Query gi|254780887|ref|YP_003065300.1| hypothetical protein CLIBASIA_03920 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 86
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 18:09:29 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780887.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3hhd_A Fatty acid synthase; t 30.2 17 0.0005 18.2 0.7 14 31-47 148-161 (164)
2 >1v8c_A MOAD related protein; 26.5 21 0.00061 17.7 0.6 18 7-24 47-64 (84)
3 >3dcl_A TM1086; SAD, structura 21.8 37 0.0011 16.4 1.2 25 57-81 3-27 (41)
4 >1ej6_B Lambda1; icosahedral, 14.2 85 0.0025 14.5 1.5 13 13-25 96-108 (170)
5 >1kn7_A RCK4, voltage-gated po 9.2 1.3E+02 0.0037 13.7 1.1 12 68-79 66-77 (78)
6 >1nt2_B Conserved hypothetical 7.9 54 0.0016 15.6 -1.3 20 32-51 67-86 (162)
7 >2d73_A Alpha-glucosidase SUSB 7.5 1.6E+02 0.0048 13.1 1.0 17 57-73 44-60 (309)
8 >1n6u_A Interferon-alpha/beta 7.4 1.9E+02 0.0057 12.7 1.4 38 24-66 44-81 (107)
9 >2w07_B PAPF, minor pilin subu 7.0 1.6E+02 0.0046 13.2 0.7 37 35-71 11-47 (148)
10 >3but_A Uncharacterized protei 6.2 2.1E+02 0.0063 12.4 1.1 43 9-68 8-50 (136)
No 1
>>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A (A:490-616,A:753-789)
Probab=30.19 E-value=17 Score=18.16 Aligned_cols=14 Identities=71% Similarity=1.168 Sum_probs=10.4
Q ss_pred CHHHCCCCCCCCEECCC
Q ss_conf 11003744642000344
Q gi|254780887|r 31 PKKALKPSCNLSTIIPQ 47 (86)
Q Consensus 31 pkkalkpscnlstiipq 47 (86)
-|..||||| ||||-
T Consensus 148 ~~~~~~~~~---~~~~~ 161 (164)
T 3hhd_A 148 LKRGLKPSC---TIIPL 161 (164)
T ss_dssp HHHHSCTTC---EEEEC
T ss_pred HHHHHCCCC---EEEEE
T ss_conf 998738775---69986
No 2
>>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} (A:85-168)
Probab=26.54 E-value=21 Score=17.73 Aligned_cols=18 Identities=44% Similarity=0.719 Sum_probs=14.2
Q ss_pred HHHHHCCCCCEEEEEEEC
Q ss_conf 887640354047875521
Q gi|254780887|r 7 KILKVGSMGITRIRFEMG 24 (86)
Q Consensus 7 kilkvgsmgitrirfemg 24 (86)
.-|+|||+.|.|.|.|.-
T Consensus 47 ~pl~vgsl~ip~lrveve 64 (84)
T 1v8c_A 47 EPLKVGSLSIPQLRVEVE 64 (84)
T ss_dssp EEEEETTEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHH
T ss_conf 356267788899999999
No 3
>>3dcl_A TM1086; SAD, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 2.25A {Thermotoga maritima} (A:24-64)
Probab=21.82 E-value=37 Score=16.38 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=19.2
Q ss_pred CCEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 3101422787610466787766774
Q gi|254780887|r 57 LNYSVSTNDKPFTYPSRGASSSDLP 81 (86)
Q Consensus 57 lnysvstndkpftypsrgasssdlp 81 (86)
