Query gi|254780883|ref|YP_003065296.1| hypothetical protein CLIBASIA_03900 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 139 No_of_seqs 116 out of 1800 Neff 3.5 Searched_HMMs 13730 Date Wed Jun 1 10:46:04 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780883.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1bgva2 c.58.1.1 (A:1-194) Glu 22.3 17 0.0013 14.8 1.5 49 70-126 85-135 (194) 2 d1xiya1 c.47.1.10 (A:2-180) 1- 11.3 32 0.0023 13.2 0.6 19 74-92 48-66 (179) 3 d1gtma2 c.58.1.1 (A:3-180) Glu 7.6 59 0.0043 11.6 0.9 47 72-126 64-112 (178) 4 d1b26a2 c.58.1.1 (A:4-178) Glu 7.2 58 0.0042 11.7 0.6 54 65-125 52-110 (175) 5 d1shyb2 g.16.2.1 (B:516-564) H 5.9 73 0.0053 11.1 0.7 12 75-86 2-13 (49) 6 d1r57a_ d.108.1.1 (A:) Hypothe 5.4 78 0.0057 10.9 1.4 39 53-99 51-89 (102) 7 d1k8ia2 d.19.1.1 (A:11-92) Cla 5.2 43 0.0031 12.4 -1.0 11 17-27 4-14 (82) 8 d1hdma2 d.19.1.1 (A:13-93) Cla 4.9 46 0.0033 12.3 -1.0 11 17-27 5-15 (81) 9 d2j0141 d.325.1.2 (4:1-50) Rib 4.8 86 0.0062 10.7 1.0 10 109-118 37-46 (50) 10 d4htci_ g.3.15.2 (I:) Hirudin 4.5 91 0.0066 10.5 1.0 11 115-125 52-62 (65) No 1 >d1bgva2 c.58.1.1 (A:1-194) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} Probab=22.27 E-value=17 Score=14.79 Aligned_cols=49 Identities=18% Similarity=0.278 Sum_probs=35.5 Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC--CCCCCCCCCCC Q ss_conf 0778788889867828999999995088899999998740688987--89868999888 Q gi|254780883|r 70 FSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLG--SDGFDPVPDDL 126 (139) Q Consensus 70 iSP~lg~~CRf~PSCS~Ya~eAi~~~G~~kG~~Lt~~RLlRCnP~~--~gG~DPVP~~~ 126 (139) +-|..|. |||.|..+.=-.. ..+.+|+++=-+-+-|++ +||++-=|... T Consensus 85 lGP~kGG-iR~~~~v~~~ev~-------~La~~MT~K~Al~~lp~GGgKggi~~dP~~~ 135 (194) T d1bgva2 85 IGPYKGG-LRFAPSVNLSIMK-------FLGFEQAFKDSLTTLPMGGAKGGSDFDPNGK 135 (194) T ss_dssp SSSEEEE-EEECTTCCHHHHH-------HHHHHHHHHHHHTSSSCCEEEEEESCCCTTC T ss_pred CCCCCCC-EEECCCCCHHHHH-------HHHHHHHHHHHHCCCCCCCCCCEECCCCCCC T ss_conf 6876777-0466758999999-------9988888755432787456543123698899 No 2 >d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Probab=11.32 E-value=32 Score=13.23 Aligned_cols=19 Identities=21% Similarity=0.294 Sum_probs=12.1 Q ss_pred CCCCCCCCCCHHHHHHHHH Q ss_conf 7888898678289999999 Q gi|254780883|r 74 FGNSCRYLPTCSEYGYEAI 92 (139) Q Consensus 74 lg~~CRf~PSCS~Ya~eAi 92 (139) ++--=-|.|+||+.-+-.