RPSBLAST alignment for GI: 254780882 and conserved domain: cd01185

>gnl|CDD|29506 cd01185, INT_Tn4399, Tn4399 and related integrases, DNA breaking-rejoining enzymes, integrase/recombinases, N- and C-terminal domains. This CD includes various bacterial integrases, including cLV25, a Bacteroides fragilis chromosomal transfer factor integrase similar to the Bacteroides mobilizable transposon, Tn4399, integrase.. Length = 299

 Score = 78.0 bits (192), Expect = 3e-15
 Identities = 60/285 (21%), Positives = 109/285 (38%), Gaps = 27/285 (9%)

Query: 24  NLEIERGLSKLTLQSYECDTRQFLIFLAF--YTEEKITIQTIRQLSYTEIRAF-ISKRRT 80
           N E ER        +++           F   T ++I I  + +L+   I  F +  R+ 
Sbjct: 23  NDERERVGKDKAQSTWKRYRTHLKNLREFIECTYKEIDI-ALLELTREFILEFKLFLRKE 81

Query: 81  QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140
           +K+   +    LS +K  LK   + K   ++     +  K+  +    L   +   L + 
Sbjct: 82  KKLSRNTAVHYLSWLKKLLKIAYRDKGLRDNPFAKFKCKKEEETDREYLTPDELQKLAET 141

Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR----IQGKGDK 196
                  E      R + +       GLR S+   LT + I++D    +     + K   
Sbjct: 142 PCKDPRLE----LVRRAFLFSCF--TGLRYSDIKKLTWEEIVEDSDGEKWIRKRRQKTKV 195

Query: 197 IRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL 256
              +PLL      IL  Y              +F  ++   +N     + +++  +  G+
Sbjct: 196 EVYIPLLD-EALQILGKYP--DEKEG-----LVFPLLKNSNMN-----KPLKEWAKLAGI 242

Query: 257 PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301
               T H  RH+FAT  L +GG + ++  +LGH  + TTQ+Y  V
Sbjct: 243 KKHITFHCARHTFATLQLLSGGPIETVSKMLGHTNIKTTQVYARV 287