91 LYCEERWADRRIGTITRAEVQAWISDI-IASAGAPSVRRPYQTMLGICRMAVRDKLILDN 149 Query: 112 NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET---KWIDARNSAILYLLYGCGL 168 N+ K LPR + + LT+ + LL + E K + A A++ L CGL Sbjct: 150 PCENVELPK----LPRRKSRRVYLTI--SRLLAFADECSRGKHLGAERRALVLTLGFCGL 203 Query: 169 RISEALSLTPQNIMDDQSTLRIQG--------------KGDKIRIVPLLPSVRKAILEYY 214 R EA +L +++ + L + G K + R VP+ V +A Sbjct: 204 RWGEAAALKARDLDFGRGVLHVGGNLVYVGARWVEGTPKNSEERDVPMPLIVMEA----- 258 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPL---NPGVFQRYIRQLRRYLGLPLS--TTAHTLRHSF 269 L P +FR +RG P+ + + LG P T H LRH+ Sbjct: 259 -LKPMCGEREPDERVFRDLRGGPIMKQSAAKTTGWWYHALVCLGWPKEEWPTPHDLRHTA 317 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301 A+ + G +++++Q +LGH S T +Y ++ Sbjct: 318 ASLAVHAGANVKALQRMLGHKNASMTLDVYADL 350 >gi|116626671|ref|YP_828827.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116229833|gb|ABJ88542.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 265 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 56/127 (44%), Gaps = 4/127 (3%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213 R+ IL LY G+R +E L ++I ++ L I QGKG K R VPL P + + + Sbjct: 120 RHRTILMALYATGMRRAELCHLRIEDIDKERMVLHIRQGKGGKDREVPLPPKLLAQLRIH 179 Query: 214 YDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 Y P P + R +P+ RQ R G+ S HTLRH A+ Sbjct: 180 YRALPH--RSAWVFPSLQSRRPDQPMTEKAVWHACRQAARRAGITKSVHPHTLRHYAASR 237 Query: 273 LLSNGGD 279 + G + Sbjct: 238 TMPRGSE 244 >gi|15673214|ref|NP_267388.1| site-specific tyrosine recombinase XerS [Lactococcus lactis subsp. lactis Il1403] gi|281491737|ref|YP_003353717.1| site-specific tyrosine recombinase XerC [Lactococcus lactis subsp. lactis KF147] gi|34223004|sp|Q9CG78|XERS_LACLA RecName: Full=Tyrosine recombinase xerS gi|12724203|gb|AAK05330.1|AE006355_5 integrase-recombinase [Lactococcus lactis subsp. lactis Il1403] gi|281375451|gb|ADA64961.1| Site-specific tyrosine recombinase XerC [Lactococcus lactis subsp. lactis KF147] gi|326406772|gb|ADZ63843.1| site-specific tyrosine recombinase XerC [Lactococcus lactis subsp. lactis CV56] Length = 356 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 63/263 (23%), Positives = 106/263 (40%), Gaps = 46/263 (17%) Query: 83 IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL-------KKSNSLP-RALNEKQA 134 + ++ R+LS + S KYL + + RN+ KKS +L RA N K Sbjct: 101 VSQTTINRTLSALSSLYKYLTEEVENEDGEPYFYRNVMKKVQTKKKSETLASRAENIKGK 160 Query: 135 LTLVDNVLLHTSHETKWID----------ARNS---------AILYLLYGCGLRISEALS 175 L L D T +ID AR+S AI+ L+ G+R+SEA++ Sbjct: 161 LFLGD----ETQGFLDYIDNEYEKTLSNRARSSFFKNKERDLAIIALILASGIRLSEAVN 216 Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY-------YDLCPFDLNLNIQLP 228 + +++ + + KG K VP P + Y Y D + Sbjct: 217 VDLRDLNLITMVVEVTRKGGKRDAVPYAPFAKTYFERYLEVRSQRYKTTAKDTAFFV--T 274 Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288 L+R + + ++P ++ + + + + T H LRH+ AT L + + + LG Sbjct: 275 LYRDVPSR-IDPSSVEKLVAKYSQ--AFKVRVTPHKLRHTLATRLYAQTNSQVLVSNQLG 331 Query: 289 HFRLSTTQIYTNV---NSKNGGD 308 H T +YT++ KN D Sbjct: 332 HASTQVTDLYTHIINEEQKNALD 354 >gi|237737422|ref|ZP_04567903.1| DNA integration/recombination/invertion protein [Fusobacterium mortiferum ATCC 9817] gi|229421284|gb|EEO36331.1| DNA integration/recombination/invertion protein [Fusobacterium mortiferum ATCC 9817] Length = 350 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 86/178 (48%), Gaps = 14/178 (7%) Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL-- 188 E++ T + +L + +K + + I+ +L G+RI E +L ++I + T+ Sbjct: 173 ERKIFTQKEIEILWENLNSKTYHGKYTYIILILIYTGMRIGELFNLKTEDIDLENRTIKV 232 Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF-RGIRGKPLNPGVFQRYI 247 R+ +R +P+ + ++L F NL I F +G L+ F+ Sbjct: 233 RVSKTSAGVRTIPIFSKI-------FNL--FKDNLIIGQEYFVKGDTTTQLSYATFKPRF 283 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ-IYTNVNSK 304 ++L + LG+ T H RH+FAT L + + SI ++GH STT+ IYT+ +++ Sbjct: 284 KKLLKELGIQ-EHTIHDTRHTFATMLNNANANSTSIIRLIGHSNFSTTENIYTHKDTE 340 >gi|213648766|ref|ZP_03378819.1| site-specific recombinase, phage integrase family protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 296 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 73/309 (23%), Positives = 128/309 (41%), Gaps = 51/309 (16%) Query: 8 EIVSFE----LLKERQNWLQNLEIERGLSKL-------TLQSYECDTRQFLIFLAFYTEE 56 E V+FE ++ W R LS+L Q++E T++F L T Sbjct: 4 EAVAFERYTIAYASQKEWAGQRADRRTLSELLNIWWKYHGQNHEHGTKEFNHLLK--TIS 61 Query: 57 KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS---LSGIKSFLKYLKKRKITTESNI 113 I + ++S + + S R I ++ R LSG+ F K ++ + + + I Sbjct: 62 GIGDIPVSRMSKRALMDYRSMRLRDGISAATINRDMYRLSGM--FTKLIQLDEFSGQHPI 119 Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173 + L ++N L EK + + NVL D + + L G R +E Sbjct: 120 HGLPPLAEANPEMTFL-EKAEIEKLLNVL----------DGDDLLVALLCLSTGGRWTEV 168 Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233 +L P I + + T ++ K K R VP+ + K + E F ++ Sbjct: 169 ATLKPAQITNCRVTF-LKTKNGKKRTVPISEELEKKVKEEASAKLFKVD----------- 216 Query: 234 RGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 ++++ LRR +P + H LRH+FA+H + NGG++ ++Q ILGH + Sbjct: 217 ---------YEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASI 267 Query: 293 STTQIYTNV 301 T Y ++ Sbjct: 268 QQTMAYAHL 276 >gi|320188610|gb|EFW63272.1| Integrase [Escherichia coli O157:H7 str. EC1212] Length = 333 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 56/134 (41%), Gaps = 21/134 (15%) Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226 G R SEA L ++ + T ++ KG K R VP+ P L Sbjct: 202 GARWSEAEGLKQSQVLPGRITF-VKTKGKKNRTVPISP-----------------QLQAM 243 Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286 LP RG P F I+ R + L H LRH+FA+H + GG++ +Q I Sbjct: 244 LPKKRGALFSPCYE-AFDAAIK--RAKIELLDGQLTHVLRHTFASHFMMRGGNILVLQKI 300 Query: 287 LGHFRLSTTQIYTN 300 LGH + T Y + Sbjct: 301 LGHSDIKMTMRYAH 314 >gi|317477538|ref|ZP_07936762.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|316906292|gb|EFV28022.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 429 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 7/102 (6%) Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIR----QLRRYLG--LPLSTTAHTLRHSFATHL-LS 275 LN+ L + R + + +F Y R +L R LG T H RH+F TH+ LS Sbjct: 305 LNVPLQIIEKYRHERKSDRIFNLYCRGYLIKLTRELGRTYGFDMTFHKARHNFGTHITLS 364 Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 G + ++ ++GH +STTQIY V + + M + +QT Sbjct: 365 LGVPIETVSRMMGHKSISTTQIYAKVTDRKVDEDMKRLKEQT 406 >gi|160884309|ref|ZP_02065312.1| hypothetical protein BACOVA_02287 [Bacteroides ovatus ATCC 8483] gi|156110048|gb|EDO11793.1| hypothetical protein BACOVA_02287 [Bacteroides ovatus ATCC 8483] Length = 160 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 20/144 (13%) Query: 163 LYGC--GLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 L+ C GLRIS+ + L +NI+ D + I K K V LP +A+ LC Sbjct: 17 LFSCLTGLRISDIIRLQWENIVKGADGGWCMHIVTKKTKTEAV--LPLSDEAL----ALC 70 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 + +F+G L + Y++ + G+ T H RH++AT L+ G Sbjct: 71 ----GERTEGQVFKG-----LTKTILPLYLKDWIKSAGITKHITFHGFRHTYATLQLAAG 121 Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301 DL +I +L H + TTQ+Y +V Sbjct: 122 TDLYTISKMLTHSNVGTTQVYADV 145 >gi|139438172|ref|ZP_01771725.1| Hypothetical protein COLAER_00713 [Collinsella aerofaciens ATCC 25986] gi|133776369|gb|EBA40189.1| Hypothetical protein COLAER_00713 [Collinsella aerofaciens ATCC 25986] Length = 308 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 68/146 (46%), Gaps = 12/146 (8%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEY 213 ++ ++ GLR SEAL LTP++ TL + D +P SVRK L++ Sbjct: 141 LILIVAKTGLRFSEALGLTPEDFDFAHQTLSVNKTWDYKNGGGFVPTKNASSVRKVQLDW 200 Query: 214 ---YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 L +L P+F +GK N R + +G+P+ + H LRH+ A Sbjct: 201 QLIMQLSGLLKDLPPTEPIFA--KGKVYNSTANSVLARHCKN-VGVPV-ISVHGLRHTHA 256 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQ 296 + LL G + S+ LGH ++TTQ Sbjct: 257 SLLLFAGVSIASVSRRLGHASMTTTQ 282 >gi|49146142|ref|YP_025580.1| site-specific recombinase [Mycobacterium ulcerans Agy99] gi|42414776|emb|CAE46869.1| possible site-specific recombinase [Mycobacterium ulcerans Agy99] Length = 345 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 73/315 (23%), Positives = 127/315 (40%), Gaps = 48/315 (15%) Query: 21 WLQNLEIERGLSKL---TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA-FIS 76 W +R + K T ++Y D + LA + T+ T L+ +RA F Sbjct: 18 WFGEFLADRAIRKPSPHTTKAYRQDFEAVALLLAGGADAISTLPT-NALNKESLRAAFAV 76 Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN--SLPRALNEKQA 134 T S++R S + +L +N+L+ + +P+AL + Sbjct: 77 YAETHSAA--SIRRCWSTWNTLCTFLYT------ANLLDANPMPAIGRPKVPKALPKSYT 128 Query: 135 LTLVDNVLLH------TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----- 183 V+N++ ++ + W + R+ AI++ GLR E L NI D Sbjct: 129 ADAVNNLIAAIDTDDGSARRSNWPE-RDRAIIFTALLTGLRADE---LIRANIGDIRCNA 184 Query: 184 DQSTLRIQGKGDKIRIVP----LLPSVRKAILEYYDLCPF--------DL--NLNIQLPL 229 D L + GKG+K R +P L+ +++ + D P D+ + PL Sbjct: 185 DGGVLHVSGKGNKDRRIPCDTKLIEMLQRYLQTREDRIPHLRKRSASPDVMGRFSPTAPL 244 Query: 230 FRGIRGKPLNPGVFQRYIRQLRRYLGL----PLSTTAHTLRHSFATHLLSNGGDLRSIQS 285 F G G+ + G Q I + + G+ H LRH+FAT L + + ++ Sbjct: 245 FVGSDGERITRGTLQYRILRGFKKAGINNDRAAGALVHGLRHTFATELANANVSVYALMK 304 Query: 286 ILGHFRLSTTQIYTN 300 +LGH + T+Q Y + Sbjct: 305 LLGHESMVTSQRYVD 319 >gi|224025612|ref|ZP_03643978.1| hypothetical protein BACCOPRO_02352 [Bacteroides coprophilus DSM 18228] gi|224018848|gb|EEF76846.1| hypothetical protein BACCOPRO_02352 [Bacteroides coprophilus DSM 18228] Length = 219 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 9/113 (7%) Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 +++ K D + +PLL + + ILE Y P + LP+ P N + Y++ Sbjct: 98 KVREKTDNMCDIPLL-DIPRLILEKYQSNPICNEKGLLLPV-------PSNQRM-NSYLK 148 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 ++ G+ + + H RH+FA+ ++N L SI +LGH + TT+IY + Sbjct: 149 EIADVCGIQKNLSTHIARHTFASLAIANKVSLESIAKMLGHTDIRTTRIYAKI 201 >gi|195940604|ref|ZP_03085986.1| resolvase [Escherichia coli O157:H7 str. EC4024] Length = 241 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 40/176 (22%) Query: 159 ILYLLYGCGLRISEALSLT-------PQNIMDDQSTL------------RIQGKGDKIRI 199 +L L+ G RI+EAL+LT P +TL R+ R+ Sbjct: 45 LLATLWNTGARINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAGRMPAGQQTHRL 104 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLG-- 255 VPL S + L+ + +++P+ R R G+ +++ R +R ++G Sbjct: 105 VPLSDSWYVSQLQ-------TMVATLKIPMERRNRRTGRTEKARIWEVTDRTVRTWIGEA 157 Query: 256 ----------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+ +QS++GH +S+ ++YT V Sbjct: 158 VAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSKEVYTKV 213 >gi|189465783|ref|ZP_03014568.1| hypothetical protein BACINT_02144 [Bacteroides intestinalis DSM 17393] gi|189434047|gb|EDV03032.1| hypothetical protein BACINT_02144 [Bacteroides intestinalis DSM 17393] Length = 429 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 7/102 (6%) Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIR----QLRRYLG--LPLSTTAHTLRHSFATHL-LS 275 LN+ L + R + + +F Y R +L R LG T H RH+F TH+ LS Sbjct: 305 LNVPLQIIEKYRHERKSDRIFNLYCRGYLIKLTRELGRTYGFDMTFHKARHNFGTHITLS 364 Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 G + ++ ++GH +STTQIY V + + M + +QT Sbjct: 365 LGVPIETVSRMMGHKSISTTQIYAKVTDRKVDEDMKRLKEQT 406 >gi|189460320|ref|ZP_03009105.1| hypothetical protein BACCOP_00957 [Bacteroides coprocola DSM 17136] gi|298388052|ref|ZP_06997598.1| integrase [Bacteroides sp. 1_1_14] gi|332877186|ref|ZP_08444935.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|189433018|gb|EDV02003.1| hypothetical protein BACCOP_00957 [Bacteroides coprocola DSM 17136] gi|298259152|gb|EFI02030.1| integrase [Bacteroides sp. 1_1_14] gi|332684776|gb|EGJ57624.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 429 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 7/102 (6%) Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIR----QLRRYLG--LPLSTTAHTLRHSFATHL-LS 275 LN+ L + R + + +F Y R +L R LG T H RH+F TH+ LS Sbjct: 305 LNVPLQIIEKYRHERKSDRIFNLYCRGYLIKLTRELGRTYGFDMTFHKARHNFGTHITLS 364 Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 G + ++ ++GH +STTQIY V + + M + +QT Sbjct: 365 LGVPIETVSRMMGHKSISTTQIYAKVTDRKVDEDMKRLKEQT 406 >gi|168822775|ref|ZP_02834775.1| Rsd [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205340857|gb|EDZ27621.1| Rsd [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320089223|emb|CBY98976.1| Resolvase Protein D [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 260 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 19/44 (43%), Positives = 31/44 (70%) Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+ +Q+++GH +S+T++YT V Sbjct: 189 VPVTPHTFRHSYAMHMLYAGIPLKVLQAMMGHKSISSTEVYTKV 232 >gi|116255544|ref|YP_771377.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv. viciae 3841] gi|115260192|emb|CAK03296.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv. viciae 3841] Length = 410 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 71/283 (25%), Positives = 123/283 (43%), Gaps = 26/283 (9%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 RG SK ++ + R+FL + E + QL+++E+R +++ + + SL Sbjct: 129 RGYSKHSISGHIWSARRFL--QTIWAEHG----GVSQLTHSEVRDYLANNLDGRKSN-SL 181 Query: 89 KRSLSGIKSFLKYLKKRKITT---ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT 145 S ++ L++L+ +T + + + RNL+ S +LP ++ Q N +L Sbjct: 182 VTWYSHLRVLLRFLQASGLTELDLSAAVPSPRNLRFS-ALPAYMSVSQL-----NSVLEA 235 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 + R+ A+L LL G+R SE L+ +I LR+ GKG ++ +PL Sbjct: 236 CDLSTIPGRRDLAVLLLLSRLGMRASEVARLSLDDIDWRSGLLRVNGKGGRVATMPLPKD 295 Query: 206 VRKAILEYY-----DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLS 259 V AI +Y + +Q P P V R L+R + S Sbjct: 296 VGAAISDYILHGRPTSGSHTIFHRVQTPCTPFTTATP----VILIAGRALKRAKVTGTRS 351 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 AH RH+FAT + +G + + +L H TT+IY + Sbjct: 352 HHAHIFRHTFATIAIRSGVGMTELAQLLRHKDPDTTRIYAKFD 394 >gi|29349952|ref|NP_813455.1| transposase [Bacteroides thetaiotaomicron VPI-5482] gi|29341863|gb|AAO79649.1| transposase [Bacteroides thetaiotaomicron VPI-5482] Length = 308 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 P P ++ Y +L LG+P H LRHSFAT + G D +++ +LGH +STT Sbjct: 226 PTEPRTYRNYYTKLMEKLGIP-KLKYHGLRHSFATRCIEAGCDYKTVSVLLGHSNISTT 283 >gi|330685083|gb|EGG96750.1| site-specific recombinase, phage integrase family [Staphylococcus epidermidis VCU121] Length = 406 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 52/208 (25%), Positives = 86/208 (41%), Gaps = 32/208 (15%) Query: 132 KQALTLVDNVLLHTSHETKWIDARN----SAILYLLYGCGLRISEALSLTPQNIMDDQST 187 K+ L+ D ++ H H T+ RN AI+ G+RI E L++ +NI + T Sbjct: 193 KELLSCFDYLIKHKKHSTR---KRNYKMVKAIVQFQIANGMRIGELLAIKRENINYEDKT 249 Query: 188 LRIQGK----GDK----------------IRIVPLLPS----VRKAILEYYDLCPFDLNL 223 L I G DK R + L ++ IL+ ++ + Sbjct: 250 LDIDGTINWVTDKETGAFGVKETTKTSKSYRTIGLTTQSINLLKTLILDNKKENQWNEDF 309 Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283 + +F G P++ I++ + T HTLRH+ + L G +L++I Sbjct: 310 IDRGYVFTNTAGSPIDLNKVNSIIKEATEISSIKKRVTTHTLRHTHISTLAQLGINLKAI 369 Query: 284 QSILGHFRLSTT-QIYTNVNSKNGGDWM 310 Q +GH TT +IYT+V + D M Sbjct: 370 QERVGHSDYKTTLEIYTHVTDQMAKDMM 397 >gi|323493805|ref|ZP_08098923.1| integrase [Vibrio brasiliensis LMG 20546] gi|323311939|gb|EGA65085.1| integrase [Vibrio brasiliensis LMG 20546] Length = 342 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 30/46 (65%) Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 LP H LRH+FA+H + NGGD+ +++ ILGH ++ T Y ++ Sbjct: 263 LPKGQKVHVLRHTFASHFVMNGGDILTLKEILGHASINQTMTYAHL 308 >gi|298374817|ref|ZP_06984775.1| integrase [Bacteroides sp. 3_1_19] gi|298269185|gb|EFI10840.1| integrase [Bacteroides sp. 3_1_19] Length = 408 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 16/147 (10%) Query: 162 LLYGC--GLRISEALSLTPQNIM-DDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYD 215 L+ C GL + L P++++ D++ + I+ K +I +PLL + AIL+ Y Sbjct: 250 FLFQCWTGLAFIDVSELKPEHLVTDNEGNIWIRKARQKTKIMCNIPLL-DIPLAILDKYK 308 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274 P LP+ P N Y++++ + G+ + T HT RH+F+T + L Sbjct: 309 GYPICEKKGTLLPV-------PCNQKA-NSYLKEIADFCGIKKNLTTHTGRHTFSTVVTL 360 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV 301 +N L ++ +LGH TQ Y V Sbjct: 361 ANNVSLENVSKMLGHTNTKMTQRYAKV 387 >gi|296241818|ref|YP_003649305.1| integrase family protein [Thermosphaera aggregans DSM 11486] gi|296094402|gb|ADG90353.1| integrase family protein [Thermosphaera aggregans DSM 11486] Length = 339 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 46/134 (34%), Positives = 64/134 (47%), Gaps = 12/134 (8%) Query: 167 GLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225 GLR E L++ +I D T+R+ +GK K R V A E + L + LN Sbjct: 155 GLRSKEVLNIKVGDIDFDGRTIRVVEGKYGKERYV-------TASNETFKLIEAWVKLN- 206 Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQ 284 L R R L G + +++L G+P H LRH+FAT L G L S+Q Sbjct: 207 --NLGRDDRLVDLTYGGLYKKLKRLAAKAGIPPEKIRPHVLRHTFATRALRLGISLPSLQ 264 Query: 285 SILGHFRLSTTQIY 298 +LGH + TTQ+Y Sbjct: 265 RLLGHTDIRTTQVY 278 >gi|238785298|ref|ZP_04629288.1| hypothetical protein yberc0001_36180 [Yersinia bercovieri ATCC 43970] gi|238713811|gb|EEQ05833.1| hypothetical protein yberc0001_36180 [Yersinia bercovieri ATCC 43970] Length = 256 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 83/177 (46%), Gaps = 26/177 (14%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQ--NIMDDQSTL-------RIQGKGDKI------ 197 D R ++ L+ G R++EAL+LTP +I D + R +G+G Sbjct: 62 DLRQRLLIETLWNTGARLNEALALTPACFHIEGDSPFVVLKTLKQRQKGRGRPKEGQALK 121 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR----QLRR- 252 RIVPLL ++ Y L F PL+ G ++ + ++R + RR Sbjct: 122 RIVPLLDENYVRLVHEY-LATF--RPRKYAPLWVNEHGDTISDETPRSWLRAAVTRARRD 178 Query: 253 --YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 LP+ T T RHSFA HL+ +G + +Q+ +GH ++T++YT + + + G Sbjct: 179 GVTFSLPV-ITPKTFRHSFAMHLVQSGVAFKVVQTFMGHKDAASTEVYTRIFALDVG 234 >gi|323484865|ref|ZP_08090221.1| phage integrase family Integrase/recombinase [Clostridium symbiosum WAL-14163] gi|323401861|gb|EGA94203.1| phage integrase family Integrase/recombinase [Clostridium symbiosum WAL-14163] Length = 279 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 9/145 (6%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R I+ + G+RISE S+T Q + D + +GK ++ L+P L +Y Sbjct: 124 RICLIIQTIGSTGIRISELPSITVQAVKDGGVQVDCKGKSRQV----LMPKKLTMKLMHY 179 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHL 273 P+FR +G P++ + ++++ R G+ H LRH FA Sbjct: 180 ----IKKEKIRSGPVFRTKQGNPIDRSNIWKEMKKICRKAGIKEKKVFPHNLRHLFACSF 235 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIY 298 D+ + +LGH ++TT+IY Sbjct: 236 YQMEKDIAKLADLLGHSNINTTRIY 260 >gi|298245438|ref|ZP_06969244.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297552919|gb|EFH86784.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 184 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 8/133 (6%) Query: 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH- 144 R+++ + F +L K E+ + ++++ K L R E + + L D Sbjct: 47 RTIETYFRDVLVFFNWLVAHKHLEENPMADLKSPKTEKPLIRVFTEDELMRL-DAACDRE 105 Query: 145 ------TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 T E K + AR+ A L+LL G+RISEA L +I D + ++GKG K R Sbjct: 106 PKGRSLTQDERKALAARDRAFLWLLLSTGIRISEACGLLFADIDWDMGMIFVRGKGSKER 165 Query: 199 IVPLLPSVRKAIL 211 VP R+ ++ Sbjct: 166 KVPFGKVARQHLV 178 >gi|291515193|emb|CBK64403.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 429 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 7/102 (6%) Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIR----QLRRYLG--LPLSTTAHTLRHSFATHL-LS 275 LN+ L + R + + +F Y R +L R LG T H RH+F TH+ LS Sbjct: 305 LNVPLQIIEKYRHERKSDRIFNLYCRGYLIKLTRELGRTYGFDMTFHKARHNFGTHITLS 364 Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 G + ++ ++GH +STTQIY V + + M + +QT Sbjct: 365 LGVPIETVSRMMGHKSISTTQIYAKVTDRKVDEDMKRLKEQT 406 >gi|282858566|ref|ZP_06267736.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] gi|282588657|gb|EFB93792.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] Length = 380 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 14/142 (9%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP--LLPSVRKAILEYYDLC 217 ++ C GL + +L P+NI+ I K K + LL + K+I+ Y Sbjct: 249 FVFSCFTGLAYIDVYNLAPENIVTLNGKQWIMTKRQKTSVETNVLLLDIPKSIIAKYSGK 308 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 + LF + + LN Y++++ G+ + T H RH+FAT LS G Sbjct: 309 TYR-----DGKLFPMLTNQKLNS-----YLKEIADICGIKKNLTFHLARHTFATMSLSKG 358 Query: 278 GDLRSIQSILGHFRLSTTQIYT 299 + S+ +LGH + TTQIY Sbjct: 359 VPIESVSKMLGHTNIKTTQIYA 380 >gi|256393762|ref|YP_003115326.1| integrase family protein [Catenulispora acidiphila DSM 44928] gi|256359988|gb|ACU73485.1| integrase family protein [Catenulispora acidiphila DSM 44928] Length = 353 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 22/168 (13%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQST----LRIQ-GKGDKIRIVPLLPSVRKA 209 R+ IL LL G R++E + ++ + T LRI+ GKG + R VPL ++ + Sbjct: 175 RDEVILRLLTETGPRVAEVCAANLDDVRQHELTGMPVLRIRAGKGGRSRDVPLSQTL-VS 233 Query: 210 ILEYYD----LCPFDLNL-----NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL-- 258 +LE Y P + + L IRG+ + QR + RR +P Sbjct: 234 MLEQYQQHERPAPPAGDAEADRSDAARALLVTIRGRRMTARDVQRMVE--RRVKQMPAQL 291 Query: 259 --STTAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNS 303 + T H LRH+ AT LL G D+ ++ ILGH + TT +Y + ++ Sbjct: 292 RRAVTPHGLRHTAATVLLRQAGADVGTVADILGHADVGTTSVYLDPSA 339 >gi|227515102|ref|ZP_03945151.1| possible tyrosine recombinase [Lactobacillus fermentum ATCC 14931] gi|227086434|gb|EEI21746.1| possible tyrosine recombinase [Lactobacillus fermentum ATCC 14931] gi|299783228|gb|ADJ41226.1| Putative uncharacterized protein [Lactobacillus fermentum CECT 5716] Length = 359 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 8/153 (5%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ A++ L+ G G+R+SE + ++ TL + KG + VP+ P I Y Sbjct: 189 RDIALVALILGTGIRVSETAGVDVNDLDLKGQTLEVTRKGGQRDAVPIAPWTMPYIQAYA 248 Query: 215 DL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 + P L + G + K ++ +R + + R G PL T H LRH+ Sbjct: 249 TIRRQRYQPEKTERAFFLTHYHG-QTKRISVNGIERLVSKYSRAFGHPL--TPHKLRHTL 305 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 A+ L D + LG S T +YT+V+ Sbjct: 306 ASELYDVTKDQVLVAQQLGQKGTSATDLYTHVD 338 >gi|150401949|ref|YP_001329243.1| phage integrase family protein [Methanococcus maripaludis C7] gi|150032979|gb|ABR65092.1| phage integrase family protein [Methanococcus maripaludis C7] Length = 324 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 74/307 (24%), Positives = 133/307 (43%), Gaps = 19/307 (6%) Query: 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 +E+ ++ ER + + + D +FLAF + K T+ + + Sbjct: 21 EEQNKYIMKFREEREFDNIKPSTIKNDITSLKVFLAFCEDAKKEPYTLSTHDFVIFFNML 80 Query: 76 SKRRTQKIGDRSLKRSLSGIKSF---LKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 + RR + R+ R + +K F LKY ++ ES I R K +N Sbjct: 81 NNRRNCTV--RTQNRYFNLLKVFYRLLKYDNFKEFERES-IERKRFSKFEKKHYDTINFD 137 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 ++ ++L S R++ I+ +L+ G R SEALS+ ++ ++ RI+ Sbjct: 138 TYNRIIKEIILSNSRTR----LRDALIVRVLWETGCRRSEALSIRYKDCDFEKGRFRIRD 193 Query: 193 -KGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNI-QLPLFRGIRGKPLN--PGVFQRYI 247 K + R V + + + +Y + D N I Q + + + L+ VF++ + Sbjct: 194 TKTYEERTVVIAEETVEIVRDYIKENIRRDSNDYIFQNEMIQNGKRVKLDWITNVFKKAV 253 Query: 248 RQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 R+L+ +P H+LRH AT LL G + ++ ILGH L TT Y+ +SK Sbjct: 254 RKLKEEGVIPEGKRIVIHSLRHGRATDLLDKGVPIDVVKEILGHRSLETTLYYS--HSKE 311 Query: 306 GGDWMME 312 D M++ Sbjct: 312 RKDGMLD 318 >gi|189463345|ref|ZP_03012130.1| hypothetical protein BACCOP_04062 [Bacteroides coprocola DSM 17136] gi|189429964|gb|EDU98948.1| hypothetical protein BACCOP_04062 [Bacteroides coprocola DSM 17136] Length = 418 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 10/135 (7%) Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226 G+R + L + R+ K + V +P +A Y+LC + Sbjct: 274 GIRHCDIQKLKWSEVEQFNGGYRLNFTQQKTKGVEYMPISEQA----YNLC--GEQKEGE 327 Query: 227 LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286 L +F G+ P +P R +++ G+ T H RHS+AT L+ G D+ ++ + Sbjct: 328 LLVFAGL---P-DPSWINRPVKKWVEAAGITKHITFHCFRHSYATLQLAGGTDIYTVSKM 383 Query: 287 LGHFRLSTTQIYTNV 301 LGH + TTQ+Y V Sbjct: 384 LGHTNVRTTQVYAKV 398 >gi|307309696|ref|ZP_07589348.1| integrase family protein [Sinorhizobium meliloti BL225C] gi|306899908|gb|EFN30531.1| integrase family protein [Sinorhizobium meliloti BL225C] Length = 355 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 18/158 (11%) Query: 152 IDARNSAILYL---LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK 208 I +R+ LYL L G R+ EA++L +I + ++T + G + R VPL + Sbjct: 199 IASRSELYLYLSIFLVDTGARLGEAIALKWNDIHEGRATFWVTKSG-RSRTVPLTVRAKD 257 Query: 209 AILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 A+ D P + I +R + ++ G LG H LRH Sbjct: 258 ALKRVADRSPGPFS-RIDQQKYRAVWNAAKVDAG------------LGNEDDLVPHILRH 304 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 + A+ L+ G DLR +Q LGH L T Y ++ S + Sbjct: 305 TCASRLVRGGIDLRRVQMWLGHQTLEMTMRYAHLASHD 342 >gi|237719265|ref|ZP_04549746.1| integrase [Bacteroides sp. 2_2_4] gi|229451644|gb|EEO57435.1| integrase [Bacteroides sp. 2_2_4] Length = 420 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 38/206 (18%) Query: 102 LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161 L +K E L+ + LK +P +N L++V +V + + Sbjct: 215 LNAKKTKVERGFLSEKELKSIEEVPLPVN----LSIVRDVFV-----------------F 253 Query: 162 LLYGCGLRISEALSLTPQNI---MDDQSTLRI-QGKGDKIRIVPLL-PSVRKAILEYYDL 216 +Y GL + +LT +NI +D L + K D ++PLL P+V IL+ Y+ Sbjct: 254 AVY-TGLSFVDISNLTNENINVGIDKSLWLNYYRQKTDIHAMLPLLQPAV--CILKRYEA 310 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LS 275 N P+ P N V RY++++ + G+ + T H RH+FAT + LS Sbjct: 311 YHKGKRTNHVFPV-------PPNQ-VANRYLKKVAKEAGVEKNITFHMARHTFATTITLS 362 Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNV 301 +G + ++ +LGH + TTQIY + Sbjct: 363 HGIPIETVSKMLGHTSIKTTQIYAKI 388 >gi|219856542|ref|YP_002473664.1| hypothetical protein CKR_3199 [Clostridium kluyveri NBRC 12016] gi|219570266|dbj|BAH08250.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 204 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 16/184 (8%) Query: 127 RALNEKQALTLVDNVL-LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 + L +++A +L + +TSH R+ I + Y CGLR+SE L Q+ + Sbjct: 15 KYLTQQEAYSLFKTIENTYTSHS-----LRDLVIFRIAYRCGLRVSEIALLKMQDYNASK 69 Query: 186 STL---RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242 L R++G + L S K IL+ Y + ++ Q+ LF + P++ Sbjct: 70 GELYCRRLKGSNNN---TLRLDSKTKYILDKY-IVENNITSTSQV-LFSSQKNNPISRQT 124 Query: 243 FQRYIRQLRRYLGLPLSTTAH--TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 +++ G+ + H L+H+ A HL + D++ +Q LGH +S T+IY Sbjct: 125 LDYLMKKYCSMAGIEDKSKHHFHALKHTTAVHLAESDMDIKELQWWLGHKSVSNTEIYFQ 184 Query: 301 VNSK 304 +K Sbjct: 185 FTTK 188 >gi|160887404|ref|ZP_02068407.1| hypothetical protein BACOVA_05423 [Bacteroides ovatus ATCC 8483] gi|156107815|gb|EDO09560.1| hypothetical protein BACOVA_05423 [Bacteroides ovatus ATCC 8483] Length = 390 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 44/162 (27%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIR----------IVPL------- 202 ++ C GLR+S+ L P +I GKG+ I I+PL Sbjct: 240 FIFACFTGLRLSDMYRLAPMHIFKTAD-----GKGEYIDMEMQKTEKPVIIPLSEEAKRW 294 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 LP R + ++D+ P V R + + G+ + Sbjct: 295 LPKPRGNDIPFFDI--------------------PTTQTVIGRALHKWAEAAGIEKHISF 334 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 H RH+F T +L+ G DL + ++GH + TT+IY + K Sbjct: 335 HCSRHTFGTMMLTLGADLFTTSKLMGHSNIQTTEIYAKIVDK 376 >gi|331086494|ref|ZP_08335573.1| hypothetical protein HMPREF0987_01876 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410552|gb|EGG89980.1| hypothetical protein HMPREF0987_01876 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 409 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 77/177 (43%), Gaps = 42/177 (23%) Query: 165 GCGLRISEALSLTPQNIMDDQSTLRI--------QGKGD------------KIRIVPLLP 204 G G R+SE + L +++ D++ + I + KG RI+P+LP Sbjct: 212 GTGCRVSEVVGLRWEDVHMDENYIEINHNMVYYQRDKGKCYFSVTSPKTTAGYRIIPMLP 271 Query: 205 SVRKAIL---EYYDLCPFDLNLNIQLP---LFRGIRGKPLNPGVFQRYIRQL-------- 250 V++AIL +Y + +I +F G NP R I+++ Sbjct: 272 EVKQAILNEKKYQEEVGLTCQASIDGYTDFIFLNRNGFAHNPQTINRTIKRITLAYNEEE 331 Query: 251 ----RRYLGLPL---STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYT 299 R P+ + + H LRH+FAT N +L+ IQ I+GH ++TT +IY Sbjct: 332 IERAERERRAPVLLPNFSCHNLRHTFATRYCENETNLKVIQEIMGHKDIATTMEIYA 388 >gi|330464887|ref|YP_004402630.1| integrase family protein [Verrucosispora maris AB-18-032] gi|328807858|gb|AEB42030.1| integrase family protein [Verrucosispora maris AB-18-032] Length = 406 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 64/273 (23%), Positives = 112/273 (41%), Gaps = 52/273 (19%) Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR--- 117 + +R ++ T + ++++R + SLK + + L KI ++ ++ Sbjct: 116 RPLRAINLTSVLEWLTRRLAEGTPSTSLKLYFELLDTVLNAAVTDKIIPDNPCDGVKLSQ 175 Query: 118 NLKKSNSLPRAL-NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 L+ + P+ + E++ LTL+D V AR A ++L G G R+ EAL + Sbjct: 176 VLRGYSRAPKWVPTEREVLTLLDVV-----------PARYRAAIWLGAGQGYRLGEALGV 224 Query: 177 T--PQNIMDDQSTLRIQGKGDKIRIVP--------------------LLPSVRKAILEY- 213 P+ I ++S L + ++R P L P V + + E+ Sbjct: 225 EDGPRCIDQERSELHV---AQQLRYAPRQHDGFYLSEPKAGSSGTLDLDPVVGQVLAEHV 281 Query: 214 --YDLCPFDL-NLNIQLPLFRGI-------RGKPLNPGVFQRYIRQLRRYLGLPLS-TTA 262 + P +L +L P+ R + RG P + R R G P T Sbjct: 282 REFPPVPVELVDLTAGSPVRRSVPLLFTTTRGNPFTDRTWSREWADWRAAAGWPKEHGTF 341 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 H LRH FAT L++N + + +Q +L H L T Sbjct: 342 HALRHFFATTLITNHAEPQEVQRMLRHKTLRIT 374 >gi|167464569|ref|ZP_02329658.1| integrase family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 321 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 20/165 (12%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213 R++ I+ L+ GLR+SE ++LT ++ + T+ + KG+ R+ +E Sbjct: 151 VRDACIVSLILHSGLRVSEVVNLTLDDLDIKKKTIYVFRKGNNDGSFKTRVYFRQEAME- 209 Query: 214 YDLCPF-------------DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 DL + + L + +P R GK + Q + + + G P Sbjct: 210 -DLSRYLEIRETRYRPPKKEKALFLTIPNGRS-EGKMMTKRAMQEMVLKYAKRFGKPY-L 266 Query: 261 TAHTLRHSFAT-HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + H LRHSFAT + L N DL Q LGH TTQIY ++ K Sbjct: 267 SVHKLRHSFATDYYLQN--DLYKTQEQLGHASSDTTQIYAHLTDK 309 >gi|116662215|ref|YP_829270.1| phage integrase family protein [Arthrobacter sp. FB24] gi|116612967|gb|ABK05689.1| phage integrase family protein [Arthrobacter sp. FB24] Length = 400 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 66/150 (44%), Gaps = 13/150 (8%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV----RKAI 210 R+ A++ G R SE L LT + + + KG +++ +P P R Sbjct: 215 RDRALVAFYVSSGARASELLGLTGDRVNVGDQLIGVYRKGGQLQWLPAAPDAFVWLRLYQ 274 Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSF 269 LE P + P++ +RG+P P ++ LRR L S T H LRH+F Sbjct: 275 LEGGVAGPDE-------PVWLTLRGEP-RPLTYEAMRAVLRRCNDLLGSNWTLHDLRHTF 326 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 A L G L +Q +LGH +TT +Y Sbjct: 327 AIRALEGGMGLHEVQELLGHQSRTTTTVYA 356 >gi|330826867|ref|YP_004390170.1| integrase family protein [Alicycliphilus denitrificans K601] gi|329312239|gb|AEB86654.1| integrase family protein [Alicycliphilus denitrificans K601] Length = 310 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 62/238 (26%), Positives = 94/238 (39%), Gaps = 37/238 (15%) Query: 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVL--------L 143 L ++ F ++ + TE + + + P ++ L+ L Sbjct: 68 LGYVRGFARHHRASDPATEVPAPGLLPFRPGRARPYLYASEEIAGLLAQALQLPPVSGLR 127 Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPL 202 H +H T +L LL GLRI EAL L ++ D L ++G K + R+VP+ Sbjct: 128 HRTHHT---------LLGLLSVTGLRIGEALRLRLDDVDLDAGVLTVRGTKFGQSRLVPI 178 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTT 261 S + +L Y C + + Q P F R G PL+ G R L R +GL T Sbjct: 179 HASTCE-VLAGYRRCRAEHLGDCQSPHFFVTRTGHPLDCGDVHRTFYHLSRAVGLRGPTD 237 Query: 262 A-----HTLRHSFATHLLSNGGDLRSIQSI----------LGHFRLSTTQIYTNVNSK 304 + H RH FA L N RS Q I LGH ++ T Y + + + Sbjct: 238 SHGPRLHDFRHRFAVETLMNW--YRSEQDIERRLPVLSTYLGHVHVADTYWYLSAHPQ 293 >gi|327402602|ref|YP_004343440.1| integrase family protein [Fluviicola taffensis DSM 16823] gi|327318110|gb|AEA42602.1| integrase family protein [Fluviicola taffensis DSM 16823] Length = 405 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 16/147 (10%) Query: 162 LLYGC--GLRISEALSLTPQNI---MDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYD 215 L+ C GL ++ SLTP++I +D L ++ K + +PL P + + +Y D Sbjct: 250 FLFQCYTGLAFADLASLTPEHIQIGVDRHKWLFVERTKTNTDCRIPLFPITEEIVSKYKD 309 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274 P + N LP+ P N + Y+++L G+ + H RH++AT + L Sbjct: 310 H-PERIIKNRLLPV-------PSNQKM-NAYLKELGAICGITKNIHTHLARHTYATTVTL 360 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV 301 N + ++ +LGH ++ TTQIY V Sbjct: 361 GNNIPIETVSKLLGHKKIQTTQIYAKV 387 >gi|325104620|ref|YP_004274274.1| integrase family protein [Pedobacter saltans DSM 12145] gi|324973468|gb|ADY52452.1| integrase family protein [Pedobacter saltans DSM 12145] Length = 405 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 39/162 (24%), Positives = 78/162 (48%), Gaps = 22/162 (13%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQS----TLRIQGKGDKIRI----VPLLPSVRKAI 210 ++ +Y GLR S+ ++L +N ++ T+R G+ +I + +L + I Sbjct: 239 FIFSVYAGGLRFSDVVTLKWENFNAKENRITKTIRKTGRQHSFKIGQQALDILQQYKSEI 298 Query: 211 LEYYDLC-P-------FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 + D P F++N + + + I K + G + +R+L + + LP + + Sbjct: 299 AKPSDFIFPIIEDQELFEMNKDTEAHI---INAKNILCG---QKLRRLGKAMELPFTLSF 352 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 H RH+FAT+ L+NG + + ++ H + TQIY + S+ Sbjct: 353 HLSRHTFATNALNNGMRIEYVSKLMDHSDIGITQIYAKIISE 394 >gi|301308338|ref|ZP_07214292.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] gi|300833808|gb|EFK64424.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] Length = 380 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 62/146 (42%), Gaps = 14/146 (9%) Query: 166 CGLRISEALSLTPQNIMDDQSTLR---IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222 CGLRIS+ L +++ R + K +PL K + E D P L Sbjct: 237 CGLRISDIRKLRWRDLSMSGGQWRASVVMTKTIHPVYIPLSSQAVKWLPERGDCTPDGL- 295 Query: 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282 +F G+ N G ++ G+ + T HT RHS A LL+ G D+ + Sbjct: 296 ------VFGGLP----NEGNLCVNLKNWAEKAGVKKNVTFHTARHSCAVLLLTLGADIYT 345 Query: 283 IQSILGHFRLSTTQIYTNVNSKNGGD 308 + ILGH + +TQ+Y + K D Sbjct: 346 VSKILGHRSVRSTQVYAKIVDKKKDD 371 >gi|291559720|emb|CBL38520.1| Site-specific recombinase XerD [butyrate-producing bacterium SSC/2] Length = 363 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 62/289 (21%), Positives = 126/289 (43%), Gaps = 35/289 (12%) Query: 38 SYECDTRQFLIFLA-------------FYTEEKITIQTIRQLSYTE-IRAFISKRRTQKI 83 +Y D R F FL F + I+++ Y E ++ +IS+ + + + Sbjct: 47 AYAYDLRVFFHFLIDENPAYRNYSVLDFKVSDLDKIESVDLEEYMEYLKVYISEEQHKHM 106 Query: 84 --GDRSLKRSLSGIKSFLKYLKKRKITTESNIL--NMRNLKKSNSLPRALNEKQALTLVD 139 ++ + R +S ++SF Y KR++ ++ L +M +++ + L + +L+D Sbjct: 107 QNTEQGVFRKMSALRSFYGYFYKRQLIEKNPTLLVDMPKIREKEII--RLEADEVASLLD 164 Query: 140 NVLLHTSHET-------KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 V H T + R+ AI+ LL G G+R+SE + L ++ + L + Sbjct: 165 FVEHGGDHLTGQKLAYYEKTKERDLAIITLLLGTGIRVSELVGLNVDDVDFRNNGLHLIR 224 Query: 193 KGDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 KG K V V A+ +Y + + P + + + LF ++ + + Q + Sbjct: 225 KGRKEMTVYFGNEVADALEQYIEGSRKLIIPKEGHED---ALFYSMQRRRIGVQAVQNLV 281 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 ++ + + T H LR ++ T L D+ + +LGH ++TT+ Sbjct: 282 KKYAKEVTPLKKITPHKLRSTYGTALYQETDDIYLVAEVLGHSDVNTTR 330 >gi|170680409|ref|YP_001746252.1| phage integrase family site specific recombinase [Escherichia coli SMS-3-5] gi|213417372|ref|ZP_03350514.1| site-specific recombinase, phage integrase family protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|170518127|gb|ACB16305.1| site-specific recombinase, phage integrase family [Escherichia coli SMS-3-5] Length = 326 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 73/309 (23%), Positives = 128/309 (41%), Gaps = 51/309 (16%) Query: 8 EIVSFE----LLKERQNWLQNLEIERGLSKL-------TLQSYECDTRQFLIFLAFYTEE 56 E V+FE ++ W R LS+L Q++E T++F L T Sbjct: 34 EAVAFERYTIAYASQKEWAGQRADRRTLSELLNIWWKYHGQNHEHGTKEFNHLLK--TIS 91 Query: 57 KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS---LSGIKSFLKYLKKRKITTESNI 113 I + ++S + + S R I ++ R LSG+ F K ++ + + + I Sbjct: 92 GIGDIPVSRMSKRALMDYRSMRLRDGISAATINRDMYRLSGM--FTKLIQLDEFSGQHPI 149 Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173 + L ++N L EK + + NVL D + + L G R +E Sbjct: 150 HGLPPLAEANPEMTFL-EKAEIEKLLNVL----------DGDDLLVALLCLSTGGRWTEV 198 Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233 +L P I + + T ++ K K R VP+ + K + E F ++ Sbjct: 199 ATLKPAQITNCRVTF-LKTKNGKKRTVPISEELEKKVKEEASAKLFKVD----------- 246 Query: 234 RGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 ++++ LRR +P + H LRH+FA+H + NGG++ ++Q ILGH + Sbjct: 247 ---------YEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASI 297 Query: 293 STTQIYTNV 301 T Y ++ Sbjct: 298 QQTMAYAHL 306 >gi|312862667|ref|ZP_07722907.1| site-specific tyrosine recombinase XerS [Streptococcus vestibularis F0396] gi|311101527|gb|EFQ59730.1| site-specific tyrosine recombinase XerS [Streptococcus vestibularis F0396] Length = 356 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 66/292 (22%), Positives = 119/292 (40%), Gaps = 44/292 (15%) Query: 58 ITIQTIRQLSYTEIRAFI----------SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI 107 I I+T+ L+ ++ +F+ + + Q + ++ R+LS + S KYL + Sbjct: 66 IDIKTLENLTKKDMESFVLYLRERPSLNTYSKKQGVSQTTINRTLSALSSLYKYLTEEVE 125 Query: 108 TTESNILNMRNLKKSNSL--------PRALNEKQALTLVDNVL-----LHTSHETKWID- 153 + RN+ K S RA N KQ L L D + + +E K + Sbjct: 126 GPDGEPYFYRNVMKKVSTKKKKETLAARAENIKQKLFLGDETMDFLDYVENEYEVKLSNR 185 Query: 154 ---------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 R+ AI+ LL G+R+SEA++L ++I + + KG K V + Sbjct: 186 AKSSFYKNKERDLAIIALLLASGVRLSEAVNLDLKDINLKMMVIDVTRKGGKRDSVNVAS 245 Query: 205 SVRKAILEYYDL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 R + Y ++ +L + L +RG+ + ++ ++ + + + + Sbjct: 246 FARPYLENYLNIRDKRYKAEKQDLALFLTEYRGVPNR-IDASSIEKMVAKYSQ--DFKIR 302 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV---NSKNGGD 308 T H LRH+ AT L + LGH T +YT++ KN D Sbjct: 303 VTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354 >gi|301164997|emb|CBW24563.1| putative bacteriophage integrase [Bacteroides fragilis 638R] Length = 452 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 14/149 (9%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLL-PSVR--------K 208 + + CGLR+ + ++L ++I + LR I K +K ++PL P++R + Sbjct: 279 FFFAFHACGLRVVDVMTLQWKHIDFARKELRKIMIKTNKRHVIPLTEPALRILQQWQEKR 338 Query: 209 AILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 A Y +DL L+L+ L++ + + + +GLP S + H RH Sbjct: 339 AGCRYVFDLVKETLDLDDAEALYKARNNAT---KCINQSLAVVGEQIGLPFSLSMHAARH 395 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 SFA L+ G + + +LGH T+ Sbjct: 396 SFAVFALNKGLSMSVVSRLLGHGSTDVTE 424 >gi|291531297|emb|CBK96882.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3] Length = 476 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 62/263 (23%), Positives = 113/263 (42%), Gaps = 39/263 (14%) Query: 65 QLSYTEIRAFISKRRT-------QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR 117 +LS ++++ F +K +T + G R++ GI + + +R + + ++ Sbjct: 117 RLSQSDLQQFYAKEKTDGRKLHAKTYGKGLSDRTIRGIHANCRTALQRAV--QEGLIRTN 174 Query: 118 NLKKSNSLPRALNEKQALTLVDNV-LLHTSHETKWIDARNSAILYLL-YGCGLRISEALS 175 LP+ E Q LT + + LH + E + L+LL G G+R E L+ Sbjct: 175 PAVGCKLLPKKAREMQVLTQNEIIRFLHQAKEEGCYE------LFLLELGTGMRRGEILA 228 Query: 176 LTPQNIMDDQSTLRIQGK---------------GDKIRIVPLLPSVRKAILEYYDLCPFD 220 L ++ LRI+ + IR V L PS+ K ++ Y + D Sbjct: 229 LKWSDLNFATGELRIERQVYIIKAEVIISAPKTKASIRTVILPPSLLKTLVAYKET--VD 286 Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280 P G +P NP ++ ++ + G H LRH+FAT L +G D+ Sbjct: 287 SEWMFPSPTDNG---RPRNPSSVRKRLQLILERAGCK-KVRFHDLRHTFATMALEHGMDV 342 Query: 281 RSIQSILGHFRLSTT-QIYTNVN 302 +++ + +GH +TT IY+++ Sbjct: 343 KTLSATIGHVSSATTLDIYSHIT 365 >gi|212694197|ref|ZP_03302325.1| hypothetical protein BACDOR_03723 [Bacteroides dorei DSM 17855] gi|212663263|gb|EEB23837.1| hypothetical protein BACDOR_03723 [Bacteroides dorei DSM 17855] Length = 229 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 30/149 (20%) Query: 163 LYGC--GLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 L+ C GLR+S+ + L +NI+ D + I K K +LP +A+ LC Sbjct: 76 LFSCLTGLRLSDCIRLQWENIVKLADGGWGMDIITK--KTSTAAILPISEEAL----QLC 129 Query: 218 PFDLNLNIQLPLFRGIRG-----KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 G RG K L Y++ + G+ T H RH+FAT Sbjct: 130 --------------GERGTGQVFKNLTNSTVALYLKPWIKASGIEKHITFHCFRHTFATL 175 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 L+ G D+ ++ +L H L+TTQ+Y +V Sbjct: 176 QLAEGTDIYTVSKLLTHSNLATTQVYADV 204 >gi|109948086|ref|YP_665314.1| bacteriophage-related integrase [Helicobacter acinonychis str. Sheeba] gi|109715307|emb|CAK00315.1| bacteriophage-related integrase [Helicobacter acinonychis str. Sheeba] Length = 378 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 75/282 (26%), Positives = 119/282 (42%), Gaps = 44/282 (15%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 GL +L S E IF A +E +Q I + E A ++ Q+ +LK Sbjct: 102 GLKNTSLHSLEIVFNS--IFSAMGLKESAKLQKITK----EAIAKYHEQALQRYKKNTLK 155 Query: 90 RSLSGIKSFLKYLKKRKITTESN---ILNMRNLKKSNSL-PRALNEKQALTLVDNVLLHT 145 + +KSFL + + E N + ++N K++ + P +L E +A+ + N Sbjct: 156 TQHANLKSFLAFCESEGYL-EKNPYFAVTLKNAKEAKKIEPFSLEEVEAI--IKNA---P 209 Query: 146 SHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK------------ 193 S K A L + + G+R E L+LT ++I D T+ I Sbjct: 210 SLSLK-------AFLMVAFLTGMRTGEQLALTWEDIDFDHQTISINKSLNEWGQITSPKN 262 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 + +R V LL K + E P +F G+ P VFQR R+L + Sbjct: 263 QNSVREVDLLEPAAKILKELKKSEPAGKKF-----VFIGM---PRRTSVFQRRFRELLKA 314 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 L L +T RH+FA+ +LS G + + +LGH L+TT Sbjct: 315 LDLK-DRKLYTTRHTFASLMLSQGEEPMWVSKMLGHKDLNTT 355 >gi|330399609|ref|YP_004030707.1| hypothetical protein RBRH_03374 [Burkholderia rhizoxinica HKI 454] gi|312170346|emb|CBW77385.1| Hypothetical protein RBRH_03374 [Burkholderia rhizoxinica HKI 454] Length = 483 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 67/164 (40%), Gaps = 28/164 (17%) Query: 162 LLYGCGLRISEALSLTPQNIM-------DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 L Y GLR+SE T + DQ L I GKG + R VP P + + Y Sbjct: 286 LFYLQGLRLSEVAHGTMGDFSRRLGPDGHDQWWLDIVGKGQRARRVPASPELIVELARYR 345 Query: 215 DLC--PFDLNLNIQLPL---FRGIRGKPLNPGVFQRYIRQLRRYLGLPLST--------- 260 C P PL FRG R + L+ I+++ R L Sbjct: 346 QACGLPSLPRRAEDTPLVVPFRGPR-RGLSRSALHDAIKRIFRDAASWLRARGPAFADRA 404 Query: 261 ------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 +AH LRH+ +H G DLR+++ LGH L+TT +Y Sbjct: 405 DELVRASAHWLRHTAGSHQADGGLDLRTVRDNLGHVSLTTTSLY 448 >gi|167991593|ref|ZP_02572692.1| site-specific recombinase, phage integrase family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205330049|gb|EDZ16813.1| site-specific recombinase, phage integrase family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] Length = 326 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 1/60 (1%) Query: 243 FQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 ++++ LRR +P + H LRH+FA+H + NGG++ ++Q ILGH + T Y ++ Sbjct: 247 YEKFCEILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQTMTYAHL 306 >gi|53715557|ref|YP_101549.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|60683504|ref|YP_213648.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343] gi|52218422|dbj|BAD51015.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|60494938|emb|CAH09754.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343] Length = 452 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 14/149 (9%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLL-PSVR--------K 208 + + CGLR+ + ++L ++I + LR I K +K ++PL P++R + Sbjct: 279 FFFAFHACGLRVVDVMTLQWKHIDFARKELRKIMIKTNKRHVIPLTEPALRILQQWQEKR 338 Query: 209 AILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 A Y +DL L+L+ L++ + + + +GLP S + H RH Sbjct: 339 AGCRYVFDLVKETLDLDDAEALYKARNNAT---KCINQSLAVVGEQIGLPFSLSMHAARH 395 Query: 268 SFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 SFA L+ G + + +LGH T+ Sbjct: 396 SFAVFALNKGLSMSVVSRLLGHGSTDVTE 424 >gi|300703260|ref|YP_003744862.1| phage integrase [Ralstonia solanacearum CFBP2957] gi|299070923|emb|CBJ42228.1| putative phage integrase [Ralstonia solanacearum CFBP2957] Length = 288 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 62/137 (45%), Gaps = 19/137 (13%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQST---------LRIQGKGDKIRIVPLLPS 205 RN +++ LL G RI+EAL LT NI D S + + GKG K R VP+ Sbjct: 83 RNISLIELLICSGFRIAEALGLTIYNIPDPDSAAYAGRAVVPVVVIGKGRKKRSVPIPKR 142 Query: 206 VRKAILEYYDLCPFDLNLNIQ--------LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 V +AI Y D Q LF G+PL+ + + + +Q GL Sbjct: 143 VIRAINFYIDEDRKVAAAKYQSRNRGKEATRLFLAKTGEPLSVRMVEEWFQQTSEATGLK 202 Query: 258 LSTTAHTLRHSFATHLL 274 L T H RH++AT +L Sbjct: 203 L--TPHGCRHTYATIML 217 >gi|150010080|ref|YP_001304823.1| integrase [Parabacteroides distasonis ATCC 8503] gi|149938504|gb|ABR45201.1| integrase [Parabacteroides distasonis ATCC 8503] Length = 402 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 31/152 (20%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219 ++GC G+ + +LT NI++ + I K K + PF Sbjct: 248 FIFGCWTGISFVDIKNLTTDNIVELNGSRWIVSKRQKTGV------------------PF 289 Query: 220 DLNLNIQLPLFRGIRGKPLNPG----------VFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 + L + +P R KP G + R I+ + + G+ + + H RHSF Sbjct: 290 QIKL-MDIPAQIIERNKPFRNGKNLFNINSYDMVNRRIKTVAKMCGIEKNISFHLSRHSF 348 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 A L+ G + S+ ILGH ++TTQIY V Sbjct: 349 AVLALNYGMPIESVSKILGHTNITTTQIYAKV 380 >gi|94266109|ref|ZP_01289825.1| Phage integrase [delta proteobacterium MLMS-1] gi|93453327|gb|EAT03764.1| Phage integrase [delta proteobacterium MLMS-1] Length = 379 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 26/151 (17%) Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCP 218 L LL GC R SE L+ ++ + + RI K K R VPL + + + L P Sbjct: 235 LLLLLGC--RKSELLNSRWEDFDLARRSWRIPLSKSGKARYVPLSTAALEVLASIPRLSP 292 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY------LGLPLSTTAHTLRHSFATH 272 + + NP Q ++ R + GLP H LRHSFA+ Sbjct: 293 YVVP----------------NPKTLQPFVSVFRSWDTARKKAGLP-DVRMHDLRHSFASF 335 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 L+++G + + +LGH +L TTQ Y+++++ Sbjct: 336 LVNSGRSIYEVSQLLGHSQLKTTQRYSHLSN 366 >gi|150019248|ref|YP_001311502.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] gi|149905713|gb|ABR36546.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] Length = 199 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 46/184 (25%), Positives = 85/184 (46%), Gaps = 16/184 (8%) Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 + L +K+ L+L + + + K R+ AI L Y CGLR SE L +N ++ Sbjct: 10 KYLTQKEVLSLFNAI----ENSGKLHSTRDLAIFRLAYRCGLRASEISMLKLENYNINKG 65 Query: 187 TL---RIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242 + R++G K + +R L K++L+ Y + ++ Q +F + KP++ Sbjct: 66 EIYCKRLKGSKNNTLR----LDEKTKSVLDKY-ITENEITSESQ-TIFTSQKNKPISRQT 119 Query: 243 FQRYIRQLRRYLGLPLSTTAH--TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 +Q + + H T++H+ A HL D++ +Q LGH ++ T+IY Sbjct: 120 LDHLTKQYFSMASIQDKSKHHFHTIKHTTAVHLAECDMDIKELQWWLGHKSVTNTEIYFQ 179 Query: 301 VNSK 304 +K Sbjct: 180 FTTK 183 >gi|300938277|ref|ZP_07153042.