RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780885|ref|YP_003065298.1| hypothetical protein
CLIBASIA_03910 [Candidatus Liberibacter asiaticus str. psy62]
         (207 letters)



>d1ywua1 b.45.2.1 (A:1-125) Hypothetical protein PA4608 {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 125

 Score = 35.2 bits (81), Expect = 0.004
 Identities = 14/109 (12%), Positives = 36/109 (33%), Gaps = 10/109 (9%)

Query: 12  DQRAFQRVKVDLKGRFLLFDGTEYNCIVREISPGGLCIVCDVPMFLVGERSIVFV----- 66
           ++R F R+  D     +L     +  ++ ++S  G+ +      +    +          
Sbjct: 7   ERRRFHRIAFDADSE-ILQGERRWEVLLHDVSLHGILVGQPQD-WNGDPQRPFEARLYLG 64

Query: 67  -EKVGRIEGKVVNFDSNRGYAVRIVTSENERRKLADKLIWLANKDDLHL 114
            + + R+E  +     +          + +      +L+ L N  D  L
Sbjct: 65  LDVLIRMEISLAWAR-DGLLGFECQHIDLDSISHLRRLVEL-NLGDEEL 111



 Score = 32.5 bits (74), Expect = 0.027
 Identities = 13/98 (13%), Positives = 35/98 (35%), Gaps = 16/98 (16%)

Query: 122 RKITR-DREVDAQLVLNDNTKHSCKVIDISESGVSV------------SVDLQIEMFSKV 168
           R+  R   + D++++  +       + D+S  G+ V              + ++ +   V
Sbjct: 9   RRFHRIAFDADSEILQGERR-WEVLLHDVSLHGILVGQPQDWNGDPQRPFEARLYLGLDV 67

Query: 169 LFNDILGRVVRIFPGGIAIEFSSVQESNIAF-KSLINH 205
           L   +   +     G +  E   +   +I+  + L+  
Sbjct: 68  LIR-MEISLAWARDGLLGFECQHIDLDSISHLRRLVEL 104


>d2zjrk1 d.188.1.1 (K:3-115) Prokaryotic ribosomal protein L17
           {Deinococcus radiodurans [TaxId: 1299]}
          Length = 113

 Score = 27.9 bits (62), Expect = 0.68
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 6/46 (13%)

Query: 88  RIVTSEN---ERRKLADKLIWLANKDDLHLQDCRAYGRKITRDREV 130
           RI T+     E R   ++LI  A   DLH    R    +   D++V
Sbjct: 31  RIQTTLTKAKELRPFVEQLITTAKGGDLH---SRRLVAQDIHDKDV 73


>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
           type 2 [TaxId: 11060]}
          Length = 305

 Score = 26.4 bits (57), Expect = 1.6
 Identities = 21/151 (13%), Positives = 34/151 (22%), Gaps = 8/151 (5%)

Query: 50  VCDVPMFLVGERSIVFVEKVGRIEGKVVNFDSNRGYAVRIVTSENERRKLADKL-----I 104
           + D    +         E V   +GK V F  +      I     +  K   +L      
Sbjct: 155 IMDEEREIPERSWNSGHEWVTDFKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFD 214

Query: 105 WLANKDDLHLQDCRAYGRKITRDREVDAQLVLNDNTKHSCKVIDISESGVSVSVDLQIEM 164
               K   +  D               A+ V++      C    I   G    +      
Sbjct: 215 SEYIKTRTNDWDFVVTTDISEMGANFKAERVIDPRR---CMKPVILTDGEERVILAGPMP 271

Query: 165 FSKVLFNDILGRVVRIFPGGIAIEFSSVQES 195
            +        GRV R             +  
Sbjct: 272 VTHSSAAQRRGRVGRNPKNENDQYIYMGEPL 302


>d2cqma1 d.188.1.1 (A:28-136) Prokaryotic ribosomal protein L17
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 109

 Score = 26.1 bits (57), Expect = 2.2
 Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 3/41 (7%)

Query: 88  RIVTSEN---ERRKLADKLIWLANKDDLHLQDCRAYGRKIT 125
           RI        E R  A+KLI      D + +  R     +T
Sbjct: 14  RIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLT 54


>d2qamn1 d.188.1.1 (N:1-120) Prokaryotic ribosomal protein L17
           {Escherichia coli [TaxId: 562]}
          Length = 120

 Score = 26.0 bits (57), Expect = 2.4
 Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 88  RIVTSEN---ERRKLADKLIWLANKDDLH 113
            I T+     E R++ + LI LA  D + 
Sbjct: 33  IIKTTLPKAKELRRVVEPLITLAKTDSVA 61


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.142    0.418 

Gapped
Lambda     K      H
   0.267   0.0630    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 771,090
Number of extensions: 35512
Number of successful extensions: 112
Number of sequences better than 10.0: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 7
Length of query: 207
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,295,466
Effective search space: 163228716
Effective search space used: 163228716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.6 bits)