Query         gi|254780883|ref|YP_003065296.1| hypothetical protein CLIBASIA_03900 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 139
No_of_seqs    116 out of 1800
Neff          3.5 
Searched_HMMs 13730
Date          Wed Jun  1 10:46:04 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780883.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1bgva2 c.58.1.1 (A:1-194) Glu  22.3      17  0.0013   14.8   1.5   49   70-126    85-135 (194)
  2 d1xiya1 c.47.1.10 (A:2-180) 1-  11.3      32  0.0023   13.2   0.6   19   74-92     48-66  (179)
  3 d1gtma2 c.58.1.1 (A:3-180) Glu   7.6      59  0.0043   11.6   0.9   47   72-126    64-112 (178)
  4 d1b26a2 c.58.1.1 (A:4-178) Glu   7.2      58  0.0042   11.7   0.6   54   65-125    52-110 (175)
  5 d1shyb2 g.16.2.1 (B:516-564) H   5.9      73  0.0053   11.1   0.7   12   75-86      2-13  (49)
  6 d1r57a_ d.108.1.1 (A:) Hypothe   5.4      78  0.0057   10.9   1.4   39   53-99     51-89  (102)
  7 d1k8ia2 d.19.1.1 (A:11-92) Cla   5.2      43  0.0031   12.4  -1.0   11   17-27      4-14  (82)
  8 d1hdma2 d.19.1.1 (A:13-93) Cla   4.9      46  0.0033   12.3  -1.0   11   17-27      5-15  (81)
  9 d2j0141 d.325.1.2 (4:1-50) Rib   4.8      86  0.0062   10.7   1.0   10  109-118    37-46  (50)
 10 d4htci_ g.3.15.2 (I:) Hirudin    4.5      91  0.0066   10.5   1.0   11  115-125    52-62  (65)

No 1  
>d1bgva2 c.58.1.1 (A:1-194) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}
Probab=22.27  E-value=17  Score=14.79  Aligned_cols=49  Identities=18%  Similarity=0.278  Sum_probs=35.5

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC--CCCCCCCCCCC
Q ss_conf             0778788889867828999999995088899999998740688987--89868999888
Q gi|254780883|r   70 FSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLG--SDGFDPVPDDL  126 (139)
Q Consensus        70 iSP~lg~~CRf~PSCS~Ya~eAi~~~G~~kG~~Lt~~RLlRCnP~~--~gG~DPVP~~~  126 (139)
                      +-|..|. |||.|..+.=-..       ..+.+|+++=-+-+-|++  +||++-=|...
T Consensus        85 lGP~kGG-iR~~~~v~~~ev~-------~La~~MT~K~Al~~lp~GGgKggi~~dP~~~  135 (194)
T d1bgva2          85 IGPYKGG-LRFAPSVNLSIMK-------FLGFEQAFKDSLTTLPMGGAKGGSDFDPNGK  135 (194)
T ss_dssp             SSSEEEE-EEECTTCCHHHHH-------HHHHHHHHHHHHTSSSCCEEEEEESCCCTTC
T ss_pred             CCCCCCC-EEECCCCCHHHHH-------HHHHHHHHHHHHCCCCCCCCCCEECCCCCCC
T ss_conf             6876777-0466758999999-------9988888755432787456543123698899


No 2  
>d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=11.32  E-value=32  Score=13.23  Aligned_cols=19  Identities=21%  Similarity=0.294  Sum_probs=12.1

Q ss_pred             CCCCCCCCCCHHHHHHHHH
Q ss_conf             7888898678289999999
Q gi|254780883|r   74 FGNSCRYLPTCSEYGYEAI   92 (139)
Q Consensus        74 lg~~CRf~PSCS~Ya~eAi   92 (139)
                      ++--=-|.|+||+.-+-.+
T Consensus        48 ~~vPgAFTp~Cs~~hlp~y   66 (179)
T d1xiya1          48 ISLPGAFTPTCSTKMIPGY   66 (179)
T ss_dssp             EECSCTTCHHHHHTHHHHH
T ss_pred             EECCCCCCCCCCHHHCCCH
T ss_conf             9746666874221117523