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 21-1] gi|300456732|gb|EFK20225.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 21-1] Length = 184 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 64/151 (42%), Gaps = 1/151 (0%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILE 212 AR+ ++ L Y G+RISE L L Q++ ++ + I+ + V PL R+A+ Sbjct: 12 ARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVER 71 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 + + +F RG L+ R IR G T H LRH+ Sbjct: 72 WTQERANWKGADWTDAIFISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGYE 131 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 L G D R IQ LGH + T YT N+ Sbjct: 132 LAERGADTRLIQDYLGHRNIRHTVRYTASNA 162 >gi|257064282|ref|YP_003143954.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM 20476] gi|256791935|gb|ACV22605.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM 20476] Length = 398 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 58/213 (27%), Positives = 85/213 (39%), Gaps = 29/213 (13%) Query: 118 NLKKSNSLPR-ALNEKQALTLVDNVLLHTSHETKWIDARNSA----------ILYLLYGC 166 N S S PR A E +ALT + +L E + D A +L Sbjct: 164 NPAASASKPRPARAEARALTEGEISILAAELEARMADGSRDADGIRRRTVAFAAWLALNT 223 Query: 167 GLRISEALSLTPQNI---MDD---QSTLRIQGKG----------DKIRIVPLLPSVRKAI 210 G+R EA +L+ ++ + D T+ G +R V + PS +A Sbjct: 224 GVRCGEACALSRSDVSLPLGDLYVHCTMTEPAGGPPARSRAKTASSVRHVLMGPSAAQAA 283 Query: 211 LEYYDLCPFDLNLNIQ-LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 E+ L + PL G + P R LR +GLP T HTLRH+ Sbjct: 284 AEHIAWQDSWLPAARRDAPLLCAPDGSWMRPSAVSRGFSALRDEVGLPRDTHFHTLRHTH 343 Query: 270 ATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNV 301 ATHLL G + + LGH +++ T + Y +V Sbjct: 344 ATHLLREGVPMNEVSRRLGHSKVALTLEWYGHV 376 >gi|221215358|ref|ZP_03588323.1| phage integrase family protein [Burkholderia multivorans CGD1] gi|221164790|gb|EED97271.1| phage integrase family protein [Burkholderia multivorans CGD1] Length = 613 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 75/352 (21%), Positives = 130/352 (36%), Gaps = 99/352 (28%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 +ERG++ ++Q +C+ + FLA + +++ A + R + G Sbjct: 270 VERGVALSSMQVEDCEA--YKAFLAAPSA-----------AFSGPPASRASGRWRPFGPG 316 Query: 87 SLK-----RSLSGIKSFLKYLKKRK---------ITTESNILNMRNLKKSNSLPRALNEK 132 L ++ I++ ++L K + + + + + ++ S +LP L + Sbjct: 317 GLSLESQLYAVRAIRAAFEWLVKVRYLAGNPWAAVVDPKPVKHAKRMQVSRALPVDLWAR 376 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA-------LSLTPQNI-MDD 184 L D H ++W AR A+L L+ GLRI+EA L L P + + Sbjct: 377 TRAALADWSEGSGPHASRWRAAR--ALLLLMGDAGLRIAEATAASRDALELHPADGEIPA 434 Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN---------LNIQLPLF----- 230 LR+ GK K R VPL + A+ ++ D + + + PL Sbjct: 435 TWELRVIGKRRKERFVPLSGTCIDALRAHWRDRGMDFDAADGTGRSDVALIAPLVIPRTP 494 Query: 231 --------------------------RGIRGKPLNPGVFQRYIRQL------------RR 252 RG RG + Q + QL RR Sbjct: 495 RAREKFARNDDASNGAAQKTGTGYSVRGARG------LAQWAVEQLLEKMPDLTEPERRR 548 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 +G+ + H RH+F T ++ L +Q +LGH L TT +Y K Sbjct: 549 LVGV----SPHAFRHTFGTQSVATDVPLDVVQQLLGHASLQTTSVYVTAEEK 596 >gi|315647380|ref|ZP_07900493.1| prophage LambdaBa03, site-specific recombinase, phage integrase family protein [Paenibacillus vortex V453] gi|315277582|gb|EFU40911.1| prophage LambdaBa03, site-specific recombinase, phage integrase family protein [Paenibacillus vortex V453] Length = 202 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 14/147 (9%) Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210 ++ RN IL G+R E +L+ ++ D S ++I GKG+K R + + P ++K I Sbjct: 31 YLSLRNKLILMFFVDLGIRNLELCTLSSLDVRD--SVIKIHGKGNKERHLYISPLLKKYI 88 Query: 211 LEYYDL--CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ------LRRYLGLPLSTTA 262 ++Y + F + F GK L + +++ +R+++ + Sbjct: 89 IKYERVKEAYFKDKIMTDSSFFLSQNGKTLTVVAIEVVVKKAGAEAKVRKHI----RCSP 144 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGH 289 HTLRH +A L G D+ S+ +LGH Sbjct: 145 HTLRHYYAQKQLRLGLDVYSLSRLLGH 171 >gi|293372242|ref|ZP_06618627.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292632684|gb|EFF51277.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 436 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 38/206 (18%) Query: 102 LKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILY 161 L +K E L+ + LK +P +N L++V +V + + Sbjct: 231 LNAKKTKVERGFLSEKELKSIEEVPLPVN----LSIVRDVFV-----------------F 269 Query: 162 LLYGCGLRISEALSLTPQNI---MDDQSTLRI-QGKGDKIRIVPLL-PSVRKAILEYYDL 216 +Y GL + +LT +NI +D L + K D ++PLL P+V IL+ Y+ Sbjct: 270 AVY-TGLSFVDISNLTNENINVGIDKSLWLNYYRQKTDIHAMLPLLQPAV--CILKRYEA 326 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LS 275 N P+ P N V RY++++ + G+ + T H RH+FAT + LS Sbjct: 327 YHKGKRTNHVFPV-------PPNQ-VANRYLKKVAKEAGVEKNITFHMARHTFATTITLS 378 Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNV 301 +G + ++ +LGH + TTQIY + Sbjct: 379 HGIPIETVSKMLGHTSIKTTQIYAKI 404 >gi|293373142|ref|ZP_06619506.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292631913|gb|EFF50527.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 386 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 36/57 (63%) Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +Y+R+L+ G+ T H RH+ A+ +S G D+ +++ +LGH +++T++Y V Sbjct: 313 KYVRRLKEKAGIEKDLTYHCSRHTTASLAISAGADISAVKDVLGHGSITSTEVYAKV 369 >gi|259419438|ref|ZP_05743354.1| putative transposase B [Silicibacter sp. TrichCH4B] gi|259344679|gb|EEW56566.1| putative transposase B [Silicibacter sp. TrichCH4B] Length = 695 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 78/315 (24%), Positives = 131/315 (41%), Gaps = 52/315 (16%) Query: 25 LEIER-GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83 LEI+R LS++T+ R+F+ FL + + I+ ++ + AF+ R+Q + Sbjct: 254 LEIKRTSLSRVTVDHCAVSLRRFVDFLVRHDPK---IEKFANVTSEVMTAFLIDLRSQ-V 309 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESN-----------ILNMRNLKK-SNSLPRALNE 131 G R+ KR+LS + L + +E +LN R+L + LPR + Sbjct: 310 GART-KRTLSITAQRSRALHVAQFLSEGAAWEWPDFPTRPVLNTRDLPRLPQRLPRYIPA 368 Query: 132 KQALTLVDNVL-LHTSHE------TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184 +Q L++ V L + +W AR + I L C L P D Sbjct: 369 EQLGPLMEEVRKLPCDFQRAAILTARWSGARRTEIARLPVDC-------LDAYP----DG 417 Query: 185 QSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDL--------CPFDLNLNIQLPLFRGIRG 235 LRI GK + R+VPL P + + + +L P D + L RG Sbjct: 418 TPRLRIPAGKTYRERLVPLHPEAAETLRKVIELRAKSDERPVP-DARTGQYVKLLFYRRG 476 Query: 236 KPLNPG-VFQRYIRQLRRYLGLPLS-----TTAHTLRHSFATHLLSNGGDLRSIQSILGH 289 ++P +F ++ + LGL +AH RH+ T L G +++I +LGH Sbjct: 477 VAISPDYLFNYPLKDISHRLGLIDGKGQNLISAHRFRHTVGTELAEGGARMQTIMDVLGH 536 Query: 290 FRLSTTQIYTNVNSK 304 + +Y V+ + Sbjct: 537 QSPHMSMVYIRVSDE 551 >gi|238786957|ref|ZP_04630757.1| Integrase [Yersinia frederiksenii ATCC 33641] gi|238724745|gb|EEQ16385.1| Integrase [Yersinia frederiksenii ATCC 33641] Length = 334 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 60/142 (42%), Gaps = 21/142 (14%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 I+ L G R EA + I+ + T I KG K R VP+ + K I Sbjct: 193 IVRLCLATGARWGEAQDMKQSQILPSRVTY-INTKGKKNRTVPISEKLFKRI-------- 243 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278 P RG P + F+ ++ R + LP H LRH+FA+H + GG Sbjct: 244 ---------PKNRGALFTP-SYDAFKHALK--RAAIELPKGQRTHVLRHTFASHFMMGGG 291 Query: 279 DLRSIQSILGHFRLSTTQIYTN 300 ++ +Q ILGH + T Y + Sbjct: 292 NILVLQQILGHSTILMTMRYAH 313 >gi|255527617|ref|ZP_05394479.1| integrase family protein [Clostridium carboxidivorans P7] gi|296187660|ref|ZP_06856054.1| site-specific recombinase, phage integrase family [Clostridium carboxidivorans P7] gi|255508689|gb|EET85067.1| integrase family protein [Clostridium carboxidivorans P7] gi|296047617|gb|EFG87057.1| site-specific recombinase, phage integrase family [Clostridium carboxidivorans P7] Length = 329 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 12/157 (7%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212 + R+ AI+ LL G+R+ E + L +I ++ ++GKGDK R V + K L+ Sbjct: 171 EIRDLAIIDLLNSTGIRVGELVKLNIDDIDFNERECIVEGKGDKQRRV-YFDARTKIHLQ 229 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLN----PGVFQRYIRQLRRYLGLPLSTTAHTLRHS 268 Y D N + + L +P N GV R +R L + L + H R + Sbjct: 230 NYINSRVDNNRALFVSLI-----EPYNRLNISGVEIR-MRSLGKKLNIN-KVHPHKFRRT 282 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 AT + G + +Q +LGH ++ TT Y VN N Sbjct: 283 LATRAIDKGMPIEQVQQLLGHQKIDTTLQYAMVNQNN 319 >gi|254039131|ref|ZP_04873181.1| integrase [Escherichia sp. 1_1_43] gi|226838567|gb|EEH70596.1| integrase [Escherichia sp. 1_1_43] Length = 326 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 73/309 (23%), Positives = 128/309 (41%), Gaps = 51/309 (16%) Query: 8 EIVSFE----LLKERQNWLQNLEIERGLSKL-------TLQSYECDTRQFLIFLAFYTEE 56 E V+FE ++ W R LS+L Q++E T++F L T Sbjct: 34 EAVAFERYTIAYASQKEWAGQRADRRTLSELLDIWWKYHGQNHEHGTKEFNHLLK--TIS 91 Query: 57 KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS---LSGIKSFLKYLKKRKITTESNI 113 I + ++S + + S R I ++ R LSG+ F K ++ + + + I Sbjct: 92 GIGDIPVSRMSKRALMDYRSMRLRDGISAATINRDMYRLSGM--FTKLIQLDEFSGQHPI 149 Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173 + L ++N L EK + + NVL D + + L G R +E Sbjct: 150 HGLPPLAEANPEMTFL-EKAEIEKLLNVL----------DGDDLLVALLCLSTGGRWTEV 198 Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233 +L P I + + T ++ K K R VP+ + K + E F ++ Sbjct: 199 ATLKPAQITNCRVTF-LKTKNGKKRTVPISEELEKKVKEEASAKLFKVD----------- 246 Query: 234 RGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 ++++ LRR +P + H LRH+FA+H + NGG++ ++Q ILGH + Sbjct: 247 ---------YEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASI 297 Query: 293 STTQIYTNV 301 T Y ++ Sbjct: 298 QQTMAYAHL 306 >gi|295135380|ref|YP_003586056.1| tyrosine type site-specific recombinase [Zunongwangia profunda SM-A87] gi|294983395|gb|ADF53860.1| tyrosine type site-specific recombinase [Zunongwangia profunda SM-A87] Length = 232 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 16/147 (10%) Query: 162 LLYGC--GLRISEALSLTPQNI---MDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYD 215 ++ C GL S+ L+ +I +D + +R + K + +P+LP V + IL+ Y Sbjct: 46 FIFSCFTGLAYSDVKKLSNSDITIGIDGEKWIRTKRTKTKTLSSIPILP-VAEEILDRYK 104 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274 P N + LP+ + +++++ + T H RH+FAT + L Sbjct: 105 NHPEVKNSDFILPVLSNQKS--------NAFLKEIALMCDIKKPLTTHVARHTFATTITL 156 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV 301 +NG + S+ +LGH L TTQ Y + Sbjct: 157 TNGVPIESVSKMLGHKDLRTTQHYAKI 183 >gi|228469599|ref|ZP_04054586.1| integrase [Porphyromonas uenonis 60-3] gi|228308852|gb|EEK17539.1| integrase [Porphyromonas uenonis 60-3] Length = 261 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 1/63 (1%) Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 NP V Q+ +++++R G+ T H RH+FAT L+ G L ++ S+LGH LSTT+IY Sbjct: 177 NPYVNQQ-LKEIQRLSGVKRVLTYHLARHTFATLALTKGVSLDTVGSVLGHSCLSTTRIY 235 Query: 299 TNV 301 V Sbjct: 236 ARV 238 >gi|213583107|ref|ZP_03364933.1| Tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 48 Score = 49.3 bits (116), Expect = 9e-04, Method: Composition-based stats. Identities = 25/50 (50%), Positives = 36/50 (72%), Gaps = 4/50 (8%) Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 ATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++ Q HP Sbjct: 1 ATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLHQQHHP 46 >gi|81428201|ref|YP_395201.1| site-specific recombinase, prophage lsa1 integrase [Lactobacillus sakei subsp. sakei 23K] gi|78609843|emb|CAI54890.1| Site-specific recombinase, prophage lsa1 integrase [Lactobacillus sakei subsp. sakei 23K] Length = 385 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 61/216 (28%), Positives = 94/216 (43%), Gaps = 37/216 (17%) Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC----GLRISEALSLTPQ 179 ++P+ L+++ L D L T ID N Y L+ G+R E LSLT Sbjct: 161 TMPKKLDKEDTLNFWDKDQLKTFFNG--IDPVNDLEKYTLFRVLAFTGIRRGECLSLTWD 218 Query: 180 NIMDDQSTLRIQG---KGDK-------------IRIVPLLPS----VRKAILE---YYDL 216 ++ ++TL I GDK R++ L S ++K LE Y + Sbjct: 219 DLNVQKATLDINKTLTHGDKGRLLIQPTKTKKGTRVISLDESTLLYLKKWHLEQRRMYLM 278 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-----RRYLGLPLSTTAHTLRHSFAT 271 +++N + QL +F + + +++R L + LP S T H RHS A+ Sbjct: 279 LGYNINKSNQL-IFATSKNTFKSLNTPSKWLRALIDDANKSGANLP-SITVHGFRHSHAS 336 Query: 272 HLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNG 306 L S G ++ +Q LGH TT IYT+V K G Sbjct: 337 ALFSAGASIKEVQERLGHEDAQTTLNIYTHVTEKQG 372 >gi|170717950|ref|YP_001784999.1| phage integrase family protein [Haemophilus somnus 2336] gi|168826079|gb|ACA31450.1| phage integrase family protein [Haemophilus somnus 2336] Length = 299 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 72/156 (46%), Gaps = 18/156 (11%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK---IRIVP----LLPSVRKAI 210 A++Y L +R S+ L L +I + I+ + +K +P L P +++ I Sbjct: 136 ALIYTLKYTAIRQSQLLQLKISDIDMTSKIINIRAETNKNHEHHEIPISDKLYPYLKRLI 195 Query: 211 LEY------YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 LE D F++N + L R K + G + R + ++G + T+H Sbjct: 196 LESRARSTSSDEQLFNIN---RFSLVTTSRNKKMTEGQLVHFFRHISEFIGF--TVTSHR 250 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 RH+ AT +L GD+ +++ +LGH L+ T Y + Sbjct: 251 FRHTTATEVLKQSGDIYAVKQLLGHKDLTVTLTYIH 286 >gi|301328247|ref|ZP_07221367.1| site-specific recombinase, phage integrase family [Escherichia coli MS 78-1] gi|300845276|gb|EFK73036.1| site-specific recombinase, phage integrase family [Escherichia coli MS 78-1] Length = 336 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 22/151 (14%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAIL 211 +D + + L G R +E +L P I + + T ++ K K R VP+ + K + Sbjct: 187 LDGDDLLVALLCLSTGGRWTEVATLKPAQITNCRVTF-LKTKNGKKRTVPISEELEKKVK 245 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFA 270 E F ++ ++++ LRR +P + H LRH+FA Sbjct: 246 EEASAKLFKVD--------------------YEKFCGILRRVKPDIPPNQATHILRHTFA 285 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +H + NGG++ ++Q ILGH + T Y ++ Sbjct: 286 SHFMMNGGNIIALQQILGHASIQQTMAYAHL 316 >gi|228942688|ref|ZP_04105218.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228976695|ref|ZP_04137123.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982383|ref|ZP_04142647.1| Transposase A from transposon Tn554 [Bacillus thuringiensis Bt407] gi|228777336|gb|EEM25639.1| Transposase A from transposon Tn554 [Bacillus thuringiensis Bt407] gi|228783024|gb|EEM31175.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816981|gb|EEM63076.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326943312|gb|AEA19207.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar chinensis CT-43] gi|326943809|gb|AEA19699.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar chinensis CT-43] Length = 372 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 60/236 (25%), Positives = 104/236 (44%), Gaps = 34/236 (14%) Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK 150 S K FL + K K+ ++ IL LK S + L+ + L+D Sbjct: 140 SRGNFKGFLHHTFKNKMK-DTKILK---LKVSKETLKVLSPDEVQILIDAC--------- 186 Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-----KIRIV--PLL 203 + R+ +L LLY G+RI EALSL +I+ + IQ +G+ +I+ V P Sbjct: 187 -CNTRDKFLLVLLYETGMRIGEALSLHLSDIVPTIRKIHIQDRGELINGAEIKTVCSPRT 245 Query: 204 PSVRKAILEYYDLCPFDLNLN------IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 + K + + Y +++ + + + L +G PL+ Q ++L+ Sbjct: 246 LDISKELADLYRRYILEIHTDEIDSDFVFIKLTGDRKGTPLDYASVQSLFKRLK--TKTK 303 Query: 258 LSTTAHTLRHSFATHLLSNGGDLR--SIQSILGHFRLSTT-QIYTNVNSKN-GGDW 309 + T H LRH+ T L G++R ++Q GH + TT Q+Y + ++ DW Sbjct: 304 MEVTPHMLRHTNITELWKT-GEMRPETLQKRAGHAHIQTTMQMYVHPTMEDIQEDW 358 >gi|228471472|ref|ZP_04056256.1| integrase [Porphyromonas uenonis 60-3] gi|228306725|gb|EEK15871.1| integrase [Porphyromonas uenonis 60-3] Length = 254 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 1/63 (1%) Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 NP V Q+ +++++R G+ T H RH+FAT L+ G L ++ S+LGH LSTT+IY Sbjct: 170 NPYVNQQ-LKEIQRLSGVKRVLTYHLARHTFATLALTKGVSLDTVGSVLGHSCLSTTRIY 228 Query: 299 TNV 301 V Sbjct: 229 ARV 231 >gi|172064743|ref|YP_001812393.1| integrase family protein [Burkholderia ambifaria MC40-6] gi|171998228|gb|ACB69144.1| integrase family protein [Burkholderia ambifaria MC40-6] Length = 236 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 50/202 (24%), Positives = 82/202 (40%), Gaps = 39/202 (19%) Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-------GKG 194 LL + ET R++ IL L CG+RI+E L +++ T R + KG Sbjct: 24 LLAVTEETSRFPERDTLILLLGVTCGMRITEIARLEVHHVLSRSGTRREEIALPGSITKG 83 Query: 195 DKIRIVPLL-PSVRKAILEYYDL------------------------------CPFDLNL 223 + R V L P +A+ Y + PF+L++ Sbjct: 84 CRPRCVFLSHPRALEAVDRYVEWRYRRGAGVLLDRREYRGLMPHTRLILTQKGGPFELSV 143 Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283 ++ F G + L Q Y+ L R GL ++H+ R +FA+ L++ G L ++ Sbjct: 144 KRRMN-FAGEPVEYLAADSLQSYVTSLYRAAGLRAGYSSHSGRRTFASRLVAQGHSLETV 202 Query: 284 QSILGHFRLSTTQIYTNVNSKN 305 Q +LGH L Y V ++ Sbjct: 203 QILLGHSHLDHVAPYLEVPRRD 224 >gi|187928829|ref|YP_001899316.1| integrase family protein [Ralstonia pickettii 12J] gi|187725719|gb|ACD26884.1| integrase family protein [Ralstonia pickettii 12J] Length = 442 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 71/302 (23%), Positives = 117/302 (38%), Gaps = 40/302 (13%) Query: 27 IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 IERG LS LT + D + FL T + I R S + R F + + Sbjct: 132 IERGRALSSLTTE----DAIAYRGFLRRPTPRERWIGPPRARSAPDWRPF-----ARGLS 182 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP----RALNEKQAL---TL 137 RS +L+ + + ++L +++ + ++ ++ P R E + L T+ Sbjct: 183 ARSTAYALTVLGAMFRWLIEQRYVLANPFAGIKVRGRTRVAPLDTTRGFTEGEWLLVRTI 242 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGKG 194 D + + R IL Y GLR SE + T +I D+ L + GKG Sbjct: 243 ADGLEWSYGWDVP-AAQRLRFILDFAYATGLRASELVGATLGDIRTDERNDRWLHLVGKG 301 Query: 195 DKIRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 + V L P R A+ ++ L + + PL + + R +R Sbjct: 302 GRPGKVALPPLARTALDQHLVQRGLPVTPARWDPRTPLIASLEQDSVTNITGTRLWMVMR 361 Query: 252 RYLGLPLSTTA---------------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 R+ G A H RH+ ATH L+ G +L +++ L H ++TT Sbjct: 362 RFFGQAADIIAGDHPTLAEKLRRASPHWTRHTHATHALARGAELTTVRDNLRHASVATTS 421 Query: 297 IY 298 IY Sbjct: 422 IY 423 >gi|325103601|ref|YP_004273255.1| integrase family protein [Pedobacter saltans DSM 12145] gi|324972449|gb|ADY51433.1| integrase family protein [Pedobacter saltans DSM 12145] Length = 389 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 73/153 (47%), Gaps = 15/153 (9%) Query: 163 LYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220 L+ C GLRIS+ +L +NI + T+ KG+ +V +P L Y + D Sbjct: 247 LFSCETGLRISDNNALDYENIENKVLTINTV-KGESFGVVVTVP------LTKYAISLID 299 Query: 221 LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280 + + P+FR I + +N R ++ + + + T H+ R + AT+ + GG+ Sbjct: 300 IKKR-RGPVFRNISDQVVN-----RNLKVIASKAEIYRNLTFHSSRDTMATNFIDAGGNA 353 Query: 281 RSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 +++ +LGH + TT IY ++ +M + Sbjct: 354 ETLKELLGHSDIKTTMIYVKISEARKKKLIMNL 386 >gi|270293959|ref|ZP_06200161.1| tyrosine type site-specific recombinase [Bacteroides sp. D20] gi|270275426|gb|EFA21286.1| tyrosine type site-specific recombinase [Bacteroides sp. D20] Length = 379 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 53/207 (25%), Positives = 92/207 (44%), Gaps = 21/207 (10%) Query: 99 LKYLKKRKITTESNILN-MRNLKKSNSLPRALNEKQALTLVD-NVLLHTSHETKWIDARN 156 L+Y R ++ + +N M +K + R E+ LT+ + L+HT + Sbjct: 170 LRYCLNRAVSEDYITVNPMNKIKNEDKPKRNRTERDYLTIKELTRLVHTPFYNILL---R 226 Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLR----IQGKGDKIRIVPLLPSVRKAILE 212 A L+ + CGLR + ++L ++I D++ IQ K + +PL K + Sbjct: 227 KAFLFSCF-CGLRHCDIIALRWEDIRYDENGNALLSIIQKKTKEAISLPLCSEAIKHL-- 283 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 P N +F G+ + + +++ Q G+ T HT RH+ AT Sbjct: 284 -----PDRGNAPETEKVFAGLVSLGRSNVILHKWVEQA----GISKHVTFHTARHTHATM 334 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYT 299 +L+ G DL ++ +LGH + TTQIY Sbjct: 335 MLTLGVDLYTVSKLLGHTNIQTTQIYA 361 >gi|257469860|ref|ZP_05633952.1| integrase/recombinase [Fusobacterium ulcerans ATCC 49185] gi|317064089|ref|ZP_07928574.1| DNA integration/recombination/inversion protein [Fusobacterium ulcerans ATCC 49185] gi|313689765|gb|EFS26600.1| DNA integration/recombination/inversion protein [Fusobacterium ulcerans ATCC 49185] Length = 333 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 82/188 (43%), Gaps = 27/188 (14%) Query: 138 VDNVLLHTSHETKWI----------DARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 +DNVL + + K I D RN ILY L+ G+R E ++L ++I++ + Sbjct: 128 IDNVLKLSFEDIKKIIGQYQINGEKDYRNVNILYTLFYTGMRSQELINLKFKHILEREGN 187 Query: 188 LRIQ------GKGDKIRIVPLLPSVRKAILEY----YDLCPFDLNLNIQLPLFRGIRGKP 237 I+ G+ + +L K EY Y++ D+ + +F K Sbjct: 188 YYIKLEETKSGREQYKSVHDILIKKLKEYKEYLQSLYNIDDSDIEDHY---VFSSSTEK- 243 Query: 238 LNPGVFQRYIRQLRRYLG--LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 N + R + L + +G + + H +RH+ AT L NG D+ I+ LGH T Sbjct: 244 -NTQLSYRALYDLVQNMGKLIGKDISPHNVRHAVATELSINGADILEIRDFLGHADTRVT 302 Query: 296 QIYTNVNS 303 ++Y N S Sbjct: 303 EVYINAKS 310 >gi|167766929|ref|ZP_02438982.1| hypothetical protein CLOSS21_01446 [Clostridium sp. SS2/1] gi|317499598|ref|ZP_07957861.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA] gi|167710904|gb|EDS21483.1| hypothetical protein CLOSS21_01446 [Clostridium sp. SS2/1] gi|316893147|gb|EFV15366.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA] Length = 363 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 63/289 (21%), Positives = 126/289 (43%), Gaps = 35/289 (12%) Query: 38 SYECDTRQFLIFL-------------AFYTEEKITIQTIRQLSYTE-IRAFISKRRTQKI 83 +Y D R F FL F + I+++ Y E ++ +IS+ + + + Sbjct: 47 AYAYDLRVFFHFLIDENPAYRNYSVLDFKVSDLDKIESVDLEEYMEYLKVYISEEQHKHM 106 Query: 84 --GDRSLKRSLSGIKSFLKYLKKRKITTESNIL--NMRNLKKSNSLPRALNEKQALTLVD 139 ++ + R +S ++SF Y KR++ ++ L +M +++ + L + +L+D Sbjct: 107 QNTEQGVFRKMSALRSFYGYFYKRQLIEKNPTLLVDMPKIREKEII--RLEADEVASLLD 164 Query: 140 NVLLHTSHETKWIDA-------RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 V H T A R+ AI+ LL G G+R+SE + L ++ + L + Sbjct: 165 FVEHGGDHLTGQKRAYYEKTKERDLAIITLLLGTGIRVSELVGLNIDDVDFRNNGLHLIR 224 Query: 193 KGDKIRIVPLLPSVRKAILEYYD-----LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYI 247 KG K V V A+ +Y + + P + + + LF ++ + + Q + Sbjct: 225 KGRKEMTVYFGNEVADALEQYIEGSRKLIIPKEGHED---ALFYSMQRRRIGVQAVQNLV 281 Query: 248 RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 ++ + + T H LR ++ T L D+ + +LGH ++TT+ Sbjct: 282 KKYAKEVTPLKKITPHKLRSTYGTALYQETDDIYLVAEVLGHSDVNTTR 330 >gi|45358306|ref|NP_987863.1| integrase/recombinase [Methanococcus maripaludis S2] gi|44921064|emb|CAF30299.1| Probable integrase/recombinase [Methanococcus maripaludis S2] Length = 324 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 72/302 (23%), Positives = 131/302 (43%), Gaps = 18/302 (5%) Query: 17 ERQN-WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFI 75 E QN +++ + ER + + + D +FLAF E ++ + + Sbjct: 21 EEQNIYIKKFQEEREFDNIKPSTIKNDVTSLKVFLAFCEEIGKEPYSLTTHDFVIFFNML 80 Query: 76 SKRRTQKIGDRSLKRSLSGIKSF---LKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 + RR + R+ R + +K F LKY+ ++ ES I R K +N Sbjct: 81 NNRRNCTV--RTQNRYFNLLKVFYRLLKYVNFKEFERES-IERKRFSKFEKKHYDTINFD 137 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG 192 ++ ++L S R++ I+ +L+ G R SEALS+ ++ ++ RI+ Sbjct: 138 TYNRIIKEIILSNSR----TRLRDALIVRVLWETGCRRSEALSIRYKDCDFEKGRFRIRD 193 Query: 193 -KGDKIRIVPLLPSVRKAILEYY-DLCPFDLNLNI-QLPLFRGIRGKPLN--PGVFQRYI 247 K + R V + + + +Y + D N I Q + + + L+ VF++ + Sbjct: 194 TKTYEERTVVIAEETVEIVRDYIKENIKRDSNDYIFQNEMIQNGKRVKLDWITNVFKKAV 253 Query: 248 RQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 R+L+ +P H+LRH AT LL G + ++ ILGH L TT Y++ + Sbjct: 254 RKLKEEGVIPEGKRIVIHSLRHGRATDLLDKGVPIDVVKEILGHRSLETTLYYSHSKERK 313 Query: 306 GG 307 G Sbjct: 314 NG 315 >gi|320012999|gb|ADW07848.1| integrase family protein [Streptomyces flavogriseus ATCC 33331] gi|320013124|gb|ADW07972.1| integrase family protein [Streptomyces flavogriseus ATCC 33331] Length = 357 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 15/185 (8%) Query: 148 ETKWID---------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 E +W+D RN +L L Y LR E SL ++ TLR++ + K R Sbjct: 154 EQQWLDILAVAAAEPVRNRVMLALAYDAALRREELCSLRTDDLDPAHRTLRVRAETTKNR 213 Query: 199 IVPLLP-SVRKAILEYYDLCPFDLNLNIQLPLF----RGIRGKPLNPGVFQRYIRQLRRY 253 + ++P S +L L + PLF R +PL+ + + +R++ Sbjct: 214 LERVVPYSAPTGVLLSGYLAHRATVSRARGPLFLSESRRNHAQPLSLWTWSKVVRRIALA 273 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 +P +T HT RH T L G +L +I + GH +T Y +++ ++ D + Sbjct: 274 ADVPRFST-HTTRHLCLTDLARMGWELHAIATFAGHRHTDSTLTYIHLSGRDLADKLSRG 332 Query: 314 YDQTH 318 +Q H Sbjct: 333 MEQIH 337 >gi|301048720|ref|ZP_07195729.1| site-specific recombinase, phage integrase family [Escherichia coli MS 185-1] gi|300299466|gb|EFJ55851.1| site-specific recombinase, phage integrase family [Escherichia coli MS 185-1] Length = 336 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 73/309 (23%), Positives = 128/309 (41%), Gaps = 51/309 (16%) Query: 8 EIVSFE----LLKERQNWLQNLEIERGLSKL-------TLQSYECDTRQFLIFLAFYTEE 56 E V+FE ++ W R LS+L Q++E T++F L T Sbjct: 44 EAVAFERYTIAYASQKEWAGQRADRRTLSELLDIWWKYHGQNHEHGTKEFNHLLK--TIS 101 Query: 57 KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS---LSGIKSFLKYLKKRKITTESNI 113 I + ++S + + S R I ++ R LSG+ F K ++ + + + I Sbjct: 102 GIGDIPVSRMSKRALMDYRSMRLRDGISAATINRDMYRLSGM--FTKLIQLDEFSGQHPI 159 Query: 114 LNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA 173 + L ++N L EK + + NVL D + + L G R +E Sbjct: 160 HGLPPLAEANPEMTFL-EKAEIEKLLNVL----------DGDDLLVALLCLSTGGRWTEV 208 Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233 +L P I + + T ++ K K R VP+ + K + E F ++ Sbjct: 209 ATLKPAQITNCRVTF-LKTKNGKKRTVPISEELEKKVKEEASAKLFKVD----------- 256 Query: 234 RGKPLNPGVFQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 ++++ LRR +P + H LRH+FA+H + NGG++ ++Q ILGH + Sbjct: 257 ---------YEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASI 307 Query: 293 STTQIYTNV 301 T Y ++ Sbjct: 308 QQTMAYAHL 316 >gi|298383457|ref|ZP_06993018.1| integrase [Bacteroides sp. 1_1_14] gi|298263061|gb|EFI05924.1| integrase [Bacteroides sp. 1_1_14] Length = 396 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 70/164 (42%), Gaps = 48/164 (29%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 A L+ Y GLR S+ ++LT NI++ Q T I SV+ I Sbjct: 238 AFLFCCYA-GLRYSDFINLTAANIVELHQETWLI------------YKSVKTGI------ 278 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-------------- 262 +++LPL+ GK L V + Y L + L ++ Sbjct: 279 -------DVRLPLYLLFEGKGLR--VLENYKDDLNGFFKLKDNSNVNKDLNALAKLAEID 329 Query: 263 -----HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 HT RH+ AT L+ +G ++ ++Q +LGH + TTQ+Y N+ Sbjct: 330 KRISFHTARHTNATLLIYSGANITTVQKLLGHKSVKTTQVYANI 373 >gi|83589229|ref|YP_429238.1| Phage integrase [Moorella thermoacetica ATCC 39073] gi|83572143|gb|ABC18695.1| Phage integrase [Moorella thermoacetica ATCC 39073] Length = 318 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 66/285 (23%), Positives = 117/285 (41%), Gaps = 36/285 (12%) Query: 39 YECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSF 98 Y ++FL F A + +Q +R +S + A+I RR + ++++K L+ ++ F Sbjct: 54 YRDSMKKFLSFCA----TRFRLQNLRNISDKHLEAYIDYRRGNETSEKTIKGDLAAVRFF 109 Query: 99 LKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSA 158 +Y++ + N + L + + D + +D A Sbjct: 110 HRYIENARFQLSGN--------EKFGLASTPDGRADRAWSDGEYERMIALAERLDRPEVA 161 Query: 159 I-LYLLYGCGLRISEALSLTPQNIMDDQST--LRIQGKGDKIRIVPLLPSVRKAILEYYD 215 + + L GLR+ E L+ ++ + L ++GKG K R +PL A+ E Sbjct: 162 LAMRLARYAGLRVHEITRLSRKDAEQALAAGMLHVKGKGGKERDIPLATEAAVALKE--- 218 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR---YLGLPLSTTAHTLRHSFA-T 271 C + N +L + G + L Q +IR+ R LG ++ T H LRH++A Sbjct: 219 ACEMAASENDKLLVPPGEK-THLVIKRIQNFIRRHRDKVMELGKEVNITFHGLRHAYARE 277 Query: 272 HLLSNGGDLRSIQSI-------LGHFRLSTTQIYTNVNSKNGGDW 309 G+L+ I+ LGH R T+IY G +W Sbjct: 278 QFRVKVGELKKIRRALAEVSEKLGHNRPEVTKIYL------GSEW 316 >gi|312875712|ref|ZP_07735708.1| site-specific tyrosine recombinase XerS [Lactobacillus iners LEAF 2053A-b] gi|311088763|gb|EFQ47211.1| site-specific tyrosine recombinase XerS [Lactobacillus iners LEAF 2053A-b] Length = 363 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 73/166 (43%), Gaps = 18/166 (10%) Query: 144 HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMD----DQSTLRIQ--GKGDKI 197 H K+ R+ AI+ LL GLRISE ++L NI D D+S L I+ GK D Sbjct: 189 HAIRYFKFNKERDIAIIALLLASGLRISELVNL---NIHDLNIIDRSVLVIRKGGKKDAA 245 Query: 198 RIVP-LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR----GKPLNPGVFQRYIRQLRR 252 I +P ++K Y + N QL R K ++ QR++ + Sbjct: 246 LIADWAIPYLKK----YLHVRNTRYQPNKQLKAIFITRYRETAKRIDTSTIQRFVEKYSV 301 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 TT H LRHS T + + D+ ++ + LGH LS T Y Sbjct: 302 AFPDGSRTTPHKLRHSLGTEIYNKSMDVVAVATQLGHTGLSATDQY 347 >gi|298373373|ref|ZP_06983362.1| integrase [Bacteroidetes oral taxon 274 str. F0058] gi|298274425|gb|EFI15977.1| integrase [Bacteroidetes oral taxon 274 str. F0058] Length = 431 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 27/161 (16%) Query: 158 AILYLLYGC--GLRISEALSLTPQNI---MDDQSTLRIQGKGDKIR-IVPLLPSVRKAIL 211 A L ++ C G+ I++ +L ++I D Q +R + + K+ +VPL P + +AI+ Sbjct: 238 ARLMFVFSCFTGMAIADMENLEYRHIQTAADGQRYIRKERQKTKVEFVVPLHP-IAEAII 296 Query: 212 EYY--DLCPFDL---------NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 YY +L + +L Q R + GK L+ IRQ Y Sbjct: 297 NYYRKELAGNEEQQAVKEKGDSLVFQPHCSRSVMGKNLSIVGKACGIRQRLSY------- 349 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 H RH+F T LS G + SI ++GH +S+TQIY V Sbjct: 350 --HVARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQV 388 >gi|256840356|ref|ZP_05545864.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256737628|gb|EEU50954.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 386 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 36/57 (63%) Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +Y+R+L+ G+ T H RH+ A+ +S G D+ +++ +LGH +++T++Y V Sbjct: 313 KYVRRLKEKAGIEKDLTYHCSRHTTASLAISAGADISAVKDVLGHGSITSTEVYAKV 369 >gi|197363656|ref|YP_002143293.1| bacteriophage integrase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197095133|emb|CAR60680.1| probable bacteriophage integrase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 337 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 64/143 (44%), Gaps = 23/143 (16%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQST-LRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 I + G R SEA +N+ Q T RI K K R V +P + E Y+ Sbjct: 198 IAKICLATGARWSEA-----ENLEGSQVTPYRITYKNTKSRKVRSIPISK----ELYN-- 246 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 ++P RG P F+R + + + LP H LRH+FA+H + NG Sbjct: 247 --------EMPKKRGQLFTPCRK-TFERTV--AKAGIELPEGQCTHVLRHTFASHFMMNG 295 Query: 278 GDLRSIQSILGHFRLSTTQIYTN 300 G++ ++ ILGH + T IY + Sbjct: 296 GNILVLKEILGHSDIKMTMIYAH 318 >gi|90962164|ref|YP_536080.1| Phage integrase [Lactobacillus salivarius UCC118] gi|90821358|gb|ABD99997.1| Phage integrase [Lactobacillus salivarius UCC118] Length = 381 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 25/172 (14%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ------GKGDKIRIVPLLPSV 206 D + + LL GLR+ E L+LT ++ +T+ I G KI+ S+ Sbjct: 194 DLKKYTLFRLLAYSGLRVGECLALTWHDLDYKNNTIAINKTYAKTNNGIKIQTPKTKASI 253 Query: 207 RKAILEYYD---LCPFDLN------------LNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 RK L+ L + LN +N Q +F + + + I Q+ Sbjct: 254 RKVSLDVETIQVLKEWQLNQRKQLLKVGINAMNKQQLIFSNNKNSFIANETVRLAIHQIA 313 Query: 252 RYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301 + G+ P++T H RH+ AT L ++G D++ +Q+ LGH + TT IYT+ Sbjct: 314 KKTGIHPITT--HGFRHTHATLLFASGMDIKQVQARLGHSNVQTTLNIYTHA 363 >gi|15921682|ref|NP_377351.1| integrase/recombinase [Sulfolobus tokodaii str. 7] gi|15622469|dbj|BAB66460.1| 284aa long hypothetical integrase/recombinase [Sulfolobus tokodaii str. 7] Length = 284 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 61/243 (25%), Positives = 109/243 (44%), Gaps = 40/243 (16%) Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 I KRR + + R I + L++LK + + I +R + RAL+E++ Sbjct: 78 IEKRRKKSVTARHY------IIAVLRFLKWLGVDVKPTIPRIRRKE-----IRALSEEEI 126 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-K 193 + + +NV ++ ++ LL GLR E LS+ +I ++ + ++ K Sbjct: 127 VKIKENVK----------KLKDRLLIQLLLDTGLRSKELLSIKKSDINIERRYIIVRNTK 176 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 + RIV + + Y N+ LF + R +++L + Sbjct: 177 NGEERIVFFTEETARLLKSYLR------NIEDNGILFN------MTYHALYRKLKRLGKK 224 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 LG+ L H LRH+FAT + G L +Q +LGH + TTQIYT++ +++ + EI Sbjct: 225 LGIDLR--PHILRHTFATQAIRKGMPLPVVQKLLGHKDIRTTQIYTHLVTED----LQEI 278 Query: 314 YDQ 316 Y + Sbjct: 279 YKK 281 >gi|313634565|gb|EFS01051.1| toxin-antitoxin system, toxin component, PIN family [Listeria seeligeri FSL N1-067] Length = 381 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 49/190 (25%), Positives = 81/190 (42%), Gaps = 19/190 (10%) Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 E++ +T D L + +T D YLL GLR SEAL+LT Q++ + L I Sbjct: 174 EEKDITFYDKYELRSFLDTVKDDTFKYTFFYLLAFTGLRKSEALALTWQDVDLNNKRLYI 233 Query: 191 Q---GKGDKIRIVPLLPSVRKAILEY-YDLCPFDL----------NLNI----QLPLFRG 232 +G+ RI+ + + D D+ N +I ++ + Sbjct: 234 NKTLSRGEHARILVNTTKTKAGKRDISIDASTVDVLKKWKSYQRGNHHILRLDKVQIIFD 293 Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 +G NP ++ + ++ T+H RH+ A+ L G L+ +Q LGH + Sbjct: 294 NKGNYYNPSSTYSWLDNIFKHHTELKKITSHGFRHTHASLLFEAGASLKDVQERLGHADI 353 Query: 293 STTQ-IYTNV 301 TT IYT+V Sbjct: 354 QTTSNIYTHV 363 >gi|307710443|ref|ZP_07646881.1| integrase [Streptococcus mitis SK564] gi|307618796|gb|EFN97934.1| integrase [Streptococcus mitis SK564] Length = 405 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 21/177 (11%) Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207 E + I ++ + YL + G R SE+ +L ++I D+S +++ D+ V S + Sbjct: 213 EDEKISLKDYVLFYLTFFLGDRKSESYALQWKHIDFDKSQIQLLQALDRYGEVKSTKSNK 272 Query: 208 KAIL----------------EYYDLCPFDLNLNIQLPLF-----RGIRGKPLNPGVFQRY 246 K + + Y+L F + N + +F +G KPL+ Sbjct: 273 KTVFSVSGDLLQLLKNWKEQQRYELAKFGIISNPEQFVFTYIDTKGNINKPLHADYLNNK 332 Query: 247 IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 ++ +R+ T H LRH+ AT G L +I L H TTQIY N ++ Sbjct: 333 MKSIRKRHKELAHATPHKLRHTGATLAKQAGMSLEAISEALTHSDTGTTQIYVNTSN 389 >gi|317052809|ref|YP_004119575.1| integrase family protein [Pantoea sp. At-9b] gi|316953549|gb|ADU73019.1| integrase family protein [Pantoea sp. At-9b] Length = 288 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 30/44 (68%) Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+++QS+LGH +T++YT V Sbjct: 216 VPVTLHTFRHSYAMHMLYAGTPLKALQSLLGHKSAKSTEVYTRV 259 >gi|218263889|ref|ZP_03477845.1| hypothetical protein PRABACTJOHN_03535 [Parabacteroides johnsonii DSM 18315] gi|218222439|gb|EEC95089.1| hypothetical protein PRABACTJOHN_03535 [Parabacteroides johnsonii DSM 18315] Length = 327 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 63/253 (24%), Positives = 107/253 (42%), Gaps = 29/253 (11%) Query: 61 QTIRQLSYTEIRAFISKRR----TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116 + IR ++ ++R +++ + K+ +++R LS SF +L+ +S + + Sbjct: 86 KNIRHITTDDLRNYLNDYQQTSGATKVTVDNIRRILS---SFFSWLEDEDYIVKSPVRRI 142 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 +K ++ T D L + I R+ A++ LL G+R+ E + L Sbjct: 143 HKVKVGKTVKE--------TYSDEALEQMRDHCEGI--RDLALIDLLASTGMRVGELVKL 192 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 +I + + GKGDK R V + K L+ Y D N + + L Sbjct: 193 NRNDIDFENRECIVTGKGDKQRRV-YFDARAKIHLQRYLAERIDDNPALFVSLL-----A 246 Query: 237 PLN----PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 P + GV R +R+L R L +P H R + AT + G + +Q +LGH L Sbjct: 247 PYDRLQISGVEIR-LRRLGRELNIP-KVHPHKFRRTLATMAIDKGMPIEQVQHLLGHQSL 304 Query: 293 STTQIYTNVNSKN 305 TT Y VN N Sbjct: 305 DTTLQYAMVNQTN 317 >gi|218128957|ref|ZP_03457761.1| hypothetical protein BACEGG_00530 [Bacteroides eggerthii DSM 20697] gi|317477483|ref|ZP_07936709.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|217988920|gb|EEC55237.1| hypothetical protein BACEGG_00530 [Bacteroides eggerthii DSM 20697] gi|316906347|gb|EFV28075.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 424 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 58/254 (22%), Positives = 113/254 (44%), Gaps = 15/254 (5%) Query: 49 FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT 108 L F + KI + + Y I ++ R + + + ++ LS ++ +K+ + Sbjct: 149 LLRFCSPRKIKFKDV---DYVFITDYMHYLRARGVAENTVHMYLSNFRAICNKARKQGVK 205 Query: 109 T-ESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167 + N ++++ ++ RAL+ K+ + L+ +V L + AR+ ++ Y G Sbjct: 206 VGKDNPFADLDIRRRETVKRALS-KEEIALIASVNLR--RHPRLEQARD-LFMFSFYCRG 261 Query: 168 LRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF---DLNLN 224 + + + L ++ D G +++ V LLP ++K I +Y P+ ++ Sbjct: 262 MSFVDVIHLRNDWVVKDTIFYARSKTGQRLQ-VGLLPDLQKIIEKYRTDSPYIFPYIDSG 320 Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284 ++ R G+ RY++QL R L + L T + RHS+AT + G + I Sbjct: 321 SSRSVYTQYR---YALGMINRYLKQLGRLLHIDLPLTTYVARHSWATIAKNEGIPISLIS 377 Query: 285 SILGHFRLSTTQIY 298 LGH TTQIY Sbjct: 378 EGLGHTSEKTTQIY 391 >gi|209901196|ref|YP_002286977.1| site-specific recombinase, phage integrase family [Klebsiella pneumoniae] gi|209574147|gb|ACI63035.1| site-specific recombinase, phage integrase family [Klebsiella pneumoniae] Length = 547 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 72/324 (22%), Positives = 131/324 (40%), Gaps = 44/324 (13%) Query: 27 IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 +ERG LS LT D + F+ T + + R E R F + + Sbjct: 230 VERGRALSSLTTD----DAIAYRAFVRHPTPRERWVGPPRPRDSVEWRPF-----SGGLS 280 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 RS +L+ + + ++L +++ + ++ + ++L AL+ + T + +LL Sbjct: 281 ARSAAYALTVLSALFRWLIEQRYVLANPFAGVK--VRGHALRPALDTARGFTEGEWLLLR 338 Query: 145 TSHET-----KWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDDQST---LRIQGK 193 + W + + ++L Y GLR SE + N+ D+ L + GK Sbjct: 339 AIADGLEWSYGWSEPAAQRLRFMLDFGYATGLRASELVGAVLGNVRLDEHGDHWLHLVGK 398 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLN---LNIQLPLFRGIRGKPLNPG--------V 242 G K V L P A+ +Y ++ N + PL G G+ N G V Sbjct: 399 GGKPGKVALPPLAYTALDQYLAQRQLPVSRERWNPKTPLV-GSLGEDGNAGITGPHLWCV 457 Query: 243 FQRYIRQLRRYLGL--PLST------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 +R+ Q + P++ T H +RHS A+H L+ G L +++ L H ++T Sbjct: 458 LRRFFTQAAEAIEADHPVAAEKLRRATPHWMRHSHASHALARGAQLTAVRDNLRHASIAT 517 Query: 295 TQIYTNVNSKNGGDWMMEIYDQTH 318 T +Y + + M + + H Sbjct: 518 TSMYLHGDELERARQMRQAFGARH 541 >gi|187940078|gb|ACD39211.1| phage integrase [Pseudomonas aeruginosa] Length = 379 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 79/175 (45%), Gaps = 37/175 (21%) Query: 167 GLRISEALSLT------PQNIMDDQSTLRI-------QGKGDKIRIVPLLPSVRKAILEY 213 GLR E L+ P I S R+ + KG+K R + + S+ A+ +Y Sbjct: 200 GLRKEELLTFPSSYIFDPAQISKGSSHFRVFCSPKDMELKGNKAREIDIPRSLMAALWQY 259 Query: 214 YDLCPFDLNLNIQ------LPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 + N ++Q +PLF G P +P + + + + LGLP + T H LRH Sbjct: 260 KI---HERNRSMQTSCVESIPLFLSRYGVPYSPK--GQSLNHMWKDLGLPFTVTPHMLRH 314 Query: 268 SFATHLLSNGGDLRSIQSI----------LGHFRLSTTQIYTNVNSKNGGDWMME 312 ++ATH L D+R +S+ LGH ++TTQ Y ++ S D M E Sbjct: 315 TYATHTLH---DMRRRKSVIDPLLYVRDRLGHSSVATTQRYLHLISMIEDDVMGE 366 >gi|219848551|ref|YP_002462984.1| integrase domain-containing protein SAM domain-containing protein [Chloroflexus aggregans DSM 9485] gi|219542810|gb|ACL24548.1| integrase domain protein SAM domain protein [Chloroflexus aggregans DSM 9485] Length = 317 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 72/327 (22%), Positives = 133/327 (40%), Gaps = 62/327 (18%) Query: 2 EGNNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQ 61 + N + + +L E +N+L L E LS+ T+ SY CD R + L Q Sbjct: 3 DANGFGQQPARTILGELENFLAELRQEDRLSENTITSYRCDLRTAGLALC---------Q 53 Query: 62 TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121 + ++ +I+ F++ R+ Q + R ++ + F ++ K+R T + + + Sbjct: 54 ELSTITAHDIQQFLAGRKEQPG---TTNRRIASLNRFFRWAKERGYVTHNPVEQIGGRLP 110 Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 + P+ + + L +D + + I LL G+R E L+L ++ Sbjct: 111 TEHRPQPIANEHELRALDQAIAAAPQPYRL-------IFTLLREIGIRTDEVLNLNLGDV 163 Query: 182 MDDQST----LRIQGKGDKIRIVPLLP--------SVRKAILEYYDLCPFDLNLNIQLPL 229 + + +R G K R++ L P +R + E L P PL Sbjct: 164 ILEPGREMLLVRDSKSGSK-RMIALTPDAMPRSLRGLRHWVREMDHLPP-------DTPL 215 Query: 230 FRGIRG-KPLNPGVFQRYI--------------RQLRRYLGLPLSTTAHTLRHSFATHLL 274 FR RG + + +R++ R+ RY T H LRH+ AT L+ Sbjct: 216 FRSSRGTRASYDTLHRRWVAVCRAARLIDVVDGREQPRY-------TLHHLRHTAATKLV 268 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNV 301 + + + ++ ILGH +T+ YT + Sbjct: 269 AFYPE-QVVRRILGHRDPRSTRRYTEL 294 >gi|27383304|ref|NP_774833.1| site-specific integrase/recombinase [Bradyrhizobium japonicum USDA 110] gi|27356478|dbj|BAC53458.1| blr8193 [Bradyrhizobium japonicum USDA 110] Length = 366 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 14/158 (8%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI--QGKGDKIRIVPLLPSVRKAILE 212 R+ A L L G R+SEA + ++ ++ ++ GKG + R+VP+ + +++ Sbjct: 104 RDRAFLLFLARTGARVSEATGVNANDLQLERGRPQVLLHGKGRRDRVVPIPQDLVRSLTN 163 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLN----PGVFQRYIRQL---RRYL-GLPLSTTAHT 264 L L + P+F G+ + L + +R Q R L G P+S H Sbjct: 164 L--LSERGLAHHEPRPIFVGVHNERLTRFGATHIVRRAASQAGSTRPSLEGKPISP--HI 219 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 RHS A LL +G DL +IQ+ LGH +++TT Y + Sbjct: 220 FRHSLAMKLLRSGVDLLTIQAWLGHAQVATTHRYAAAD 257 >gi|54027743|ref|YP_121984.1| putative recombinase [Nocardia farcinica IFM 10152] gi|54019251|dbj|BAD60620.1| putative recombinase [Nocardia farcinica IFM 10152] Length = 353 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 79/169 (46%), Gaps = 24/169 (14%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQ-GKG-----DKIRIVPLLP 204 ARN + L GLR++EA L +I + L ++ GKG + R+VPL+ Sbjct: 161 ARNYMVARLAADVGLRVNEACMLDLDDIRWELGRFGKLNVRHGKGAFRSGPRQRLVPLIN 220 Query: 205 SVRKAILEYYD--LCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQ-LRRYLG----- 255 A+ + + FD + + + PLF R + + G R R +RR LG Sbjct: 221 GADTALTWFVEDVWAQFDADETLPRAPLFPSERRRAGSSGT--RVTRDVIRRALGGAVDR 278 Query: 256 -LPLST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 LP + T H LRH A+ L G D+ +IQ +LGH ++TT Y + Sbjct: 279 HLPTWSGRLTPHVLRHYCASQLYRTGVDILAIQELLGHSWITTTMRYVH 327 >gi|227904064|ref|ZP_04021869.1| site-specific tyrosine recombinase XerS [Lactobacillus acidophilus ATCC 4796] gi|227868083|gb|EEJ75504.1| site-specific tyrosine recombinase XerS [Lactobacillus acidophilus ATCC 4796] Length = 358 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 6/163 (3%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ AI+ L+ G G+R+SE + Q++ ++ L + KG + VP+ I +Y Sbjct: 189 RDMAIIALILGTGIRVSECAGVDLQDLNLKEAVLDVTRKGGQKDSVPIAEWTLSYIKQYK 248 Query: 215 DLCPFDLNLNIQLPLFRGIR----GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 D+ + + F R + + ++ + + G PL T H LRH+ A Sbjct: 249 DIRTDRYMADQKQTAFFLTRWHNQTRRITANAIEKMVNKYSASFGHPL--TPHKLRHTLA 306 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 + L D + LG + T +YT+V+ + D + +I Sbjct: 307 SELYEVTKDQVLVAQQLGQKGTTATDLYTHVDQRKQRDALNQI 349 >gi|255693813|ref|ZP_05417488.1| integrase [Bacteroides finegoldii DSM 17565] gi|260620383|gb|EEX43254.1| integrase [Bacteroides finegoldii DSM 17565] Length = 406 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 73/148 (49%), Gaps = 19/148 (12%) Query: 167 GLRISEALSLTPQNI---MDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222 GL ++ +L P++I + + +R+ + K D +PL P + + ILE Y+ D Sbjct: 251 GLAYADTRALHPRHIGKTSEGRKYIRVCRAKTDVEAFIPLHP-IAEQILELYNTTDDDR- 308 Query: 223 LNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281 P+F PL V + + LG+ + + H RHSF T +LS+G + Sbjct: 309 -----PVF------PLPVRDVLWYEVHGMGVALGMKENLSYHMARHSFGTLMLSSGIPIE 357 Query: 282 SIQSILGHFRLSTTQIYTNV-NSKNGGD 308 SI ++GH +++TQ+Y V + K GD Sbjct: 358 SIAKMMGHTNINSTQVYAQVTDRKISGD 385 >gi|319654996|ref|ZP_08009068.1| hypothetical protein HMPREF1013_05690 [Bacillus sp. 2_A_57_CT2] gi|317393313|gb|EFV74079.1| hypothetical protein HMPREF1013_05690 [Bacillus sp. 2_A_57_CT2] Length = 370 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 78/324 (24%), Positives = 136/324 (41%), Gaps = 65/324 (20%) Query: 32 SKLTLQSYECDTRQFLIFL------AFYTEEKITIQTIRQLSYTEIR---AFISKRR--- 79 S LTL +Y D ++F +L + + I++ T+ LS + FIS+++ Sbjct: 37 SPLTLFNYVRDFKEFFGWLIAEGIDTCDSIKDISVGTLEFLSLDDANNYFKFISRKKYKV 96 Query: 80 ------TQKIGDRSLKRSLSGIKSFLKYL------KKRKITTESNILNMRNLKKSNSLPR 127 T+KI +++ R S ++S KYL K E N++ +KK + Sbjct: 97 SKKDNETKKIDTKTVNRHKSSLRSLFKYLTVEAEVSAGKPYFERNVMEKIPIKK---VSE 153 Query: 128 ALNEKQALTLVDNVLLHTSHETKWID-------------------------ARNSAILYL 162 LNE+ A + D + + E K +D R+ AIL L Sbjct: 154 TLNER-AKKITDKIFI----EDKDVDFLEYVQNEYAASLSPAQMRYFKRDKERDFAILSL 208 Query: 163 LYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219 G G+R++E +L ++I + S +R GK D + I P +A LE Sbjct: 209 FLGSGIRVNELTNLRIKDIDFSAKEISVIRKGGKKDTVSITPSSLEDVEAYLEVRKEKYK 268 Query: 220 DLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS-N 276 + + + ++G +PL + + + + +S H LRH++AT+L Sbjct: 269 AGDGENEYIFVKNLKGTPQPLTNRAVEDIVYKYTKSFDKRMS--PHKLRHTYATNLAEQT 326 Query: 277 GGDLRSIQSILGHFRLSTTQIYTN 300 GGD+ I + LGH + + +Y N Sbjct: 327 GGDIPLIMNQLGHTQSDISLLYIN 350 >gi|288799833|ref|ZP_06405292.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon 299 str. F0039] gi|288333081|gb|EFC71560.