RPSBLAST alignment for GI: 254780882 and conserved domain: cd01187

>gnl|CDD|29508 cd01187, INT_SG4, INT_SG4, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 4, N- and C-terminal domains. The CD contains mainly predicted bacterial integrase/recombinases for which not much biochemical characterization is available.. Length = 299
 Score = 69.9 bits (171), Expect = 8e-13
 Identities = 52/242 (21%), Positives = 86/242 (35%), Gaps = 17/242 (7%)

Query: 71  IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
              + +   + +    +    L  ++ F ++ ++    TE    ++   +     P    
Sbjct: 46  ALRWAASPPSAQPATWA--GRLGVVRRFARHRRRADPRTEVPPADLFPRRPRRPTPYIYT 103

Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190
           +++   L+   L                +  LL   GLR+ EAL L   ++  D   L +
Sbjct: 104 DEEIQRLLAAALQLPPTSGLR-PWTYRTLFGLLAVTGLRLGEALRLRLSDVDLDSGILTV 162

Query: 191 -QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG---VFQRY 246
              K  K R+VPL  S R A+ +Y       L        F   RG  L+ G   VF   
Sbjct: 163 RDSKFGKSRLVPLHASTRAALRDYLARRDRLLPAPDSSAFFVSSRGGRLSYGGHRVFYAL 222

Query: 247 IRQLRRYLGLPLSTTA--HTLRHSFATHLLS----NGGD----LRSIQSILGHFRLSTTQ 296
            R++              H LRH FA   L+     G D    L  + + LGH  ++ T 
Sbjct: 223 SREIGLRGWAQRGRGPRLHDLRHRFAVTRLTRWYRAGADVERKLPVLATYLGHANITDTY 282

Query: 297 IY 298
            Y
Sbjct: 283 WY 284