RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780883|ref|YP_003065296.1| hypothetical protein
CLIBASIA_03900 [Candidatus Liberibacter asiaticus str. psy62]
(139 letters)
>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 242
Score = 26.6 bits (58), Expect = 0.93
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 6/30 (20%)
Query: 12 DRYLTTFS------QSSYALPIQKKGSPLL 35
DR ++TFS Q Y+L K GS +
Sbjct: 1 DRGVSTFSPEGRLFQVEYSLEAIKLGSTAI 30
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 26.1 bits (57), Expect = 1.1
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 6/32 (18%)
Query: 10 SSDRYLTTFS------QSSYALPIQKKGSPLL 35
S DR +T FS Q YA KKGS +
Sbjct: 1 SYDRAITVFSPDGHLFQVEYAQEAVKKGSTAV 32
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 25.8 bits (56), Expect = 1.3
Identities = 9/34 (26%), Positives = 10/34 (29%), Gaps = 6/34 (17%)
Query: 8 STSSDRYLTTFS------QSSYALPIQKKGSPLL 35
S D T FS Q YA+ L
Sbjct: 1 SRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCL 34
>d2hava1 c.94.1.2 (A:340-664) Transferrin {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 325
Score = 25.4 bits (55), Expect = 1.7
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 9 TSSDRYLTTFSQSSYALPIQKKGSPLLLKNNTPKSRNWNGKFPKTLGRLIGIGII--RIY 66
SD T +A+ + KK + L +N ++ + +T G I +G++ +I
Sbjct: 74 NKSDNCEDTPEAGYFAVAVVKKSASDLTWDNLKGKKSCHTAVGRTAGWNIPMGLLYNKIN 133
Query: 67 QLIFSNVFGNSC 78
F F C
Sbjct: 134 HCRFDEFFSEGC 145
>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 244
Score = 25.3 bits (55), Expect = 2.0
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 6/32 (18%)
Query: 8 STSSDRYLTTFS------QSSYALPIQKKGSP 33
S DR++T FS Q YA +G
Sbjct: 5 SAGFDRHITIFSPEGRLYQVEYAFKAINQGGL 36
>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 238
Score = 25.0 bits (54), Expect = 2.7
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 6/30 (20%)
Query: 12 DRYLTTFS------QSSYALPIQKKGSPLL 35
D +T +S Q YA+ K+GS +
Sbjct: 4 DNDVTVWSPQGRIHQIEYAMEAVKQGSATV 33
>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 244
Score = 24.7 bits (53), Expect = 3.1
Identities = 9/34 (26%), Positives = 10/34 (29%), Gaps = 6/34 (17%)
Query: 8 STSSDRYLTTFS------QSSYALPIQKKGSPLL 35
S D T FS Q YAL +
Sbjct: 2 SRRYDSRTTIFSPEGRLYQVEYALESISHAGTAI 35
>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 233
Score = 24.3 bits (52), Expect = 4.4
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 6/30 (20%)
Query: 12 DRYLTTFS------QSSYALPIQKKGSPLL 35
D TFS Q YAL K+GS +
Sbjct: 6 DGDTVTFSPTGRLFQVEYALEAIKQGSVTV 35
>d1eb7a1 a.3.1.5 (A:1-164) Di-heme cytochrome c peroxidase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 164
Score = 24.0 bits (51), Expect = 4.5
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 119 FDPVPDDLPPKKNNP 133
F P+P+ + + P
Sbjct: 11 FKPIPEQVTELRGQP 25
>d2veaa2 d.110.2.4 (A:327-514) Phytochrome-like protein Cph1
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 188
Score = 24.1 bits (52), Expect = 4.5
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 24 ALPIQKKGSPLLLKNNTPKSRNWNGKFPK 52
A+PI + L + ++ NW G
Sbjct: 102 AIPIARHNFLLWFRPEVLQTVNWGGDPNH 130
>d1whia_ b.39.1.1 (A:) Ribosomal protein L14 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 122
Score = 24.0 bits (52), Expect = 5.8
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 110 KCNPLGSDGFDPVPDDLPPKKNNPKLLS 137
+P G+ F PV +L K+ K++S
Sbjct: 90 DKSPRGTRIFGPVAREL-RDKDFMKIIS 116
>d2j01o1 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus
thermophilus [TaxId: 274]}
Length = 122
Score = 23.5 bits (51), Expect = 6.3
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 110 KCNPLGSDGFDPVPDDLPPKKNNPKLLS 137
+ P G+ F PV +L +K K++S
Sbjct: 90 QLEPRGTRVFGPVAREL-REKGFMKIVS 116
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 23.6 bits (50), Expect = 6.6
Identities = 9/73 (12%), Positives = 21/73 (28%), Gaps = 7/73 (9%)
Query: 26 PIQKKGSPLLLKNNTPKSRNWNGKFPKTLGRLIGIGIIRIYQLIFSNVFGNSCRYLP--T 83
IQ++ ++K R+ + G+ I + L + P
Sbjct: 42 AIQQRAIKQIIKG-----RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRE 96
Query: 84 CSEYGYEAIARYG 96
+ + + G
Sbjct: 97 LAVQIQKGLLALG 109
>d1s58a_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid
protein {Human parvovirus B19 [TaxId: 10798]}
Length = 536
Score = 23.3 bits (50), Expect = 8.3
Identities = 10/69 (14%), Positives = 21/69 (30%)
Query: 7 DSTSSDRYLTTFSQSSYALPIQKKGSPLLLKNNTPKSRNWNGKFPKTLGRLIGIGIIRIY 66
+T S +T + +P + + N +GK K +G +
Sbjct: 10 GATFSANSVTCTFSRQFLIPYDPEHHYKVFSPAASSCHNASGKEAKVCTITPIMGYSTPW 69
Query: 67 QLIFSNVFG 75
+ + N
Sbjct: 70 RYLDFNALN 78
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.140 0.443
Gapped
Lambda K H
0.267 0.0600 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 571,566
Number of extensions: 26482
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 16
Length of query: 139
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 62
Effective length of database: 1,350,386
Effective search space: 83723932
Effective search space used: 83723932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.5 bits)