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon 299 str. F0039] Length = 362 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 68/158 (43%), Gaps = 21/158 (13%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLLPSVRKAILEYYD--- 215 L+ C GLR S+ L + +D + +Q K + + L K + E + Sbjct: 216 FLFSCLTGLRFSDVSKLRWAEVSEDFKRITFVQKKTSGLEYLDLSEGATKILKERKNNGG 275 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275 L +DL P G GK LN R G+ + HT RH+FAT LL+ Sbjct: 276 LVFYDL------PRESGNAGKLLNS---------WRVRAGINKKISFHTARHTFATMLLT 320 Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 DL ++ +LGH + TTQIY + K D + +I Sbjct: 321 LDVDLYTVSKLLGHKDIKTTQIYAKIIDKKKQDAVNKI 358 >gi|29347986|ref|NP_811489.1| transposase [Bacteroides thetaiotaomicron VPI-5482] gi|29339888|gb|AAO77683.1| transposase [Bacteroides thetaiotaomicron VPI-5482] Length = 411 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 22/153 (14%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQS----------TLRIQGKGDKIRIVPLLPSVRKA 209 ++ C GL ++ +L ++++ D + L + K I +PLLP V A Sbjct: 250 FIFACFTGLAFADVSTLKKEDLVQDNNGDWWIRKGRIKLMHRHKASSICNIPLLP-VPLA 308 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 IL+ Y+ P + LP+ P N + Y++++ + G+ + T H RH+F Sbjct: 309 ILKKYENNPVCIKKGCCLPV-------PCNQKM-NSYLKEIADFCGIKKNITTHAGRHTF 360 Query: 270 ATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T + L+N L+ + +LGH TQ Y V Sbjct: 361 GTTITLANNVPLQDVSVMLGHASTRMTQHYARV 393 >gi|323943751|gb|EGB39849.1| phage integrase site-specific recombinase [Escherichia coli H120] Length = 103 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 1/60 (1%) Query: 243 FQRYIRQLRRYL-GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 ++++ LRR +P + H LRH+FA+H + NGG++ ++Q ILGH + T Y ++ Sbjct: 24 YEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 83 >gi|292659084|gb|ADE34467.1| RedF [Cloning vector pTARa] Length = 170 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 99 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 142 >gi|298482697|ref|ZP_07000881.1| tyrosine type site-specific recombinase [Bacteroides sp. D22] gi|298271160|gb|EFI12737.1| tyrosine type site-specific recombinase [Bacteroides sp. D22] Length = 416 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 10/106 (9%) Query: 196 KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLG 255 K + V +P +A Y LC +L +F G+ P +P R +++ G Sbjct: 303 KTKGVEYMPISEQA----YSLC--GEQQEGELLVFAGL---P-DPSWINRPVKRWVEAAG 352 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T H RHS+AT L+ G D+ ++ +LGH + TTQ+Y V Sbjct: 353 ISKHITFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVKTTQVYAKV 398 >gi|189462248|ref|ZP_03011033.1| hypothetical protein BACCOP_02934 [Bacteroides coprocola DSM 17136] gi|189431050|gb|EDV00035.1| hypothetical protein BACCOP_02934 [Bacteroides coprocola DSM 17136] Length = 406 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 73/148 (49%), Gaps = 19/148 (12%) Query: 167 GLRISEALSLTPQNI---MDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222 GL ++ +L P++I + + +R+ + K D +PL P + + ILE Y+ D Sbjct: 251 GLAYADTRALHPRHIGKTSEGRKYIRVCRAKTDVEAFIPLHP-IAEQILELYNTTDDDR- 308 Query: 223 LNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281 P+F PL V + + LG+ + + H RHSF T +LS+G + Sbjct: 309 -----PVF------PLPVRDVLWYEVHGMGVALGMKENLSYHMARHSFGTLMLSSGIPIE 357 Query: 282 SIQSILGHFRLSTTQIYTNV-NSKNGGD 308 SI ++GH +++TQ+Y V + K GD Sbjct: 358 SIAKMMGHTNINSTQVYAQVTDRKISGD 385 >gi|209901048|ref|YP_002286830.1| site-specific recombinase, phage integrase family [Klebsiella pneumoniae] gi|209901058|ref|YP_002286840.1| site-specific recombinase, phage integrase family [Klebsiella pneumoniae] gi|209901077|ref|YP_002286859.1| site-specific recombinase, phage integrase family [Klebsiella pneumoniae] gi|294496696|ref|YP_003560389.1| resolvase [Klebsiella pneumoniae] gi|167077384|gb|ABZ10915.1| resolvase [Klebsiella pneumoniae] gi|167077391|gb|ABZ10921.1| resolvase [Klebsiella pneumoniae] gi|167077398|gb|ABZ10927.1| resolvase [Pseudomonas aeruginosa] gi|167077405|gb|ABZ10933.1| resolvase [Klebsiella pneumoniae] gi|209574205|gb|ACI63092.1| site-specific recombinase, phage integrase family [Klebsiella pneumoniae] gi|209574215|gb|ACI63101.1| site-specific recombinase, phage integrase family [Klebsiella pneumoniae] gi|209574234|gb|ACI63120.1| site-specific recombinase, phage integrase family [Klebsiella pneumoniae] gi|289065758|gb|ADC80914.1| TnpR [Klebsiella pneumoniae] gi|293339405|gb|ADE43959.1| resolvase [Klebsiella pneumoniae] Length = 571 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 72/324 (22%), Positives = 131/324 (40%), Gaps = 44/324 (13%) Query: 27 IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 +ERG LS LT D + F+ T + + R E R F + + Sbjct: 254 VERGRALSSLTTD----DAIAYRAFVRHPTPRERWVGPPRPRDSVEWRPF-----SGGLS 304 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLH 144 RS +L+ + + ++L +++ + ++ + ++L AL+ + T + +LL Sbjct: 305 ARSAAYALTVLSALFRWLIEQRYVLANPFAGVK--VRGHALRPALDTARGFTEGEWLLLR 362 Query: 145 TSHET-----KWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDDQST---LRIQGK 193 + W + + ++L Y GLR SE + N+ D+ L + GK Sbjct: 363 AIADGLEWSYGWSEPAAQRLRFMLDFGYATGLRASELVGAVLGNVRLDEHGDHWLHLVGK 422 Query: 194 GDKIRIVPLLPSVRKAILEYYDLCPFDLN---LNIQLPLFRGIRGKPLNPG--------V 242 G K V L P A+ +Y ++ N + PL G G+ N G V Sbjct: 423 GGKPGKVALPPLAYTALDQYLAQRQLPVSRERWNPKTPLV-GSLGEDGNAGITGPHLWCV 481 Query: 243 FQRYIRQLRRYLGL--PLST------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 +R+ Q + P++ T H +RHS A+H L+ G L +++ L H ++T Sbjct: 482 LRRFFTQAAEAIEADHPVAAEKLRRATPHWMRHSHASHALARGAQLTAVRDNLRHASIAT 541 Query: 295 TQIYTNVNSKNGGDWMMEIYDQTH 318 T +Y + + M + + H Sbjct: 542 TSMYLHGDELERARQMRQAFGARH 565 >gi|27367129|ref|NP_762656.1| integrase [Vibrio vulnificus CMCP6] gi|27358697|gb|AAO07646.1|AE016810_149 Integrase [Vibrio vulnificus CMCP6] Length = 343 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%) Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 YI + + + LP +H LRHSFA+H + NGG++ ++ ILGH +S T Y + Sbjct: 271 YILKNKLGITLPSGQASHVLRHSFASHFMMNGGNILVLRDILGHADISMTMRYAH 325 >gi|37525910|ref|NP_929254.1| hypothetical protein plu1991 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785339|emb|CAE14284.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 206 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 68/151 (45%), Gaps = 2/151 (1%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEY 213 R+ ++Y+ + GLR+SEA L ++ + +L I+ KG I PLL +AI E+ Sbjct: 27 RDYCLVYMSFVHGLRVSEARYLRISDLDLEDGSLYIRRLKGGFSTIHPLLGYEIQAIREW 86 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 + LF G PL + I QL R + + + H LRH+ L Sbjct: 87 LKVRKTFRGAESDW-LFLSRSGNPLTRQRIYQLISQLGRLANISVGSHPHMLRHACGFAL 145 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 G D R IQ LGH + T YT N++ Sbjct: 146 ADRGIDTRLIQDYLGHSNIRHTVRYTASNAE 176 >gi|153956217|ref|YP_001396982.1| hypothetical protein CKL_3621 [Clostridium kluyveri DSM 555] gi|146349075|gb|EDK35611.1| Conserved protein [Clostridium kluyveri DSM 555] Length = 199 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 16/184 (8%) Query: 127 RALNEKQALTLVDNVL-LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQ 185 + L +++A +L + +TSH R+ I + Y CGLR+SE L Q+ + Sbjct: 10 KYLTQQEAYSLFKTIENTYTSHS-----LRDLVIFRIAYRCGLRVSEIALLKMQDYNASK 64 Query: 186 STL---RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242 L R++G + L S K IL+ Y + ++ Q+ LF + P++ Sbjct: 65 GELYCRRLKGSNNN---TLRLDSKTKYILDKY-IVENNITSTSQV-LFSSQKNNPISRQT 119 Query: 243 FQRYIRQLRRYLGLPLSTTAH--TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 +++ G+ + H L+H+ A HL + D++ +Q LGH +S T+IY Sbjct: 120 LDYLMKKYCSMAGIEDKSKHHFHALKHTTAVHLAESDMDIKELQWWLGHKSVSNTEIYFQ 179 Query: 301 VNSK 304 +K Sbjct: 180 FTTK 183 >gi|323484510|ref|ZP_08089875.1| phage integrase family Site-specific recombinase [Clostridium symbiosum WAL-14163] gi|323402088|gb|EGA94421.1| phage integrase family Site-specific recombinase [Clostridium symbiosum WAL-14163] Length = 280 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 11/134 (8%) Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226 G+RISE S+T Q + + + + +GK ++ LLP RK +++ L + +IQ Sbjct: 137 GIRISELPSITVQAVKNGVAQVDCKGKNRQV----LLP--RKLLVK---LMHYIRKEHIQ 187 Query: 227 L-PLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQ 284 P+F +G PL+ + ++++ R G+ H LRH FA D+ + Sbjct: 188 CGPIFITKQGNPLDRSNIWKEMKKICRLAGVNEKKVFPHNLRHLFAYSFYQMEKDIAKLA 247 Query: 285 SILGHFRLSTTQIY 298 +LGH ++TT+IY Sbjct: 248 DLLGHSNINTTRIY 261 >gi|254776174|ref|ZP_05217690.1| site-specific tyrosine recombinase XerC [Mycobacterium avium subsp. avium ATCC 25291] Length = 47 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 4/49 (8%) Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 THLL G DLR +Q +LGH L+TTQ+YT+V + ++DQ HP Sbjct: 1 THLLEGGADLRVVQELLGHSSLATTQLYTHVAVSR----LRAVHDQAHP 45 >gi|237718823|ref|ZP_04549304.1| integrase [Bacteroides sp. 2_2_4] gi|229451955|gb|EEO57746.1| integrase [Bacteroides sp. 2_2_4] Length = 386 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 36/57 (63%) Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 +Y+R+L+ G+ T H RH+ A+ +S G D+ +++ +LGH +++T++Y V Sbjct: 313 KYVRRLKEKAGIEKDLTYHCSRHTTASLAISAGADISAVKDVLGHGSITSTEVYAKV 369 >gi|328883029|emb|CCA56268.1| hypothetical protein SVEN_2982 [Streptomyces venezuelae ATCC 10712] Length = 414 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 73/182 (40%), Gaps = 40/182 (21%) Query: 165 GCGLRISEALSLTPQNIMDDQSTL-------RIQGK-------GDKIRIVPLLPSVRKAI 210 GCGLR E L+ + D L RI+GK G K+R VPL PSV A+ Sbjct: 215 GCGLRQGEVFGLSEDEVDHDGGWLSVEHQLKRIRGKFVFALPKGGKVRDVPLPPSVAAAL 274 Query: 211 LEYYD-LCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYI------------- 247 + + P + L + P +F G G + F ++ Sbjct: 275 KAHSEKYPPVRITLPWRTPDGPLVTKSLIFTGSAGGHIRVSHFNDFMWKPALAAVGIIPE 334 Query: 248 -RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKN 305 + RY P H LRH +A+ LL G ++R++ LGH T + YT++ + Sbjct: 335 PEEGERYASAP-EHGMHALRHFYASVLLDAGENIRALSQYLGHADPGFTLRTYTHLMPSS 393 Query: 306 GG 307 G Sbjct: 394 EG 395 >gi|289644915|ref|ZP_06476959.1| integrase family protein [Frankia symbiont of Datisca glomerata] gi|289505281|gb|EFD26336.1| integrase family protein [Frankia symbiont of Datisca glomerata] Length = 138 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/100 (37%), Positives = 47/100 (47%), Gaps = 8/100 (8%) Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR-QLRRYLG 255 + I PLL + + E P DL +F G PL F+RY+ R G Sbjct: 14 VPIPPLLVAYLRRHREIVPPAPDDL-------VFPDTVGHPLRRSNFRRYVWVPARGKAG 66 Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 LP S T H LRH +AT L+S G + +Q LGH STT Sbjct: 67 LPTSLTFHALRHCYATWLISEGVPVNVVQVALGHEHASTT 106 >gi|213691190|ref|YP_002321776.1| phage integrase family protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522651|gb|ACJ51398.1| phage integrase family protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457248|dbj|BAJ67869.1| putative phage integrase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 487 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 65/154 (42%), Gaps = 10/154 (6%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213 RN + L+Y RI E +LT +++ MD+ + + I GK K RIVP+ R+ + Y Sbjct: 255 RNRMLPILMYDTAARIGELAALTLEDVRMDEPARITITGKRGKTRIVPMGERTRRHLTSY 314 Query: 214 YD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL--------GLPLSTTAHT 264 D P + PLF R + P R L+ +P Sbjct: 315 LDEFHPDTDGSDGARPLFHSTRNGTIRPLSVDRIDEILKTAASKARGTCPSMPGRIHCRL 374 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 +R + A L G L ++ +LGH +STT + Sbjct: 375 IRRTRAMDLYQQGVPLPTVMQLLGHESMSTTSAF 408 >gi|254450297|ref|ZP_05063734.1| phage integrase [Octadecabacter antarcticus 238] gi|198264703|gb|EDY88973.1| phage integrase [Octadecabacter antarcticus 238] Length = 258 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 59/127 (46%), Gaps = 16/127 (12%) Query: 158 AILYLLYGCGLRISEALSLTPQNIM--------DDQSTLRI-QGKGDKIRIVPLLPSVRK 208 A L + YG GLR SE SL +I+ D+ + + +GKG K R V L P + Sbjct: 107 AALSISYGAGLRASEVCSLKVSDIVPLARLRHDSDRMLIHVDEGKGGKDRKVMLSPDLLD 166 Query: 209 AILEYYDLCPFDLNLNIQLPLFRG-IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRH 267 + +Y+ + LF G + P++ R + +GL T HTLRH Sbjct: 167 LLRDYWR------EARPEGWLFPGKPKITPISARQLSRSFNSAKHLVGLSKPATLHTLRH 220 Query: 268 SFATHLL 274 SFATHLL Sbjct: 221 SFATHLL 227 >gi|157324990|ref|YP_001468416.1| Int [Listeria phage A500] gi|66732998|gb|AAY52817.1| Int [Listeria phage A500] Length = 400 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/75 (42%), Positives = 46/75 (61%), Gaps = 4/75 (5%) Query: 229 LFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 LF + GKP+ P ++QR+ R L R+ LPL H LRH+ AT LL+ G D++ IQ L Sbjct: 312 LFADMEGKPIRPDSIYQRWRRFLERH-NLPL-IRFHDLRHTSATLLLNKGRDIKIIQERL 369 Query: 288 GH-FRLSTTQIYTNV 301 H ++T+ IY +V Sbjct: 370 RHKSSVTTSNIYAHV 384 >gi|157368467|ref|YP_001476456.1| integrase family protein [Serratia proteamaculans 568] gi|157320231|gb|ABV39328.1| integrase family protein [Serratia proteamaculans 568] Length = 191 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 63/150 (42%), Gaps = 3/150 (2%) Query: 155 RNSAILYLLYGCGLRISE--ALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212 RN+ +L++ + G R+SE + L +I D +R G + PL P RK + Sbjct: 29 RNTCLLWMCFVHGCRVSELTGMHLADLDIAGDSLYVRRLKNGLST-MQPLHPMERKLLAR 87 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 + LF +G L+ R ++ L GL ++ H LRH+ Sbjct: 88 WLQRRQSYPGAKDYDWLFLSHKGGRLSRSRIYRILKDLGERAGLSIAVHPHMLRHACGYA 147 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 L G D R IQ LGH + T +YT N Sbjct: 148 LADKGADTRLIQDYLGHRNIQHTVLYTASN 177 >gi|44004490|ref|NP_982158.1| site-specific tyrosine recombinase XerS [Bacillus cereus ATCC 10987] gi|42741556|gb|AAS45001.1| integrase/recombinase, phage integrase family protein [Bacillus cereus ATCC 10987] Length = 361 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 63/282 (22%), Positives = 119/282 (42%), Gaps = 40/282 (14%) Query: 57 KITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116 +I I+ + L E+ F +++ I +++ R+ S +KS KYL ++ N Sbjct: 71 EIPIELLESLPLNEVNRFHMYLKSEGIEIKAINRTFSALKSLFKYLSQKTEDEYGNSYLS 130 Query: 117 RNLKKSNSLPRA-LNEKQALTLVDNVLLHTSHETKWI----------------------- 152 RN+ L + ++ V N++ + + + ++ Sbjct: 131 RNVMDKIELHKEKIDAAARADDVANMIFNNNDDAAFLRFLANDYEFILKETSTRKYNYFL 190 Query: 153 --DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210 R+ A++ L+ G GLR+SE SL+ ++ Q T+++ KG+K + S + Sbjct: 191 RDKERDIALISLILGTGLRVSELASLSLSSVNFRQKTIKVIRKGNKKSSILATQSSLDDV 250 Query: 211 LEYYDL------CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL--RRYLGLPLSTTA 262 EY + CP + ++ +GK V R I+ L + + Sbjct: 251 QEYLKVRQERYGCPPEE----EIMFVTRYQGKYTQLSV--RAIQNLVDKYTSAFDEKRSP 304 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 H LRH++AT+ DL ++ LGH + T IYTN+N++ Sbjct: 305 HKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNE 346 >gi|325851898|ref|ZP_08171031.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325484675|gb|EGC87589.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 417 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 22/153 (14%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYDL 216 L+ C GL ++ LT ++I+ + I+ K + +PLLP AI+E Y Sbjct: 253 FLFSCYTGLSYTDVYHLTAEHIIHESDMDWIRKPRVKTGNLCHIPLLPEA-SAIIERYR- 310 Query: 217 CPFDLNLNIQLPLFRGIRGK----PLNPGV--FQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 I FR K P+ PG +++++ R G+ + T H RH+FA Sbjct: 311 -------GIHTRAFRHEPPKGYLLPI-PGCDTVNIHLKKIARLCGIQKTLTFHMARHTFA 362 Query: 271 THL-LSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + + LS G + S+ +LGH ++ TTQ+Y + Sbjct: 363 SQMTLSEGVSIESVSKMLGHSQIKTTQVYAETS 395 >gi|255690132|ref|ZP_05413807.1| integrase/recombinase, phage integrase family [Bacteroides finegoldii DSM 17565] gi|260624416|gb|EEX47287.1| integrase/recombinase, phage integrase family [Bacteroides finegoldii DSM 17565] Length = 327 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 63/253 (24%), Positives = 107/253 (42%), Gaps = 29/253 (11%) Query: 61 QTIRQLSYTEIRAFISKRR----TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116 + IR ++ ++R +++ + K+ +++R LS SF +L+ +S + + Sbjct: 86 KNIRHITTDDLRNYLNDYQQTSGATKVTVDNIRRILS---SFFSWLEDEDYIVKSPVRRI 142 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 +K ++ T D L + I R+ A++ LL G+R+ E + L Sbjct: 143 HKVKVGKTVKE--------TYSDEALEQMRDHCEGI--RDLALIDLLASTGMRVGELVKL 192 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 +I + + GKGDK R V + K L+ Y D N + + L Sbjct: 193 NRNDIDFENRECIVTGKGDKQRRV-YFDARTKIHLQRYLAERIDDNPALFVSLL-----A 246 Query: 237 PLN----PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 P + GV R +R+L R L +P H R + AT + G + +Q +LGH L Sbjct: 247 PYDRLQISGVEIR-LRRLGRELNIP-KVHPHKFRRTLATMAIDKGMPIEQVQHLLGHQSL 304 Query: 293 STTQIYTNVNSKN 305 TT Y VN N Sbjct: 305 DTTLQYAMVNQTN 317 >gi|116255542|ref|YP_771375.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv. viciae 3841] gi|115260190|emb|CAK03294.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv. viciae 3841] Length = 331 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 63/292 (21%), Positives = 114/292 (39%), Gaps = 22/292 (7%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 Q L +R +S T+ SY + FL F T + + + + AF+ +++ Sbjct: 15 QRLARQRNVSPHTIASYRDTFKLFLKFAHRRTGKFPSDLRLEDFDAELVVAFLDDLDSER 74 Query: 83 -IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD-- 139 + L+ I+SF ++L + I ++ ++P + K+ + + Sbjct: 75 HASPATYNLRLTAIRSFFRFLAFEEPAYSGQI------QRILAIPGKIGSKREVQFLTRS 128 Query: 140 --NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDK 196 +L W+ R+ ++ G+R+SE + L + + + +R GKG K Sbjct: 129 EIEAILSAPDRRTWVGRRDYVLMLTAVQTGMRLSELVGLDRSAVTIGTGAHIRCFGKGRK 188 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 R P+ + + + D P N N P G R ++P Q + + Sbjct: 189 ERTTPITRMLNVTLKAWLDEPPVG-NGNALFPTVHGGR---MSPDAVQYLLAKYVLTASK 244 Query: 257 PLST------TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 S+ + H LRHS A LL G D I LGH +TQ Y + + Sbjct: 245 GCSSLRSKRISPHVLRHSAAMELLDAGVDSTVISLWLGHESTRSTQPYLHAH 296 >gi|116686981|ref|YP_840228.1| phage integrase family protein [Burkholderia cenocepacia HI2424] gi|116652696|gb|ABK13335.1| phage integrase family protein [Burkholderia cenocepacia HI2424] Length = 559 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 78/314 (24%), Positives = 125/314 (39%), Gaps = 62/314 (19%) Query: 27 IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 +ERG LS LT + D + FL T + R E R F T + Sbjct: 248 VERGKALSSLTSE----DATAYRAFLRHPTPRARWVAPARPRPSPEWRPF-----TGALS 298 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNSL--PRALNEKQ---ALTL 137 S+ +LS + + ++L +++ ++ L +R +++ L RA + T+ Sbjct: 299 PDSIAYTLSVLSAMFRWLIEQRYVLANSFAGLRVRGAQRNGELDISRAFTAGEWELVRTI 358 Query: 138 VDNVLLHTSHETKWIDARNSAILYLL---YGCGLRISEALSLTPQNI---MDDQSTLRIQ 191 D L SH W + ++L Y GLR SE + +T I + L + Sbjct: 359 ADG--LERSH--GWTVPAAQRLRFVLDFGYATGLRASELVGVTLGGIETGARGERWLHLT 414 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP---------GV 242 GKG K V L P A+ +Y + LP+ R +P P G+ Sbjct: 415 GKGAKAGKVVLPPLATHALDQYL--------VQRGLPVT-SARWQPDTPLLGHLDAPGGI 465 Query: 243 FQRYIRQ-LRRYL---------------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286 +R+ LRR+ G T H +RH+ ATH L+NG L +++ Sbjct: 466 TTPRLREVLRRFFHAAADAIEADHPALAGKLRRATPHWMRHTHATHALANGATLTTVRDN 525 Query: 287 LGHFRLSTTQIYTN 300 L H ++TT IY + Sbjct: 526 LRHASITTTSIYLD 539 >gi|297163231|gb|ADI12943.1| phage integrase family protein [Streptomyces bingchenggensis BCW-1] Length = 354 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 79/185 (42%), Gaps = 17/185 (9%) Query: 154 ARNSAILYLLYGCGLRISEA---------LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 AR+ A+ LY GLR EA S P + + G + R VP+L Sbjct: 171 ARDYALFRTLYHAGLRSEEASLLEKPDAHFSRGPFGKLHVRFGKGAHTSGPRPRWVPMLD 230 Query: 205 SVRKAILEYY--DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-- 260 + +L ++ D+ P + + LF G L+ G + +R L G P + Sbjct: 231 GL-DLVLRWFLEDVRPKFPDSPV---LFADESGGSLHRGTIRNRLRYLMELEGRPTAERF 286 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPS 320 + H LR + ATH G DL +IQ +LGH+ +S+T Y ++ D T Sbjct: 287 SPHALRRACATHNYERGVDLVAIQQMLGHWTVSSTMRYVRPSATFIEDAYQRAVAGTLAE 346 Query: 321 ITQKD 325 +T+KD Sbjct: 347 LTEKD 351 >gi|282877655|ref|ZP_06286470.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] gi|307566135|ref|ZP_07628592.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|281300227|gb|EFA92581.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] gi|307345147|gb|EFN90527.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 422 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 73/162 (45%), Gaps = 26/162 (16%) Query: 167 GLRISEALSLTPQNI---MDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY--DLCPFD 220 GL + L P++I D +RI+ K D I+PLLP + K IL Y D D Sbjct: 257 GLARVDMQRLKPKHITHNADGTEEIRIKRQKTDVEAIIPLLP-IAKQILSLYIKDKKADD 315 Query: 221 L---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSN 276 L NL I+ F + N G R + L T H RH+F+T + LSN Sbjct: 316 LIFPNLTIRKASFACV-----NIGQICRIDKGL----------TFHMARHTFSTTICLSN 360 Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTH 318 G + ++ ILGH + TTQIY + + M + D+ H Sbjct: 361 GISMETLSKILGHSNIGTTQIYGKITDHKIQEDMTALTDREH 402 >gi|167752533|ref|ZP_02424660.1| hypothetical protein ALIPUT_00784 [Alistipes putredinis DSM 17216] gi|167762652|ref|ZP_02434779.1| hypothetical protein BACSTE_01009 [Bacteroides stercoris ATCC 43183] gi|167659602|gb|EDS03732.1| hypothetical protein ALIPUT_00784 [Alistipes putredinis DSM 17216] gi|167699758|gb|EDS16337.1| hypothetical protein BACSTE_01009 [Bacteroides stercoris ATCC 43183] Length = 409 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 20/150 (13%) Query: 162 LLYGC--GLRISEALSLTPQNIM-DDQSTL---RIQGKGDKIRIVPLLPSVRKAILEYYD 215 L+ C G+ ++A+S+T NI DD+ L ++ K + + V LLP A++E Y Sbjct: 253 FLFACYTGVPYADAVSITGDNIYKDDKGDLWLKYLRKKNEYLARVKLLPEA-IALIEKY- 310 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274 N + LF I +P + +R+++ LR G+ H RH+F + + L Sbjct: 311 ------RSNDREELFPMIH----HPNM-RRHMKGLRDLAGISCDLVYHMGRHTFGSLITL 359 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 G + +I +LGH L+TTQ+Y V K Sbjct: 360 EAGVPIETISKMLGHTNLTTTQLYARVTPK 389 >gi|153807716|ref|ZP_01960384.1| hypothetical protein BACCAC_01998 [Bacteroides caccae ATCC 43185] gi|160886162|ref|ZP_02067165.1| hypothetical protein BACOVA_04169 [Bacteroides ovatus ATCC 8483] gi|160889100|ref|ZP_02070103.1| hypothetical protein BACUNI_01521 [Bacteroides uniformis ATCC 8492] gi|149129325|gb|EDM20539.1| hypothetical protein BACCAC_01998 [Bacteroides caccae ATCC 43185] gi|156108047|gb|EDO09792.1| hypothetical protein BACOVA_04169 [Bacteroides ovatus ATCC 8483] gi|156861567|gb|EDO54998.1| hypothetical protein BACUNI_01521 [Bacteroides uniformis ATCC 8492] Length = 327 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 63/253 (24%), Positives = 107/253 (42%), Gaps = 29/253 (11%) Query: 61 QTIRQLSYTEIRAFISKRR----TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116 + IR ++ ++R +++ + K+ +++R LS SF +L+ +S + + Sbjct: 86 KNIRHITTDDLRNYLNDYQQTSGATKVTVDNIRRILS---SFFSWLEDEDYIVKSPVRRI 142 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 +K ++ T D L + I R+ A++ LL G+R+ E + L Sbjct: 143 HKVKVGKTVKE--------TYSDEALEQMRDHCEGI--RDLALIDLLASTGMRVGELVKL 192 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 +I + + GKGDK R V + K L+ Y D N + + L Sbjct: 193 NRNDIDFENRECIVTGKGDKQRRV-YFDARTKIHLQRYLAERIDDNPALFVSLL-----A 246 Query: 237 PLN----PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 P + GV R +R+L R L +P H R + AT + G + +Q +LGH L Sbjct: 247 PYDRLQISGVEIR-LRRLGRELNIP-KVHPHKFRRTLATMAIDKGMPIEQVQHLLGHQSL 304 Query: 293 STTQIYTNVNSKN 305 TT Y VN N Sbjct: 305 DTTLQYAMVNQTN 317 >gi|167759261|ref|ZP_02431388.1| hypothetical protein CLOSCI_01608 [Clostridium scindens ATCC 35704] gi|167663135|gb|EDS07265.1| hypothetical protein CLOSCI_01608 [Clostridium scindens ATCC 35704] Length = 287 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 66/276 (23%), Positives = 116/276 (42%), Gaps = 36/276 (13%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87 ER +K T++ Y D R F F+ +IT + + LSY E + S Sbjct: 21 ERENAKATIRKYLTDIRTFYNFMG--ENRRITKEQL--LSYKEWLV-------EHYAISS 69 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD-NVLLHTS 146 + L+ + FL++L + L ++ ++ +L E + + D L+ T+ Sbjct: 70 VNSMLAALNQFLEFLGGER-------LKLKRIRVQGTL--LTGEAREMEKTDYKRLVETA 120 Query: 147 HETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 E + R L + C G+R+SE T +++ +++ KG K R+VP+ Sbjct: 121 ME----EGRVQLALMMETMCATGIRVSELEYFTVESL--RSGMVKVWNKG-KYRMVPMPE 173 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAH 263 ++K + Y + + +FR G P N + ++ L G+ P H Sbjct: 174 MLKKNLQRYVEREGIQTGV-----IFRTRNGNPKNRSNIWKEMKSLAGRAGVDPDKIFPH 228 Query: 264 TLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 LRH FA +L ++ ILGH L T++YT Sbjct: 229 NLRHLFARTFYKGTNNLVNLAEILGHSSLEITRVYT 264 >gi|313146639|ref|ZP_07808832.1| integrase [Bacteroides fragilis 3_1_12] gi|313135406|gb|EFR52766.1| integrase [Bacteroides fragilis 3_1_12] Length = 320 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/248 (21%), Positives = 104/248 (41%), Gaps = 23/248 (9%) Query: 52 FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES 111 ++T K + +++ R FI +K +++ ++ I+ F K++KK E Sbjct: 77 YHTSMKKYFEYANEVNMDNCRRFIKMLEEEKFAPATIRLRITAIERFSKWMKK---PLEL 133 Query: 112 NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171 M+ +N++P E + L++ + ++ + + + +L G R+S Sbjct: 134 KRPKMKRKLDTNNVP---TEDEYNRLLEYLKTKSNKDYYFF-------IRVLGTTGARLS 183 Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231 E L T ++I+ + TL+ GKG+K R +++ + Y C + LF Sbjct: 184 EFLQFTWEDIISGEVTLK--GKGNKYRRFFFQKQLQQEVKAYAKECG-------KTGLFA 234 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290 R P+ + ++ G+ H RH FA L D+ + +LGH Sbjct: 235 VGRFGPMTQRGLSQGMKAWGNCCGIDKKKMHPHAFRHFFAKMFLKKNKDVIQLADLLGHG 294 Query: 291 RLSTTQIY 298 + TT+IY Sbjct: 295 SVDTTRIY 302 >gi|189460579|ref|ZP_03009364.1| hypothetical protein BACCOP_01220 [Bacteroides coprocola DSM 17136] gi|189432823|gb|EDV01808.1| hypothetical protein BACCOP_01220 [Bacteroides coprocola DSM 17136] Length = 149 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 45/85 (52%) Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291 G+ LN + ++Q+ R G+ + + H+ RH FAT LS G + S+ +LGH Sbjct: 53 GLVFPSLNYWSICKPLKQMIRECGISKNISFHSSRHGFATLALSKGVPIESVSRVLGHTN 112 Query: 292 LSTTQIYTNVNSKNGGDWMMEIYDQ 316 ++TTQ Y + ++N ++ D+ Sbjct: 113 ITTTQKYCKITTENIDKYLTMFADR 137 >gi|189017167|ref|YP_001909484.1| Predicted phage integrase [Erwinia tasmaniensis Et1/99] gi|188027104|emb|CAO94888.1| Predicted phage integrase [Erwinia tasmaniensis Et1/99] Length = 299 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 31/46 (67%) Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 ++ T HT RHSFA HLL +G ++IQ +LGH +T++YT V S Sbjct: 230 ITVTPHTFRHSFAMHLLMSGVPEKTIQGLLGHRYARSTEVYTRVFS 275 >gi|163846861|ref|YP_001634905.1| integrase domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222524682|ref|YP_002569153.1| integrase domain-containing protein SAM domain-containing protein [Chloroflexus sp. Y-400-fl] gi|163668150|gb|ABY34516.1| integrase domain protein SAM domain protein [Chloroflexus aurantiacus J-10-fl] gi|222448561|gb|ACM52827.1| integrase domain protein SAM domain protein [Chloroflexus sp. Y-400-fl] Length = 317 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 63/307 (20%), Positives = 131/307 (42%), Gaps = 46/307 (14%) Query: 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRA 73 ++ E + +L +L+ + GLS T+ SY CD R + L+ Q + ++ +I+ Sbjct: 15 IISELEQFLHDLKCDDGLSDNTITSYRCDLRTAGLALS---------QELSAITTADIQQ 65 Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 F+++R+ Q + R ++ + F ++ +R T + + + + P+ + + Sbjct: 66 FLARRQEQP---GTTNRRIASLGRFFRWALERGYVTHNPVEQIDGRLPTEHRPQPITNEA 122 Query: 134 ALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM--DDQSTLRIQ 191 L +D + + I +L G+R E L+L +++ + L +Q Sbjct: 123 ELRALDQAIAAAPQPYRL-------IFTMLREIGIRTDEVLNLNVGDVILEPGREMLLVQ 175 Query: 192 -GKGDKIRIVPLLPSVRKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLN-PGVFQRYI- 247 K R++ L P L + D+ + + PLFR RG ++ + +R++ Sbjct: 176 DSKSGSKRMIVLTPDAMPRSLRGLRVWVRDMEDAAPETPLFRSSRGTRVSYDTLHRRWVA 235 Query: 248 -------------RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 R+ RY T H LRH+ A L++ + + ++ ILGH + Sbjct: 236 VCKAARLIDIVDGREQPRY-------TLHHLRHTAAAELIAFYPE-QVVRRILGHRDPRS 287 Query: 295 TQIYTNV 301 T+ Y+ + Sbjct: 288 TRRYSEL 294 >gi|325840448|ref|ZP_08167047.1| site-specific recombinase, phage integrase family [Turicibacter sp. HGF1] gi|325490315|gb|EGC92644.1| site-specific recombinase, phage integrase family [Turicibacter sp. HGF1] Length = 371 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 3/75 (4%) Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 G P+NP F I ++ + L +P+ H LRH+ AT LL + +++ IQ LGH +ST Sbjct: 288 GTPINPKRFSTQINRISKRLNIPIK--FHNLRHTHATLLLESDVNIKVIQERLGHSDIST 345 Query: 295 T-QIYTNVNSKNGGD 308 T +Y++V K + Sbjct: 346 TLNVYSHVTQKTEAE 360 >gi|317009814|gb|ADU80394.1| bacteriophage-related integrase [Helicobacter pylori India7] Length = 382 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 21/153 (13%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK------------IRIVPL 202 R A L + + GLR E L+L ++I ++ T+ I ++ +R V L Sbjct: 216 RLKAFLMVAFFTGLRTGEQLALMWEDIDFNEKTIIINKSLNELGQITSPKNKPSVREVDL 275 Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 L V K + E + P + +F + P VFQR+ ++L + L L Sbjct: 276 LEPVEKILKELKESEPANKKF-----VFIDM---PKRSSVFQRHFKKLLKALNLE-DRKL 326 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 +T RH+FA+ +LS G + + +LGH L+TT Sbjct: 327 YTTRHTFASLMLSQGEEAMWVSKMLGHKDLNTT 359 >gi|317480894|ref|ZP_07939975.1| phage integrase [Bacteroides sp. 4_1_36] gi|316902979|gb|EFV24852.1| phage integrase [Bacteroides sp. 4_1_36] Length = 356 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 30/149 (20%) Query: 163 LYGC--GLRISEALSLTPQNIM---DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 L+ C GLR+S+ + L +NI+ D + I K K +LP +A+ LC Sbjct: 203 LFSCLTGLRLSDCIRLQWENIIKLADGGWGMDIITK--KTSTAAILPISEEAL----QLC 256 Query: 218 PFDLNLNIQLPLFRGIRG-----KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 G RG K L Y++ + G+ T H RH+FAT Sbjct: 257 --------------GERGTGQVFKNLTNSTVTLYLKPWIKASGIEKHITFHCFRHTFATL 302 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 L+ G D+ ++ +L H L+TTQ+Y +V Sbjct: 303 QLAEGTDIYTVSKLLTHSNLATTQVYADV 331 >gi|134278599|ref|ZP_01765313.1| site-specific recombinase, phage integrase family protein [Burkholderia pseudomallei 305] gi|134250383|gb|EBA50463.1| site-specific recombinase, phage integrase family protein [Burkholderia pseudomallei 305] Length = 561 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 78/310 (25%), Positives = 125/310 (40%), Gaps = 57/310 (18%) Query: 27 IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 +ERG LS LT D + FL T + + R + E R F T + Sbjct: 252 VERGCALSSLTTD----DAIAYRSFLRRPTPRERWVGPSRPRHHIEWRPF-----TGPLS 302 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMR---NLKKSN-SLPRALNEKQAL---TL 137 RS +L+ + + ++L +++ + ++ +++++ + R E + L TL Sbjct: 303 ARSAAYALNVLSALFRWLVEQRYVLANPFAGVKIKSHVQRAGLDMSRGFTEGEWLLIRTL 362 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST---LRIQGKG 194 D + R +L Y GLR SE +S T +I D+ L + GKG Sbjct: 363 ADGLEWSYGWSAP-AAQRLRFVLDFGYATGLRASELVSATLGDIRRDEHGDHWLHVLGKG 421 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ---------- 244 K+ V LPS+ + L+ Y + LP+ R P P V Sbjct: 422 GKLGKV-ALPSLARTALDQY-------LVQRGLPVTPA-RWNPATPLVVSLDEDGAGIES 472 Query: 245 -RYIRQLRRYLGL---------PLST------TAHTLRHSFATHLLSNGGDLRSIQSILG 288 R R LRR+ L P + + H LRHS A+H L+ G +L +++ L Sbjct: 473 TRLWRVLRRFFVLVADVLPSERPATAEKLRRASPHWLRHSHASHALARGAELITVRDNLR 532 Query: 289 HFRLSTTQIY 298 H +STT Y Sbjct: 533 HASISTTSTY 542 >gi|29349957|ref|NP_813460.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|29341868|gb|AAO79654.1| integrase [Bacteroides thetaiotaomicron VPI-5482] Length = 372 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 68/146 (46%), Gaps = 14/146 (9%) Query: 163 LYGC--GLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219 L+ C LRIS+ L+L + I+D + + + K + ++P +A Sbjct: 224 LFSCLTSLRISDILTLRWEEIVDFAAGGKCVHTVTQKTKTEDIIPISDEA---------- 273 Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279 L L P G+ K L Q +++ R G+ + T H+ R +FAT + G D Sbjct: 274 -LQLIGYSPEKTGLVFKGLKRCWTQYPMKEWIRAAGITKNITFHSYRRTFATLQAAAGTD 332 Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKN 305 +R+IQSI+ H ++TTQ Y V N Sbjct: 333 IRTIQSIMAHKSITTTQRYMKVVDSN 358 >gi|300854166|ref|YP_003779150.1| putative phage-like integrase [Clostridium ljungdahlii DSM 13528] gi|300434281|gb|ADK14048.1| putative phage-related integrase [Clostridium ljungdahlii DSM 13528] Length = 121 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 8/108 (7%) Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR--GKPLNPGVFQRYIRQLRRYLGLP 257 +PLL +++ A+L+Y D +I +F GIR G+ L R + + + Sbjct: 1 MPLLENIKYALLDYLKNSRPDTKSDI---IFIGIRNGGRQLTNTCIHRIVSKYFIKSNID 57 Query: 258 LST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 +S H +RHS A++LL N + I+ +LGH L+TT++Y N+N Sbjct: 58 ISKRKHGPHAMRHSLASNLLHNNTPMHIIKEVLGHSNLNTTRMYLNIN 105 >gi|294919371|ref|XP_002778525.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] gi|239887015|gb|EER10320.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] Length = 122 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 51 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 94 >gi|323963811|gb|EGB59309.1| phage integrase [Escherichia coli M863] Length = 123 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 55 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 95 >gi|315149122|gb|EFT93138.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0012] Length = 309 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 13/147 (8%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV------RKAILE 212 + L+ GLR SEAL+LTP++ + + I+ + S RK ++ Sbjct: 141 FILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKNSTGFFQSTKNESSKRKVQID 200 Query: 213 YYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 + F N+ P+F ++G+ N + R ++ L + +P+ T H+LRH+ Sbjct: 201 WQTAMQFSQLIRNMPPMEPIF--VKGRVFNSTINSR-LKVLCKRAQIPV-ITVHSLRHTH 256 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ 296 A+ LL G + S+ + LGH ++TTQ Sbjct: 257 ASLLLFAGVSIASVATRLGHSSMTTTQ 283 >gi|237722683|ref|ZP_04553164.1| mobilizable transposon [Bacteroides sp. 2_2_4] gi|229448493|gb|EEO54284.1| mobilizable transposon [Bacteroides sp. 2_2_4] Length = 386 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 69/155 (44%), Gaps = 30/155 (19%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219 L+ C GLR S+ LT + Q GD RIV + EY Sbjct: 239 FLFSCLTGLRKSDIQKLTWSEV---------QKFGDYTRIV--FKQKKTGGQEY------ 281 Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIR------QLRRY---LGLPLSTTAHTLRHSFA 270 L+++ Q + G RG P + VF + +L+R+ + + T H RH+FA Sbjct: 282 -LDISSQAEKYLGERGNPEDL-VFTGFTYGAWTSLELQRWSMAANINKNLTFHCGRHTFA 339 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 +L G D+ ++ +LGH L+TTQIY V KN Sbjct: 340 VLMLDLGADIYTVSKLLGHKELATTQIYAKVLDKN 374 >gi|200388050|ref|ZP_03214662.1| phage integrase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199605148|gb|EDZ03693.1| phage integrase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 337 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 64/143 (44%), Gaps = 23/143 (16%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQST-LRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 I + G R SEA +N+ Q T RI K K R V +P + E Y+ Sbjct: 198 IAKICLATGARWSEA-----ENLEGSQVTPYRITYKNTKSRKVRSIPISK----ELYN-- 246 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 ++P RG P F+R + + + LP H LRH+FA+H + NG Sbjct: 247 --------EIPKKRGQLFTPCRK-TFERTV--AKAGIELPEGQCTHVLRHTFASHFMMNG 295 Query: 278 GDLRSIQSILGHFRLSTTQIYTN 300 G++ ++ ILGH + T IY + Sbjct: 296 GNILVLKEILGHSDIKMTMIYAH 318 >gi|167751073|ref|ZP_02423200.1| hypothetical protein EUBSIR_02058 [Eubacterium siraeum DSM 15702] gi|167655991|gb|EDS00121.1| hypothetical protein EUBSIR_02058 [Eubacterium siraeum DSM 15702] Length = 244 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 59/236 (25%), Positives = 96/236 (40%), Gaps = 54/236 (22%) Query: 116 MRNLKKSNSLPR----ALNEKQALTLVDNVLLHTSHETK-WIDARNSAILYLLYGCGLRI 170 M ++KKS++ + AL E+Q V+ S++ K W+ + +L G G RI Sbjct: 1 MADIKKSHTWEKPKRHALTEQQQEKFVE--FTTQSYQYKHWL-----PLFTVLLGTGGRI 53 Query: 171 SEALSLT------PQNIMDDQSTLRIQGKGDK--------------IRIVPLLPSVRKAI 210 E L L P +I++ TL + D+ +RI+P+L V+ A+ Sbjct: 54 GEILGLRWEDCDFPNSIININHTLIYRKYTDEASHFAITTPKTKSGVRIIPMLSDVKAAL 113 Query: 211 LEYYDLCPFDLNLNIQLP------LFRGIRGKPLNPGVFQR---------------YIRQ 249 E Y + N + +F+ L+P R Y + Sbjct: 114 TEEYKE-QLESGFNESVVDGYSGFIFKSRDNTVLSPHCVNRAIDWIIKACNAKEEEYAKA 172 Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 RR L + H LRH+F T N +L+ IQ I+GH ++TT N +K+ Sbjct: 173 ERREPELLPHFSCHHLRHTFCTRFCENETNLKIIQEIMGHADITTTMDIYNEATKD 228 >gi|157371111|ref|YP_001479100.1| integrase family protein [Serratia proteamaculans 568] gi|157322875|gb|ABV41972.1| integrase family protein [Serratia proteamaculans 568] Length = 198 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 1/150 (0%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213 R+S ++++ + G R+SE L ++ M+ + K I PL + + + + Sbjct: 31 RDSCLIWMGFIHGCRVSELNGLRMADLDMESGCVYMNRLKNGLSTIHPLETTEKNLLTRW 90 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 + NL + LF +G L+ R ++ + GL + H LRH+ L Sbjct: 91 LEKRRSCRNLEDEEWLFLSQKGYRLSRQRIYRMLQAYGKQAGLDVDAHPHMLRHACGYAL 150 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 NG D R IQ LGH + T +YT N+ Sbjct: 151 ADNGADTRVIQDYLGHRNIQHTVLYTAANA 180 >gi|38637713|ref|NP_942687.1| putative integrase/recombinase [Ralstonia eutropha H16] gi|32527051|gb|AAP85801.1| putative integrase/recombinase [Ralstonia eutropha H16] Length = 415 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 64/247 (25%), Positives = 112/247 (45%), Gaps = 20/247 (8%) Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL---KKRKITTESNILNMRNLKK 121 +L+ ++R FI ++ +K G + K + ++ +++L K E+ I + + Sbjct: 163 KLNAMDLRQFILEQSMKK-GWAAAKHCTTALRMLVRFLIAEGKCAAGLEAAIPVLAHWSL 221 Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 S +LPR L L V+ V+ + + R+ AIL LL GLR + L +I Sbjct: 222 S-TLPRYLQ----LDEVERVIASCDTASP-VGQRDRAILLLLARLGLRAGDIWHLRIGDI 275 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY----DLCPFDLNLNIQLPLFRGIRGKP 237 +++ + GK + ++PL V +AI++Y D F+ Sbjct: 276 DWKDASISVSGKNGRQTLLPLTQEVGQAIVDYLRQGRPRTDTDTVFVRACAPFQAF---- 331 Query: 238 LNPGVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 N +++ R G+ S+ AH LRHS AT +L G L+ I ++L H ++TT Sbjct: 332 ANHAAISIIVKKAMRRAGVVCSSRGAAHVLRHSVATSMLGQGASLQDIAAVLRHQSVATT 391 Query: 296 QIYTNVN 302 QIY V+ Sbjct: 392 QIYAKVD 398 >gi|290474039|ref|YP_003466913.1| integrase [Xenorhabdus bovienii SS-2004] gi|289173346|emb|CBJ80123.1| Integrase [Xenorhabdus bovienii SS-2004] Length = 354 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 25/144 (17%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 I+ + G R SEA LT I + T + KG + R VP+ E YD P Sbjct: 194 IVKIALSTGARWSEAAGLTDSQITPYKITF-TKTKGKRNRTVPITK-------ELYDEIP 245 Query: 219 FDLNLNIQLPLFRGIRGKPLNP--GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 +GK + F+ ++Q + LP ++H +RH+FA+H + + Sbjct: 246 -------------KRKGKLFSSCYNAFRTAVKQAG--IELPSHQSSHVMRHTFASHFMMS 290 Query: 277 GGDLRSIQSILGHFRLSTTQIYTN 300 GG++ +Q ILGH + T Y + Sbjct: 291 GGNIIVLQRILGHTDIKMTMRYAH 314 >gi|257417156|ref|ZP_05594150.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG] gi|257158984|gb|EEU88944.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG] Length = 309 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 13/147 (8%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV------RKAILE 212 + L+ GLR SEAL+LTP++ + + I+ + S RK ++ Sbjct: 141 FILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKNPTGFFQSTKNESSKRKVQID 200 Query: 213 YYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 + F N+ P+F ++G+ N + R ++ L + +P+ T H+LRH+ Sbjct: 201 WQTAMQFSQLIRNMPPMEPIF--VKGRVFNSTINSR-LKVLCKRAQIPV-ITVHSLRHTH 256 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ 296 A+ LL G + S+ + LGH ++TTQ Sbjct: 257 ASLLLFAGVSIASVATRLGHSSMTTTQ 283 >gi|255690122|ref|ZP_05413797.1| mobilizable transposon, int protein [Bacteroides finegoldii DSM 17565] gi|260624404|gb|EEX47275.1| mobilizable transposon, int protein [Bacteroides finegoldii DSM 17565] Length = 337 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 18/148 (12%) Query: 163 LYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220 L+ C LRIS+ L+L ++I+D + G K V ++ KA D+ P Sbjct: 189 LFSCMTSLRISDILALCWEDIVDYSA-------GGKC--VHIITQKNKA----EDIIPIS 235 Query: 221 ---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 L L +G+ K L Q +++ R G+ + T H+ R +FAT + G Sbjct: 236 EEALGLIGYSSEKKGLVFKGLMRSWTQAPMKEWIRSAGITKNITFHSYRRTFATLQAAAG 295 Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKN 305 D+R+IQSI+ H ++TTQ Y V N Sbjct: 296 TDIRTIQSIMAHKSITTTQRYIKVVDAN 323 >gi|312129828|ref|YP_003997168.1| integrase family protein [Leadbetterella byssophila DSM 17132] gi|311906374|gb|ADQ16815.1| integrase family protein [Leadbetterella byssophila DSM 17132] Length = 405 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 26/164 (15%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQ----STLRIQGKGDKIRIVPL------------ 202 ++ +Y GLR S+ +SL ++ + T+R G+ +I + Sbjct: 239 FIFSVYAGGLRFSDVVSLKWEHYNKKEQRITKTIRKTGRNHNFKIGQIAIDILNKYKTEI 298 Query: 203 -LPS-VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 LPS I+E D+ FD + + Q + I K + G + +R+L + + LP + Sbjct: 299 SLPSDFVFPIIE--DVERFDADTDYQAYI---INAKNILCG---QKLRRLGKDMELPFTL 350 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + H RH+FAT+ L+NG + + +L H + TQIY V S+ Sbjct: 351 SFHLSRHTFATNALNNGMRIEYVSKLLDHSDIGITQIYAKVISE 394 >gi|296164229|ref|ZP_06846822.1| site specific recombinase XerD [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900420|gb|EFG79833.1| site specific recombinase XerD [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 342 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 56/239 (23%), Positives = 102/239 (42%), Gaps = 29/239 (12%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S++R S + +L ++ + + + K SLP+ L + L+ + Sbjct: 88 SIRRCWSTWNTLCAFLYTDELIPSNPMPLIGRPKVPKSLPKGLGTETVSGLLAAIDADAG 147 Query: 147 HE--TKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST-----LRIQGKGDKIRI 199 + + W + R++A++ GLR E L N+ D ++T + ++GKG+K R Sbjct: 148 SQRRSDWPE-RDAALVLTAVLAGLRADELLR---ANVGDIRTTTEGGVIHVRGKGNKDRR 203 Query: 200 VPLLPSVRKAILEYYDL----CPFD-----LNLNI-----QLPLFRGIRGKPLNPGVFQR 245 +P+ ++ K + Y D P D ++ I LF G G + GV Q Sbjct: 204 IPVEEALIKVLETYLDSRAVRFPADTKRRGASVGIGAWPTTAALFVGSTGDRITRGVLQY 263 Query: 246 YIRQLRRYLGL----PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + + + GL H LRH FAT L ++ + + +LGH + T+Q Y + Sbjct: 264 RVLRAFKKAGLNSQRARGAMVHALRHEFATQLANSDTSVYVLMKLLGHESMVTSQRYVD 322 >gi|282892190|ref|ZP_06300661.1| hypothetical protein pah_c212o013 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281497924|gb|EFB40272.1| hypothetical protein pah_c212o013 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 313 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 71/285 (24%), Positives = 126/285 (44%), Gaps = 24/285 (8%) Query: 27 IERGLSKLTLQSYECDT--RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 IER +S + ++ DT RQ F + E+ + ++ +++ +I A+ Sbjct: 23 IERFISSIDAKANSKDTYKRQIKPFFE-WVSERYSFNSLHKMTQQDIFAYKEFLVRDGKS 81 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNIL-NMRNLKKSNSLPR-ALNEKQALTLVDNVL 142 ++ L+ ++ F ++L+ KI NI +++ LKK + L +Q T + + Sbjct: 82 AYTISGYLTAVRKFFEWLESNKIF--PNIAKSVKGLKKPKGFRKDCLTVEQIRTALSSFD 139 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD--QSTLRIQGKG--DKIR 198 + TS R+ A+ LL GLR E T ++ + ++ L+IQGKG K Sbjct: 140 VETSD-----GLRDYALFNLLVRTGLRTVEISRATVGDLRQESGEAILQIQGKGRDSKDD 194 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI----RGKPLNPGVFQRYIRQLRRYL 254 V L+ + + +Y L+ + PLF G+PL I++ R + Sbjct: 195 FVLLVDETLRPLRKY---LASRGALSEKDPLFSSTSNRTNGEPLKERTISWIIKETLRRI 251 Query: 255 GLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + S TAH+LRH+ + + NG L Q++ H TT IY Sbjct: 252 DIDDSRLTAHSLRHTAVSLSIKNGASLIQAQAMARHSDPKTTMIY 296 >gi|238755955|ref|ZP_04617281.1| Resolvase [Yersinia ruckeri ATCC 29473] gi|238705807|gb|EEP98198.1| Resolvase [Yersinia ruckeri ATCC 29473] Length = 259 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 30/44 (68%) Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A HLL G L+ +QS++GH L +T++YT + Sbjct: 187 VPVTPHTFRHSYAMHLLYAGVPLKVLQSLMGHKSLKSTEVYTRI 230 >gi|221198562|ref|ZP_03571607.1| phage integrase family protein [Burkholderia multivorans CGD2M] gi|221207791|ref|ZP_03580798.1| phage integrase family protein [Burkholderia multivorans CGD2] gi|221172288|gb|EEE04728.1| phage integrase family protein [Burkholderia multivorans CGD2] gi|221181013|gb|EEE13415.1| phage integrase family protein [Burkholderia multivorans CGD2M] Length = 575 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 78/320 (24%), Positives = 128/320 (40%), Gaps = 70/320 (21%) Query: 27 IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 +ERG LS LT + D + FL T + I +R + R F + + Sbjct: 258 VERGRALSSLTTE----DALAYRTFLRRPTPHERWIGPVRPRGAPDWRPF-----SGALS 308 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNSLPRALNEKQALTLVDNVL 142 RS +LS + + ++L +++ + + +R+ + ++ AL+ A T + +L Sbjct: 309 ARSAAYALSVLGAMFRWLIEQRYVLANPFAGVKVRDTRGAS----ALDTSHAFTEGEWLL 364 Query: 143 LHT---SHETKWIDA-----------RNSAILYLLYGCGLRISEALSLTPQNIMDD---Q 185 + T E + D R IL Y GLR SE + T +I D Sbjct: 365 VRTIADGLEFRKTDVPAAAWTPAAAQRLRFILDFGYATGLRASELVGATLGDIDTDAHGD 424 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP----- 240 + L++ GKG K V L P R A+ Y + +LP+ +R +P P Sbjct: 425 AWLKVVGKGSKAARVALPPLARTALDRYL--------VARRLPVT-PVRWRPDTPLIPRL 475 Query: 241 --------------GVFQRYIRQLRRYLGL--PL------STTAHTLRHSFATHLLSNGG 278 V QR+ Q + P + H +RH+ ATH L+ G Sbjct: 476 TEDGAAPITSVRLWKVMQRFFVQTADLIEADNPALAQKLRQASPHWMRHTHATHALARGA 535 Query: 279 DLRSIQSILGHFRLSTTQIY 298 +L +++ L H +STT IY Sbjct: 536 ELTTVRDNLRHASISTTSIY 555 >gi|323694873|ref|ZP_08109025.1| phage integrase family Site-specific recombinase [Clostridium symbiosum WAL-14673] gi|323501067|gb|EGB16977.1| phage integrase family Site-specific recombinase [Clostridium symbiosum WAL-14673] Length = 280 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 11/134 (8%) Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226 G+RISE S+T Q + + + + +GK ++ LLP RK +++ L + +IQ Sbjct: 137 GIRISELPSITVQAVKNGVAEVDCKGKNRQV----LLP--RKLLVK---LMYYIRKEHIQ 187 Query: 227 L-PLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQ 284 P+F +G PL+ + ++++ R G+ H LRH FA D+ + Sbjct: 188 CGPIFITKQGNPLDRSNIWKEMKKICRLAGVNEKKVFPHNLRHLFAYSFYQMEKDIAKLA 247 Query: 285 SILGHFRLSTTQIY 298 +LGH ++TT+IY Sbjct: 248 DLLGHSNINTTRIY 261 >gi|295841268|dbj|BAJ07038.1| integrase [uncultured bacterium] Length = 249 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 88/206 (42%), Gaps = 52/206 (25%) Query: 108 TTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167 T ++ + + KKS LP LN ++ T+ K + + LLYG G Sbjct: 57 TALGDLGDFAHSKKSRRLPVVLNWRE-----------TARLFKQLKGTQKLVSGLLYGSG 105 Query: 168 LRISEALSLTPQNIMDD--QSTLRIQGKGDKIRIVPLLPSVRKAILEYY----------D 215 LR+ EAL L ++I D Q T+R GKG K R+ +LP+ ++ LE + D Sbjct: 106 LRLMEALRLRVKDIDFDLMQITVR-DGKGKKDRVT-VLPARYRSSLEGHLGKVRAVHRLD 163 Query: 216 L------CPFDLNLNIQLP-----------------LFR----GIRGKPLNPGVFQRYIR 248 L F +L+++ P LF G+ L+ QR +R Sbjct: 164 LENSYLGATFWPSLSLKYPHAPRQWIWQYVFPAARLLFDREAGGVLRHHLHETSLQRAVR 223 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLL 274 Q + T HTLRHSFATHLL Sbjct: 224 QASVRADISKRVTCHTLRHSFATHLL 249 >gi|257439570|ref|ZP_05615325.1| transposase [Faecalibacterium prausnitzii A2-165] gi|257198017|gb|EEU96301.1| transposase [Faecalibacterium prausnitzii A2-165] Length = 417 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 77/167 (46%), Gaps = 35/167 (20%) Query: 162 LLYGCGLRISEALSLTPQNI-MD------DQSTLRIQGKGDKI---------RIVPLLPS 205 +L G GLRISE LT +I +D D L+I G + R++P+ Sbjct: 238 ILLGTGLRISELCGLTEADIDLDKQLINVDHQLLKIADVGYYVETPKTKSGNRVIPMSEK 297 Query: 206 VRKA--------------ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 V +A ILE Y F LN N LP + + + G+ ++Y + + Sbjct: 298 VLEAFQRVLNKRKYAQPVILEGYTKFLF-LNRN-GLPKV-AVNYESMFRGLVRKYTKTQK 354 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + LP T HTLRH+F T L + G + +++Q I+GH ++ T Y Sbjct: 355 --VALPKVMTPHTLRHTFCTTLANAGMNPKALQYIMGHSNINMTLNY 399 >gi|229035345|ref|ZP_04189251.1| Integrase [Bacillus cereus AH1271] gi|228727958|gb|EEL79028.1| Integrase [Bacillus cereus AH1271] Length = 364 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 72/328 (21%), Positives = 137/328 (41%), Gaps = 51/328 (15%) Query: 22 LQNLEIERGLSKLTLQSYECDTRQFLIFLA----------FYTE-EKITIQTIRQLSYTE 70 ++ +E++ LS TL Y + +F ++ TE +I I+ + L E Sbjct: 28 VEYIEMKAMLSPATLYGYITEFEKFFKWMIEKRIAVINGNVATEIHEIPIELLESLPLNE 87 Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRA-L 129 + F +++ I +++ R+ S +KS KYL ++ N RN+ L + + Sbjct: 88 VNRFHMYLKSEGIEIKAINRTFSALKSLFKYLSQKTEDEYGNSYLSRNVMDKIELHKEKI 147 Query: 130 NEKQALTLVDNVLLHTSHETKWI-------------------------DARNSAILYLLY 164 + V N++ + + + ++ R+ A++ L+ Sbjct: 148 DAAARADDVANMIFNNNDDAAFLRFLANDYEFILKETSTRKYNYFLRDKERDIALISLIL 207 Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL------CP 218 G GLR+SE SL+ ++ Q T+++ KG+K + S + EY + CP Sbjct: 208 GTGLRVSELASLSLSSVNFRQKTIKVIRKGNKKSSILATQSSLDDVQEYLKVRQERYGCP 267 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL--RRYLGLPLSTTAHTLRHSFATHLLSN 276 + ++ +GK V R I+ L + + H LRH++AT+ Sbjct: 268 PEE----EIMFVTRYQGKYTQLSV--RAIQNLVDKYTSAFDEKRSPHKLRHTYATNHYKE 321 Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSK 304 DL ++ LGH + T IYTN+N++ Sbjct: 322 NKDLVLLRDQLGHTSVEVTSIYTNINNE 349 >gi|332654353|ref|ZP_08420097.1| transposase [Ruminococcaceae bacterium D16] gi|332517439|gb|EGJ47044.1| transposase [Ruminococcaceae bacterium D16] Length = 399 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/219 (24%), Positives = 92/219 (42%), Gaps = 46/219 (21%) Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 A+ KQ L+ + H +++ DA +Y+L+ GLRISE LT I + Sbjct: 191 AITRKQQRDLL-KFIQEDKHFSRYYDA-----IYILFHTGLRISEFCGLTVSEIEFGEMR 244 Query: 188 LRI---------------QGKGDK-IRIVPLL----------------PSVRKAILEYYD 215 +++ + K DK IR VP+ P V + Y Sbjct: 245 IKVDHQLQRTAQMQYVIEEPKTDKGIRYVPMTEAVAACFRRIIANRKTPKVEPMVEGYAG 304 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275 D N +P+ + + + Q+Y R R + +P T H RH+F +++ Sbjct: 305 FLFLDKN---DMPMV-ALHWEKYLEHIIQKYNRIYR--IQMP-KVTPHVCRHTFCSNMAK 357 Query: 276 NGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313 +G + +++Q I+GH +S T YT+VN + + + I Sbjct: 358 SGMNPKTLQYIMGHADISVTLNTYTHVNFDDAKEEVYRI 396 >gi|188579610|ref|YP_001923055.1| integrase family protein [Methylobacterium populi BJ001] gi|179343108|gb|ACB78520.1| integrase family protein [Methylobacterium populi BJ001] Length = 229 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 71/149 (47%), Gaps = 20/149 (13%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG----KGDKIRIVPLLPSVRKAILEY- 213 L L Y G R+SEAL+LT ++ + + + +R VP+ P AIL++ Sbjct: 82 CLILAY-TGCRLSEALALTHADLDQAGGIVSLHCLKKRRTGIVRDVPV-PEGVMAILDFV 139 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-HTLRHSFATH 272 +DL P + L P R +QR I+ + R G+ S + LRH+F H Sbjct: 140 HDLEPSERRL---WPFKRST--------AWQR-IKTVMREAGVSASAASPKGLRHAFGVH 187 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 L +G L +Q LGH LSTT IY +V Sbjct: 188 ALRSGVPLTLLQRWLGHASLSTTAIYADV 216 >gi|54027895|ref|YP_122135.1| putative recombinase [Nocardia farcinica IFM 10152] gi|54019403|dbj|BAD60771.1| putative recombinase [Nocardia farcinica IFM 10152] Length = 358 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 79/169 (46%), Gaps = 24/169 (14%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQ-GKG-----DKIRIVPLLP 204 ARN + L GLR++EA L +I + L ++ GKG + R+VPL+ Sbjct: 166 ARNYMVARLAADVGLRVNEACMLDLDDIRWELGRFGKLNVRHGKGAFRSGPRQRLVPLIN 225 Query: 205 SVRKAILEYYD--LCPFDLNLNI-QLPLFRGIRGKPLNPGVFQRYIRQ-LRRYLG----- 255 A+ + + FD + + + PLF R + + G R R +RR LG Sbjct: 226 GADTALTWFVEDVWAQFDADETLPRAPLFPSERRRAGSSGT--RVTRDVIRRALGGAVDR 283 Query: 256 -LPLST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 LP + T H LRH A+ L G D+ +IQ +LGH ++TT Y + Sbjct: 284 HLPTWSGRLTPHVLRHYCASQLYRTGVDILAIQELLGHSWITTTMRYVH 332 >gi|326382372|ref|ZP_08204064.1| phage integrase family protein [Gordonia neofelifaecis NRRL B-59395] gi|326199102|gb|EGD56284.1| phage integrase family protein [Gordonia neofelifaecis NRRL B-59395] Length = 368 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 3/55 (5%) Query: 247 IRQLRRY---LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 +R++RRY +G+P H+ R S+ATHLL + D R +Q +GH STT IY Sbjct: 281 LRRVRRYCTDVGIPEGVDLHSFRRSYATHLLEDDWDPRFVQDQMGHEYASTTGIY 335 >gi|218263977|ref|ZP_03477908.1| hypothetical protein PRABACTJOHN_03598 [Parabacteroides johnsonii DSM 18315] gi|218222388|gb|EEC95038.1| hypothetical protein PRABACTJOHN_03598 [Parabacteroides johnsonii DSM 18315] Length = 389 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 14/144 (9%) Query: 162 LLYGC--GLRISEALSLTPQNIMD--DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 L+ C GLR+S+ SLT I+ D TL I+ + K + + +P ++A+ Y Sbjct: 238 FLFSCFTGLRLSDVRSLTWGKIIKAPDGHTLYIRVRMQKTQKLLNVPLSKEALDCLY--- 294 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 P D + P+F P +R + + + + T H RHSFAT +L+ G Sbjct: 295 PKD---DADEPIF----TLPAGASNIERNLTKWMQNAKITKHITYHCSRHSFATMMLTLG 347 Query: 278 GDLRSIQSILGHFRLSTTQIYTNV 301 D+ + +LGH ++TT IY + Sbjct: 348 ADIYTTSKLLGHANVNTTSIYAKI 371 >gi|210619629|ref|ZP_03292053.1| hypothetical protein CLONEX_04294 [Clostridium nexile DSM 1787] gi|210148832|gb|EEA79841.1| hypothetical protein CLONEX_04294 [Clostridium nexile DSM 1787] Length = 345 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 68/294 (23%), Positives = 120/294 (40%), Gaps = 39/294 (13%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTE----EKITIQTIRQLSYTEIRAFISKRRTQKIG 84 RGLSK T+ SY+ T LI + + ++IT + + ++ +++ R + Sbjct: 26 RGLSKNTINSYKT-TFTLLIKYMYSVKNTKADEITFDCLDVNTLSDFMSWLENERKCSVT 84 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--L 142 R+ + L+ + SF +Y + S + S P+ +++ D V L Sbjct: 85 TRNQR--LAALYSFSEYAQNYDFDAASTFRSAVLRIPSKKAPK---KRRVGFTTDEVKIL 139 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ--NIMDDQSTLRIQGKGDKIRIV 200 L + R+ +L +Y G R E LT + N +T+ I GKG K R + Sbjct: 140 LALPDQKSETGLRDMVLLSFMYATGTRAQEVCDLTVKSVNFRSTGTTIDIVGKGSKARRI 199 Query: 201 ----PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-RRYLG 255 P +RK I + I+ R I + + + ++ ++Y+ Sbjct: 200 RIPDPCASMLRKYIR----------HRRIETEPDRHIFSSQTHEHMTISCVEEIYKKYIK 249 Query: 256 LPLSTTA----------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 L T H++RH+ H+L G + I++ LGH + TTQIYT Sbjct: 250 LAKEKTPNLFKEEHYSPHSMRHTTGQHMLEAGVPIMVIKAFLGHASVQTTQIYT 303 >gi|133723146|gb|ABO37819.1| XerC [Lactococcus garvieae] Length = 353 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 63/291 (21%), Positives = 118/291 (40%), Gaps = 38/291 (13%) Query: 58 ITIQTIRQLSYTEIRAFI-----SKRRTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTE 110 I + T+ L+ ++I +I R+ K G S+KR+L+ + S KYL ++ Sbjct: 66 IDLDTLENLARSDIEGYILYLREKPRQNNKSGLTQNSVKRTLAALSSLFKYLTEQAEGIN 125 Query: 111 SNILNMRNLKKSNSL--------PRALNEKQALTLVDNV-----LLHTSHETKWID---- 153 RN+ K + RA N K L L D + +E + Sbjct: 126 GEPYFYRNVMKKVQIQKNRETLASRAENIKGKLFLGDETQGFLDFIDNEYEKSLSNRALS 185 Query: 154 ------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR 207 R+ AI+ L+ G+R+SEA+++ ++ + + KG K V + Sbjct: 186 SFNKNKERDLAIIALMLASGVRLSEAVNINISDLNMKTLVVEVTRKGGKRDAVNIAKFAE 245 Query: 208 KAILEYYDL-----CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA 262 +L Y ++ P N L ++RG + ++ ++ + + + + T Sbjct: 246 LYLLNYLEIREQRYKPEKNNKAFFLSIYRG-QASRIDGSSIEKLVSKYSQ--AFKVRITP 302 Query: 263 HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 H LRH+ AT L + + LGH T +YT++ S+ + + E+ Sbjct: 303 HKLRHTLATRLYAQTNSQVLVSHQLGHSSTQVTDLYTHIISQEQKNALDEL 353 >gi|309795404|ref|ZP_07689822.1| site-specific recombinase, phage integrase family [Escherichia coli MS 145-7] gi|308121054|gb|EFO58316.1| site-specific recombinase, phage integrase family [Escherichia coli MS 145-7] Length = 369 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/187 (24%), Positives = 79/187 (42%), Gaps = 28/187 (14%) Query: 124 SLPRALNEKQALTLVDNVLLHTSHE--TKWID--ARNSAILYLLY----GCGLRISEALS 175 S P L + T+ + + +HE + +D R IL L+ G R EA++ Sbjct: 180 SYPNPLENMRKFTIAEKEMAWLTHEQIVELLDDCKRQDPILALVVKICLSTGARWREAIN 239 Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235 LT + + T ++ KG K R +P+ + + I+ L F+ Sbjct: 240 LTRSQVTKYRITF-VRTKGKKNRSIPISKELYEEIMA---LDGFNF-------------- 281 Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 FQ + + LP H LRH+FA H + +GG++ ++Q ILGH + T Sbjct: 282 --FTDCYFQFLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMT 339 Query: 296 QIYTNVN 302 Y +++ Sbjct: 340 MRYAHLS 346 >gi|293420941|ref|ZP_06661375.1| hypothetical protein ECCG_04310 [Escherichia coli B088] gi|291324811|gb|EFE64227.1| hypothetical protein ECCG_04310 [Escherichia coli B088] Length = 115 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 44 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 87 >gi|225352818|ref|ZP_03743841.1| hypothetical protein BIFPSEUDO_04450 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156425|gb|EEG69994.1| hypothetical protein BIFPSEUDO_04450 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 308 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 68/152 (44%), Gaps = 12/152 (7%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVR 207 +A ++ L+ GLR SEAL LTP + TL + D +P SVR Sbjct: 135 EASWDWLILLIAKTGLRFSEALGLTPDDFDFAHQTLSVSKTWDYKNGGGFVPTKNESSVR 194 Query: 208 KAILEY---YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 K L++ L NL P+F + GK N R + + +P+ + H Sbjct: 195 KVQLDWQLIMQLSGLLKNLPHDKPIF--VHGKVYNSTANDVLARHCKN-VDVPV-ISIHG 250 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 LRH+ A+ LL G + S+ LGH ++TTQ Sbjct: 251 LRHTHASLLLFAGVSIASVSRRLGHASMTTTQ 282 >gi|225389817|ref|ZP_03759541.1| hypothetical protein CLOSTASPAR_03565 [Clostridium asparagiforme DSM 15981] gi|225044127|gb|EEG54373.1| hypothetical protein CLOSTASPAR_03565 [Clostridium asparagiforme DSM 15981] Length = 409 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 78/184 (42%), Gaps = 41/184 (22%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLR---------IQGKG----------DKIRI 199 ++ +L G GLR+ E LT ++ + +T+ I G+ R Sbjct: 207 VMVVLLGTGLRVGECTGLTKNDVDLENNTISVNHNLIYRVIDGEAGFHITTPKTASGTRT 266 Query: 200 VPLL-PSVR---KAILEYYD-LCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLR-- 251 +P+L P V +A++E D L P DL +N LFR G L+ R I ++ Sbjct: 267 IPILYPQVAEQLRALIEVMDALYPEDLVMNGYHGFLFRNRSGYFLSAHNINRAIERISIA 326 Query: 252 -------------RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QI 297 R L + H LRH+F T L D++ IQ ++GH STT I Sbjct: 327 YNAEEMDQAELEDREPNLLPHFSVHNLRHTFCTRLCEKTNDIKFIQQVMGHADFSTTMDI 386 Query: 298 YTNV 301 YT++ Sbjct: 387 YTHI 390 >gi|212716989|ref|ZP_03325117.1| hypothetical protein BIFCAT_01935 [Bifidobacterium catenulatum DSM 16992] gi|212660274|gb|EEB20849.1| hypothetical protein BIFCAT_01935 [Bifidobacterium catenulatum DSM 16992] Length = 324 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 68/152 (44%), Gaps = 12/152 (7%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP-----SVR 207 +A ++ L+ GLR SEAL LTP + TL + D +P SVR Sbjct: 151 EASWDWLILLIAKTGLRFSEALGLTPDDFDFAHQTLSVSKTWDYKNGGGFVPTKNESSVR 210 Query: 208 KAILEY---YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 K L++ L NL P+F + GK N R + + +P+ + H Sbjct: 211 KVQLDWQLIMQLSGLLKNLPHDKPIF--VHGKVYNSTANDVLARHCKN-VDVPV-ISIHG 266 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 LRH+ A+ LL G + S+ LGH ++TTQ Sbjct: 267 LRHTHASLLLFAGVSIASVSRRLGHASMTTTQ 298 >gi|3152920|gb|AAC17173.1| unknown [Streptococcus mutans] Length = 356 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 70/300 (23%), Positives = 119/300 (39%), Gaps = 60/300 (20%) Query: 58 ITIQTIRQLSYTEIRAFI----------SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI 107 I ++T+ LS ++ +FI +K + Q + ++ R+LS + S KYL + Sbjct: 66 IPLETLEHLSKKDMESFILYLRERTLLNTKNKRQGVSQTTINRTLSALSSLYKYLTEEVE 125 Query: 108 TTESNILNMRNLKKSNSL--------PRALNEKQALTLVDNVL-----LHTSHETKWID- 153 + RN+ K S RA N KQ L L + + + +E K Sbjct: 126 NADGEPYFYRNVMKKVSTKKKKETLAARAENIKQKLFLGNETMEFLEYVDCEYEQKLSKR 185 Query: 154 ---------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 R+ AI+ LL G+R+SEA++L +++ + + + KG K V + Sbjct: 186 ALSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVTRKGGKHDSVNV-A 244 Query: 205 SVRKAILEYY-------------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 K LE Y DL F L +RG+ + ++ ++ + + Sbjct: 245 GFAKPYLENYITIRRGRYKAKKTDLAFF-------LSEYRGVPNR-MDASSIEKMVAKYS 296 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV---NSKNGGD 308 + + T H LRH+ AT L + LGH T +YT++ KN D Sbjct: 297 Q--DFKIRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354 >gi|331681295|ref|ZP_08381932.1| type 1 fimbriae regulatory protein FimE [Escherichia coli H299] gi|331081516|gb|EGI52677.1| type 1 fimbriae regulatory protein FimE [Escherichia coli H299] Length = 198 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 66/158 (41%), Gaps = 2/158 (1%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILE 212 AR+ ++ L Y G+RISE L L Q++ ++ + I+ + V PL R+A+ Sbjct: 26 ARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVER 85 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 + + +F RG L+ R IR G T H LRH+ Sbjct: 86 WTQERANWKGADRTDAIFISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGYE 145 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN-GGDW 309 L G D R IQ LGH + T YT N+ G W Sbjct: 146 LAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLW 183 >gi|302387142|ref|YP_003822964.1| integrase family protein [Clostridium saccharolyticum WM1] gi|302197770|gb|ADL05341.1| integrase family protein [Clostridium saccharolyticum WM1] Length = 327 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 62/152 (40%), Gaps = 18/152 (11%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILEYYDLCPFD 220 LLY CGLR SEA L +N+ D L I G K DK R+VP+ P + Y ++ Sbjct: 149 LLYFCGLRFSEAQQLLVKNVDLDNGILSIYGSKFDKDRLVPMSPEITNICRAYSEVVHVH 208 Query: 221 LNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-----HTLRHSFATHLL 274 + + I LP + F R L G+ H LRH+FA H L Sbjct: 209 SSADAIYLP---NVHNDVYEKRCFYNVYRDLLWMAGISHGGRGNGPRLHDLRHTFAVHCL 265 Query: 275 ----SNGGDLRS----IQSILGHFRLSTTQIY 298 D+ + + S LGH L T Y Sbjct: 266 RKWVEEDADITALLPYLSSYLGHKGLQETAYY 297 >gi|60680662|ref|YP_210806.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343] gi|60492096|emb|CAH06859.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343] Length = 371 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 70/148 (47%), Gaps = 18/148 (12%) Query: 163 LYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220 L+ C LRIS+ LSL ++I+D + G K V ++ KA D+ P Sbjct: 223 LFSCMTSLRISDILSLCWEDIVDYSA-------GGKC--VHIITQKNKA----EDIIPIS 269 Query: 221 ---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 L L +G+ K L Q +++ R G+ + T H+ R +FAT + G Sbjct: 270 EEALGLIGYSSEKKGLVFKGLMRSWTQIPMKEWIRSAGITKNITFHSYRRTFATLQAAAG 329 Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKN 305 D+R+IQSI+ H ++TTQ Y V N Sbjct: 330 TDIRTIQSIMAHKSITTTQRYIKVVDAN 357 >gi|301309519|ref|ZP_07215461.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] gi|300832608|gb|EFK63236.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] Length = 210 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 14/131 (10%) Query: 173 ALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL-P 228 LSL ++ + D T+ I QGKG K + V + + EY F +N I Sbjct: 61 VLSLIDESSVIDGKTMDIHSVQGKGVKCQGVSF--NFKIGCGEYD---TFYVNNTIDFNA 115 Query: 229 LFRGI----RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284 +F G+ P P ++ Y L L +P H LRHSFAT + G D +++ Sbjct: 116 MFDGVLIGNDEHPTEPCTYRNYYNSLMAKLDIP-KLKYHGLRHSFATRCIEAGCDYKTVS 174 Query: 285 SILGHFRLSTT 295 +LGH +STT Sbjct: 175 VLLGHSNISTT 185 >gi|260593520|ref|ZP_05858978.1| putative integrase [Prevotella veroralis F0319] gi|260534508|gb|EEX17125.1| putative integrase [Prevotella veroralis F0319] Length = 385 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 81/187 (43%), Gaps = 34/187 (18%) Query: 131 EKQALTLVD--NVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQS 186 E+ +LT+ D +L + H + N L L GC GL S+ L MDD Sbjct: 165 ERNSLTVDDLQKLLAYRPHRS----TDNHCRLIFLLGCFTGLAFSDLKKLR----MDDVY 216 Query: 187 TLR--------IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPL 238 T + K IVPLLP + + D L LFR P Sbjct: 217 TFGDGRRYISLCRTKTQNRSIVPLLPIAEEILTIVSDGRKEGL-------LFREF---PT 266 Query: 239 NPGVFQRYIRQLRRYLGLPLSTTA--HTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTT 295 N F R IR + GLP T A HT RH+FAT + L NG + ++ +LGH +STT Sbjct: 267 N-SHFNRKIRDIIIKAGLPPHTEANSHTARHTFATTICLENGLPIETVSKMLGHRFISTT 325 Query: 296 QIYTNVN 302 ++Y V+ Sbjct: 326 ELYAKVS 332 >gi|170576371|ref|XP_001893602.1| resolvase [Brugia malayi] gi|37496517|emb|CAD50592.1| resolvase [Cloning vector pUvBBAC] gi|158600296|gb|EDP37566.1| resolvase [Brugia malayi] gi|222834586|gb|EEE73049.1| predicted protein [Populus trichocarpa] gi|296775705|gb|ADH42981.1| Integrase [uncultured SAR11 cluster alpha proteobacterium H17925_38M03] gi|312843168|gb|ADR02804.1| ResD [Shuttle vector pMycoFos] Length = 115 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 44 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 87 >gi|315180749|gb|ADT87663.1| Integrase [Vibrio furnissii NCTC 11218] Length = 352 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 21/143 (14%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 ++ L G R E SLT + + T Q KG K R VP+ P + + I + Sbjct: 202 VIKLCLATGGRFRETASLTGSQLSQYKVTF-TQTKGKKNRSVPISPELYEEIYKPGSGPL 260 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278 F + + ++R I R I +L++ AH LRH+FA++ + NGG Sbjct: 261 FGIGYST---VYRFI----------SRNIPRLKQ-------QAAHVLRHTFASYYMMNGG 300 Query: 279 DLRSIQSILGHFRLSTTQIYTNV 301 ++ ++Q ILGH + T Y ++ Sbjct: 301 NIIALQRILGHADIKQTMRYAHL 323 >gi|221215737|ref|ZP_03588698.1| phage integrase family protein [Burkholderia multivorans CGD1] gi|221164439|gb|EED96924.1| phage integrase family protein [Burkholderia multivorans CGD1] Length = 575 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 78/320 (24%), Positives = 128/320 (40%), Gaps = 70/320 (21%) Query: 27 IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 +ERG LS LT + D + FL T + I +R + R F + + Sbjct: 258 VERGRALSSLTTE----DALAYRAFLRRPTPHERWIGPVRPRGAPDWRPF-----SGALS 308 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNSLPRALNEKQALTLVDNVL 142 RS +LS + + ++L +++ + + +R+ + ++ AL+ A T + +L Sbjct: 309 ARSAAYALSVLGAMFRWLIEQRYVLANPFAGVKVRDTRGAS----ALDTSHAFTEGEWLL 364 Query: 143 LHT---SHETKWIDA-----------RNSAILYLLYGCGLRISEALSLTPQNIMDD---Q 185 + T E + D R IL Y GLR SE + T +I D Sbjct: 365 VRTIADGLEFRKTDVPAAAWTPAAAQRLRFILDFGYATGLRASELVGATLGDIDTDAHGD 424 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP----- 240 + L++ GKG K V L P R A+ Y + +LP+ +R +P P Sbjct: 425 AWLKVVGKGSKAARVALPPLARTALDRYL--------VARRLPVT-PVRWRPDTPLIPRL 475 Query: 241 --------------GVFQRYIRQLRRYLGL--PL------STTAHTLRHSFATHLLSNGG 278 V QR+ Q + P + H +RH+ ATH L+ G Sbjct: 476 TEDGAAPITSVRLWKVMQRFFVQTADLVEADNPALAQKLRQASPHWMRHTHATHALARGA 535 Query: 279 DLRSIQSILGHFRLSTTQIY 298 +L +++ L H +STT IY Sbjct: 536 ELTTVRDNLRHASISTTSIY 555 >gi|50953961|ref|YP_061249.1| phage-related integrase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50954189|ref|YP_061477.1| phage-related integrase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950443|gb|AAT88144.1| phage-related integrase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950671|gb|AAT88372.1| phage-related integrase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 434 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 59/142 (41%), Gaps = 28/142 (19%) Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLC-----PFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 I+ K K R VPL+P V + EY + P+ L L+R G+P P Q Sbjct: 284 IRPKLGKSRTVPLIPPVVAVLHEYLEATKDRPNPYGL-------LWRHEDGRPYLPHEDQ 336 Query: 245 RYIRQL----------------RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288 + R L R G P T H RH+ AT L+ G D + + I+G Sbjct: 337 QLWRDLLFRAGVINQEQTKPPKDRTPGTPGIPTTHWARHTTATALMELGVDAKIVGEIVG 396 Query: 289 HFRLSTTQIYTNVNSKNGGDWM 310 H TT+ Y +V+S D M Sbjct: 397 HVDEKTTRRYQHVSSPTARDAM 418 >gi|332885867|gb|EGK06113.1| hypothetical protein HMPREF9456_02377 [Dysgonomonas mossii DSM 22836] Length = 406 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 20/141 (14%) Query: 167 GLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYDLCPFDLN 222 GL + +L PQNI + L I+ K ++ +PL P + + IL Y+ Sbjct: 251 GLAFVDVHNLYPQNIGKTAEGKLYIRSSRAKTKVEAFIPLHP-IAEQILMLYN------T 303 Query: 223 LNIQLPLFRGIRGKPLNPGVFQRY--IRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDL 280 ++ P+F PL P Q + + ++ LG+ + + H RHSF T +LS G + Sbjct: 304 IDNTAPIF------PL-PSRDQIWFEVHEIGFALGIKENLSYHMSRHSFGTLMLSAGIPI 356 Query: 281 RSIQSILGHFRLSTTQIYTNV 301 SI ++GH +S+TQIY+ V Sbjct: 357 ESISKMMGHTNISSTQIYSKV 377 >gi|265763422|ref|ZP_06091990.1| integrase [Bacteroides sp. 2_1_16] gi|263256030|gb|EEZ27376.1| integrase [Bacteroides sp. 2_1_16] Length = 372 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 68/146 (46%), Gaps = 14/146 (9%) Query: 163 LYGC--GLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219 L+ C LRIS+ L+L + I+D + + + K + ++P +A Sbjct: 224 LFSCLTSLRISDILTLRWEEIVDFAAGGKCVHTVTQKTKTEDIIPISDEA---------- 273 Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279 L L P G+ K L Q +++ R G+ + T H+ R +FAT + G D Sbjct: 274 -LQLIGYSPEKTGLVFKGLKRCWTQYPMKEWIRAAGITKNITFHSYRRTFATLQAAAGTD 332 Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKN 305 +R+IQSI+ H ++TTQ Y V N Sbjct: 333 IRTIQSIMAHKSITTTQRYMKVVDSN 358 >gi|253578301|ref|ZP_04855573.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850619|gb|EES78577.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 399 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/219 (24%), Positives = 92/219 (42%), Gaps = 46/219 (21%) Query: 128 ALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 A+ KQ L+ + H +++ DA +Y+L+ GLRISE LT I + Sbjct: 191 AITRKQQRDLL-KFIQEDKHFSRYYDA-----IYILFHTGLRISEFCGLTVSEIEFGEMR 244 Query: 188 LRI---------------QGKGDK-IRIVPLL----------------PSVRKAILEYYD 215 +++ + K DK IR VP+ P V + Y Sbjct: 245 IKVDHQLQRTAQMQYVIEEPKTDKGIRYVPMTEAVAACFRRIIANRKTPKVEPMVEGYAG 304 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275 D N +P+ + + + Q+Y R R + +P T H RH+F +++ Sbjct: 305 FLFLDKN---DMPMV-ALHWEKYLEHIIQKYNRIYR--IQMP-KVTPHVCRHTFCSNMAK 357 Query: 276 NGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313 +G + +++Q I+GH +S T YT+VN + + + I Sbjct: 358 SGMNPKTLQYIMGHADISVTLNTYTHVNFDDAKEEVYRI 396 >gi|229547242|ref|ZP_04435967.1| bacteriophage integrase [Enterococcus faecalis TX1322] gi|256854683|ref|ZP_05560047.1| conserved hypothetical protein [Enterococcus faecalis T8] gi|229307639|gb|EEN73626.1| bacteriophage integrase [Enterococcus faecalis TX1322] gi|256710243|gb|EEU25287.1| conserved hypothetical protein [Enterococcus faecalis T8] gi|315030632|gb|EFT42564.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX4000] Length = 309 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 13/147 (8%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV------RKAILE 212 + L+ GLR SEAL+LTP++ + + I+ + S RK ++ Sbjct: 141 FILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKNPTGFFQSTKNESSKRKVQID 200 Query: 213 YYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 + F N+ P+F ++G+ N + R ++ L + +P+ T H+LRH+ Sbjct: 201 WQTAMQFSQLIRNMPPMEPIF--VKGRVFNSTINNR-LKVLCKRAQIPV-ITVHSLRHTH 256 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ 296 A+ LL G + S+ + LGH ++TTQ Sbjct: 257 ASLLLFAGVSIASVATRLGHSSMTTTQ 283 >gi|171057458|ref|YP_001789807.1| integrase family protein [Leptothrix cholodnii SP-6] gi|170774903|gb|ACB33042.1| integrase family protein [Leptothrix cholodnii SP-6] Length = 326 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 62/237 (26%), Positives = 102/237 (43%), Gaps = 32/237 (13%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 + R L +++F+++L++ + TE + P +E++ ++D LL ++ Sbjct: 70 TWARRLKRLRTFVRWLQQFEPDTEVPDDTVFGRMPERKAPHIYSEQE---IID--LLTSA 124 Query: 147 HETKWIDARNSAILYLLYG----CGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVP 201 + + L+G GLRISEALSL ++ L IQ K K R VP Sbjct: 125 RRLGPASSLRGVVFETLFGLIASTGLRISEALSLKNADVDLKTGMLSIQLTKFGKSRQVP 184 Query: 202 LLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGK----PLNPGVFQRYIRQLRRYL 254 + PS +A+ +Y DL + F G RG+ PL R +LRR L Sbjct: 185 VHPSTLEALRQYRLRRDLA--GESYGDDTAFFVGSRGRLHGRPLGDRQVHRVFGELRRQL 242 Query: 255 GLP-----LSTTAHTLRHSFATHLL----SNGGDLR----SIQSILGHFRLSTTQIY 298 G P + H LRH+F + + G D+ S+ + +GH ++ T Y Sbjct: 243 GWPNRGSHHAARIHDLRHTFVVRRIVQWYAQGVDIDQAMLSLSTYIGHAMVTNTYWY 299 >gi|170024532|ref|YP_001721037.1| integrase family protein [Yersinia pseudotuberculosis YPIII] gi|169751066|gb|ACA68584.1| integrase family protein [Yersinia pseudotuberculosis YPIII] Length = 335 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 23/143 (16%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 ++ + G R SEA L+ +M + T Q K + R VP+ + YD Sbjct: 194 VVRICLATGARWSEAQGLSQSQLMPSRVTF-TQTKSKRNRTVPISKRL-------YD--- 242 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR-YLGLPLSTTAHTLRHSFATHLLSNG 277 +LP RG + + + L+R + LP H LRH+FA+H + G Sbjct: 243 -------RLPKRRG----SMFSSCYDAFKHALKRSAIELPKGQRTHVLRHTFASHFMMGG 291 Query: 278 GDLRSIQSILGHFRLSTTQIYTN 300 G++ +Q ILGH + T Y + Sbjct: 292 GNILVLQQILGHSTILMTMRYAH 314 >gi|296455012|ref|YP_003662156.1| phage integrase family protein [Bifidobacterium longum subsp. longum JDM301] gi|296184444|gb|ADH01326.1| phage integrase family protein [Bifidobacterium longum subsp. longum JDM301] Length = 351 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 70/301 (23%), Positives = 118/301 (39%), Gaps = 31/301 (10%) Query: 19 QNWLQN-LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 ++WL + L RG S T+++Y ++ +L + + + ++ Sbjct: 21 RDWLHHWLPKVRGSSPKTVEAYRIGLESYVRWLETTEGTQRSHIGFGHFDRARLGRWVEW 80 Query: 78 RRTQK-IGDRSLKRSLSGIKSFLKY--LKKRKITTESNILNMRNLKKSNSLP-RALNEKQ 133 RT++ DR++ ++ ++ FL + L+ +T N +K P L E+ Sbjct: 81 MRTERGYSDRTIMPRMTTMRVFLDHAGLEHPALTALGNDAAGIRVKPPAREPVDHLGEEH 140 Query: 134 ALTLVDNVLLHTSHETKWI--DA---RNSAILYLLYGCGLRISEALSLTPQNI-MDDQST 187 L+ T W DA RN + L+Y RI E +LT ++ MD + Sbjct: 141 TKALL----------TAWGTGDAKSRRNRMLPILMYDTAARIGELAALTIADVGMDKPAR 190 Query: 188 LRIQGKGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRGKPLNPGVFQR- 245 + + GK K R+VPL R + Y + P + PLF R + P R Sbjct: 191 VTLTGKRGKSRVVPLGERTRTHLAAYLEEFHPGPSTRDGDRPLFHSTRNGAIQPLSVDRI 250 Query: 246 ------YIRQLRRYL--GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + RR +P H +R + A L G L I +LGH +STT Sbjct: 251 DEIPKTAAARARRGTCPSMPERVHCHLIRRTRAMDLYQQGVPLPLIMQLLGHESMSTTSA 310 Query: 298 Y 298 + Sbjct: 311 F 311 >gi|237719819|ref|ZP_04550300.1| integrase [Bacteroides sp. 2_2_4] gi|229451088|gb|EEO56879.1| integrase [Bacteroides sp. 2_2_4] gi|295086377|emb|CBK67900.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 389 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 5/75 (6%) Query: 232 GIRGKPLNPGV----FQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSI 286 G + +PL P V RY++++ + G+ T H RH+FAT + L + L ++ + Sbjct: 284 GKKNQPLFPYVSNQIMNRYLKKVAKLAGVEDRVTYHVARHTFATTITLQHEIPLETVSKM 343 Query: 287 LGHFRLSTTQIYTNV 301 LGH +++TTQ+Y V Sbjct: 344 LGHTKITTTQVYARV 358 >gi|237724706|ref|ZP_04555187.1| integrase [Bacteroides sp. D4] gi|229436901|gb|EEO46978.1| integrase [Bacteroides dorei 5_1_36/D4] Length = 371 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 20/149 (13%) Query: 163 LYGC--GLRISEALSLTPQNIMD----DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 L+ C LR+S+ L+L + I+D + I K I+P+ K ++EY Sbjct: 223 LFSCLTSLRLSDILTLCWEEIVDFAAGGKCVHTITQKTKTEDIIPISDEALK-LIEY--- 278 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 P +G+ K L Q +++ R G+ + T H+ R +FAT + Sbjct: 279 ----------SPEKKGLVFKGLKRCWTQVPMKEWIRSAGITKNITFHSYRRTFATLQGAA 328 Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 G D+R+IQS++ H ++TTQ Y V N Sbjct: 329 GTDIRTIQSMMAHKSITTTQRYMKVVDSN 357 >gi|150006223|ref|YP_001300967.1| transposase [Bacteroides vulgatus ATCC 8482] gi|149934647|gb|ABR41345.1| transposase [Bacteroides vulgatus ATCC 8482] Length = 412 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 57/192 (29%), Positives = 84/192 (43%), Gaps = 24/192 (12%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 KK N P+AL + L + D L K + L+ Y G ++ +S+T + Sbjct: 218 KKENP-PKALTREDFLKIRD---LEIPERRKSLALTRDLFLFACY-TGTAYADTVSITEE 272 Query: 180 NIMDDQST---LRIQGKGDKIRI-VPLLPSVRKAILEYYDLCPFDLNLNIQLPL--FRGI 233 N+ D+ L+ K +K+ V LLP A+LE Y D LP FR + Sbjct: 273 NLFRDEEGSLWLKYHRKKNKMLARVKLLPEAL-AMLEKYK----DPTRPTLLPPQEFRVL 327 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRL 292 RG + +R L G+ + H RHSFA+ + L G + +I +LGH + Sbjct: 328 RGN-------MKSLRVLSGISGISMDLVYHVGRHSFASLVTLEEGVPIETISRMLGHSNI 380 Query: 293 STTQIYTNVNSK 304 TTQIY V K Sbjct: 381 QTTQIYARVTPK 392 >gi|29347677|ref|NP_811180.1| integrase protein [Bacteroides thetaiotaomicron VPI-5482] gi|29339578|gb|AAO77374.1| integrase protein [Bacteroides thetaiotaomicron VPI-5482] Length = 396 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 70/164 (42%), Gaps = 48/164 (29%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 A L+ Y GLR S+ ++LT NI++ Q T I SV+ I Sbjct: 238 AFLFCCYA-GLRYSDFINLTAANIVELHQETWLI------------YKSVKTGI------ 278 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-------------- 262 +++LPL+ GK L V + Y L + L ++ Sbjct: 279 -------DVRLPLYLLFEGKGLR--VLETYKDDLNGFFKLKDNSNVNKDLNALAKLAEID 329 Query: 263 -----HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 HT RH+ AT L+ +G ++ ++Q +LGH + TTQ+Y N+ Sbjct: 330 KRISFHTARHTNATLLIYSGANITTVQKLLGHKSVKTTQVYANI 373 >gi|299142622|ref|ZP_07035752.1| integrase [Prevotella oris C735] gi|298575837|gb|EFI47713.1| integrase [Prevotella oris C735] Length = 349 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 82/185 (44%), Gaps = 31/185 (16%) Query: 148 ETKWIDARNSAILYLLYGC---GLRISEALSLTPQNIM---DDQSTLRIQ-GKGDKIRIV 200 +T+ ID + + L C GL + L P++I+ D +RI+ K D I+ Sbjct: 162 QTRIIDKQFERVRQLFLFCAFTGLARVDMQRLKPKHIIRNADGTEEIRIKRQKTDVEAII 221 Query: 201 PLLPSVRKAILEYY------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 PLLP + K IL Y D F +L I+ F + N G R + L Sbjct: 222 PLLP-IAKQILSLYIKDKEADELIFP-SLTIRKASFACV-----NIGQICRIEKGL---- 270 Query: 255 GLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 T H RH+F+T + LSNG + ++ ILGH + TTQIY + + M + Sbjct: 271 ------TFHMARHTFSTTICLSNGISMETLSKILGHSNIGTTQIYGKITDHKIQEDMTAL 324 Query: 314 YDQTH 318 D+ H Sbjct: 325 TDREH 329 >gi|282879691|ref|ZP_06288421.1| site-specific recombinase, phage integrase family [Prevotella timonensis CRIS 5C-B1] gi|281306360|gb|EFA98390.1| site-specific recombinase, phage integrase family [Prevotella timonensis CRIS 5C-B1] Length = 409 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%) Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYT 299 +Q Y++ LR G+P T HT RH+FAT + L G + ++ +LGH +S T+ Y Sbjct: 325 ATYQSYLKALRLRAGIPFPFTTHTARHTFATLITLEQGVPIETVSKMLGHSYVSMTERYA 384 Query: 300 NVN 302 V Sbjct: 385 KVT 387 >gi|167762059|ref|ZP_02434186.1| hypothetical protein BACSTE_00409 [Bacteroides stercoris ATCC 43183] gi|167700018|gb|EDS16597.1| hypothetical protein BACSTE_00409 [Bacteroides stercoris ATCC 43183] Length = 409 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 9/111 (8%) Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +V L+P V + I +Y + F ++ + P+ G + ++++ G + Sbjct: 291 VVKLIPIVVELIEKYRGVNEFKVSPDRVFPVG--------EIGSMEDSLKRIGEKAGCSV 342 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN-VNSKNGGD 308 + H RH+FAT LS G L ++Q +LGH + +TQ+Y +N K G D Sbjct: 343 RVSPHVGRHTFATLALSKGMPLETLQKVLGHKTIISTQVYAELINPKIGED 393 >gi|154496301|ref|ZP_02034997.1| hypothetical protein BACCAP_00589 [Bacteroides capillosus ATCC 29799] gi|150274384|gb|EDN01461.1| hypothetical protein BACCAP_00589 [Bacteroides capillosus ATCC 29799] Length = 301 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 51/208 (24%), Positives = 85/208 (40%), Gaps = 28/208 (13%) Query: 112 NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171 N L +N + +P+ + + D + L + + R S + L GLR S Sbjct: 84 NELCAKNPMRHVKIPKVQEQCRESFTFDELKLILRYALGYTPLRVSVAVITLLLTGLRRS 143 Query: 172 EALSLTPQNIMDDQSTL-----------RIQGKGDK----IRIVPLLPSVRKAILEYYDL 216 E L L ++ D T+ +++ K +R +PLLP + + Sbjct: 144 ELLGLKWSDLTADTLTVNRSVYLESGKPKVEEHRAKTISSLRTIPLLPELSYKLHTLPKR 203 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQR----YIRQLRRYLGLPLSTTAHTLRHSFATH 272 F +F G +P F R + R LR + H RH+FAT Sbjct: 204 SEF---------IFCSRNGTLWHPRNFSRDYTTFFRHLREAEPDARRLSPHCCRHTFATL 254 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTN 300 L++G D+R++Q++LGH + TT YT+ Sbjct: 255 SLASGADIRTVQALLGHANIKTTSRYTH 282 >gi|126665397|ref|ZP_01736379.1| integrase/recombinase [Marinobacter sp. ELB17] gi|126669107|ref|ZP_01740037.1| integrase/recombinase [Marinobacter sp. ELB17] gi|126626434|gb|EAZ97101.1| integrase/recombinase [Marinobacter sp. ELB17] gi|126630025|gb|EBA00641.1| integrase/recombinase [Marinobacter sp. ELB17] Length = 312 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 15/161 (9%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLC 217 ++ LLYG LR+ EAL LT ++ DQ+ L IQ K K R+VPL + + +Y Sbjct: 133 LILLLYGACLRLGEALRLTMNDVDLDQAILCIQKTKFYKTRLVPLGQDLNLVLKQYALRR 192 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA------HTLRHSFAT 271 P F G L+ + R+LR G+ + +A H LRH+ A Sbjct: 193 NATHCKEATAPFFCFRDGHTLSQSAVRSAFRRLRSQAGVQRNDSARYQPRLHDLRHTGAV 252 Query: 272 HLL----SNGGDLR----SIQSILGHFRLSTTQIYTNVNSK 304 H L +G DL+ + + LGH LS TQ Y + + Sbjct: 253 HRLVFWYRSGADLQRLLPQLATYLGHIDLSATQRYLTMTPE 293 >gi|58337430|ref|YP_194015.1| site-specific tyrosine recombinase XerS [Lactobacillus acidophilus NCFM] gi|58254747|gb|AAV42984.1| phage integrase-recombinase [Lactobacillus acidophilus NCFM] Length = 342 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 6/163 (3%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ AI+ L+ G G+R+SE + Q++ ++ L + KG + VP+ I +Y Sbjct: 173 RDMAIIALILGTGIRVSECAGVDLQDLNLKEAVLDVTRKGGQKDSVPIAEWTLSYIKQYK 232 Query: 215 DLCPFDLNLNIQLPLFRGIR----GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 D+ + + F R + + ++ + + G PL T H LRH+ A Sbjct: 233 DIRTDRYMADQKQTAFFLTRWHNQTRRITANAIEKMVNKYSASFGHPL--TPHKLRHTLA 290 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEI 313 + L D + LG + T +YT+V+ + D + +I Sbjct: 291 SELYEVTKDQVLVAQQLGQKGTTATDLYTHVDQRKQRDALNQI 333 >gi|86141544|ref|ZP_01060090.1| mobilizable transposon, int protein [Leeuwenhoekiella blandensis MED217] gi|85832103|gb|EAQ50558.1| mobilizable transposon, int protein [Leeuwenhoekiella blandensis MED217] Length = 398 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 24/148 (16%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219 L+ C GLR S+ LT + D++ R+ + + A EY L Sbjct: 250 FLFSCLTGLRWSDVNKLTWSEVRDEEEGSRL-----------VFKQKKTAAQEYQYLSDQ 298 Query: 220 DLNL-----NIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 ++ +F+G++ G N + + +R G+ T H+ RH+ A L Sbjct: 299 ARSILGDRKQENARVFQGLKYGAHFNAEILRWCMR-----AGITKHITFHSARHTHAVLL 353 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 L +G D+ ++ ILGH + TTQIY + Sbjct: 354 LEHGADIYTVSKILGHKEIRTTQIYAKI 381 >gi|301022944|ref|ZP_07186759.1| site-specific recombinase, phage integrase family [Escherichia coli MS 69-1] gi|300397285|gb|EFJ80823.1| site-specific recombinase, phage integrase family [Escherichia coli MS 69-1] Length = 331 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/45 (44%), Positives = 28/45 (62%) Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 LP H LRH+FATH + NGG++ ++Q ILGH + T Y + Sbjct: 264 LPDGQAVHVLRHTFATHFIMNGGNIITLQRILGHSNIQQTMTYAH 308 >gi|300727862|ref|ZP_07061241.1| integrase/recombinase, phage integrase family [Prevotella bryantii B14] gi|299774846|gb|EFI71459.1| integrase/recombinase, phage integrase family [Prevotella bryantii B14] Length = 216 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 56/215 (26%), Positives = 90/215 (41%), Gaps = 22/215 (10%) Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDA 154 + SF +L++ +S + + +K ++ ++ + D H S + Sbjct: 10 LSSFFSWLEEENYIVKSPVRRIHKVKVGKTVKETYTDEALEQMRD----HCS------NI 59 Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY 214 R+ A++ LL G+R+ E + L +I + GKGDK R V + K L+ Y Sbjct: 60 RDLALIDLLASTGMRVGELVRLNKNDIDYQNRECIVTGKGDKQRKV-YFDARTKIHLQKY 118 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLN----PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 D N + + L P N GV R +R+L R L +P H R + A Sbjct: 119 VNSRTDTNDALFVSLL-----SPNNRLEISGVEIR-LRRLGRELNIP-KVHPHKFRRTLA 171 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 T + G + +Q +LGH L TT Y VN N Sbjct: 172 TMAIDKGMPIEQVQHLLGHQSLDTTLQYAMVNQNN 206 >gi|255690324|ref|ZP_05413999.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] gi|260624124|gb|EEX46995.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] Length = 130 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 4/66 (6%) Query: 247 IRQLRRYLGLPLSTT----AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 I LR L +P T +T RH+FAT +L+ G DL ++ +LGH + TQ+Y + Sbjct: 55 INVLRFILAIPFFTAFLNITYTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIV 114 Query: 303 SKNGGD 308 +K D Sbjct: 115 NKKKDD 120 >gi|218884315|ref|YP_002428697.1| phage integrase family protein [Desulfurococcus kamchatkensis 1221n] gi|218765931|gb|ACL11330.1| phage integrase family protein [Desulfurococcus kamchatkensis 1221n] Length = 321 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 117/287 (40%), Gaps = 49/287 (17%) Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI--TTESNILNMRNLKKSNSLP-R 127 + F + + ++K LS IK FL ++ + + T +IL RN + N P R Sbjct: 10 VEEFKASLEASGASEETVKAYLSAIKDFLGFIGDKPLRDVTLRDILAWRNDRLRNGFPNR 69 Query: 128 ALNEKQ------------------------ALTLVD------NVLLHTSHETKWIDAR-- 155 +++K+ +T V NVL E + AR Sbjct: 70 KISDKEKWLVTLHYYTLFLKRFFEWLGVNIVVTPVRKPHASINVLSDEEVEKLYNVARTP 129 Query: 156 -NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEY 213 + +L LL GLR E L L +++ +++ K K R V A E Sbjct: 130 LDKLVLRLLVDTGLRSRELLGLRVEDVNFHSRVIKVTSAKYGKERYVV-------ATEET 182 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLN-PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 + + + LN +P G R L G++++ R R P H LRH+FAT Sbjct: 183 FKMLDAWIRLNGLMP---GDRLFNLTYSGLYKKLKRLATRAGIAPERVRPHVLRHTFATR 239 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319 L G L ++Q +LGH + TTQIY +++ ++ E D+ HP Sbjct: 240 ALRRGLSLPALQRLLGHSDIKTTQIYLHLSVEDLKKEYYEKMDK-HP 285 >gi|161522759|ref|YP_001585688.1| integrase family protein [Burkholderia multivorans ATCC 17616] gi|160346312|gb|ABX19396.1| integrase family protein [Burkholderia multivorans ATCC 17616] Length = 274 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 16/85 (18%) Query: 233 IRGKPLNP--------GVFQRYIRQLRRYLGLPLS------TTAHTLRHSFATHLLSNGG 278 + G+ L+P G+F R QL L P + T+ H LRH+FA H L G Sbjct: 57 VTGEALHPDAVRRLFKGIFARAADQL--ALTYPNAAADLRRTSTHWLRHTFANHGLDAGA 114 Query: 279 DLRSIQSILGHFRLSTTQIYTNVNS 303 D+R +Q +L H L TT +YT ++ Sbjct: 115 DIRDMQELLDHASLGTTTLYTKADA 139 >gi|253569681|ref|ZP_04847090.1| transposase [Bacteroides sp. 1_1_6] gi|251840062|gb|EES68144.1| transposase [Bacteroides sp. 1_1_6] Length = 308 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 26/164 (15%) Query: 160 LYLLYGCGLRISE--ALSLTPQNIMDDQSTLR--------IQGKGDKIRIVPLLPSVRKA 209 +Y+ GLRI E AL + N+ D T+ I+G+ +V P + + Sbjct: 133 IYISLSTGLRIGEICALKWSDINVYDGILTVNRTIERIYIIEGERKHTELVINTPKTKNS 192 Query: 210 ILEYYDLCPFDLNLNIQL-PLFRGIRG---------KPLNPGVFQRYIRQLRRYLGLPLS 259 E P + L L PL + I +P P ++ Y ++L L +P Sbjct: 193 CRE----IPINKELLTMLKPLKKVINDDYYILTNDERPTEPRTYRNYYKRLMEKLDIP-K 247 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVN 302 H LRHSFAT + G D +++ +LGH +STT +Y + N Sbjct: 248 LKYHGLRHSFATRCIEVGCDYKTVSVLLGHSNISTTLDLYVHPN 291 >gi|157155436|ref|YP_001462104.1| phage integrase family site specific recombinase [Escherichia coli E24377A] gi|157077466|gb|ABV17174.1| site-specific recombinase, phage integrase family [Escherichia coli E24377A] gi|324113805|gb|EGC07780.1| phage integrase [Escherichia fergusonii B253] Length = 331 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/45 (44%), Positives = 28/45 (62%) Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 LP H LRH+FATH + NGG++ ++Q ILGH + T Y + Sbjct: 264 LPDGQAVHVLRHTFATHFIMNGGNIITLQRILGHSNIQQTMTYAH 308 >gi|117623084|ref|YP_851997.1| integrase [Escherichia coli APEC O1] gi|115512208|gb|ABJ00283.1| Integrase [Escherichia coli APEC O1] Length = 331 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/45 (44%), Positives = 28/45 (62%) Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 LP H LRH+FATH + NGG++ ++Q ILGH + T Y + Sbjct: 264 LPDGQAVHVLRHTFATHFIMNGGNIITLQRILGHSNIQQTMTYAH 308 >gi|170769173|ref|ZP_02903626.1| site-specific recombinase, phage integrase family [Escherichia albertii TW07627] gi|191167584|ref|ZP_03029395.1| site-specific recombinase, phage integrase family [Escherichia coli B7A] gi|300926544|ref|ZP_07142332.1| site-specific recombinase, phage integrase family [Escherichia coli MS 182-1] gi|170121825|gb|EDS90756.1| site-specific recombinase, phage integrase family [Escherichia albertii TW07627] gi|190902345|gb|EDV62083.1| site-specific recombinase, phage integrase family [Escherichia coli B7A] gi|294492327|gb|ADE91083.1| site-specific recombinase, phage integrase family [Escherichia coli IHE3034] gi|300417435|gb|EFK00746.1| site-specific recombinase, phage integrase family [Escherichia coli MS 182-1] gi|315296162|gb|EFU55470.1| site-specific recombinase, phage integrase family [Escherichia coli MS 16-3] gi|324116116|gb|EGC10040.1| phage integrase [Escherichia coli E1167] Length = 331 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/45 (44%), Positives = 28/45 (62%) Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 LP H LRH+FATH + NGG++ ++Q ILGH + T Y + Sbjct: 264 LPDGQAVHVLRHTFATHFIMNGGNIITLQRILGHSNIQQTMTYAH 308 >gi|187922278|ref|YP_001893920.1| integrase family protein [Burkholderia phytofirmans PsJN] gi|187713472|gb|ACD14696.1| integrase family protein [Burkholderia phytofirmans PsJN] Length = 405 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 77/181 (42%), Gaps = 40/181 (22%) Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 + LPR N +TLV V L T +W +A GLRIS+ + Q + Sbjct: 175 DELPRGRNVH--VTLVSMVCLATG--ARWGEAE-----------GLRISQVRNGVIQFV- 218 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV 242 + K K R VP+ S+ K + ++ G+ + Sbjct: 219 --------KTKSSKARAVPISKSLAKGLHAHFRTHG---------------EGERIFGTA 255 Query: 243 FQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + + L+R + LP H LRH+FA+H + NGG++ S+Q LGH L+ T Y ++ Sbjct: 256 WSAFREGLQRAKIVLPKGQLTHVLRHTFASHFMMNGGNILSLQRALGHHSLTMTMRYAHL 315 Query: 302 N 302 + Sbjct: 316 S 316 >gi|255008897|ref|ZP_05281023.1| putative phage integrase/recombinase [Bacteroides fragilis 3_1_12] Length = 368 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/248 (21%), Positives = 104/248 (41%), Gaps = 23/248 (9%) Query: 52 FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES 111 ++T K + +++ R FI +K +++ ++ I+ F K++KK E Sbjct: 125 YHTSMKKYFEYANEVNMDNCRRFIKMLEEEKFAPATIRLRITAIERFSKWMKK---PLEL 181 Query: 112 NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRIS 171 M+ +N++P E + L++ + ++ + + + +L G R+S Sbjct: 182 KRPKMKRKLDTNNVP---TEDEYNRLLEYLKTKSNKDYYFF-------IRVLGTTGARLS 231 Query: 172 EALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231 E L T ++I+ + TL+ GKG+K R +++ + Y C + LF Sbjct: 232 EFLQFTWEDIISGEVTLK--GKGNKYRRFFFQKQLQQEVKAYAKECG-------KTGLFA 282 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHF 290 R P+ + ++ G+ H RH FA L D+ + +LGH Sbjct: 283 VGRFGPMTQRGLSQGMKAWGNCCGIDKKKMHPHAFRHFFAKMFLKKNKDVIQLADLLGHG 342 Query: 291 RLSTTQIY 298 + TT+IY Sbjct: 343 SVDTTRIY 350 >gi|107022780|ref|YP_621107.1| phage integrase [Burkholderia cenocepacia AU 1054] gi|105892969|gb|ABF76134.1| phage integrase [Burkholderia cenocepacia AU 1054] Length = 507 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 78/314 (24%), Positives = 125/314 (39%), Gaps = 62/314 (19%) Query: 27 IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 +ERG LS LT + D + FL T + R E R F T + Sbjct: 196 VERGKALSSLTSE----DATAYRAFLRHPTPRARWVAPARPRPSPEWRPF-----TGALS 246 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNSL--PRALNEKQ---ALTL 137 S+ +LS + + ++L +++ ++ L +R +++ L RA + T+ Sbjct: 247 PDSIAYTLSVLSAMFRWLIEQRYVLANSFAGLRVRGAQRNGELDISRAFTAGEWELVRTI 306 Query: 138 VDNVLLHTSHETKWIDARNSAILYLL---YGCGLRISEALSLTPQNI---MDDQSTLRIQ 191 D L SH W + ++L Y GLR SE + +T I + L + Sbjct: 307 ADG--LERSH--GWTVPAAQRLRFVLDFGYATGLRASELVGVTLGGIETGARGERWLHLT 362 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP---------GV 242 GKG K V L P A+ +Y + LP+ R +P P G+ Sbjct: 363 GKGAKAGKVVLPPLATHALDQYL--------VQRGLPVT-SARWQPDTPLLGHLDAPGGI 413 Query: 243 FQRYIRQ-LRRYL---------------GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSI 286 +R+ LRR+ G T H +RH+ ATH L+NG L +++ Sbjct: 414 TTPRLREVLRRFFHAAADAIEADHPALAGKLRRATPHWMRHTHATHALANGATLTTVRDN 473 Query: 287 LGHFRLSTTQIYTN 300 L H ++TT IY + Sbjct: 474 LRHASITTTSIYLD 487 >gi|49176878|ref|YP_025381.1| putative Tn5504 resolvase [Ralstonia eutropha JMP134] gi|72384260|ref|YP_293613.1| phage integrase [Ralstonia eutropha JMP134] gi|134287694|ref|YP_001109860.1| phage integrase family protein [Burkholderia vietnamiensis G4] gi|134287822|ref|YP_001109987.1| phage integrase family protein [Burkholderia vietnamiensis G4] gi|134288066|ref|YP_001110230.1| phage integrase family protein [Burkholderia vietnamiensis G4] gi|134291498|ref|YP_001115267.1| phage integrase family protein [Burkholderia vietnamiensis G4] gi|296163802|ref|ZP_06846493.1| integrase family protein [Burkholderia sp. Ch1-1] gi|39777458|gb|AAR31033.1| putative Tn5504 resolvase [Ralstonia eutropha JMP134] gi|72123613|gb|AAZ65756.1| phage integrase [Ralstonia eutropha JMP134] gi|134132344|gb|ABO60079.1| phage integrase family protein [Burkholderia vietnamiensis G4] gi|134132472|gb|ABO60455.1| phage integrase family protein [Burkholderia vietnamiensis G4] gi|134132716|gb|ABO60342.1| phage integrase family protein [Burkholderia vietnamiensis G4] gi|134134687|gb|ABO59012.1| phage integrase family protein [Burkholderia vietnamiensis G4] gi|295885953|gb|EFG65880.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 563 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 72/304 (23%), Positives = 127/304 (41%), Gaps = 43/304 (14%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 + LS LT + D + FL T + + R + T+ R F+ + RS+ Sbjct: 259 KALSSLTTR----DATDYRAFLRRPTPRERWVGPPRPRTSTDWRPFV-----DNLSARSI 309 Query: 89 KRSLSGIKSFLKYLKKRK--ITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT- 145 +L+ + + ++L +++ + + + +R K++ AL A T + +L T Sbjct: 310 AHALAVLSAMFRWLVEQRYVVANPFSGIKVRGSKRAM----ALETSHAFTEGEWMLTRTI 365 Query: 146 ----SHETKWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDDQST---LRIQGKGD 195 W + ++L Y GLRISE T ++I D + L + GKG Sbjct: 366 ANGLEWSYGWQAPAAQRLRFMLDFGYATGLRISELADATLRSIEVDAAGDHWLHVVGKGG 425 Query: 196 KIRIVPLLPSVRKAILEYYD---LCPFDLNLNIQLPLFRGIRG-----KPLN-PGVFQRY 246 K V L P R A+ Y L + N L + KPL V +R+ Sbjct: 426 KPARVTLTPLARTALDRYLQERGLPVSRAHWNPTTSLIGSLDDADAGIKPLRLWEVMRRF 485 Query: 247 IRQLRRYL--GLPL------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 R + + + P+ + H +RH+ ATH ++ G +L +++ L H +STT IY Sbjct: 486 FRLVAQIIKNDHPVLAEKLHRASPHWMRHTHATHAIARGVELSAVRDNLRHASISTTSIY 545 Query: 299 TNVN 302 + + Sbjct: 546 LHTD 549 >gi|312128949|ref|YP_003996289.1| integrase family protein [Leadbetterella byssophila DSM 17132] gi|311905495|gb|ADQ15936.1| integrase family protein [Leadbetterella byssophila DSM 17132] Length = 421 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 29/45 (64%) Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 T HT RH+FAT L+ G L S+ ++GH +STTQIY + S+ Sbjct: 348 VTFHTARHTFATMFLTEGVPLESLSKMMGHKNISTTQIYAKITSQ 392 >gi|297626300|ref|YP_003688063.1| Phage integrase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922065|emb|CBL56629.1| Phage integrase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 396 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 9/117 (7%) Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ--RYIR 248 Q KG + R+VP+L ++ + +LE +PL RG RG L + + Sbjct: 258 QTKGRRARLVPILDAL-EPVLER-----LTAEKEPDVPLLRGPRGGVLTTATVRDATHWD 311 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 L + +GLP + T H LRH+ AT L G L +Q ILGH + TT+ Y + + ++ Sbjct: 312 DLVKDIGLP-NLTRHGLRHTGATWLADAGIPLHVLQEILGHQSIETTKGYLHPDHRH 367 >gi|218129569|ref|ZP_03458373.1| hypothetical protein BACEGG_01146 [Bacteroides eggerthii DSM 20697] gi|217988299|gb|EEC54622.1| hypothetical protein BACEGG_01146 [Bacteroides eggerthii DSM 20697] Length = 409 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 58/227 (25%), Positives = 101/227 (44%), Gaps = 30/227 (13%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK--QALTLVDNVLLH 144 +++ L+ +K + K + N K+S PRAL+ + + + V+ Sbjct: 184 TVRHYLAILKKICRIAYKEGYAERCHFANFTLPKQSERTPRALSREDFEKIRDVEIPACR 243 Query: 145 TSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRI-- 199 T+H I R+ L+ C G ++A+S+T N+ DD L ++ + K + Sbjct: 244 TTH----ILVRD----LFLFACYTGTAYADAVSVTRDNLYTDDDGNLWLKYRRKKNELQA 295 Query: 200 -VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 V LLP I +Y+D N P+ R +P + Q +++ L G+ Sbjct: 296 SVKLLPEALALIEKYHDD-----NRPTLFPMVR-------HPNLRQ-HMKSLAVLAGVSS 342 Query: 259 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + H RHSFA+ + L G + +I +LGH ++TTQ+Y V K Sbjct: 343 TLCYHQARHSFASLITLEAGVPIETISRMLGHSDITTTQVYARVIPK 389 >gi|328554916|gb|AEB25408.1| integrase [Bacillus amyloliquefaciens TA208] Length = 343 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 73/316 (23%), Positives = 133/316 (42%), Gaps = 31/316 (9%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTE----EKITIQTIRQ----LSYTEIR----AFISK 77 GL + TL Y+ R F +L E ++IT + +R + Y + R +I K Sbjct: 40 GLRERTLTDYKKMWRYFTEWLNDNYEVTYIDEITTEILRNYINYMKYDKPRYHGHKYI-K 98 Query: 78 RRTQKIG--DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQAL 135 K+G D ++ +L IK+ YL + ++ + ++ L++ L + + Sbjct: 99 SDDNKVGLSDTTININLRTIKALFNYLDREELIEVNPATRVKLLRQDIDLTNCFTDDEI- 157 Query: 136 TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG--- 192 +L + ++ R+ + L GLRI E LSL ++I + I Sbjct: 158 ----KAILRQPNLRDYVGFRDYCAMNCLLDSGLRIEELLSLREKDIDFSSRFITINADVS 213 Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 K K R+VP+ K +L+ L + + +F G+PL F + ++ Sbjct: 214 KNRKHRLVPISAHCVKLLLQ---LITENKSHFTTDRIFLSSYGEPLGANHFNKRLKYYAE 270 Query: 253 YLGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMM 311 G+ TAH RH++A ++ NG D ++Q I G + T + Y ++++ M Sbjct: 271 KAGVKDKKVTAHVYRHTWAKTMILNGCDPFTLQKIGGWSDIRTMRRYIQMDTRA----MR 326 Query: 312 EIYDQTHPSITQKDKK 327 +D P T + KK Sbjct: 327 RSHDDFSPLTTIRKKK 342 >gi|312964753|ref|ZP_07778994.1| resolvase [Escherichia coli 2362-75] gi|312290602|gb|EFR18481.1| resolvase [Escherichia coli 2362-75] Length = 123 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 51 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 94 >gi|289549678|ref|YP_003470582.1| Tn554-related, transposase A [Staphylococcus lugdunensis HKU09-01] gi|289179210|gb|ADC86455.1| Tn554-related, transposase A [Staphylococcus lugdunensis HKU09-01] Length = 367 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 20/172 (11%) Query: 142 LLHTSHETKWIDA----RNSAILYLLYGCGLRISEALSLTPQNIMDDQST-------LRI 190 +L TS + I+A R+ ++ LLY GLRI E LSL +I D + R Sbjct: 171 ILSTSEIKELINASKNLRDKFMIQLLYETGLRIGELLSLYIDDIKYDLTNGHQIILKTRK 230 Query: 191 QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGK----PLNPGVF 243 G +++ + +++++ YD +++ + LF IRGK PL+ Sbjct: 231 NKNGARLKSGERKIYISQSLIDLYDDYLYEVLDEVSTSSEFLFIKIRGKHVGDPLDYNDV 290 Query: 244 QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 ++LR+ G+ + H LRH+ AT + +++ +Q LGH + TT Sbjct: 291 NSIFKRLRKKTGINVH--PHLLRHTHATIFYNKSKNIKQVQERLGHSNIQTT 340 >gi|153930591|ref|YP_001393280.1| putative integrase/resolvase [Yersinia pseudotuberculosis IP 31758] gi|152958135|gb|ABS45598.1| putative integrase/resolvase [Yersinia pseudotuberculosis IP 31758] Length = 263 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 26/177 (14%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQ--NIMDDQSTL-------RIQGKGDKI------ 197 D R ++ L+ G R++EAL+LTP +I D + R +G+G Sbjct: 69 DLRQRLLIETLWNTGARLNEALALTPACFHIEGDSPFVVLKTLKQRQKGRGRPKEGQTLK 128 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL------- 250 RIVPLL ++ Y L F PL+ G ++ + ++R Sbjct: 129 RIVPLLDENYVRLVHEY-LATF--RPKKYAPLWVNEHGDTISDETPRTWLRAAVTRANRD 185 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 LP+ T T RHSFA HL+ +G + +Q+ +GH ++T++YT + + + G Sbjct: 186 SVTFSLPV-ITPKTFRHSFAMHLVQSGVAFKVVQTFMGHKDAASTEVYTRIFALDVG 241 >gi|325299288|ref|YP_004259205.