RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780882|ref|YP_003065295.1| site-specific tyrosine
recombinase XerC [Candidatus Liberibacter asiaticus str. psy62]
(328 letters)
>1a0p_A Site-specific recombinase XERD; DNA binding, DNA
recombination; 2.50A {Escherichia coli} (A:101-290)
Length = 190
Score = 107 bits (268), Expect = 2e-24
Identities = 61/187 (32%), Positives = 92/187 (49%), Gaps = 7/187 (3%)
Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
K LP+ L+E Q L+ L+ ++ R+ A+L +LY GLR+SE + LT
Sbjct: 2 KLPQRLPKDLSEAQVERLLQAPLIDQ-----PLELRDKAMLEVLYATGLRVSELVGLTMS 56
Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKP 237
+I Q +R+ GKG+K R+VPL + Y + L + + +
Sbjct: 57 DISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQM 116
Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
+ R + H LRH+FATHLL++G DLR +Q +LGH LSTTQI
Sbjct: 117 TRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQI 176
Query: 298 YTNVNSK 304
YT+V ++
Sbjct: 177 YTHVATE 183
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA
complex; HET: PTR; 3.80A {Enterobacteria phage lambda}
(A:167-356)
Length = 190
Score = 95.5 bits (236), Expect = 9e-21
Identities = 29/199 (14%), Positives = 57/199 (28%), Gaps = 15/199 (7%)
Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
KS L + L + + + L G R+ + +
Sbjct: 5 AKSKVRRSRLTADEYLKIYQAA--------ESSPCWLRLAMELAVVTGQRVGDLCEMKWS 56
Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
+I+D + G K +P + + + + + R +PL+
Sbjct: 57 DIVDGYLYVEQSKTGVK-IAIPTALHIDALGISMKETLDKCKEILGGETIIASTRREPLS 115
Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLR--HSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
G RY + R+ GL T S + L + Q +LGH +
Sbjct: 116 SGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQ 175
Query: 298 YTNVNSKNGGDWMMEIYDQ 316
+ + +I +
Sbjct: 176 XRDDRGRE----WDKIEIK 190
>1ae9_A Lambda integrase; DNA recombination, site-specific
recombination; 1.90A {Bacteriophage lambda} (A:)
Length = 179
Score = 90.2 bits (222), Expect = 3e-19
Identities = 21/179 (11%), Positives = 42/179 (23%), Gaps = 9/179 (5%)
Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
L + L + + + L G R+ + + +I+D
Sbjct: 2 SRLTADEYLKIYQAA--------ESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYL 53
Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
+ G KI I L I L ++ +
Sbjct: 54 YVEQSKTGVKIAIPTALHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYF 113
Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
+ L S + L + Q +LGH + + + +
Sbjct: 114 MRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQFRDDRGR 172
>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA
complex; HET: PTR; 2.80A {Enterobacteria phage lambda}
PDB: 1p7d_A* (A:94-283)
Length = 190
Score = 88.6 bits (218), Expect = 1e-18
Identities = 30/186 (16%), Positives = 48/186 (25%), Gaps = 12/186 (6%)
Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179
KS L + L + + L G R+ +
Sbjct: 5 AKSKVRRSRLTADEYLKIYQAA--------ESSPCWLRLAXELAVVTGQRVGDLCEXKWS 56
Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239
+I+D + G KI I L I L L + + R +PL+
Sbjct: 57 DIVDGYLYVEQSKTGVKIAIPTALHIDALGISXKETLDKCKEILGGE-TIIASTRREPLS 115
