RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780885|ref|YP_003065298.1| hypothetical protein
CLIBASIA_03910 [Candidatus Liberibacter asiaticus str. psy62]
(207 letters)
>gnl|CDD|148695 pfam07238, PilZ, PilZ domain. This domain is found in a wide
variety of bacterial signalling proteins.
Length = 102
Score = 41.7 bits (98), Expect = 1e-04
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 12 DQRAFQRVKVDLKGRFLLFDGTEYNCIVREISPGGLCIVCDVPMFLVGER-SIVFV---- 66
+R RV V+L LL G Y+ ++ +IS GG + P +G+ +
Sbjct: 1 QRRREPRVPVNLPVTLLLGGGELYSGVIIDISLGGAALRLPEP-LQLGDEVRLRLTLPDD 59
Query: 67 EKVGRIEGKVVNFDSN---RGYAVRIVTSENERRKLADKLI 104
+ G+VV + G V+ + + E R+L ++L+
Sbjct: 60 GIKLLVPGRVVRIRPDGDGYGVGVQFLELDEESRRLLERLL 100
Score = 33.2 bits (76), Expect = 0.044
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 16/92 (17%)
Query: 130 VDAQLVLNDNTKHSCKVIDISESGVSVS----------VDLQIEMFSKVLFNDILGRVVR 179
+ L+L +S +IDIS G ++ V L++ + + + GRVVR
Sbjct: 12 LPVTLLLGGGELYSGVIIDISLGGAALRLPEPLQLGDEVRLRLTLPDDGIKLLVPGRVVR 71
Query: 180 IFPG----GIAIEFSSVQESNIAFKSLINHCY 207
I P G+ ++F + E + + L +
Sbjct: 72 IRPDGDGYGVGVQFLELDEESR--RLLERLLF 101
>gnl|CDD|180154 PRK05591, rplQ, 50S ribosomal protein L17; Validated.
Length = 113
Score = 32.0 bits (74), Expect = 0.12
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 88 RIVTSE---NERRKLADKLIWLANKDDLH 113
RI T+ E R++ +KLI LA K DLH
Sbjct: 30 RIETTLPKAKELRRVVEKLITLAKKGDLH 58
>gnl|CDD|183163 PRK11498, bcsA, cellulose synthase catalytic subunit; Provisional.
Length = 852
Score = 26.9 bits (60), Expect = 4.2
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 11/75 (14%)
Query: 14 RAFQRVKVDLKGRFLLFDGTEYNCIVREISPGGLCIVCDVPMFLV-----------GERS 62
R RV++ + DG ++C V++ S GGL I + L+ G++
Sbjct: 683 RRSHRVEMTMPAAIAREDGHLFSCTVQDFSDGGLGIKINGQAQLLEGQKVNLLLKRGQQE 742
Query: 63 IVFVEKVGRIEGKVV 77
VF +V R+ G V
Sbjct: 743 YVFPTQVTRVMGNEV 757
>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230;
Provisional.
Length = 2849
Score = 26.5 bits (58), Expect = 4.7
Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 154 VSVSVDLQIEMFSKVL-FNDILGRVVRIFPGGIAIEFSSVQESNIAFKSLI-NH 205
+ + +D+Q E+F K F+D + + +P F+ + + + L NH
Sbjct: 662 LKLDLDIQYELFKKFFHFHDKNAKYLNGYPSFFIFPFNHIAKKELKKNPLFKNH 715
>gnl|CDD|172365 PRK13838, PRK13838, conjugal transfer pilin processing protease
TraF; Provisional.
Length = 176
Score = 26.5 bits (59), Expect = 5.5
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 151 ESGVSVSVDLQIEMFSKVLFNDILGRVVRIFPGGI 185
E G SVS+D + S V D GR + FPGG+
Sbjct: 101 EIGGSVSIDGRPLPSSSVRRRDGEGRPLTPFPGGV 135
>gnl|CDD|162408 TIGR01538, portal_SPP1, phage portal protein, SPP1 family. This
model represents one of several distantly related
families of phage portal protein. This protein forms a
hole, or portal, that enables DNA passage during
packaging and ejection. It also forms the junction
between the phage head (capsid) and the tail proteins.