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324318841|gb|ADY36732.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 409 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 20/150 (13%) Query: 162 LLYGC--GLRISEALSLTPQNIM-DDQSTL---RIQGKGDKIRIVPLLPSVRKAILEYYD 215 L+ C G+ ++A+S+T NI DD+ L ++ K + + V LLP A++E Y Sbjct: 253 FLFACYTGVPYADAVSITRDNIYKDDKGDLWLKYLRKKNEYLARVKLLPEA-IALIEKY- 310 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-L 274 N + LF I +P + +R+++ LR G+ H RH+F + + L Sbjct: 311 ------RSNDRKELFPMIH----HPNM-RRHMKGLRDLAGISCDLVYHMGRHTFGSLITL 359 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 G + +I +LGH L+TTQ+Y V K Sbjct: 360 EAGVPIETISKMLGHTNLTTTQLYARVTPK 389 >gi|294084585|ref|YP_003551343.1| phage integrase family protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292664158|gb|ADE39259.1| phage integrase family protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 188 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 85/185 (45%), Gaps = 23/185 (12%) Query: 132 KQALTLVD----NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187 KQA+TL D VL + + T+ R+ I+ GLR E +L ++ D+ + Sbjct: 2 KQAMTLTDAQQKRVLQYCA--TRRHPTRDKTIVLFSLHTGLRAMELAALKLGDVFDEDGS 59 Query: 188 LRIQ-------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP---LFRGIRGKP 237 ++ Q KG R V + +RKA+ +Y + N+ P LF +G Sbjct: 60 VKSQFQLAQRNTKGSNARTVFVNTKLRKALKDYGE------QSNLTQPERALFPSQKGGH 113 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + + + + G +++ H+ R +F T L ++G ++R + ++ GH +S TQ Sbjct: 114 FSANTMCQLFLDIYKACGFEHASS-HSGRRTFITKLANSGVNVRLLATLAGHQHISVTQR 172 Query: 298 YTNVN 302 Y +VN Sbjct: 173 YIDVN 177 >gi|288801874|ref|ZP_06407316.1| integrase [Prevotella melaninogenica D18] gi|288335916|gb|EFC74349.1| integrase [Prevotella melaninogenica D18] Length = 328 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 88/211 (41%), Gaps = 38/211 (18%) Query: 131 EKQALTLVD--NVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQS 186 E+ ALT D +L + H + N L L GC GL S+ L MDD Sbjct: 120 ERNALTADDLQKLLAYRPHRS----TDNHCRLIFLLGCFTGLAFSDLKKLR----MDDVY 171 Query: 187 TLR--------IQGKGDKIRIVPLLPSVRK--AILEYYDLCPFDLNLNIQLPLFRGIRGK 236 T + K IVPLLP K AI+ + + LF R Sbjct: 172 TFGDGRRYISLCRTKTQNRSIVPLLPVAEKILAIVSH----------GRREGLF--FREF 219 Query: 237 PLNPGVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLS 293 P N F R I+++ GL T T+HT RH+FAT + L NG + ++ +LGH +S Sbjct: 220 PSNSN-FNRTIQEICIKAGLLPHTQATSHTARHTFATTICLENGLPIETVSKMLGHRFIS 278 Query: 294 TTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 TT+IY V M + H + +K Sbjct: 279 TTEIYARVTKSKIAKEMQPLMGSEHTRVLRK 309 >gi|320193595|gb|EFW68230.1| type 1 fimbriae regulatory protein FimE [Escherichia coli WV_060327] Length = 198 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 66/158 (41%), Gaps = 2/158 (1%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILE 212 AR+ ++ L Y G+RISE L L Q++ ++ + I+ + V PL R+A+ Sbjct: 26 ARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVER 85 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 + + +F RG L+ R IR G T H LRH+ Sbjct: 86 WTQERANWKGADRTDAIFISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGYE 145 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN-GGDW 309 L G D R IQ LGH + T YT N+ G W Sbjct: 146 LAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLW 183 >gi|317505161|ref|ZP_07963098.1| putative tyrosine type site-specific recombinase [Prevotella salivae DSM 15606] gi|315663721|gb|EFV03451.1| putative tyrosine type site-specific recombinase [Prevotella salivae DSM 15606] Length = 422 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 75/165 (45%), Gaps = 26/165 (15%) Query: 167 GLRISEALSLTPQNIM---DDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYY--DLCPFD 220 GL + L P++I+ D +RI+ K D I+PLLP + K IL Y D D Sbjct: 257 GLARVDMQRLKPKHIIHNADGTEEIRIKRQKTDVEAIIPLLP-IAKQILSLYIKDKKADD 315 Query: 221 L---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSN 276 L NL I+ F + N G R + L T H RH+F+T + LSN Sbjct: 316 LIFPNLTIRKASFACV-----NIGQICRIEKGL----------TFHMARHTFSTTICLSN 360 Query: 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321 G + ++ +LGH + TTQIY + + M + D+ H + Sbjct: 361 GISMETLSKMLGHSNIGTTQIYGKITDHKIQEDMTALTDREHTAF 405 >gi|307268429|ref|ZP_07549807.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX4248] gi|306515236|gb|EFM83773.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX4248] Length = 309 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 13/147 (8%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV------RKAILE 212 + L+ GLR SEAL+LTP++ + + I+ + S RK ++ Sbjct: 141 FILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKNPTGFFQSTKNESSKRKVQID 200 Query: 213 YYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 + F N+ P+F ++G+ N + R ++ L + +P+ T H+LRH+ Sbjct: 201 WQTAMQFSQLIRNMPPMEPIF--VKGRVFNSTINNR-LKVLCKRAQIPV-ITVHSLRHTH 256 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ 296 A+ LL G + S+ + LGH ++TTQ Sbjct: 257 ASLLLFAGVSIASVATRLGHSSMTTTQ 283 >gi|262068300|ref|ZP_06027912.1| integrase/recombinase, phage integrase family [Fusobacterium periodonticum ATCC 33693] gi|291377988|gb|EFE85506.1| integrase/recombinase, phage integrase family [Fusobacterium periodonticum ATCC 33693] Length = 329 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 58/249 (23%), Positives = 108/249 (43%), Gaps = 21/249 (8%) Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK----SFLKYLKKRKITTESNILNM 116 ++I+ ++ ++R ++ QK G+ S K ++ I+ SF +L++ +S + + Sbjct: 88 KSIKHITTNDLREYLD--NYQKEGNAS-KITIDNIRRIFSSFFAWLEEEDYILKSPVRRI 144 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 +K + +++ + DN R+ AI+ +L G+R+ E + L Sbjct: 145 HKVKTGTVVKETYSDEAMEIMRDNCK----------SLRDLAIIDILASTGMRVGELVKL 194 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 ++I + + GKGDK R V + K L Y D N + + L + K Sbjct: 195 NIEDIDFEGRECVVFGKGDKERKV-YFDARTKIHLHNYLKTRDDDNSALFVSLLKP--HK 251 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 L + +RQL R L + H R + AT + G + +Q +LGH ++ TT Sbjct: 252 RLQISGVEIMLRQLGRKLNIT-KVHPHKFRRTLATKAIDKGMPIEQVQQLLGHQKIDTTL 310 Query: 297 IYTNVNSKN 305 Y V+ N Sbjct: 311 QYAMVSQNN 319 >gi|257078400|ref|ZP_05572761.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|294780397|ref|ZP_06745764.1| site-specific recombinase, phage integrase family [Enterococcus faecalis PC1.1] gi|256986430|gb|EEU73732.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|294452526|gb|EFG20961.1| site-specific recombinase, phage integrase family [Enterococcus faecalis PC1.1] gi|329575632|gb|EGG57165.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX1467] Length = 309 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 13/147 (8%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV------RKAILE 212 + L+ GLR SEAL+LTP++ + + I+ + S RK ++ Sbjct: 141 FILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKNPTGFFQSTKNESSKRKVQID 200 Query: 213 YYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 + F N+ P+F ++G+ N + R ++ L + +P+ T H+LRH+ Sbjct: 201 WQTAMQFSQLIRNMPPMEPIF--VKGRVFNSTINNR-LKVLCKRAQIPV-ITVHSLRHTH 256 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ 296 A+ LL G + S+ + LGH ++TTQ Sbjct: 257 ASLLLFAGVSIASVATRLGHSSMTTTQ 283 >gi|255009533|ref|ZP_05281659.1| integrase [Bacteroides fragilis 3_1_12] gi|313147308|ref|ZP_07809501.1| integrase [Bacteroides fragilis 3_1_12] gi|313136075|gb|EFR53435.1| integrase [Bacteroides fragilis 3_1_12] Length = 372 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 77/173 (44%), Gaps = 32/173 (18%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQS-----TLRIQGKGDKIRIVPLLPSVRKAILEYY 214 L+GC GLR S+ LT Q I + T R+Q K +I P+ E Y Sbjct: 224 FLFGCLTGLRKSDIKQLTWQQIQPYTNGKMFVTTRMQ-KTKQIVHNPISD-------EAY 275 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 L L + +F G + K L G +R++ G+ T H RHSF + + Sbjct: 276 GL----LGERCEGLIFDGFKDKMLQ-GPLKRWLLAA----GITKKITFHCTRHSFGSLHV 326 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327 G D+ IQ+ LGH ++TTQIY SK M E+ D+ IT K KK Sbjct: 327 EMGTDMAVIQAYLGHKNITTTQIY----SKMAAQQMCEVVDK----ITLKRKK 371 >gi|213052516|ref|ZP_03345394.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 94 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Query: 234 RGKPLNP--GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291 +GK P F+R ++ R + LP H LRH+FA+H + NGG++ ++ ILGH Sbjct: 6 QGKLFTPCRKSFERAVK--RAGIELPEGQCTHVLRHTFASHFMMNGGNILVLRDILGHAD 63 Query: 292 LSTTQIYTN 300 + T +Y + Sbjct: 64 IKMTMVYAH 72 >gi|41179218|ref|NP_958556.1| putative integrase [Lactobacillus prophage Lj965] gi|42518375|ref|NP_964305.1| Lj965 prophage integrase [Lactobacillus johnsonii NCC 533] gi|38731488|gb|AAR27434.1| putative integrase [Lactobacillus prophage Lj965] gi|41582660|gb|AAS08271.1| Lj965 prophage integrase [Lactobacillus johnsonii NCC 533] Length = 391 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 40/182 (21%) Query: 162 LLYGCGLRISEALSLTPQNI----------------MDDQSTLRIQGKGDKIRIVPLLPS 205 LL GLR SEAL+LT Q+I +D+++ ++ RI+P+ S Sbjct: 205 LLSATGLRKSEALALTWQDIDLKAGTLSINKTLAYGLDNKTIIQPPKSPKSKRILPISDS 264 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR--------RY---- 253 +++ +++Y I LF I+G L ++++ + +Y Sbjct: 265 LKEVLIDYKQKQKI-----ISNKLFHTIKGTYLKMSKPDQWLKSIYAKDHEEKVKYAKTH 319 Query: 254 -LGLPLST----TAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTT-QIYTNVNSKNG 306 L P T H RH+FAT L++ +++Q +LGH + T IYT+VN+KN Sbjct: 320 NLKEPQPDLRHITVHGFRHTFATLLIAETNVKPKTVQMLLGHENIQMTLDIYTHVNNKNK 379 Query: 307 GD 308 D Sbjct: 380 ED 381 >gi|24379472|ref|NP_721427.1| site-specific tyrosine recombinase XerS [Streptococcus mutans UA159] gi|34222767|sp|O69155|XERS_STRMU RecName: Full=Tyrosine recombinase xerS gi|24377409|gb|AAN58733.1|AE014942_9 putative integrase/recombinase; XerC-like [Streptococcus mutans UA159] Length = 356 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 70/300 (23%), Positives = 119/300 (39%), Gaps = 60/300 (20%) Query: 58 ITIQTIRQLSYTEIRAFI----------SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI 107 I ++T+ LS ++ +FI +K + Q + ++ R+LS + S KYL + Sbjct: 66 IPLETLEHLSKKDMESFILYLRERTLLNTKNKRQGVSQTTINRTLSALSSLYKYLTEEVE 125 Query: 108 TTESNILNMRNLKKSNSL--------PRALNEKQALTLVDNVL-----LHTSHETKWID- 153 + RN+ K S RA N KQ L L + + + +E K Sbjct: 126 NADGEPYFYRNVMKKVSTKKKKETLAARAENIKQKLFLGNETMEFLEYVDCEYEHKLSKR 185 Query: 154 ---------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 R+ AI+ LL G+R+SEA++L +++ + + + KG K V + Sbjct: 186 ALSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVTRKGGKHDSVNV-A 244 Query: 205 SVRKAILEYY-------------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 K LE Y DL F L +RG+ + ++ ++ + + Sbjct: 245 GFAKPYLENYITIRRGRYKAKKTDLAFF-------LSEYRGVPNR-MDASSIEKMVAKYS 296 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV---NSKNGGD 308 + + T H LRH+ AT L + LGH T +YT++ KN D Sbjct: 297 Q--DFKIRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354 >gi|330909749|gb|EGH38259.1| type 1 fimbriae regulatory protein FimE [Escherichia coli AA86] Length = 202 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 66/158 (41%), Gaps = 2/158 (1%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILE 212 AR+ ++ L Y G+RISE L L Q++ ++ + I+ + V PL R+A+ Sbjct: 26 ARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVER 85 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 + + +F RG L+ R IR G T H LRH+ Sbjct: 86 WTQERANWKGADRTDAIFISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGYE 145 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN-GGDW 309 L G D R IQ LGH + T YT N+ G W Sbjct: 146 LAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLW 183 >gi|325297479|ref|YP_004257396.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324317032|gb|ADY34923.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 409 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 56/228 (24%), Positives = 99/228 (43%), Gaps = 32/228 (14%) Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 +++ L+ +K + K + N +K+ PRAL+ + + D + Sbjct: 184 TVRHYLAILKKVCRIAYKEGYAERCHFANFTLPQKTERTPRALSREDFEKIRDVEI---- 239 Query: 147 HETKWIDARNSAILY---LLYGC--GLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRI- 199 W R + IL L+ C G ++A+S+T N+ DD+ L ++ + K + Sbjct: 240 --PAW---RTTHILVRDLFLFACYTGTAYADAVSVTRDNLYTDDEGCLWLKYRRQKNELR 294 Query: 200 --VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 V LLP I +Y+D N P+ +P + +R+++ L G+ Sbjct: 295 ASVKLLPEALALIEKYHDD-----NRPTLFPMV-------YHPNL-RRHMKSLAVLAGVS 341 Query: 258 LSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + H RHSFA+ + L G + +I +LGH + TTQ+Y V K Sbjct: 342 STLCYHQARHSFASLITLEAGVPIETISRMLGHSNIQTTQVYARVTPK 389 >gi|320180759|gb|EFW55685.1| Integrase [Shigella boydii ATCC 9905] gi|320196862|gb|EFW71484.1| Integrase [Escherichia coli WV_060327] Length = 326 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 1/60 (1%) Query: 243 FQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 ++++ LRR +P + H LRH+FA+H + NGG++ ++Q ILGH + T Y ++ Sbjct: 247 YEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 306 >gi|290474812|ref|YP_003467692.1| tyrosine recombinase, regulator of fimA [Xenorhabdus bovienii SS-2004] gi|289174125|emb|CBJ80912.1| tyrosine recombinase, regulator of fimA [Xenorhabdus bovienii SS-2004] Length = 210 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 2/157 (1%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213 RN + ++ + G R+SE L L ++ + D+S + K I P++ + I ++ Sbjct: 27 RNICMFFMGFIHGFRVSELLRLRMSDVDLRDRSLSVNRLKNGFSTIHPMIAREIQLIRKW 86 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 + LF G+PL+ F + IR + + H LRHS L Sbjct: 87 MTIRKKLEKFGKSEWLFISRTGEPLSRQQFYKIIRNTSIKAEIAICANPHMLRHSCGYAL 146 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNS-KNGGDW 309 NG D R IQ LGH + T IYT N+ + G W Sbjct: 147 ADNGVDTRLIQDYLGHRNIRHTVIYTASNAGRFDGIW 183 >gi|296088960|emb|CBI38526.3| unnamed protein product [Vitis vinifera] Length = 158 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 87 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 130 >gi|326204963|ref|ZP_08194815.1| integrase family protein [Clostridium papyrosolvens DSM 2782] gi|325984892|gb|EGD45736.1| integrase family protein [Clostridium papyrosolvens DSM 2782] Length = 375 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 4/77 (5%) Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-TAHTLRHSFATHLLSNGGDL--RSIQS 285 LF RG L P R ++ + GLP + H LRHS+ +HL S D+ R IQ Sbjct: 278 LFLSERGTMLTPNSITRNFKEYLKSAGLPYEHFSPHCLRHSYISHL-SEKDDVSPRFIQD 336 Query: 286 ILGHFRLSTTQIYTNVN 302 +GH L+TTQ+YT+++ Sbjct: 337 QVGHVFLATTQLYTHLS 353 >gi|257063564|ref|YP_003143236.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM 20476] gi|256791217|gb|ACV21887.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM 20476] Length = 460 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 40/74 (54%), Gaps = 5/74 (6%) Query: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTN---VNSKN 305 R LG P H LRH+ AT LL NG D++S+Q+ LGH R S T Y + N K Sbjct: 377 FRDSLGFP-ELNMHELRHTQATMLLGNGIDVKSVQTRLGHSRASVTLDQYAHAIPANDKA 435 Query: 306 GGDWMMEIYDQTHP 319 D M EI +++ P Sbjct: 436 AADLMGEIMNKSVP 449 >gi|227517376|ref|ZP_03947425.1| bacteriophage integrase [Enterococcus faecalis TX0104] gi|229548135|ref|ZP_04436860.1| bacteriophage integrase [Enterococcus faecalis ATCC 29200] gi|256958289|ref|ZP_05562460.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|257088127|ref|ZP_05582488.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|257091256|ref|ZP_05585617.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|307274411|ref|ZP_07555595.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX2134] gi|312905315|ref|ZP_07764430.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0635] gi|227075175|gb|EEI13138.1| bacteriophage integrase [Enterococcus faecalis TX0104] gi|229306736|gb|EEN72732.1| bacteriophage integrase [Enterococcus faecalis ATCC 29200] gi|256948785|gb|EEU65417.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|256996157|gb|EEU83459.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|257000068|gb|EEU86588.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|306508921|gb|EFM78007.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX2134] gi|310631339|gb|EFQ14622.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0635] gi|315026884|gb|EFT38816.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX2137] gi|315036577|gb|EFT48509.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0027] gi|315162494|gb|EFU06511.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0645] gi|315578594|gb|EFU90785.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0630] Length = 309 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 13/147 (8%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV------RKAILE 212 + L+ GLR SEAL+LTP++ + + I+ + S RK ++ Sbjct: 141 FILLVVKTGLRFSEALALTPKDFDFSKQKITIEKTWNYKNPTGFFQSTKNESSKRKVQID 200 Query: 213 YYDLCPFDL---NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 + F N+ P+F ++G+ N + R ++ L + +P+ T H+LRH+ Sbjct: 201 WQTAMQFSQLIRNMPPMEPIF--VKGRVFNSTINSR-LKVLCKRAQIPV-ITVHSLRHTH 256 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQ 296 A+ LL G + S+ + LGH ++TTQ Sbjct: 257 ASLLLFAGVSIASVATRLGHSSMTTTQ 283 >gi|255281089|ref|ZP_05345644.1| site-specific recombinase, phage integrase family [Bryantella formatexigens DSM 14469] gi|255268537|gb|EET61742.1| site-specific recombinase, phage integrase family [Bryantella formatexigens DSM 14469] Length = 291 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 9/153 (5%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILE 212 + R S I+ + G+R+SE +T + + ++ + ++GK R V L + + +L+ Sbjct: 134 NTRLSLIMQTICSTGIRVSELEFITVEALYSGRAIVSLKGK---TRAVLLPAELCRKLLK 190 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL-PLSTTAHTLRHSFAT 271 Y + +F G PL+ ++ L G+ P H LRH FA Sbjct: 191 YVRAHNI-----VNGCVFVSRNGNPLDRSNIFHDMKALCETAGVSPQKVFPHNLRHLFAV 245 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 D+ + ILGH + TT+IYT VN K Sbjct: 246 TYYEEEKDIAHLADILGHSSIDTTRIYTLVNGK 278 >gi|197302009|ref|ZP_03167072.1| hypothetical protein RUMLAC_00739 [Ruminococcus lactaris ATCC 29176] gi|197298957|gb|EDY33494.1| hypothetical protein RUMLAC_00739 [Ruminococcus lactaris ATCC 29176] Length = 308 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 55/184 (29%), Positives = 80/184 (43%), Gaps = 23/184 (12%) Query: 126 PRA-----LNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQN 180 PRA LN+ + TL+ + L E W + L+ G+R SEAL++TP + Sbjct: 110 PRAKKIKYLNQFELHTLIAH--LDIREEVNW-----DWFILLVAKTGMRFSEALAITPSD 162 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLP-----SVRKAILEYYDLCPFD---LNLNIQLPLFRG 232 + TL I D LP SVRK +++ + F NL P+F G Sbjct: 163 FDFARQTLSISKTWDYKGNGGFLPTKNNSSVRKIQIDWQIVVKFSELTKNLPEDKPIFVG 222 Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 K N V R + G+ + H LRH+ A+ LL G + S+ LGH + Sbjct: 223 -ETKIYNSTVNDVLTRHCKA-CGIS-EISIHGLRHTHASLLLFAGVSIASVARRLGHASM 279 Query: 293 STTQ 296 +TTQ Sbjct: 280 TTTQ 283 >gi|53712520|ref|YP_098512.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|52215385|dbj|BAD47978.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] Length = 419 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 59/143 (41%), Gaps = 26/143 (18%) Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226 GLR + L + I D + R+ K + V +P +A+ LC Sbjct: 273 GLRHCDIQKLRWKEISMDGNQARLHFTQQKTKGVEYMPISEQAL----QLC--------- 319 Query: 227 LPLFRGIRGKPL--------NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278 G R KP +P + +++ G+ T H RH+FAT LS+ Sbjct: 320 -----GERRKPEQLVFEDLPDPAWISKPLKKWVESAGIKKKITYHCFRHTFATLQLSSST 374 Query: 279 DLRSIQSILGHFRLSTTQIYTNV 301 D+ ++ +LGH + TTQIY V Sbjct: 375 DIYTVSKMLGHTNVKTTQIYAKV 397 >gi|265756479|ref|ZP_06090685.1| transposase [Bacteroides sp. 3_1_33FAA] gi|263233667|gb|EEZ19282.1| transposase [Bacteroides sp. 3_1_33FAA] Length = 409 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 56/192 (29%), Positives = 84/192 (43%), Gaps = 27/192 (14%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 KK N P+AL + L + D L K + L+ Y G ++ +S+T + Sbjct: 218 KKENP-PKALTREDFLKIRD---LEIPERRKSLALTRDLFLFACY-TGTAYADTVSITEE 272 Query: 180 NIMDDQST---LRIQGKGDKIRI-VPLLPSVRKAILEYYDLCPFDLNLNIQLPL--FRGI 233 N+ D+ L+ K +K+ V LLP + +Y D P L LP FR + Sbjct: 273 NLFRDEEGSLWLKYHRKKNKMLARVKLLPEALSMLEKYKD--PTRPTL---LPPQEFRVL 327 Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRL 292 RG ++ LR G+ + H RHSFA+ + L G + +I +LGH + Sbjct: 328 RGN----------MKSLRVLSGISMDLVYHVGRHSFASLVTLEEGVPIETISRMLGHNNI 377 Query: 293 STTQIYTNVNSK 304 TTQIY V K Sbjct: 378 QTTQIYARVTPK 389 >gi|290580525|ref|YP_003484917.1| putative integrase/recombinase [Streptococcus mutans NN2025] gi|254997424|dbj|BAH88025.1| putative integrase/recombinase [Streptococcus mutans NN2025] Length = 356 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 70/300 (23%), Positives = 119/300 (39%), Gaps = 60/300 (20%) Query: 58 ITIQTIRQLSYTEIRAFI----------SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI 107 I ++T+ LS ++ +FI +K + Q + ++ R+LS + S KYL + Sbjct: 66 IPLETLEHLSKKDMESFILYLRERTLLNTKNKRQGVSQTTINRTLSALSSLYKYLTEEVE 125 Query: 108 TTESNILNMRNLKKSNSL--------PRALNEKQALTLVDNVL-----LHTSHETKWID- 153 + RN+ K S RA N KQ L L + + + +E K Sbjct: 126 NADGEPYFYRNVMKKVSTKKKKETLAARAENIKQKLFLGNETMEFLEYVDCEYEHKLSKR 185 Query: 154 ---------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 R+ AI+ LL G+R+SEA++L +++ + + + KG K V + Sbjct: 186 ALSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVTRKGGKHDSVNV-A 244 Query: 205 SVRKAILEYY-------------DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 K LE Y DL F L +RG+ + ++ ++ + + Sbjct: 245 GFAKPYLENYITIRRGRYKAEKTDLAFF-------LSEYRGVPNR-MDASSIEKMVAKYS 296 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV---NSKNGGD 308 + + T H LRH+ AT L + LGH T +YT++ KN D Sbjct: 297 Q--DFKIRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354 >gi|238903406|ref|YP_002929202.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli BW2952] gi|238863731|gb|ACR65729.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli BW2952] Length = 201 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 66/158 (41%), Gaps = 2/158 (1%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILE 212 AR+ ++ L Y G+RISE L L Q++ ++ + I+ + V PL R+A+ Sbjct: 29 ARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVER 88 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 + + +F RG L+ R IR G T H LRH+ Sbjct: 89 WTQERANWKGADRTDAIFISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGYE 148 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN-GGDW 309 L G D R IQ LGH + T YT N+ G W Sbjct: 149 LAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLW 186 >gi|218249160|ref|YP_002374530.1| integrase domain protein SAM domain protein [Cyanothece sp. PCC 8801] gi|218169736|gb|ACK68470.1| integrase domain protein SAM domain protein [Cyanothece sp. PCC 8801] Length = 314 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 71/267 (26%), Positives = 109/267 (40%), Gaps = 29/267 (10%) Query: 22 LQNLEIERGLS--KLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79 LQN+ +E L+ L+ S + R+ L FLA + IQ+ + Y + Sbjct: 21 LQNVRVEEFLATKALSPNSQKAYRRELLTFLAIVNKPFARIQSRHIVQY-------KVQL 73 Query: 80 TQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVD 139 T+K+ S+ R+LS + SF +L++ + L +R K R L++ + L + Sbjct: 74 TEKLAPSSVNRALSALSSFFDWLEE-AYGNPNPTLTIRQNKLPLPPARDLSDAELEALFE 132 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDK 196 + + R+ A+ L GLR E SL + D +R+ K D Sbjct: 133 AL----ENRPNLTKVRDKAVFAALR-HGLRAGEVASLN----LGDYDGIRLHIRVAKDDS 183 Query: 197 IRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQR-----YIRQL 250 VPL R AI Y + N PLF P P F +I++L Sbjct: 184 SGHVPLDAPGRDAINTYLQQRRETGESFNPTSPLFLSHSPVPNTPPRFGYQGIYYFIKEL 243 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNG 277 G+ + T H LRH+FAT LL G Sbjct: 244 GEMAGV-ANLTPHRLRHTFATQLLLTG 269 >gi|300899506|ref|ZP_07117748.1| site-specific recombinase, phage integrase family [Escherichia coli MS 198-1] gi|300922907|ref|ZP_07138984.1| site-specific recombinase, phage integrase family [Escherichia coli MS 182-1] gi|300947236|ref|ZP_07161442.1| site-specific recombinase, phage integrase family [Escherichia coli MS 116-1] gi|300356911|gb|EFJ72781.1| site-specific recombinase, phage integrase family [Escherichia coli MS 198-1] gi|300420785|gb|EFK04096.1| site-specific recombinase, phage integrase family [Escherichia coli MS 182-1] gi|300453136|gb|EFK16756.1| site-specific recombinase, phage integrase family [Escherichia coli MS 116-1] Length = 336 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 1/60 (1%) Query: 243 FQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 ++++ LRR +P + H LRH+FA+H + NGG++ ++Q ILGH + T Y ++ Sbjct: 257 YEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 316 >gi|225376750|ref|ZP_03753971.1| hypothetical protein ROSEINA2194_02392 [Roseburia inulinivorans DSM 16841] gi|225211376|gb|EEG93730.1| hypothetical protein ROSEINA2194_02392 [Roseburia inulinivorans DSM 16841] Length = 323 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 65/289 (22%), Positives = 127/289 (43%), Gaps = 31/289 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 +L +ER K T++ Y C+ + L + I I I+ ++ +R ++ + +T Sbjct: 52 FLTTKHLERCSDK-TIRYYRCNIEKML--------DTINIPVIK-ITTEMLRKYLVEYQT 101 Query: 81 ----QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALT 136 K+ +++RSLS +F +L++ +S + + +K + + + +++ Sbjct: 102 INNCGKVTIDNIRRSLS---TFFSWLEEEDYIIKSPMKRIHKVKTAVIVKDTIPDEKIEI 158 Query: 137 LVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDK 196 L DN + R+ A++ L G+R+ E + L +I + + GKGDK Sbjct: 159 LRDNCN----------NLRDRAMIDFLLSTGIRVGELVRLNIDDIDFSERECVVYGKGDK 208 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 R + +L Y + D N+ + + L + + GV R +R++ + LG+ Sbjct: 209 ERKAYFDAKTKIHLLNYIE-SRTDNNIALFVSLNKP-HSRLTESGVELR-LREMGKKLGV 265 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 H R + T + G + +Q ILGH ++ TT Y VN N Sbjct: 266 E-KVHPHKFRRTMDTRAIEKGMLIEQVQKILGHEQIDTTLRYAMVNQNN 313 >gi|254975124|ref|ZP_05271596.1| phage integrase family site specific recombinase [Clostridium difficile QCD-66c26] gi|255092513|ref|ZP_05321991.1| phage integrase family site specific recombinase [Clostridium difficile CIP 107932] gi|255306536|ref|ZP_05350707.1| phage integrase family site specific recombinase [Clostridium difficile ATCC 43255] gi|255314251|ref|ZP_05355834.1| phage integrase family site specific recombinase [Clostridium difficile QCD-76w55] gi|255516930|ref|ZP_05384606.1| phage integrase family site specific recombinase [Clostridium difficile QCD-97b34] gi|255650033|ref|ZP_05396935.1| phage integrase family site specific recombinase [Clostridium difficile QCD-37x79] gi|260683181|ref|YP_003214466.1| prophage lambdaba04, site-specific recombinase [Clostridium difficile CD196] gi|260686779|ref|YP_003217912.1| prophage lambdaba04, site-specific recombinase, phage integrase family [Clostridium difficile R20291] gi|306519568|ref|ZP_07405915.1| prophage lambdaba04, site-specific recombinase, phage integrase family protein [Clostridium difficile QCD-32g58] gi|260209344|emb|CBA62764.1| prophage lambdaba04, site-specific recombinase, phage integrase family [Clostridium difficile CD196] gi|260212795|emb|CBE03954.1| prophage lambdaba04, site-specific recombinase, phage integrase family [Clostridium difficile R20291] Length = 376 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 3/71 (4%) Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 G+ +N +RQ+R + L H+LRH+ AT LL NG +++ IQ+ LGH +LST Sbjct: 294 GQQVNTHTLDTIVRQIR--VALNNDFHFHSLRHAHATLLLENGANIKDIQNRLGHSQLST 351 Query: 295 T-QIYTNVNSK 304 T Y++V K Sbjct: 352 TMDTYSHVTDK 362 >gi|30065733|ref|NP_839878.1| Int [Yersinia phage L-413C] gi|293417378|ref|ZP_06660002.1| phage integrase family site-specific recombinase [Escherichia coli B185] gi|30025927|gb|AAP04466.1| Int [Yersinia phage L-413C] gi|291430898|gb|EFF03894.1| phage integrase family site-specific recombinase [Escherichia coli B185] Length = 326 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 1/60 (1%) Query: 243 FQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 ++++ LRR +P + H LRH+FA+H + NGG++ ++Q ILGH + T Y ++ Sbjct: 247 YEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 306 >gi|227551861|ref|ZP_03981910.1| phage integrase family site specific recombinase [Enterococcus faecium TX1330] gi|227179033|gb|EEI60005.1| phage integrase family site specific recombinase [Enterococcus faecium TX1330] Length = 409 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 31/171 (18%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ----GKGDK-----------------IRIV 200 +++ GLR SEAL L +I Q+TL I G +K R + Sbjct: 216 IIFDQGLRKSEALGLQWADIDFSQNTLNINRERLGAAEKGPNKGLIITDDTKTPSGTRSL 275 Query: 201 PLLPSVRKAIL-------EYYDLCPF--DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 P+ V+KA+L + + P D + + +R +G P+ ++ Sbjct: 276 PMTKRVKKALLTLRNQVIKEFGFLPETDDHEAFLFINTYRKNKGIPIRDRTVNGASHRIE 335 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + LP T H RH+FA G L I+ LGH +STTQ+Y +++ Sbjct: 336 KRANLP-HITVHDGRHTFAARTRQAGIPLEDIKDFLGHKDVSTTQVYAHIS 385 >gi|148974962|ref|ZP_01811942.1| Integrase [Vibrionales bacterium SWAT-3] gi|145965471|gb|EDK30720.1| Integrase [Vibrionales bacterium SWAT-3] Length = 125 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 6/71 (8%) Query: 236 KPLNPGVFQR------YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGH 289 KP + +F++ YI + + + LP +H LRHSFA+H + NGG++ ++ ILGH Sbjct: 37 KPTSGKLFEQCYTPFCYILKNKLGISLPSGQASHVLRHSFASHFMMNGGNILVLRDILGH 96 Query: 290 FRLSTTQIYTN 300 +S T Y + Sbjct: 97 ADISMTMRYAH 107 >gi|87162323|ref|YP_493499.1| integrase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|161509091|ref|YP_001574750.1| integrase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294850166|ref|ZP_06790902.1| integrase [Staphylococcus aureus A9754] gi|87128297|gb|ABD22811.1| integrase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|160367900|gb|ABX28871.1| integrase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294822940|gb|EFG39373.1| integrase [Staphylococcus aureus A9754] gi|315197242|gb|EFU27580.1| integrase [Staphylococcus aureus subsp. aureus CGS01] gi|320140818|gb|EFW32666.1| site-specific recombinase, phage integrase family [Staphylococcus aureus subsp. aureus MRSA131] gi|320142989|gb|EFW34781.1| site-specific recombinase, phage integrase family [Staphylococcus aureus subsp. aureus MRSA177] Length = 406 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 30/171 (17%) Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGK---------GDKIRIVPLLPS------------ 205 G+RI E L++ ++I D +L I G G ++ S Sbjct: 230 GMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSC 289 Query: 206 --VRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 ++KAILE ++ LN N +F +G P+ F + +R+ + +G+ Sbjct: 290 EILKKAILENKKDSKWNDGYLNRNF---VFTNHKGNPMQTERFNKILREAAKDVGIDKEV 346 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310 ++H LRHS + L G L++I +GH TT IY++V + D M Sbjct: 347 SSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMM 397 >gi|91213958|ref|YP_543944.1| tyrosine recombinase [Escherichia coli UTI89] gi|110644754|ref|YP_672484.1| tyrosine recombinase [Escherichia coli 536] gi|117626621|ref|YP_859944.1| tyrosine recombinase [Escherichia coli APEC O1] gi|191170750|ref|ZP_03032302.1| type 1 fimbriae regulatory protein FimE [Escherichia coli F11] gi|215489637|ref|YP_002332068.1| tyrosine recombinase [Escherichia coli O127:H6 str. E2348/69] gi|218692718|ref|YP_002400930.1| tyrosine recombinase [Escherichia coli ED1a] gi|91075532|gb|ABE10413.1| type 1 fimbriae regulatory protein FimE [Escherichia coli UTI89] gi|110346346|gb|ABG72583.1| type 1 fimbriae regulatory protein FimE [Escherichia coli 536] gi|115515745|gb|ABJ03820.1| type 1 fimbriae regulatory protein FimE [Escherichia coli APEC O1] gi|190908974|gb|EDV68561.1| type 1 fimbriae regulatory protein FimE [Escherichia coli F11] gi|215267709|emb|CAS12168.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli O127:H6 str. E2348/69] gi|218430282|emb|CAV18156.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli ED1a] gi|222036049|emb|CAP78794.1| Type 1 fimbriae regulatory protein fimE [Escherichia coli LF82] gi|294490349|gb|ADE89105.1| type 1 fimbriae regulatory protein FimE [Escherichia coli IHE3034] gi|307629471|gb|ADN73775.1| tyrosine recombinase [Escherichia coli UM146] gi|312948932|gb|ADR29759.1| tyrosine recombinase [Escherichia coli O83:H1 str. NRG 857C] Length = 198 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 66/158 (41%), Gaps = 2/158 (1%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILE 212 AR+ ++ L Y G+RISE L L Q++ ++ + I+ + V PL R+A+ Sbjct: 26 ARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVER 85 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 + + +F RG L+ R IR G T H LRH+ Sbjct: 86 WTQERANWKGADRTDAIFISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGYE 145 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN-GGDW 309 L G D R IQ LGH + T YT N+ G W Sbjct: 146 LAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLW 183 >gi|332829724|gb|EGK02370.1| hypothetical protein HMPREF9455_01640 [Dysgonomonas gadei ATCC BAA-286] Length = 307 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 KP P ++ Y +Q + + +P+ H LRHSFAT + + D +++ ILGH +ST Sbjct: 224 SKPTEPRTYRNYYKQFMQEINVPV-LKFHGLRHSFATRCIESKCDYKTVSVILGHSNIST 282 Query: 295 T 295 T Sbjct: 283 T 283 >gi|330468542|ref|YP_004406285.1| integrase family protein [Verrucosispora maris AB-18-032] gi|328811513|gb|AEB45685.1| integrase family protein [Verrucosispora maris AB-18-032] Length = 230 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 43/163 (26%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI--------------QGKGDKIRIVPLLPSVR 207 L GCGLR E ++P ++ + L++ KG K R VPL SV Sbjct: 28 LGAGCGLRQGEIFGVSPTDLDPTRPVLQVVRQVKLVRGALIFAPPKGGKTREVPLPASVS 87 Query: 208 KAILEYYDLCPFDLNLNIQLPLFRGIRGKPL-------------------NPGVFQRYIR 248 + + E+ + P + + LP + G P+ NPGV++ IR Sbjct: 88 RRLAEHAEQYP---PVEVALP-WATPTGDPVSVTLYLTDADDLPLSRSKFNPGVWKHAIR 143 Query: 249 QLRRYLGLPLS--TTAHTLRHSFATHLLSNGGDLRSIQSILGH 289 G+P H LRH++A+ LL G ++++ + LGH Sbjct: 144 AT----GIPDDRRNGMHVLRHTYASVLLDAGESIKALSTYLGH 182 >gi|307564601|ref|ZP_07627138.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307346686|gb|EFN91986.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 439 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 80/181 (44%), Gaps = 22/181 (12%) Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTL 188 E+ ALT D L + + +D N L L GC GL S+ L ++ Sbjct: 219 ERNALTSDDLHKLLSYRPHRSVD--NHCRLIFLLGCFTGLAFSDLKKLRMGDVYTFGDGR 276 Query: 189 R----IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 R + K IVPLLP + + D L LFR P N F Sbjct: 277 RYISLCRTKTQNRSIVPLLPIAEEILTIVSDGRKEGL-------LFREF---PTN-SHFN 325 Query: 245 RYIRQLRRYLGLPLST--TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 R IR + GLP T T+HT RH+FAT + L NG + ++ +LGH +STT++Y V Sbjct: 326 RKIRDIIIKAGLPSHTEATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTELYAKV 385 Query: 302 N 302 + Sbjct: 386 S 386 >gi|303243202|ref|ZP_07329630.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302589257|gb|EFL59077.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 278 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 75/278 (26%), Positives = 120/278 (43%), Gaps = 31/278 (11%) Query: 40 ECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL-SGI--- 95 E T Q + FL + I+ I + Y IS ++ K D S RS SGI Sbjct: 2 EAKTIQVIRFLNY-----ISNNGIENIKYISADYIISYAKSLK--DASYARSTRSGILFT 54 Query: 96 -KSFLKYLKKRKITTES--NILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWI 152 +SFL +L ++ +E + + KS +P +E + + +LLH + + + I Sbjct: 55 LRSFLSFLHDKQYISEPLQGLFPVIFSNKSERIPSYYSEDE----LKKILLHVNRD-EII 109 Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI-VPLLPSVRKAIL 211 R+ IL L G+R + L + I +++T+ + K I +PL +V+ A++ Sbjct: 110 GKRDYLILLLAIQLGIRAGDIRMLKLEYIHWEKNTIEFTQQKTKNPIQLPLPENVKFAMI 169 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ-LRRYL---GLPLSTTAHTL-- 265 +Y + LP P +P V + RYL G+ S H L Sbjct: 170 DYIK----NGRPKSSLPYIFLRHRAPYDPYVATNVFHDVITRYLIEAGISFSGRKHGLHS 225 Query: 266 -RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 RHS A++LL N I ILGH STT+ Y ++ Sbjct: 226 ARHSLASNLLKNNTPYPVITGILGHENTSTTRSYLAID 263 >gi|257895547|ref|ZP_05675200.1| site-specific recombinase [Enterococcus faecium Com12] gi|257832112|gb|EEV58533.1| site-specific recombinase [Enterococcus faecium Com12] Length = 407 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 31/171 (18%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ----GKGDK-----------------IRIV 200 +++ GLR SEAL L +I Q+TL I G +K R + Sbjct: 214 IIFDQGLRKSEALGLQWADIDFSQNTLNINRERLGAAEKGPNKGLIITDDTKTPSGTRSL 273 Query: 201 PLLPSVRKAIL-------EYYDLCPF--DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 P+ V+KA+L + + P D + + +R +G P+ ++ Sbjct: 274 PMTKRVKKALLTLRNQVIKEFGFLPETDDHEAFLFINTYRKNKGIPIRDRTVNGASHRIE 333 Query: 252 RYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + LP T H RH+FA G L I+ LGH +STTQ+Y +++ Sbjct: 334 KRANLP-HITVHDGRHTFAARTRQAGIPLEDIKDFLGHKDVSTTQVYAHIS 383 >gi|237744716|ref|ZP_04575197.1| conserved hypothetical protein [Fusobacterium sp. 7_1] gi|229431945|gb|EEO42157.1| conserved hypothetical protein [Fusobacterium sp. 7_1] Length = 329 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 58/249 (23%), Positives = 108/249 (43%), Gaps = 21/249 (8%) Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK----SFLKYLKKRKITTESNILNM 116 ++I+ ++ ++R ++ QK G+ S K ++ I+ SF +L++ +S + + Sbjct: 88 KSIKHITTNDLREYLDN--YQKEGNAS-KITIDNIRRIFSSFFAWLEEEDYILKSPVRRI 144 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 +K + +++ + DN R+ AI+ +L G+R+ E + L Sbjct: 145 HKVKTGTVVKETYSDEAMEIMRDNCR----------SLRDLAIIDILASTGMRVGELVKL 194 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 ++I + + GKGDK R V + K L Y D N + + L + K Sbjct: 195 NIEDIDFEGRECVVFGKGDKERKV-YFDARTKIHLHNYLKTRDDDNSALFVSLLKP--HK 251 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 L + +RQL R L + H R + AT + G + +Q +LGH ++ TT Sbjct: 252 RLQISGVEIMLRQLGRKLNIT-KVHPHKFRRTLATKAIDKGMPIEQVQQLLGHQKIDTTL 310 Query: 297 IYTNVNSKN 305 Y V+ N Sbjct: 311 QYAMVSQNN 319 >gi|148543941|ref|YP_001271311.1| phage integrase family protein [Lactobacillus reuteri DSM 20016] gi|184153337|ref|YP_001841678.1| phage integrase [Lactobacillus reuteri JCM 1112] gi|227364850|ref|ZP_03848897.1| phage integrase family protein [Lactobacillus reuteri MM2-3] gi|325682524|ref|ZP_08162041.1| phage integrase family site-specific recombinase [Lactobacillus reuteri MM4-1A] gi|148530975|gb|ABQ82974.1| phage integrase family protein [Lactobacillus reuteri DSM 20016] gi|183224681|dbj|BAG25198.1| phage integrase [Lactobacillus reuteri JCM 1112] gi|227070113|gb|EEI08489.1| phage integrase family protein [Lactobacillus reuteri MM2-3] gi|324978363|gb|EGC15313.1| phage integrase family site-specific recombinase [Lactobacillus reuteri MM4-1A] Length = 386 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 2/61 (3%) Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 GKP+ P + Y + + LG P + H+LRH+ AT LL G + +Q LGH +++T Sbjct: 303 GKPVTPNSIKYYASTVTKELGFPFN--FHSLRHTHATMLLEAGASAKEVQVRLGHNKIAT 360 Query: 295 T 295 T Sbjct: 361 T 361 >gi|188495542|ref|ZP_03002812.1| Int [Escherichia coli 53638] gi|188490741|gb|EDU65844.1| Int [Escherichia coli 53638] Length = 327 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 1/60 (1%) Query: 243 FQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 ++++ LRR +P + H LRH+FA+H + NGG++ ++Q ILGH + T Y ++ Sbjct: 247 YEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 306 >gi|116625838|ref|YP_827994.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116229000|gb|ABJ87709.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 311 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 5/154 (3%) Query: 155 RNSAILYLLYGCGLRISE--ALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLLPSVRKAIL 211 R+ A+L L+ GCGLR E AL L +D S + + K IR VP+ V+ A+ Sbjct: 146 RDRAMLALMLGCGLRRGEIAALRLDHLQQREDHSVIADLVDKAAHIRTVPVPGWVKAAVD 205 Query: 212 EYYDLCPF-DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 E+ D L + + G + V ++ G+ + H R + A Sbjct: 206 EWVTSAAITDGRLFRCVSRKESVWGSGITEKVIWHVVKAAAAAAGIA-KLSLHDCRRTCA 264 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + GG+L IQ +LGH + TT+ Y + Sbjct: 265 RLCHAAGGELEQIQFLLGHVSVETTERYLGCKQR 298 >gi|224027002|ref|ZP_03645368.1| hypothetical protein BACCOPRO_03761 [Bacteroides coprophilus DSM 18228] gi|224020238|gb|EEF78236.1| hypothetical protein BACCOPRO_03761 [Bacteroides coprophilus DSM 18228] Length = 409 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 70/152 (46%), Gaps = 24/152 (15%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQST---LRIQGKGDKIRI-VPLLPSVRKAILEYYD 215 L+ C G ++ +S+T +N+ D+ L+ K +K+ V LLP A+LE Y Sbjct: 253 FLFACYTGTAYADTVSITEENLFRDEEGSLWLKYHRKKNKMLARVKLLPEAL-AMLEKYK 311 Query: 216 LCPFDLNLNIQLPL--FRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 D LP FR +RG ++ LR G+ + H RHSFA+ + Sbjct: 312 ----DPTRPTLLPPQEFRVLRGN----------MKSLRVLSGVSMDLVYHVGRHSFASLV 357 Query: 274 -LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 L G + +I +LGH + TTQIY V K Sbjct: 358 TLEEGVPIETISRMLGHNNIQTTQIYARVTPK 389 >gi|164521191|gb|ABY60457.1| phage integrase [Burkholderia andropogonis] Length = 290 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 64/266 (24%), Positives = 103/266 (38%), Gaps = 35/266 (13%) Query: 60 IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL 119 + R + E R F + RS SLS + + ++L +++ + L Sbjct: 12 VSPPRPRTSPEWRPFAGG-----LSARSAAHSLSVLGALFRWLIEQRYVFANPFAG---L 63 Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHET-----KWIDARNSAILYLL---YGCGLRIS 171 K + P L+ +A + + L+ T + W A + ++L Y GLR S Sbjct: 64 KVRGAAPALLDTSRAFSEGEWALVRTVADGLEWSYGWEPAAAQRLRFVLDFAYATGLRAS 123 Query: 172 EALSLTPQNI---MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY---DLCPFDLNLNI 225 E + T I D+ L + GKG + V L P R A+ Y L Sbjct: 124 ELVHATLGAIKIDASDERWLHVIGKGARASRVTLPPLARVALDRYLMQRGLPTTPAKWEP 183 Query: 226 QLPLFRGIRGKP-LNPG----VFQRYIRQLRRYLGLPLSTTA--------HTLRHSFATH 272 PL + G+ +N V +R+ +G A H +RH+ ATH Sbjct: 184 VTPLVASLAGEAGINRARLWVVMKRFFATAAEVIGEGSPAVAETLRRASPHWMRHTHATH 243 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIY 298 L G +L +++ L H LSTT +Y Sbjct: 244 ALQGGAELTAVRDNLRHASLSTTSMY 269 >gi|16132134|ref|NP_418733.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli str. K-12 substr. MG1655] gi|24115412|ref|NP_709922.1| tyrosine recombinase [Shigella flexneri 2a str. 301] gi|26251200|ref|NP_757240.1| tyrosine recombinase [Escherichia coli CFT073] gi|30065432|ref|NP_839603.1| tyrosine recombinase [Shigella flexneri 2a str. 2457T] gi|89111025|ref|AP_004805.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli str. K-12 substr. W3110] gi|157163757|ref|YP_001461075.1| tyrosine recombinase [Escherichia coli HS] gi|170682577|ref|YP_001746750.1| tyrosine recombinase [Escherichia coli SMS-3-5] gi|191167181|ref|ZP_03029001.1| type 1 fimbriae regulatory protein FimE [Escherichia coli B7A] gi|193063696|ref|ZP_03044784.1| type 1 fimbriae regulatory protein FimE [Escherichia coli E22] gi|193070101|ref|ZP_03051047.1| type 1 fimbriae regulatory protein FimE [Escherichia coli E110019] gi|194426551|ref|ZP_03059105.1| type 1 fimbriae regulatory protein FimE [Escherichia coli B171] gi|209921777|ref|YP_002295861.1| tyrosine recombinase [Escherichia coli SE11] gi|218556844|ref|YP_002389758.1| tyrosine recombinase [Escherichia coli IAI1] gi|218561489|ref|YP_002394402.1| tyrosine recombinase [Escherichia coli S88] gi|218703011|ref|YP_002410640.1| tyrosine recombinase [Escherichia coli IAI39] gi|218707980|ref|YP_002415499.1| tyrosine recombinase [Escherichia coli UMN026] gi|237704054|ref|ZP_04534535.1| tyrosine recombinase [Escherichia sp. 3_2_53FAA] gi|253775069|ref|YP_003037900.1| tyrosine recombinase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254164234|ref|YP_003047344.1| tyrosine recombinase [Escherichia coli B str. REL606] gi|256019941|ref|ZP_05433806.1| tyrosine recombinase [Shigella sp. D9] gi|256025242|ref|ZP_05439107.1| tyrosine recombinase [Escherichia sp. 4_1_40B] gi|260847129|ref|YP_003224907.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli O103:H2 str. 12009] gi|260858481|ref|YP_003232372.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli O26:H11 str. 11368] gi|260871033|ref|YP_003237435.