Query: 240 PGVFQRYI--RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
G RY + L S + L + Q +LGH +
Sbjct: 116 SGTVSRYFXRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTXASQ 175
Query: 298 -YTNVN 302
+
Sbjct: 176 XRDDRG 181
>1xo0_A Recombinase CRE; CRE recombinase, holliday junction,
recombination,complex (recombinase/DNA), hydrolase,
ligase/DNA complex; 2.00A {Enterobacteria phage P1}
(A:115-310)
Length = 196
Score = 75.4 bits (183), Expect = 1e-14
Identities = 22/197 (11%), Positives = 46/197 (23%), Gaps = 26/197 (13%)
Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
A + + + D RN A L + Y L+I+E + ++I
Sbjct: 2 LAFERTDFDQVRS----LMENSDRCQDIRNLAFLGIAYNTLLKIAEIARIRVKDISRTDG 57
Query: 187 TLRIQGK-------GDKIRIVPLLPSVRKAILEYYDLCP---------------FDLNLN 224
+ L V K + + + +
Sbjct: 58 GRMLIHIGRTKTLVSTAGVEKALSLGVTKLVERWISVSGVADDPNNYLFCRVRKNGVAAP 117
Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
+ + + L+ + H+ R A + G + I
Sbjct: 118 SATSQLSTRALEGIFEATHRLIYGAKDDSGQRYLAWSGHSARVGAARDMARAGVSIPEIM 177
Query: 285 SILGHFRLSTTQIYTNV 301
G ++ Y
Sbjct: 178 QAGGWTNVNIVMNYIRN 194
>1xo0_A Recombinase CRE; CRE recombinase, holliday junction,
recombination,complex (recombinase/DNA), hydrolase,
ligase/DNA complex; 2.00A {Enterobacteria phage P1}
(A:1-114)
Length = 114
Score = 70.8 bits (173), Expect = 2e-13
Identities = 9/115 (7%), Positives = 38/115 (33%), Gaps = 7/115 (6%)
Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
+N + + S+ T + R + + ++R ++
Sbjct: 6 KNLMDMFRDRQAFSEHTWKMLLSVCRSWAAWCK---LNNR---KWFPAEPEDVRDYLLYL 59
Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
+ + + +++++ L + + + ++SN +++ + A +
Sbjct: 60 QARGLAVKTIQQHLGQLNMLHRRSGLPRP-SDSNAVSLVMRRIRKENVDAGERAK 113
>2a3v_A Site-specific recombinase INTI4; protein-DNA complex,
recombination; HET: DNA; 2.80A {Vibrio cholerae o1
biovar eltor str} (A:95-144,A:243-320)
Length = 128
Score = 68.3 bits (167), Expect = 1e-12
Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
+N V Q+ +R+ + G+ + T HTLRHSFATHLL G D+R++Q LGH + TTQI
Sbjct: 50 VNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQI 109
Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319
YT+V +
Sbjct: 110 YTHVLD----RGASGVLSPLSR 127
Score = 49.1 bits (117), Expect = 7e-07
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 11/57 (19%)
Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176
+ LP L + L++ +D ++ + LLYG GLR+ E + L
Sbjct: 3 QLERKLPVVLTRDEIRRLLEI-----------VDPKHQLPIKLLYGSGLRLMECMRL 48
>1a0p_A Site-specific recombinase XERD; DNA binding, DNA
recombination; 2.50A {Escherichia coli} (A:1-100)
Length = 100
Score = 65.7 bits (160), Expect = 8e-12
Identities = 20/99 (20%), Positives = 43/99 (43%), Gaps = 6/99 (6%)
Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
+ L + +L L +E+ L++ TL +Y D + +L + T+ +++
Sbjct: 1 QDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLH---HRGL---TLATAQSDDLQ 54
Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES 111
A +++R S R LS ++ +YL + K +
Sbjct: 55 ALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDD 93
>1aih_A HP1 integrase; DNA integration, recombination; 2.50A
{Bacteriophage HP1} (A:1-49,A:87-170)
Length = 133
Score = 63.4 bits (154), Expect = 4e-11
