HHsearch alignment for GI: 254780885 and conserved domain: COG5581

>COG5581 c-di-GMP-binding protein [Signal transduction mechanisms].
Probab=95.60  E-value=0.2  Score=29.06  Aligned_cols=171  Identities=19%  Similarity=0.196  Sum_probs=91.8

Q ss_pred             EEECCCCC-EEEEEEEECCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEEECCHHHHHHHHHHHHH
Q ss_conf             99468983-02699987568549994278876797499999554437699999308983899997698789999999998
Q gi|254780885|r   27 FLLFDGTE-YNCIVREISPGGLCIVCDVPMFLVGERSIVFVEKVGRIEGKVVNFDSNRGYAVRIVTSENERRKLADKLIW  105 (207)
Q Consensus        27 ~ll~d~~E-~~C~t~diSpgg~~l~~~~~~~~~Gervv~Yld~iGrlEG~V~r~~~~~GFav~l~~t~~kR~kLA~qLtW  105 (207)
T Consensus        24 ~~~~~~~~q~~S~ivdI~~e~~~ia~d~~~-~~~~~~~l~~g~--~~ti~~--~~~~a~y~Fts~~l~~~~e~~~lp~f~   98 (233)
T COG5581          24 VRLENAGGQYKSKIVDIDPEEGVIALDFGS-QNGRNVILLKGT--QFTIEA--EHKGAKYEFTSEVLEQVKEYLQLPAFS   98 (233)
T ss_pred             EEECCCCCEEEEEEEEECCCCCEEEEECCC-CCCCEEEECCCC--EEEEEE--ECCCCEEEEEEEEHCCCCCCCCCEEEC
T ss_conf             775234631454456205666679863266-568566512895--599999--548957999983110023511540672


Q ss_pred             HHCCCCCCCCHHCCCCC----CCCCCCCCEEEEEECCCCEEEEEEEEEECCCEEEECCCC--CCCCCEEEE-------C-
Q ss_conf             76424367502102567----477776513689957998898999987424204551577--899855897-------3-
Q gi|254780885|r  106 LANKDDLHLQDCRAYGR----KITRDREVDAQLVLNDNTKHSCKVIDISESGVSVSVDLQ--IEMFSKVLF-------N-  171 (207)
Q Consensus       106 lanr~~l~l~e~R~h~R----~vPr~~~~~~~l~l~DG~~~~criiDiS~SGAAi~~~~r--p~iGs~V~v-------G-  171 (207)
T Consensus        99 ~p~pe~lkriQRR~~fRvsa~l~~~y~---~~~~~~d~~~lr~~~~DiS~GGm~~vl~~gl~~~l~e~~~~~~~~~~~~~  175 (233)
T COG5581          99 TPPPETLKRIQRRRYFRVSAPLSPPYY---VQNKLTDEEPLRFTLYDISAGGMGLVLEGGLSFRLHEGIRYVDALVDEGQ  175 (233)
T ss_pred             CCCHHHHHHHHHHHHEEECCCCCCCEE---ECCCCCCCCCCEEEEEEECCCCHHEEECCCCCCCCCCCCEEEEEECCCCC
T ss_conf             599799889887664563420146455---32566765651237886047632011077767576787378764010565


Q ss_pred             -----CEEEEEEEEE------CCEEEEEECCCCCCCHHHHHHHHHCC
Q ss_conf             -----4669999993------89089997167784236778753039
Q gi|254780885|r  172 -----DILGRVVRIF------PGGIAIEFSSVQESNIAFKSLINHCY  207 (207)
Q Consensus       172 -----~~~grVVRh~------~~GfaVeF~~~q~~~~~~~~~~~~~~  207 (207)
T Consensus       176 d~~li~~~~~vv~~~k~e~~~~~r~~leFl~--is~~~er~l~r~~F  220 (233)
T COG5581         176 DQQLISISARVVRIRKDEKLGERRLGLEFLE--ISPRIERKLIRFVF  220 (233)
T ss_pred             CCCEEEEEEEEEEECCCCCCCCEEEEEEEEC--CCHHHHHHHHHHHH
T ss_conf             4000450038998537753363466678703--89889999999999