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli O111:H- str. 11128] gi|293402970|ref|ZP_06647067.1| tyrosine recombinase [Escherichia coli FVEC1412] gi|293407997|ref|ZP_06651837.1| conserved hypothetical protein [Escherichia coli B354] gi|293417777|ref|ZP_06660399.1| type 1 fimbriae regulatory protein fimE [Escherichia coli B185] gi|293476576|ref|ZP_06664984.1| type 1 fimbriae regulatory protein fimE [Escherichia coli B088] gi|298378498|ref|ZP_06988382.1| type 1 fimbriae regulatory protein fimE [Escherichia coli FVEC1302] gi|301019652|ref|ZP_07183809.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 196-1] gi|306815503|ref|ZP_07449652.1| tyrosine recombinase [Escherichia coli NC101] gi|307312916|ref|ZP_07592544.1| integrase family protein [Escherichia coli W] gi|312966032|ref|ZP_07780258.1| phage integrase family protein [Escherichia coli 2362-75] gi|312969991|ref|ZP_07784173.1| phage integrase family protein [Escherichia coli 1827-70] gi|331650434|ref|ZP_08351506.1| type 1 fimbriae regulatory protein FimE [Escherichia coli M605] gi|331650787|ref|ZP_08351815.1| type 1 fimbriae regulatory protein FimE [Escherichia coli M718] gi|331660932|ref|ZP_08361864.1| type 1 fimbriae regulatory protein FimE [Escherichia coli TA206] gi|331665963|ref|ZP_08366857.1| type 1 fimbriae regulatory protein FimE [Escherichia coli TA143] gi|331666126|ref|ZP_08367007.1| type 1 fimbriae regulatory protein FimE [Escherichia coli TA271] gi|331671426|ref|ZP_08372224.1| type 1 fimbriae regulatory protein FimE [Escherichia coli TA280] gi|331680416|ref|ZP_08381075.1| type 1 fimbriae regulatory protein FimE [Escherichia coli H591] gi|332281083|ref|ZP_08393496.1| tyrosine recombinase/inversion of on/off regulator of fimA [Shigella sp. D9] gi|83286952|sp|P0ADH8|FIME_ECOL6 RecName: Full=Type 1 fimbriae regulatory protein fimE gi|83286953|sp|P0ADH7|FIME_ECOLI RecName: Full=Type 1 fimbriae regulatory protein fimE gi|83286954|sp|P0ADH9|FIME_SHIFL RecName: Full=Type 1 fimbriae regulatory protein fimE gi|26111632|gb|AAN83814.1|AE016771_325 Type 1 fimbriae Regulatory protein fimE [Escherichia coli CFT073] gi|537154|gb|AAA97209.1| recombinase involved in phase variation [Escherichia coli str. K-12 substr. MG1655] gi|581086|emb|CAA27561.1| fimE [Escherichia coli] gi|1790768|gb|AAC77269.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli str. K-12 substr. MG1655] gi|24054724|gb|AAN45629.1| recombinase; regulator for fimA [Shigella flexneri 2a str. 301] gi|30043696|gb|AAP19415.1| recombinase; regulator for fimA [Shigella flexneri 2a str. 2457T] gi|85677056|dbj|BAE78306.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli str. K12 substr. W3110] gi|157069437|gb|ABV08692.1| type 1 fimbriae regulatory protein FimE [Escherichia coli HS] gi|170520295|gb|ACB18473.1| type 1 fimbriae regulatory protein FimE [Escherichia coli SMS-3-5] gi|190902838|gb|EDV62567.1| type 1 fimbriae regulatory protein FimE [Escherichia coli B7A] gi|192930683|gb|EDV83289.1| type 1 fimbriae regulatory protein FimE [Escherichia coli E22] gi|192956554|gb|EDV87011.1| type 1 fimbriae regulatory protein FimE [Escherichia coli E110019] gi|194415290|gb|EDX31558.1| type 1 fimbriae regulatory protein FimE [Escherichia coli B171] gi|209915036|dbj|BAG80110.1| type-1 fimbriae regulator FimE [Escherichia coli SE11] gi|218363613|emb|CAR01270.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli IAI1] gi|218368258|emb|CAR06075.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli S88] gi|218372997|emb|CAR20882.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli IAI39] gi|218435077|emb|CAR16031.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli UMN026] gi|226901966|gb|EEH88225.1| tyrosine recombinase [Escherichia sp. 3_2_53FAA] gi|242379830|emb|CAQ34661.1| regulator for fimA [Escherichia coli BL21(DE3)] gi|253326113|gb|ACT30715.1| integrase family protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253976137|gb|ACT41808.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli B str. REL606] gi|253980293|gb|ACT45963.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli BL21(DE3)] gi|257757130|dbj|BAI28632.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli O26:H11 str. 11368] gi|257762276|dbj|BAI33773.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli O103:H2 str. 12009] gi|257767389|dbj|BAI38884.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli O111:H- str. 11128] gi|281181464|dbj|BAI57794.1| type 1 fimbriae regulator [Escherichia coli SE15] gi|281603521|gb|ADA76505.1| Type 1 fimbriae regulatory protein fimE [Shigella flexneri 2002017] gi|291321029|gb|EFE60471.1| type 1 fimbriae regulatory protein fimE [Escherichia coli B088] gi|291429885|gb|EFF02899.1| tyrosine recombinase [Escherichia coli FVEC1412] gi|291430495|gb|EFF03493.1| type 1 fimbriae regulatory protein fimE [Escherichia coli B185] gi|291472248|gb|EFF14730.1| conserved hypothetical protein [Escherichia coli B354] gi|298280832|gb|EFI22333.1| type 1 fimbriae regulatory protein fimE [Escherichia coli FVEC1302] gi|299882113|gb|EFI90324.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 196-1] gi|305851165|gb|EFM51620.1| tyrosine recombinase [Escherichia coli NC101] gi|306907084|gb|EFN37591.1| integrase family protein [Escherichia coli W] gi|310337489|gb|EFQ02600.1| phage integrase family protein [Escherichia coli 1827-70] gi|312289275|gb|EFR17169.1| phage integrase family protein [Escherichia coli 2362-75] gi|313649987|gb|EFS14405.1| phage integrase family protein [Shigella flexneri 2a str. 2457T] gi|315063615|gb|ADT77942.1| tyrosine recombinase/inversion of on/off regulator of FimA [Escherichia coli W] gi|320200578|gb|EFW75164.1| type 1 fimbriae regulatory protein FimE [Escherichia coli EC4100B] gi|323157662|gb|EFZ43768.1| phage integrase family protein [Escherichia coli EPECa14] gi|323163313|gb|EFZ49141.1| phage integrase family protein [Escherichia coli E128010] gi|323182028|gb|EFZ67439.1| phage integrase family protein [Escherichia coli 1357] gi|323189837|gb|EFZ75115.1| phage integrase family protein [Escherichia coli RN587/1] gi|323380304|gb|ADX52572.1| integrase family protein [Escherichia coli KO11] gi|323935245|gb|EGB31598.1| phage integrase [Escherichia coli E1520] gi|323939682|gb|EGB35886.1| phage integrase [Escherichia coli E482] gi|323945829|gb|EGB41874.1| phage integrase [Escherichia coli H120] gi|323950597|gb|EGB46475.1| phage integrase [Escherichia coli H252] gi|323955384|gb|EGB51154.1| phage integrase [Escherichia coli H263] gi|323960179|gb|EGB55822.1| phage integrase [Escherichia coli H489] gi|323975621|gb|EGB70718.1| phage integrase [Escherichia coli TW10509] gi|324118516|gb|EGC12409.1| phage integrase [Escherichia coli E1167] gi|331040828|gb|EGI12986.1| type 1 fimbriae regulatory protein FimE [Escherichia coli M605] gi|331051241|gb|EGI23290.1| type 1 fimbriae regulatory protein FimE [Escherichia coli M718] gi|331051974|gb|EGI24013.1| type 1 fimbriae regulatory protein FimE [Escherichia coli TA206] gi|331057014|gb|EGI29008.1| type 1 fimbriae regulatory protein FimE [Escherichia coli TA143] gi|331066337|gb|EGI38214.1| type 1 fimbriae regulatory protein FimE [Escherichia coli TA271] gi|331071271|gb|EGI42628.1| type 1 fimbriae regulatory protein FimE [Escherichia coli TA280] gi|331071879|gb|EGI43215.1| type 1 fimbriae regulatory protein FimE [Escherichia coli H591] gi|332103435|gb|EGJ06781.1| tyrosine recombinase/inversion of on/off regulator of fimA [Shigella sp. D9] gi|332750457|gb|EGJ80867.1| phage integrase family protein [Shigella flexneri 2747-71] gi|332752103|gb|EGJ82495.1| phage integrase family protein [Shigella flexneri K-671] gi|332764696|gb|EGJ94925.1| phage integrase family protein [Shigella flexneri 2930-71] gi|333010405|gb|EGK29838.1| phage integrase family protein [Shigella flexneri VA-6] gi|333011280|gb|EGK30694.1| phage integrase family protein [Shigella flexneri K-272] gi|333012078|gb|EGK31461.1| phage integrase family protein [Shigella flexneri K-304] gi|333012176|gb|EGK31558.1| phage integrase family protein [Shigella flexneri K-227] Length = 198 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 66/158 (41%), Gaps = 2/158 (1%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILE 212 AR+ ++ L Y G+RISE L L Q++ ++ + I+ + V PL R+A+ Sbjct: 26 ARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVER 85 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 + + +F RG L+ R IR G T H LRH+ Sbjct: 86 WTQERANWKGADRTDAIFISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGYE 145 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN-GGDW 309 L G D R IQ LGH + T YT N+ G W Sbjct: 146 LAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLW 183 >gi|330814554|ref|YP_004362729.1| phage integrase family protein [Burkholderia gladioli BSR3] gi|327374546|gb|AEA65897.1| phage integrase family protein [Burkholderia gladioli BSR3] Length = 559 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 77/314 (24%), Positives = 124/314 (39%), Gaps = 62/314 (19%) Query: 27 IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 +ERG LS LT + D + FL T + R S E R F T + Sbjct: 248 VERGKALSSLTSE----DATAYRAFLRHPTRRARWVAPARPRSSPEWRPF-----TGALS 298 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNSL--PRALNEKQA---LTL 137 S+ +LS + + ++L +++ ++ L +R +++ L RA + T+ Sbjct: 299 PDSIAYALSVLSAMFRWLIEQRYVLANSFAGLKVRGAQRNGELDISRAFTAGEWELIRTI 358 Query: 138 VDNVLLHTSHETKWIDARNSAILYLL---YGCGLRISEALSLTPQNI---MDDQSTLRIQ 191 D L SH W + ++L Y GLR E + +T I + L + Sbjct: 359 ADG--LEWSH--GWTVPAAQRLRFVLDFGYATGLRAGELVGVTLGGIETGARGERWLHLT 414 Query: 192 GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP---------GV 242 GKG K V L P A+ +Y + LP+ R +P P G+ Sbjct: 415 GKGAKAGKVVLPPLATHALDQYL--------VQRGLPVT-SARWQPDTPLLGHLDAPGGI 465 Query: 243 FQRYIRQ-LRRYLGLPLST---------------TAHTLRHSFATHLLSNGGDLRSIQSI 286 +R+ LRR+ T H +RH+ ATH L+NG L +++ Sbjct: 466 TTPRLREVLRRFFHAAADAIEVDHPALADKLRRATPHWMRHTHATHALANGATLTTVRDN 525 Query: 287 LGHFRLSTTQIYTN 300 L H ++TT IY + Sbjct: 526 LRHASITTTSIYLD 539 >gi|301311429|ref|ZP_07217356.1| integrase [Bacteroides sp. 20_3] gi|300830515|gb|EFK61158.1| integrase [Bacteroides sp. 20_3] Length = 401 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 19/162 (11%) Query: 162 LLYGC--GLRISEALSLTP-QNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYD 215 ++ C G+ ++ LT Q + D +S+ I K + +PLLP + + +Y Sbjct: 249 FVFSCFTGISYADMCKLTKDQIVFDSKSSGYIHFYRTKTNHPAFIPLLPQSMEILDKY-- 306 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA-THLL 274 +N N +F + + N Y+++L G+ T H RHSFA T L Sbjct: 307 -----INQNNSGKIFPMLSNQKTNA-----YLKELADICGIKKKLTYHVARHSFAVTICL 356 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 NG + ++ ILGH L TQ Y + K + M + D+ Sbjct: 357 ENGIPIETLSKILGHTNLRVTQAYAKITHKKVMNDMQALKDR 398 >gi|299142623|ref|ZP_07035753.1| integrase [Prevotella oris C735] gi|298575838|gb|EFI47714.1| integrase [Prevotella oris C735] Length = 415 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 23/151 (15%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYY-- 214 ++ C GL IS+ +L +NI+ ++ L I+G+ K + V +LP AI+E Y Sbjct: 268 FVFSCFSGLAISDVRNLREENIVLEEGELCIKGRRMKTKTPYRVQVLPPA-WAIMERYRG 326 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL- 273 F ++ + G+ YI+ R +G+ T H RH+FA+ + Sbjct: 327 KRAGFVFDVPTSDIILNGMH-----------YIQ---RNIGMETPLTFHMARHTFASLIT 372 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 LS G + ++ +LGH L TTQ+Y V+S+ Sbjct: 373 LSAGVPIETVSRMLGHTNLRTTQVYAAVSSE 403 >gi|238025620|ref|YP_002909852.1| Putative site-specific recombinase [Burkholderia glumae BGR1] gi|237880285|gb|ACR32616.1| Putative site-specific recombinase [Burkholderia glumae BGR1] Length = 223 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/200 (25%), Positives = 85/200 (42%), Gaps = 38/200 (19%) Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-------GKG 194 LL + T R+S +L L CG+R+SE + Q+++ +R + KG Sbjct: 15 LLAVTSATSRHPERDSLVLLLGITCGMRVSEIAQIEIQDVLFPSGAIRSEVSLRAAITKG 74 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPL--FRGIR------------------ 234 + R V L + LE Y + I+L +RG+ Sbjct: 75 CRQRCVYLTHPKTVSALECYLGHRIAHGIGIELTAEHYRGLAPSSCLVLASKGRKFAMNT 134 Query: 235 -------GKPLNPGV---FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284 G+P++ Q +I +L R G+ L ++H+ R SFA++L+ G D+ ++Q Sbjct: 135 KRRINEAGEPVDYSACDSLQSHITKLYRDAGI-LGGSSHSGRRSFASNLIEQGHDIETVQ 193 Query: 285 SILGHFRLSTTQIYTNVNSK 304 +LGH L Y +V+ K Sbjct: 194 QLLGHAELDHVLPYLDVSDK 213 >gi|257064113|ref|YP_003143785.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM 20476] gi|256791766|gb|ACV22436.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM 20476] Length = 451 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 +L + L P+ RG+ +N F+R+ R R G H LRHS AT LL Sbjct: 310 ELAKLAIKLGDATPVCCSERGEWVNLANFERWWRSFRDDAGFE-GLRFHELRHSQATLLL 368 Query: 275 SNGGDLRSIQSILGH 289 +NG DL+++Q +GH Sbjct: 369 ANGTDLKTVQDRMGH 383 >gi|228477373|ref|ZP_04062009.1| tyrosine recombinase XerC [Streptococcus salivarius SK126] gi|228250808|gb|EEK09996.1| tyrosine recombinase XerC [Streptococcus salivarius SK126] Length = 356 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 67/284 (23%), Positives = 118/284 (41%), Gaps = 45/284 (15%) Query: 58 ITIQTIRQLSYTEIRAFI----------SKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI 107 I I+T+ L+ ++ +F+ + + Q + ++ R+LS + S KYL + Sbjct: 66 IDIKTLENLTKKDMESFVLYLRERPSLNTYSKKQGVSQTTINRTLSALSSLYKYLTEEVE 125 Query: 108 TTESNILNMRNLKKSNSL--------PRALNEKQALTLVDNVL-----LHTSHETKWID- 153 + RN+ K S RA N KQ L L D + + +E K + Sbjct: 126 GPDGEPYFYRNVMKKVSTKKKKETLAARAENIKQKLFLGDETMEFLDYVENEYEVKLSNR 185 Query: 154 ---------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 R+ AI+ LL G+R+SEA++L ++I + + KG K V + Sbjct: 186 AKSSFYKNKERDLAIIALLLASGVRLSEAVNLDLKDINLKMMVIDVTRKGGKRDSVNV-A 244 Query: 205 SVRKAILEYYDLCPFD-------LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 S K LE Y L D ++ + L +RG+ + ++ ++ + + + Sbjct: 245 SFAKPYLETY-LSIRDKRYKAEKQDVALFLTEYRGVPNR-IDASSIEKMVAKYSQ--DFK 300 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T H LRH+ AT L + LGH T +YT++ Sbjct: 301 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHI 344 >gi|269955405|ref|YP_003325194.1| integrase family protein [Xylanimonas cellulosilytica DSM 15894] gi|269304086|gb|ACZ29636.1| integrase family protein [Xylanimonas cellulosilytica DSM 15894] Length = 447 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 11/115 (9%) Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK------PLNPGVFQRYIRQLR 251 R++PL P + A+ E+ +CP D + P R RGK P P + ++ Sbjct: 310 RVIPLTPWMEAALREWQPMCP-DNPWGLVWPAVRLSRGKTTPRVLPQTPNRDREAWEAIQ 368 Query: 252 RYLGLPLSTTA----HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 LG+ + H RH+ A LL G D +++I+GH + T++ Y + N Sbjct: 369 AALGITHESGRRYLLHEARHTTANLLLEAGVDPEVVKAIMGHSSIVTSRGYMHAN 423 >gi|186472981|ref|YP_001860323.1| integrase family protein [Burkholderia phymatum STM815] gi|184195313|gb|ACC73277.1| integrase family protein [Burkholderia phymatum STM815] Length = 354 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 67/307 (21%), Positives = 128/307 (41%), Gaps = 37/307 (12%) Query: 7 PEIVSFELL-KERQNWLQN--LEIERGLSKLTLQ--SYECDTRQFLIFLAFYTEEKITIQ 61 P I +L +ERQ+WL + + L+ + S E Q+ +FL + + + Sbjct: 14 PAIAEADLFERERQDWLIDPRAAFDAWLAGQHFRNSSAEVYRAQWGLFLEWLQARQKNLV 73 Query: 62 TIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITT-----------E 110 T+ + E A +S R+ Q+ R L I+ L ++++ ++ + E Sbjct: 74 TVDMRAIAEFVAGLSIRKPQR------ARYLRLIERVLDHVREIELASTNPARFIAQDGE 127 Query: 111 SNILNMRNLKKSNSLPRALNEKQAL-TLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169 + N R+ + + L ++ E+ AL + + + + S +W + R+ A++ + G G++ Sbjct: 128 AEWRNARDNEPTGFL--SVGERSALIDYLFSPVTNLSAAQRWRERRDRALIAVFLGGGIK 185 Query: 170 ISEALSLTPQNIMDDQSTLRIQGKGD----KIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225 EA +L+ + + I+ + R+ P SV A L+ L Sbjct: 186 TGEARTLSVSCMTSGSPWVVIEAANPLFTRRTRLAPFAVSVLGAWLDERKQA----ELPG 241 Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA----HTLRHSFATHLLSNGGDLR 281 +L G+P++ R + L G S A HTLR+SFA L G ++ Sbjct: 242 ELVFPASPSGRPMHKATMLRAVDALVDAAGFGQSREARASPHTLRNSFAADLFERGVEVE 301 Query: 282 SIQSILG 288 + LG Sbjct: 302 VVGQWLG 308 >gi|5824355|emb|CAB54522.1| Int protein [Enterobacteria phage WPhi] Length = 326 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 1/60 (1%) Query: 243 FQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 ++++ LRR +P + H LRH+FA+H + NGG++ ++Q ILGH + T Y ++ Sbjct: 247 YEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 306 >gi|323438828|gb|EGA96566.1| hypothetical protein SAO11_2347 [Staphylococcus aureus O11] Length = 409 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 51/208 (24%), Positives = 84/208 (40%), Gaps = 32/208 (15%) Query: 132 KQALTLVDNVLLHTSHETKWIDARN----SAILYLLYGCGLRISEALSLTPQNIMDDQST 187 K+ L D ++ H H T+ RN A++ G+RI E L++ NI + T Sbjct: 192 KELLQCFDYLIKHKRHATR---KRNYEMVKALVEFQINNGMRIGELLAIKTDNINIENKT 248 Query: 188 LRIQGKGDKI--------------------RIVPLLPS----VRKAILEYYDLCPFDLNL 223 L I G + + R + L ++K +LE ++ Sbjct: 249 LEIDGTINWVTDTETGAFGVKETTKTSKSYRTIGLTTQSINLLKKLMLENKKENQWNAKF 308 Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283 + +F G P++ I++ + T HTLRH+ + L G +L++I Sbjct: 309 IDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTLAQLGINLKAI 368 Query: 284 QSILGHFRLSTT-QIYTNVNSKNGGDWM 310 Q+ +GH TT IYT+V K D M Sbjct: 369 QARVGHSDYKTTLDIYTHVTDKMAQDMM 396 >gi|168187849|ref|ZP_02622484.1| phage integrase [Clostridium botulinum C str. Eklund] gi|169294306|gb|EDS76439.1| phage integrase [Clostridium botulinum C str. Eklund] Length = 397 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 9/112 (8%) Query: 197 IRIVPLLPSVRKAILEYYDLCPF------DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL 250 IR VP+ ++ + + EY DL N +F G PL+P R + + Sbjct: 265 IRTVPIPTNIMEKLKEYKQKHSVIKKENEDLYNNTDY-IFCDKLGNPLDPKRIPRNFKSV 323 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301 + GL H+LRH++AT L G ++++Q+++GH ++TT IYT+V Sbjct: 324 LKKAGLK-DIKFHSLRHTYATRLFEVGVPIKTVQTLMGHSDITTTMNIYTHV 374 >gi|288929355|ref|ZP_06423200.1| site-specific recombinase, phage integrase family [Prevotella sp. oral taxon 317 str. F0108] gi|288329457|gb|EFC68043.1| site-specific recombinase, phage integrase family [Prevotella sp. oral taxon 317 str. F0108] Length = 308 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 66/156 (42%), Gaps = 25/156 (16%) Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLR----------IQGKGDKIRIVPLLPSVRKA 209 +Y+ GLRI E L +I D T+ I+G+ +V P + + Sbjct: 133 IYISLTTGLRIGEICGLMWADINTDTGTITVNRTIERIYIIEGERKHTELVINTPKTKNS 192 Query: 210 ILEYYDLCPFDLNLNIQL-PLFRGIRG---------KPLNPGVFQRYIRQLRRYLGLPLS 259 E P + L + PL + + KP P ++ Y +L +L +P Sbjct: 193 CREI----PMNKELLAMVKPLKKVVNASFYVLTNEEKPTEPRTYRNYFHRLMGHLDIP-R 247 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 H LRHSFAT + + D +++ +LGH ++TT Sbjct: 248 LKYHGLRHSFATRCIESNCDYKTVSVLLGHANITTT 283 >gi|167838354|ref|ZP_02465213.1| putative bacteriophage integrase [Burkholderia thailandensis MSMB43] Length = 284 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 57/251 (22%), Positives = 107/251 (42%), Gaps = 17/251 (6%) Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE-SNILNMRNL 119 + +R+L ++R ++S R + + ++KR L + + + +++ E +N + L Sbjct: 36 RDLRKLKRGDVRRYVSARLADGVCESTVKRELRLLSAAINFVRTEHDYPELANPVQSLGL 95 Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 S R ++ +A+ L+ L + RN L L GC R +E L+L Sbjct: 96 DGGESRVRWISRSEAVELI----LAAGAAARQPHLRNFVRLALSTGC--RKNELLALEWH 149 Query: 180 NIMDDQSTLRIQG---KGDKIRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRG 235 + ++S R++ K K R+VPL A+ + D + G R Sbjct: 150 RVDFERSHFRLECEHTKNGKRRLVPLNSGALSALRDQRDWVARHCAGSEWVFASSSGRRV 209 Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 L G R G+ H LRH+FA+ L+ G L ++ +LGH ++ T Sbjct: 210 SNLQKGFVAACARA-----GIE-DFRIHDLRHTFASWLVMEGVSLYVVKDLLGHSSITVT 263 Query: 296 QIYTNVNSKNG 306 + Y +++ +G Sbjct: 264 ERYAHLSPDHG 274 >gi|37515379|emb|CAE48333.1| IntI1 DNA integrase [Pseudomonas aeruginosa] gi|46092528|dbj|BAD14384.1| integrase [Pseudomonas aeruginosa] Length = 296 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 68/158 (43%), Gaps = 37/158 (23%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIR--IVP--LLPSVR--------- 207 LLYG G+RISE L L +++ D T+ + +GKG K R ++P L PS+R Sbjct: 139 LLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAW 198 Query: 208 -----------------------KAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ 244 +A + F + + P +R + FQ Sbjct: 199 WLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258 Query: 245 RYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRS 282 R ++ G+ T HTLRHSFAT LL +G D+R+ Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRT 296 >gi|221141217|ref|ZP_03565710.1| pathogenicity island protein, integrase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|269940391|emb|CBI48768.1| integrase [Staphylococcus aureus subsp. aureus TW20] gi|302750718|gb|ADL64895.1| pathogenicity island protein, integrase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|329313555|gb|AEB87968.1| Pathogenicity island protein, integrase [Staphylococcus aureus subsp. aureus T0131] Length = 406 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 30/171 (17%) Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGK---------GDKIRIVPLLPS------------ 205 G+RI E L++ ++I D +L I G G ++ S Sbjct: 230 GMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSC 289 Query: 206 --VRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 ++KAILE ++ LN N +F +G P+ F + +R+ + +G+ Sbjct: 290 EILKKAILENKKDSKWNDGYLNRNF---VFTNHKGNPMQTERFNKILREAAKDVGIDKEV 346 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310 ++H LRHS + L G L++I +GH TT IY++V + D M Sbjct: 347 SSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMM 397 >gi|94442228|dbj|BAE93613.1| integron integrase [uncultured bacterium] Length = 211 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 84/192 (43%), Gaps = 48/192 (25%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 K+ LP L + + TL++N + N I LLYG G+R E L L Sbjct: 31 KQPRHLPVVLTQAEVGTLLEN-----------MKGVNGLIARLLYGTGMRKMECLRLRIM 79 Query: 180 NIMDDQSTLRIQ-GKG--DKIRIVP--LLPSVRKAILEYYDLCPFDLNLN---IQLPLF- 230 ++ D S + ++ GKG D+I ++P L+ S+R + L +D++ ++LP Sbjct: 80 DVDFDYSQIHVRSGKGGKDRIALLPDCLVASLRSQLEHTEKLHKYDIDEGYGEVELPFAL 139 Query: 231 --------RGIRGKPLNP----------GVFQRY----------IRQLRRYLGLPLSTTA 262 R + + + P GV +R+ IRQ + + + Sbjct: 140 ERKYPNAGREWKWQYVFPSTKRSVDKRTGVIRRHHWHDTNVSRAIRQSVCFSRISKHVSV 199 Query: 263 HTLRHSFATHLL 274 HTLRHSFATHLL Sbjct: 200 HTLRHSFATHLL 211 >gi|262039474|ref|ZP_06012777.1| site-specific recombinase, phage integrase family [Leptotrichia goodfellowii F0264] gi|261746503|gb|EEY34039.1| site-specific recombinase, phage integrase family [Leptotrichia goodfellowii F0264] Length = 323 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 79/190 (41%), Gaps = 43/190 (22%) Query: 157 SAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK-----------GDKIRIVPLLPS 205 S + L GLRI E L ++I D Q+ + I K G K I+ +P Sbjct: 145 SVGILLAMSIGLRIGELCGLKWKDI-DLQNEILIVNKTLQRIYFRVKKGGKSEIIISVPK 203 Query: 206 VRKAILEYYDLCPFDLNLNIQLPL---------FRGIRGKPLNPGVFQRYIRQLRRYLGL 256 + + Y + P NL L + F K + P ++RY ++ L + Sbjct: 204 SKNS----YRIIPLSRNLVNFLKILQIDDKSNYFLSNNEKYIEPKTYRRYYYKILEKLKI 259 Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 H+LRH+FAT + +G D +++ ILGH ++TT +E+Y Sbjct: 260 R-KLKFHSLRHTFATTAIESGIDYKTVSEILGHASVNTT---------------LELY-- 301 Query: 317 THPSITQKDK 326 THP I K K Sbjct: 302 THPKIEHKKK 311 >gi|255014895|ref|ZP_05287021.1| integrase [Bacteroides sp. 2_1_7] Length = 311 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 33/56 (58%) Query: 243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 F R +R L R G+ L T++T+RHSFA+ L + I +LGH + TTQIY Sbjct: 228 FNRDLRSLARSTGVTLPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIY 283 >gi|71274497|ref|ZP_00650785.1| Phage integrase [Xylella fastidiosa Dixon] gi|71900326|ref|ZP_00682461.1| Phage integrase [Xylella fastidiosa Ann-1] gi|71164229|gb|EAO13943.1| Phage integrase [Xylella fastidiosa Dixon] gi|71729901|gb|EAO31997.1| Phage integrase [Xylella fastidiosa Ann-1] Length = 387 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 70/258 (27%), Positives = 115/258 (44%), Gaps = 35/258 (13%) Query: 62 TIRQLSYTEIRAFISKRRTQKIGDRS---LKRSLSGIKSFL-KYLKKRKITTESNILNMR 117 T+ +++ R FI +T RS +KR L+ K+ L + K+ +IT+ I+ + Sbjct: 107 TVSEITPPRQREFIKWLQTGSDTPRSDGYVKRILTVGKAALNRAYKEGEITSVPYIIPGK 166 Query: 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 + + + L+ +++ L + L HE + L L YG R L L Sbjct: 167 DAPPRDQV---LSLQESAALWEAATL--PHERMY--------LALAYGTLARPEAILGLR 213 Query: 178 PQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234 + D Q L Q G+ + P++P I ++ L P+ L+++ PL Sbjct: 214 -REFADIQRRLLTQNPPGRKQTKKFRPVVP-----ICDF--LLPWILSVD-SGPLVH-WH 263 Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 GKP+ F+ R LR + GLP T +RH+ AT L S G + IQ +LGH Sbjct: 264 GKPI--ASFKTAWRALRTHAGLPKDTVPKVIRHTMATELRSAGVSAQDIQGMLGHRAYGG 321 Query: 295 TQIYTNVNSKNGGDWMME 312 T T+V +K D+M + Sbjct: 322 T---TDVYAKYRPDYMAD 336 >gi|329667143|gb|AEB93091.1| putative prophage integrase [Lactobacillus johnsonii DPC 6026] Length = 391 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 40/182 (21%) Query: 162 LLYGCGLRISEALSLTPQNI----------------MDDQSTLRIQGKGDKIRIVPLLPS 205 LL GLR SEAL+LT Q+I +D+++ ++ RI+P+ S Sbjct: 205 LLSATGLRKSEALALTWQDIDLKAGTLSVNKTLAYGLDNKTIIQPPKSPKSKRILPISDS 264 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR--------RY---- 253 +++ +++Y I LF I+G L ++++ + +Y Sbjct: 265 LKEVLIDYKQKQKI-----ISNKLFHTIKGTYLKMSKPDQWLKSIYAKDHEEKVKYAKTH 319 Query: 254 -LGLPLST----TAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTT-QIYTNVNSKNG 306 L P T H RH+FAT L++ +++Q +LGH + T IYT+VN+KN Sbjct: 320 NLKEPQPDLRHITVHGFRHTFATLLIAETNVKPKTVQMLLGHENIQMTLDIYTHVNNKNK 379 Query: 307 GD 308 D Sbjct: 380 ED 381 >gi|323442575|gb|EGB00203.1| hypothetical protein SAO46_1495 [Staphylococcus aureus O46] Length = 409 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 51/208 (24%), Positives = 84/208 (40%), Gaps = 32/208 (15%) Query: 132 KQALTLVDNVLLHTSHETKWIDARN----SAILYLLYGCGLRISEALSLTPQNIMDDQST 187 K+ L D ++ H H T+ RN A++ G+RI E L++ NI + T Sbjct: 192 KELLQCFDYLIKHKRHATR---KRNYEMVKALVEFQINNGMRIGELLAIKTDNINIENKT 248 Query: 188 LRIQGKGDKI--------------------RIVPLLPS----VRKAILEYYDLCPFDLNL 223 L I G + + R + L ++K +LE ++ Sbjct: 249 LEIDGTINWVTDTETGAFGVKETTKTSKSYRTIGLTTQSINLLKKLMLENKKENQWNAKF 308 Query: 224 NIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283 + +F G P++ I++ + T HTLRH+ + L G +L++I Sbjct: 309 IDRGYIFTNTAGSPIDLNKVNNIIKEATDISSINKRVTTHTLRHTHISTLAQLGINLKAI 368 Query: 284 QSILGHFRLSTT-QIYTNVNSKNGGDWM 310 Q+ +GH TT IYT+V K D M Sbjct: 369 QARVGHSDYKTTLDIYTHVTDKMAQDMM 396 >gi|253689521|ref|YP_003018711.1| integrase family protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756099|gb|ACT14175.1| integrase family protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 352 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 23/143 (16%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 I+ + G R SEA LT + + T + KG K R VP+ + + E Sbjct: 201 IVKVCLATGARWSEAEGLTRSQLSPYKLTF-FKTKGKKNRTVPIPRWLHDELSE------ 253 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR-RYLGLPLSTTAHTLRHSFATHLLSNG 277 ++GK P +Q +++ L + L H LRH+FA+H + NG Sbjct: 254 --------------LQGKMFQP-CYQDFVKMLALTNIELIEGQNTHVLRHTFASHFMMNG 298 Query: 278 GDLRSIQSILGHFRLSTTQIYTN 300 G++ +Q ILGH + T Y + Sbjct: 299 GNILVLQRILGHANIRETMRYAH 321 >gi|229492422|ref|ZP_04386226.1| site-specific recombinase, phage integrase family protein [Rhodococcus erythropolis SK121] gi|229320651|gb|EEN86468.1| site-specific recombinase, phage integrase family protein [Rhodococcus erythropolis SK121] Length = 611 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Query: 121 KSNSLPRALNEKQA---LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 K LPR L++ A LT N+ D + +L G+R E L LT Sbjct: 325 KDKPLPRFLDDGAAAKFLTAARNL----------PDEFGRLAIEMLSRTGMRKGELLDLT 374 Query: 178 PQNIMDDQST--LRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234 +++ S LRI GK R VPL P ++ I + + P D + PL R Sbjct: 375 IDSVVQIGSAYWLRIPVGKLHNDRYVPLHPQLKTMIDTWLEHRP-DWQDS---PLLFTDR 430 Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 G+P+ + ++ G+ H LRH+ AT ++ G L +I ++LGH + Sbjct: 431 GRPIPGTRIDKAVQSAAAAAGIG-HVHPHQLRHTLATQAINRGMSLEAIAALLGHKTMEM 489 Query: 295 TQIYTNVNSKNGGD 308 T +Y + + D Sbjct: 490 TMVYARIADRTVAD 503 >gi|154501018|ref|ZP_02039056.1| hypothetical protein BACCAP_04705 [Bacteroides capillosus ATCC 29799] gi|150270042|gb|EDM97561.1| hypothetical protein BACCAP_04705 [Bacteroides capillosus ATCC 29799] Length = 381 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 17/156 (10%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR--------KAILEY 213 LL G GLR+ E L+L P++I +D S + + I++V P++ + + Sbjct: 201 LLLGSGLRVQELLALRPEDIAEDGSEICVN---KAIKMVDGKPTIGPPKSKRSCRTVPIP 257 Query: 214 YDLCPFDLNLNIQLP---LFRGIRGKPL-NPGVFQ-RYIRQLRRYLGLPLSTTAHTLRHS 268 D P+ + L ++ R L + G F+ +Y L+R G+ H RH+ Sbjct: 258 EDYRPYAVYLRTHGGKSYIWTSTRKSLLYSVGTFRNKYYAALKRVPGI-RKLGPHCCRHT 316 Query: 269 FATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + THL +N L I ++GH +STT Y +++S+ Sbjct: 317 YVTHLEANQVPLAEIARLVGHSTVSTTNRYLHISSE 352 >gi|2689564|gb|AAC28969.1| integrase [Staphylococcus aureus] Length = 406 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 30/171 (17%) Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGK---------GDKIRIVPLLPS------------ 205 G+RI E L++ ++I D +L I G G ++ S Sbjct: 230 GMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSC 289 Query: 206 --VRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 ++KAILE ++ LN N +F +G P+ F + +R+ + +G+ Sbjct: 290 EILKKAILENKKDSKWNDGYLNRNF---VFTNHKGNPMQTERFNKILREAAKDVGIDKEV 346 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310 ++H LRHS + L G L++I +GH TT IY++V + D M Sbjct: 347 SSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMM 397 >gi|94313439|ref|YP_586648.1| Tyrosine-based site-specific recombinase [Cupriavidus metallidurans CH34] gi|93357291|gb|ABF11379.1| Tyrosine-based site-specific recombinase [Cupriavidus metallidurans CH34] Length = 559 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 75/311 (24%), Positives = 119/311 (38%), Gaps = 58/311 (18%) Query: 27 IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 IERG LS LT + D + FL + + R T+ + F + Sbjct: 251 IERGRPLSSLTTE----DATAYRNFLRQPAPRERWVGPARPRGATDWKPF-----ADGLS 301 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNSL--PRALNEKQAL---TL 137 RS SL + + ++L +++ + + +R K+ +L A +E + L ++ Sbjct: 302 PRSAAYSLQVLGALFRWLVQQRYVLANPFAGIKVRGGAKTAALDVSHAFSEGEWLLTRSI 361 Query: 138 VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD---QSTLRIQGKG 194 D + E R IL Y GLR SE + T +N+ D LR+ GKG Sbjct: 362 ADGLEWSYGWEAS-AAQRLRFILDFTYATGLRASELVGATLRNVETDVHGDHWLRLVGKG 420 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF----------- 243 K V L R A+ Y + LP+ R + P P V Sbjct: 421 AKAGRVALPTMARNALDRYL--------VERGLPVTRAL-WDPTTPIVGNLGSDEAGGIT 471 Query: 244 -QRYIRQLRRYLGLPLS---------------TTAHTLRHSFATHLLSNGGDLRSIQSIL 287 R ++R+ G + H LRH+ ATH L+ G +L +++ L Sbjct: 472 GARLWMVIKRFFGTAADQLEAERPATAEKLRRASPHWLRHTHATHALARGAELTTVRDNL 531 Query: 288 GHFRLSTTQIY 298 H +STT +Y Sbjct: 532 RHASVSTTSLY 542 >gi|301162166|emb|CBW21711.1| putative bacteriophage integrase [Bacteroides fragilis 638R] Length = 371 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 70/148 (47%), Gaps = 18/148 (12%) Query: 163 LYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD 220 L+ C LRIS+ LSL ++I+D + G K V ++ KA D+ P Sbjct: 223 LFSCMTSLRISDILSLCWEDIVDYSA-------GGKC--VHIITQKNKA----EDIIPIS 269 Query: 221 ---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 L L +G+ K L Q +++ R G+ + T H+ R +FAT + G Sbjct: 270 EEALGLIGYSSEKKGLVFKGLMRSWTQIPMKEWIRSAGITKNITFHSYRRTFATLQAAAG 329 Query: 278 GDLRSIQSILGHFRLSTTQIYTNVNSKN 305 D+R+IQSI+ H ++TTQ Y V N Sbjct: 330 TDIRTIQSIMAHKSITTTQRYIKVVDAN 357 >gi|300765731|ref|ZP_07075708.1| integrase [Listeria monocytogenes FSL N1-017] gi|300513604|gb|EFK40674.1| integrase [Listeria monocytogenes FSL N1-017] Length = 400 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 4/75 (5%) Query: 229 LFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 LF + GKP+ P ++QR+ R L R+ LP+ H LRH+ AT LL+ G D++ IQ L Sbjct: 312 LFANMEGKPIRPDSIYQRWKRFLERH-NLPV-IRFHDLRHTSATLLLNKGRDIKIIQERL 369 Query: 288 GH-FRLSTTQIYTNV 301 H ++T+ IY +V Sbjct: 370 RHKSSVTTSNIYAHV 384 >gi|254933695|ref|ZP_05267054.1| phage integrase [Listeria monocytogenes HPB2262] gi|293585259|gb|EFF97291.1| phage integrase [Listeria monocytogenes HPB2262] gi|332310427|gb|EGJ23522.1| Phage Integrase [Listeria monocytogenes str. Scott A] Length = 400 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 4/75 (5%) Query: 229 LFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 LF + GKP+ P ++QR+ R L R+ LP+ H LRH+ AT LL+ G D++ IQ L Sbjct: 312 LFANMEGKPIRPDSIYQRWKRFLERH-NLPV-IRFHDLRHTSATLLLNKGRDIKIIQERL 369 Query: 288 GH-FRLSTTQIYTNV 301 H ++T+ IY +V Sbjct: 370 RHKSSVTTSNIYAHV 384 >gi|189182967|ref|YP_001936752.1| putative integrase [Orientia tsutsugamushi str. Ikeda] gi|189183100|ref|YP_001936885.1| putative integrase [Orientia tsutsugamushi str. Ikeda] gi|189183215|ref|YP_001937000.1| putative integrase [Orientia tsutsugamushi str. Ikeda] gi|189179738|dbj|BAG39518.1| putative integrase [Orientia tsutsugamushi str. Ikeda] gi|189179871|dbj|BAG39651.1| putative integrase [Orientia tsutsugamushi str. Ikeda] gi|189179986|dbj|BAG39766.1| putative integrase [Orientia tsutsugamushi str. Ikeda] Length = 128 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 38/54 (70%), Gaps = 2/54 (3%) Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNV 301 ++R+ +P + T H LR +FAT ++NG +LR+I +LGH R+STT +IYT + Sbjct: 24 KIRKKARIP-NVTIHDLRRTFATWSINNGEELRTIAEMLGHSRISTTAEIYTKI 76 >gi|307313958|ref|ZP_07593572.1| integrase family protein [Escherichia coli W] gi|33413728|gb|AAN28248.1| Int [Enterobacteria phage WPhi] gi|306906275|gb|EFN36791.1| integrase family protein [Escherichia coli W] gi|315063206|gb|ADT77533.1| integrase [Escherichia coli W] gi|323380729|gb|ADX52997.1| integrase family protein [Escherichia coli KO11] Length = 326 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 1/60 (1%) Query: 243 FQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 ++++ LRR +P + H LRH+FA+H + NGG++ ++Q ILGH + T Y ++ Sbjct: 247 YEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 306 >gi|295840983|dbj|BAJ06864.1| integron integrase intI [uncultured bacterium] Length = 423 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 73/292 (25%), Positives = 117/292 (40%), Gaps = 75/292 (25%) Query: 29 RGLSKLTLQSYECDTRQFLIF-----LAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKI 83 R S T +SY+ +FL F LA +TE IT R L + I ++ + Sbjct: 161 RHYSFQTEKSYKAWLVRFLKFHAVDNLADFTELHIT----RFLEHLVI--------SRHV 208 Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLL 143 + ++L+ + F K++ R+ + + + KK LP L++ + TL ++ Sbjct: 209 SSSTQSQALNALVYFYKHVLDREPSEDIQFVRS---KKPKRLPVVLSQDEISTLFAHI-- 263 Query: 144 HTSHETKWIDARNSAILY---LLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRI 199 RN L LLYGCG+R+ E + + ++ D L I+G KG K R+ Sbjct: 264 -----------RNPTFLLMANLLYGCGMRLMECVRIRILDVDFDYQQLLIRGAKGKKDRV 312 Query: 200 VPL-----------LPSVRK-----------------AILEYYDLCPFDLNLNIQLPLFR 231 P+ L VR A+ Y + P R Sbjct: 313 APIPAKLVTTLKSHLTGVRNMHDEDLAQGYGSVYLPGALARKYPNAEKEFRWQFVFPSVR 372 Query: 232 GIRGKPLNPGVFQRYIRQ--LRRYL-------GLPLSTTAHTLRHSFATHLL 274 + P + + + +I Q L+ +L G+ + HTLRHSFATHLL Sbjct: 373 -VSADPRSGEIRRHHIHQTGLQHHLKRAADSSGINKKVSCHTLRHSFATHLL 423 >gi|260450873|gb|ACX41295.1| integrase family protein [Escherichia coli DH1] gi|323176201|gb|EFZ61793.1| phage integrase family protein [Escherichia coli 1180] Length = 183 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 66/158 (41%), Gaps = 2/158 (1%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILE 212 AR+ ++ L Y G+RISE L L Q++ ++ + I+ + V PL R+A+ Sbjct: 11 ARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVER 70 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 + + +F RG L+ R IR G T H LRH+ Sbjct: 71 WTQERANWKGADRTDAIFISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGYE 130 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN-GGDW 309 L G D R IQ LGH + T YT N+ G W Sbjct: 131 LAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLW 168 >gi|237794996|ref|YP_002862548.1| site-specific recombinase, phage integrase family [Clostridium botulinum Ba4 str. 657] gi|229261916|gb|ACQ52949.1| site-specific recombinase, phage integrase family [Clostridium botulinum Ba4 str. 657] Length = 357 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 79/178 (44%), Gaps = 35/178 (19%) Query: 152 IDARNSAILYLLYG-CGLRISEALSLTPQNI--------MDDQSTLRIQGK--------G 194 I+ + I+ LL CGLRI E L LT NI ++ Q L GK Sbjct: 188 IENKQYYIMTLLASKCGLRIGEILGLTWDNIDEINKTIIVNKQWKLNKDGKFGFGELKSK 247 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 + R VP K I Y +N++ ++ ++ N IR+ + L Sbjct: 248 NSYRKVP----CPKIIFTYLKTYKKVVNIDNRIVNYKNTISTASN-------IRREYKQL 296 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 G +S H LRH++AT L+S+ D ++ +ILGH T +IY++V D MME Sbjct: 297 GYDISI--HELRHTYATKLISSRMDFKTAANILGHDIEMTMKIYSHV-----TDEMME 347 >gi|160937006|ref|ZP_02084370.1| hypothetical protein CLOBOL_01895 [Clostridium bolteae ATCC BAA-613] gi|158440196|gb|EDP17943.1| hypothetical protein CLOBOL_01895 [Clostridium bolteae ATCC BAA-613] Length = 172 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 34/52 (65%) Query: 151 WIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPL 202 W+ ARN AI+ L+ G GLR +E +L + + D+ L++ GKG K R+VPL Sbjct: 101 WLTARNKAIIALMLGSGLRQNEICTLVKKGLDFDRGALQVTGKGCKDRLVPL 152 >gi|150401647|ref|YP_001325413.1| phage integrase family protein [Methanococcus aeolicus Nankai-3] gi|150014350|gb|ABR56801.1| phage integrase family protein [Methanococcus aeolicus Nankai-3] Length = 324 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 8/168 (4%) Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIV 200 +L+++ TK R++ I+ L Y G RI E L+L ++ + + + KG ++R+ Sbjct: 143 ILNSNSATK---VRDALIIRLTYDTGARIGEILNLKLKDCDFQKGIFKFRNTKGREVRLT 199 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQL--PLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 KA+ Y D N L G G VF+R + +L LP Sbjct: 200 VCAYDTLKALKHYIDYYMKSKKSNDYLFQNKHNGKVGDYWIGKVFKRTVNKLVGRGTLPK 259 Query: 259 S--TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + T H+LRH LL+ G L + +GH + TT IY + NS+ Sbjct: 260 NKRITLHSLRHGRVVDLLNKGYGLDIVGDYVGHKDIRTTMIYAHSNSR 307 >gi|320449745|ref|YP_004201841.1| transposase [Thermus scotoductus SA-01] gi|320149914|gb|ADW21292.1| transposase [Thermus scotoductus SA-01] Length = 391 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 59/282 (20%), Positives = 118/282 (41%), Gaps = 39/282 (13%) Query: 63 IRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-NLKK 121 ++++ +RA + + R++ R L +K+ + + ++ + ++ L K Sbjct: 120 LQEVKPVHVRAAVDRVVEAGYAPRTVGRVLMRLKALFREALRLELVARNPAEAVKVRLPK 179 Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 RAL + L++ S + + +L L+ GLR EAL+L ++I Sbjct: 180 GEKAARALEPHEVARLLEAAEASRSKDM-------ALLLRLMLETGLRRGEALALQWRDI 232 Query: 182 MDDQSTL-------RIQGKGDKIRIVPLLPSVRKAILEYYD---------------LCPF 219 + L ++ G+G P P+ ++ + L P Sbjct: 233 DLEAGELTVGRAWVKVAGRGAFSE--PKTPTAKRKVPLPRGLLLRLKARREELLARLTPE 290 Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279 +++ L L G+ KP++P F Y+R+L GL H LRH++AT LS G Sbjct: 291 EVD---GLFLVGGV--KPVDPDAFNHYLRRLAERAGLG-RVRVHDLRHTWATLALSRGVP 344 Query: 280 LRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEIYDQTHPS 320 L + LGH + T +Y ++ + W++++ + +P+ Sbjct: 345 LEVVSERLGHASPTITLNVYRHLLEEERRGWVLDLEELLYPA 386 >gi|253572132|ref|ZP_04849536.1| integrase [Bacteroides sp. 1_1_6] gi|251838312|gb|EES66399.1| integrase [Bacteroides sp. 1_1_6] Length = 396 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 70/164 (42%), Gaps = 48/164 (29%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDL 216 A L+ Y GLR S+ ++LT NI++ Q T I SV+ I Sbjct: 238 AFLFCCYA-GLRYSDFINLTAANIVELHQETWLI------------YKSVKTGI------ 278 Query: 217 CPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTA-------------- 262 +++LPL+ GK L V + Y L + L ++ Sbjct: 279 -------DVRLPLYLLFEGKGLR--VLENYKDDLNGFFRLKDNSNVNKDLNALAKLAEID 329 Query: 263 -----HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 HT RH+ AT L+ +G ++ ++Q +LGH + TTQ+Y N+ Sbjct: 330 KRISFHTARHTNATLLIYSGANITTVQKLLGHKSVKTTQVYANI 373 >gi|153011637|ref|YP_001372851.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188] gi|151563525|gb|ABS17022.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188] Length = 193 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 19/161 (11%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTL--------RIQGKGDKIRIVPLLPSV 206 RN+A+L L + GLR E + ++D + L RI K R VP+ P + Sbjct: 30 RNAAMLLLSFKAGLRAGEIAKIEWSMLLDANNKLGTSINLPGRIT-KNAHPRRVPIHPDL 88 Query: 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLR 266 RKA+ + L +LN P+ RG+ ++ + + + GL ++H+ R Sbjct: 89 RKALQK---LAKGRGHLN--GPVIVSERGRAMSAKSVVNWFKHIYTLAGLE-GCSSHSGR 142 Query: 267 HSFATH----LLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 +F T + GG LR +Q + GH ++TTQ Y + +S Sbjct: 143 RTFVTQAARLVHKAGGSLRDVQLLAGHRSITTTQAYIDGDS 183 >gi|324020550|gb|EGB89769.1| site-specific recombinase, phage integrase family [Escherichia coli MS 117-3] Length = 336 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 1/60 (1%) Query: 243 FQRYIRQLRRY-LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 ++++ LRR +P + H LRH+FA+H + NGG++ ++Q ILGH + T Y ++ Sbjct: 257 YEKFCGILRRVKPDIPPNQATHILRHTFASHFMMNGGNIIALQQILGHASIQQTMTYAHL 316 >gi|119854946|ref|YP_935551.1| phage integrase family protein [Mycobacterium sp. KMS] gi|119697664|gb|ABL94736.1| phage integrase family protein [Mycobacterium sp. KMS] Length = 360 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 26/175 (14%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQ------GKGDKIRIVPLLP 204 AR+ A L+ GLRI+E L +I + L ++ G+G K R+VPL+ Sbjct: 168 ARSYAAAQLMMRIGLRINECCYLDLDDIRWELGRFGKLHVRHGKGSRGRGPKQRVVPLIN 227 Query: 205 SVRKAILEYYDLCPFDLNLNIQ---LPLFRGIRG-----------KPLNPGVFQRYIRQL 250 + + Y + PLF R +PL + Q R L Sbjct: 228 GADRTLRWYVEDVWGHFGDGWDQPGTPLFPSERHHPDGSHIRVSREPLRAALSQAVERHL 287 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 ++ G T H LRH A+ + +G DL +IQ +LGH ++TT Y +V+ ++ Sbjct: 288 PQWKG---RLTPHVLRHYCASEVYRSGMDLVAIQELLGHQWVATTMRYVHVHREH 339 >gi|119714857|ref|YP_921822.1| phage integrase family protein [Nocardioides sp. JS614] gi|119535518|gb|ABL80135.1| phage integrase family protein [Nocardioides sp. JS614] Length = 329 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 66/288 (22%), Positives = 114/288 (39%), Gaps = 24/288 (8%) Query: 28 ERGLSKLTLQSYECDTRQFLIFLAF---YTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 +R LS T+ SY R L +L + + + + + T ++ R Sbjct: 19 QRDLSNHTIGSYRDTWRMLLKYLTTTLGVSVDAVDFDAVTATNITRFLDYLEHERGNSAK 78 Query: 85 DRSLKRSLSGIKSFLKYL---KKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV 141 R+++ L+ I++ L + T + +L + + + + L + + Sbjct: 79 TRNVR--LTAIRAVLGHALPDHPEHAATITQVLAIPPKRTTRPVIEFLRPDEVV-----A 131 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIV 200 LL T R+ A+L + GLRISE SLT ++ + + GKG + RI Sbjct: 132 LLAAPDPTTRTGRRDHALLAMTVQTGLRISEVCSLTIDDVHLGTGPHVTCTGKGRRRRIT 191 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ--LRRYLGLPL 258 PL + + +Y + + LF G RG L+ + + P Sbjct: 192 PLTGATVSVMTDYLT----ERSARPGTALFCGPRGLSLSRDALEHRLATHVAAAAAACPS 247 Query: 259 ST----TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 T T HTLRH+ A +LL+ G D+ I LGH +T Y + + Sbjct: 248 LTGKHVTMHTLRHTAAMNLLAAGVDVAVIALWLGHADTHSTDGYLHAD 295 >gi|313886120|ref|ZP_07819854.1| site-specific recombinase, phage integrase family [Porphyromonas asaccharolytica PR426713P-I] gi|332300732|ref|YP_004442653.1| integrase family protein [Porphyromonas asaccharolytica DSM 20707] gi|312924423|gb|EFR35198.1| site-specific recombinase, phage integrase family [Porphyromonas asaccharolytica PR426713P-I] gi|332177795|gb|AEE13485.1| integrase family protein [Porphyromonas asaccharolytica DSM 20707] Length = 423 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 39/71 (54%) Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 Y++++ G+ + T H RH+FAT LS G + S+ +LGH + TTQIY + +K Sbjct: 337 YLKEIADICGIKKNLTFHLARHTFATMSLSKGVPIESVSKMLGHTNIRTTQIYARITNKK 396 Query: 306 GGDWMMEIYDQ 316 M + D+ Sbjct: 397 IEHDMEQFADK 407 >gi|228471367|ref|ZP_04056168.1| integrase [Porphyromonas uenonis 60-3] gi|228306868|gb|EEK15981.1| integrase [Porphyromonas uenonis 60-3] Length = 423 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 39/71 (54%) Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 Y++++ G+ + T H RH+FAT LS G + S+ +LGH + TTQIY + +K Sbjct: 337 YLKEIADICGIKKNLTFHLARHTFATMSLSKGVPIESVSKMLGHTNIRTTQIYARITNKK 396 Query: 306 GGDWMMEIYDQ 316 M + D+ Sbjct: 397 IEHDMEQFADK 407 >gi|291457789|ref|ZP_06597179.1| site-specific recombinase, phage integrase family [Bifidobacterium breve DSM 20213] gi|291380842|gb|EFE88360.1| site-specific recombinase, phage integrase family [Bifidobacterium breve DSM 20213] Length = 447 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 73/176 (41%), Gaps = 27/176 (15%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-----QGKGD-------------K 196 R S L LL G GLRI E L ++I D L + QG D Sbjct: 220 RLSIHLALLVG-GLRIGEVCGLQLRDIDLDHRLLYVRHSVTQGPDDLGEYRLDETKTPES 278 Query: 197 IRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRY 253 R+VP+ V + I E+ D CP + + LF IR + LNP QR R R+ Sbjct: 279 HRVVPIPAPVCRLIREHIDRFCP---DRDPDTMLFHAIRHPERVLNPTTIQRQFRTARKR 335 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGD 308 + T H+LR + AT + GG LR LGH + + Y V ++ D Sbjct: 336 INRE-DVTFHSLRATHATMFMIQGGTLRETMDELGHVDVDVAVRCYQRVVPRHRRD 390 >gi|221198844|ref|ZP_03571889.1| phage integrase family protein [Burkholderia multivorans CGD2M] gi|221205104|ref|ZP_03578120.1| phage integrase family protein [Burkholderia multivorans CGD2] gi|221174895|gb|EEE07326.1| phage integrase family protein [Burkholderia multivorans CGD2] gi|221181295|gb|EEE13697.1| phage integrase family protein [Burkholderia multivorans CGD2M] Length = 613 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 75/352 (21%), Positives = 129/352 (36%), Gaps = 99/352 (28%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 +ERG++ ++Q +C+ + FLA + +++ A + R + G Sbjct: 270 VERGVALSSMQVEDCEA--YKAFLAAPSA-----------AFSGPPASRASGRWRPFGPG 316 Query: 87 SLK-----RSLSGIKSFLKYLKKRK---------ITTESNILNMRNLKKSNSLPRALNEK 132 L ++ I++ ++L K + + + + + ++ S +LP L + Sbjct: 317 GLSLESQLYAVRAIRAAFEWLVKVRYLAGNPWAAVVDPKPVKHAKRMQVSRALPVDLWAR 376 Query: 133 QALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEA-------LSLTPQNI-MDD 184 L D H ++W AR A+L L+ GLRI+EA L L P + + Sbjct: 377 TRAALADWSEGSGPHASRWRAAR--ALLLLMGDAGLRIAEATAASRDALELHPADGEIPA 434 Query: 185 QSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN---------LNIQLPLF----- 230 LR+ GK K R VPL + A+ ++ D + + + PL Sbjct: 435 TWELRVIGKRRKERFVPLSGTCIDALRAHWRDRGMDFDAADGTGRSDVALIAPLVIPRTP 494 Query: 231 --------------------------RGIRGKPLNPGVFQRYIRQL------------RR 252 RG RG + Q + QL RR Sbjct: 495 RAREKFAPNDDASNGAAQKTATGYSVRGARG------LAQWAVEQLLEKMPDLTEPERRR 548 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 G+ + H RH+F T ++ L +Q +LGH L TT +Y K Sbjct: 549 LAGV----SPHAFRHTFGTQSVATDVPLDVVQQLLGHASLQTTSVYVTAEEK 596 >gi|322372958|ref|ZP_08047494.1| site-specific recombinase, phage integrase family [Streptococcus sp. C150] gi|321278000|gb|EFX55069.1| site-specific recombinase, phage integrase family [Streptococcus sp. C150] Length = 356 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 72/294 (24%), Positives = 120/294 (40%), Gaps = 48/294 (16%) Query: 58 ITIQTIRQLSYTEIRAFISKRRT----------QKIGDRSLKRSLSGIKSFLKYLKKRKI 107 I I+T+ L+ ++ +F+ R Q + ++ R+LS + S KYL + Sbjct: 66 IDIKTLENLTKKDMESFVLYLRERPSLNTYSTKQGVSQTTINRTLSALSSLYKYLTEEVE 125 Query: 108 TTESNILNMRNLKKSNSL--------PRALNEKQALTLVDNVL-----LHTSHETKWID- 153 + RN+ K S RA N KQ L L D + + +E K + Sbjct: 126 GPDGEPYFYRNVMKKVSTKKKKETLAARAENIKQKLFLGDETMEFLDYVEKEYEVKLSNR 185 Query: 154 ---------ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLP 204 R+ AI+ LL G+R+SEA++L ++I + + KG K V + Sbjct: 186 AKSSFYKNKERDLAIIALLLASGVRLSEAVNLDLKDINLKMMVIDVTRKGGKRDSVNV-A 244 Query: 205 SVRKAILEYYDLCPFD-------LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP 257 S K LE Y L D +L + L +RG+ + ++ ++ + + + Sbjct: 245 SFAKPYLESY-LSIRDKRYKAEKQDLALFLTEYRGVPNR-IDASSIEKMVAKYSQ--DFK 300 Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV---NSKNGGD 308 + T H LRH+ AT L + LGH T +YT++ KN D Sbjct: 301 IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354 >gi|313886232|ref|ZP_07819961.1| site-specific recombinase, phage integrase family [Porphyromonas asaccharolytica PR426713P-I] gi|312924303|gb|EFR35083.1| site-specific recombinase, phage integrase family [Porphyromonas asaccharolytica PR426713P-I] Length = 423 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 39/71 (54%) Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 Y++++ G+ + T H RH+FAT LS G + S+ +LGH + TTQIY + +K Sbjct: 337 YLKEIADICGIKKNLTFHLARHTFATMSLSKGVPIESVSKMLGHTNIRTTQIYARITNKK 396 Query: 306 GGDWMMEIYDQ 316 M + D+ Sbjct: 397 IEHDMEQFADK 407 >gi|297516648|ref|ZP_06935034.1| tyrosine recombinase [Escherichia coli OP50] Length = 185 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 66/158 (41%), Gaps = 2/158 (1%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILE 212 AR+ ++ L Y G+RISE L L Q++ ++ + I+ + V PL R+A+ Sbjct: 13 ARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVER 72 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 + + +F RG L+ R IR G T H LRH+ Sbjct: 73 WTQERANWKGADRTDAIFISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGYE 132 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN-GGDW 309 L G D R IQ LGH + T YT N+ G W Sbjct: 133 LAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLW 170 >gi|110807982|ref|YP_691502.1| tyrosine recombinase [Shigella flexneri 5 str. 8401] gi|300818491|ref|ZP_07098700.