HHsearch alignment for GI: 254780885 and conserved domain: COG5581
>COG5581 c-di-GMP-binding protein [Signal transduction mechanisms].
Probab=95.60 E-value=0.2 Score=29.06 Aligned_cols=171 Identities=19% Similarity=0.196 Sum_probs=91.8
Q ss_pred EEECCCCC-EEEEEEEECCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEEECCHHHHHHHHHHHHH
Q ss_conf 99468983-02699987568549994278876797499999554437699999308983899997698789999999998
Q gi|254780885|r 27 FLLFDGTE-YNCIVREISPGGLCIVCDVPMFLVGERSIVFVEKVGRIEGKVVNFDSNRGYAVRIVTSENERRKLADKLIW 105 (207)
Q Consensus 27 ~ll~d~~E-~~C~t~diSpgg~~l~~~~~~~~~Gervv~Yld~iGrlEG~V~r~~~~~GFav~l~~t~~kR~kLA~qLtW 105 (207)
T Consensus 24 ~~~~~~~~q~~S~ivdI~~e~~~ia~d~~~-~~~~~~~l~~g~--~~ti~~--~~~~a~y~Fts~~l~~~~e~~~lp~f~ 98 (233)
T COG5581 24 VRLENAGGQYKSKIVDIDPEEGVIALDFGS-QNGRNVILLKGT--QFTIEA--EHKGAKYEFTSEVLEQVKEYLQLPAFS 98 (233)
T ss_pred EEECCCCCEEEEEEEEECCCCCEEEEECCC-CCCCEEEECCCC--EEEEEE--ECCCCEEEEEEEEHCCCCCCCCCEEEC
T ss_conf 775234631454456205666679863266-568566512895--599999--548957999983110023511540672
Q ss_pred HHCCCCCCCCHHCCCCC----CCCCCCCCEEEEEECCCCEEEEEEEEEECCCEEEECCCC--CCCCCEEEE-------C-
Q ss_conf 76424367502102567----477776513689957998898999987424204551577--899855897-------3-
Q gi|254780885|r 106 LANKDDLHLQDCRAYGR----KITRDREVDAQLVLNDNTKHSCKVIDISESGVSVSVDLQ--IEMFSKVLF-------N- 171 (207)
Q Consensus 106 lanr~~l~l~e~R~h~R----~vPr~~~~~~~l~l~DG~~~~criiDiS~SGAAi~~~~r--p~iGs~V~v-------G- 171 (207)
T Consensus 99 ~p~pe~lkriQRR~~fRvsa~l~~~y~---~~~~~~d~~~lr~~~~DiS~GGm~~vl~~gl~~~l~e~~~~~~~~~~~~~ 175 (233)
T COG5581 99 TPPPETLKRIQRRRYFRVSAPLSPPYY---VQNKLTDEEPLRFTLYDISAGGMGLVLEGGLSFRLHEGIRYVDALVDEGQ 175 (233)
T ss_pred CCCHHHHHHHHHHHHEEECCCCCCCEE---ECCCCCCCCCCEEEEEEECCCCHHEEECCCCCCCCCCCCEEEEEECCCCC
T ss_conf 599799889887664563420146455---32566765651237886047632011077767576787378764010565
Q ss_pred -----CEEEEEEEEE------CCEEEEEECCCCCCCHHHHHHHHHCC
Q ss_conf -----4669999993------89089997167784236778753039
Q gi|254780885|r 172 -----DILGRVVRIF------PGGIAIEFSSVQESNIAFKSLINHCY 207 (207)
Q Consensus 172 -----~~~grVVRh~------~~GfaVeF~~~q~~~~~~~~~~~~~~ 207 (207)
T Consensus 176 d~~li~~~~~vv~~~k~e~~~~~r~~leFl~--is~~~er~l~r~~F 220 (233)
T COG5581 176 DQQLISISARVVRIRKDEKLGERRLGLEFLE--ISPRIERKLIRFVF 220 (233)
T ss_pred CCCEEEEEEEEEEECCCCCCCCEEEEEEEEC--CCHHHHHHHHHHHH
T ss_conf 4000450038998537753363466678703--89889999999999