RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780886|ref|YP_003065299.1| hypothetical protein
CLIBASIA_03915 [Candidatus Liberibacter asiaticus str. psy62]
         (41 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.5 bits (71), Expect = 0.043
 Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 12/33 (36%)

Query: 5   GLIVASIISSTAIMSSCSYSW-----NLKHAIR 32
           GL+ A  I+        + SW     +++ AI 
Sbjct: 276 GLVTAVAIAE-------TDSWESFFVSVRKAIT 301


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 29.2 bits (64), Expect = 0.22
 Identities = 4/12 (33%), Positives = 10/12 (83%)

Query: 28 KHAIRKIEIAIK 39
          K A++K++ ++K
Sbjct: 19 KQALKKLQASLK 30


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.318    0.125    0.343 

Gapped
Lambda     K      H
   0.267   0.0582    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 319,605
Number of extensions: 7471
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 3
Length of query: 41
Length of database: 5,693,230
Length adjustment: 14
Effective length of query: 27
Effective length of database: 5,353,814
Effective search space: 144552978
Effective search space used: 144552978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.4 bits)