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 107-1] gi|300823755|ref|ZP_07103880.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 119-7] gi|300895832|ref|ZP_07114414.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 198-1] gi|300905283|ref|ZP_07123055.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 84-1] gi|300926461|ref|ZP_07142257.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 182-1] gi|300977981|ref|ZP_07174112.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 45-1] gi|301021321|ref|ZP_07185350.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 69-1] gi|301048270|ref|ZP_07195304.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 185-1] gi|301305107|ref|ZP_07211207.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 124-1] gi|301328032|ref|ZP_07221193.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 78-1] gi|301646818|ref|ZP_07246667.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 146-1] gi|309795580|ref|ZP_07689996.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 145-7] gi|110617530|gb|ABF06197.1| Type 1 fimbriae Regulatory protein fimE [Shigella flexneri 5 str. 8401] gi|300299892|gb|EFJ56277.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 185-1] gi|300360248|gb|EFJ76118.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 198-1] gi|300398172|gb|EFJ81710.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 69-1] gi|300402867|gb|EFJ86405.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 84-1] gi|300409775|gb|EFJ93313.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 45-1] gi|300417568|gb|EFK00879.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 182-1] gi|300523667|gb|EFK44736.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 119-7] gi|300528895|gb|EFK49957.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 107-1] gi|300839612|gb|EFK67372.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 124-1] gi|300845479|gb|EFK73239.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 78-1] gi|301074988|gb|EFK89794.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 146-1] gi|308120704|gb|EFO57966.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 145-7] gi|315255840|gb|EFU35808.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 85-1] gi|315286852|gb|EFU46269.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 110-3] gi|315293234|gb|EFU52586.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 153-1] gi|315298920|gb|EFU58174.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 16-3] gi|324005154|gb|EGB74373.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 57-2] gi|324016931|gb|EGB86150.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 117-3] Length = 184 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 66/158 (41%), Gaps = 2/158 (1%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILE 212 AR+ ++ L Y G+RISE L L Q++ ++ + I+ + V PL R+A+ Sbjct: 12 ARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVER 71 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 + + +F RG L+ R IR G T H LRH+ Sbjct: 72 WTQERANWKGADRTDAIFISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGYE 131 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN-GGDW 309 L G D R IQ LGH + T YT N+ G W Sbjct: 132 LAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLW 169 >gi|77454861|ref|YP_345729.1| putative transposase [Rhodococcus erythropolis PR4] gi|77019861|dbj|BAE46237.1| putative transposase [Rhodococcus erythropolis PR4] Length = 611 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 82/194 (42%), Gaps = 21/194 (10%) Query: 121 KSNSLPRALNEKQA---LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLT 177 K LPR L++ A LT N+ D + +L G+R E L LT Sbjct: 325 KDKPLPRFLDDGAAAKFLTAARNL----------PDEFGRLAIEMLSRTGMRKGELLDLT 374 Query: 178 PQNIMDDQST--LRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234 +++ S LRI GK R VPL P ++ I + + P D + PL R Sbjct: 375 IDSVVQIGSAYWLRIPVGKLHNDRYVPLHPQLKTMIDTWLEHRP-DWQDS---PLLFTDR 430 Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 G+P+ + ++ G+ H LRH+ AT ++ G L +I ++LGH + Sbjct: 431 GRPIPGTRIDKAVQSAAAAAGIG-HVHPHQLRHTLATQAINRGMSLEAIAALLGHKTMEM 489 Query: 295 TQIYTNVNSKNGGD 308 T +Y + + D Sbjct: 490 TMVYARIADRTVAD 503 >gi|325280482|ref|YP_004253024.1| integrase family protein [Odoribacter splanchnicus DSM 20712] gi|324312291|gb|ADY32844.1| integrase family protein [Odoribacter splanchnicus DSM 20712] Length = 372 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 68/146 (46%), Gaps = 14/146 (9%) Query: 163 LYGC--GLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219 L+ C LRIS+ L+L + I+D + + + K + ++P +A Sbjct: 224 LFSCLTSLRISDILTLRWEEIVDFAAGGKCVYTVTQKTKTEDIIPISDEA---------- 273 Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279 L L P G+ K L Q +++ R G+ + T H+ R +FAT + G D Sbjct: 274 -LQLIGYSPEKTGLVFKGLKRCWTQYPMKEWIRTAGITKNITFHSYRRTFATLQAATGTD 332 Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKN 305 +R+IQSI+ H ++TTQ Y V N Sbjct: 333 IRTIQSIMAHKSITTTQRYMKVVDSN 358 >gi|152995812|ref|YP_001340647.1| phage integrase family protein [Marinomonas sp. MWYL1] gi|150836736|gb|ABR70712.1| phage integrase family protein [Marinomonas sp. MWYL1] Length = 283 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 10/139 (7%) Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYD-LC 217 + L Y G+RISE L ++ +++ QGKG + R V S+++ + Y+ Sbjct: 124 MVLAYTTGMRISEVNELRVNDLDLTHHCIKVRQGKGQQDRYVLFPQSLQQVLGRYWQRYE 183 Query: 218 PFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 P D+ + G+ + +PL+ + ++ + G+ H+LRH+FA H L Sbjct: 184 PCDV-------VVYGLDKHRPLHSKYLRLETKEAAKRAGIQKCIRFHSLRHAFACHQLLA 236 Query: 277 GGDLRSIQSILGHFRLSTT 295 G L +Q++LGH ++ TT Sbjct: 237 GMPLPRLQALLGHKQIQTT 255 >gi|94442222|dbj|BAE93610.1| integron integrase [uncultured bacterium] Length = 211 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 84/192 (43%), Gaps = 48/192 (25%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 K+ LP L + + TL++N + N I LLYG G+R E L L Sbjct: 31 KQPRHLPVVLTQDEVGTLLEN-----------MKGVNGLIARLLYGTGMRKMECLRLRIM 79 Query: 180 NIMDDQSTLRIQ-GKG--DKIRIVP--LLPSVRKAILEYYDLCPFDLNLN---IQLPLF- 230 ++ D S + ++ GKG D+I ++P L+ S+R + L +D++ ++LP Sbjct: 80 DVDFDYSQIHVRSGKGGKDRIALLPDCLVASLRSQLEHTEKLHKYDIDEGYGEVELPFAL 139 Query: 231 --------RGIRGKPLNP----------GVFQRY----------IRQLRRYLGLPLSTTA 262 R + + + P GV +R+ IRQ + + + Sbjct: 140 ERKYPNAGREWKWQYVFPSTKRSVDKRTGVIRRHHWHDTNVSRAIRQSVCFSRISKHVSV 199 Query: 263 HTLRHSFATHLL 274 HTLRHSFATHLL Sbjct: 200 HTLRHSFATHLL 211 >gi|15837280|ref|NP_297968.1| phage-related integrase [Xylella fastidiosa 9a5c] gi|9105558|gb|AAF83488.1|AE003911_10 phage-related integrase [Xylella fastidiosa 9a5c] Length = 387 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 70/267 (26%), Positives = 119/267 (44%), Gaps = 35/267 (13%) Query: 53 YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS---LKRSLSGIKSFL-KYLKKRKIT 108 Y + T+ +++ + R F+ +T RS +KR L+ K+ L + K+ +IT Sbjct: 98 YWSDFFAGATVSEITPSRQREFVRWLQTGSDTPRSDGYIKRILTVGKAALNRAYKEGEIT 157 Query: 109 TESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGL 168 + I+ ++ + + L+ +++ L + L HE + L L YG Sbjct: 158 SVPYIIPGKDAPPRDQV---LSLQESAALWEAATL--PHERMY--------LALAYGTLA 204 Query: 169 RISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225 R L L + D Q L Q G+ + P++P I ++ L P+ L+++ Sbjct: 205 RPEAILGLR-REFADIQRRLLTQNPPGRKQTKKFRPVVP-----ICDF--LLPWILSVD- 255 Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285 + PL GKP+ F+ R LR + GLP T +RH+ AT L S G + IQ Sbjct: 256 RGPLVH-WHGKPI--ASFKTAWRALRTHAGLPKDTVPKVIRHTMATELRSAGVAAQDIQG 312 Query: 286 ILGHFRLSTTQIYTNVNSKNGGDWMME 312 +LGH T T+V +K D+M + Sbjct: 313 MLGHRAYGGT---TDVYAKYRPDYMAD 336 >gi|325525694|gb|EGD03452.1| site-specific tyrosine recombinase XerC [Burkholderia sp. TJI49] Length = 106 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 55/107 (51%), Gaps = 5/107 (4%) Query: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 ++R +++ + RS+ LS ++F ++L + + + +R K+ +LP+AL Sbjct: 2 DMRGAVARAHAGGLSARSISHRLSAWRAFYRWLAQHVEMPANPVAAVRAPKRPKTLPKAL 61 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 + A TL++ L T+ R+ AIL L Y GLR++E + L Sbjct: 62 SVDDASTLMEAPLADTTE-----GIRDHAILELFYSSGLRLAELIGL 103 >gi|290770043|gb|ADD61807.1| putative protein [uncultured organism] Length = 372 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 79/173 (45%), Gaps = 32/173 (18%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQS-----TLRIQGKGDKIRIVPLLPSVRKAILEYY 214 L+GC GLR S+ LT Q I + T R+Q K +I P+ E Y Sbjct: 224 FLFGCLTGLRKSDIKQLTWQQIQPYTNGKMFVTTRMQ-KTKQIVHNPISD-------EAY 275 Query: 215 DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 L L + +F G + K L G +R++ G+ T H RHSF + + Sbjct: 276 GL----LGERCEGLIFDGFKDKMLQ-GPLKRWLLAA----GITKKITFHCTRHSFGSLHV 326 Query: 275 SNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQKDKK 327 G D+ IQ+ LGH ++TTQIY+ + ++ M E+ D+ IT K KK Sbjct: 327 EMGTDMAVIQAYLGHKNITTTQIYSKMAARQ----MCEVVDK----ITLKRKK 371 >gi|154502506|ref|ZP_02039566.1| hypothetical protein RUMGNA_00319 [Ruminococcus gnavus ATCC 29149] gi|153796902|gb|EDN79322.1| hypothetical protein RUMGNA_00319 [Ruminococcus gnavus ATCC 29149] Length = 345 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 67/290 (23%), Positives = 122/290 (42%), Gaps = 31/290 (10%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTE----EKITIQTIRQLSYTEIRAFISKRRTQKIG 84 RGLSK T+ SY+ T LI + + ++IT + + ++ +++ R + Sbjct: 26 RGLSKNTINSYKT-TFTLLIKYMYSVKNMKADEITFGCLDVNTLSDFMSWLEHERKCSVT 84 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNV--L 142 R+ + L+ + SF +Y + S + S P+ +++ D V L Sbjct: 85 TRNQR--LAALYSFSEYAQNYDFDAASTFRSAVLRIPSKKAPK---KRRVGFTTDEVKIL 139 Query: 143 LHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ--NIMDDQSTLRIQGKGDKIRIV 200 L + R+ +L +Y G R E LT + N +T+ I GKG K R + Sbjct: 140 LALPNPKSETGLRDMVLLSFMYATGTRAQEVCDLTVKSVNFRSTGTTIDIVGKGSKARRI 199 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL-RRYLGLPLS 259 +P ++L+ Y + I+ R I + + + ++ ++Y+ L Sbjct: 200 -RIPDTCASMLKKYIK-----HRRIETEPDRHIFSSQTHEHMTISCVEEIYKKYIKLAKE 253 Query: 260 TTA----------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 T H++RH+ H+L G + I++ LGH + TTQIYT Sbjct: 254 KTPNLFKEEHYSPHSMRHTTGQHMLEAGVPIMVIKAFLGHASVQTTQIYT 303 >gi|154505593|ref|ZP_02042331.1| hypothetical protein RUMGNA_03132 [Ruminococcus gnavus ATCC 29149] gi|166032352|ref|ZP_02235181.1| hypothetical protein DORFOR_02055 [Dorea formicigenerans ATCC 27755] gi|153794032|gb|EDN76452.1| hypothetical protein RUMGNA_03132 [Ruminococcus gnavus ATCC 29149] gi|166028075|gb|EDR46832.1| hypothetical protein DORFOR_02055 [Dorea formicigenerans ATCC 27755] Length = 387 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 73/182 (40%), Gaps = 45/182 (24%) Query: 165 GCGLRISEALSLTPQNI---------------MDDQSTLRIQGK------GDKIRIVPLL 203 G G+R E L LT ++ + D+ T + K + IR +P+ Sbjct: 186 GTGMRGGELLGLTWDDVDFRKREISVNKTLVYIKDKETKKYVFKYQTPKTKNSIRTIPMQ 245 Query: 204 PSVRKAIL-EYYDLCPFDLNLNIQLPL-------FRGIRGKPLNPGVFQRYIRQLRRYLG 255 SV KA+ ++ L L+ + PL F G GKP+ FQ + + + + Sbjct: 246 DSVYKALKRQWIQLKEMQLSASEWQPLEGFENLVFVGKNGKPITEHTFQVTLDWIEKSIN 305 Query: 256 LPLSTTA---------------HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYT 299 A H LRH+FAT G D + +Q LGH+ ++ T +YT Sbjct: 306 KERKKQAEKNKTVFIPIPHFYPHALRHTFATRCFEAGIDAKVVQGFLGHYSIAITLDLYT 365 Query: 300 NV 301 +V Sbjct: 366 HV 367 >gi|15894395|ref|NP_347744.1| XerC/XerD family integrase/recombinase [Clostridium acetobutylicum ATCC 824] gi|15024028|gb|AAK79084.1|AE007627_8 Integrase/recombinase (xerC/xerD family); CF-10 family [Clostridium acetobutylicum ATCC 824] gi|325508523|gb|ADZ20159.1| Integrase/recombinase (xerC/xerD family); CF-10 family [Clostridium acetobutylicum EA 2018] Length = 340 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 70/303 (23%), Positives = 125/303 (41%), Gaps = 33/303 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + ++Q E E SK T++ Y+ + + FL++L + K + ++ ++ + Sbjct: 28 EEFIQYCEAEDK-SKETVRVYKSNIKIFLVWLLKFARNKRFVDIKKKDIMLYQNWLLNTQ 86 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 R + L+ LS + SF++ + + NI+ S P E + T+ Sbjct: 87 RLSPARIKHLRAPLSSMSSFVEDILDDEYPEFRNII-------SKIKPPTKQETREKTVF 139 Query: 139 DNVLLHTSHETKWIDAR--NSAILYLLYGCGLRISEAL----SLTPQNIMDDQS---TLR 189 N + E D + + + L G+R SE L S +N +D++ T + Sbjct: 140 TNEQVEKLIEMLIKDKKYQQACFVACLAASGVRKSEILQFKVSFFTENSLDEEGMYHTPK 199 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL------NLNIQLPLFRGIRGK----PLN 239 I+ KG PL+ + K I+++ FDL L I ++ K P Sbjct: 200 IRTKGHGKLGKPLVKFIIKDIVKH----AFDLWIEERKQLGIDTDDLFVVKHKDKWYPAK 255 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 ++ + + +G T H RH AT L NG + I+ LGH STTQIY Sbjct: 256 VSTVNGWMNKFSKIIGEDCYT--HAFRHYAATWLKRNGATIDQIKDFLGHNDTSTTQIYI 313 Query: 300 NVN 302 +++ Sbjct: 314 DID 316 >gi|300992559|ref|ZP_07179926.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 200-1] gi|732682|emb|CAA85726.1| FimE protein [Escherichia coli] gi|1816486|emb|CAA71840.1| FimE recombinase [Escherichia coli] gi|300305300|gb|EFJ59820.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 200-1] gi|324012903|gb|EGB82122.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 60-1] Length = 184 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 66/158 (41%), Gaps = 2/158 (1%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILE 212 AR+ ++ L Y G+RISE L L Q++ ++ + I+ + V PL R+A+ Sbjct: 12 ARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVER 71 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 + + +F RG L+ R IR G T H LRH+ Sbjct: 72 WTQERANWKGADRTDAIFISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGYE 131 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN-GGDW 309 L G D R IQ LGH + T YT N+ G W Sbjct: 132 LAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLW 169 >gi|332884809|gb|EGK05065.1| hypothetical protein HMPREF9456_03218 [Dysgonomonas mossii DSM 22836] gi|332885880|gb|EGK06126.1| hypothetical protein HMPREF9456_02390 [Dysgonomonas mossii DSM 22836] Length = 98 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 18/99 (18%) Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 I+ + NP F +I + HTLRH+ A HLL G L I+ ILGH + Sbjct: 3 IKTRKENPAFFTGHI-------------SCHTLRHTKAMHLLQAGVILHHIRDILGHSSV 49 Query: 293 STTQIYTNVNSKNGGDWMMEIYDQTHPSIT-----QKDK 326 TT+IY +SK + + Y + P+I +KDK Sbjct: 50 MTTEIYARSDSKQKREAIERAYLRLSPNIESENLWEKDK 88 >gi|331646067|ref|ZP_08347170.1| integrase for prophage [Escherichia coli M605] gi|331044819|gb|EGI16946.1| integrase for prophage [Escherichia coli M605] Length = 397 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/188 (22%), Positives = 77/188 (40%), Gaps = 28/188 (14%) Query: 124 SLPRALNEKQALTLVDNVLLHTSHE--------TKWIDARNSAILYLLYGCGLRISEALS 175 S P L + T+ + + +HE K D + ++ + G R EA++ Sbjct: 206 SYPNPLENMRKFTIAEKEMAWLTHEQIVELLADCKRQDPILALVVKICLSTGARWREAVN 265 Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235 LT + + T ++ KG K R +P+ + + I+ L F+ Sbjct: 266 LTRSQVTKYRITF-VRTKGKKNRSIPISKELYEEIMA---LDGFNF-------------- 307 Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 FQ + + LP H LRH+FA H + +GG++ ++Q ILGH + T Sbjct: 308 --FTDCYFQFLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMT 365 Query: 296 QIYTNVNS 303 Y ++ + Sbjct: 366 MRYAHLET 373 >gi|225574819|ref|ZP_03783429.1| hypothetical protein RUMHYD_02896 [Blautia hydrogenotrophica DSM 10507] gi|225038019|gb|EEG48265.1| hypothetical protein RUMHYD_02896 [Blautia hydrogenotrophica DSM 10507] Length = 279 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 57/239 (23%), Positives = 98/239 (41%), Gaps = 47/239 (19%) Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETK---- 150 I+SFL Y+KK ES I L+K LP ++N K A N L+ S T+ Sbjct: 34 IQSFLMYIKKHGFCKESVIQYKEKLRK-EYLPASVNVKLAAI---NGFLNYSGATELKVK 89 Query: 151 --------------------WIDARNSA----------ILYLLYGCGLRISEALSLTPQN 180 ++ N+A +L + G G+R+SE +T + Sbjct: 90 QLRIQKKTYCAKEKELSKNEYLCMVNTARSLGQEKLALLLQTICGTGIRVSELSFITAEA 149 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240 + + ++ + ++GK R V + +RK + Y +F G+PL+ Sbjct: 150 VCNGEALIHMKGK---TRTVLIPGKLRKVLKRYMGSQKISSG-----AVFVTRTGRPLDR 201 Query: 241 GVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 + +++L G+ H LRH FA + D+ + +LGH ++TT+IY Sbjct: 202 SNIWKMMKRLCGKAGVETKKVFPHNLRHLFARCFYAADKDIAKLADVLGHSSINTTRIY 260 >gi|195978129|ref|YP_002123373.1| site-specific tyrosine recombinase XerS [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|254799370|sp|B4U2Z3|XERS_STREM RecName: Full=Tyrosine recombinase xerS gi|195974834|gb|ACG62360.1| tyrosine recombinase XerC [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 356 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 73/299 (24%), Positives = 117/299 (39%), Gaps = 58/299 (19%) Query: 58 ITIQTIRQLSYTEIRAFISKRR---------TQK-IGDRSLKRSLSGIKSFLKYLKKRKI 107 + + T+ LS ++ AFI R T+K + ++ R+LS + S KYL + Sbjct: 66 VDLTTLEHLSKKDMEAFILYLRERPSLNTYSTKKGVSQTTINRTLSALSSLYKYLTEEVE 125 Query: 108 TTESNILNMRNL-------KKSNSLP-RALNEKQALTLVDNVLLHTSHETKWID------ 153 RN+ KK +L RA N KQ L L D + + K + Sbjct: 126 NEHGEPYFYRNVMKKVATKKKRETLAARAENIKQKLFLGDETMAFLDYVDKEYEYKLSNR 185 Query: 154 ---------ARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVP 201 R+ AI+ LL G+R+SEA++L +++ M R GK D + + Sbjct: 186 AKASFRKNKERDLAIIALLLASGIRLSEAVNLDLKDVNLNMMLVEVTRKGGKRDSVNVAA 245 Query: 202 LLP-------SVRKA--ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 SVRK E D+ F L +RG+ + ++ ++ + + Sbjct: 246 FAKPHLEAYLSVRKDRYQAEKQDVAFF-------LTAYRGLPNR-IDASSIEKMVGKYSE 297 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV---NSKNGGD 308 + T H LRH+ AT L + LGH T +YT++ KN D Sbjct: 298 --SFKIRVTPHKLRHTLATRLYDTTKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354 >gi|28465873|dbj|BAC57490.1| transposaseB [Staphylococcus aureus] Length = 630 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 68/282 (24%), Positives = 116/282 (41%), Gaps = 32/282 (11%) Query: 38 SYECDTRQFLI-FLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS--- 93 SY D Q L F F + +Q + QL+ EI A++S+ I ++ +S Sbjct: 236 SYVSDIAQRLKEFFNFLDMKFKQVQRVHQLTRVEIEAYLSELNMMGIKPSTITGRISILE 295 Query: 94 GIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWID 153 G+ S L L+ + ++ I + K + PR ++E +++ + H ++I Sbjct: 296 GLFSTLLRLEWDDVPSKILIYSEDYPKIPRAKPRFIDE----FVLEQLNSHLDKLPEYI- 350 Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI----QGKGDKIRIVPLLPSVRKA 209 + + ++ CG+RISE +L +++D+ Q K K IVP+ V Sbjct: 351 ---ATMTMIVQECGMRISELCTLKKGCLLEDKDGDYFLKYYQWKMKKEHIVPISKEVVLL 407 Query: 210 ILEYYDLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQ------RYIRQLRRYLGLPLS 259 I D ++ + P LF G PL F+ Y + + LG Sbjct: 408 IKVRED------KVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDKLGEIYR 461 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 AH RHS T +++NG +Q LGH T Y ++ Sbjct: 462 FHAHAFRHSVGTRMINNGVPQHIVQKFLGHESPEMTSRYAHI 503 >gi|300710747|ref|YP_003736561.1| phage integrase family protein [Halalkalicoccus jeotgali B3] gi|299124430|gb|ADJ14769.1| phage integrase family protein [Halalkalicoccus jeotgali B3] Length = 253 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/183 (26%), Positives = 78/183 (42%), Gaps = 43/183 (23%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEY 213 RN ++ L + G+R+ E S+ I D Q T I I + Y Sbjct: 72 GRNELLIRLQFNTGMRVGELASIEMDEI-DRQET--------SIYIPSFKSKSPSSRTVY 122 Query: 214 YDLCPFDLNLNIQLPLFRG--IRGKPL---------NPGVFQRYIRQL------------ 250 Y+ D ++ L +RG + GK + NP V YI Q+ Sbjct: 123 YNPEYIDFLMDEYLDGYRGKNLVGKDIDTYLFPTQTNPHVTTDYINQIVKGAAESADLQS 182 Query: 251 --------RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 +R L + T+HTLRHS+A + +G + R++Q++LGH +L TT+IY + Sbjct: 183 TAGSYAGGKRKLNM---ITSHTLRHSYAVQAIKSGINPRNLQALLGHEKLETTEIYMKMA 239 Query: 303 SKN 305 ++ Sbjct: 240 EED 242 >gi|220930678|ref|YP_002507587.1| integrase family protein [Clostridium cellulolyticum H10] gi|220001006|gb|ACL77607.1| integrase family protein [Clostridium cellulolyticum H10] Length = 423 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 83/193 (43%), Gaps = 47/193 (24%) Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 +ALN+ Q +D L +K+ + + GLR EAL+LT +I D + Sbjct: 204 KALNDTQ----LDAFLYQIGRRSKYF-----MYAFFMLNTGLRPGEALALTRSDI--DFT 252 Query: 187 TLRIQGKGDKI----------------RIVPLLPSVRKAILEYYDLC-----PFDLNLNI 225 T +I+ I R VP+ PS ++L+ Y L P D Sbjct: 253 TNKIKVTKTYIEKLKKVQNSTKTASSRRKVPI-PSEMISLLKEYMLQQPKKEPTD----- 306 Query: 226 QLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS---TTAHTLRHSFATHLLSNGGDLRS 282 PLF+ GK + G Y+R+ +Y G HT+RH+FA+ L D++ Sbjct: 307 --PLFQTATGKRPSQG----YLRKRFKYAGASAGCEWVNLHTMRHTFASRLFKKKVDIKV 360 Query: 283 IQSILGHFRLSTT 295 I +LGH +STT Sbjct: 361 ISELLGHKDVSTT 373 >gi|57650158|ref|YP_185756.1| pathogenicity island protein, integrase [Staphylococcus aureus subsp. aureus COL] gi|262053200|ref|ZP_06025357.1| pathogenicity island protein, integrase [Staphylococcus aureus 930918-3] gi|282926173|ref|ZP_06333808.1| integrase, superantigen-encoding pathogenicity islands SaPI [Staphylococcus aureus A9765] gi|15625530|gb|AAL04148.1|AF410775_24 integrase-like protein [Staphylococcus aureus subsp. aureus COL] gi|57284344|gb|AAW36438.1| pathogenicity island protein, integrase [Staphylococcus aureus subsp. aureus COL] gi|259158906|gb|EEW43993.1| pathogenicity island protein, integrase [Staphylococcus aureus 930918-3] gi|282592314|gb|EFB97331.1| integrase, superantigen-encoding pathogenicity islands SaPI [Staphylococcus aureus A9765] Length = 406 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 30/171 (17%) Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGK---------GDKIRIVPLLPS------------ 205 G+RI E L++ ++I D +L I G G ++ S Sbjct: 230 GMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSC 289 Query: 206 --VRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 ++KAILE ++ LN N +F +G P+ F + +R+ + +G+ Sbjct: 290 EILKKAILENKKDSKWNDGYLNRNF---VFTNHKGNPMQTERFNKILREAAKDVGIDKEV 346 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310 ++H LRHS + L G L++I +GH TT IY++V + D M Sbjct: 347 SSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMM 397 >gi|16799149|ref|NP_469417.1| hypothetical protein lin0071 [Listeria innocua Clip11262] gi|16412491|emb|CAC95304.1| lin0071 [Listeria innocua Clip11262] Length = 400 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 4/75 (5%) Query: 229 LFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSIL 287 LF + GKP+ P ++QR+ R L R+ LP+ H LRH+ AT LL+ G D++ IQ L Sbjct: 312 LFADMEGKPIRPDSIYQRWKRFLERH-NLPV-IRFHDLRHTSATLLLNKGRDIKIIQERL 369 Query: 288 GH-FRLSTTQIYTNV 301 H ++T+ IY +V Sbjct: 370 RHKSSVTTSNIYAHV 384 >gi|149916530|ref|ZP_01905046.1| Integrase [Roseobacter sp. AzwK-3b] gi|149809569|gb|EDM69426.1| Integrase [Roseobacter sp. AzwK-3b] Length = 188 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 21/191 (10%) Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178 +K++ +L +A ++K+AL + T+ R+ IL GLR E +L Sbjct: 1 MKQAQTLSQA-DQKRALAYCN---------TRRHSLRDRTILQFSILAGLRAKEIAALRI 50 Query: 179 QNIMD------DQSTL-RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231 ++ D DQ TL R Q KG R V + +++ +L+ Y D + N PLF+ Sbjct: 51 GDVYDASGQVRDQFTLHRSQTKGHHARTVYVSAKLKR-VLDQYRTQVADQDQND--PLFQ 107 Query: 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291 + + + + + GL + ++H+ R +F T L G ++R + + GH Sbjct: 108 TQQRTAFSANTMCQLFLNIYKACGLN-NASSHSGRRTFITRLAEQGVNVRLLAELAGHRH 166 Query: 292 LSTTQIYTNVN 302 +STTQ Y +VN Sbjct: 167 ISTTQRYIDVN 177 >gi|323965422|gb|EGB60877.1| phage integrase [Escherichia coli M863] gi|327250221|gb|EGE61940.1| phage integrase family protein [Escherichia coli STEC_7v] Length = 198 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 66/158 (41%), Gaps = 2/158 (1%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILE 212 AR+ ++ L Y G+RISE L L Q++ ++ + I+ + V PL R+A+ Sbjct: 26 ARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVER 85 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 + + +F RG L+ R IR G T H LRH+ Sbjct: 86 WTQERTNWKGADQTDAIFISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGYE 145 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN-GGDW 309 L G D R IQ LGH + T YT N+ G W Sbjct: 146 LAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLW 183 >gi|303239113|ref|ZP_07325643.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302593451|gb|EFL63169.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 326 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 64/153 (41%), Gaps = 22/153 (14%) Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDL---CP 218 L CGLR+SEA +L +++ + L I + K DK R VPL P + L++Y+ C Sbjct: 149 LACCGLRVSEATNLKLKDVDFTKGVLLIREAKNDKKRYVPLSPKLTNDFLDFYETIHKCS 208 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-----LSTTAHTLRHSFATHL 273 + F R F R+ + G+ H LRH+FA Sbjct: 209 EQEDY-----FFPNARKSVYASNHFYNRFREALWHCGIEHKGRGFGPRVHDLRHTFAVRC 263 Query: 274 L----SNGGD----LRSIQSILGHFRLSTTQIY 298 + N D L + + LGH+ +S TQ Y Sbjct: 264 MQKFDKNKKDIVLSLPYLSAYLGHYDISKTQKY 296 >gi|301329889|ref|ZP_07222612.1| site-specific recombinase, phage integrase family [Escherichia coli MS 78-1] gi|300844032|gb|EFK71792.1| site-specific recombinase, phage integrase family [Escherichia coli MS 78-1] Length = 188 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 67/148 (45%), Gaps = 5/148 (3%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDL 221 L Y LR+S+ S+ +I D L Q G+ +R V L + ++ I + P + Sbjct: 36 LGYELMLRVSDLRSIRYDDIKGDHLVLSQQKTGESVR-VRLTDTAKRIIAARREANPDHV 94 Query: 222 NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281 L +QL R +GKP++ I LGL LST H++R S T NG D+ Sbjct: 95 YL-LQLDSHRS-KGKPVSRSKLHEEISYAGEKLGLNLST--HSMRKSKPTIGYDNGEDIA 150 Query: 282 SIQSILGHFRLSTTQIYTNVNSKNGGDW 309 I LGH LS+T Y + D+ Sbjct: 151 VISKALGHKSLSSTLHYIGATQRKVDDF 178 >gi|292656400|ref|YP_003536297.1| XerC/D-like integrase [Haloferax volcanii DS2] gi|291370519|gb|ADE02746.1| XerC/D-like integrase [Haloferax volcanii DS2] Length = 310 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 66/287 (22%), Positives = 115/287 (40%), Gaps = 35/287 (12%) Query: 30 GLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 G S+ TL +Y I FY EE ++ I ++ + + + + + Sbjct: 28 GRSERTLNAYS------RILKKFYHEEFPELRP-EDTEVFHIEDYVMRLAQRDLSQNTKR 80 Query: 90 RSLSGIKSFLKYLKKR----KITTESNILNMRNL-KKSNSLPRALNEKQALTLVDNVLLH 144 R L + +F Y KR KIT + + + K+ P + ++ N+ Sbjct: 81 RYLESLSAFFSYAMKRPRFEKITGNPAAVVLEEIPKQVRDRPDCATWENGRQIIHNIS-- 138 Query: 145 TSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLL 203 D R+ + +L G R++EAL + ++M ++ +R++ KG K +VP+ Sbjct: 139 --------DPRDKTVATVLAKTGCRLTEALEIQVDDLMLEEGFIRLRKRKGGKQTVVPID 190 Query: 204 PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLST- 260 KAI + F N LF IRG+ ++ QR +++ G+ P Sbjct: 191 QETIKAIQRF----QFIRNGRGTDYLFVSIRGERVSKTSVQRAVKKAAEEAGIMEPGEDR 246 Query: 261 -----TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 T HT R F T + + G ++ I G T IYT V+ Sbjct: 247 FHKKFTPHTYRTVFTTLMRNQGMPDHILRYIRGDSNDETMDIYTRVD 293 >gi|289551321|ref|YP_003472225.1| pathogenicity island protein, integrase [Staphylococcus lugdunensis HKU09-01] gi|289180853|gb|ADC88098.1| pathogenicity island protein, integrase [Staphylococcus lugdunensis HKU09-01] Length = 406 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 30/171 (17%) Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGK---------GDKIRIVPLLPS------------ 205 G+RI E L++ ++I D +L I G G ++ S Sbjct: 230 GMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSC 289 Query: 206 --VRKAILEYYDLCPFD---LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 ++KAILE ++ LN N +F +G P+ F + +R+ + +G+ Sbjct: 290 EILKKAILENKKDSKWNDGYLNRNF---IFTNHKGNPMQTERFNKILREAAKDVGIDKEV 346 Query: 261 TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWM 310 ++H LRHS + L G L++I +GH TT IY++V + D M Sbjct: 347 SSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMM 397 >gi|83649365|ref|YP_437800.1| integrase [Hahella chejuensis KCTC 2396] gi|83637408|gb|ABC33375.1| Integrase [Hahella chejuensis KCTC 2396] Length = 337 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 67/158 (42%), Gaps = 19/158 (12%) Query: 154 ARNSAILYLLYGC---GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAI 210 +RN +L + C G R EA L + I ++ + K K R VP+ + I Sbjct: 186 SRNPNVLAMSKICLATGARWGEAEKLNAEQIRHNKVHF-VGTKNSKSRAVPISEELAVEI 244 Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA 270 L + LFRG + F+R ++ R L LP H LRH+FA Sbjct: 245 LS---------GRAERGRLFRGAGSEE----AFERAVK--RAGLTLPHGQLTHILRHTFA 289 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 +H + N G++ ++ ILGH L T Y + + D Sbjct: 290 SHYMINDGNILKLKYILGHASLDMTIRYAKLAPAHLAD 327 >gi|331672347|ref|ZP_08373138.1| integrase for prophage [Escherichia coli TA280] gi|331070542|gb|EGI41906.1| integrase for prophage [Escherichia coli TA280] Length = 403 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/187 (24%), Positives = 81/187 (43%), Gaps = 30/187 (16%) Query: 124 SLPRALNEKQALTLVDNVLLHTSHETKWID-----ARNSAILYLLY----GCGLRISEAL 174 +LP L + + T+ + + +HE + I+ R + IL L+ G R EA+ Sbjct: 206 TLPNPLEKMRKFTIAEKEMAWLTHE-QIIELLSDCKRQNPILALVVKICLSTGARWREAI 264 Query: 175 SLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIR 234 +LT + + T ++ KG K R +P+ + + I+ L F+ Sbjct: 265 NLTRSQVTKYRITF-VRTKGKKNRSIPISKELYEEIMA---LDGFNF------------- 307 Query: 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLST 294 FQ + + LP H LRH+FA H + +GG++ ++Q ILGH + Sbjct: 308 ---FTDCYFQFLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKM 364 Query: 295 TQIYTNV 301 T Y ++ Sbjct: 365 TMRYAHL 371 >gi|295089982|emb|CBK76089.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum K10] Length = 329 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 57/258 (22%), Positives = 109/258 (42%), Gaps = 31/258 (12%) Query: 77 KRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS--LPRALNEKQA 134 KR Q +++ +S ++ FL+YL+ + ++ M + K++ +P +E++ Sbjct: 60 KRLHQVNAPKTVSDKVSYLRKFLRYLQYK-----GYVVFMPDCPKTSDSYMPYVFSEEEI 114 Query: 135 LTLVDNVLL----HTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 L+ + H + +T+ D +L +L GCG R+ E L+ +++ + I Sbjct: 115 QILLSSADQWCDRHKNSKTRQADMEFCMLLRMLLGCGFRLGEPLTAKVKDVNFSSGIILI 174 Query: 191 -QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI--RGKPLNPGVFQRYI 247 K +K R +P+ ++ + +LE Y + + + LF G + G+F Sbjct: 175 RHAKNNKQRAIPMNETLTE-MLERYCIA-MGIKAEPESYLFPSPVKEGAAASKGIFDLRF 232 Query: 248 RQLRRYLGLPLSTTAHT-------LRHSFATHLLS----NG----GDLRSIQSILGHFRL 292 R L GL + AH+ RH FA H + NG + + LGH + Sbjct: 233 RNLLMETGLYVPGKAHSRGQCLHCFRHYFAIHSFAQAEKNGRSTDDSVPFLSVYLGHHDM 292 Query: 293 STTQIYTNVNSKNGGDWM 310 T+ Y N ++M Sbjct: 293 DETEKYLKFNGDMFPEYM 310 >gi|225868545|ref|YP_002744493.1| tyrosine recombinase XerC [Streptococcus equi subsp. zooepidemicus] gi|259710442|sp|C0MFD9|XERS_STRS7 RecName: Full=Tyrosine recombinase xerS gi|225701821|emb|CAW99258.1| tyrosine recombinase XerC [Streptococcus equi subsp. zooepidemicus] Length = 356 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 73/299 (24%), Positives = 117/299 (39%), Gaps = 58/299 (19%) Query: 58 ITIQTIRQLSYTEIRAFISKRR---------TQK-IGDRSLKRSLSGIKSFLKYLKKRKI 107 + + T+ LS ++ AFI R T+K + ++ R+LS + S KYL + Sbjct: 66 VDLTTLEHLSKKDMEAFILYLRERPSLNTYSTKKGVSQTTINRTLSALSSLYKYLTEEVE 125 Query: 108 TTESNILNMRNL-------KKSNSLP-RALNEKQALTLVDNVLLHTSHETKWID------ 153 RN+ KK +L RA N KQ L L D + + K + Sbjct: 126 NEHGEPYFYRNVMKKVATKKKRETLAARAENIKQKLFLGDETMAFLDYVDKEYEHKLSNR 185 Query: 154 ---------ARNSAILYLLYGCGLRISEALSLTPQNI---MDDQSTLRIQGKGDKIRIVP 201 R+ AI+ LL G+R+SEA++L +++ M R GK D + + Sbjct: 186 AKASFRKNKERDLAIIALLLASGIRLSEAVNLDLKDVNLNMMLVEVTRKGGKRDSVNVAA 245 Query: 202 LLP-------SVRKA--ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 SVRK E D+ F L +RG+ + ++ ++ + + Sbjct: 246 FAKPHLEAYLSVRKDRYQAEKQDVAFF-------LTAYRGLPNR-IDASSIEKMVGKYSE 297 Query: 253 YLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV---NSKNGGD 308 + T H LRH+ AT L + LGH T +YT++ KN D Sbjct: 298 --SFKIRVTPHKLRHTLATRLYDTTKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALD 354 >gi|169344270|ref|ZP_02865251.1| tyrosine recombinase [Clostridium perfringens C str. JGS1495] gi|169297601|gb|EDS79702.1| tyrosine recombinase [Clostridium perfringens C str. JGS1495] Length = 109 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/45 (53%), Positives = 33/45 (73%), Gaps = 1/45 (2%) Query: 261 TAHTLRHSFATHLLSNGG-DLRSIQSILGHFRLSTTQIYTNVNSK 304 T H LRH+ AT + G D+RS+Q+ILGH +STTQIYT+V+ + Sbjct: 50 TPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTTQIYTHVDDE 94 >gi|302668605|ref|YP_003833053.1| tyrosine recombinase XerC4 [Butyrivibrio proteoclasticus B316] gi|302397569|gb|ADL36471.1| tyrosine recombinase XerC4 [Butyrivibrio proteoclasticus B316] Length = 379 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/159 (24%), Positives = 71/159 (44%), Gaps = 9/159 (5%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGD-----KIRIVPLLPSVRKA 209 R+ AI+Y++ G GLR+SE ++ NI S + + KGD V L V Sbjct: 206 RDKAIVYMILGTGLRVSELCAINCANISYQLSYINVYRKGDGDSKETTDEVYLSDEVMGI 265 Query: 210 ILEYYDLCPFDLNLNIQ--LPLFRGIRGKPLNPGVFQRYIRQLR-RYLGLPLSTTAHTLR 266 +L+Y ++ + N + LF + + P + +++ + LG + HTLR Sbjct: 266 LLDYINIARDQIGANEENYDALFLSSLHRRMTPRAIELMVKEYADKALGTDNNVHPHTLR 325 Query: 267 HSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSK 304 +F T D+ + +++ H + T Q Y ++K Sbjct: 326 ATFGTRYYRKWKDISATSTVMNHSGIEITAQYYVKEDAK 364 >gi|189466894|ref|ZP_03015679.1| hypothetical protein BACINT_03276 [Bacteroides intestinalis DSM 17393] gi|189435158|gb|EDV04143.1| hypothetical protein BACINT_03276 [Bacteroides intestinalis DSM 17393] Length = 407 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 19/151 (12%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTL------RIQGKGDKIRIVPLLPSVRKAI--L 211 L+ C GL +A L I+ D + R + K +K R + +P + AI L Sbjct: 249 FLFSCFTGLAFIDAKELKRTEIIKDNNGKMWIRKGRHKMKKEKARCISNVPLITPAIEIL 308 Query: 212 EYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 E Y+ P + ++ LPLF Y++Q+ + + T H RH+FAT Sbjct: 309 EKYEDHPTCIEKDVCLPLFCN--------QTMNSYLKQIATLCNIDKNLTTHVARHTFAT 360 Query: 272 HL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + L+N L ++ ++GH TQ Y V Sbjct: 361 TITLANKVSLENVAKMMGHASTRMTQHYARV 391 >gi|94442328|dbj|BAE93663.1| integron integrase [uncultured bacterium] Length = 211 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 69/153 (45%), Gaps = 37/153 (24%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKG--DKIRIVP--LLPSVRKAILEY 213 I LLYG GLR++E+L L Q+I Q+ + I+ GKG D++ I+P L P +++ + + Sbjct: 59 ITQLLYGAGLRLNESLRLRVQDIDFTQNQILIRDGKGAKDRVTILPQSLQPPLQEHLRQV 118 Query: 214 YDLCPFDLNLN---IQLP--LFRGI---------------------------RGKPLNPG 241 L DL + LP L R I R L+ Sbjct: 119 RILHDQDLEAGYGAVYLPDALARKIPNAAREWPWQWVFPASRISKDPRTGILRRHHLDSS 178 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 V Q+ +R R +P T H RHSFATHLL Sbjct: 179 VVQKAVRDAARRADIPKRVTPHVFRHSFATHLL 211 >gi|76788652|ref|YP_329239.1| prophage LambdaSa03, site-specific recombinase phage integrase family protein [Streptococcus agalactiae A909] gi|76563709|gb|ABA46293.1| prophage LambdaSa03, site-specific recombinase, phage integrase family [Streptococcus agalactiae A909] Length = 380 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 73/169 (43%), Gaps = 32/169 (18%) Query: 163 LYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI-------RIVP-LLPSVRKAIL--- 211 L GC RI EA+S+ P NI TL++ G D+ + P L S R+ I+ Sbjct: 205 LNGC--RIGEAISIEPDNIDFKNKTLQLHGTYDRTNGYINGEKTSPKTLASYRETIMTKR 262 Query: 212 ------EYYDLCPFDLNLNIQLPLFRGI-------RGKPLNPGVFQRYIRQLRRYLGLPL 258 E + + N N P +R + G P+ F +++ L P+ Sbjct: 263 EMEIIQELEFINELEKNTN---PRYRDMGYIFTTRNGVPIQINSFNLALKKANERLEQPI 319 Query: 259 ST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSK 304 + T+H RH+ + L N L++I +GH TT QIYT++ K Sbjct: 320 NKNITSHIFRHTLVSRLAENNVPLKAIMDRVGHADAKTTVQIYTHITKK 368 >gi|301308954|ref|ZP_07214899.1| integrase [Bacteroides sp. 20_3] gi|300832980|gb|EFK63605.1| integrase [Bacteroides sp. 20_3] Length = 379 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 68/160 (42%), Gaps = 32/160 (20%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219 L+GC G+ + +LT N+++ L I K K + PF Sbjct: 225 FLFGCWTGISFIDIKNLTTDNVVEINGALWIVSKRQKTGV------------------PF 266 Query: 220 DLNLNIQLPLFRGIRGKPL-------NPG---VFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 + L + +P+ R +P N G + + I+ + R G+ + H RHSF Sbjct: 267 QVKL-MDIPMQIIKRYEPFRKDKRLFNIGSLDMVNKRIKSIARKCGIEKPVSFHLSRHSF 325 Query: 270 ATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV-NSKNGGD 308 A L+ G + S+ ILGH + TTQIY V N+K D Sbjct: 326 AVMALNYGMPIESVSKILGHTDIKTTQIYAKVTNTKLNSD 365 >gi|300854665|ref|YP_003779649.1| putative integrase/recombinase [Clostridium ljungdahlii DSM 13528] gi|300434780|gb|ADK14547.1| putative integrase/recombinase [Clostridium ljungdahlii DSM 13528] Length = 199 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/154 (24%), Positives = 73/154 (47%), Gaps = 6/154 (3%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQG-KGDKIRIVPLLPSVRKAILE 212 R+ AI + Y CGLR SE + ++ + L + KG + L + A+ + Sbjct: 33 VRDLAIFRVAYRCGLRASEIALIKLEDYNASKGELYCKRLKGSCNNTIRLDKKTKDALDK 92 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAH--TLRHSFA 270 Y + +L+ N ++ LF+ + +P++ +++ Y + + H L+H+ A Sbjct: 93 Y--IHESNLSSNSEV-LFKSQKNRPISRQTLDYLMKKYCSYSNIHDKSKYHFHALKHTTA 149 Query: 271 THLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 HL + D++ +Q LGH ++ T+IY +K Sbjct: 150 VHLAESDMDIKELQWWLGHRSVTNTEIYFQFTTK 183 >gi|289524475|ref|ZP_06441329.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502285|gb|EFD23449.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 137 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 14/125 (11%) Query: 74 FISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL----KKSNSLPRAL 129 F+ ++ SL+R + I+S+ +YL T E + + L K LPR L Sbjct: 23 FLKAMASEGKSKASLQRYAAAIRSWNRYL-----TIEGWVDGEQWLPSLPSKEQKLPRIL 77 Query: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 +E + L+ + + + R+ + L YGCGLR SE SL ++I TLR Sbjct: 78 SEGEI-----ERLISSCRDGSVLGGRDETLFELAYGCGLRASEVCSLALEDIDWRAGTLR 132 Query: 190 IQGKG 194 + GKG Sbjct: 133 VIGKG 137 >gi|258647236|ref|ZP_05734705.1| integrase [Prevotella tannerae ATCC 51259] gi|260852992|gb|EEX72861.1| integrase [Prevotella tannerae ATCC 51259] Length = 409 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 55/197 (27%), Positives = 91/197 (46%), Gaps = 36/197 (18%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLT 177 K+ + P+AL+ + + D V+ H T I AR+ L+ C G ++A+S+T Sbjct: 217 KQKENTPKALSRESFEKIRDLVI--PEHRTSHILARD----LFLFACYTGTSYADAVSVT 270 Query: 178 PQNIM-DDQSTL--RIQGKGDKIR-IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI 233 N+ +D+ +L + + K +++R V LLP I +Y D Sbjct: 271 RNNLFTNDEGSLWLKYRRKKNELRACVKLLPEALTLIEKYRD------------------ 312 Query: 234 RGKP-LNPGVFQRYIRQLRRYLGLPLST----TAHTLRHSFATHL-LSNGGDLRSIQSIL 287 +P L P ++ +R+L + L + T H RHSFA+ + L G + +I +L Sbjct: 313 DERPTLFPMLYHPNLRRLMKSLAVLADIKEDLTYHAGRHSFASLITLEVGVPIETICKML 372 Query: 288 GHFRLSTTQIYTNVNSK 304 GH L TTQ+Y V K Sbjct: 373 GHSNLQTTQVYAKVTPK 389 >gi|167751365|ref|ZP_02423492.1| hypothetical protein EUBSIR_02351 [Eubacterium siraeum DSM 15702] gi|167655611|gb|EDR99740.1| hypothetical protein EUBSIR_02351 [Eubacterium siraeum DSM 15702] Length = 391 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 2/69 (2%) Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-T 294 KP++P ++ L + LPL H LRH+FATH L+ G D +++ ILGH S T Sbjct: 298 KPMHPDYAYHRLKTLLKQAELPL-IRFHDLRHTFATHALAGGVDAKTLSGILGHTNASFT 356 Query: 295 TQIYTNVNS 303 YT+V + Sbjct: 357 LDTYTHVTT 365 >gi|325965385|ref|YP_004243290.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans Sphe3] gi|323471472|gb|ADX75156.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans Sphe3] Length = 368 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 76/175 (43%), Gaps = 14/175 (8%) Query: 142 LLHTSHETKWIDA-RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG-DKIRI 199 ++ S + W A R++ +L + Y GLR +E L + + R G K+R Sbjct: 166 VIAASGKKGWQAAYRDAVMLKVAYSYGLRFNELRHLQTIDFATNPQARRFGKAGVCKVRF 225 Query: 200 ------VPLLPSVRKAILEYYDLCPFDLNLNIQ-----LPLFRGIRGKPLNPGVFQRYIR 248 P P + ++ D N + L LF RG + R +R Sbjct: 226 GKSRKGSPHKPRSVLTVFDWTAGVIEDWLANGRGTLDTLDLFPSERGGLICESTLLRRLR 285 Query: 249 QLRRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + LGLP+ H+LR S+ATHLL +G D R +Q +GH STT IY V+ Sbjct: 286 RYLAELGLPMDGLDLHSLRRSYATHLLEDGWDPRFVQHQMGHEHASTTGIYQFVS 340 >gi|320457972|dbj|BAJ68593.1| phage integrase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 401 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 73/176 (41%), Gaps = 27/176 (15%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-----QGKGD-------------K 196 R S L LL G GLRI E L ++I D L + QG D Sbjct: 174 RLSIHLALLVG-GLRIGEVCGLQLRDIDLDHRLLYVRHSVTQGPDDLGEYRLDETKTPES 232 Query: 197 IRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRY 253 R+VP+ V + I E+ D CP + + LF IR + LNP QR R R+ Sbjct: 233 HRVVPIPAPVCRLIREHIDRFCP---DRDPDTMLFHAIRHPERVLNPTTIQRQFRTARKR 289 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGD 308 + T H+LR + AT + GG LR LGH + + Y V ++ D Sbjct: 290 INRE-DVTFHSLRATHATMFMIQGGTLRETMDELGHVDVDVAVRCYQRVVPRHRRD 344 >gi|218130594|ref|ZP_03459398.1| hypothetical protein BACEGG_02183 [Bacteroides eggerthii DSM 20697] gi|217986938|gb|EEC53269.1| hypothetical protein BACEGG_02183 [Bacteroides eggerthii DSM 20697] Length = 88 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 33/46 (71%) Query: 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 L L + H RHS+A+ LL NG D+ +I+S++GH + TTQIYT++ Sbjct: 24 LILLLSFHVARHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHI 69 >gi|152973649|ref|YP_001338689.1| resolvase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|294496725|ref|YP_003560418.1| resolvase [Klebsiella pneumoniae] gi|150958431|gb|ABR80459.1| resolvase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|293339434|gb|ADE43988.1| resolvase [Klebsiella pneumoniae] Length = 260 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 19/44 (43%), Positives = 30/44 (68%) Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+ H+L G L+ +QS++GH +S+T++YT V Sbjct: 188 VPVTPHTFRHSYGMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|153809442|ref|ZP_01962110.1| hypothetical protein BACCAC_03756 [Bacteroides caccae ATCC 43185] gi|149127902|gb|EDM19124.1| hypothetical protein BACCAC_03756 [Bacteroides caccae ATCC 43185] Length = 207 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 22/168 (13%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQS----------TLRIQGKGDKIRIVPLLPSVRKA 209 ++ C GL + +L ++++ D + L + K I +PLLP V A Sbjct: 46 FIFACFTGLAFVDVSTLKKEDMVQDNNGDWWIRKGRIKLMHRRKASSICNIPLLP-VPLA 104 Query: 210 ILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSF 269 IL+ Y+ P + LP+ P N + Y++++ + G+ + T H RH+F Sbjct: 105 ILKKYENNPVCIKKGYCLPV-------PCNQKM-NSYLKEIADFCGIKKNITTHVARHTF 156 Query: 270 ATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ 316 T + L+N L+ + +LGH TQ Y V + + M+ + +Q Sbjct: 157 GTTITLANNVPLQDVSVMLGHASTRMTQHYARVMNASLKKSMIHVKEQ 204 >gi|161522422|ref|YP_001585351.1| integrase family protein [Burkholderia multivorans ATCC 17616] gi|189348702|ref|YP_001941898.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616] gi|160345975|gb|ABX19059.1| integrase family protein [Burkholderia multivorans ATCC 17616] gi|189338840|dbj|BAG47908.