HHsearch alignment for GI: 254780885 and conserved domain: COG5581
>COG5581 c-di-GMP-binding protein [Signal transduction mechanisms].
Probab=95.37 E-value=0.24 Score=28.60 Aligned_cols=102 Identities=23% Similarity=0.301 Sum_probs=71.8
Q ss_pred HHHHHHHHCCCEEEEEEEEEEEEECC----CCCEEEEEEEECCCCEEEEECCCCCC---CCCEEEEEECCCC------CE
Q ss_conf 34322201062147999705799468----98302699987568549994278876---7974999995544------37
Q gi|254780885|r 6 HNLQFIDQRAFQRVKVDLKGRFLLFD----GTEYNCIVREISPGGLCIVCDVPMFL---VGERSIVFVEKVG------RI 72 (207)
Q Consensus 6 ~~~~~~drR~f~RV~v~l~GR~ll~d----~~E~~C~t~diSpgg~~l~~~~~~~~---~Gervv~Yld~iG------rl 72 (207)
T Consensus 103 e~lkriQRR~~fRvsa~l~~~y~~~~~~~d~~~lr~~~~DiS~GGm~~vl~~gl~~~l~e~~~~~~~~~~~~~d~~li~~ 182 (233)
T COG5581 103 ETLKRIQRRRYFRVSAPLSPPYYVQNKLTDEEPLRFTLYDISAGGMGLVLEGGLSFRLHEGIRYVDALVDEGQDQQLISI 182 (233)
T ss_pred HHHHHHHHHHHEEECCCCCCCEEECCCCCCCCCCEEEEEEECCCCHHEEECCCCCCCCCCCCEEEEEECCCCCCCCEEEE
T ss_conf 99889887664563420146455325667656512378860476320110777675767873787640105654000450
Q ss_pred EEEEEEECC-------CCCEEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf 699999308-------983899997698789999999998764
Q gi|254780885|r 73 EGKVVNFDS-------NRGYAVRIVTSENERRKLADKLIWLAN 108 (207)
Q Consensus 73 EG~V~r~~~-------~~GFav~l~~t~~kR~kLA~qLtWlan 108 (207)
T Consensus 183 ~~~vv~~~k~e~~~~~r~~le-Fl~is~~~er~l~r~~F~lqr 224 (233)
T COG5581 183 SARVVRIRKDEKLGERRLGLE-FLEISPRIERKLIRFVFELQR 224 (233)
T ss_pred EEEEEEECCCCCCCCEEEEEE-EECCCHHHHHHHHHHHHHHHH
T ss_conf 038998537753363466678-703898899999999999999