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 243 FQRYIRQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300
+ L H LRH+FA+H + NGG++ ++ ILGH + T Y +
Sbjct: 54 AYESFENAVLRAEIELPKGQLTHVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAH 113
Query: 301 VNSK 304
Sbjct: 114 FAPS 117
>2kd1_A DNA integration/recombination/invertion protein; protein
structure initiative, structural genomics, unknown
function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc
14579} (A:)
Length = 118
Score = 58.1 bits (140), Expect = 2e-09
Identities = 9/113 (7%), Positives = 41/113 (36%), Gaps = 9/113 (7%)
Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
++W + T + + +I + + +L+ ++ +++
Sbjct: 13 ESWFNTKR--HSVGIQTAKVLKGYLNSRIIPS-------LGNIKLAKLTSLHMQNYVNSL 63
Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131
R + + ++++ + I++ L++ ++ T++ + K +
Sbjct: 64 RDEGLKRGTIEKIIKVIRNSLEHAIDLELITKNVAAKTKLPKADKEELEHHHH 116
>2a3v_A Site-specific recombinase INTI4; protein-DNA complex,
recombination; HET: DNA; 2.80A {Vibrio cholerae o1
biovar eltor str} (A:1-94)
Length = 94
Score = 52.6 bits (126), Expect = 7e-08
Identities = 13/93 (13%), Positives = 38/93 (40%), Gaps = 10/93 (10%)
Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
+ + ++ R +K T+++Y +++ F + + E+ F++
Sbjct: 7 LSVREFMQ-TRYYAKKTIEAYLHWITRYIHFHN--------KKHPSLMGDKEVEEFLTYL 57
Query: 79 RTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTE 110
Q K+ ++ +L+ + K + K ++ E
Sbjct: 58 AVQGKVATKTQSLALNSLSFLYKEILKTPLSLE 90
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle,
structural genomics, PSI-2, protein structure
initiative; NMR {Moorella thermoacetica atcc 39073}
(A:27-117)
Length = 91
Score = 51.8 bits (124), Expect = 1e-07
Identities = 8/96 (8%), Positives = 31/96 (32%), Gaps = 7/96 (7%)
Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94
T +SYE R +I + +++L +I+ + + + ++
Sbjct: 3 TWESYETVLRLHVIPT-------LGSIPLKKLQPADIQRLYASKLESGLSPTRVRYIHVV 55
Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130
+ + ++ + ++ + + +
Sbjct: 56 LHEAMSQARESGLLLQNPTEAAKPPRHPLEHHHHHH 91
>2kiw_A INT protein; alpha, structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium; NMR {Staphylococcus haemolyticus JCSC1435}
(A:)
Length = 111
Score = 51.2 bits (122), Expect = 2e-07
Identities = 10/115 (8%), Positives = 35/115 (30%), Gaps = 11/115 (9%)
Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
+WL+ + ++++ E + + + I+ + + + F+
Sbjct: 7 DDWLKQYA--NDVKVSSVRAREKAIQHAIERFN--------TKPIQTIKKHDYQRFVDDI 56
Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133
+ + ++ KY ++ ++ KK S+ +
Sbjct: 57 S-AQYSKNYVDSIVASTNMIFKYAYDTRLIKAMPSEGIKRPKKKVSVELEHHHHH 110
>2kob_A Uncharacterized protein; alpha beta, structural genomics,
PSI-2, protein structure initiative; NMR {Clostridium
leptum dsm 753} (A:)
Length = 108
Score = 46.5 bits (110), Expect = 4e-06
Identities = 17/109 (15%), Positives = 43/109 (39%), Gaps = 12/109 (11%)
Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
+ +L++ E G+S L SY+ R L L ++++ ++ +I++ I++
Sbjct: 9 EKFLKSKE-ADGVSVSQLNSYKNYCRNHLSPLY--------MKSLSEILPADIQSIINET 59
Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
+ K +LK + + + + + +R K +
Sbjct: 60 KLAK---NTLKAIRNTASQIFRLAIENRAIDFNPADYVRIPKIALEHHH 105