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616] Length = 575 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 78/320 (24%), Positives = 128/320 (40%), Gaps = 70/320 (21%) Query: 27 IERG--LSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIG 84 +ERG LS LT + D + FL T + I +R + R F + + Sbjct: 258 VERGRALSSLTTE----DALAYRAFLRRPTPHERWIGPVRPRGAPDWRPF-----SGALS 308 Query: 85 DRSLKRSLSGIKSFLKYLKKRKITTESNI--LNMRNLKKSNSLPRALNEKQALTLVDNVL 142 RS +LS + + ++L +++ + + +R+ + ++ AL+ A T + +L Sbjct: 309 ARSAAYALSVLGAMFRWLIEQRYVLANPFAGVKVRDSRGAS----ALDTSHAFTEGEWLL 364 Query: 143 LHT---SHETKWIDA-----------RNSAILYLLYGCGLRISEALSLTPQNIMDD---Q 185 + T E + D R IL Y GLR SE + T +I D Sbjct: 365 VRTIADGLEFRKTDVPAAAWTPAAAQRLRFILDFGYATGLRASELVGATLGDIDTDAHGD 424 Query: 186 STLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP----- 240 + L++ GKG K V L P R A+ Y + +LP+ +R +P P Sbjct: 425 AWLKVVGKGSKAARVALPPLARTALDRYL--------VARRLPVT-PVRWRPDTPLISRL 475 Query: 241 --------------GVFQRYIRQLRRYLGL--PL------STTAHTLRHSFATHLLSNGG 278 V QR+ Q + P + H +RH+ ATH L+ G Sbjct: 476 TEDGAAPITSVRLWKVMQRFFVQTADLVEADNPALAQKLRQASPHWMRHTHATHALARGA 535 Query: 279 DLRSIQSILGHFRLSTTQIY 298 +L +++ L H +STT IY Sbjct: 536 ELTTVRDNLRHASISTTSIY 555 >gi|154175422|ref|YP_001408733.1| oxygen-independent coproporphyrinogen III oxidase [Campylobacter curvus 525.92] gi|112802099|gb|EAT99443.1| oxygen-independent coproporphyrinogen III oxidase [Campylobacter curvus 525.92] Length = 267 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/176 (22%), Positives = 76/176 (43%), Gaps = 14/176 (7%) Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 LL H+ KW ++ L G+R+SE + ++++ I KG K+R + Sbjct: 104 CLLKDGHK-KWY-----FVVRFLAATGVRVSELVKFKAEHVV--LGYFDIYSKGAKMRRI 155 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 + S++ + ++ D +F KP+ P +++ R GL S Sbjct: 156 YIPKSLQASAKKWLDEIGIKSGF-----IFLNRFSKPITPRGIASELKKFARIYGLDQSV 210 Query: 261 T-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYD 315 H+ RH FA + L++ D+ + ++GH + TT+IY + D + + D Sbjct: 211 IYPHSFRHLFAKNFLASCNDIAFLADLMGHTSIQTTRIYLRRTAAEQRDLIDSVID 266 >gi|218263866|ref|ZP_03477835.1| hypothetical protein PRABACTJOHN_03525 [Parabacteroides johnsonii DSM 18315] gi|218222465|gb|EEC95115.1| hypothetical protein PRABACTJOHN_03525 [Parabacteroides johnsonii DSM 18315] Length = 354 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 22/150 (14%) Query: 163 LYGC--GLRISEALSLTPQNIMDDQSTLR----IQGKGDKIRIVPLLPSVRKAILEYYDL 216 L+ C LRIS+ LSL ++I+D + + I K I+P+ L Sbjct: 206 LFSCMTSLRISDILSLCWEDIVDYSAGGKCVHIITQKNKAEDIIPISEEA---------L 256 Query: 217 CPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS 275 N + +F+G+ R P +++ R G+ + T H+ R +FAT + Sbjct: 257 GLIGYNSEKKGFVFKGLMRSWTQIP------MKEWIRSAGITKNITFHSYRRTFATLQAA 310 Query: 276 NGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 G D+R+IQSI+ H ++TTQ Y V N Sbjct: 311 AGTDIRTIQSIMAHKSITTTQRYIKVVDAN 340 >gi|152996970|ref|YP_001341805.1| phage integrase family protein [Marinomonas sp. MWYL1] gi|150837894|gb|ABR71870.1| phage integrase family protein [Marinomonas sp. MWYL1] Length = 283 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 10/139 (7%) Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYD-LC 217 + L Y G+RISE L ++ +++ QGKG + R V S+++ + Y+ Sbjct: 124 MVLAYTTGMRISEVNELRVNDLDLTHHCIKVRQGKGQQDRYVLFPQSLQQVLGRYWQRYE 183 Query: 218 PFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN 276 P D+ + G+ + +PL+ + ++ + G+ H+LRH+FA H L Sbjct: 184 PCDV-------VVYGLDKHRPLHSKYLRLETKEAAKRAGIQKCIRFHSLRHAFACHQLLA 236 Query: 277 GGDLRSIQSILGHFRLSTT 295 G L +Q++LGH ++ TT Sbjct: 237 GMPLLRLQALLGHKQIQTT 255 >gi|300776492|ref|ZP_07086350.1| mobilizable transposon [Chryseobacterium gleum ATCC 35910] gi|300502002|gb|EFK33142.1| mobilizable transposon [Chryseobacterium gleum ATCC 35910] Length = 429 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 16/138 (11%) Query: 167 GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ 226 GLR + L + I + ++IQ + K + V P +AI LC + Sbjct: 276 GLRHCDIKRLKWKEIDVQSNRIKIQFRQKKTKGVEYTPISEQAI----HLCG-----TPR 326 Query: 227 LP---LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSI 283 LP +F ++ +++++ G+ T H RH+FAT LS G D+ ++ Sbjct: 327 LPEQLVFENLQDSSWISRPLEKWVKSA----GITKHITFHCFRHTFATLQLSLGTDIYTV 382 Query: 284 QSILGHFRLSTTQIYTNV 301 +LGH +++TTQ+Y V Sbjct: 383 SKMLGHSKVTTTQVYAKV 400 >gi|91791328|ref|YP_552278.1| phage integrase [Polaromonas sp. JS666] gi|91701209|gb|ABE47380.1| phage integrase [Polaromonas sp. JS666] Length = 557 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 71/305 (23%), Positives = 117/305 (38%), Gaps = 50/305 (16%) Query: 27 IERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 +ERG + +L + D + FL T + R S E R F + R Sbjct: 251 VERGCALSSLATE--DAVAYRAFLRRPTPRSRWVGPPRPRSSPEWRPFAGG-----LSAR 303 Query: 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTS 146 S LS + + ++L +++ + +K P ++ ++ + + LL T Sbjct: 304 SAAHGLSVLSAMFRWLIEQRYVLANP---FSGIKVRGVQPAGMDTSRSFSDAEWALLRTV 360 Query: 147 HET-----KWIDARNSAILYLL---YGCGLRISEALSLTPQNIMDDQST--LRIQGKGDK 196 + W A + ++L Y GLR SE + T I D L + GKG + Sbjct: 361 ADGLEWSYGWQPAAAQRLRFVLDFAYATGLRASELVHATLGAIEVDHEERWLHVVGKGHR 420 Query: 197 IRIVPLLPSVRKAILEYY---DLCPFDLNLNIQLPLFRGIRGKP-LNPG----VFQRYIR 248 V L P R A+ Y L + +PL I G+ +N V +R+ Sbjct: 421 AGRVTLPPLARSALDRYLVQRGLPTTPQKWSPDIPLIGNIGGEAGINRARLWVVMKRFFA 480 Query: 249 ---------------QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293 +LRR T H +RH+ A+H L G +L +++ L H ++ Sbjct: 481 TVADILVEDNPTLAAKLRR-------ATPHWMRHTHASHALQGGAELTAVRDNLRHSSIA 533 Query: 294 TTQIY 298 TT IY Sbjct: 534 TTSIY 538 >gi|41409062|ref|NP_961898.1| hypothetical protein MAP2964c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397421|gb|AAS05281.1| hypothetical protein MAP_2964c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 372 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 71/170 (41%), Gaps = 20/170 (11%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG--------------DKIRI 199 AR++A+L +Y GLR +EA L ++ + + G G K R Sbjct: 181 ARDAAVLKTIYAFGLRRTEASRLDLVDLRRNSQAPQFGGFGVVMVRYGKAPKGAPPKRRT 240 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLP-----LFRGIRGKPLNPGVFQRYIRQLRRYL 254 V L+P + ++E D ++ P L+ RG L+P R Sbjct: 241 VLLVPEM-DWVVETLDQWLTEIRPRFSPPDRHPALWVTERGGRLSPRSINEAFVAARDDA 299 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 L S H LRHS TH G R +Q +GH STT IYT+V+++ Sbjct: 300 RLDRSLNLHCLRHSAVTHWTEFGYPARFVQEQVGHAHASTTSIYTHVSNE 349 >gi|319641879|ref|ZP_07996554.1| integrase [Bacteroides sp. 3_1_40A] gi|317386498|gb|EFV67402.1| integrase [Bacteroides sp. 3_1_40A] Length = 382 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 60/185 (32%), Positives = 82/185 (44%), Gaps = 30/185 (16%) Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGC--GLRISEALSLTPQNIMDDQSTL 188 E+ ALT + L + K +D N L L GC GL S+ L MDD TL Sbjct: 179 ERNALTSDELHKLLSFRPHKSVD--NHCRLIFLLGCFTGLAFSDLKKLR----MDDVYTL 232 Query: 189 R--------IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240 + K I+PLLP + + IL + FR P N Sbjct: 233 SDGRRYISLCRTKTQNRCIIPLLP-IAEEILSIVS------GERTEGLFFREF---PTN- 281 Query: 241 GVFQRYIRQLRRYLGLPLST--TAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQI 297 F R IR++ GLP T T+HT RH+FAT + L NG + + +LGH +STT++ Sbjct: 282 SHFNRKIREIILKAGLPPHTEATSHTARHTFATTICLENGLPIEIVSKMLGHRFISTTEL 341 Query: 298 YTNVN 302 Y V+ Sbjct: 342 YAKVS 346 >gi|153005509|ref|YP_001379834.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5] gi|152029082|gb|ABS26850.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5] Length = 381 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/188 (23%), Positives = 83/188 (44%), Gaps = 20/188 (10%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ----------GKGDKIRIVP 201 +D R + L GLR+ E L+L ++ + +++Q KG K R+VP Sbjct: 198 VDPRTHVAVLLGGDAGLRLGEILALEWSDLDFTRGLMKVQRSECDGAVTLPKGGKPRVVP 257 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 + ++ A+ + L + L+ GI +P+ + I R GL Sbjct: 258 MTARLKAALHAHRHLKGPRI-------LYEGI--EPITKWPLKWLIDVAERRAGLRQGGR 308 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQ-THPS 320 H LRH+F + L + + +I+ + GH + TT Y ++++ + + + DQ T+ + Sbjct: 309 VHILRHTFCSRLAARNVPMLTIKGLAGHQSVETTMRYLHLSASAPVEGIRALEDQGTNRA 368 Query: 321 ITQKDKKN 328 Q +KN Sbjct: 369 QNQASEKN 376 >gi|331698984|ref|YP_004335223.1| integrase family protein [Pseudonocardia dioxanivorans CB1190] gi|326953673|gb|AEA27370.1| integrase family protein [Pseudonocardia dioxanivorans CB1190] Length = 408 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 28/166 (16%) Query: 152 IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ--------------GKGDKI 197 I+ R + + GCGLR E L L+P ++ ++ L+++ KG K Sbjct: 201 IEGRFQLAVVVGAGCGLRQGEILGLSPDDVDRERMVLQVRRQLRIVDRTLVFALPKGGKT 260 Query: 198 RIVPLLPSVRKAILEYYD-LCPFDLNLNIQLP---------LFRGIRGKPLNPGVFQRYI 247 R+VPL V + I + + P + L Q P L G G+ + +F + I Sbjct: 261 RVVPLSRGVLERITSHIEEHPPTPITLPWQDPAGEPTPVPMLMTGENGRLYSGDLFTKVI 320 Query: 248 RQ-LRRYLGLPLSTTA---HTLRHSFATHLLSNGGDLRSIQSILGH 289 Q R G+ A H LRH +A+ LLS G ++ + + LGH Sbjct: 321 WQGAFRSAGIEYRKRADGMHALRHFYASVLLSQGVSIKELAAYLGH 366 >gi|116254511|ref|YP_770347.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv. viciae 3841] gi|115259159|emb|CAK10274.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv. viciae 3841] Length = 331 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 69/313 (22%), Positives = 123/313 (39%), Gaps = 26/313 (8%) Query: 23 QNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK 82 Q L +R +S T+ SY + L F T + + + L I AF+ + + Sbjct: 15 QRLARQRNVSPHTIASYRDTFKLLLKFAHRRTGKYPSALRLEDLDAELIVAFLDDLDSGR 74 Query: 83 -IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV--- 138 + L+ I+ F ++L + I ++ ++P + K+ + + Sbjct: 75 HASPATYNLRLTAIRGFFRFLAFEEPAYSGQI------QRVLAIPGKIGSKREVQFLLRN 128 Query: 139 -DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDK 196 +L W+ R+ +L G+R+SE + L + + + +R GKG K Sbjct: 129 EIEAILSAPDRRTWVGRRDYVLLLTAVQTGMRLSELVGLDRSAVTIGTGAHIRCFGKGRK 188 Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQ----RYIRQLRR 252 R P+ + + + D P N N LF + G ++P Q +Y+ + Sbjct: 189 ERTTPITRMLNATLKAWLDEPPVG-NGNA---LFPTVHGGQMSPDAVQYLLAKYVLAASK 244 Query: 253 YLGLPLST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY--TNVNSKNGG 307 L L + + H LRHS A LL G D I LGH +TQ Y ++ K Sbjct: 245 GC-LSLRSKRVSPHVLRHSAAMELLDAGVDSTVISLWLGHESTRSTQPYLHAHLAIKEAA 303 Query: 308 DWMMEIYDQTHPS 320 ++ +D+ P Sbjct: 304 LAKIDPFDKQSPG 316 >gi|167621620|ref|YP_001672128.1| integrase family protein [Caulobacter sp. K31] gi|167645969|ref|YP_001683632.1| integrase family protein [Caulobacter sp. K31] gi|167646192|ref|YP_001683855.1| integrase family protein [Caulobacter sp. K31] gi|167348399|gb|ABZ71134.1| integrase family protein [Caulobacter sp. K31] gi|167348622|gb|ABZ71357.1| integrase family protein [Caulobacter sp. K31] gi|167351743|gb|ABZ74469.1| integrase family protein [Caulobacter sp. K31] Length = 403 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 73/314 (23%), Positives = 128/314 (40%), Gaps = 49/314 (15%) Query: 8 EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL---AFYTEEKITIQTIR 64 EI LL + + +L +RGLS ++ R+FL + A ++ + Sbjct: 102 EIARATLLADFETYLAK---QRGLSPRSIPHSVGFARRFLDYRFGKALPDPGRLCPADV- 157 Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--S 122 + + E S RR + + + ++ FL+YL R T + L++ K + Sbjct: 158 -IGFME-HVLASARRDKTVA--------THVRIFLQYLFARGATATNLALSVPKTAKRWA 207 Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182 +PR L+ ++ +V + H AR+ A+L ++ GLR +E +++ +I Sbjct: 208 ARMPRHLSPDGVEAVLASVRDNHLH-----GARDYAMLLVMARLGLRAAEVVAIQLDDID 262 Query: 183 DDQSTLRIQGKGDKIRIVPLLPSVRKAILEYY--DLCPFDLNLNIQLPLFRGIRG--KPL 238 L ++GKG +PL V A+ Y + P LF R +P Sbjct: 263 WRAGELMVRGKGKLHDRLPLTAEVGDALSRYLREERGPATCRT-----LFVAHRAPHRPF 317 Query: 239 NPGVFQRYI----------RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILG 288 G I + + Y+G +H LRHS AT L++ G L + +L Sbjct: 318 KDGTIVNAILKDALKATGQKPVTPYVG------SHLLRHSLATQLVNTGASLDEVGDMLR 371 Query: 289 HFRLSTTQIYTNVN 302 H S+T IY ++ Sbjct: 372 HRSRSSTMIYARLD 385 >gi|218129371|ref|ZP_03458175.1| hypothetical protein BACEGG_00948 [Bacteroides eggerthii DSM 20697] gi|317475337|ref|ZP_07934602.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|217988441|gb|EEC54763.1| hypothetical protein BACEGG_00948 [Bacteroides eggerthii DSM 20697] gi|316908504|gb|EFV30193.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 405 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 26/153 (16%) Query: 162 LLYGC--GLRISEALSLTPQNI---MDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYD 215 ++ C GL ++ +L P++I + + +RI+ K D +PL P V + ILE Y+ Sbjct: 244 FIFSCMTGLAYADTRALHPRHIGKTSEGRRYIRIRRAKTDVEAFIPLHP-VAEQILELYN 302 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNP----GVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 GKP+ P V + + LG+ + + H RHSF T Sbjct: 303 TTD---------------EGKPVFPLPVRDVLWYEVHGMGVALGMRENLSYHMARHSFGT 347 Query: 272 HLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 L+ G + SI ++GH + +TQ+Y V + Sbjct: 348 LTLTAGIPIESIARMMGHTNIDSTQVYAQVTDR 380 >gi|94266129|ref|ZP_01289843.1| Phage integrase [delta proteobacterium MLMS-1] gi|93453304|gb|EAT03747.1| Phage integrase [delta proteobacterium MLMS-1] Length = 465 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 31/192 (16%) Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178 + +N R L E +A L + + + K+I L LL GC R SE L+ Sbjct: 285 FEANNGRERYLTEDEAARLKAALESSENTQLKYI-----VSLLLLLGC--RKSELLNSRW 337 Query: 179 QNIMDDQSTLRIQ-GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237 ++ + + RI K K R VPL + + + L P+ + Sbjct: 338 EDFDLARRSWRIPLSKSGKARYVPLSTAALEVLASIPRLSPYVVP--------------- 382 Query: 238 LNPGVFQRYIRQLRRY------LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291 NP Q ++ R + GLP H LRHSFA+ L+++G + + +LGH + Sbjct: 383 -NPKTLQPFVSVFRSWDTARKKAGLP-DVRMHDLRHSFASFLVNSGRSIYEVSQLLGHSQ 440 Query: 292 LSTTQIYTNVNS 303 L TTQ Y+++++ Sbjct: 441 LKTTQRYSHLSN 452 >gi|296269704|ref|YP_003652336.1| integrase family protein [Thermobispora bispora DSM 43833] gi|296092491|gb|ADG88443.1| integrase family protein [Thermobispora bispora DSM 43833] Length = 317 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 65/150 (43%), Gaps = 18/150 (12%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRK------ 208 R+ A+L LLY G R +E +LT + +LR++GKGDK R V L + + Sbjct: 152 RDGALLALLYSTGCRRAEVAALTLADFDPWDRSLRVRGKGDKERFVYLTVAAAERLDRWL 211 Query: 209 AILEYYD---LCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 A+ D CP + ++L G + R+L T H Sbjct: 212 AVRGRADGPLFCPINKAGRLRLAHMTGQ-------AIADIVTRRL--TAAGAAKRTPHDF 262 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 R +F LL G DL + Q+++GH +TT Sbjct: 263 RRTFIGELLDAGVDLATAQALVGHASPATT 292 >gi|91782176|ref|YP_557382.1| putative bacteriophage integrase [Burkholderia xenovorans LB400] gi|91686130|gb|ABE29330.1| Putative bacteriophage integrase [Burkholderia xenovorans LB400] Length = 444 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 70/168 (41%), Gaps = 34/168 (20%) Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ---GKGDKIRIVPLLP 204 + ++D A+L L G GLR E + L ++ D +R++ KGD+ R VP+ Sbjct: 266 DAAYVDHVKPAVLVAL-GTGLRRGEQMQLQWPDVDFDNERIRVRKATSKGDRTRYVPMCD 324 Query: 205 SVRKAILEY-YDLCPFDLNLNIQLPLFRGIRGKPLNPG-VFQRYIRQLRRYLGLPL---- 258 V + + + C P+ P VF + ++RR +G P Sbjct: 325 EVIQVLKAWKAQTC-----------------SGPVQPILVFGNALGEVRREIG-PYRHVL 366 Query: 259 ------STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 S T H LRHSFAT L +G + I LGH L T Y + Sbjct: 367 AEAKIDSFTWHDLRHSFATRLAQHGVPIERIGKWLGHSSLQQTMRYAH 414 >gi|291525337|emb|CBK90924.1| Site-specific recombinase XerC [Eubacterium rectale DSM 17629] Length = 377 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 8/101 (7%) Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 + +R +P+ + + +YY N +++ + + +P++P +Q R Sbjct: 263 NSLREIPISDFIYDKLSDYY-------NTSMKGDSYFLKKNQPMDPRTYQNKFHIYIREA 315 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 G+ +T H LRH+FAT+ +S+G D +S+ ILGH ++ T Sbjct: 316 GIG-NTHFHALRHTFATNCISSGADAKSVSEILGHSNVNIT 355 >gi|262040800|ref|ZP_06014029.1| integrase/recombinase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041885|gb|EEW42927.1| integrase/recombinase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 218 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 7/112 (6%) Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHET- 149 +L G+ L+ + + +I +RNL+ S LPR +AL + L + ET Sbjct: 106 ALKGVAKEAWMLRLMDVESFQHIRAVRNLRGSR-LPRG----RALPPEEIRALFRACETD 160 Query: 150 -KWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 I R++A+L ++ GCGLR SEA+ L +I+ LR+ GKG+K R+ Sbjct: 161 KSSIGVRDAAMLAIILGCGLRRSEAVGLDFSDIVTHDRALRVLGKGNKERLA 212 >gi|219667494|ref|YP_002457929.1| integrase family protein [Desulfitobacterium hafniense DCB-2] gi|219537754|gb|ACL19493.1| integrase family protein [Desulfitobacterium hafniense DCB-2] Length = 317 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 5/162 (3%) Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRI 199 +LL + + + RN I+ L G G+R E S+ ++I S L + + K K R Sbjct: 132 ILLKKPNMKSFAEYRNWVIINFLLGTGVRALELRSIRIKDIDLKMSMLIVPRTKNGKQRY 191 Query: 200 VPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259 +P+ S+ K + +Y D + + LF G+ L Q I + + G+ Sbjct: 192 IPISKSLNKILTDYLDYRKAESEEDF---LFCNEFGQYLPRTTLQIGITKYCKKRGVN-K 247 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + H RH+FA + N G L +Q ILGH L Y N+ Sbjct: 248 YSLHLFRHTFANMWIVNNGSLFILQKILGHASLKQVNHYANL 289 >gi|270296259|ref|ZP_06202459.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270273663|gb|EFA19525.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 418 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 14/108 (12%) Query: 196 KIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 K + V +P +A Y+LC P + +L +F G+ +P R +++ Sbjct: 303 KTKGVEYMPISEQA----YNLCGEPKEG----ELLVFAGL----PDPSWINRPVKKWIEA 350 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G+ T H RHS+AT L+ G D+ ++ +LGH + TTQ+Y V Sbjct: 351 AGITKHITFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKV 398 >gi|255012236|ref|ZP_05284362.1| integrase [Bacteroides fragilis 3_1_12] gi|313150077|ref|ZP_07812270.1| integrase [Bacteroides fragilis 3_1_12] gi|313138845|gb|EFR56204.1| integrase [Bacteroides fragilis 3_1_12] Length = 403 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 66/152 (43%), Gaps = 25/152 (16%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRI---VPLLPSVRKAILEYYDL 216 ++GC G+ + +LT N++ +L I K I V L+ S K I Y Sbjct: 248 FIFGCLTGISFIDIKNLTTDNLVTINGSLWISSVRQKTNIPFRVKLMESACKIIDRYE-- 305 Query: 217 CPFDLNLNIQLPLFRGIRGKPL----NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 PF RGK L G ++Q+ G+ T H RHS+A Sbjct: 306 -PFR-------------RGKRLFNFYRNGWTNVLLKQIAAECGINKHLTFHMSRHSYAVM 351 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 +SNG + S+ +LGH +++TTQ Y + ++ Sbjct: 352 AISNGMPIESVSKVLGHTKITTTQHYAKITTE 383 >gi|126725709|ref|ZP_01741551.1| Integrase [Rhodobacterales bacterium HTCC2150] gi|126704913|gb|EBA04004.1| Integrase [Rhodobacterales bacterium HTCC2150] Length = 189 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 75/170 (44%), Gaps = 11/170 (6%) Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 LL ++ AR++ +L + CGLRI E +L +I+D T+R + D RI Sbjct: 15 LLDVTNSCSRYAARDATMLLFTHLCGLRIGEVAALRFDDILDANGTVRDEMTLDAARIKS 74 Query: 202 LLPSVRKAILEYY---DLCPFDLNLNIQLP----LFRGIRGKPLNPGVFQRYIRQLRRYL 254 RK L LC + +LN Q P LF + + +++++L Sbjct: 75 --KRARKIFLPKQMQRQLCEYVNSLNKQ-PLHGYLFSTQKQAHFSANTATQHLQRLYARA 131 Query: 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 G+ T+H+ R + T L G + + + GH + TTQ Y VN + Sbjct: 132 GIA-GATSHSGRRIWLTALSQKGVSVFVLADMAGHRNIQTTQRYVTVNDE 180 >gi|323172233|gb|EFZ57871.1| integrase [Escherichia coli LT-68] Length = 347 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 20/143 (13%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 ++ + G R EA++LT + + T ++ KG K R +P+ + Y ++ Sbjct: 197 VVKICLSTGARWREAVNLTRSQVTKYRITF-VRTKGKKNRSIPISKEL------YEEIVA 249 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278 D G K FQ R + LP H LRH+FA H + +GG Sbjct: 250 LD-----------GF--KLFTDCYFQFLAVMDRTSIVLPRGQLTHVLRHTFAAHFMMSGG 296 Query: 279 DLRSIQSILGHFRLSTTQIYTNV 301 ++ ++Q ILGH + T Y ++ Sbjct: 297 NILALQKILGHHDIKMTMRYAHL 319 >gi|290473457|ref|YP_003466324.1| tyrosine recombinase, regulator of fimA [Xenorhabdus bovienii SS-2004] gi|289172757|emb|CBJ79528.1| tyrosine recombinase, regulator of fimA [Xenorhabdus bovienii SS-2004] Length = 197 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 65/149 (43%), Gaps = 1/149 (0%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILEY 213 R+ +LYL Y GLR+SE SL +I T+ I+ + P+ + ++ IL++ Sbjct: 25 RDQCLLYLTYIHGLRVSELTSLKVSDIDIAGKTIYIKRLKNGFSTTHPISKTEKELILKW 84 Query: 214 YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 + + L LF +G L+ + + GL + H LRHS L Sbjct: 85 LKIRNNNSVYCASLWLFPSRKGGKLSRQWVHVLMGRYGEQAGLSIRLHPHKLRHSCGFEL 144 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + G D R IQ LGH + T YT N Sbjct: 145 ANQGLDTRLIQDYLGHRNIRHTMHYTASN 173 >gi|262273295|ref|ZP_06051110.1| integrase [Grimontia hollisae CIP 101886] gi|262222668|gb|EEY73978.1| integrase [Grimontia hollisae CIP 101886] Length = 346 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 40/83 (48%) Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 P L ++L + G P+ P R + + LP H RH+FA+H + +G Sbjct: 242 PISEELYLELIRYDEEHGLPVQPVRKMLEKRLAKWFPRLPDGQKTHVFRHTFASHFMQHG 301 Query: 278 GDLRSIQSILGHFRLSTTQIYTN 300 GD+ ++Q ILGH + T Y + Sbjct: 302 GDILTLQRILGHANIQMTMKYAH 324 >gi|298531262|ref|ZP_07018662.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298508872|gb|EFI32778.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 394 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 17/149 (11%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKA--ILE--YY 214 I+ L G R SEA++L Q + + I + +K ++ ++P R A +LE Sbjct: 230 IIEFLILTGARRSEAVNLPWQELDMAKGVWIIPAERNKAKVKKVIPLSRGALNVLERRKE 289 Query: 215 DLCPFDLNLNIQLPLFRGIR-GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHL 273 + C + +F G+P+ F ++R+ G+P H LRH+FA+ L Sbjct: 290 NGCEY---------VFPNPETGEPMK--HFHGTWDRIRKKAGIP-DVRIHDLRHNFASLL 337 Query: 274 LSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 +++G L +Q +LGH +STTQ Y +++ Sbjct: 338 INSGRSLYEVQKLLGHADISTTQRYAHLS 366 >gi|254303662|ref|ZP_04971020.1| possible bacteriophage integrase/recombinase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323854|gb|EDK89104.1| possible bacteriophage integrase/recombinase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 329 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 58/249 (23%), Positives = 108/249 (43%), Gaps = 21/249 (8%) Query: 61 QTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIK----SFLKYLKKRKITTESNILNM 116 ++I+ ++ ++R ++ QK G+ S K ++ I+ SF +L++ +S + + Sbjct: 88 KSIKHITTNDLREYLD--NYQKEGNAS-KITIDNIRRIFSSFFAWLEEEDHILKSPVRRI 144 Query: 117 RNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 +K + +++ + DN R+ AI+ +L G+R+ E + L Sbjct: 145 HKVKTGTVVKETYSDEAMEIMRDNCK----------SLRDLAIIDMLASTGMRVGELVKL 194 Query: 177 TPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGK 236 ++I + + GKGDK R V + K L Y D N + + L + K Sbjct: 195 NIEDIDFEGRECVVFGKGDKERKV-YFDARTKIHLHNYLKTRDDDNSALFVSLLKP--HK 251 Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 L + +RQL R L + H R + AT + G + +Q +LGH ++ TT Sbjct: 252 RLQISGVEIMLRQLGRKLNIT-KVHPHKFRRTLATKAIDKGMPIEQVQQLLGHQKIDTTL 310 Query: 297 IYTNVNSKN 305 Y V+ N Sbjct: 311 QYAMVSQNN 319 >gi|327184452|gb|AEA32897.1| putative integrase [Lactobacillus amylovorus GRL 1118] Length = 326 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 12/155 (7%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKG--DKIRIVPLLPSVRKAI 210 R+ A+L + GLR E +I + + L +QGKG +K ++ + V AI Sbjct: 153 RDYAMLVTMLTMGLRTIEVSRADIDDIRTKGNMTVLYVQGKGHEEKDDLIRMPQHVESAI 212 Query: 211 LEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST-----TAHTL 265 +Y + + ++ PLF N + R IR++ + + TAH+ Sbjct: 213 RDYLSVRKAN---DLSKPLFVSTSNHNANGRMTTRSIRRIVKTAFISAGYDSPRLTAHST 269 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 RH+ AT L NG L+ Q +L H + TT+IY + Sbjct: 270 RHTAATLSLLNGATLQQTQELLRHRNIGTTEIYAH 304 >gi|148243781|ref|YP_001220021.1| phage integrase family protein [Acidiphilium cryptum JF-5] gi|325113222|ref|YP_004277168.1| phage integrase family protein [Acidiphilium multivorum AIU301] gi|325113260|ref|YP_004277206.1| phage integrase family protein [Acidiphilium multivorum AIU301] gi|326402545|ref|YP_004282626.1| phage integrase family protein [Acidiphilium multivorum AIU301] gi|146400344|gb|ABQ28879.1| phage integrase family protein [Acidiphilium cryptum JF-5] gi|325049406|dbj|BAJ79744.1| phage integrase family protein [Acidiphilium multivorum AIU301] gi|325052689|dbj|BAJ83026.1| phage integrase family protein [Acidiphilium multivorum AIU301] gi|325052727|dbj|BAJ83064.1| phage integrase family protein [Acidiphilium multivorum AIU301] Length = 403 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 58/242 (23%), Positives = 99/242 (40%), Gaps = 46/242 (19%) Query: 84 GDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRALNEKQALTLVDNV 141 G R K + ++ FL+YL T + L++ K LPR L+ + ++ V Sbjct: 167 GARRDKTVATHVRIFLQYLFGSGATATNLALSVPRAAKRWGARLPRHLSPEGVEAVLACV 226 Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 H AR+ A+L ++ GLR +E +++ +I L ++GKG VP Sbjct: 227 RDSPRH-----GARDYAMLLIMARLGLRAAEVIAIQLDDIDWRAGELLVRGKGKLHDRVP 281 Query: 202 LLPSVRKAILEYY------DLC------------PFDLNLNIQLPLFRGIRG---KPLNP 240 + V +A+ Y C PF + + L ++ KP+ P Sbjct: 282 ISAEVGEALCRYLREERGPASCRTMFVTHRAPYRPFKDSQIVNAVLKDALKATGQKPVTP 341 Query: 241 GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 Y+G +H LRHS AT L+++G L + +L H ++T IY Sbjct: 342 ------------YVG------SHLLRHSLATQLVNSGASLDEVGDVLRHRSRTSTMIYAR 383 Query: 301 VN 302 ++ Sbjct: 384 LD 385 >gi|84393354|ref|ZP_00992114.1| Integrase [Vibrio splendidus 12B01] gi|84376070|gb|EAP92958.1| Integrase [Vibrio splendidus 12B01] Length = 340 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 21/143 (14%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218 ++ L G R E+ +LT + + T + KG K R VP+ P E YD+ Sbjct: 202 VIKLCLATGGRFKESATLTGAQLTKYKVTF-TKTKGKKNRSVPISP-------ELYDV-- 251 Query: 219 FDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGG 278 +++ G PL + R + +++ AH LRH+FA++ + NGG Sbjct: 252 ----------IYKEGSG-PLFSIGYSTVYRFIVKHIPRLSQQAAHVLRHTFASYYMMNGG 300 Query: 279 DLRSIQSILGHFRLSTTQIYTNV 301 ++ ++Q ILGH + T Y ++ Sbjct: 301 NIIALQRILGHSDIKQTMRYAHL 323 >gi|213691872|ref|YP_002322458.1| phage integrase family protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523333|gb|ACJ52080.1| phage integrase family protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 447 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 73/176 (41%), Gaps = 27/176 (15%) Query: 155 RNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-----QGKGD-------------K 196 R S L LL G GLRI E L ++I D L + QG D Sbjct: 220 RLSIHLALLVG-GLRIGEVCGLQLRDIDLDHRLLYVRHSVTQGPDDLGEYRLDETKTPES 278 Query: 197 IRIVPLLPSVRKAILEYYD-LCPFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRY 253 R+VP+ V + I E+ D CP + + LF IR + LNP QR R R+ Sbjct: 279 HRVVPIPAPVCRLIREHIDRFCP---DRDPDTMLFHAIRHPERVLNPTTIQRQFRTARKR 335 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS-TTQIYTNVNSKNGGD 308 + T H+LR + AT + GG LR LGH + + Y V ++ D Sbjct: 336 INRE-DVTFHSLRATHATMFMIQGGTLRETMDELGHVDVDVAVRCYQRVVPRHRRD 390 >gi|150006166|ref|YP_001300910.1| transposase [Bacteroides vulgatus ATCC 8482] gi|149934590|gb|ABR41288.1| transposase [Bacteroides vulgatus ATCC 8482] Length = 308 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 25/156 (16%) Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219 +Y+ GLRI E +L +I + T+ + ++I I+ + ++ P Sbjct: 133 IYISLCTGLRIGEVCALKWSDINVSEGTITVNRTIERIYIIDGTKKHTELVIN----TPK 188 Query: 220 DLNLNIQLPLFRGIRG--KPL------------------NPGVFQRYIRQLRRYLGLPLS 259 N ++P+ + + KPL P ++ Y +L LG+P Sbjct: 189 TQNSCREIPMTKELLAMVKPLKKVVNEDFYVLTNDEYPTEPRTYRNYYGKLMEKLGIP-K 247 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 H LRHSFAT + G D +++ +LGH +STT Sbjct: 248 LKYHGLRHSFATRCIEAGCDYKTVSVLLGHSNISTT 283 >gi|120435585|ref|YP_861271.1| phage integrase family protein [Gramella forsetii KT0803] gi|120435707|ref|YP_861393.1| phage integrase family protein [Gramella forsetii KT0803] gi|117577735|emb|CAL66204.1| phage integrase family protein [Gramella forsetii KT0803] gi|117577857|emb|CAL66326.1| phage integrase family protein [Gramella forsetii KT0803] Length = 330 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 15/154 (9%) Query: 162 LLYGCGLRISEALSLTPQNIMDDQSTLRIQ-GKGDKIRIVPL---LPSVRKAILEYYDLC 217 LLY G+R+ EA++L +++ ++ L ++ K K RI+P+ L SV + LEY +L Sbjct: 153 LLYCTGIRMGEAIALKDEDVNLEEGYLLVRDSKNGKQRIIPISQSLVSVCREYLEYRNLL 212 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFA----THL 273 P + F + G V + + L R G+P S H LRH+FA + Sbjct: 213 PSRKTSSGY--FFVKVNGHKCGQSVRAWFKKCLDR-AGIPGSARLHDLRHTFAVTSLAQM 269 Query: 274 LSNGGDLRS----IQSILGHFRLSTTQIYTNVNS 303 +G DL + + + LGH + T Y + S Sbjct: 270 AESGIDLYASLPILSNYLGHQSIGATNHYVRLTS 303 >gi|48477839|ref|YP_023545.1| site-specific integrase/recombinase [Picrophilus torridus DSM 9790] gi|48430487|gb|AAT43352.1| hypothetical site-specific integrase/recombinase [Picrophilus torridus DSM 9790] Length = 119 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 2/77 (2%) Query: 237 PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 P+ Y++++++ L AH RH++A +LL +G D+ +I+ +LGH L TTQ Sbjct: 19 PMKRQAVDLYLKRMQK--DLKFKIHAHKFRHTYAKNLLRSGVDIETIRIMLGHEDLGTTQ 76 Query: 297 IYTNVNSKNGGDWMMEI 313 IYT + + + M I Sbjct: 77 IYTVLGADEALERMKRI 93 >gi|54303342|ref|YP_133335.1| bacteriophage integrase [Photobacterium profundum SS9] gi|46916772|emb|CAG23535.1| Hypothetical bacteriophage integrase [Photobacterium profundum SS9] Length = 326 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/241 (22%), Positives = 97/241 (40%), Gaps = 36/241 (14%) Query: 65 QLSYTEIRAFISKRRTQKIGDRSLKRS---LSGIKSFLKYLKKRKITTESNILNMRNLKK 121 Q++ I + S R + I R++ + LSG+ F + + + E I+ +R LK+ Sbjct: 102 QVTKKRIIDYRSDRLSSGISPRTINKEVALLSGV--FTQMINAEEYHHEHPIIGLRKLKE 159 Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI 181 L+ + + +L H S + K I + G R +EA L +N+ Sbjct: 160 RKQEMAFLSSSE----ISFLLQHASGDMK-------KIAKICLATGARWNEANDLRAENV 208 Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241 + T G+ R P+ E +D + + + P + Sbjct: 209 TPYRVTFVATKNGNN-RTTPISK-------ELFDEISSEKSGRLFTPCY----------D 250 Query: 242 VFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 F + + L LP H LRH+FA+H + NGG++ ++Q LGH + T Y + Sbjct: 251 KFYLFFKSLN--FNLPKGQAVHVLRHTFASHFMQNGGNILTLQKALGHATIQQTMEYAHF 308 Query: 302 N 302 + Sbjct: 309 S 309 >gi|158314368|ref|YP_001506876.1| integrase family protein [Frankia sp. EAN1pec] gi|158314559|ref|YP_001507067.1| integrase family protein [Frankia sp. EAN1pec] gi|158109773|gb|ABW11970.1| integrase family protein [Frankia sp. EAN1pec] gi|158109964|gb|ABW12161.1| integrase family protein [Frankia sp. EAN1pec] Length = 355 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 73/172 (42%), Gaps = 26/172 (15%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNI---------MDDQSTLRIQGKGDKIRIVPLLP 204 ARN L+ GLR++EA SL +I + + G G + R+VPL+ Sbjct: 163 ARNYTAARLMAEVGLRVNEARSLDLADIRWELGRFGKLHVRHGKGAHGSGPRERMVPLIN 222 Query: 205 SVRKAILEYYD--LCPFDLNLNIQ-LPLF----RGIRGKP-------LNPGVFQRYIRQL 250 + + Y + FD + PLF R + G P L G+ L Sbjct: 223 HAGQTLRWYVEDVWGHFDEDHTRHGAPLFPSERRNVDGAPARVGYDALRSGLAAAAAEHL 282 Query: 251 RRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + T H LRH A+ + NG DL SIQ +LGH ++TT Y +V+ Sbjct: 283 PAWKS---RLTPHILRHYCASQMYLNGIDLVSIQEMLGHSWVATTMRYVHVH 331 >gi|254497030|ref|ZP_05109859.1| putative integrase/recombinase XerD [Legionella drancourtii LLAP12] gi|254353746|gb|EET12452.1| putative integrase/recombinase XerD [Legionella drancourtii LLAP12] Length = 233 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 15/156 (9%) Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRI---QGKGDKIRIVPLLPSVRKAI---LE 212 I+ +L G+R+SE +++ +I D + RI QGKG K R+VP P+ ++ + L+ Sbjct: 76 IVKVLLYTGIRVSELINIQLCDI--DLTNCRIKINQGKGKKDRVVPFSPAFKETLALHLK 133 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 Y N N G R + G+ ++ + + R G+ S + H LRH T Sbjct: 134 QYK------NENRMFLFESGFRRHYTDRGI-RKILMRYTRLAGIERSISPHKLRHFLFTW 186 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 L D IQ GH + + +IY+ ++ + D Sbjct: 187 LKKQNIDDAFIQPYSGHAKRDSLEIYSKLSLADAQD 222 >gi|91786615|ref|YP_547567.1| phage integrase [Polaromonas sp. JS666] gi|91695840|gb|ABE42669.1| phage integrase [Polaromonas sp. JS666] Length = 311 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 79/173 (45%), Gaps = 24/173 (13%) Query: 152 IDARNSAI-LYLLYGCGLRISEALSLTPQNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKA 209 IDA S L LLY GLRISEAL+L ++ ++D+ + K K R+VP+ + + Sbjct: 123 IDAHTSRTQLLLLYATGLRISEALNLNLADVDLNDRVLYVRRSKFYKTRLVPIGTDLTQV 182 Query: 210 ILEY----YDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQL------RRYLGLPLS 259 + EY Y P D + P RG+ ++ ++ RQ+ RR+ G Sbjct: 183 LREYARRRYKRSPLDPD----APFLLTSRGERVSRAGAEQAFRQMRSQAKVRRHDGGRYQ 238 Query: 260 TTAHTLRHSFATHLL----SNGGD----LRSIQSILGHFRLSTTQIYTNVNSK 304 H LRH+ A L G D L + + LGH +S TQ Y ++ + Sbjct: 239 PRLHDLRHTAAVTRLVRWYREGVDVQRLLPQLATYLGHVHISGTQCYLSMTPE 291 >gi|300781823|ref|YP_003739058.1| resolvase [Erwinia billingiae Eb661] gi|299060089|emb|CAX53279.1| resolvase [Erwinia billingiae Eb661] Length = 237 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 75/173 (43%), Gaps = 36/173 (20%) Query: 153 DARNSAILYLLYGCGLRISEALSLTPQNIMDDQS-------TL--RIQGKG-----DKI- 197 D R + L+ G RI+EAL +TP+++ D TL R +G+G +K+ Sbjct: 50 DERQRMLFAFLWNTGARITEALMVTPEDLQLDGPRPFVRLRTLKQRSRGRGRPAKDEKVA 109 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY---- 253 R+VPLL F L+ L FR R PL + L++ Sbjct: 110 RVVPLLDGA------------FVRELHRYLATFRPGRRTPLFAVTRKTAWSWLQQATERA 157 Query: 254 --LGLPLSTTA---HTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G+ + T TLRHSFA HL N + +Q+ +GH R +T+ Y V Sbjct: 158 GAAGIAFAVTPVSPRTLRHSFAMHLFLNHVPPKVVQTYMGHERYESTEQYLKV 210 >gi|255994620|ref|ZP_05427755.1| site-specific recombinase, phage integrase family [Eubacterium saphenum ATCC 49989] gi|255993333|gb|EEU03422.1| site-specific recombinase, phage integrase family [Eubacterium saphenum ATCC 49989] Length = 375 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 20/196 (10%) Query: 120 KKSNSLPRALNEKQALTLVDNVL----LHTSHETKW--IDARNSAILYLLYGCGLRISEA 173 K+S +AL + + L ++D V L + + W R+ AIL GLR+ E Sbjct: 162 KQSEREIKALEDNEVLRMLDIVTTGDGLTGAQKRYWKVTKYRDKAILTFFLTYGLRLQEL 221 Query: 174 LSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQL---PLF 230 L + + +I K +K I+ L + +A+ +Y D + LF Sbjct: 222 WQLNLSSFNFQREEFKIYRKRNKESIMHLNGTTAEALRDYLINERNDEKAKKYIDDDALF 281 Query: 231 RGIRGKPLNPGVFQRYIRQL-RRYLGLPLSTTAHT------LRHSFATHLLSNGGDLRSI 283 ++ K + +R IR+L ++Y L + TT H LR + AT L+ G + + Sbjct: 282 LSLQHKRIT----KRQIRELVKKYTSLAIGTTQHNGYSPHKLRATTATSLIGRGESIYDV 337 Query: 284 QSILGHFRLSTTQIYT 299 Q +LGH +++TTQ+Y Sbjct: 338 QLLLGHEQVTTTQLYA 353 >gi|198277079|ref|ZP_03209610.1| hypothetical protein BACPLE_03287 [Bacteroides plebeius DSM 17135] gi|198269577|gb|EDY93847.1| hypothetical protein BACPLE_03287 [Bacteroides plebeius DSM 17135] Length = 418 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 14/108 (12%) Query: 196 KIRIVPLLPSVRKAILEYYDLC--PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRY 253 K + V +P +A Y+LC P + +L +F G+ +P R +++ Sbjct: 303 KTKGVEYMPISEQA----YNLCGEPKEG----ELLVFAGL----PDPSWINRPVKKWIEA 350 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G+ T H RHS+AT L+ G D+ ++ +LGH + TTQ+Y V Sbjct: 351 AGITKHITFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKV 398 >gi|260910292|ref|ZP_05916967.1| integrase [Prevotella sp. oral taxon 472 str. F0295] gi|260635594|gb|EEX53609.1| integrase [Prevotella sp. oral taxon 472 str. F0295] Length = 419 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 27/170 (15%) Query: 162 LLYGC--GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP-----LLPSVRKAILEYY 214 ++ C GL IS+ +L +NI+ ++ L I KG +++ P +LP AI+E Y Sbjct: 250 FVFSCFSGLAISDVRNLREENIVLEEGELCI--KGSRMKTNPPYRVQVLPPAW-AIMERY 306 Query: 215 --DLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 F ++ + G+ ++R +G+ T H RH+F+T Sbjct: 307 IGKRAGFIFDVPTTDIILNGMHF--------------IQRNIGMEGPLTFHKARHTFSTT 352 Query: 273 L-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSI 321 + LSNG + ++ +LGH + TTQIY + + M + D+ H + Sbjct: 353 ICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQEDMTALTDREHSAF 402 >gi|167617449|ref|ZP_02386080.1| Fels-2 prophage protein [Burkholderia thailandensis Bt4] Length = 205 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 16/160 (10%) Query: 149 TKWIDARNSAILYLLYGC---GLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 T + RN +L + C G R EA L I Q ++ K K R VP+ Sbjct: 33 TALAEGRNIHVLLISKVCLATGARWGEAEGLRRTQIKGGQIQF-VKTKSSKARSVPITDV 91 Query: 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTL 265 + + ++ ++ + + LF + F+ + R + LP H L Sbjct: 92 LERELIAHFG----NYGDSDTGRLFEA------SSSAFREAVE--RAGVVLPDGQLTHVL 139 Query: 266 RHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 RH+FA+H + NGG++ ++Q LGH L+ T Y +++ ++ Sbjct: 140 RHTFASHFMMNGGNILALQRALGHHSLTMTMRYAHLSPEH 179 >gi|298375519|ref|ZP_06985476.1| mobilizable transposon, int protein [Bacteroides sp. 3_1_19] gi|298268019|gb|EFI09675.1| mobilizable transposon, int protein [Bacteroides sp. 3_1_19] Length = 347 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 74/148 (50%), Gaps = 21/148 (14%) Query: 163 LYGC--GLRISEALSLTPQN--IMDDQS-TLRIQGKGDKIRIVPLLPSVRKAILEYYDLC 217 L+ C GLRIS+ L+L ++ I DQ LRI+ + K + LP +A Y+LC Sbjct: 204 LFACLTGLRISDILNLQWEDFAIAPDQGYCLRIRTQ--KTQTEATLPISYEA----YELC 257 Query: 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 + +F+G++ +N ++ + G+ T H RHS+A +S G Sbjct: 258 ----GMPDTGKVFKGLKRSMINYP-----LKNWLKKAGITKPITFHGFRHSYAVIQISLG 308 Query: 278 GDLRSIQSILGHFRLSTTQIYTN-VNSK 304 D+ ++ +L H +STTQIY + VN K Sbjct: 309 TDIYTVSKMLTHKNVSTTQIYADLVNVK 336 >gi|254160925|ref|YP_003044033.1| integrase for prophage [Escherichia coli B str. REL606] gi|253972826|gb|ACT38497.1| integrase for prophage [Escherichia coli B str. REL606] gi|253977046|gb|ACT42716.1| integrase for prophage [Escherichia coli BL21(DE3)] Length = 314 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 28/186 (15%) Query: 124 SLPRALNEKQALTLVDNVLLHTSHE--------TKWIDARNSAILYLLYGCGLRISEALS 175 S P L + T+ + + +HE K D + ++ + G R EA++ Sbjct: 130 SYPNPLENMRKFTIAEKEMAWLTHEQIVELLADCKRQDPILALVVKICLSTGARWREAIN 189 Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235 LT + + T ++ KG K R +P+ + + I+ L F+ Sbjct: 190 LTRSQVTKYRITF-VRTKGKKNRSIPISKELYEEIMA---LDGFNF-------------- 231 Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 FQ + + LP H LRH+FA H + +GG++ ++Q ILGH + T Sbjct: 232 --FTDCYFQFLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMT 289 Query: 296 QIYTNV 301 Y ++ Sbjct: 290 MRYAHL 295 >gi|218458041|ref|ZP_03498132.1| site-specific tyrosine recombinase XerC [Rhizobium etli Kim 5] Length = 58 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 26/47 (55%), Positives = 30/47 (63%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL 50 N L I L+ ER WL+NL ER LS+ TL +YE DTRQFL FL Sbjct: 2 NELLVIADPRLMAERAAWLENLARERRLSEHTLDAYERDTRQFLTFL 48 >gi|118477873|ref|YP_895024.1| phage integrase [Bacillus thuringiensis str. Al Hakam] gi|118417098|gb|ABK85517.1| phage integrase [Bacillus thuringiensis str. Al Hakam] Length = 317 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 66/288 (22%), Positives = 125/288 (43%), Gaps = 26/288 (9%) Query: 31 LSKLTLQSYECDTRQFLIFL--AFYTEEKIT---IQTIRQLSYTEIRAFI----SKRRTQ 81 LS+ TL+SYE +F ++L EE+ + I I ++ ++ ++ +RR Sbjct: 19 LSRRTLESYENTLTEFRLWLNGCNGNEEEASSRSITHIEDITSQHVKGYMRYCYQERRNS 78 Query: 82 KIGDRSLKRSLSGIKSFLKYLKKRKITTESN--ILNMRNLKKSNSLPRALNEKQALTLVD 139 ++ L+ IK + YL + E + IL ++N +K ++ L E+Q ++ Sbjct: 79 HT---TVAGKLTNIKVYFNYLANEGLIDERDNPILRVKNPQKDTNV-ETLTEEQVRLMLR 134 Query: 140 NVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNI--MDDQSTLRIQGKGDKI 197 ++ + + R+ ++ L G G R+ E + L ++I D Q GK Sbjct: 135 HLRRRRRVD-DFYHYRDYTLVVFLLGTGARLGEIMDLCWKDIDLKDGQVVFPATGKARTQ 193 Query: 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG----VFQRYIRQLRRY 253 + PL + + EY D + LF G+ L+ VF R ++L+ Sbjct: 194 QGQPLGAKLVSELKEYKQYLEND-TYGLPAYLFTTRTGRKLSREAIKLVFVRLAQELKFE 252 Query: 254 LGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G +AH+LRH + + L+ G +Q ++ H ++ TT Y + Sbjct: 253 YG---RVSAHSLRHFYCSSLIKAGVSPFVVQKLMRHSKIETTMKYVTL 297 >gi|253774150|ref|YP_003036981.1| integrase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|297520846|ref|ZP_06939232.1| integrase family protein [Escherichia coli OP50] gi|242376639|emb|CAQ31349.1| ybl28 [Escherichia coli BL21(DE3)] gi|253325194|gb|ACT29796.1| integrase family protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|332342181|gb|AEE55515.1| phage integrase [Escherichia coli UMNK88] Length = 338 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 28/186 (15%) Query: 124 SLPRALNEKQALTLVDNVLLHTSHE--------TKWIDARNSAILYLLYGCGLRISEALS 175 S P L + T+ + + +HE K D + ++ + G R EA++ Sbjct: 154 SYPNPLENMRKFTIAEKEMAWLTHEQIVELLADCKRQDPILALVVKICLSTGARWREAIN 213 Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRG 235 LT + + T ++ KG K R +P+ + + I+ L F+ Sbjct: 214 LTRSQVTKYRITF-VRTKGKKNRSIPISKELYEEIMA---LDGFNF-------------- 255 Query: 236 KPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 FQ + + LP H LRH+FA H + +GG++ ++Q ILGH + T Sbjct: 256 --FTDCYFQFLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILALQKILGHHDIKMT 313 Query: 296 QIYTNV 301 Y ++ Sbjct: 314 MRYAHL 319 >gi|218514867|ref|ZP_03511707.1| site-specific tyrosine recombinase XerC [Rhizobium etli 8C-3] Length = 60 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 26/47 (55%), Positives = 30/47 (63%) Query: 4 NNLPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFL 50 N L I L+ ER WL+NL ER LS+ TL +YE DTRQFL FL Sbjct: 2 NELLVIADPRLMAERAAWLENLARERRLSEHTLDAYERDTRQFLTFL 48 >gi|187926512|ref|YP_001892857.1| integrase family protein [Ralstonia pickettii 12J] gi|187928816|ref|YP_001899303.1| integrase family protein [Ralstonia pickettii 12J] gi|241589911|ref|YP_002979936.1| integrase family protein [Ralstonia pickettii 12D] gi|241666000|ref|YP_002984359.1| integrase family protein [Ralstonia pickettii 12D] gi|187725706|gb|ACD26871.1| integrase family protein [Ralstonia pickettii 12J] gi|187728266|gb|ACD29430.1| integrase family protein [Ralstonia pickettii 12J] gi|240868027|gb|ACS65687.1| integrase family protein [Ralstonia pickettii 12D] gi|240868623|gb|ACS66282.1| integrase family protein [Ralstonia pickettii 12D] Length = 397 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/175 (22%), Positives = 72/175 (41%), Gaps = 26/175 (14%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMD-------DQSTLRIQGKGDKIRIVPLLPSV 206 AR + +LY GLR++E S + ++ + + GKG K R+VP + Sbjct: 206 ARCRWLFSVLYLAGLRLAEIASTRMGAVFSRRDAAGVERWWIEVHGKGGKTRLVPATDEL 265 Query: 207 RKAILEYYDLC--PFDLNLNIQLPLFRGIRG--KPLNPGVFQRYIRQLRRYLG------- 255 + Y +C P + PL + G KPL+ ++++ + Sbjct: 266 IAELARYRRICGLPPSPQIGETRPLLLPVIGPEKPLSRAAIHLIVKEVFKLAADRVRAQG 325 Query: 256 --------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302 + S ++H LRH+ +H+ DLR ++ GH L+TT +Y + Sbjct: 326 PEFGAQADVLASASSHWLRHTAGSHMSDQQVDLRFVRDNFGHASLATTSVYLHAE 380 >gi|323171324|gb|EFZ56971.1| phage integrase family protein [Escherichia coli LT-68] Length = 192 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 66/158 (41%), Gaps = 2/158 (1%) Query: 154 ARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV-PLLPSVRKAILE 212 AR+ ++ L Y G+RISE L L Q++ ++ + I+ + V PL R+A+ Sbjct: 26 ARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVER 85 Query: 213 YYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH 272 + + +F RG L+ R IR G T H LRH+ Sbjct: 86 WTQERANWKGADRTDAIFISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGYE 145 Query: 273 LLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN-GGDW 309 L G D R IQ LGH + T YT N+ G W Sbjct: 146 LAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLW 183 >gi|295085954|emb|CBK67477.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 386 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 9/111 (8%) Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +V LLP + I +Y + F ++ + P+ G + ++++ G + Sbjct: 268 VVKLLPIAVELIEKYRGVNEFKVSPDRVFPVG--------EIGSMEDSLKRIGEKAGCSV 319 Query: 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN-VNSKNGGD 308 + H RH+FAT LS G L ++Q +LGH + +TQ+Y +N K G D Sbjct: 320 RVSPHVGRHTFATLALSKGMPLETLQKVLGHKTIISTQVYAELINPKIGED 370 >gi|291515473|emb|CBK64683.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 355 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 68/146 (46%), Gaps = 14/146 (9%) Query: 163 LYGC--GLRISEALSLTPQNIMDDQSTLR-IQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219 L+ C LRIS+ L+L + I+D + + + K + ++P +A Sbjct: 207 LFSCLTSLRISDILTLRWEEIVDFAAGGKCVYTVTQKTKTEDIIPISDEA---------- 256 Query: 220 DLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGD 279 L L P G+ K L Q +++ R G+ + T H+ R +FAT + G D Sbjct: 257 -LQLIGYSPEKTGLVFKGLKRCWTQYPMKEWIRTAGITKNITFHSYRRTFATLQAAAGTD 315 Query: 280 LRSIQSILGHFRLSTTQIYTNVNSKN 305 +R+IQSI+ H ++TTQ Y V N Sbjct: 316 IRTIQSIMAHKSITTTQRYMKVVDSN 341 >gi|254885206|ref|ZP_05257916.1| integrase [Bacteroides sp. 4_3_47FAA] gi|254837999|gb|EET18308.1| integrase [Bacteroides sp. 4_3_47FAA] Length = 430 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 69/159 (43%), Gaps = 35/159 (22%) Query: 158 AILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK----------GDKIRIVPL---LP 204 A L+ Y GLR S+ L+P N +++ GK G +IR+ PL Sbjct: 260 AFLFCCY-TGLRYSDFCQLSPANF------IKVNGKRWLHFTSVKTGVEIRL-PLHLLFE 311 Query: 205 SVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 S IL+ Y P + P N V + +R+L G+ T H Sbjct: 312 SRALGILDRY-------------PDIGSLASLPCNSEV-NKQLRKLAGLCGIKKRITYHV 357 Query: 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 RH+ AT L+ G + ++Q +LGH + TTQIY+ V S Sbjct: 358 SRHTCATLLVHQGVAITTVQKLLGHTSVKTTQIYSEVLS 396 >gi|168998697|ref|YP_001687965.1| phage integrase family protein [Klebsiella pneumoniae NTUH-K2044] gi|238549716|dbj|BAH66067.1| resolvase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 259 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 30/44 (68%) Query: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 + T HT RHS+A H+L G L +QS++GH +S+T++YT V Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLNLLQSLMGHKSISSTEVYTKV 231 >gi|255037949|ref|YP_003088570.1| integrase family protein [Dyadobacter fermentans DSM 18053] gi|254950705|gb|ACT95405.1| integrase family protein [Dyadobacter fermentans DSM 18053] Length = 406 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 10/110 (9%) Query: 193 KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRR 252 K D +PLLP+ I+E Y P N + LP+ L+ Y++++ Sbjct: 287 KTDAPTRIPLLPTALD-IIEKYKEHPQCCNKGVVLPV--------LSNQKMNAYLKEIAN 337 Query: 253 YLGLPLSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHFRLSTTQIYTNV 301 G+ + T H RH+FAT + LSN + ++ +LGH L T IY + Sbjct: 338 LCGISKTLTFHIARHTFATTVTLSNKVPIETVSKMLGHRSLKQTMIYAKI 387 >gi|325298924|ref|YP_004258841.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324318477|gb|ADY36368.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 406 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 78/186 (41%), Gaps = 16/186 (8%) Query: 122 SNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG-LRISEALSLTPQN 180 + + RAL++ L ++D H S ++ I Y CG + + LT N Sbjct: 211 TKTAKRALSKDDILKIIDADCSHASERRQF----TQDIFTFSYLCGGISFVDIAHLTGTN 266 Query: 181 IMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD--------LCPFDLNLNIQLPLFRG 232 I++D+ + Q I + +L K I++ Y L P N P+ + Sbjct: 267 IVEDRLLYKRQKTHGSINL--MLTDRAKQIIQKYSYYQRQTGYLFPILHNKRHVTPMQQN 324 Query: 233 IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 R + + +R + LG+ T + RHSFAT L +G ++ I LGH + Sbjct: 325 NRVHKICHQI-NTELRAFAKELGITAEVTTYVARHSFATILKKSGVNIGIISQALGHQDI 383 Query: 293 STTQIY 298 TTQIY Sbjct: 384 KTTQIY 389 >gi|317479188|ref|ZP_07938324.1| phage integrase [Bacteroides sp. 4_1_36] gi|316904632|gb|EFV26450.1| phage integrase [Bacteroides sp. 4_1_36] Length = 409 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 28/154 (18%) Query: 162 LLYGC--GLRISEALSLTPQNIM-DDQSTL---RIQGKGDKIRIVPLLPSVRKAILEYYD 215 L+ C G+ ++A+S+T NI DD+ L ++ K + + V LLP I +Y Sbjct: 253 FLFACYTGVPYADAVSITRDNIYKDDKGDLWLKYLRKKNEYLARVKLLPEAISLIEKY-- 310 Query: 216 LCPFDLNLNIQLPLFRGIRGKPLNPGV----FQRYIRQLRRYLGLPLSTTAHTLRHSFAT 271 R K L P + +R+++ LR G+ H RH+F + Sbjct: 311 ---------------RSDDRKELFPMIHHPNMRRHMKGLRDLAGISCDLVYHMGRHTFGS 355 Query: 272 HL-LSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + L G + +I +LGH L+TTQ+Y V+ K Sbjct: 356 LITLEAGVPIETISKMLGHTNLTTTQLYARVSPK 389 >gi|301309511|ref|ZP_07215453.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3] gi|300832600|gb|EFK63228.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3] Length = 418 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 239 NPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298 +P R I++ G+ T H RHS+AT L+ G D+ ++ +LGH + TTQ+Y Sbjct: 336 DPSWINRPIKKWVVEAGITKHITYHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVY 395 Query: 299 TNV 301 V Sbjct: 396 AKV 398 >gi|265763426|ref|ZP_06091994.1| transposase [Bacteroides sp. 2_1_16] gi|263256034|gb|EEZ27380.1| transposase [Bacteroides sp. 2_1_16] Length = 308 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/156 (25%), Positives = 68/156 (43%), Gaps = 25/156 (16%) Query: 160 LYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPF 219 +Y+ GLRI E +L +I + T+ + ++I I+ + + ++ P Sbjct: 133 IYISLCTGLRIGEVCALKWSDINVSEGTITVNRTIERIYIINGMEKHTELVIN----TPK 188 Query: 220 DLNLNIQLPLFRGIRG--KPL------------------NPGVFQRYIRQLRRYLGLPLS 259 N ++P+ + + KPL P ++ Y +L LG+P Sbjct: 189 TQNSCREIPITKELLAMVKPLKKVVNEEFYVLTNDEYPTEPRTYRNYYGKLMAKLGIP-K 247 Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT 295 H LRHSFAT + G D +++ +LGH +STT Sbjct: 248 LKYHGLRHSFA