RPSBLAST alignment of GI: 254780882 and protein with PDBid: 1aih
>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Bacteriophage HP1} SCOP: d.163.1.1 Length = 170
Score = 45.5 bits (106), Expect = 2e-05
Identities = 36/163 (22%), Positives = 57/163 (34%), Gaps = 23/163 (14%)
Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
LL ++ D I+ + G R SEA + Q+ + K K R VP
Sbjct: 15 LLAECDNSRNPDLG--LIVRICLATGARWSEAET-LTQSQVMPYKITFTNTKSKKNRTVP 71
Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
+ + + + D LR + LP
Sbjct: 72 ISDELFDMLPKKRGRLFNDAY--------------------ESFENAVLRAEIELPKGQL 111
Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
H LRH+FA+H + NGG++ ++ ILGH + T Y +
Sbjct: 112 THVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAHFAPS 154