RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780887|ref|YP_003065300.1| hypothetical protein CLIBASIA_03920 [Candidatus Liberibacter asiaticus str. psy62] (86 letters) >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} (W:) Length = 461 Score = 28.0 bits (60), Expect = 0.40 Identities = 2/25 (8%), Positives = 6/25 (24%), Gaps = 2/25 (8%) Query: 38 SCNLSTIIPQTVS--FELINNLNYS 60 S + + + +L Sbjct: 436 DIYWSEEMEDRLQALEKDKPSLRVI 460 >3a24_A Alpha-galactosidase; glycoside hydrolase family 97, retaining glycosidase; HET: MES; 2.30A {Bacteroides thetaiotaomicron} (A:1-270) Length = 270 Score = 26.0 bits (57), Expect = 1.7 Identities = 5/26 (19%), Positives = 11/26 (42%) Query: 48 TVSFELINNLNYSVSTNDKPFTYPSR 73 + + + L Y ++ N + PS Sbjct: 12 KTTITIGDRLTYDITCNGRQILTPSP 37 >3bf2_A Putative lipoprotein; NESG, MR36A, structural genomics, PSI-2, protein structure initiative; 2.60A {Neisseria meningitidis FAM18} (A:) Length = 152 Score = 24.7 bits (54), Expect = 4.5 Identities = 5/27 (18%), Positives = 8/27 (29%) Query: 47 QTVSFELINNLNYSVSTNDKPFTYPSR 73 + LI + V +P P Sbjct: 72 VINEYLLILTVEAQVLKRGEPVGKPXT 98 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.316 0.132 0.374 Gapped Lambda K H 0.267 0.0653 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 585,649 Number of extensions: 20631 Number of successful extensions: 47 Number of sequences better than 10.0: 1 Number of HSP's gapped: 47 Number of HSP's successfully gapped: 4 Length of query: 86 Length of database: 4,956,049 Length adjustment: 49 Effective length of query: 37 Effective length of database: 3,299,604 Effective search space: 122085348 Effective search space used: 122085348 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.2 bits)