>2kkv_A Integrase; protein structure, PSI, nesgc, structural
genomics, protein structure initiative, northeast
structural genomics consortium; NMR {Salmonella enterica
subsp} (A:)
Length = 121
Score = 46.1 bits (109), Expect = 7e-06
Identities = 12/115 (10%), Positives = 29/115 (25%), Gaps = 10/115 (8%)
Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
+ E + S+ ++ I IRQL + + A I +
Sbjct: 13 AREWHESNKRWSEDHRSRVLRYLELYI-------FPHIGSSDIRQLKTSHLLAPIKEVD- 64
Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALNEKQ 133
+R + + ++Y + + +M +
Sbjct: 65 TSGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGALSTTKARHYPLEHHHH 119
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA
complex; HET: PTR; 3.80A {Enterobacteria phage lambda}
(A:75-166)
Length = 92
Score = 44.9 bits (106), Expect = 1e-05
Identities = 14/92 (15%), Positives = 28/92 (30%), Gaps = 10/92 (10%)
Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
+ + L RG+ + TL +Y + L + ++ EI A ++
Sbjct: 7 DRYEKILA-SRGIKQKTLINYMSKIKAIRRGLP--------DAPLEDITTKEIAAMLNGY 57
Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE 110
+ S K S + + T
Sbjct: 58 I-DEGKAASAKLIRSTLSDAFREAIAEGHITT 88
>2key_A Putative phage integrase; protein structure, PSI, NESG,
structural genomics, unknown function, protein structure
initiative; NMR {Bacteroides fragilis nctc 9343} (A:)
Length = 112
Score = 44.9 bits (106), Expect = 1e-05
Identities = 14/104 (13%), Positives = 36/104 (34%), Gaps = 11/104 (10%)
Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
++++ R L T + ++ R+F + +L+ +R ++
Sbjct: 15 ASYMKTYS--RRLEIGTFRHHKSCMRKFKEYCE--------GLQFHELTEDFLRDYLIYM 64
Query: 79 RTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
+ D + +R+LS IK ++ K+ +
Sbjct: 65 KKTLCNADSTAQRNLSTIKIYVSAAIKKGYMENDPFKDFGLEHH 108
>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA
binding protein; 2.00A {Unidentified phage} (A:)
Length = 103
Score = 44.5 bits (105), Expect = 2e-05
Identities = 16/103 (15%), Positives = 33/103 (32%), Gaps = 10/103 (9%)
Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
+ + L RG+ + TL +Y + L + ++ EI A ++
Sbjct: 8 DRYEKILA-SRGIKQKTLINYMSKIKAIRRGLP--------DAPLEDITTKEIAAMLNGY 58
Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
+ S K S + + T +++ R K
Sbjct: 59 I-DEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKS 100
>2kj5_A Phage integrase; GFT NMR, PSI-2, NESG, structural genomics,
protein structure initiative; NMR {Nitrosospira
multiformis atcc 25196} (A:)
Length = 116
Score = 44.1 bits (104), Expect = 2e-05
Identities = 10/107 (9%), Positives = 21/107 (19%), Gaps = 8/107 (7%)
Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
+ E + + I + + I +
Sbjct: 13 ADEYFERMIAGRWKHPNIVRSRIEKDIK-------PAIGSLKVEDVKPRHIDDVLKAVM- 64
Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
++ +L +K Y KR I + L
Sbjct: 65 KRGAPSIANDTLRWLKRMFNYAIKRHIIEYNPAAAFDPGDAGGKLEH 111
>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium; NMR {Staphylococcus saprophyticus subsp}
(A:)
Length = 110
Score = 43.8 bits (103), Expect = 3e-05
Identities = 11/113 (9%), Positives = 37/113 (32%), Gaps = 12/113 (10%)
Query: 9 IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68