-+|+|....+||.+|+-|.-.-..-
T Consensus 3 ~~yrv~~dG~~~ilP~~GGItyNv~ 27 (41)
T 3dcl_A 3 SPYSVTTEGTVRVIPVLGGITYNVK 27 (41)
T ss_dssp SSCEECTTSCEECCCCSBSEESSCC
T ss_pred CCCEECCCCCEEEECCCCCEEEEEE
T ss_conf 8857899998888215576788505
No 4
>>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} (B:1036-1205)
Probab=14.21 E-value=85 Score=14.54 Aligned_cols=13 Identities=54% Similarity=0.764 Sum_probs=10.7
Q ss_pred CCCCEEEEEEECC
Q ss_conf 3540478755214
Q gi|254780887|r 13 SMGITRIRFEMGL 25 (86)
Q Consensus 13 smgitrirfemgl 25 (86)
.-|-+|||.|||-
T Consensus 96 ~aGr~rvriE~g~ 108 (170)
T 1ej6_B 96 KTGELRIRIEMGA 108 (170)
T ss_dssp HTSSEEEEEEEEE
T ss_pred HCCCEEEEEECCC
T ss_conf 6170699997165
No 5
>>1kn7_A RCK4, voltage-gated potassium channel protein KV1.4; inactivation domain, membrane protein; NMR {Rattus norvegicus} (A:)
Probab=9.24 E-value=1.3e+02 Score=13.65 Aligned_cols=12 Identities=42% Similarity=0.426 Sum_probs=9.3
Q ss_pred CCCCCCCCCCCC
Q ss_conf 104667877667
Q gi|254780887|r 68 FTYPSRGASSSD 79 (86)
Q Consensus 68 ftypsrgasssd 79 (86)
..|++|||+||.
T Consensus 66 Hhhq~r~A~ssh 77 (78)
T 1kn7_A 66 HHHQTRGAYSSH 77 (78)
T ss_dssp CCSCCCCCCCCC
T ss_pred CCCCCCCCCCCC
T ss_conf 776655444568
No 6
>>1nt2_B Conserved hypothetical protein; adeMet, binding motif, coiled coil, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} (B:1-71,B:168-258)
Probab=7.87 E-value=54 Score=15.56 Aligned_cols=20 Identities=20% Similarity=0.456 Sum_probs=13.6
Q ss_pred HHHCCCCCCCCEECCCCEEE
Q ss_conf 10037446420003440444
Q gi|254780887|r 32 KKALKPSCNLSTIIPQTVSF 51 (86)
Q Consensus 32 kkalkpscnlstiipqtvsf 51 (86)
.+.|+||||+..+=-+--.|
T Consensus 67 ~~~~~PScNIQvLGAeKklf 86 (162)
T 1nt2_B 67 EKELRPASKIQVIGAEKSLY 86 (162)
T ss_dssp HHHHHCHHHHTTSSCC----
T ss_pred HHHCCCHHHHHHHCCCHHHH
T ss_conf 86367856689874032666
No 7
>>2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM barrel; 1.60A {Bacteroides thetaiotaomicron vpi-5482} PDB: 2zq0_A* 2jke_A* 2jka_A* 2jkp_A* (A:1-309)
Probab=7.49 E-value=1.6e+02 Score=13.07 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=11.5
Q ss_pred CCEEEECCCCCCCCCCC
Q ss_conf 31014227876104667
Q gi|254780887|r 57 LNYSVSTNDKPFTYPSR 73 (86)
Q Consensus 57 lnysvstndkpftypsr 73 (86)
+.|+|+-++++.--||+
T Consensus 44 l~YsV~~~g~~vi~~S~ 60 (309)
T 2d73_A 44 PTYELTYKNKVVIKPST 60 (309)
T ss_dssp EEEEEEETTEEEEEEEE
T ss_pred EEEEEEECCEEEEECCC
T ss_conf 89999999969982387
No 8
>>1n6u_A Interferon-alpha/beta receptor beta chain; immunoglobulin fold, fibronectin fold, two-domain structure, immune system; NMR {Homo sapiens} (A:106-212)
