RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780885|ref|YP_003065298.1| hypothetical protein CLIBASIA_03910 [Candidatus Liberibacter asiaticus str. psy62] (207 letters) >d1ywua1 b.45.2.1 (A:1-125) Hypothetical protein PA4608 {Pseudomonas aeruginosa [TaxId: 287]} Length = 125 Score = 35.2 bits (81), Expect = 0.004 Identities = 14/109 (12%), Positives = 36/109 (33%), Gaps = 10/109 (9%) Query: 12 DQRAFQRVKVDLKGRFLLFDGTEYNCIVREISPGGLCIVCDVPMFLVGERSIVFV----- 66 ++R F R+ D +L + ++ ++S G+ + + + Sbjct: 7 ERRRFHRIAFDADSE-ILQGERRWEVLLHDVSLHGILVGQPQD-WNGDPQRPFEARLYLG 64 Query: 67 -EKVGRIEGKVVNFDSNRGYAVRIVTSENERRKLADKLIWLANKDDLHL 114 + + R+E + + + + +L+ L N D L Sbjct: 65 LDVLIRMEISLAWAR-DGLLGFECQHIDLDSISHLRRLVEL-NLGDEEL 111 Score = 32.5 bits (74), Expect = 0.027 Identities = 13/98 (13%), Positives = 35/98 (35%), Gaps = 16/98 (16%) Query: 122 RKITR-DREVDAQLVLNDNTKHSCKVIDISESGVSV------------SVDLQIEMFSKV 168 R+ R + D++++ + + D+S G+ V + ++ + V Sbjct: 9 RRFHRIAFDADSEILQGERR-WEVLLHDVSLHGILVGQPQDWNGDPQRPFEARLYLGLDV 67 Query: 169 LFNDILGRVVRIFPGGIAIEFSSVQESNIAF-KSLINH 205 L + + G + E + +I+ + L+ Sbjct: 68 LIR-MEISLAWARDGLLGFECQHIDLDSISHLRRLVEL 104 >d2zjrk1 d.188.1.1 (K:3-115) Prokaryotic ribosomal protein L17 {Deinococcus radiodurans [TaxId: 1299]} Length = 113 Score = 27.9 bits (62), Expect = 0.68 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 6/46 (13%) Query: 88 RIVTSEN---ERRKLADKLIWLANKDDLHLQDCRAYGRKITRDREV 130 RI T+ E R ++LI A DLH R + D++V Sbjct: 31 RIQTTLTKAKELRPFVEQLITTAKGGDLH---SRRLVAQDIHDKDV 73 >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 Score = 26.4 bits (57), Expect = 1.6 Identities = 21/151 (13%), Positives = 34/151 (22%), Gaps = 8/151 (5%) Query: 50 VCDVPMFLVGERSIVFVEKVGRIEGKVVNFDSNRGYAVRIVTSENERRKLADKL-----I 104 + D + E V +GK V F + I + K +L Sbjct: 155 IMDEEREIPERSWNSGHEWVTDFKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFD 214 Query: 105 WLANKDDLHLQDCRAYGRKITRDREVDAQLVLNDNTKHSCKVIDISESGVSVSVDLQIEM 164 K + D A+ V++ C I G + Sbjct: 215 SEYIKTRTNDWDFVVTTDISEMGANFKAERVIDPRR---CMKPVILTDGEERVILAGPMP 271 Query: 165 FSKVLFNDILGRVVRIFPGGIAIEFSSVQES 195 + GRV R + Sbjct: 272 VTHSSAAQRRGRVGRNPKNENDQYIYMGEPL 302 >d2cqma1 d.188.1.1 (A:28-136) Prokaryotic ribosomal protein L17 {Human (Homo sapiens) [TaxId: 9606]} Length = 109 Score = 26.1 bits (57), Expect = 2.2 Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 3/41 (7%) Query: 88 RIVTSEN---ERRKLADKLIWLANKDDLHLQDCRAYGRKIT 125 RI E R A+KLI D + + R +T Sbjct: 14 RIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLT 54 >d2qamn1 d.188.1.1 (N:1-120) Prokaryotic ribosomal protein L17 {Escherichia coli [TaxId: 562]} Length = 120 Score = 26.0 bits (57), Expect = 2.4 Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 3/29 (10%) Query: 88 RIVTSEN---ERRKLADKLIWLANKDDLH 113 I T+ E R++ + LI LA D + Sbjct: 33 IIKTTLPKAKELRRVVEPLITLAKTDSVA 61 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.326 0.142 0.418 Gapped Lambda K H 0.267 0.0630 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 771,090 Number of extensions: 35512 Number of successful extensions: 112 Number of sequences better than 10.0: 1 Number of HSP's gapped: 111 Number of HSP's successfully gapped: 7 Length of query: 207 Length of database: 2,407,596 Length adjustment: 81 Effective length of query: 126 Effective length of database: 1,295,466 Effective search space: 163228716 Effective search space used: 163228716 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 51 (23.6 bits)