+++F + W + + +S+ T + YE + + ++ +
Sbjct: 1 MITFADYFYQ--WYEVNK-LPHVSESTKRHYESAYKHIKDHFR--------HKLLKDIKR 49
Query: 69 TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121
TE + F+++ ++++ S I++ ++
Sbjct: 50 TEYQKFLNEYG-LTHSYETIRKLNSYIRNAFDDAIHEGYVIKNPTYKAELHAS 101
>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA
complex; HET: PTR; 2.80A {Enterobacteria phage lambda}
PDB: 1p7d_A* (A:1-93)
Length = 93
Score = 42.5 bits (100), Expect = 7e-05
Identities = 14/92 (15%), Positives = 28/92 (30%), Gaps = 10/92 (10%)
Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78
+ + L RG+ + TL +Y + L + ++ EI A ++
Sbjct: 8 DRYEKILA-SRGIKQKTLINYXSKIKAIRRGLP--------DAPLEDITTKEIAAXLNGY 58
Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE 110
+ S K S + + T
Sbjct: 59 I-DEGKAASAKLIRSTLSDAFREAIAEGHITT 89
>2kj9_A Integrase; DNA_BRE_C superfamily, INTB, PSI-2, structural
genomics, protein structure initiative; NMR
{Pectobacterium atrosepticum} (A:)
Length = 118
Score = 41.8 bits (98), Expect = 1e-04
Identities = 11/107 (10%), Positives = 30/107 (28%), Gaps = 8/107 (7%)
Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
+ S+ +S +L I + I +L ++ I K
Sbjct: 17 AKSWFATKTTWSEDYQRSVWTRLETYLF-------PDIGNKDIAELDTGDLLVPIKKIE- 68
Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
+ R + ++Y ++K+ + ++ +
Sbjct: 69 KLGYLEIAMRVKQYATAIMRYAVQQKMIRFNPAYDLEGAVQKLEHHH 115
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA
integration, DNA recombination, structural genomics,
protein structure initiative; NMR {Escherichia coli
k-12} (A:)
Length = 118
Score = 40.0 bits (93), Expect = 4e-04
Identities = 7/107 (6%), Positives = 25/107 (23%), Gaps = 10/107 (9%)
Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80
W + ++ S ++ I I+ + ++ I +
Sbjct: 14 WYE--HKKQVWSVGYATELAKMFDDDIL-------PIIGGLEIQDIEPMQLLEVIRRFE- 63
Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127
+ ++ +Y + ++ + K
Sbjct: 64 DRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKN 110
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron,
iron-sulfur, iron-sulfur cluster, pyruvate catabolism,
TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio
africanus} (A:1-9,A:174-231,A:404-626)
Length = 290
Score = 28.9 bits (64), Expect = 1.0
Identities = 8/56 (14%), Positives = 23/56 (41%)
Query: 60 IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115
IQ I L Y ++ + ++++ + +S+ ++ + E+ + N
Sbjct: 15 IQKIEVLDYADMASLVNQKALAEFRAKSMNPEHPHVRGTAQNPDIYFQGREAAVDN 70
>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics,
PSI-2, protein structure initiative; 2.01A
{Desulfitobacterium hafniense dcb-2} (A:)
Length = 270
Score = 27.9 bits (62), Expect = 2.0
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222
D + + KG K+ +V P + + DL + +
Sbjct: 129 NDPFIXSQNEVKGKKVGVVGHFPHLESLLEPICDLSILEWS 169
>1rcw_A CT610, CADD; iron, DI-iron, redox enzyme, metallo enzyme,
oxidoreductase, toxin; 2.50A {Chlamydia trachomatis}
(A:)
Length = 231
Score = 27.0 bits (59), Expect = 3.5
Identities = 3/30 (10%), Positives = 9/30 (30%)
Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
++ + L Q Y + ++
Sbjct: 22 LEHTFYVKWSKGELTKEQLQAYAKDYYLHI 51
>1ohu_A Apoptosis regulator CED-9; BCL-2 family; 2.03A