No 3  
>d1gtma2 c.58.1.1 (A:3-180) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=7.63  E-value=59  Score=11.63  Aligned_cols=47  Identities=21%  Similarity=0.331  Sum_probs=31.9

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC--CCCCCCCCCCC
Q ss_conf             78788889867828999999995088899999998740688987--89868999888
Q gi|254780883|r   72 NVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLG--SDGFDPVPDDL  126 (139)
Q Consensus        72 P~lg~~CRf~PSCS~Ya~eAi~~~G~~kG~~Lt~~RLlRCnP~~--~gG~DPVP~~~  126 (139)
                      |.. .-|||.|..+.=-..|       .+.||+.+=-+-+=|++  +||++--|.+.
T Consensus        64 P~k-GGiR~~~~v~~~ev~a-------La~~MT~K~Al~~lp~GG~Kggi~~dP~~~  112 (178)
T d1gtma2          64 PTK-GGIRWHPEETLSTVKA-------LAAWMTWKTAVMDLPYGGGKGGIIVDPKKL  112 (178)
T ss_dssp             SEE-CCEEECTTCCHHHHHH-------HHHHHHHHHHHTTCSCEEEEEEEECCGGGS
T ss_pred             CCC-CCEEECCCCCHHHHHH-------HHHHHHHHHHHCCCCCCCCCEEEECCCCCC
T ss_conf             877-8847986588899999-------999998888741577788750572487788


No 4  
>d1b26a2 c.58.1.1 (A:4-178) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}
Probab=7.21  E-value=58  Score=11.68  Aligned_cols=54  Identities=22%  Similarity=0.374  Sum_probs=34.8

Q ss_pred             HHHHHCCCCCCC---CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC--CCCCCCCCCC
Q ss_conf             999850778788---889867828999999995088899999998740688987--8986899988
Q gi|254780883|r   65 IYQLIFSNVFGN---SCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLG--SDGFDPVPDD  125 (139)
Q Consensus        65 lYQ~~iSP~lg~---~CRf~PSCS~Ya~eAi~~~G~~kG~~Lt~~RLlRCnP~~--~gG~DPVP~~  125 (139)
                      -|+.--|-.+||   -|||.|..+.--..|+       +.||+.+=-+-+=|++  +||++-=|.+
T Consensus        52 gyR~qhn~~~GP~kGGiR~~~~v~~~ev~aL-------a~~MT~K~A~~~lP~GGgKggi~~dP~~  110 (175)
T d1b26a2          52 GYRVQHNVARGPAKGGIRYHPDVTLDEVKAL-------AFWMTWKTAVMNLPFGGGKGGVRVDPKK  110 (175)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCHHHHHHH-------HHHHHHHHHHHTCSCEEEEEEEECCGGG
T ss_pred             EEEEEEECCCCCCCCCEEECCCCCHHHHHHH-------HHHHHHHHHHHCCCCCCCCCEEECCCCC
T ss_conf             3899860423434687147620258999999-------8898887885077645654225348778


No 5  
>d1shyb2 g.16.2.1 (B:516-564) Hepatocyte growth factor receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.90  E-value=73  Score=11.09  Aligned_cols=12  Identities=42%  Similarity=1.018  Sum_probs=8.4

Q ss_pred             CCCCCCCCCHHH
Q ss_conf             888898678289
Q gi|254780883|r   75 GNSCRYLPTCSE   86 (139)
Q Consensus        75 g~~CRf~PSCS~   86 (139)
                      |+.|..|.||++
T Consensus         2 gp~C~~~~sC~~   13 (49)
T d1shyb2           2 GLGCRHFQSCSQ   13 (49)
T ss_dssp             GGGGTTCCSHHH
T ss_pred             CCCCCCCCCHHH
T ss_conf             787478688889


