RPSBLAST alignment for GI: 254780882 and conserved domain: TIGR02224

>gnl|CDD|162771 TIGR02224, recomb_XerC, tyrosine recombinase XerC. The phage integrase family describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This model represents XerC, one of two closely related chromosomal proteins along with XerD (TIGR02225). XerC and XerD are site-specific recombinases which help resolve chromosome dimers to monomers for cell division after DNA replication. In species with a large chromosome and homologs of XerC on other replicons, the chomosomal copy was preferred for building this model. This model does not detect all XerC, as some apparent XerC examples score in the gray zone between trusted (450) and noise (410) cutoffs, along with some XerD examples. XerC and XerD interact with cell division protein FtsK. Length = 295
 Score =  282 bits (725), Expect = 6e-77
 Identities = 108/300 (36%), Positives = 169/300 (56%), Gaps = 12/300 (4%)

Query: 21  WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
           +L+ L +ER  S  T+++Y  D + FL FL    EE+  + ++ +++  ++R+F+++   
Sbjct: 3   FLEYLRVERNYSPHTVRAYRRDLKAFLEFL----EEEGGLASLAEVTAADLRSFLAELHA 58

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           + +  RSL R LS ++SF ++L +R +   +    +R  K+   LP+ L+E +   L+D 
Sbjct: 59  RGLSRRSLARKLSALRSFYRFLVRRGLIKANPAAGVRAPKQPKKLPKFLSEDEMEALLDA 118

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200
                     W+  R+ AIL LLY  GLR+SE + L   ++  D   +R++GKG+K RIV
Sbjct: 119 PDEDDE---DWLALRDRAILELLYSSGLRVSELVGLDLDDLDLDSGLVRVRGKGNKERIV 175

Query: 201 PLLPSVRKAILEYYDLCPFDLNLN-IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS 259
           P     + A+  Y +     L  +  Q  LF   RG  L P   Q  ++QL    GLP  
Sbjct: 176 PFGSYAKDALQAYLEARREKLLASEGQDALFLNRRGGRLTPRGVQYRLQQLVAKAGLPKH 235

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
              H LRHSFATHLL NG DLR++Q +LGH  LSTTQIYT+V+ ++    + ++YDQ HP
Sbjct: 236 VHPHALRHSFATHLLENGADLRAVQELLGHASLSTTQIYTHVDFQH----LAKVYDQAHP 291