RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780887|ref|YP_003065300.1| hypothetical protein
CLIBASIA_03920 [Candidatus Liberibacter asiaticus str. psy62]
         (86 letters)



>gnl|CDD|33607 COG3814, COG3814, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 157

 Score = 25.3 bits (55), Expect = 3.7
 Identities = 16/65 (24%), Positives = 28/65 (43%)

Query: 14  MGITRIRFEMGLRHKNHPKKALKPSCNLSTIIPQTVSFELINNLNYSVSTNDKPFTYPSR 73
           + +T   F + L     P+K   P   L      +V+FEL  +++ ++    +P   PS 
Sbjct: 74  LKVTDTGFSVTLSFSGVPEKLYIPFDALRGFYDPSVNFELEFDVSLNIEEEAEPEAEPSN 133

Query: 74  GASSS 78
            A S 
Sbjct: 134 KAKSG 138


>gnl|CDD|31934 COG1748, LYS9, Saccharopine dehydrogenase and related proteins
           [Amino acid transport and metabolism].
          Length = 389

 Score = 24.9 bits (54), Expect = 4.7
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)

Query: 15  GITRIRFEMGLRHKNHPK--KALKP 37
           G+ R RFEM  R+  H +  KAL+ 
Sbjct: 229 GVVRTRFEMTFRYPGHLEVIKALRD 253


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.316    0.132    0.374 

Gapped
Lambda     K      H
   0.267   0.0563    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 950,313
Number of extensions: 38045
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 4
Length of query: 86
Length of database: 6,263,737
Length adjustment: 55
Effective length of query: 31
Effective length of database: 5,075,242
Effective search space: 157332502
Effective search space used: 157332502
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.8 bits)