RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780886|ref|YP_003065299.1| hypothetical protein
CLIBASIA_03915 [Candidatus Liberibacter asiaticus str. psy62]
         (41 letters)



>gnl|CDD|152121 pfam11685, DUF3281, Protein of unknown function (DUF3281).  This
          family of bacterial proteins has no known function.
          Length = 269

 Score = 26.3 bits (58), Expect = 1.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 4  KGLIVASIISSTAIMSSCSYS 24
          K LI A IISST ++ SC  S
Sbjct: 3  KLLIGAVIISSTVLLGSCGKS 23


>gnl|CDD|178409 PLN02813, PLN02813, pfkB-type carbohydrate kinase family protein.
          Length = 426

 Score = 24.0 bits (52), Expect = 9.3
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 8   VASIISSTAIMSSCSYSWNLKHAIRKIEIAIKE 40
           +AS IS + ++    Y W L   I  I  A +E
Sbjct: 218 LASAISKSRVLVVEGYLWELPQTIEAIAQACEE 250


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.318    0.125    0.343 

Gapped
Lambda     K      H
   0.267   0.0844    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 572,069
Number of extensions: 18056
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 7
Length of query: 41
Length of database: 5,994,473
Length adjustment: 15
Effective length of query: 26
Effective length of database: 5,670,353
Effective search space: 147429178
Effective search space used: 147429178
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (22.8 bits)