BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780885|ref|YP_003065298.1| hypothetical protein
CLIBASIA_03910 [Candidatus Liberibacter asiaticus str. psy62]
(207 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780885|ref|YP_003065298.1| hypothetical protein CLIBASIA_03910 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 207
Score = 420 bits (1080), Expect = e-120, Method: Compositional matrix adjust.
Identities = 207/207 (100%), Positives = 207/207 (100%)
Query: 1 MYRGIHNLQFIDQRAFQRVKVDLKGRFLLFDGTEYNCIVREISPGGLCIVCDVPMFLVGE 60
MYRGIHNLQFIDQRAFQRVKVDLKGRFLLFDGTEYNCIVREISPGGLCIVCDVPMFLVGE
Sbjct: 1 MYRGIHNLQFIDQRAFQRVKVDLKGRFLLFDGTEYNCIVREISPGGLCIVCDVPMFLVGE 60
Query: 61 RSIVFVEKVGRIEGKVVNFDSNRGYAVRIVTSENERRKLADKLIWLANKDDLHLQDCRAY 120
RSIVFVEKVGRIEGKVVNFDSNRGYAVRIVTSENERRKLADKLIWLANKDDLHLQDCRAY
Sbjct: 61 RSIVFVEKVGRIEGKVVNFDSNRGYAVRIVTSENERRKLADKLIWLANKDDLHLQDCRAY 120
Query: 121 GRKITRDREVDAQLVLNDNTKHSCKVIDISESGVSVSVDLQIEMFSKVLFNDILGRVVRI 180
GRKITRDREVDAQLVLNDNTKHSCKVIDISESGVSVSVDLQIEMFSKVLFNDILGRVVRI
Sbjct: 121 GRKITRDREVDAQLVLNDNTKHSCKVIDISESGVSVSVDLQIEMFSKVLFNDILGRVVRI 180
Query: 181 FPGGIAIEFSSVQESNIAFKSLINHCY 207
FPGGIAIEFSSVQESNIAFKSLINHCY
Sbjct: 181 FPGGIAIEFSSVQESNIAFKSLINHCY 207
>gi|254780456|ref|YP_003064869.1| 30S ribosomal protein S1 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 576
Score = 25.4 bits (54), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 130 VDAQLVLNDNTKHSCKVIDISESGVSVSV 158
VD+ L N SC+VI +SE G+ VS+
Sbjct: 450 VDSVSSLRKNDVVSCEVISVSEGGIEVSL 478
>gi|254781097|ref|YP_003065510.1| N-acetylglucosaminyl transferase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 369
Score = 23.1 bits (48), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 82 NRGYAVRIVTSENERRKLAD 101
NRGYAV ++T R + D
Sbjct: 30 NRGYAVYLITDRRARSFITD 49
>gi|254780524|ref|YP_003064937.1| flagellar hook-associated protein FlgK [Candidatus Liberibacter
asiaticus str. psy62]
Length = 480
Score = 21.9 bits (45), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 14/92 (15%)
Query: 87 VRIVTSENERRKLADKLIWLANKDDLHLQDCRAYGRKITRDREVDAQLVLNDNTKHSCKV 146
V +VT +E + + DK+ LH +++ + E +++ D+ ++
Sbjct: 50 VTVVTQRSENKNMFDKV--------LHAHSSAIGQQRLLQSFEALKEMMSADDHYNNSPT 101
Query: 147 IDISESGVSVSVDLQIEMFSKVLFNDILGRVV 178
IS+ S +E +SK L DILG+ V
Sbjct: 102 HYISKLRDS------LESYSKNLSEDILGKTV 127
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.326 0.142 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,174
Number of Sequences: 1233
Number of extensions: 5526
Number of successful extensions: 20
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 6
length of query: 207
length of database: 328,796
effective HSP length: 70
effective length of query: 137
effective length of database: 242,486
effective search space: 33220582
effective search space used: 33220582
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 36 (18.5 bits)