Probab=7.41 E-value=1.9e+02 Score=12.69 Aligned_cols=38 Identities=37% Similarity=0.440 Sum_probs=24.4
Q ss_pred CCCCCCCCHHHCCCCCCCCEECCCCEEEEEECCCCEEEECCCC
Q ss_conf 1433558110037446420003440444543043101422787
Q gi|254780887|r 24 GLRHKNHPKKALKPSCNLSTIIPQTVSFELINNLNYSVSTNDK 66 (86)
Q Consensus 24 glrhknhpkkalkpscnlstiipqtvsfelinnlnysvstndk 66 (86)
+.+.+.+|+-.-.-.-|++-+|- +|+-|-||.||.+-+
T Consensus 44 ~ivk~h~P~i~~NvTgnFtyVid-----~L~PNtNYCVSVy~~ 81 (107)
T 1n6u_A 44 GIVKKHKPEIKGNMSGNFTYIID-----KLIPNTNYCVSVYLE 81 (107)
T ss_dssp TBCCBCCCCCTTTSSSEEEECCC-----SCCSSCCEEEEEEEE
T ss_pred CCCCEEEEEEEEECCCCCEEEEC-----CCCCCCEEEEEEEEE
T ss_conf 46626556665641454279984-----899999899999999
No 9
>>2w07_B PAPF, minor pilin subunit PAPF; donor strand complementation, NTE, PAPD, groove, immunoglobulin domain, donor-strand exchange, secreted; 2.20A {Escherichia coli} (B:)
Probab=6.97 E-value=1.6e+02 Score=13.16 Aligned_cols=37 Identities=22% Similarity=0.226 Sum_probs=21.7
Q ss_pred CCCCCCCCEECCCCEEEEEECCCCEEEECCCCCCCCC
Q ss_conf 3744642000344044454304310142278761046
Q gi|254780887|r 35 LKPSCNLSTIIPQTVSFELINNLNYSVSTNDKPFTYP 71 (86)
Q Consensus 35 lkpscnlstiipqtvsfelinnlnysvstndkpftyp 71 (86)
.-|+|.++.--+|+|.|.-+..-...-.+..+||...
T Consensus 11 ~~~tC~i~~~~~~~V~lg~v~~~~l~~~~~~~~f~i~ 47 (148)
T 2w07_B 11 YIPPCTINNGQNIVVDFGNINPEHVDNSRGEVTKTIS 47 (148)
T ss_dssp SCCCCEEGGGCCCEEECCSCCSCSCSSSSCCEEEEEE
T ss_pred EECCCEECCCCEEEEECCEEEEHHCCCCCCCEEEEEE
T ss_conf 9067598399709999631581123787863788999
No 10
>>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initiative, PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304} (A:)
Probab=6.16 E-value=2.1e+02 Score=12.44 Aligned_cols=43 Identities=9% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHCCCCCEEEEEEECCCCCCCCHHHCCCCCCCCEECCCCEEEEEECCCCEEEECCCCCC
Q ss_conf 764035404787552143355811003744642000344044454304310142278761
Q gi|254780887|r 9 LKVGSMGITRIRFEMGLRHKNHPKKALKPSCNLSTIIPQTVSFELINNLNYSVSTNDKPF 68 (86)
Q Consensus 9 lkvgsmgitrirfemglrhknhpkkalkpscnlstiipqtvsfelinnlnysvstndkpf 68 (86)
+.+++.+...++|+..++-.|--.-.+. ++.+.|.+..|++++
T Consensus 8 v~~~~~~~~~~~~~l~l~V~NPN~~~l~-----------------i~~~~y~l~~ng~~i 50 (136)
T 3but_A 8 AXWGVVTDSQTEIVALAKVRNEDVVPIV-----------------VSGYHYTIEXNGVKV 50 (136)
T ss_dssp EEECCCCSSEEEEEEEEEEECCSSSCEE-----------------EEEEEEEEEETTEEE
T ss_pred EEEEEEEEEEEEEEEEEEEECCCCCCEE-----------------EEEEEEEEEECCEEE
T ss_conf 1666686237999999999998987645-----------------510799999999999
Done!