{Caenorhabditis elegans} (A:)
Length = 175
Score = 26.8 bits (59), Expect = 4.2
Identities = 13/89 (14%), Positives = 23/89 (25%), Gaps = 14/89 (15%)
Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248
RI+ G + P LPS + E + + F+ +
Sbjct: 24 RIRQNGXEWFGAPGLPSGVQPEHEXXRVXGTIFEKK--------------HAENFETFSE 69
Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
QL + S +R +
Sbjct: 70 QLLAVPRISFSLYQDVVRTVGNAQTDQSP 98
>2fa1_A Probable transcriptional regulator PHNF; PNHF, APC5558,
effector binding domain, PSI, protein structure
initiative, MCSG; HET: BDF; 1.70A {Escherichia coli}
(A:)
Length = 160
Score = 26.6 bits (58), Expect = 4.7
Identities = 11/100 (11%), Positives = 24/100 (24%), Gaps = 17/100 (17%)
Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT----- 145
++ F + L + S L S + AL + ++ L
Sbjct: 2 HMNAQARFSQNLLDQGSHPTSEKLLSVLRPASGHVADALGITEGENVIHLRTLRRVNGVA 61
Query: 146 -SHETKWI-----------DARNSAILYLLYGCGLRISEA 173
+ S +L G+ + +
Sbjct: 62 LCLIDHYFADLTLWPTLQRFDSGSLHDFLREQTGIALRRS 101
>1rvx_A Hemagglutinin; viral protein; HET: SIA GAL NAG; 2.20A
{Influenza a virus} (A:92-265)
Length = 174
Score = 26.4 bits (58), Expect = 5.0
Identities = 20/104 (19%), Positives = 39/104 (37%), Gaps = 12/104 (11%)
Query: 17 ERQNWLQNLEIERGLSKLTL-QSYECDTRQFLIFLAFY-----TEEKITIQTIRQLSYTE 70
WL E+ S L SY + ++ L ++E+ + +
Sbjct: 58 RNLLWL----TEKEGSYPKLKNSYVNKKGKEVLVLWGIHHPPNSKEQQNLYQNENAYVSV 113
Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR--KITTESN 112
+ + ++R T +I +R R +G ++ L K I E+N
Sbjct: 114 VTSNYNRRFTPEIAERPKVRDQAGRMNYYWTLLKPGDTIIFEAN 157
>1otv_A Coenzyme PQQ synthesis protein C; seven helix bundle, dimer,
PQQ biosynthesis enzyme, biosynthetic protein; 2.10A
{Klebsiella pneumoniae} (A:)
Length = 259
Score = 26.3 bits (57), Expect = 5.5
Identities = 4/30 (13%), Positives = 7/30 (23%)
Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254
I P + Q ++ Y
Sbjct: 25 IHHPYHIAMHNGDATRKQIQGWVANRFYYQ 54
>3iac_A Glucuronate isomerase; IDP02065, structural genomics, center
for structural genomics of infectious diseases, csgid;
2.22A {Salmonella typhimurium} (A:28-49,A:143-237)
Length = 117
Score = 25.8 bits (57), Expect = 7.2
Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 19/107 (17%)
Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPL------LPSVRKAILEYYDLCPFDLNLNIQ-LP 228
L+PQ I DD+ +G + + + + S LEY+ D +++I+ P
Sbjct: 12 LSPQEIADDRRAFSARGIXQQXNVRXVGTTDDPIDS-----LEYHRQIAADDSIDIEVAP 66
Query: 229 LFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLST-----TAHTLRHSF 269
+R + K G F Y+R+L + ++ A T R
Sbjct: 67 SWRPDKVFKIELDG-FVDYLRKLEAAADVSITRFDDLRQALTRRLDH 112
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.320 0.136 0.391
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,348,841
Number of extensions: 101249
Number of successful extensions: 303
Number of sequences better than 10.0: 1
Number of HSP's gapped: 291
Number of HSP's successfully gapped: 41
Length of query: 328
Length of database: 4,956,049
Length adjustment: 89
Effective length of query: 239
Effective length of database: 1,947,404
Effective search space: 465429556
Effective search space used: 465429556
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.0 bits)