+ T Consensus 48 ~~vPgAFTp~Cs~~hlp~y 66 (179) T d1xiya1 48 ISLPGAFTPTCSTKMIPGY 66 (179) T ss_dssp EECSCTTCHHHHHTHHHHH T ss_pred EECCCCCCCCCCHHHCCCH T ss_conf 9746666874221117523 No 3 >d1gtma2 c.58.1.1 (A:3-180) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Probab=7.63 E-value=59 Score=11.63 Aligned_cols=47 Identities=21% Similarity=0.331 Sum_probs=31.9 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC--CCCCCCCCCCC Q ss_conf 78788889867828999999995088899999998740688987--89868999888 Q gi|254780883|r 72 NVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLG--SDGFDPVPDDL 126 (139) Q Consensus 72 P~lg~~CRf~PSCS~Ya~eAi~~~G~~kG~~Lt~~RLlRCnP~~--~gG~DPVP~~~ 126 (139) |.. .-|||.|..+.=-..| .+.||+.+=-+-+=|++ +||++--|.+. T Consensus 64 P~k-GGiR~~~~v~~~ev~a-------La~~MT~K~Al~~lp~GG~Kggi~~dP~~~ 112 (178) T d1gtma2 64 PTK-GGIRWHPEETLSTVKA-------LAAWMTWKTAVMDLPYGGGKGGIIVDPKKL 112 (178) T ss_dssp SEE-CCEEECTTCCHHHHHH-------HHHHHHHHHHHTTCSCEEEEEEEECCGGGS T ss_pred CCC-CCEEECCCCCHHHHHH-------HHHHHHHHHHHCCCCCCCCCEEEECCCCCC T ss_conf 877-8847986588899999-------999998888741577788750572487788 No 4 >d1b26a2 c.58.1.1 (A:4-178) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Probab=7.21 E-value=58 Score=11.68 Aligned_cols=54 Identities=22% Similarity=0.374 Sum_probs=34.8 Q ss_pred HHHHHCCCCCCC---CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC--CCCCCCCCCC Q ss_conf 999850778788---889867828999999995088899999998740688987--8986899988 Q gi|254780883|r 65 IYQLIFSNVFGN---SCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLG--SDGFDPVPDD 125 (139) Q Consensus 65 lYQ~~iSP~lg~---~CRf~PSCS~Ya~eAi~~~G~~kG~~Lt~~RLlRCnP~~--~gG~DPVP~~ 125 (139) -|+.--|-.+|| -|||.|..+.--..|+ +.||+.+=-+-+=|++ +||++-=|.+ T Consensus 52 gyR~qhn~~~GP~kGGiR~~~~v~~~ev~aL-------a~~MT~K~A~~~lP~GGgKggi~~dP~~ 110 (175) T d1b26a2 52 GYRVQHNVARGPAKGGIRYHPDVTLDEVKAL-------AFWMTWKTAVMNLPFGGGKGGVRVDPKK 110 (175) T ss_dssp EEEEEEECTTSSEEEEEEECSSCCHHHHHHH-------HHHHHHHHHHHTCSCEEEEEEEECCGGG T ss_pred EEEEEEECCCCCCCCCEEECCCCCHHHHHHH-------HHHHHHHHHHHCCCCCCCCCEEECCCCC T ss_conf 3899860423434687147620258999999-------8898887885077645654225348778 No 5 >d1shyb2 g.16.2.1 (B:516-564) Hepatocyte growth factor receptor {Human (Homo sapiens) [TaxId: 9606]} Probab=5.90 E-value=73 Score=11.09 Aligned_cols=12 Identities=42% Similarity=1.018 Sum_probs=8.4 Q ss_pred CCCCCCCCCHHH Q ss_conf 888898678289 Q gi|254780883|r 75 GNSCRYLPTCSE 86 (139) Q Consensus 75 g~~CRf~PSCS~ 86 (139) |+.|..|.