RPSBLAST alignment for GI: 254780882 and conserved domain: cd01187
>gnl|CDD|29508 cd01187, INT_SG4, INT_SG4, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 4, N- and C-terminal domains. The CD contains mainly predicted bacterial integrase/recombinases for which not much biochemical characterization is available.. Length = 299
Score = 69.9 bits (171), Expect = 8e-13
Identities = 52/242 (21%), Positives = 86/242 (35%), Gaps = 17/242 (7%)
Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
+ + + + + L ++ F ++ ++ TE ++ + P
Sbjct: 46 ALRWAASPPSAQPATWA--GRLGVVRRFARHRRRADPRTEVPPADLFPRRPRRPTPYIYT 103
Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
+++ L+ L + LL GLR+ EAL L ++ D L +
Sbjct: 104 DEEIQRLLAAALQLPPTSGLR-PWTYRTLFGLLAVTGLRLGEALRLRLSDVDLDSGILTV 162
Query: 191 -QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG---VFQRY 246
K K R+VPL S R A+ +Y L F RG L+ G VF
Sbjct: 163 RDSKFGKSRLVPLHASTRAALRDYLARRDRLLPAPDSSAFFVSSRGGRLSYGGHRVFYAL 222
Query: 247 IRQLRRYLGLPLSTTA--HTLRHSFATHLLS----NGGD----LRSIQSILGHFRLSTTQ 296
R++ H LRH FA L+ G D L + + LGH ++ T
Sbjct: 223 SREIGLRGWAQRGRGPRLHDLRHRFAVTRLTRWYRAGADVERKLPVLATYLGHANITDTY 282
Query: 297 IY 298
Y
Sbjct: 283 WY 284