No 6  
>d1r57a_ d.108.1.1 (A:) Hypothetical protein SA2309 {Staphylococcus aureus [TaxId: 1280]}
Probab=5.40  E-value=78  Score=10.91  Aligned_cols=39  Identities=8%  Similarity=0.247  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCHHH
Q ss_conf             48999999999999985077878888986782899999999508889
Q gi|254780883|r   53 TLGRLIGIGIIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWI   99 (139)
Q Consensus        53 ~l~r~i~i~LI~lYQ~~iSP~lg~~CRf~PSCS~Ya~eAi~~~G~~k   99 (139)
                      -+++.+.-.++..=+.-       .=+-.|+|| |+..-+++|--+.
T Consensus        51 Gig~~Lv~~~l~~Ar~~-------g~kvvp~c~-y~~~~~~k~pey~   89 (102)
T d1r57a_          51 GVGKKLLKAVVEHAREN-------NLKIIASCS-FAKHMLEKEDSYQ   89 (102)
T ss_dssp             CTHHHHHHHHHHHHHHH-------TCEEEESSH-HHHHHHHHCGGGT
T ss_pred             CHHHHHHHHHHHHHHHC-------CCEEEEECH-HHHHHHHHCCCHH
T ss_conf             48999999999999888-------989999667-5899988690499


No 7  
>d1k8ia2 d.19.1.1 (A:11-92) Class II MHC alpha chain, N-terminal domain {Mouse (Mus musculus), H2-DM [TaxId: 10090]}
Probab=5.16  E-value=43  Score=12.44  Aligned_cols=11  Identities=18%  Similarity=0.265  Sum_probs=8.2

Q ss_pred             HHHCCHHHCCH
Q ss_conf             75301010101
Q gi|254780883|r   17 TFSQSSYALPI   27 (139)
Q Consensus        17 ~~~~~~~~~~~   27 (139)
                      ||+++.||||.
T Consensus         4 Tf~htlfCQ~~   14 (82)
T d1k8ia2           4 TFRHTLFCQDG   14 (82)
T ss_dssp             EEEEEEEEESS
T ss_pred             CCEEEEEECCC
T ss_conf             22167870599


No 8  
>d1hdma2 d.19.1.1 (A:13-93) Class II MHC alpha chain, N-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}
Probab=4.93  E-value=46  Score=12.30  Aligned_cols=11  Identities=27%  Similarity=0.323  Sum_probs=8.2

Q ss_pred             HHHCCHHHCCH
Q ss_conf             75301010101
Q gi|254780883|r   17 TFSQSSYALPI   27 (139)
Q Consensus        17 ~~~~~~~~~~~   27 (139)
                      ||+++.||||.
T Consensus         5 Tf~htlfCQ~~   15 (81)
T d1hdma2           5 TFLHTVYCQDG   15 (81)
T ss_dssp             EEEEEEEEESS
T ss_pred             CCEEEEEECCC
T ss_conf             10147870599


No 9  
>d2j0141 d.325.1.2 (4:1-50) Ribosomal protein L31p {Thermus thermophilus [TaxId: 274]}
Probab=4.83  E-value=86  Score=10.68  Aligned_cols=10  Identities=30%  Similarity=0.677  Sum_probs=5.7

Q ss_pred             CCCCCCCCCC
Q ss_conf             0688987898
Q gi|254780883|r  109 IKCNPLGSDG  118 (139)
Q Consensus       109 lRCnP~~~gG  118 (139)
                      ..||||..|.
T Consensus        37 s~cHPFyTG~   46 (50)
T d2j0141          37 SKCHPFYTGQ   46 (50)
T ss_dssp             CCCCSSSCCC
T ss_pred             CCCCCCCCCE
T ss_conf             9997869780


No 10 
>d4htci_ g.3.15.2 (I:) Hirudin {Leech (Hirudo medicinalis) [TaxId: 6421]}
Probab=4.49  E-value=91  Score=10.53  Aligned_cols=11  Identities=18%  Similarity=0.812  Sum_probs=0.0

Q ss_pred             CCCCCCCCCCC
Q ss_conf             78986899988
Q gi|254780883|r  115 GSDGFDPVPDD  125 (139)
Q Consensus       115 ~~gG~DPVP~~  125 (139)
                      ..|.++|+||+
T Consensus        52 ~~gDFeeIPee   62 (65)
T d4htci_          52 NNGDFEEIPEE   62 (65)
T ss_dssp             CCCCCCCCCGG
T ss_pred             CCCCCCCCCHH
T ss_conf             88775528577


Done!