It functions as a dodecamer of a single polypeptide of
average mol. wt. of 40-90 KDa.
Length = 412
Score = 26.4 bits (58), Expect = 6.1
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 15/78 (19%)
Query: 76 VVNF-----DSNRGYAVRI-VTSENERRKLADKLIWLANKDDLH------LQDCRAYGRK 123
N+ D GY V V ++ + L D L LAN++D H ++D GR
Sbjct: 52 SHNWHKYIVDQKTGYLVGNPVKFTSDDKTLLDYLNELANQNDFHDILNELVKDLSNKGRA 111
Query: 124 ---ITRDREVDAQLVLND 138
+ D + + +V+ D
Sbjct: 112 YELLYVDEDDETDVVIFD 129
>gnl|CDD|180093 PRK05452, PRK05452, anaerobic nitric oxide reductase
flavorubredoxin; Provisional.
Length = 479
Score = 26.3 bits (58), Expect = 6.6
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Query: 114 LQDCRAYGRKITRDREVDAQLVLNDNTKHSCKVIDISESGVSVSVDLQIEMFSKV 168
L+ CR +GR+I R Q L + + + E+ + + DL M V
Sbjct: 382 LELCREHGREIAR------QWALAPLPQSTVNTVVKEETSATTTADLGPRMQCSV 430
>gnl|CDD|163282 TIGR03476, HpnL, putative membrane protein. This family of
hydrophobic proteins is observed in two distinct
contexts. It is primarily found in the presence of genes
for the biosynthesis and elaboration of hopene where we
assign the gene symbol HpnL. In a subset of the genomes
containing HpnL a second, often plasmid-encoded, homolog
is observed in a context implying the biosynthesis of
2-aminoethylphosphonate head-group containing lipids.
Length = 318
Score = 25.8 bits (57), Expect = 7.5
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 148 DISESGVSVSVDLQIEMFSKVLF 170
++G SV VDL + ++++F
Sbjct: 107 PAPDAGASVVVDLTLTALAQLIF 129
>gnl|CDD|185281 PRK15383, PRK15383, type III secretion system protein; Provisional.
Length = 335
Score = 25.7 bits (56), Expect = 7.7
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 16 FQRVKVDLKGRFLLFDGTEYNCIVREISPGGLCIVCDVPMFLVGERSIVFV 66
F R LKG + ++ C + PGG CI D M L + +++
Sbjct: 192 FYRNLFLLKGSDAFLEAGKHGC--HHLQPGGGCIYLDADMLLTDKLGTLYL 240
>gnl|CDD|184050 PRK13430, PRK13430, F0F1 ATP synthase subunit delta; Provisional.
Length = 271
Score = 25.7 bits (57), Expect = 8.1
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 18/58 (31%)
Query: 83 RGYAVRIVT-----SENERRKLADKLIWLANKDDLHLQDCRAYGRKITRDREVDAQLV 135
RG +V VT S+ ++++LA L R YGR + + EVD ++
Sbjct: 198 RGRSVATVTTAVPLSDEQKQRLAAAL-------------SRIYGRPVHLNSEVDPSVL 242
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.326 0.142 0.418
Gapped
Lambda K H
0.267 0.0716 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,313,470
Number of extensions: 206379
Number of successful extensions: 456
Number of sequences better than 10.0: 1
Number of HSP's gapped: 455
Number of HSP's successfully gapped: 16
Length of query: 207
Length of database: 5,994,473
Length adjustment: 89
Effective length of query: 118
Effective length of database: 4,071,361
Effective search space: 480420598
Effective search space used: 480420598
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.0 bits)