RPSBLAST alignment for GI: 254780882 and conserved domain: cd00799
>gnl|CDD|29500 cd00799, INT_Cre, Cre recombinase, C-terminal catalytic domain. Cre-like recombinases belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The bacteriophage P1 Cre recombinase maintains the circular phage replicon in a monomeric state by catalyzing a site-specific recombination between two loxP sites. The catalytic core domain of Cre recombinase is linked to a more divergent helical N-terminal domain, which interacts primarily with the DNA major groove proximal to the crossover region.. Length = 287
Score = 58.4 bits (141), Expect = 2e-09
Identities = 56/289 (19%), Positives = 104/289 (35%), Gaps = 44/289 (15%)
Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTE--IRAFISKRRTQKIGDRSLKRSL 92
T ++Y D R+F A+ T L + + +++ + ++ R L
Sbjct: 3 TRKAYLSDWRRFA---AWCQAHGRT-----PLPASPETVTLYLTDL-ADSLAPSTISRRL 53
Query: 93 SGIKSFLKYLKKRKITTESNILN--MRNLKKSNSLPRALNEKQALTL----VDNVLLHTS 146
S + + +S ++ +R +++ + P+ +QAL + +D +
Sbjct: 54 SALSQLHRR-SGLPSPADSPLVRLVLRGIRREEARPK----RQALAILPEDLDKLRSLLD 108
Query: 147 HETKWIDARNSAILYLLYGCGLRISEALSLTPQNI-MDDQSTLRI---QGKGDK------ 196
D R+ A+L L + LR SE + L +++ D L + + K D+
Sbjct: 109 ESDTLRDLRDLALLLLGFAGLLRRSELVRLRWEDLTFTDGGGLLVTLRRSKTDQSGLGVL 168
Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP------LNPGVFQRYIRQL 250
I PL +A+ + + PLFR I L+ R +++L
Sbjct: 169 KLIPPLTTCPVRALERWLEAARIPKG-----PLFRRIDRWGVLGPGALSDNSLNRILKRL 223
Query: 251 RRYLGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIY 298
GL + + H+LR FAT G L I Y
Sbjct: 224 AEAAGLRSGSWSGHSLRRGFATEAARAGYSLLEIMRQGRWRSPKMVSRY 272