||++ T Consensus 2 gp~C~~~~sC~~ 13 (49) T d1shyb2 2 GLGCRHFQSCSQ 13 (49) T ss_dssp GGGGTTCCSHHH T ss_pred CCCCCCCCCHHH T ss_conf 787478688889 No 6 >d1r57a_ d.108.1.1 (A:) Hypothetical protein SA2309 {Staphylococcus aureus [TaxId: 1280]} Probab=5.40 E-value=78 Score=10.91 Aligned_cols=39 Identities=8% Similarity=0.247 Sum_probs=21.4 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCHHH Q ss_conf 48999999999999985077878888986782899999999508889 Q gi|254780883|r 53 TLGRLIGIGIIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWI 99 (139) Q Consensus 53 ~l~r~i~i~LI~lYQ~~iSP~lg~~CRf~PSCS~Ya~eAi~~~G~~k 99 (139) -+++.+.-.++..=+.- .=+-.|+|| |+..-+++|--+. T Consensus 51 Gig~~Lv~~~l~~Ar~~-------g~kvvp~c~-y~~~~~~k~pey~ 89 (102) T d1r57a_ 51 GVGKKLLKAVVEHAREN-------NLKIIASCS-FAKHMLEKEDSYQ 89 (102) T ss_dssp CTHHHHHHHHHHHHHHH-------TCEEEESSH-HHHHHHHHCGGGT T ss_pred CHHHHHHHHHHHHHHHC-------CCEEEEECH-HHHHHHHHCCCHH T ss_conf 48999999999999888-------989999667-5899988690499 No 7 >d1k8ia2 d.19.1.1 (A:11-92) Class II MHC alpha chain, N-terminal domain {Mouse (Mus musculus), H2-DM [TaxId: 10090]} Probab=5.16 E-value=43 Score=12.44 Aligned_cols=11 Identities=18% Similarity=0.265 Sum_probs=8.2 Q ss_pred HHHCCHHHCCH Q ss_conf 75301010101 Q gi|254780883|r 17 TFSQSSYALPI 27 (139) Q Consensus 17 ~~~~~~~~~~~ 27 (139) ||+++.||||. T Consensus 4 Tf~htlfCQ~~ 14 (82) T d1k8ia2 4 TFRHTLFCQDG 14 (82) T ss_dssp EEEEEEEEESS T ss_pred CCEEEEEECCC T ss_conf 22167870599 No 8 >d1hdma2 d.19.1.1 (A:13-93) Class II MHC alpha chain, N-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]} Probab=4.93 E-value=46 Score=12.30 Aligned_cols=11 Identities=27% Similarity=0.323 Sum_probs=8.2 Q ss_pred HHHCCHHHCCH Q ss_conf 75301010101 Q gi|254780883|r 17 TFSQSSYALPI 27 (139) Q Consensus 17 ~~~~~~~~~~~ 27 (139) ||+++.||||. T Consensus 5 Tf~htlfCQ~~ 15 (81) T d1hdma2 5 TFLHTVYCQDG 15 (81) T ss_dssp EEEEEEEEESS T ss_pred CCEEEEEECCC T ss_conf 10147870599 No 9 >d2j0141 d.325.1.2 (4:1-50) Ribosomal protein L31p {Thermus thermophilus [TaxId: 274]} Probab=4.83 E-value=86 Score=10.68 Aligned_cols=10 Identities=30% Similarity=0.677 Sum_probs=5.7 Q ss_pred CCCCCCCCCC Q ss_conf 0688987898 Q gi|254780883|r 109 IKCNPLGSDG 118 (139) Q Consensus 109 lRCnP~~~gG 118 (139) ..||||..|. T Consensus 37 s~cHPFyTG~ 46 (50) T d2j0141 37 SKCHPFYTGQ 46 (50) T ss_dssp CCCCSSSCCC T ss_pred CCCCCCCCCE T ss_conf 9997869780 No 10 >d4htci_ g.3.15.2 (I:) Hirudin {Leech (Hirudo medicinalis) [TaxId: 6421]} Probab=4.49 E-value=91 Score=10.53 Aligned_cols=11 Identities=18% Similarity=0.812 Sum_probs=0.0 Q ss_pred CCCCCCCCCCC Q ss_conf 78986899988 Q gi|254780883|r 115 GSDGFDPVPDD 125 (139) Q Consensus 115 ~~gG~DPVP~~ 125 (139) ..|.++|+||+ T Consensus 52 ~~gDFeeIPee 62 (65) T d4htci_ 52 NNGDFEEIPEE 62 (65) T ss_dssp CCCCCCCCCGG T ss_pred CCCCCCCCCHH T ss_conf 88775528577 Done!